LOCUS       DAJVSD010000001        61709 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.001, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000001 DAJVSD010000000
VERSION     DAJVSD010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 61709)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 61709)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..61709
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.001"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            254..799
                     /gene="sthA"
                     /locus_tag="OQP62_000001"
     CDS             254..799
                     /gene="sthA"
                     /locus_tag="OQP62_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein SthA"
                     /protein_id="HCS1719669.1"
                     /translation="MFNKKIIILAMLTAVASTPVFAQNTITFNGKIYDQACTVQVNGS
                     TDTTIDLGNYSKERIAEKGATTDYVPFTVSLVSCPEAGTGVPTQAMFRFHGATDDSNP
                     TYFKNADEGSETGAAGVGISIQNASHSDVTDNTDDAAVSLPTDGSTADFTYYAAMAND
                     GSATVTGGDVSTQVTYTVSYQ"
     gene            870..1553
                     /locus_tag="OQP62_000002"
     CDS             870..1553
                     /locus_tag="OQP62_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial assembly chaperone"
                     /protein_id="HCS1719670.1"
                     /translation="MKHIKKSVLVVLLTSHVAHASIVVGGTRLVFDGNNDESSINVEN
                     KDSKANLVQSWLSVADPQVTNKQVFIITPPLFRLDAGQKNSIRVIRSGAPLPADRESM
                     YWLNIKGIPSIDDNASANRVEISINTQIKLIYRPPALTKSTPDSQSQQLKWQTAGDVI
                     TVNNPTPYYMNFASVTLNSHEVKSATFVPPKSSASFKLSSTAAPHGTVTWRLISDYGM
                     SLEPHSGSF"
     gene            1599..4135
                     /locus_tag="OQP62_000003"
                     /pseudo
     CDS             1599..4135
                     /locus_tag="OQP62_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463449.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial outer membrane usher protein"
     gene            4153..4710
                     /locus_tag="OQP62_000004"
     CDS             4153..4710
                     /locus_tag="OQP62_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein SthD"
                     /protein_id="HCS1719671.1"
                     /translation="MNMNRFAALAALLTFTGLASWSPSISAAYNTADAVDINVTGLIY
                     ADPCTVTVPDTISLGQYARADIAVAGGNTATIPFTIKMTNCPATTTKAAISFNGVPYP
                     DPNYASAIYANSAANPAQDLGLQLFNLDSKSLVNLANNVTYTVDINSNTHEANLPVAA
                     RMYTPYGKVTAGDFTSVVTITIAWQ"
     gene            4751..5835
                     /locus_tag="OQP62_000005"
                     /pseudo
     CDS             4751..5835
                     /locus_tag="OQP62_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463447.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
     gene            complement(5893..7242)
                     /gene="creD"
                     /locus_tag="OQP62_000006"
     CDS             complement(5893..7242)
                     /gene="creD"
                     /locus_tag="OQP62_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein CreD"
                     /protein_id="HCS1719672.1"
                     /translation="MLKSPLLWKMITLGGAMILLLIPLMMVRHTIVERADYRSHVEAA
                     IRQSTSGPQKVVGPLVAVPVTELYTVLEEEKEVQYKRSYLYFWLPESLLVEGNQNVEA
                     RKIGIYQGQVWHTDMAIKAEFDVARLHELNRPNITLGKPFIVVGVGDARGISAVKAPQ
                     VNGEMLTVEPGTGLPESREGIHIPLPDSQWATRNLTLAMSLNLSGTGSFSLVPVGRSS
                     EMTLTSNWPHPNFVGDFLPGKREISGSGFQAQWQTSRFATNLGEQFADAQKVDWDNLP
                     AFSVAVSTPADQYQLTDRATKYAILLITLTFMAFFVFETLTGQRLHPMQYLLVGLSLV
                     MFYLLLLALSEHIGFTPAWIAASLVGALMNSVYLQAVLKGWRNSVLFTLALLALDGVM
                     WGLLRSEDSSLLLGTGVLLLALGGVMFLTRHLDWYSLSCQQRKSLPPVKDDELRLWK"
     gene            complement(7300..8724)
                     /gene="creC"
                     /locus_tag="OQP62_000007"
     CDS             complement(7300..8724)
                     /gene="creC"
                     /locus_tag="OQP62_000007"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     CreC"
                     /protein_id="HCS1719673.1"
                     /translation="MRIGMRLLLGYFLIVAVAAVFVLSIFVQEIKPGVRRATEGTLID
                     TATLLAALARDDLLSGNPTDGQLAKAFAQLQHRPFRANISGIVKVRNEYHVYMTDAQG
                     KVLFDSENKAVGQDYSRWNDVWLTLRGQYGARSTAKDSADPNSTVMYVAAPIISDGRI
                     IGVLTVGKPNAAMAPVIKRSERRILWASAVLLGIALAIGAGMVWWINRSIARLTRYAD
                     SVTENRPLALPALGSSELRKLAQALESMRIKLEGKNDIEQYVYALTHELKSPLAAIRG
                     AAEILREGPPADVVTRFTENILAQNTRMQALVETLLRQARLENRQDIPLAPVAVDELF
                     TQLSEARSIQLAAKKITLTLRPSSLVVVADAELLAQALGNVLDNAIDFTPENGVITLS
                     AQPMGEKAILQVTDSGCGIPDFALPRIFDRFYSLPRENGRKSSGLGLAFVSEAARLLN
                     GEVTLCNRPEGGVLASLTLHRHFT"
     gene            complement(8724..9413)
                     /gene="creB"
                     /locus_tag="OQP62_000008"
     CDS             complement(8724..9413)
                     /gene="creB"
                     /locus_tag="OQP62_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator CreB"
                     /protein_id="HCS1719674.1"
                     /translation="MQQPQVWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKAR
                     QQRPDAVILDVGLPDISGFELCRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYV
                     AKPFSPREVSARVRTLLRRVKKFAAPSPVVRTGHFDLNEPAAQIAWFGTPLSLTRYEF
                     LLLKTLLLSPERVYSCQQLMDIVWSDAQETFDRTVDTHIKTLRAKLRAINPDLSPINT
                     HRGMGYSLRSI"
     gene            complement(9426..9899)
                     /gene="creA"
                     /locus_tag="OQP62_000009"
     CDS             complement(9426..9899)
                     /gene="creA"
                     /locus_tag="OQP62_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein CreA"
                     /protein_id="HCS1719675.1"
                     /translation="MKYKSLVLFSILLLLGQSARAEQIGSVDTVFKMFGPDHKIVVEA
                     FDDPDVKNVTCYVSRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELSDKIKNGKAQGE
                     VVFKKRTSLIFKSLQVVRFYDEKRNTLAYLAYSDKVVDGSPKNAISAVPVMPWRQ"
     gene            10111..10980
                     /gene="robA"
                     /locus_tag="OQP62_000010"
     CDS             10111..10980
                     /gene="robA"
                     /locus_tag="OQP62_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MDR efflux pump AcrAB transcriptional activator
                     RobA"
                     /protein_id="HCS1719676.1"
                     /translation="MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD
                     VTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFSQTPAL
                     YRRSPEWSAFGIRPPLRLGEFTVPEHQFVTLEDTPLLGVTQSYSCSLEQISDFRHEMR
                     VQFWHDFLGHSPTIPPVLYGLNETRPSMEKDDEQEVFYTTALPQEQADGYVQSAHPVL
                     LQGGEYVMFTYEGLGTGVQDFILTVYGTCMPMLNLTRRKGQDIERYYPSEDTKTGDRP
                     INLRCEFLIPIRR"
     gene            complement(10977..11624)
                     /gene="gpmB"
                     /locus_tag="OQP62_000011"
     CDS             complement(10977..11624)
                     /gene="gpmB"
                     /locus_tag="OQP62_000011"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase GpmB"
                     /protein_id="HCS1719677.1"
                     /translation="MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVGERAR
                     SLGITHIISSDLGRTKRTAEIIAQACGCDITFDFRLRELDMGVLEKRQIDSLTEEEEG
                     WRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVST
                     ILGLPAWAERRLRLRNCSISRIDYQESQWLASGWVVETAGDVSHLDTPALDELQR"
     gene            11672..12007
                     /locus_tag="OQP62_000012"
     CDS             11672..12007
                     /locus_tag="OQP62_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF84 family protein"
                     /protein_id="HCS1719678.1"
                     /translation="MHQVISATTNPAKIQAILQAFEEIFGEGSCHITPVAVESGVPEQ
                     PFGSEETRAGARNRVGNARRLHPQADFWIGRKEGAIGVFTAGKLTRSSVYYQAVILAL
                     SPFHNAVYR"
     gene            complement(12109..12435)
                     /gene="trpR"
                     /locus_tag="OQP62_000013"
     CDS             complement(12109..12435)
                     /gene="trpR"
                     /locus_tag="OQP62_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon repressor"
                     /protein_id="HCS1719679.1"
                     /translation="MTQHSPYSSAIAEQRNQEWLRFVELLRQAYAEDLHLPLLQLMLT
                     PDEREALGTRVRIIEELLRGEMSQRELKTELGAGIATITRGSNSLKSAPVELRHWLEQ
                     ILLKSA"
     gene            complement(12493..14430)
                     /gene="sltY"
                     /locus_tag="OQP62_000014"
     CDS             complement(12493..14430)
                     /gene="sltY"
                     /locus_tag="OQP62_000014"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase"
                     /protein_id="HCS1719680.1"
                     /translation="MDRAKPFVWRLVAASVCLLTFCHLARADSLEEQRNRYAQIKQAW
                     DNRQMDVVEQMMPGLKDYPLYPYLEYRKITDDLMNQPAIAVTQFVRANPTLPPARTLQ
                     SRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWSTGQTEAAWQGAKDLWLTGK
                     SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAEYQTIASAI
                     ITLANDPNNVLTFARTTGATDFTRQMAEVAFASVARQDAENARLMIPSLVQAQKLNEE
                     QTQALRDIVAWRLMGNDVTDAQAKWRDDAIMRSQSTSLIERRVRMALGMGDRRGLNTW
                     LARLPMEAKEKDEWRYWQADLLLERGRDAEAKEILHALMQKRGFYPMVAAQRLGEEYT
                     LKIDKAPANVNSALTQGPEMARVRELMYWNLDNTARSEWANLVKSRSKSEQAQLARYA
                     FNQHWWDLSVQATIAGKLWDHLEERFPLAYNDLFTRYTRGKDISQSYAMAIARQESAW
                     NPKVKSPVGASGLMQIMPGTATHTVKMFSIPDYRGPGQLLEPETNINIGTSYLQYVYQ
                     QFGNNRIFASAAYNAGPGRVRTWLGNSAGRIDAVAFVESIPFSETRGYVKNVLAYDAY
                     YRHFMGQKEALMSDSEWQRRY"
     gene            14639..16306
                     /gene="ettA"
                     /locus_tag="OQP62_000015"
     CDS             14639..16306
                     /gene="ettA"
                     /locus_tag="OQP62_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017145039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HCS1719681.1"
                     /translation="MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAG
                     KSTLLRIMAGLDKDIEGEARPQPGIKIGYLPQEPQLNPEHTVRESIEEAVSEVVNALK
                     RLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAADALRLPDWDAKV
                     EKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHD
                     RYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASAEAARRKSIEKELEWV
                     RQGAKGRQSKGKARLARFEELNSVEYQKRNETNELFIPPGPRLGDKVIEVSNLRKSYG
                     DRVLIDDLSFSVPKGAIVGIIGPNGVGKSTLFRMMSGQEQPDSGTITLGETVKLASVD
                     QFRDAMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGER
                     GRLHLAKLLQVGGNVLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIA
                     THILDYQDEGKVEFFEGNFTEYEEYKKRTLGAEALEPKRIKYKRIAK"
     gene            complement(16424..17656)
                     /gene="nadR"
                     /locus_tag="OQP62_000016"
     CDS             complement(16424..17656)
                     /gene="nadR"
                     /locus_tag="OQP62_000016"
                     /EC_number="2.7.1.22"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463436.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional transcriptional
                     regulator/nicotinamide-nucleotide
                     adenylyltransferase/ribosylnicotinamide kinase NadR"
                     /protein_id="HCS1719682.1"
                     /translation="MSSFDYLKTAIKQQGCTLQQVADASGMTKGYLSQLLNAKIKSPS
                     AQKLEALHRFLGLEFPRRQKNIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGYDD
                     TRDRGLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSNG
                     IKAFMAEKGIQPSWIYTSEEADAPQYLEHLGIETVLVDPERTFMNISGAQIRENPFRY
                     WEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDE
                     MALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVTTQAFCKKYEGREHPFVQALI
                     DEYRFDLVILLENNTPWIADGLRSLGSSVDRKAFQNLLVEMLKENNIEFVHVKEADYD
                     GRFLRCVELVKEMMGEQG"
     gene            complement(17807..19189)
                     /gene="radA"
                     /locus_tag="OQP62_000017"
     CDS             complement(17807..19189)
                     /gene="radA"
                     /locus_tag="OQP62_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001399683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HCS1719683.1"
                     /translation="MAKAPKRAFVCNECGADYPRWQGQCSACQAWNTITEVRLAASPT
                     VARNERLSGYAGSAGVSKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGG
                     NPGAGKSTLLLQTLCKLAEQMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIE
                     QICLIAEEEQPKLMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV
                     GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQG
                     LREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLE
                     QNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQ
                     DLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKPPEGMQVFGVKKL
                     ADALSVFDDL"
     gene            complement(19273..20241)
                     /gene="serB"
                     /locus_tag="OQP62_000018"
     CDS             complement(19273..20241)
                     /gene="serB"
                     /locus_tag="OQP62_000018"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase"
                     /protein_id="HCS1719684.1"
                     /translation="MPNITWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYG
                     RGLDKQRLTQYQTKLGAAMVIVAAWCVEDYQVIRLAGSLTPRATRLAHEAQLDVAPLG
                     KIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEKVAEVTERAMRGELDFTASLRS
                     RVATLKGADADILRQVRGNLPLMPGLTQLVLKLEALGWKIAIASGGFTFFADYLRDQL
                     RLTAAVANELEIMDGKFTGHVIGDIVDAEYKANTLLRLAQEHDIPLAQTVAIGDGAND
                     LPMIKAAGLGIAFHAKPKVNEKTEITIRHADLMGVFCILSGSMNQK"
     gene            20358..21002
                     /locus_tag="OQP62_000019"
     CDS             20358..21002
                     /locus_tag="OQP62_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463433.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtjB family periplasmic protein"
                     /protein_id="HCS1719685.1"
                     /translation="MARAKLKFRLHRAVIVLFCLTLLVALMQGASWFSQNHQRQRNPQ
                     LEELARTLARQVTLNIAPLMRSETPDENRINAVLRQLTQESHILDAGVYDEQGDLITR
                     AGESVNVRDRLALDGKKAGSYFNQQIVEPIQGKNGPLGYLRLTLDTHTLATEAKQVDN
                     TTNILRLMLLLSLAIGVVLTRTLLQGKRTRWQQSPFLLTASKPVPEEEEREEKE"
     gene            21036..22052
                     /gene="lplA"
                     /locus_tag="OQP62_000020"
     CDS             21036..22052
                     /gene="lplA"
                     /locus_tag="OQP62_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase LplA"
                     /protein_id="HCS1719686.1"
                     /translation="MTTLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTV
                     VIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTIST
                     HIVLAALNSLGVMADASGRNDLVVKTPDGDRKVSGSAYRETKDRGFHHGTLLLNADLS
                     RLANYLNPDKKKLAAKGITSVRSRVANLTELLPGITHEQVCQAVTEAFFAHYGERIDA
                     EVISPDKTPDLPNFTETFARQSSWEWNFGQAPAFSHLLDERFTWGGVELHFDVEKGVI
                     TRAQAFTDSLNPAPLEALAGRLQGCQYRADKLQETCEALIATFPEQESELRELANWVA
                     GAVR"
     gene            complement(22143..22628)
                     /locus_tag="OQP62_000021"
     CDS             complement(22143..22628)
                     /locus_tag="OQP62_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000006255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1719687.1"
                     /translation="MSNYRRYYINGGTWFFTVNLKNRKSDLLVRQIAELRSAIRRVKN
                     TKPFQIDAFVVLPEHLHCIWTLPENDCDFSSRWRELKKLFTKSIMRHDVWQPRFWEHT
                     IRDEKDFRRHVDYLYFNPVKHGWVRRVQDWPFSTFHRDVRNGVYPVDWAGEVRDLDAG
                     E"
     gene            complement(22835..23554)
                     /gene="deoD"
                     /locus_tag="OQP62_000022"
     CDS             complement(22835..23554)
                     /gene="deoD"
                     /locus_tag="OQP62_000022"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HCS1719688.1"
                     /translation="MATPHINAEMGDFADVVLMPGDPLRAKHIAETFLEDVREVNNVR
                     GMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVRMDVKLR
                     DVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGVDARVGNLFSADLF
                     YSPDGEMFDVMEKYGVLGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAER
                     QTTFNDMIKIALESVLLGDKE"
     gene            complement(23764..24987)
                     /gene="deoB"
                     /locus_tag="OQP62_000023"
     CDS             complement(23764..24987)
                     /gene="deoB"
                     /locus_tag="OQP62_000023"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HCS1719689.1"
                     /translation="MKRAFIMVLDSFGIGATEDADRFGDVGSDTLGHIAEACAKGEAD
                     NGRKGPLNLPNLTRLGLVKAHEGSTGKIAAGMDGNADVIGAYAWAHELSSGKDTPSGH
                     WEIAGVPVLFDWGYFSDHENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEH
                     MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFIG
                     DKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKQGHVVSVGKIADIYANCGITKKVKAT
                     GLDALFDATLKEMKEAGDKTIVFTNFVDFDSSWGHRRDIAGYAAGLELFDRRLPELME
                     LVGEDDILILTADHGCDPSWTGTDHTREHIPVLIYGPKVKPGSLGHRETFADIGQTLA
                     TYFGTSPMDYGKNML"
     gene            complement(25039..26361)
                     /gene="deoA"
                     /locus_tag="OQP62_000024"
     CDS             complement(25039..26361)
                     /gene="deoA"
                     /locus_tag="OQP62_000024"
                     /EC_number="2.4.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="HCS1719690.1"
                     /translation="MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAM
                     TIFFHDMTMPERVSLTMAMRDSGTVLDWKSLNLNGPIVDKHSTGGVGDVTSLMLGPMV
                     AACGGYVPMISGRGLGHTGGTLDKLEAIPGFDIFPDDNRFREIIQDVGVAIIGQTSSL
                     APADKRFYATRDITATVDSIPLITGSILAKKLAEGLDALVMDVKVGSGAFMPTYELSE
                     ALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVT
                     MALCVEMLISGQLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPSDFVENYDKYL
                     PTAMLSKAVYADTEGFISAMDTRALGMAVVSMGGGRRQASDTIDYSVGFTDMARLGDS
                     IDGQRPLAVIHAKDEASWQEAAKAVKAAIILDDKAPASTPSVYRRITE"
     gene            complement(26484..27263)
                     /gene="deoC"
                     /locus_tag="OQP62_000025"
     CDS             complement(26484..27263)
                     /gene="deoC"
                     /locus_tag="OQP62_000025"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005097947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HCS1719691.1"
                     /translation="MTDLKASSLRALKLMDLTTLNDDDTNEKVIALCHQAKTPVGNTA
                     AICIYPRFIPIARKTLKEQGTPDIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVD
                     VVFPYRALIAGNEQVGFDLVKACKDACAAANVLLKVIIETGELKEEALIRKASEISIK
                     AGADFIKTSTGKVPVNATPESARIMMEVIRDMGVSKTVGFKPAGGVRTAEDAQKFLAI
                     ADELFGANWADSRHYRFGASSLLASLLKALGHGDGKSASSY"
     gene            27523..29073
                     /locus_tag="OQP62_000026"
     CDS             27523..29073
                     /locus_tag="OQP62_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjI family glycine radical enzyme"
                     /protein_id="HCS1719692.1"
                     /translation="MPASCETALQQRCQQIVTSPVLTPEQKRHFLALEAENALPYPTL
                     PEDARQALDEGVICDMFEGHAPFKPRYVLPDYARFLANGSQWLELEGAKDLDDALSLL
                     TILYHHVPSVTSMPVYLGQLDALLQPYVRILTQDAIDIRIKRFWRYLDRTLPDAFMHA
                     NIGPADTPVTRAILRADAELKQVAPNLTFIYDAEITPDDLLLEVAKNICECSKPHISN
                     GPVNDKIFTKGHYGIVSCYNSLPLAGGGSTLVRLNLKAVAERSTSVDDFFSRTLPHYC
                     RQQIAIINSRCEFLYEKSHFFENSFLVQEGLIDPERFAPMFGMYGLAEAVNLLCENAG
                     LTARYGKNETANELGYRISAQLADFVENTPVKYGRKQRALLHAQSGISSDIGTTPGAR
                     LPYGDEPDPITHLQTVAPHHAFYHAGISDILTLDETIKRNPQALVQLCLGAFKAGMRE
                     FTANVSGNDLVRVTGYMVRLSDLAKFRAEGSRTNTTWLGEEAARNTRILERQPRVVSH
                     EQQMRFSQ"
     gene            29045..29908
                     /locus_tag="OQP62_000027"
     CDS             29045..29908
                     /locus_tag="OQP62_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjW family glycine radical enzyme activase"
                     /protein_id="HCS1719693.1"
                     /translation="MNNRCALVSKIIAFSCVDGPGSRLALFLQGCNLRCKNCHNPWTM
                     GRCNDCGECVSQCPHHALSIDGGKVVWRSDVCEQCDTCLKMCPQQATPMAQTMSIDDV
                     LRHIRKASLFIEGITVSGGEATTQLPFIVALFTALKADPQLQRLTCLVDSNGQLSETG
                     WQKLLPVCDGVMLDLKAWKSECHHRLTGRDNTHIKHSIRFLAARGKLAELRLLVIPGQ
                     VDYAAHIDSLAAFITSLGEVPVRLNAFHAHGVYGEAKAWPGATPQEVERLADGLRARG
                     VAKLILPALYL"
     gene            complement(29941..30714)
                     /locus_tag="OQP62_000028"
     CDS             complement(29941..30714)
                     /locus_tag="OQP62_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS1719694.1"
                     /translation="MSWRFIDTHCHFDFPPFTGDERASIQRACEAGVEKIIVPATEAA
                     HFPRVLALAARFPSLYAALGLHPIVIERHADDDPDKLQQALAQQQNVVAVGEIGLDLY
                     RDDPQFARQERFLDAQLQLAKRYDLPVILHSRRTHDKLAMRLKRQSLPQTGVVHGFSG
                     SLQQAERFVQLGYKIGVGGTITYPRASKTRDVMARLPLDALLLETDAPDMPLKGFQGQ
                     PNRPEQAARVFDALCELRPEPAEVIADTLYRNTVTLFRL"
     gene            complement(30711..31784)
                     /locus_tag="OQP62_000029"
     CDS             complement(30711..31784)
                     /locus_tag="OQP62_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin family protein"
                     /protein_id="HCS1719695.1"
                     /translation="MGQRIPVTLGNIAPLSLTPFRSGRMALVCEGGGQRGIFTAGVLD
                     EFMRAQFNPFHLYFGTSAGAQNLSAYLCNQPGYGRKVIMRYTTRREFFDPLRFVRGGN
                     LIDLDWLVESTAARMPLQMDTSARLFDSGKSFYMCACRGDDYTPGYFSPTKQNWLDII
                     RASSAIPGFYRTGVTLEGINYLDGGISDAIPVQEAAKRGAKTIVVIRTVPSQMYYTPQ
                     WFKRMERWLGESSLQPLVNLVQHHETSYSAIQQFIEKPPGKLRIIEIYPPKPLHSMAL
                     GSRIPALREDYKTGQLCGRYFLATVGKLLAATPPLLRHSSRIAVPETVVVPPAPVAND
                     THVAEVISAPQANDTTFTDEDLA"
     gene            complement(31908..32069)
                     /locus_tag="OQP62_000030"
     CDS             complement(31908..32069)
                     /locus_tag="OQP62_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HCS1719696.1"
                     /translation="MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIVLFLV
                     SLFMGRKRP"
     gene            complement(32198..32815)
                     /gene="osmY"
                     /locus_tag="OQP62_000031"
     CDS             complement(32198..32815)
                     /gene="osmY"
                     /locus_tag="OQP62_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone OsmY"
                     /protein_id="HCS1719697.1"
                     /translation="MTMTRLKISKTLLAVMLTSAVATGSAFAENATTDKAQSGTETAG
                     QKVDSSMNKVGNFMDDSAITAKVKAALVDHDNIKSTDISVETNQKVVTLSGFVESQAQ
                     AEAAVKVAKGVEGVTSVSDKLHVRDNKEGSVKGYAGDTATTSEVKAKLLADDLVPSRK
                     VKVETTDGVVQLSGTVETQEQSDRAESIAKAVDGVKSVKNDLKVQ"
     gene            complement(33217..34806)
                     /gene="prfC"
                     /locus_tag="OQP62_000032"
     CDS             complement(33217..34806)
                     /gene="prfC"
                     /locus_tag="OQP62_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HCS1719698.1"
                     /translation="MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAG
                     TVKGRGSSQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRT
                     LTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVEN
                     ELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQTGKGHTIQEVRIVKGLNNPDLDAA
                     VGEDLAQQLRDELELVQGASNEFDEELFLAGEITPVFFGTALGNFGVDHMLDGLVAWA
                     PAPMPRQTDTRTVEASEERFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQV
                     RTGKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPN
                     FAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVV
                     ARLKSEYNVEAIYESVNVATARWVESADAKKFEEFKRKNETQLALDGGDNLTYIAPTM
                     VNLNLTQERYPDVQFRKTREH"
     gene            complement(34898..35575)
                     /gene="yjjG"
                     /locus_tag="OQP62_000033"
     CDS             complement(34898..35575)
                     /gene="yjjG"
                     /locus_tag="OQP62_000033"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HCS1719699.1"
                     /translation="MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQA
                     VNKPLWVDYQNGAITSLQLQHARFQSWAERLNVAPGRLNDAFISAMAEICSPLPGAVS
                     LLNAIRGQAKIGIITNGFTALQQTRLERTGLREYFDLLVISEQVGVAKPDPKIFNYAL
                     EQAGNPDRSRVLMVSDTAESDILGGINAGLSTCWLNAHHREQPAGIHPTWTVASLSEL
                     EQLLCKH"
     gene            complement(35597..36043)
                     /gene="rimI"
                     /locus_tag="OQP62_000034"
     CDS             complement(35597..36043)
                     /gene="rimI"
                     /locus_tag="OQP62_000034"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HCS1719700.1"
                     /translation="MNTISILSTTDLPAAWQIEQRAHAFPWSEKTFFGNQGERYLNFK
                     LTADDRMAAFAITQVVLDEATLFNIAVDPDFQRRGLGRMLLEHLIDELEKRGVVTLWL
                     EVRASNAAAIALYESLGFNEATIRRNYYPTAQGHEDAIIMALPISM"
     gene            complement(35988..36425)
                     /locus_tag="OQP62_000035"
     CDS             complement(35988..36425)
                     /locus_tag="OQP62_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit psi"
                     /protein_id="HCS1719701.1"
                     /translation="MTSRRDWQLQQLGITQWALRRPGALQGEIAISLPAHVRLIVVAE
                     ELPALNEPLMRDILRALTVSPDQVLPLTPERVAMLPQGSRCNSWRLGTDAPLQLEGAQ
                     VTTPAFNELRVNPAARAALWQQICEHEHDFYPQHDRSPRSLAD"
     gene            36528..37556
                     /gene="rsmC"
                     /locus_tag="OQP62_000036"
     CDS             36528..37556
                     /gene="rsmC"
                     /locus_tag="OQP62_000036"
                     /EC_number="2.1.1.172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1207)-N(2))-methyltransferase
                     RsmC"
                     /protein_id="HCS1719702.1"
                     /translation="MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARFECAASRA
                     YTQQFHHWQALSRQMGDNVRFSLVAQASDVADCDTLIYYWPKNKPEAQFQLMNILSLM
                     PVGSDVFVVGENRSGVRSAEPMLADYAPLNKVDSARRCGLYHGRLEKQPQFSLESWWA
                     EYNIDGLTIKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAALASHS
                     PKVRLTLCDVSAPAVEASRATLAANGLEGEVFASNVFSEVKGRFDMIISNPPFHDGMQ
                     TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPKILDETFGFHEVIAQTGRFKVYRI
                     VMTRQAKK"
     gene            37747..37833
                     /locus_tag="OQP62_000037"
     tRNA            37747..37833
                     /locus_tag="OQP62_000037"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:37781..37783,aa:Leu,seq:cag)
     gene            37861..37947
                     /locus_tag="OQP62_000038"
     tRNA            37861..37947
                     /locus_tag="OQP62_000038"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:37895..37897,aa:Leu,seq:cag)
     gene            37979..38065
                     /locus_tag="OQP62_000039"
     tRNA            37979..38065
                     /locus_tag="OQP62_000039"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:38013..38015,aa:Leu,seq:cag)
     gene            complement(38097..38333)
                     /locus_tag="OQP62_000040"
     CDS             complement(38097..38333)
                     /locus_tag="OQP62_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1435 domain-containing protein"
                     /protein_id="HCS1719703.1"
                     /translation="MLQRTLGSGWGVLLPGVIIVGLAFIGLSAYALKLLIVSGLLLSA
                     LMLYHKQLRHFVLLPSCIALIGGMMLAMMNWNQG"
     gene            38584..39648
                     /locus_tag="OQP62_000041"
     CDS             38584..39648
                     /locus_tag="OQP62_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HCS1719704.1"
                     /translation="MTTPSWRSLRIKKYQFSLRLFLFLSAVSALFTLVFPLYQINVFC
                     TPMIGIVGLSVLLLIWHGKYGQKRINLPFISLLFGGIWAARIALKYPALGHYDFSFLL
                     ISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLALPMVGIAIQ
                     HVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEH
                     YVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTA
                     EPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRNIGDAIEKADKAL
                     YEAKHLGRNHILVSDDMRAL"
     gene            39769..40557
                     /gene="fhuF"
                     /locus_tag="OQP62_000042"
     CDS             39769..40557
                     /gene="fhuF"
                     /locus_tag="OQP62_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore-iron reductase FhuF"
                     /protein_id="HCS1719705.1"
                     /translation="MAYRSAPIADDIIWRAAPQPEDASLADAVRETIASTRQHLLDFI
                     RLDETPPPTAMTLAQWTRPATFRSLLAAYSDHIYRHTPGLPRENKPLLSLWAQWYIGL
                     MTPPLMLALLTQARAINVSAEHIHVEFHETGRAACFWLDVHQDNLATERSPEERMETL
                     IVSALQPVIQALEATGDINAKLIWSNTGYLINWYLTEMKPLLGEALLATLRQRCFFEK
                     QLSDGQDNPLWRTVVMRDGLLVRRTCCQRYRLPDVQQCGDCTLK"
     gene            40708..41166
                     /locus_tag="OQP62_000043"
     CDS             40708..41166
                     /locus_tag="OQP62_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HCS1719706.1"
                     /translation="MSLQSVRQFLAAHAPDIEIIELNQSTATVELAAKAHNVEPGQIA
                     KTLSLKVKDTIILVVAKGDARLDNKKLKTTFGAKARMLSSDEVVNATGHPVGGVCPFG
                     LEHPLPVYCDISLKGYNEVLPAAGATHSAVRITPERMAELTSATWVDVCQ"
     gene            complement(41217..41891)
                     /gene="bglJ"
                     /locus_tag="OQP62_000044"
     CDS             complement(41217..41891)
                     /gene="bglJ"
                     /locus_tag="OQP62_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463407.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator BglJ"
                     /protein_id="HCS1719707.1"
                     /translation="MENRISKRNVALVEKCVMSTIGIKGLFDAMPDCRHTLHIFSKPS
                     AFYKAALKTPFSAVIFSLSALRTERRTGLSSLTELAINYPHMRRLVIADDDAEARLIS
                     ALSPLPLDGVISKASPLDVLQDALFTSLNSARRTTERTDNLWELHQNCMLSPTEREIL
                     RFMSNGYSMPQIAVQLERNIKTIRAHKFNVMSKLGVSSDAGLLDAADILLYLRAGDAT
                     ALQHRV"
     gene            complement(41852..42577)
                     /locus_tag="OQP62_000045"
     CDS             complement(41852..42577)
                     /locus_tag="OQP62_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HCS1719708.1"
                     /translation="MLPGCCKNGLIISKTPLIQEGLKGAITGNFPDYKLAYCRTIEEL
                     TLLQLRRSNLVIADLAVNNASPRAICEYFYSLISQYRDIHWVFLVPKSCYPHAVDLLM
                     GPVSTLLSDEEPIENLISVIHAGNARSERISKTLLSPQVPSEIQQSHDRPIVLTLSER
                     KVLRLLGKGWGINQIAALLKKSNKTISAQKNSAMRRLSIHSNAEMYAWINSSQGAREL
                     NLPSVYGETMEWKTESAREMLRS"
     gene            43290..44066
                     /locus_tag="OQP62_000046"
     CDS             43290..44066
                     /locus_tag="OQP62_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HCS1719709.1"
                     /translation="MQEEQSIQRAVTRLCIQCGLLLLQHGAESALVDELSTRLGLALG
                     IDSVESAISSNAIVLTTIKDGQCLTSTRKNQDRGINMHVVTEVQHIVILAEHRLLDYK
                     GVEKRFSQLRPLRYPRWLVAFMVGLSCSCFCKLNNGGWDGAVITFFASMIAMYIRQML
                     AQRHLHPQINFCITAFVATTISGLMLTLPAFSQTPTIAMAASVLLLVPGFPLINSVAD
                     MFKGHINTGLARWAIASLLTLATCVGVVMSMTIWGLRGWV"
     gene            44057..44530
                     /locus_tag="OQP62_000047"
     CDS             44057..44530
                     /locus_tag="OQP62_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter"
                     /protein_id="HCS1719710.1"
                     /translation="MGIIDFLLALMQDMILSAIPAVGFAMVFNVPHRALPWCALLGAL
                     GHGLRMLMMSAGFNIEWSTFMASLLVGSIGIQWSRWYLAHPKVFTVAAVIPMFPGISA
                     YTAMISAVKISHLGYSEPMMITLLTNFLKASSIVGALSIGLSVPGLWLYRKRPRV"
     gene            44623..45162
                     /gene="dnaT"
                     /locus_tag="OQP62_000048"
     CDS             44623..45162
                     /gene="dnaT"
                     /locus_tag="OQP62_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein DnaT"
                     /protein_id="HCS1719711.1"
                     /translation="MSSRILTSDVIGIDVLLHDHHAVLAKSTGGAVAVFANNAPAFYA
                     VTPARMAELLALEEKLSRPGSDVALDAQFYEEPEAAPVAIPCGKFAMYPAWQPDADFQ
                     RQAALWGVALREPVTAEELAAFIAYWQAEGKVFHHIQWQQKLARSVQISRSSNGGMPQ
                     RDINSVSEPDNHIPPGFRG"
     gene            45165..45902
                     /gene="dnaC"
                     /locus_tag="OQP62_000049"
     CDS             45165..45902
                     /gene="dnaC"
                     /locus_tag="OQP62_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication protein DnaC"
                     /protein_id="HCS1719712.1"
                     /translation="MKNVGDLMQRLQKMMPAHITPAFKTGEELLAWQKEQGEIRAAAL
                     ARENRAMKMQRTFNRSGIRPLHQNCSFDNYRVECDGQMNALSKARQYVDEFDGNIASF
                     VFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNRETSEEQLLNDL
                     SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKMLGERVM
                     DRMRLGNSLWVNFSWDSYRSRVTGKEY"
     gene            45960..46421
                     /locus_tag="OQP62_000050"
     CDS             45960..46421
                     /locus_tag="OQP62_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2501 domain-containing protein"
                     /protein_id="HCS1719713.1"
                     /translation="MNTAKHVLCCAAIASVLISTSGIAASQLSAQGANAQQGGMSLSA
                     LTGLLSRGAQSLSADNMNNAAGILQYCAKQKLASATNVENVKNQILNKLGLDTTQQEQ
                     DTNYLNGLQGLLKTKDGQQLNLNNIGSTPLAEKVKTKACDLVLQQGLNFLS"
     gene            46704..48995
                     /gene="opgB"
                     /locus_tag="OQP62_000051"
     CDS             46704..48995
                     /gene="opgB"
                     /locus_tag="OQP62_000051"
                     /EC_number="2.7.8.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017465680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerol--membrane-oligosaccharide
                     glycerophosphotransferase"
                     /protein_id="HCS1719714.1"
                     /translation="MSELLSVALFLASVLIYAWKAGRNTWWFAATLTVLGLFVILNIT
                     LYASDYFTGDGINDAVLYTLTNSLTGAGVGKYILPGIGIALALVAVFGALGWVLRRRR
                     HHPHHVGYSLLALLLALGSVDASPAFRQITELVKSQMRDGDPDFAVYYKEPAKTIPHP
                     KLNLVYIYGESLERTYFDNDAFPNLTPELGALKNEGLDFSHTMQLPGTDYTIAGMVAS
                     QCGIPLFAPFEGNASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKS
                     HGFDHLYGAEELKTVVADPSYRNDWGFYDDTVLDEAWKKFEALSRSGQRFSLFTLTVD
                     THHPDGFISRTCNRKRYDYDGKPNQSFSTVSCSQENIAEFINKIKASPWFKDTVIVVS
                     SDHLAMNNTAWKYLNKQDRNNLFFILRGDKPQQETLAVKRNTMDNGATVLDILGGDNF
                     IGLGRSSLSGQSLSEVFLNVKEKVLAMKPDIIRLWNFPKEIKDFTVDRDKNMIAFSGS
                     HFRLPLLLRVSDKRVEPLPESEYSAPLRFQLADFAPRDNFVWIDRCYKMAQLWAPALA
                     LSTDWCVSQGQLGGQQTVQHVDKAQWQGKTAFKDTMIDMERYKGNVDTLKIVDNDIRY
                     KADSFIFNVAGAPEEVKQFSGISRPESWGRWSNAQLGDEVKIEYKAPLPKKFDLVITA
                     KAFGDNANRPIPVRVGNEEQTLVLGHDVSTITLHFNNPTDANTLVIAPPAPVSTNEGN
                     ILGHSPRKLGIGMVEIKVVNVES"
     gene            complement(49164..50824)
                     /gene="tsr"
                     /locus_tag="OQP62_000052"
                     /pseudo
     CDS             complement(49164..50824)
                     /gene="tsr"
                     /locus_tag="OQP62_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463392.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
     gene            51191..53341
                     /gene="btsT"
                     /locus_tag="OQP62_000053"
     CDS             51191..53341
                     /gene="btsT"
                     /locus_tag="OQP62_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate/proton symporter BtsT"
                     /protein_id="HCS1719715.1"
                     /translation="MDTKKIFKHIPWVILGIIGAFCLSVVALRRGEHVSALWIVVASV
                     SVYLVAYRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAAIAGAG
                     PLVGPVLAAQMGYLPGTLWLLAGVVLAGAVQDFMVLFISSRRNGASLGEMIKEEMGTV
                     PGTIALFGCFLIMIIILAVLALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFLRPG
                     RVGEVSVIGIVLLVASIYFGGVIAHDPYWGPALTFKDTTITFALIGYAFVSALLPVWL
                     ILAPRDYLATFLKIGVIVGLALGIVILNPELKMPALTQYVDGTGPLWKGALFPFLFIT
                     IACGAVSGFHALISSGTTPKLLACETDARFIGYGAMLMESFVAVMALVAASIIEPGLY
                     FAMNTPPAGLGITMPNLHEMGGENAPLIMAQLKDVTAHAAATVSSWGFVISPEQILQT
                     AKDIGEPSVLNRAGGAPTLAVGIAHVFHKVLPMADMGFWYHFGILFEALFILTALDAG
                     TRSGRFMLQDLLGNFVPFLKKTDSLVAGIIGTAGCVGLWGYLLYQGVVDPLGGVKSLW
                     PLFGISNQMLAAVALVLSTVVLIKMQRTKYIWVTVIPAVWLLICTTWALGLKLFSANP
                     QMEGFFYMANLYKEKIANGTNLTAQQIANMNHIVVNNYTNAGLSILFLVVVYSIIFYG
                     FTTWMKVRNSDKRTDKETPYVPVPEGGVKISSHH"
     gene            53436..53639
                     /locus_tag="OQP62_000054"
     CDS             53436..53639
                     /locus_tag="OQP62_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HCS1719716.1"
                     /translation="MFDTLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMTY
                     EEFFRERQQARYGGDGKGGMRCC"
     gene            53650..54606
                     /gene="yjiA"
                     /locus_tag="OQP62_000055"
     CDS             53650..54606
                     /gene="yjiA"
                     /locus_tag="OQP62_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HCS1719717.1"
                     /translation="MTPIAVTLLTGFLGAGKTTLLRHILNEQHGFKIAVIENEFGEVS
                     VDDQLIGDRATQIKTLTNGCICCTRSNELEDALLDLLDSRDRGDIAFDRLVIECTGMA
                     DPGPIIQTFFYHDVLCERYLLDGVIALVDAVHANEQMNQFTIAQSQIGYADRILLTKT
                     DVAGDSEKLRERLARINARAPVYTVVHGDIDLSQLFNTSGFMLEENVLASQPRFHFIA
                     DKQNDVSSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGV
                     QRLYSADWDRPWGDETPHSTLVFIGIQLPEDEIRAAFAGLRK"
     gene            complement(54681..54983)
                     /locus_tag="OQP62_000056"
     CDS             complement(54681..54983)
                     /locus_tag="OQP62_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HCS1719718.1"
                     /translation="MSMVKHKRGNASALSAQHEAELKALAKKSDDEIDYSDIPASEDG
                     QWSEAVRGKFFRPLKTQASVRIDADVMEWLKRPGKGYQTRLNAILREAMLREQNKK"
     gene            complement(54970..55257)
                     /locus_tag="OQP62_000057"
     CDS             complement(54970..55257)
                     /locus_tag="OQP62_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HCS1719719.1"
                     /translation="MPMEFEWDANKAKSNLRKHGVRFEDAVLVFDDPRHLSRQERYEN
                     GEYRWQTLGLVHGIVVILVAHSVRFESGFEVIRIISARKADRKERNRYEHG"
     gene            complement(55510..56424)
                     /locus_tag="OQP62_000058"
     CDS             complement(55510..56424)
                     /locus_tag="OQP62_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HCS1719720.1"
                     /translation="MAVPTYDKFIEPVLRFLATRPEGALVREVREAAAEMLGLNEQQR
                     AEVITSGQLTYQNRTGWAHDRLKRAGLSQSLSRGKWCLTPAGMSWVASHPQPMTEQEV
                     SHFACDFNGVKLSKPADAVALDPQPESIEDDELARSSPDDRLEQALNEIRESVAEELL
                     ENLLQVSPARFEVIVLDVLHRLGYGGHRGDLQRVGGTGDGGIDGIISLDKLGLEKVYV
                     QAKRWKGTVGSAEVRGFYGALPEQKVKRGVFITTSGFTAHARDYANKVEGLVLVDGDR
                     LVHLMIDNDIGVSSRLLKLPKLDMDYFE"
     gene            56622..60131
                     /gene="hsdR"
                     /locus_tag="OQP62_000059"
     CDS             56622..60131
                     /gene="hsdR"
                     /locus_tag="OQP62_000059"
                     /EC_number="3.1.21.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system
                     endonuclease"
                     /protein_id="HCS1719721.1"
                     /translation="MNKSNFDFLKGVNDFIYAIACAAENNYPDDPNTTLIKMRMFGEA
                     TAKHLGQLLDIPVCENQHDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLDD
                     AQMCLRLGFRLSVWYYRLVTKDYDFPVPMFVLPEHGENLYHQEVLTLKQQLERQAQEK
                     VQSQAELEAQQQRLVALNGYIAILEGKQQETEAQTKARLAALEAQLAAKDAELAKQTE
                     QERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFAKGARPEPGV
                     NKAIAEWPTGTDETGKTGFADYVLFVGLKPIAVVEAKRKNTDVFSKLNESYRYSKYFD
                     NGFLRDTLLEHYAPDEVHDAVPEYEISWQDTSGKQRFKIPFCYSTNGREYRAAMKTKS
                     GIWYRDVRHTTNMSKALPEWHRPEELLDMLGSDPQKQNQWFAENPGMSELGLRYYQED
                     AVRAVEKAIVNGQQEILLAMATGTGKTRTAIALMFRLIQSQRFKRVLFLVDRRSLGEQ
                     ALGSFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVGR
                     YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHT
                     VEIFGEPVYRYTYRTAVIDGYLIDQDPPIQIVTRNAQDGVYLSEGEQVERLNPQGELI
                     NDTLADDQDFEVADFNRGLVIPAFNRAVCGELTKYLDPIGQQKTLVFCVTNAHADMVV
                     DELRTAFKKKYPQLEHDAIIKITGDADKDAKKVQSMIVRFNKERLPNIVVTVDLLTTG
                     VDIPSICNIVFLRKVKSRILYEQMKGRATRLCPSVGKTSFKIYDCVDIYSSLESVDTM
                     RPVVVRPQVELQTLVNEITDSETYKTIEADGRSFAEHSHEQLVAKLQRIIGLATYNRD
                     HSETVDKQVRRLDELCLDAAGVNFGGLASRLREKGPHWSAEIFNKLPGFIARLERLKT
                     DINALRDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDALVQHAPNAQPALQAVINR
                     PRDLTRKGLVELQEWFDRQHFEESSLRSAWKETRNEDIAARLIGHIRRAAVGDALKPF
                     DERVDHALARIKGENDWSPEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKSMLQ
                     RTFDDNLDSVLDKFSDYIWDELA"
     gene            60289..61686
                     /locus_tag="OQP62_000060"
     CDS             60289..61686
                     /locus_tag="OQP62_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001063188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HCS1719722.1"
                     /translation="MNNNDLVAKLWKLCDNLRDGGVSYQNYANELASLLFLKMCKETG
                     QEADYLPEGYRWDDLKSRIDQEQLQFYRKMLVHLGEDKKKLVQAVFHNVCTTITEPKQ
                     ITELVSNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII
                     HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV
                     PGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPQADIVATNPPFGSAAGTN
                     ITRTFVHPTSNKQLCFMQHIIETLRPGGRAAVVVPDNVLFDRVGLEIRRDLMDKCHLH
                     TILRLPTGIFYAQGVKTNVLFFTKGTVANPTQDKDCTDDVWVYDLRTNMPRFGKRTPF
                     TEQYLQPFETVYGEDPHGLSPRAEGEWSFNAEETEVADSEENKNTDQHQATSRWRKFS
                     REWIRTAKSDSLDIS"
BASE COUNT        14561 a        17062 c        15873 g        14213 t
ORIGIN      
        1 agatcttgct ctataaatcc agtcatctac cgtacttctt tagtggtatt ttattaaact
       61 ttgttaccgg gtccgaaact ggactgccgt tcaatattgc atcagaattt ttattgagtt
      121 catagttgat atacgtagaa tagccgcctg cttatctaca gaacagaaag aagcgcatac
      181 agagtaaaat ataatatttt attttatata gctatcttta tttttcagcg aatagaatca
      241 ggcaacaatt aatatgttta ataagaaaat tatcatcctg gcaatgttaa ctgccgtagc
      301 atccacaccg gtatttgccc agaacacgat tacgttcaat ggcaaaattt acgatcaggc
      361 gtgtacggtt caggttaatg gctccacgga taccaccatt gatttaggta attacagcaa
      421 agaacgcatc gcggaaaaag gcgccacaac cgattacgtg ccgtttaccg taagcctggt
      481 tagctgcccg gaagcaggga ctggcgtacc gacccaggcc atgttccgct tccacggcgc
      541 aacagatgat tccaacccaa cgtacttcaa aaacgcggac gaaggatcgg aaacgggcgc
      601 cgcgggtgtc ggtatttcta ttcagaacgc ttcacatagc gatgtgacag ataacacgga
      661 tgatgccgca gtaagcctgc caaccgacgg ctcgacagca gactttacct attacgccgc
      721 catggcaaac gatggttccg caaccgtaac cggtggagat gttagcactc aggttacgta
      781 taccgtttcg tatcagtaag gcattctcat cctgatgtgg acaggcagga tgccagtcca
      841 tagcgtaaaa catctttaca gagtaaaaaa tgaaacacat aaagaaatcc gtgttggtcg
      901 tattactgac aagccatgtt gcccatgcca gcattgttgt tggcggaacc cgactggttt
      961 tcgacggcaa taatgatgag tcgtcaatca atgtagagaa taaagacagc aaagcgaatc
     1021 ttgttcagtc atggttatcg gttgccgatc cccaggtcac aaataagcag gtgtttatta
     1081 tcaccccgcc tctttttcgc cttgatgccg ggcaaaagaa cagtattcgg gttattcgct
     1141 ctggcgcccc tctacctgca gatcgggagt ctatgtactg gctcaatatt aagggtattc
     1201 cttctattga tgataatgcc tccgcgaacc gcgtggaaat ctccattaat acccaaataa
     1261 agcttattta tcgaccgcca gcattaacca aatcaacgcc tgatagccag agccaacaat
     1321 taaaatggca gacggcaggg gatgttatta ccgtaaataa ccctaccccc tattatatga
     1381 actttgccag tgtgacgctt aacagccatg aagtgaaatc agcgaccttc gttccgccaa
     1441 aatcatcagc gtcatttaaa ttgagttcga ctgccgcccc tcatggtacg gtaacgtggc
     1501 gattaatcag cgattatggg atgagtttag agccgcattc cggttcattc tagccattaa
     1561 cgacttcact ttacttttac cctttcagga cttttactgt gcaattctcc agagtagagc
     1621 cccgttctca attagcgtta tcgtttctct ttatatgctg atccataaaa ccagcgttag
     1681 cgcatgatca ttttaatcca ttatcgttgg aaaatgatga accgggcgtg gagaatgtcg
     1741 atctatcggt tttcgaaaag gggggcaggc agaaggcacc tataatgttg atatttatat
     1801 taataacact aatgttgaaa caaaaaatat tgcctttaaa aataaaaaat cagcagataa
     1861 taagctctcc ctacagccat gtcttagcgt tgaacaactc aagcagtggg gcgtaaaaac
     1921 agaaaacttc cccgagctta aaaatgaccc aaacgggtgt accgatctta gtctgctggc
     1981 tggcgctgta gcaaagttta atgtcatcgg taaccggctg gatttagcga tccctcaaat
     2041 cgcgttgatc gccgacccgc gagaattcgt ccctaccagc aaatgggatg aaggcattaa
     2101 tgcttttttg ctgaactaca gttttaccgg atcgcaggat cacgatattg atgaaaaccg
     2161 gacggaaaat agcgaatacg ctaacctgcg ccctggtatt aacattggcg catggcgttt
     2221 tcgtaactac tcaacctgga atcatgatag cgatgggcaa aatagctggg attctgccta
     2281 cacctatgtt tctcgcgata tcgaattttt aaaaggacag ctgatcgccg gggaaaataa
     2341 cacgcccgca gacgtctttg acagtatttc atttaagggc gtacagatct cttctgatga
     2401 cgatatgttg ccggacagta tgaaagggtt cgccccggtc attcgcgggg tggccaaaag
     2461 cagcgcgcag gtaaccgttg aacaaaacgg ttataccatc tacaaaacta acgttccggc
     2521 gggcccattc gccatcaacg atctttatcc aaccggcggt tcgggcgacc tgtacgtcac
     2581 catcaaagaa tccgatggtt ctgaacagca tttcattgtg ccctacgcca gcgttccggt
     2641 attacagcgt gaaggccacc tgaaatacga cttgacggta ggccgcacgc gttcatcaga
     2701 tacgcattcc gcgcaacaga atttcgcaga actgacggcc ttatacggat tagcaggcgg
     2761 cgtaaccgcc tatggcggaa tagagagtac gctgagcaat gatgtttatc atgcggcgct
     2821 catcgggaca ggcttaaacc ttggcgatct gggcgcattg tctttagacg tcaccaactc
     2881 atggtcaaaa attaaagcag gcgatgtggt tagcgatacg cttaccggac agtcctggcg
     2941 tattcgttac agcaaagata ttcagtcaac aggcaccaat tttactgtcg ccggttaccg
     3001 ttattcgacc aaagattact acgctcttga ggatgtgctg gatacctata gcgataatag
     3061 tcactatgat catgtccgca atcgcaccga cctgtcgttg tcgcaagaca ttatctacgg
     3121 ttccatttca ctcactttat ataatgaaga ttactggaat gacactcata ccacatcatt
     3181 aggtattggc tataacaaca catggcataa cgtaagctat ggcattaact attcttatac
     3241 gctgaacgcc gataatactc aggatgaaga cgacgatacg gaagacagta atgaccagca
     3301 aatttcaatc aatattagta ttccgttaga tgcctttatg ccgtcaacgt atgccaccta
     3361 caatatgaac tccgcgaaag acggcgatat cacgcatact gtcggtttaa acggcacagc
     3421 gctggcacag aaaaatctct catggagcgt tcaggaaggt tattcctctc aagagaaagc
     3481 caccagcggt aatgtgagcg caacctataa cgggacgtat gcggatatta acggcgggta
     3541 tagctacgat aatcatatgc gtcgcctgaa ttatggcgtt cagggcggcg tactgctaca
     3601 tcgaaatggc ctgacactat cccagccaat ggacgacacc atcatattgg ttaaagcccc
     3661 tggcgcagca ggtgtccccg tgaataacga aacgggcgtg gacaccgatt ttcggggtta
     3721 tgccgtcgta cctaatgctt cgccttatca tcgtaatgaa gtgtctttag atacgacagg
     3781 cattagaaaa aatattgagc tcattgatac cagtaaaacg ctggtgccta cccgtggcgc
     3841 ggtggtcagg gctgaatata aaaccaatat tggctacaag gcattgatgg tattaacccg
     3901 cataaacaat ctgcctgttc cttttggcgc gaccgtctcg tctttaacaa aaccagacaa
     3961 tcacagcagt tttgttggtg atgcggggca agcctggtta accggactgg aaaaacaagg
     4021 gcggttatta gtgaagtggg ggccaacagc agcagaccgg tgtcaggtct cttatcgtat
     4081 accgagctcc ccctccgctt ctggcgtaga aatcttacac gagcaatgcc agtgattctg
     4141 gtgggataaa agatgaatat gaacagattt gctgcattag ccgccctgtt aacgttcacg
     4201 ggtctggcat catggtcgcc ctcgatcagc gcggcataca ataccgcaga tgccgtagac
     4261 attaacgtta cgggattaat ttatgccgat ccgtgtaccg tgacggtacc tgacacgatc
     4321 tctcttgggc aatatgcccg ggcggatatc gctgtggccg gtggcaatac cgccaccatt
     4381 cctttcacca taaaaatgac gaattgcccg gcaacgacca caaaagccgc gatttcattt
     4441 aacggcgtac cttatcccga tccgaattat gcttctgcga tttacgcaaa cagcgcggcc
     4501 aatccggcgc aggatttagg attacagctt tttaacctgg acagtaaaag tctggttaat
     4561 ctggccaata acgtcactta cacggtggat atcaacagta atacccatga agccaatttg
     4621 cctgtcgccg caaggatgta taccccgtat ggaaaagtca cggcagggga tttcacgtcc
     4681 gttgtgacga tcactatcgc atggcaataa tatttttcta tttcacctga tataaaagca
     4741 ggaatttttc atgagaaggt tatatctggc gcttattctg ctgttcgcgt attccggtca
     4801 tagttacgcc tcctgtaaac gttccggtaa tgaaggcgcg atcactatca ccccgccgtc
     4861 gcagcttgtg gtggatagcc acgcctatac cgcaggcgaa gtgttgtggc aatcgggctg
     4921 ggtttccacc tccgaagtca caatggatgg ctgtagtcgc gattataagg tcggttttta
     4981 tatgaacccg gtagcgcgca gtcaaataca tccgcgacaa tcaatgcgaa tgacgggaac
     5041 aacacgccgg tatttagcac cgggatttcc ggcgtgggca ttgcgattaa aacccaaacg
     5101 aatgctggcc cttacgataa tgtcatgcca atcgataata cgtaccataa tggcgatggc
     5161 aataaaaccc accatgcgat ggcccccgcc tacaatgttg aactggtcgc cttaggcggt
     5221 ccgatcacct ccggtaccgc gacattccaa agcccactgg cacgtgtatc ctttcgcgat
     5281 agcgcaacgg aaagctctgg cggcgatatc ctgacccatc tgtatttggg taatacgcaa
     5341 ttgatcatga aagcgatggg atgtcgggta gaaacacctg ccatcaccgt tgatttaggc
     5401 agcgtcaatt taggcagttt cgctaacagt caaaccgcgg gcacaggcaa gcaggatatc
     5461 ttattgacct gcgaacaagg caccgctatc tccgcatcgt taagcgccca accggccagc
     5521 ggaaataacc ctgataattc agtcatccag ttgagcaatg caagcgcgcc aaccagcgca
     5581 accggcgttg gcgtacagtt gggtattcag gcgccggact ctggtttctt taccgacagt
     5641 ttgccaatca atcaaaaaat tgatctcttt actcacacga ttaccaccaa tgccgatggc
     5701 agccagacgg ttaacggcgg aaccatgaat atgtcgacca ccctgaaaat tagcgcgcgc
     5761 tactataaaa ccgccgccac ggtaacggcc gggcaagcga atgccacggc aacattaaac
     5821 ctgacctata actgacggca tcacattttc tggcgctgcg cgggaaaacg ttaacgcgcg
     5881 cgcccgttag atttatttcc acaaacgtaa ttcgtcatct tttactggcg gtaatgactt
     5941 acgttgctga caagagagcg aataccagtc cagatggcgc gtcaggaaca tcacgccgcc
     6001 aagcgccagt agcagaacgc cggtacccag aagcaacgag ctatcttccg aacgcagtaa
     6061 cccccacatc acgccatcca gcgccaataa cgctaacgta aacagcacgc tattgcgcca
     6121 tcctttcagt accgcctgca aataaacgct attcatcaac gcgcccacta ggcttgcggc
     6181 gatccaggct ggcgtgaaac cgatatgttc cgacagtgcc agcaacagca ggtagaacat
     6241 caccagcgat aaccctacca gcagatactg catcgggtgt aatcgctgtc ccgtcagggt
     6301 ttcgaagaca aagaaagcca taaacgttag cgtaatcaac aaaatggcat atttcgtcgc
     6361 tctgtccgtc agttgatact gatcggctgg cgtcgataca gcgacgctaa acgccggtaa
     6421 gttgtcccaa tccacctttt gcgcatcagc aaactgttcg ccgagattcg tggcaaaccg
     6481 gctggtttgc cactgagcct gaaatcctga accgctgatt tcgcgtttac cgggaagaaa
     6541 atcccccaca aaatttgggt gcggccagtt actggtcagg gtcatttcac tgctacgccc
     6601 gacaggaacc agtgaaaagc tgccggttcc gcttaaattt aacgacatcg ccaacgtcag
     6661 gttgcgcgtc gcccactgac tgtccggtag cgggatatga atgccctctc tactttccgg
     6721 taagccggtc cccggttcta cagtgagcat ttcaccattc acctgcggcg cttttactgc
     6781 gctgataccg cgcgcatcgc cgacgcccac gacgataaag ggctttccaa gggtaatatt
     6841 cggtctgttc agctcatgca gacgggccac atcaaactct gcctttatcg ccatatcggt
     6901 atgccacacc tgcccctgat aaatacctat ttttcgcgct tcaacgtttt gattgccttc
     6961 gaccaatagc gactccggca gccaaaaata gagatagctg cgcttatact gaacctcttt
     7021 ctcctcttcc agcacggtat agagctctgt caccggaacc gccaccagcg ggccgacaac
     7081 cttttgcggg ccgctggtac tctgacgaat agcggcttct acatggcttc gataatcagc
     7141 acgctccacg atggtgtgcc gtaccatcat caggggaatt aacagcagga tcatggcgcc
     7201 gcctaacgta atcattttcc acaacagggg ggatttcaac atagcgttct cctttgcaat
     7261 gccagcagtg taagaacgcg atgtggggag aatttgaagt tatgtgaagt gacggtgaag
     7321 tgtcaacgag gccagcacgc cgccttcggg acggttgcac aacgtcacct caccgttgag
     7381 gagccgcgcc gcctcgctga caaacgccag cccaagcccg ctgcttttac gcccgttttc
     7441 acggggcaac gaatagaatc ggtcgaaaat gcgcggcagc gcaaaatcag gaataccaca
     7501 gccggaatcc gtcacctgca ggatcgcttt ctctcccatc ggctgagcgc ttaatgtgat
     7561 aacgccattt tcaggcgtaa agtcgatggc attgtccaac acattgccca gcgcctgcgc
     7621 cagaagctcc gcgtcggcga cgacaaccag cgaggaagga cgtagagtaa gcgtgatctt
     7681 ttttgccgcc aactgaatac tgcgcgcctc gctaagctgc gtaaatagct catcaacagc
     7741 aaccggcgcg agagggatat cctgtcggtt ttccagccgc gcctggcgca gcagggtttc
     7801 taccagcgcc tgcattcgcg tattttgcgc cagtatattc tctgtaaagc gggtaaccac
     7861 atccgcgggc ggtccttcac gcagaatctc cgccgcgccg cgtatcgccg ccagcggact
     7921 tttcagctca tgagtcaacg catacacgta ctgctcaatg tcattcttgc cttccagctt
     7981 aatgcgcata ctctccagcg cctgcgccag tttacgcagc tcgctgctgc ctaatgcagg
     8041 taacgcaagc gggcggtttt cggtgacgga atccgcatag cgcgtcaacc gggcgatgga
     8101 gcggttaatc caccagacca tccccgcgcc aatcgccagc gcaattccca gtaaaacggc
     8161 gctggcccac agaatgcgcc gttcgctgcg cttaatcacc ggcgccattg ccgcattcgg
     8221 tttgccgaca gtcaggacgc cgatgatccg tccatcgctg attatcggcg cggctacgta
     8281 catcacggtg ctattgggat cggcagaatc ttttgccgtg ctgcgggcgc catactgtcc
     8341 gcgcaacgta agccagacgt cattccagcg agaataatcc tgccccaccg ctttgttttc
     8401 cgaatcaaac aacaccttcc cctgcgcatc cgtcatgtag acatggtatt cattacgcac
     8461 tttgacgatc ccgctgatat tggcgcgaaa cgggcgatgt tgcagctggg cgaatgcttt
     8521 cgccaactgg ccgtcagtcg ggttgccgga aaggagatcg tcgcgggcca gcgccgccag
     8581 cagcgtcgcg gtgtcaatca gcgtcccttc cgtcgcgcgg cggacgcccg gctttatctc
     8641 ctgaacaaag atagacagca caaacacggc ggcgacggcg acaataagaa agtagcccag
     8701 cagcaaacgc attccgatgc gcatcagatg ctcctcaggc tgtatcccat tccacgatgc
     8761 gtgttaattg gcgagagatc cgggttgatc gcgcgtagtt tagcgcgcag ggttttgatg
     8821 tgcgtatcga ccgtccgatc gaaggtctct tgggcatcag accagacaat atccatcaat
     8881 tgctggcacg agtacacgcg ctccggcgac agcagcaggg ttttaaggag cagaaactca
     8941 taacgcgtca gcgagagcgg cgtaccaaac caggcgatct gcgccgccgg ttcattgaga
     9001 tcaaaatgtc cggtacgcac caccggcgac ggcgcagcaa actttttcac ccggcgcagc
     9061 agcgtgcgca cgcgggcgct cacttcgcgc ggcgagaacg gcttggcgac ataatcatct
     9121 gcgccgatct ccagaccaag caatcgatcc acttcatcgc tacgggcagt caggaaaaga
     9181 atcggcagcg ccggatgacg ctccagcaac tgccgacaca gctcaaagcc gctgatatcc
     9241 ggtagtccca catcgagaat caccgcatct ggccgttgct gacgcgcttt ttccagcgcg
     9301 ggcagcccgc gagcgaatag ctcaacggta aacccttcca gttgcagggt gtagatgagc
     9361 gtatcggcga ttccctgttc atcctcgact aaccagacct gcggttgctg catacgcttt
     9421 ccctgttatt gtcgccacgg catgaccggc accgcgctga tggcgttctt cggcgacccg
     9481 tcgaccactt tgtcggagta ggccagatac gccagcgtgt tgcgtttctc atcatagaaa
     9541 cgtacgacct gtaatgactt aaatatcaat gaggtgcgtt ttttgaaaac cacctctccc
     9601 tgcgccttgc cgttcttaat tttgtcgctc agttcaatag gcccgacctg ctgacaagag
     9661 atagcggcgt cagacgtatc ttccgccagc cccaatccgc cttttatgcc gcccgttttc
     9721 gcccggctaa catagcacgt cacgtttttg acatcaggat cgtcaaaagc ttccaccacg
     9781 attttatggt cagggccgaa cattttaaat accgtatcga ctgaaccaat ttgttccgcg
     9841 cgggcgctct gccccagcag caacaaaatt gagaaaagta ctaagctctt gtatttcata
     9901 ttgttaccat tcataaaagc tacgttgcgt aattattaga cattctaaaa taaaatggtt
     9961 atagatcaca ggattagaat aattacctgt cacgttgcct aaaaaaagca tttaagctca
    10021 aaaaaaacac tgaatgctaa aagaacaaaa aatgctatta tcctcttacc tgatatcggg
    10081 tgctcgttgt tgaaaggatg gggatatttt atggatcagg ctggcataat tcgcgacctg
    10141 ttaatctggc tggaaggtca tctggatcag ccgctgtcac ttgacaatgt ggcggcaaaa
    10201 gcaggctatt ccaagtggca cctacagaga atgtttaagg acgtgacggg ccacgctatt
    10261 ggcgcttata tccgcgcccg tcgtttatcg aaatcagcag tggcgctgcg tttaaccgcg
    10321 cgtccaattc tggatattgc tcttcagtac cgcttcgatt ctcagcaaac ctttacgcgc
    10381 gcctttaaga aacagttttc ccagacgcca gcgttgtatc gtcgctcccc ggaatggagc
    10441 gcctttggca ttcgcccgcc attacggctg ggcgagttta ccgtgccgga acatcagttc
    10501 gttacgctgg aagatacgcc gctgcttggc gtcacgcaga gctattcctg ctcgctggaa
    10561 cagatttccg acttccgcca cgaaatgcgc gtgcaattct ggcatgattt cctcggtcat
    10621 tcgccaacta ttccaccagt gctttatggg cttaatgaaa cgcgccccag catggagaaa
    10681 gacgatgagc aggaagtatt ctataccacc gcactgccgc aagagcaggc cgatggctat
    10741 gttcagtcgg cgcatcccgt gctgttgcag ggaggtgaat acgtcatgtt cacctatgaa
    10801 gggttaggaa ccggcgtgca ggattttatc ctgaccgttt acggcacctg tatgccaatg
    10861 ctgaatctga cccgtcgtaa agggcaggat atagagcgat actacccgtc agaagatacc
    10921 aaaaccggcg atcgccctat caacctgcgc tgcgaatttc tgatcccgat tcgccgttaa
    10981 cgctgtagct catccaatgc aggggtgtcc agatgcgaaa cgtcccctgc ggtttctacc
    11041 acccagccag acgccagcca ctgactttcc tggtaatcga tacgggaaat agagcagttg
    11101 cgcaaacgta accggcgttc cgcccaggcg ggtagtccca ggatagtact gaccagacag
    11161 cccaacgcga taccgtgact gaccaataaa ggtcggctgc cctgcggtag ctccagacag
    11221 gacgccagcg cggcatgaac gcgatcgctc aactcctgca tcgattcccc accaggaatg
    11281 cggccatcct gcgtgccgtt gaccagctga cgacgccagc cctcttcttc ttccgtcagc
    11341 gaatcgatct ggcgcttttc cagcacgccc atatccagct cgcgcaggcg gaagtcaaag
    11401 gtaatatcac acccgcacgc ctgggcgata atctccgccg tgcgttttgt gcggcctaaa
    11461 tcgctgctga tgatatgggt gatgccgagg ctgcgggcgc gttctcctac ctgcatggcc
    11521 tgctgctctc cttttgccgt caggggactg tccgattggc cctgaatacg tcgctcggcg
    11581 ttccactgcg tttcaccgtg gcgaacaagg tatacctgta acatgttttt ttccgttata
    11641 ctgcgataaa tttttaaaac tgagcttaat tatgcaccag gttatctctg cgaccaccaa
    11701 tcctgccaaa attcaggcaa ttctacaggc atttgaagag attttcggcg aaggatcgtg
    11761 ccatattaca cccgtcgccg tcgagagcgg cgtaccggag cagcccttcg gaagcgagga
    11821 aacgcgtgct ggcgcacgaa atcgcgtggg taatgcgcga cgcctgcatc cacaagctga
    11881 tttctggatt ggtcgcaaag agggcgccat tggcgtattt accgccggaa aattaacgcg
    11941 ctccagcgtt tactaccagg cggtgatcct ggcgctcagc ccgtttcata acgcggtgta
    12001 tcgataatta tttgcgctat gttgtaggcc tgataagcac agcgccatca ggcatttcgc
    12061 ggcgatgttg ccggatggcc gcttcgtctt atccggccta cgagcaaatc aggcgctttt
    12121 cagcagtatc tgctcaagcc aatgacgcag ttcaaccggc gcggatttca ggctgtttga
    12181 cccgcgtgtg atggtagcga tgcccgcccc cagctcggtt ttcaactcgc gctggctcat
    12241 ttcgccacgc agcaactcct caataatgcg cacgcgcgtt cccagcgctt cacgctcgtc
    12301 cggcgtaagc atcagttgta ataaaggcag atgcagatcc tctgcatatg cctgacggag
    12361 taactccaca aaacgaagcc actcctgatt acgttgttcg gcgatagccg atgaataagg
    12421 ggaatgctgg gtcatgttat accgccgttt gtactgttac acgagtacaa atgataacat
    12481 aacccgtctg cattaatacc gtcgctgcca ctcagagtcg ctcattaagg cctctttctg
    12541 tcccataaag tggcgatagt aagcgtcata ggccagaacg tttttcacgt agccgcgcgt
    12601 ttccgaaaag ggaatgcttt cgacaaacgc tacggcatcg atacgcccgg cgctattgcc
    12661 aagccaggtg cgcacgcgtc ccggcccggc gttatacgcc gccgatgcaa aaatgcggtt
    12721 attaccaaac tgctgataga catactgcaa atagctggtg ccaatgttga tgttggtctc
    12781 cggctccagc agttggccgg ggccgcggta gtccggaatc gaaaacattt tcaccgtatg
    12841 ggtggccgtt cccggcataa tctgcattaa accgctggcc cctaccggtg attttacttt
    12901 cgggttccag gcgctctcct ggcgggcaat cgccatggca tagctttgtg agatatcttt
    12961 tccgcgggta tagcgggtaa aaagatcgtt atacgccagc gggaaacgct cctccagatg
    13021 atcccacagt tttccggcga tcgtcgcctg tacgctcaga tcccaccagt gctggttaaa
    13081 cgcatagcgc gccagctgcg cctgttcaga tttactacgg ctttttacca gattcgccca
    13141 ttcgctgcgc gccgtgttat ccaggttcca gtacatcagc tcccgtacac gcgccatctc
    13201 cggcccctgc gtcaacgcgc tgtttacgtt ggcgggcgct ttatcgattt taagcgtgta
    13261 ctcttcgcct aaacgctgcg ccgcgaccat cggataaaaa ccgcgcttct gcattaaagc
    13321 atgaaggatc tctttcgctt cggcgtcacg accgcgctcc agcaataaat ccgcctgcca
    13381 gtaacgccac tcgtctttct ctttcgcctc catcggcagg cgggcaagcc aggtattgag
    13441 accgcgacga tcgcccatcc ccagcgccat acgcacgcgc cgctcgataa gcgacgtcga
    13501 ttgcgagcgc ataatcgcgt catcgcgcca tttcgcctgc gcatcggtca catcgttgcc
    13561 catcagtcgc caggcaacga tatcgcgcag cgcctgcgtt tgttcctcat taagtttctg
    13621 cgcctgtacc agcgagggga tcatcagacg cgcattttcc gcgtcctggc gggcgacgct
    13681 ggcaaacgcg acttccgcca tctggcgggt aaaatcggtg gcgccggtgg tgcgtgcaaa
    13741 ggtcaacacg ttattagggt cattagcgag ggtaatgatc gctgaggcga tcgtttgata
    13801 ttccgccggc atctgtccgg ccagcaccgt aaccagcccc gtatttccgg ctttcatcgc
    13861 cagccgaata cgttccagat acgccagcgg gtcttgcttg ccggaggccc gccagacgct
    13921 gaacagttta tcgcaggcat tcggctgact tttgccggtc agccaaaggt ctttcgcgcc
    13981 ctgccaggcc gcttccgttt gcccggtact ccatttcgcg tagtaatagt tacattgcgc
    14041 ttccgtggtg ccgggtttct ccgggctaaa cgccagcaag ccgcgccagt cttcacgacg
    14101 cgccagctca ttgacgaagc gcgattgcag cgtacgcgca ggcggaagcg taggattggc
    14161 gcgcacaaac tgcgtgacgg caatcgccgg ttggttcatc aaatcgtcgg tgatcttacg
    14221 gtattccaga tacgggtaga gcggataatc tttcagaccc ggcatcatct gctctaccac
    14281 atccatctgg cggttgtccc aggcctgctt aatctgcgca tagcggttac gctgctcttc
    14341 cagtgagtcg gcccgcgcga ggtgacaaaa ggtcaacagg catacgctgg cggcgacgag
    14401 acgccagaca aatggtttgg ctctatccac aagcacttcc tcaattgtta tccaatgcag
    14461 catcatgccg cgtaatgaat ttatgctaac cagtcatagc catttgcgcc acgttacgga
    14521 cactttttta cttttattgc gagtgcgatc tgctggctgg gcttaggcag ggaaaaaggc
    14581 tacacttcgc ctttgaaatc tattcaccat cacgataaac atagaggcga agtccaacgt
    14641 ggctcaattc gtttatacca tgcatcgtgt cggcaaagtg gttccgccga aacgtcatat
    14701 tctgaaaaac atctcgctga gcttcttccc tggcgccaaa atcggcgtgc tgggccttaa
    14761 cggcgccggt aagtctaccc tgctgcgcat catggcgggt ctcgataaag atatcgaggg
    14821 cgaagcgcgc ccgcagcccg gcattaagat tggctacctg ccgcaggaac ctcagctaaa
    14881 cccggaacac acggtacgcg agtcgattga agaggccgtt tcggaagtgg ttaacgccct
    14941 caaacgtctg gatgaagtgt acgcgctgta cgccgatccg gatgccgact tcgacaagct
    15001 ggccgcagag cagggccggc ttgaagagat tatccaggcg cacgacggtc ataacctgaa
    15061 cgtgcagctt gagcgtgctg ctgacgccct gcgtctgccg gactgggatg ccaaagtcga
    15121 aaaactgtcc ggcggcgagc gccgccgcgt ggcgctgtgc cgtctgttgc tggaaaagcc
    15181 ggacatgctg ctgctcgacg aacccaccaa ccacctggat gccgaatctg ttgcgtggct
    15241 ggaacgtttc ctgcacgact tcgaaggcac cgtcgtggcg attacccacg accgttactt
    15301 cctcgataac gtcgccggct ggattctgga gcttgaccgc ggcgaaggta ttccgtggga
    15361 aggcaactac tcctcctggc tggagcagaa agatcagcgt ctggcgcagg aagcgtctgc
    15421 cgaagcggcg cgccgtaaat ccattgagaa agagctggag tgggtgcgtc agggcgcgaa
    15481 aggccgtcag tcgaaaggta aggcgcgtct ggctcgcttt gaagaactga acagcgttga
    15541 gtatcagaaa cgtaacgaaa ccaacgaact gtttattcca ccaggaccgc gtctgggcga
    15601 caaagtcatt gaagtcagca acctgcgtaa atcctacggc gaccgcgtac tgatcgacga
    15661 cctgagcttc tcggtaccga aaggcgctat cgtcgggatc atcgggccaa acggcgtggg
    15721 taaatcgacc ctgttccgca tgatgtccgg tcaggagcag cctgatagcg gcaccattac
    15781 gctgggtgaa accgtcaagc tggcctcggt cgatcagttc cgcgacgcga tggacaacag
    15841 caaaaccgtc tgggaagagg tgtccggcgg gctggatatc atgaagatcg gcaacaccga
    15901 aatgccaagc cgcgcctatg taggccgctt taacttcaaa ggcgtcgatc agggcaaacg
    15961 cgttggcgaa ttgtccggcg gtgagcgtgg tcgtttgcat ctggcgaagc tgctgcaggt
    16021 gggcggcaac gtcctgctgc tcgacgaacc gacgaacgac ctggatatcg aaaccctgcg
    16081 cgcgctggaa aacgccctgc tggagttccc tggctgcgcg atggttatct cgcacgaccg
    16141 ttggttcctt gaccgtatcg ccacccacat tctggattat caggatgaag gtaaggtgga
    16201 attcttcgaa ggtaacttta ccgaatacga agagtacaag aaacgcactc tgggcgccga
    16261 ggcgctggag ccgaagcgta tcaagtacaa gcgtattgcc aaataaacgt ctgaatgccg
    16321 ggtggcgctt gcgcttaccc ggcctacaaa cccagcgatt ccaatacgtt gtgaaactgt
    16381 aggcctgata agacgcggta agcgtcgcat caggcattgg ttcttatccc tgctcgccca
    16441 tcatctcttt caccagttcc acacagcgca aaaagcggcc atcgtaatca gcctctttaa
    16501 cgtgaacgaa ctcaatgttg ttttctttca gcatctcgac cagcaggttc tggaacgctt
    16561 tgcgatccac tgaactgccc aggcttcgca gtccgtcagc tatccacggc gtattattct
    16621 ccagcaaaat caccaggtcg aagcgatact cgtcgatcag cgcctggaca aacggatgct
    16681 cgcgcccttc gtattttttg caaaatgcct gggtggtgac gaaatcggta tcgataaacg
    16741 ctactttatt cgcatatttc actgcaaaat caatatattg cgcatgaccc agcgcaattt
    16801 tatcgtagtc ggaatactgt aacgccatct catcgccgcc cagatgcgaa aagacatagt
    16861 cgcggccata ttcccaggcg ctggtggtat taaaaatatt ggcgagctta ttgaccagcg
    16921 tagacttgcc gcttgattcc ccgcccagaa tcgcgacggt acgcacgaaa aacggcttca
    16981 cttcggtagg aatatattcc cagtaacgaa acggattttc gcggatttgc gccccgctga
    17041 tattcataaa cgtgcgttca ggatcgacca gcaccgtctc aatccctaaa tgctccaggt
    17101 actgcggcgc atcagcctct tcggaagtgt agatccagct cggctgtatt cccttctctg
    17161 ccataaacgc tttaatgccg ttgctccaga cgtcccagcc atgcggataa ggttccatcc
    17221 cctcttcatt aaaggcgtgg atgcgaatat ttttttggta tttgaaggtt tgcagcaacc
    17281 agcgcaggcg atccgacacg gtgggctgct gcgacatggc gctatcttca aacagcccgc
    17341 ggtcgcgcgt atcgtcatat cccataatga tgtgcaactc atccacctgg ctacaggcac
    17401 gctggatcaa gtagatgtgc ccggtatgca atggataaaa tttaccgaac accacgccaa
    17461 tgtttttctg tcggcgggga aactccagcc cgagaaaacg gtgtagcgcc tccagttttt
    17521 gcgcgctggg gcttttgatt ttggcgttaa gtaactgact cagatacccc ttggtcatac
    17581 cgctggcgtc agccacctgt tgcagagtgc aaccttgctg cttaatcgcg gttttgagat
    17641 agtcgaacga tgacacaaga gcctcctgct ggaaaaatcg cataacactg cctgacggcg
    17701 cttcgcttat caggcctaca acatcaatcc gtatcaatcc gtaggccgga taagacgcat
    17761 tgcgtcgcca tccggcaaat tatacaacat cactacatac agagaattat aagtcgtcaa
    17821 acacgcttaa cgcatctgcg agctttttaa caccgaacac ctgcattcct tccggcggct
    17881 ttttcggtac gttggcggca ggcacaatcg cccgacgaaa accgtgtttc gccgcctcgg
    17941 aaatacgctc ctgcccgctc ggcaccggac gaatctcgcc tgccagcccc acttcgccaa
    18001 acaccaccag atcctgcggc aacggcctgt cacgcaggct ggagaccatc gccagcagta
    18061 aagccagatc cgcgctggtt tcggtgactt tcacgccgcc gaccacgttg acgaagacgt
    18121 cctgatccga catttgcaga ccgccgtgtc ggtgcagcac cgccagcagg atagccagac
    18181 ggttttgttc cagaccgacc gccacgcgtc tggggttcgc catcatcgag tgatcgacca
    18241 gtgcctgaat ctccaccagc aacggtcgcg taccttccca gacgaccatc actgagctgc
    18301 cggaagtgac ctcatcgccg cggcttaaaa agatggcgga cggattgctc acttcgcgca
    18361 acccctgttc ggtcatagcg aagacgccca gctcattgac tgcgccaaag cggtttttgt
    18421 ggctgcgcag cgtgcggaaa cgagaatcgg cgtcgccgtc gagcaatact gagcaatcaa
    18481 tacagtgttc cagcactttc ggccccgcca gcgacccgtc tttggtgacg tggccgacca
    18541 tcacgatcgc cacgccgcgc gttttagcga agcgcgtcag gtaggctgcc gtttcgcgga
    18601 cctgggcgac gctgcccggc gacgactgga tgtccgccat atgcatcacc tgtatggagt
    18661 cgatcaccat tagcttcggc tgttcttctt ccgctatcag gcagatctgc tcgatgctgg
    18721 tttcggagag catattcaga ttagcggtcg gcaggccgag acggtgcgcg cgcatcgcca
    18781 cctgctgtag cgactcttcg ccggtgacgt acagcgtttt catctgctcg gcaagtttgc
    18841 acagcgtttg cagcagcaac gttgatttgc ccgcgccggg gttaccgcca atcaaaatgg
    18901 cgctgccggg taccaccccg ccgcccagca cgcggtcaaa ctctttaaaa ccggtagaaa
    18961 agcgcggcag ttcctcaaga ctgatgtcag acagtttctg cacttttgat acgcccgcac
    19021 tgccggcgta tccgctcaga cgttcgttac gcgccaccgt cggcgacgcg gcaaggcgca
    19081 cctcagtaat ggtgttccag gcctggcagg cgctgcactg cccctgccag cgtgggtaat
    19141 cggcaccaca ttcattacaa acaaaggcgc gtttgggagc ttttgccacg ttttacctct
    19201 ttcgttaacg ctgttgccgg atggcgctgg cgcttatccg gcctacggtc gccttgccat
    19261 tgggcagatt aatcatttct ggttcatgct gccggagaga atgcaaaaca cgcccatcag
    19321 gtcagcgtgg cggatcgtaa tctccgtctt ttcgtttact tttggcttgg catggaaggc
    19381 aatacctaac cctgccgctt tgatcattgg cagatcgtta gcgccgtcgc caatcgccac
    19441 cgtctgcgcc agcgggatgt catgctcttg cgccagacga agcaaggtat tggctttata
    19501 ctcagcatcc acaatatcgc cgataacgtg accggtaaat ttaccgtcca tgatctccag
    19561 ctcattggcg accgccgccg tcaggcgtag ctggtcacgc agatagtcgg cgaagaaagt
    19621 gaagccgccg gaggcgatag cgattttcca gccgagcgct tccagtttta gcaccaactg
    19681 cgttaatcct ggcattagcg gcagattccc gcgcacctgg cgcaaaatat cggcatccgc
    19741 gcctttcagc gtcgccacgc ggctgcgcag gctggcggta aaatcaagct cgccgcgcat
    19801 cgcgcgctcc gtcacttcag ccaccttctc accggtaccg gccagcttag cgatttcatc
    19861 gatacactca atctggatcg ccgtggaatc catatccatg accagcagcc ccggcgtgcg
    19921 caaatgcgga attttaccca gcggcgcgac atccagctgc gcctcatgcg ccagccgcgt
    19981 cgcacgcggc gtcagcgacc ccgccagacg aatgacctga taatcctcca cgcaccaggc
    20041 ggcgacaatc accattgccg cgcccagttt ggtctgatat tgagttaaac gctgcttatc
    20101 cagcccgcgc ccatacagca gccaaccgct gcggcctgca tggtaatcca gaggcatcac
    20161 ctcgtcgccg cttaaagaaa gaggcaaacc aggccataaa gagacatctt caggcagatc
    20221 gcaccaggta atgttaggca ttaaagctcc tgtaaatcgt tcaggccggt aaccgccccg
    20281 cggaaaataa cgcatgaggc taccttgtaa ccatcgcttc tggcaacatt aagcctcaaa
    20341 ttttcagcag gtggaatatg gctcgcgcaa aactgaaatt tcggctgcat cgtgcagtca
    20401 ttgtattgtt ctgtctcaca ctgctcgtcg cgctcatgca gggcgcgtcc tggtttagtc
    20461 aaaaccacca gcgacagcgc aatccacagc tggaagagct ggcccgcacg ctggcgcgcc
    20521 aggtgacgct caacatcgcc ccgctgatgc gcagcgaaac accggatgaa aatcgcatca
    20581 acgccgtgct gcgtcagctc acgcaagaga gccatattct ggatgccggc gtctatgatg
    20641 aacagggcga tcttattact cgcgctggcg aaagcgtcaa cgtgcgcgac aggctggcgc
    20701 tggatggcaa aaaagcgggc agctatttta accaacaaat tgtcgagcct atccagggga
    20761 aaaacggccc attgggctac ctgcgtctga cgctggatac ccacactctg gccaccgaag
    20821 caaaacaggt cgataacacc accaacattc tacgcctgat gctgctactc tcgctggcga
    20881 taggcgtggt gctgacgcgc accttgctac aaggtaaacg cacccgctgg cagcagtcac
    20941 ccttcctgtt aacggccagc aagcctgttc cggaagagga agagcgtgag gaaaaagagt
    21001 aaaatgacgg cttaataaag gtaaggaaaa ccaccatgac aacattacgc ctgcttattt
    21061 ctgactctta cgatccctgg tttaacctgg cggtcgagga gtgcattttc cgccagatgc
    21121 ccgccaccca gcgcgtgctg ttcctgtggc gcaacgcgga cacggtggtc attggacgcg
    21181 cgcaaaaccc gtggaaagag tgtaatacgc ggcgtatgga agaagataac gtccgtctgg
    21241 cccgccgtag cagtggcggc ggcgcggtat tccatgacct cggtaatacc tgctttacct
    21301 ttatggccgg taaaccggaa tacgataaaa ccatctccac ccatattgtg ctcgcggcgc
    21361 tgaattcgct gggcgtcatg gccgatgctt caggacgcaa cgatctggtc gtaaaaacgc
    21421 cggacggcga tcgcaaagtc tccggttcag cctatcgcga aaccaaagat cgcggcttcc
    21481 atcacggtac gctgctgctg aacgccgacc tcagccgtct ggcaaactat ctgaatccgg
    21541 ataaaaagaa acttgcggcg aaaggaatca cctccgttcg ctcccgcgta gccaatctta
    21601 ccgagttatt accgggtatc acccatgaac aggtctgcca ggcggtcacg gaagcctttt
    21661 tcgcccatta cggcgaacgc atcgacgcgg aagtgatttc accggataaa acgccggatc
    21721 tgccgaattt taccgaaacc tttgcgcgcc agagcagttg ggagtggaat ttcggccagg
    21781 caccggcgtt cagccatctg ctggacgagc gtttcacctg gggcggcgtc gagctgcatt
    21841 ttgacgtaga gaaaggtgtg attactcgcg cacaggcgtt taccgatagc ctgaacccgg
    21901 caccgctgga agcgctggcg gggcggctgc aaggctgcca gtatcgggcg gataaactac
    21961 aggaaacgtg cgaagcgctg atagcgacgt ttccggaaca ggagagtgag ttgcgggaac
    22021 tggcgaattg ggtcgcaggg gccgtgcgtt aaagaattgc cggatggcgg ctacgcctta
    22081 tccggcctac aaatgagtgc tttctgtagg ccggataagc aacgcgccat ccggcattac
    22141 cgctattcac cagcgtcaag atccctcacc tcccccgccc aatcaaccgg gtaaacgcca
    22201 ttgcgaacat cacgatgaaa ggtcgaaaac ggccaatcct gcacccgcct tacccaaccg
    22261 tgcttcacgg ggttgaagta gaggtaatcg acatgtcggc gaaaatcctt ttcgtcgcga
    22321 atcgtgtgct cccagaatcg tggctgccac acgtcatggc gcattatcga tttggtaaat
    22381 aactttttaa gctcccgcca gcgagatgaa aagtcacaat cgttctcagg aagcgtccag
    22441 atgcaatgca gatgctcagg caacacgaca aaagcatcaa tttgaaaagg cttcgtattt
    22501 ttcactcggc gaatcgcaga gcgtaattcc gcaatctggc ggacaagtaa atcacttttc
    22561 cggtttttca gattaaccgt gaaaaaccag gttccaccgt taatgtaata acgacgatag
    22621 ttcgacattt tgttcattcc ttaaacaaaa tccaaacgta acgggttaat agcaaaaggc
    22681 aatgcggaga gggtaattcg ggaatgaggc tcgcagtata aacagcagat tgccggatgg
    22741 cggctacgcc ttatccagcc tacaaatcga tcctgtaaca atcgcaggcc gttgtaggcc
    22801 cggtaagcga agcgccaccg ggcacagcac aatcttactc tttatcgccc agcagtacgg
    22861 attccagcgc gattttgatc atgtcgttga aggtcgtctg acgttcagcg gcagtggtct
    22921 gctcgtgggt acggatatgg tcagacacgg tgcagatggt cagcgctttc gcgccaaatt
    22981 cagccgcaac gccgtagata cccgccgctt ccatctctac gcccagtacg ccgtattttt
    23041 ccatcacgtc gaacatttcg ccgtccggag aatagaacag atccgcggag aacaggttgc
    23101 ccacgcgcgc gtctacgccc agcgcttttg ccgcgtcaac cgcgttacgt accatgtcga
    23161 agtcagcgat agccgcaaag tcatgatctt tgaaacggat acggttcact ttggagtcgg
    23221 tgcaggcccc cataccgatc accacgtcac gcagtttgac gtccatgcgc acagcgccgc
    23281 aggagccgac gcgaatgatt ttcttcacgc cgaaatcggt gatcagctct ttggtgtaga
    23341 tggagcagga cgggataccc ataccgtggc ccatcacgga gatcttacgg cctttgtaag
    23401 tcccggtgaa acctaacatg ccgcgaacgt tgttcacttc gcggacatct tcgaggaaag
    23461 tctcagcaat gtgcttcgca cgcagcgggt cgcccggcat caatacgacg tcagcgaaat
    23521 cacccatttc tgcattaata tgtggagttg ccatcttcag ttccctttaa atttgttgtt
    23581 attgcctgat ggcggctacg ccttatcagg cctacaaaac gtgtgtaaaa acagtgaaat
    23641 accctaagga tttcgcgttg taggaaggcg acgaattcgt gaatccccgg gagcatagat
    23701 taactatgtg accggggtga gcgaatgaag tcaacgcatc tacagcgcga aagacaacgg
    23761 gtatcacagc atgtttttac cgtagtccat cggcgatgta ccaaagtagg tcgccagcgt
    23821 ctggccgata tccgcaaagg tttcacggtg acctaaagag cccggtttga ctttcggacc
    23881 gtagatcagc accggaatgt gctcacgggt atggtcagta ccggtccagc tcgggtcaca
    23941 gccgtggtca gcggtcagga tcagaatgtc atcttcaccc accagctcca tcagctccgg
    24001 cagacggcgg tcaaacagct ccagacctgc ggcgtagccc gcgatgtcgc gacggtggcc
    24061 ccaggaagag tcgaagtcaa cgaagttagt gaaaacgatg gttttatcgc ccgcttcttt
    24121 catctctttg agggtcgcgt cgaacagcgc gtccagaccg gtcgctttca ctttcttagt
    24181 gatgccgcag ttggcgtaga tgtcggcaat cttaccgacg gacaccacgt ggccctgttt
    24241 ttcatcgacc agtttctgca gcacggtcgg cgctggcggt tctacggcca ggtcgtgacg
    24301 gttgccggta cgctggaagt taccggcctt gtcgccgata aacggacgcg cgatcacgcg
    24361 gccaatgttg tagccgcctt cggtcagctc ttcacgggcg atttcgcaca gctcgtagag
    24421 tttatccagg ccaaaggtct cttcgtggca ggcaatctgg aacacggagt cagcggaggt
    24481 gtaaaaaatc ggcttgccgg ttttcatgtg ctcttcgccg agctggtcca gaatgaccgt
    24541 accggaagag tggcagttac cgagatagcc cggcaggttg gcgcgtttta ccagcttatc
    24601 cagcagttcc tgcgggaagc tgttttcgtg gtcgctgaaa tagccccagt cgaacagcac
    24661 cggcacgccg gcgatttccc agtggccgga cggcgtatct ttgccggagg acagttcgtg
    24721 cgcccatgcg tatgcgccaa taacgtccgc gttgccgtcc atgccggcgg caattttacc
    24781 ggtagagcct tcatgcgctt tcaccagccc cagacgagtc aggttaggca gattcaacgg
    24841 gcccttacgg ccattgtcag cttcgccttt ggcgcaagct tctgcgatgt ggcccagagt
    24901 gtcggaacct acgtcgccaa aacgatccgc gtcttcagta gcgccgatgc cgaatgagtc
    24961 cagcaccata ataaatgcac gtttcatatc ttctccgtac ttagtgcttc aaaaataatt
    25021 gatcagatca gtatacaact attcagtaat tcgacgatag accgaaggtg tgcttgctgg
    25081 cgctttatcg tcaaggataa ttgccgcttt gacggccttc gccgcttcct gccaactggc
    25141 ttcgtctttg gcatgaatca ccgccagcgg gcgctgcccg tcgatgctgt cgcccagacg
    25201 ggccatgtcg gtaaagccaa cgctgtaatc aatggtatca gacgcctgac gacggccgcc
    25261 gcccatcgag acgaccgcca tccccagcgc acgcgtatcc attgcgctga taaacccttc
    25321 ggtatcagca tataccgctt tgctcaacat ggcggtcggc aggtatttat cgtagttctc
    25381 aacgaaatcg ctcggccctt tctgcgcggc caccatacga ccaaagactt ctgccgcttt
    25441 accgttatcc agaaccgcct gtaatttcgc acgcgcttcg gcgtcgtctt tcgccagctg
    25501 gccggagatc agcatctcca cgcatagcgc catggtaacg tcaaacaagc gcggattgcg
    25561 gtattctccg gtcaggaact gcacggcttc acgcacttcc accgcgttac cggcgctcga
    25621 agccagcacc tggttcatat cggttaacaa agccgtagtg cgaactcccg cgccgtttgc
    25681 cacgccaaca atcgcttcag caagggcttc agaaagttca taggttggca taaacgcgcc
    25741 actgccgact ttgacgtcca ttaccagcgc atccagccct tcggccagtt tcttggcgag
    25801 gatggaacca gtgatcagcg gaatagagtc caccgtcgcg gtaatatcgc gggtggcgta
    25861 aaaacgtttg tccgccggtg caagcgagct ggtttgccca ataatcgcca cacccacgtc
    25921 ttgaataatt tcgcggaaac ggttgtcgtc cgggaagatg tcgaagcccg ggatcgcttc
    25981 cagtttgtcg agcgtaccgc cggtatgtcc gagaccgcga ccggagatca tcggcacata
    26041 accgccgcag gccgctacca ttggccccag catcagagac gtcacgtccc ctacgccgcc
    26101 ggtcgaatgc ttatcgacaa tcgggccatt gagattcagg cttttccagt caaggacagt
    26161 accggaatcc cgcatcgcca tggtcagcga aacacgctcc ggcatggtca tatcgtggaa
    26221 gaagatggtc atcgccaggg cggcaatctg cccttcagag atagtattgt cacgaatacc
    26281 attgataaag aaacgaattt cttcgtcact caacgcatga ccatcacgct ttttacgaat
    26341 aatttcttgt gcgagaaaca cggtaccctc ctgagggaaa agagtagaag gcttacatcg
    26401 ccggatggcg gctaacgcct tatccggcct acaggcctgg atttgtaggc cggaaagcgc
    26461 agcgccatcc ggcaaatcag agcttagtag ctgctggcgc tcttaccgtc gccgtgaccc
    26521 agcgctttca gcaggcttgc cagcaggctg gatgcgccaa agcggtagtg acgagaatct
    26581 gcccagttag cgccaaacag ttcgtctgcg atcgcgagga atttctgcgc gtcttccgcc
    26641 gtacgtacgc cgcccgccgg tttgaagcca acggttttgg aaacgcccat gtcgcggatc
    26701 acttccatca tgatgcgcgc gctttccggc gtagcgttta ccggcacttt accggtagag
    26761 gttttgatga aatccgcacc ggctttaatg gagatttcag aggctttacg aatcagcgcc
    26821 tcttctttca gctcgccggt ttcgataatc actttcagca atacgttcgc tgcggcacaa
    26881 gcgtctttac aggcttttac caggtcaaaa cccacctgct cgttaccggc gatcaacgcg
    26941 cggtacggga ataccacgtc cacttcgtca gcgccgtagg cgatcgccgc acgggtttcc
    27001 gccagcgcaa tatcgatgtc atcattgcca tgcgggaagt tagtcaccgt tgcaatgcgg
    27061 atgtccgggg taccttgttc tttcagagtt ttacgcgcaa tcgggataaa acgcgggtaa
    27121 atacaaatcg ccgccgtatt cccgaccggg gtttttgcct gatgacacaa cgcgatcact
    27181 ttttcattgg tgtcgtcatc gttcagagtg gtcagatcca tcagtttgag cgcacgcagg
    27241 ctgcttgctt ttaaatcagt catgacattc tccaacggca ttgccgtata aaatttcacc
    27301 ttgcgagtct gttaatattc taacattcac tcgcgattac acttcgatat acatcacagt
    27361 taatgaaaac tacgtacaaa tttgcattac tgtaatgaga tctgaatcaa attatcccgc
    27421 cgtcaccgcc tgttcttcga gcgttaagcg catcaggatc aaagtcggtt tgccgccatt
    27481 ttctacaata gcgcatcgtc ccggcataaa gaggaaacga agatgcctgc ctcatgcgaa
    27541 actgcgctcc agcagcgttg ccagcaaatt gtgaccagcc cggtgctcac gcctgaacaa
    27601 aaacgccatt ttctggcgct ggaagctgaa aacgccctgc cttatcccac cctgccggaa
    27661 gatgcccgcc aggcgctgga tgaaggcgtc atttgcgata tgtttgaggg gcacgccccc
    27721 ttcaaaccgc gctacgtgtt gcccgattac gcccgatttc tggctaacgg ttcacagtgg
    27781 ctggaactgg aaggcgcgaa agatctggat gatgcgttat ccctactcac cattctgtat
    27841 catcacgttc cttccgtgac gtccatgccg gtttatctcg gccagcttga tgcgttgctg
    27901 caaccgtatg ttagaattct aacacaagat gcgatcgata ttcgaataaa acgtttctgg
    27961 cgttatctcg acagaacgct gccagacgcc tttatgcatg ccaatattgg ccctgccgat
    28021 acgcctgtca cacgagcgat tttgcgcgcc gatgccgagt taaagcaggt ggcgcctaac
    28081 ctgacgttta tctacgatgc ggaaattacg ccggacgatc tgctgctgga ggtcgccaaa
    28141 aacatttgcg aatgcagtaa gccacacatt tccaacggcc ctgtaaatga taaaattttc
    28201 acaaaaggcc attatggcat cgtcagttgt tataactcgc taccgcttgc cggcggtggc
    28261 agtacgctgg tacgtctcaa cctgaaagcc gtggcagaac gcagtacgtc tgtcgatgac
    28321 ttcttttcac gcacgctacc gcactactgc cgacagcaga tcgccatcat taattcacga
    28381 tgtgaattcc tctatgaaaa gtcacatttc tttgagaata gcttccttgt acaggaaggt
    28441 ttgatcgatc ccgaacgttt tgcgccgatg ttcggtatgt acgggctggc ggaagccgtg
    28501 aacctgctgt gcgaaaacgc cggcctgacc gcccgttacg gcaagaatga aacggcgaac
    28561 gagctgggct accgtattag cgcccaactg gcggatttcg tcgaaaatac gccagtgaag
    28621 tatggcagga agcaacgggc gctgctccat gcccagtctg gcatcagttc cgatatcggc
    28681 actacgccgg gcgcgcgtct gccgtatggc gatgaaccgg accctatcac ccatttgcaa
    28741 accgtcgcgc cgcaccatgc cttttatcat gccgggatca gcgacattct gacgctggac
    28801 gaaaccatca agcgcaatcc gcaggcgctg gttcagcttt gtcttggcgc gttcaaagcc
    28861 gggatgcggg aatttaccgc caatgtcagc ggcaacgatc tggtgcgcgt caccggttat
    28921 atggtgcgcc tgtcggatct ggcgaaattt cgcgccgaag gctcgcgcac gaataccacc
    28981 tggctgggag aagaagccgc acgtaatacc cgcatcctgg aacgacagcc acgcgtagtc
    29041 agccatgaac aacagatgcg ctttagtcag taagatcatt gcgttttcct gcgtcgatgg
    29101 gccaggcagc cgcctggcat tattcttaca gggctgcaat ttgcgctgca agaattgcca
    29161 taacccgtgg acgatgggac gctgtaacga ctgcggggaa tgcgtatcgc agtgtccgca
    29221 ccacgccctc agcattgatg gcgggaaagt ggtatggcgg tcggacgtct gcgagcagtg
    29281 cgatacctgc ctgaaaatgt gcccacagca ggcaacgcca atggcgcaga ctatgagcat
    29341 tgacgatgtg ctgcgtcata ttcgtaaagc atcgctgttt attgaaggta ttaccgtcag
    29401 cggcggagag gcgaccacgc aattaccgtt tattgtggcg ctatttacgg cgctcaaagc
    29461 cgatccgcag ttacaacggc tgacctgtct ggtggacagt aatggtcagt taagcgagac
    29521 cggctggcaa aaactactgc cggtttgcga cggcgtaatg ctcgatctga aagcctggaa
    29581 gagcgagtgt catcaccgtc tgaccggacg tgataacacg catattaagc acagtatccg
    29641 ctttcttgct gcgcggggaa aactggcgga gctgcggttg ctggttatcc cgggtcaggt
    29701 ggactatgcg gcgcatatcg attcactggc ggcgtttatt acttcgctgg gcgaggttcc
    29761 ggtgcgcctg aatgcctttc atgcgcatgg cgtctatggc gaagcgaaag cctggccagg
    29821 cgcgacgccg caagaggtgg aacggctggc tgacggattg cgcgcgcgtg gggtggcgaa
    29881 gctgattttg ccggcgctat atttgtaagc gtcgcctgcc ggacggcggc tgcgatgcca
    29941 tcagagccga aacaaggtaa cggtattgcg atacagcgta tcggctatca cctctgcggg
    30001 ctccggacgt aattcgcaga gcgcatcaaa tacgcgcgcc gcctgctccg ggcggttcgg
    30061 ctgcccctga aaccccttta gcggcatatc cggcgcatcg gtctccagca acagcgcgtc
    30121 cagcggcaac cgcgccataa catcacgggt tttactggcg cgcgggtagg tgatggtgcc
    30181 gccgacgccg attttatagc ccagttgcac aaaacgttcg gcctgttgca gactgccgga
    30241 aaaaccatgc accacaccgg tttgcggcaa actctggcgc tttaagcgca tcgccagttt
    30301 gtcatgcgtg cgccgcgagt gcaggatcac cggcagatcg tagcgttttg ccagttgcag
    30361 ttgcgcgtct aaaaatcgct cttgcctggc gaactgcgga tcgtcgcgat aaagatcgag
    30421 accgatctcg cctaccgcca cgacgttctg ttgttgcgcc agcgcttgtt gcagcttatc
    30481 aggatcgtca tcggcatgac gctcaatcac aatggggtgc aatcccagcg cagcataaag
    30541 cgacgggaaa cgcgccgcca gcgccagcac gcggggaaag tgagccgcct cggtcgccgg
    30601 cacgatgatt ttttcaacgc ccgcctcaca ggcacgctga atactggcgc gctcatcgcc
    30661 cgtaaagggc gggaaatcaa aatggcaatg cgtatcgata aagcgccagc tcacgccaga
    30721 tcctcgtcgg taaatgtggt gtcgtttgcc tgcggcgcgc taatgacctc cgccacatgc
    30781 gtatcattgg ccaccggtgc cggaggcacg accaccgttt ccggcacggc aatccgcgac
    30841 gaatggcgca agagaggcgg cgttgcggcg agcaatttac caacggtggc aaggaaataa
    30901 cgcccgcata attgcccggt tttgtaatcc tcacgcagcg ccgggatacg gctgcccagc
    30961 gccatgctgt gcagcggttt cggcggataa atttcaatga tccgcagctt acccggcggc
    31021 ttttcaataa attgttggat cgcgctgtag gacgtttcat gatgctgcac caggttgacc
    31081 aacggctgta gactgctctc tcccagccag cgctccatac gcttaaacca ctgcggcgtg
    31141 taatacattt gcgagggtac ggtgcggatc accacaatgg ttttcgcccc ccgctttgcc
    31201 gcctcctgaa ccggaatggc gtcgctaatg ccaccgtcca gatagttgat gccctctaac
    31261 gtaacgccgg tacggtagaa acccggtatg gcgctggagg cgcgaatgat atcaagccag
    31321 ttttgttttg tcggcgagaa atagcccggc gtgtaatcat ccccccggca ggcgcacata
    31381 taaaaggatt ttccgctgtc gaacaggcgc gctgaggtat ccatctgcag cggcatccgg
    31441 gcggcggtgg actccaccag ccagtcgagg tcgataaggt ttcctccgcg tacaaatcgc
    31501 agcggatcaa aaaattcgcg cctggtggta tagcgcataa tgactttacg cccgtagccg
    31561 ggctggttgc agagatacgc cgagagattt tgcgcaccgg ctgatgtgcc gaagtagaga
    31621 tggaaaggat taaactgcgc acgcataaac tcatccagca cgcctgcggt aaagatgccc
    31681 cgctgccccc cgccctcaca gaccagcgcc atacggcctg accggaacgg tgttaatgat
    31741 aacggcgcaa tattgccgag cgtaaccggt attcgctggc ccacctctgc cttcctgttt
    31801 ttcatttttt tccaggctga caaggtaatg caaaacgtta acggctaaaa ccgtaaaagc
    31861 cagtccgctg gactggcttg atagcaatat atctttacag ctgcctgcta gggtcgttta
    31921 cggcccatga acaggctgac caggaagagc acgatcccga cgacgaagac gattttcgcc
    31981 gcgccggcag ccgtaccagc cagtccacca aaacccaatg cggcggcaat taacgcgata
    32041 accagaaata taatgcccca acgaaacata agcctctcct ttaccatagt taatgtcgac
    32101 cgctaaatat gagcgctcag gctactcatt cgcgatattt ttagtgtggt gcacattacg
    32161 cctcccgaca aacgtcggga ggacgaatta cgacgaatta ctgaactttc agatcgtttt
    32221 taacactttt tacgccatca acggctttcg cgatgctttc agcgcggtcg ctttgttcct
    32281 gagtttcaac agtaccggag agctgtacga cgccatcggt cgtttccact tttactttac
    32341 gggaagggac gagatcgtcc gccagcaact tggctttgac ttcactggtc gtggccgtat
    32401 cgccggcata acctttcacg gaaccttctt tattgtcgcg aacgtgaagt ttgtcgctaa
    32461 cggaggtcac gccttctacg cctttcgcca ctttcacggc ggcttcagcc tgcgcctggc
    32521 tttctacaaa gccgctcagg gtgacgactt tctgattggt ttcgacagaa atatcggtgc
    32581 ttttaatatt gtcatggtct accagcgcag ctttgacttt cgcagtgata gcgctgtcat
    32641 ccatgaagtt accgacttta ttcatagagc tatcgacttt ttgccctgcg gtttcggttc
    32701 cgctttgcgc cttgtccgtt gttgcgtttt ctgcaaaggc agaacctgtc gcaacagcag
    32761 aggtcaacat tacggccagc agagttttag aaatcttcag tcttgtcata gtcatcgatt
    32821 ttgtcctgta tagtttgctc gtaatttgag ctcaggcaac acgaggttgc attgctgaat
    32881 gcggtgaaac tcaccggttt ctgaagtcaa tgactggcat cacattcgtg aatttgtaac
    32941 gacgcgtcgc ctgccaccct tccgtttcag ttattaatat cgtgactgaa acaaatctca
    33001 gctttaagct ctcatattca cgcattgaac aggcattaaa gccgacattt atgtcatcac
    33061 tttgttaaat atagatcaca attttaaaat cgcttgtcgg tgcgtataaa aaacaggcag
    33121 atcggagaaa aaacgcggga tttaagaaca ttccgtaagc ggttaaaaag gcagggaaag
    33181 tacgaaggcg cggcggatgc cgcgcccgga aagggatcag tgttcgcgcg ttttacggaa
    33241 ctgaacgtca gggtaacgtt cctgggtcag gttcaggtta accatcgtgg gggcgatata
    33301 ggtaaggttg tcgccgccat ccagcgccag ctgcgtttca ttcttacgct taaactcttc
    33361 gaatttcttc gcatcggcgc tttccaccca gcgcgccgtc gccacgttga cggattcata
    33421 aatcgcctca acgttgtatt cgcttttcag gcgcgcgaca acaacgtcaa actgcaaaac
    33481 gcccacggcg ccgacaatca gatcgttgtt ggagatggga cggaatacct gcaccgcccc
    33541 ctcttcagaa agctgcacca gccctttcag tagctgcttc tgcttgagcg gatctttcag
    33601 gcgaatacga cggaacagtt ccggcgcaaa gttcgggata ccggtaaact tcatcatctc
    33661 gccctgggtg aaggtatcgc cgatctgaat ggtgccgtgg ttatgcagac ccaaaatatc
    33721 gcccgggtac gcttcttcaa cgtgcgaacg gtcgcccgcc ataaaagtta acgcgtcgga
    33781 aatcaccaca tctttgccgg tacggacctg gcgtagcttc atgcccttct catacttacc
    33841 ggaaaccacg cgcataaacg ccacgcggtc gcggtgtttc gggtccatat tggcctgaat
    33901 tttaaagaca aaaccggtga acctctcttc tgaggcttcc actgtgcggg tatcggtttg
    33961 acgcggcatc ggcgcgggcg cccacgccac taaaccatcc agcatatggt caacgccaaa
    34021 gttacccagc gcggtaccga aaaataccgg ggtaatttcc cctgccagga acagctcttc
    34081 atcaaactcg ttagatgcgc cctgcaccag ttccagctcg tcgcgcagtt gctgcgccag
    34141 gtcttcaccg acggcggcgt ccagatccgg gttattcagc cctttaacga tgcgcacttc
    34201 ctgaatggtg tggcccttac cggtctgata cagataagtt tcatctttat aaaggtgata
    34261 aacgccctta aacagcttgc cgcagccaat cggccaggtg atcggcgcac agccgatttt
    34321 cagctcattt tccacttcat ccagcagctc catcgggtcg cggatgtcac ggtcgagttt
    34381 gttcataaag gtcaggatcg gcgtatcacg cagacgggta acttccatca gcttacgagt
    34441 cctgtcttca acaccttttg cggcgtcgat caccatcaga cagcagtcca ccgccgtcag
    34501 ggtacggtag gtatcttcgg agaagtcttc gtgccccggg gtgtccagca ggttcaccag
    34561 acaatcgtga tacgggaact gcatcaccga ggtggtgata gagataccac gctgtttttc
    34621 catctccatc cagtcagatt ttgcatgttg gctggagcca cggcctttta ccgtaccggc
    34681 ggtctgaatc gcctgtccga acagcaacac tttttcggta atggtggttt taccggcgtc
    34741 cgggtgagaa atgatggcaa aagtgcggcg tttggccacc tcttgcaaat aaggagacaa
    34801 cgtcatagtc aaatcttctt gagtaagcgc ggcgtttgac cacgcatgtt gaatacgaaa
    34861 aatgcggcta ttttacccat caacctgggg gaggcaatca gtgtttacac aggagctgct
    34921 ccagttcgct taatgacgcc acagtccagg ttggatggat acccgcgggc tgctcgcgat
    34981 gatgcgcgtt aagccagcag gtcgacagtc cggcgttaat gccgccaaga atatcggact
    35041 ccgcggtatc gctaaccatt aatacgcgcg agcggtcagg attccccgcc tgctccaggg
    35101 cgtagttaaa gattttcgga tcgggcttcg cgacgccaac ctgctcggaa atcaccagca
    35161 gatcgaaata ctcgcgcagc ccggtgcgct ccagacgagt ttgttgtagc gcggtaaaac
    35221 cgttagtaat aataccgatt ttagcctgcc cgcgaatcgc attaagtagc gaaacggcgc
    35281 ccggcaaagg agaacagatc tccgccatcg cactaataaa agcgtcattc agccgccccg
    35341 gcgcaacgtt tagccgttca gcccaacttt gaaagcgcgc gtgctgcaat tgtaatgaag
    35401 taatcgcgcc gttctgataa tccacccata gcggcttatt cacggcctgg taatcctgga
    35461 aatcctcagc ggtaaaggtg acgctatagt caaggaacat ccgctgtaag ccggtgaaag
    35521 aatcaaacgt aaacagcgtt tcatcggcat caaagaaaat ccagtcccac ttcatcatta
    35581 caccttgcct cttttattac atgcttatcg gtaacgccat gatgatggcg tcctcatgcc
    35641 cttgtgccgt gggatagtaa ttgcggcgaa tcgtcgcctc gttaaacccc agactttcat
    35701 acagcgcgat ggcggcagcg ttagaggcgc gtacctccag ccataacgtt acaacaccgc
    35761 gtttttccag ttcatcaatc agatgctcaa gcagcatacg ccccagcccc cgacgctgaa
    35821 aatccggatc gacggcgata ttgaacagcg tcgcttcgtc cagcaccacc tgtgtaatgg
    35881 caaacgcggc cattctgtca tcagcagtca gcttaaagtt gagataccgt tcgccctggt
    35941 tgccgaaaaa cgttttttcg ctccacggaa acgcatgagc gcgttgctca atctgccagg
    36001 ctgcggggag atcggtcgtg ctgaggatag aaatcgtgtt catgttcgca gatttgttgc
    36061 catagtgcgg cgcgtgccgc cgggtttacc cggagttcat taaacgccgg cgtcgtgacc
    36121 tgagcgcctt cgagttggag cggcgcgtca gttcctaacc gccagctatt acaacggctg
    36181 ccctgcggca gcatggcgac gcgctcaggc gtcagcggta aaacctgatc gggactcacg
    36241 gtcaacgcgc gtaaaatatc gcgcattagc ggctcgttca gcgcgggtaa ttcctctgca
    36301 accacgatca gacgaacgtg cgcgggaagg gaaatcgcaa tctcgccctg tagcgcgcca
    36361 ggacgtcgca gcgcccactg cgtaataccc agttgctgta actgccagtc tcgtcgggat
    36421 gtcatagcga aacgctcctg taatcagggg cgcaaatata gcaaatctgt cgaatctccg
    36481 ccatcaaact actataatcg ccgccagtct gaattaagga gcattccatg tctgctttta
    36541 ccccggcaag tgaagtcttg ctgcgccaca gtgatgattt cgaacaaagc cgtattcttt
    36601 ttgccggaga tttgcaggat gacctgcccg cgcgctttga atgcgccgcc agccgcgcgt
    36661 atacgcaaca gtttcaccac tggcaggcgt taagccgcca gatgggcgat aacgtccgtt
    36721 ttagcctggt cgcgcaagcc agcgatgtcg ctgactgcga tacgctgatc tactactggc
    36781 cgaaaaataa acccgaagcg cagttccagt tgatgaatat tttgtcgctg atgccggtgg
    36841 gcagcgatgt tttcgtcgtg ggagaaaacc gcagcggcgt gcgtagcgcc gaaccgatgc
    36901 tggcggacta tgcgccgctg aacaaagtag atagcgcgcg acgttgcggc ctttaccatg
    36961 gtcgtctgga aaagcagccg cagtttagtc ttgaatcctg gtgggccgag tacaatatcg
    37021 acgggctgac catcaaaacg ttgccgggcg tattcagccg cgacggactg gatgttggta
    37081 gccaactgct gctgtctacg ctgacgccgc acaccaaagg taaagtgctg gatgtcggct
    37141 gcggcgctgg cgtgctttcc gccgcgctgg ccagccattc gccgaaagtg cgcctgacgc
    37201 tgtgtgacgt cagcgcgccg gcggtggaag ccagccgcgc cacgcttgcc gctaatggtc
    37261 ttgaaggcga ggtattcgcc agcaacgtct tttcggaagt caaaggacgt tttgacatga
    37321 tcatctccaa cccgccgttc cacgacggaa tgcaaaccag ccttgatgcg gcgcaaacgc
    37381 tcattcgcgg cgcagtgcgc catctgaaca gcggcggaga gttacgcatc gtggcgaacg
    37441 cctttctgcc ctatcctaag attctggatg agacctttgg cttccatgaa gtcatcgcgc
    37501 aaaccgggcg ctttaaggtt tatcgtatcg tgatgacccg tcaggcgaag aaatagttgg
    37561 cctgataagc gcagcgccat ctggttgcat gtgccggatg gcgacgccag gcgtcttatc
    37621 caacctacgt ctcgcgccca tttttgcagc aatcaatcta tcccatgcaa ttaactattg
    37681 acgaatagct gaaaaccact agaatgcgcc tccgtggtag tgattctttt caagaatcga
    37741 tggtatgcga aggtggcgga attggtagac gcgctagctt caggtgttag tgtccttacg
    37801 gacgtggggg ttcaagtccc ccccctcgca ccaaaaccat gttgatattg ctcgcactgg
    37861 gcgaaggtgg cggaattggt agacgcgcta gcttcaggtg ttagtgttct tacggacgtg
    37921 ggggttcaag tcccccccct cgcaccaacg aggcgatatc aaaaagtaag ataactgtgc
    37981 gaaggtggcg gaattggtag acgcgctagc ttcaggtgtt agtgtcctta cggacgtggg
    38041 ggttcaagtc ccccccctcg caccaattat cttatccttc ctttgtccct tcattttcat
    38101 ccctgattcc agttcatcat tgccaacatc atgccgccaa taagcgctat acacgatggc
    38161 agcagtacaa aatgccgtaa ttgtttgtga tacaacatca gcgcagacag tagcaatcct
    38221 gatacaatca acagcttcag cgcataagct gacaggccga taaacgccag tccaacgata
    38281 atcactccag gcaataacac gccccatccg ctgcctaacg tccgctgcaa catggtttca
    38341 cctctggaat tgataatgat aaccaatatc atatgatata ttttctcatt tgtcagccag
    38401 ggagaaagct aaagagatga gttttactta acggttgatg acacgtattc agtaaggtga
    38461 taaattgtcc gactgttaac gtaaaaacaa caacacctcg ctttaggcga ccttttctca
    38521 tacgttattt tcatgttggc gcccgattcc gtgtatatca ctgataaata acgacaatta
    38581 cccatgacaa caccatcctg gcgatcgctt cgtattaaga agtatcagtt ttctttacgt
    38641 cttttcttgt ttctcagcgc cgtgtcggcg ctatttactc tcgttttccc cctttatcag
    38701 atcaatgtat tttgcacgcc aatgatcggg atagtgggcc tgagcgtatt actgttgata
    38761 tggcatggga aatatgggca aaaaagaatt aacctcccct ttatctccct actctttggg
    38821 ggaatatggg cggcgcgtat tgcgctaaag tatccggcgt taggccatta tgatttctct
    38881 tttttactga tctccctgct tagcgttctg tttatcggct cgatagcctt tgccgcgaat
    38941 atcgtcgcgt ttacgctcta ttcgctaccg ccagtcgcgg tctgcctgtg gttgaacggt
    39001 aatgaacaag gtttgcgaat tctctatttg ctggccctgc caatggtggg aatcgctatt
    39061 caacatgtta tccagaaacg ctacgataat tttgcccaac agctcatgtt taagctgctg
    39121 gccgagcggg aaaccctcaa tggcctgagt atgcttgatc cattaaccgg cttatataac
    39181 cgccgtggcc tgcaaaatcg gctggatacg ttacaggcgc cgggcagcca tgaacactac
    39241 gtcctgctat tggatatcga tcatttcaaa gcgtataacg atcactacgg tcatatgatg
    39301 ggcgatcagg cgttaatccg cgtctcagcg gcaattcggg acgccgtgcg atcgcgcgat
    39361 gtcgtctgtc gttttggcgg ggaagaattt ctggtgttgc tgaccaccgc cgaaccacag
    39421 caagcccgcg ctaccgcaga acgtatccga caggaagtat acgatcttaa aatcccgcat
    39481 atgtttaacg aaagcgtcgc caccaatgtc actgtcagta tcggcattgc gcccttgacg
    39541 gatcgcaata tcggagacgc tatcgaaaaa gcggataaag cgctctacga agccaagcat
    39601 cttggacgta accacattct ggtcagcgac gacatgcgcg ccctatgaat cctgttggcg
    39661 taatcgtgct acgccaacag cgttaaccat aaaccgcttg ccatcgttta tcgctatcga
    39721 taggattagc aatcattatc atttagatta acatcattaa actgcgctat ggcctaccgt
    39781 tccgcaccga ttgctgacga tattatctgg cgagctgctc cccagccgga agacgcctcg
    39841 ctggcggacg cagtacgcga gacgatcgcc tctacccgtc agcacctgtt ggacttcatc
    39901 cggctggatg aaacgccgcc gccaacggcg atgactcttg cccagtggac gcgccccgcg
    39961 acgtttcgtt cattgctggc cgcctattcc gatcacatct atcggcacac gccaggcctg
    40021 ccacgtgaaa ataagccgtt actctccctg tgggcgcaat ggtatatcgg gctgatgacg
    40081 ccgccgctga tgctggcatt actgacgcaa gcgcgcgcta tcaatgtctc ggcagaacat
    40141 attcacgttg aatttcatga aaccgggcgc gccgcgtgtt tctggcttga tgtgcatcag
    40201 gataacctgg caacggaacg ttccccggaa gaacgaatgg aaacgctaat agtctccgca
    40261 ctacagccgg tcattcaggc gctggaggcg actggcgaca tcaacgcgaa acttatctgg
    40321 agcaataccg gttatttaat caactggtat ctgactgaga tgaaaccgct gcttggcgaa
    40381 gccctgctgg caacgctacg ccagcgctgt ttttttgaaa agcagctatc cgacggtcag
    40441 gataacccgc tgtggcggac cgtcgtaatg cgcgacggtc ttctggtacg cagaacctgc
    40501 tgccaacgtt accgcttacc tgacgtacag cagtgcggcg actgcacgct aaagtaaacc
    40561 gctttacgtt gccttcagtt atcgtcacgg cttactgctg ctggcctgtc acattattat
    40621 atttacagcg gcgctctccg tatgccaaat tacgttttgc catttttggg tctaccgtgg
    40681 ctattggtaa ggtctcagga gagaagaatg agtctgcaat ctgtacggca atttctggcc
    40741 gctcatgctc ccgatattga aattatcgaa ttaaatcaaa gtacagcgac tgtcgaactg
    40801 gcagccaaag cgcacaacgt agagccaggg cagatagcta agacgctctc gcttaaagta
    40861 aaagacacca ttatcctggt ggtcgcgaaa ggcgatgccc gcctggataa taagaagctt
    40921 aaaaccactt tcggcgcaaa agcccgtatg ttgagcagcg atgaagtggt caatgcaacc
    40981 ggacatcctg tcggcggcgt atgtcctttc gggctggagc acccgctgcc cgtttattgc
    41041 gacatctctc tgaaggggta taacgaagta ttgcctgccg caggcgccac gcacagcgcg
    41101 gtacgcatca cgccggaaag aatggctgaa ctgacatcgg cgacctgggt agacgtgtgc
    41161 caataacgtg cctgacaccc ggattccccg aacaagcacg gcgcatccgg cgcgggctat
    41221 acccgatgct ggagcgcggt agcatctccg gcgcgcagat ataacagaat atccgccgca
    41281 tcgagtaacc cggcatcaga actcacgccc agcttggaca tcacattaaa cttatgcgcc
    41341 cggatagtct taatgttacg ttctaactgg acggcaattt gcggcattga gtagccgttc
    41401 gacatgaaac gcagaatctc ccgctcggtt ggactaagca tacaattctg gtgaagttcc
    41461 caaagattgt ctgtacgctc cgttgtccgc cgggcgctat taagcgatgt aaataaggca
    41521 tcctgtaaaa catccaacgg cgacgctttg ctgatgaccc catccagcgg cagcggggat
    41581 aatgcgctga ttaagcgggc ttcagcatca tcatcggcaa tcaccagacg ccgcatatgg
    41641 ggataattta tcgccagttc cgtcaggctg gataatcctg tccggcgttc agttcttaac
    41701 gcagaaagag aaaaaataac ggcagaaaac ggcgtcttta gcgcagcctt ataaaacgcg
    41761 gatggttttg aaaaaatatg aagcgtatgt cggcaatccg gcattgcatc aaatagccct
    41821 ttaataccaa tggtgctcat cacgcatttt tctacgagcg caacatttct cttgctgatt
    41881 ctgttttcca ttccatggtt tctccatata ccgaaggtag gttcaattct ctggctccct
    41941 gagaactgtt tatccatgca tacatctctg cattactgtg tattgataag cgtcgcatgg
    42001 cgctattttt ttgggcgcta attgttttat tacttttttt aagtaacgcc gcaatttggt
    42061 taatgcccca cccttttcct aaaaggcgta atacttttcg ttcagacagc gtaaggacaa
    42121 tcggcctgtc gtgggactgc tgaatttcag acggtacctg aggcgataat aacgttttac
    42181 ttattctttc tgagcgagcg tttcccgcat ggataacgct aataagattc tcgattggct
    42241 cttcgtctga aagcaaggtg ctgacggggc ccatcaggag atcaaccgca tgtggatagc
    42301 aggatttagg aaccagaaat acccaatgta tgtcgcgata ttgcgagatt aagctataaa
    42361 aatattcgca gatagcgcgg ggagaggcat tgttaactgc taaatcagca ataactaaat
    42421 tacttcggcg tagctgtagc agcgttagct cttctatcgt acgacaatac gccagtttat
    42481 aatcggggaa attacctgtt atagcccctt taaggccttc ctgtataaga ggggttttac
    42541 tgataataag tccatttttg cagcatcctg gcagcataat tcctccgcac ccacgccgcc
    42601 acttttcatt gccccattaa taaaaacact attaacaatg atcgcaaaga aatataggcc
    42661 gagtggatta attatccttg ttttattttt aaatatctaa cattgattgc gctacaatcc
    42721 acatagcaca aaaacatgaa atcactatcg catagttact cataaaacca gaagcaagac
    42781 aattaaatta actaaatttg cacattagca attctaacga aaacgcatca tattaataaa
    42841 tttaaaatat gagttcgccc ttcattcata ttgctgagtc ctaaaacaaa agcccaacaa
    42901 tactgtccac catccataaa acccatgtaa tatctacgaa ttacactaag tcatgcctat
    42961 ttttacaccc gctgctcacg ccattgtggt taaaccatta atgcatatag ttgataaaat
    43021 tcaccacatc attgattcaa aaatgagcgg ccagactggc ataatgcctc tattctggaa
    43081 acggacatac gagaaccgtc gcccataagg atatcctgcc tgtgacgaag cgcacgtctc
    43141 aggaagctta tgcgttgcgt ctggtggttg acgtttttat caacaagaaa ttgatcttaa
    43201 ccaacgccat catgcctgcg cttcgtgtta aaaagaaagc ctctgtcata gtggcggcgc
    43261 atagaatgtc ttttcggaca ggacgagtca tgcaagaaga gcaatcaatt caacgagcag
    43321 taacacggtt atgtattcaa tgcgggctgc ttttattgca gcacggggcg gaaagcgcac
    43381 tggttgatga gctttccacc cgcctcggtt tggcgctcgg tatagatagc gtcgaaagcg
    43441 cgatctcctc taacgccatt gtcctgacga ccattaaaga cggacaatgt ctgacatcga
    43501 cacgtaaaaa ccaggatcgc ggcattaata tgcacgtcgt cacggaggtt cagcatatcg
    43561 ttatcctcgc ggaacatcgt ctgctggatt acaaaggcgt ggaaaaacgc tttagccagc
    43621 tccgcccgct gcgttatccg cgctggctgg tggcgtttat ggtcggtctt tcctgctcct
    43681 gcttttgtaa gctgaataat ggcggctggg atggcgcggt tatcaccttt ttcgccagta
    43741 tgatagccat gtatatccgc cagatgctgg cgcagcggca tttacatccg cagatcaatt
    43801 tttgcattac cgcctttgtc gctaccacga tttccgggct gatgctcacc cttcccgcct
    43861 ttagccagac gcccactatc gccatggcgg cgagcgtact gctactggtg ccgggctttc
    43921 cgctgattaa ttccgtcgca gatatgttta aaggacatat taataccggg ctggcgcgct
    43981 gggctatcgc cagcctgttg acactggcca cctgtgtggg cgtagtgatg tcaatgacaa
    44041 tatgggggct acgaggatgg gtataatcga ctttttactg gcgctaatgc aggacatgat
    44101 cttgtctgcg atccccgccg tcgggtttgc gatggtcttt aatgttcccc accgggcgct
    44161 tccgtggtgc gcgctactgg gggcgctggg tcatggcttg cgtatgctga tgatgagcgc
    44221 aggctttaat atcgaatggt cgacgtttat ggcttcgctg ctggtcggca gtattggtat
    44281 tcagtggtca cgctggtatc tcgctcaccc taaagtgttt accgtcgcgg ccgtgatccc
    44341 gatgtttccg gggatttccg cctataccgc gatgatttcc gcagtaaaaa ttagccatct
    44401 gggctatagc gaaccgatga tgattacgct gctgaccaat tttctgaaag cctcttccat
    44461 tgttggcgcg ctctcaattg gcctctctgt accgggatta tggctgtacc gcaaacgccc
    44521 ccgcgtgtga tcggtggaac gcctcctgct gttcttacag gtctgtgtgg tactataaaa
    44581 acagtcgccc ttctcggttg ttgttccata ttgagaaaca ttatgtcttc cagaatttta
    44641 acgtcggacg tcatcggtat tgacgtcctt ttacacgatc atcatgctgt gctggcgaag
    44701 tcaacgggcg gcgcagtggc ggtattcgct aataatgcgc ctgcctttta tgccgtgacg
    44761 cctgcacgca tggctgaact gctggcgctt gaagaaaagt tatcacgtcc gggaagcgat
    44821 gtggcgttag acgcgcaatt ttacgaagaa cccgaagccg cccccgttgc gattccctgc
    44881 ggaaaattcg ccatgtatcc cgcctggcaa ccggatgcgg attttcagcg tcaggctgcc
    44941 ctttggggcg tggcgcttcg ggagcctgtc accgcagaag agctagcggc gtttatcgcc
    45001 tactggcagg cggaaggtaa ggtttttcac catatccagt ggcagcaaaa gctggcgcgc
    45061 agcgtgcaaa tcagccgttc cagcaatggc ggaatgccgc agcgcgacat caatagcgtc
    45121 agcgaacctg acaatcatat tccaccaggt tttagggggt aacgatgaaa aatgttggcg
    45181 acctgatgca gcgtctacaa aaaatgatgc ctgcgcatat tacgccggcg tttaaaacgg
    45241 gcgaagaact gctggcctgg cagaaagagc agggcgagat ccgggcggca gcgctggcgc
    45301 gggaaaatcg ggcgatgaaa atgcagcgca cctttaaccg ttccggcatt cgaccgctgc
    45361 atcaaaactg ctcgtttgat aactatcggg ttgagtgcga cggacaaatg aacgcgttaa
    45421 gcaaagcccg acagtacgtg gatgaatttg acggcaatat cgccagcttt gtcttttccg
    45481 gcaagccggg aaccggtaaa aaccatctcg ccgcggctat ttgtaacgag ctgctgctgc
    45541 gcggaaagtc ggtactgatt atcaccgtag cggatattat gtcagcgatg aaagacacgt
    45601 tcagcaatcg ggaaaccagc gaagagcagt tgcttaacga tctgagtaac gttgatctgc
    45661 tggtgatcga cgagatcggc gtgcagaccg aatcccgcta tgaaaaagtg atcatcaatc
    45721 aaattgtcga tcgtcgttcc tcgtcaaaac gtcccaccgg catgttgacg aacagcaata
    45781 tggaagagat gacgaaaatg cttggcgaac gcgtcatgga ccgtatgcgt ctcggcaaca
    45841 gtttatgggt taattttagc tgggacagtt accgcagccg agtgacgggt aaagagtatt
    45901 aaattgcaac gtgcgccagg gcgatacgac gcctagctgg cataacacag gtgattacca
    45961 tgaatacagc gaaacatgtt ctgtgctgcg cggcgatcgc cagcgtactg atttccacca
    46021 gcggtattgc cgccagtcag ttaagcgctc agggcgcgaa cgcacagcag ggcgggatgt
    46081 cgctttctgc gctaaccggt ctgctcagca gaggtgccca gtcgctcagt gctgataata
    46141 tgaataatgc cgccggtatt ttgcagtact gcgccaaaca gaaactggcg tccgctacca
    46201 acgtggaaaa cgttaaaaat cagattctga acaagttagg gttggatacc acacagcagg
    46261 agcaggacac taactacctg aacggcctgc aagggttgct caagacgaag gacggccagc
    46321 aattgaacct caataatatc ggcagtacgc cgctggcgga aaaggtgaaa accaaagctt
    46381 gcgatctggt gttgcagcaa gggctgaatt tcctctcctg actgcgcttt tctgaccgtg
    46441 cgccacgccg ggacgccctg ttaaaagccg tgttttggcc ctttacccgc caacacggca
    46501 ttaacccgac ttttctcttc gtcttttcct gttattaacc gctatggcag gaagtgatgc
    46561 cgatcaaaaa accaactttc taaactcatt ctaaataaca gcgccgtgta aagttattag
    46621 aattgcagca atgtgacatc gctattacat tgttagaaat tttttcctgc cagcgataag
    46681 cctggtttat tgaggatcgt cagttgtccg agttgctctc tgtcgctctg tttctcgcct
    46741 ctgtgctgat atatgcctgg aaggcgggcc gtaacacttg gtggtttgcc gccactctca
    46801 cggtgctggg actttttgtc attctgaata ttaccctgta tgccagcgac tattttaccg
    46861 gcgacgggat caacgacgca gtgctttata cgctcacgaa tagtctgacg ggagcgggag
    46921 tcggcaaata tattctgccg ggaatcggca ttgccctggc gttagtggcg gtattcggcg
    46981 cgctgggatg ggtactacgc cgccgccgtc accatcctca tcatgtcggt tacagcctgc
    47041 tggcgttact gctggcgttg ggttcggtcg acgccagccc ggcgtttcgc cagattaccg
    47101 aactggtaaa atcacaaatg cgcgatggcg atccggattt tgccgtttat tataaagaac
    47161 cagcaaaaac cattcctcat ccgaagctca atctggtcta tatctacggc gagagcctgg
    47221 aacggaccta ttttgataat gacgcgttcc ccaatctcac gccagagttg ggcgcgctga
    47281 aaaatgaggg gctggatttc agccatacca tgcaactgcc gggaacggat tacaccatcg
    47341 ccgggatggt ggcttcccag tgtggtattc cgctgtttgc gccgtttgag ggcaatgcgt
    47401 ccgcgtcggt ttccagcttc ttcccgcaga atatctgcct cggcgatatt ctgaaaaact
    47461 ccggctacca gaactatttc gtgcagggcg ctaacctgcg ttttgccggg aaagacgtgt
    47521 tcctgaaatc acacggattt gatcatctgt acggcgctga agagctaaaa acggtggtgg
    47581 cggacccgtc ttatcgtaac gactggggct tctacgacga tacggtgctt gatgaggcat
    47641 ggaagaaatt tgaagcgctt tcccgctcag gccagcgttt ttcgctgttt acgctgaccg
    47701 tagatactca ccacccggac gggtttatct cacgcacctg caaccgtaaa cgctacgatt
    47761 acgacggcaa gcccaaccag tcctttagca ccgtaagttg cagccaggaa aacatcgccg
    47821 agtttatcaa caaaatcaaa gcgtcaccgt ggtttaaaga taccgttatc gtcgtctctt
    47881 ccgaccatct ggcgatgaac aatacggcct ggaaatacct gaataagcaa gatcgcaaca
    47941 atctgttttt cattctgcgc ggcgataaac cgcagcagga gacgctggcg gtcaaacgca
    48001 acacgatgga caacggcgca acggtgctgg atattctcgg cggcgataat tttatcggtc
    48061 tgggacgtag cagcctttcc gggcagtcgc tgtcggaagt gttcctgaat gtaaaagaga
    48121 aagtgctggc gatgaagccg gatatcattc gcctgtggaa tttcccgaaa gagataaaag
    48181 attttaccgt cgatcgggac aaaaacatga tcgcgttttc cgggagccac ttccgcctgc
    48241 cgttactact gcgcgtatcg gataagcgcg tcgagccgtt accggaaagt gaatactccg
    48301 ctccgctacg gttccagttg gccgacttcg ccccgcgcga taatttcgtt tggatcgatc
    48361 gctgctacaa aatggcgcag ctatgggcgc cggcgctggc gctctctacc gactggtgcg
    48421 tctcgcaggg acagcttggc gggcagcaaa ccgtacagca tgttgataaa gcgcagtggc
    48481 agggtaagac ggcgtttaaa gacacgatga tcgatatgga gcgctacaaa ggcaacgtcg
    48541 ataccttaaa gattgtcgat aacgatattc gttataaagc cgatagcttt atttttaatg
    48601 tggcgggcgc gccggaggag gtgaagcagt ttagcggcat ttcccggccg gagtcctggg
    48661 ggcgctggtc aaatgcgcag ttgggcgatg aggttaaaat cgaatataaa gcgccgctgc
    48721 cgaaaaagtt tgatctggtg atcaccgcca aagccttcgg cgacaacgcg aatcggccga
    48781 ttccggtacg cgtaggcaac gaagaacaga cgctggtgct gggtcacgat gtgtccacta
    48841 tcacgctgca tttcaacaac ccgacggacg cgaatacctt agtcattgcg ccgcccgctc
    48901 ccgtctccac caacgaaggt aatattttgg gccattcgcc gcgcaaattg gggattggca
    48961 tggtggagat caaagtggtg aatgttgaga gttaaaagag aatgtcatat atgccgggtg
    49021 cggctacgcc ttacccggcc tacacatcat ctttatcaat aaactggcgc ataggcctgg
    49081 taagcgctac gccatcaggc aaaagtgtga acatctcatc cggcctacgg tcgtctgtag
    49141 gccgactgtt caccactacg cccttaaaac gtttcccaat tatcgctgcc gtcggccaca
    49201 gcggcctttg gtgacgacac ggctgccggg gtttttaccg ctgccacttc acgcgcacgc
    49261 tgctgttgct ggtgaatacg gaacaccgcg acggcctggg tcagacggct ggcttgctct
    49321 tccagcgccg cagccgcggc ggcggactct tccaccagcg aggcgttctg ctgcgttacg
    49381 cgatccatct ccgctaccgc caggcccacc tggtcgatac cacggctttg ctcgtcagac
    49441 gccgaggcaa tctcgcccat aatgtcggtc acgcgggtaa ctgcattgac gatctcatcc
    49501 atggtttcac cggcgctttc gaccagcgtc gaccctacat caacacggct cacggaatcc
    49561 tcaatcagac tcttgatctc ccgtgccgcc tgcgcgctac gctgggccag attacggact
    49621 tcaccggcca ccaccgcgaa cccgcgtccc tgctcgcctg cgcgcgccgc ttctaccgcc
    49681 gcattcagcg ccagaatatt ggtctggaaa gcaataccgt cgattacgct gataatatcg
    49741 gcgattttct gcgaactgga ggcgatatcg cgcattgttt gtacgacgtt atccactact
    49801 ttgccgcctt tttgcgctgt ctctgacgca ctcagcgcca gatggctggc ctgacgggcg
    49861 ttttcggcgt tctgtttcac ggtggcggtc agttgttcca tactggcggc ggtctcttcc
    49921 agagacgctg cctgctgctc agtacgggaa gagagatcgt tgttgcccat cgcaatctcg
    49981 ctggcgccgc tatagattgc attcgcgccg ttacgtacat cgccaacggt acgcatcagt
    50041 tcactttgca tatgacgcag gttttcagcc aactgcccca tttcgttgga gccttccacg
    50101 tcgatacgct tcaccagatc gccgctggcg atatgacgaa tgctttcaat cagacgattc
    50161 atcggggcga taagcgacag tttgatgccg aaccagacgg cgataatgac caccagaacg
    50221 gcaatcagca cactgaccag tacccacatc gcctggttgt aggaactgtt gttatcctca
    50281 acagcaatat cgtacagacg atcgttttgc tgcatatagg ccatgtactg cttctcaaaa
    50341 gcgtcctgat agctttgagt cggttgatca aaaactcgtt aatcttaccc gcgccaagaa
    50401 gctgaataag ctccgccaac gcgtcgtggt agatatcata ggttcgtttg atctcaagga
    50461 aagccgcctc actctgacgt ggatcgcgcg gtaacgcctc atactgcgcc cagttttttt
    50521 cggtcagctt cagcgtattg gtcgccccct gcatcagttc agcgacagtt gcgccgctgc
    50581 caatattgct ctggtccatc atccagcgga tacccgcgcg attcagggta ttacgcgttt
    50641 gcaacagttc cacccagatt gcattcaggg cagactgctg ctgacgaatg gtttgcaata
    50701 cggtgaagtt ttctttgtca ttcttcagcg agttgaagaa cagcccgccg gatgtcagtt
    50761 gtaaaaggcc aaatagcgcc aataccagca gtaagctggt aacaatttta attcgcttta
    50821 acatgttttc tctttccgct agacagatac agaattttcg gcctggaaag ggaaaacttt
    50881 atgggatgcg cgccattaat atcacgatta gctcagtgaa gtcgttatga cgccccgcgc
    50941 aacaaggatc gtcccatttt atatcgtgat ctcaatcaca taaaatagcc cacgccctcc
    51001 tccgcgaaac cgcttaccgg tacgtccgac cgcttaaacc gccatacaac cactcactga
    51061 tttacctaac tttacgcgcg cgatgatctg gcaagatcct ctcagcatag cagtcaatct
    51121 acctcctcaa acacgaactc aatgtccacc cagcttcggc tgataattaa acttacaacc
    51181 aggttttact atggatacga aaaagatatt caagcacata ccctgggtga ttctcggaat
    51241 catcggtgct ttctgcctct cggtcgttgc cctacgtcgg ggtgaacacg tgagcgccct
    51301 gtggatcgtg gtcgcttccg tttccgtcta tctggtggct taccgctact acagcctgta
    51361 catcgcccag aaggtcatga aactcgaccc gacgcgcgcg acgccggcgg ttatcaataa
    51421 cgacggcctg aactacgtgc cgactaaccg ctacgtgctg tttggtcacc acttcgccgc
    51481 catcgccggc gcaggtccgc tggtcgggcc ggtattggcc gcgcagatgg gctatctgcc
    51541 ggggacactg tggctgctgg cgggcgtagt gctcgcgggc gcagtgcagg actttatggt
    51601 gctgttcatc tcttcccgcc gtaacggcgc ctctcttggc gagatgatca aagaagagat
    51661 ggggaccgtt ccaggcacca tcgcgctatt cggctgcttc ttaatcatga tcatcatcct
    51721 cgcggtgctg gcattaattg tggttaaagc gctggccgaa agcccgtggg gcgtcttcac
    51781 tgtctgctca acggtgccga ttgcgctgtt tatgggcatc tacatgcgct tcctgcgtcc
    51841 gggacgcgta ggcgaagtct ccgttattgg tatcgtgctg ctggtggcgt ctatttactt
    51901 cggcggcgta attgcccacg acccgtactg gggcccggcg ctgaccttta aagacaccac
    51961 cattaccttc gcgctgatcg gctacgcctt tgtttccgcg ctgctgccgg tatggctgat
    52021 cctcgccccg cgcgactatc tcgctacctt cctgaaaatc ggcgtgatcg tcggtctggc
    52081 gctggggatt gtgatcctca acccggaact gaaaatgcca gcattgacgc agtatgtcga
    52141 cggtaccggc ccgctgtgga aaggcgctct gttcccgttc ctgttcatca ccatcgcctg
    52201 tggcgccgtc tctggcttcc acgcgctcat ctcttccggc accacaccga aactgctggc
    52261 ctgtgagacc gatgcgcgtt ttatcggcta cggcgcgatg ctgatggagt cctttgttgc
    52321 ggtgatggcg ctggtggcgg cctcgatcat tgaaccgggt ctctacttcg cgatgaacac
    52381 cccgccggca ggtctgggca ttaccatgcc aaacctgcac gagatgggcg gcgagaacgc
    52441 gccgctgatt atggcgcagt tgaaagacgt tactgcacat gcagcggcga ccgtcagctc
    52501 ctggggcttt gtgatttccc cggaacaaat cctgcaaact gcgaaagata tcggtgaacc
    52561 gtcagtattg aaccgcgcag gcggcgcgcc aacgctggca gtaggtatcg cgcacgtgtt
    52621 ccacaaagtc ctgccgatgg cggatatggg cttctggtat cacttcggta ttctgttcga
    52681 agcactgttt atcctgaccg cactggatgc gggtacccgt tccggccgct ttatgttgca
    52741 ggatttgctg ggtaacttcg tcccgttcct gaaaaaaacc gattctctgg tcgcgggtat
    52801 catcggtacc gcaggctgcg tcggtttgtg gggctatctg ctgtatcagg gtgtggtcga
    52861 cccgctgggc ggcgtgaaga gcctgtggcc gctcttcggt atctctaacc agatgctggc
    52921 cgccgtggcg ctggtgttga gcaccgtggt actgatcaaa atgcagcgca ccaagtacat
    52981 ctgggtgacg gtaatcccgg cggtatggct gctgatctgc accacctggg cactgggcct
    53041 gaaactgttc agcgccaacc cacagatgga aggtttcttc tacatggcaa acctgtataa
    53101 agagaagatt gccaacggca ccaacctgac cgcgcagcag attgccaata tgaaccatat
    53161 cgtggtgaac aactacacta acgctggttt gagtattctg ttcctggtgg tggtgtacag
    53221 tattatcttc tacggtttca ccacctggat gaaggtacgc aacagcgata aacgtaccga
    53281 taaagaaacc ccgtatgtgc ccgtgccgga aggcggcgtg aagatctctt cacaccacta
    53341 aaactgatgc cgggtagcgc acagcgatcc cggctagtgt aggccggata aggcgcaagc
    53401 cgccatccgg ctttattcat taacaggacg gcagaatgtt tgatacttta ggtcaggcaa
    53461 aaaaatatct cggccaggcg gcaaaaatgt tgattggtat tccggactac gacaactatg
    53521 tcgagcacat gaaaaccaac catcccgaca agccgtacat gacctatgaa gagttcttcc
    53581 gcgaacgtca gcaagcacgt tacggcggcg atggcaaagg cggtatgcgc tgttgttaat
    53641 ggagagacta tgaccccgat tgcagttacc ctacttaccg gttttcttgg tgccggcaaa
    53701 accaccctac tacgccatat cctcaacgaa caacatggtt ttaaaatcgc cgttatcgaa
    53761 aacgaatttg gcgaagtctc cgttgacgat caactgattg gcgatcgcgc cacacagatc
    53821 aaaaccctga ctaacggctg catctgctgt acccgctcca acgagctgga agatgcgcta
    53881 ttagacctgc tcgacagccg cgaccgcggc gatattgctt tcgaccgcct ggtgattgaa
    53941 tgcaccggca tggccgaccc cggcccgatt attcagacct ttttctacca tgacgtatta
    54001 tgcgaacgct acctgttaga cggcgtgatt gcgctggtcg acgcggtgca cgctaacgag
    54061 cagatgaacc agttcaccat cgcccagtcg cagataggct acgccgaccg tatcctgctg
    54121 accaaaaccg acgtggcagg cgacagcgag aaactgcgcg agcggctggc gcgtatcaac
    54181 gcccgcgccc cggtttacac cgtggtacac ggcgatattg acctgagtca gttgtttaat
    54241 accagcggct ttatgctgga agagaacgtg ctggcaagcc aaccgcgttt ccactttatt
    54301 gccgataaac agaacgatgt gtcgtcaatt gtggtggaac tggattaccc ggtggatatc
    54361 agcgaggttt cgcgggtgat ggaaaacctg ctgctggaat cagcggataa actgctgcgt
    54421 tacaaaggga tgctgtggat cgacggcgaa cccaaccgcc tgctgttcca gggcgtgcag
    54481 cgtctctaca gcgccgactg ggacagaccg tggggcgacg aaacgccgca tagcacgcta
    54541 gtgtttatcg ggatccagtt gccggaagac gagatcagag cggcgtttgc ggggttaagg
    54601 aagtaaccat taagcgctta tctggcctgg cgggaatttg taggccggat aaggcgcagc
    54661 cgccatccgg catcttctgg ctatttctta ttttgctcgc gcagcatcgc ttcgcgcaga
    54721 atggcattca gccgcgtctg gtagcctttt cctggccgtt tcagccattc cataacgtcg
    54781 gcgtcaatac gcaccgaggc ctgagttttt aacgggcgaa aaaacttacc acgcactgct
    54841 tcagaccact gtccatcctc cgaagcggga atgtcgctgt aatcaatctc atcatctgat
    54901 tttttcgcca gcgccttcag ttcagcctca tgctgagcac tcagcgcgga tgcgttgccg
    54961 cgtttatgtt taaccatgct cataacgatt cctctctttt ctgtctgcct tacgagcgct
    55021 gatgatacgg ataacttcaa aaccactttc gaaccgaacg ctatgagcaa ccagaatgac
    55081 cacaatgcca tgaacaaggc cgagggtctg ccaacgatat tctccattct cataacgctc
    55141 ctgacgtgac aggtgtcggg gatcgtcaaa caccagtacc gcatcctcaa agcggacacc
    55201 gtgcttcctc aggttgcttt tagccttgtt cgcatcccat tcaaactcca tcggcatgtg
    55261 ttttccctaa ttgtatatac aaaaatgtat atacaattat cttacgatta tacctggatt
    55321 gttggaaata gcttcacaat ttgcgtattc gagataaaag aaaattgacc agaagagtag
    55381 gccgcagaag gcatgggttt aggctgatac gcagccatag aaagtcacgt gatttctggg
    55441 cgagaggaaa cacaggtgcc cacaacgtgg tccatctcaa ttacccgtaa tcaggttcca
    55501 gcgttaccac tactcaaagt aatccatatc gagctttggc aacttgagta aacgtgagga
    55561 tacgccaata tcattatcaa tcatcagatg caccagcctg tcgccatcca ccagcaccag
    55621 accttcaact ttgttagcat agtctctggc atgcgccgta aagcctgagg tggtaataaa
    55681 gacgccacgt ttcacttttt gctcaggcaa tgcaccataa aagcccctga cttcagcgct
    55741 cccgacggtg cctttccagc gtttggcctg aacgtagact ttttccagcc cgagcttatc
    55801 gagagagata ataccgtcaa tgccgccatc gccggttccc ccgacgcgct gcaaatcacc
    55861 gcgatgaccg ccatatccca ggcggtgcaa cacatctaac acaatcactt caaaacgcgc
    55921 cggcgaaacc tgaagcaggt tctccagcaa ttcttcggca acagattcac gaatctcatt
    55981 gagcgcttgc tccaggcgat cgtccgggct gcttctggca agctcatcat cctcaatcga
    56041 ttctggctgt ggatctaacg ccaccgcatc tgccggctta ctgagcttta cgccgttaaa
    56101 atcacaagca aaatgactca cttcctgctc ggtcatcggc tgcggatgcg aggcaaccca
    56161 gctcattccc gctggtgtta aacaccattt tccccgggat aggctctgcg ataacccggc
    56221 gcgtttgaga cgatcgtgcg cccaaccggt gcggttctgg tacgtcagtt gtccactggt
    56281 aatcacctct gcacgctgct gctcatttaa cccaagcatt tcggctgcag cttcacgcac
    56341 ttctctgacc aaagcgccct cgggtcgagt ggccagaaaa cgcaacactg gttcaataaa
    56401 tttgtcatat gttggaacag ccataaatcc atccctgcta ttgatataga ttagataccc
    56461 cgccggagaa cgatactctt caggaaaaca ttaggaaaga agcagttact ctctgattgt
    56521 tcgttgatca cacacaatat gaagtctacc atgggtctgt tattttccct ttacggcaca
    56581 aggtaataac gtcttcccgc tcaggaaccg gatagataaa aatgaacaaa tctaacttcg
    56641 actttctcaa aggcgtcaac gacttcattt acgccatcgc ctgcgcggcg gaaaacaact
    56701 atccggacga tcctaatacc actctgataa aaatgcgcat gtttggcgaa gccaccgcga
    56761 aacatctcgg ccagttgctg gatatacccg tctgcgaaaa ccaacatgac ctgctacgcg
    56821 aactgggcaa gattgcgttt attgatgaca gcatcctttc tgttttccat aagctgcgcc
    56881 gtatcggtaa cctggccgtc cacgaatttc ataacgatct ggacgatgcc cagatgtgcc
    56941 tgcggctcgg gttccgcctc agcgtctggt actaccgact ggtaaccaaa gattacgatt
    57001 tcccggtgcc gatgtttgtt ctgccagaac acggcgagaa tctttatcac caggaagtgc
    57061 tgacgctgaa acaacagttg gaacgtcagg cgcaagagaa agtacaaagt caggccgaac
    57121 tggaagctca gcagcaaaga ctggttgcgc tcaacggcta cattgccatc cttgagggca
    57181 aacagcagga aaccgaagcc cagaccaaag cacgtctggc cgcgctggag gcacagcttg
    57241 cggcaaaaga tgccgaactg gcgaagcaaa ccgaacagga acgtaaggcc tatcacaaag
    57301 agatcaccga tcaggctatc aagcgcacgc tgaatctcag cgaagaagag agccgcttcc
    57361 tgatcgacgc ccagttgcgc aaagcgggct ggcaggccga cagtaaaacg ctgcgctttg
    57421 ccaaaggcgc tcgcccggaa cccggcgtca ataaagcgat tgccgaatgg ccaacgggta
    57481 cagatgaaac gggaaaaaca ggctttgccg attacgtatt gttcgttggc ctgaagccca
    57541 tcgccgtcgt tgaagcgaaa cgcaaaaata ccgatgtctt cagcaagctc aacgagtctt
    57601 accgctacag taaatacttc gataacggat ttttacgcga cacgctgctg gagcactacg
    57661 ctcccgacga agtgcatgac gccgtgccag agtatgaaat cagctggcag gacaccagcg
    57721 gcaaacagcg ctttaaaatc cccttctgct actccaccaa cgggcgcgaa taccgcgcag
    57781 cgatgaagac caaaagcggt atctggtatc gcgatgtccg acacaccacc aatatgtcaa
    57841 aagcgctgcc ggaatggcat cgcccggaag agctgctgga tatgctgggc agcgacccgc
    57901 agaaacaaaa ccagtggttt gctgaaaacc ccggaatgag cgaactcggc ctgcgctatt
    57961 accaggagga tgccgtccgc gcggtggaaa aggctatcgt taacggccag caagagatcc
    58021 tgctggcgat ggcgaccggt accggtaaaa cccgtaccgc catcgccctg atgttccgcc
    58081 tgatccagtc gcagcgtttc aaacgcgttc ttttcctggt cgaccgtcgc tcgcttggcg
    58141 aacaggcgct ggggtcgttt gaagacacgc gcattaacgg cgacaccttt aacagcattt
    58201 ttgatatcaa agggttgacc gacaaattcc cggaagacag caccaaaatt cacgtcgcca
    58261 cggtgcagtc actggtcaag cgtacgctgc aatccgatga gccaatgccg gttggccgct
    58321 acgactgtat cgtcgtcgat gaagcacacc gcggctacat tctcgataaa gagcaaaccg
    58381 agggcgagct gcagttccgc agccagctgg attacgtttc cgcctaccgt cgcattctcg
    58441 accatttcga tgcggtaaaa atcgccctga ccgccacgcc agcgctgcat acagtggaga
    58501 ttttcggcga accggtttac cgctacacct accgtacggc ggtgatcgac ggttacctga
    58561 tcgatcagga tccccctatt cagatcgtca cccgcaacgc gcaggatggg gtctatcttt
    58621 ccgagggtga acaggtggag cgcctgaacc cacagggcga gctgatcaac gacacgctgg
    58681 ccgacgatca ggattttgag gtcgccgact ttaaccgtgg cctggtgatc ccggcgttta
    58741 accgcgcggt atgcggcgag ctcaccaaat acctggatcc catcgggcaa caaaaaacgc
    58801 tggtgttctg cgtcaccaac gcccatgccg acatggtggt tgacgaactg cgtaccgcgt
    58861 ttaagaaaaa gtatccgcag cttgagcacg acgcgatcat caagatcacc ggtgatgccg
    58921 ataaagacgc gaagaaagtg caaagcatga tcgtccgttt caacaaagag cggttgccca
    58981 atatcgtggt caccgtcgat ctgctgacca ccggtgtgga tattccgtct atctgtaata
    59041 ttgtgttcct gcgcaaagtc aaaagccgca ttctctacga gcagatgaag ggccgtgcca
    59101 cgcgtttgtg cccgtcggta gggaaaacca gctttaagat ttacgactgc gtggatatct
    59161 acagttcgct ggaaagcgtc gacaccatgc gcccggtggt tgtgcgtccg caggtggagc
    59221 tgcaaacgct ggtcaacgaa attaccgact cagaaaccta caaaaccatt gaagcggatg
    59281 gccgcagttt tgccgaacac agccatgaac agctggtcgc taagctgcag cggattatcg
    59341 gtcttgccac ctataaccgt gaccacagcg aaacggtgga taagcaagta cgtcgtctgg
    59401 acgaactgtg cctggatgcc gcgggcgtta actttggtgg tctggcttcg cgcctgcggg
    59461 aaaaagggcc gcactggagc gccgagattt tcaataagct tcctggtttt atcgcccgcc
    59521 tcgaaaggct gaaaaccgat atcaacgccc tgcgcgatgc gccgatcttc ctcgatattg
    59581 acgatgaggt ggtgagcgtc aaatcgctgt acggcgacta cgatacgccg caggactttc
    59641 tcgaagcgtt cgatgcgctg gtgcaacacg cccctaacgc ccagccggcg ctgcaggcgg
    59701 tgatcaatcg tccgcgtgac ctcacccgta aagggctggt ggaattgcag gagtggtttg
    59761 accgccagca ttttgaagag tcctctctgc gcagcgcgtg gaaagaaaca cgcaatgaag
    59821 atattgccgc ccgcctgatc ggccatatcc gccgtgcggc ggtgggcgat gcgctcaaac
    59881 cgttcgacga gcgtgtcgat cacgcgctgg cgcgtatcaa aggcgagaac gactggagcc
    59941 ctgagcagct aagctggctc gaccgtttag cgcaggcgct gaaagagaaa gtggtgctcg
    60001 acgacgacgt cttcaaaacc ggcaatttcc accgtcgcgg cggtaagtcc atgttacagc
    60061 gcacctttga cgacaacctc gacagcgtgc tggataagtt cagcgattat atctgggacg
    60121 agctggctta agagggtatc atccccgttt tcgccggatg gcggcgatgc cttatccggc
    60181 ctacacgtaa ccctgtaggc ctgataagcg aagcgccatc aggcatctga aatgctcaat
    60241 cacttttgcg acccacaatg gtggtcgcca tgtcaaatgg gatcttcaat gaacaataac
    60301 gatctggtcg ccaagctgtg gaaactgtgc gacaacctgc gcgacggcgg cgtctcctat
    60361 caaaactacg ccaatgaact cgcctcgctg ctgtttttga aaatgtgcaa agagaccggt
    60421 caggaagcgg actacctgcc ggaaggctac cgctgggatg acctgaaatc gcgcattgac
    60481 caggagcagt tgcagtttta ccgtaaaatg ctggtgcatc tgggggaaga taagaaaaaa
    60541 ctggtgcagg cggtatttca taatgtgtgt acaaccatca ctgaacccaa acagataaca
    60601 gaattagtca gcaacatgga ttcgctggac tggtacagcg gtacacgcgg caagtcccgc
    60661 gacgacttcg gcgatatgta cgaagggctg ctgcagaaga acgctaacga aaccaaatcc
    60721 ggcgcgggcc agtacttcac cccgcgtccg ctgatcaaaa ccattattca tctgctgaag
    60781 ccgcagccgc gtgaggtggt gcaggacccg gctgccggga ccgcaggttt tttgattgaa
    60841 gccgaccgtt acgtgaagtc gcagaccaac gatctggatg accttgatgg cgacacccag
    60901 gatttccaga tccaccgcgc gtttatcggc ctcgagctgg tgcccggcac ccgtcgtctg
    60961 gcgctgatga actgtctgct gcacgatatt gaaggcaacc tcgaccacgg cggcgccatc
    61021 cgtctgggca acacgctggg cagcgacggc gagaatttac cgcaggccga tattgtcgcc
    61081 accaacccgc cgtttggcag cgccgcgggc accaacatta cccgcacctt cgtgcacccg
    61141 accagcaaca aacagctttg ctttatgcag catattatcg aaaccctgcg ccccggcggc
    61201 cgtgcggcag tggtggtgcc ggataacgta ctatttgatc gagttggatt ggaaattcgt
    61261 cgagatttaa tggacaaatg ccatctgcac accatcctgc gtctgccgac cggcatcttt
    61321 tacgcccagg gcgtcaaaac caacgtgctg ttctttacca aaggtacggt agccaatccg
    61381 actcaggata aggactgtac cgatgacgtg tgggtgtacg acctgcgcac caatatgccg
    61441 agatttggta agcgtacacc gtttactgag caatacctgc agccgtttga aaccgtctat
    61501 ggtgaggatc cgcacggctt aagcccacga gccgaaggtg agtggagttt taacgctgaa
    61561 gagacggaag ttgctgacag cgaagagaac aaaaacaccg atcagcacca ggccaccagc
    61621 cgctggcgca agttcagccg cgagtggatc cgcacggcaa aatccgattc gctggatatc
    61681 tcctagctga aggataagga cagcatcga
//
LOCUS       DAJVSD010000002        55311 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.002, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000002 DAJVSD010000000
VERSION     DAJVSD010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 55311)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 55311)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..55311
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.002"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(87..806)
                     /locus_tag="OQP62_000061"
     CDS             complement(87..806)
                     /locus_tag="OQP62_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1719723.1"
                     /translation="MIEQPDSKSAKPLYKQLEDALKEAIARGEYKPGQQIPTENELSV
                     RWQVSRVTVRKALDALTRENLLTRVSGKGTFVSGEKFQRSMTGIMSFSELCQSQGRRP
                     GSRTIKSVFESVDDETKALLNMNDGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLD
                     EDLNNHSLYECLREKYHLWFTHSRKMIELVYASFEVAHYLGVNEGYPLILIKSEMIDN
                     KGELSCVSQQLIVGDKIRFTV"
     gene            1131..2780
                     /locus_tag="OQP62_000062"
     CDS             1131..2780
                     /locus_tag="OQP62_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalase"
                     /protein_id="HCS1719724.1"
                     /translation="MLNQKLNPTPSEDLTIDVDLFYETDPCELKLDEMIEAEPEPEMI
                     EGLPASDALTPADRYLELFEHVQSTKLFPDSKTFPDCAPKMDPLDILIRYRKVRRHRD
                     FDLRRFVENHFWLPETLSSEYVSNPENSLKEHIDQLWPILTREPQDHIPWSSLLALPQ
                     SYIVPGGRFSETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYY
                     LSRSQPPVFALMVELFEEDGVRGARRYLDHLKMEYAFWMDGAESLALNQAYRHVVRMP
                     DGSLLNRYWDDRDTPRDESWLEDVETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRD
                     AGRLASIRTTQFIPIDLNAFLYKLESAIANISALKGERDTEALFRQKASDRRAAVNHY
                     LWDDENGCYRDYDWRREEMALFSAASIVPLYVGMANHEQADRLANVVRSRLLTPGGIM
                     ATEYETGEQWDKPNGWAPLQWMAIQGFKRYGDDMLGDEIAHNWLKTVNHFYQEHHKLI
                     EKYHISGGTPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP"
     gene            complement(2793..4382)
                     /locus_tag="OQP62_000063"
     CDS             complement(2793..4382)
                     /locus_tag="OQP62_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1719725.1"
                     /translation="MTNSASQATRAPFEHSLGIIRQASIEILLLLGIHTTEGKEPRWF
                     MEQLEQARLNLGGWGAVAKKLRINDAQLSQFMLQLRHLQQHVPQYDSGQEVSENQLLA
                     ALRFVTSLEHLRQQQPLLTYQTELEDPDQEAHLEAQRQLRAIELTLKALIARAWPDRA
                     SLNHYLKQHFGPDRLRQWLKQGEDQHALEGMLFSELALMVVDKKLFARHYVRIFNDAS
                     ALTLFAESRTTLRMFLDDCRLARNEVIARQPLTSAQLMLLNVQYQQIVRPIQRAYAEK
                     RTRVNPASFLLADERELRQFWETARLKDRQAGGDKHEISESIEPPRKRPPRTPEEREQ
                     LISGALWGGVGVMTLAILAGAFWLFSSSSPSSDNGQAPAMAQDEPPREAPSARETLNH
                     MGITWDAFTMRAAIERNDTRVTALFLQGGMNWQLAWTEQAFAAGHTEVLQLLLRYPAL
                     MDEVKPCRRFITTLSHDMSSGAPLTAMHKTYLQTFCTVPAVVTRQQYDTEQAQLRAQA
                     RPSADNKKWLKIQSAIYDAIH"
     gene            4663..5019
                     /locus_tag="OQP62_000064"
     CDS             4663..5019
                     /locus_tag="OQP62_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HCS1719726.1"
                     /translation="MPHISSRFSSACIAFIKQWQGLSLEKYRDRQGNWVIGYGHMLTP
                     DETLTFITPDQAEAFLLDDLNSCDMLLQNCLPELNDRFQRETLIALMFSIGHQRFLSL
                     INTDDISQPEISGLRI"
     gene            complement(5025..5627)
                     /locus_tag="OQP62_000065"
     CDS             complement(5025..5627)
                     /locus_tag="OQP62_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HCS1719727.1"
                     /translation="MQVIMFDRQSIFIHGMKISLQQHIPGISIQSVGQAEELWQKIES
                     APDALVMLDSGLDAEFCREVLQRTAQQFPEVKIIITAMDGSQKWLHEVMQFNVQVVVP
                     RDSDAETFVLALNTVARGMMFLPGDWLNSTELESHDIKALSARQREILQMLAAGESNK
                     QIGRALNISTGTVKAHLESLYRRLDVKNRTQAAMMLNESN"
     gene            6258..7157
                     /locus_tag="OQP62_000066"
     CDS             6258..7157
                     /locus_tag="OQP62_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1719728.1"
                     /translation="MDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQL
                     GIRLLHRTTRRVQLTQDGMVYYERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGL
                     ANSLIMPRLLTFLHQYPGIALELCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLGK
                     LRRVNCASPQYLARFGYPENLDDLASHAMVHYSLTPGVSSPGFAFETPHGMQWVKTGG
                     MLTVNSTETWHTACLAGLGIIQTPRIAVREALRAGALIEILPQYRAAPLPVTLHYPHR
                     RNLSRRVHLFMVWLTETIKEAAE"
     gene            7230..8258
                     /gene="yhjD"
                     /locus_tag="OQP62_000067"
     CDS             7230..8258
                     /gene="yhjD"
                     /locus_tag="OQP62_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YhjD"
                     /protein_id="HCS1719729.1"
                     /translation="MTQENDVKRPIQELEHDPIQKIETQPHDAPEKNEKANQALHSVT
                     TLMQKIQRQPMVAHLIRATERFNDRLGNQFGAAITYFSFLSMIPIMMVSFAAAGFILA
                     SHPNLLEDIFSKILMNVSDPTLASTLKNTINTAVQQRTTVGLVGLGIALYSGVNWMGN
                     LREAIRAQSRDVWERKPQDQEKIWLKYLRDFISLIGLLIALIITLSITSIAGSAQQMI
                     ISALYLDSIEWLKPAWHLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFIAAI
                     GFEVIKIIMTYTLPSLVKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDP
                     RMPGKTQR"
     gene            8609..9931
                     /locus_tag="OQP62_000068"
     CDS             8609..9931
                     /locus_tag="OQP62_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HCS1719730.1"
                     /translation="MQATATTLDHEQEHVPVNSRNKVVIASLIGTAIEFFDFYIYATA
                     AVIVFPLIFFPQGDPTAATLQSLATFAIAFVARPIGSALFGHFGDRVGRKVTLVASLL
                     TMGISTVIIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRA
                     LYGSFPQLGAPIGFFFANGTFPLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVS
                     LHETPVFAKVAAAKKQVKIPLGTLLTKHVHVTILGTFIMLATYTLFYIMTVYSMTYST
                     AAAPVGLGLPRNEILWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLIILFALF
                     AFTPLLGSGNPALVFVFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVSSI
                     LGASVAPYIAAWLQSHYGLAAVGVYLASMAALTLIALLLTHETRHQAL"
     gene            complement(9971..12031)
                     /locus_tag="OQP62_000069"
     CDS             complement(9971..12031)
                     /locus_tag="OQP62_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HCS1719731.1"
                     /translation="MTKAGKITAAITGTFLLLIAIVILLIATFDWNRLKPTINQKVST
                     ELNRPFAIRGDLGVVWERQKQESGWRSWVPWPHVHAEDVILGNPPDIPEVTMVHLPRV
                     EATLAPLALLTKTVWLPWIKLVKPDARLIRLSEKTNNWTFNLAQDKNTDPNAKPSAWS
                     FRLDNILFDQGRIAIDDKVSKADITILVDPLGKPLPFSEVTGTKGKADKSTVGDYVFG
                     LKAQGRYNGEPLTGTGKIGGMLALRSESTPFPVQADFRSGNTRVAFSGVVNEPMKMGG
                     VDLRLKFSGDSLGDLYDLTGVLLPDTPPFETDGRLVAKIDAEKSSVFNYRGFNGRIGD
                     SDIHGTFTYTTGKPSPKLEGDVESRQLRLADLGPLIGVDSGKDAEQSKRSEQRKGEKN
                     VQPADKVLPYDRFETDKWDVMDADVRFKGRRIEHGGSLPISDLSTHIILKNADLRLQP
                     LKFGLAGGSIVSNIHLEGDKKPMQGRADIQARRLKLKELMPDVELMQKTLGELNGDAD
                     IRGTGNSVAALLGNSNGNLKLLMNDGLISRNLMEIVGLNVGNYIIGQIFGDDEVRVNC
                     AAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSP
                     LYVRGTFKNPQAGVKPGPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILT
                     QMKQ"
     gene            complement(12141..12908)
                     /gene="pdeH"
                     /locus_tag="OQP62_000070"
     CDS             complement(12141..12908)
                     /gene="pdeH"
                     /locus_tag="OQP62_000070"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase"
                     /protein_id="HCS1719732.1"
                     /translation="MIKQVIQQLRVPDAGIENLQERRYWLQCERAYTYQPIYQTDGRL
                     MTVELLTAVTHPDNPSRRIAPDRYFAELAVRHRIDVVKEQLHQLEQKADFFTRHRLLA
                     SVNVDGPTLIAMRQQPDILAAMERLPWLRFELVEHIRLPKDSSFASMCEFVPLWLDDF
                     GTGMANFSALSEVRYDYIKVARELFVMLRQSPEGRNLFILLLQLMNRYCRGVIVEGVE
                     TLEEWRDVQRSPAFAAQGYFLSRPVPLISLEEVILTL"
     gene            13137..14066
                     /locus_tag="OQP62_000071"
     CDS             13137..14066
                     /locus_tag="OQP62_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1719733.1"
                     /translation="MSKKIAVIGECMIELSQKGADVQRGFGGDTLNTSVYIARQVDSA
                     ALAVHYVTALGTDSFSQQMLEAWQHENVDTSLTQRMENRLPGLYYIETDDTGERTFYY
                     WRNEAAAKFWLESEQSAAICETLATFDYLYLSGISLAILSPTSRDKLLSLLRECRANG
                     GKVIFDNNYRPRLWTSREETQQVYQKMLECTDIAFLTLDDEDALWGKQPVEEVIARTH
                     AAGVQEVVVKRGADSCLVSIQGEALIDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLT
                     GGSATDAAKRGHLTASTVIQYRGAIIPHDAMPQ"
     gene            complement(14120..15607)
                     /locus_tag="OQP62_000072"
     CDS             complement(14120..15607)
                     /locus_tag="OQP62_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HCS1719734.1"
                     /translation="MQGTKIRLLAGSLLMLASAGYVQADALQPDPAWQQGTLANGLQW
                     QVLATPQRPSDRIEVRLQVNTGSLTESTQQSGFSHAIPRIALTQSGGLDAAQARSLWQ
                     QGFDPKRPMPPVIVSYDSTLYSLSLPNNRNDLLKEALTYLANVSGKLTITPETVNHAL
                     SSEDMVATWPADTKEGWWRYRLKGSALLGHDPAEPLKQPVDAAKIQAFYEKWYTPDAM
                     TLIVVGNIDARSVAEQINKTFGTLKGKRETPAPVPTLSPLRAESVSIMTDAVRQDRLS
                     IMWDTPWQPIRESAALLRYWQADLAREALFWHIQQELTKNNAKDIGLGFDCRVLFLRA
                     QCAINIESPNDKLNTNLSLVANELAKVRDKGLSEEEFTALVAQKNLELQKLFATYART
                     DTDILTGQRMRSLQNQVVDIAPEQYQKLRQNFLNSLTVDMLNQNLRQQLSQEMALILL
                     QPQGEPEFNMKALKATWDEIMVPATAAAVEADEAHPEVTETPAAQ"
     gene            complement(15827..17113)
                     /gene="dctA"
                     /locus_tag="OQP62_000073"
     CDS             complement(15827..17113)
                     /gene="dctA"
                     /locus_tag="OQP62_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DctC"
                     /protein_id="HCS1719735.1"
                     /translation="MKTSLFKSLYFQVLTAIAIGILLGHYYPELGAQMKPLGDAFVKL
                     IKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALINGLIIVNVVQPG
                     AGMNVDPATLDAQAVAVYAAQAKEQGIIAFLMDVIPGSVIGAFASGNILQVLLFAVLF
                     GFALHRLGSKGQLIFNVIESFSQVIFGIINMIMRLAPIGAFGAMAFTIGKYGVGSLVQ
                     LGQLIICFYITCILFVVVVLGTIARVTGFSIFKFIRYIREELLIVLGTSSSESALPRM
                     LDKMEKLGCRKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNSHMDIFHQITLLV
                     VLLLSSKGAAGVTGSGFIVLAATISAVGHLPVAGLALILGIDRFMSEARALTNLVGNG
                     VATVVVAKWVKELDHQKLDDVLNNRAPDGKTHEISS"
     gene            complement(17271..19277)
                     /gene="hmsP"
                     /locus_tag="OQP62_000074"
     CDS             complement(17271..19277)
                     /gene="hmsP"
                     /locus_tag="OQP62_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001266355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator HmsP"
                     /protein_id="HCS1719736.1"
                     /translation="MRVSRSLTIKQMAMVAAVVMVFVFVFCTVLLFHLVQQNRYNTAT
                     QLESIARSVREPLSSAILKADLPGAETILESIKPAGVVSRADVVLPNQFQALRKRFIP
                     ERPVPVMVTRLFELPVQISLPVYSLERPANPQPLAYLVLQADSYRMYKFVMSALSTLV
                     TIYLLLSLILTVAIAWCVNRLIVHPLRKIARELNDIPQQELIGHQLALPRLHQDDEIG
                     MLVRSYNLNQQLMQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTTALIIVT
                     CETLRDTAGVLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHA
                     ITLGQQILTIINERLPIQGIQLRPSCSIGIAMYYGDLTAEALYGRAVSAAFTARRKGK
                     NQIQFFDPAQMEAAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQ
                     QPDGSWELPEGLIERIESCGLMVTVGHWVLEESCRQLAAWQERGVTLPLSVNLSALQL
                     MHPGMVSDLLELLNRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDF
                     GMGYAGLRQLQHMKSLPVDILKIDKMFVDGLPDDHSMVTAIILMARSLNLQLIAEGVE
                     DEAQRAWLEQAGVNVAQGFLFARPVPADIFEERYLSHENPDYKS"
     gene            complement(19451..22994)
                     /gene="bcsC"
                     /locus_tag="OQP62_000075"
                     /pseudo
     CDS             complement(19451..22994)
                     /gene="bcsC"
                     /locus_tag="OQP62_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462517.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsC"
     gene            complement(22976..24078)
                     /gene="bcsZ"
                     /locus_tag="OQP62_000076"
                     /pseudo
     CDS             complement(22976..24078)
                     /gene="bcsZ"
                     /locus_tag="OQP62_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012219336.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase"
     gene            complement(24085..26385)
                     /gene="bcsB"
                     /locus_tag="OQP62_000077"
     CDS             complement(24085..26385)
                     /gene="bcsB"
                     /locus_tag="OQP62_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis cyclic di-GMP-binding
                     regulatory protein BcsB"
                     /protein_id="HCS1719737.1"
                     /translation="MKRKLSWMCAAVIGLSAFPAFMTAAAPAMPPLINAEPTEPAQSP
                     VTEAPVVAQTAPSREVKLTFAQIAPPPGSMALRGVNPNGGIEFGMRSDEVASKAVLNL
                     EYTPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQVPINPLFITDFNRVRLE
                     FVGHYRDVCENPASSTLWLDIGRNSALDLTYNMLAVNNDLSHFPVPFFDPRDNRPVTL
                     PIVFADMPDLAQQQAASIVASWFGSRAGWRGQRFPVLYNHLPDRNAIVFATNDRRPDF
                     LRDHPAVNAPVIEMMNHPDNPYVKLLVVFGRDDKDLLQAAKGIAQGNILFRGSSVVVN
                     DVKPLLARKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAPINVSLNLPPDLYLL
                     RSNGIDMDLNYRYTSPPTKDSSRLDISLNNQFLQAFSLNSTQETNRLLLRLPVLQGLL
                     DGKTDVSIPALKLGAMNQLRFDFRYMNPMPGGSVDNCITFQPVPNHVVIGDDSTIDFS
                     KYYHFIAMPDLRAFANAGFPFSRMADLSDTLAVMPKTPTEAQMETLLNTVGAIGGQTG
                     FPAINLTITDDSAQIADKDADLLIIGAIPGKLKDDKRIDLLVQATQSWVKTPMRQTAF
                     PSIMPDEADRAADAQSTVTASGPMAAVVGFQSPFNDQRSVIALLADSPRGYQLLNDAV
                     NDSGKRAAMFGSVAVIRESGVHSLRVGDIYYVGHLPWFERLWYALANHPVLLAVLAAL
                     SVVLLAWVLWRLLRILSRRRLDPDHE"
     gene            complement(26396..29020)
                     /gene="bcsA"
                     /locus_tag="OQP62_000078"
     CDS             complement(26396..29020)
                     /gene="bcsA"
                     /locus_tag="OQP62_000078"
                     /EC_number="2.4.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-forming cellulose synthase catalytic
                     subunit"
                     /protein_id="HCS1719738.1"
                     /translation="MSALSRWLLIPPVSARLSERYQGYRRHGASPFSAALGCLWTILA
                     WIVFPLEHPRWQRIRDGHKALYPHINAARPRPLDPARYLIQTLWLVMISSTKERHEPR
                     WRSFARLKDVRGRYHQWMDTLPERVRQKTTHLEKEKELGHLSNGARRFILGVIVTFSL
                     ILALICITQPFNPLSQFIFLLLLWGVALLVRRMPGRFSALMLIVLSLTVSCRYIWWRY
                     TSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVPLPKEMSQWPTVD
                     IFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGRESFRQFARHVGVHYIARA
                     THEHAKAGNINNALKHAKGEFVAIFDCDHVPTRSFLQMTMGWFLKEKQLAMMQTPHHF
                     FSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIA
                     VETVTEDAHTSLRLHRRGYTSAYMRIPQSAGLATESLSAHIGQRIRWARGMVQIFRLD
                     NPLFGKGLKLAQRLCYLNAMFHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMIALFV
                     IPHMVHASLTNSKIQGKYRHSFWSEIYETVLAWYIAPPTLVALINPHKGKFNVTAKGG
                     LVEEKYVDWVISRPYIFLVLLNLLGVAAGVWRYYYGPENETLTVIVSLVWVFYNLVIL
                     GGAVAVSVESKQVRRAHRVEIAMPGAIAREDGHLFSCTVHDFSDGGLGIKINGQAQVL
                     EGQKVNLLLKRGQQEYVFPTQVVRVTGNEVGLQLMPLTTKQHIDFVQCTFARADTWAL
                     WQDSFPEDKPLESLLDILKLGFRGYRHLAEFAPPSVKVIFRSLTALIAWIVSFIPRRP
                     ERQAAIQPSDRVMAQAQQ"
     gene            complement(29017..29769)
                     /gene="bcsQ"
                     /locus_tag="OQP62_000079"
     CDS             complement(29017..29769)
                     /gene="bcsQ"
                     /locus_tag="OQP62_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsQ"
                     /protein_id="HCS1719739.1"
                     /translation="MAILGLQGVRGGVGTTSLTAALAWALQILGENVLVIDASPDNLL
                     RMSFNVDFVHQGGWARSLLDGQDWRDAGLRYTSQLDLLPFGQLTSQEWENPQAWQETL
                     GEIGSAIQALKASGRYSWILLDLPYGESPLTRQLVSLCDHTLAIAQVDANCHIRLHQQ
                     ALPAGAHILINDLRIGSQLQDDLYQVWLQSQRRLLPIVIHRDEAMAECMASKQPLGEY
                     RSDSLAAEEVLTLANWCLLHDAGDKTSAGSLR"
     gene            complement(29770..29973)
                     /locus_tag="OQP62_000080"
     CDS             complement(29770..29973)
                     /locus_tag="OQP62_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhjR family protein"
                     /protein_id="HCS1719740.1"
                     /translation="MYNNEPGAQSDPTLGYTFQNDFLALSQAFSLPEIDYTDISQREQ
                     LAAAIKRWPLLAEFAQPHSLRKP"
     gene            30218..31789
                     /gene="bcsE"
                     /locus_tag="OQP62_000081"
     CDS             30218..31789
                     /gene="bcsE"
                     /locus_tag="OQP62_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsE"
                     /protein_id="HCS1719741.1"
                     /translation="MRDTVDPVFSLGISSLWDELRHMPTGGVWWVNADRQQDAISLVN
                     QTIASQTENANVAVIGMEGDPGKVIKLDESHGPEKIRLFTMPDSEKGLYSLPHDLLCS
                     VNPTHYFFILICANNTWRNITSESLHKWLEKMNKWTRFHHCSLLVITPCNNSDKQSSL
                     LMGEYRSLFGLASLRFQGDQHLFDIAFWCNEKGVSARQQLLLCQQDERWTLSHQEETA
                     IQPRSDEKRILSHVAVLEGAPPLSEHWTLFDNNEALFNDARTAQAATIIFSLTQNNQI
                     EPLARRIHTLRRQRGSALKIVVRENIASLRATDERLLLGCGANMIIPWNAPLSRCLTL
                     IESVQGQQFSRYVPEDITTLLSMTQPLKLRGFQPWDTFCDAIHTMMSNTLLPADGKGV
                     LVALRPVPGIRVEQALTLCRPSRTGDIMTIGGNRLVLFLSFCRVNDLDTALNHIFPLP
                     TGDIFSNRMVWFEDKQISAELVQMRLLSPELWGTPLPLAKRADPVINAEHDGRIWRRI
                     PEPLRLLDDTAERAS"
     gene            31786..31977
                     /gene="bcsF"
                     /locus_tag="OQP62_000082"
     CDS             31786..31977
                     /gene="bcsF"
                     /locus_tag="OQP62_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsF"
                     /protein_id="HCS1719742.1"
                     /translation="MMTISDIVQIILFCALIFFPLGYLARHSLRRISDTTRLLFAKPR
                     YVKPAGTLRRATKVKADKK"
     gene            31974..33653
                     /gene="bcsG"
                     /locus_tag="OQP62_000083"
     CDS             31974..33653
                     /gene="bcsG"
                     /locus_tag="OQP62_000083"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsG"
                     /protein_id="HCS1719743.1"
                     /translation="MTQHTQTPSMPSPLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHP
                     LLNLVFMAFLLMPIPKYRLHRLRHWIAIPVGFALFWHDTWLPGPQSIMSQGTQVAEFS
                     SGYLLDLIARFINWQMIGAIFVLLVAWLFLSQWIRVTVFVVAIMVWLNVLTLTGPVFT
                     LWPAGQPTDTVTTTGGNAAATVATAGDKPVIGDMPAQTAPPTTANLNAWLNTFYAAEE
                     KRKTTFPAQLPPDAQPFDLLVINICSLSWSDVEAAGLMSHPLWSHFDILFKHFNSGTS
                     YSGPAAIRLLRASCGQPSHTRLYQPANNECYLFDNLAKLGFTQHLMMDHNGEFGGFLK
                     EVRENGGMQSELMNQSGLPTALLSFDGSPVYDDLAVLNRWLTGEEREANSRSATFFNL
                     LPLHDGNHFPGVSKTADYKIRAQKLFDELDAFFTELEKSGRKVMVVVVPEHGGALKGD
                     RMQISGLRDIPSPSITNVPAGVKFFGMKAPHEGAPIDINQPSSYLAISELVVRAVDGK
                     LFTEDSVNWNKLTSNLPQTAPVSENANAVVIQYQGKPYVRLNGGDWVPYPQ"
     gene            complement(33735..33842)
                     /locus_tag="OQP62_000084"
     CDS             complement(33735..33842)
                     /locus_tag="OQP62_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin Ldr family
                     protein"
                     /protein_id="HCS1719744.1"
                     /translation="MTLTQLGVAFWHDLAAPIIAGIIASVIVNWLRDRK"
     gene            33970..34367
                     /locus_tag="OQP62_000085"
                     /pseudo
     CDS             33970..34367
                     /locus_tag="OQP62_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133841.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
     gene            34485..35783
                     /locus_tag="OQP62_000086"
     CDS             34485..35783
                     /locus_tag="OQP62_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCS1719745.1"
                     /translation="MQDDTLPLNNSNATTTPLSTRLPFTKYDFGWVLLCIGMAIGAGT
                     VLMPVQIGLKGIWVFITAFIIAYPATYIVQDIYLKTLSESETCDDYTDIISHYLGKNW
                     GVFLGVIYFLMIIHGVFIYSLSVVFDSASYIKTFGLTEADLSQSIIYKVAIFAVLVAI
                     ASGGEKLLFKISGPMVVVKVGIILIFGLAMIPHWNLDNISAFPAASVFFRDVLLTIPF
                     CFFSAVFIQVLNPMNIAYRKREPDRVLATRMAIRTHRISYITLIAIILFFSFSFTFSI
                     SHEEAVSAFEQNISALALAAQVIPGQIIHITSTILNIFAVLTAFFGIYLGFHEALKGI
                     VLNVLSRIMDVKNINPLLLTSGICVFIVVTLVIWVSFRVSVLVFFQLGSPLYGIVACI
                     IPFFLIYKVAQLEKLRGLKTWLILLYGILLCLSPLLKLIE"
     gene            complement(36093..37106)
                     /gene="dppF"
                     /locus_tag="OQP62_000087"
     CDS             complement(36093..37106)
                     /gene="dppF"
                     /locus_tag="OQP62_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP binding subunit
                     DppF"
                     /protein_id="HCS1719746.1"
                     /translation="MSTHEATLQQPLLRAIDLKKHYPVKKGIFSPERLVKALDGVSFN
                     LERGKTLAVVGESGCGKSTLGRLLTMVETPTGGELYYQGQDLLKHDPHAQKLRRQKIQ
                     IVFQNPYGSLNPRKKVGQILEEPLLINTSLSKEQRREKALAMMAKVGLKTEHYDRYPH
                     MFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQDMGLSYVFI
                     SHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQALLSATPRLNPDDRRER
                     IKLTGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQLKEYDGQLVACFAVDQDENPQK
                     PLS"
     gene            complement(37103..38086)
                     /gene="dppD"
                     /locus_tag="OQP62_000088"
     CDS             complement(37103..38086)
                     /gene="dppD"
                     /locus_tag="OQP62_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HCS1719747.1"
                     /translation="MALLNVDQLSVHFGDEGTPFKAVDRISYSVKQGEVVGIVGESGS
                     GKSVSSLAIMGLIDYPGRVMAENLLFNGQDLKRISEKERRNLVGAEVAMIFQDPMTSL
                     NPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
                     RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVA
                     EAAHKIIVMYAGQVVETGAAQDIFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPG
                     KYDRPTGCLLNPRCPHATDRCRAEEPALNQLDDGRQSKCHYPLDDAGRPTL"
     gene            complement(38097..38999)
                     /gene="dppC"
                     /locus_tag="OQP62_000089"
     CDS             complement(38097..38999)
                     /gene="dppC"
                     /locus_tag="OQP62_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010426221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter permease DppC"
                     /protein_id="HCS1719748.1"
                     /translation="MSQVTENNVNAAPAPMTPLREFWHYFKRNKGAVVGLAYVLIVIL
                     IAVFANFIAPYNPAEQFRDALLAPPVWQEGGSWAHILGTDDVGRDALSRLMYGARLSL
                     LVGCLVVVLSLVMGIILGLVAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS
                     IGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAP
                     LIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAI
                     LLTVLAFNLMGDGLRDALDPKLKQ"
     gene            complement(39009..40028)
                     /gene="dppB"
                     /locus_tag="OQP62_000090"
     CDS             complement(39009..40028)
                     /gene="dppB"
                     /locus_tag="OQP62_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter permease DppB"
                     /protein_id="HCS1719749.1"
                     /translation="MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGI
                     SPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLEL
                     GVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW
                     NLTPVSGRVSDMVFLDDTNPLTGFMLIDTAIWGEEGNFIDALAHMILPAMVLGTIPLA
                     VIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLA
                     GAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPR
                     IRHKK"
     gene            complement(40185..41792)
                     /locus_tag="OQP62_000091"
     CDS             complement(40185..41792)
                     /locus_tag="OQP62_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS1719750.1"
                     /translation="MSISLKKSGMLKLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNP
                     QLFTSGTTYDASSVPIYNRLVEFKTGTTEVIPGLAEKWDISEDGKTYTFHLRKGVKWQ
                     SSKDFKPTRELNADDVVFSFDRQKNEQNPYHKVSGGSYEYFEGMGLPDLISEVKKVDD
                     HTVQFVLTRPEAPFLADLAMDFASILSKEYADNMLKAGTPEKVDLNPVGTGPFQLVQY
                     QKDSRILYKAFDGYWGTKPKIDRLVFSITPDASVRYAKLQKNECQVMPYPNPADIARM
                     KEDKNINLMEQAGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKEAIIKAVYQGAGVAA
                     KNLIPPTMWGYNDDIKDYGYDPEKAKALLKEAGLEKGFTIDLWAMPVQRPYNPNARRM
                     AEMIQADWAKIGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATLFSC
                     DAAQQGSNYSKWCYKPFEDLIQPARATDDHNKRIELYKQAQVVMHDQAPALIIAHSTV
                     YEPVRKEVKGYVVDPLGKHHFENVSVE"
     gene            complement(42348..43672)
                     /locus_tag="OQP62_000092"
                     /pseudo
     CDS             complement(42348..43672)
                     /locus_tag="OQP62_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462533.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-xanthine permease"
     gene            complement(43730..44854)
                     /locus_tag="OQP62_000093"
     CDS             complement(43730..44854)
                     /locus_tag="OQP62_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
                     /protein_id="HCS1719751.1"
                     /translation="MAHLTQDSTFTLGRRPAGLIYADKAKSFGGYTLFAPQTAEGRVY
                     LVDEQGEVAHQWQLPVRAGRDAVLLPNGNLGYNGSHRTSANLYPAWDLWHGGDFYEVT
                     PDNEIVWHYEDIYHHHDAQWLANGNLLYTAASPLPADIAARVTGGDPRRDAPDGVIQS
                     DVVKEVNRDGEVVWEWRAWEHLNPEDFPIHDIFDRRHWPMINGLSVTRDGLVLMSLRT
                     TSGVIAVDKESGKVIWHAGPEVVAQQHTPVEMENGSILVFDNGNLRPGVTSPHSTVLE
                     FDPQIKAITWQYRDIFPPAFFSPYMGSAQRLANGNTFICESAFGRLFEVTPEGETVWE
                     YIIPFFNEYPEHLSKGIIPGKQNSAFRAHRYAADAISWLK"
     gene            45004..46011
                     /locus_tag="OQP62_000094"
     CDS             45004..46011
                     /locus_tag="OQP62_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HCS1719752.1"
                     /translation="MAVQNKKRAKLIDVARHAGVSPGTVSNALHNTRFVEPQTRRRIE
                     EAIVALNYTPNIRARQLRTGKTNTIALLSSVPLAIASGASRLGFMMEVALTSAMMALE
                     KQHALILVPPGVNPLDAVSFDAAILIEPAENDPQLQALAQAGIPCVTIGRTPGTDTPV
                     PWVELHSAATAQLLLTHLEASGASKCALFVGNTRRTSVLESEAAYQRWCAGRQDPVVY
                     SLNESEGENAGYQAAQQLLQAHPDVDGVLVLIDTFASGAVRAFQEQDIAIPEQIRVVT
                     RYDGIRARESLPPLTAVNMHLDEVARQAITLLFAVLSGEKVSYSDGIMPELVVRASTC
                     R"
     gene            complement(46002..46120)
                     /locus_tag="OQP62_000095"
     ncRNA           complement(46002..46120)
                     /ncRNA_class="other"
                     /locus_tag="OQP62_000095"
                     /product="RtT sRNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00391"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="rtT sRNA, processed from tyrT transcript; Derived
                     by automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00391"
     gene            complement(46156..46232)
                     /locus_tag="OQP62_000096"
     tRNA            complement(46156..46232)
                     /locus_tag="OQP62_000096"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(46196..46198),aa:Pro,seq:cgg)
     gene            complement(46323..47954)
                     /gene="eptB"
                     /locus_tag="OQP62_000097"
     CDS             complement(46323..47954)
                     /gene="eptB"
                     /locus_tag="OQP62_000097"
                     /EC_number="2.7.8.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid A phosphoethanolamine
                     7''-transferase"
                     /protein_id="HCS1719753.1"
                     /translation="MRYIKSMTQQKLSFLLALYIGLFMNCAVFYRRFGSYAQEFTIWK
                     GLSAVVELGATVLVTFFLLRLLSLFGRRVWRVLATLVVLFSAGASYYMTFLNVVIGYG
                     IIASVMTTDIDLSKEVVGLHFVLWLIAVSVLPLIFIWSNHCRYTLLRQLRTPGQRFRS
                     AAVVILAGVMVWAPIRLLDVQQKKFERATGIDLPSYGGVVANSYLPSNWLSALGLYAW
                     AQVDESSDNNSLINPARKFTYVAPKDGDDTYVVFIIGETTRWDHMGIFGYERNTTPKL
                     SLRCMFVREGGADNNPQRTLKEQNVFAVLKQLGFSSDLYAMQSEMWFYSNTMADNISY
                     REQIGAEPRNRGKTVDDMLLIDEMQNSLAQNPEGKHLIILHTKGSHFNYTQRYPRSYA
                     QWKPECIGVDSGCTKAQMINSYDNSVTYVDHFITSVFDQLRDKKAIVFYAADHGESIN
                     EREHLHGTPRNMAPPEQFRVPMLVWMSDKYLASPQHAQMSAHLKQQAEIKVPRRHVEL
                     YDTIMGCLGYTSPNGGINQNNNWCHIPDAQKVAAK"
     gene            complement(48185..48889)
                     /locus_tag="OQP62_000098"
     CDS             complement(48185..48889)
                     /locus_tag="OQP62_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS1719754.1"
                     /translation="MIVRKRRGRRTLRCLAGLMACSFFINTTYAWQQEYIAEAAPGHT
                     TERYTWDSDHQPNYNDILAERIQSTQNTVGPVLSLADETPLDATSGISMGWNFSLSRR
                     VTTGPVAALHYDGSTSSMYNEYGDSATTLALTDPLWHASVSTLGWRVNSQFGDVRPWA
                     QISYNQQFGENIWKAQSGLSRMTAGNQAGNWLDVTVGADVLLNPHLAAYAAFSQAENS
                     ATDSDYLYTLGVSARF"
     gene            49046..49627
                     /gene="tag"
                     /locus_tag="OQP62_000099"
     CDS             49046..49627
                     /gene="tag"
                     /locus_tag="OQP62_000099"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HCS1719755.1"
                     /translation="MQRCDWVSQDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGL
                     SWITVLKKRENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAW
                     LAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTT
                     ICYSFMQACGLVNDHITGCFCHPGEKHDSQIPE"
     gene            49605..50045
                     /locus_tag="OQP62_000100"
     CDS             49605..50045
                     /locus_tag="OQP62_000100"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS1719756.1"
                     /translation="MIRKSQSEDMASILALWMKSTIYAHPFIEERYWHESEAIVRDVY
                     LPAAQTWVWEENGQLKGFVSVLEARFVGALFVAPDALRHGIGKALLEYVQQRFPLLSL
                     EVYQKNQSAVNFYHALGFRIEDSAWQEDTSHPTWIMSWQADQTP"
     gene            complement(50014..52347)
                     /locus_tag="OQP62_000101"
     CDS             complement(50014..52347)
                     /locus_tag="OQP62_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HCS1719757.1"
                     /translation="MTHAPSRHSVLTAAHWGPVRVETDGERIFASYGELPTAHQNSLQ
                     TVVHDQVHSKTRVRFPMVRKGFLASPDKPQGIRGQDEFVRVSWDDALDLIHAQHKRIR
                     ESYGPSSIFAGSYGWRSNGVLHKAATLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVV
                     GGNEVYQQQTSWPVVLEHSEVVVLWSANPLNTLKIAWNASDEQGLDYFAALRQSGKRL
                     ICIDPMRSESVDFFGDKMEWIAPHMGTDVALMLGIAHTLVENGWQDEAFLARCTTGYD
                     RFADYLLGTTDGTAKTAEWAAEICGVSAVKIRELAEIFHHNTTMLMAGWGMQRQQFGE
                     QKHWMIVTLAAMLGQIGTPGGGFGFSYHFANGGNPTRRAAVLASIQGSIPGGVDAVDK
                     IPVARIVEALENPGGFYQHNGMDRRFPDIRFIWWAGGANFTHHQDTNRLIRAWQKPEL
                     VVISECFWTAAAKHADIVLPATTSYERNDLTMTGDYSNQHLAPMKQVVSPRWEARNDF
                     DVFAELSERWEAGGYARFTEGKSELAWLETFYNIAAQRGASQGVTLPPFAAFWQANRL
                     LEMPENPANAQFVRFADFRRDPDNHPLKTASGKIEIYSARIASYGYADCPGHPMWLAP
                     DEWHGNADAGQVQLLSAHPAHRLHSQLNYSSLRERYAVAGREPVTIHPQDATTRGIVD
                     GDTVRVWNHRGQVLAGAVVTDGIRPGVICIHEGAWPDPEPTAGGICKNGAVNVLTKDL
                     PSSRLGNGCAGNTALVWFEKYTGPALPLTAFDPPANS"
     gene            52500..53162
                     /locus_tag="OQP62_000102"
     CDS             52500..53162
                     /locus_tag="OQP62_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family lipoprotein"
                     /protein_id="HCS1719758.1"
                     /translation="MKKRVFVIAAIVSGALAVSGCTTNPYTGEREAGKSGIGAGIGSL
                     VGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRS
                     GDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDL
                     NMRLSQQRADSVASSLITQGVDASRIRTSGMGPANPIASNSTAEGKAQNRRVEITLSP
                     LQ"
     gene            53381..54355
                     /gene="ghrB"
                     /locus_tag="OQP62_000103"
     CDS             53381..54355
                     /gene="ghrB"
                     /locus_tag="OQP62_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase GhrB"
                     /protein_id="HCS1719759.1"
                     /translation="MKPSIILYKTLPDDLLHRLEAHFTVTQVPNLHPETVARHAQAFA
                     SAQGLLGTSETVNRALLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTET
                     VADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMAL
                     AQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLF
                     GATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLN
                     MSNVVAVPHIGSATHETRYNMMACAVDNLIDALQGKIEKNCVNPQAAG"
     gene            complement(54405..55115)
                     /locus_tag="OQP62_000104"
     CDS             complement(54405..55115)
                     /locus_tag="OQP62_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3053 domain-containing protein"
                     /protein_id="HCS1719760.1"
                     /translation="MATGKSCSRWFAPVVALLMVFSLSGCFDKEGDQRKAFVDFLQNT
                     AMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQ
                     DYMTQREPLRQANGSLGVLAQQLQNAKLQADAAHGALKQADDLKPVFDQVYKKVVTVP
                     ADALQPLIPAAQIFTQQLVQVGDYIAQQGEQVSFVANGIQFPTSQQASQYNALIGPLA
                     SQHQAFNQAWTAAVNATQ"
BASE COUNT        12794 a        15621 c        14374 g        12522 t
ORIGIN      
        1 atttgatcaa gatggaaacc aaaaaaaatc gggatccgcg atctggatcc cgattcagcc
       61 tgctcttcgt tagcgtaatg ctgacatcat acggtaaacc gtattttatc gccgacaatc
      121 aactgttgcg aaacgcagga gagttctcct ttgttatcaa tcatttcact ttttatcagg
      181 atcagcggat aaccctcgtt aacgccaaga taatgggcga cttcaaagct ggcataaacc
      241 agttcgatca tcttacggga gtgggtaaac cataaatggt atttctcgcg taagcattca
      301 tacaaagagt gattattaag atcttcgtcc agcaaaaacg caaaacgtgg gggaagatgt
      361 acggtttcca gcgataccgc cacatcgtcg gcatagcgga tacgttcaat gacgaccgct
      421 ttttcgccat cgttcatatt cagtaacgct tttgtctcat cgtctaccga ttcaaaaacg
      481 gatttgatgg tgcgtgaccc cgggcgacgt ccctgggact ggcataactc gctgaaactc
      541 atgatgccgg tcatgctacg ctgaaatttc tcaccagaaa caaaggtgcc tttgccggag
      601 acacgggtca gcaaattttc acgcgtcagc gcatccagcg ccttacggac cgtgaccctg
      661 ctcacctgcc agcgcacgct cagttcattt tccgtcggga tctgctggcc tggtttatac
      721 tctccacgcg caatagcctc ttttaaggcg tcttcaagct gcttataaag cggtttggcg
      781 cttttactgt cgggttgctc gatcatttgt atccatttgt attatcatgg tgccatagct
      841 tgtattataa ctatttacgt tacctttgtt tgtgaatcca cgccatgtgg tgacgtagtg
      901 ataccactat gaaacgaatg ttctgatttt aggtctgagg gaggcgtcat gaaaatagga
      961 ttttcgcaat actattcagt aagttatgaa gtgttttttt gagagataaa ttgcaaaatg
     1021 tgatctaccg cacactttgc cactcaggta tcgaagcgaa tgtctacgct taatagacag
     1081 ccgggcaaca cccgtatctt ttacgacgca agccggaggt ccttgtcatt atgctcaacc
     1141 agaaattaaa ccccacgcct tctgaagatc tgactattga tgtcgatctg ttttatgaaa
     1201 cagacccgtg cgagttaaag ctggatgaaa tgatcgaggc ggaaccggag ccggagatga
     1261 tcgaggggct tcccgcctct gacgccctga cccctgccga tcggtatctc gaactgttcg
     1321 agcatgtaca gtcaacaaaa ctgtttccag acagtaaaac gttcccggac tgcgcgccga
     1381 agatggaccc gcttgatatc ctgatccgct accgtaaggt cagacgccac cgtgattttg
     1441 acttacgccg cttcgtcgag aaccatttct ggctaccgga aaccttatcc agcgagtatg
     1501 tctctaaccc cgaaaactcg ctcaaagaac atattgacca gctttggccg atactgacgc
     1561 gcgaaccgca ggatcatatt ccgtggtctt cgctgctggc gctgccgcaa tcctatatcg
     1621 tgccgggagg ccgttttagc gaaacctatt attgggactc ttattttacc atgctgggtc
     1681 tggcggaaag cgggcgcgaa gacttactta aatgtatggc ggataatttc gcctggatga
     1741 ttgaaaacta tggtcatatt cccaacggca accgcaccta ttatctgagc cgctcgcagc
     1801 cgccggtttt cgccctgatg gttgaactgt tcgaagaaga tggcgtgcgc ggcgcgcggc
     1861 gttatctcga ccatctcaaa atggaatacg ccttctggat ggacggcgcc gaatcgctgg
     1921 cgctcaacca ggcttatcgc cacgttgtgc ggatgccgga cggttccctg ctgaaccgct
     1981 actgggacga tcgcgacacg ccgcgcgacg agtcctggct ggaagatgtc gaaaccgcaa
     2041 aacattccgg tcgtccgccc aatgaagtct accgggattt gcgcgccggg gcggcgtccg
     2101 gctgggacta ttcttcacgc tggctacgcg atgcgggccg gcttgccagc atacgtacaa
     2161 ctcagtttat ccctatcgat ttgaacgctt ttctgtataa actggagagc gctatcgcca
     2221 atatttcagc gctgaaaggc gaacgtgaca ccgaggcgct atttcgccag aaagccagcg
     2281 atcgacgcgc cgccgtgaac cattatttgt gggatgatga aaacggctgt tatcgggact
     2341 atgactggcg acgcgaagaa atggcgctct tttccgccgc cagtatcgtg ccgctgtatg
     2401 tcggtatggc gaaccatgag caggccgacc gtctggcaaa tgtagtacgc agccgtctgt
     2461 taacgcccgg cgggattatg gcgaccgaat acgaaaccgg cgaacagtgg gataaaccga
     2521 acggctgggc gccgctgcaa tggatggcga ttcagggctt caaacggtat ggcgacgata
     2581 tgctgggcga tgaaatcgcc cataactggt taaaaacggt gaaccatttt tatcaggagc
     2641 accataaact gatcgagaaa taccatattt ccggcggtac gccccgcgaa ggcggcgggg
     2701 gcgagtatcc gctacaggat gggttcggct ggaccaatgg cgtggtgcgc cgcctgattg
     2761 gcctttacgg agagccttaa cctgctccgg gctcagtgaa tcgcatcata aatggctgac
     2821 tgaattttca gccatttttt attgtctgcg ctgggccggg cctgagcgcg cagctgggcc
     2881 tgctccgtat cgtactgctg gcgcgtcaca acagccggaa cggtgcaaaa cgtttgcaaa
     2941 taggttttat gcatcgcggt cagcggcgcg ccgctcgaca tgtcatgact taacgttgtg
     3001 ataaatcgtc ggcagggttt gacctcatcc atcagcgcgg gataacgcaa caacagttgc
     3061 agcacctcgg tatgtcctgc cgcaaacgcc tgctccgtcc acgcgagctg ccagttcatt
     3121 ccgccctgga ggaacagcgc cgtcacccgc gtatcattgc gctctatcgc cgcccgcatg
     3181 gtaaacgcat cccaggtaat ccccatatga ttgagcgttt cccgcgcgga aggcgcctcg
     3241 cgcggcggtt catcctgcgc cattgcggga gcttgcccgt tatcggagct tggcgatgac
     3301 gaactaaata gccagaacgc gcccgccagt atcgccagcg tcatgacgcc aaccccgccc
     3361 cacaaagcgc cggaaataag ttgctcacgc tcttcaggcg tacgcggagg ccgcttacgc
     3421 ggtggttcta tgctctcgct aatctcatgc ttatctcccc cggcctgccg atctttaagc
     3481 cgcgcggttt cccagaactg gcgcaattca cgttcatccg ccagcagaaa cgaagcggga
     3541 ttcacgcggg tacgtttttc ggcataggcg cgctggatgg gccgaacgat ttgctgatac
     3601 tgaacgttta gcagcataag ctgcgctgag gtgagcggct gcctggcgat aacctcgttt
     3661 cgcgcgaggc ggcaatcatc cagaaacata cgcagagtgg tgcgcgactc ggcgaacagc
     3721 gttaacgctg aggcgtcatt aaaaattctg acgtaatgac gagcaaacaa ttttttatcg
     3781 accaccataa gcgccagttc gctaaacaac atgccctcca gcgcatgttg atcttctccc
     3841 tgttttaacc actggcgcaa acggtccggg ccaaaatgtt gcttgaggta gtgattcagg
     3901 gacgcccgat ccggccatgc gcgcgcaata agcgctttta acgtcagttc tatcgcccga
     3961 agctgacgct gcgcctcaag atgcgcctcc tggtcggggt cttccagctc agtttgatac
     4021 gtcagtagcg gctgctgctg acgtagatgt tccagcgagg tgacaaaacg caacgcggca
     4081 aggagttgat tttcgctcac ctcttgcccg ctgtcatact ggggaacatg ctgctgaaga
     4141 tgacgcagtt gcagcataaa ctggctcaac tgcgcgtcat ttatccgcaa ttttttcgcc
     4201 accgcgcccc aaccgcccag gttaagacgc gcctgctcaa gttgttccat gaaccaccgg
     4261 ggctcttttc cctctgtggt atgaataccc agcagcagca ggatttctat tgatgcctgg
     4321 cggataatcc ccaggctatg ttcaaaaggc gcgcgtgtcg cctgcgaagc gctattcgtc
     4381 attatcttcc ctaaaaagac gatcccgcga cgagatcttc gttttctttt aattatgttt
     4441 tttcatagat ataacagatt tagccacatt tcagtgactt aatcttaatg attgcaaatt
     4501 tataagaaga tcggttacta accaaaaaca tcagtttttc attctgtcaa cgcggcgtga
     4561 cgctgaacgg catagacctt ttccctgcct gcgtttggcc gtctgaccgc tagccacgcg
     4621 tgcagcacac tttataatcg cgctttttat gagaaagatg ccatgccgca catttcatct
     4681 cgctttagct ccgcctgcat cgcgtttatt aaacagtggc agggtctgtc gctggaaaag
     4741 tatcgcgatc ggcagggtaa ctgggtgatt ggttacgggc atatgttgac gccggatgag
     4801 acgctgacgt tcattacgcc cgaccaggcg gaggcattct tgctggatga cctcaatagc
     4861 tgcgatatgc tgctacagaa ttgcttgccg gaacttaacg atcggtttca acgcgaaacg
     4921 cttattgcgc tgatgttcag catcggacat cagcgttttt tatcattaat caatacggat
     4981 gatatttcac agccagaaat aagcggactg cgaatttaac gtcgttaatt cgattcattt
     5041 aacatcatgg cggcctgggt acgatttttt acatccagcc gccggtaaag cgactccaga
     5101 tgcgctttaa ccgtcccggt actaatattt aacgcccgcc caatttgttt atttgattct
     5161 cctgcggcaa gcatctgtaa aatttcccgc tggcgggcgc ttaacgcttt tatatcatgg
     5221 gactccagct ccgttgaatt taaccaatcc cccggtaaaa acatcatccc gcgagcgaca
     5281 gtattgagcg caaggacaaa ggtttcggca tcagaatcgc gtggcaccac gacctgaacg
     5341 ttaaattgca tgacttcatg cagccacttt tgactgccat ccatcgccgt gataataatc
     5401 ttcacctccg gaaattgctg cgcggttctt tgtaacacct cgcggcaaaa ttcagcatcc
     5461 aggccgctat ccagcatgac cagcgcatcc ggcgcgcttt ctattttttg ccagagttct
     5521 tctgcctgac cgacactctg gatacttatt cctggaatgt gctgctgcaa actgattttc
     5581 attccatgaa taaatattga ctgcctgtca aacatgatta cctgcattac ttttctccac
     5641 ctgggtaaga taatagtctc aagatgagga agggtattac ccgtagggta aaataagaag
     5701 tcgccatttg gtataggcca ttttaccgat agtcattggt tgaggaagag aaaggttatg
     5761 aatatttaca gcttcaacat cgggattaca gaattcgcta acattagcgt tttaaagtaa
     5821 ggaatatctt attagtacaa acagacaggg ctaatttgaa tattaattta atgaagagta
     5881 cgcctggcgc gtcacaaagg aaatatctgc ttttcgcctt atgtgttaca aaaaataaag
     5941 tagcacattt tgttaaaaaa tagccaatcc gcctgaaaac cgcgacgatg ggtcaatgac
     6001 aataccgtat atgtacatgc atttctctct cccactacac ccgcggctat cagcgtgttt
     6061 taccgctctc gtcccgttta tcggcttttt ggcgctaaaa tgcctagccg gaaggcgata
     6121 aatccgccgc gcaacgcgat cagacgtatt cgtcacgcga gcaatgattg cgaaagggct
     6181 tattagatgc tagaaaatca ataaaaccag ccgcttcagc gtcactgttt caataaaaac
     6241 aataatagag cctgatgatg gataaaatat atgcaatgaa attgtttgtg cgcgtggcgg
     6301 aacgggaaag tttttcccgc gcagcagaag atatcggcct tcccaaaggc agcgtctcac
     6361 ggcaaataca agcgttagaa catcaactgg gcatccgcct gctccaccgc accacccggc
     6421 gggtacagct tactcaggac gggatggttt actacgaacg ggcaaaagat ctgttgagta
     6481 acctggatga actggagggt cttttccagc ctgatcccgc cagtatcagc ggcaaaatac
     6541 gggtagatat cccgccaggt ctcgcaaaca gccttatcat gccgcgcctg ctcacttttt
     6601 tgcatcagta tcccggcatt gcgctggaac tttgtagtag cgatcgacag gtcgatttac
     6661 tacgggaaga tttcgactgt gtggtgcgca cagagccgct acatgcgcca gggatactga
     6721 cgcgcccgct tggcaaacta agaagggtga actgcgccag cccacaatac ctggcgcgct
     6781 ttggatatcc agaaaacctt gacgacctcg cctcacatgc gatggtgcat tattcattga
     6841 ccccgggagt ctcttcaccg ggttttgcct tcgaaactcc ccacggtatg cagtgggtaa
     6901 aaaccggcgg aatgctaacg gtaaacagta cggagacctg gcatacggcc tgtctggcag
     6961 gattagggat cattcagacg ccgcgcattg ctgtacggga ggcgttacgc gccggagcgc
     7021 tcattgaaat tttaccgcaa tatcgcgccg ctccactgcc ggtgacgctg cattatcccc
     7081 atcgccgtaa tctttcccgc cgggtacacc tgtttatggt atggctgact gaaaccatta
     7141 aagaggccgc agagtagccg cattttcagc atccaccggg gagaagctat actgatatat
     7201 tctattaatg atgaaggact accgacctga tgacgcagga aaatgacgta aaacgcccta
     7261 ttcaggaact ggagcacgac ccgatacaaa aaatagaaac gcagccgcat gacgccccgg
     7321 aaaaaaacga aaaggcaaat caggcgttgc attccgtcac caccctgatg caaaaaatac
     7381 agcgtcaacc gatggtggcc cacctcattc gcgcgaccga acgttttaac gatcgactgg
     7441 gtaatcagtt tggcgcggct atcacctact tttcgtttct gtcgatgatc ccgataatga
     7501 tggtgtcctt tgccgcggca ggttttatcc tcgcctcgca ccctaatcta ctggaagata
     7561 ttttcagcaa gatattgatg aatgtgagcg atcctacgct ggcgtccacg cttaaaaata
     7621 cgattaatac ggcggttcaa cagcgtacca cggtagggct ggtcggactg ggtatcgcgc
     7681 tctattccgg cgttaactgg atgggcaacc tgcgggaagc gattcgcgcc cagtcacggg
     7741 acgtctggga gcgcaagccg caggatcagg agaaaatctg gctcaaatat ctgcgcgatt
     7801 ttatctcgct gattggatta ttaatcgctt taatcattac gctgtccatt acttccatcg
     7861 ccggttccgc ccagcagatg atcatctccg ccttgtatct cgacagcatc gaatggttaa
     7921 aaccggcctg gcatttgatc ggtctggcca tctctatttt tgccaactat ctgcttttct
     7981 tctggatttt ctggcgactg cctcgccatc gtccccgtaa aaaagcgttg attcgcggga
     8041 catttatcgc cgctatcggt tttgaggtga ttaaaatcat tatgacttat acgctgccgt
     8101 cactggtgaa atcgccttcc ggcgcggcgt ttggctccgt actcggtctg atggcattct
     8161 tctacttttt tgcccgcctg acgttattct gcgcggcctg gatagccacc gccgaatata
     8221 aggacgaccc gcgaatgccg ggtaaaacgc aacgctagtc tgcggcttgc tgccgaatgg
     8281 cacgcacggc gtcgtcattc ggcctactgc tgtatggacc caggccaggt atgtaaagcg
     8341 tacccggcgg tacaatcagg cacgtccttc cgcctcatct cattgtttca gcatatcaat
     8401 ccggtaatta acttttattt aaccagaaac cagttttatc caccaatcct aaaattatgt
     8461 gaagcatttc atagacgcaa aatagctggc ttaaacatta tccccttttt gcgctttttt
     8521 tgaccatttt tggcttttgt tacacattga aatataactt ttgctgtgcg taatatggct
     8581 attcgttcgc taaaaataag aaaatagtat gcaagcaacc gccacaacac tcgaccatga
     8641 gcaggaacat gttccggtaa actcacgcaa taaagtcgtt attgcctcgc ttatcggcac
     8701 cgcgattgag ttcttcgact tctatattta cgccaccgca gcggtgatcg tgttccccct
     8761 tatcttcttc ccccagggcg atcccactgc ggcaacgcta caatcgctcg ccaccttcgc
     8821 tatcgcgttt gtggcgcgtc cgatcggctc tgcgctattt ggtcacttcg gcgaccgggt
     8881 aggccgcaaa gtcacgctgg tggcttcgct gctgacgatg gggatctcca cggtcattat
     8941 cggtctgtta ccgggctacg cgacgatagg tattttcgcg ccgctgctgc tggcgctggc
     9001 gcgtttcggt cagggactgg ggctgggcgg cgaatggggc ggcgcagcgt tattagcgac
     9061 ggagaatgcg ccgccgcgca aacgcgcgct gtatggctcc ttcccgcagt tgggcgcgcc
     9121 gatcggcttc ttttttgcca atggcacctt cccgttgctc tcctggctac tgaccgacga
     9181 gcaatttatg agctggggct ggcgcgtgcc gtttatcttc tcggcggtac tggtgattat
     9241 cggcctgtat gtgcgcgtgt cgctgcatga aacgccggtg tttgcgaaag tcgccgcagc
     9301 gaaaaagcag gtaaaaatac cgctgggcac gttgctgacg aagcatgtcc acgtaaccat
     9361 tctcggcacg tttatcatgc tggcgaccta cacgctgttc tatatcatga ccgtctattc
     9421 catgacttac agcactgccg ccgcgccggt ggggcttggc ttgccgcgca atgaaatact
     9481 gtggatgctg atgatggcgg tgattggttt cggcgtgatg gtgcccgtcg ccggcctgct
     9541 ggcggacgca tttggccgtc ggaaaagcat ggtcatcatt accacgctca tcattctctt
     9601 cgcgttgttc gcctttactc cgctgctggg ttcaggcaat ccagcgctgg tattcgtgtt
     9661 cctgttgtta ggtctgagcc tgatggggct gaccttcggc ccaatgggag cgctgctgcc
     9721 ggagctattt ccgacggaag tacgctatac cggcgcatcg ttttcctaca atgtgtcatc
     9781 gattctgggc gcttccgtcg cgccgtatat tgccgcatgg ctgcaaagcc actacgggct
     9841 ggcggcggta ggggtttacc tggcgtcaat ggcggcgctg acgctgattg cactgctgtt
     9901 aacccatgag acgcgtcatc aggcgttgta atagggcgcc ggatggcgtc atccggcgcg
     9961 acgtttcacg ttactgcttc atctgcgtta aaatcgtccg gcactgattg gcttcgccct
    10021 cagagggcga aatgagcgct aatagcgcgg cggcgggcgt taccaacgtc gccagcgctg
    10081 ccgcaaccgc gccgcgcgca atcagcgggc cgggcttgac gcccgcctgc ggatttttaa
    10141 atgtcccgcg cacgtaaagc ggcgatcgca gcgtaataat acgaatcccc ttactttccg
    10201 gatcaatggt taaatcgagc tgttcagagg cgaagctcgc cgtaccggtc acgttaatca
    10261 acgcattttc tgtatcaaaa gcaaaaattt gcggtcgcgc cacgccgttc gcaatattga
    10321 gattcgccgc cgcgcagtta acccgcactt cgtcatcgcc aaaaatctgc ccgataatat
    10381 agttgccgac gttcagcccc acgatttcca tcaggttgcg gctaatcaat ccatcattca
    10441 tcaataattt gagattgccg ttactgttgc caagcagcgc ggcgaccgaa ttgcccgtgc
    10501 cgcgaatatc cgcatcgccg ttcagctcgc ccagcgtttt ctgcatcagc tccacatccg
    10561 gcatcagttc tttaagcttc agccgacgcg cctgtatatc cgcccgcccc tgcatcggct
    10621 ttttatcccc ttccagatgg atgttggaga caatactgcc gcctgccaga ccaaacttca
    10681 gcggctgtag acgtaagtcg gcgtttttca ggatgatatg ggtcgaaaga tcgctaatcg
    10741 gtagactgcc gccatgctca atacgccggc ctttaaaccg gacatcggcg tccatgacgt
    10801 cccatttgtc ggtttcaaag cgatcgtaag gcaacacttt atccgccggc tgaacattct
    10861 tctcgccttt gcgctgttca gaccgtttcg actgctcagc gtctttcccg gaatccacgc
    10921 caatcagcgg cccaagatcg gccaggcgta actggcgcga ttcgacatcg ccttccagtt
    10981 tggggctcgg tttaccggtg gtataagtga aggtgccgtg gatatcactg tcgccaatgc
    11041 gcccgttaaa accgcgataa ttaaataccg atgacttttc ggcgtcaatt ttcgctacca
    11101 atcgcccatc ggtctcaaac ggcggcgtat ccggcagcag cacgccggtt aaatcatata
    11161 aatcgcccag tgaatcgcca gagaatttaa gccgcagatc gacgccgccc attttcatcg
    11221 gctcgttcac cacgccgcta aaagccaccc gcgtattgcc agagcggaaa tcggcctgca
    11281 caggaaaagg cgtactttcg ctacgtagcg ccagcatacc gcctattttg cccgtaccgg
    11341 tcaacggttc cccgttataa cgcccctgcg ccttcaggcc gaagacatag tcgcccacgg
    11401 tggatttgtc tgctttgcct ttcgttcccg tcacttcgct gaacggcaac ggtttgccta
    11461 acggatcgac cagaatagtg atatccgctt tactgacctt atcatcgatc gcgattcgcc
    11521 cctggtcgaa gagaatatta tccagccgga aggaccaggc ggaaggttta gcattggggt
    11581 ccgtattctt gtcttgcgcg aggttaaagg tccagttatt ggttttctcg gacagacgaa
    11641 taagacgcgc gtcgggtttc accagtttga tccacggcag ccagacggtt ttggtcagga
    11701 gcgccagcgg ggcaagcgtc gcctcaacgc gtggcagatg caccatcgtg acttccggaa
    11761 tatccggcgg attgccgaga atgacgtctt ccgcgtgaac atgcggccac ggtacccagc
    11821 ttcgccagcc ggactcctgt ttttggcgtt cccacaccac gcctaaatcg ccgcgaatag
    11881 cgaaaggccg gttcaattcg gtagagactt tctggttgat ggtcggtttg aggcggttcc
    11941 agtcaaatgt tgcgatcaac aaaatcacta tggcgatcaa caacaagaaa gtccctgtga
    12001 tggcggcggt tattttgcct gctttagtca tgtgttattt cctcacttct tcccttgcct
    12061 gtcctaaaga tagttcagcc agacgaaaaa ggaggatgac cgcacctcgt aataccacgt
    12121 attacgggaa cagtctggcg ttacagggtc agaatcacct cttcgagcga tatcagcggc
    12181 acgggtcgag aaagaaaata gccctgggcg gcaaaggcgg gcgaacgctg cacatcacgc
    12241 cactcttcca gagtctccac gccttcgaca ataacgccgc ggcagtagcg gttcatcagt
    12301 tgcagcagca gaatgaacag gttgcgcccc tccggggact ggcgcagcat gacgaacagc
    12361 tcgcgcgcca ctttaatgta gtcataacgc acttcgctca gcgctgaaaa attggccata
    12421 ccagtaccaa aatcatccag ccacagcggg acgaactcac acatcgaggc gaaagaggag
    12481 tctttcggca aacgaatatg ttccaccagt tcaaaacgca gccagggtaa gcgctccatc
    12541 gctgccagaa tgtccggctg ttgtcgcatg gcaatcagcg tagggccgtc gacattgact
    12601 gatgccaata agcgatggcg agtgaaaaaa tccgcttttt gttcaagctg atgaagttgt
    12661 tcttttacta cgtcaatgcg gtgtcgaacc gctaattccg cgaaataacg atccggggca
    12721 atacgtctgg aagggttatc aggatgggtg acggcagtga gaagttcaac cgtcatcaga
    12781 cggccatccg tctggtatat cggctggtaa gtataggcac gctcgcattg cagccaatag
    12841 cgccgttcct gcaaattctc tatacctgca tcaggaacgc gtagctgctg gataacctgc
    12901 tttatcatct cagttgtcct gttaatggga gtgtgacagt ccggactcgt caaaggttat
    12961 cggcgttcag gcagagaact ttaccctcgg tccctggcaa aataaaaaca gaccacgaaa
    13021 cttgtcaaaa atacgcactt gctcaaaaaa ataatggacc gatgttttaa tattattgac
    13081 cgctaaacat ccacagcgca cactaacgct aatttttaca gatcaggttc acgactatgt
    13141 ctaaaaagat tgccgtgatt ggcgaatgca tgattgagct gtcgcagaaa ggcgctgatg
    13201 ttcagcgcgg cttcggcggc gacacgctga atacctccgt ttatattgcc cgtcaggtcg
    13261 attctgccgc tctggccgtt cactatgtaa cggcgctggg taccgacagt ttcagccaac
    13321 agatgctgga ggcgtggcag catgaaaatg tggatacctc gctaacgcag cggatggaaa
    13381 atcgcctgcc aggcctctat tacatcgaaa ccgatgacac tggcgagcgt accttctact
    13441 actggcgtaa cgaagcggca gcgaaattct ggctggagag cgagcagtca gcggctatct
    13501 gcgagacgct ggcgaccttc gattatctct acctgagcgg cattagcctc gcgattttaa
    13561 gcccgaccag ccgtgataag ctgctgtctt tattgcgtga atgccgggcc aacggcggga
    13621 aagtcatttt tgataataac tatcgcccgc gtttatggac aagtcgcgaa gaaacgcagc
    13681 aggtctatca aaagatgctg gaatgtactg atatcgcctt cctgacactg gacgatgaag
    13741 acgcgctatg gggtaagcaa ccggtggaag aggtcattgc tcgcacccat gcggcaggcg
    13801 tacaggaagt ggtggtaaaa cgcggggcgg actcttgcct ggtctcgatt cagggcgagg
    13861 cgctcattga cgttccggca gtaaaactgc cgaaagagaa agtgatagac accactgccg
    13921 caggcgactc cttcagcgcc ggttatctgg ccgttcgttt gacgggcggc agcgcgacgg
    13981 atgccgcgaa gcgcggacac ctgacggcca gcacggtgat tcagtaccgt ggggccatta
    14041 ttccgcacga cgcgatgccg cagtaagtca ttcgttcttg cccggtggcg ctgcgcttac
    14101 cgggccgaca ggcggccgct tactgtgccg ccggtgtttc cgtcacttcc ggatgcgcct
    14161 catctgcttc aacagcggcg gcagttgccg gaaccatgat ttcatcccac gtcgccttta
    14221 acgccttcat attaaattcc ggctcgcctt gcggttgcag caaaattaat gccatctcct
    14281 gcgatagctg ctgacgtaga ttctgattga gcatatcgac ggtcaggctg ttgaggaaat
    14341 tctgacgcag cttctgatac tgctccggcg cgatatccac cacctgattc tgcagcgagc
    14401 gcatacgctg tccagtcaaa atgtcagtat cggtacgcgc gtaggtcgcg aatagctttt
    14461 gcaattcgag atttttctgc gccaccagcg cagtaaactc ctcttccgac aaacctttat
    14521 cgcgtacttt cgccagttca ttcgccacca ggctcaaatt ggtattgagc ttatcattag
    14581 gtgattcaat gttgatggcg cactgcgcgc gcaggaacag aacccggcag tcaaacccca
    14641 gaccaatatc tttcgcgtta tttttagtaa gctcttgctg gatatgccag aacagcgctt
    14701 cgcgcgccag atccgcctgc cagtagcgca acagcgccgc cgactcgcga atcggttgcc
    14761 acggcgtatc ccacataatg gagagacgat cctggcgcac cgcatcggtc ataatgctca
    14821 ctgattccgc ccgcagcggc gaaagcgtcg gcaccggggc gggcgtttcg cgtttacctt
    14881 tcagcgtacc gaacgtttta ttgatctgct cggcgacgga gcgcgcatca atgttgccga
    14941 caacaatcag cgtcatggca tccggggtgt accatttttc atagaaagcc tgaattttgg
    15001 ctgcgtctac cggctgcttt aacggttccg cgggatcgtg ccccaataac gccgatcctt
    15061 tcagccgata acgccaccag ccctctttag tatctgctgg ccacgtcgca accatatctt
    15121 cgctgcttaa cgcatgattc accgtctctg gcgtaatggt taatttaccg gagacgttag
    15181 ccagataggt cagcgcttct ttcagcagat cgttacggtt attgggtaaa ctgaggctat
    15241 agagcgtgga atcataagaa acaataacgg gcggcatggg acgtttcgga tcaaatcctt
    15301 gctgccataa agaacgtgcc tgtgcggcat ccagaccacc gctttgcgtc agcgcgatac
    15361 ggggaatcgc atggctaaac ccgctctgtt gcgtactttc ggtgagcgaa ccggtattaa
    15421 cctgtagacg aacttcaata cgatcgctgg ggcgctgagg cgtagccaac acttgccact
    15481 gtaacccatt agccagcgtc ccctgttgcc atgccggatc gggctggagc gcatctgcct
    15541 gcacatagcc ggcagaggcc aacatcaaca gactgcccgc taagagtcga atttttgtgc
    15601 cctgcatgtg aacccctgat caacaatcct ggtaataaaa agacagcccc ggcagggatg
    15661 cctgaatatg acgtaaaaac acttcgtgtt agaccgcgag aacctaaaaa tgtcacggaa
    15721 gaagtgaaat aatccctaag catcatgctg tatgctttgg gcgcaggggt caattatgcg
    15781 caaacacccg cagtcctgga agggactacg ggcataagtg gcgagattag gaggaaattt
    15841 cgtgcgtttt gccatccggc gcacgattat taagcacatc gtccagcttt tggtgatcta
    15901 actctttcac ccatttggca accaccaccg tcgccacgcc gttacccacc aggttagtca
    15961 gcgcgcgcgc ttcggacata aagcggtcga taccgaggat taacgccagt cccgccaccg
    16021 gcaaatgacc tacggcggag atagtggccg ccagcacgat aaagccgctt ccggtcacgc
    16081 ccgcggcgcc ttttgacgat agcagcagca cgaccagcaa cgtgatctgg tggaagatat
    16141 ccatatggct gttggtcgcc tgggcgataa acaccgccgc catcgtcagg tagatagagg
    16201 tgccatcaag gttgaacgaa taccccgtcg ggatcaccag ccccaccacc gatttacggc
    16261 accccagttt ttccatctta tcgagcatac gcggcaacgc tgactcggaa gaggaggtgc
    16321 cgagcacaat gagtaattct tcccggatat agcgaataaa tttaaaaatg ctaaagcccg
    16381 ttacccgtgc aatcgtcccc agcaccacca ccacgaagag aatacaggtg atatagaagc
    16441 agataatgag ctgccccagt tgcaccagag aaccgacgcc gtatttaccg atggtgaagg
    16501 ccatcgcgcc gaatgcgcca atcggcgcca ggcgcatgat catattgatg atgccgaaaa
    16561 tgacctgcga aaaactctca atcacattga aaatgagctg gcctttgctg cccaaacggt
    16621 gcagcgcaaa accaaacaac accgcaaaca gtaagacctg cagaatgttg ccgctggcaa
    16681 acgcgccgat cacgctgccc ggtatgacat ccatcaggaa ggcaataatg ccctgctcct
    16741 tggcttgtgc ggcataaacg gccaccgcct gcgcatccag cgttgccgga tcgacgttca
    16801 tcccggcgcc aggttgcaca acgttgacga tgataagacc gttaatcagc gcaatcgtac
    16861 tgacaatttc aaagtaaagc agcgcgaccg cgccggtacg ccccaccgct ttcatgcttt
    16921 ccatgcctgc gatgcccgtc acgacagtac agaaaatgac aggagcgatg atcatcttaa
    16981 tgagcttaac gaacgcgtcg ccaagcggtt tcatttgtgc gcccagttca ggatagtaat
    17041 ggccaaggag aataccaatg gcgattgctg tcaggacctg aaaataaaga cttttgaaca
    17101 gagaggtttt catagggtgt ccttgaagta aaaaccacag gtcttgtaag gttatgagta
    17161 acctgcggcc ttaaaataac acccacacaa catgacagaa atgcgccagg atcataattg
    17221 aaacaaaaat gttaaaaagt ttgagctgac tcgcacaagc gcgacctttt ttaacttttg
    17281 taatcaggat tttcgtgcga cagataccgt tcttcaaaga tatccgcggg aacgggccga
    17341 gcaaacagga agccttgcgc gacgttgact cccgcctgtt ccagccacgc gcgttgcgcc
    17401 tcgtcctcca cgccctcggc aatcaattgt aaattaagac tgcgggccat caggataatc
    17461 gccgtcacca tactgtgatc atccggtaac ccatcgacaa acattttatc aattttaagg
    17521 atatcgaccg gtagcgactt catatgctgt aactggcgca gccccgcgta acccatgcca
    17581 aaatcatcca gtgcgatacg cacgccagca ttacgtaacg gacgtaagat agcgacggca
    17641 gcgtgcggat cgtcgatacg gcggctttca gtgacctcaa gaatcagcgt acccggttga
    17701 atacgatagc ggtttaacaa ttccagcaga tccgacacca tgccagggtg catgagctgt
    17761 aacgcggaaa gattgacgga gagcggcaat gtcacgccgc gctcctgcca ggcggcaagc
    17821 tggcggcagg actcttccag cacccaatgg cccaccgtga ccatcaggcc gcaggattca
    17881 atgcgctcaa tcagcccctc cggcaattcc cagctaccgt ccggctgctg catacgtaac
    17941 aaggcttcgg cgcttaatac gttgccgctg cgcatctcga cctgcggctg cagccaaatg
    18001 gcaaactgat ggttatccag cgcggtaagg atatcgctct cttcggtaag gcgctgttga
    18061 gcggcctcca tctgcgccgg gtcaaagaac tggatctgat ttttaccttt tcggcgcgcg
    18121 gtaaacgcgg cggagacggc gcgaccatag agcgcttcgg cggtcagatc gccataatac
    18181 atcgcaatgc caatactgca gcttgggcgc agttgaatac cctggatggg cagtcgttca
    18241 ttaatgatag tgagtatttg ctgacctaat gtgatggcgt gccacggctc tttgacgccg
    18301 tgggcgataa tggcaaagtc atacccgctg acctgcgtaa gcaccatgcg cggcgccagc
    18361 accgacttca gcttctcaac cagcgtcagt aatagaatct cccgctgcgt ttcttgcagc
    18421 acgcctgccg tgtcacgcaa cgtttcgcac gtcacgatga taagcgcggt ggtctgttgg
    18481 cgggtgataa cctgttccag cagcgccatt aaaaaggctt tattgggcaa ctcggaaacc
    18541 ggaaaacgca tcgcgttgtc cgtttgctcc tcgcgttgac gctgcataag ctgctggttg
    18601 aggttatagc tgcgcaccag catcccaatt tcatcatcct gatgcagacg cggcaacgcc
    18661 agctgatgtc cgatcagctc ctgctgcgga atgtcgttca gctcgcgggc gattttgcgc
    18721 agcggatgca caatcaggcg gtttacgcac caggcgatgg ccaccgtcag gatcagcgat
    18781 aaaagtaagt aaatggtcac taacgtagag agcgcgctca tgacgaactt gtacatacgg
    18841 tacgaatccg cctgcaatac aaggtaggcc agcggttgcg gattggcggg acgctccagc
    18901 gaataaaccg gcaaagaaat ttgtaccggc agttcgaaga gacgcgtcac cataaccggg
    18961 acggggcgtt caggaatgaa gcgcttacgc aacgcctgga actgattcgg caataccaca
    19021 tcggcgcgac tcaccacgcc cgcaggttta atactttcca gaatggtttc cgcgccgggg
    19081 agatccgctt ttaaaatcgc ggaagaaaga ggttcccgaa cagagcgcgc gatgctttcc
    19141 agttgcgtag ccgtgttgta gcggttctgc tgtaccagat ggaacaacaa aacggtgcaa
    19201 aagacaaaaa caaacaccat gacaacggcc gcaaccattg ccatctgttt aattgttaac
    19261 gagcggctga cgcgcaaatt gactctccct ggatatcccg gactgccgcc tgagtatacc
    19321 cgattgcagc ggcattaaga gaggctgtat ctgaaaagga cttttctgaa taacggttaa
    19381 tgatagcgtc tgatggcgct gcgcttctca ggcctacgac gcctgtcaat acgtaggcct
    19441 gacgcaatga ttaccagtca gcgtaaggca ccagaggctg cggcggtaaa tccatatccc
    19501 cctgccagcc tgccgcggaa taacggacat acagcagcag atgactgggg gtataatctt
    19561 tcgcctgcta aatatcgaca gccgtaccca caaaccagtt ggcagtgacc cggcgttcaa
    19621 tgagcgcccg cgcggtatag ccaaatccct gactgctgcc gccgccgttg gtctggtcac
    19681 gcgcatcctc ctgataatcc gccggaatca aattcatcag cggataacgc ggcatggtac
    19741 ggttgccggg agtgcgacca ggataccgag ccgcctaact cccacgacca gttttccgta
    19801 cgctgccgcc acatcaccgg caccgcaaac gacaggtatt cctgcgggct ataataaccg
    19861 ccctgaccca gtgaataacc gctcagatct ttgtcgtaat gccagatcat gttattcagc
    19921 ccgacggtaa cgcggcggtt attctcgtta atcaccttat agtaataacc ggtcatccag
    19981 cgcacgcgcc agttatcttc cacattttta ccgctcaact ggtcgccgct gagcgacgcc
    20041 cagacaccgt ttgcttcgcc tttatcatag ctgagactga cgccgccgcc gttggcccgc
    20101 acgccgcccc atttggtgcc ggtattgctg ctggcgtcct tttgcccgcc aaacgccagc
    20161 agcgagctgg agatcgggcg acgatgcgcg ttcagggtat aacccaacgg cccgatatcg
    20221 tcgctatagc tgacgccgcc gaccacatca acgacattaa agcccatcgg cgtcgtgccg
    20281 atatcccagc gccaggtctc attctgccag ccgaccgcca cgctcgcgcc cgtatcggcc
    20341 tggctacgat gtccgctgca tttctccagc gtacaggtac cccagttatt atcgtatttc
    20401 ccatctgcat ccgtagagaa gcgaccaaca tccatattca ccatatcagt acgaaagaac
    20461 gcccgtccgt ccgaccaggg cgcatccacc tgaagcatcg tggtatgcgc cttcagatcg
    20521 gagtagccgc cagtcccgct cgacccccaa taatcgtgcg ccaacgtgac attgagatcc
    20581 tgctgacggt acaactccgc cgcatcgcta cgcacgccgc gttttagcca gtcatctttt
    20641 tcatcattgc gcgtcaggcg ggtaaaggta tcgttatcct gggggcgaac cggcgtaatc
    20701 gccgcggcga ccattgcctc tttgtaggtc tccagcgccc gctgcggctc gcccgtttgc
    20761 gcctgaaaag cggcggcgtc acgcaatacc atcgcgcttt ccattgatgg cggctgtgct
    20821 tttgcctgcg gcgtaatgcg gttaaagatc cgcgccgccg ccgtgatatc gccaagctgg
    20881 agctgcgcca gcgcgacgcg gcgctgcatg ttaatagagg tgatttgcga cgcaggcagc
    20941 gccgccagtt gagcgcgcgc cgcagcgtta tcgccctgtg cgatgtcgat ttccacccgc
    21001 cccagcatgg catcgacatt acccggttcc cgcgccagaa cggcgtcata agcggcgcgg
    21061 gccgccgcat tatcgccacg ctgctgcgcc cagtccgcca acgttaacgc aatgcgcgta
    21121 gagggcggct gctgacgtaa caacgcttcc gcttcgcgtt ctttgccgct atcgcgcaag
    21181 cggttagcgc tttccagcac ctggttactt tacaatcggc ccgccagttc ctgaatattg
    21241 ctgttccact ggctggtcgg cagggtattg agatgcgcca gcgccgcccg gccccgatcg
    21301 ctgccggaaa gataaagccc ataagcatag acctgttccg gatcgtttgg cttctgctgc
    21361 gccagagagc gcatttgcgc atcggcctgg gcgtgctgtc cggcctgcca cagatcgcgt
    21421 gacagtcgat acgttaccca cacgctcccc ggatctaatg ccagccggcg gcggtgcagt
    21481 tctgcggcct gcgcccattt gccctcgctt tccagcgttt ccgcctgctg cgccagacgg
    21541 tcattttcca gactgcgttc gatatcgtcg atactgcgcc gctggctggc ggaaagagaa
    21601 gcgataaacg cggcggcttt ttgcggcgac tgctaacgat aaagattcgc cagcccgcgt
    21661 acagcattgg tattaccgct gtccatacgc agcgtctgct gataataacg ttcggcggcg
    21721 gcattatctt tgcgcgccat cgccacatcc cccagcccca gcaccgcgta gctgtcggtg
    21781 ttatccactg ctcgcgcctg ctgatagaaa cgctccgcct gagccagatt attcgctttt
    21841 aaggccgcgt cgccctgctg aattaacagc cagtagcgat tgaccttcag caggctctcc
    21901 cacttatcgc ggctgctgct gtgcggcgcc atcgccagcg ccttttcaaa ctgcgcgacg
    21961 gcgcgggcgc gatcgccacg ctgtgagtat gcctgcccca gcgcgccgac cgcctcgctg
    22021 tcgtcctgcc gggcgctcac cgcctgctgc gattgcgcaa tagcgttgcc gccttctccg
    22081 gcattaaccg ccgcgatgcc ctgcgagcgc gcgcgaaacg ccggatcggc taactgtttt
    22141 tgctgctcgc taagctgggc gcgggcggca gacacgctat cgccttcgct aaactgcgtc
    22201 agatagtctt gcaacgcttt tacgctggcg tcgctaaccg ggagatcttt tatctgctgg
    22261 taccagatgg cggaggccgc gctgcgtccc gtactggatt tcgccatctg ttttagcacc
    22321 gcgaatccct catcgcgccg cccgctggcg aacaacagtt gcgccagcgc attttgcaga
    22381 gcgttattac ccggactgac ggcattgatt ttctgtagct ggttaatcgc ttcgtgacgg
    22441 cgggcgggca atttcgccac ggtcgtccag tattcgaccg ccagttcgcc ctccggcgga
    22501 taacctttaa acagcttgtc gtagctggcg atcgcttgtt cagtatgacc ggtcgtcgcc
    22561 agtaaacgcg cctcctgcaa agactggcgt ccttgcggcg tggagagcag catcgcggtg
    22621 cgggaagatt gatacgccgt cgactccggc gccagttgcg ccagccgatc aagtagcttc
    22681 tgcgccccgt cgctatcccc ctggcgcaac agatagcgga aacgggcggc gataacctgt
    22741 ggatcattgg ggtcgatcag ctccaggcga tagagcgact gacggactaa gtcctcacgg
    22801 tgcgtggcct cgcccagccg cacctgctcc agcaactgtt gctgcgcgga ggtcgctgcg
    22861 ccggcaagcg gtgttagcgc cataccaagc gataacccca acaatgcccg agaaacgccc
    22921 cttttgccag gtaaggcatt tcgaccgcca gccagcaaaa aagcgtgcat gagacttaac
    22981 gtgaacttac gcattcctgg ccccagtcag gtaataattc acctttgacg gtgaagcgaa
    23041 aacggtgctg atcccagcct tgtccaaaga gagtcagcac atagttgtaa taggcatcgc
    23101 tgccaggaaa atggtctgcg acccgctgtc gctgcacggc ctgggcgccg cgattttgca
    23161 ggaaaggcag taaagcggcg gaaaacccga ccggccccgt cccttgcgca ttcccgctga
    23221 cgacatccac tttctccggt ggaacgccgt ttttcatcgt taacgtcgcc atcggtttaa
    23281 atcgcgccag taaacgcgct ttttgcggat cgccatcatg catcattccc gtccataaat
    23341 agacgcgaat cgcatcgtag ctactgatca gcgtcttttc cgctttcaac tgccagcctt
    23401 gctttcataa cgcacccagt ccggcgagaa acctttcggc gaggtttcca acaaaagccg
    23461 caaattggtt tcccgtagcg tcgaccacgg cgcgccaaaa cggctaaagt attgcgccaa
    23521 ctgcggcggc agatagcttg ggttaaaacg ccagctattc gcctcggcaa agccgatttt
    23581 gccaggtagc agcattgagc ccagccccgg cacattcacg acctcttcgc gggcgatgcg
    23641 ttttagcaac gccgtgccca cctcggtata acgcgtctct ttccacaggc gaccggcctc
    23701 cagcagcgac catgccatcc agatatcgcc gtcggacgcg gagttgctgt ccagcaccga
    23761 ccaggtgtcg ggatcttttt gtccccacag ccaggcgggc agatgttcac gcagcgatcc
    23821 ctgcgccaga ttgttttgcg tccagttaaa cagttgcgcg aacgccggtc gatcgttcgc
    23881 cgccagggca aagaacatgg cgtagctctg cccttcggag gtggtaattt ttcgcgcatc
    23941 gcccggatcg ataacgcgtc cctgctggct aatgtaatct ttcttgaact gttcccacgc
    24001 aggccagcta cacgctgcct gcgcatttat tgccgtcagc atgacgatca tcgttatcca
    24061 tccgcgcagc atagtcatca tgcgttactc atggtcaggg tcgagacgac ggcgactgag
    24121 aatacgtagc agacgccaca atacccacgc cagtaatacc acactgaggg ccgccagtac
    24181 cgccagcagc accgggtgat tcgccagcgc ataccacagc cgctcaaacc acggcagatg
    24241 tccgacgtaa tagatatcgc caacgcgcag actgtgaacg ccggactcgc ggatcaccgc
    24301 cacggaacca aacatcgcgg cgcgtttacc gctgtcgttc acggcgtcgt tcagtagctg
    24361 gtaaccgcgc gggctgtcag ccagcagagc aatcacgctg cgctgatcat taaacggcga
    24421 ctggaagccc accaccgccg ccatcgggcc gctggcggtg acggtggact gcgcatccgc
    24481 cgcgcgatcg gcctcatccg gcataatcga cgggaaagcg gtctgccgca tcggggtttt
    24541 tacccagctt tgtgtcgcct gcaccaacag atcgatacgc ttatcgtctt ttagcttgcc
    24601 cggaatagcg ccaataatca gcagatcggc gtctttgtcg gctatctgag cgctatcatc
    24661 ggtgattgtc agattaattg ccgggaaacc ggtctgcccg ccaatggcgc cgaccgtatt
    24721 cagcagcgtt tccatttgcg cttcggttgg ggtcttcggc atcaccgcca gcgtgtcaga
    24781 caggtcggcc atccggctga acgggaaacc cgcattggcg aacgcgcgta aatccggcat
    24841 cgcgataaag tggtaatatt tcgaaaaatc gatagtggag tcatccccta tcaccacatg
    24901 attcggtact ggctggaaag taatacagtt gtccaccgac ccgcccggca tcggattcat
    24961 gtagcggaaa tcaaaacgta gttggttcat cgcccccagt ttgagcgccg gaatagacac
    25021 atccgtttta ccatccagca gtccctgaag taccggcagg cgcaacagga gtcgattagt
    25081 ttcctgcgtg ctgttaaggc taaaggcttg caagaactgg ttattcagac tgatatccag
    25141 ccgcgaactg tctttggtcg gcggcgaggt ataacgatag ttgagatcca tatcaatacc
    25201 gttgctacgc agcaaataga ggtccggcgg cagattcaaa gaaacgttga tgggcgccgg
    25261 ctccagccca ctcgactgga gctgctcttc ataggttttc agctcgccaa aagtgaccgg
    25321 gcgatcggta cgcacccagt tcggcgcatc atacggtttg cgcgccagca gcggttttac
    25381 atcgttgacc accacgctgg aaccacggaa gagaatattc ccttgcgcga taccttttgc
    25441 cgcctgcaac aggtctttat catctcgacc aaacacgacc agcaacttca catacggatt
    25501 atccggatgg ttcatcatct cgataaccgg cgcgttaacc gcaggatgat cgcgcaggaa
    25561 atcggggcgt cgatcgttgg tggcgaacac gatcgcattg cgatccggca ggtgattata
    25621 caacaccggg aagcgctgac cgcgccagcc cgcccgcgag ccaaaccagg acgcgacaat
    25681 agaagccgcc tgctgctgcg ccagatccgg catgtcagca aacactatcg gcaacgtcac
    25741 cggacggtta tcccgcggat cgaaaaacgg caccgggaag tgggacagat cgttattcac
    25801 cgccagcatg ttataggtca gatccagggc gctatttcgc ccgatgtcta accacagagt
    25861 actgctggcc gggttttcac acacgtcgcg atagtggccg acaaactcca gccgcacccg
    25921 gttaaagtcg gtgataaata gcggattgat aggtacctgc gccagcgtct ttttccccaa
    25981 ctgctctttt gtcaccggca gtacgcccat cagttcatca ttgagataaa ccttgagctg
    26041 cgactgaacc ggcaggagcg acggcgaggg cgtatattcc agattcaaca ccgctttcga
    26101 cgccacttca tcgctgcgca taccaaattc aatgccgccg ttagggttaa cgccacgcag
    26161 cgccatactg cccggcggcg gcgcgatttg cgcaaaggtc agcttgacct cgcgcgaagg
    26221 cgcggtctgc gccacgacgg gcgcctcagt tacgggcgac tgcgcaggct cggtgggttc
    26281 agcattgatc aatggcggca tcgcaggcgc cgccgccgtc atgaaagcag gaaacgcgct
    26341 taatcctatt accgccgcac acatccagga caattttctt ttcatcgcat tatcatcatt
    26401 gttgagcctg agccataacc cgatccgacg gctgtatcgc cgcttgccgc tccgggcgac
    26461 gcggaataaa cgatacaatc caggcaatta acgccgtcaa cgatcggaaa attactttta
    26521 ctgaaggcgg cgcgaactcc gcgaggtggc gatatccgcg gaagcccagc ttcagaatat
    26581 ccagcaagct ttccagcggt ttatcttccg ggaagctatc ttgccaaagc gcccacgtat
    26641 cggcgcgagc gaaggtacac tgcacaaaat caatatgttg tttggtggtg agcggcatca
    26701 gttgcagccc gacctcattg cccgttacgc gcactacctg cgttggaaag acatattcct
    26761 gctgcccgcg tttaagcaac agattcactt tctgcccttc cagcacctgc gcctgaccgt
    26821 tgatcttgat gcctaacccg ccgtcggaga agtcatgtac ggtacaggag aacaaatgtc
    26881 catcttcgcg ggcgatggcc cccggcatgg caatctcgac ccgatgcgcg cgcctgacct
    26941 gtttactctc taccgaaacc gcaaccgcgc cgccgagaat gaccaggtta tagaagaccc
    27001 acaccaggct aacgatgacg gtcagcgttt cattttccgg cccataatag tatcgccata
    27061 cgcccgccgc cacgccgagc aggttaagca agacaaggaa gatatacgga cgcgagatta
    27121 cccagtcgac gtacttctct tccaccagtc cgcctttcgc cgtgacgtta aatttccctt
    27181 tgtgcggatt gatcaacgcg accagagtcg gtggtgcgat ataccatgcc agtaccgttt
    27241 catagatttc actccagaaa gagtgacgat acttgccctg aatcttcgag ttagtcaggc
    27301 tggcgtggac catgtgcggt atcacaaata gcgcaatcat caacgcaggc gcataaatga
    27361 tataggcgtg cagcagcaga aaagccagcg gcgcggtcag aaagatcagg cgcggaatgc
    27421 cggacaagaa atggaacatc gcgttgaggt agcacagccg ctgcgccagt tttaagcctt
    27481 taccaaacag agggttatcg aggcggaaaa tttgcaccat gccccgcgcc caacgaatac
    27541 gctgcccgat atgcgccgac aggctttccg tcgccagccc cgccgactgc ggaatgcgca
    27601 tatacgctga ggtataacct cgccggtgca gccggagcga agtatgcgca tcttccgtca
    27661 ccgtctcaac ggcgataccg ccaatctcat ccagcggctt acggcgaatc accgcgcacg
    27721 atccgcaaaa gaaagtggca tcccacatat cgttaccgtc ctgcaccagt ccgtaaaaca
    27781 gcgtgccttc gttaggcgtt ttacgaaaac gtcccaggtt gcgctcaaac gggtccgggg
    27841 agaagaaatg atgcggcgtc tgcatcatcg ccagctgttt ctctttcagg aaccagccca
    27901 ttgtcatttg cagaaacgag cgcgtcggta catggtcgca atcgaagatc gccacaaact
    27961 cgcctttcgc gtgttttaac gcattgttga tgttgccggc tttggcgtgt tcatgcgtag
    28021 cgcgggcaat gtaatgcacg ccaacatgcc gggcaaactg acgaaatgat tcgcgcccgc
    28081 cgtcatcaag gatccagata ttcagcttgt ccttcggcca gtcaatgcca agcgaagcgt
    28141 aaatggtatt tttgaccaca ttaaggtctt cgttataggt cggtacaaaa atatccaccg
    28201 tcggccactg cgacatctct ttcggcaacg gcaccggttg acgatttaac ggccacacca
    28261 cctggaagta ccccagcacc agcacaatcc aggcgtaggt ttccgcaaac agcagaatca
    28321 gtccgcacac cagactgacc gggtcgtccc aatttagcgt cgaggtatag cgccaccaga
    28381 tataacgaca ggagaccgtt agcgacagca cgatgagcat cagcgcggaa aagcgtcccg
    28441 gcatacgtcg taccaacagc gcaacgcccc acagcaacag cagaaagata aattgcgata
    28501 gcgggttaaa tggctgcgta atacagatca gcgccagtat cagtgaaaag gtcacgataa
    28561 cgcccagaat aaaacgccgg gcgccgttgc taagatgtcc cagctctttt tccttttcca
    28621 ggtgcgttgt cttttggcgc acccgttccg gtaaggtatc catccattga tggtaacgtc
    28681 cacgaacgtc cttcaggcgc gcaaatgacc gccagcgcgg ttcatgacgt tctttagtcg
    28741 acgagatcat caccagccag agggtctgaa tgaggtaacg ggccgggtcc agcgggcgcg
    28801 ggcgggcggc gttaatatgc ggataaagcg ctttatgccc gtcgcgaata cgctgccagc
    28861 gcggatgctc aagcggaaac actatccacg ccagaatcgt ccacaggcag ccgagcgctg
    28921 cgctaaacgg cgacgcgccg tggcggcggt aaccctgata gcgctcgctc aagcgcgcgc
    28981 taaccggcgg gataagcagc caccgggaaa gggcgctcat cgcaggctcc cggcagacgt
    29041 tttgtcgccc gcatcgtgca gcaggcacca gttcgccagc gttaacacct cttcggcggc
    29101 taacgaatcg ctgcgatact cgcctaacgg ctgtttcgac gccatgcact ccgccatcgc
    29161 ttcatcgcga tggatcacaa taggcagcaa ccggcgctgg ctttgcagcc agacctggta
    29221 cagatcgtcc tgtaactgac tgccaatgcg taagtcattg atcagaatat gcgctccggc
    29281 aggcaacgcc tgctgatgaa ggcgaatatg gcagttagcg tcaacctggg ctatcgccag
    29341 cgtatggtcg cagaggctca ccagctgtcg tgtcagcggt gactcgccgt agggcaagtc
    29401 cagtaaaatc cagctataac gcccgctcgc tttcagcgcc tggatagccg atccgatctc
    29461 tcccagcgtc tcctgccagg cctgcggatt ttcccattct tgcgaggtga gctgtccaaa
    29521 cggcagtaga tcaagctgcg aggtataacg taacccggca tcgcgccagt cctggccgtc
    29581 cagcaacgat cgcgcccaac cgccctgatg gacgaagtcg acgttaaacg acatgcgcag
    29641 caggttatcg gggctggcgt caatcaccag gacattttcc cctaagattt gtaacgccca
    29701 ggcgagtgct gcggtgagag atgtggttcc caccccgccg cgcacgccct gcagtcccag
    29761 aatcgccatt catggcttcc ttaatgaatg tggttgcgca aattcagcca ggagcggcca
    29821 tcttttaatc gccgccgcca actgttcgcg ttgggaaata tcggtataat ctatttcggg
    29881 tagtgaaaac gcctggctta atgccagaaa atcattttga aaagtgtagc ccaacgttgg
    29941 atcggactga gcgccaggtt cattgttata cattctggtt gctccttttt aaatatttct
    30001 cactggcagc attacgcccc gtcgtcaata cgggagaacg cgcatttttc atctttccgt
    30061 gacatcattt ataatgtgta aaaatgcaaa gcgcagagtt acagggcatc ctgccggaca
    30121 aattgattca catgctaaat ctgatgcgtt ttaatttcaa tgttaggttt atttctgtgc
    30181 tttcgctagt aaactgataa acagttaaaa tagtgacatg agggacactg tggaccccgt
    30241 attttctctc ggcatctcat cattatggga tgaactgcgc catatgccaa ccggcggcgt
    30301 ctggtgggtt aacgccgatc gccagcaaga tgccatcagc ctggtgaatc aaacgattgc
    30361 gtcacaaacg gagaatgcaa atgtcgccgt catcggcatg gaaggcgatc ctggcaaagt
    30421 aatcaaatta gatgaatctc acggtccgga gaaaatccgc ttatttacca tgccggattc
    30481 agaaaaaggg ctatactctt tgccccacga tttgctttgt tctgttaacc cgacgcatta
    30541 ctttttcatt cttatttgtg caaataacac gtggcggaat ataacgtcag aaagcctgca
    30601 taaatggctg gaaaaaatga ataaatggac tcgttttcat cactgttcat tgttggttat
    30661 taccccttgt aataatagtg ataaacagtc ctcgttgttg atgggcgagt atcgctcact
    30721 tttcggcctc gccagtttac gttttcaggg cgaccaacat ttgttcgata ttgccttctg
    30781 gtgtaacgaa aaaggcgtca gcgcccgaca gcagttattg ctatgtcagc aggacgaacg
    30841 ctggacgcta tcccatcagg aggagacggc aattcagccg cgtagcgacg aaaaacgcat
    30901 tcttagccac gtcgccgtcc ttgaaggcgc gccgccgctc tcggaacact ggacgctttt
    30961 cgacaataac gaagcgctat tcaacgacgc gcgcacggcg caggccgcga caattatttt
    31021 ttcgcttaca cagaacaacc aaatcgaacc gcttgctcgt cgcattcata ctttgcgacg
    31081 ccagcgggga agcgcgctga aaattgtcgt gcgcgaaaat atcgccagtt tgcgcgccac
    31141 cgatgagcgc ctgctgctgg gctgcggcgc gaatatgatc attccctgga acgccccgct
    31201 ttcacgctgt ctgacgctta ttgaaagcgt gcaggggcag cagttcagcc gttacgtacc
    31261 ggaagacatc accacgctac tgtcgatgac gcaaccgttg aaactgcgcg gttttcagcc
    31321 gtgggatacc ttttgcgatg ccatccatac gatgatgagc aacaccctgc tccccgccga
    31381 cgggaaaggc gttctggtcg cgctgcgccc ggtgccgggc attcgggttg agcaggcgtt
    31441 aacattatgt cgaccaagcc gaaccggcga tattatgacc atcggcggca accgtctggt
    31501 gctgttttta tcattctgcc gggtcaacga tctggatacc gcgttaaacc atattttccc
    31561 tttgccgaca ggcgatattt tctctaatcg tatggtctgg ttcgaagata aacaaatcag
    31621 cgccgagctg gtgcagatgc gcttattgtc gccggaactg tggggaacgc cgctaccgct
    31681 ggcaaaacgc gccgacccgg taataaatgc cgaacacgat ggccgcatct ggcgtcgtat
    31741 tcctgaaccc ctgcgattgc tcgacgacac cgcggagcgt gcatcatgat gaccatcagc
    31801 gatatcgtgc aaattattct tttttgcgcg ctgattttct ttccgctggg gtatctggcg
    31861 cgtcattcgc tacgccgtat cagtgatacg acccggctgc tatttgccaa acctcgttat
    31921 gtaaaaccag ccggaactct gcgccgcgct acgaaagtca aggcagacaa aaaatgactc
    31981 agcatactca aactccttca atgccttctc cgctctggca atactggcgc ggtctttccg
    32041 gctggaactt ctattttctg gtcaagtttg gcctgctgtg ggcaggctat ctgaattttc
    32101 atcctttact gaatctggta ttcatggcgt ttctgctcat gccaatacca aaatatcgcc
    32161 ttcaccggtt gcgccactgg attgccattc ccgtcggctt cgcgctgttc tggcatgata
    32221 cctggctgcc cggcccgcaa agcattatga gccaggggac gcaggtggcg gaattcagct
    32281 ccggttatct gctcgatctg atcgcccgtt ttattaactg gcaaatgatc ggcgccatct
    32341 tcgtactgct ggttgcctgg ctatttttat cacagtggat tcgggttacg gtgtttgtgg
    32401 tcgccatcat ggtatggctg aatgtcctga cattaaccgg cccggttttt acgctgtggc
    32461 cggcaggcca gccaaccgat acggtgacga cgactggcgg taacgcggcc gctaccgtcg
    32521 cgacagcggg cgataagccg gtcatcggcg atatgcctgc gcaaaccgcg ccgccaacga
    32581 ccgcgaatct gaacgcctgg ttgaacacct tctatgccgc ggaagaaaag cggaaaacga
    32641 cgttcccggc gcagcttccg cctgatgcgc agccgttcga cctattggtc atcaatattt
    32701 gttcgctctc ctggtcggat gtcgaagcgg caggcctgat gtcacatccg ctatggtcgc
    32761 actttgacat tttgtttaaa cactttaatt ccggtacgtc ttacagcggc ccggcggcca
    32821 ttcgtctgct gcgcgccagc tgtggtcaac cttcgcatac ccgactttat caaccagcca
    32881 ataacgaatg ttatctgttt gataatctgg cgaaactggg ctttactcag catctgatga
    32941 tggatcataa cggtgaattt ggcggcttcc tgaaagaagt tcgcgaaaac ggcggtatgc
    33001 agagcgaact gatgaaccag tccggcctgc caaccgccct gctgtcattc gacggctcgc
    33061 cggtatatga cgatctggcg gtcctgaacc gctggttaac aggggaagaa cgtgaagcca
    33121 attcccgctc cgcgactttc tttaacctgc tgccgctgca cgatggcaac cacttccctg
    33181 gcgtcagcaa aacggcggat tataaaatcc gcgcgcagaa actgttcgat gaactggacg
    33241 ccttctttac cgaactggag aaatccgggc gtaaggtgat ggtagtcgtc gtaccggagc
    33301 acggcggcgc gctgaagggc gacagaatgc agatctcagg cctgcgcgat attcccagcc
    33361 cctccatcac caacgtcccg gcgggcgtga aattttttgg catgaaagcc ccgcatgagg
    33421 gcgcgccgat tgatattaat cagccgagca gctacctggc gatttccgaa ctggtcgtac
    33481 gcgccgtgga cggtaagctc tttaccgaag acagtgtgaa ctggaacaag ctgaccagca
    33541 atctgccgca aaccgcgccg gtttcagaaa acgctaatgc ggtggtgatt cagtaccagg
    33601 gtaagcccta cgttcgtctg aatggcggcg actgggtgcc ttacccgcag taaaccgaaa
    33661 aaggccgcaa ggtttcccct gcggcctggc tcgggcgcat gttgccatta cggcggacag
    33721 acgctcaaaa cgcgttactt cctgtcacgt agccagttga cgatcacact ggcgataatg
    33781 ccagcaatga tcggcgccgc cagatcgtgc cagaaggcca cgcccaactg cgtaagcgtc
    33841 atatagccgc cttgttgcaa tggcaaccgt tcgcggctat ctttaaagtg tttgggttca
    33901 agttagcccc cgtcaggttg ccaggtttat accagtcaac gtgcgggggt tttctctatc
    33961 cagcaaccta tgccgccggg gctcaagccc ccgcaacatt gcgcctcacc gggtaaaccc
    34021 ggcttgctgc tgatattacg gcaaaatccc cgtcccggca cggcgctaac gtgcaatctg
    34081 cgtgacgctt cgcagacgac tacttttatt tgccagaata cattcagcat ttctgaggct
    34141 ggcagtcagc cgctcaattc tgtaaattat gcctcctcgc ggccagtccc ggtgataccg
    34201 aaaccctcgt tcagcatcct gcgtctatga catattcgcc tgttgcgcca gaggaatggc
    34261 taaaagcagg tattaccgac gaacttatcc gtctttcagc gggacctgaa gatcccgacg
    34321 atattattca tgaccttgaa cgcgccagca gaaaagcagc attctgacga ttgctcggcg
    34381 aaccgctgtc accggtttgc cgcatcgggt atcaaggcac tatagcctgg ttataggcag
    34441 cattctttat gagagagctg cgtatatttt gggcaggggg ctctatgcag gacgacacat
    34501 taccattaaa taacagtaac gctacgacca caccgctttc aacgagatta ccgtttacaa
    34561 aatatgattt tggctgggtg ctcttgtgta tcggtatggc aatcggcgcc ggtaccgtct
    34621 taatgccagt gcaaatcggt ctcaagggga tctgggtatt tattaccgct tttatcatcg
    34681 cctatcccgc tacctatatt gtgcaggata tttatctaaa aacgttatct gaaagcgaaa
    34741 cctgtgacga ttatacggat attatcagtc actatcttgg caaaaactgg ggcgtttttc
    34801 tcggtgtaat ctattttctt atgattatcc acggggtgtt tatttactcc ctgtcggtgg
    34861 tgtttgatag cgcctcctat atcaaaacct tcggccttac tgaggccgat ctttcgcagt
    34921 ctattatcta taaagtcgcg attttcgccg tgctggtggc gattgcctcc ggcggggaaa
    34981 agctattatt taaaatttcc ggcccgatgg tagtggtaaa agtcgggatc attctgatat
    35041 tcggtttggc gatgatccca cactggaatc ttgataatat ttccgccttt cccgccgcat
    35101 cggttttctt tcgcgacgta ctgctcacta tcccattttg cttcttttct gcggtcttca
    35161 ttcaggtgct aaacccaatg aacatcgcct atcgtaagcg cgaacctgac cgtgtgctgg
    35221 ccacccggat ggcgattcgc acgcatcgca ttagctatat tacgctgatt gccattattc
    35281 tctttttctc gttttcgttt accttttcga ttagtcatga agaggcggta tcagcgttcg
    35341 agcagaatat ttccgctctt gcgctggcag ctcaggtaat ccctggccag atcatccaca
    35401 ttacctctac catcctcaat atttttgccg tacttaccgc gttctttggt atttatttag
    35461 gttttcacga agcgcttaaa ggtattgtac tgaatgtgtt gagtcgcatt atggatgtca
    35521 aaaacatcaa cccactgtta ctgacatctg gaatctgtgt ctttatcgtg gttactctgg
    35581 ttatttgggt ttcgtttcgc gtctcagtat tggtcttttt ccagttaggc agtccgcttt
    35641 atggcattgt cgcgtgtatt attccctttt tcctgattta taaagtagcg caactggaaa
    35701 aattacgcgg cctgaaaacc tggcttattc tgttatatgg aatattgttg tgcctgtcgc
    35761 cgttattaaa attgattgaa taagagccta tcccaccagg cgttattggc acagccagtt
    35821 tggacacgga cagcgcgcaa aaaccggagc gtacacgtag tacgtgaggt ttgactcgct
    35881 acgctcgccc ttcgggccgc cgctagcggc gttcaaaacg ctaacgcgtt ttggcgagca
    35941 ctgcccaagt ccaaaatggc aagtaaaata gccctaatgg gataggctct aagtcgtacc
    36001 ggagagccat gcccggtggc gctacgctta ccaggcctac aagtaaggtg taggcttgat
    36061 aaggcgcagc cgccatccgg cataaaacgc aattaactca gcggcttctg cgggttttca
    36121 tcctgatcga cggcaaagca ggccaccaac tggccgtcgt actctttaag ctgcggctgt
    36181 aactgcgtac agggtccgaa gcgacggcgg cagcgggcgt tgaaggcgca gcccggcggc
    36241 gggttcagcg gactcggcaa ctcgccggtc agcttaatcc gctcacggcg atcgtccgga
    36301 ttcagccgcg gcgtggcgga gagcaacgct tgggtatagg gatgacgtgg attgttaaaa
    36361 atctgctctt tggtcccttt ctccacgcag cggcctaagt acatgaccat tacttcatcg
    36421 gcaatgtgct ccaccaccga caggtcgtgc gagataaaga cataagacag ccccatatcc
    36481 tgttgcaaat ccatcatcag gttcagcacc tgagcgcgca ccgacacgtc gagcgcggag
    36541 accggttcgt cggcaatcac tacgtccgga tcaagcatca gaccgcgggc gatagcgata
    36601 cgctgacgct ggccgccgga gaacatatgc ggatagcggt cgtagtgctc ggttttcagc
    36661 cccaccttcg ccatcatcgc cagcgctttt tcacggcgct gctctttgct gagcgaggtg
    36721 ttaatcagca acggttcttc cagaatttgc cccactttct tgcgtgggtt cagggaaccg
    36781 taggggttct gaaacacaat ctgaattttc tgccgccgca gtttctgcgc gtgcggatcg
    36841 tgtttgagca gatcctgccc ctggtaataa agctcgccgc cggttggcgt ttcaaccatc
    36901 gtcagcaggc gacccagtgt ggattttcca caaccggact cccccactac cgccagcgtt
    36961 ttaccgcgtt cgagattaaa cgacacgccg tccagcgctt ttaccagccg ttccggagaa
    37021 aagatcccct tcttcaccgg atagtgtttt ttcaggtcga tagcccgcaa cagcggctgt
    37081 tgcaaggtgg cctcatgcgt actcatagtg tgggcctccc ggcatcatcg agtgggtaat
    37141 gacattttga ctgacgtcca tcgtccagtt ggttgagagc aggttcttcc gcacgacatc
    37201 tgtccgtggc gtgggggcag cgagggttaa gcagacaacc cgtcggtcgg tcatatttcc
    37261 ccggcaccac gcccggcagc gacgccagac gcgctttatc ttgcgcaaac tctggtaacg
    37321 cacgtagcaa tgcctgggta tacggatgac gcggcgcgcg gaaaatatcc tgcgcagcgc
    37381 cggtttcgac gacctgcccg gcgtacatga cgataatttt gtgcgccgct tccgccacca
    37441 gcgccaagtc atgggtaatc agcaccagcg ccatgttctc tttttgctgc aactccagca
    37501 gcagctcaat gatttgcgcc tgaatggtca catccagcgc cgtggtcggt tcatcagcaa
    37561 ttaacagctt tggtcgacag gctatggcca tcgcaatcat cacgcgctga ctcatgccgc
    37621 cagaaagctg gtgcggatag acatccagac gagaagccgg atcgggaata cccacctggt
    37681 tcaacaggtc aatcgctcgc tgacgacggg ttttcttgtt cccgccctga tgtaccttga
    37741 tggcttccat aatctgaaag ccaacggtat agcaaggatt gaggctggtc atcgggtcct
    37801 ggaaaatcat cgccacttca gcgcccacca ggttgcgacg ttccttctcg gaaatgcgct
    37861 tcagatcctg tccgttaaag agcaggtttt ccgccatcac gcggcctggg taatcgataa
    37921 gccccataat cgccagcgag ctgacggatt tgccggaacc agactcgccg acaataccga
    37981 ccacctcacc ctgcttcacg ctgtagctaa tgcggtcgac ggctttgaac ggtgtccctt
    38041 cgtcgccgaa gtgcaccgat aattgatcta catttaataa cgccatctcg aacctcttac
    38101 tgcttcagtt tgggatcgag cgcgtcacgc agaccgtcac ccatcaggtt aaatgccagt
    38161 accgtcagca gaatcgccag ccccgggaag gtcacgaccc accaggcgct ttgcgcgaac
    38221 tgcaatacat cagagagcat ggtgccccat tccggcgtag gcggctgcgc gcccatgcca
    38281 agaaagccga gggcggccat atcgagaatg gcgttagaga aaccgagcga tgcctgaacg
    38341 atcagcggcg caaggcagtt cgggaaaata ttgacgaaca tctgacgcat cgcgcctgcg
    38401 cccgccacgc gggaggcagt cacataatcg cggttcacct ctaccagaac cgccgcgcgg
    38461 gttaagcgga catagtgcgg cagcgccaca aacgtcaacg ccagcgcagc gttgccgatg
    38521 gaggggccga agatcgccac cagcaccagc gccagcagca ggctcggcag ggccagcata
    38581 atatcgacca cgcgcatgat gatgttatcg accagaccgc cgaagtagcc cgcgactagg
    38641 ccgagaataa tccccatgac cagcgacagg acgaccacca gacagccgac cagcagcgac
    38701 aaacgcgcgc catacatcag gcgcgagagg gcatcgcgac caacatcatc cgttcccaga
    38761 atatgcgccc aactgccgcc ttcctgccag accggcggcg ccagcagcgc atcgcggaac
    38821 tgctctgccg ggttgtacgg cgcaataaag ttggcaaaca ccgcaatcag gatcacgatg
    38881 agaacatacg ccagcccgac gaccgcgcct ttattgcgtt tgaaatagtg ccagaactcc
    38941 cgcaatggcg tcatgggcgc cggtgcggca ttaacattat tttcagtaac ctgtgacatg
    39001 atggcccctt acttcttatg ccgaatacgc gggttcacca cgccgtacag caggtctacc
    39061 agcaggttga cgagaataat catcgtcgct accagtaaca cgccgccctg cactaccgga
    39121 taatcgcggc gttgcagcgc atcgatcagc cagcgcccca gaccgggcca cgagaagata
    39181 gtttctgtca gaatcgcgcc agccaacagc gtcccgacct gcaggccgat cacggtgacg
    39241 actggcagca tggcgttacg cagagcatgg acgataatga cgcgcatcct ggtcaaccct
    39301 ttggcgcgtg cggtacggat gtaatcctcc cccagcactt ccagcatcga cgaacgggtc
    39361 atacgcacaa tgacggccag cgggattgtg ccgagcacca tcgcaggcag gatcatatgc
    39421 gccagcgcat caataaagtt accctcttcg ccccagatag cggtgtcgat cagcataaag
    39481 cccgtcaacg gattggtatc atcaaggaac accatatcgc tcacgcgccc ggaaaccggc
    39541 gtcaggttcc agtggacgga gaccagcatg atcagcatca tgccccacca gaagataggc
    39601 atagagtaac cggtcagcgc caggccaacg gcagtgtgat cgaagataga accgcgcttc
    39661 actgcggcca gcacgcccac cggaatcccc acggcgacgg caaaaatcat ggcgcagacg
    39721 ccaagttcca gcgtcgcttt aaagcgaggt acgaactcgt cccacacggg gattcggctt
    39781 ttcagcgaga tgcctaaatc gccatgcatc accccccaga tataatggag gtactgctgc
    39841 cacatcggtt tatcaagacc gagttcagcc agcagttgag catgacgctc aggggaaata
    39901 cctcgctcac ccgccatgat catcaccgga tcgccgggga tcatgtggac aaaggcaaag
    39961 gtgagaaggg taataccgat aaacgtcggg ataacgagtc ccaaacgtcg gagaatgaac
    40021 tgcaacataa cccgaattct ctctcatgac gcacggcctg gaaccgtgag tctgtattgc
    40081 tcacaaatct tatcccacgc aaactgcatc gcggataaag cattacgccg gatggcgctg
    40141 cgcttatccg gcctacacaa caccggggcg cagcgctctt ttaattattc gacagagacg
    40201 ttttcgaagt gatgtttgcc taatgggtca accacatagc ctttaacttc tttacgtact
    40261 ggctcataaa ccgtggagtg agcgatgatc agcgctggcg cctggtcatg catcacaacc
    40321 tgggcctgtt tatagagttc aatacgcttg ttgtggtcat cggtcgcacg cgcaggctga
    40381 atcaggtctt caaacggctt gtagcaccat tttgaatagt tggagccttg ctgggcggca
    40441 tcgcagctga acagcgtggc gaagaagtta tccggatcgc cattatcgcc ggtccagccc
    40501 atcatcaccg tctggtgctc gccatcttta gcgcgcttga ggtattcgcc ccattcatag
    40561 gtgacaattt tggcctgaac gccaatcttc gcccagtccg cctggatcat ttccgccata
    40621 cgacgcgcat tcgggttata gggacgctgt accggcatcg cccatagatc gatggtgaag
    40681 cctttttcca gaccggcttc tttcagcagc gccttcgctt tttccggatc gtagccgtag
    40741 tctttaatat cgtcgttgta gccccacatc gtcggcggga tcaggttttt cgccgcaacg
    40801 cctgcgccct gataaacggc tttgatgatg gcctctttat tcacggcata ggtcaacgcc
    40861 tggcgaactt tgacgtcatc cagcggtttt ttctgcacgt tataggagag ataacccacg
    40921 ttcagaccgg cctgctccat caggttgatg tttttatctt ctttcatgcg cgcaatatcc
    40981 gccgggttcg gatacggcat cacctgacat tcgttcttct gcagtttggc gtaacgcaca
    41041 gaggcgtcag gcgtaatgga gaaaaccagg cggtcaattt tcggcttcgt gccccagtag
    41101 ccgtcaaagg ctttgtagag aatgcgggaa tctttctgat attgcaccag ttggaatggg
    41161 ccagtgccga ccggattcag atccactttt tccggcgtac cggctttcag catgttgtca
    41221 gcatattctt tggaaagaat agaggcgaag tccatggcta aatcggcaag gaacggcgct
    41281 tccggacgcg tcagcacaaa ctgcaccgtg tgatcgtcta ccttcttcac ttcgctaatc
    41341 agatccggca gccccatgcc ttcaaagtat tcatagctgc cgccagacac tttatggtac
    41401 gggttctgct cgtttttctg ccggtcaaaa gagaacacga catcatcggc gttcagctcg
    41461 cgcgtgggtt tgaaatcctt gctggattgc catttcaccc ctttacgtag gtggaacgta
    41521 taggttttac cgtcttcgct gatatcccac ttctcagcaa gacccgggat cacttccgtg
    41581 gtgccggttt tgaattcaac cagacggtta tagataggta cggagctggc atcataggtg
    41641 gtgccagacg taaagagctg tgggttaaag ccttccggcg agccttctga acaataaacc
    41701 agggttttgg cctgcacgct tgctgcaacg gtcatggcca ccaggctcaa accaagcttc
    41761 agcatccctg acttcttcaa ggaaatactc attcttctgc tccaattgtg atgtatgttg
    41821 ttttgccctt tgcaaagact tttaccgctc ggcctttttt gttttttacc tggtcaggtc
    41881 agtagtgaga ggtggggatt ccgttcgcat aatcgactga gttgcagtgc ggattctcca
    41941 taaaatgccc ctcattccct acaatctgtc aatagaatgt caaaacgtca atacaggtaa
    42001 ccagctttta caacaacggt gagaattaac aaacaaagat taaaaaaagt tcagaagggt
    42061 attttcagca gggaaatttg tgctacaggc agaaaggcag agttattcac ttaatatttt
    42121 gcaacagtta gtgattaaca attagccatt aattgaaaaa tttctttcga tatgttgatt
    42181 atctgagcga ttaataccac taacgctaaa acgcacaggc gaaaatgctg aggttatcca
    42241 taagccgtgt gcaaagaaga gtgatccgga cattgaaaaa caccatcgaa tatgttacaa
    42301 aattgtaaat aagtaggccg tcgtgcggcc taccgcgatc acaaaaacta acttttggcc
    42361 ctggcctgcg tgcgcttttc gctccagtta aacaacgagt tcaccagaat cgccgtcaac
    42421 gtccccgctg ccatgccgtt gccaaagacc atctgtacgc ccgccgggaa attctgatac
    42481 aggccgggta ccagtatagg tagcattccc atggccagcc ccatcgccag cgcgtaggtt
    42541 ttacccggcg tatgcagtgg ctcacgcgca atcatatcaa tgccgataac cccgataatg
    42601 ctgaagacaa tcaccgccgt accgcacacc accgaacctg gcagacaggt cgccagacgt
    42661 accagcggcg cgaatatggc aatcaggatt aacaatcctc cggcagccgc agtcacgaaa
    42721 cgcgatttca cgttagtggt gcgtatcacc ccaatatttt cgccggaggt gataattaag
    42781 gaggtgccaa aaatcccccc agcagcgaca ttaccgcatc accacgaatg gtacgtggaa
    42841 tcgcctgttg cacattttgc gtggaattga ctatttccgc ggtcgcaatc gtttgcccag
    42901 ttgcttcagc catagagatg accgcgtaaa tcagtaaagg cagcgaggcg gagagatcaa
    42961 aaatcggcca gccgaacggc aaaagctgtg ggaaactaaa cagcggcccg tgactaacac
    43021 cgctaaaatc ggtgctgccc agcgccattc ccagcagcgt ccccgctaaa aggccgaaca
    43081 tcaccgccag ctggcgcaaa ataccgctaa acgccagcgc gaaaatcagc gttatcagga
    43141 tagtccccag cgataaaatg atactggttg gatgagcgaa gtcggcgctc cctggctggc
    43201 caatgatcaa cccgccgtac aggcgaataa ggttaatcga caccattagc agcatgatgc
    43261 caatgataaa ggggggaaaa tggtgcaggc agcggcggaa aatcggcaac gcgataaagt
    43321 agaacagcga ggtcagaatt acggcgccaa tcgcggtctg gatattggtc tgtaaagcga
    43381 tcgcaacgaa aatcgcaatc ggcgcgcccc ccggtaccat aataaacggc aaacgcgcgc
    43441 ccaccccttt cacacccagg ctttgcagaa tagcgcccag accgcacatc agaaaggtcg
    43501 cgctaagtac cgaggcggtc accgtatcgg taaagtggag cgctttggcg atcagaaaga
    43561 cggaggtaat gggggtggcg gcaacgacca gcacatgctg aagcgccaaa agtaaggtgg
    43621 tttgccaggg taatgcatcg ttatccggcg tagtaaggcc aggctgcggc atgattaact
    43681 cccataaaac atcaaaaaaa taaccgccag cgcgggctgg cggtctgcat tatttcaacc
    43741 aactaatggc atcagcggca tagcgatgcg cacggaaggc gctgttctgt tttccaggaa
    43801 taatgccttt actgaggtgc tccggatatt cattaaagaa cggaatgata tattcccata
    43861 ccgtttcgcc ttccggggta acttcaaaca ggcggccaaa cgccgattca cagataaagg
    43921 tgttgccgtt cgccagccgc tgcgcgctcc ccatatacgg cgagaaaaac gccggcggga
    43981 agatatcgcg atactgccag gtaatcgctt tgatctgcgg atcgaactcc agcaccgtgg
    44041 aatgcggcga ggtgacgccg ggacgcaggt tgccgttatc gaaaaccaga atcgacccgt
    44101 tctccatctc aaccggcgtg tgctgctgcg ctaccacttc cggccctgca tgccagataa
    44161 ccttcccgct ctctttatcc acggcaatga cgccggaagt ggtacgcagg ctcatcagta
    44221 ccaggccatc acgggtgacg gacaggccgt taatcatcgg ccagtggcgg cggtcgaaaa
    44281 tatcatgaat cgggaaatct tccggattca aatgctccca ggcacgccat tcccacacca
    44341 cttcaccgtc gcgattgacc tctttgacga cgtcgctctg aatcacgccg tccggcgcat
    44401 cgcggcgcgg gtcgccgccg gtaacacggg cggcgatatc ggcaggtaac ggcgacgcgg
    44461 cggtatacag cagattaccg ttcgccaacc attgcgcatc atggtgatgg taaatatctt
    44521 cgtaatgcca gacgatttcg ttatccggcg tcacttcgta gaagtcgccg ccgtgccaga
    44581 gatcccacgc cggatagagg ttcgctgaag tgcggtggct gccgttataa cccagattac
    44641 cgttcggcag cagcaccgca tcacgcccgg cgcgaaccgg aagctgccac tgatgcgcga
    44701 cttcgccctg ctcgtccacc aggtaaaccc gcccttcggc ggtttgcggc gcaaaaagcg
    44761 tatagccgcc aaagctcttc gccttatcag cgtagataag gcccgccgga cggcgtccaa
    44821 gggtgaaagt cgaatcctga gttaagtgtg ccacatcgcc tcctgaggaa tagatttgcg
    44881 ccaaaatact ccattaaaac gttttaatga agagtttttt acgatcacca ccgaaaaaaa
    44941 gcaaacgtta ccgtctggta aatatgctac cctgtgcgca aattttcgca ggtcaggaag
    45001 cagatggctg ttcaaaataa aaaacgcgca aagttgattg atgttgcccg ccatgcaggc
    45061 gtctcgccag ggacggtatc caatgcattg cacaacaccc gctttgtcga gccgcagacg
    45121 cgacggcgta ttgaagaggc cattgttgcg ctcaactaca cgccgaatat tcgcgctcgc
    45181 cagttacgaa ccggcaaaac caataccatt gctttgctct cttcggtgcc gctggcgatt
    45241 gcctccggcg catcacgact gggatttatg atggaggtgg cgttaacgtc cgcgatgatg
    45301 gcgctggaaa aacagcatgc gctgattctg gtgccaccag gggtaaatcc actggatgcc
    45361 gtcagctttg acgcggcgat cctgattgag ccggcggaga acgacccgca gctccaggcg
    45421 ctggcgcaag cgggcattcc ctgcgtcacc attggccgca cgccggggac cgacacgcct
    45481 gtgccgtggg ttgagctgca ctcggcggca acagcacagc ttctgctaac gcatctggag
    45541 gcctccggtg ccagcaaatg tgcgttattt gtcggtaaca cacggcgaac atcagttcta
    45601 gagagcgaag cggcttacca gcgctggtgc gcggggcgcc aggaccccgt cgtctactct
    45661 ctcaatgaaa gcgagggtga aaatgccggc taccaggccg cgcagcagct attacaggcg
    45721 catcccgacg ttgacggcgt gctggtgctg atagatacct ttgccagcgg cgcggtacgg
    45781 gctttccagg aacaagacat cgccatacct gaacaaatac gggtggttac tcgctatgac
    45841 ggtatccgcg cgcgcgaatc gctgccgccg ctgacggcag tgaatatgca tcttgatgag
    45901 gtggcgcgac aggcaatcac actcctgttt gccgttctgt cgggtgagaa ggtcagctac
    45961 agcgacggga tcatgcctga actggtggtg cgagcgtcaa cctgccggtg acagaggatg
    46021 acttgccact gcgggccgtt gctgacgcaa cgttctctcg cttcgctcga gtcgaacctc
    46081 ttgcccccgg aggttctcat cctcgtcagg cttcagatac aaaaaaccct gctcgctgag
    46141 cagggtttct gaatttggtc ggtgatagag gattcgaacc tccgacccct tcgtcccgaa
    46201 cgaagtgcgc taccaggctg cgccaatcac cgaatgcggg cgcatcttac tgctcaggcg
    46261 cacgcccgtc aatcccttag tcgcaaaata caattcaatc ggcgagaaag tcggcagaca
    46321 acctacttcg cggcgacttt ctgcgcatcg ggaatatggc accagttgtt gttctggtta
    46381 atgccgccat tcggcgatgt ataccccagg cagcccatta tcgtatcgta cagttccaca
    46441 tgacgacgcg gcactttgat ctccgcctgc tgtttcaggt gagcggacat ctgcgcatgt
    46501 tgcggactgg caagatattt atccgacatc cataccagca tcggaacacg gaattgctcc
    46561 ggcggcgcca tattgcgcgg cgtaccgtgc aaatgttcgc gttcgttaat cgactcgccg
    46621 tggtcagccg cgtagaacac aatcgctttt ttatcacgta gctgatcgaa cacactggta
    46681 ataaagtgat caacataggt cacggagtta tcgtaagagt tgatcatctg cgctttcgtg
    46741 cagccgctat cgaccccaat acattcgggc ttccattgag cgtagctgcg cggataacgc
    46801 tgcgtatagt taaaatgcga tcccttggta tgcaggataa tcagatgctt accctccgga
    46861 ttctgggcaa gcgagttctg catctcatca atcaacagca tgtcatccac cgttttaccg
    46921 cggttacgcg gctcggcgcc aatctgctcg cggtaagaga tattatccgc catggtattg
    46981 ctatagaacc acatctcgct ctgcatggcg tacagatcgg aactgaatcc gagctgtttg
    47041 agtacggcaa aaacattctg ctcttttaac gtacgctgcg ggttattatc cgccccacct
    47101 tcccgtacaa acatacagcg taaagaaagc ttcggcgtgg tattacgctc gtagccgaaa
    47161 atccccatgt gatcccaacg ggtcgtctca ccgataatga aaacgacgta ggtgtcatcc
    47221 ccatctttcg gcgcaacata ggtaaatttc ctggccgggt ttattaacga attattgtcc
    47281 gacgactcat ctacctgcgc ccaggcatac agccctaacg cagataacca gtttgagggc
    47341 aggtaggagt tcgccaccac gccgccatag ctgggtaagt cgatgcctgt cgcccgttca
    47401 aactttttct gctgtacatc cagcaggcgg ataggcgccc acaccattac gcctgcgagt
    47461 atcactacag cggcgctgcg aaaacgctgc cccggcgtac gtagctggcg caacaacgtg
    47521 tagcgacagt ggttactcca gataaagatg agcggaagca cgctcacggc aatcagccac
    47581 aatacaaagt gcagccccac cacctctttc gagagatcga tatcggtggt cataacagac
    47641 gcaataatgc cgtagccaat caccacgttc aggaaggtca tgtaataact ggcgccagcg
    47701 gaaaacagca ccaccagcgt ggccagcacg cgccagacgc gtcggccaaa cagtgaaaga
    47761 agacgaagta agaagaaagt gaccagcacc gtggcgccaa gttcgacaac tgcggaaagg
    47821 cctttccaaa tggtaaattc ttgcgcataa ctgccgaaac ggcggtaaaa cacggcgcaa
    47881 ttcataaaca gaccgatata gagcgcaagc aagaaactaa gtttctgctg cgtcatcgat
    47941 ttaatgtatc tcatgcaaac aaaccctggg aatcgggata aaaacgacct gtacaacgat
    48001 tctttaatca aacaggtaaa tatgcggcta acgcagatgt gagaaagtct accagcgcgg
    48061 ctaagtagac cacaggaagc gcaaaaagtg tctatagaga atgtgattga cctatatatt
    48121 tttgtaaata tatagatagg gtattagctg aacttctaat aagtccaggc gacggtttat
    48181 cccgttaaaa cctggcgctc acccccaggg tatacaaata atcgctatcc gtagcgctgt
    48241 tttccgcctg agaaaacgcc gcatacgccg ccaggtgcgg gttaagtaac acgtccgcgc
    48301 ctacggtgac atccagccag tttcccgcct gatttcctgc ggtcatacga ctcaacccgg
    48361 actgcgcttt ccagatattt tccccaaact gttggttata gctgatctgc gcccagggac
    48421 ggacatcgcc gaactgcgag tttacccgcc agcctaacgt actgacgctg gcatgccata
    48481 acggatcggt aagcgctaat gtcgtcgcgc tatcgccata ttcgttatac attgatgacg
    48541 tcgaaccgtc gtaatgcagc gccgcgaccg gcccagtggt tacgcgtcgg gaaagcgaaa
    48601 aattccagcc catactgata ccgctggtcg catcaagcgg ggtttcatcc gccaggctaa
    48661 gcaccggacc caccgtattt tgcgtagact gaatacgttc ggccagtatg tcgttgtaat
    48721 tcggttggtg atcgctgtcc caggtatagc gttccgtcgt atgccccgga gccgcttcag
    48781 cgatatattc ttgttgccag gcatacgtgg tattgataaa aaacgagcag gccataaggc
    48841 ccgccagaca acgcaatgtc cggcgaccac ggcgttttct tacaatcatc aacgcgactc
    48901 cagagtagag ccgaattcgg cgatattatt gtcattgaat gaaggatgtc ggacatcagc
    48961 cctgtattaa ctattgtcct tttagcggac ccgtcaaggc gggttgaagg aaattttcgc
    49021 ggtaaccaca ataacgagga agtctatgca gcgttgcgac tgggtcagcc aggaccccct
    49081 ttatattgcc tatcatgata acgagtgggg cgtaccggaa actgacagca gaaagctgtt
    49141 tgaaatgatc tgtcttgaag gtcaacaggc cggtttatcc tggatcaccg tgcttaaaaa
    49201 gagggagaac taccgcgcct gttttcatca gtttgacccg atacgcatcg cagctatgca
    49261 ggaggaggat gttgaacgcc tgctacagaa cacgggcatc atacgacatc gcggtaaaat
    49321 tcaggccatt atcagtaacg cccgcgcctg gcttgcgatg gagcaaaacg gcgagtcttt
    49381 cgccgatttt gtctggtcat tcgttgatgg tcagccgcag atcacccagg cggccagcct
    49441 ggataagatc cccacctcaa cacctgcgtc cgatgcgctt gctaaggcat tgaaaaaacg
    49501 cggtttcaag tttgtcggta cgactatctg ttactccttt atgcaggcgt gcggactggt
    49561 caacgaccat attaccggct gtttttgcca tccgggagaa aaacatgatt cgcaaatccc
    49621 agagtgaaga catggcgtct attctggcgc tgtggatgaa aagtaccatt tatgcccatc
    49681 cctttatcga agaacgttac tggcacgaga gcgaagcaat tgtacgcgac gtctatttac
    49741 ccgccgcgca aacctgggta tgggaggaaa atgggcaact gaaaggcttc gtcagcgtac
    49801 tggaagcccg ttttgtcggg gcgctgtttg tcgcccccga cgcgttaaga cacggcattg
    49861 gcaaagcgct tctggaatat gtccagcaac gttttcctct gctgagcctt gaggtttacc
    49921 agaaaaatca atccgccgta aacttctacc atgcgctcgg ttttcgtatt gaagatagcg
    49981 cctggcagga ggatacctcc caccccacct ggattatgag ttggcaggcg gatcaaacgc
    50041 cgtaagcggt agcgccgggc cggtatattt ctcaaaccag accagcgcgg tgttgcccgc
    50101 acaaccgttc cccagccggg aactgggaag atcttttgtc aggacgttta ccgcgccgtt
    50161 tttgcatatg ccgcctgcgg taggttcagg gtccggccat gcgccttcgt gaatacagat
    50221 aacgccaggc cgaattccgt cggtaacgac cgcgcccgcc agaacctgcc cgcgatgatt
    50281 ccagacgcgt accgtatcgc catcgacgat tccgcgtgtt gtcgcatcct gcggatgaat
    50341 cgttaccggt tcgcgtccgg ctaccgcata ccgctcccgt aacgaactgt agttgagctg
    50401 gctatgcaga cggtgcgccg gatgcgcgga aagtagctga acctgccccg catcggcgtt
    50461 cccgtgccac tcatccggcg ccagccacat cggatgaccg ggacaatccg cataaccata
    50521 gctggcaatg cgcgcagaat agatttcgat tttgccgctg gccgttttta gcggatggtt
    50581 atcaggatcg cggcgaaaat ccgcgaagcg cacaaactgc gcgttggcgg gattttccgg
    50641 catctccagt aaacggttag cctgccagaa tgcggcaaac ggcggcagcg tcaccccctg
    50701 gctggcgcca cgctgggcgg caatattgta gaaggtctcc agccacgcca gctcgctttt
    50761 tccttcggtg aaccgagcat aaccgccggc ttcccaccgt tcgctcagtt cagcaaaaac
    50821 gtcaaaatca ttccgcgcct cccaccgggg cgacacgacc tgcttcatcg gcgccaaatg
    50881 ctgattgcta tagtcgccgg tcatggttaa atcgttacgc tcatagctgg tggtcgcggg
    50941 cagaacgata tccgcgtgtt tcgcggcggc cgtccagaaa cattccgaga taacgaccag
    51001 ttccggtttt tgccacgcac gaatcagacg gttggtatcc tgatgatggg taaagttcgc
    51061 gccacccgcc caccagataa aacgaatatc cgggaagcgg cgatccatcc cattgtgttg
    51121 gtaaaaccca ccggggtttt ccagcgcctc gacaatacgc gccaccggta ttttatctac
    51181 cgcatcgacc ccgccaggga tgctcccctg tatcgacgct aacacggcgg cgcggcgcgt
    51241 cgggtttccg ccgttagcaa aatgataaga aaaaccaaac ccgccgccag gcgtaccaat
    51301 ttgccccagc attgcggcca gcgtaacgat catccagtgc ttttgctcgc cgaactgctg
    51361 acgctgcatt ccccaaccag ccatcaacat ggtggtgtta tgatgaaata tttccgccag
    51421 ttcgcggatt ttcaccgcag aaacgccgca aatttccgcc gcccattccg ctgttttggc
    51481 cgtaccgtcg gtcgtgccca aaagatagtc agcgaagcgg tcatagcccg tcgtgcagcg
    51541 ggcaaggaac gcttcatcct gccaaccgtt ttccaccagc gtatgagcga tccccagcat
    51601 taacgccaca tcggtgccca tatgtggggc gatccactcc atcttatcgc caaaaaagtc
    51661 gacgctttcc gatcgcatcg gatcgatgca gatcaggcgt ttgccgcttt gtcgcagcgc
    51721 cgcaaaatag tcgagcccct gttcatccga ggcgttccag gcaattttca gagtattcag
    51781 cgggttcgcg ctccagagca ccaccacctc gctatgttcc agcaccaccg gccagctagt
    51841 ctgctgctgg taaacctcgt taccacccac cacataaggc atgatagcct gcgccgcgcc
    51901 ggtggaataa tcgccaagat ggccggtata ccctcccgcc agcgccatgt aacgctgcaa
    51961 tagcgtagcc gctttatgca atacgccgtt cgaacgccaa ccgtaggagc cggcgaagat
    52021 ggacgatggt ccataacttt cacgaatacg tttgtgctga gcgtggatca gatccagcgc
    52081 gtcatcccaa cttacgcgaa caaactcatc ctgcccgcgt atgccttgcg gcttatcggg
    52141 agaagccagg aaccctttac gcaccatcgg gaagcgaacc cgcgttttgc tgtgtacctg
    52201 gtcatgcaca acggtttgca gggagttctg gtgtgccgtc gggagttcgc catatgaagc
    52261 aaaaatgcgt tctccgtcgg tttcaacacg gactggcccc cagtgtgcgg cggtcaatac
    52321 cgaatgacgc gatggtgcgt gggtcaaggt tcgctcctga attattggga ttatttattt
    52381 tgccgatcaa tgttacttac aaatttcaga gttttccctg gaattttctt catgtgcaga
    52441 cgtcataatc aaccgccacg gtcgctgtgg taaaaataaa aaagtgataa ggatttaaga
    52501 tgaaaaaacg tgtatttgtg attgctgcca tcgtgagcgg cgccctggca gtatctggct
    52561 gcacaacaaa cccttacacc ggcgaacgcg aagcaggtaa atccggcatt ggcgcgggta
    52621 ttggatcgct ggtcggcgca ggcatcggcg cgctctcctc ctccaaaaaa gatcgcggta
    52681 aaggcgcgct gattggcgcg gcggctggcg cggcgctggg cggcggcgtg ggttactaca
    52741 tggacgtaca ggaagcgaaa ctgcgtgaca aaatgcgggg cacaggcgtt agcgtgacgc
    52801 gaagcggcga taatatcatt ctgaatatgc cgaataatgt caccttcgac agcagcagcg
    52861 cgacgctgaa accggcaggc gctaacacgc tgaccggcgt ggcgatggtg ctgaaagagt
    52921 atcccaagac cgccgtcaat gtggtgggct acaccgacag taccggtagc cacgatctga
    52981 atatgcgtct gtcgcagcag cgtgctgact ccgtcgccag ttcgctgatc acccagggcg
    53041 tcgacgccag ccgtatccgt accagcggaa tgggtccggc gaacccgatc gccagcaaca
    53101 gtacggcaga aggtaaggcg caaaaccgcc gcgtcgaaat taccttgagt ccattgcagt
    53161 aaactaccgt accgggtaag gcggcatgct ttacccggcc tgcattattc cctcgccaga
    53221 ccggatacac gtcgcattat tcagtattca ttcactattt accacgacac ggctgccgac
    53281 agcggggaaa tcggctggtc gatgatggct aaacgggtta ataataagcc tgttccggtt
    53341 ggcgcatgcc gcgcttacct tttgatttac ggagagtcgc atgaagccgt ccatcattct
    53401 ctacaaaacc ctgcctgatg atttgctgca tcgcctggag gcgcatttta ccgtcaccca
    53461 ggtaccgaac ctgcatccgg aaacggtcgc gcgacacgcg caggcatttg ccagcgcgca
    53521 aggccttctg ggcaccagcg aaaccgttaa ccgcgcgctg ctggaaaaaa tgccggcgct
    53581 acgcgcggcg tcgaccatct cggtgggata cgataatgtc gaggtggacg cccttactgc
    53641 ccgcaaaata gtcctgatgc acacgcctgc cgttttgacg gaaaccgttg ccgatacggt
    53701 gatggcgttg atgctggcca ctgcccgccg cgtggtggac gtcgcagaac gggttaaggc
    53761 gggtgaatgg acagaaagca ttggcccggc atggtttggc gtcgatgtgc atcacaaaac
    53821 actcggtatc gttgggatgg ggcgtatcgg gatggcgctg gcgcagcgag cgcactttgg
    53881 gtttaccatg ccggttctct atcacgcccg tcggcggcat caggaggcgg aagaccggtt
    53941 taacgcccgc tactgcgatc tggatacgtt gttgcaggag gccgattttg tctgcgtgat
    54001 cctgccacta acggcagaaa cgcgacatct gtttggcgca acacagtttg ccagaatgaa
    54061 atcgtccgcc atttttatta atgccggacg cggcccggtg gtcgatgaaa acgcgctgat
    54121 tgccgcgctg caaaacggtg aaatatatgc ggcaggtctg gatgtctttg aacaggaacc
    54181 gctatctgtg gattcgcccc tgctgaacat gtctaatgtc gtcgcggtgc cgcatattgg
    54241 ctcggcaacg catgagacgc gctacaacat gatggcctgt gcggtggata atttgattga
    54301 tgcgctgcag ggaaaaatag agaagaactg cgtcaatccg caagcggcgg gataacgcta
    54361 caggcccgat aagcgctggc ttgcgcttat cgggcagact gtcattactg ggtcgcgttt
    54421 accgccgccg tccaggcctg attaaacgcc tgatgctgcg aggccaacgg cccaatcagc
    54481 gcattatatt ggctggcctg ctgtgaggtc gggaactgaa tgccgttcgc gacaaagctc
    54541 acctgctcgc cctgttgcgc aatataatcg cccacttgta ccaactgctg cgtaaagatc
    54601 tgcgccgccg ggatcagcgg ctgcaaagca tctgccggca cggtgaccac ttttttgtag
    54661 acctgatcaa acacaggttt caggtcatcg gcctgcttta acgcgccatg cgcggcatca
    54721 gcctgcagtt ttgcattctg caactgttgc gccagcacgc ctaacgaacc atttgcctgc
    54781 cgcagcggct cgcgttgcgt catataatcc tgcggaacgc ggatggcgtt aacgctatcg
    54841 accaccgggc gcagaccgga atccatcgcc tggtttacct gctgcgagta gccatacagt
    54901 atcgcgtaat cagacacgaa cggaccaaac tgctttttct gatcggccgt cagcgttggt
    54961 aaacgctctc cgctacgcat tgctgtattc tgcaggaaat cgacaaacgc tttgcgctga
    55021 tcgccttctt tatcaaaaca cccgctcagg ctaaacacca ttaataacgc cacaacaggc
    55081 gcaaaccagc gagagcagga cttacctgtc gccattgtta atactccttt cacccaaaaa
    55141 tgcgcacaac gacacctgcg tgcctgacgg cttacaagga tagtccaggt caggcttgca
    55201 ggataccctt tccacgcgat cttgtagcgg aaaattatgt ttatctgcat caatgcttaa
    55261 tttattattt tattgttaat ttttaacctg acactgcgat aaaaaacgcg g
//
LOCUS       DAJVSD010000003        53156 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.003, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000003 DAJVSD010000000
VERSION     DAJVSD010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 53156)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 53156)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..53156
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.003"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(18..497)
                     /gene="folK"
                     /locus_tag="OQP62_000105"
     CDS             complement(18..497)
                     /gene="folK"
                     /locus_tag="OQP62_000105"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000150775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HCS1719761.1"
                     /translation="MTIAYIALGSNLASPLEQVNAALKAIADIPDSRIVAVSSFYRTP
                     PLGPQDQPDYLNAAVALDTALAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLF
                     GDEVINTDRLTVPHYDMKNRGFMLWPLFEIAPELVFPDDKGLLIELMSQMSPCPDRW"
     gene            complement(494..1912)
                     /gene="pcnB"
                     /locus_tag="OQP62_000106"
     CDS             complement(494..1912)
                     /gene="pcnB"
                     /locus_tag="OQP62_000106"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HCS1719762.1"
                     /translation="MTLPRCAIFTRVANFCRKVLSREESEAEQAVARPHMTIIPREQH
                     AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKL
                     FRNCRLVGRRFRLAHVMFGPEIIEVATFRGHNEGSESDRTTSQRGQNGMLLRDNIFGS
                     IEEDAQRRDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLR
                     AVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREY
                     HLFQPLFPTITRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLL
                     EMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQG
                     KRAWKLMEHPKFRAAFDLLELRAQVENNTELQRLAQWWAEFQASAPPEQKGMLNELDD
                     DPAPRRRRSRPRKRAPRREGTV"
     gene            complement(2053..2949)
                     /gene="gluQRS"
                     /locus_tag="OQP62_000107"
     CDS             complement(2053..2949)
                     /gene="gluQRS"
                     /locus_tag="OQP62_000107"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HCS1719763.1"
                     /translation="MTDSHYIGRFAPSPSGELHFGSLIAALGSYLQARAQRGVWRVRI
                     EDIDPPREVPGAAATILRQLEHYGLHWDGEVLWQSQRHEAYREALAWLHEQGLSYYCT
                     CPRSRIQRLGGIYDGHCRTLCHGPENAAVRIKQQHPVMHFHDALRGDIQADPQLASED
                     FIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQLSLYKQFGWRAPGYVHL
                     PLALNEQGAKLSKQNHAPALATGDPRPVLVQALRFLGQRDVVAWQEMSVEELLRFAVA
                     HWRLTAVPTSANVNPAFSNASR"
     gene            complement(3018..3473)
                     /gene="dksA"
                     /locus_tag="OQP62_000108"
     CDS             complement(3018..3473)
                     /gene="dksA"
                     /locus_tag="OQP62_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002209354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HCS1719764.1"
                     /translation="MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLSHFKRIL
                     EAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKT
                     LKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG"
     gene            complement(3650..4354)
                     /gene="sfsA"
                     /locus_tag="OQP62_000109"
     CDS             complement(3650..4354)
                     /gene="sfsA"
                     /locus_tag="OQP62_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HCS1719765.1"
                     /translation="MLFSPPLQRATLIQRYKRFLADVITPDGTTLTLHCPNTGAMTGC
                     ATPGDTVWYSTSENTKRKYPHTWELTETQSGAFICVNTLRANQLTKEAIQENRLPALA
                     GYNILNSEVKYGAERSRIDFMLQADFRPDCYIEVKSVTLAEKENGYFPDAITERGQKH
                     LRELMGVAAAGHRAVVVFAVLHSAITRFSPARHIDIKYAQLLSEAQNKGVEVLAYKAE
                     LSATKMELNEPVPITL"
     gene            complement(4371..4901)
                     /gene="thpR"
                     /locus_tag="OQP62_000110"
     CDS             complement(4371..4901)
                     /gene="thpR"
                     /locus_tag="OQP62_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HCS1719766.1"
                     /translation="MSEPKRLFFAIDLPDDARAQIIAWRAAHFASEDGRPVAAANLHL
                     TLAFLGDVSNDKQRALAQLAGRIRQPGFTLHLDDAGQWLRSRVVWLGMRQPPRGLLQL
                     ANMLRAQAARSGCYQSPQPFHPHITLLRDASHTVAIPPPGFCWSFPVTSFALYASSYG
                     QGRTRYAELQRWTLGE"
     gene            4974..7403
                     /gene="hrpB"
                     /locus_tag="OQP62_000111"
     CDS             4974..7403
                     /gene="hrpB"
                     /locus_tag="OQP62_000111"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase HrpB"
                     /protein_id="HCS1719767.1"
                     /translation="MTSLPVAAVLPELLTALKTAPQVLLSAPTGAGKSTWLPLQLLQQ
                     GPVAGKILLLEPRRLAARNVAQRLAEALNEKPGETVGYRMRAQSCVGPRTRLEVVTEG
                     VLTRMIQRDPELRGVGLVILDEFHERSLQADLALALLLDIQQGLRDDLRLLIMSATLD
                     NDRLCQRLPDAPTIVSEGRAFPVERRYQPLAAHLRFDEAVAMATAELLRNENGSLLLF
                     LPGVGEIQRVHEHLASRVGSDVLLCPLYGALSLEAQRKAIVPAPAGMRKVVLATNIAE
                     TSLTIEGIRLVVDSAQERVARFDARTGLTRLVTQRISQASMTQRAGRAGRLAPGICLH
                     LLAKEQAERAAAQSDPEILHSDLSGLLMEVLQWGCHDPASLFWLDRPPEVNLQAARRL
                     LLMLGALEGERLSARGRKMAATGNDPRLAAMLVNADEGDSAATAAMLAAILEDPPRGG
                     GTDLSVLFSRRQPGWQQRSQQLLKRLQVRNGEPDSALIMPLLARAFSDRIARRRGQEG
                     RYQLANGMGAMLDADDALGRHEWLIAPLLLQGSASPDARILLAQPLDIASLIQACPDL
                     LRQSDTVEWDEAQGTLKAWRRMRIGQLTVSVQPLAKPSEEELHQAMLNGIRDKGLSVL
                     NWTPEAEQFRLRLHCAAKWLPEYDWPAVDEASLLATLENWLLPHMTGVQSLRSLKSLN
                     VTQALRGLLDYAMLQRLDSELPGHYTVPTGSRITIRYHEDNPPALAVRMQEMFGEAST
                     PTLAQGRVPLVLELLSPAQRPLQITRDLSAFWQGAYREVQKEMKGRYPKHVWPDDPAN
                     TAPTRRTKKYS"
     gene            7544..10066
                     /gene="mrcB"
                     /locus_tag="OQP62_000112"
     CDS             7544..10066
                     /gene="mrcB"
                     /locus_tag="OQP62_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glycosyl
                     transferase/transpeptidase"
                     /protein_id="HCS1719768.1"
                     /translation="MAGNDREPIGRKGKPSRPVKQKVSRRRQHDDDYDDDYEDEEPMP
                     RKGKGKGRKPRGKRGWLWLLLKLFIVFVVLFAIYGVYLDQKIRSRIDGKVWQLPAAVY
                     GRMVNLEPDMPVSKNEMVKLLEATQYRLVTKMTRPGEFTVQANSIEMIRRPFDFPDSK
                     EGQVRARLTFSDGRLETIVNLDNNRQFGFFRLDPRLITMLSSPNGEQRLFVPRSGFPD
                     LLVDTLLATEDRRFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSE
                     RSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPV
                     EELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQKIIDQELYDMLSAR
                     PLGVQPRGGVISPQPAFMQMVRQELQAKLGDKIKDLSGVKIFTTFDSVAQDAAEKAVV
                     EGIPALKKQRKLSDLETAMVVVDRFSGEVRAMVGGAEPQYAGYNRAMQARRSIGSLAK
                     PATYLTALSQPNLYRLNTWIADAPISLRQPNGQVWSPENDDRRYSESGKVMLVDALTR
                     SMNVPTVNLGMALGLPAVTDTWTKLGVPKDQLNPVPAMLLGALNLTPIEVAQAFQTIA
                     SGGNRAPLSALRSVIAEDGKVLYQSYPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLG
                     AKYPGLHLVGKTGTTNNNVDTWFAGIDGSQVTITWVGRDNNQPTKLYGASGAMAIYQR
                     YLANQTPTPLVLTPPEDVVDMGVDYDGNFVCNGGMRTLPVWTDDPNTLCQQGEMMQQQ
                     QQPSGNPFDQSSQPQQPAQQQPPKEEKSDGVAGWIKEMFGGN"
     gene            10359..12550
                     /gene="fhuA"
                     /locus_tag="OQP62_000113"
                     /pseudo
     CDS             10359..12550
                     /gene="fhuA"
                     /locus_tag="OQP62_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459196.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ferrichrome porin FhuA"
     gene            12599..13396
                     /gene="fhuC"
                     /locus_tag="OQP62_000114"
     CDS             12599..13396
                     /gene="fhuC"
                     /locus_tag="OQP62_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe3+-hydroxamate ABC transporter ATP-binding
                     protein FhuC"
                     /protein_id="HCS1719769.1"
                     /translation="MQENHIHSDTTFALRSVAFRVPGRTLLHPLSLTFPAGRVTGLIG
                     HNGSGKSTLLKMLGRHQLPSEGDILLDNQPLASWSSKAFARKVAYLPQQLPQAEGMTV
                     RELVAIGRYPWHGALGRFGVADREKVDEAITLVGLKPLAHRLVDSLSGGERQRAWIAM
                     LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQQRGLTVVAVLHDINMAARYCDYL
                     VALRGGEMIAQGTPAELMRSDTLEQIYGIPMGILPHPAGAAPVSFVY"
     gene            13396..14286
                     /gene="fhuD"
                     /locus_tag="OQP62_000115"
     CDS             13396..14286
                     /gene="fhuD"
                     /locus_tag="OQP62_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter
                     substrate-binding protein FhuD"
                     /protein_id="HCS1719770.1"
                     /translation="MRELYPLTRRRLLTAMALSPLLWQMNTAQAAAIDPRRIVALEWL
                     PVELLLALGITPYGVADVPNYKLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVW
                     SAGYGPSPEKLARIAPGRGFDFSDGKKPLAVARRSLVELAQTLNLEAAAEKHLAQYDR
                     FIASQKPRFIRRGGRPLLMTTLIDPRHMLVLGPNCLFQEVLDEYGIVNAWQGETNFWG
                     STAVSIDRLAMYKEADVICFDHGNSTDMNALMATPLWQAMSFVRAGRFHRVPAVWFYG
                     ATLSTMHFVRILNNVLGGKA"
     gene            14301..16340
                     /gene="fhuB"
                     /locus_tag="OQP62_000116"
     CDS             14301..16340
                     /gene="fhuB"
                     /locus_tag="OQP62_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016504759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter permease
                     FhuB"
                     /protein_id="HCS1719771.1"
                     /translation="MPDGGAKNALTDLRFGRFVGRIRRSRHPALLLLALLVAACWLTW
                     VNFSVALPRSQWQQAIWSPDIDIIEQMIFHYSQLPRLAISLLVGAGLGLVGVLFQQVL
                     RNPLAEPTTLGVATGAQLGITVTTLWAIPGALTTQFAALTGACIVGALVFGVAWGKRL
                     SPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWSTGTLTQTDWSGVQRLWPQLL
                     GGVMLTLLLLRPMTLMGLDDGVARNLGLALSLARLAALSLAIVLSALLVNAVGIIGFI
                     GLFAPLLAKMLGARRLLARLMLAPLIGALILWLSDQIILWLTRVWMEVSTGSVTALIG
                     APLLLWLLTRLKSMSAPDMNASDRVAAERRHVLTFAVAGGALLLLATWVALSFGRDAH
                     GWTWASGTLLEELMPWRWPRILAALMAGVMLAVAGCIIQRLTGNPMASPEVLGISSGA
                     AFGVVLMLFLVPGNAFGWLLPAGSLGAAATLLIIMIAAGRGGFSPQRMLLAGMALSTA
                     FTMLLMMLQASGDPRMADVLTWISGSTYNATGGQVTRTAIVMVILLAVVPLCRRWLTI
                     LPLGGDAARAVGIALTPSRIALLALAACLTATATMTIGPLSFVGLMAPHIARMLGFRR
                     TMPHMVISALAGGVLLVFADWCGRMALFPYQIPAGLLSSFIGAPYFIYLLRKQSR"
     gene            complement(16431..17711)
                     /gene="hemL"
                     /locus_tag="OQP62_000117"
     CDS             complement(16431..17711)
                     /gene="hemL"
                     /locus_tag="OQP62_000117"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HCS1719772.1"
                     /translation="MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYL
                     YDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAELVTNL
                     VPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTL
                     GQPNSPGVPADFAKHTLTCTYNDLTSVRAAFEQYPQEIACIIVEPVAGNMNCVPPLPE
                     FLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAF
                     GGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGIHETLDELTTRLAEG
                     LLEAAEEANIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVY
                     LAPSAFEAGFMSVAHSMDDINNTIDAARRVFAKL"
     gene            17881..19302
                     /gene="clcA"
                     /locus_tag="OQP62_000118"
     CDS             17881..19302
                     /gene="clcA"
                     /locus_tag="OQP62_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H(+)/Cl(-) exchange transporter ClcA"
                     /protein_id="HCS1719773.1"
                     /translation="MKTDTSTFLAQQIVRLRRRDQIRRLMQRDKTPLAILFMAAVVGT
                     LTGLVGVAFEKTVSWVQNMRIGALVQVADHAFLLWPLAFILSALLAMVGYFLVRKFAP
                     EAGGSGIPEIEGALEELRPVRWWRVLPVKFIGGMGTLGAGMVLGREGPTVQIGGNLGR
                     MVLDVFRMRSAEARHTLLATGAAAGLSAAFNAPLAGILFIIEEMRPQFRYNLISIKAV
                     FTGVIMSSIVFRIFNGEAPIIEVGKLSDAPVNTLWLYLILGIIFGCVGPVFNSLVLRT
                     QDMFQRFHGGEIKKWVLMGGAIGGLCGILGLIEPAAAGGGFNLIPIAAAGNFSVGLLL
                     FIFITRVVTTLLCFSSGAPGGIFAPMLALGTLLGTAFGMAAAVLFPQYHLEAGTFAIA
                     GMGALMAASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQFLGGKPLYSTILA
                     RTLAKQDAEQAAKNQNAPAGENT"
     gene            19384..19728
                     /gene="erpA"
                     /locus_tag="OQP62_000119"
     CDS             19384..19728
                     /gene="erpA"
                     /locus_tag="OQP62_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HCS1719774.1"
                     /translation="MSDDVALPLQFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSG
                     FQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNA
                     KSTCGCGSSFSI"
     gene            complement(19829..20452)
                     /locus_tag="OQP62_000120"
     CDS             complement(19829..20452)
                     /locus_tag="OQP62_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRIC cation channel family protein"
                     /protein_id="HCS1719775.1"
                     /translation="MLVYWLDIVGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGG
                     TIRDMALDNGPVFWVKDPTDLVVAMVTSMLTILLVRQPRRLPKWMLPVLDAVGLAVFV
                     GIGVNKAFLAETGPLVAVCMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIV
                     HATAFYTFSVPLESASMMGMVVTLFIRLAAIRWHLKLPTFALDENGR"
     gene            complement(20489..21289)
                     /gene="btuF"
                     /locus_tag="OQP62_000121"
     CDS             complement(20489..21289)
                     /gene="btuF"
                     /locus_tag="OQP62_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter substrate-binding
                     protein BtuF"
                     /protein_id="HCS1719776.1"
                     /translation="MAKQMFRALGALLLTLPVWLYAAPRVITLSPANTELAFAAEITP
                     VGVSSYSDYPPEAQKIEQVSTWQGMNLERIVALKPDLVVAWRGGNAERQVNQLTSLGI
                     KVMWVDAVTIEQIADALRQLAAWSPQPEKAQQAAQTLLKEYAALKVEYAGKAKKRVFL
                     QFGMNPLFTSGKGSIQHQVLTTCGGENVFADSRVPWPQVSREQVLARHPQAIIVAGKA
                     GEILKIEQYWGNLLKIPVIPLNSDWFERASPRIILAAKQLCNALSQVN"
     gene            complement(21282..21980)
                     /gene="mtnN"
                     /locus_tag="OQP62_000122"
     CDS             complement(21282..21980)
                     /gene="mtnN"
                     /locus_tag="OQP62_000122"
                     /EC_number="3.2.2.16"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HCS1719777.1"
                     /translation="MKIGIIGAMEEEVTLLRDKIDNRQTITLGGCEIYTGQLNGTEVA
                     LLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLASTLKVGDIVVSDEARYHDADV
                     TAFGYEYGQLPGCPAGFKADDKLIAAAESCIRELNLNAVRGLIVSGDAFINGSVGLAK
                     IRHNFPDAVAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQS
                     TLMVETLVQKLAHG"
     gene            22065..23582
                     /gene="dgt"
                     /locus_tag="OQP62_000123"
     CDS             22065..23582
                     /gene="dgt"
                     /locus_tag="OQP62_000123"
                     /EC_number="3.1.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dGTPase"
                     /protein_id="HCS1719778.1"
                     /translation="MASIDFRNKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPA
                     IRRLQQKTQVFPLERNAAVRTRLTHSMEVQQVGRYIAKEILSRLKEQNRLEEYGLDAL
                     TGPFESIVEMACLMHDIGNPPFGHFGEAAINDWFRQRLHPEDAESQPLTHDRCVVSSL
                     RLQEGEENLNDIRRKVRQDICHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWW
                     RGPVPDSHRYLMKKPGYYLSEEKYIARLRKELQLAPYSRFPLTWIMEAADDISYCVAD
                     LEDAVEKRIFSVEQLYHHLYHAWGHHEKDSLFELVVGNAWEKSRANTLSRSTEDQFFM
                     YLRVNTLNKLVPYAAQRFIDNLPQIFAGTFNQALLEDASGFSRLLELYKNVAVEHVFS
                     HPDVEQLELQGYRVISGLLDIYQPLLSLSLNDFRELVEKERLKRFPIESRLFQKLSTR
                     HRLAYVEVVSKLPTDSAEYPVLEYYYRCRLIQDYISGMTDLYAWDEYRRLMAVEQ"
     gene            23712..25139
                     /gene="degP"
                     /locus_tag="OQP62_000124"
     CDS             23712..25139
                     /gene="degP"
                     /locus_tag="OQP62_000124"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endoprotease DegP"
                     /protein_id="HCS1719779.1"
                     /translation="MKKTTLAMSALALSLGLALSPLSATAAETSSSAMTAQQMPSLAP
                     MLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQDGSPFQNSPFCQGGGNG
                     GNGGQQQKFMALGSGVIIDAAKGYVVTNNHVVDNASVIKVQLSDGRKFDAKVVGKDPR
                     SDIALIQIQNPKNLTAIKLADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLN
                     VENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKN
                     LTSQMVEYGQVKRGELGIMGTELSSELAKAMKVDAQRGAFVSQVMPNSSAAKAGIKAG
                     DVITSLNGKPISSFAALRAQVGTMPVGSKISLGLLREGKAITVNLELQQSSQSQVDSS
                     TIFSGIEGAEMSNKGQDKGVVVSSVKANSPAAQIGLKKGDVIIGANQQPVKNIAELRK
                     ILDSKPSVLALNIQRGDSSIYLLMQ"
     gene            25292..26449
                     /gene="cdaR"
                     /locus_tag="OQP62_000125"
     CDS             25292..26449
                     /gene="cdaR"
                     /locus_tag="OQP62_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CdaR"
                     /protein_id="HCS1719780.1"
                     /translation="MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERI
                     GELHEGALLVLSQGRVVDIDNAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPEHLR
                     KYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALVEWAQRLGIDL
                     NQPRVAAVVEVDSGQLGVDSAMAELQQLQNALTTPERNNLIAIVSLTEMVVLKPALNS
                     FGRWDAEDHRKRVEQLISRMKENGQLRFRVALGNYFTGPGSIARSYRTARTTMMVGKQ
                     RMPESRSYFYQDLMLPVLLDSLRGGWQANELARPLVKLKAMDNNGLLRRTLTAWFRHN
                     VQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEQR"
     gene            complement(26538..26924)
                     /locus_tag="OQP62_000126"
     CDS             complement(26538..26924)
                     /locus_tag="OQP62_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000272186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3461 family protein"
                     /protein_id="HCS1719781.1"
                     /translation="MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDRGEFFAK
                     SVKFKYPRQRKTVVADGIGQGYKEVQEISPNLRYVIDELDQICQRDRSELDLKRKILD
                     DLRHLESVVANKISEIEADLDKLTRK"
     gene            27171..28473
                     /locus_tag="OQP62_000127"
                     /pseudo
     CDS             27171..28473
                     /locus_tag="OQP62_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459217.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
     gene            complement(28510..29334)
                     /gene="dapD"
                     /locus_tag="OQP62_000128"
     CDS             complement(28510..29334)
                     /gene="dapD"
                     /locus_tag="OQP62_000128"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HCS1719782.1"
                     /translation="MQQLQNVIETAFERRADITPANVDTVTREAVKQVISLLDSGALR
                     VAEKIDGQWVTHQWLKKAVLLSFRINDNQVIDGAESRYFDKAPMKFADYDEARFQKEG
                     FRVVPPAAVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG
                     GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTKIYDRE
                     TGEVHYGRVPAGSVVVSGNLPSKDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID"
     gene            complement(29364..32036)
                     /gene="glnD"
                     /locus_tag="OQP62_000129"
     CDS             complement(29364..32036)
                     /gene="glnD"
                     /locus_tag="OQP62_000129"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein GlnD"
                     /protein_id="HCS1719783.1"
                     /translation="MNTLPEQHANTALPTLPDQPQNPGVWPRAELTVAGIKARIDIFQ
                     HWLGEAFDSGICAEQLIEARTEFIDQLLQRLWIEAGFGQIADLALVAVGGYGRGELHP
                     LSDIDLLILSRKKLPDEQAQKVGELLTLLWDVKLDVGHSVRTLEECLLEGLSDLTVAT
                     NLIETRLLIGDVALFLALQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPD
                     IKSSPGGLRDIHTLQWVARRHFGATSLDEMVGFGFLTPAECAELNECLHILWRIRFAL
                     HLVVSRYDNRLLFDRQLSVAQRLNYSGEGNDPVERMMKDYFRVTRRVSELNQMLLQLF
                     DEAILALPADEKPRPVDDEFQLRGTLIDLRDDTLFIREPQAILRMFYMMVRNSAITGI
                     YSTTLRHLRHARRHLSQPLCYIPEARTLFLSMLRHPGAVSRGLLPMHRHSVLWAYMPQ
                     WSHIVGQMQFDLFHAYTVDEHTIRVMLKLESFAKEETRQRHPLCVDLWPRLPHPELIL
                     IAALFHDIAKGRGGDHSVLGAQDVLTFAELHGLNSRETQLVAWLVRQHLLMSVTAQRR
                     DIQDPEVIKQFAEEVQTETRLRFLVCLTVADICATNETLWNSWKQSLLRELYFATEKQ
                     LRRGMQNTPDMRERVRHHQLQALALLRMDNIDEAALHKIWTRCRANYFVRHSPNQLAW
                     HARHLLQHDLSQPLVLLSPQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQI
                     FTTRDGMAMDTFIVLEPDGSPLAADRHDVIRTGLEQTITQHSWQPPQPRRQPAKLRHF
                     TVETEVNFLPTHTDRKSFMELIALDQPGLLARVGQIFADLGISLHGARITTIGERVED
                     LFIIATADRRALNNVLQLEVQQRLTAALNPNDKG"
     gene            complement(32149..32943)
                     /gene="map"
                     /locus_tag="OQP62_000130"
     CDS             complement(32149..32943)
                     /gene="map"
                     /locus_tag="OQP62_000130"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HCS1719784.1"
                     /translation="MAISIKTSEDIEKMRVAGRLAAEVLEMIEPYIKPGVTTGELDRI
                     CNDYIVNEQHAISACLGYHGYPKSVCISINEVVCHGIPDDAKHLKDGDIVNIDVTVIK
                     DEFHGDTSKMFIVGKPTILGERLCRVTQESLYLGIKMVKPGIRLRTIGAAIQKYAEGE
                     GFSVVREYCGHGIGRGFHEEPQVLHYDADDGGVVLQPGMTFTIEPMLNAGDYRIRTMK
                     DGWTVKTKDRSLSAQYEHTIVVTENGCEILTLRKDDTIPAIITHDE"
     gene            33393..34118
                     /gene="rpsB"
                     /locus_tag="OQP62_000131"
     CDS             33393..34118
                     /gene="rpsB"
                     /locus_tag="OQP62_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HCS1719785.1"
                     /translation="MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLE
                     KTVPMFNEALAELNKISARKGKILFVGTKRAASEAVKEAANSCDQFFVNHRWLGGMLT
                     NWKTVRQSIKRLKDLETQSQDGTFEKLTKKEALMRTRELEKLENSLGGIKDMGGLPDA
                     LFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVSLYLGAVA
                     ATVREGRSQDLASQAEESFVEAE"
     gene            34376..35227
                     /gene="tsf"
                     /locus_tag="OQP62_000132"
     CDS             34376..35227
                     /gene="tsf"
                     /locus_tag="OQP62_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HCS1719786.1"
                     /translation="MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKS
                     GAIKAAKKAGNVAADGVIKTKIDGNVAFILEVNCQTDFVAKDAGFQAFADKVLDAAVA
                     GKITDVEVLKAQFEEERVALVAKIGENINIRRVASLEGDVLGSYQHGARIGVLVAAKG
                     ADEELVKQLAMHVAASKPEFVKPEDVSADVVEKEYQVQLDIAMQSGKPKEIAEKMVEG
                     RMKKFTGEVSLTGQPFVMEPSKSVGQLLKEHNADVTGFIRFEVGEGIEKVETDFAAEV
                     AAMSKQS"
     gene            35372..36097
                     /gene="pyrH"
                     /locus_tag="OQP62_000133"
     CDS             35372..36097
                     /gene="pyrH"
                     /locus_tag="OQP62_000133"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000224576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HCS1719787.1"
                     /translation="MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKEL
                     VELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNA
                     RLMSAIPLNGVCDNYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADV
                     VLKATKVDGVFTADPAKDPSATMYDQLTYSEVLDKELKVMDLAAFTLARDHKLPIRVF
                     NMNKPGALRRVVMGEKEGTLITE"
     gene            36244..36801
                     /gene="frr"
                     /locus_tag="OQP62_000134"
     CDS             36244..36801
                     /gene="frr"
                     /locus_tag="OQP62_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000622421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HCS1719788.1"
                     /translation="MISDIRKDAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEY
                     YGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPL
                     PPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEV
                     QKMTDAAIKKVDAALADKEAELMQF"
     gene            36943..38139
                     /gene="ispC"
                     /locus_tag="OQP62_000135"
     CDS             36943..38139
                     /gene="ispC"
                     /locus_tag="OQP62_000135"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HCS1719789.1"
                     /translation="MKQLTILGSTGSIGCSTLDVVHHNPDSFRVIALVAGKNVARMAE
                     QCLEFSPRYAVMDDTSSAEQLKIMLQQHGSRTEVLSGQQAACEMAALDEVGHVMAAIV
                     GAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDEVKRSNARLLPVDSEHNAIFQSL
                     PQSIQHNLGYADLEQNGVTSILLTGSGGPFRETPMCDLAAMTPDQACRHPNWSMGRKI
                     SVDSATMMNKGLEYIEARWLFNASARQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDM
                     RTPIAHTMAWPNRVTSGAQPLDFCKLSALTFSAPDYQRYPCLKLAMEAFEQGQAATTA
                     LNAANEITVAAFLAQQIRFTDIAGLNLAVLERMDLHEPASVDDVLQVDAIAREVARKQ
                     VIRLSR"
     gene            38452..39210
                     /gene="ispU"
                     /locus_tag="OQP62_000136"
                     /gene_synonym="uppS"
     CDS             38452..39210
                     /gene="ispU"
                     /locus_tag="OQP62_000136"
                     /gene_synonym="uppS"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl-diphosphate-specific
                     ditrans,polycis-undecaprenyl-diphosphate synthase"
                     /protein_id="HCS1719790.1"
                     /translation="MLSATQPVSENLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKA
                     GAKSVRRAVSFAANNGIDALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRH
                     NVRLRIIGDISRFNSRLQERIRKSEALTAHNTGLTLNIAANYGGRWDIVQGVRQLAEL
                     VQAGVLRPDQIDEERLGQQICMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDV
                     LWPDFDEQDFEGALHAFANRERRFGGTEPGDDKA"
     gene            39223..40080
                     /gene="cdsA"
                     /locus_tag="OQP62_000137"
     CDS             39223..40080
                     /gene="cdsA"
                     /locus_tag="OQP62_000137"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HCS1719791.1"
                     /translation="MLKYRLISAFVLIPAVIAALFLLPPVGFAIITLVVCMLAAWEWG
                     QLSGFAARSQRVWLAVLCGLLLALMLFLLPEYHHNIRQPLVEMSLWASLGWWVVALLL
                     VLFYPGSAAIWRNSKTLRLIFGLLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMIL
                     VWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLNVAPV
                     ILLICSVVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFAC
                     LLLLVFRTL"
     gene            40092..41444
                     /gene="rseP"
                     /locus_tag="OQP62_000138"
     CDS             40092..41444
                     /gene="rseP"
                     /locus_tag="OQP62_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma E protease regulator RseP"
                     /protein_id="HCS1719792.1"
                     /translation="MLSILWNLAAFIIALGVLITVHEFGHFWVARRCGVRVERFSIGF
                     GKALWRRTDRYGTEYVIALIPLGGYVKMLDERAEPVAPELRRHAFNNKTVGQRAAIIA
                     AGPVANFIFAIFAYWLVFIIGVPGVRPVIGEITPNSIAAQAQIAPGTELKAVDGIETP
                     DWDAVRLQLVSKIGDQQTTVSVAPFGSDQRQDKTLDLRHWAFEPDKQDPVSSLGIRPR
                     GPQIEPVLSEVQANSAASKAGLQAGDRIVKVDGQPLTQWMKFVTFVRDNPGKPLALEI
                     ERQGSALSLTLTPDTKSVNGKAEGFAGVVPKIIPLPEEYKTIRQYGPFSAILEATDKT
                     WQLMKLTVNMLGKLITGDVKLNNLSGPISIAQGAGMSAEFGVIYYLMFLALISVNLGI
                     INLFPLPVLDGGHLLFLAIEKLKGGPVSERVQDFSYRIGSILLVLLMGLALFNDFSRL
                     "
     gene            41476..43887
                     /gene="bamA"
                     /locus_tag="OQP62_000139"
     CDS             41476..43887
                     /gene="bamA"
                     /locus_tag="OQP62_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HCS1719793.1"
                     /translation="MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALL
                     SMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGNTLLVQVKERPTIASITFSGN
                     KSVKDDMLKQNLEASGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPR
                     NRVDLKLVFQEGVSAKIQQINIVGNHAFSTEELISHFQLRDEVPWWNVVGDRKYQKQK
                     LAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGN
                     LAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSQPEINDADKT
                     VKLRVNVDAGNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRL
                     GFFETVDTDTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWL
                     GTGYSVGINGTKNDYQTYSELSVTNPYFTVDGVSLGGRIFYNDFEADDADLSDYTNKS
                     YGTDVTLGFPINEYNTLRAGLGYVHNKLSNMQPQIAMDRYLESMGDPDASDFAADDFT
                     FNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVSLDTATYVPIDNDHKWVV
                     LGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYKNGAHTSWDDDDD
                     YEDCTQESGCKSDDAVGGNAMAVASLEFITPTPFISEKYANSVRTSFFWDMGTVWDTN
                     WDPSSAPSDVPDYSDPGNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFN
                     IGKTW"
     gene            44010..44495
                     /gene="skp"
                     /locus_tag="OQP62_000140"
                     /gene_synonym="hlpA"
                     /gene_synonym="ompH"
     CDS             44010..44495
                     /gene="skp"
                     /locus_tag="OQP62_000140"
                     /gene_synonym="hlpA"
                     /gene_synonym="ompH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone Skp"
                     /protein_id="HCS1719794.1"
                     /translation="MKKWLLAAGLGLAMVTSAQAADKIAIVNMGNLFQQVAQKTGVSN
                     TLENEFKGRAAELQKMETDLQSKMQRLQSMKAGSDRTKLEKDVMSQRQTFAQKAQAFE
                     KDRARRSNEERNKLVTRIQTAVKKVANDQSIDLVVDANTVAYNSSDVKDITADVLKQV
                     K"
     gene            44499..45524
                     /gene="lpxD"
                     /locus_tag="OQP62_000141"
     CDS             44499..45524
                     /gene="lpxD"
                     /locus_tag="OQP62_000141"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HCS1719795.1"
                     /translation="MPSIRLADLAEQLDAELHGDGDIVITGVASMQSATTGHITFMVN
                     PKYREHLGLCQASAVVMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAP
                     SAVIDATATLGSNVSVGANAVIESGVQLGDNVVIGAGCFVGKNSKIGAGSRLWANVTI
                     YHDIQIGENCLIQSSTVIGADGFGYANDRGNWVKIPQLGRVIIGDRVEIGACTTIDRG
                     ALDDTVIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGH
                     MEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKAIE
                     RKVNQQD"
     gene            45630..46085
                     /gene="fabZ"
                     /locus_tag="OQP62_000142"
     CDS             45630..46085
                     /gene="fabZ"
                     /locus_tag="OQP62_000142"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000210741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HCS1719796.1"
                     /translation="MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNV
                     SVNEPFFQGHFPGKPILPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFK
                     RPVVPGDQMIMEVTFEKTRRGLTRFKGVALVDGKVVCEATMMCARSREA"
     gene            46089..46877
                     /gene="lpxA"
                     /locus_tag="OQP62_000143"
     CDS             46089..46877
                     /gene="lpxA"
                     /locus_tag="OQP62_000143"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HCS1719797.1"
                     /translation="MIDKSVFIHPTAIVEDGAVIGANAHIGPFCIVGPQVEIGEGTVL
                     KSHVVVNGQTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGT
                     VQGGGLTKVGSDNLLMINAHVAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVH
                     QFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREGLVAIRNA
                     YKLLYRSGKTLDEAKLEIAELAEKHPEVKAFTEFFERSTRGPIR"
     gene            46877..48025
                     /gene="lpxB"
                     /locus_tag="OQP62_000144"
     CDS             46877..48025
                     /gene="lpxB"
                     /locus_tag="OQP62_000144"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HCS1719798.1"
                     /translation="MAAQRPLTIALVAGETSGDILGAGLIRALKARVPNARFVGVAGP
                     RMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTRRFTELKPDVFVGIDAPDF
                     NITLEGNLKKQGIKTIHYVSPSVWAWRQKRVFKIGRSTHMVLAFLPFEKAFYDKFNVP
                     CRFIGHTMADAMPLDPDKNAARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQL
                     LRQRYPDLEVVVPLVNAKRREQFEKIKAEVAPDLAVHLLDGMAREAMIASDAALLASG
                     TAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTEYVSLPNLLAGRELVKELLQEECEP
                     QKLAEALLPLLANGKTSHAMHDTFRELHQQIRCNADEQAADAVLELAQ"
     gene            48022..48618
                     /gene="rnhB"
                     /locus_tag="OQP62_000145"
     CDS             48022..48618
                     /gene="rnhB"
                     /locus_tag="OQP62_000145"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HCS1719799.1"
                     /translation="MIEFVYPHTHLVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLN
                     DSKKLSEKRRLSLYDEIKEKALSWSLGRAEAHEIDELNILHATMLAMQRAVAGLHIAP
                     EYVLIDGNRCPELPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAALDIVFPQYGFA
                     QHKGYPTAFHLEKLAQYGATAHHRRSFAPVKRALGLVS"
     gene            48642..52124
                     /gene="dnaE"
                     /locus_tag="OQP62_000146"
     CDS             48642..52124
                     /gene="dnaE"
                     /locus_tag="OQP62_000146"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HCS1719800.1"
                     /translation="MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDF
                     TNLCGLVKFYGAGHGAGIKPIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLIS
                     KAYQRGYGAAGPIIERDWLVELKEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEA
                     HFPDRYFLELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVA
                     IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEY
                     FLPQFPTGDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQ
                     MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL
                     NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG
                     HPYGFVDRISKLVPPDPGMTLAKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNA
                     GKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIN
                     WALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ
                     PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYG
                     IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGEL
                     AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV
                     GLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQG
                     GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK
                     AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKE
                     IERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVML
                     FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISL
                     TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL
                     RGLIGSEQVELEFD"
     gene            52137..53096
                     /gene="accA"
                     /locus_tag="OQP62_000147"
     CDS             52137..53096
                     /gene="accA"
                     /locus_tag="OQP62_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HCS1719801.1"
                     /translation="MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLR
                     EKSVELTRKIFADLGAWQVAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIV
                     GGIARLEGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMEMAERFNMPIITF
                     IDTPGAYPGVGAEERGQSEAIARNLREMSRLNVPVICTVIGEGGSGGALAIGVGDKVN
                     MLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAH
                     RNPEAMAASLKAQLLEDLADLDVLSTDDLKNRRYQRLMSYGYA"
BASE COUNT        11883 a        13418 c        15439 g        12416 t
ORIGIN      
        1 gataataggg gtatttctta ccaacgatcg ggacagggag acatttggga catcagctcg
       61 atcagcagac ctttatcgtc gggaaacacc agctccggag cgatttcgaa taacggccac
      121 agcataaaac cgcggttttt catgtcgtag tgcggcacgg tcagacggtc ggtgttaatg
      181 acttcatcgc caaacagcat aatgtcgaga tccagcgtgc gcggccccca gcgttcggcc
      241 ttgcgcaccc ggccctgttg cagctcaatg cgctgggtat ggttaagcaa ttcttcgggg
      301 gcgagagcgg tatccagcgc caccgcagcg ttcaggtaat cgggctgatc ctgtgggcca
      361 agcggcggcg tgcggtaaaa cgaagaaacc gcgacgatac ggctatcggg aatgtcggcg
      421 atagccttca gggcggcatt gacctgctcc agcggagagg ccagattact gccaagcgcg
      481 atatacgcga tcgtcatacg gtgccctcgc ggcgcggcgc gcgtttgcgc ggacgtgaac
      541 gacggcggcg tggagcagga tcgtcgtcca gctcgttgag catccctttt tgttccggcg
      601 gcgcggaagc ctgaaactcg gcccaccact gcgccagacg ttgcagttca gtattatttt
      661 ccacttgggc gcgcagctcc agcaaatcaa acgcggcgcg gaatttggga tgttccatca
      721 gcttccaggc gcgtttgccc tggcgtcgcg acatacgtaa ctgaagctgc caaatatcac
      781 gggtaagcgt ggtaaggcgt ttcgggatcg ccagtgaacg gcaggcttca tccagcacgt
      841 cattcatggc cagcgcgaaa gcatcgtaat aggcaaggcc gctctcctga gcgatttttt
      901 gcgccatctc cagcagcgga taccagaaca tggcggcaaa caaaaatgcc gggttaacgc
      961 gcatctcgtt acggatgcgg ttatccgtat tcttcaacac ctgcgcaatg atgcgttcca
     1021 ttgcgctgtc gccgttttcg gtgaaataac gcgtaatggt aggaaacaac ggctggaaga
     1081 ggtggtattc ccgcagttgt tgataggttt caaaaccgtt ccccgcctgc aacagcttca
     1141 gcgattcttc gaacaggcgc gcgggaggaa tgtcgtttag caaggttgcc agacgcggga
     1201 ttggctcagc cgtttcaggg ctgatacgca tattgagctt cgcagcgaaa cgcacggcgc
     1261 gcagcattcg aaccggatct tcgcggtagc gcgtttccgg attgccgatc aggcgaatca
     1321 cgccttcttg cagatcctgc atcccgccga cgtaatcgcg cacggtaaaa tccgccacgc
     1381 tgtagtaaag gctgttgatg gtgaaatcgc ggcgctgggc atcttcttcg atagagccga
     1441 agatgttgtc gcgcagcagc ataccgtttt gcccacgctg ggaggtcgta cggtcgcttt
     1501 cactgccttc attatgacca cgaaacgttg ccacttcgat aatttccggg ccaaacatca
     1561 cgtgagccag gcggaaacga cgccccacca gacggcaatt gcggaataat ttccgtacct
     1621 gatccggtgt tgcgttggtg gtcacatcga aatccttcgg ctttttaccg agcaggagat
     1681 cgcggacgcc gccgccgacc aggtaggctt catagcccgc tttgttcagc ctgtacagta
     1741 ccttgagggc attttcactg atatctttgc gggagatagc gtgctgttca cgcgggataa
     1801 tcgtcatatg tggacgggcg acggcttgtt ctgcctcgct ctcctcgcgg cttaacacct
     1861 tacggcaaaa attagcgact cgggtaaaaa tagcgcacct cggtagtgtc atacattaat
     1921 aagatcaact tactctatgt ctttcgcatt acggcagacg ggcgtaagag agcaacgcga
     1981 cctgggctgt aagcatcatt aacgccgcag caatgcgaaa gacgatgagc aaaaatagcg
     2041 gctaatcata gctcagcgag acgcatttga gaatgccgga tttacattag ccgatgtggg
     2101 tacggctgta agcctccagt gcgccaccgc aaagcgcagc aactcctcaa cagacatctc
     2161 ctgccacgct acgacgtcgc gttggcctaa aaagcgcaat gcctggacca gtaccgggcg
     2221 cggatcgcct gtcgcaagcg caggggcatg attttgcttg gaaagtttag cgccttgttc
     2281 gttgagcgcc agcggaaggt gcacgtaacc tggcgcacgc cagccaaact gtttatacag
     2341 cgaaagttgt cggacagtag gttcgattaa atctgcgccg cggacgatct ccgtcacccc
     2401 ctgaaaatga tcgtcgacca ccacggccag gttataagca aacagtccgt cgcggcggtg
     2461 gataataaaa tcttcgctag ccagctgtgg gtcagcctgg atgtcgccgc gcaaggcatc
     2521 atggaaatgc atcactggat gctgctgttt aattctgacg gcggcattct ccggcccgtg
     2581 gcataacgtc cggcaatggc catcgtaaat accgcccaga cgttgaatgc gcgagcgggg
     2641 gcaagtgcag tagtagctca gtccctgctc gtgaagccag gccagcgcct cgcgataagc
     2701 ctcatgacgc tgtgattgcc ataagacctc gccatcccag tgcaggccgt aatgttccag
     2761 ctggcgcaga atggtcgctg cggcaccggg aacttcacgt ggggggtcga tatcctctat
     2821 gcgaacgcgc caaactccgc gttgcgcacg ggcttgtaga tagctgccga gggcggcgat
     2881 taacgagccg aaatgcagtt cgccggatgg cgacggcgcg aaacggccaa tatagtgtga
     2941 gtcagtcatg ctgcgggcaa taaagaataa ggcgggaaaa ctcccgcctg tcataaatag
     3001 ggtagaaacg aacgggatta acccgccatc tgtttttcgc gaatttcagc cagcgttttg
     3061 cagtcgatgc acagatcggc tgttggacgc gcttccaggc ggcggatacc aatctccact
     3121 ccgcaggact cgcaataacc gaagtcttca tcttccactt tcttcagcgt tttctcgatc
     3181 tttttgatca gtttgcgctc acggtcacga ttacgtaact ccaggctaaa ctcctcttcc
     3241 tgcgcggcgc gatcgaccgg atcggggaag ttggcggctt cgtcctgcat gtgcgtcaca
     3301 gtgcgatcga cttcatcccg gagttgatta cgccatgctt caagaatacg cttgaagtgc
     3361 gatagctggg cttcgttcat atactcttcg cccggtttct cctggtacgg ctccacccca
     3421 gcgatggcga gaatactcag ggacgatgtt ttacggtttt gcccttcttg catgttgctt
     3481 ctccttaaca cgcactatcg atccccatgt tcgggggaaa atcaggtcgc tataaatagc
     3541 agatgctttt ccggatagca attatctaaa cgtaacactt gacaaccctg tgaggaaaag
     3601 cgtatttacg cacgcggcca gaatacttaa taatcaggct gttattccac tacaacgtta
     3661 tgggcactgg ttcgttcagt tccatttttg tggctgaaag ttctgcttta taagctaaaa
     3721 cttccacgcc tttattctga gcctcgctca atagctgcgc gtattttata tcgatatgac
     3781 gtgcggggga aaaacgtgta atggcggagt gcagcacagc gaacaccacc accgcgcgat
     3841 gacctgccgc cgcaacgccc atcaactccc gaagatgttt ttgccctcgt tcggtgatgg
     3901 cgtcgggaaa ataaccgttt tctttttccg ctaacgtgac cgatttcact tcaatatagc
     3961 agtccgggcg gaaatctgcc tgtaacataa aatctatacg gctgcgctcg gcgccatatt
     4021 tgacttcact attcagaata ttgtaccccg ccagcgccgg caggcgattc tcctgaatcg
     4081 cttctttcgt tagctggttc gcccgcagcg tattcacgca aatgaatgcg ccggattgcg
     4141 tttcagtcaa ttcccaggta tgcggatatt tgcgtttagt attttctgat gtcgaatacc
     4201 agacggtatc gccaggcgtg gcgcagccag tcatcgcgcc ggtattagga cagtgcagcg
     4261 taagcgtcgt accgtcaggg gtgatgacat cagctaaaaa acgtttatag cgctgaatca
     4321 acgtagcgcg ttgtaaaggg ggtgagaata gcatcgacat tccttgatta ttattcgccc
     4381 agcgtccagc gctgcagctc ggcatagcgg gtacggcctt gcccatacga agaggcgtaa
     4441 agcgcaaacg atgtgaccgg aaatgaccag caaaagcccg gcggcgggat agccaccgta
     4501 tggctggcgt cgcgcagcag cgtaatatgc gggtgaaaag gctgcgggct ttggtaacaa
     4561 ccgctgcggg cggcctgcgc gcgcagcata ttagccaact gcaacaaccc gcgcggcggc
     4621 tggcgcattc ccagccacac aacgcgcgaa cgcaaccact gaccggcgtc atctagatgt
     4681 agcgtaaagc ccggttggcg aattcgtccg gccagttgcg caagcgcgcg ctgcttatcg
     4741 ttactgacgt cgcctaaaaa ggccagcgtc aggtgtaggt tcgccgctgc cacggggcgt
     4801 ccgtcttcag acgcaaaatg ggcggcgcgc caggcgataa tttgcgcgcg cgcgtcgtcg
     4861 ggtaagtcaa tagcaaaaaa cagccgtttt ggctcagaca tagggatact cggttatgga
     4921 ttaacacgat gctacaatgc ggcgcaaaga aagttaaccc cgtggagccg tttgtgacgt
     4981 cattgcccgt tgccgccgta ttgcctgaat tgttgacagc cctaaaaacc gcgccgcagg
     5041 ttttgttgtc cgcgcctacc ggggcgggga aatccacctg gctgccgttg caactcctgc
     5101 aacaggggcc ggttgctgga aaaattctcc tgcttgaacc gcgtcgtctg gcggcgcgta
     5161 atgtcgccca gcgtctggcg gaagcgttga atgaaaagcc tggcgaaacg gtaggttacc
     5221 ggatgcgcgc gcaaagctgc gtggggccgc gtacccggct ggaagtggtg accgaaggcg
     5281 tattgaccag aatgattcag cgcgatcccg aattacgcgg cgtggggctg gtgatactgg
     5341 atgaatttca tgagcgcagt ttacaggcgg atttagcgtt ggcgctgttg ctggatatcc
     5401 agcaagggct ccgtgacgat ctcaggctgt taatcatgtc tgcgacgctg gataacgaca
     5461 ggctttgtca gcgactgcct gatgcgccga cgatcgtctc ggaggggcgc gcgtttcccg
     5521 tggagcgacg ttatcagccg cttgcggcgc atttgcgttt tgatgaagcc gtcgcgatgg
     5581 cgacagcgga actgctgcgc aatgaaaacg gttcgctgct gctattttta cccggcgtag
     5641 gcgaaataca gcgcgttcat gaacatctgg cgtcgcgggt agggagcgat gtcctgcttt
     5701 gtccgctgta tggcgcattg tctctggaag cgcaacgcaa agcgattgtt cccgcacccg
     5761 ccgggatgcg taaagtggta ttggcgacta acattgccga aaccagtttg acgattgaag
     5821 ggattcgtct ggtcgtcgat agcgctcagg agcgcgtggc gcgattcgac gcgcgaacgg
     5881 gactgacgcg gctggttacg cagcgtatca gtcaggcgtc aatgacgcag cgcgcggggc
     5941 gcgccggacg actggcgccg ggtatctgtt tacatctgct ggcaaaagaa caggcggagc
     6001 gggcggcggc gcaaagcgat ccggaaatct tacacagcga cctctccggt ttgttgatgg
     6061 aggtgttgca gtggggatgt cacgatccgg cctcgctttt ctggctggac aggccgccgg
     6121 aggtgaatct tcaggccgcc cgccgtttat tattgatgtt aggcgcgctg gagggcgagc
     6181 gattaagcgc gcgggggcgg aaaatggcgg caacaggtaa cgatccgcgc ctggcggcga
     6241 tgttagtcaa cgccgacgag ggcgacagcg ccgccactgc cgccatgctc gcggccatcc
     6301 ttgaggaccc gccgcgaggc ggcggtacgg atttaagcgt gctattttcg cggcgacagc
     6361 cgggctggca gcagcgtagc cagcagcttt taaaacggct gcaggtgcgt aatggcgagc
     6421 cggatagcgc gcttattatg ccgctgttgg ccagagcgtt tagcgaccgc atcgcgcggc
     6481 gtcgcggtca ggaagggcgc tatcagttag ccaatggtat gggcgcgatg ttagatgcgg
     6541 atgacgcgtt gggacgtcat gaatggctga tcgcgccgct gttactgcaa ggtagcgcct
     6601 cgccggacgc ccgaatattg ttggcgcagc cgctggatat tgcctcgctg attcaggcgt
     6661 gtcctgattt actgcgccag tccgacacgg ttgaatggga cgaggcgcag ggaacgttga
     6721 aagcatggcg cagaatgcgt attggacagt tgacggttag cgttcagcca ctggcgaagc
     6781 cgtctgaaga ggagcttcat caggcgatgc tgaacggcat ccgcgataaa ggtctgtccg
     6841 tccttaactg gacgccggaa gcggagcagt tccgtctgcg tctgcactgt gcggcgaaat
     6901 ggctgccgga atatgactgg cctgccgtgg atgaggcgtc gctgctggcg actctggaaa
     6961 attggttgct gccgcacatg acaggcgtac agtcgttacg gagtctgaaa tctctgaatg
     7021 tgactcaggc gttacgggga ctgcttgact atgccatgct gcaacgtctg gatagtgaac
     7081 tgcctgggca ttacactgtg ccgacgggaa gccgaataac gattcgttat catgaagata
     7141 acccgcccgc gctggcggtc agaatgcagg aaatgttcgg cgaggcaagt acgccgacac
     7201 ttgcgcaggg gcgagtgccg ctggtgctgg aactgctttc gccagcgcag cgaccgctac
     7261 agattacgcg cgatttaagc gctttctggc agggggcgta tcgcgaagtg caaaaagaga
     7321 tgaaggggcg ttaccccaaa catgtctggc cggacgatcc ggcgaatacg gctccaacgc
     7381 ggcgcacgaa gaagtattcg tgacgtgtta tacgttgcct ccaggccgga taaggcgtta
     7441 atcgccatcc ggcaaaaagg taaattgaga gatttcttct tctgtcgtct ggcggaagaa
     7501 tagagaatcg ggcctttgcg cctgtatgtt gcggagaaaa agcatggcgg ggaatgaccg
     7561 cgagccgatt ggacgtaagg ggaaaccgtc acgtcctgtg aaacaaaagg tgagccgtcg
     7621 tcggcagcat gacgacgatt atgatgatga ctatgaggat gaagaaccga tgccgcgtaa
     7681 aggtaagggc aaagggcgta agcctcgtgg caagcgcggc tggctgtggc tattgctaaa
     7741 actgtttatc gtttttgtgg tgctgttcgc catttacggc gtctatctgg atcaaaaaat
     7801 ccgcagccgt attgatggca aggtctggca gcttccggcg gcggtatatg gccggatggt
     7861 gaaccttgag ccagacatgc ctgtcagcaa aaacgagatg gtgaaattgc tggaagcgac
     7921 gcagtatcgt ctggtgacga agatgacccg tcccggcgaa tttaccgtgc aggccaatag
     7981 cattgagatg atccgtcgtc cgtttgactt cccggacagc aaagaagggc aggtgcgcgc
     8041 gcggctgacg ttcagtgacg ggcgtctgga aaccatcgtc aatctggata acaaccgcca
     8101 gtttggcttc ttccgcctcg atccgcggct tatcaccatg ctttcttcgc caaatggcga
     8161 gcagcgttta ttcgtcccgc gcagcggttt cccggatctg ctggtcgata cgctgttggc
     8221 gacggaagac cgtcgtttct atgagcatga tggcattagt ctttactcta tcgggcgtgc
     8281 ggtgctggcc aacctgacgg cgggacgcac ggtgcagggg gccagtacgc tgacccagca
     8341 gctggtgaag aacctgttcc tctccagcga aagatcatac tggcgtaaag cgaatgaagc
     8401 ctacatggcg ctgatcatgg atgcccgtta cagtaaagat cgtattcttg agctgtacat
     8461 gaacgaggtc tacctcggtc aaagcgggga taatgaaatt cgcggttttc cgctggcgag
     8521 cctgtattac tttggtcgtc cggtagagga actgagcctc gatcagcagg cgttactggt
     8581 ggggatggta aaaggggcgt cgatttataa cccgtggcgt aacccgaaac tggcgctgga
     8641 gcgtcgtaac ctagtgttac gcctgttaca gcagcagaaa atcatcgatc aggaactcta
     8701 tgacatgctg agcgcgcgtc cgcttggcgt acagccgcgc ggcggcgtta tttcaccgca
     8761 gccagcgttt atgcagatgg ttcgtcagga actgcaggcg aagctggggg ataaaattaa
     8821 agatctctcc ggcgtgaaga tcttcaccac ctttgactcc gtggcgcagg atgccgcaga
     8881 aaaagccgtt gtcgaaggca ttccggcgtt gaagaagcag cgtaaattga gcgatctgga
     8941 aactgcgatg gtggtagtgg atcgctttag cggcgaggta cgcgcgatgg ttggcggggc
     9001 ggagccgcag tatgctggct ataaccgtgc catgcaggca cgccgttcca tcgggtcgct
     9061 ggcgaaaccg gcgacctatc tgaccgcgtt aagtcagccg aacttatacc gtctgaacac
     9121 ctggattgcc gatgcgccga tttctctgcg ccagccgaat ggtcaggtct ggtcgccgga
     9181 gaacgacgat cgtcgctaca gcgaaagcgg gaaagtgatg ctggtggatg cgttaactcg
     9241 ttcaatgaac gtaccgacgg tcaatctggg gatggcgtta ggtttaccgg cggtaaccga
     9301 tacctggacg aagctcggcg tgccgaaaga tcagctcaat ccggttccgg cgatgctgtt
     9361 aggggcgctg aacctgacgc cgatcgaagt ggcgcaagcg ttccagacta tcgccagcgg
     9421 cggaaatcgc gcgccgttat cagcgctgcg ttcggttatt gcggaagatg gtaaagtgct
     9481 gtaccaaagt tatccgcaag ctgaacgcgc cgtaccggca caggcggctt acctgacgct
     9541 ctggacaatg cagcaggtcg tccagcgtgg tacggggcgt cagcttggcg cgaaatatcc
     9601 gggtctgcat ctggtgggta aaaccgggac gacaaacaac aatgtcgata cctggtttgc
     9661 cggtatcgac ggcagccagg tgactatcac ctgggtaggc cgtgataaca accagccaac
     9721 gaaattgtac ggtgccagcg gcgcgatggc gatttaccag cgctatctgg cgaaccagac
     9781 gccgacgcct ttagttctga cgccgccgga agatgtggtg gatatgggcg ttgattacga
     9841 cggtaatttt gtctgtaacg gcggtatgcg cactctgccg gtctggacgg acgatccaaa
     9901 tacgctgtgc cagcagggcg agatgatgca gcagcaacag cagccgtcag gcaatccgtt
     9961 cgatcagtcg tctcagccgc agcagcctgc gcagcaacag ccgccgaaag aagagaagag
    10021 cgacggcgtt gccggctgga ttaaggagat gtttggcggc aattaatcac ggtaatagtg
    10081 ccgggtggcg ctgtgcttac tcggtccaca ccgttacgac cccattatgt gcgacgtagg
    10141 ccgaataaga cgcttacatc gccatccggc aaatcctcca taaataacat ttcagtctaa
    10201 tttattaacc cttccttttc atctggttgt ttcttaaccc cttagttttc gtagggccgc
    10261 gtatcgcttg ccattgcgac gatatttcgc ctatcatgct gcggttataa taataattat
    10321 cgtttacgtt atcattcact ttcatcagag atataccaat ggcgcgtctt aaaattgctc
    10381 agccaaactc ctcactgcgt aaaatcgcag ttgtagtagc cacagcggtt agcggcatgt
    10441 ctgtctatgc acaggcggcg gttcaaccga aagaagaaac cattaccgta accgcagcgc
    10501 ctgcgccgca ggaaagtgcc tggggaccgg ctccgaccat cgccgcgaag cgttccgcca
    10561 ctaccaccaa aactgataca tctatcgaaa aaacgccaca gtcggtttcg gtggtcacta
    10621 acgaagagat gcagatgcat caattccagt cagtaaaaga agcgttgggt tacacgccgg
    10681 gcgtaactgt aagcagtcgc ggcgcttcca atacctatga cttcgtgatt atccgtggct
    10741 tctcttccgt cggcctgagc cagaataact atctctggat ggcctgaaat tgcagggtaa
    10801 cttctacaac gatgcggtta ttgatccatc cctgcttgag cgtgttgagt tgatgcgtgg
    10861 cccaacgtcc gttctctatg gtaagagcaa cccgggcggt atcatttcga tggttagcaa
    10921 gcggccgact actgagccgc tgaaagaaat tcaattcaaa atggggacgg acaatttgtt
    10981 ccagaccggt tttgatttta gtgattccct ggatgacaac ggtgagttct catatcgtct
    11041 gacggggctg gcgcgctcga caaatgagca gcaaaagagt tctgagtcgc agcgctatgc
    11101 gattgcgccc tcttttacct ggcgtcctga tgagaaaacg aattttacgt tcctttctta
    11161 tttccagaac gaaccagaga ctggctacta cggctggctg ccgaaagagg gaacggttga
    11221 accgttaccg aatggtaaac gcttgccaac agatttcaat gaaggggcgt caaacaacac
    11281 ctattctcgt aacgagaaaa tggtgggata cagtttcgag catggcttca acgacacttt
    11341 taccgtgcgc cagaatttac gttttgtcga aatgaaaacc gcgcaaaaaa gcgtctatgg
    11401 cacggggatt gcggcggacg gccatacgct taaccgcggt actatcgttg acaacgagcg
    11461 tttacagaat ttcagcgtag atacacaact ggaaagtaaa ttcgcgaccg gcgatattga
    11521 tcatacgttg ctgacgggtg tcgatttcat gcgtatgcgt aatgatatta acgcgacgtt
    11581 tggtagcgcg ccgtcaatcg atctctataa caattaccat cctgaatact ttgctttcgg
    11641 cggcgctgag ccgtaccaga tgaacgaaag taaacaaaca gccttatatg ttcaggatca
    11701 ggcggaatgg aataagtggg tatttactct cggcggccgt tatgactggt ctaaacaagc
    11761 gataacggtg cgtcagaatt ccactacgcc gacagaagga tatattgaac gtaatgacca
    11821 ccagttcacc tggcgcggtg gcgtaaacta cgtattcgat aatggaattt caccttactt
    11881 cagctatagc caatctttcg agccaagcgc cttcgatttg tggagcaccc cacgtgtttc
    11941 ttacaagccg tcaaaaggcg agcaatatga agcaggggtg aaatatgtac cgaaagacat
    12001 gccagttgtt gttacgggtg ccgtttatca gctgaccaaa accaataacc tgaccgccga
    12061 tccaaccaac ccattagcgc aggtgccggc aggcgaaatt cgtgcgcgag gtgtagagct
    12121 ggaagccaaa gcagcattga cggctaatat caatatgacg gcgtcttaca cttatactga
    12181 tgctgaatac acgaaagaca ctaacctgaa agggaatacg ccagagcagg tgcctgaaca
    12241 catggcgtcg ttgtggggcg attacacctt caacgatggt ccgttgtcag gtttaacgct
    12301 gggaacaggc ggtcgtttta ttggttccag ttacggcgat ccggccaata gcttcaaggt
    12361 aggcagcgca gcggtgatgg atgcggtcgt caagtacgat ctggcgcgtt ttggtatggc
    12421 gggctccagc attgcggtta acgttaataa tctgctcgac cgcgaatacg tcgccagctg
    12481 cttccagacc tacggctgtt tctggggcgc agaacgtcag gtcgttgcaa cggcaacctt
    12541 ccgtttctaa tttctttttg ggcacggctt gccgtgcccg ttttacaagt tggctgcgat
    12601 gcaggaaaac cacattcatt ccgataccac ctttgcgctg cgaagcgtcg cttttcgtgt
    12661 gccgggccgc acgcttttac accccctctc gttaacgttt cccgcaggtc gagtcaccgg
    12721 acttatcggc cataatggtt ccggtaaatc cacgctgtta aaaatgctgg gccgccatca
    12781 gctgccttcc gaaggggata ttctgctcga caatcagccg ctggcgagct ggagcagcaa
    12841 ggcgtttgcc cgcaaagttg cctatctgcc tcaacaattg ccgcaggcgg aaggaatgac
    12901 ggtgcgcgaa ctggtggcga ttggccgcta tccgtggcac ggcgcgttgg gacgctttgg
    12961 cgtcgcggac cgggaaaaag tagacgaggc gattacgctg gtcggcttaa aaccgctggc
    13021 gcatcgtctg gtcgatagcc tgtccggcgg tgaacgccag cgcgcgtgga ttgccatgct
    13081 ggtcgcgcag gacagccgtt gtctgctgct ggatgagccg acgtcagcgc tggatatcgc
    13141 ccatcaggtt gacgtgctgg cgctggtgca tcgtttaagc caacagcgcg ggctgacggt
    13201 ggttgcggtg ctgcacgata tcaacatggc ggcccgctac tgtgattatt tagtagcgct
    13261 acgcggcggt gaaatgattg cgcaaggaac gcctgcggaa ctgatgcgca gtgacacgct
    13321 ggaacagatt tacggtatcc cgatgggtat ccttccgcat ccggcgggcg ccgcgcctgt
    13381 gagttttgtg tattaatgcg tgagttatat cctcttactc gccgccgttt attaacggcg
    13441 atggcgctct cgccgctgct gtggcaaatg aatacggcgc aggctgccgc tatcgatccc
    13501 cgccggattg tggcgctgga gtggctgccg gttgagctgc tgctggcgct cggtattacg
    13561 ccttatggtg tggcggacgt gccaaattat aagctgtggg ttagcgaacc gccgttgccg
    13621 gattcggtga ttgatgtggg tcttcgcact gaacccaatc tcgaactgct gacggagatg
    13681 aagccgtcgt ttatggtgtg gtcggcaggt tacggaccct cgccggagaa actggcgcgg
    13741 atcgcgccgg ggcgcgggtt cgattttagc gacggcaaaa agccgctggc ggtggcccga
    13801 cgctcgctgg ttgaactggc gcagacgctg aatctggaag ctgcggcaga aaaacatctg
    13861 gcgcaatacg atcgcttcat cgccagccag aagccacgtt ttatccgccg cgggggacgt
    13921 ccgttactga tgacgacgct tatcgatccg cggcatatgc tggtgctcgg cccgaattgc
    13981 ctgttccagg aggtgctgga cgagtatggc atcgtcaatg cctggcaggg tgaaaccaac
    14041 ttttggggca gtacggcggt cagcatcgat cggctggcga tgtataaaga agcggatgtg
    14101 atctgcttcg atcacgggaa tagcaccgat atgaacgcgc tgatggcaac gccgctgtgg
    14161 caggccatgt cgtttgtccg cgccgggcgt tttcaccggg tgcccgccgt ttggttctat
    14221 ggcgcgaccc tctccacgat gcattttgtc cgcatcctga ataacgtgtt gggaggcaaa
    14281 gcgtgagcag aaaacgtgaa ataccggatg gcggtgcgaa aaacgcctta accgacctac
    14341 ggttcgggcg ctttgtaggc cggataaggc gaagccgcca tccggcgttg ctgttattgg
    14401 cgctgttggt tgccgcctgc tggctgacat gggttaactt ctccgttgcg ctaccgcgca
    14461 gtcagtggca acaggctatc tggtcaccag atatcgacat cattgagcag atgatttttc
    14521 attacagcca gctgccaaga ctggcgattt cgctgctggt gggcgcgggg cttgggctgg
    14581 taggcgtcct gttccagcaa gtattacgta acccgctggc ggaaccgacc acgctgggcg
    14641 tggcgaccgg cgcgcaattg gggatcacgg tgactacgct ttgggcgatt cccggcgcgc
    14701 tgaccacgca gtttgccgcc ctgacgggag cctgcatcgt cggcgcgctg gtgttcggcg
    14761 tggcgtgggg caaacgtctg tcgccagtga ccctgatcct cgccgggctg gtggtcagcc
    14821 tctattgtgg cgcaatcaac cagttactgg tgattttcca ccacgatcag ttgcaaagca
    14881 tgtttttatg gagcactgga acgctaacgc aaaccgactg gagcggcgtg cagcgtctgt
    14941 ggccgcagtt gctgggcggc gtgatgctca cgttattgtt gttacgtccg atgacgctga
    15001 tggggctgga tgacggcgtt gcgcgtaatc tggggctggc gctgtcgtta gcgcgtctgg
    15061 cggcgttgtc gctggcgatt gtgttgagcg cgctgctggt caacgcggtg ggcattatcg
    15121 gttttatcgg cctgtttgcg ccgctgctgg cgaaaatgct tggcgcaaga cgtctgctgg
    15181 cgcgcctgat gctggcgccg ctcattgggg cgcttatttt atggctatcc gatcagatta
    15241 tcctttggct aacccgcgta tggatggaag tctccaccgg gtcagtgacg gcgttaatcg
    15301 gcgcgccgct gctcctatgg ctgctgacgc ggcttaaaag catgagcgcg ccggatatga
    15361 acgccagcga tcgtgtggcg gcggagcgtc gacatgtcct cacttttgcc gttgccggtg
    15421 gcgcgctcct gctgctggca acatgggtcg cgctctcttt tggtcgcgac gcgcacggct
    15481 ggacgtgggc gagcggaacg ctgcttgaag aactgatgcc gtggcgctgg ccgcggatac
    15541 tggcggcgtt aatggcgggc gtcatgctgg cggtggcggg ctgcattatt cagcgtctga
    15601 ccggtaaccc aatggccagc ccggaagtgc tggggatcag ttccggagcc gcgtttggcg
    15661 tggtgttgat gctgtttttg gtgccgggga atgctttcgg ttggctactg cctgccggaa
    15721 gcctgggcgc ggcggcgaca ctgctgatta ttatgatagc cgccgggcgc ggcggtttct
    15781 cgccgcaacg gatgttgctg gcggggatgg cgctcagcac cgcgtttacc atgctgctaa
    15841 tgatgctcca ggcgagcggc gatccgcgga tggcggatgt gttgacctgg atctcaggat
    15901 ctacctataa cgccactggc gggcaggtta cgcgaaccgc gatcgtgatg gtgattttgc
    15961 tggccgttgt gccgttgtgt cgccgctggt taacgatttt gccactgggc ggcgatgccg
    16021 cgcgcgcggt gggcatagcg cttacgccgt cgcgtatcgc gctgctggcg ttggcggctt
    16081 gtttgacggc aaccgcgacg atgaccattg ggccgctgag tttcgttgga ttgatggcgc
    16141 cgcatattgc gcggatgctc ggttttcgcc ggacgatgcc gcatatggtc atctcagcgc
    16201 tggcaggggg cgttttattg gtctttgccg actggtgcgg caggatggcg ctatttccgt
    16261 atcagatccc ggcgggactg ctttcaagct ttattggcgc gccgtacttt atctatttgc
    16321 tacgtaaaca gagccgctga gtttgccgga tggcggcata aatgccttat ccggcctgcg
    16381 gtgtagaatg taggccgggt aagcgtaagc gtcacccggc aattcatcct ttacaatttc
    16441 gcaaacaccc gacgcgcggc gtcaatagta ttattaatgt cgtccatgct gtgtgcgacc
    16501 gacataaaac ccgcctcaaa cgccgatggc gccagataca cgccttcctc cagcatcagg
    16561 tggaagaaac gcttaaagcg ttccacgtcg cacgccatca cgtcctgata gcaagttacg
    16621 ctctcagcgt cggtgaagaa aatcccgaac atgccgccga catggttaac caccagcgga
    16681 atattcgctt cttcggcagc ttccagcaaa ccttccgcca ggcgggtggt gagctcatcc
    16741 agcgtttcat gaatgccggg ctgggcgact tcattcaggc aggcgaaacc ggccgccatc
    16801 gcaatcgggt tgccggaaag ggtgcccgcc tggtaaaccg ggcccgtcgg cgccagcgca
    16861 tccattacat cgcgacgacc gccaaacgcg cctaccggca tcccgccgcc gatgatttta
    16921 cccagacagg tcaggtccgg cacgacgccg tagtaatcct gggctccggc cagcgctacg
    16981 cgaaaaccgg tcattacttc gtcgataatc agcagcgcgc cgaactcatc gcacaaggca
    17041 cgcaggcccg gcaggaattc cggcagcggc gggacgcagt tcatattgcc cgccacgggt
    17101 tcgacgatga tacaggcgat ttcctgcgga tattgttcaa acgccgcgcg cactgacgtc
    17161 agatcgttat aagtgcaggt cagcgtatgt ttcgcgaaat ctgccggcac gcccggcgag
    17221 ttcggctgac cgagcgtcag cgcgccagaa ccggctttga ccagcagaca gtctgcgtgg
    17281 ccgtggtagc agccttcgaa tttgataatc ttatcgcggc cagtaaaacc acgcgccagg
    17341 cgaatcgcgc tcatcgtcgc ttcggtgccg gagttcacca tgcgcaccat gtccatggtc
    17401 ggcaccaggt tggtcaccag ttccgccatt tttacttcca tttcggttgg cgcgccgaag
    17461 cttaaaccgc gctccgcagc ttcgatcacc gcattgcgga tagccggatg gttatgcccc
    17521 agtaccattg gcccccagga accgacatag tcgatatatg ctttgccatc gacatcgtac
    17581 agatacgcgc cgtccgcttt ttcgataaac agcggggtgc cgcccacgcc agtgaaggcg
    17641 cgaacagggg agttcacgcc gccggggatc agctcgcggg ccgcgctata gagattttca
    17701 gacttactca tggaaagatt cctggttcgt agaaaaagtg aatacccgct attctaagtt
    17761 attcagagaa ggttatgaaa gttttacgca tttgaaacaa tacgatttgc aggggatttt
    17821 cacggcgttg gcgagtagaa tgccgacttt agatttgtat taccaattaa tgatcttctg
    17881 atgaaaacag acacttccac ctttttagct cagcaaattg tgcgcttacg gcgcagagat
    17941 cagattcgtc ggttaatgca gcgggataaa acgccgctgg ccatcctgtt catggcggcc
    18001 gttgtcggca cgcttaccgg actggttggc gtcgcctttg aaaagacggt ttcctgggta
    18061 caaaacatgc gcattggcgc gctggttcag gtcgcggacc atgcgttttt gctttggccg
    18121 ctggccttta tcctttcggc gttactggcg atggtcggct attttttggt gcgaaaattt
    18181 gcgccggaag ccggcggctc gggtatcccg gaaattgaag gcgcgctgga ggagttacgt
    18241 ccggtgcgct ggtggcgcgt gttgccggtg aagtttatcg gcgggatggg aacgttgggc
    18301 gcaggaatgg tattagggcg cgaagggcca acggtgcaaa tcgggggcaa cctggggcgc
    18361 atggtgctgg atgtttttcg tatgcgcagc gccgaagcgc ggcatacgtt gctggcgacc
    18421 ggcgcggcgg cggggctctc tgcggcgttt aacgcgccgc tggcgggtat cctgtttatt
    18481 attgaagaga tgcgcccgca gtttcgctac aacctgattt cgattaaagc ggtgtttacc
    18541 ggcgtcatca tgtcgagcat tgtgttccgc atatttaacg gcgaagcgcc gattattgaa
    18601 gtcggcaaac tgtctgatgc gccggttaac acgctgtggt tataccttat cctcggtatt
    18661 atttttggct gcgtcgggcc ggtatttaat tcgttggtgc tgcgtaccca ggatatgttt
    18721 cagcgctttc atggcggcga aattaaaaaa tgggtgctta tgggcggcgc gatcggcggc
    18781 ctgtgcggta ttctggggtt gattgagccg gcagcggcag gcggcggatt taaccttatt
    18841 cctatcgccg cggcaggtaa ttttagcgtc gggctactgc tgttcatctt tattacccgg
    18901 gttgtcacga cgctgctttg cttttcttcc ggcgcgccgg ggggcatttt cgccccgatg
    18961 ctggccctgg gaacgctgct tggtacggcc ttcggtatgg cggcggcagt gcttttcccg
    19021 cagtatcacc tggaggccgg tacctttgcg attgccggga tgggggcgct gatggcggcg
    19081 tcggtgcgcg ccccgttgac ggggattgtg ctggtgctgg agatgaccga taactatcag
    19141 ctcattttgc caatgattat cacctgtctt ggcgcgacac tattagccca gtttttgggc
    19201 gggaaaccgt tatactcaac catcctggcg cgcactctgg cgaagcagga tgcggaacag
    19261 gcggcgaaaa accagaatgc gcctgcgggc gagaatactt gaacgaatta ccagggtatt
    19321 agataatgac tgccaatatt gggtgaaaat ttatccaatt accgatgtcg tttggagcaa
    19381 aatatgagtg atgacgtagc gctgccgctg cagtttaccg acgcagcagc gaataaagta
    19441 aaaagtctta tcgctgacga agataacccg aatctgaaac tgcgcgtgta tatcaccggc
    19501 ggtggttgca gcggcttcca gtatggtttt acctttgacg atcaggttaa cgaaggggat
    19561 atgaccatcg aaaaacaggg cgttggcctg gtggttgacc cgatgagttt gcagtatctg
    19621 gtgggtggtt cggtagatta taccgaaggt ctggaaggtt cccgcttcat tgtaaccaac
    19681 ccgaatgcga aaagtacctg cgggtgtggc tcttccttca gcatttgatt gctgttcgtt
    19741 gtgccggatg gcgacgcgag cgtcttatcc ggcctacagg aaagatgttc taggcccgat
    19801 aagcgtagcg ccatcgggca aaacaatatc aacgtccgtt ttcatccagg gcaaacgtcg
    19861 gcaatttcaa atgccagcga atggccgcca gccgaataaa cagcgtgacg accatgccca
    19921 tcatgctagc gctttccagc ggtactgaaa acgtataaaa cgcggtggcg tgaacaatcc
    19981 cgccgataat acaggccgtg gcatagattt cggtgcgtag gatcatgggg atctcgcgtg
    20041 ccagaacatc gcgaataatc ccgccgccga cgccggtaat cacgcccata cagacggcca
    20101 ctaatggccc cgtttcagcg aggaaggctt tattcacccc aatgccgaca aacaccgcca
    20161 gcccgaccgc atccagtacc ggcaacatcc atttcggcag acgtctcggc tggcgaacca
    20221 gcaggatggt cagcatactg gtgaccatgg cgacgaccag gtcggtagga tctttaaccc
    20281 agaataccgg gccgttatcc agcgccatat cgcggattgt cccgccgccg acggcagtaa
    20341 cgacgccgag caccaggacg ccgaacgggt ccatacgtaa tttcccggcc agcaacacgc
    20401 cagagatagc aaatacagcc gtgcctacaa tatccagcca atagacgagc attgtcgaat
    20461 ccccactagg agcctggtaa gacaggctct aattcacctg tgaaagcgca ttacagagtt
    20521 gttttgcggc gaggataata cgcgggcttg cgcgttcaaa ccagtcgctg ttaagcggaa
    20581 taaccggaat ttttaacagg tttccccagt attgttcaat tttgagaatt tcgcccgctt
    20641 ttccggccac gataatggcc tggggatgcc ttgccagcac ctgctcacgg ctgacttgcg
    20701 gccacggcac gcggctgtca gcaaagacgt tttctccgcc gcaggtcgtc aaaacctgat
    20761 gttgaataga ccctttacca ctggtaaaca gaggattcat gccaaactga agaaagacgc
    20821 gctttttagc tttaccggca tactcgactt tgagcgcggc gtactctttt agcaatgtct
    20881 gcgctgcctg ctgagccttt tccggctgcg ggctccaggc ggccagttgg cggagcgcgt
    20941 cggcgatctg ttcgatggtt accgcgtcca cccacatgac cttaatacct aatgacgtca
    21001 gttggtttac ctggcgttcc gcattaccgc cgcgccaggc gacgaccaga tccggcttca
    21061 gcgccacaat gcgctccaga ttcattccct gccaggtaga gacctgttct attttttgcg
    21121 cttcgggcgg gtagtcggaa tagctgctga cgccaacggg cgtaatctcg gcggcaaaag
    21181 caagctccgt attggcggga gagagcgtaa ttacgcgcgg cgcagcgtaa agccacaccg
    21241 ggagcgtaag cagcagggcg cccagcgccc tgaacatttg cttagccatg cgccagtttc
    21301 tgtaccagcg tttcgaccat cagagtcgac tgtttcgccg ccaccgcgag gaattcgtca
    21361 aagctgaggt gcgattgctg atcggccacg tcagagatag cgcgtaccac cacgaacggc
    21421 acgttgaagt tatggcagac gtgggcgata gcggtggctt ccatctctac ggcgaccgcg
    21481 tcggggaagt tatgccggat tttcgccagc ccgacggaac cgttaataaa cgcgtcgccg
    21541 ctaacaataa ggccgcgtac cgcgttcaga ttcaactccc tgatgcagga ttccgcggcg
    21601 gcgatcagct tatcatcggc cttaaatccg gccggacagc ccggtaattg cccgtattca
    21661 tagccgaaag cggtcacatc agcgtcgtgg taacgcgctt cgtcagagac gacgatatcg
    21721 ccgaccttca gcgtggacgc cagaccgcct gcggaaccgg tattgatgat cacgtccggc
    21781 ttgcagtgct ccagaagcaa cgttgcgccc agcgccgccg cgactttacc gataccggat
    21841 ttcagcaacg ccacttcggt gccgttcaac tggccagtgt aaatttcgca gccgcccagc
    21901 gtaatcgtct gacggttgtc aattttgtca cgcagcagcg taacttcttc ttccattgcg
    21961 ccaatgatgc cgattttcat agatttactc gcgataagtc agttttgggg gcatagttta
    22021 tcatgcgctt atggggaagc gcatttctca ggcggggaga ggatatggca tcgatcgatt
    22081 tccgaaataa aattaactgg catcgtcgtt atcgttcacc gcagggcgta aagacggaac
    22141 atgagatcct gcggattttt gaaagcgatc gcgggcggat tatcaactct ccggctatac
    22201 gccgtttgca gcaaaaaacg caggttttcc cgctggagcg caatgccgcg gtgcgtactc
    22261 gtctgacgca ttcgatggag gtgcagcagg tggggcgtta tatcgcgaaa gagattttaa
    22321 gccgcctgaa agagcaaaac cgactggagg agtacggtct ggatgcgctg accggtccct
    22381 ttgaaagtat tgtggaaatg gcctgtctga tgcacgacat cggtaatccg ccgttcggtc
    22441 attttggcga ggcggcgatc aatgactggt ttcgtcagcg gctgcatccg gaagatgcgg
    22501 aaagccagcc gctcacgcat gatcgctgtg tggtttcctc gctacggtta caggaaggtg
    22561 aagaaaatct gaacgatatt cgccgcaaag tacgtcagga tatctgccat tttgaaggta
    22621 atgcacaggg aattcgtctg gtacatacgc tcatgcggat gaatcttacc tgggcgcagg
    22681 ttggcggaat tttaaaatat acccgtccgg catggtggcg agggccggtg ccggattccc
    22741 atcgctattt aatgaagaaa ccgggctatt atctttctga agagaagtat attgcgaggt
    22801 tacgtaaaga acttcagtta gcgccttaca gtcgctttcc attaacgtgg attatggaag
    22861 ccgcagatga tatttcttat tgtgtcgccg atcttgaaga cgcggtagag aaaagaatct
    22921 ttagcgttga gcagctttat caccatttat atcacgcgtg gggccaccat gagaaggatt
    22981 cgctgtttga gctggtggta ggaaatgcgt gggaaaaatc acgcgccaat acattaagcc
    23041 gcagtaccga agatcagttt tttatgtatt tacgggtaaa tacattaaat aaactggtgc
    23101 cctatgccgc tcagcgtttt attgataatt tgccgcagat ttttgccggt accttcaatc
    23161 aggcgttact ggaagatgcc agcggtttta gccgcctgct tgaactctat aagaatgtgg
    23221 cggttgaaca tgtgtttagc catccggatg tagaacagct tgaactacag ggataccggg
    23281 tgatcagcgg gttattagat atctatcagc cgctattaag cttgtcgctt aacgactttc
    23341 gcgagctggt ggaaaaagaa cggttgaaac gcttccctat agaatcgcgc ttatttcaga
    23401 aactttctac gcgccatcgt ttggcctacg tggaagtcgt cagtaaatta cccacggatt
    23461 cggcggagta cccggtactg gaatattatt atcgctgtcg gttgattcag gattatatca
    23521 gcgggatgac tgacctttac gcatgggatg aatatcggcg tttgatggcg gtcgaacagt
    23581 aaatggactt ttgtaaagat ggacaataaa tttttacttt ttccagaaac tttattccgg
    23641 aacttcgcgt tataaaatga atctgacgta cacagcaatt ttgcgttacc tgttaatcga
    23701 gattgaaaca catgaaaaaa accacattag caatgagtgc actggctctg agtttaggtt
    23761 tggcattgtc gcctctgtct gccacggcgg ctgaaacgtc ctcttcagca atgactgccc
    23821 agcagatgcc aagcctggca ccgatgctcg aaaaagtgat gccatcggtg gtcagtatta
    23881 atgtagaagg tagcaccacg gtgaatacgc cgcgtatgcc gcgtaatttc cagcaattct
    23941 ttggcgatga ctccccgttc tgccaggacg gttctccgtt ccagaattct ccgttctgcc
    24001 agggcggcgg taacggcggc aacggcggtc aacaacagaa attcatggcg ctgggctccg
    24061 gcgtaattat tgacgccgcg aagggctacg tcgtcaccaa caaccacgtg gttgataacg
    24121 ccagcgtgat taaagtacag cttagcgatg ggcgtaaatt cgatgctaaa gtggtgggca
    24181 aagatccgcg ttctgatatc gcgctgattc aaattcagaa tccgaagaac ctgacggcga
    24241 ttaagctggc ggactccgac gcgctgcgcg tgggggatta taccgtcgct attggtaacc
    24301 cgtttggtct gggcgaaacg gtgacgtcag gtatcgtttc ggcgctgggg cgtagcggcc
    24361 tgaacgtaga aaattacgag aactttattc agaccgacgc cgcgattaac cgcggtaact
    24421 ccggcggcgc gctggtgaac ctgaacggtg agctgatcgg tattaacacc gcgattctgg
    24481 cgccggacgg cggcaacatc ggtatcggct tcgctatccc cagtaacatg gtgaaaaacc
    24541 tgacgtcgca gatggtggaa tacggccagg tgaaacgcgg cgaactgggg atcatgggga
    24601 ctgagctgag ctctgagctg gcgaaagcga tgaaagtcga cgcccagcgt ggcgcgttcg
    24661 tcagccaggt gatgccgaat tcgtccgcag cgaaagcggg tatcaaagcc ggggatgtca
    24721 ttacctcgct gaacggtaaa ccgatcagca gctttgcggc gctgcgcgct caggtcggca
    24781 ctatgccggt cggcagcaaa atcagcctcg gtctgctgcg tgaaggtaaa gcgattacgg
    24841 ttaatctgga actgcagcag agcagccaga gtcaggttga ttccagcacc atcttcagcg
    24901 ggattgaggg cgctgaaatg agtaataaag gccaggataa aggcgttgtg gtgagcagcg
    24961 tgaaagcgaa ctcacccgcc gcgcaaattg gcctcaaaaa aggcgatgtg attatcggcg
    25021 ctaaccagca gccggtgaaa aatatcgccg agctgcgtaa gattctcgac agcaagccgt
    25081 cggtgctggc gctgaatatt cagcgtggtg atagttctat ttatttgctg atgcagtaat
    25141 cacctttgtc ccccttccac cacggaaggg ggcaacactt ttctgtgaaa ctccccacaa
    25201 ctccatactt ctttgcaccg ttttgtgcat ttgcacaatg tcgaggcctg tcatcttcct
    25261 tatgcttgtg ctctgctcac aggagggatt tatggctggc tggcatcttg ataccaaaat
    25321 ggcgcaggat atcgtggcgc gcactatgcg catcatcgat accaatatca acgtaatgga
    25381 tgcccgcggg cgtattatcg gcagcggcga tcgggaacgt attggtgaat tgcacgaagg
    25441 cgcgttgtta gtgctgtcac agggccgggt tgtggatatc gacaacgccg tggcgcgaca
    25501 cctgcacggg gtgcgtcagg ggattaatct tcccttacgc cttgagggcg aaattgttgg
    25561 cgtgatcggt ctcaccggcg aaccagagca tctgcgtaaa tatggcgaac tggtgtgtat
    25621 gactgccgaa atgatgctgg aacagtcgcg gttaatgcac cttttggcgc aggatagccg
    25681 tttgcgtgaa gagctggtga tgaacctgat tcaggccgaa gaaaatacgc cggcgctggt
    25741 ggaatgggca cagcgtttag ggatcgattt gaaccagccg cgtgtggcgg cggtggtgga
    25801 agtcgacagc ggccagcttg gcgtcgatag cgcaatggcg gaacttcagc agttgcagaa
    25861 tgcgcttacc acgccggagc gtaacaacct gatagccatt gtttccctta ccgagatggt
    25921 ggtgctcaaa cccgccttaa actcgtttgg tcgttgggat gctgaagatc atcgtaagcg
    25981 cgtagagcag cttatctcgc gaatgaaaga gaatggtcag ctacgttttc gcgtggcgct
    26041 gggtaattac tttaccggac cgggcagtat tgcacgctca taccgcacgg cgcgcaccac
    26101 gatgatggtc ggcaaacagc ggatgccaga aagccgcagc tatttttatc aggatttgat
    26161 gctgccggtc ctgttagata gcctgcgtgg cggctggcag gccaatgagc tggcgcgccc
    26221 gctggtaaaa ctcaaagcga tggataacaa cgggttatta cgtcggacac tgacggcgtg
    26281 gtttcgccat aatgtccagc cgctggcgac ctctaaggcg ctgtttattc atcgtaatac
    26341 gctggaatat cggctaaatc gtatttcgga actgaccggg ctggatttgg gaaattttga
    26401 cgatcggctg ttgctgtatg tggcgctaca attggatgaa cagcgttaag cccggcggcg
    26461 cttcgcttac caggcctacg gggatatacc tgtaggccgg ataaggcgta acacgtcgcc
    26521 atccggcaac acacagctta cttacgggta agcttgtcca gatcggcttc gatttcactg
    26581 atcttattcg cgacgacgct ttccagatgg cgcaagtcgt cgaggatctt acgtttgaga
    26641 tcgagttctg agcggtcgcg ctggcagatt tggtccagct cgtcaatcac atagcgtagg
    26701 ttagggctaa tctcctgtac ttctttataa ccctgaccga tgccatcagc caccaccgtt
    26761 ttacgctggc gtggatactt aaacttcacg cttttagcaa agaattcacc tctatccttt
    26821 tgaaaataga ttttcaggat atcgttattg gcttcttgcc gcaggctgta acgatcgatt
    26881 tcctcaggat tggtaatgcc cagacttttt agattgtcat acatagcggt atccttcatc
    26941 acactataac ttttgaataa ttaacgaaaa attggttttt cgccaccaat ggatacaaaa
    27001 aaagcgcggt tgatcgcaga agacgtctcg gcaacgtcat gagcaaaagg gcggcggtta
    27061 ttgatagctt aagtaattca acgcgatatt ccgtttatag agaaagcgtt tgaggtcagt
    27121 gtgggaaatt gaccggaggc agtggtcgat aaccttgaga ggcggaatct atgtccggaa
    27181 cgtataatgc cactattcgc cgggtggtga tttccgcctg gataggaaac tccattgaat
    27241 attatgattt tctattatac ggcttagcaa gcgcgctggt atttggcccg ctttttttcc
    27301 cctggcgcca gcccattgac tgcaacgtta tcttcttttg ccagtttcgg cgtgggattt
    27361 atttcccgac cgctgggcgc gctatttttt ggcaacaggg gggatacgct tgggcgtaaa
    27421 aacacgttat taatcacgtt aggcgggatg ggcgcggtca cgtttctcat cggttgcctg
    27481 ccttcttacg ccagtatcgg cgcgctgaca cctgctttac tggttattct acgttttcta
    27541 cagggattta tggttggagg tgaatgggga ggcgccatgt tgatggtcgt ggaatatgct
    27601 gctggaaagc accgggggcg gttaagcgcg ctatcgcaaa caggaggact cacgggacaa
    27661 ttattggcga caggcgtatt tatagtcgtg acccaattac cgcaggaggc gttgttatcg
    27721 tggggatggc gtattccttt tctgctcagt gcgcttttgg tgttgccggg attatatatg
    27781 cgtcatcgtc tggatgagac gcctgtcttc cgtgcgttta aaaagcagca ggccattaat
    27841 cataggcagc aaagggatga aaggccggtg gtcaaagtag tacgagaaca atggcgtagc
    27901 attttgctga ttataattct gcgttttgcg gaaagcgttc ccttttttct tgctaccgtc
    27961 ttcgcggttt cctgggcgac gacgcagctt gggattgcca gcctgactat tctgtacatt
    28021 gtaatgttca cctgtctgct ggcgtatccc atgcacgtgc tatttggcat catgtcggat
    28081 cggcgtggct gccgtcaggt gtatattttc ggcgcgcttt ttgtcgcggc aatggctttt
    28141 ccctttttct ggctgctgga aagccgttcg ctcatactga tgacaatggg ctacgttctg
    28201 cttattaaca ttggtcataa ttcactgaat gccgtgcaac cttctttttt cgccggactg
    28261 tttcatccgc ctgtacgcta cagcggttca tcaattggcg ctcagttggg ggcggttgtg
    28321 gcagggggat tcacgccgtt tatcgctaaa gcgttaagcg cagtctatga taacagttgg
    28381 actttggttg ccggttatgt cgttttgact gcgctggctt cggcgtttgc ggcaaagatt
    28441 gcgccggaca ccgtgttacc gcattcgccg taatgcaaag gggggctgtc gcccccgctt
    28501 ttcactcgct taatcaatcg tgcgcaataa ttcgttaatg cccactttac cacgcgtttt
    28561 ggcgtcgact tttttcacga tcaccgcgca gtacaaactg tacttaccgt cttttgacgg
    28621 caggttgccg gaaacgacca cggagcccgc cggtacgcgg ccatagtgaa cttcaccggt
    28681 ttcgcgatcg tagattttgg tgctctggcc gaggtatacg cccatggaaa tgacggaacc
    28741 ttcttcgaca atgacgcctt ccacgacttc agaacgcgcg ccaataaagc agttgtcttc
    28801 aatgatggtc gggttagcct gcagcggctc cagtacgccg ccgataccca cgccgccgga
    28861 aaggtgaaca tttttaccaa tctgcgcaca ggaacccacc gtcgcccagg tgtcaaccat
    28921 ggtgccttcg tcaacgtagg cgccgatgtt aacgtaagac ggcatcagca cggtgttgcg
    28981 ggcgataaat gcgccctgac gaacggccgc aggcggaacg acgcggaagc cttctttctg
    29041 aaaacgcgct tcgtcgtaat cagcgaattt catcggggct ttatcgaagt agcggctttc
    29101 cgcaccgtcg ataacctggt tatcgttaat acggaaagag agcagaaccg ctttcttcaa
    29161 ccactggtga gtgacccact gaccgtcgat tttttctgcg acacgcagcg cgccggaatc
    29221 aagtagagaa atgacctgtt ttaccgcctc tcgggtcacg gtatctacat tagccggcgt
    29281 aatatcggcg cggcgctcaa aagcggtctc aataacgttc tgtaactgct gcattgttaa
    29341 actctttcat ataaataaac acactaccct ttatcgtttg gattgagggc cgctgtcaac
    29401 cgttgttgca cctcaagttg cagcacatta ttaagtgcgc gccgatccgc tgtggcgatt
    29461 atgaataaat cttctactcg ttcaccaatg gttgtaattc gggcaccatg aagcgaaatt
    29521 cccagatcgg caaaaatttg tccgaccctg gccagcagac caggttgatc gagcgcgatc
    29581 aattccatga atgattttct gtcggtatgg gtgggcagaa aattgacttc cgtttcgacc
    29641 gtaaagtgcc gtaactttgc cggttgccga cgcggctgcg gcggctgcca gctatgctgc
    29701 gtaatggtct gttcaagacc ggtgcgaata acgtcatggc gatctgccgc cagcgggctg
    29761 ccgtctggtt ccagaacgat aaacgtatcc attgccatgc cgtcgcgagt ggtaaagatc
    29821 tgcgcgtcat ggacgcttaa attacgcctg tccagctcgg cgcagacggc ggcaaacaga
    29881 tagggtctgt ccggactcca gataaaaatt tcggttccgc cgcgcgtggc ttgcggactg
    29941 agcaacacta acggttggct cagatcgtgc tgcaataaat ggcgtgcgtg ccaggcgagc
    30001 tgatttggac tatgacgaac aaaatagtta gcgcgacagc gggtccagat tttgtgcagc
    30061 gcggcttcat caatattgtc cattcgcagc agcgccagcg cctgaagctg atggtgacgc
    30121 acgcgctcac gcatatccgg cgtattttgc attccacgcc tgagctgttt ttcagtggcg
    30181 aagtacagct cgcgcagcag gctctgtttc cagctattcc acaaggtttc gttggtcgcg
    30241 cagatgtccg cgacggtcag gcagaccaga aaacgcagcc gtgtttcggt ttgcacctct
    30301 tcggcaaact gcttgatgac ttccggatcc tggatgtcgc ggcgctgagc ggtgactgac
    30361 attagcaggt gttggcgcac cagccaggcg accagttgcg tttcgcgtga gttcaaaccg
    30421 tgcagttcgg cgaaggtgag tacatcctgc gcgcccagta ccgaatggtc gccgccgcgt
    30481 cctttcgcaa tatcgtggaa cagcgcggcg atcaggatca gttccggatg gggaagccgc
    30541 ggccagagat cgacgcatag cggatggcgc tggcgtgtct cttctttcgc aaagctctcc
    30601 agtttgagca ttacgcggat ggtgtgttca tccaccgtgt atgcgtggaa caggtcaaac
    30661 tgcatttgtc cgacgatgtg cgaccactgc ggcatataag cccacagtac gctgtggcga
    30721 tgcatgggca gcaggccgcg gctgaccgcg ccgggatggc gtagcatact cagaaacaga
    30781 gtgcgcgcct ccgggatgta acacagcggt tggctcaggt ggcggcgggc gtggcgcaag
    30841 tggcgtaacg tcgtagagta gatgccggtg atcgcgctat tgcgcaccat catataaaac
    30901 atccgcagga tcgcttgcgg ttcgcggata aacagcgtgt cgtcacgcag atcaatgagc
    30961 gtgccgcgca gttgaaactc atcgtcaaca ggacgtggtt tttcatccgc aggcagcgcc
    31021 agaatcgcct cgtcaaatag ctgaagcagc atctgattaa gttcgctcac ccgacgcgta
    31081 acccggaagt agtctttcat catccgctca accggatcat tgccctcgcc gctgtagtta
    31141 aggcgttgag cgacgcttaa ctggcggtcg aacagcaggc ggttatcgta gcggctgacc
    31201 accagatgta gcgcaaagcg aatgcgccac aggatatgca ggcactcgtt gagctccgcg
    31261 cactcagccg gggttaaaaa gccgaatccc accatctcat cgagcgaggt ggcgccgaag
    31321 tgacgtcggg cgacccactg caatgtatgg atatcgcgca ggccgccggg gctgctttta
    31381 atatccggct ccagattata gctggtaccg tgatagcgct ggtggcgctg gttctgctct
    31441 tctactttgg cggcgtaaaa tttgtcggac ggccaaaaac cttcgctgaa aatatgtttt
    31501 tgtagtgcca gaaacagagc gacatcaccg atcagcaggc gcgtttcgat gaggtttgtt
    31561 gcaacggtta aatcagacag accttccagc agacactctt ccagcgtacg tacgctatgc
    31621 ccgacatcca gcttgacgtc ccaaagtaaa gtcagcagct cgccgacctt ttgcgcctgt
    31681 tcatcgggca gctttttgcg gcttaaaatg agcagatcaa tatcggaaag cggatgcagt
    31741 tcgccgcgtc catagccgcc gacggcgacc agcgccagat cggcaatctg accgaaaccg
    31801 gcctcaatcc acaggcgttg caacaactgg tcgataaatt cggttcgggc ttcaataagc
    31861 tgttcagcac aaatgccgct gtcaaatgcc tctcccagcc agtgttgaaa gatgtcgatg
    31921 cgggctttga taccggcgac ggtcagttca gcgcgcggcc agacgccagg gttttgcggc
    31981 tggtcaggga gggtggggag tgcggtattc gcgtgctgtt caggaagagt attcatatgc
    32041 gccacccatt aaaaagccgg atggtggcgt gaacgcctta tccggcctac gaagtagtac
    32101 aatttgtagg cctgataaga tgcgaaggca tcgccatcag gcaaaacatt attcgtcgtg
    32161 tgtgatgatc gccgggatgg tgtcatcttt acgcagcgtc agaatttcac agccgttttc
    32221 cgttaccaca atagtatgct cgtactgagc agacaagctg cggtctttgg tttttaccgt
    32281 ccagccgtct ttcatggtgc ggatacggta atccccggca ttcagcatcg gttcaatggt
    32341 aaaggtcatg ccaggctgca acacgacgcc accatcgtct gcatcataat gcagcacctg
    32401 cggttcttca tggaagccgc gaccaatacc gtgtccgcag tattcacgta ccacggagaa
    32461 accttcgcct tcggcatatt tctggatggc ggcgccaatg gtgcgcaggc ggatgcccgg
    32521 tttcaccatt ttgatgccca gatacaggct ctcttgcgtg acgcggcaca gacgctcgcc
    32581 cagaatagtc ggtttgccga cgataaacat ctttgaggta tcgccgtgga attcatcttt
    32641 aatcacggtc acgtcgatgt tgacgatatc accatctttc agatgtttag cgtcatccgg
    32701 aatgccgtgg cacaccactt cattaataga gatacagacg gatttcggat agccgtggta
    32761 gccgaggcag gcggagatcg cgtgttgttc gttaacgatg taatcgttac agatacggtc
    32821 cagttcgccg gtggtgacgc ccggtttgat atacggttcg atcatttcca gcacttcggc
    32881 tgccagacgg cccgcgacgc gcattttttc gatgtcttca gatgtcttga tagagatagc
    32941 catgaattct gtccatcagt gccgatgatt tcggcaataa ttgtgtaagt gctgacaatg
    33001 gtatcagtca ggggtgtacc ctgccaaatt gagaatcatt ctgaacttcg cctttcgtgc
    33061 cacaggtgcg ttggcgacat tttttcaccc cagtcactta ctggccgtaa gctcccgggg
    33121 atgcaaaaat ttgccgcctg cctgtaacac gaaattcatc gttcaattca gcactgagtg
    33181 ccaacaatta ttggtgtcgg tggcgtattt gtggtataaa gcgtgccgga cttccgatcc
    33241 attcgaagac tacacacgat ggacgggagc gacaaatctc actttgtgta acaacacaca
    33301 cgtatcggca catattccgg ggtgcccttt ggggtcggta atatgggata cgtggaggca
    33361 taaccccaac ttatctatag aggttttaaa tcatggcaac tgtttccatg cgcgacatgc
    33421 tcaaggctgg tgttcacttt ggtcaccaga cccgttactg gaacccgaaa atgaagcctt
    33481 tcatcttcgg cgcgcgtaac aaagttcaca tcatcaacct tgagaaaact gtaccgatgt
    33541 tcaacgaagc tctggctgaa ctgaacaaga tctctgctcg taaaggtaaa atccttttcg
    33601 ttggtactaa acgcgctgca agcgaagcgg tgaaagaagc tgctaacagc tgcgaccagt
    33661 tcttcgtgaa ccatcgctgg ctgggcggta tgctgactaa ctggaaaaca gttcgtcagt
    33721 ccatcaaacg tctgaaagac ctggaaactc agtctcagga cggtactttc gaaaagctga
    33781 ccaagaaaga agcgctgatg cgtactcgtg agcttgagaa actggaaaac agcctgggcg
    33841 gtatcaaaga catgggcggt ctgccggacg ctctgttcgt tatcgatgct gaccacgagc
    33901 acattgctat caaagaagcg aacaacctgg gtatcccggt atttgctatc gttgatacca
    33961 actctgatcc ggacggcgtt gacttcgtta tcccgggtaa cgatgacgca atccgtgctg
    34021 ttagcctgta cctgggcgct gtcgctgcaa ccgttcgtga aggccgttct caggatctgg
    34081 cttcccaggc ggaagaaagc ttcgtagaag ccgagtaata aggcttgata actccctaaa
    34141 atagttcgag ttgcaggaag gcggcaagct cgagaattcc cgggcgctta catcagtaag
    34201 tgtccgggat gagcgagtga aggcaacgcg cctgcggctc gaaatatgaa ggggagagcc
    34261 cttatagacc aggtagtatc acgtttggtt agggggcctg tatatggccc cctttttcac
    34321 ttttatatct gtgcggtttg atgccgggca gatcaaatct ttcgaggatt ttagaatggc
    34381 tgaaattacc gcatccctgg taaaagagct gcgtgagcgt accggcgcag gcatgatgga
    34441 ttgcaaaaaa gcgctgactg aagcgaatgg cgacattgag ctggcaatcg aaaacatgcg
    34501 taagtccggc gctatcaaag cggcgaaaaa agcaggcaac gtggctgctg acggcgtaat
    34561 caaaaccaaa atcgacggta acgtcgcttt cattctggaa gttaactgcc agactgactt
    34621 cgtggctaaa gatgctggct tccaagcatt tgctgacaaa gtgctggacg ccgctgttgc
    34681 tggcaaaatc actgacgtag aagtcctgaa agcgcagttc gaagaagagc gcgttgctct
    34741 ggttgcgaaa atcggcgaga acatcaacat tcgtcgcgtc gcttccctgg aaggcgacgt
    34801 gctgggttct taccagcacg gtgcgcgcat cggcgttctg gttgccgcta aaggcgctga
    34861 cgaagagctg gttaagcagc tggcgatgca cgttgcggca agcaagccgg aattcgttaa
    34921 gccggaagac gtgtctgctg acgtggtaga gaaagagtac caggtacagc tggacatcgc
    34981 gatgcagtcc ggtaagccga aagaaatcgc agagaaaatg gttgaaggcc gcatgaagaa
    35041 attcaccggc gaagtttctc tgactggtca gcctttcgtc atggaaccga gcaaatctgt
    35101 tggccaactg ctgaaagagc acaacgctga cgtgactggc ttcatccgct ttgaagtggg
    35161 cgaaggcatt gagaaagtcg agactgactt tgcagcagaa gttgctgcga tgtctaagca
    35221 gtcctgattt tcctgaggag ccgcctgagg gcggcttctt tttgcgcctc tcttgtaaaa
    35281 tcagccgacg cctggcgtct gcgctgaaat gcgacgtaca atgtcgccgg aattaactca
    35341 tatcaatcgt tgacagtctc aggaaagaaa catggctacc aatgcaaaac ccgtctataa
    35401 acgcattctg cttaaattaa gcggcgaagc tctgcagggt acggaaggct tcggtattga
    35461 tgcaagcata ctggatcgta tggctcagga aatcaaagaa ctggttgaac tgggtattca
    35521 ggttggtgtg gtgattggcg gtggtaacct gttccgtggc gcgggtctgg caaaagcggg
    35581 gatgaaccgc gttgtgggcg accacatggg catgttggcc accgtcatga acggcctggc
    35641 aatgcgtgat gcgcttcacc gcgcctatgt gaacgcccgc ctgatgtcgg caattccttt
    35701 aaacggcgtg tgcgacaact acagttgggc cgaggctatt agcctgctgc gtaataaccg
    35761 tgttgtgatt ctgtctgcag gtacgggtaa cccgttcttc actaccgact ctgcggcctg
    35821 tctgcgcggg atcgaaattg aagcggatgt cgtactgaaa gcgaccaaag tggatggtgt
    35881 attcactgcc gatccggcaa aagatccttc cgcgaccatg tacgatcagc tgacctacag
    35941 cgaagtgctg gataaagagc tgaaagtgat ggatctggcg gcgttcacgc tggctcgtga
    36001 ccacaaactg ccgattcgtg ttttcaacat gaacaaaccg ggcgcgctgc gtcgtgtggt
    36061 gatgggcgaa aaagaaggga cgttaatcac ggaataattc ccgtgagcgc caaatacggg
    36121 taagattctg ttctattgac gggtcttatt acctggcaga aattaaacga gactatactt
    36181 agcacatctt tatattgtgt gaccgtctgg tctgactgag actagttttc aaggattcgt
    36241 aacgtgatta gcgatatcag aaaagatgct gaagtacgca tggaaaaatg cgttgaagcg
    36301 ttcaaaaccc aaatcagcaa agtgcgcacg ggtcgtgctt ctcccagcct gctggatggt
    36361 attgtcgtag aatactatgg cactccgacc ccgctgcgcc agttggcaag cgtaacggta
    36421 gaagactccc gtaccttaaa aattaacgtg tttgaccgtt ctatggggcc agccgttgaa
    36481 aaagcgatca tggcgtcaga cctcggtttg aatccaagct ctgcgggcac cgatattcgc
    36541 gttccgctgc cgccgctgac cgaagaacgt cgtaaagatc tgacgaaaat tgtccgtgga
    36601 gaagcggagc aggcgcgtgt cgccgtacgt aacgtccgcc gtgatgcgaa cgataaagta
    36661 aaagctctgc tgaaagataa agcgatcagt gaagatgacg atcgtcgctc tcaggaagaa
    36721 gtacagaaaa tgaccgacgc ggcaattaag aaagtggatg cggcgttggc agataaagaa
    36781 gcagaactga tgcagttctg attgatctgt acgcagatat aaactcattc caccgctaaa
    36841 cctggcggat gagtggtgta caaagcgccg cgcagaagac attatcaggt ctcctgtgcg
    36901 gcgttttgct ttttattccg tttcaacact tctggacgtt tcatgaagca attaaccatt
    36961 ctgggctcga ccggctctat tggttgcagc acactggacg tggtgcacca taatcctgat
    37021 agctttcgcg ttatcgcgct ggtggcgggt aaaaatgtcg cccgcatggc ggagcagtgc
    37081 ctggagttct cgccgcgtta tgccgtgatg gacgatacgt cgagcgcaga acagctcaaa
    37141 ataatgcttc agcagcatgg cagccgcacc gaggttctga gcggtcagca ggctgcctgt
    37201 gagatggcgg cgcttgatga ggttgggcat gtgatggcgg ccattgtggg cgcggctggt
    37261 ttactgccga ccttggcggc gatccgcgca gggaagacga ttctgctggc gaataaagaa
    37321 tcgctggtga cctgcgggcg gctgtttatg gacgaagtga aacgcagcaa cgcccggctt
    37381 ttacccgtcg atagcgaaca taacgcgatt tttcagagtt tgccgcaatc tattcagcat
    37441 aatctgggat acgctgacct tgagcaaaat ggcgtaacgt cgattttgct taccgggtct
    37501 ggtggcccgt ttcgtgaaac gcccatgtgc gatctggcag cgatgacgcc ggatcaggca
    37561 tgtcgtcatc cgaactggtc gatggggcga aaaatctccg tcgactccgc caccatgatg
    37621 aataaaggtc tggaatacat tgaagcgcgt tggttattta atgccagcgc acgtcagatg
    37681 gaagtgttga tccatccgca atcggtcatt cattcgatgg tgcgttatca ggacggcagc
    37741 gtcctggcgc agcttggaga acctgacatg cgtacgccta ttgcgcatac gatggcatgg
    37801 ccgaatcgcg tcacgtccgg cgcgcagccg ctcgattttt gcaaactcag cgcgctgacg
    37861 tttagcgcgc cagattatca gcgttatcct tgcctgaagc tggcgatgga ggcgtttgag
    37921 caaggtcagg cggcaacgac ggcgctcaat gcggcaaacg aaatcaccgt tgccgcgttt
    37981 ctggcgcaac agattcgttt taccgatatc gccgggctca atttagcggt gctggagagg
    38041 atggatttac acgaaccggc aagcgttgat gacgtattgc aggttgacgc catcgcgcgt
    38101 gaagtagcca gaaaacaagt gatacggctc tcacgctgac gattatcccg cgacagaaga
    38161 tcgtgctatt tgttagcgtt gggcttcggt gatatagtct gcgccacctg atcgcaggtt
    38221 tttggctttt ttcggtcagg ttagccgtgg ttttacacgg cttttttgtg gatacacaaa
    38281 atcattcagg acgcatcggg acggcaggcg gatacgttcc cggcgtgcgc agacagcgca
    38341 cgacaggggc gatgacgcgc agtcattcgc gaagcgaacc gaagagaatg tgtataaagg
    38401 cttcagtatt cctgagtacc gctaaatcct ttcagggaca aaaaacgcgt tatgttgtct
    38461 gcaactcaac cagtaagcga aaatttgcca gcacatggct gccgtcatgt tgccataatt
    38521 atggatggca atggccgctg ggcgaaaaag caagggaaga tccgggcctt tgggcataaa
    38581 gccggggcga agtccgtccg gcgagcggtc tcttttgctg ccaataacgg tattgatgcg
    38641 ttaacgctgt atgcctttag tagtgaaaac tggaaccgac cagcgcagga agtgagcgcg
    38701 ttaatggagc tgtttgtgtg ggcgctggat agcgaagtca aaagcctgca ccgccataac
    38761 gttcgcctgc gtattatcgg cgatatcagc cgatttaact cacgtttaca agaacgtatt
    38821 cgcaaatcag aagcgcttac cgcccataat acggggctaa cgttgaatat cgctgcgaat
    38881 tacggcggac gttgggatat tgtccaggga gtccgacaac tggcggagct ggtgcaggct
    38941 ggagtgctgc gccccgatca gattgatgaa gagagactag gccagcaaat ctgtatgcat
    39001 gagctggcgc ctgtggattt agtaattagg actgggggag agcatcgcat tagtaacttt
    39061 ttgctttggc aaattgccta tgccgaactt tactttacgg atgttctctg gcccgatttc
    39121 gatgaacaag actttgaagg tgcgctgcat gcctttgcta atcgagagcg tcgtttcggc
    39181 ggtaccgagc ctggtgatga caaagcctga tgggggtcgc ttttgctgaa gtatcgcctg
    39241 atttctgctt ttgtgttaat acccgcggtc atcgctgcgc tttttttatt gccgccggtg
    39301 gggttcgcca ttattacgct ggttgtctgt atgctggccg cgtgggaatg ggggcagtta
    39361 agcggtttcg ccgcgcgttc acagcgggtt tggctggcgg tgctgtgtgg tctgttattg
    39421 gcgctgatgt tatttttgtt gcctgagtat catcacaaca ttcgtcaacc gctggttgag
    39481 atgtcgcttt gggcatcgtt aggatggtgg gttgtcgcgc tactgctggt gctattttat
    39541 cccggttcgg cggcaatctg gcgcaactca aaaacattgc gtctcatttt cggtttgtta
    39601 actattgtgc catttttctg gggcatgctg gcgctgcgcg cctggcacta tgacgagaat
    39661 cattacagtg gcgcaatatg gttactctat gtcatgatcc tggtctgggg agcggactct
    39721 ggcgcgtata tgtttggtaa attgtttggc aaacataagc tggcgccgaa ggtttccccg
    39781 ggtaaaacct ggcaagggtt tatcggcggg cttgctacgg ctgccgtgat ctcatggggt
    39841 tacggtatgt gggcgaatct gaatgttgcg cctgttatct tgctgatttg ctctgtggtg
    39901 gcggctctgg cttctgtact gggcgacctc accgagagta tgtttaagcg cgaagcagga
    39961 attaaggata gcggccactt gatcccaggc catggcggca ttctggaccg aattgacagt
    40021 ctgacggctg ccgtaccggt ctttgcttgc ctgttgttac tggtgttcag gacgctctaa
    40081 cggaaggttt tatgctgagt attctctgga atctggctgc attcatcatc gcactgggcg
    40141 tgctgatcac tgtgcatgaa tttggtcatt tctgggttgc ccggcgctgc ggtgtgcgag
    40201 ttgagcgctt ttccatcggt tttggcaaag cgctctggcg tcgtaccgat cggtacggca
    40261 ccgagtatgt catcgccctg atcccgctgg gcggctacgt caaaatgctg gatgagcgcg
    40321 ccgaaccggt agcgccggaa ttgcgtcgtc acgccttcaa taacaaaacg gtgggccagc
    40381 gcgccgcaat tattgccgca ggtccggttg cgaacttcat ttttgctatc tttgcttact
    40441 ggctggtctt tatcatcggc gtccctggcg ttcgtccggt cattggcgaa ataacgccca
    40501 actcgattgc tgcgcaggcg caaattgcgc ctggtacgga acttaaagcc gttgatggta
    40561 tcgaaacccc tgattgggat gccgtgcgtt tacaactggt gtccaaaatt ggcgatcagc
    40621 agacgacggt gagcgtcgcg ccgtttggca gcgaccagcg gcaggacaaa acgcttgatt
    40681 tacgtcactg ggcatttgag cctgataagc aagatcctgt atcttcttta gggattcggc
    40741 cccgcgggcc acagattgaa ccggtactgt cagaagtgca ggcgaattcc gcagccagta
    40801 aagcgggttt gcaagcaggc gacaggatcg ttaaagtcga tggtcagccg ttaacgcagt
    40861 ggatgaaatt cgtgacgttt gtacgtgata atcccggtaa gccgttagcg ttagagattg
    40921 aaaggcaggg gagcgccttg tcgttgacgt taacgccgga tacgaaatcg gttaacggaa
    40981 aggcggaagg gtttgcaggc gtggtgccta aaattattcc tctgccggaa gagtacaaga
    41041 ctatacgcca gtatgggcct tttagcgcca tcctcgaagc cacggataag acgtggcagt
    41101 tgatgaagct gacggtcaat atgctgggta aattgataac cggtgatgtg aaactgaaca
    41161 acctcagtgg gccgatttct atcgctcagg gggctgggat gtcagcggag ttcggggtga
    41221 tttattacct gatgttcctt gcgctaatca gcgtgaactt agggataatt aacctgtttc
    41281 cgctgcccgt tcttgacggg ggtcatctgc tgttcctggc gattgaaaag cttaagggcg
    41341 ggccggtatc cgagcgggtt caagacttta gttatcgcat tggctcgatt ttgctggtgt
    41401 tgttaatggg gcttgcactt ttcaatgatt tctctcggtt gtaagagagt tagttaggaa
    41461 gaacgcataa taacgatggc gatgaaaaag ttgctcatag cgtcgctgct gttcagcagc
    41521 gccaccgtat acggtgctga agggttcgta gtgaaggaca ttcatttcga aggcctgcag
    41581 cgagtcgccg ttggtgcggc tctcctcagt atgccggtgc gcacaggcga cacggttaat
    41641 gatgaagata tcagtaacac cattcgcgct ctgttcgcca ccggcaactt tgaggacgtc
    41701 cgcgtcctgc gcgatggtaa tacccttctg gttcaggtaa aagaacgtcc gaccattgcc
    41761 agcatcactt tctccgggaa caagtcggtg aaagatgaca tgctcaagca aaacctcgaa
    41821 gcgtctggcg tacgtgttgg cgagtctctg gatcgcacca cgctgtctga tatcgaaaaa
    41881 ggtctggaag acttttacta tagcgtaggt aaatacagcg ccagcgttaa ggcggtcgtc
    41941 acgccgctac cgcgcaaccg tgttgatctt aaactggtgt tccaggaggg cgtatcggcg
    42001 aagatccaac agatcaacat cgtcggtaac catgccttta gcaccgaaga actcatttct
    42061 catttccagt tgcgtgacga agtgccgtgg tggaacgtcg tcggcgatcg taaataccag
    42121 aaacagaagc tggcgggcga ccttgaaacc ttgcgcagct actatctgga tcgcggctac
    42181 gcgcgtttca atattgactc cacgcaagtg agtctgacgc cggataagaa agggatctac
    42241 atcaccgtca atatcaccga aggcgatcag tacaagcttt ccggggttca ggtgagcggt
    42301 aacctggccg gacattccgc tgaaattgag aaactgacga aaattgaacc gggcgagctc
    42361 tataacggca ccaaagtgac caaaatggaa gatgacatca aaaagcttct gggtcgctat
    42421 ggttacgcct atccgcgcgt gcagtcacag cctgaaatta acgatgctga caaaaccgta
    42481 aaactgcgcg tgaacgtcga tgcgggcaac cgtttctacg tgcgtaagat ccgctttgaa
    42541 ggcaacgata cctcaaaaga ttccgttctg cgccgtgaaa tgcgccagat ggaaggggcg
    42601 tggctgggca gcgacctggt tgaccagggg aaagagcgtc tgaaccgtct cggcttcttt
    42661 gaaaccgtcg acaccgacac gcagcgcgtt ccggggagcc cggatcaggt tgatgtggtg
    42721 tacaaggtga aagagcgtaa caccggtagc ttcaacttcg gtatcggtta cggtacagaa
    42781 agcggcgtga gcttccaggc cggcgttcag caggacaact ggttaggtac cggttattcc
    42841 gtggggatta acggtaccaa aaatgactac cagacctaca gcgaactgtc cgttactaac
    42901 ccatacttta ccgttgacgg cgtgagcctc ggtggtcgta tcttctataa cgactttgaa
    42961 gcggatgatg ccgacctgtc cgactatacc aacaagagtt acggtacgga tgtgacgctt
    43021 ggcttcccca tcaacgagta caacacgttg cgtgctggtc tgggctatgt ccataacaaa
    43081 ctgtccaaca tgcagccgca gatcgcgatg gatcgttatc ttgaatcgat gggcgaccct
    43141 gatgccagcg attttgccgc tgacgacttc acctttaact acggctggac ctataacaag
    43201 cttgaccgtg gttatttccc gacggacggc tcgcgagtca acctgacggg taaggtgacg
    43261 attccaggtt ccgacaacga atactacaaa gtgtcgctgg ataccgcgac ctatgtgcct
    43321 attgataacg accacaagtg ggtggttctg gggcgtactc gttggggtta cggcgatggt
    43381 ttaggcggca aggaaatgcc gttctatgag aacttctatg ccggtggttc cagtaccgtg
    43441 cgtggtttcc agtcgaatac tatcggcccg aaagcggtct ataaaaatgg cgcccacact
    43501 agttgggacg atgatgatga ttacgaagac tgtactcagg aatcaggctg taaatcagat
    43561 gatgcggtag gtggtaatgc catggctgtc gccagcctgg aatttattac cccgacgccg
    43621 ttcatcagcg aaaagtatgc caactcggtt cgtacctcct tcttctggga tatgggtacc
    43681 gtttgggata cgaactggga tccgtcatct gcgccgtcag atgtaccgga ttacagcgat
    43741 ccaggcaaca tccgtatgtc cgcgggtatc gcattacaat ggatgtcccc attggggccg
    43801 ttggtcttct cctacgccca gccgtttaaa aagtacgatg gagacaaagc cgagcagttc
    43861 cagtttaaca ttggtaaaac ctggtaattg ttcactgcaa aggaatgcat tggtagtgta
    43921 gcgatgactt ttggcgatgc ccccagggat cgccaggcca cgcaaagagc tgtaccttcg
    43981 ggtgcaaatg ggatggtaag gagtttattg tgaaaaagtg gttattagct gcaggtcttg
    44041 gtttggcgat ggttacgtcc gcacaggctg ctgacaaaat tgcaatcgtc aacatgggta
    44101 atctgttcca acaggttgcg cagaagacgg gtgtatccaa tacactggaa aacgaattta
    44161 aaggccgtgc ggctgaactg caaaaaatgg aaaccgatct gcaatctaaa atgcagcgtc
    44221 tgcaatccat gaaagcaggt agcgatcgta ctaagctgga aaaagacgtg atgtctcagc
    44281 gccagacttt cgcacaaaaa gcgcaggctt ttgagaaaga tcgcgctcgt cgttccaacg
    44341 aagaacgcaa caaactggtg actcgtatcc agactgcggt gaaaaaagtg gctaacgacc
    44401 agagtatcga tctggtggta gacgcaaaca ccgttgctta caacagcagc gatgtgaaag
    44461 acatcaccgc tgacgtactg aaacaggtta aataagtaat gccttcaatt cgactggctg
    44521 acttagcaga acagttggat gcagaattac acggtgatgg cgatatcgtc atcaccggcg
    44581 ttgcgtccat gcaatctgca acaacaggcc acattacgtt tatggtaaat cctaagtacc
    44641 gtgaacactt aggtttatgc caggcttctg cggttgtcat gacgcaggac gatcttcctt
    44701 ttgccaagag cgcggcgctg gtagttaaaa atccctacct gacctacgcg cgcatggcgc
    44761 aaattttaga tactacgccg caacccgcgc agaatatcgc gccaagcgcc gtgattgatg
    44821 cgacggcaac gctgggtagc aatgtttcag tcggcgcgaa tgcggtgatt gaatctggcg
    44881 tacaactggg cgataacgtg gttatcggcg caggctgttt cgtcggaaaa aatagcaaaa
    44941 tcggggcggg ttcacgcttg tgggcgaacg taacgattta ccacgacatt cagatcggtg
    45001 agaattgcct gatccagtcc agtacggtga tcggcgcgga cggttttggc tacgctaacg
    45061 atcgtggcaa ctgggtgaag atcccacaac tgggccgggt cattattggc gatcgtgtcg
    45121 agatcggcgc ttgtaccacc attgaccgtg gcgcgttgga tgatactgtt attggcaatg
    45181 gcgtgattat tgataatcag tgccagattg cacataacgt cgtgattggc gacaatacgg
    45241 cagttgccgg tggcgtcatt atggcgggta gcctgaagat tggccgttac tgcatgattg
    45301 gcggcgccag cgtgatcaat gggcatatgg aaatatgcga caaagtcacg gtaactggca
    45361 tgggtatggt gatgcgtccc atcacggaac cgggcgtcta ctcctcaggc attccgctgc
    45421 aacccaacaa agtatggcgt aaaactgctg cactggtgat gaacattgat gatatgagca
    45481 agcgtctcaa agcgattgag cgcaaggtta atcaacaaga ctaacgttcc gccttgtagt
    45541 tgccattctt ttccggcctg tcacattcat acgattgcgg caggccgtgt tattattgcc
    45601 tttttgtata tttggacagg aagagtattt tgactactaa cactcatact ctgcagattg
    45661 aagagatttt agagcttctg ccgcaccgtt ttccgttttt actggtcgat cgcgtgctgg
    45721 actttgaaga aggtcgtttt ctgcgtgcgg tgaaaaatgt ctccgtcaac gagccgtttt
    45781 tccaggggca tttcccgggc aaaccgattt tgccaggcgt gctgattctg gaagcgatgg
    45841 cgcaggcaac cggtattctg gcgtttaaaa gcgttggtaa actggaacct ggcgaactgt
    45901 attatttcgc gggtattgat gaagcgcgct ttaagcgtcc ggtggtgcca ggcgatcaga
    45961 tgatcatgga agtcactttc gagaaaacgc gccgtggcct gacccgcttt aaaggggttg
    46021 cgctggtcga cggtaaagtt gtgtgcgaag caaccatgat gtgtgctcgt agccgggagg
    46081 cctgattcgt gattgataaa tccgtcttta ttcatcctac cgccattgtg gaagacggcg
    46141 ctgtaattgg cgctaatgcc cacattggtc ccttttgtat tgttgggccg caggtcgaaa
    46201 ttggtgaggg aaccgtactg aagtctcatg tggtcgtaaa tggtcaaacc aaaatcggcc
    46261 gcgacaacga gatttatcag tttgcctcca tcggtgaagt gaaccaggat ctgaaatatg
    46321 cgggtgagcc aacccgtgtg gaaattggcg atcgtaaccg catccgcgaa agcgtcacca
    46381 ttcatcgtgg tacagtgcag ggcggtgggt tgacgaaggt gggtagcgat aacctgctga
    46441 tgatcaatgc gcatgtcgca catgattgta cggtaggtaa tcgctgtatc ctcgccaaca
    46501 acgccacgct ggcggggcac gtatcagtcg atgattttgc gatcatcggc ggtatgacgg
    46561 cagttcatca attctgcatt atcggtgcgc atgtgatggt cggcggctgc tccggcgtgg
    46621 cgcaggatgt ccctccgtat gtgattgcgc agggtaacca tgcgacgccg ttcggggtaa
    46681 atatcgaagg gctgaagcgt cgcggcttta gccgtgaagg gctggtggcg attcgtaatg
    46741 cctacaaact gttgtaccgc agtggtaaaa cgctcgacga agcgaagctg gaaatcgctg
    46801 aacttgctga aaagcatccg gaagtgaagg cgtttaccga gttctttgag cgttcaacgc
    46861 gcggtccgat tcgttaatgg cggcacagcg tcctttaacg attgccctgg tcgccggtga
    46921 aacgtccggc gatattcttg gcgcaggctt aattcgtgcg ctgaaagcgc gcgtacccaa
    46981 cgcccgtttt gtgggcgttg cggggccgcg tatgcaggcc gaagggtgtg aagcctggta
    47041 cgagatggaa gagctggcgg tcatgggcat tgttgaagtg ctcggacgtt tacgccgttt
    47101 gttgcatatc cgcgccgatc tgacccgccg ttttaccgaa ctcaagcccg atgtctttgt
    47161 cgggattgat gcccctgatt tcaatattac cctcgaaggt aatctgaaaa aacaagggat
    47221 taagaccatt cattatgtca gcccgtccgt ttgggcctgg cgacagaaac gcgttttcaa
    47281 aataggcaga tccacccata tggtgttggc ttttctgcct ttcgaaaaag cgttttacga
    47341 taaatttaac gtcccgtgcc gctttatcgg tcacaccatg gcggatgcca tgccgctgga
    47401 cccggataaa aatgcggcgc gcgacgtgct gggtatcccg catgacgccc attgtctggc
    47461 gctactgcca ggcagccgtg gcgcggaagt ggaaatgctc agcgccgact tcctgaaaac
    47521 cgcacaattg ctgcgacagc gctatcccga tctggaagtg gtagtgccgc tggtgaacgc
    47581 gaaacgccgc gagcagtttg aaaaaattaa agcggaggtt gcgccggatc tcgccgttca
    47641 tttgctggac ggcatggcgc gcgaggcgat gatcgccagc gacgcggcgt tgctggcctc
    47701 aggcacggcg gcactggagt gtatgctggc aaaatgcccg atggtagtgg ggtatcgtat
    47761 gaagcccttc actttctggc tggcgaaacg tctggtgaaa acggagtatg tgtctttgcc
    47821 taacctgctg gcgggaagag aattagtcaa agagctgttg caggaagagt gcgaaccgca
    47881 aaaactcgcc gaagcgctgt tgccgctact ggcgaacggt aaaaccagcc atgcgatgca
    47941 cgacaccttc cgtgaattgc atcagcagat ccgctgtaat gccgatgagc aggcggcaga
    48001 tgccgtcctg gagttagcac aatgatcgaa tttgtttatc cacacaccca tttagtggcg
    48061 ggtgtggatg aagtgggccg tggcccgctg gtgggcgccg tagtgaccgc cgccgtgatc
    48121 ctcgatccgg cgcgtccgat cgtcggtctg aatgattcca aaaaattgtc tgaaaagcgt
    48181 cgtctgtcat tgtatgacga gattaaagaa aaggcgttaa gctggagtct gggacgcgcg
    48241 gaagcgcatg aaattgatga gctgaatatt ttgcacgcca ccatgctcgc catgcagcgc
    48301 gctgtcgctg gtctgcatat tgcgccagaa tatgtgctga tcgacggcaa tcgctgtccg
    48361 gagctgcctg tgccgtcaat ggccgtggtg aaaggcgaca gccgcgtggc ggagattagc
    48421 gcggcgtcta ttctggcgaa agtcacccgc gacgcagaaa tggcggcgct ggatatcgtt
    48481 tttcctcagt atggctttgc gcagcacaaa ggctatccaa ccgcttttca tctggaaaag
    48541 ttggcccagt atggcgcgac ggcgcaccac cgacgcagtt ttgcgcctgt taaacgcgct
    48601 ctgggacttg tgtcctgatt cttgtatcga gaaatctgaa gatgtctgaa ccacgtttcg
    48661 ttcacctgcg ggtgcacagc gactactcta tgatcgatgg gctggcgaag accgggccgc
    48721 tggtgaaaaa ggcggcctca ttaggtatgc ctgcgctggc gatcaccgat tttaccaacc
    48781 tctgcggtct ggtgaagttc tacggagcgg gtcatggcgc gggcattaaa cccatcgtcg
    48841 gggcggactt taacgttcac aacgaactgc tgggagatga gctgactcat ctgacggtac
    48901 tggcggcgaa taatacggga taccagaacc tgacgttgct gatctcgaaa gcgtatcagc
    48961 gcggctacgg cgcggcaggc ccgattatcg agcgcgactg gctggtagag cttaaagaag
    49021 gtttgatcct gctttccggc gggcgcatgg gcgacgtagg ccgctgtctg ctacgcggca
    49081 accaggcgct ggtggaggag tgcgttgctt tctatgaagc gcattttccc gatcgctact
    49141 tcctggaact gatccgtacc ggcagacagg atgaagagac ctatctccat gctgcggttg
    49201 agctggctga ggcacgtggt ttgccggttg tcgcgacaaa cgatgtccgt ttccttgaaa
    49261 gcgatgattt tgacgcccat gagattcgtg tcgcgattca cgacggtttc acgctcgacg
    49321 atcctaaacg tccacgcaat tattcaccgc agcagtatat gcgcagtgaa gaagaaatgt
    49381 gcgagctgtt ctccgatatt ccggaggcgc tggaaaatac ggtggagatt gccaaacgct
    49441 gcaacgtaac ggtgcgtctg ggtgaatatt tcctgccgca gttcccgacc ggcgatatga
    49501 ccaccgaaga ttatctggtc aaaaaatcga aagaggggct ggaagagcgt ctggctttcc
    49561 tgtttccgga cgaagaagag cgcaaaaagc gtcgcccgga atatgacgag cgtctggata
    49621 ttgaactaca ggttatcaac cagatggggt tccctggcta cttcctcatc gtgatggagt
    49681 ttatccagtg gtcaaaagat aacggcgtgc cggtagggcc gggacgtggt tccggggccg
    49741 gttcgctggt ggcctacgcg ctgaaaatta ccgaccttga tccgctggaa tttgacctgc
    49801 tgttcgaacg tttcctgaac ccggaacgtg tctcgatgcc tgacttcgac gttgacttct
    49861 gtatggagaa acgcgaccag gtgattgagc acgtcgcaga catgtacggg cgtgatgcgg
    49921 tatcgcagat tatcaccttc ggtacgatgg cggcgaaagc cgttatccgc gatgtgggcc
    49981 gcgtgctggg gcatccgtac ggttttgtcg atcgtatctc gaagctggtg ccgcccgatc
    50041 cgggcatgac gctggcaaaa gcctttgaag cggaaccgca actaccggaa atttacgagg
    50101 cggatgaaga ggtcagagcg ctgatcgata tggcgcgtaa gctcgaaggc gtcacgcgta
    50161 acgccggtaa gcacgctggc ggcgtggtca tcgcgccgac caaaattacc gactttgcgc
    50221 cgctgtactg cgatgaagag ggcaagcatc cggttaccca gtttgataaa agcgacgtgg
    50281 aatatgccgg gctggtgaag ttcgacttcc tcggtttgcg tacgctgact atcatcaact
    50341 gggcgctgga gatgatcaac aagcggcggg cgaagaatgg cgagccaccg ctggatatcg
    50401 ccgccattcc gctggacgat aaaaaaagct tcgacatgct gcaacgctcg gaaaccacgg
    50461 cggtcttcca gcttgaatcg cgcggtatga aagacctgat caagcgtctg caacctgact
    50521 gctttgaaga tatgatcgcg ctggtggccc tgttccgtcc cggcccgttg cagtcaggga
    50581 tggtagataa ctttatcgat cgtaagcacg gtcgtgaaga actctcttac ccggacgttc
    50641 agtggcagca tgaaagcctg aagccggtac tggagccgac ctacggcatc attctgtatc
    50701 aggaacaggt gatgcagatt gcccaggtac tttccgggta tactctcggt ggcgcggata
    50761 tgctgcgtcg tgcgatgggt aagaaaaagc cggaggagat ggccaaacag cgttccgttt
    50821 ttgaagaggg cgcgaaaaag aacggtatcg acggcgaact ggcgatgaaa atctttgacc
    50881 tggtggagaa attcgccggt tacgggttta acaaatcgca ctccgccgct tatgcgctgg
    50941 tttcttatca gacgctatgg ctaaaggcgc actatccggc tgaatttatg gcggcggtga
    51001 tgactgccga tatggacaac accgagaagg tcgtcggcct ggtagacgag tgctggcgga
    51061 tgggactgaa aattctgccg ccggatatta actccggatt gtaccatttc cacgttaatg
    51121 atgagggcga gatcgtctac ggcatcggcg cgatcaaagg cgtcggcgaa gggccgatcg
    51181 aagcgatcat cgacgcgcgt aatcagggcg gctatttccg cgaactgttt gatctgtgcg
    51241 cgcggaccga caccaaaaag ctcaaccgcc gggtgctgga aaagctgatc atgtccgggg
    51301 cgttcgaccg cctggggccg caccgcgccg cgctgatgaa ctcattgggc gatgcgctga
    51361 aagccgccga ccagcacgcc aaagcggaag ctatcggtca ggcggatatg ttcggcgtac
    51421 tggcggaaga gccggagcaa atcgaacaat cctatgccag ctgccagccg tggccggagc
    51481 aggtggtgtt agatggggaa cgtgaaacgt tggggctgta cctgacgggc caccctatca
    51541 atcagtattt aaaagaaatt gagcgctatg tcggcggggt aaggctcaaa gacatgcatc
    51601 cgacagaacg tggtaaagtc accacggctg cggggctcgt gattgccgca agggttatgg
    51661 tcaccaagcg cggcaatcgt atcggcatct gtacgctgga tgaccgttcc gggcgtctgg
    51721 aagtgatgtt atttaccgac gcgctggata aataccagca gttgctggaa aaagaccgca
    51781 tacttatcgt cagcggacag gtcagctttg atgacttcag cggggggctt aaaatgaccg
    51841 cccgcgaagt gatggatatt gacgaagctc gcgaaaaata cgctcgcggg cttgctatct
    51901 cgctgacgga caggcaaatt gatgaccagc ttttaaaccg actccgtcag tctctggaac
    51961 cccaccgctc ggggaccatt ccagtacatc tctactatca gagggcggat gcgcgtgcgc
    52021 ggctgcgttt tggcgcaacg tggcgtgtct ctccgagcga tcgtttactt aacgatctgc
    52081 gtggcctcat tggttcggag caggtggaac tggagtttga ctaatacagg aatactatga
    52141 gtctgaattt ccttgatttt gaacagccga tagcagagct ggaagcgaaa atcgattctc
    52201 tgactgcggt aagccgccag gatgagaaac tggatattaa tatcgatgaa gaagtccatc
    52261 gcctgcgcga aaaaagcgta gaactgacgc gcaaaatctt cgccgatctc ggcgcatggc
    52321 aggtagccca actggcgcgc catccgcagc gtccgtacac cttggattat gtccgtctgg
    52381 cgtttgatga gtttgatgag ctggcgggcg atcgcgccta tgctgatgac aaagccatcg
    52441 tcggcggtat cgcgcgtctg gaagggcgac cggtgatgat cattggtcat cagaaaggtc
    52501 gtgaaaccaa agaaaaaatt cgtcgtaact ttggcatgcc agcgccggaa ggctaccgca
    52561 aagcgctgcg cctgatggaa atggctgaac gcttcaacat gccgattatc accttcatcg
    52621 acaccccggg cgcttaccct ggcgtgggcg cggaagagcg tggtcagtct gaagctatcg
    52681 cccgcaacct gcgtgagatg tctcgtctga acgtaccggt catctgcacc gtgattggcg
    52741 aaggcggctc cggcggcgca ttggcgattg gcgtgggtga taaagtgaat atgctgcaat
    52801 acagcaccta ttccgttatc tccccggaag gttgcgcctc tattttgtgg aagagcgccg
    52861 acaaagcgcc attggctgct gaagcgatgg gcatcatcgc gccgcgtctg aaagagctga
    52921 agctaatcga ttccatcatt ccggagccgc tgggcggcgc gcaccgtaat ccggaagcga
    52981 tggcggcgtc gctaaaagcg cagctgctgg aagatttagc cgatctcgat gtgttaagca
    53041 ccgatgattt aaaaaaccgt cgttaccagc gtttgatgag ctacggttac gcctaatcat
    53101 ttacctcatt tctcccagga ggccggataa tccggcctct tttttgtcta tggaaa
//
LOCUS       DAJVSD010000004        52044 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.004, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000004 DAJVSD010000000
VERSION     DAJVSD010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 52044)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 52044)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..52044
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.004"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            257..646
                     /locus_tag="OQP62_000148"
     CDS             257..646
                     /locus_tag="OQP62_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000993573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1719802.1"
                     /translation="MNAQARGARAARLYKRAKSKLISLDHFCVQKAREHKLPAWTGHL
                     PVTTLTGILFAAVIFGSLLFVSLGLFIFALILVTSWPGKRTNSADSWSDNSWGSSMRD
                     GSEGFGLYTGPENSHIPTSRIDNEDDL"
     gene            complement(682..2187)
                     /locus_tag="OQP62_000149"
     CDS             complement(682..2187)
                     /locus_tag="OQP62_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003029772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
                     /protein_id="HCS1719803.1"
                     /translation="MTTSSYLEYILTILGWVVNNGLWDVLTGTGLFALPLGFKIIGIW
                     IKTREEGDDEGNKGILSARRMEHAIYGAFIVIIACCVPTQTVSLTTLTFDTTRAKQCG
                     FWTPVKPGDSGYGSVVSTMSGMTASAPVWWAFMHMISKGVTQAAVASLPCRPDLRQVR
                     FDVQHTQITNPALAQELQDFTSDCYAQAFALWKRQDAGRTTDIDVLRDIEWLGSKIFL
                     KDFYPQLHSKLPRSAFPWSQSRDDGYANTGQGGYPTCSEWWSQNKTGLKSRVLDTVNT
                     TTMTRMAAAFKGMVSKEEYTEALIRRLVSPTSLSVSQNGRTYAGYGGNADFTLDNAVN
                     RMASVLGTSVGALGAFPAFDAMRQALPMVQALLLMAMYVLIPLVLVFGTYEYKTVVTL
                     TFVTFGMHFLTFWWELARWLDSWLLEIMYGSDSHSRWNVAGFQNSADDLIMNFVMGTM
                     FLVLPAVWMGALSWAGVRIGGIVDTNLNKGVQPAGQHGGKVGDKIGSGIAK"
     gene            complement(2520..3950)
                     /locus_tag="OQP62_000150"
     CDS             complement(2520..3950)
                     /locus_tag="OQP62_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HCS1719804.1"
                     /translation="MRSQSILSVCLMLGIVSSGPLSAALLDAPTLSGDGYGKSVNGAV
                     SDKLFYSIGGGSVISTPGTMYGMKRIGLDAGLSSDLMCGNFDIKTTVGNQLNGVTNGF
                     KDLMGDVITGATGAVSSMPAMILQRANPGLYEMITNGVLQAGLAFDKSKLNCESMANK
                     LADYTLGDKSSWTESAVREEYKEAVSASGGDALRAEEARTKASGKEGATWVGGKKAGG
                     KGQPAIQPTRDLAKAGYNMMNNLSVTSNSTVSAGSCKGSACQKFKNSEEAAAAVVKVL
                     GDRSIRTCKDATECGSGGIDNAQGTTIAGTGFAPMLEDTTKENLEQLVKLVNGTEAPT
                     QANLDKIKSGSLKVTRGVIDALKRDPDAGALVQRLAGELAMSDTIETGLAMRRMLTTG
                     QSEPNAADQPQAMAEADRRIEALDRELNSLKLEMELRREVAKNTALVVVAREENRSVT
                     NPQKESQTNADTRLSELETRKPGDSQ"
     gene            complement(3965..4933)
                     /locus_tag="OQP62_000151"
     CDS             complement(3965..4933)
                     /locus_tag="OQP62_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000838927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03756 family integrating conjugative element
                     protein"
                     /protein_id="HCS1719805.1"
                     /translation="MKSLRLKRALLSVMLITGGMEVQAALNTASIVASSISPSCISWR
                     ISGICYWLMCTPFGCTVKTSIKVHHFIPEAVVSTYQASGGNPWTEMSLVSQTAGGVEN
                     AVTGALSGLAAGGGNQEQKFPGTRKSNVRFKYADAIGHPSTSIIGGQIPGYSCNSAAT
                     PLVPYFLSTLDTLAWRTGVPESVYPEALIPGRREIGSTSAQNIWGNLYPRSGFVTQQD
                     DYKSGAIVAQRVADIITRTNQIHVYKPLTGNPSAGYWPPEPVKENTGTQNHKWQQLSP
                     TLSMSCSVFPDTGKIAENGNYAWTLWQPYSCCKRRGQTFLYSTDIN"
     gene            complement(4930..5322)
                     /locus_tag="OQP62_000152"
     CDS             complement(4930..5322)
                     /locus_tag="OQP62_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000821941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03757 family integrating conjugative element
                     protein"
                     /protein_id="HCS1719806.1"
                     /translation="MKRILSSLILISSFSASAQIVVYTDQGHPPVGVTPAIRVVYLDA
                     SERWLQQQFGELSSDPEQAVRQAHSLLNSPDWKRRQKALIEHYRGMIEAWQLGLLKYP
                     AVVFDNRDVVYGTVDISRAVALRRGENQ"
     gene            complement(5477..5863)
                     /locus_tag="OQP62_000153"
     CDS             complement(5477..5863)
                     /locus_tag="OQP62_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000054770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1719807.1"
                     /translation="MSLLKHEQWLILGEDESHRIPPDALLGLPPQGKAWIRKEHDEDM
                     SRLTSHIQGALGNTYRGVCHPQRIGHRACLAIHLENLRGKKLDILITVSGKTALPAEE
                     SYVNPRWYIDVADAADALYLALWLIR"
     gene            complement(6018..8823)
                     /locus_tag="OQP62_000154"
                     /pseudo
     CDS             complement(6018..8823)
                     /locus_tag="OQP62_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000253395.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer ATPase"
     gene            complement(8823..9272)
                     /locus_tag="OQP62_000155"
     CDS             complement(8823..9272)
                     /locus_tag="OQP62_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000244536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03751 family conjugal transfer lipoprotein"
                     /protein_id="HCS1719808.1"
                     /translation="MVLTDNQKITSRTVKITPVLFFIAGMFSVALGGCSSSKDELLPP
                     GDSSMMELWQGNAPTSHAVVKGRETLRRSLSSQETLASGRIDESYSRTQENELSQIFP
                     RLPNPDMVMYIFPHLANGNTPVPGYSTVFPFYAQTQYALPGERTEAL"
     gene            complement(9259..10737)
                     /locus_tag="OQP62_000156"
     CDS             complement(9259..10737)
                     /locus_tag="OQP62_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015606328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HCS1719809.1"
                     /translation="MQIKANGLMKVLLPVLIVVVCFIGVKACGLKDTTEPEPAKTTNA
                     LTELSQDDLKALGIEGDTSADTLRTLIGALRDVRARQAVLDEQNKALISENNKLKGEN
                     SSVGLQISNAVNAAKQETNEALEKQKTFLLEKLNDLTGTLKSQGQNTDMVSTGSSSGT
                     DFPVGLGLDPENASSATQGEVIWISPQDAKKTEGQSQSDNDKFTFPTSFLDDNPVSRQ
                     RAEYDRVVKNKQELDGNGAESDTRPVYTLPENSTLVGSKAMTALIGRIPINDKVTDPY
                     PFKVLIGKDNLTANGIELPDVEGAIVSGTATGDMVLSCVRGTIHSITFVFSDGRIRTL
                     PRPVANTQGNNNDNAGDRGSIGWISDNNGIPCISGERKSNASTYLPTVALLGMGSSAG
                     DALTQNQYTTQNNVNGGVTSALTGNAGQAVLGQTLGGGFKEVTDWVKQRYGQTFDAVY
                     VPPGANVAIHITRQLAVDYEDHGRKVRYDFSLPGTGGHYGLD"
     gene            complement(10727..11626)
                     /locus_tag="OQP62_000157"
     CDS             complement(10727..11626)
                     /locus_tag="OQP62_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001240640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03749 family integrating conjugative element
                     protein"
                     /protein_id="HCS1719810.1"
                     /translation="MAMFKVLNFKCKWWPIILLLWFSSAQAVELMKWERIPLLIPLSV
                     NHERIVFVDRNVRVGFPAMLKGKLRVQSSGGTVYLQASEPFEQTRLQLQDVESGEIIL
                     LDIAAKNDNKALEPVRLVYSGEVLSVSEKGMETGSSLPVASLDTEDKNQTVRKTPVYS
                     APLPVVLTRYAAQSLYAPLRTVEAVPGIHPVNLRLPSRLTTLYPSENVVVSPIGAWGI
                     QELNVVALKIRNRSSSKVILDARTLSGSFVSATFQHRWLGAAGTPEDTTTLYLVIRGR
                     PENAFIAEPAVLPAVKKGEQHAN"
     gene            complement(11626..12279)
                     /locus_tag="OQP62_000158"
     CDS             complement(11626..12279)
                     /locus_tag="OQP62_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016808259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03746 family integrating conjugative element
                     protein"
                     /protein_id="HCS1719811.1"
                     /translation="MSRFRHALKDRDQHILTLRLACGVLLLLLILVITGWMRAPSDLT
                     IHNPPDLRSGSTRKWWEVPPSTVYSFAFYIFQQINAWPKDGEKDYPMKIAQLSPYLTP
                     SCQDFLNKDAELRSQKGELLDRVRVVYEIPKRGYKPESVIIESDDSWEVSLDLVVDEY
                     YHTEPVKRALARYPLHIVRWEGDPERNAFGLALDCYKGVPQRLEAAVVPEPEKKGMF"
     gene            complement(12276..12650)
                     /locus_tag="OQP62_000159"
     CDS             complement(12276..12650)
                     /locus_tag="OQP62_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000848326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03750 family conjugal transfer protein"
                     /protein_id="HCS1719812.1"
                     /translation="MKTIEFLPDRLNAETVVFRGFTTPELGYAALIGAVSGLILSLIM
                     MLVTGIGWPIIPTCTLITPLIFIFIGGRFLVRFKRNKPNFYLYLRIQKILSHIGIGSK
                     VLVRHDRRWSLRRSKPVRKGGI"
     gene            complement(12660..13022)
                     /locus_tag="OQP62_000160"
     CDS             complement(12660..13022)
                     /locus_tag="OQP62_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000949576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03745 family integrating conjugative element
                     membrane protein"
                     /protein_id="HCS1719813.1"
                     /translation="MLSKSKHGLRVPLPCLLILLLLVASFSSHAGLPTVNIPGGGGGG
                     DMMQTIKLLFSGFLVLMGLIICAVGFYMVSGAILATFSEIRSGKAEWGKFVAIVVVGI
                     AILVVIVWLCTEAAKILN"
     gene            complement(13052..13291)
                     /locus_tag="OQP62_000161"
     CDS             complement(13052..13291)
                     /locus_tag="OQP62_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001251281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03758 family integrating conjugative element
                     protein"
                     /protein_id="HCS1719814.1"
                     /translation="MAMNSEQANAFKAGSGIDPTVLNKFVLGFVLSVLFLWFAWSVLV
                     VFRGWRAGKVTEQNALHFFISTAILVVFSVWMFAS"
     gene            complement(13291..13545)
                     /locus_tag="OQP62_000162"
     CDS             complement(13291..13545)
                     /locus_tag="OQP62_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1719815.1"
                     /translation="MVSAAEKDELALALRQLDQVQSALERAKIVAVQDNSDGRFFFDY
                     ERATRDLKTMKQGIETYLEPSRAQPRDKGSLVGQYRKEQP"
     gene            complement(13782..14540)
                     /locus_tag="OQP62_000163"
     CDS             complement(13782..14540)
                     /locus_tag="OQP62_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03747 family integrating conjugative element
                     membrane protein"
                     /protein_id="HCS1719816.1"
                     /translation="MSTEKNSSQSSPPPRKPPGLLTLVLWIWPVRLLAFLLVSWMAGV
                     FIEWAGMFFFWSDQGALHSQSVMNKELGYLSADFTQSLIFSSPSVTTMGWISSAYQWA
                     FVDSGLLTWIQKEQRETLSSSDSVVFFLGQVQAWLLSVLSDYLLALVYVTVVFAVRVL
                     ILVLSIPLFVLVIIVAVIDGLCRRDLRRYGAGYESSFLYHHAKRFVKPAVYLPCLLYL
                     SWPASIYPNLLLLPGALLLGLAVTVVTSTFKKYL"
     gene            complement(14537..16627)
                     /gene="traD"
                     /locus_tag="OQP62_000164"
     CDS             complement(14537..16627)
                     /gene="traD"
                     /locus_tag="OQP62_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000071290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system coupling
                     protein TraD"
                     /protein_id="HCS1719817.1"
                     /translation="MSNRYVMEALLRPAVELYSAAAGGAATFVLVVAPWSMALAPQVS
                     YVTAAGFAIFTTIRTRQGLRILRYRRNIRRLPRYQMSSESIPVSRHFLFLGKGFMWEQ
                     KHTQRLLETKRPEVAPFLKPSVFYSLARQFERRYEYTFPGLCSLTRRDSFFNPVRPLP
                     PVGGNSAIHGVEMEEDNVLMSLTERVGHLLVLGTTRVGKTRLAELLITQDIRRGNVTI
                     VFDPKGDADLLKRMWAETRRAGRSDEFYIFHLGWPDISARYNAVGRFGRVSEVASRVA
                     GQLGGEGNNAAFKEFAWRFVNIIARALVVLGLRPDYSLILRYVTNIAELYETYAEKLL
                     TQQAPELWLMVQNQMGILTEDDLPRTMQGQVNAIRVMAIEVALSSEQGKKIYDPVLDG
                     LRSAVRYDRTYFDKIVASLLPLLEKLTTGKTAALLSPDYSDMNDPRPLIDWQEIIRKG
                     GVVYVGLDALSDSEVASAVGNSMFADLVSTAGYIYKFGLSDDMPEGSSQRLPISLHCD
                     EFNELMGEEFIPMINKGGGAGIEVTAYTQTWSDIEAKIGNAAKAAQVTGNFNNMIMLR
                     VREKTTAELLTTQLPEVEIYTKTLVSGVTDISNPDQGSDFTSNVQDRVSSTRVPLLSP
                     AEVMNLPKGQAFALLEGGRLWKIRMPLPASVDDEMMPVNLQSIVTTMRKHYRTGDTWW
                     SGSVLPGDNLVDAL"
     gene            complement(16647..17216)
                     /locus_tag="OQP62_000165"
     CDS             complement(16647..17216)
                     /locus_tag="OQP62_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000626967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HCS1719818.1"
                     /translation="MITAILLLLFCLLIPAIWRKKMPSARDRRHRRYRQNAERVLCRL
                     TALDSDGARLKYLRKINPYVFEELLLLAFERQGLLVVRNQTYSSDGGLDGQVFIDGKR
                     WLIQAKRYRRTISPQHIREFGELITREQCCGFFIHTGRTGSKSVNYLQCWRTIQLISG
                     QRLLDLLAGRQCWYHRPVTKSVAGQPVVT"
     gene            complement(17226..17726)
                     /locus_tag="OQP62_000166"
     CDS             complement(17226..17726)
                     /locus_tag="OQP62_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000253629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HCS1719819.1"
                     /translation="MVSILLTTSSMAALNVIADLGGEPTAPLFDAINNKNNEFTPPRS
                     LNATGASVTAAPADVSDMLPVTTPEMRAGKVEARELNLNGMTPVFLVGDDSLSREWLT
                     MRRDELKRLHATGLVVNVSDKDALSELQQIIPDVILLPASASEIARRLHLNHYPVLIT
                     ATGLAQ"
     gene            complement(17762..18448)
                     /locus_tag="OQP62_000167"
     CDS             complement(17762..18448)
                     /locus_tag="OQP62_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000013624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HCS1719820.1"
                     /translation="MANRSILTAARYSVPVLILLIGGVGSAAAVEKGRGLQTIPPGYH
                     LVATEVGVPAEALYSVSLAETSRKLPHGERPWPWTLNVAGKGYRYNSRQEAYDAMLSF
                     MRRYPLKRIDVGIAQVNLGWNGTYFSSYYEALDPYTNLRVAARILKSCYDNNPGSWIQ
                     AAGCYHHPAGGKPARIYKSIVKRKLATLDLNAPVTYSELQIAQISPSQRHFSHYNREL
                     QWVEPRESRQ"
     gene            complement(18427..19167)
                     /locus_tag="OQP62_000168"
     CDS             complement(18427..19167)
                     /locus_tag="OQP62_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001768408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03759 family integrating conjugative element
                     protein"
                     /protein_id="HCS1719821.1"
                     /translation="MKPMKSTLNCLRQWTASVMLAVIVSLPALASVSTGRSVSAPQQQ
                     NTTTEGRTQTSGTAWGLSEKEWQQYQQVLKGPRAFQSPGIDPLMALGLEAGSASERRR
                     FAEMWVKEEYARGEKELAFQREVDAAWKRLYPNTLSVNMGNASGIAHDTQGRLALFVK
                     RNCVPCDARVSAVLADNRPVDIYLVDSGGSDDTIRQWALAHHIPVDKVRSRQITLNHD
                     NGNWLKYGQGYMPVMLQQGVSGWQIAAF"
     gene            complement(19186..20100)
                     /locus_tag="OQP62_000169"
     CDS             complement(19186..20100)
                     /locus_tag="OQP62_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000214158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1719822.1"
                     /translation="MTTTTASSVDIPSDNDLPLSAHLTEPAEPAIDTSDITVTPDTSA
                     QSAAYRLGGKRSRLWHPSSDRRSLIFKVSSVLVYCLLLGAVLFLWLTVRQQQIQLTTL
                     DAAFRSGQLQTLPDRMQAIEDRQQQFVPKLQGEKWQLRLSEQELRLTAFEQQLSSLVT
                     EVKETQAATARAVAREDETGMKLDAVHKALTEQTSRIDTLASWKDTWSKRTVATATKA
                     TPSPGGGQSAAKKSSKPRVIKPPFTLVSIERRGGQAYAVILPAGNSGWTQLRMVSPGE
                     SLSGWVLVNISGNQAEFQVNGQVQRLTL"
     gene            complement(20057..20419)
                     /locus_tag="OQP62_000170"
     CDS             complement(20057..20419)
                     /locus_tag="OQP62_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001149494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1719823.1"
                     /translation="MQAWLNELAGAYRRVEVMTYREIITALPALPADGEWWRRSLRGV
                     GRQRAPSTLYLHIAHIFKRLPVCVPDANLDPLFSLLSFDLSVVSAELFLHSHGENRFP
                     EDLYHDDNDGIFCRYSVR"
     gene            complement(20607..21482)
                     /locus_tag="OQP62_000171"
     CDS             complement(20607..21482)
                     /locus_tag="OQP62_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000994659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1719824.1"
                     /translation="MNATYNALIALMRSGEIPLETGASVSAPSAQFSVRIRPETRVFL
                     DRCAEHLGISRAAMFGMCIDGIVAEARESIADRTSTLYERFCLLLDAHGLNVIEQAQL
                     LASWGIRASVLASQDRTLDLLNKPLLQQLSTWFDVDVNWLLGNSSYPVDMADGQRDWA
                     VQTPSLLCRLQSIQSVDPVELIFFWQQGRKPQSVGLCLRYRPLISGEPIGLLRVYQAL
                     DWQDEQVQQAYNQLRRITSITLGGYTKDKVEKYPPIRLRYFTFSARQMQALDNGAVIP
                     AMIFDKPKGEFPSIS"
     gene            complement(21694..22161)
                     /locus_tag="OQP62_000172"
     CDS             complement(21694..22161)
                     /locus_tag="OQP62_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000455463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1719825.1"
                     /translation="MEYALFVMFCLALYCPCFTLIALFTPWKGFAVFSVTYRRRQYWA
                     VHLALLDRVGAMNRRQARRYHQAFVQALETALVARPVRPVFFRSHLMRPAQVALTCQV
                     LSHRTGYRCRIAPITLPRWERVAIFAQMLLQEWRLIQLPSEEGIMVVIHRLAE"
     gene            complement(22258..23409)
                     /locus_tag="OQP62_000173"
     CDS             complement(22258..23409)
                     /locus_tag="OQP62_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000089603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS1719826.1"
                     /translation="MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHP
                     LAEKMMDEITTVDIASYRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGT
                     CRTNPVEMVRKPKISGGRDRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEI
                     LSLRWEHIDLQHGVAHLPMTKNGSSRDVPLSRKARHLLQGMTVALSGNVFHYSSSGFK
                     SAWRVALQRLNIVDLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLR
                     AYQLVSKLDARRRQTQKIAPYFVPYPACIESVNEGSDGCCGFRVHLPDFDNLSVSAAS
                     RESALEAAGVLLLRTLAKAAQRGERVPRPGDLPEGKHERVMIHPLLSAA"
     gene            complement(23757..25064)
                     /gene="pilV"
                     /locus_tag="OQP62_000174"
     CDS             complement(23757..25064)
                     /gene="pilV"
                     /locus_tag="OQP62_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000744276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shufflon system plasmid conjugative transfer
                     pilus tip adhesin PilV"
                     /protein_id="HCS1719827.1"
                     /translation="MKKQKHDGGFVAMSVGAGLLIVLVMASLAARYMGDYLKSREWQV
                     VAMQTNRFTQAVSSYVGKFYPTVLASATTTTPAVVTTQMLKNTGLLPASFSETNSYGQ
                     QYQAMIVRNQQNQELLQGMVVSRGGHAMPFTALSQISKDITAGFGGYVEDGQTAVGAM
                     RSWRIPLSSYGTSTGRGHLAVMLSTDDLSGAREDGDRLYRFQVNGRPDLNKMHTAIDM
                     GGNNLNSVGTVTASNVAGQNGNFGVSLVSNGPITAGGDIRSTGGWIVTRSGKGWMDET
                     HGGGLYMSDNDWLRILNNKGFYTGGEIRGGKIRSDGDVSAGGILTLDKINVASTACPV
                     NGAISRDTAGATLSCQSGIWSSYRLNFNIQTFNVGKNVRNQYIGVHAYCAWTYLNGSP
                     LGGFQEIHSNGSNGWYISNYRWGNYESGGTISVTCLNLPGAGL"
     gene            complement(25061..25723)
                     /locus_tag="OQP62_000175"
     CDS             complement(25061..25723)
                     /locus_tag="OQP62_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000218700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HCS1719828.1"
                     /translation="MTVSLIGTIFPPVYAIPAFIGCAIFGAVLLRPVRLYLAAAEVDI
                     SRHCAVVVGIWLFAVTGLLILMAPQVWMTRIGMLFMCSFLLQLGVMDATSGWLPRPFT
                     AACLCSGLLFCLAFHREPELRFMETAAMAVVMGSICHGVNRRRPQLGVGDVWLVCALV
                     GWMGVTDALQAAFFGLSGFMLWQWIVHRDFLRCGVLGPWLCAGCIPVIVDRLYQPEWI
                     LR"
     gene            complement(25720..26196)
                     /locus_tag="OQP62_000176"
     CDS             complement(25720..26196)
                     /locus_tag="OQP62_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000334696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HCS1719829.1"
                     /translation="MCGYFSRLALFMTLCSVPLWVQAFCFDAAAAKYHVSPLLIKSMA
                     IGESNLDPHATNDNRDKKTGKIKSTDYGLMMVNSTHIPRLVSMGVIRDKNDLLNKPCL
                     NVQIGTWILAKHFQVCGVSWNCLGSYNAGFRPDRHETRERYANRIWKIYQRQTGAQ"
     gene            complement(26206..26799)
                     /locus_tag="OQP62_000177"
     CDS             complement(26206..26799)
                     /locus_tag="OQP62_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000665947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilX"
                     /protein_id="HCS1719830.1"
                     /translation="MNEVSTLNPCNRPDRGMSADAGATALFILVIIGVIAAAVWSMWG
                     KKDAGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGDPASG
                     SATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGTSGIKI
                     NGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG"
     gene            complement(26841..27926)
                     /locus_tag="OQP62_000178"
     CDS             complement(26841..27926)
                     /locus_tag="OQP62_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000074784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HCS1719831.1"
                     /translation="MSPLYRLRRALARRFFTSGYRLRFYRMLSLQMRNGVKLLEALEQ
                     ISNMYTDFGQRTHGFGFLVDDCRAALTDNSGDNSLEHALANWVPAEEAALISAGMFSG
                     RLPEALAEAEILIDCRRRIRQAIMRMAVYPLGCIAMLGGTLGVIQTQLIPTLAGMSDP
                     QTWTGVLGSLNGLLIFFTEHGVVMGAGLALLVAWTRWSLSNWIRPDRLRRLADRHVPW
                     AVYSDIQGAIFLINMGALLCAGVRTLTALQVIHRFASPWLVVRLNAVMEEVEEGASFG
                     MALRECGYAFPSKEAVNYLSMVSGDGAAQMIARFGQEWLEETVKRVNRRGIAVMLFSM
                     VMLFALIGVVVVAVIEATSMTESMGQY"
     gene            complement(27923..29638)
                     /gene="tadA"
                     /locus_tag="OQP62_000179"
     CDS             complement(27923..29638)
                     /gene="tadA"
                     /locus_tag="OQP62_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015606324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly complex ATPase component
                     TadA"
                     /protein_id="HCS1719832.1"
                     /translation="MSEHNDAVLLYHNPDTTILELLVDSQRRTDVAVQQKVMSLMEEN
                     PGVTMRLVTRSELLRYSEMARQQSEKGEKGLRLEDIKKEVSSRQGDVLNYFMVAKDIG
                     ASDIHGTTRPGLTRIEMRVHGELETVSELAEEDGKAQAATIILSMCDVTEPQFYAGRK
                     QDGRVAAKFLRKVGLFGARYSHTPTADGLHFVMRVIPDDGDVVPTLEKLGFLPKQIRL
                     IKRTLRLPEGMIILSGPTGAGKSTTLRACSDLYLKRTRYKKRLLTVEDPPEGRIVGAI
                     QTPIICDKADEAEVRLAWQRVLTSALRLDPDAILPGELRDLISILAGIFAAQTGHLVL
                     STLHSNSAFSIPERMITMGANAGLVADAQLLVGLISQRLVQVLCPECRIPWSVKKEHL
                     TTEEREYLEKYCSVEGVCQPENLHFRNEEGCPTCRKAVIIGGKQVATVGKGVAGRSVV
                     AEVVRTDSTLFRLLLQQGKEAAKAYWIREMGGITRRIHLLHKLNDGLVDPLDADLIIP
                     LDEDEVMQVVSDQVASSSDIDTSLIERLAMVIAASVREGMKQGVEEAIKEGVAAGMAA
                     LKEVA"
     gene            complement(29648..30235)
                     /gene="pilP"
                     /locus_tag="OQP62_000180"
     CDS             complement(29648..30235)
                     /gene="pilP"
                     /locus_tag="OQP62_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000928959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis protein PilP"
                     /protein_id="HCS1719833.1"
                     /translation="MLMPKNSVFISGVLLMAFSAGAFSQPTLAVPPSAEVISAMPASE
                     PATEAAASISSADLSDTVPIFPGNSVTAGQLEALQGKNLLLEAKVQAARLLKELTSAQ
                     TPGDVGNVPTTSPFVMGMPAEMNATPVHTPPATGRITVLEVSGRGNALQATLSFPDGR
                     QSLVQTGSVIPGTSLKVKAITLSSVTLSDGQQLTF"
     gene            complement(30216..31502)
                     /gene="pilO2"
                     /locus_tag="OQP62_000181"
     CDS             complement(30216..31502)
                     /gene="pilO2"
                     /locus_tag="OQP62_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000763621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 4b pilus protein PilO2"
                     /protein_id="HCS1719834.1"
                     /translation="MADIPLSGKPRTQVLRWQRQNWVAGLRWEEKQKSVRRAPVQRRG
                     VLNVVLTVKQGKSRLTALGQIEAGWRHQKLYSLAALFSQQCTPNGYGVYQLDDGRQVF
                     LATVKGMPSPMADVIGTPDQIIRARELFLSFNPAPEDGWTIPSSPEFPLSWNTLVGQV
                     SSAQLRFARVAGVSNPLRPYGAGVLSVAALLGGAVWWSRLPEPPVAPVVQELPAPVQD
                     VFKKTPEPVYLPHPWADMPVARHFLNRCQRWRAAVPVSLDRWRLERIRCSAEGLETVY
                     QRQPGGTAAGFAERVKQVFKRTPVFNLVSGGNEGVVFIPWAKFTLQDETAPDAGTQLM
                     QAVSWFQSRQVSFSLSEVKTPPAMPGDGAGNDAPQPIQDWHEYTFSITDKHMPEWILQ
                     GLDMQGVRLSSVGYTLSPQGQFTYQIEGHLYAYAKK"
     gene            complement(31504..32800)
                     /locus_tag="OQP62_000182"
                     /pseudo
     CDS             complement(31504..32800)
                     /locus_tag="OQP62_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001324592.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PilN family type IVB pilus formation outer
                     membrane protein"
     gene            complement(33214..33633)
                     /gene="pilM"
                     /locus_tag="OQP62_000183"
     CDS             complement(33214..33633)
                     /gene="pilM"
                     /locus_tag="OQP62_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000539682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis protein PilM"
                     /protein_id="HCS1719835.1"
                     /translation="MGWFIVALGTVFLLVVGHVQTTQRSEVVKAQQSGSSYLLARQML
                     LLAAGINDWRYRHTLTDGTVALSELALPVAPDSRIRHVIVANRLWVWMPEVPGLVDAL
                     REQSGGSALTGTVTQGQLVWLSGIGNGPFSARVVPDD"
     gene            complement(33636..34880)
                     /locus_tag="OQP62_000184"
     CDS             complement(33636..34880)
                     /locus_tag="OQP62_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001095932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TcpQ domain-containing protein"
                     /protein_id="HCS1719836.1"
                     /translation="MNTQALFCLSLPLVIAGCAQQTSTQTARDSAFAQSQQPSVFSDI
                     YQRSPEVTRSGRYTLVSIKSADAQREPLNQLIDITMPGQLVNSVGDGFRYLLFQSGYS
                     LCGHYGADFSELLNRPLPAVQRKIGPMRLSEALQVVAGPAWRMSVDEVNREVCFVLRD
                     AYRVQAKTKALTSVTPAVTGAARTSSPETTRNPYTGVLPGNKAEPVIAGQHLAAKKGT
                     ELKPVSQSLPVPALRPGGTPVTSGVSSAPPVKQVSSPAPRNPFTGKNLTGTTLSASHS
                     PAPVGEKAQAKTPSPSTVKAVNPATATVLATTTKPLTGTPVAAVASGPEWKAVVGSTL
                     KESLTDWAGRADCPGGGHWVVIWQTPTDYRIDAPLVFKGNFETALVQVFDLYKKADKP
                     LFAEASRLQCLVSVADKPADRS"
     gene            complement(35045..35995)
                     /locus_tag="OQP62_000185"
                     /pseudo
     CDS             complement(35045..35995)
                     /locus_tag="OQP62_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000368221.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
     gene            complement(36061..36597)
                     /locus_tag="OQP62_000186"
     CDS             complement(36061..36597)
                     /locus_tag="OQP62_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000157068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HCS1719837.1"
                     /translation="MASKGVNKVILVGNLGQDPEVRYMPNGGAVVNLSLATSDTWTDK
                     QTGDKKERTEWHRVVLYGKLAEIASEYLRKGSQVYIEGALRTRKWTDQSGVEKYTTEV
                     VVSQSGTMQMLGGRNSAGSGQQQGGWGQPQQPAAPSHSGMPPQQHPANEPPMDFDDDI
                     PFAPFGHSVARHALYVLS"
     gene            complement(36610..36828)
                     /locus_tag="OQP62_000187"
     CDS             complement(36610..36828)
                     /locus_tag="OQP62_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000958195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1719838.1"
                     /translation="MLTSPSSSTGLLAAKFAGLSLPLQVLRSGAGYYIGTQNEEGPVS
                     RESVEYFSTQSQAEHALKQGTWSQREQA"
     gene            complement(36909..37358)
                     /locus_tag="OQP62_000188"
     CDS             complement(36909..37358)
                     /locus_tag="OQP62_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000032519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3577 domain-containing protein"
                     /protein_id="HCS1719839.1"
                     /translation="MSKETNYFNLNINGLGYITNVRQVVNGNSKFTCCTLNALSGPTD
                     NADYTRFDVTVAGKDATSLINRCQKSCDEDKKVMIGFVLSGIKSDIFTLAKGDHAGEN
                     RVSLKTRLIRVDWIKIDGAIVYKAEKPDSTPPAQSQPAQKQYAEDSF"
     gene            complement(38026..40020)
                     /gene="topB"
                     /locus_tag="OQP62_000189"
     CDS             complement(38026..40020)
                     /gene="topB"
                     /locus_tag="OQP62_000189"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001241569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HCS1719840.1"
                     /translation="MRLVLCEKPSQGRDIAKFLGATQRGEGFLNGPGVTVTWARGHLL
                     ETAEPEVYGEQYGKPWRTDVLPLLPQQWKLVVKADAKAQFAVINRLLKQVDEVVIATD
                     ADREGEVIARELLDYCKFQGRVFRLWMSALDDASIRSALADLWPSSRTESLYYAGVGR
                     SRADWLIGMNLTRLFTLLGREAGIGNVLSVGRVQTPTLAIVVKRDREIDNFVSKPYFE
                     VIATMAVNGVLFPSKWVPAAQYCDEEKRCIQSGVAAQVVQLCRQTPTAAIINCQIERK
                     KQSAPLAFSLSTLQQACSRHWGMPAQTVLDIAQKLYETHKLTTYPRTDCGYLPLSMRE
                     EIPQVLSAVVGTDPALQPVVASLDTQFVSRIWNDKKITAHHGIIPTKHTGDLSKLSDA
                     ERNVYQLVRLHYLAQFLPQMEIDVTEATFNIGGQLFRTRGNVLVKPGWKSLFGKMSED
                     DEDNTGETTLPAMQAGQVCQVQGAEQKVLQTKPPAPYNDGTLIAAMTNAAAFVTDAAL
                     KKVLKENAGIGTEATRAGIIDTLLKRGFLVREKKTLKSTPLGRNLVDVLPGTLTNPGL
                     TALWEQMLDEVAAGRVSLDDFMAKQSQWVSQLVAQGRSQPLTMQAPPSPPCPVCGGKT
                     LQRNGKSGLFWGCLKYPECKGIVNNGNKGPRGRRRKPSPA"
     gene            complement(40131..40907)
                     /locus_tag="OQP62_000190"
     CDS             complement(40131..40907)
                     /locus_tag="OQP62_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001290445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03761 family integrating conjugative element
                     protein"
                     /protein_id="HCS1719841.1"
                     /translation="MSEKEQVSVSRKAGALRSALNIALNTDYAINLWQGRPPEEEGEK
                     EGKKKERRQSLIFSMPAFIQKAGRINADSFNDNPYADQKMLELETLLQSASVKMNEEL
                     VALKKSMSMLPPQATISEVNCASPLNIGVFSRTPLGYRCVWLLVGFDQLAMQAFQAAH
                     YGFISRQELHRSLRRGGHLIRQIYGAAQKYRFFQVNRRDFALQNAQYHEAIRNAGEID
                     EAVLLGQKRSSFSPPVSKESIELLLAANAKADKADIVQLL"
     gene            complement(41496..42806)
                     /locus_tag="OQP62_000191"
     CDS             complement(41496..42806)
                     /locus_tag="OQP62_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001194352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1719842.1"
                     /translation="MQTPAQVMEEPGSSVHRLPADDIIDYTLSKMQARLDGTPGSSGQ
                     ERNGLLFTGNIHDAYPRALILDMRLSPLDKMCWIMIRQYALQNDGAIFPSYDELQKLL
                     SSPGSGQASRDTVSRALTMLRLTGWLSLCKRVRDTGGRVRGNIYAQHDEPVSAKDAEM
                     FDPGWLDMVGKACQHKYREVSDTAFHVLNGILDDPMMRHRHSRMTEIAERLTRPSKVG
                     DVARTHQNPGTGLSLNSIKNEHKSLSPVNRPSSERGEKSPSPDSRLSLKSDSYDRVRQ
                     PDCNNVRSFTQSVIKKTYVSPQSGKNAVAGIPEGFVWPDGLQSILPESEQPMLAQQLN
                     QLAQKSPVQAEQIALSVVNGWHQKRISNPVGYLLTTLRQARAGLYRLEPAVTQPVKSR
                     SVVPAEPSAAGKIPTCSAEADVPAGQEVVKAMVEQIRQRMNSSQ"
     gene            complement(42836..43084)
                     /locus_tag="OQP62_000192"
     CDS             complement(42836..43084)
                     /locus_tag="OQP62_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000377625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1719843.1"
                     /translation="MDSLAPSFQFYRTDPRNVSKAVTSKARTLLSLYQQGKRVYSQIG
                     QTGYLKIDLGLRWRLLSKDAGKSWLFMSHQTYNRELKR"
     gene            complement(43084..43641)
                     /locus_tag="OQP62_000193"
     CDS             complement(43084..43641)
                     /locus_tag="OQP62_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000144323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2857 domain-containing protein"
                     /protein_id="HCS1719844.1"
                     /translation="MTFSLAQGANSLLFNLVMELRGGNIRRCEALGLKPEEMRLLRSL
                     TMEELHYLSGSPVSVLNVAIHHENLKRMLDQANREQKRSERIDRAIALGASIEMMGIF
                     FGLNASDVSSKRRLEGIQTRQGRCQSPDEECEAKIWRLWHEANISDIESLNSLETMML
                     IAEEADVSLTVIWGLIKNWCTGEVA"
     gene            complement(43726..44448)
                     /locus_tag="OQP62_000194"
     CDS             complement(43726..44448)
                     /locus_tag="OQP62_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001275616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2786 domain-containing protein"
                     /protein_id="HCS1719845.1"
                     /translation="MSANEKVLSRIKKLMVLAEKTGNPYEASVALRQAQALMMKYDVT
                     PASVVPGEITSETCRNIPSNALSVPGWLNALVTVVCMTAGCRSYYGWYQNSDHKKRRS
                     VTFYGLGERPAVAGYLFGVVSRQLKRDAEHYLHTACAHPLLKLSTIRRRMDEYRLYWV
                     AGVWTVLESFEPETSEKVLLDRWLTQQQRNLTPAKVRQPEGCRNAKKVRQAAWTAGRQ
                     AEIYPAMDYRSEEHSLQEVSNG"
     gene            complement(44435..44695)
                     /locus_tag="OQP62_000195"
     CDS             complement(44435..44695)
                     /locus_tag="OQP62_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000838568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1719846.1"
                     /translation="MKSLKKPRSHYQWVGATVVTTQELSSGLAVIPVGSRGVVNAAKR
                     GLSVIFDACPCCGVQLRLTRIRPEMLDIVAYPEIEEVTRVGE"
     gene            complement(44692..44919)
                     /locus_tag="OQP62_000196"
     CDS             complement(44692..44919)
                     /locus_tag="OQP62_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000020911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA C4-type zinc finger protein"
                     /protein_id="HCS1719847.1"
                     /translation="MSIDVDDSMAQNESQVNIDNRFAEIRAALRIKGHVSRRHCRDCG
                     DEIPDSRRESIPGVSLCMYCQEWRESGDKKQ"
     gene            complement(44909..46708)
                     /locus_tag="OQP62_000197"
     CDS             complement(44909..46708)
                     /locus_tag="OQP62_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB family protein"
                     /protein_id="HCS1719848.1"
                     /translation="MAKAPLLNLNNALLQGAKESSAATTAAVAIMPTSEMPMVLTLDE
                     VAPNPDNPRTTRNPKYDEIKESIRARGLDTVPKVTKNPDIPGSPYIFSDGGNTRYAIL
                     RELFAETQDERFYRFHALFKPWPGRLECLVGHLAENDVRGDLTFIDKALGIKKARAIH
                     EETLGRTVTLRELADLLGQQGYPIHNSMISRMEHTVEYLYPFMPELLVSGLGKPQIVN
                     LLNLRADALKIWQQYSVMTETDSDFNEIFGHVCTQFDDPEVYSFEMFRDEFIGMLVNV
                     LPHPSLNYDRWLLELDPKARNQRKLFGEPEPVASHLVDADRQTWQSTASLPGTANDEN
                     QQGGSSLKPKLNNAPVLPKQPDPDNDNGDNDDVTGEWFGSCGSPRLPKAEVQNDFLGG
                     PSVLTGDVIPDEYHFIPDAGNIAVSASAFAGAQVGLTADTPSDAVSIASEMPGLSLLP
                     TEPALSSVEFANVGLEPVTDIWVIPALQDDIEHLQDMAYRLAYELAEAMGCEVHVSED
                     KNASAAGFSVSEHGGEFALFLAGLSGHVPNKQFNMFMFCLNFFGSQSAGDTPVFDDVH
                     VVKSLRLIRVIRRLRELQRNMAAEQNDGRRHEH"
     gene            complement(46701..48065)
                     /gene="dnaB"
                     /locus_tag="OQP62_000198"
     CDS             complement(46701..48065)
                     /gene="dnaB"
                     /locus_tag="OQP62_000198"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000018526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HCS1719849.1"
                     /translation="MSHKSVSAVSMLFNVGAETGVLGGLMLDNDRWDEIAPLLNSGDF
                     YYGQHQIIFREIERLVSAGLPIDLITLSESMERKDLLERCGGVAYLAELSKNTPSAAN
                     IVAYAEIVREYSRKRRLVKLGHELHQLASVGDADIPGLIEKAEKQLFSLAQQACDPDI
                     CLSVTTQVADTVSWLESVSGGSGVTGTATGFAELDEKTCGWQDGDLILLGARPSMGKT
                     AEALKHAVAALEGSPGKTVQFYSIEMPTQQLIMRLLSMLARVPFDNLRKGLLSEGQWS
                     LLADAVAKLTSWEGRLLIDDTSYQTPSTLRISARRNVRKYGQPSLILVDYLQLMSCPG
                     RENRTQEIQEISRSLKSLAKEIRCPVAALSQLNRSVEQRQDKRPMVSDLRDSGSLEQD
                     ADVIMFLYRDEVYNEHSPDRGIAEIILGKQRQGPLGTVKVRFEGEYMRFSEYHLGYGE
                     VSYG"
     gene            complement(48062..49012)
                     /locus_tag="OQP62_000199"
     CDS             complement(48062..49012)
                     /locus_tag="OQP62_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000068773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HCS1719850.1"
                     /translation="MAQQVSPHSLLLPDEQQFPVVLPVVSTKGGEGKSTKAGNIAGYT
                     ADAGLKTLLIDGDYNQPTASSIFKLHYEAPCGLYELLMQTADLNKPDSIISRTVIPNL
                     DVIISNDPDDRLSNDMLHAADGRMRLRNVLQHPLFRQYDVIIVDSKGAGGVMVELVVL
                     AATQSVMGVIKPILPDVREFLRGTVRLLSKLLVLEPYGIHIPDIRILANCVEPTVLDR
                     NTLNELKAIVDKGQYPQSDRIAISMLNTEIEQLEVYKRGHACGQPVHRLEYKTDRVSL
                     PAAESMHHLVCELFPQWKDKFDAVLVNRPQPGFGQGADEV"
     gene            complement(49310..49384)
                     /locus_tag="OQP62_000200"
                     /pseudo
     CDS             complement(49310..49384)
                     /locus_tag="OQP62_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003842122.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            49941..50693
                     /locus_tag="OQP62_000201"
     CDS             49941..50693
                     /locus_tag="OQP62_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-specific acid phosphatase"
                     /protein_id="HCS1719851.1"
                     /translation="MKSRYLLFFLPLIVAKYTSAATMQPFHSPEESVNSQFYLPPPPG
                     NDDPAFRYDKEAYFKGYAIKGSPRWKQAAEDADISVENIARIFSPVVGAKINPKDTPE
                     TWNMLQNLLKMGGYYATASAKKYYMRTRPFVLFNHSTCRPEDENTLRKDGSYPSGHTA
                     YSTLLALVLSQARPERAQELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFARLQT
                     IPAFQKSLAKVREELNDKNNLLSKEERPELNY"
     gene            complement(50934..51425)
                     /locus_tag="OQP62_000202"
     CDS             complement(50934..51425)
                     /locus_tag="OQP62_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1719852.1"
                     /translation="MISTPEPLHAGHILTPFCCGVDSIDNWLKQRAMKNQTTGASRTF
                     VCCGSDSNVLAYYSLASSAVTTNTSPGRFRRNMPDPIPVVVLGRLAVDKSLHGQGVAR
                     ALVRDAGLRVIQVAETIGIRGMLVHALSDEAREFYQWVGFVPSPMDPMMLMVTLGDLV
                     ESV"
     gene            complement(51422..51715)
                     /locus_tag="OQP62_000203"
     CDS             complement(51422..51715)
                     /locus_tag="OQP62_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HCS1719853.1"
                     /translation="MPAANSMAMKRETLNLRIKPAERDLIDRAAKARGKNRTDFVLEA
                     ARAAAEEVLIEQRIIMADPEAYQEFLVRLDQTPSPNAALRKTMQTPAPWEQEK"
BASE COUNT        13161 a        14283 c        11964 g        12636 t
ORIGIN      
        1 aataaacatt cggctttaaa aagaaaaatt taataattta ctaaacaaaa ctaaatctcc
       61 tggttggtgg tgctaatgac tcggtaatct gtaaacaccc cactcaggag ttacaaattt
      121 atgtccattc tttcttcggc caacaattgt taaaccaatc aaaaacccca cattgatcgt
      181 cacaatgaac ttgatgtttt cttcgctagt tgagatgctt aaattatgaa gatacacaca
      241 ttcaggagca cagcaaatga acgcacaagc acgcggtgcc cgggccgcaa ggctttataa
      301 aagggctaag tcaaagctga tttcactcga ccatttctgt gttcaaaaag ccagagagca
      361 taagctgccc gcctggactg gtcatctccc ggtgacaacc ctgacaggga ttctttttgc
      421 tgcagtgatt tttggctcac tgttatttgt gagcttaggc ttatttatat ttgcacttat
      481 tctggttaca tcgtggcctg gaaaaagaac aaactctgcg gactcgtgga gcgataactc
      541 ttggggaagc tcaatgagag atggaagcga gggatttggt ctatacactg gcccagaaaa
      601 tagccatata ccaacaagta ggatagataa tgaggatgac ctatgaaagc actgtaatat
      661 ttacagtgct ttcacgattt cttatttagc tattcccgag ccaattttat caccaacttt
      721 gccaccatgc tgtccagctg gctgcactcc cttatttaag ttagtgtcaa caatgccgcc
      781 aattctaacc ccagcccagg aaagcgcccc catccacact gccggcaaca ccaggaacat
      841 cgtccccata acaaagttca tgatcaggtc atctgcgcta ttctgaaaac cggccacatt
      901 ccatcggcta tggctgtccg aaccatacat gatctccaga agccagctat ccagccagcg
      961 cgccagctcc caccagaacg taagaaaatg catcccaaac gtcacaaaag tgagagtgac
     1021 tactgtctta tattcatacg tcccgaatac cagcaccagg gggattagta catacatggc
     1081 catcaataaa agtgcctgaa ccatcggtaa cgcctggcgc atggcatcaa atgcggggaa
     1141 cgccccaagg gcacccacac tggtccccag cactgaagcc atgcgattta cagcattatc
     1201 taacgtaaaa tcggcattac cgccataacc tgcataagta cgtccattct gtgacacaga
     1261 gagacttgtc ggactgacca gacgtcgaat tagcgcttcc gtgtattcct ctttgctgac
     1321 cattccctta aatgctgccg ccatgcgtgt catcgtggtg gtatttaccg tatccagcac
     1381 acgggatttc aggcctgtct tgttctgaga ccaccactcg ctacacgttg gatacccccc
     1441 ctgcccggta tttgcgtacc cgtcatcgcg gctttgcgac caggggaacg ctgacctggg
     1501 caacttcgaa tgcagctgcg ggtaaaaatc cttcaaaaat attttcgacc ccagccattc
     1561 aatatccctg agtacatcaa tatccgtagt tctccccgca tcctgccgtt tccataacgc
     1621 aaaagcctgt gcataacagt cactggtaaa atcctgcaat tcctgagcca gagcaggatt
     1681 ggtgatctgc gtatgctgaa cgtcaaaacg cacctgccgc aggtctggcc ggcagggtaa
     1741 acttgccaca gccgcctgag tgacgccttt ggaaatcata tgcataaatg cccaccacac
     1801 cggcgcagat gcagtcatac cactcattgt tgaaaccaca ctaccgtagc ctgaatcccc
     1861 gggcttgacc ggtgtccaga aaccacactg tttcgcacgg gttgtatcaa acgtcagcgt
     1921 tgtcagtgac actgtctgag tggggacaca gcaggcgata ataacgataa atgccccgta
     1981 aatagcatgt tccatccgtc gggccgacag gataccttta ttaccctcat catccccttc
     2041 ttcccgtgtt ttgatccaga taccaatgat tttaaagccc agtggtaatg caaaaagtcc
     2101 cgtgcctgtc agaacatccc acaaaccgtt attaacaacc cagcccagaa tcgtcaggat
     2161 gtactcaaga tagctcgatg tcgtcatctt ctacctcaac actgaatatt cgcaaatcgc
     2221 gacgaaacca acagaaacga cagcaatccg cagaagactc tgacgcagag cctgagaaga
     2281 gccatgggag tgataacaac gccatatccc ccaaccagtc acgctgtaaa gcatcagccg
     2341 ccacagaagc cacaacaacc aggtttcctt catccagatc cggaactggg ctatttcaga
     2401 ctgataacga aaccctaaat cagccagtgc aagggacagg cacgtaagca taaccagcat
     2461 gaacacaagc gtcagaataa atctcagaaa tgaagttgtt ttgattaaga tcctcagtgt
     2521 cattggctgt cccctggttt acgcgtttca agctcactca gccgggtatc agcattagtc
     2581 tgcgattctt tttgaggatt ggtgaccgaa cgattttctt cgcgcgcaac cacaaccagc
     2641 gcggtatttt ttgccacttc ccgacgcagt tccatctcca gcttaagaga gttaagctca
     2701 cgatcgagag cttcaatacg gcgatcggct tcagccattg cctgaggctg atcagctgca
     2761 ttgggttcag actggccagt cgttaacatg cgacgcatcg ccagaccggt ttcaatcgtg
     2821 tcggacatgg ccagttcgcc agccagtctc tgaaccaacg caccggcatc aggatcgcgt
     2881 ttcagggcat cgatgacacc acgcgttacc ttaaggctgc cacttttaat tttatccaga
     2941 ttggcctgag tcggagcctc agtaccattt acaagcttta ccagctgttc cagattctct
     3001 ttggttgtat cctcaagcat gggagcaaaa ccggtaccgg caattgtcgt gccctgggca
     3061 ttatcaatcc cgccgcttcc gcattctgtg gcatctttac aggtgcgaat actccgatcg
     3121 cccagaactt ttacgaccgc tgctgcagct tcttcagagt ttttaaattt ctggcatgct
     3181 gaccccttgc aactaccggc ggataccgtg ctgttgctgg taacgctcag gttattcatc
     3241 atgttgtatc ctgctttagc cagatcacgc gttggctgaa tggcaggctg gcctttccct
     3301 ccggctttct tcccgcctac ccaggtagcg ccctccttac ctgaagcttt ggttctggcc
     3361 tcttctgccc gcagcgcatc cccgccactg gcactgaccg cctccttgta ctcttccctc
     3421 acagctgatt ctgtccagct gctcttgtca cccaaagtgt aatcagccag cttgttggcc
     3481 atgctttcac aattcagttt cgatttgtca aaagccagac ctgcctgaag tacaccattg
     3541 gtgatcattt catacaaacc cggatttgct cgctgaagga tcatcgccgg catacttgag
     3601 accgccccgg tcgcaccggt gatcacatcc cccatcaaat ctttgaaacc attcgtgacg
     3661 ccattaagct ggtttccgac agtagtcttt atatcaaagt tgccacacat caaatcactg
     3721 ctcagtccgg catccagccc gatacgtttc attccgtaca tcgtcccggg agtggaaatc
     3781 accgaaccac caccaatgct gtaaaacagc ttgtcactaa ccgcgccatt tactgacttt
     3841 ccatatccat caccactcaa cgtgggggca tccagtaatg cagcacttaa cggtcccgaa
     3901 ctgacgatac ccagcatgag acagacggat aaaatggatt gagatctcat tttcgatact
     3961 ccacttaatt tatgtcggtg ctatagagaa atgtttgccc acggcgttta cagcagctat
     4021 atggctgcca gagtgtccag gcgtaattac cgttttccgc aatttttcct gtatccggga
     4081 atacgctgca tgacatagag agcgttggtg ataactgctg ccatttatga ttttgcgtgc
     4141 cggtattctc tttaacaggt tcgggaggcc agtaaccggc agacgggttt ccggtgaggg
     4201 gcttatagac gtggatctgg ttagttcggg tgataatgtc agctacacgc tgcgcaacga
     4261 ttgccccgga tttgtagtca tcctgctgag taacaaagcc gcttcgggga tagagatttc
     4321 cccatatatt ttgtgccgat gtggagccga tttcgcgtct gccaggaatg agtgcctcag
     4381 gataaaccga ttcaggaaca ccagtacgcc aggcaagcgt atcaagcgtg ctaagaaaat
     4441 agggtaccag tggtgtggcg gcgctgttgc atgagtaacc ggggatttgg ccgccaataa
     4501 tcgatgttga aggatggcca atggcatctg catatttaaa tcgcacatta ctcttacggg
     4561 tacccgggaa tttctgttcc tggtttccgc caccggcagc aagcccggat aacgcccccg
     4621 ttacagcatt ctctacccct ccggccgtct gactcactaa tgacatttcg gtccacggat
     4681 ttccaccaga cgcctgataa gtcgaaacaa cagcttccgg aataaagtga tgcactttta
     4741 tcgaggtttt tactgtacaa ccgaaagggg tacacatcag ccagtagcag ataccgctga
     4801 ttctccagct gatacacgac ggagaaatac tgctggccac aatcgaggca gtgttcaacg
     4861 cagcctgaac ctccatgccg ccggtgataa gcatgactga cagtaacgct cgcttcagac
     4921 gaagagattt cattgattct ctcccctgcg cagcgccact gcccgggata tatcaacagt
     4981 cccgtaaacc acgtcacggt tgtcaaaaac caccgccgga tatttcagta aaccaagctg
     5041 ccatgcttca atcattcccc tgtaatgttc gataagcgct ttttgccgtc tcttccagtc
     5101 aggagaattc agcagagaat gagcctgtct gacagcctgt tcaggatcag aagaaagctc
     5161 tccaaattgt tgctgcagcc agcgttcgct ggcatcgaga taaacaaccc ggatagccgg
     5221 tgttacaccg accggaggat gcccctggtc ggtgtaaaca acgatttgcg cacttgcaga
     5281 aaaggagctg attaatatca gcgaagagag gattcgtttc atgccacgct cctgacgata
     5341 actatccgga tagcgtgcga aaaacgcaga ggtaatgcag taataaactc tgttttgctt
     5401 tttaataatt ccccgcttca gaatatgtgg aagcggaata tgaaacgccg gcttttacgc
     5461 cggcgagtgt acctgtctac ctgataagcc acagcgccag ataaagggca tctgcggcat
     5521 cggcaacatc gatgtaccat cggggattaa cgtaactttc ctccgcaggt aatgctgtct
     5581 ttccgcttac cgtaattaat atatccagct tttttccgcg taaattctca agatggattg
     5641 ccaggcaggc acgatgcccg atacgctgtg gatgacaaac cccacgataa gtattgccaa
     5701 gagctccctg aatatgagaa gtcagacgac tcatatcctc atcatgttcc ttgcggatcc
     5761 acgctttacc ctgcggaggc aaacccagca gcgcatcagg cggaatacga tgcgattcat
     5821 cttcaccgag aattaaccat tgctcatgct ttaacaggct cataatcccc ccattgaaat
     5881 accatcattg agcaaaagag atccttcacg tccagcctcc ccggacaacc actctgatga
     5941 cataacaatg actcctctga tattggtaaa actggtcaca gggcttggcc attgcccgtg
     6001 gctcaggaat tgttttttca ggccgctttt tgtggacaaa aaccccgtgc ctcatccagc
     6061 ctgcgggcca cccggatcgc tgcctcaagc tcactgcact gatactctcg catcagccgc
     6121 tgacgttccg ctttttcctc tttttcagtc atccccaggg cgagatacag actgggaggc
     6181 acaacccgga acagtgcctc aacctgcttt gataaaacga cgccctcggt ataacagttt
     6241 ttgagcttac tggctgatcg caaaataact ttttgctcct cgctgagggt tttgaaacgg
     6301 gcaatctgct ccacctcatc gggaggcata accaggcaca accaccattc agccatgttc
     6361 agcattttct gcgcaatatc aggaaaatcc tcgaggttct gtgtcgccag ccacagccat
     6421 gcccccagtt ttcgccacat tttcacaacc ttggtcatat agggcgacaa caaaggattc
     6481 gtcgtggaaa tatgggcttc atcaaatacg gccacaatat cccgggctgt tccctggtca
     6541 cgttcggcga tattgttaat cgtgttaatt aaagagacca tcgccagcgc catttgtgca
     6601 ccatagcctt cacgtgccag atgacctaaa tcgatcagtg tgacatcagc ctctggccat
     6661 ggtgttcccg gacggttgaa taactctccc tcaaatccct gagtgaacat ggccatggct
     6721 tctgccatct cagcagcacg atcgcgacgg gactgattcc gcataggctc gccatttgca
     6781 ccaatggaat tatcacgtga gatattccac agggcagcct gtaaatcctc agccagcatc
     6841 tgatgtccgt cctgatatgt tttctccgcc gccatcatga tagcttcacg aataagaccg
     6901 cggtcagccc gggtaagacg ttcctcctcc cgcttctcgc caccggtgat catcatccgg
     6961 gctgcaattt ccatttcgcc aagaatgtca cgctcttcac tttcatcttc tgcgctgtcg
     7021 gtattggctg gctccagctc aggtagagct tcctcagaaa ccacgttttt ctttggatct
     7081 actcgcatta aggaatgagc atcagcaaac atcggtaaag aaataccgca gccaggtttg
     7141 atactcagta catttacgct cagtcccagc ccccggaaat actccgccag caaaccaaaa
     7201 ctgttgccgg cttcggcaat aaagaggcgt ggacgatgaa cggccattaa ctgtgataac
     7261 gcactacata aggtggctga tttacccgcc ccggtcggac caaaaagcaa caggtgagca
     7321 ttctgcgttc tgtccagact atttaaggga tcaaaagaca acagttctcc gccacggtta
     7381 aaaaaactaa acccggggga agcaatccag ccagatgctg aacccaggtc aggcgggtat
     7441 accagttttt tttatccagt tgcgggttaa aacacatagg aagcgctcgc aaatagtcat
     7501 tcaggggcgc cacttcgtat tcaggtttcg tgggctggag ccccgcagtc agcaatgtag
     7561 cggtaagttg ctgtattttt ttattcagct cactgacatc aggtgcacgc atcaaaaaag
     7621 ttatcgatgc acgataaagt ttgtgacgca tgcccagcaa actcttcacc tgctccacat
     7681 cactacgggt ccgcctggat tccgtgttct gccctattgc atttttaccc agcgtgtcaa
     7741 acccggcttc cagcgtgtcc tgagcctgcg ccacaatagt gagcgatacc attgtgccct
     7801 caggcaataa atccatcaga gtattaatat tgtcgccacg cttaacctcc cccgtcagat
     7861 gaccgggtcc cggagggcga cgtaatgttt caacaggaac ggcacgatgc gccacattat
     7921 caaaccacca cacaccattt cgggtatcag aacgtggagg gttaaaccac aacgtctcag
     7981 tgaaatcatt gccaagaggc aatgaatcag gtgcatcatc ataataacga gcctcccggt
     8041 aaagcgtatc tttgtctatc cagtcgggct caggattgaa gtgacgtaac aaccatcgat
     8101 gtatctgctc gccattctgt cggacactca gaacgccggc tgcagataag gctgaagtca
     8161 ggcgctcaca aacctggttg agagcggcaa ccggcgaatc atctttgtaa ttcgctggca
     8221 ggtatcgata taccaccatc ctgacggaac gattttgtcc ccgccaggga accccggtga
     8281 caagtgaatc agtgaacaaa ccttccggcc gggtgatatt tcgcagatgc tgttctgttt
     8341 cagccagcca ggccttcgta aatgccgtcc tctgagcatg cggtttgatg taactggcta
     8401 accgattcat ataggcactg aagtcagttt catcctgaca aaaaactgta ctacccatgg
     8461 gttagaatca aactcttcaa ggctgtcctg aagtgcatct tcaaccgaat cccttatttc
     8521 ttccagacgg gcagctgtgc gcccctctga tgccactggc gatatactgt ataccgcacc
     8581 gacagactgg ccatcgtcaa gcagcagaca ttgctcgcga ctcaggtact cggcccaggg
     8641 caaaaaatca ataatggacg gacgggtttc gtataaacgg gattcatcag cgtgactcat
     8701 catgcccggg cgtttcagtg ggtcacggcc atgaacagca aagtcacttt ccggtaactc
     8761 gtcaggctcc cggggagaag atgacttcag cctgtttttg ttaaacaaag aaaaactgac
     8821 catcacagtg cctccgtccg ttcaccagga agcgcatact gggtttgagc ataaaaagga
     8881 aagacagtgc tgtagccagg aacaggcgta tttccattag ccaagtgcgg aaatatgtac
     8941 atcaccatat ccggattagg taaccggggg aaaatctggc tcagctcatt ctcctgagta
     9001 cggctgtagc tttcatcaat acgccctgaa gccagtgttt cctgagacga aagactccgc
     9061 ctgagagtct cccgcccttt gacaacggcg tgagatgtcg gagcattccc ctgccagagc
     9121 tccatcattg aactgtctcc cggaggcaat aattcatctt tgctggatga gcatccacca
     9181 agcgcgacac tgaacatgcc cgctataaaa aataaaacgg gagttatttt cactgtacgt
     9241 gaagtgattt tctgattatc agtcaagacc ataatggcct cctgttccgg gcaagctgaa
     9301 gtcatatcga accttacgac catggtcttc ataatcaacg gccagttgac gagtaatatg
     9361 aatagcgaca tttgcaccag gtgggacata caccgcatca aacgtctgtc cgtaacgttg
     9421 tttaacccag tcggtaactt ctttaaatcc ccctcccagc gtctgcccca gtaccgcctg
     9481 ccccgcattg ccggttaagg ctgatgtcac cccaccattc acattgttct gagtggtata
     9541 ttgattttgt gttaacgcat cacctgcgga gcttcccatc cccagtaacg caaccgttgg
     9601 cagataagtt gaagcattag atttgcgctc accactgata cagggaattc cgttgttatc
     9661 tgatatccag ccaatgctgc ccctgtctcc ggcgttgtca ttattgttgc cctgagtgtt
     9721 tgctacgggt ctgggaagtg ttcttatacg tccatcggaa aaaacaaacg tgatcgaatg
     9781 tatcgttcct ctgacacacg aaagcaccat atcccctgta gcagtcccgg aaacaatagc
     9841 cccctcaaca tcgggcaatt cgataccgtt tgcagttagg ttatccttac cgatcaggac
     9901 tttaaatgga taaggatcgg tgactttgtc attaattggt atacgaccaa ttaatgccgt
     9961 catcgcctta ctgcctacca gggttgagtt ctcaggcaac gtataaacag gccgtgtatc
    10021 ggactctgca ccgtttccgt ccagttcctg cttgttttta acaacgcgat cgtactcagc
    10081 tcgctgacga ctgacggggt tatcatccag aaaagaggtg ggaaaggtga atttatcatt
    10141 atcactctgg ctttgaccct ctgtcttttt agcatcctga ggagatatcc agatcacctc
    10201 cccctgagtt gcagaggatg cattctctgg atccagtcca aggccaaccg ggaaatcggt
    10261 tcctgaagac gaacctgtcg acaccatgtc agtgttttgt ccctgggatt tcagtgttcc
    10321 ggtcaggtca ttgagcttct ccagtaggaa cgttttctgt ttttcaagag cctcgttcgt
    10381 ttcctgtttt gcggcattta cagcatttga tatctggagt cctaccgatg aattctcacc
    10441 cttgagctta ttattttcag aaatgagtgc cttattttgc tcatccagca cagcctggcg
    10501 ggcccggaca tcacgcaacg ctccaataag tgtacgtagc gtgtctgctg acgtatcccc
    10561 ctcaataccc agtgctttca aatcatcctg gctcaactca gtcaatgcat tagtggtttt
    10621 agcgggttca ggttcagtag tatcttttaa accacaggct ttaacgccaa taaaacaaac
    10681 caccacgatc aatactggaa gtaaaacctt catcaggcca ttggctttaa tttgcatgct
    10741 gttccccttt ttttactgcc ggcaatactg caggttcagc aataaaggca ttctcagggc
    10801 gccctctgat cacaagataa agagttgttg tatcttcagg cgtaccagcc gccccaagcc
    10861 aacgatgctg gaaagtcgca ctgacaaacg atcctgataa agtccgggca tcaagtatca
    10921 ctttggagga agaacgattc cggattttca gtgcaacaac attcagttcc tgaatacccc
    10981 atgcccctat tggcgaaaca actacattct cagacggata taaagttgtg agtctcgagg
    11041 gaaggcgtaa atttaccgga tgaattccgg gtacagcttc aacagtgcgt agaggggcat
    11101 acagactttg tgcagcataa cgagtcaaca ccactggcaa tggagcactg tacaccggcg
    11161 tttttctgac agtctgattt ttatcttctg tatccaaaga ggcgactggc aacgaagaac
    11221 ccgtttccat tcctttttcg ctcaccgata acacttctcc cgaataaacc aggcgaacag
    11281 gctcaagcgc cttattgtca tttttggcag caatatccag taatataatc tcgcccgatt
    11341 caacatcctg cagttgaagt cgggtctgtt caaaaggttc gctggcctgt aaataaaccg
    11401 taccaccgct gctttgaacc ctcagtttac ctttgagcat tgccggaaaa cctacacgaa
    11461 cgttgcggtc gacaaagaca attcgctcat ggttaacaga aagtggaata agcagaggga
    11521 tccgttccca tttcatcagc tccacagcct gtgctgatga aaaccataaa aggagaatta
    11581 tcggccacca tttacactta aaattaagga ctttaaacat cgccattaaa acatcccctt
    11641 tttctctggc tcagggacca ctgcagcttc aagtcgttgt gggacgcctt tatagcaatc
    11701 aagcgccaga ccaaaagcat tgcgctccgg atcaccttcc cagcggacaa tatgcagggg
    11761 gtatctggcc agtgcccgtt ttacaggttc tgtgtgatag tattcatcga ctaccaaatc
    11821 cagactgacc tcccaactgt catcgctctc aatgatgaca ctttcaggtt tgtaaccacg
    11881 tttggggatc tcataaacga cgcgaacgcg atcaagcaac tcaccttttt gactccgtag
    11941 ctcagcatcc ttattcaaaa aatcctggca tgatggcgta agataaggac tcaactgggc
    12001 aattttcatc ggatagtctt tttctccgtc cttcggccag gcattaattt gctgaaaaat
    12061 ataaaaggca aagctgtaga ccgtactcgg agggacctcc caccatttac gcgtactccc
    12121 gctgcgtaaa tctggcgggt tatgtattgt caggtcactg ggcgcccgca tccatcctgt
    12181 aataaccaga atcaataaga gaagcagaac tccacacgct aatctcaggg tcaaaatatg
    12241 ctgatcgcga tccttcagag catggcgaaa tcggctcata ttcccccctt gcgtacaggc
    12301 ttactcctgc gtaatgacca gcgtcgatca tgacggacca gaactttgct cccgatacca
    12361 atatggctca gtattttttg aatccggagg tagaggtaaa aattgggttt attacgttta
    12421 aaacgaacca gaaagcgtcc accgataaaa ataaatatca gtggagtgat aagagtacag
    12481 gttggaataa ttggccagcc gatccccgtt acaagcatca ttatcagaga caaaattaag
    12541 cctgacacgg caccaataag tgctgcatag cccagttctg gtgttgtaaa ccctctgaaa
    12601 actaccgttt cggcattcag cctgtccggt aaaaactcga ttgttttcat gaggccacct
    12661 caattcaaaa tcttcgcggc ttcagtacac aaccagacaa tgacaacgag aatggctata
    12721 ccgacaacga caatcgcaac aaatttaccc cattctgctt taccggagcg tatttctgag
    12781 aatgtcgcca gaatagcgcc ggaaaccata taaaatccga cagcacaaat gattagcccc
    12841 atcaggacga gaaacccaga aaacagaagc ttgatcgttt gcatcatgtc acccccaccg
    12901 cccccaccgg gaatattgac cgtaggtaat cctgcatgag aggagaagct cgccaccagt
    12961 aacagcagaa tcaaaagaca gggaagtggt actcttaacc catgtttact ctttgaaagc
    13021 atcatgtttt ccttttaacc aaacaaatta ttcagctggc gaacatccat actgaaaaca
    13081 caaccaaaat ggccgtactg ataaaaaaat ggagagcatt ttgctcagtg acttttcctg
    13141 cccgccatcc acgaaacaca actaataccg accaggcaaa ccacaaaaaa agaacgctca
    13201 gaacaaaacc cagaacaaac ttattaagta ccgtagggtc gatacctgac cctgctttaa
    13261 aagcgtttgc ctgttcagaa ttcatagcca tcagggctgc tccttcctgt attgtccaac
    13321 aagagaacct ttgtctcttg gctgtgcccg ggaaggctcc agataagttt caatcccctg
    13381 cttcatggtt ttcaaatcac gtgttgcccg ctcatagtcg aagaagaaac gcccgtcaga
    13441 attgtcctgt accgctacaa ttttcgcgcg ttcaagcgca gactggacct ggtccagctg
    13501 cctgagagcg agggccagtt catccttttc agctgcactg accatctctg gcagagagaa
    13561 caaactgagg acgagtaaaa acccttaaag gtctggaaga taattgacat ctttgcatta
    13621 ccacctctgt ttcatggagt acgtctgtca caacagagtg gcgaaatcag ggaggagatg
    13681 cagcaggaaa ctctttatgc ttttttgaaa tttatatcct cccggggggc tggtgccagc
    13741 cccccagaga agacaataag tcagcggttg accctggccg gtcacagata ttttttgaat
    13801 gtagatgtca ctacagtaac cgccagtccc agtaacaatg ccccgggcag aagtaacaga
    13861 tttggataaa tcgacgcagg ccatgacaag taaagtaagc aagggagata aacagccggt
    13921 ttaacaaacc gtttggcatg gtgatacaga aaactcgact cataacccgc cccgtaacgt
    13981 ctcaggtcac gacgacacaa cccgtctata acagcgacga tgataaccag aacaaataac
    14041 gggatggata aaacaagaat taataccctg acggcaaaaa cgacggtgac ataaaccagc
    14101 gcaagcagat aatcgcttaa cactgataat aaccaggcct gcacttgtcc cagaaaaaaa
    14161 acaacagagt cagaactgct taatgtctcc ctttgttctt tctgaatcca ggtgagtaat
    14221 ccactgtcca caaatgccca ttggtaagct gacgaaatcc agcccatcgt agttactgat
    14281 ggtgaagaaa aaataaggct ttgagtaaaa tctgctgata aatagccaag ttctttattc
    14341 ataacggact gggaatgcaa agctccctga tctgaccaga aaaaaaacat tcctgcccat
    14401 tcaataaaaa caccagccat ccaggatacc agcagaaaag ccaaaagcct gactggccag
    14461 atccacaaaa caagggtcag caaacctggt ggcttgcgcg gtggtggaga actttgagag
    14521 ctgttttttt ctgtactcat agcgcatcca ccagattatc tccggggagc acactccctg
    14581 accaccaggt gtctcccgtt cggtagtgtt tacgcattgt agtgacaata ctctgcaggt
    14641 ttaccggcat catttcatca tcaacggatg ccggcagcgg catacgaatc ttccataatc
    14701 gccctccttc cagcagtgca aaagcctgcc ctttaggtaa attcattact tctgcaggag
    14761 ataaaagagg aacacgtgta ctgcttactc tgtcctgaac gttggatgtg aaatcactcc
    14821 cctgatccgg attggatata tctgtcacac cggaaaccag tgtttttgta taaatttcaa
    14881 cttcaggtaa ttgcgttgtc agcaactcag ctgtcgtttt ctctctcaca cgaagcataa
    14941 tcatattatt gaaattgcct gtgacctggg cagctttagc tgcattacca attttggcct
    15001 caatatctga ccaggtctgg gtataggctg taacttcaat acctgcccca ccgcctttat
    15061 ttatcatcgg aatgaattct tctcccatta actcattgaa ttcatcacag tgaagactga
    15121 tgggtaaccg ctggctactc ccttcgggca tatcatcaga cagtccgaac ttataaatat
    15181 atccagctgt tgaaaccaga tcggcaaaca tactgttacc taccgcagaa gcaacttcag
    15241 aatctgaaag agcatcaaga ccgacgtaaa caacaccgcc tttccgtata atttcctgcc
    15301 agtctattaa tgggcgcgga tcattcatat cactgtagtc aggagataat agtgccgcag
    15361 ttttgcctgt ggtcagtttt tccagaagag gtaacaatga agcgactatt ttatcgaaat
    15421 atgttcgatc ataacgtaca gcgctacgca acccatccag tacgggatcg tatatttttt
    15481 tgccctgctc actggataat gccacttcaa tggccataac ccgaatagca ttaacctgtc
    15541 cctgcatcgt acgtggtaaa tcatcctcag tcaggatccc catctggttt tgaaccatca
    15601 gccacaactc cggagcctgt tgagtcagta acttctcggc ataggtctca taaagctctg
    15661 caatatttgt tacgtaccgg aggataagcg aataatcagg tcgcaaacca agaacgacaa
    15721 gagcacgagc gatgatattg acaaagcgcc atgcaaactc tttaaacgca gcgttatttc
    15781 cttctccccc aagctgcccg gcaacacgtg aggccacttc agatacgcgt ccaaaacggc
    15841 cgactgcatt ataacgggca ctgatatctg gccagccaag atgaaagata taaaactcgt
    15901 cgctacgccc agctcgcctc gtctcagccc acattcgttt caacagatca gcatcacctt
    15961 tggggtcaaa aacgatagtg acatttcctc tgcgaatatc ctgcgtaatt aacagttctg
    16021 ccagacgggt cttaccaact cgtgtcgttc ctaatacaag aagatgtcca acgcgctcgg
    16081 taagactcat caaaacatta tcttcctcca tctcgacacc atgtatcgcc gaattaccac
    16141 caacaggggg taatgggcgt accggattaa aaaatgaatc tcgtcttgtc aggctacata
    16201 acccagggaa tgtatactca taccgtcgtt caaactgacg agccagggag taaaaaactg
    16261 acggtttcag aaagggagca acttccggcc gtttcgtctc aagcaaacgt tgggtatgct
    16321 tttgctccca cataaagcct ttccccagaa acaaaaaatg tcggcttacc ggtatggatt
    16381 cactggacat ctgataccgg ggtaaccgac ggatattgcg tcgatagcgc aagatgcgca
    16441 aaccctgacg agttctgatt gttgtgaaaa tggcaaaacc ggctgcagtc acataactga
    16501 cctgtggtgc taacgccatc gaccatggtg cgacaaccag aacaaaagtg gcagccccgc
    16561 cagccgcagc tgaatagagt tctactgctg gcctcaataa cgcctccatg acataacggt
    16621 tactcatagc tcctcctttc acactgttat gtaacaaccg gctgcccggc aactgacttt
    16681 gttactggcc ggtggtacca gcactggcgc cccgccagca aatcaagtag tcgctgcccg
    16741 ctgatcagtt gtattgttcg ccagcactgc aggtaattaa cgctcttact acccgtccgc
    16801 cctgtatgaa taaaaaatcc acaacattgc tcccgggtaa tcagctctcc gaactcacgt
    16861 atatgctgcg gagaaatagt ccgtctgtag cgttttgcct gaattaacca gcgctttccg
    16921 tcaataaaaa cctgcccgtc aagtccgcca tcgctactgt aggtctggtt tctcacaacc
    16981 aggagtccct gcctctcaaa cgccaacaac agcagctctt caaacacata cgggttaatt
    17041 tttcgaagat actttagacg ggccccgtct gaatcaagcg ctgtcagacg gcacagcaca
    17101 cgctccgcgt tctgtcggta gcgccggtgc cggcggtcgc gtgcggacgg cattttctta
    17161 cgccatatgg caggaatgag aagacagaaa agtaaaagaa gaatggcagt gatcatgaga
    17221 gcaccctact gggccagacc ggtggcggta atcaacaccg ggtagtggtt gagatgcaaa
    17281 cgacgcgcta tttcgcttgc cgatgccggt agcagaatga catcaggtat gatttgctga
    17341 agttccgaca acgcgtcctt atcgctgaca ttcaccacca gacctgtagc atgaagtcgc
    17401 ttaagctcat cacgccgcat cgtcaaccac tcgcgtgaaa gcgaatcatc cccaacaaga
    17461 aagaccggtg tcatcccgtt cagatttaac tcacgggctt ccactttccc tgcacgcatt
    17521 tccggtgtgg ttacgggcag catatcactt acatccgcag gggctgcggt tacagacgcg
    17581 cccgtggcgt tcagtgacct cggcggagtg aactcgttgt tcttattatt gatggcatca
    17641 aaaagcggcg ctgttggttc tccgccaaga tcagcaatca cattgagtgc tgccatcgat
    17701 gatgttgtca gcaaaatact gaccattaat gtcctgaaaa aaaaacagac agaataaagt
    17761 ttcactgacg ggactccctg ggttcaaccc attgcaattc acggttgtag tgtgagaaat
    17821 ggcgctgtga tggcgatatc tgtgcgatct gaagttcgga gtacgttact ggcgcgttta
    17881 aatccagtgt tgccagcttg cgtttcacga tggacttata gattcgtgct ggttttccac
    17941 ctgcaggatg gtgataacac cccgcggcct gtatccagct tcccggattg ttgtcataac
    18001 aggatttaag aatacgggcg gcaacccgaa ggttggtata tggatccagc gcttcgtagt
    18061 aactgctgaa ataagttcca ttccagccca ggttaacctg cgcgatccca acatcaatcc
    18121 gctttaacgg atagcgacgc atgaacgaca acattgcgtc atacgcttcc tggcgggagt
    18181 tataccgata ccctttcccg gcaacattga gtgtccacgg ccacggtcgc tctccatgtg
    18241 gtagttttcg ggatgtttct gcaagagaaa ctgaatacag ggcttcagcg ggtacgccga
    18301 cttcagttgc cacaaggtgg taacccgggg gaattgtttg cagaccgcgt cccttttcta
    18361 ccgcagctgc actaccaaca cccccgataa gaaggatcag aacagggacg ctgtatctgg
    18421 ctgctgtcag aatgctgcga tttgccatcc ggagactccc tgctgaagca taaccggcat
    18481 atatccctga ccatacttca gccagttgcc gttatcgtgg ttgagggtta tctgccggct
    18541 acgaacttta tcgaccggaa tatgatgtgc aagcgcccac tggcgaatgg tgtcatcact
    18601 gccgccactg tcgaccaggt aaatatcaac cggacggtta tctgccagaa ccgcacttac
    18661 tctggcatcg cacggtacac agttgcgctt cacaaataac gccagtcttc cctgtgtatc
    18721 atgggcaata ccgctggcat tgcccatgtt tacggagaga gtattgggat aaaggcgttt
    18781 ccaggcagca tccacttccc gctgaaaggc cagctccttt tcaccccggg catactcttc
    18841 cttcacccac atttcagcaa aacgccggcg ttcgcttgcc gaaccggcct ccagccccag
    18901 tgccatcaac gggtcaatgc caggtgactg aaatgctctg ggacctttaa gtacctgttg
    18961 atactgctgc cattcttttt cgctgagtcc ccatgccgtt cctgacgttt gcgtccttcc
    19021 ttctgtagtc gtattttgct gctggggtgc gcttacactg cgacccgtac tcactgatgc
    19081 aagagcaggc agacttacga taacagccag catgactgac gcagtccact gccggaggca
    19141 atttaacgtt gatttcatcg gtttcatcca atatttctcc ctgattcaga gcgttaaacg
    19201 ttgtacctgc ccgttaacct gaaactcagc ctggttaccg ctgatgttca ccagcaccca
    19261 gcctgacaga ctctctcctg ggcttaccat gcgcagctgt gtccagccac tgttccccgc
    19321 cggcagaata acggcgtaag cctgccctcc cctgcgttca atactcacca atgtgaaagg
    19381 cggcttaatg acccgtggtt ttgacgactt ttttgcggca gactgtccac ctccgggaga
    19441 cggggtcgcc ttcgtggcag tcgccacagt gcgtttgctc cacgtgtctt tccaagacgc
    19501 gagggtatct atacgcgaag tctgctcagt cagcgcttta tgaacagcgt cgagcttcat
    19561 gcccgtttca tcctctcggg caacagccct ggcagtcgcc gcctgagtct ctttaacctc
    19621 tgtaaccagc gaagaaagtt gctgctcaaa cgcggtgagc cgcagctcct gctcactcag
    19681 cctgagctgc catttttctc cctgcagttt cggaacgaat tgttgctgcc tgtcttctat
    19741 ggcctgcata cgatcgggaa gtgtctgcag ctgtccgctg cggaacgccg catcaagggt
    19801 ggtaagctgt atctgctgct gacgtactgt cagccagagg aataagacag cacccagtaa
    19861 taagcagtac accagaacgg atgacacttt aaatatgagg gaacggcggt ctgaagaagg
    19921 atgccacaga cgactcctct ttccccccag tcggtatgca gctgactgtg ctgaagtatc
    19981 tggtgtaaca gtgatatcag acgtatcaat agccggttcg gcaggttcag tgaggtgagc
    20041 ggataaaggt aaatcattat ctgacggaat atcgacagaa gatgccgtcg ttgtcgtcat
    20101 ggtataagtc ctccggaaaa cggttttcgc catgactatg caaaaacagt tcagcggata
    20161 cgacagacaa atcaaaactc aaaagtgaaa ataagggatc cagattagcg tcaggaacac
    20221 aaactggcag cctcttgaag atatgtgcga tatggagata aagcgttgac ggggctcttt
    20281 gccgccccac accccgcaga ctgcgtcgcc accattcccc gtcagcgggc aatgccggca
    20341 acgcagtgat gatctccctg taagtcatca cttcaaccct gcgataggcg cctgccagtt
    20401 cattaagcca tgcctgcaag cgaccagttc ctgtgaaggc gaagttttaa gcctaacccc
    20461 ctgtcatggt tagttcaccc agtacgtcag ttcttcagca acatgccagt tgacgccatc
    20521 cttataagtt gttgccgcat tcgcagttcc tgataaagcg ataagaacag agaaatacac
    20581 ccgtttttat ttcataaatt gattaatcag gaaatgcttg gaaattcacc cttaggttta
    20641 tcgaatatca tagcaggaat aaccgcccca ttatccaatg cctgcatttg tcgcgctgag
    20701 aaagtgaaat aacgtaatcg gataggagga tatttttcta ctttatcttt tgtatacccg
    20761 ccaagagtga tactggttat acgccgcaat tgattatatg cctgctgaac ctgctcatcc
    20821 tgccagtcta gtgcctgata taccctgagg agcccgatcg gctcacccga aataaggggg
    20881 cgatagcgca gacacaaccc cacactttga ggtttacgcc cctgctgcca gaagaaaatt
    20941 aactcaaccg gatccactga ctgaattgac tgcagacggc ataacagaga gggggtctgc
    21001 acagcccagt cgcgctggcc gtcagccata tctaccggat aggaagagtt tcccagcagc
    21061 cagttaacat ccacatcaaa ccatgtcgac aattgctgca gcaaaggttt gttcaggaga
    21121 tcaagcgtcc tatcctgact cgctaataca ctggccctta ttccccagga agccagtagc
    21181 tgtgcctgtt cgataacatt caatccatga gcatccaaca gcagacagaa tcgctcataa
    21241 agcgtggacg ttctgtccgc tatactctct ctcgcctctg ctacaatgcc atcaatacac
    21301 ataccaaaca tagcggcccg ggatataccc agatgctctg cgcacctgtc cagaaatacc
    21361 cgagtttccg gccgtattct tactgaaaac tgtgcactgg gtgcagatac tgatgccccc
    21421 gtttcaagtg gtatttcacc agatcgcatt aatgcaatta gcgcgttata agttgcattc
    21481 atactgacaa ccttaaatat tttcctggat acaaaagagt gaaattcaac tcatttcatt
    21541 ttttcagttc tgcgttccaa tgtaatagaa agattaatct catttattca tcaggtataa
    21601 tggaatattt cggtcgattt gttctaatgt atgaagaaga ttaaaaccat gtcgacgtga
    21661 aatcgactga aaaatataat tctaaaaaaa tatttattcc gccaaccgat gaatgactac
    21721 cattatcccc tcctcagaag gcaattgaat aagccgccac tcctgtagca gcatttgcgc
    21781 aaaaatagca acacgttccc agcgcggaag cgtaatggga gcgatccgac agcgatatcc
    21841 cgtcctgtgt gaaagaacct gacaggtaag cgctacctga gctggccgca taagatgtga
    21901 acggaaaaaa acgggacgca ccggccgcgc cacgagggct gtctccagtg cctgaacaaa
    21961 tgcctggtga tagcgtcggg cctggcggcg gttcatcgcc cccacccgat caagcaaggc
    22021 aagatgtaca gcccagtatt gacggcgacg atacgttaca ctgaatacag caaacccttt
    22081 ccagggcgtg aacagcgcaa ttaacgtaaa acacgggcaa tacagcgcca gacagaacat
    22141 cacaaacaaa gcgtactcca cccctctgtc cttttttgca gaaaatgaac ggcagcagcg
    22201 taccccctta acgacgagaa taaatcacgt aaatgactat ccgtaacggc aaatttatca
    22261 ggcagcactc aaaagaggat ggatcattac ccgctcatgc ttgccttccg gcaaatcccc
    22321 ggggcgaggc acacgctctc cccgctgagc cgctttagcc agcgttcgta gcaacagaac
    22381 acctgcagcc tccagcgcac tctccctcga tgccgctgac actgaaagat tgtcaaaatc
    22441 gggtaggtga acacgaaaac cacaacagcc atctgatcct tcattaacgg attcaataca
    22501 ggcaggataa gggacaaaat agggagcaat cttttgtgtt tgtcttcggc gagcgtcaag
    22561 tttactgaca agctggtatg ctctgagatg ggtataacgt ttgagcatat tcagggaacg
    22621 gtggccggaa atagccgcca cttccataac gttgagtgtt cccagttcaa acagtcggct
    22681 aattgcttca tgacgcagat cgtgaaaatg gagatcgacg atattcaggc gctgcagagc
    22741 caccctccag gcgcttttaa aaccagatga tgaatagtga aaaacattac cgctaagtgc
    22801 gaccgtcatt ccctgtagca aatgacgcgc tttgcgggat aagggaacat ctcgcgaact
    22861 gccgtttttt gtcattggca aatgggcaac gccatgctgc aggtcgatat gttcccatcg
    22921 aagtgacaag atctctcctt gtctcattgc tgtttcaatg gcgaggtgaa atatggcgtg
    22981 aagcgctgga ttctgttcct ggaagtagcg ggataagcgc cgttcctctt gtgatgttaa
    23041 acgtcgatct cgtcctcctg atatttttgg cttacgaacc atttcaacgg ggttagttct
    23101 gcatgttccc cactctacgc tggccagatt atacagtgat gacagtaaag cgagttcgag
    23161 ccggactgtg tttcctgaaa tacaccggcc ggtacgcgta ttcacctgag acaaccgatc
    23221 atcgcggtaa gacgcaatat ccactgtcgt gatttcatcc atcatcttct ctgccaaagg
    23281 atgtcgctga atgaccctaa cacgatagaa ttcctgctga tgcccccgtt tatgcacaga
    23341 cacagtggcg tagtatttat caagggcttt cgacagagac atttttttta tgcgttgtgg
    23401 gcgagacatt gcagatacct ttgcgagaag aattgaggtt tttctccacc gtaacgaaaa
    23461 actctaatac cctcaatcct cgtaaggaca tacgtgccaa tccggtatct gggtgtcggg
    23521 tcaaaacaga ttcactacac agctctacga catagggcag aatgtgaatg cgcagtacat
    23581 aggcattcat gcttattgca gttggacaca tctattttct gctcctctag gggggcgcca
    23641 gagggtctac aatgtaggga acgcttggta tgtcacgaat accccttacg gaggttttca
    23701 aacaggatcg actgtttccg taacatgcct gaatctgccg ggtgcagggc tttaattcat
    23761 aatccggcgc caggtaagtt caaacaggtt accgaaatag tacctccgga ttcgtagttc
    23821 ccccatctgt agttagagat ataccagccg ttggaaccgt tcgagtgtat ctcctgaaac
    23881 ccgcccagag gtgaaccatt gagatatgtc catgcgcagt aggcatgcac tccaatatac
    23941 tgatttctta catttttacc gacgttaaat gtctgaatat taaagttcag ccgataagaa
    24001 ctccaaatac cggattggca cgaaagtgtg gcacctgctg tatcacgact tattgcacca
    24061 tttacaggac aagcagtgct ggcaacatta atcttatcca gcgttaaaat accgcctgcc
    24121 gatacgtccc catccgagcg aatcttccca ccgcgaattt caccaccggt ataaaacccc
    24181 ttgttattca ggatccgtaa ccagtcgtta tctgacatat acaaaccacc accatgggtc
    24241 tcatccatcc aacctttacc actgcgggtt acaatccatc cccctgtgct tcgaatatct
    24301 ccccccgcag tgatcggacc attactgacc agacttacgc caaaattccc attctggcca
    24361 gccacattac tggccgtaac agtgccgacg ctattcaggt tatttcctcc catatcaata
    24421 gctgtgtgca tcttgttcaa atccggacga ccattgacct gaaaacgata cagcctgtcc
    24481 ccgtcttcac gcgcccctga caggtcatcc gtgctcaaca tgacggccag atgacctctt
    24541 ccggtgctgg tcccgtagga ggacagcgga attcgccagc tgcgcatcgc tcccaccgcc
    24601 gtttgcccgt cttcaacgta tcctccgaag ccggcggtaa tgtctttcga gatctggctt
    24661 agcgctgtaa aaggcatagc atgaccaccg cggctgacca ccatgccctg aagcaactcc
    24721 tgattttgct gattccggac tatcatcgcc tgatactgct ggccataact gttggtctca
    24781 ctaaagctcg ccggcagcaa acctgtattc ttcagcattt gagttgttac cactgcaggt
    24841 gtagttgtgg tcgctgatgc cagcaccgtc ggataaaact ttccaacata ggatgagact
    24901 gcctgagtga aacgattggt ttgcatggcc acaacctgcc actcacggga tttcagataa
    24961 tctcccatat atctggcagc caacgaggcc atcaccagaa caatgagtaa cccggctccc
    25021 acgctcatcg ccacaaagcc gccatcatgt ttttgttttt tcatctcagt atccactcag
    25081 gctggtacaa cctatccaca atgactggta tgcaccctgc acacagccag gggcccagaa
    25141 ccccacaacg cagaaagtcc cgatggacta tccactgcca caacataaaa ccactcagcc
    25201 caaaaaacgc cgcctgcagt gcatccgtta cccccatcca gcctaccagg gcacaaacca
    25261 gccagacatc tcccacgcca agctgaggtc gccgtcggtt aacaccgtga caaatagacc
    25321 ccatcaccac cgccatcgcc gcagtttcca taaagcgaag ttccggctcc cgatgaaaag
    25381 cgagacagaa caataatccg ctacataaac aggctgcggt aaacggtcgg ggcaaccaac
    25441 cgctggtcgc atccatcact cccagttgca gcaaaaaact gcacataaac agcattccga
    25501 tacgtgtcat ccagacctga ggtgccataa gtatcagcaa acccgttacc gcaaacagcc
    25561 agatacccac cacgacggca caatggcgtg agatatccac ctccgctgcg gccagataaa
    25621 gacgtaccgg ccttaaaagt accgccccga aaatggcgca cccgataaaa gcaggtatgg
    25681 catacacagg aggaaaaatg gtaccgataa gagagactgt cattgagccc ccgtttgccg
    25741 ctgataaatt ttccagatcc ggtttgcata acgctcccgt gtttcatgcc ggtcaggccg
    25801 gaaacctgcg ttataagagc ccaggcagtt ccagctcacc ccacagacct gaaaatgttt
    25861 cgcaaggatc cacgttccaa tctgcacatt caggcagggt ttgttcagca aatcattttt
    25921 gtccctgatg acccccatcg agacaagacg gggaatatgc gtagaattca ccatcatcag
    25981 tccataatcc gtgcttttga ttttccccgt ttttttgtcc cggttatcat ttgttgcatg
    26041 cggatcaaga ttactttcac caatggccat ggacttaatc agcagcgggg agacatggta
    26101 tttcgccgca gcggcatcaa agcagaatgc ctgtacccac agcggcacac tgcacagcgt
    26161 catgaataaa gccagtcggg aaaaatatcc acacatcccg cctcctcagc cgttgtagtt
    26221 aaaaaccagc gtattggtac cggtccggcc attatctgca gtgcattcac tgctcgcgat
    26281 ttctgccgtt actttcgcat cggtgtggtt attgccgttt attttaatac cggacgtgcc
    26341 gcctgaacgg ctcatacctg ttgaaatgga tacgcaggca gattgcggaa ctttgtttgt
    26401 ggtaatggtg aacccattat taaatccggt tccccccgct gtatccggcg ccaccacaat
    26461 ctggccaccc catgagttcc acagtgtcgc ggaaccggaa gcagggtctc cactgaccgt
    26521 catccctttt gccgccccgg cctgaattaa cgtgtcggtc attttagcgc cactggtaaa
    26581 agcataaccg tcaacgcctt tcatcatgcc aatggtgttc gtggccaggg tctgatagtt
    26641 tgtcagctcc gtacccgcat cctttttacc ccacatcgac cagaccgccg cggctatcac
    26701 cccaatgatc accagaataa acagtgcagt ggcaccggca tctgccgaca ttccccggtc
    26761 aggcctgttg catggattta atgttgatac ctcattcatc atctttccct ctgtttcatt
    26821 tttcattgaa ttgcttaaca tcagtactgc cccatactct cggtcatcga agtcgcctca
    26881 atcaccgcca cgaccacaac gccaataagc gcaaataaca tcaccattga gaacagcatc
    26941 acggctattc cccgtcggtt aactcgcttc acagtttcct cgagccattc ctgcccaaag
    27001 cgcgcaatca tctgagcggc cccgtcccca ctgaccatag agagatagtt cacggcttct
    27061 tttgagggga aggcataacc acattcacgc agcgccatac caaaagaggc cccctcctcc
    27121 acttcctcca tcactgcgtt cagacgtaca acgagccagg gagaagcaaa gcggtggata
    27181 acctgcagcg cagtcagggt tctgacccca gcgcacagca gagcccccat attgatgaga
    27241 aaaatcgcgc cctgaatatc actgtaaacc gcccagggta catgtctgtc cgcaagacga
    27301 cgcagacggt ccggacgtat ccagttcgac agggaccacc tggtccatgc gaccaacagt
    27361 gccagcccgg cccccatcac cacgccatgc tcagtaaaaa aaatcagcag gccgttaagg
    27421 cttcccagca ctccggtcca tgtctgcgga tctgacatcc cggccagcgt tggaataagc
    27481 tgcgtctgaa taacacccag cgtgccaccg agcatcgcaa tgcaacctag gggataaacg
    27541 gccatcctca tgatcgcctg tcggatacgc cgccggcagt caatcaggat ttccgcctct
    27601 gcgagcgcct caggtaaccg accactgaac atacccgcgc tgatgagcgc cgcctcctcc
    27661 gccggaaccc agtttgcaag agcatgctca agggagttat ccccgctgtt gtcagtgagt
    27721 gccgcccggc agtcgtccac cagaaaaccg aaaccatgag tccgctgccc aaaatcggta
    27781 tacatattgc tgatttgctc cagcgcctct aacaacttca cgccatttct catctgcaac
    27841 gacagcatgc ggtaaaaacg cagacggtat ccggacgtaa aaaaacgtcg cgccagcgcc
    27901 cggcgaagac ggtataaagg actcatgcaa cctccttcag cgcagccatc ccggcagcaa
    27961 cgccttcttt aatggcttcc tcaacaccct gcttcatccc ctctctgacg ctggctgcaa
    28021 ttaccatggc aaggcgttca atcagcgacg tatcaatgtc actcgacgat gcaacctgat
    28081 cacttaccac ctgcatcacc tcatcctcat caagaggaat aatcaaatcg gcatccagtg
    28141 ggtcaaccag cccgtcattc agtttgtgaa gcagatgaat gcgacgggta atccccccca
    28201 tttcacggat ccagtaagct tttgcagctt ccttaccctg ctgtaataac agcctgaaaa
    28261 gcgtagaatc cgtgcgaacc acctccgcca ccacactgcg tccggccacc cccttaccga
    28321 ctgttgccac ctgtttgcca ccgataatga ccgccttccg gcaggtcggg cacccctcct
    28381 catttctgaa atgaagattt tcgggctgac aaaccccctc cactgaacag tacttttcca
    28441 gatattcacg ttcttcggtg gtgagatgtt cttttttaac cgaccaggga atacggcact
    28501 cgggacacag cacctgaacc agacgctggc tgataagccc gaccaacaac tgggcatctg
    28561 ccaccagtcc ggcatttgca cccatcgtta tcattcgctc agggatggaa aaggccgagt
    28621 ttgaatgcag ggtactcagc accagatggc cggtctgggc ggcaaaaatc ccggccagaa
    28681 tggagataag gtcacgaagt tcaccaggta aaatggcatc cggatcgaga cgtaacgctg
    28741 aggtcagcac ccgctgccag gccagcctga cttccgcctc atcggctttg tcacagataa
    28801 taggagtctg tattgcccca acgatgcgtc cctccggcgg atcttcaacc gtcagtaggc
    28861 gctttttata ccgggtacgc ttcagataga ggtcgctgca ggcacgcagg gtggtggatt
    28921 tcccggctcc ggtcgggccg gacaaaataa tcatcccttc tggcaggcgc aaagtgcgct
    28981 ttatcaggcg gatttgtttc ggcagaaaac cgagtttttc gagcgtggga accacatcac
    29041 catcatccgg gatcacgcgc atcacaaagt gaaggccatc tgctgtcggg gtgtggctgt
    29101 aacgggcgcc aaataacccc acctttcgca gaaactttgc agccacacga ccatcctgtt
    29161 ttcggccggc gtagaactgg ggttcggtca catcacacat ggaaaggatg atagtggccg
    29221 cctgtgcttt tccgtcttct tcagccagtt ccgaaacggt ctccagttca ccgtgcacac
    29281 gcatctcgat gcgcgtcagt cctggccggg tggtaccgtg aatatcagac gcgccgatat
    29341 ctttcgcgac cataaaatag ttgagaacat cgccctgacg gctgctgacc tcttttttga
    29401 tgtcctcaag gcgaagtcct ttttctccct tctctgactg ctggcgagcc atttcactgt
    29461 acctgagcaa ctctgaacgg gttaccagcc tcattgtgac accggggttt tcctccatca
    29521 gagacattac cttctgctgc accgccacgt cggtacgccg ctggctgtca accagcagct
    29581 cgaggatcgt ggtgtccggg ttgtggtaaa gcagaaccgc atcgttgtgt tcagacataa
    29641 ttcgtcccta aaacgtcagt tgctgaccgt cactgagcgt gacggatgag agcgttattg
    29701 ccttcacctt cagtgatgtc cccggaatca cacttcccgt ctgtaccagg ctttgtcggc
    29761 catccggaaa tgacagcgtg gcctgcaggg cgttaccacg gccactcact tccagaaccg
    29821 taattcgtcc agttgcaggg ggggtgtgaa caggagtcgc attcatctct gccggcattc
    29881 ccataacgaa cggactggtc gtgggcacat tgccaacatc ccccggagtt tgtgcagaag
    29941 tcagctcttt tagcagtcgg gctgcctgaa cctttgcctc caggagcagg tttttcccct
    30001 gcagcgcctc cagctgtccg gccgtcacgc tgttaccggg gaaaatgggg actgtatctg
    30061 ataagtctgc agaggatatc gatgccgctg cttccgtagc gggttcactg gcaggcattg
    30121 cagaaatcac ctctgcggaa ggaggaactg cgagtgtggg ctgcgaaaat gcccctgcgc
    30181 tgaacgccat caggagaaca ccactgatga aaacactatt ttttggcata agcataaaga
    30241 tgcccctcaa tctgataagt aaactgtccc tgaggactca gggtgtaacc cacagaactc
    30301 agccgtaccc cctgcatatc gagtccctgt aaaatccact caggcatgtg tttatcagtg
    30361 atactgaacg tgtattcatg ccagtcctgt atcggctggg gcgcatcgtt gccggcacca
    30421 tcaccgggca tcgcgggagg agttttcact tcggacagag aaaaactgac ctggcgtgac
    30481 tgaaaccacg acaccgcctg catcaactgg gtccccgcat ccggcgcagt ctcatcctgt
    30541 aatgtgaatt tcgcccatgg aataaacacc acaccttcgt tgccacctga aacaaggttg
    30601 aatactggtg tacgcttaaa aacctgcttc acccgctccg caaagcctgc cgccgtccca
    30661 ccgggctgcc gctggtacac cgtctccagc ccctcagcac tgcaacgaat ccgttcgaga
    30721 cgccaacggt caagacttac aggaactgcg gcgcgccagc gctgacagcg gttcagaaag
    30781 tgtctggcca caggcatatc tgcccaggga tgtggaaggt aaacaggttc aggtgttttt
    30841 ttaaacacgt cctgcaccgg tgccggtaac tcctgcacga caggcgcgac cggaggttcg
    30901 ggtaacctgc tccaccagac tgcaccacca agcagggcag ccactgacag cactcccgcc
    30961 ccgtatggcc gcaaaggatt agacacgccc gccactctgg caaaccggag ctgtgccgaa
    31021 gatacctgac cgaccaaagt gttccaggac aaggggaatt ccggtgatga aggtatcgtc
    31081 catccgtcct caggagcagg gttgaaggac agaaagagct ctctcgcccg gatgatttga
    31141 tctggagttc cgatcacatc tgccatcgga gatggcatcc ccttcaccgt ggccagaaag
    31201 acctgtctgc catcatcaag ctggtatacc ccatagccat tgggtgtaca ctgctggctg
    31261 aacagcgccg ccagggaata cagcttctgg tgacgccagc cggcctcaat ttgccccaac
    31321 gcggtcaacc ggctcttgcc ctgcttcacc gtcaacacaa cgttcagaac accccgacgt
    31381 tgtacagggg ctcgacgtac cgacttttgc ttttcttccc agcgaagccc cgctacccag
    31441 ttctggcgct gccagcgcag aacctgcgta cggggcttgc cggataacgg aatatctgcc
    31501 atatcagcca ccgttcccca tcagctccgg ggtgataata atgaccagcg tactacgaga
    31561 atcatcgccg tcccgaccgc cacccagcag gaaattaccc ggggtaaagg tgccgttttt
    31621 ggtcatccgg gtattactct gatcaaaacc tgtcagcacc agtgcctgcc ctgcgcgaag
    31681 gttagttttc tggctgagcg agcggagttt ggtgtacggc atctcgatgt acgagttgcc
    31741 gtctttggac gtgaagttac gaatagtcgg tgggtcagac aggttgaatg ccacctgcag
    31801 ttgcacgtca ccaccatcct gaatcagtgg cagtaacgtc atgttgaagc cggtagtcat
    31861 catacccggc gtcagggatg tgggcaccca catcggttgt ggtagtagtt gaactctgtg
    31921 ccacgtagac cgtctggtcg gccatctgaa taggtacagg tgtaaggttc gtggtcacgc
    31981 taccctgcga ggtgaccaca ctgacatcgc cctgctctga cagagcttta atcagcagac
    32041 tggagccggc aaatttagcc gcacttccgg ttgctgaatc cagaatagat accgacgccg
    32101 acgttgcgtt ggtgatatca ccacttacat tattgagtga agcaccggct gagcgcaggg
    32161 acttgtaaac gatattccag tccagtccca gttgttcctt acgtgaagta ctgacactca
    32221 gtacctgaac gttgagcctg acctggcggt tcatctgacg gttctgctgc tcaacatacg
    32281 ccgcgatact gttgagtaca gaaggggtat ccgttaccgt cagagtgccg gtactggccg
    32341 acagccagaa acgtcccttt tgcggagtca ccatggtttc cagcgtcttt ttcatatcgt
    32401 catagacatt acggctctgg tcgaccgtcg tctgctgcga agagcttgaa tcccctgaca
    32461 ccgaactgtt tgtactgcca ccactggttc ccatactgct tgttgaaccc gaggtaacac
    32521 tggcattact ggtaatattg gtattcagaa atgtgaactg gaaagtacgc gtctccagga
    32581 gtgaaaacag aattgccccg ttatccatac gcggggtgag gcctgtcctg gccgaaatca
    32641 tgtccagcag accggacagt ttgccctgcc agcgcaggcc actcagtacc actggtgtgg
    32701 cggtcgcgcg tgccgaatca acagcgccgc ccagttgatc caacggaatt cttccattgt
    32761 tatccggtgt ggcttcgggg ttgcctttac cggcaggtat tcagaacggg gatgtggtct
    32821 acctcaatta ggaaaatctt taatgataag aaaatattac aaagtcaggc tccgtattgc
    32881 agctacagcc atcgtcgccg cactttcgct gccggcctgt acttttcagg aaatggacag
    32941 gatgtcgcgc agtgcgcaag ccagcggtga tattgcccgc ggtcatgtca gtgagcagat
    33001 gcgatcctca cagggagcgc tggtctggac ggataaaccc tgggtcaatc tcaaacccgt
    33061 cccgacagtg tcacggggta tccctcagga aaacttccct gactgtcaga taacgctggc
    33121 acgggacgga ctgactctgc cggaagttgg agagcgaatc actgcgcttt gcggcgtcag
    33181 ggtaattttt tcacccgatg cgctggcagc aggtcagtcg tccggtacca cgcgggcact
    33241 gaatggtcca ttaccgatac cggataacca gaccagttgc ccctgcgtca ccgtgccagt
    33301 taatgccgac ccacctgact gttcacgcag cgcatccacc agacccggga cttcaggcat
    33361 ccagacccac agccggttag ccacaatgac atgtcggata cggctgtcag gagccaccgg
    33421 cagggccagt tctgacaagg cgaccgttcc gtccgtcagg gtatgtcggt agcgccagtc
    33481 attaattccc gcagccagca ataacatttg ccgggccaac agatacgaac tccccgactg
    33541 ctgcgctttg acaacctcgc ttcgctgagt ggtctggaca tgtccgacga caagcagaaa
    33601 tactgtgccc agagcgacaa tgaaccagcc catagctacg accggtcagc cggtttatcc
    33661 gcaactgaaa ccaggcactg caggcgggaa gcttcagcaa ataagggctt gtcagctttc
    33721 ttataaaggt caaacacctg aaccagcgcc gtctcaaagt tgcctttaaa taccaacggt
    33781 gcgtcaatgc ggtaatccgt aggggtctgc cagataacca cccagtgtcc tccccccgga
    33841 cagtcagctc ttccggccca gtcagtcagg gactctttga gcgtgctgcc gacaaccgcc
    33901 ttccactcag ggccactggc cactgcagct acaggcgtac cggttaacgg ttttgttgtc
    33961 gtggccagta ccgtagccgt cgccggattt acagccttaa cggttgaggg agacggtgtt
    34021 ttagcctgag ccttctctcc cacaggcgcc ggtgaatgag acgccgacag ggtggtcccg
    34081 gtcaggtttt ttcctgtgaa cggattgcgc ggagccggag aagagacttg tttcacgggg
    34141 ggggcagagg acactcctga cgttaccggt gtcccaccag gtctcagggc agggacagga
    34201 agtgactgac tgaccggttt cagttcagta cctttcttcg ccgccaggtg ctggccggcg
    34261 atcacgggtt cagctttatt ccccggcaga acgccggtat aaggattgcg ggtggtttcc
    34321 ggggaggagg ttcttgcggc gccggtcacg gcgggtgtga cagatgtcag tgctttagtt
    34381 ttagcctgta cccgatatgc atcacgcaat acgaaacaga cctcccggtt gacttcatcc
    34441 acggacattc gccaggcagg accggcgacc acctgcagtg cctcactgag tcgcatcggc
    34501 ccaattttgc gctgaacggc cggtaacggc cggttcagca gctcagaaaa gtcagcacca
    34561 taatgtccgc acagggaata accagactga aacagcaggt agcgaaatcc gtcaccgact
    34621 gagttaacca gttgccctgg catagtaata tcgatgagct ggttgagcgg ttcccgctgc
    34681 gcatccgcac ttttaatact gaccagcgtg taacgcccgc tgcgagtcac ctccggtgat
    34741 cgctggtaaa tatcagagaa gacggaaggc tgctgactct gtgcaaatgc gctgtcgcga
    34801 gcggtttggg tggaggtctg ctgtgcacac ccggcaatca ccagcggcag gctcaggcag
    34861 aaaagcgctt gtgtgttcat gaaaaatccc gtggatgacc gtaattacgg caatcgtgcg
    34921 gagatttggc ttagcgctca ataaacaact ctttatgcaa aaatgaaaaa aaaagccagc
    34981 atcattgctg gcattctgca tacatgaatt tactcaatgt aaagaaggtc gataaccctc
    35041 gatgttaatg acgcggttgt tccagcgtct cgcggttcag acctgtggat ttaatcacca
    35101 cttccaggct gacaccattg tcaagcaagg catacgcagt ttccagtaac gtcttctgct
    35161 cacgctcaag gctggcctga cgctcctgct gaatactctg ctgaataccc tgctggatac
    35221 cttcttcttt cagttgctgt gcaattgtgc ccatgatcaa ctccttatac tccgggatct
    35281 caccggccag ttcgtataaa aacggcgtga tactctcgct tgtcatgcca ttgtagataa
    35341 tataacacag gacggcttcc acctgcgccc gggtatttcc ggctagtcaa atcagctgta
    35401 caacatcacg cagcagcgat gcagcgtcgc gatgccggat atcccgctga accagctcca
    35461 gtaatgccat acgacggtga gactgcaggt cgcagtcctc catgacgctg acatccacca
    35521 ggggccacgg tcgggagtaa acctcccgcg ccagcgccgg tacatcgaaa cagtccatcc
    35581 agtctgtact gtatgggtaa ggccgcacca ttccctgata aaacagtaac ggcaccacca
    35641 ccggcagtgt cccgttaccc tttttcaggt gggcatccat cactgccatc gagtaacgca
    35701 tcatccgcca ggccatcatc cggtctgcgg tcgactggtg ttccacaaga cagtatatgt
    35761 acccggcgtg accttctgcg gtttccaccg aatacagtac atccgagtgc agttcgcgaa
    35821 gcttctgatc cacaaaacta cccggttcaa gcttcagcgt atcgagacga acctgcgcgc
    35881 ggatatctgc gggaagatga actgccagga aatccctcgc agtgtccggc tcacgcagaa
    35941 aaagcttaaa caggccatcg tgcccgggcc ggttatgacc cttttcgtta tccattccgt
    36001 atccttcata tgttcaaaac ataatgcctt ccacaggaag gcattattca gcgacaattt
    36061 tcaggacagc acataaagcg catgtctggc cacactgtgc ccgaacggcg cgaacgggat
    36121 atcatcgtcg aagtccattg gcggctcatt tgcaggatgc tgttgaggtg gcatcccgct
    36181 gtgagaaggc gctgctggtt gctgaggctg accccagccg ccctgttgct gcccacttcc
    36241 cgcactattt cgtccgccca acatctgcat cgtacctgac tggctgacga ccacttctgt
    36301 agtgtacttt tcaacgccag actgatccgt ccatttgcgg gtgcgtaatg caccttcgat
    36361 gtatacctgg gagcccttac gcagatactc actggcaatt tcggccagct tgccgtaaag
    36421 aaccaccctg tgccattcag tgcgctcttt tttgtcaccg gtctgtttat ctgtccaggt
    36481 atctgaggtt gccagactga ggtttaccac ggcaccgcca tttggcatat aacgcacctc
    36541 aggatcctgt cccagatttc ccaccagaat aactttgttt acacctttag aagccatgag
    36601 tatctctcct taagcctgtt cacgctgtga ccatgtgccc tgtttgagcg catgttctgc
    36661 ctgagactga gtggaaaagt actcaacaga ttcacgggat accggccctt cttcattttg
    36721 cgtgccgatg taatatccgg caccactgcg aaggacctgt aaaggtaagg ataacccggc
    36781 aaattttgct gccagtaaac cagtagaaga tgatggtgaa gttaacattg attgttcctt
    36841 ttacattaag tcaggaacac accttcctga cggaaagtgt gtttccatca ggaagggtta
    36901 aggagaactc agaacgaatc ttccgcgtac tgcttctgcg cgggctggct ctgggccgga
    36961 ggagtggaat ccggtttttc tgccttatag acaattgcac cgtcaatttt tatccagtca
    37021 acccggatga ggcgagtctt caggctgaca cggttttcac cggcatgatc accttttgca
    37081 agggtaaaaa tatcggattt gatcccactg agaacaaaac cgatcattac ttttttgtcc
    37141 tcatcacagg acttctggca gcggttaatt aaactcgttg cgtctttgcc tgcgactgtg
    37201 acatcaaagc gggtgtagtc tgcattatct gtcggaccac taagggcatt cagcgtacaa
    37261 caggtaaact tactgttacc gttgacaacc tgacgtacat tcgtgatata gcccagaccg
    37321 ttgatattca gattaaagta gttagtttct ttagacatga tgtttctcca tggaatgaaa
    37381 tcgttgcgga gaaaacatct accctggcgg gatgatggat tcccgcaggg atatcaacgc
    37441 tggcaaaacg ctgatgatca ataagtttaa aatatcttca tcgcaaaatg ctgcgacagc
    37501 cgtttccaaa gattaaaggg ctgtaccacc cgaaggcgtc acctctcagg ctacgatgac
    37561 attggtgtgc aatcacccga aggcgtccct ctcagattgc cggaacattg gtgttgtgat
    37621 cacccgaagg cgctcctctc agatcactgg aacattggtg gtcgctaagc gacataaggt
    37681 tcgcgaccat ttttagaaca ttagttaacc ctgtcaaccc gttaaatatt ttttgtctcg
    37741 ccataaaaaa atggccctcg ctaacgcgaa ggccatttct caaccaaact gttgcaccag
    37801 aacatgaggt aaaatcaaat ctccgaagcc ggtcaatggc tcagcgcggt tttcacggag
    37861 tgattgcgct ttgaggacgg atccttcgag taaagatcgt tctcctgact ggagttgcga
    37921 aaggcatgca aagctttcga accgttccac agccatgggt gctgctctta tcaaagcgat
    37981 ataaggctac cagaattcag cgaaagaaaa caacccgtta gtattctagg ctggcgaagg
    38041 ttttcgtctg cgtcctctgg ggcccttgtt accattgttc acgatacctt tgcactccgg
    38101 atatttcagg cagccccaga acaagccact ctttccattg cgctgcaacg tcttgccgcc
    38161 acatacagga cagggtggtg aaggtggcgc ctgcatagtc agtggctgtg atctcccctg
    38221 agcgaccagc tgactgaccc actgactttg ctttgccata aagtcatcca ggctcaccct
    38281 gcctgcagct acctcatcca gcatctgttc ccacagtgcc gtaagtccgg gattcgttaa
    38341 cgttcctggc aacacatcca ccaggttacg tccaagaggt gttgacttaa gcgtcttttt
    38401 ctcacgcacc agaaacccac gcttcaacag cgtgtcgatt atcccggccc gtgttgcttc
    38461 agttcctatc cccgcattct ctttgagcac ctttttcagc gcggcgtcag taacgaacgc
    38521 cgccgcattg gtcatcgcgg caataagagt tccatcgttg tacggagcag gcggttttgt
    38581 ctgcagtacc ttctgctcag cgccctgcac ctggcagacc tggcccgcct gcatggcggg
    38641 cagtgtggtt tcaccagtat tatcctcatc atcttcggac attttgccaa acagagattt
    38701 ccagccgggt ttcaccaaaa cgttaccacg ggtacggaaa agctgaccgc caatattaaa
    38761 tgtggcctca gtcacgtcaa tttccatctg gggcaggaac tgggccaggt agtgcaacct
    38821 gaccagctga tagacattgc gctcagcatc actgagtttg ctcagatcac cagtatgttt
    38881 tgtcggaatg ataccgtgat gagcggtaat ttttttatca ttccagatac gtgacacaaa
    38941 ctgagtgtcc agactcgcga ccaccggctg tagcgccgga tcagttccga ccacagcaga
    39001 cagtacctgt gggatttctt ctcgcatcga taacggcaga taaccacagt cagttctggg
    39061 ataggtcgtc agtttgtggg tttcatataa cttctgggcg atatcaagta ccgtctgggc
    39121 tggcatcccc cagtgtcggg agcaggcctg ttgtagtgtg ctcaggctga aagccagcgg
    39181 cgctgattgt tttttcctct cgatctggca attgattatc gcagccgttg gcgtttgccg
    39241 acacaactga accacctgtg ccgctacccc cgactggata caacgcttct cttcatcgca
    39301 atactgtgca gccggtaccc atttggatgg aaacaacacg ccattcacgg ccatcgtggc
    39361 aataacttcg aagtacggtt tcgacacgaa gttatcaatt tcacgatcac gctttaccac
    39421 tatcgccagc gttggcgttt gtacccggcc aactgaaagt acgttaccga tacccgcttc
    39481 acgccccagg agtgtaaaca ggcgagtcag attcataccg atcagccagt cagccctgct
    39541 cctgcccacg ccagcataat aaagcgattc agttcgggaa gacggccaca aatcagctaa
    39601 cgctgaccgg atactggcat catccagagc tgacatccac aaccggaata cacgcccctg
    39661 aaacttgcag taatccagca actcacgggc gattacttca ccttcccggt cagcatccgt
    39721 ggcaattacc acctcatcta cctgtttaag cagacggtta attaccgcga attgggcttt
    39781 tgcatccgct ttgactacca gtttccactg ctgtggtaat aaaggaagca catcggtgcg
    39841 ccatggctta ccatactgtt cgccatatac ttccggttca gctgtctcca gcagatggcc
    39901 gcgagcccag gtgactgtaa ctcccggacc attcaggaat ccttcgcctc tttgagtggc
    39961 gccaagaaac ttcgcaatat ctctgccctg agaaggtttt tcacacaaca ccagacgcat
    40021 gataacactc ctttcagaaa accagccttt ctgcgggctt aaccatcgat gcgtttcgaa
    40081 tcagcgacaa ataaagaagg gtcagccaca atctgttctt ctaacggttc ttacagtaat
    40141 tgcacaatat ctgctttgtc tgcttttgca tttgccgcca gtagaagttc aatactctcc
    40201 ttactgactg ggggtgaaaa agaggaacgt ttttgcccca acaaaacagc ttcgtcaatt
    40261 tcacctgcgt tcctgattgc ctcatggtac tgagcattct gtaatgcaaa atcgcggcgg
    40321 ttcacctgaa aaaaacgata tttctgagcg gcaccataga tctgacggat tagatggcct
    40381 ccccgtcgaa ggctacggtg aagctcttgc cgggagataa aaccataatg cgcggcctga
    40441 aaagcctgca ttgccagttg gtcaaagcca accagaagcc atacacatcg ataacccaga
    40501 ggtgtacgac tgaaaactcc aatatttaaa ggagaagcac agttgacctc agaaatagtc
    40561 gcctgagggg gtagcattga cattgacttc ttgagtgcaa caagctcttc attcatcttg
    40621 accgaagcgg actgcaaaag tgtctcaagc tcaagcatct tctgatcagc atacggattg
    40681 tcattaaatg aatcggcatt aatacgacct gctttttgaa tgaaggctgg catactgaaa
    40741 ataagactct gacgacgctc ttttttcttc ccctcctttt ccccctcttc ttccggagga
    40801 cgcccctgcc acaaatttat tgcataatca gtattcaacg ctatgttcag cgccgaacgt
    40861 aaagcacccg cttttctgga cactgatacc tgttctttct cactcatcac caacccctca
    40921 ccatcgaata aaacgtattt agtgagggcg ataattagtc aggtaagcca gaagtcacaa
    40981 tgcaaaattc ttaatccaaa gattaggttt tcaataagtg gtcgttttgt actatgcagt
    41041 ctcgggcagt aaagctcatt ttttaaccaa caagccttct ggcagaccca aatacactca
    41101 ctggttattt tttataccat gctgccactg gcagcaaagc tcatttttta accaatacat
    41161 tttctggcag acccaaatac agtctctggt cattttttat accgtgttgc cactggcaac
    41221 aaagctcact ttttaaccaa tatactttct ggcagaccta aatacagtct ctggtcattt
    41281 tttataccat gctgccactg gcagcaaagc tcatttttta accaatacac tttctggcag
    41341 acctaaatac agtctctggt cattttttat accgtgttgc cactggcagc aaagctcatt
    41401 ttttaaccaa cacactttct ggcagaccca aatacagttt ctggtcattt tttgtaccat
    41461 gctgccactg gcagcaaagt atatttttta accagtcatt gagaggaatt cattctctga
    41521 cgaatttgct ccaccatcgc cttcacgact tcctgacctg cagggacatc agcttcagct
    41581 gagcatgtcg ggattttccc ggcagcggat ggctcagctg gcacgacaga tctgctctta
    41641 acaggctgag tgacagcagg ttccagacga tacagtcctg ccctcgcttg cctgagtgta
    41701 gtcagcaagt agcccaccgg attgctgata cgtttctggt gccagccatt caccacgctg
    41761 agggcgatct gttcagcctg aactggtgat ttctgtgcaa gctgattcaa ctgttgagcc
    41821 agcatgggtt gttcactttc cggcaggatg gactgcagac catcaggcca cacgaacccc
    41881 tcgggtattc cggcaaccgc atttttgcca ctctggggag atacgtacgt ttttttaatc
    41941 acactttgtg tgaaagaacg tacgttattg cagtccggtt gccggactct gtcgtaactg
    42001 tctgatttca ggctgagtct gctatccgga ctcggtgatt tctcccccct ctcactactg
    42061 ggtctgttta ccggactaag tgatttatgc tcatttttta tgctattcag actgagtccg
    42121 gtacccggat tttgatgagt gcgggcaaca tcacccacct tggacgggcg ggtcagacgt
    42181 tccgcaattt ccgtcatccg cgaatgcctg tgacgcatca tcggatcatc aagtatcccg
    42241 ttcagtacat gaaaggccgt gtcgctgacc tctctgtatt tgtgctggca ggctttaccc
    42301 accatatcca gccatcccgg gtcaaacatc tctgcatcct tcgcactgac tggttcatca
    42361 tgctgggcgt aaatatttcc ccgtacccgg cccccggtat cacgcacccg cttgcacaaa
    42421 ctcaaccagc ccgttagtcg aagcatggtc agcgcacggc tcaccgtatc gcgtgacgcc
    42481 tgtccggaac cgggggaaga aagcagtttc tgaagttcat catatgaggg gaagatggcg
    42541 ccgtcgttct gcagggcata ctgccgtatc attatccagc acattttatc cagaggagaa
    42601 aggcgcatat ccaggattag cgcccgcggg taggcgtcgt gaatattacc tgtaaacagc
    42661 agcccgttac gctcctgccc cgacgacccc ggcgtaccgt caagccgtgc ctgcatcttc
    42721 gacaaggtgt agtcaatgat atcatctgca ggcaaacggt gaacggatga accgggttct
    42781 tccatcacct gagccggagt ttgcatcgtt ctttctgttg ttatcgatgc gtctctcatc
    42841 gtttcagttc ccggttatag gtctggtgag acataaataa ccagctttta cctgcatcct
    42901 tactcagcag acgccagcgt aatcccagat caatcttgag ataacctgtc tgtcctatct
    42961 ggctgtagac tcgctttccc tgctggtaca gggaaagcag tgtacgcgcc tttgacgtga
    43021 cagctttact cacatttctc gggtcagtac ggtaaaactg aaaggagggt gccagtgaat
    43081 ccatcaggct acctcccccg tacaccagtt tttgattaat ccccagatca ccgtgagact
    43141 gacatcagcc tcttccgcaa taagcatcat agtttcaaga gagttaagac tttctatatc
    43201 gctgatattg gcctcatgcc agagacgcca tatcttcgct tcacactcct catcaggtga
    43261 ctggcaacgt ccctgacgtg tctggatccc ctcgagccgc cgtttagaac tgacatctga
    43321 agcattcaga ccaaagaaga tccccatcat ctctattgat gcaccaagag caatagcacg
    43381 atcaattcgt tcgctacgct tttgctcacg attggcctgg tccagcattc gttttagatt
    43441 ttcatgatgt attgctacat ttaaaacaga aacagggctg cctgacagat aatgcagttc
    43501 ttccatcgtc agacttctga ggagacgcat ttcttcaggt ttcaacccca gcgcctcaca
    43561 tcgccgaata tttccacctc tcagttccat aaccagattg aacaaaagac tgttggcacc
    43621 ctgtgcaagt gaaaaagtca tatcgcctcc tgaacgtgaa cactttcatt atccaagaca
    43681 attaattgat tacaggcccc tggagcgaga ataaacgcca gaacgttaac cattggatac
    43741 ctcctgaagc gaatgctcct cactgcgata gtccatagcc ggataaatct cagcctgcct
    43801 accagctgtc catgcagcct gcctcacttt tttggcgtta cgacaccctt ccggctgccg
    43861 tactttcgca ggggtcagat tgcgctgctg ctgtgttaac cagcggtcga gtagaacttt
    43921 ttctgatgtt tcaggttcaa atgactccag aaccgtccat actccggcca cccagtacaa
    43981 acggtattca tccatacggc gacggatagt ggaaagtttc agtaacggat gtgcgcacgc
    44041 ggtatggaga taatgttcgg catcacgctt caactgacgg gagacaacgc caaacagata
    44101 acccgccacc gccggacgtt caccaagccc gtaaaatgtt acgctgcgac gcttcttatg
    44161 atcactgttc tgataccagc cgtaatagct gcgacagccc gcggtcatgc aaaccactgt
    44221 aaccagagca ttcagccaac ccggaaccga aagagcatta ctggggatat tcctgcaggt
    44281 ctcacttgtt atttctcccg gtaccacgct cgccggggtt acatcgtatt tcatcatcaa
    44341 tgcctgggcc tgccgtaaag ccactgatgc ctcataggga ttacctgttt tttcggccag
    44401 taccattagc ttcttgatac gtgaaagaac tttttcattc gccgacacga gtcacctcct
    44461 caatttccgg atatgccaca atatcaagca tctcaggacg aatacgggtc agccttagct
    44521 gaacaccgca acacgggcag gcatcaaata ttaccgacag cccgcgcttt gctgcattca
    44581 ctacgcctcg acttccgaca ggaataaccg ccagtccact gctcagctcc tgtgtggtga
    44641 caaccgtggc accgacccac tggtaatgtg agcggggctt tttcagactc ttcattgttt
    44701 tttgtctcct gattctcgcc attcctgaca gtacatgcac aggcttaccc cggggatgga
    44761 ctcacggcgc gagtcaggga tttcatcacc acagtcccga caatgtcgtc gtgatacatg
    44821 tcccttaatc cgaagagcag cccggatttc ggcaaacctg ttgtcaatgt ttacctgcga
    44881 ttcgttctga gccatcgaat catcaacatc aatgctcatg cctcctcccg tcattttgtt
    44941 cagccgccat atttctctgc agctcgcgca gacggcgaat aacacgaata aggcgcagac
    45001 tcttcactac atgcacatcg tcaaaaacag gcgtatctcc cgctgattgg gagccaaaga
    45061 agttgagaca gaacataaac atgttgaatt gtttattcgg cacgtgaccg gaaagccctg
    45121 ccagaaaaag agcaaattct ccgccgtgtt ctgaaacaga gaacccggcc gcactggcat
    45181 ttttatcttc actgacatga acctcacagc ccatcgcctc tgcaagttca taagcaagcc
    45241 ggtaagccat gtcctgcaga tgttcgatat catcctgcag agccggaatg acccagatat
    45301 cagtaacagg ctcgagccct acgttggcaa actcaactga ggaaagtgct ggttctgtgg
    45361 gtaaaagtga gagacccggc atctcgctgg caatactaac ggcgtcagaa ggagtatccg
    45421 cagtcaatcc cacctgagcg ccagcgaaag ctgatgcact gacagcgata tttccggcgt
    45481 cgggaataaa gtggtactca tcaggaataa catcaccggt taaaactgag ggccccccga
    45541 ggaaatcgtt ctggacttca gctttaggta aacgaggtga tccacaagaa ccgaaccatt
    45601 cgccggtcac atcatcgtta tccccattgt cattatctgg atctggttgt ttaggtaaga
    45661 caggggcgtt attcagcttc ggttttaaag aggaaccgcc ttgttgattc tcatcgtttg
    45721 cagtacccgg caatgatgca gtgctctgcc atgtctggcg atctgcatcc accagatgag
    45781 atgccacagg ttctggctca ccaaataact ttctctggtt acgtgcctta ggatccagct
    45841 caagtagcca ccgatcatag ttaagagaag ggtgtggtaa aacattcacc aacataccga
    45901 taaactcatc tctgaacatt tcgaaggaat acacctccgg atcgtcaaac tgagtacaga
    45961 catgaccgaa aatctcatta aaatcactat cagtctcagt catcaccgaa tattgctgcc
    46021 aaatttttaa agcatcagct cgcaaattta ataaattaac tatctggggc ttacctaacc
    46081 cagaaaccag caactccggc ataaagggat aaagatattc caccgtatgt tccatacggc
    46141 tgatcattga gttgtgaatg gggtatccct gctgtccgag caggtccgcc agctctcgca
    46201 gggttaccgt tcgtccaaga gtttcttcat gaatggcgcg ggcttttttt attcccagcg
    46261 ctttgtcgat aaaggttaga tcccccctta catcattctc ggccagatgc cctaccagac
    46321 attcaagcct gccaggccat ggcttgaaca gagcatggaa gcggtaaaag cgttcatcct
    46381 gtgtttcagc aaacagctct cgcagaatgg cgtagcgggt gttaccacca tcgctgaaaa
    46441 tataaggaga gccggggata tccgggtttt tcgtcacttt cgggaccgta tccagaccac
    46501 gggctctgat ggattccttg atttcatcgt acttaggatt gcgtgttgtg cgaggattgt
    46561 ccggattagg agctacctca tcgagcgtca gcaccatcgg catttcactg gtcggcataa
    46621 tcgcaacagc agcggttgta gctgcagatg attccttcgc cccctgtagc agcgcattat
    46681 taagatttaa cagtggtgct ttagccatag ctcacctccc cataaccaag gtgatactcc
    46741 gagaagcgca tatactcccc ctcaaagcga actttgacag tgcccagcgg cccctgacgt
    46801 tgcttaccca gaatgatttc agctatgcct ctatccgggg agtgctcgtt ataaacttca
    46861 tcgcggtaca ggaacatgat gacatccgca tcctgctcca gtgagccgga atcccgaagg
    46921 tcactgacca tcggacgttt atcctgacgc tgttcaacgc tgcgattgag ctgggataaa
    46981 gctgccacag ggcaccttat ctctttggcc agtgacttga gcgaacggga aatctcctga
    47041 atttcctgag tgcggttctc ccggccagga caactcatta actgaagata atcaacaaga
    47101 ataagtgagg gctgaccgta tttacgcaca ttacgccgcg cgctgatacg taacgtggaa
    47161 ggcgtctgat aactggtatc gtctatcagc aaacgtcctt cccaggaggt cagttttgct
    47221 acggcatccg caagtaaact ccactgccct tcgctcagca gacctttgcg caggttatcg
    47281 aagggcactc tggccagcat tgaaagcaga cgcattatca gctgctgggt tggcatctct
    47341 atgctgtaga actgaacggt cttgccggga ctgccttcca gcgcagcaac ggcatgtttc
    47401 agtgcttctg ccgttttccc cattgatggc cgggcaccca gtaaaatcag gtcaccgtcc
    47461 tgccagccac aggttttctc atccagttca gcaaaacctg tcgctgtacc ggtcacaccg
    47521 cttcccccac tgaccgattc cagccagctg accgtgtcag cgacctgagt cgttacgctc
    47581 agacaaatgt cggggtcaca ggcctgctga gccagactaa ataactgctt ttcggccttt
    47641 tcaatcagac cgggtatatc cgcatcgccg actgaggcca gttgatgtag ctcatgcccc
    47701 agcttaacca gccgtcgctt acgactgtac tcgcgcacaa tttcggcata agcaacgata
    47761 ttggcggcgc tgggcgtgtt ttttgacagt tcagccagat aagcgacccc cccgcaccgc
    47821 tccagcagat cttttcgctc catggattcg gacagggtta tcaggtcaat gggcaggcca
    47881 gcactgacca accgttctat ctcccgaaaa atgatctgat gctggccata ataaaaatct
    47941 ccggaattca gaagcggcgc aatttcatcc cagcggtcgt tatcgagcat cagtccgccc
    48001 agaacaccgg tttcagctcc gacattaaac agcatggata ctgcagaaac agatttatgg
    48061 ctcatacctc atccgccccc tgaccaaatc cgggctgagg ccggttaacc agaaccgcat
    48121 caaacttatc tttccattga ggaaataact cacagaccag gtggtgcatg gactccgctg
    48181 ccggcaggct tacccggtca gttttatatt cgagacgatg tactggctgc ccgcacgcat
    48241 gcccacgttt gtagacttcc agttgctcta tttcggtatt cagcattgat atggcaatac
    48301 ggtctgactg ggggtactga cctttatcca cgattgcctt gagttcgttg agggtgtttc
    48361 gatccagtac agtgggttca acacagttgg cgagaattcg aatatcggga atatggatac
    48421 cgtagggttc cagaaccaga agtttggata aaagacgtac agtgccgcgt aggaactcac
    48481 gtacatcggg taaaatcggt ttaataacac ccatgacgct ttgagtcgca gcgagcacca
    48541 cgagctccac catcaccccg ccagcgcctt tggaatcgac gattatgacg tcatattgtc
    48601 tgaaaagagg atgctgcagg acattacgca gacgcattct gccatcagct gcatgcagca
    48661 tatcattgga aagacgatcg tcaggatcgt tggaaatgat gacgtcaaga ttgggaataa
    48721 ccgtgcggga aatgatgctg tcaggtttgt taaggtcagc agtctgcatg agtaattcat
    48781 acagtccgca gggtgcttca tagtgaagtt taaaaatact gctggctgtt ggctgattat
    48841 aatcaccatc gattagcagt gttttcagac cagcatcggc ggtgtaaccc gcaatattgc
    48901 ctgccttggt tgacttccct tctccgccct tagtggatac tactggcaat actaccggga
    48961 attgttgctc atcagggagt aacaacgaat gcggtgaaac ctgctgtgcc aaatgaatac
    49021 tggcgtctgg ttttctttct acagactccc cggttgaaac ctggggggaa cacttaacgc
    49081 gagatacagt ttgcatgcaa tacactcgaa atttattcga atgtgttcgc ctgcctgcta
    49141 ccaattcaaa aagtcaaagc ggtgtctaac tttttgacaa ggggattgaa aatccccgtg
    49201 tccgtggttc gattccgagt ccgggcacca cttattcaga aaatccagcc tatggctggg
    49261 tttttgcttt tctgggaatg gaaatccgta gcccccatct ctggcctgat tagctataac
    49321 gggaaggcca gattttctct ggcgcaacgc ccagcgcttc ggcgatcagc cgctcatctt
    49381 tgggcctggg tcaaaagctt acttagctac agggagatta ttaccagtaa taacgcgtat
    49441 cactccatct gacggttcgc tagcctcgac aagtgaatcc aatatctccg ccatgaactt
    49501 tttcatcact gacaacaaca attccttcgc caattttagc attttttctt tttcggtttc
    49561 tttattctta aatactgttt ccgactcttg ttcataatca taaattaata ctcagtacat
    49621 catgactgat ggtagttatc ggggtaacag agcacatact ttaaaataat tattcatact
    49681 gtgttattac ggaaagattt taacctaatg cgtgtcagtc aggcacgcag ataaaaaata
    49741 accggggaca aaagttaaac aaaatgctgt tagccggaag tatcagtatt gttctgttgt
    49801 ccgctacagt cagtccggta tggacagacg ataatgccag tgcagcgtcc tgctttttta
    49861 cctgtatgtt gaataaccat ttcaataaat cattatagaa tcacatctgt ttattattgc
    49921 ctgatccggg gtgagtcttt atgaaaagtc gttatttact attttttcta ccactgatcg
    49981 tagctaaata tacatcagca gcaacaatgc aaccctttca ttctcctgaa gaatcagtga
    50041 acagtcagtt ctacttacca ccaccgccag gtaatgatga tccggctttc cgctatgata
    50101 aggaggctta ttttaagggc tatgcgataa agggttcccc acgatggaaa caagctgctg
    50161 aggatgcaga tataagcgtg gaaaatatag ccagaatatt ctcgccagta gtgggtgcta
    50221 aaattaatcc caaagatacg ccagaaacct ggaatatgtt acagaatctt ctgaaaatgg
    50281 gcggctacta cgctactgct tcggcaaaaa aatattatat gcgtactcgt ccctttgtct
    50341 tatttaatca ttctacctgc cgtcctgaag atgagaatac tttgcgaaaa gatggctctt
    50401 acccttccgg gcatactgct tatagtacac ttctggcatt agtattatcc caggccagac
    50461 cggaacgcgc gcaggagctc gccagacgag gatgggagtt cgggcaaagc agagtgatat
    50521 gcggtgctca ctggcaaagc gatgttgatg ctggccgtta tgtgggagca gtagagtttg
    50581 caaggctgca aacaatcccg gcttttcaga agtcactggc aaaagtccgt gaggagctga
    50641 acgacaaaaa taatttattg agtaaagaag aacgccccga acttaattac tgaaggtgaa
    50701 agtcttcccg caaactggcc acagcaaatg aaaggaagtg caactgcgta ggggcgaccg
    50761 ggcgtggaga acgcctttgg tttccccgat tcgcatgaat tcaacgtccc cgtttgcagt
    50821 ccgtccagac cgtcatgacg tcgttgtccg gctgaagcgg taaaaccggt ctggctcact
    50881 gactatccac agcgaattcc ggccatcaga agctaaggga tgcgttctgg agtttaaaca
    50941 ctctccacca aatcccccaa cgtcaccatc aacatcatcg gatccatcgg cgacggtaca
    51001 aaccccaccc actgataaaa ttcccgcgct tcatccgaca gggcgtgaac cagcatccca
    51061 cgaatgccga tagtctccgc cacctgaata acccgcagcc ctgcgtcgcg taccagcgcc
    51121 cgagcgacgc cctgcccatg aagcgattta tccaccgcca gacgccccaa taccacaacc
    51181 ggaatcgggt caggcatatt gcgacgaaag cgaccggggg aggtattcgt cgtgaccgcg
    51241 ctggacgcca gcgagtaata ggccagtacg ttcgaatcgc tgccacaaca cacaaaggta
    51301 cgggacgcgc cagtggtctg atttttcatc gcccgctgtt tcagccagtt atctatagaa
    51361 tccacaccgc agcaaaacgg agtaagaata tgtccggcat gaagcggctc aggggtggag
    51421 atcatttttc ctgctcccac ggcgcagggg tctgcatggt tttacgcagt gcggcattag
    51481 gtgaaggtgt ttgatccaaa cgaacgagaa attcctgata agcctctgga tcggccataa
    51541 tgatgcgttg ttcgataagc acttcttctg cggcagcacg ggcagcttcc aacacaaagt
    51601 ctgtgcggtt tttccctctg gctttcgccg ctcgatcaat aagatcgcgc tcggcgggtt
    51661 tgatacgcag gttcagagtt tcacgtttca tcgccatact gtttgcggct ggcatagtgt
    51721 tgtcctcttg tacttctgtg gatattaagt atacaacacg cgtaacgcag atgtcattac
    51781 gataaattta gaaggaatgg aaccggagta gcgaaccgaa aggttttcta ctcatttata
    51841 gattcagtac caggctgtgc gctggcattc gctgtgagtg attcctcctc ggggccgacg
    51901 cagcaaaaga ttcaatactg ccgcgccaaa acacgcaaca ttatataatc agaaagcata
    51961 aacctaacgg atacgcacag taagaacctc aataacgtgt tacatcgttt ttcataaagc
    52021 caaccatacg attgaatgtt tccc
//
LOCUS       DAJVSD010000005        49512 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.005, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000005 DAJVSD010000000
VERSION     DAJVSD010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 49512)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 49512)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..49512
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.005"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(5..1405)
                     /locus_tag="OQP62_000204"
     CDS             complement(5..1405)
                     /locus_tag="OQP62_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HCS1719854.1"
                     /translation="MKKITLYATTVITVGLLCYLGLSGYVWYYDKQRSKKSDVQASVV
                     GENNKILGYFREKGCDYCHTPSAELPFYSSFPVAKQLMDYDIQLGYKSFNLEAVRAAL
                     IADTPVPQSELNKIEWVMQHQTMPPTRYVALHWAGGVSDKERTDILNWIADQRERNYA
                     SADTDPAHRNEPVQPIPRNIPVDAKKVDLGFRLYHDERLSGDSTISCAHCHALNAGGV
                     DGRKTSIGVGGAVGPINAPTVFNSVFNIEQFWDGRAATLQEQAGGPPLNPIEMASKSW
                     DEIISKLDKDPVLKKDFQAVYPQGFTGENITDAIAEFEKTLITPDSAFDKWLRGDENA
                     LTAQQKHGYQLFKENKCATCHGGIILGGRSFEPLGLKRDFNFGEITAADIGRMNVTKE
                     VRDKLRQKVPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGTDLPQNDIDDIVAFL
                     ESLTGVYTPYQPEYAQ"
     gene            complement(1595..2227)
                     /gene="torD"
                     /locus_tag="OQP62_000205"
     CDS             complement(1595..2227)
                     /gene="torD"
                     /locus_tag="OQP62_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD"
                     /protein_id="HCS1719855.1"
                     /translation="MIKQPALAQEQYACVYAWLALLFFREVDDEGLIQLQSAEIADWL
                     ALLKRQPALAASVALLEQKIAALSLRQDAQLELAADFCGLFLMTDKKSALPYASQYPQ
                     QEPGMIKHLLLEAGMEVNDDFKEPADHLAIYLELLSHLHFSLGESFQQRRMNKLRQKT
                     LSSLLEWLPEFTNNCLKHDPYGFYAALSQLLLAIVRFDDGKEDLSIVAVE"
     gene            complement(2220..4772)
                     /gene="torA"
                     /locus_tag="OQP62_000206"
     CDS             complement(2220..4772)
                     /gene="torA"
                     /locus_tag="OQP62_000206"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HCS1719856.1"
                     /translation="MKNKDSLHVSRRRFLAQLGGLTVAGMLGPSLLTPRSARAADAVA
                     PGAATKEGILTGSHWGAIRATVVDGRFVAAKPFEQDKYPSKMIAGLPDHVHNAARIRY
                     PMVRVDWMRKGHQSDTSQRGDNRFVRVSWDEALDLFYQELERVQKTYGPSALLTASGW
                     QSTGMFHNASGMLARAIALHGNSVSTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLV
                     LQNSKTIVLWGSDMVKNQQANWWCPDHDVYQYYEQLKEKVASGAISVISIDPVVTSTH
                     DYLGRDKVKHIAINPQTDVPLQLALAHTLYSEKLYDKNFLDNYCVGFDQFLPYLLGEK
                     DGQPKDAAWAEKLCGIDADTIRALARQMAGDRTQIIAGWCVQRMQHGEQWSWMVVVLA
                     AMLGQIGLPGGGFGFGWHYNGAGTPGRKGIILSGFSGSTTVPPVHDSTDYKGYSSTIP
                     IARFMDAILEPGKIINWNGKSVKLPPLKMCVFAGTNPFHRHQQINRIIEGWRKLETVI
                     AIDNQWTSTCRFADIVLPATTQFERNDLDQFGNHSNRGIIAMKQVVSPQFEARNDFDI
                     FRDLCRRFNREAAFTEGLDEMGWLKRIWQEGSQQGKGRGIHLPTFEVFWNQQEYIEFD
                     HPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMQYDDCQGHPMWFEKIERSHGG
                     PGSQRWPLHLQSVHPDFRLHSQLCESETLRQQYAVGGKEPVFINPQDASARGIRNGDI
                     VRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGDLNALCKYGNPNVLTLDTG
                     TSQLAQATSAHTTLVEIEKYTGPMDNVTAFNGPAEMVAQCEYVPASQGNPHD"
     gene            complement(4762..5946)
                     /gene="torC"
                     /locus_tag="OQP62_000207"
     CDS             complement(4762..5946)
                     /gene="torC"
                     /locus_tag="OQP62_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentaheme c-type cytochrome TorC"
                     /protein_id="HCS1719857.1"
                     /translation="MRKLWRALLRPSTRWSILALVIVGIVIGVALIVLPHVGIKLTST
                     TEFCVSCHSVQPVYQEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDLYQ
                     TFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQNPEAARQM
                     KIAAKENQSCIDCHKGIAHQLPDMSSGFRKQFDELRASASTHNDGDTLYSLDIKPIYA
                     AKGDKEPAGSLLPASEVKVLKRDGDWLQVQIEGWTETDGRQRVLTQLPGKRIFVASIR
                     GDVQQHVKTLEETTVAATNTQWSKLQATAWMQKGDMVNDIKPIWAYADSLYNGTCNQC
                     HGAPDKAHFDANGWIGTLNGMIGFTSLDKRDERTLLKYLQMNASDTTNTPHSDKGEHN
                     EK"
     gene            6076..6770
                     /gene="torR"
                     /locus_tag="OQP62_000208"
                     /pseudo
     CDS             6076..6770
                     /gene="torR"
                     /locus_tag="OQP62_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462724.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator TorR"
     gene            complement(6743..7783)
                     /gene="torT"
                     /locus_tag="OQP62_000209"
     CDS             complement(6743..7783)
                     /gene="torT"
                     /locus_tag="OQP62_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMAO reductase system periplasmic protein TorT"
                     /protein_id="HCS1719858.1"
                     /translation="MRTLISFFFLIIIVSNVETASAETGLLHWTRADRAIPWRQTSVN
                     ASKPWKLCALYPSLKDSYWLSVNYGMQKAAKLYGVDLKVLEANGYRQLATQQQQMTQC
                     REWGADAILLGSSTDRFPELERYAGNVPVIELVNMIHDASVATRIGLPWFQMGYLPGR
                     FLVQWSKGKTLNVLLFPGPEEAGGSQEMVAGFRQAIKGSAINIVDIAWGDNDIEVQRN
                     LLQEMLERHPDANVVAGSAIAAEAAMGEGRNLTTPLTIVSFYLTHQVYRGLKRGHILM
                     ALSDQMAWQGELAITQSIKVLQGQPVPENISPPVLILTHNNADSARVRRSLSPPGFRP
                     VYLYQYTSEAKK"
     gene            7863..10598
                     /gene="torS"
                     /locus_tag="OQP62_000210"
     CDS             7863..10598
                     /gene="torS"
                     /locus_tag="OQP62_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMAO reductase system sensor histidine
                     kinase/response regulator TorS"
                     /protein_id="HCS1719859.1"
                     /translation="MSTPSLTHRLWLAFALMAALTLLSTVIGWISLRVISQVEQTNTQ
                     ALLPTMNMARQLSEASAYELFSAQNLTNADSEGVWLAQGKMLKAQSLKINHLLQALSE
                     QGFNTSAIARQEKEIAQTLGQQGTLVGEILTLRAQQQQLSRQIAEAAESIAAQAHGQA
                     NNAATSAGATQAGIYDLIESGKGDQAERALDRLIDIDLEYVNQMNELRVNALRFKQLI
                     VTLKDAQGLSDAEETDEKLNQLVKILSRRQQRIEDPTVRAQIADALGKINQYTTLVTL
                     FRKENAIRDQLQTLMANNLFQFTRFSTEVSQLVNAIEKRNEAGLARLTHASQRGQIGL
                     VILGILALCSLSFILWRVVYRSVSRPLAQQTQALQRLLEGDIDSPFPEAAGVSELDTI
                     SRLMEAFRANVRKLNRHREDLAEQVRSQTAELHALVLEHRQARAEAEKANEAKSTFLA
                     AMSHEIRTPLYGILGTVQLLADKPLMANYRDDLQAINDSGESLLAILNDILDYSAIEV
                     GGTNVSISEEPFEPRQLLNSALHLMHSRVQVALITDFSEQLPSTLQGDPRRIRQIVIN
                     LLSNAAKFTDRGSIVLRTFCDDQSWFIEVEDTGCGIPEAKLTAIFKPFVQATGCRGGT
                     GLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLPVRHPKPASKSAFREPVNLNGLRL
                     LLIEDNMLTQRITAEMLTGKGVKVSVAESANDALRCLAEGEPFDVALVDFDLPDYDGL
                     TLAQQLMSLYPAMKRIGFSAHVIDDNLRQRTAGLFCGIIQKPVPREELYRMIAHYLQG
                     KSHNARVMLNEHQLAGDMASVGPEKLRQWVALFKDSALPLVEEIEAARAMNDDVNIKR
                     LAHKLKSGCASLGMTQATEACRELELQPLSDIDIKTIVTQGVTALDAWIAGHPSP"
     gene            complement(10703..11830)
                     /locus_tag="OQP62_000211"
     CDS             complement(10703..11830)
                     /locus_tag="OQP62_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006762570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4056 domain-containing protein"
                     /protein_id="HCS1719860.1"
                     /translation="MRTIVRVIFLALLFLAGSARAALPLTLYLSTLPMPAASEAWPTM
                     PPQPLPKGLRPCCAFGYDLHAELLGLPVPFYQLNNVVTVDSLGHHQYNDHLYSGVANL
                     IGLSGENNGIVYTLRGGFIDTAHVRDTADMTVYIFSQLLPKLGQAFTLNLGEELAERR
                     LVFTAFTPPVDARERYTLAAWLSAHLAFQVAEWHEIAQWYGFESVRGFSEGVSAFSPE
                     DLYSNLAGARLAASLIVDGQTKTQEMYNTAMETALRQALTQLAAQPAQITRFQFDMLD
                     GRWWNSQRRVPEKYLVLHRNYQMGDDRLPTAVPGEITSLLPLSLPHRWRGIQLSTLAQ
                     LQLWPSEDMAQLPPPAHYYSEKDFAALAEQARLQDEKTQNH"
     gene            complement(11827..12966)
                     /locus_tag="OQP62_000212"
     CDS             complement(11827..12966)
                     /locus_tag="OQP62_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001528293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HCS1719861.1"
                     /translation="MNRCHCRQLLCVAGVLSGVAQAALPSRSQVDGWLQQMGDSDTYD
                     AAKGVNWGVMPGPFYTPELGLGIGTAIVGMYRPDPADKVSQISTLSLSGYFSSTGAFG
                     VSLQNYAFFAQDRWRFFLTGALSDTPTYYWGQGFAAGDKDSHKQAYTAQVLDLQPMLY
                     RRLVNNIYLGVGWTLDVQHAAQINEDDPPRIQHTAQGGSSLSNGGSVEISWDDRDFMP
                     NPRKGQYATLRYTHFAPDIGSDTRFDEYQLHYSQYHAVDDKDVLAWEADGAFTQGYVP
                     WNMLPLLGSNHRMRGYYEGRYRDKNAVSGQLEYRHKLSWRHGVVGWVGAGTMGSSLHH
                     LDDGRWLPSAGVGYRFEFKPRVNVRLDYGVGKGSSGFYFQVGEAF"
     gene            complement(12963..13985)
                     /locus_tag="OQP62_000213"
     CDS             complement(12963..13985)
                     /locus_tag="OQP62_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001528257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1719862.1"
                     /translation="MKKRSLLLLALPAMAFSTWAATSPPANLSPVYSYQDDVPSAATP
                     PVATTPVAKPASTSVLPFLGDEARKRGYELPEPFGLNINYMNIGQNINVDSINFNGLA
                     LGPNGGIPLDNAFKINVGHTREKSKTETVKLDAWLLPFMNVYGLVGYTDGHSVSQIGV
                     GLMTKNGHVFHPADLQNLKFKLDFKGTTYGIGTTLVGGVGNWFTAVDANYTQTQFDIL
                     DGSIDAFTVSPRVGYRFTTPGIDKMHLPSGKLNVWVGSMYQDVQQEFKGSLDDLTMPS
                     ATLQRLVSMANYNNNGRFDVKQHLQSPWNMLLGAQYEITRHFNVTTEFGFAERNSFFV
                     AGEYRF"
     gene            complement(14187..14999)
                     /gene="yidA"
                     /locus_tag="OQP62_000214"
     CDS             complement(14187..14999)
                     /gene="yidA"
                     /locus_tag="OQP62_000214"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase"
                     /protein_id="HCS1719863.1"
                     /translation="MAIKLIAIDMDGTLLLPDHTISPAVKNAIAAAREKGVNVVLTTG
                     RPYAGVHSYLKELHMEQPGDYCITYNGALVQKAGDGSTVAQTALSYDDYRYLEKLSRE
                     VGSHFHALDRNTLYTANRDISYYTVHESYVATIPLVFCEAEKMDPNTQFLKVMMIDEP
                     AVLDRAIARIPAEVKEKYTVLKSAPYFLEILDKRVNKGTGVKSLAEALGIKPEEVMAI
                     GDQENDIAMIEYAGMGVAMDNAIPSVKEVANFVTKSNLEDGVAWAIEQHVLS"
     gene            15288..16550
                     /locus_tag="OQP62_000215"
     CDS             15288..16550
                     /locus_tag="OQP62_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1719864.1"
                     /translation="MSMALTAPPGRKRFLIVACLFIGIFIAYLDRVNVSVLAANEPFL
                     AYMGIEGMPLQIGMMMTVFLAAYGIANVVLSPLGDYLGPRKAMMLCILIWTIALIIGG
                     VATSFALIIICRILLGIGEGFYYPLQSVFIKNWFPKQERGRANAAWIVGQSVAPAIAM
                     PFFTWWIGTHGWRSNFFLCAALGLIPLWLLWRYVADKPEQHKSISEQELAYIKAGQET
                     ESASSSESFMLRVKPVITNYCYWLLVLWYLCLQCLYWGMITWLPTYLKSARGFSWAEM
                     GWLASLPFVLSIFSKAAAGVFVDKIGRSAPILMVLMFFAGISIYFGTITEHKYMSAVL
                     LSFAVAFCTMGTPVAWTLLQGMVSGKSISAASGVMNGVANGLSSLSPVFIGLFISITG
                     TYTGGLLCLVFISAIAVVSAFVLTIKKY"
     gene            16564..17757
                     /locus_tag="OQP62_000216"
     CDS             16564..17757
                     /locus_tag="OQP62_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HCS1719865.1"
                     /translation="MMKITSIDIIDVANDFASATSKWRPVVVKINTDEGISGFGEVGL
                     AYGVGASAGIGMAKDLAAIIIGMDPMNNEAIWEKMLKKTFWGQGGGGIFSAAMSGIDI
                     ALWDIKGKAWGVPLYKMLGGKSREKIRTYASQLQFGWGDGSDKDMLTEPEQYAQAALT
                     AVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIA
                     EMHAFTDTTSAIQFGRMIEELGIFYYEEPVMPLNPGQMKQVADKINIPLAAGERIYWR
                     WGYRPFLENGSLSVIQPDICTCGGITEVKKICDMAHVYDKTVQIHVCGGPISTAVALH
                     METAIPNFVIHELHRYALLEPNTQTCKYNYLPKNGMYEVSELPGIGQELTEETMKKSP
                     TITVK"
     gene            17872..18780
                     /locus_tag="OQP62_000217"
     CDS             17872..18780
                     /locus_tag="OQP62_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001054600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1719866.1"
                     /translation="MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQ
                     MEVSLFDRTSRVVKLSPDGEKFLPAAMRVVEEFQRAENYARDLKEIKKSLVRVVGAPL
                     IACAFLPQIIHAFKRQHPHTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQ
                     TLFTTEIALYCHPDYRLHKKTVRWEEIQSEELIAVGNESVPMISATAGVRIKPKMTVE
                     HMATAMSLAAQCEGVVIAETFSRHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPAT
                     QRFKEFLFRYMDEHHDALASQRRAGD"
     gene            complement(18787..21201)
                     /gene="gyrB"
                     /locus_tag="OQP62_000218"
     CDS             complement(18787..21201)
                     /gene="gyrB"
                     /locus_tag="OQP62_000218"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HCS1719867.1"
                     /translation="MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVV
                     DNAIDEALAGHCKDIVVTIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG
                     KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT
                     DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY
                     EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQR
                     DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS
                     QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMT
                     RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI
                     LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT
                     LLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATL
                     HANAHAPALSGEALEKLVSEYNATQKMIGRMERRFPKALLKELVYQPTLTEADLSDEQ
                     TVTRWVNALITELNEKEQHGSQWKFDVHTNTEQNLFEPIVRVRTHGVDTDYPLDHEFV
                     TGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVTSFEQALEWLVKESRRGLAIQRYK
                     GLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALK
                     AANIDI"
     gene            complement(21230..22303)
                     /gene="recF"
                     /locus_tag="OQP62_000219"
     CDS             complement(21230..22303)
                     /gene="recF"
                     /locus_tag="OQP62_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HCS1719868.1"
                     /translation="MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIY
                     TLGHGRAFRSLQPGRVIRHEQEAFVLHGRLQGEERETSIGLTKDKQGDSKVRIDGTDG
                     HKIAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQ
                     RNAALRQVSRYEQLRPWDKELIPLAEQISTWRAEYSSAIAQDMADTCQQFLPEFSLTF
                     SFQRGWEKETDYADVLERSFERDRMLTYTAHGPHKADFRIRADGAPVEDTLSRGQLKL
                     LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISA
                     EHVIDMSDENSKMFTVEKGKITD"
     gene            complement(22501..23601)
                     /gene="dnaN"
                     /locus_tag="OQP62_000220"
     CDS             complement(22501..23601)
                     /gene="dnaN"
                     /locus_tag="OQP62_000220"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006177590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HCS1719869.1"
                     /translation="MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSL
                     TGTDLEMEMVARVTLSQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSG
                     RSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLF
                     ETEGSELRTVATDGHRLAVCSMPLEASLPSHSVIVPRKGVIELMRMLDGGENPLRVQI
                     GSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNE
                     KFRGVRLYVSENQLKITANNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCE
                     TVRIMLTDSVSSVQIEDAASQSAAYVVMPMRL"
     gene            complement(23606..25006)
                     /gene="dnaA"
                     /locus_tag="OQP62_000221"
     CDS             complement(23606..25006)
                     /gene="dnaA"
                     /locus_tag="OQP62_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HCS1719870.1"
                     /translation="MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPN
                     RFVLDWVRDKYLNNINGLLNTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPTQTTT
                     AQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNP
                     GGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAI
                     EEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEING
                     VEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRE
                     LEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKIAD
                     LLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREES
                     HDIKEDFSNLIRTLSS"
     gene            25667..25807
                     /gene="rpmH"
                     /locus_tag="OQP62_000222"
     CDS             25667..25807
                     /gene="rpmH"
                     /locus_tag="OQP62_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001686914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HCS1719871.1"
                     /translation="MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV
                     SK"
     gene            25824..26183
                     /gene="rnpA"
                     /locus_tag="OQP62_000223"
     CDS             25824..26183
                     /gene="rnpA"
                     /locus_tag="OQP62_000223"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014172301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HCS1719872.1"
                     /translation="MVKLAFPRELRLLTPAHFTFVFQQPQRAGTPQITILGRLNSLGH
                     PRIGLTVAKKNVRRAHERNRIKRLTRESFRLRQHELPAMDFVVVAKKGVADLDNRALS
                     EALEKLWRRHCRLARGS"
     gene            26147..26404
                     /gene="yidD"
                     /locus_tag="OQP62_000224"
     CDS             26147..26404
                     /gene="yidD"
                     /locus_tag="OQP62_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HCS1719873.1"
                     /translation="MAPPLSPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEA
                     LRRFGVIKGSWLTVKRVLKCHPLHPGGDDPVPPGPFDTREH"
     gene            26407..28053
                     /gene="yidC"
                     /locus_tag="OQP62_000225"
     CDS             26407..28053
                     /gene="yidC"
                     /locus_tag="OQP62_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HCS1719874.1"
                     /translation="MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQTQQTMQTTTTAA
                     GSAADQGVPASGQGKMITVKTDVLDLTINTRGGDVEQALLPAYPKELGSNEPFQLLET
                     TPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAFVLADGQNELQVPMTYTDAAGNT
                     FTKTFVFKRGDYAVNVNYSVQNTGEKPLEVSTFGQLKQSVNLPPHRDTGSSNFALHTF
                     RGAAYSTPDEKYEKYKFDTIADNENLNVSSKGGWVAMLQQYFATAWIPRNDGTNNFYT
                     ANLGNGIVAIGYKAQPVLVQPGQTGAMTSTLWVGPEIQDKMAAVAPHLDLTVDYGWLW
                     FISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQA
                     MRERLGDDKQRQSQEMMALYKAEKVNPLGGCFPLIIQMPIFLALYYMLMGSIELRHAP
                     FALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLW
                     FPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS"
     gene            28195..29559
                     /gene="mnmE"
                     /locus_tag="OQP62_000226"
     CDS             28195..29559
                     /gene="mnmE"
                     /locus_tag="OQP62_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HCS1719875.1"
                     /translation="MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPKPR
                     YADYLPFKDVDGSALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPG
                     VRIARPGEFSERAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLV
                     EALTHLRIYVEAAIDFPDEEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMK
                     VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRD
                     ANDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVR
                     NKADITGETLGISEVNGHSLVRLSARTGEGVDVLRNHLKQSMGFDTNMEGGFLARRRH
                     LQALAEAANHLEQGKAQLLGAWAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSF
                     CIGK"
     gene            29742..30929
                     /locus_tag="OQP62_000227"
     CDS             29742..30929
                     /locus_tag="OQP62_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001608974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1719876.1"
                     /translation="MKRFLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAF
                     SVYLAGMATAMLFAGKIADQSGRKPVAIVGAIVFMMASLLCSRASEGSLFLSGRFLQG
                     VGAGGCYVVAFAILRDTLDEHRRAKVLSLLNGITCIVPVLAPVMGHLIMLRFPWQSLF
                     YTMSTMGIMVGLLSLFILRETRPARLAPRDLSPSSSAAESLVNRFFVSRLAITTLSVS
                     VILTFVNASPVLLMEVMGFSRGDYAITMALTAGVSMVVSFSTPFALGLFKPRTLMLVS
                     QGLFLTAGVTLSLAHTNTVTLFGLTLICAGFSVGFGVAMSQALGPFSLRAGVASSTLG
                     IAQVCGSSLWIWLAAILGISAMNMLIGILIGCSIVSILLIFSVAPNRSVAEHEEIPYQ
                     SRS"
     gene            30898..31857
                     /gene="yidZ"
                     /locus_tag="OQP62_000228"
     CDS             30898..31857
                     /gene="yidZ"
                     /locus_tag="OQP62_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator YidZ"
                     /protein_id="HCS1719877.1"
                     /translation="MKKSLTSLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLA
                     KLRAWFDDPLFVNTPLGLAPTPLMVSMEQSLADWMQMGNQLLDKPHHQTPRGLKFELA
                     AESPLMMIMFNSLSQQIYQRYPQATIKVRNWDYDSLEAITRGKVDIGFTGRESHPRSR
                     ELISLLPLAIDFEVLFSDLPWVWLQEDHPALREAWDLDTFLRYPHISICWEQSDTWAL
                     DDVLQEMGRKRHIALSLPGFEQSLFMAAQPGHTLIATAPRYCQHYNQLHQLPLVARPL
                     PFDAQQREKLMVPFTLLWHKRNSHNPKIVWLRQAINTLCRRLI"
     gene            32015..32770
                     /locus_tag="OQP62_000229"
     CDS             32015..32770
                     /locus_tag="OQP62_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HCS1719878.1"
                     /translation="MATHFARGILTEGQLVSIRLSSSCHIEARNLPAHRRTRFLASRG
                     LLAELMFMLYGISELPEIIIQAKGKPAFRDKNLPGFSISYAGNMVGVALTTEGECGLD
                     MELQRTSRGFHHPHSLERHPFSRNENLWVANQNDPNEARAQLITLRQSVLKLTGDVMN
                     DDPRELQLLPVAGRLKCAHVTQLEAVCDAEDVLVWSVTVTPAIEKLKVWEFDGKLGWK
                     SLPDIQTRANEPTGRLMRFAQLPAAKSYTLNRS"
     gene            32770..33354
                     /locus_tag="OQP62_000230"
     CDS             32770..33354
                     /locus_tag="OQP62_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462749.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HCS1719879.1"
                     /translation="MKKGARMSEMLNVVTLLGSLRKGSFNGMVARTLPKVAPAGMTVS
                     PLPSIGDIPLYDADIQQEEGFPASVEALAEQIRNADGVVIVTPEYNYSVPGGLKNAID
                     WLSRLPEQPLAGKPVLIQTSSMGAIGGARCQYHLRQILVFLDAMVMNKPEFMGGVIQN
                     KVDPQTGEVVDQGTLDHLTGQLTAFGEYIQRVKA"
     gene            complement(33399..34736)
                     /gene="adeP"
                     /locus_tag="OQP62_000231"
     CDS             complement(33399..34736)
                     /gene="adeP"
                     /locus_tag="OQP62_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine permease AdeP"
                     /protein_id="HCS1719880.1"
                     /translation="MSQQHTTQASGQGMLERVFKLREHGTTARTEVIAGFTTFLTMVY
                     IVFVNPQILGVAGMDTSAVFVTTCLIAAFGSILMGLFANLPVALAPAMGLNAFFAFVV
                     VQAMGLPWQVGMGAIFWGAVGLLLLTIFRVRYWMIANIPVSLRVGITSGIGLFIGMMG
                     LKNAGVIVANPETLVSIGNLTSHSVLLGVLGFFIIAILASRNIHAAVLVSIIVTTLLG
                     WIMGDVHYNGIVSAPPSVTSVVGHVDLAGSFNLGLAGVIFSFMLVNLFDSSGTLIGVT
                     DKAGLADEKGKFPRMKQALFVDSISSVTGAFVGTSSVTAYIESSSGVSVGGRTGLTAV
                     VVGILFLLVIFLSPLAGMVPPYAAAGALIYVGVLMTSSLARVNWQDLTESVPAFITAV
                     MMPFSFSITEGIALGFISYCVMKIGTGRLRDLSPCVVIVALLFVLKIVFIDAH"
     gene            34905..35570
                     /gene="yieH"
                     /locus_tag="OQP62_000232"
     CDS             34905..35570
                     /gene="yieH"
                     /locus_tag="OQP62_000232"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconate phosphatase"
                     /protein_id="HCS1719881.1"
                     /translation="MSQIEAVFFDCDGTLVDSEVICSRAYVTMFRQFGITLELTEVFR
                     RFKGVKLYEIIDTISKEHGVALAKAELEPVYRAEVARLFDTELEAIAGTNTLLESIKT
                     PMCVVSNGPVSKMQHSLGKLGMLHHFPDLLFSGYDIQRWKPDPALMLHAANAMKVNVE
                     KCILVDDSSAGAQSGIAAGMEVFYFCADPHNKPIDHPNVTTFTDLAQLPGLWKARGWK
                     ITR"
     gene            complement(35665..36390)
                     /gene="phoU"
                     /locus_tag="OQP62_000233"
     CDS             complement(35665..36390)
                     /gene="phoU"
                     /locus_tag="OQP62_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HCS1719882.1"
                     /translation="MDSLNLNKHISGQFNAELESIRTQVMTMGGMVEQQLSDAITAMH
                     NQDSELAKRVVEGDHQVNMMEVAIDEACVRIIAKRQPTASDLRLVMAIIKTIAELERI
                     GDVADKICRTALEKFSQQHQPLLVSLESLGRHTVQMLHDVLDAFARMDLDEAVRIYRE
                     DKKVDQEYEGIVRQLMTYMMEDSRTIPSVLTALFCARSIERIGDRCQNICEYIFYFVK
                     GQDFRHVGGDELDKLLAGKDPKE"
     gene            complement(36405..37178)
                     /gene="pstB"
                     /locus_tag="OQP62_000234"
     CDS             complement(36405..37178)
                     /gene="pstB"
                     /locus_tag="OQP62_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000063125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HCS1719883.1"
                     /translation="MSMVETAPSKIQVRDLNFYYGKFHALKNINLDIAKNQVTAFIGP
                     SGCGKSTLLRTFNKMYSLYPEQRAEGEILLDGDNILTNTQDIALLRAKVGMVFQKPTP
                     FPMSIYDNIAFGVRLFEKLSRADMDERVQWALTKAALWNETKDKLHQSGYSLSGGQQQ
                     RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARC
                     SDHTAFMYLGELIEFSNTDDLFTKPAKKQTEDYITGRYG"
     gene            complement(37265..38155)
                     /gene="pstA"
                     /locus_tag="OQP62_000235"
     CDS             complement(37265..38155)
                     /gene="pstA"
                     /locus_tag="OQP62_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HCS1719884.1"
                     /translation="MATLDMQNTAQLAEFRRKMQARRRMKNRIALTLSMATMAFGLFW
                     LIWILMSTITRGIDGMSLALFTEMTPPPNTAGGGLANALAGSGLLILWATVLGTPLGI
                     MAGIYLAEYGRKSWLAEIIRFINDILLSAPSIVVGLFVYTIVVAQMQHFSGWAGVIAL
                     ALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASISGIMTGILLAI
                     ARIAGETAPLLFTALSNQFWSTDMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLIIT
                     LCVLLLNILARVVFAKKKHG"
     gene            complement(38155..39114)
                     /gene="pstC"
                     /locus_tag="OQP62_000236"
     CDS             complement(38155..39114)
                     /gene="pstC"
                     /locus_tag="OQP62_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008806729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstC"
                     /protein_id="HCS1719885.1"
                     /translation="MAATKPAFNPPGKKGDMIFSALVKLAALIVLLMLGGIIVSLIIS
                     SWPSIQKFGFSFLWTKEWDAPNDIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTE
                     LAPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFATYFQEPVGNILSNIPFVGAL
                     FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRI
                     VLPFTKNGVIGGIMLGLGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFA
                     EAESGLHVAALMELGLILFVITFIVLAASKFMIMRLAKNEGAR"
     gene            complement(39250..40290)
                     /gene="pstS"
                     /locus_tag="OQP62_000237"
     CDS             complement(39250..40290)
                     /gene="pstS"
                     /locus_tag="OQP62_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HCS1719886.1"
                     /translation="MKVMRTTVATVVAATLSMSAFSAFAAASLTGAGATFPAPVYAKW
                     ADTYQKETGNKVNYQGIGSSGGVKQITANTVDFGASDAPLSDEKLNQEGLFQFPTVIG
                     GVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAITKLNPGVKLPSQNIAVVRR
                     ADGSGTSFVFTSYLAKVNDEWKSKVGAGSTVNWPTGLGGKGNDGIAAFVQRLPGAIGY
                     VEYAYAKQNNLAYTKLVSADGKPVSPTEESFSNAAKGADWSKTFAQDLTNQKGDDVWP
                     ITSTTFILVHKAQKKPEQGAEVLKFFDWAYKNGAKQANDLDYASLPDNVVDQVRTAWK
                     TSIKDSNGKALY"
     gene            complement(40456..41829)
                     /locus_tag="OQP62_000238"
     CDS             complement(40456..41829)
                     /locus_tag="OQP62_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HCS1719887.1"
                     /translation="MTKKIVAVTACPTGVAHAFMAAEALEIEARKRGDWIKVETRGSV
                     GAKNTLTAEEIAQADVVIIAADIELDLSGFVGKRLYRTSTGAALKKSAQEMDNAFNSA
                     EVYQGSAGRSSSAGKTELPGVYKHLMTGVSHMLPLVVAGGLCIALSFVFGIQAFNEPG
                     TLAAALFQIGGKAAFALMVPVLAGFIAFSIADRPGLAPGLIGGMLASLCGAGFLGGIV
                     AGFLAGYSVRFLAQNIKLPASMEALKPVLVLPLLSTLITGLIMIYVVGGPVSAVMEGL
                     TTFLGNMTSTNAILLGMLLGAMQGFDLGGPVNKAAYTFGVGLLASHSYMPMAAIMAAG
                     MVPALGMGVATWAARAKFTASEHEAGNASFILGLCFISEGAIPFAARDPMRVIPSTMV
                     GGAIAGGLSMYFGCTLMAPHGGLFVLAIPHAVEHVMQYLLSIALGTIVCGLMYALLKP
                     SAVAQTV"
     gene            complement(41878..42648)
                     /locus_tag="OQP62_000239"
     CDS             complement(41878..42648)
                     /locus_tag="OQP62_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate 5-dehydrogenase"
                     /protein_id="HCS1719888.1"
                     /translation="MTKRINKDTQVCMSLAARPSNFGTRFHNYLYEALDLNYLYKAFS
                     PTDLTQAISGVRGLGIRGCAISMPFKEACIPLVDELDASAKAYNTDYIAIARLLANYK
                     VSPDQVFALRGSGGMAKAVACALKDAGFTRGYIVAIDEASGKQLAELYGYEWRPDTDG
                     IEADLLINATPIGMAGGNDADKLSYSEQEVDKASVIFDVVALPPVTPLIRYARERGKT
                     VIIGSEVFAIQAVEQFVLYTGIRPDDALFQKAAAWSRL"
     gene            42743..44500
                     /locus_tag="OQP62_000240"
     CDS             42743..44500
                     /locus_tag="OQP62_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgrR family transcriptional regulator"
                     /protein_id="HCS1719889.1"
                     /translation="MATRHTEQKYLKLLQHYGDKPVSVTLQELADVLFCTRRHMRNLL
                     LQMQEAKWLIWQSQAGRGHRARLHLRYKPEQLLSEKAEQLLESGHVDQAIQLLGKNKH
                     QVAQLLRSKLGYSVRADYQRLCIPYYRTMPSLCPGIPLRRSEQHLVRQIFSGLTRINE
                     EKGEVEADLAHHWRQIDPLRWRFYLRPAVLWHDGQELTIDAVIASLTRSAKLPLFSHL
                     QTIQATGPLSLEITLAHPDNRLPLLLSHIDAMILPPDHTQRADFPAHPVGTGPYEVVE
                     NNGFHLQMKAFDHYFGLRGLLDEVEVFIWPNLTETDNLAESLSDNDTAAWLSSSLSDE
                     DYVSGRLSQVSGKPSDNLREMFLERGGYFLLCDSRSPHWHTAEHRRWLRETLSPYALL
                     QHLSEAIRPFWVPGGSLLSSWFHTIEAGPACSPFISSSPYAKLRLAYHDQHPEFPMLL
                     DIMQEIMRQQGILLEGVELNYDDWANGKTNVDLWLGTVNFPIPEEWNVGTWLLGSPLL
                     RHAISGGDDALLAQWETQWHAETISAEQLVRETTRSGWLQPLFHHWMRLKSPDRARGI
                     HLNNLGWFDFRSTWIEPGP"
     gene            complement(44531..45598)
                     /gene="stgD"
                     /locus_tag="OQP62_000241"
     CDS             complement(44531..45598)
                     /gene="stgD"
                     /locus_tag="OQP62_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001241930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein StgD"
                     /protein_id="HCS1719890.1"
                     /translation="MRLWTIILFSCFMVLISPVCRAGDGICHAVKGTYIYNLNLNDAR
                     IPAEKNKAGTEVRDLETLTSSESYKVGCSCLTHFSSTFREVYYTARSPLSIDTTRNGY
                     TYYTLNDNLSIATSIAVLGRGFIAVPFEAEPNVVKDGMNCYTDTVEGNLATLYTGSEV
                     KVSFLINKPFVGQVAIPGTIVANLYGGLDASSSTASTDKLAEVRIVGDIVAPQSCEID
                     SGQVIEVNFGKIPVADFSTTQGTAAAGHKVTKTVQVKCTGMLDENIVYSTFNADPVDS
                     SANMMKVLGNDDVGIMIYDKWDRMVKVTGGKMDMDMGVNNGGAETNSLTFSAAPASAT
                     GARPQPGTFEAYATITLEITN"
     gene            complement(45610..48144)
                     /locus_tag="OQP62_000242"
                     /pseudo
     CDS             complement(45610..48144)
                     /locus_tag="OQP62_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000258936.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
     gene            complement(48166..48864)
                     /locus_tag="OQP62_000243"
     CDS             complement(48166..48864)
                     /locus_tag="OQP62_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HCS1719891.1"
                     /translation="MSLSMFARGIKIVILALLCLNLPSAFAGIVVGGTRVIFHGNDPD
                     STISIYNKEVDLPYLIQVWVDPFSKDDKSKPPFTVIPPVSRLEPSQEKVLRIIKTAGE
                     LPKDRESVFWFNVKNIPPSSKNKDSSTLEIAIKTRIKLFWRPASITLIPEKAVAKVKW
                     YRQGSKLVVENNSPIHMNIMDVSVDGKDVPLNMIKPFEKLTLDLPTGVTGHALAWRFI
                     NDYGAISSPVKQAL"
     gene            complement(48962..49510)
                     /locus_tag="OQP62_000244"
     CDS             complement(48962..49510)
                     /locus_tag="OQP62_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1719892.1"
                     /translation="MVLSSTMLVGNAMASDGTVHFLGEVVDSTCQVTPQTADQNVNLG
                     KVNKTAFAGVGSTAAPTEFHIDLTGCPATYTKAAVRFDGTEASNSDGDLAIGNPANGD
                     APGDYTGDGAAITASGVAIRIYNRADNSQVKLYNDSAYSTIDTTAGTASMEFIARYIA
                     TDATVTAGTANADSQFTVEYQK"
BASE COUNT        11626 a        13566 c        12847 g        11473 t
ORIGIN      
        1 attgtcattg cgcatattca ggttgatatg gcgtataaac accggtcagg ctttccagga
       61 aggcgacgat atcgtcaata tcgttttgcg gcagatcggt gccaacctgg taacgcagca
      121 tcagttttac cgcgccatcc agcgtcggta cgtcgccccg atggaaataa ggcgctgtta
      181 acgcgacgtt gcgtaagcct gggacttttt gccgtaattt atcgcgaacc tctttggtga
      241 cgttcatacg accaatatcc gctgcggtaa tttcgccaaa attaaagtct cgctttaatc
      301 ccaatggttc aaaagagcgc ccgcctaaaa tgataccgcc gtgacaggtt gcacatttat
      361 tttctttaaa taattgataa ccgtgtttct gttgcgcggt cagcgcattt tcatctccac
      421 gtagccattt atcaaaagcg gaatccggcg ttatcaacgt tttttcgaat tcggcgatcg
      481 catcagtaat attttccccg gtaaatcctt gcggataaac cgcctggaaa tcttttttca
      541 ggacagggtc tttatcaagc ttgctaataa tttcatccca ggatttagag gccatttcaa
      601 taggatttaa cggcggtccg cctgcttgct cctgcagggt tgcagcacga ccatcccaaa
      661 attgttcgat attaaatacg gagttgaata ccgtcggcgc atttattggc cctaccgcac
      721 cgccaacgcc aattgaggtt tttctgccat cgacaccgcc cgcatttaac gcgtgacaat
      781 gcgcacagga tattgtgctg tcgccggata aacgttcatc atgataaagt cggaaaccta
      841 agtcgacttt tttcgcatcg acgggaatat tgcgcggaat aggctgaacg ggttcattcc
      901 ggtgtgcggg gtcggtatcg gcgctggcat agttgcgctc acgctgatcg gctatccagt
      961 tcaggatgtc agtacgctct ttatcgctga cgccccccgc ccagtgcagc gcgacatagc
     1021 gggttggtgg catagtctga tgttgcataa cccattcaat tttattcagt tcgctttgcg
     1081 gcaccggcgt atccgcaatc agggcggccc gtaccgcctc caggttaaac gacttgtagc
     1141 cgagctggat atcgtaatcc attagctgct ttgccaccgg aaaagaggaa taaaaaggca
     1201 attcagcgga aggcgtatga caataatcac atcctttctc cctgaaataa cccagtattt
     1261 tattattttc acccacaacc gaggcctgca catcgctttt tttactgcgc tgtttgtcgt
     1321 aataccatac atacccggac aaacctaaat aacataacag cccaacggtg ataaccgttg
     1381 tcgcatagag ggtaattttt ttcatatcac tatccttatg gggtattgcg gcataattaa
     1441 ttaaatttta tttttttact catgaggccc gtcaatacta aatacaaacc catcatggat
     1501 attgattggt atcaataatt acaattggct aaacctatag atatgataac ccccgactat
     1561 cgtaagattt attttgcgat gcccgtcaca gggtttattc aaccgcaaca atggataaat
     1621 cctcttttcc gtcatcaaaa cgaacgatag ccaacaataa ttgacttaac gcagcataaa
     1681 aaccataggg atcatgctta aggcaattat ttgtaaattc cggaagccac tccagtaatg
     1741 acgataatgt tttctggcgt aatttattca ttctccgttg ttggaacgat tcacccaatg
     1801 aaaaatgtaa atggctgagt aattccagat aaatcgccaa gtggtcggcc ggctctttaa
     1861 aatcgtcgtt gacttccatc ccggcttcaa gcaataaatg tttaatcatg ccgggttcct
     1921 gctgcgggta ttgcgaggcg tagggcaagg ccgatttttt atccgtcatc aggaacaatc
     1981 cgcaaaaatc cgcggccagc tccagctgcg catcctgacg caggctaagc gcggcaattt
     2041 tttgttcgag taacgccacc gacgccgcca gcgctggctg acgctttaac agcgccagcc
     2101 agtccgcgat ttccgcggac tgtaattgta ttaacccttc atcatccact tcccggaaaa
     2161 agagtaacgc cagccatgca tatacgcagg cgtactgttc ctgagcaagc gctggctgct
     2221 taatcatgcg gattcccctg cgatgcgggt acatattcac actgcgcgac catctcggcc
     2281 ggaccgttaa acgccgtgac gttatccata ggaccggtat atttttcaat ttccaccagc
     2341 gtcgtatgcg cgctggtcgc ctgcgcgagc tgtgatgtac cggtatccag cgttaatacg
     2401 ttagggttgc cgtacttaca taacgcgttg agatcgccgc ctttatcagg atcgtaccag
     2461 gcaccttcat gaattcgcgc cacgcccggc gcatagcgat cggaaactac cgctcccgcc
     2521 agtacctgcc cgcgtgcatt gaatacccgc acgatgtcac cgttgcggat cccgcgcgcg
     2581 ctggcatcct gtgggttaat aaagaccggc tccttgccgc caacggcata ttgctgacgc
     2641 agcgtttccg actcgcacag ttgggaatgc agacggaaat cagggtggac ggactgtaag
     2701 tgcagcggcc agcgctgcga tcccggcccg ccatgcgagc gttcgatttt ttcgaaccac
     2761 atgggatggc cctgacaatc gtcgtattgc atgtcggcga tcgttttgga gtaaatctcg
     2821 atcaaaccgc ttggcgtgcc caacggctcc aggtccggat cttcacggaa agcctgatgg
     2881 cgcacaaaca tctgcggatg atcaaactcg atgtactcct gttgattcca gaacacctcg
     2941 aaagtcggta agtggatacc gcgacctttt ccctgctggc tcccttcctg ccagatgcgt
     3001 ttcagccagc ccatttcatc aagaccttcc gtgaatgccg cttcacggtt aaagcgtcgg
     3061 cagagatcgc ggaaaatatc aaagtcgtta cgcgcttcaa actgcggcga caccacctgt
     3121 ttcatggcga taatgccgcg gttagagtgg ttgccgaact gatcgaggtc gttacgctca
     3181 aattgggtgg tagccggcaa aacgatatcc gcaaagcggc aggtcgacgt ccactggtta
     3241 tcaatagcga tgaccgtttc cagcttgcgc cagccttcaa ttatgcggtt aatttgttgg
     3301 tgtcggtgga acgggttggt cccggcgaac acgcacatct tcagcggcgg taatttaacc
     3361 gatttcccgt tccagttaat gatcttgccc ggttcaagaa tggcatccat aaaacgcgca
     3421 ataggaatgg tgctgctgta gcctttgtaa tccgtgctgt cgtgcactgg cggaacggtc
     3481 gtcgaaccgg aaaagccgct taaaatgatc cctttacgac caggcgtccc ggcgccgtta
     3541 tagtgccagc caaaaccaaa gccgccgccc ggtaaaccaa tctgtcccag cattgccgcc
     3601 agcacgacga ccatccatga ccactgttcg ccatgctgca tacgttgtac gcaccagcca
     3661 gcgatgattt gcgttctgtc gcccgccatc tgccgcgcca acgcgcggat ggtgtcggcg
     3721 tcaataccgc acagtttttc cgcccaggcg gcatctttgg gctgtccatc tttctcgccc
     3781 agcaaatagg ggaggaactg gtcaaaaccg acgcagtagt tatcgaggaa atttttatcg
     3841 tacagtttct cgctgtacag ggtatgcgcc agcgccagtt gtaacgggac atccgtctgc
     3901 gggttaatgg cgatatgttt gaccttatcg cgccccagat aatcgtgcgt ggaggtgacg
     3961 accgggtcga tgctgatgac cgagatagcg ccgctggcaa ccttctcttt taattgttca
     4021 tagtactgat agacatcgtg atccgggcac caccagtttg cctgctggtt tttcaccata
     4081 tcagaacccc atagcacaat cgttttactg ttctgtaaaa ccagaggcca tgacgtttgc
     4141 tgctcgtaca cttccattga acccaccaca cgcggcagaa tcacctgcgc cgcgccggtc
     4201 gaatagtccc ctcccgtgct gacgctattg ccatgtagcg caatcgcgcg cgccagcatc
     4261 ccggaggcgt tatggaacat gccggtagat tgccaaccgc tcgccgtcag taacgcgctc
     4321 ggcccgtagg ttttttgcac ccgctccagt tcctgataga acagatccag cgcttcatcc
     4381 caggagacgc gcacaaaacg attatcgccg cgctgcgagg tgtcgctttg atgacctttg
     4441 cgcatccagt cgacgcgcac catcggatag cgaatacgcg ccgcgttgtg gacgtgatcg
     4501 ggcagaccgg cgatcatttt ggacgggtat ttatcctgtt caaacggttt tgccgccaca
     4561 aatcgaccgt caaccaccgt ggcgcgaatc gccccccagt gagaaccggt aaggataccc
     4621 tctttcgtcg cggcgcctgg cgcaacggca tccgctgcgc gggcgctacg gggcgtcagt
     4681 agtgacggcc ccagcattcc tgccaccgtc aagccgccaa gctgcgccag aaaacgtcga
     4741 cgagagacgt gtaacgagtc cttatttttc attgtgttct cccttatcgc tgtgcggcgt
     4801 gttggtggta tcagacgcat tcatctggag atatttcaac aaggtacgtt catcacgctt
     4861 atccagactg gtgaaaccga tcatgccgtt gagcgtgccg atccagccgt tagcgtcaaa
     4921 gtgcgctttg tccggcgcac cgtgacactg attacaggtg ccgttataga gggagtcggc
     4981 ataggcccaa atcggtttaa tgtcatttac catgtcacct ttttgcatcc acgcggttgc
     5041 ctgtaatttg ctccactgag tattggtcgc cgcgacggtg gtctcttcca gcgttttcac
     5101 atgctgttgc acatcgccgc gaatcgaggc gacaaaaata cgtttaccgg gcaactgcgt
     5161 cagcacgcgc tggcgaccgt ccgtctccgt ccagccttcg atttgcactt gcagccagtc
     5221 accgtcccgt ttaaggactt tcacttcaga agcaggcaac agcgaacctg ccggttcttt
     5281 atcgccttta gcggcgtaaa tcggcttgat atccagcgaa tagagcgtat cgccgtcatt
     5341 atgcgtactg gcgctggcgc gcagttcatc aaactgtttg cggaaaccgc tgctcatatc
     5401 cggtagctgg tgggcaatcc ctttatggca gtcgatgcag gattgatttt ctttcgcggc
     5461 gattttcatt tgccgcgccg cttccgggtt ctgtttcgcg tgatccatcg catcgtagtt
     5521 atggcaggaa cgacaggtcg cggagttatt ctctttcatg cgcgcccatt ctcgctcggc
     5581 aagctcggcg cgtttagctt caaatttttc cggggtatca atcgagtggg cgataaatgt
     5641 ctggtaaaga tcgttgctgg cttccagctt acgtttcacc atgcctggaa tatcgggggg
     5701 gatatggcaa tcgtggcatt ccgcgcgtac gccggaagcg ttctggaaat gtacggactg
     5761 tttatattcc tgatacaccg gctgcacact atggcagctg acgcaaaact ctgtcgtact
     5821 ggtcagtttg ataccgacgt gaggtaacac gatcagcgca acgccgatca caatcccgac
     5881 aatgaccagc gccagtatcg accaacgggt gcttggcctg agtaacgctc tccagagttt
     5941 tcgcataata gcccctgtaa ttatatggtt taatgcgcag atcttattcc gcaaatatga
     6001 acagcgtcac tggtcaggat gaacgggata cggcaatata tgaacagata tgaacagaaa
     6061 gagaccgcgc gcaggatgtc acatcacatt gttattgttg aggatgaacc tgttactcag
     6121 gccaggttac aggcctattt tgagcaggag gggtatcgcg tttcggtgac cgacagcggc
     6181 gcgggcctgc gcgtgacatc atggagcatg agcacgtttc gctgatcctg ctggatatca
     6241 acctccccga tgaaaacggg ttgatgctga ccagggcgct acgcgaacgc tccacggtgg
     6301 gcattattct ggtgacgggg cgttgcgacc aaatcgaccg catcgtcggg ctggagatgg
     6361 gcgcggacga ctacgtcacc aagccgctgg aactgcgcga gctggtagtg cgggtgaaaa
     6421 atcttttgtg gcgtatcgat ctggcccgcc ccacgccgca aaatgccagt gaaaactgct
     6481 atatgttttc cggctactgc ctgaacgtga tgaatcacac gctggagcac aacggtgaag
     6541 ccattaagct tacgcgcgcg gagtacgagc tgctgctggc ctttgtgacc aacccaggca
     6601 aagtgctgca tcgcgaacgt ctgctgcgaa tgctttccgc ccgccgcgta gagaccccgg
     6661 atctccgcac gattgatgtc ctggttcgcc gcttacgtca taaaattacg ccggaactgc
     6721 tggtcacaca gcatggcgaa ggctactttt tagcctcgga ggtgtattga tacagataga
     6781 cgggccgaaa tcccggaggc gatagcgaac ggcgaacgcg cgcgctgtcg gcgttgttat
     6841 gcgtcaaaat aagtaccggc gggctgatat tttcaggcac cggttgcccc tgtaagacct
     6901 taatcgactg cgttatcgct aattctccct gccaggccat ctgatcgctg agcgccatca
     6961 ggatatggcc gcgttttaaa ccgcgataaa cttgatgcgt cagataaaat gagacgatcg
     7021 tgagcggagt cgtcaaattt cgcccttcgc ccatcgccgc ctccgccgct atcgccgacc
     7081 cggcgaccac attggcgtcc ggatggcgtt ccagcatttc ctggagtaag tttcgctgca
     7141 cttcaatgtc gttatcgccc caggcgatat ccacaatgtt gatggcgctg cctttaattg
     7201 cctgacgaaa acccgccacc atctcctgac tgccgccggc ttcttccggc cccgggaaga
     7261 gtaaaacgtt aagcgttttt cctttgctcc actgcaccag gaaacgtccc ggcagataac
     7321 ccatctgaaa ccacggcaga ccaatgcggg ttgcgacgct ggcatcgtga atcatgttca
     7381 ccagttcaat aaccggcaca ttaccggcat atcgttccag ctccgggaaa cgatcggtac
     7441 tgctgccaag cagaatagcg tcggcgcccc actcccggca ctgcgtcatt tgctgttgtt
     7501 gcgtcgccag ttgccgatag ccattcgctt ccagcacttt taaatcaacg ccatacaatt
     7561 tggccgcttt ttgcatcccg tagttgacgg acaaccagta agaatctttc aggctggggt
     7621 ataatgcgca cagtttccag ggtttactcg cattgactga cgtttgccgc cagggaatcg
     7681 cccgatcggc gcgcgtccag tgtagcaacc cggtttcggc tgacgccgtt tctacattcg
     7741 agacgatgat tatcaaaaaa aagaacgaaa taagcgtgcg catgatagcc ccaccagcaa
     7801 caaggtttta tcctaatggt ttttccggcg gcaactcaac ccatttcacc cgcggcgcat
     7861 aaatgtcaac gccttcactg acccacagat tatggctggc cttcgctctg atggcggcac
     7921 tcaccctgct cagcaccgtg atcggctgga taagcctgcg cgtcattagt caggtggagc
     7981 aaaccaatac gcaagcgctg ctccccacga tgaatatggc caggcagtta agcgaagcca
     8041 gcgcttacga gctcttttcc gcgcaaaatc tgaccaatgc cgacagcgag ggcgtttggc
     8101 tggcgcaggg gaagatgctg aaagcgcaaa gccttaaaat taaccatctt ttgcaggcat
     8161 taagcgagca ggggtttaat acctcggcca tcgcccggca agaaaaagag attgcgcaaa
     8221 cgcttgggca gcagggaacg ctggtcggtg aaattctcac gctgcgcgca cagcaacagc
     8281 agttaagccg ccagattgcg gaggcggcgg aaagcattgc cgcccaggct cacggtcaag
     8341 ccaataatgc agcgacatct gcgggcgcca cccaggccgg tatttacgat cttatcgaaa
     8401 gcggtaaagg ggatcaggct gaacgcgcgc ttgaccgact gattgatatc gaccttgagt
     8461 atgtgaatca gatgaatgag ttgcgggtca atgccctgcg gtttaagcag ctcattgtga
     8521 ccttaaaaga cgcgcaaggg ctgagcgatg ccgaggaaac cgatgaaaaa cttaatcagt
     8581 tggttaaaat tttatcccgc cgccagcagc gtatagaaga tcctaccgtt cgcgcccaaa
     8641 tcgccgacgc gctggggaaa ataaaccagt acacgacact ggttaccctg tttcgtaagg
     8701 aaaacgccat ccgcgaccag cttcaaacgc ttatggccaa taacctcttt cagtttaccc
     8761 gcttcagtac ggaagtgtcg cagttggtga acgccatcga aaaacgaaac gaggctgggt
     8821 tagcgcgtct tacacacgcc agtcagcgtg ggcaaatagg gttagtgatc ttaggtatcc
     8881 tggcgctgtg ctcattaagt tttattcttt ggcgagtggt ttaccgttcc gtatcccgcc
     8941 cgctggcgca acaaacgcag gccttacagc ggctactgga gggcgatatt gactcgccgt
     9001 ttccggaggc ggctggcgtc agcgaactgg ataccatcag ccgtctgatg gaagcgtttc
     9061 gcgccaacgt gcgcaaattg aaccgccatc gtgaggattt ggcggaacag gtgcgatcgc
     9121 aaacggcgga gcttcatgcg ctggtgctgg aacaccggca ggcgcgcgcc gaagcggaaa
     9181 aggccaacga ggcgaaatcg acgttccttg ccgccatgag ccatgaaatt cgcacgccgc
     9241 tttacggcat tctcggtacg gtacaattgc tggccgataa accgctcatg gcaaactacc
     9301 gcgacgattt acaggccatt aatgattcag gcgaatcgct actggcgatt cttaacgata
     9361 ttcttgatta ctcggcgatt gaagtaggcg gcaccaacgt ttccattagc gaggaaccgt
     9421 ttgaaccgcg acaattgttg aatagcgcgc tgcatttaat gcacagccgc gtgcaggtgg
     9481 cgctcatcac cgactttagc gagcaactcc cttccacgct acaaggcgat ccgcgccgga
     9541 tacgtcaaat tgtgattaat cttttaagta atgcggcgaa atttaccgat cgcggcagca
     9601 tagtgctgcg cacgttttgc gacgatcaga gctggtttat tgaggttgaa gataccggat
     9661 gcggtatccc tgaagcgaag ctgacggcta ttttcaaacc gtttgtgcag gcgacaggat
     9721 gccggggcgg gacgggcctg gggctggcta tcagcgccag cctggcagag gcgatgggcg
     9781 ggacgctaac cgtcaccagt acgcttcatg ttggcagttg ttttcgctta caactgccgg
     9841 ttcgccaccc caaacctgca agcaaaagtg cgttcaggga accggtaaat cttaacggac
     9901 tacgcctgtt gctgattgaa gataatatgc tgacgcagcg tattaccgct gaaatgctca
     9961 cgggtaaagg ggtgaaggtc tcagtagctg aaagcgcgaa tgacgcgcta cgctgtttag
    10021 ccgaaggcga gccctttgat gtggcgctgg tggattttga tttaccggat tatgacggct
    10081 taaccctggc gcagcagttg atgagcctgt atcccgccat gaaacgcatt ggttttagcg
    10141 cgcatgtgat agacgataat cttcgtcagc gtaccgccgg tcttttctgc gggattattc
    10201 aaaagcccgt tccccgcgag gagctttacc gcatgatagc gcactattta cagggcaaat
    10261 ctcacaacgc gcgggtgatg ttgaatgaac atcagcttgc cggcgatatg gcgtctgtcg
    10321 gcccggaaaa gctccggcaa tgggtcgcct tattcaaaga cagcgcgctg cctttagtcg
    10381 aggagatcga ggcggcgcgc gccatgaatg acgacgttaa cattaagcgg ctggcgcata
    10441 aattaaaaag cggctgcgcc agcctgggga tgacgcaggc aaccgaagcc tgtcgggagc
    10501 tggaattgca accgcttagc gatatagata ttaaaactat cgtgacgcag ggagtgacgg
    10561 cgctcgacgc atggatagcc ggtcatcctt cgccatgatg atttccggct cgccaaacga
    10621 cgcgtttcac atcgccagtt atcaggacat aaaacagtac gccgagggta taagagggaa
    10681 atagcctacg gctaccgcct gtttaatgat tctgtgtttt ttcgtcctgt agccgtgcct
    10741 gctccgccag ggcggcaaaa tctttttcgc tgtaatagtg cgcgggaggc ggtagctgcg
    10801 ccatatcctc gctgggccac aattgtagct gcgccagcgt gctaagctgg ataccgcgcc
    10861 agcgatgggg caagctcagc ggcaatagcg acgttatctc gccaggaacc gcggtcggca
    10921 ggcggtcatc gcccatctga taattacgat gcagcaccag atatttttcc ggtacccgcc
    10981 gctggctgtt ccaccaacga ccatcaagca tatcaaactg aaaacgggtg atctgcgccg
    11041 gctgcgctgc cagctgcgtc agcgcttgcc gcagcgcagt ttccatcgcc gtgttgtaca
    11101 tctcttgcgt tttcgtctgg ccgtcgacaa ttaaagacgc cgccagacgg gcacccgcga
    11161 ggttagaata gagatcttcc ggcgaaaagg ccgatactcc ctcagaaaat ccgcgaacgg
    11221 actcgaaacc gtaccattgg gcgatttcgt gccactccgc cacctggaac gccagatgcg
    11281 ccgacagcca ggcggccagc gtgtaacgct cgcgtgcatc gaccggaggg gtaaaagcag
    11341 taaagaccag acgccgttcg gccagctcct cgcccagatt cagcgtaaaa gcctgcccca
    11401 gctttggtag tagttggctg aagatataca ctgtcatatc agcggtatcc cgcacatgtg
    11461 cggtgtcgat gaatccgcca cgcaaggtat acacaatacc gttattctca ccgctaaggc
    11521 cgatcaggtt tgccacgccc gagtacagat ggtcgttgta ctgatgatgc cccagcgagt
    11581 ctaccgtcac gacgttattt aactgataaa acggaaccgg cagtcccagc agctcggcat
    11641 gcaggtcgta accaaaagcg caacacggac gcaacccctt tggcagcggc tgtggcggca
    11701 tcgttggcca ggcttcactg gcagcaggca ttgggagcgt ggacagatag agcgtcagtg
    11761 gtaaggcggc gcgggcgctc cccgccagaa acagcagcgc cagaaagata acccgaacga
    11821 tagtcctcaa aatgcctctc ctacctgaaa ataaaaaccg ctgctgcctt tgcccacgcc
    11881 gtaatccagc cgcacgttga cgcgcggctt gaactcaaag cgatagccca cgcccgcaga
    11941 aggcagccat cgcccgtcat ccagatggtg caaagacgat cccatggtgc ccgctcccac
    12001 ccaaccgaca acgccatgcc gccagctcaa cttatggcga tattccagtt ggccactgac
    12061 ggcgttttta tcgcgatagc gcccttcata atagccgcgc atacgatggt tactgcccag
    12121 cagcggcagc atattccatg gcacgtagcc ctgggtaaag gcaccgtcag cttcccaggc
    12181 cagcacgtct ttatcatcaa cggcgtggta ttgactgtag tgcaactggt attcatcgaa
    12241 ccgcgtatcg ctaccgatgt ctggcgcgaa gtgggtatag cgaagggtgg catactgtcc
    12301 tttgcgtggg ttaggcataa aatcacggtc gtcccaacta atctcaacgc taccgccgtt
    12361 actcagtgaa gaaccgccct gcgctgtatg ttgaattctg ggcggatcgt cctcattgat
    12421 ttgcgcggcg tgctgtacat ccagcgtcca gccaacgcca agatagatat tgttgaccag
    12481 ccgacgatac agcatgggtt gcagatccag cacctgcgcg gtataggcct gcttatggct
    12541 gtctttatca ccggcggcaa aaccctgccc ccaatagtaa gtgggcgtgt cgctcaatgc
    12601 gccagtaagg aagaaacgcc agcgatcttg cgcgaaaaag gcgtaatttt gcaggcttac
    12661 gccgaaagcg cccgtggagc taaaatagcc gctcagcgac agcgtggata tctggctaac
    12721 cttatcggca ggatcggggc gatacatacc gacaatggcg gtgccgatgc ccagccccag
    12781 ttcaggggta taaaatggcc cgggcattac tccccagttg acgcctttgg cggcatcgta
    12841 agtatcgcta tcccccattt gttgtagcca gccgtccacc tgactgcggc tgggcagcgc
    12901 cgcctgcgcc acgccggaca gcacaccggc gacgcaaagc aactgtcggc aatggcagcg
    12961 gttcaaaagc gatactcacc ggccacaaag aagctgttgc gctcggcaaa gccaaactcg
    13021 gtggtaacgt tgaaatggcg ggttatttca tactgagcgc ccagcagcat gttccacggt
    13081 gattgcagat gctgtttgac gtcaaagcgg ccgttattgt tatagttagc catactcacc
    13141 agcctttgta gcgtcgctga tggcatggtc aggtcgtcga ggctgccttt aaactcctgc
    13201 tgcacatcct gatacatgct gccgacccag acgtttagct tgcccgacgg cagatgcatc
    13261 ttatctatac ccggggtggt aaaacggtaa ccaacgcgag gtgagacggt aaaggcgtcg
    13321 atgctgccat caagaatatc gaactgtgtc tgggtgtagt tagcatcaac agcggtaaac
    13381 cagttaccta cgccgccgac cagcgtggtg ccgataccat aggtagtgcc tttaaagtcg
    13441 agtttaaact tgaggttttg cagatcggcg ggatgaaaaa cgtggccatt tttcgtcatc
    13501 aacccaacac caatttgcga aacggaatga ccatcggtat agcccaccag gccgtacaca
    13561 ttcataaatg gcagcagcca ggcatccagc ttgaccgttt cggtcttgct cttttcacgg
    13621 gtatgaccga cgttaatttt aaacgcgtta tctaatggaa ttcccccgtt gggacctaaa
    13681 gccaggccat taaagttgat gctatcaacg ttaatattct gcccaatatt catgtagtta
    13741 atattgaggc caaatggctc gggaagctca tagccacgct ttcgggcttc atcacccaga
    13801 aaaggcaaca ctgatgtact ggcaggcttt gccaccggcg ttgtcgcgac tggcggtgtg
    13861 gcagcagatg ggacgtcatc ctgatagcta taaaccggcg acaggttcgc cggggggctg
    13921 gtagccgccc aggtagaaaa agccatagcg ggcagcgcca acagcaaaag ggagcgtttt
    13981 ttcataatga tgaagcgttt attctggcga gaagcgccgc cggatcgaaa ggaggaggga
    14041 gaatatagta atcgtcgcct ggtgggcggg atttctgtgc gaattaatct tttgaaataa
    14101 aaaactattt tctacaacgt ctttgttgca acacattagc ttcatgagtg gaactatcgg
    14161 cccgacggcg atcgggccgg agtgaatcag gacagaacat gttgttcaat cgcccaggca
    14221 acaccatctt caaggttcga tttagtcaca aagttagcca cctctttgac cgacggaatg
    14281 gcgttgtcca ttgccacgcc cataccggcg tattcgatca tcgcaatgtc gttttcctga
    14341 tcgccaatcg ccatcacctc ctctggctta atacccagcg cctcggccag tgattttacg
    14401 ccggtgcctt tattaacccg tttatcgagg atttcaagga agtacggcgc acttttcagc
    14461 acggtatact tttccttcac ctctgccggt atacgcgcaa tcgctcggtc gagaacggca
    14521 ggctcatcga tcatcataac tttcaggaac tgagtgttcg ggtccatctt ctccgcttca
    14581 caaaatacca gcggaatggt cgccacatac gactcatgca ccgtgtagta gctgatatcg
    14641 cggttagcgg tataaagcgt atttcgatct aatgcgtgga agtgagaacc cacctcacgg
    14701 gatagttttt ccagataacg gtagtcatca tagctgagcg ctgtttgcgc taccgtactg
    14761 ccatcccctg ctttctgcac cagcgccccg ttgtaggtga tgcagtagtc gccgggttgt
    14821 tccatatgaa gttctttcag atagctgtgc acacccgcat acggacggcc tgtggtcagc
    14881 accacgttta cccctttttc acgcgcagcg gcaatggcgt ttttaaccgc cggagaaatg
    14941 gtgtgatcgg gcagcaaaag ggtgccatcc atgtcgatag caatgagttt aatagccatg
    15001 aaatccccgc attaaatgag tcctgactca tgctaacgcg attccgctca aaaaacagca
    15061 aaagagtcag ggataaacgg ggctaaagaa taagacaaac cttcctcttt tgctcagtac
    15121 agaaggcgag ttttgtgcag tgaatactca catttattag ataacctcat taatcaaaca
    15181 gaaaataccg tttttctaat ctcatcgata ttgttaccct ggtcatgaat caccctattg
    15241 taaaaataaa caaaaatgat gttaatttaa ttaaaggaga tcgccaaatg tcgatggccc
    15301 ttaccgcccc gcctggcagg aaaagatttt taatcgttgc ctgtctgttt attggaatat
    15361 tcattgccta tctcgaccgc gttaatgttt cggtattagc cgcaaacgaa cccttcttag
    15421 cctatatggg tattgaaggc atgccattgc aaattggcat gatgatgacc gtttttcttg
    15481 ccgcttatgg tatcgctaat gttgtattat caccacttgg cgactacctt ggtccgagaa
    15541 aagcgatgat gctttgtatc ctaatctgga ccatcgcctt aattattggc ggagttgcga
    15601 catcgtttgc attaattatt atttgccgca tattactggg tatcggagag ggtttttatt
    15661 atccgctgca aagcgtattt attaaaaact ggtttccgaa gcaggagcgt ggccgggcaa
    15721 acgcagcgtg gatcgtcggc cagtcggtcg cgcccgccat tgcgatgcct tttttcacct
    15781 ggtggatagg cacccacggc tggcgttcca acttcttttt atgcgccgct ctcgggttaa
    15841 tcccactctg gctactttgg cgatatgttg ctgataaacc agaacaacat aaaagtatca
    15901 gcgagcagga actggcttat atcaaagccg ggcaggaaac ggaaagcgca agcagcagcg
    15961 aaagttttat gttgcgggta aaaccggtga ttaccaacta ttgctactgg ttgctggtgc
    16021 tgtggtacct gtgtctgcaa tgcctgtact gggggatgat tacctggctg ccaacctatc
    16081 ttaaatcagc cagaggattt agctgggcag aaatgggctg gctagcgtcg ctgccgtttg
    16141 tcttgtcgat attttccaaa gccgccgcgg gcgtcttcgt cgataaaata ggacgcagcg
    16201 cccccatatt aatggtgtta atgtttttcg ccggtatcag tatctatttc ggcacaataa
    16261 ccgaacacaa atatatgtca gcggtactac tctccttcgc cgtcgctttt tgcacgatgg
    16321 gtacgcctgt tgcgtggaca ttattacaag ggatggtgtc cgggaaatct atttccgccg
    16381 ccagcggcgt aatgaacggc gtcgcgaacg gcctgtcatc attatcacca gtatttatcg
    16441 gtttatttat ctctattaca ggaacctata ccggcggctt attatgtctg gttttcatca
    16501 gcgctatcgc cgtggtatct gcattcgttt taacgattaa aaaatattaa tcacaaggag
    16561 taaatgatga aaattaccag cattgatatt attgatgttg ctaatgattt tgcgtccgcc
    16621 accagcaaat ggcgtccggt ggtggtaaaa attaataccg acgagggcat ttccggtttt
    16681 ggcgaagtcg ggttggccta cggcgtcggc gcctccgcag gcatcggcat ggcaaaagat
    16741 ttagccgcca ttatcatcgg catggacccg atgaataacg aagccatctg ggaaaagatg
    16801 ctcaaaaaga cgttctgggg acaaggcggc ggcggcatct tttccgcagc aatgagcggt
    16861 atcgatatcg cgctgtggga tatcaaaggc aaagcgtggg gcgtgccgct gtataaaatg
    16921 cttggcggca aaagccgcga gaaaatcaga acctacgcca gtcagttaca gtttggttgg
    16981 ggggacggca gcgataaaga tatgctgacc gagccggagc agtatgcaca ggcggcgctg
    17041 accgccgtca gcgaaggcta tgacgcgata aaagtggata ccgtcgcaat ggatcgccac
    17101 ggcaactgga accagcaaaa cctcaacggg cctctcaccg ataaaatcct gcgtctgggc
    17161 tacgaccgta tggccgccat tcgcgatgca gtcggcccgg acgtggatat catcgccgaa
    17221 atgcatgcct ttacggatac cacctcggcg attcagtttg gccgcatgat agaagagctg
    17281 ggcatcttct actacgagga accggtcatg ccgttaaacc ccggacaaat gaaacaagtg
    17341 gctgataaaa ttaatattcc actggcggct ggcgaacgca tttactggcg ctggggatac
    17401 cgtcctttcc tggaaaacgg cagcctgagc gtgatccagc ccgatatttg tacctgcggc
    17461 ggcatcaccg aagtgaagaa aatctgcgat atggcgcatg tttatgacaa aacggtgcaa
    17521 atccacgttt gcggcgggcc gatttccaca gcagtggcgc tgcatatgga aaccgcaatc
    17581 cctaacttcg tcatccacga actgcaccgg tatgcgctgc tggagccgaa tacacagacc
    17641 tgtaaataca actacctgcc gaagaacggc atgtacgaag tctcggagct tcccggcatc
    17701 ggccaggaac tgaccgaaga aaccatgaaa aaatcaccaa ccatcaccgt aaaataagcc
    17761 aactgtctgc ctgcgccgca ggcagacacc ctgtatttgc gagtcgtatc aacgcgacct
    17821 tatccagcct gagataaaat cctctcagta aaggggtaac acaggtggca aatgaattta
    17881 actatccggc aatttcgcgc gtttctggcc gtcgcggatt tgcgtagttt taccgccgcc
    17941 agcaaatatc tgtgcatcac gcagggagct gttagcggtt taatcaacga aatggaaagc
    18001 cagatggagg tttccctttt cgaccgcact tcgcgcgtgg tgaagctatc gcccgacggc
    18061 gaaaagtttt tacccgccgc catgcgggtt gttgaagagt ttcaacgggc cgaaaattat
    18121 gcccgcgacc tgaaagagat caaaaaatcc ctggtgcggg tggtcggcgc gccgctgatc
    18181 gcctgtgctt ttctgccgca aatcatccat gcctttaagc ggcagcatcc gcatacccac
    18241 gtacagctta ttgataagcc catgtcgcaa ttacaaaaaa gcattatgtt gggagaagcc
    18301 gattttggta tcggcccgga gcggccgctg gaaccggaaa tcgacaaaca aacgctgttc
    18361 acaacggaaa tcgccctgta ctgccatccg gactatcggc tgcataaaaa aacggtgcgc
    18421 tgggaagaga ttcagagcga agagctgatc gccgttggca acgaatccgt tccgatgatc
    18481 tccgcgaccg ctggcgtgcg cattaagccc aaaatgacgg tggaacatat ggcgaccgcc
    18541 atgtcgctgg cggcgcagtg tgaaggcgtg gtgatcgccg aaaccttttc ccgccattac
    18601 gccaaaagct atcaattagc gacctgttcg ctcacgcctc cgctgcggcg caatatgaac
    18661 ctttatttcc atgcgtggcg cgcgcaaacg cccgccacgc agcgctttaa agagtttcta
    18721 ttcagatata tggatgaaca tcatgatgcc ctggccagcc agcggcgggc cggggattaa
    18781 ggcaggttaa atatcgatgt tcgccgcttt cagggcgttc tcctcgataa aggcacgacg
    18841 cggctcaacg gcatcaccca tcagcgtagt gaacagctgg tcggcagcaa ttgcatcttt
    18901 gacggtcacg cgcagcatac ggcggctttc cgggtccatg gtggtttccc acagctgatc
    18961 cgggttcatt tcacccagac ctttataacg ctggatagcc agaccgcgac gtgattcttt
    19021 caccagccac tccagcgcct gctcgaagct ggttaccggc tggcgacgct cgccgcgttc
    19081 gatgaacgcg tcctcttcaa tcagaccgcg cagcttctcg cccagcgtgc agatacgacg
    19141 atattccgcg ccggtcacaa actcgtgatc caacggataa tcggtatcca cgccatgcgt
    19201 acgcacgcga acgatcggct cgaacagatt ctgttccgta ttagtatgaa catcgaactt
    19261 ccactgactg ccgtgctgct ctttctcatt cagctcggta atcagcgcat tcacccaacg
    19321 cgttacagtc tgctcatcag aaagatcggc ttcggtcaga gttggctgat acaccagctc
    19381 tttgagcagc gctttcggga agcgacgctc catacgacca atcattttct gcgtggcgtt
    19441 atattcagag accagttttt ctaacgcttc gccggatagc gctggcgcat gagcgttcgc
    19501 gtgcagagtc gcaccgtcaa gcgcgatgga aatctggtac tgatccatcg cttcgtcgtc
    19561 tttgatgtac tgttcctgct tgcctttctt cactttgtac agcggcggct gggcaatgta
    19621 aacgtggccg cgctcgacga tttccggcat ctgacgatag aagaaggtca acagcagcgt
    19681 acggatgtgc gagccgtcga cgtccgcatc ggtcatgatg atgatgctgt gatagcgcag
    19741 cttgtccggg ttgtactcgt cgcgaccgat accgcagccc agcgcggtga tcagcgtcgc
    19801 cacttcctgg gaggaaagca tcttgtcgaa gcgcgctttc tcgacgttaa ggattttacc
    19861 tttcagcggc agaatcgcct ggttcttgcg gttacgcccc tgcttcgcag agccgcccgc
    19921 ggagtcccct tccaccaggt acagttcgga cagcgccggg tcgcgttcct gacaatccgc
    19981 cagtttgccc ggcagaccgg ctaaatccag cgcgccttta cgacgggtca tttcacgggc
    20041 gcgacgcgcc gcttcacgcg cacgcgcggc gtcgataatt ttgccgacga cgattttcgc
    20101 gtcagatggg ttttccagca ggtattcgct cagcagttcg ttcatctgct gttctaccgc
    20161 cgatttcacc tcggaagaga ccagcttatc tttggtctgt gaggagaatt tcgggtccgg
    20221 cacttttacg gaaaccaccg caatcagacc ttcacgggca tcgtcgccgg tggcgctgac
    20281 tttggctttt ttgctgtagc cttctttgtc catgtaggcg ttcagcgtgc gggtcatcgc
    20341 cgcacggaag cctgccaggt gagtaccgcc gtcgcgctgc ggaatgttgt tggtaaagca
    20401 gtagatgttt tcctggaaac catcgttcca ctgcagcgct acttccacgc cgataccgtc
    20461 tttttcggtg gagaaataga agatattcgg gtggatcggc gttttattct tgttgagata
    20521 ttcaacaaac gccttgatgc cgccttcgta gtggaaatga tcttctttgc catcgcgctt
    20581 gtcgcgcagg cggatggaaa cgcctgagtt caggaatgac agttcacgca ggcgtttcgc
    20641 caggatctca tattcaaatt cagtgacgtt agtgaaggtt tcgtggctcg gccagaaacg
    20701 taccatcgtg ccggttttat cggtatcgcc agtgacggcc aggggtgcct gcggcacgcc
    20761 gtgctcgtag atctgacggt gaattttgcc atctcgctgg ataaccagct ccagtttttg
    20821 cgacagagcg ttgactaccg agacgcccac cccgtgcaga ccaccggaga ctttatagga
    20881 gttatcgtca aatttaccgc ccgcgtgcag aacggtcatg atcacttccg ccgccgagac
    20941 gccttcttcc ggatgaatcc cggtcggaat gccacggcca tcatccgtta cggacacgga
    21001 gttatcggcg tgaatagtca cgacgatatc tttacagtga cccgcgagcg cttcgtcgat
    21061 agcgttatct accacctcga ataccatgtg gtgcagaccg gtgccgtcat ccgtgtcgcc
    21121 gatatacata cccgggcgct tacgcaccgc atccagccct ttcaggactt tgatactgga
    21181 ggagtcataa gaattcgaca tcaacgtttc tcgctcattt aatcttgggt taatccgtta
    21241 ttttaccctt ttccacggta aacatcttcg aattttcatc cgacatgtct ataacgtgtt
    21301 cagcgctaat tgcgctgaca aagacctgcg attgcgtggc ttttaagcgg ctggccagca
    21361 gtccgcgacg cgcatcgtca agttcagagg caaaatcatc tatcaggtac aggcagcgcc
    21421 gcccgctttc gcgggtaagg aactcgccct gcgccagacg taaggcgcac atcaacaact
    21481 ttagctgacc gcgcgacagg gtatcttcca ccggcgcgcc gtcagcgcga atgcgaaagt
    21541 ccgctttatg cggcccgtgc gcggtgtagg tcaacatacg gtcacgctca aagcttcgct
    21601 ccagcacgtc cgcatagtct gtctctttct cccagccgcg ctggaaagag aacgtcaggg
    21661 aaaattcagg taaaaactgc tgacaggtat ccgccatgtc ctgtgcgata gcgctactgt
    21721 actccgcccg ccaggtacta atttgttccg ccaacggaat cagctcttta tcccacgggc
    21781 gcaattgctc ataacggctc acctggcgca gcgcggcgtt acgctgtttc agcaatcgtt
    21841 tcaggttgct ccaagcggtg aagaatccgg cttcgttgtg aaagcatccc cagtcaagga
    21901 acgctcttct gtatttgggg ccgccgttga gtaaagtaaa cccctccggc gtaatcaact
    21961 gcatcggcat taaatgcgcc agctccgcga tcttgtgacc gtcggtaccg tcgatacgga
    22021 ctttgctgtc gccctgctta tctttggtta agccaatcga cgtctcacgc tcttcgccct
    22081 gcaggcgccc gtgaagaaca aacgcttcct gctcatgacg aatcacgcgg ccaggctgca
    22141 aactgcgaaa cgcccgaccg tggccaagcg tataaatagc ttccagcacg ctggttttgc
    22201 cgctaccgtt ggcgccaacc aggaaattaa agccggggga taaagcgaga tccgcatttt
    22261 ctatgttgcg gaagtctttg attagcagtc tggatagcga catatcaact cataaccagg
    22321 gcgttatcgg cgcagttagt ctggttacgg ccagcgcaca gcaaccggag cgtactggag
    22381 tacgtgagga ttgctcgctg cgctcgccct tcgggccgtc cataagacgt ccaaaatact
    22441 tcgtattttg tgcgagcact gcccggagcc agaataacaa gtaagatagc ccgatattct
    22501 ttacaagcgc attggcataa caacataggc agccgactgt gacgccgcat cctcaatctg
    22561 tacgctggat acggaatccg tcagcataat gcgcacggtt tcgcacttca gcgcattgag
    22621 cacgtccagc acgtaactga cgttaaagcc gatttccatc tccgtcccgc catagctcac
    22681 gtccagaatc tcttccgctt cttcctgttc cgggttattg gcggtgattt tgagctgatt
    22741 ctcactgacg tacagacgca cgccgcggaa tttctcattc gagaggattg ctgcgcgggc
    22801 aaacgcctgc ttgaggatat cgcagcccgc ttccagatgt ttatccggat tcttcggcaa
    22861 tacgcgacgg taatccggga aacgaccatc caccagcttc gaggtaaaga taaagtcgcc
    22921 gacgtgcgcg cggatattat tactgccgat ctgcacgcgc agcgggtttt cgccaccgtc
    22981 gagcatacgc atcagttcaa tcacgccttt acgcggcaca atcaccgagt ggctaggtaa
    23041 agacgcctcc agcggcattg agcacaccgc cagacggtgg ccgtcggtcg caacagtgcg
    23101 cagttcgcta ccttccgttt caaacagcat accgtttaag tagtagcgca catcctgatg
    23161 ggccatcgaa aactgggtcg cttcaatcag gcgcttcatc gtggcctgcg gcagcgtaaa
    23221 ttcaacttcg ctttgccagt cgtcaagatt cgggaaatcg gcggcaggca gcgtagacag
    23281 cgagaagcgg ctacggccag aacgcaccag catccgatcg ccttccaact gaacggcaat
    23341 ctccgcgccc tccggcaggc cgcggcagat atcaaagaat ttccgcgccg gcacggtagt
    23401 ggcgcctggc tcatgcggct gagaaagcgt aacgcgcgcg accatctcca tttcaagatc
    23461 ggtgccggtc agagaaagcg taccgtccgc tacctggagg agcaggttac cgagaatcgg
    23521 cagcgtagga cgaccgccca gcgggccgct gacctgctga agcggtttta ataaatgttc
    23581 acgttcaacg gtaaatttca taggatcacg acgacaatgt tctgattaaa ttcgaaaaat
    23641 cttctttgat atcgtggctt tcttcacgca gttgctcaat tttacgacag gcatgaagta
    23701 cggtagtgtg gtcgcgcccg ccaaacgcat cgccgatttc cggcagactg tggttggtga
    23761 gctcttttgc cagcgccata gccatctggc gcggacgtgc taccgagcga gatcgacgct
    23821 tagaaagcag atccgcaatt ttgattttgt aatactcggc caccgtcttc tgaatattgt
    23881 cgatggtgac cagtttttcc tgcaacgcca gtaaatcgcg cagcgcttcg cgcacaaagt
    23941 cgatagtaat cgcccggccg gtaaagttgg cattggcgat cacccggttc agcgcgcctt
    24001 ccagttcacg tacgttagag cgtagacgct tggcgataaa gaacgctact tcgcctggca
    24061 gacgaatatc attttcgtcc gcttttttca tcaggatcgc cacgcgggtt tccagctctg
    24121 gtggttcgat cgccactgtc agcccccaac caaagcggga cttgagacga tcctcaacgc
    24181 cgttgatctc tttcggatag cgatccgacg tcaaaatgat ctgctgattg ccttccagca
    24241 gagcgttaaa ggtgtggaaa aactcttcct gggatcgttc tttattggcg aagaattgaa
    24301 tatcgtcgat cagcaatgcg tcaacggagc ggtagtagcg tttaaactct tcgatggcgt
    24361 tattttgcag ggcttttacc atgtcctgca caaagcgctc ggagtgcata tacacgactt
    24421 tcgcgttggg tttgcgcgcc ataatgccgt tacccaccgc gtgcagcagg tgagttttac
    24481 ccagaccggt gccgccatag aggaataacg ggttataggc gccgccagga ttatccgcca
    24541 cctgacgtgc cgccgcgcgc gccagttggt tggatttacc ttcgacgaag ttatcaaatg
    24601 tatgcttaac attgacgttg gagcggtagg tcggctccgc cggcgctggt acgttatccc
    24661 agcccgaacg ggccgcgggc gctacgcgct gcggttgcgc cgtcgttgtc tgcgtaggcg
    24721 cgacaacgtt atgcacaggc gtttttagcg tttgcgtaac gggctttgtt cccacttcaa
    24781 aacgcagttg tggggcatcc gcgccgcaga atgtgttgag taatccattg atattgttga
    24841 ggtacttatc tcttacccaa tcgagcacaa aacggtttgg cgcatacaaa gccagcgtgt
    24901 tatcgctcag ttccgcctgc aacgggcgta tccacatact gaattctgtg gctggtaact
    24961 catcctgcaa tcgggcaaga cactgctgcc aaagcgaaag tgacacggcg gactccactc
    25021 gaacaaaagt cgataaatga caaaggctga tacattaatg attgttggcg cacgtcgata
    25081 agaccctgca tgaagggtga cgcactaacc gctgtctgcg gttttcacgg atctttcaaa
    25141 cgatcgcgac ttcacgcagt ctgaaagatt tcgtgttcat gcctgaccag gatcgtttga
    25201 aacgatcagg accgcggatc atagcctaaa ctgagcaaga gatcttctgt ttctcacaga
    25261 ttcttcccga tttatccaca gggctttcca ggaaaggata agtgtaatcg atccagggga
    25321 actcctgtac gctttcgcgc gcatattgaa aaaattaata tgtaaaggtg agcagacgcc
    25381 taaaagatcg cataaagatc cagggcgatc cttgcgcttt acctggcagt ccgtataatt
    25441 ctccacccgt cgcgcaatgc ccgtcatatg gcgtcaacgc tgcttatttt ccgcacaaaa
    25501 aggcgtggaa aatcgcggga aagtaaggaa agagaattga ctccggagtg tacaattatt
    25561 acaatccggc ctctttaatc acccacactg tggcgtaagt cgttcaaagt ttgttcgggt
    25621 atacgcaaaa gtcagtgaat ttattcaagt ttaggtagaa atcgccatga aacgcacttt
    25681 tcaaccgtct gtactgaagc gcaaccgttc tcacggcttc cgtgctcgta tggctactaa
    25741 aaatggtcgt caggttctgg cacgtcgtcg tgctaaaggc cgcgctcgtc tgaccgtttc
    25801 caagtaataa agctaacccc tgagtggtta agctcgcatt tcccagggag ttacgtttgt
    25861 taactcccgc tcatttcaca ttcgtcttcc agcaacctca acgggctggc acgccgcaaa
    25921 tcaccatcct cggccgcctg aattcgctgg ggcatccccg tatcggtctt accgtcgcca
    25981 agaaaaatgt tcgacgtgcg catgaacgca accggattaa acgtctgacg cgtgaaagct
    26041 tccgtctgcg ccagcatgaa cttcctgcaa tggatttcgt ggtggtggcg aaaaaagggg
    26101 ttgccgacct cgataaccgt gctctctcgg aagcgttgga aaaattatgg cgccgccact
    26161 gtcgcctggc tcgcgggtcc tgatagccct tattcgggtc tatcaacgcc tgatcagtcc
    26221 gctgcttggg ccgcattgtc gtttcacgcc aacgtgctca agctacggaa ttgaggcatt
    26281 gcgcaggttt ggagtgataa aaggcagttg gttgacggtg aaacgcgtat taaaatgcca
    26341 ccctttacac cctggtggtg acgatcccgt cccgcccgga ccatttgata ccagagaaca
    26401 ctaacgatgg attcgcaacg caatctttta gtcatcgctt tgctgttcgt gtctttcatg
    26461 atctggcaag cctgggagca ggataaaaat ccgcaacctc agactcaaca gaccatgcag
    26521 acaacgacca ccgcagcggg tagcgccgcc gaccagggcg taccagccag tggccagggg
    26581 aaaatgatta cggtgaaaac cgatgtgctt gatttgacta tcaacacccg tggtggtgat
    26641 gtcgagcagg ccttgctccc ggcttacccg aaagaactgg gttccaacga accgttccag
    26701 ctgctggaaa ccaccccgca gtttatctat caggcgcaaa gcggcctgac aggccgcgac
    26761 ggcccggata acccggcgaa cggcccgcgt ccgctgtaca acgtcgagaa agatgcgttt
    26821 gtactggccg acggtcagaa cgaactgcag gttccgatga cttatactga cgccgcaggc
    26881 aacacgttta ccaaaacgtt tgtctttaag cgtggcgatt atgcggttaa cgtgaactat
    26941 agcgtgcaga acaccggcga aaaaccgctg gaagtctcca cctttggtca gttaaaacaa
    27001 tccgtcaacc tgcctcctca tcgcgacacc ggcagtagca actttgcgtt gcatacgttc
    27061 cgcggcgcag cgtactccac gccggatgag aagtatgaga aatacaaatt cgacaccatt
    27121 gccgataacg aaaacctcaa cgtcagctcc aaaggcggtt gggtggcaat gttgcagcag
    27181 tatttcgcta ccgcatggat tccgcgtaac gacggcacca acaatttcta caccgccaat
    27241 ctgggtaacg gcattgtcgc tatcggctat aaagcgcagc cggtactggt acagccaggc
    27301 cagactggcg cgatgaccag caccctgtgg gtcggcccgg aaattcagga taaaatggcg
    27361 gctgttgcac cgcacctgga tttgaccgtg gactacggct ggttgtggtt catctctcag
    27421 ccgctgttca agttgctgaa gtggatccac agctttgtgg gcaactgggg cttctccatt
    27481 atcatcatta cctttatcgt tcgcggtatc atgtacccgc tgaccaaagc gcagtacacg
    27541 tcaatggcga agatgcgtat gctgcagccg aaaattcagg cgatgcgcga acgtcttggc
    27601 gatgataaac agcgccaaag ccaggagatg atggccctgt acaaagcgga gaaggttaac
    27661 ccgctgggcg gctgcttccc gctgatcatc cagatgccta tcttcctggc gttgtactac
    27721 atgctgatgg gttccattga actgcgtcat gcgccgttcg cgctgtggat tcatgacctg
    27781 tctgcacagg acccgtacta cattctgccg atcctgatgg gcgtaacgat gttcttcatt
    27841 cagaagatgt cgccgaccac cgtgaccgac ccgatgcagc agaagatcat gacctttatg
    27901 ccggtcatct ttacagtgtt cttcctgtgg ttcccgtcag gtctggtgct gtactatatc
    27961 gtcagcaacc tggtcaccat cattcagcag cagctgattt accgtggtct ggagaagcgt
    28021 ggcctgcata gccgcgagaa gaaaaaatcc tgattcggtg taggccggat aaggcgaagc
    28081 cgccatccgg caaggcgcgc cggtcagcct gatggcgcta acgcttatca ggcctacaat
    28141 caaaaggcgg tcatatgacc gccttttttt attgcaacaa agttgagact aaccatgagc
    28201 cataacgaca ctatcgtcgc ccaggcaacc ccaccgggac gcggtggcgt gggtatcctg
    28261 cgtatttccg gtctgaaggc gcgcgacgtt gcgcaagagg tgctgggcaa gctgccgaag
    28321 ccgcgctatg ccgactacct gccgtttaaa gatgttgacg gcagcgcgct ggatcagggt
    28381 attgcgctgt ggttccccgg cccgaactcc ttcaccggtg aagatgtgct ggagctacaa
    28441 gggcacggcg gtccggtgat tctggacctg ctgttaaaac gtatcctgac gcttccaggc
    28501 gtgcgaattg cccgaccggg cgagttctcc gagcgagcgt tcctcaacga taagctcgat
    28561 ttagcccagg cggaagccat tgccgacctg atcgatgcca gttccgaaca ggcggcgcgt
    28621 tcggcgctaa actcgttaca gggggcattt tccgcccgcg ttaaccacct tgtggaagca
    28681 cttactcacc tgcgaatcta cgtcgaagcg gctattgatt ttccggatga ggagatcgac
    28741 tttctctctg acggcaaaat cgaagcgcag ctcaatggcg tcatcgccga tcttgacgcc
    28801 gtgcgcaccg aagcgcgcca gggcagcctg ctgcgcgaag ggatgaaggt agtgattgcc
    28861 ggacgcccga atgccgggaa atccagcctg ctgaatgcgc tggcaggccg tgaagcggcc
    28921 attgtcaccg atatcgccgg taccacgcgc gacgtgttgc gcgagcacat ccacatcgac
    28981 gggatgccgc tgcatatcat cgataccgcc ggactgcgcg acgccaacga cgaagttgag
    29041 cgtatcggca tcgaacgcgc ctggcaggag attgaacagg ccgatcgagt gctgtttatg
    29101 gtggatggca ccacgacgga cgccgttgac cctgccgaca tctggccgga ctttatcgcc
    29161 cgtctgccca aaaatctacc gattaccgtg gtacgtaaca aggcggatat caccggcgaa
    29221 acgctgggta ttagtgaagt aaacggtcac tcactggttc gcctctcggc gcgtaccggc
    29281 gaaggcgtcg acgtgttgcg taaccacctc aagcagagca tggggtttga taccaatatg
    29341 gaaggcggct tcctggcccg ccgccgtcac ctgcaggcgc tggcggaagc cgctaaccat
    29401 cttgaacagg gcaaagcgca gctattaggc gcatgggcgg gggaactgct ggcggaagag
    29461 ttgcgcctgg cgcagcaaag cttaagcgag attaccggcg agtttacctc cgacgacctg
    29521 ctgggacgga ttttctccag cttctgtatc ggtaaataac gttgtgttgc ccggtggcgc
    29581 gatgcttacc gggcctacaa aacccgtaag ccggataagg cgtttacgcc gccatccggc
    29641 agcaatgatt tcccatgcgg aaatcactgt tgtccaaatg acaactcgtc tcgcgcaacg
    29701 tcgccccgta ttcttagcgc cacacttttc gtgaggccgc tatgaaacgt tttctactgt
    29761 gtagttttgc cctggtttta ctctatcctg ctggtattga tatgtatctg gtcggtttac
    29821 cgcgtatagc cgccgatctg aacgccagcg aggcgcagtt gcatatcgcc ttctccgttt
    29881 acctggccgg aatggcgacg gccatgctgt ttgccgggaa gatagccgac cagtcaggcc
    29941 gcaagccggt cgcgatcgtc ggcgcgatcg tctttatgat ggcctcactg ctttgttcac
    30001 gggcgtcgga aggctcgcta tttctgagtg ggcgttttct tcagggggta ggagcaggcg
    30061 gctgctatgt ggtggcgttc gccattctgc gcgacacgct cgacgagcat cgccgggcga
    30121 aagtgctgtc attattgaat gggattacct gtattgtgcc ggtactcgcc ccggtgatgg
    30181 ggcatttgat tatgcttcgt ttcccctggc aaagtctgtt ctatacgatg tccacgatgg
    30241 gcattatggt gggcctgtta tcactgttta tcctgcgcga gacgcgcccg gcaaggctgg
    30301 ctccacgcga tttatcacca tcgtcgtccg ccgccgagtc gctggttaac cgttttttcg
    30361 ttagtcgact agcgatcacc acccttagcg tgtcggtgat cctgaccttc gtcaatgcct
    30421 ctccagtgct gctgatggag gtgatgggat ttagccgtgg cgactatgcc attaccatgg
    30481 cgctcaccgc aggcgtcagc atggtcgtct ctttttctac cccttttgcg cttgggttat
    30541 ttaagccgcg aaccttaatg ctcgtctcac aggggctgtt tttgacggct ggcgtgacgt
    30601 taagccttgc tcataccaat accgtcacgc tctttggcct gacgcttatc tgcgccggat
    30661 tctcggttgg ttttggcgtc gcgatgagcc aggcgctggg gccgttttcg ctgcgcgccg
    30721 gagtggccag ttccacgctg ggtatcgctc aggtttgcgg ttcatcactg tggatttggc
    30781 tggcggcaat actcggtatc agcgcgatga atatgctgat cgggattctg attggttgta
    30841 gcatagtgag tattctgctg atcttctccg tcgcgcccaa caggtccgta gccgagcatg
    30901 aagaaatccc ttaccagtct cgatcttaat ctgctgttat gcctacagtt actcatgcag
    30961 gagcgcagcg tcactaaagc tgcaaaacgg atgaacgtaa cgccctctgc ggtcagcaaa
    31021 tcgctggcga aactccgggc atggtttgac gatccgctgt tcgtcaatac gccgctgggc
    31081 ctggcgccga cgccgctgat ggtcagtatg gagcaaagtc tggcggactg gatgcagatg
    31141 gggaatcaac tgcttgataa gccacatcat caaacgccgc gcggtttaaa atttgagttg
    31201 gcggcagagt cgccgctgat gatgattatg tttaattcac tgtcgcagca gatttatcag
    31261 cgctatccgc aggctaccat taaggttcgc aactgggatt atgactcgct ggaggcgatt
    31321 acgcgcggga aagtcgatat cggatttacc ggacgcgaaa gccatccccg ctcgcgagag
    31381 ttgatcagtc tgttgccgct cgcgattgac tttgaggtac tgtttagcga tttaccgtgg
    31441 gtctggctgc aggaagatca tccggcactg cgcgaagcgt gggatctgga cacttttctg
    31501 cgctacccgc atatcagtat ttgctgggag caaagcgata cctgggcgct ggatgatgtc
    31561 ctacaagaaa tgggacgcaa acgccatatc gcgttaagcc tgccggggtt cgagcagtcg
    31621 ctctttatgg ccgcccagcc gggtcacacc ctgatagcaa ccgcgccgcg ctattgccag
    31681 cactacaatc agctccacca gctaccgtta gtggcgcgcc ccctgccttt tgatgcgcaa
    31741 cagcgggaaa agctgatggt gccgtttacc ctattatggc acaaacgtaa tagtcataat
    31801 cccaagattg tgtggctacg acaggctatc aacacgctct gccgtcgcct tatctgacca
    31861 cctgcgttga taaattaacc ttactcttac cagaaatgtc accgtctgat taaagaacct
    31921 tctgaaattg aatttttagc gcgtaaaacc tgtccataat ttacgttaat gttactctcg
    31981 tcattatcac ggcccattaa tcacggagcg aaaaatggcg actcactttg ccagagggat
    32041 acttacggag ggacagttgg tttcaattcg tctctcttcg tcttgccata ttgaagccag
    32101 aaacctgcct gctcaccgac gaacgcgttt tctcgcctcc agaggccttc ttgccgaact
    32161 gatgtttatg ctgtacggaa ttagcgagct gccggaaatc attattcagg cgaaaggtaa
    32221 acccgcgttt cgtgacaaaa atctgccagg tttttctatc tcctacgccg gaaatatggt
    32281 tggcgtggcg ttgaccaccg aaggagagtg cgggctggat atggaattac agcgcacctc
    32341 ccgcggcttt caccatccgc attcgctcga acgccaccct ttctcccgta atgaaaactt
    32401 atgggtagcc aatcaaaacg atcccaacga agcgcgagcg caactcatta cattgcgcca
    32461 gagcgtgtta aaactcaccg gcgatgtcat gaatgacgat ccgcgggagc tgcaactttt
    32521 acccgttgcc ggacgcctga agtgcgcgca tgtcacgcag cttgaagccg tgtgcgatgc
    32581 ggaagatgtg ctggtatggt ccgtaaccgt tacgccagcg atagaaaaat taaaagtgtg
    32641 ggagttcgat ggcaaactgg gctggaaaag cctgcccgat atccagacgc gcgccaatga
    32701 gccaaccggc cgtctgatgc gattcgccca actccccgcc gccaaatcgt atacgcttaa
    32761 tcgttcataa tgaaaaaagg ggcacgtatg tctgaaatgc tgaatgtggt tacattgctg
    32821 ggaagtttac gcaaaggttc ctttaacggg atggtggcgc gtacgctgcc taaagtcgcg
    32881 ccggcaggaa tgacggtatc gccgctgcct tcaatcgggg atattccgct gtatgacgcc
    32941 gatatccagc aggaagaggg atttccagcc agcgtagagg cgctggcgga gcagattcgc
    33001 aacgccgacg gcgtcgtcat tgtgacgccg gaatataact attccgttcc cggcggcctg
    33061 aaaaatgcca tcgactggct atcccgtctg cctgagcagc cgctggcggg taagcccgtt
    33121 cttatccaga ccagctcaat gggagcgatt ggcggcgcgc gctgccagta tcatctgcgc
    33181 cagattctgg tgttccttga tgcgatggtg atgaataaac cggaatttat gggcggcgtg
    33241 attcagaata aagtcgaccc gcagactgga gaagtggtgg atcagggaac gttagatcat
    33301 ttgaccggtc agttgaccgc atttggcgag tatattcagc gcgttaaagc gtaagttagt
    33361 taaacaccct ccccccgatg gggcgagggt tcatttcatc agtgtgcgtc aataaacaca
    33421 atcttcagca cgaataacag cgcgacaatc actacgcacg ggctaaggtc gcgcaggcga
    33481 ccggtaccga ttttcatcac gcagtaagag ataaagccca gcgcgatacc ttcggtgatc
    33541 gagaagctaa acggcatcat taccgccgta ataaacgccg ggaccgattc ggttaaatcc
    33601 tgccagttta cccgcgccag gctggaggtc atcagcacgc cgacgtaaat caacgcgccc
    33661 gccgccgcgt aaggcggcac catgcccgcc agcggcgaca ggaagataac cagcaggaac
    33721 aaaataccga ctaccaccgc cgtcaaaccg gtgcgaccgc ccaccgaaac gccggaagac
    33781 gattcaatat aagcggtcac agaagaggtt ccgacaaatg cgccagtgac ggaagagata
    33841 ctatcaacaa acagcgcctg cttcatgcgc gggaatttgc ctttctcatc cgccaggccg
    33901 gctttatcgg tcacgccaat cagcgtaccg gaggagtcaa acaggtttac cagcatgaag
    33961 gagaaaataa cccccgccag gccaagattg aacgagcctg ccaaatcgac atgccctacc
    34021 acgctggtga cgcttggcgg cgcggagaca atgccgttgt agtgcacatc gcccattatc
    34081 cagccaagca gcgtcgtgac gatgatggac accagcaccg ccgcatgaat gttgcgcgaa
    34141 gcgagaatcg caataataaa gaatccgaga acccccagca gcacgctgtg cgaagtcagg
    34201 ttgccgatgc tgaccagcgt ttccgggtta gcgacgatca cgccggcgtt tttcagcccc
    34261 atcatgccga taaacaggcc gatgccgctg gtgatgccca cgcgcaggct gaccggaatg
    34321 ttggcaatca tccagtaacg cacgcggaag atagtcagca ataaaagacc aacagcgccc
    34381 cagaaaatgg cgcccatgcc tacctgccac ggcagtccca ttgcctgcac aaccacgaag
    34441 gcaaagaacg cattcagccc catcgcgggc gccagcgcca ccggcaggtt agcgaacagg
    34501 cccatcagaa tactgccaaa ggccgcaatc agacaggtgg tcacaaagac ggcgctggtg
    34561 tccatgccag ctacgcccag aatttgcggg ttaacaaaaa cgatataaac catcgtcagg
    34621 aaagtggtaa aaccggcgat cacttcggtt cgtgccgtcg tgccatgttc gcgcagttta
    34681 aacacgcgtt ccagcatacc ctgaccagaa gcctgggtgg tgtgttgttg actcattatc
    34741 aatttccgga gaaaggaggg aaaattcgcc gttatcctat accaaaatgc gacacctggc
    34801 gcagttgtgt ggtaattttt ttcactcaat ttgttagtac ggcaacgatt gcgtcccctc
    34861 attcagcatt acgtaaacgt taaacttgtt aaaatggaaa tgacatgtcc caaatcgaag
    34921 cggtgttttt tgactgtgac ggcacgctgg tcgacagtga agtaatttgc tcgcgcgcct
    34981 atgtcactat gttccggcag ttcggcatta cgcttgagct cacggaagta ttcagacgct
    35041 ttaaaggcgt aaagctctac gaaattatcg ataccatcag taaagagcat ggcgttgcgc
    35101 tggcaaaggc ggagctggag ccggtgtatc gcgcggaagt ggcgcgcctg ttcgataccg
    35161 aactggaagc gatcgcgggc acaaataccc tgctggagag cattaagacg cccatgtgcg
    35221 tggtatccaa cgggccggtc agtaagatgc agcattcgct gggtaaactg ggcatgttgc
    35281 atcattttcc cgatttgctg tttagcggtt acgatattca acgctggaag cccgatccgg
    35341 cgctgatgct ccatgcggcg aacgccatga aggtcaatgt tgagaagtgt attctggtgg
    35401 atgattccag cgcaggcgcg cagtcaggaa ttgcggcggg aatggaagta ttttatttct
    35461 gcgccgatcc gcataacaag ccgatcgatc accctaacgt gacgacattt accgatttgg
    35521 cgcagttgcc gggattgtgg aaagcgcgcg ggtggaagat tacgcgttaa ctgaaatgcc
    35581 ggatggcgct aacgctcatc cggcctacag catctgtacc tgtaggcccg gtaagcgcag
    35641 cgccaccggg caaaagaatg agatttactc tttcggatct ttccccgcca gcagcttatc
    35701 cagctcatcg ccgccgacgt gacggaaatc ctgccccttc acgaagtaga agatgtattc
    35761 gcagatattc tggcaacggt caccgatacg ctcgatagaa cgagcgcaga ataacgcggt
    35821 cagcacgctg ggaatggtgc gcgagtcttc catcatgtag gtcatcagct gacgcacgat
    35881 accttcgtac tcctggtcaa ctttcttgtc ttcacggtag atacgcaccg cttcgtcgag
    35941 atccatgcgc gcgaacgcat ccagcacgtc gtgtagcatc tgcacggtgt ggcggcccag
    36001 cgactccaga ctcaccaaca gcggctggtg ctgctgggag aatttctcca gcgcggtacg
    36061 gcagatttta tccgccacgt cgccaatgcg ctccagttcg gcgatggttt tgataatcgc
    36121 catcaccaga cgcaggtcac tcgccgtcgg ctggcgcttg gcgataatac gcacgcaggc
    36181 ttcatcgatg gcgacttcca tcatattaac ctgatggtcg ccttctacca cgcgcttcgc
    36241 cagctcgctg tcctggttgt gcatggcggt aatagcgtca gaaagctgct gctccaccat
    36301 gccgcccatg gtcattacct gagtgcggat gctttccagt tcggcgttga actggccgga
    36361 aatatgttta ttaaggttca gactgtccat tacgcactcc tgaattaacc gtaacgaccg
    36421 gtgatataat cttctgtttg tttcttcgcg ggcttggtga acagatcgtc cgtgttgctg
    36481 aactcaatca actcgcccag gtacataaac gccgtatgat cggaacaacg tgccgcctgc
    36541 tgcatgttat gggtcacgat caccacggtg taatcctgtt tcagctcggt gatcagctct
    36601 tcgatacgcc cggtggagat cgggtccaga gctgaacatg gctcatccag cagcaacact
    36661 tccgggcgaa tggcgatacc gcgcgcaatg cacagacgct gctgctgacc accggagaga
    36721 gagtacccgc tctggtgcaa tttatctttg gtttcgttcc ataatgcggc tttggtcaac
    36781 gcccactgca cgcgctcgtc catatcggca cgagacagct tctcaaacag acgcacgcca
    36841 aaggcgatat tgtcatagat ggacatcggg aacggcgtcg gcttctggaa taccatcccc
    36901 acttttgcgc gcagcagcgc gatatcctgg gtgttggtga gaatattgtc gccatccagc
    36961 agaatttcac cttccgcgcg ctgctccgga taaagcgagt acattttatt gaaggtacgc
    37021 agtagcgttg atttaccgca gccggatggc ccgataaatg ccgttacctg attcttcgcg
    37081 atatccagat taatgttctt cagggcatgg aatttgccgt agtagaagtt caaatcacga
    37141 acctgaatct tactcggggc agtttcaacc atactcattt cactcttttc ctcatccagc
    37201 gccgcatccg ccacgccgta aaataatgcc tgatggcgct acgcttatca ggcctacaat
    37261 gtctttaacc gtgttttttc ttcgcgaaaa caacacgcgc cagaatattc agcagcagta
    37321 cgcacagggt aataatcagc acgcccgccc aggctaattg ttgccattcg gcaaacgggc
    37381 tcatcgcgaa tttaaaaatg gtcaccggca ggttggcgat cggctgcatc atgtcggtgc
    37441 tccagaactg gttcgagagc gcggtaaaca acaatggcgc cgtttccccg gcgatacgcg
    37501 caatagccag cagaataccg gtcataatcc cggagataga ggctttcagc gtaatcgcgg
    37561 agatcatctt ccacttcggc gtacccagcg cataagcggc ttcacgcagg ctatccggta
    37621 ccagcttgag catgttttca gtggtacgga taacgatcgg cacctgcaac agcgccagcg
    37681 caatcacccc tgcccagccg gagaagtgct gcatctgcgc caccacgatg gtgtaaacaa
    37741 acagccccac aacaattgac ggcgcggaaa gcagaatgtc gttaataaag cgaatgattt
    37801 ccgccagcca ggatttacgg ccatactcgg ccaggtaaat acccgccata atccccagcg
    37861 gcgtacccaa tacggtagcc cagagaatca ataatccact ccccgccagg gcgttcgcca
    37921 gcccgccgcc cgccgtgttc ggcggcggcg tcatttcggt aaacagcgcc agcgacatac
    37981 catcaatgcc gcgcgtgatg gtggacatca aaatccagat cagccagaac aggccaaatg
    38041 ccatcgtcgc cattgagagc gttagtgcga tacggttctt catgcggcga cgcgcctgca
    38101 tcttgcgacg gaattccgcg agctgcgcgg tgttctgcat atcaagcgta gccattaacg
    38161 tgctccctcg ttcttcgcca gacgcataat catgaactta gacgccgcca ggacgataaa
    38221 ggtgatcaca aacaggatca gccccagctc catcaacgct gccacgtgca gacccgattc
    38281 cgcctcagcg aattcgttgg ccagcgcgga agtgatgctg ttgcccggca tatacagcga
    38341 cgcgctgtcg agctggtagg tgttgccgat gataaaagtg accgccatcg tttcacccag
    38401 agcacggccc agccccagca taatgccgcc gatcacgcca tttttggtga acggtagcac
    38461 gatgcgccag ataacttccc aggtagtaca gccgataccg taagcggact ctttcatcat
    38521 taccggcgtt tgctcgaaga cgtcgcgcat aaccgccgca atgtagggga tgatcatgat
    38581 ggcgaggatg acgcccgccg ccagaatacc gataccaaag gccgggccgg agaacagcgc
    38641 gccgacaaac ggaatgttgg aaagaatatt gccgaccggc tcctggaagt acgtcgcaaa
    38701 cagcggcgcg aagataaaca gcccccacat gccgtacacg atactgggaa ttgccgccag
    38761 cagttcaatg gcgatgccga gcggacgctt cagccagcct ggcgccagct cggttaaaaa
    38821 cagggcaatg ccgaaactaa ccggaacggc gatcagcagt gcgataaagg aggttaccag
    38881 cgtgccgtaa atgggcacca gtgcgccgta gatatcgttt ggcgcgtccc actccttagt
    38941 ccaaagaaat gagaaaccaa atttctgaat acttggccag gaggagatga tcaatgagac
    39001 gataataccg cccaacatca atagcacaat cagcgcagcc agttttacca gcgcgctgaa
    39061 aatcatgtcg ccttttttac ccggcgggtt aaaagcaggc ttggttgcag ccataaatta
    39121 ctctttccat taaacgcatt ttacgacgtt gcccctgccg gatggcgcta cgattatccg
    39181 gcctacaacg tgggcctgcg gtcgaaaccg tagggcggat aatcgtagcg ccatccgcca
    39241 attcgttaat taatacagcg ccttaccgtt gctgtctttt atactggtct tccaggcggt
    39301 acgaacctga tcaacaacgt tatccggcag gctggcgtag tccagatcat tcgcctgttt
    39361 agcgccattt ttgtaggccc agtcgaagaa cttcaacact tcagcaccct gctcaggttt
    39421 cttttgcgct ttgtggacca ggataaaggt ggtggaggtg attggccaca catcgtcacc
    39481 tttctggttg gtcagatcct gcgcgaaggt tttgctccag tctgcgcctt tcgccgcatt
    39541 agagaagctc tcttccgtcg ggcttaccgg tttgccgtcg gcagaaacca gtttggtgta
    39601 ggccaggttg ttctgtttag cgtaagcgta ttcaacgtag ccgatagcgc ctggcagacg
    39661 ctgtacaaat gccgcgatgc cgtcgttacc tttaccgccc agaccggttg gccagttcac
    39721 ggtagaaccc gcgcccactt tcgatttcca ctcgtcgttg actttcgcca ggtaactggt
    39781 gaacacgaag gaggtaccgg aaccgtcagc gcgacgcacc acagcgatat tctgtgaggg
    39841 cagcttcacg cctgggttca gtttggtgat ggcttcatca tcccacttct tgattttacc
    39901 gaggtagatg tcacccagcg ttttaccatc cagcaccagt tcgccggatt tgaggcctgg
    39961 aatattcacc gccagcacca cgccgccgat caccgtcgga aactggaaca ggccttcctg
    40021 attcagtttt tcgtcagaca gcggcgcatc ggaagcgcca aaatcaacgg tattcgcggt
    40081 aatttgtttc acgccgccgg aagagcctat cccctggtaa ttgactttgt taccggtttc
    40141 tttctggtag gtatccgccc atttggcata caccggcgca ggaaacgttg caccggcacc
    40201 tgtcaggctt gctgctgcaa aggcagagaa cgcgctcatc gataaagtcg cggcgacaac
    40261 agttgcgaca gtggtacgca taactttcat aatgtctcct gcacggtttc ggtaaatcgt
    40321 tgtttgagtt gctacgatga gcaaaatagg acaaattgat gacagttata tgtcttgatt
    40381 atgacggttt gatgacaatg gaaataaaaa agctggcccg gggagacacc agaccagcct
    40441 gcagggggag atgaattaaa ctgtttgcgc aaccgcagac ggtttcaaca gcgcgtacat
    40501 caggccgcag acaatcgtgc ccagggcaat cgagagcagg tactgcatca catgttctac
    40561 cgcatgcggg atcgccagga caaagagacc accgtgtggc gccatcagtg tacaaccgaa
    40621 atacatggac agtcccccgg cgattgcgcc accgaccatc gtggaaggga tgacgcgcat
    40681 cgggtcacgc gcagcgaagg gaatcgcccc ttcagagata aagcacagcc ccaggataaa
    40741 ggatgcgtta cccgcttcat gctcagaggc agtgaatttc gctctggccg cccaggttgc
    40801 gacgcccatc cctaatgccg gtaccatccc tgccgccata atggccgcca tcggcatata
    40861 ggaatgagaa gccagtaaac cgacgccgaa ggtatacgca gctttattca ccggcccacc
    40921 aaggtcaaaa ccttgcattg cgcccagcaa cattcccagc aagatagcat tcgtagaggt
    40981 catattcccc aggaacgtcg tcagcccttc catcaccgca gaaacggggc cacccaccac
    41041 gtaaatcatg attaggccgg taatcagcgt agacagtagc ggcagaacca gtaccggctt
    41101 aagcgcttcc attgacgctg gcagcttaat attttgcgcc agaaaccgta cgctgtaacc
    41161 ggccagaaaa ccggccacaa tccctcccag gaaaccagca ccgcacaggc tggccaacat
    41221 cccgccaata agccccgggg ccagacccgg acgatcggca attgagaagg caataaaccc
    41281 agccagtacc ggcaccatca gcgcaaaggc cgccttacca ccgatttgaa ataacgcagc
    41341 cgccagcgtg cccggctcat tgaaggcctg gataccgaag acaaaagaga gcgcgataca
    41401 taaccctccc gccaccacca aaggaagcat atgggatacg ccggtcatta aatgcttata
    41461 aacgccgggt agctctgttt taccagctga agaagagcgc ccggcactcc cctgatagac
    41521 ctcggcgcta ttgaaagcat tatccatttc ctgcgcactc ttttttagcg ccgcgccggt
    41581 actggtgcga tagagtcttt tgccaacaaa gcctgacaga tccagctcaa tatccgccgc
    41641 gataatcacc acatccgctt gcgctatctc ttccgcggtc agcgtgttct tcgccccgac
    41701 ggaaccgcgg gtttcaacct tgatccagtc accacgcttg cgggcttcaa tttccagcgc
    41761 ttcggcagcc ataaaggcat gggcgacgcc cgtcggacag gccgtcacag caacaatttt
    41821 tttagtcata gtaggatacc ctgttctttt aatttaaaga aaaagcggga aaaaatgtta
    41881 cagacgtgac caggccgcgg ctttctggaa cagtgcgtca tccgggcgaa tcccggtata
    41941 aaggacaaat tgctccacgg cctgaatagc aaacacttcg gaaccgataa tcacggtttt
    42001 accgcgttca cgggcgtagc ggattagcgg cgtgacgggc ggtagcgcca ccacatcaaa
    42061 gataacgctc gccttatcca cttcttgttc ggaataagag agtttgtcgg catcattacc
    42121 gccagccatt ccgataggcg tggcgttaat taacaaatcg gcttcaatac cgtcggtatc
    42181 cgggcgccat tcatagccat agagttcggc cagttgttta cctgacgctt catcaatcgc
    42241 gacaatataa ccacgggtaa accccgcatc cttcagcgcg caggccaccg cctttgccat
    42301 accaccgctg ccacgcaaag caaacacctg gtcgggagag accttgtaat tcgccagcaa
    42361 gcgagctatt gcaatgtaat cggtgttgta cgccttagcg gaagcatcca gttcatccac
    42421 cagcggaatg caggcttcct taaatggcat agagatcgcg cacccacgta tccccagccc
    42481 gcgcacgccg ctaatggcct gcgtaagatc ggtcggcgag aaagctttgt agagataatt
    42541 gagatccagc gcttcgtaca gatagttgtg aaagcgtgta ccgaagttac ttgggcgtgc
    42601 agccagggac atgcagacct gagtgtcttt attaatgcgc tttgtcatga tgaatcctca
    42661 tagaagttgc gatagagaaa atcatcggct aaaaagggga tattaaaaat tgctcattcc
    42721 cgttcgggaa atttcatctt ttatggcaac ccggcacact gaacaaaaat acttaaagct
    42781 actccagcac tatggcgata agcccgttag cgtgacgcta caggagctgg cggatgtgtt
    42841 gttctgcacc cggcggcata tgcgtaatct gttgcttcag atgcaggagg caaagtggct
    42901 catctggcaa tcacaggccg gacgtgggca tcgcgcccgg cttcacctgc gctataaacc
    42961 agaacagctg ttaagcgaaa aggcggagca gttgctggag tctggtcatg ttgatcaggc
    43021 cattcagctg ctgggtaaaa ataagcacca ggtggcgcaa ctgctgcgct caaaactggg
    43081 ctatagcgtg cgggcagact atcagcggct gtgcatcccc tattaccgga caatgccgtc
    43141 gctgtgcccc ggcataccgt tgcgtcgctc tgagcagcat ctggtcaggc agatttttag
    43201 cggcctgacg cgcataaatg aggaaaaagg tgaagtcgaa gccgatcttg cccaccactg
    43261 gcggcagatt gatccactgc gctggcgttt ttatctgcgc cccgccgtcc tctggcatga
    43321 tggtcaggag ctgacgatcg acgcggttat cgcttcactg acccgcagcg ctaagctgcc
    43381 gttgttctcg cacttgcaga ccattcaggc caccgggccg ctgagccttg aaattacgct
    43441 ggcgcacccg gataaccgac tgccgctgct gctcagccat attgatgcca tgatcctacc
    43501 gcctgaccat acacaacgcg ctgatttccc ggcacatcct gtggggactg gcccttatga
    43561 ggtggtggaa aacaatggct ttcatctgca aatgaaggcc tttgaccact atttcggcct
    43621 gcgcgggctg ctggatgaag tggaggtctt tatctggccg aatttaacgg agacagacaa
    43681 cctggcggaa tcgctgtcgg ataacgacac ggcagcctgg ctcagttcca gcctgagcga
    43741 tgaggattac gtttccggac ggcttagcca ggtatcaggc aaaccttctg acaacctgcg
    43801 cgagatgttt cttgagcgtg gaggatattt tttattatgc gacagccgct ccccgcactg
    43861 gcataccgcc gaacatcgcc gctggctgcg ggaaactctc agcccttacg ccttactcca
    43921 gcatctgagt gaggcaattc gccccttctg ggtaccgggc ggcagcctgc tgtcctcctg
    43981 gtttcatact attgaggcgg gcccggcctg ttcacctttt atctcgtcgt cgccctacgc
    44041 aaaacttcgt ctggcctatc acgatcagca ccctgaattt ccaatgctcc tggatattat
    44101 gcaagagatc atgcgccagc agggcatttt acttgagggc gttgagctga attatgatga
    44161 ctgggcgaat ggcaaaacca atgtggatct ctggctgggg acggtcaatt tccccattcc
    44221 cgaagagtgg aacgtcggta catggctact gggctcccct ttactgcgcc acgccatcag
    44281 cggtggggat gatgcgctgc tggcccaatg ggaaacccag tggcatgccg aaaccatcag
    44341 cgcggaacaa ctggtcaggg aaaccacccg ttcaggctgg ctacagccgc tttttcacca
    44401 ctggatgcga ctcaaaagcc ccgaccgggc cagggggatc cacctgaata acctgggatg
    44461 gtttgatttc cgatccacct ggattgagcc agggccgtag ttcattgata tgacttattt
    44521 tgtaattaga ttagttcgtt atttccagcg tgatcgtggc gtaagcttca aatgtaccag
    44581 gttgaggccg cgctcccgtc gcgctggcag gcgcggcaga aaaagtcaat gagttagtct
    44641 cggcgccgcc attattgacg cccatatcca tatccatttt tccgcctgtc accttaacca
    44701 tccgatccca tttgtcataa atcataattc cgacatcatc attacccaga actttcatca
    44761 tatttgcgct ggaatcaacg ggatcagcat taaatgtcga atagacgata ttctcatcca
    44821 acattccggt acatttcacc tgtaccgttt tagtcacttt atgacccgca gcagcggtgc
    44881 cttgcgttgt cgagaaatcc gcaaccggga tcttaccgaa attcacctct atcacctggc
    44941 cggaatcaat ttcacagctc tgcggcgcca cgatatcgcc aacaattctg acttccgcca
    45001 atttgtcggt actggcagtc gaggagctgg catcaagccc cccgtataaa ttagccacaa
    45061 tcgtgccagg aatggcaacc tgaccgacaa acggtttatt gataaggaaa gagaccttga
    45121 cctccgaccc ggtatataac gttgcgagat tgccctcaac ggtatcggta taacaattca
    45181 tcccatcttt tactacatta ggttcagcct caaagggaac cgcaataaag cctcgtccaa
    45241 gaacagcaat cgacgttgca atacttaggt tatcgttaag cgtatagtag gtgtaaccat
    45301 ttctggtggt atcaatactc agcggcgaac gagcggtata atagacttca cgaaacgtcg
    45361 atgaaaaatg ggtcaaacag ctacagccaa ctttatatga ttctgacgat gttaatgtct
    45421 ccagatccct gacctctgtt ccggctttat ttttttctgc gggaatccgg gcgtcattga
    45481 gattaaggtt ataaatataa gtccctttaa ccgcatgaca aatgccatcg ccagcccggc
    45541 aaacaggcga aataagaacc ataaagcatg aaaataatat tattgtccat aagcgcataa
    45601 ttaaattcct tattggcaag tgacggcttg ctgcaccagt tcagcattct ctgttttatg
    45661 acctaacgta taattaacgg cacatgttgt tgattcatca ccgccccaac ttagagtgaa
    45721 atgaccgttt tccggcatcc ccgataaata gagttcgccg ttatcgccga caatcccggt
    45781 taccgttccg gaatccagct ccgccgacgc catcgcgcca aacggcgcag gtttgccatt
    45841 cacttgcatc acattaaaca acacgcgata accgacatgc gtcacaaacg ccgctttcac
    45901 cacggcgccg cgcgttggca ccagattgac taccgtgtta tccagctcaa tattggcttt
    45961 ggcaaaatag ttgctgtcaa tcgccatgcg gttttcgtcg tacgggttaa gctgcgtttt
    46021 caccgtatag ccccgccagt ctgtagcaac cccagtcgtg ttttctacgg taaggccatc
    46081 agcacccggc gcttccacca gcgcgacggt ttcccccaac tcctgcgaga aggtcacacc
    46141 gccgctgtga accaggatgc cgccgcgggc gccatagttc agcgtttgtg aatcacggct
    46201 ccaggcataa ccgccgttta ctgaaccata agtaccgtca taccccatgc tggcgttacc
    46261 accataggta tcctccggcg tactggtcca ggattcctgc acgttatagg aaagattgtg
    46321 gccctccagc aacgtgccgc caacgccagc ctgcattgtg ctgtcgttat gattattttg
    46381 cgtcatcgag tagttaacgt agctgctctc cttcgcccct gaaagcggga tggaaaccgt
    46441 cagcatgaat atctgttcgt gatcgctgtc atcgttgtcg tttttattat tgctgccgga
    46501 agaacgattc gcagagtcgg tatagttcca cgacgcgttc cacgaaattc gccgccagct
    46561 attgctatag ccaaactgca ccaggcgctc gacttcatcc gtttgccagt attgctgacg
    46621 gcttaacgtc agataaatgt tgccaaaacc ggggccaaat gattgcgtcc aggttccttc
    46681 cacgcggcta cggcggttgc ccgtctccca gaaatcagag ctgttgtcct gcctcgatgc
    46741 ccactcgccg agggtgtaat agccttccgt ggaataacgg taccccacca gacggaaact
    46801 ggtgtcggta tcatcaaaac gtttggagta gagaaaacgc caggactggc cgctttcatt
    46861 atcaccatcg tcaaagtgtg aacgggcgtg ggtcacatca aacgatacgg ccccgatcga
    46921 ccccatatct ttacccatac caagcgcggc ggaagcataa tcttccgcaa cctgcgtgcc
    46981 gccatagagc gttaatcccc atggcaggcc atgcaacacc tgcgcctgaa cgacgttagg
    47041 ggtaaatccg ctttcatcgc gcatttcacc gacgctaata tcaaaatcgg tctggccttc
    47101 acgcttcagt atcgccagcg acgcgtacgg ctgggtaaag tgctgctcgc tgccgtcttc
    47161 ttcttttatg gtgacatcaa gatcgccgcc gccgctggtg gtgttcaggt cggtgatctc
    47221 gaaagcgccc tgcggcacgg ctgactgata aatgacatat ctattctgcc ggatgatgac
    47281 ggtggcgtta cttttcgcca ccccgcgaac cactggcgca aacccgttct ggctcgacgg
    47341 tagcatgtca tcgtcggtat agagtctgac cccgcggatc tgggcgctat caaagacata
    47401 actcgccgtc caggtgtcgc cgaccataat ctggctgcgc agcgcggcga tatcgcgctg
    47461 gacatagcta ctgatggagt gatattccgt gtcgctgccg gtggcgctca gcgtactgta
    47521 gttacgcaac cgccatgctc ccaggttaat cccgttacgc aggttcagat aataagagtc
    47581 atcgttccca ttgtcgtaat tagactttac cgtgtgcgat ccggaaaaat cttaattgac
    47641 catcatcgca ttgatgccct catcccagcg tgacgggctg atatagtcat aggccgccgt
    47701 gttcagatag atctgtggaa cagatatatt taacgccagc ttattcgcat ctaataacca
    47761 ggtggtgcca tcaattaacg gaacgggatt cacgcaggct gtattatcga catcctgcaa
    47821 gcctttcacc gcgtctacct taacaccata cgacgacaat acatccttaa ccgcgacaaa
    47881 gcagggatgc agttcggcat ccggttgatc ctgcacaaag gtcacatccc gtcgttcaaa
    47941 cagtttcccg ttaatgacga tatcgacctt ataatcgccc ggcggcaacg cgttggaacg
    48001 gttaaactga tgaatatcca cgtccacggg gtgatcgatt tccagcaaac cagggttaaa
    48061 tagcgtttcc ctagccattg tcgggaaagc gatactcaga taagcacctg aaatcaagac
    48121 gaggcaaaga cgagggtgaa tcatcaagat atccttatcg caaaactaaa gcgcttgctt
    48181 aacagggcta ctaatcgcgc cgtaatcatt aataaaacgc caggctaaag cgtgccccgt
    48241 aacaccagta ggtaaatcca gcgttaattt ttcaaaaggc tttatcatat tcaatggaac
    48301 atctttaccg tctacagaga catccatgat attcatatga ataggactat tattttctac
    48361 aaccagttta cttccctgtc gataccattt gactttagct accgcctttt ccgggataag
    48421 cgtaatagag gccgggcgcc agaataactt gatacgcgtt ttaattgcga tctcaagcgt
    48481 actgctatct ttatttttac tggatggcgg aatgtttttc acattaaacc aaaaaacaga
    48541 ttcgcgatcc tttggcaact cacccgctgt tttaataatg cgcagcactt tttcctgact
    48601 cggctcaaga cgagaaacag gcggaatgac ggtaaaaggt ggtttgctct tatcatcctt
    48661 actgaaagga tcaacccata cttgtattag ataaggcaaa tcaacttctt tattgtaaat
    48721 agaaatagta gagtcaggat cgttgccatg aaaaatgacg cgagttccac cgaccacaat
    48781 acctgcaaaa gcagagggaa gattaaggca caggagtgcc agaataacta tttttattcc
    48841 acgagcaaac atagacaaac tcatccctgg ataaaaaaga cgccgggcat ttatacaact
    48901 acagttgttc acaatggcag gcgtcaataa attaataaaa gacgtttaag aagagcgaat
    48961 cttatttttg gtattcgaca gtgaactgag aatctgcgtt agcagtaccc gcagtgacgg
    49021 ttgcgtcagt ggcgatataa cgcgcgataa actccataga agccgtaccc gctgtggtat
    49081 caatcgtgct atacgcagaa tcgttgtaca gtttaacttg tgagttatcc gcgcggttgt
    49141 aaatacggat cgctacgcca gatgctgtaa tggcagcgcc gtcaccggtg taatcacccg
    49201 gggcatcgcc attagcaggg ttgccgatag ccaggtcgcc atcgctgttg gaagcttcgg
    49261 taccatcaaa acgaacggca gccttagtat acgtagccgg gcacccggtc aggtcgatat
    49321 ggaactcggt aggcgcagcg gtacttccca cgccagcaaa tgccgttttg ttaactttgc
    49381 ctaaattaac gttttgatca gcggtttgtg gcgtaacctg gcaggtgctg tcaaccactt
    49441 caccaaggaa gtgaacggtg ccatcagatg ccattgcatt acctaccagc atagtagaag
    49501 acagaaccag ag
//
LOCUS       DAJVSD010000006        47449 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.006, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000006 DAJVSD010000000
VERSION     DAJVSD010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 47449)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 47449)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..47449
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.006"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..379
                     /locus_tag="OQP62_000245"
     CDS             <1..379
                     /locus_tag="OQP62_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DJ-1/PfpI/YhbO family deglycase/protease"
                     /protein_id="HCS1719893.1"
                     /translation="SEASVTIDKAIDDVRPDEFDALLLPGGHSPDYLRGDSRFVDFTR
                     DFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQ
                     LVTSRTPDDLPAFNREALRLLGA"
     gene            complement(359..802)
                     /locus_tag="OQP62_000246"
     CDS             complement(359..802)
                     /locus_tag="OQP62_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhbP family protein"
                     /protein_id="HCS1719894.1"
                     /translation="MDTLTAIGRWLAKQHVVTWCVHHEGELWCANAFYLFDAQNVALY
                     LLTDDKTRHAQMSGACAPVAGTVNGQPKTVARIRGVQFKGEIRRLEGQESDAARKAYL
                     RRFPVARVLPAPVWEIRLDEIKFTDNTLGFGKKLHWLRDSRAQQA"
     gene            840..1157
                     /locus_tag="OQP62_000247"
     CDS             840..1157
                     /locus_tag="OQP62_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462184.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HCS1719895.1"
                     /translation="MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKA
                     LRGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVL
                     KND"
     gene            complement(1144..1647)
                     /locus_tag="OQP62_000248"
     CDS             complement(1144..1647)
                     /locus_tag="OQP62_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS1719896.1"
                     /translation="MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGL
                     VATDDEGQVVGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNE
                     FGYAAVVTLGDPALYSRFGFELAAHYDLHCRWPGTESAFQVHRLAEDALEGVTGLVEY
                     HDHFNRF"
     gene            complement(1641..2165)
                     /locus_tag="OQP62_000249"
     CDS             complement(1641..2165)
                     /locus_tag="OQP62_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 domain-containing protein"
                     /protein_id="HCS1719897.1"
                     /translation="MLDKLRSRLVHAGPSLMSVPVKLTPFALKRQVLEQVLSWQFRQA
                     LADGELEFLEGRWLSIHVRDIDLKWYTTVENEKLIVSQQADADVSFSADASDLLMIAA
                     RKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRIMLLQLADFVEAGMK
                     NSPETKQTSVGEPC"
     gene            2382..3377
                     /locus_tag="OQP62_000250"
     CDS             2382..3377
                     /locus_tag="OQP62_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017457364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HCS1719898.1"
                     /translation="MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTE
                     KKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEY
                     AAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPL
                     EVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLID
                     RYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQR
                     SPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ"
     gene            3368..4264
                     /locus_tag="OQP62_000251"
     CDS             3368..4264
                     /locus_tag="OQP62_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462188.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HCS1719899.1"
                     /translation="MAVRGAMKYSLGPVLYYWPKETLEDFYQQAAKSSADIIYLGEAV
                     CSKRRATKVGDWLEMAKSLAASGKQVALSTLALVQASSELSELKRYVDNGDFLLEASD
                     LGVVNLCAERKLPFVAGHALNCYNAVTLRRLLKEGMVRWCMPVELSRDWLVNLLNQCD
                     ELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRDVLSQENQ
                     QVFVLNGIQTMSGYVYNLGNELTSMQGLVDIVRLSPLGTETFAMLDAFRANENGGAPL
                     PLAAHSDCNGYWKRLAGLELQA"
     gene            4442..5449
                     /locus_tag="OQP62_000252"
     CDS             4442..5449
                     /locus_tag="OQP62_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HCS1719900.1"
                     /translation="MTDKTIPFSVLDLAPIPEGSSAKEAFTHSLDLARLAEKRGYHRY
                     WLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLY
                     PGRIDLGLGRAPGSDQPTMRALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPG
                     YGEKIPIWLLGSSLYSAQLAAQLGLPFAFASHFTPDMLFQALHLYRTQFKPSARLEKP
                     YAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIENMETFWSPSEQYGV
                     QQALSMSLVGDKAKVRHGLVSILRETQADEIMVNGQIFDHQARLHSFDLAMDVKQELL
                     G"
     gene            complement(5540..6784)
                     /gene="mtr"
                     /locus_tag="OQP62_000253"
     CDS             complement(5540..6784)
                     /gene="mtr"
                     /locus_tag="OQP62_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan permease"
                     /protein_id="HCS1719901.1"
                     /translation="MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWS
                     MAALVFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYIL
                     TYAYISASGSILHHTFAEMSLNVPARAAGFAFALLVAFVVWLSTKAVSRMTAIVLGAK
                     VITFFLTFGSLLGHVQPTTLFNVAESHASYTPYLLMTLPFCLASFGYHGNVPSLMKYY
                     GKDPRTIVKCLIYGTLLALALYSVWLLGTMGNIPRPEFIGIAQKGGNIDVLVQALSGV
                     LNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRFKTALLTFLPPM
                     IGGLLYPNGFLYAIGYAGLAATIWAAIVPALLARKSRERFGSPKFRVWGGKPMIALIL
                     VFGVGNAVIHILSSFNLLPVYQ"
     gene            complement(6938..8827)
                     /gene="deaD"
                     /locus_tag="OQP62_000254"
     CDS             complement(6938..8827)
                     /gene="deaD"
                     /locus_tag="OQP62_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312070.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DeaD"
                     /protein_id="HCS1719902.1"
                     /translation="MAEFETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGR
                     DVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR
                     GVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE
                     MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP
                     DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN
                     GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIG
                     RTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQ
                     QQLESSDLDQYRALLAKIQPSAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKR
                     EFRDRDDRGPRDRNDRGPRGDREERPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAI
                     ANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAVPH
                     AGGERRGGGRSFSGERREGGRNFSGERREGGRGDGRRFSGERRESRGPRRDDSTGRRR
                     FGGDA"
     gene            complement(8820..8900)
                     /gene="yrbN"
                     /locus_tag="OQP62_000255"
     CDS             complement(8820..8900)
                     /gene="yrbN"
                     /locus_tag="OQP62_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YrbN"
                     /protein_id="HCS1719903.1"
                     /translation="MKIADQFHDELCRLAAINFEAHVLHG"
     gene            complement(9006..9890)
                     /gene="nlpI"
                     /locus_tag="OQP62_000256"
     CDS             complement(9006..9890)
                     /gene="nlpI"
                     /locus_tag="OQP62_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020802045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpI"
                     /protein_id="HCS1719904.1"
                     /translation="MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVIL
                     ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL
                     GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD
                     PNDPYRSLWLYLVEQKLNEKQAKEALKARFEKSDKEQWGWNIVEFYLGDISEATLMER
                     LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALL
                     ELSLLGQDQDDLAESDQQ"
     gene            complement(10000..12135)
                     /gene="pnp"
                     /locus_tag="OQP62_000257"
     CDS             complement(10000..12135)
                     /gene="pnp"
                     /locus_tag="OQP62_000257"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HCS1719905.1"
                     /translation="MLNPIVREFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTV
                     VGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPL
                     FPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ
                     YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQA
                     INDLVKEAGKPRWDWQPEAVNDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSE
                     TIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVL
                     PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGM
                     VGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLAL
                     MDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMD
                     IKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIK
                     DVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRI
                     YNSKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ
                     GRVRLSIKEATEQSQPAAAPEAPASEQAE"
     gene            complement(12377..12646)
                     /gene="rpsO"
                     /locus_tag="OQP62_000258"
     CDS             complement(12377..12646)
                     /gene="rpsO"
                     /locus_tag="OQP62_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HCS1719906.1"
                     /translation="MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFA
                     EHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR"
     gene            complement(12797..13741)
                     /gene="truB"
                     /locus_tag="OQP62_000259"
     CDS             complement(12797..13741)
                     /gene="truB"
                     /locus_tag="OQP62_000259"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HCS1719907.1"
                     /translation="MSRPRRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHT
                     GALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVT
                     FSAEQLASALETFRGDIEQIPSMYSALKYQGRKLYEYARQGIEVPREARPITVYELLF
                     IRHEGNELELEVHCSKGTYIRTIIDDLGEKLGCGAHVTYLRRLTVSKYPVDRMVTLEH
                     LQTLVAQAEQQGVPAAQLLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTTGAP
                     LKGLVRVTEGEDDKFIGMGEIDDEGRVAPRRLVVEYPA"
     gene            complement(13741..14142)
                     /gene="rbfA"
                     /locus_tag="OQP62_000260"
     CDS             complement(13741..14142)
                     /gene="rbfA"
                     /locus_tag="OQP62_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001712908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HCS1719908.1"
                     /translation="MAKEFGRPQRVAQEMQKEIALILQREIKDPRVGMMTTVSGVEMS
                     RDLAYAKVFVTFLNDQDEAAVKNGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNS
                     LVEGMRMSNLVTNVVKHDEERRVNPDDSKED"
     gene            complement(14363..17041)
                     /gene="infB"
                     /locus_tag="OQP62_000261"
     CDS             complement(14363..17041)
                     /gene="infB"
                     /locus_tag="OQP62_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HCS1719909.1"
                     /translation="MTDLTLKALAAERQVSVDRLVQQFADAGIRKSADDSVSAQEKQT
                     LLAHLNREAVSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAER
                     LAAEEQAQREAEEQARREAEEQAKREAQQKAEREAAEQAKREAAEKAKREAAEKDKVS
                     NQQTDDMTKTAQAEKARRENEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWT
                     ATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGRNAKAARPAKKGKHAESKAD
                     REEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQV
                     IKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPR
                     APVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGH
                     AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAVNKIDKPEAD
                     PDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGM
                     ASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGP
                     SIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFVN
                     MTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAA
                     SNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIG
                     LAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNE
                     VRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRTIA"
     gene            complement(17066..18568)
                     /gene="nusA"
                     /locus_tag="OQP62_000262"
     CDS             complement(17066..18568)
                     /gene="nusA"
                     /locus_tag="OQP62_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005131833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HCS1719910.1"
                     /translation="MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEID
                     VRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTF
                     DRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMA
                     GNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEV
                     PEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERI
                     DIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLAS
                     QLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYV
                     PMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMA
                     FKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGELIMAARNICWFGDEA"
     gene            complement(18596..19048)
                     /gene="rimP"
                     /locus_tag="OQP62_000263"
     CDS             complement(18596..19048)
                     /gene="rimP"
                     /locus_tag="OQP62_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004125659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HCS1719911.1"
                     /translation="MSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSED
                     GINVDDCADVSHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALV
                     LRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF"
     gene            complement(19256..19332)
                     /locus_tag="OQP62_000264"
     tRNA            complement(19256..19332)
                     /locus_tag="OQP62_000264"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(19296..19298),aa:Met,seq:cat)
     gene            19676..21019
                     /gene="argG"
                     /locus_tag="OQP62_000265"
     CDS             19676..21019
                     /gene="argG"
                     /locus_tag="OQP62_000265"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HCS1719912.1"
                     /translation="MTTILKHLPAGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTAN
                     LGQPDEDDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNT
                     TPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDT
                     DFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSSVKIVN
                     PIMGVKFWDESVKIPAEEVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMS
                     DQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHSHGRQLGKLLYQG
                     RWFDSQALMLRDGLQRWVASQITGEVTLELRRGNDYSILNTVSDNLTYKAERLTMEKG
                     ESVFSPDDRIGQLTMRNLDITDTREKLFGYAKAGLLTASSATGLPQVENLENKAK"
     gene            complement(21217..21303)
                     /locus_tag="OQP62_000266"
     tRNA            complement(21217..21303)
                     /locus_tag="OQP62_000266"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21267..21269),aa:Leu,seq:gag)
     gene            complement(21317..21649)
                     /gene="secG"
                     /locus_tag="OQP62_000267"
     CDS             complement(21317..21649)
                     /gene="secG"
                     /locus_tag="OQP62_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HCS1719913.1"
                     /translation="MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFG
                     SSGSGNFMTRMTAVLATLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPA
                     QPTSDIPR"
     gene            complement(21872..23209)
                     /gene="glmM"
                     /locus_tag="OQP62_000268"
     CDS             complement(21872..23209)
                     /gene="glmM"
                     /locus_tag="OQP62_000268"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HCS1719914.1"
                     /translation="MSNRKYFGTDGIRGRVGNAPITPDFVLKLGWAAGKVLARHGSRK
                     IIIGKDTRISGYMLESALEAGLAAAGLSASFTGPMPTPAVAYLTRTFRAEAGIVISAS
                     HNPFYDNGIKFFSIDGTKLPDDVEEAIEAEMEKEITCVDSAELGKASRIVDAAGRYIE
                     FCKGTFPNELSLNGLKVVVDCANGATYHIAPNVLRELGATVIAIGCEPNGVNINEEVG
                     ATDVRALQARVLAEKADLGIALDGDGDRVIMVDHEGNKVDGDQIMYIIAREGLRQGQL
                     RGGAVGTLMSNMGLELALKQLGIPFARAKVGDRYVLEKLQEKGWRIGAENSGHVILLD
                     KTTTGDGIVAGLQVLAAMVRNHMSLHDLCSGMKMFPQILVNVRYTAGSGDPLENEAVK
                     AVTADVEATLGNRGRVLLRKSGTEPLIRVMVEGEDEAQVTAFAHRIADAVKAV"
     gene            complement(23202..24050)
                     /gene="folP"
                     /locus_tag="OQP62_000269"
     CDS             complement(23202..24050)
                     /gene="folP"
                     /locus_tag="OQP62_000269"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HCS1719915.1"
                     /translation="MKLFAQGATLDLTHPHVMGILNVTPDSFSDGGAHNTLIEAVKHA
                     NLMVNTGATIIDVGGESTRPGAAEVSVEEELDRVIPVLEAIAQRFEVWISVDTSKPEV
                     IREAARAGAHIINDVRSLSEPGALEAAAETGLPVSLMHMQGNPKTMQEAPKYDDVFAE
                     VNRYFIEQIARCEKAGIAKEKLLLDPGFGFGKNLSHNYTLLARLGEFHHFNLPLLVGM
                     SRKTMVGQLLNVGPSDRLNGSLACAVIAAMQGAQIIRVHDVKETVEAMRVVEATLSAK
                     GNKRYE"
     gene            complement(24155..26089)
                     /gene="ftsH"
                     /locus_tag="OQP62_000270"
     CDS             complement(24155..26089)
                     /gene="ftsH"
                     /locus_tag="OQP62_000270"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014833437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HCS1719916.1"
                     /translation="MAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQD
                     QVREARINGREINVTKKDSNRYTTYIPINDPKLLDNLLTKNVKVVGEPPEEPSLLASI
                     FISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEA
                     KEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG
                     SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN
                     QMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVH
                     MRRVPLATDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI
                     MMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLP
                     EGDAISASRQKLESQISTLYGGRLAEEIIYGVEHVSTGASNDIKVATNLARNMVTQWG
                     FSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQILTD
                     NMDILHAMKDALMKYETIDAPQIDDLMARREVRPPAGWEDPNGTNNSDSNGTPQAPRP
                     VDEPRTPNPGNTMSEQLGDK"
     gene            complement(26193..26819)
                     /gene="rlmE"
                     /locus_tag="OQP62_000271"
     CDS             complement(26193..26819)
                     /gene="rlmE"
                     /locus_tag="OQP62_000271"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HCS1719917.1"
                     /translation="MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQ
                     SDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD
                     ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGS
                     FVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRK"
     gene            26946..27239
                     /gene="yhbY"
                     /locus_tag="OQP62_000272"
     CDS             26946..27239
                     /gene="yhbY"
                     /locus_tag="OQP62_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014833438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HCS1719918.1"
                     /translation="MNLSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAEIEQALEHH
                     ELIKVKIASEDRETKTLIVDAIVRETGACNVQVIGKTLVLYRPTKERKISLPR"
     gene            complement(27395..27871)
                     /gene="greA"
                     /locus_tag="OQP62_000273"
     CDS             complement(27395..27871)
                     /gene="greA"
                     /locus_tag="OQP62_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006178768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HCS1719919.1"
                     /translation="MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKE
                     NAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEE
                     QTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL"
     gene            28119..29552
                     /gene="dacB"
                     /locus_tag="OQP62_000274"
     CDS             28119..29552
                     /gene="dacB"
                     /locus_tag="OQP62_000274"
                     /EC_number="3.4.16.4"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HCS1719920.1"
                     /translation="MRFSRFIIGLTTSIAFSVQAANIDEYIKQLPAGANLALMVQKIG
                     APAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVDNGILKGDLI
                     ARFGGDPTLRRQDIRNMVATLKKSGVTQIDGNVLIDTSIFASHDKAPGWPWNDLTQCF
                     SAPPAAAIVDRNCFSVSLYSAQKPNDLAFIRVASYYPVTMFSQVRTLPRGSADAQYCE
                     LDVVPGDLNRYTLTGCLPQRADPLPLAFAIQDGASYAGAILKQELKEAGITYRGTLLR
                     QTQVNEPGTIVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHVRFNVPGTWRAGSD
                     AVRQILRQQAGIDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPL
                     AGYDGSLQYRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAV
                     PPADQRNRRIPLVRFESRLYKDIYQNN"
     gene            complement(29683..30855)
                     /gene="cgtA"
                     /locus_tag="OQP62_000275"
     CDS             complement(29683..30855)
                     /gene="cgtA"
                     /locus_tag="OQP62_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Obg family GTPase CgtA"
                     /protein_id="HCS1719921.1"
                     /translation="MKFVDEASILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGD
                     VWMEADENLNTLIDYRFEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTG
                     ETMGDMTKHGQRLLVAKGGWHGLGNTRFKSSVNRTPRQKTNGTPGDKRDLLLELMLLA
                     DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDSEKSFVVADIPGLI
                     EGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGSDPVENARIIIGELEKYSQDLAAK
                     PRWLVFNKIDLMDKSEAEEKAKAIAEALGWEGKYYLISAASQLGVKDLCWDVMTFIIE
                     NPIAQAEEAKQPEKVEFMWDDYHRQQLAEVEEDADDDWDDDWDEDDEEGVEFIYKR"
     gene            complement(30871..31836)
                     /locus_tag="OQP62_000276"
     CDS             complement(30871..31836)
                     /locus_tag="OQP62_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012135318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1719922.1"
                     /translation="MKQQAGIGILLALTTAMCWGALPIAMKQVLEVMEPSTIVFYRFL
                     MASIGLGAILAVKRKLPPLRIFRKPRWLVLLAIATCGLFGNFILFSSSLQYLSPTASQ
                     VIGQLSPVGMMVASVFILKEKMRGTQVIGALMLLSGLVMFFNTSLIEIFTRLTDYTWG
                     VIFGVGAAMVWVSYGVAQKVLLRRLASQQILFLLYTLCTIALLPLAKPMVIAQLSDWQ
                     LACLIFCGLNTLVGYGALAEAMARWQAAQVSAIITLTPLFTLLFSDLLSMAWPDFFAR
                     PMLNLLGYLGAFVVVAGAMYSAIGHRIWGGLRKHETVVSQPRSGE"
     gene            complement(31966..32223)
                     /gene="rpmA"
                     /locus_tag="OQP62_000277"
     CDS             complement(31966..32223)
                     /gene="rpmA"
                     /locus_tag="OQP62_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HCS1719923.1"
                     /translation="MAHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTK
                     FHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE"
     gene            complement(32243..32554)
                     /gene="rplU"
                     /locus_tag="OQP62_000278"
     CDS             complement(32243..32554)
                     /gene="rplU"
                     /locus_tag="OQP62_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015960603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HCS1719924.1"
                     /translation="MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETIEFAEVLMIANG
                     EEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGIS
                     A"
     gene            32813..33784
                     /gene="ispB"
                     /locus_tag="OQP62_000279"
     CDS             32813..33784
                     /gene="ispB"
                     /locus_tag="OQP62_000279"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HCS1719925.1"
                     /translation="MNLEKINELTAQDMAGVNATILEQLNSDVQLINQLGYYIISGGG
                     KRIRPMIAVLAARAVGYQGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAA
                     FGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITE
                     ENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSA
                     DGEHLGKNVGDDLNEGKPTLPLLHAMRHGTPEQSAMIRTAIEQGNGRHLLEPVLEAMT
                     TCGSLEWTRQRAEEEADKAISALQILPDTPWREALIGLAHIAVQRDR"
     gene            34017..34304
                     /gene="sfsB"
                     /locus_tag="OQP62_000280"
     CDS             34017..34304
                     /gene="sfsB"
                     /locus_tag="OQP62_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator SfsB"
                     /protein_id="HCS1719926.1"
                     /translation="MESKLIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALTR
                     PWPKGELIIAKALGTEPWVIWPSRYHDPRTHEFIDRTRLMRARNKDKQNVE"
     gene            complement(34363..35622)
                     /gene="murA"
                     /locus_tag="OQP62_000281"
     CDS             complement(34363..35622)
                     /gene="murA"
                     /locus_tag="OQP62_000281"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HCS1719927.1"
                     /translation="MDKFRVQGPTTLQGEVTISGAKNAALPILFAALLAEEPVEIQNV
                     PKLKDVDTSMKLLSQLGAKVERNGSVHIDASQVNVFCAPYDLVKTMRASIWALGPLVA
                     RFGQGQVSLPGGCTIGARPVDLHITGLEQLGATIKLEEGYVKASVEGRLKGAHIVMDK
                     VSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLVTLGAKIAGQGTDRITIEGV
                     ERLGGGVYRVLPDRIETGTFLVAAAISRGKILCRNAQPDTLDAVLAKLRDAGADIEVG
                     EDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMH
                     VPELSRMGARAEIESNTVICHGVETLSGAQVMATDLRASASLVLAGCIAEGTTIVDRI
                     YHIDRGYERIEDKLRALGANIERVKGE"
     gene            complement(35676..35930)
                     /gene="ibaG"
                     /locus_tag="OQP62_000282"
     CDS             complement(35676..35930)
                     /gene="ibaG"
                     /locus_tag="OQP62_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417657.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family iron metabolism protein IbaG"
                     /protein_id="HCS1719928.1"
                     /translation="MENHEIQSVLMNALSLQEVHVSGDGSHFQVIAVGEMFDGMSRVK
                     KQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF"
     gene            complement(36118..36414)
                     /gene="mlaB"
                     /locus_tag="OQP62_000283"
     CDS             complement(36118..36414)
                     /gene="mlaB"
                     /locus_tag="OQP62_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance protein MlaB"
                     /protein_id="HCS1719929.1"
                     /translation="MTPQLTWTREADTLVLAGELDQDVLAPLWDARVEAMNGVTRIDL
                     SQISRVDTGGLALLAHLVNQAKKQGNAVSLSGVNDKVYALAQLYNLPEDVLPRM"
     gene            complement(36414..37049)
                     /gene="mlaC"
                     /locus_tag="OQP62_000284"
     CDS             complement(36414..37049)
                     /gene="mlaC"
                     /locus_tag="OQP62_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HCS1719930.1"
                     /translation="MFKRLMMVALLVIAPLSAATAADQSNPYKLMNEAAQKTFDRLKN
                     EQPKIRANPDYLRDVVDQELLPYVQVKYAGALVLGRYYKEATPAQREAYFAAFREYLK
                     QAYGQALAMYHGQTYQIAPEQPLGDATIVPIRVTIIDPNGRPPVRLDFQWRKNTQTGN
                     WQAYDMIAEGVSMITTKQNEWSDLLRTKGIDGLTAQLKSISQQKITLDEKQ"
     gene            complement(37068..37619)
                     /gene="mlaD"
                     /locus_tag="OQP62_000285"
     CDS             complement(37068..37619)
                     /gene="mlaD"
                     /locus_tag="OQP62_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HCS1719931.1"
                     /translation="MQTKKNEIWVGVFLLVALLAALFVCLKAANVTSMRTEPTYKVYA
                     TFDNIGGLKVRSPVRIGGVVVGRVEDISLDPKTYLPRVTLDIEERYNHIPDTSSLSIR
                     TSGLLGEQYLALNVGFEDPELGTSILKDGSTIQDTKSAMVLEDMIGQFLYNSKGDDNK
                     NSGDAPAATEGHTEATTPAGETK"
     gene            complement(37624..38406)
                     /gene="mlaE"
                     /locus_tag="OQP62_000286"
     CDS             complement(37624..38406)
                     /gene="mlaE"
                     /locus_tag="OQP62_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014071945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HCS1719932.1"
                     /translation="MLLNALAALGHSGIKTVRTFGRAGLMLFNAIIGKPEFRKHAPLL
                     VRQLYNVGVLSMLIIIVSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPV
                     VAALLFAGRAGSALTAEIGLMRATEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTI
                     IFVAVGIWGGSLVGVSWKGIDAGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWIAL
                     FNGYDAIPTSAGISRATTRTVVHASLAVLGLDFVLTALMFGN"
     gene            complement(38414..39226)
                     /gene="mlaF"
                     /locus_tag="OQP62_000287"
     CDS             complement(38414..39226)
                     /gene="mlaF"
                     /locus_tag="OQP62_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid ABC transporter ATP-binding protein
                     MlaF"
                     /protein_id="HCS1719933.1"
                     /translation="MGQSAANLVDMRDVSFCRGERCIFDNISLTVPRGKITAIMGPSG
                     IGKTTLLRLIGGQIPPDKGEILFDGENVPAMSRSRLYTVRKRMSMLFQSGALFTDMNV
                     FDNVAYPLREHTNLPAPLLKSVVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA
                     LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWIM
                     ADKKIVAHGSAQALQENTDPRVRQFLDGIADGPVPFRYPAGDYHLDLLETGS"
     gene            39439..40416
                     /locus_tag="OQP62_000288"
     CDS             39439..40416
                     /locus_tag="OQP62_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HCS1719934.1"
                     /translation="MLLAMALLIIGLLLVAYGADRLVFAASILCRTFGIPPLIIGMTV
                     VSIGTSLPEIIVSVAASLHGQLDLAVGAALGSNITNILLILGLAALVRPFTVHSDVLR
                     RELPLMLFVSVVAGSVLHDGQLSRSDGIFLLLLAVLWLLFIVKIARLAERQGNDSLTR
                     EQLAELPREDGLPVAFLWLGIALVIMPMATRMVIDNATVLANYFAMSELTLGLTVIAV
                     GTSLPELATAIAGVRKGENDIAVGNLIGANIFNLAIVLGLPALIAPGEINPLAFGRDY
                     SVMLLVSVVFALLCWRHPRQIGRGAGILLTGGFIVWLAMLYWLSPLLVG"
     gene            40430..41416
                     /gene="kdsD"
                     /locus_tag="OQP62_000289"
     CDS             40430..41416
                     /gene="kdsD"
                     /locus_tag="OQP62_000289"
                     /EC_number="5.3.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-5-phosphate isomerase KdsD"
                     /protein_id="HCS1719935.1"
                     /translation="MSHLALQPGFDFQQAGKEVLEIEREGLAELDQYINQHFTLACEK
                     MFNCTGKVVVMGMGKSGHIGRKMAATFASTGTSSFFVHPGEAAHGDLGMVTPQDVVIA
                     ISNSGESSEIAALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVPKEACPLGLAP
                     TSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPH
                     VNKHATLRDALLEITRKNLGMTVICDESMKIDGIFTDGDLRRMFDMGGDMRQLGIAEV
                     MTPGGIRVRPGILAVDALNLMQSRHITSVLVADGDQLLGVLHMHDLLRAGVV"
     gene            41437..42003
                     /gene="kdsC"
                     /locus_tag="OQP62_000290"
     CDS             41437..42003
                     /gene="kdsC"
                     /locus_tag="OQP62_000290"
                     /EC_number="3.1.3.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate-8-phosphatase KdsC"
                     /protein_id="HCS1719936.1"
                     /translation="MSKAGASLATCYGPVSTHVMTKAENIRLLILDVDGVLSDGLIYM
                     GNNGEELKAFNVRDGYGIRCALTSNIEVAIITGRKAKLVEDRCATLGIVHLYQGQSNK
                     LIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTHIA
                     GGRGAVREVCDLLLLAQGKLDEAKGQSI"
     gene            42000..42575
                     /gene="lptC"
                     /locus_tag="OQP62_000291"
     CDS             42000..42575
                     /gene="lptC"
                     /locus_tag="OQP62_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HCS1719937.1"
                     /translation="MSKTRRWVIILLSLAILVLIGINLADKDDPAAVMVNSNDPTYKS
                     EHTDTVVYSPEGALSYRLIAQHVEYFSDQAVSWFTQPVLTTFDKDKVPTWSIKADKAK
                     LTNDRMLYLYGHVEVNALVPDAQLRRITTDNAQINLVTQDVTSNDLVTLYGTTFNSSG
                     LKMRGNLRSKNAELIEKVRTSYEIQNKQTQP"
     gene            42544..43098
                     /gene="lptA"
                     /locus_tag="OQP62_000292"
     CDS             42544..43098
                     /gene="lptA"
                     /locus_tag="OQP62_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide ABC transporter
                     substrate-binding protein LptA"
                     /protein_id="HCS1719938.1"
                     /translation="MKFKTNKLSLNLMLAGSLLAASIPAFAVTGDTEQPIHIDSDQQS
                     LDMQGNVVTFTGNVVMTQGTIKINADKVVVTRPGGEQGKEVIDGYGNPATFYQMQDNG
                     KPVKGHASHMHYELAKDFVVLTGNAYLEQLDSNITGDKITYLVKEQKMQAFSEKGKRV
                     TTVLVPSQLQDKNKGQTPAQKKSN"
     gene            43105..43830
                     /gene="lptB"
                     /locus_tag="OQP62_000293"
     CDS             43105..43830
                     /gene="lptB"
                     /locus_tag="OQP62_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003861862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HCS1719939.1"
                     /translation="MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTT
                     TFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVFDNLMAV
                     LQIRDDLTAEQREDRANELMEEFHIEHLRDSMGQALSGGERRRVEIARALAANPKFIL
                     LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH
                     GTPTEILQDEHVKRVYLGEDFRL"
     gene            43878..45311
                     /gene="rpoN"
                     /locus_tag="OQP62_000294"
     CDS             43878..45311
                     /gene="rpoN"
                     /locus_tag="OQP62_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HCS1719940.1"
                     /translation="MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENN
                     PLLEQTDLHDEIDTQQPQDDDPLDTADALEQKEMPEELPLDASWDEIYTAGTPSGPSG
                     DYIDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVSLDE
                     IRESMGDVEVDLDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKSTPWLEEARL
                     IICDHLDLLANHDFRTLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDV
                     LVRKHNGRWTVELNSDSIPRLQINQHYAAMCNSARNDADSQFIRSNLQDAKWLIKSLE
                     SRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHS
                     PRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG
                     IMVARRTVAKYRESLSIPPSNQRKQLV"
     gene            45334..45621
                     /gene="hpf"
                     /locus_tag="OQP62_000295"
     CDS             45334..45621
                     /gene="hpf"
                     /locus_tag="OQP62_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome hibernation promoting factor"
                     /protein_id="HCS1719941.1"
                     /translation="MQLNITGHNVEITEALREFVTTKFAKLEQYFERINQVYVVLKVE
                     KVTHISDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQY"
     gene            45739..46230
                     /gene="ptsN"
                     /locus_tag="OQP62_000296"
     CDS             45739..46230
                     /gene="ptsN"
                     /locus_tag="OQP62_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS IIA-like nitrogen regulatory protein PtsN"
                     /protein_id="HCS1719942.1"
                     /translation="MINNDTTLQLSSVLNQECTRSGVHCQSKKRALEIISELAAKQLS
                     LPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQ
                     PVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAALNDEELYQIITDTEGEQ
                     NEA"
     gene            46276..47130
                     /gene="rapZ"
                     /locus_tag="OQP62_000297"
     CDS             46276..47130
                     /gene="rapZ"
                     /locus_tag="OQP62_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HCS1719943.1"
                     /translation="MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTL
                     ADRQISAAVSIDVRNIPESPEIFEQAMNNLPGAFSPQLLFLDADRNTLIRRYSDTRRL
                     HPLSSKNLSLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKREREL
                     TMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNF
                     IYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRH
                     RTLEKRKT"
     gene            47127..47399
                     /gene="npr"
                     /locus_tag="OQP62_000298"
     CDS             47127..47399
                     /gene="npr"
                     /locus_tag="OQP62_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000216792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS phosphocarrier protein NPr"
                     /protein_id="HCS1719944.1"
                     /translation="MTVKQTVEVTNKLGMHARPAMKLFELMQGFDAEVLLRNDEGTEA
                     EANSVIALLMLDSAKGRQIEIEATGPQEVEALAAVIALFNSGFDED"
BASE COUNT        10978 a        13421 c        12078 g        10972 t
ORIGIN      
        1 aagcgaggcc agcgtcacca ttgataaggc tattgatgac gttcgtcccg acgagttcga
       61 cgccttgcta ttgccgggag gtcattcgcc ggactacctg cgcggcgaca gccgtttcgt
      121 ggattttacc cgcgatttcg ttaacagcgg taaaccggtt tttgccattt gccacggccc
      181 gcagttgttg atcagcgccg atgtcattcg tggccgcaaa ctcacggcgg tgaaaccgat
      241 tattatcgat gtgaagaatg cgggcgcgga attttacgat caggaagtcg tcgtcgataa
      301 agatcagctg gtgaccagcc gcacgcctga cgacctgccg gcatttaacc gcgaggcgct
      361 acgcctgctg ggcgcgtgag tcacgtaacc agtgcagttt tttaccaaac cccagcgtgt
      421 tgtcggtgaa tttaatttca tccagccgaa tttcccatac cggcgctggc agcaccctgg
      481 cgaccgggaa gcgacgaagg taagctttac gcgcggcgtc gctctcctgc ccctccagac
      541 ggcgaatttc ccctttaaac tgcacgccgc gaatgcgcgc caccgttttc ggctgaccat
      601 tgaccgttcc cgcaactggc gcgcacgcgc cggacatttg cgcatggcgg gttttatcat
      661 ccgttaacag atacagcgcg acgttttgcg catcgaacaa ataaaacgca ttggcgcacc
      721 acagctctcc ctcatggtgt acgcaccagg tcaccacgtg ttgtttcgcc agccaacggc
      781 caatagcggt aagtgtgtcc atctttattc tcgcttatac tgggaacctg aaaattatca
      841 tgctgatggc gacaatgaca ccctggtatc tgtatctgat tcgtactgca gacaatgcgc
      901 tttacaccgg aataaccacc gatgtggcgc gtcgttacag gcagcatcaa acgggaaaag
      961 gcgcaaaagc attacgggga aaaggcgagt taacgctggc gtttgcggcg caggtcggcg
     1021 atcgctcgct ggccctgcgc atagagtatc gcatcaaaca gctcacaaag cgccagaagg
     1081 agcgccttgt gacggaacgc gaagcgtttg aggcgctgct gtccagcctg caaacgccgg
     1141 tgcttaaaaa cgattgaagt ggtcgtgata ctccaccagc cccgtcacgc cctccagcgc
     1201 atcctcagcc aaacggtgta cctggaaagc gctttccgta ccgggccaac ggcagtgaag
     1261 atcgtaatgt gcggccagtt caaaaccgaa gcggctatat aacgccgggt cgcccagcgt
     1321 cacgaccgcc gcgtagccga actcgttgag cgaatccagc ccttcataca ctaactggcg
     1381 cgccagccct tgcccgcgat acttttcatc gaccgccagc ggcgccatgc cgacccactg
     1441 taaatcttcg ccctgcacat caaccgggct aaaggcgaca tagcccacta cctggccttc
     1501 atcatccgtg gccaccagtc cgagcgtcag aaaaccatct tcacgcaaat cgtgaaccag
     1561 cttcgcttcc gcatcgcttt cgaatgaacg gcgtaacagc gcatcaatac caggcgcatc
     1621 aatgggaatt tctactcgaa ttagcatggt tcacctaccg aggtctgttt ggtttccggc
     1681 gagtttttca ttcccgcctc aacaaaatcc gccagttgca gcagcataat gcgtaacgct
     1741 ttcggcatct gctccagttc gatggcgtcc atcagattct tcacatacaa ccctaactca
     1801 gtatcgcctt caatgaccag tcgacgctgg aaaaagagcg tatccggatc ctgtttacgg
     1861 gcggcgatca ttagcagatc gctggcgtcg gcgctaaaac tgacgtcagc atccgcctgc
     1921 tggctaacga tcagcttttc attttcaacc gtggtatacc attttaagtc gatgtcacga
     1981 acatgaatgc ttaaccaacg accttcgagg aattccagct ctccatcggc cagcgcctga
     2041 cgaaactgcc agctcagaac ctgttccaga acctggcgct ttagcgcaaa gggcgtcagt
     2101 ttaaccggta cactcatcag agacgggcca gcatggacta agcgtgaacg cagtttatct
     2161 aacacgagct ttactccctg tttcaatagt cctgttattt tgccatatcc aataaatcac
     2221 atggcggcgt aaatcaacaa ttgggtctga ttttctaccc cattattggt gttaccaata
     2281 cgcctttaac tgccttaaat caaaaattgt cgcagcaagg ttaactaaaa tccctgttcg
     2341 ttaacaattt tgcgtcgcag acgtaaccct caggataaat tatggagctg ctctgccctg
     2401 ccggaaatct cccggcgctg aaggcggcca tcgaaaacgg cgctgacgcc gtttatatcg
     2461 ggttaaaaga cgataccaat gcccgtcatt ttgccggcct taactttacc gaaaaaaaat
     2521 tgcaggaagc ggtgagtttt gttcaccagc atcgccgcaa attacacatc gccattaata
     2581 cttttgcgca tccggacggc tatgcccgct ggcagcgcgc cgtggatatg gcggcgcagc
     2641 ttggcgccga cgcgctgatt cttgccgacc tcgctatgct ggaatatgcc gcagagcgtt
     2701 acccgcatat tgagcgccat gtttccgttc aggcctcggc aaccaacgaa gaagcgattc
     2761 gcttttatca ccgcaacttt gatgtccacc gtgtagtact gccgcgtgta ctgtcgattc
     2821 accaggtaaa acaactggcc cgcgtcacgc cggtgccgct ggaggtattc gcgtttggca
     2881 gcctgtgcat tatggcagaa ggtcgctgct atctttcttc ttacctgacg ggggagtcgc
     2941 ccaataccgt cggcgcctgc tctcccgccc gctttgtccg ttggcagcaa acgccgcagg
     3001 ggctggaatc gcgcctgaat gatgtcctga ttgaccgtta ccaggatggc gaaaacgcag
     3061 gctacccaac gctgtgtaaa ggccgctatt tagtggacgg cgagcgctat cacgcgctgg
     3121 aggagccaac cagcctgaac acgctggaac tgctgccgga gctcatggcg gcgaacatcg
     3181 cttcggtgaa gatcgaaggc cgccagcgca gcccggccta cgtcagccag gtggcgaaag
     3241 tgtggcgcca ggcgatagat cgctgcaaag ccgccccgca aaacttcgtt ccacagcgcg
     3301 actggatgga gacgctcggc gcgatgtccg aaggcactca aaccacgctt ggcgcatatc
     3361 accgtaaatg gcagtgagag gagctatgaa atattcctta ggaccggtgc tttattactg
     3421 gccgaaagag acgctggaag atttttatca gcaggccgca aaaagcagcg ctgatatcat
     3481 ttatctgggc gaagcggtgt gcagcaaacg tcgcgcgact aaagtcggcg actggctgga
     3541 aatggcgaaa tccctcgctg ccagcggtaa gcaggtggcg ctctccaccc tggcgctggt
     3601 acaggcgtca tctgaattaa gcgagctgaa acgctatgtg gacaacggcg attttctgct
     3661 ggaagccagc gatcttggcg tggtgaatct gtgcgccgag cgcaaactgc cgtttgtcgc
     3721 cggccatgcg ctgaattgct acaacgcggt cacgctgcgc cggttgctga aagaaggcat
     3781 ggtacgctgg tgtatgccgg tggagctctc ccgcgactgg ctggtgaatt tgcttaatca
     3841 gtgcgatgaa ctgggcatcc gcaatcagtt tgaagtggaa gtgttgagct acgggcatct
     3901 gccgctggcc tactccgctc gctgctttac cgcccgttcg gaagaccgcc cgaaagatga
     3961 atgcgaaacc tgctgtatca agtatccaaa cggtcgtgac gtgctctcgc aagagaatca
     4021 gcaggtgttt gtgcttaacg gtattcagac catgagcggc tatgtctata accttggcaa
     4081 cgaactgacg tcgatgcagg gattggtcga tatcgtgcgg ctgtcgccgt tggggacgga
     4141 gacatttgcc atgcttgatg cctttcgcgc taacgaaaac ggcggcgcgc cgttaccgct
     4201 tgccgcccat agcgactgta acggctactg gaagcggctg gccgggctgg agctacaggc
     4261 ctagccggat ggcagcatca ataccttatc cggcctacaa atagcgctcc cgaaggcccg
     4321 ataagcgcag cgccatcggg cattgttttt gccattagtc tcataaagct cactttgtta
     4381 acaacattcg ctaatcttta atgcagtatt aaaagattaa tcggtaacaa agtgagccgt
     4441 tatgactgac aaaactattc cgttctcggt gctggatctg gcgccgatcc ctgaaggatc
     4501 ttcggcaaaa gaagccttca cgcactcgct tgatctcgca cggctggctg aaaagcgtgg
     4561 ctatcaccgc tactggctgg cggaacatca caacatgacc ggtatcgcca gcgcggcgac
     4621 ctcggtattg attggttatc tggcggccaa taccacaaca ttacatcttg gctccggcgg
     4681 cgtgatgctg cctaaccatt caccgctggt gattgccgag cagttcggca cgctgaatac
     4741 gctctacccg ggacgtatcg acttaggatt gggacgcgcg ccgggtagcg atcagccgac
     4801 gatgcgcgcg ctgcgtcgcc atatgagcgg cgatatcgat aactttccac gcgatgtcgc
     4861 agagctggtg gactggttcg acgctcgcga tcctaatccg catgtgcgcc cggtgcccgg
     4921 ctacggcgag aagatcccga tctggctgtt gggctccagc ctgtatagcg cgcaactggc
     4981 ggcccagctt ggcctgccgt tcgcctttgc ttcgcatttc acgccggata tgttgttcca
     5041 ggcgctgcat ctgtaccgta ctcagttcaa accttcagcg cggctggaaa aaccgtacgc
     5101 gatggtgtgt atcaatatta tcgccgccga cagcaaccgc gacgccgaat tcctgtttac
     5161 ctccatgcag caggcttttg tgaagctacg ccgtggagaa accggccaac tgccgccgcc
     5221 gattgagaat atggaaacct tctggtcgcc atccgagcag tatggcgtgc agcaggcgct
     5281 gagtatgtcg ctggtcggcg ataaagcgaa agtccgccac gggctggtgt ccattctgcg
     5341 ggaaacccag gcggatgaaa ttatggtaaa cgggcagatt ttcgaccacc aggcacgcct
     5401 gcattcgttt gatttagcga tggatgtgaa gcaggaattg ttggggtagc gcattgtttt
     5461 gcccggtggc gcttcgctta ccgggcctac agcatcaagt aggccggata aggtgcaacc
     5521 gccatccggc acaataacgt tactggtaca ccggcagcaa attaaagctc gacagaatat
     5581 ggataaccgc gttgccgaca ccgaagacca gaatcagggc aatcatcggt ttaccgcccc
     5641 agacgcgaaa ttttgggctg ccgaaacgtt cgcgagattt gcgcgccaac agcgcaggca
     5701 caatggccgc ccagatagtt gcagctaaac ctgcatagcc aatggcgtac agaaaaccgt
     5761 tcgggtacag caggccacca atcatcggcg gcaggaaagt cagcagcgcc gttttaaaac
     5821 gtcccattgc cgagtcatca aaaccaaaca gatccgccag atagtcaaac agccccagcg
     5881 tcacgccaag gaaggaactg gcgaccgcaa agttagagaa caccaccagc agcagatcca
     5941 ggctgcggct gttcagcacg ccgctcaacg cctgtaccag cacatcaata ttgccgcctt
     6001 tctgcgcaat gccgataaat tccggacgtg ggatgttgcc catcgtcccc agcagccaga
     6061 cggaatagag cgccagcgcc agtaacgtcc cataaatcag gcatttcacg atggtgcgcg
     6121 gatctttgcc gtaatatttc atcaggctcg gtacgttacc gtgataacca aaagaggcca
     6181 gacaaaatgg cagcgtcatc agcaggtacg gcgtatatga cgcgtggctt tcagccacgt
     6241 taaacaacgt ggtcggctga acgtgcccta acaggctgcc gaaggtcagg aagaaagtaa
     6301 tcactttcgc gcccagcaca atcgccgtca tccggctgac cgccttcgta ctcagccaca
     6361 cgacaaacgc caccagcagc gcaaaggcaa aacctgccgc tcgcgccgga acgttcagcg
     6421 acatctcagc aaaggtatga tgcagaattg agccgctcgc cgagatatag gcgtaagtca
     6481 ggatgtagag cacaaaggca atagagatgc catttaccac gttccagcct ttccccaaca
     6541 gatctttggt gatggtgtcg aaactcgaac caatgcggta gttaaggtta gcttcgagga
     6601 tcatcagccc ggagtgcagc atacaaaacc aggtaaagac cagcgccgcc atcgaccaga
     6661 agaaccacgc cccggacatg accaccggca gggagaacat ccccgcgcca atgatggtgc
     6721 cgccgataat caccacgccg ccaagcagcg aaggtgacgt ttgggtggtg gtaagtgttg
     6781 ccattcagct ctctctccag tcatttatag tgtgactatc tctcaatacg ttgcactgta
     6841 ccagtacacg agtacaaaag aaataaaaaa agccccgatt gtgacgatcg gggctgtata
     6901 ttttacttta cgctgtgaat gcgcaggtca gcgtgagtta cgcatcaccg ccgaaacgac
     6961 ggcgaccggt agagtcatca cgacgcggac cacggctttc acgacgttcg ccgctgaagc
     7021 gacgaccatc accacgacca ccttcacgac gttcgccgct gaaattacga ccgccttcac
     7081 gacgttcgcc actgaagcta cgaccaccgc cgcgacgttc gccgcccgcg tgcggaaccg
     7141 catcacccaa cagctgcata ttcatcggct tgttcagaat gcgagtacgc gtgaagtgct
     7201 ggagcacttc gcccggcata cctttcggca gctcgatggt ggagtgagac gcgaacagct
     7261 taatgttacc aatgtaacgg ctgctaatgt cgccttcgtt agcgatagcg cccacgatat
     7321 gacgaacttc aacgccgtca tcacggccca cttcaatgcg gtataactgc atatcgccaa
     7381 cgtcacgacg ttcacgacgc ggacgttctt cacgatcgcc acgcgggcca cggtcattac
     7441 gatcgcgcgg accacggtcg tcacggtcac ggaattcacg cttaggacgc atcggcgcat
     7501 ccggcggcag aatcagcgga cgctcgccct gcgccatttt cagcagtgcg gcggccagcg
     7561 tttcgagatc cagctcttca ccttcggcag acggctggat tttcgccagc agcgcacggt
     7621 actgatccag atcgctgctt tccagttgct gctgaacttt cgcggcgaat ttttccagac
     7681 ggcgtttacc cagcagttct gcgttcggca gttccacttc tggaatggtc agcttcatgg
     7741 tgcgttcgat gttgcgcagc agacgacgct cgcggttctc aacgaacagc agcgcgcgac
     7801 cggcgcgacc cgcacgaccg gtacgaccga tacggtgaac gtaggactcg gagtccatcg
     7861 gaatatcgta gttcaccacc aggctgatac gttcaacgtc cagaccacgt gccgcaacat
     7921 cggtggcgat caggatgtcc agacgaccat ctttcaggcg ttccagagtc tgctcacgca
     7981 gcgcctggtt catatcgcca ttcaacgcgg cgctgttgta gccgttacgt tccagcgctt
     8041 ctgctacttc cagggtcgcg tttttggtac gtacgaagat aatcgccgca tcaaagtctt
     8101 ccgcttccag gaaacgcacc agtgcttcgt ttttacgcat accccagaca gtccagtagc
     8161 tctggctgat gtcaggacgg gtagtcacgc tggactgaat gcgcacttcc tgcggctctt
     8221 tcataaagcg gcgggtaatg cgacgaatcg cttccggcat ggtggcggag aacagagcgg
     8281 tttgatgacc ttccgggatc tgcgccataa tagtttcaac gtcttcgatg aagcccatac
     8341 gcagcatttc gtcggcttca tccagcacca gaccactcag tttagagagg tcgagggtgc
     8401 cgcgttttaa gtgatcaagc agacgtcccg gcgtaccgac aacgatctgc ggcccctgac
     8461 gcagggcgcg taactgcacg tcataacgct gaccgccgta cagggcaacc acgtttacgc
     8521 cgcgcatgtg tttagagaaa tccgtcatgg cttcggcaac ctgtaccgcc agttcgcggg
     8581 ttggcgccag caccagaatc tgaggtgcct tcagctcagg atcaagattg ttgagcagcg
     8641 gtaaagagaa cgctgcggtt ttgccgctac cggtctgggc catgcccagc acgtcgcgac
     8701 cgcccagcag atgcggaatg cactctgcct ggattggaga tggtttttcg taacccagat
     8761 cggtaagggc ttcaaggata ggagccttca gccccagatc tgcaaaagtg gtttcgaatt
     8821 cagccatgta gtacgtgtgc ctcaaaatta atggcggcca gtctacataa ctcatcatga
     8881 aattgatctg caattttcat tgaaaagtgt gaaccggctc aaagtaggtg tattaacgaa
     8941 caacaacgcc ctcacccgcg aaggtgatgg caatcaaaaa gattacgggc tgatatgttc
     9001 gtcagctatt gctggtccga ttctgccagg tcatcttggt cctggcccag gagcgataat
     9061 tccaacaatg cgtatcggtg ctcaacaaag ttatgaacgt tgttggccac cgccagtttg
     9121 aacagagccg tggcgctgtc caaatccccc agacttaggt aatacttacc taaatagaag
     9181 ttggtttcac tgagatgctc agcgagcgag gtgttatccg ttgcgtccgc cttgagcctt
     9241 tccatcagcg ttgcttcgct aatgtcgccc aggtagaact cgacaatgtt ccatccccat
     9301 tgctctttat ccgatttttc gaagcgtgct tttaacgctt ctttcgcctg cttctcatta
     9361 agcttctgct caacaagata cagccacagg ctgcggtaag gatcattggg atcgtcttga
     9421 taaaacgcca gcagatcatc ttgcgctaac ttatcacggc cgccgtaata caatgcgata
     9481 ccgcggttta agtgcgcgta gttgtaagtt ggatcaagct ctagtacaga atcaaacgct
     9541 tcataggcag catcaaaatt gcctgcctgc gttaaataaa tgcctaagta attgaatact
     9601 tcaggcatat ccggtctgat tgccagcgct tgtgaaaaat catttcgcgc taatgccctc
     9661 aaaccaagac tatcatacaa cactccgcgc tcatataaaa gctgtgcgcg ttcgtcatcg
     9721 gttaaagccc gactggcaag aatctgttcc atacgcgcca gaatcacttc ctgctgtaaa
     9781 gtcggttgca atggtactgc gaggacttca cttttacgcc aggcggaatt actgcatcct
     9841 gcaagcgtaa gtgctgtcgc aacgaaacac cagcgcaaaa aaggcttcat ttcccactcc
     9901 cgaagacaac gattgaatga acgtcctgtt ccccggtggc tcaacaaggc gtccagccag
     9961 gtctaaagcc ccccgcactg cggagggcaa aaggctacct tactcggcct gttcgctcgc
    10021 cggagcttcc ggcgcagccg caggttgaga ctgctcggtt gcttctttaa tgctcagacg
    10081 tacacggccc tggcggtcaa cttccagaac cttaaccggg acttcctgac ccatctgcag
    10141 ataatcggtc actttctcta cacgcttatc cgcgatttga gagatgtgaa ccagaccttc
    10201 tttaccgccg ccgatggcaa caaacgcgcc aaagtcaacg atacgggtca ctttactatt
    10261 gtagatacgg ccgacttcga tctctgcggt gatctcttcg atacgacgga tagcgtattt
    10321 cgctttttca ccgtcggtcg ccgcgatctt cacagtaccg tcatcttcaa tttcgatggt
    10381 ggtgccggtc tcttcagtca gcgcgcggat cacagaaccg cctttaccga tcacgtcttt
    10441 gatcttgtcc gtgctgatct tgatggtatg gatacgcggc gcaaattcag agatatcgcc
    10501 gcgcggcgcg ttgatcgcct gttccatcac gcccaggatg tgcagacgcg cacctttagc
    10561 ctggttcaac gcaacctgca tgatctcttt ggtgatacct tcaattttga tatccatctg
    10621 cagcgcagag ataccgtcgc gggaacccgc cactttgaag tccatatcgc ccaggtgatc
    10681 ttcgtcgccc agaatgtcag acagtacaac gtagttgtcg ccttctttca ccagacccat
    10741 agcgatacct gctacggcgg ctttaattgg cacgccagcg tccatcagcg ccagagaagc
    10801 gccgcacacg gaagccatag aagaagaacc gttggattcg gtgatttcag acaccacgcg
    10861 aacggtgtac gggaatttat ccatgtccgg catcactgcc agcacgccgc gcttcgccag
    10921 acgaccgtga ccaatttcac gacgcttcgg agaaccgacc atgccggttt cgcctacgga
    10981 gtacggaggg aagttgtagt ggaacaggaa gctgtcagtg cgctcgccca tcagttcatc
    11041 aagcacctgc gcgtcacggg cagtacccag agtcgcggta accagcgcct gcgtttcacc
    11101 acgggtaaac agagcggaac cgtgagttcg cggcagtacg ccagtgcgca cgtccagacc
    11161 acggatcatg tctttttcac ggccatcaat acgcggctcg cctgccagta cgcggctacg
    11221 taccacgttt ttctcgatgg cgtgcaggat ttcacccagc tcgttagcat ccagagtttc
    11281 atcttctgca ataagctgct cgatggtttc ggatttgatt acgtcaacct gagcatagcg
    11341 ctcttgttta tcggtgatgc ggtacgcgtc gctcagacga gattcagcca gcgcagcaac
    11401 acgcgcgttc aacgcgtcgt tgacggcttc cggctgccag tcccaacgcg gtttaccggc
    11461 ttctttcacc agatcgttga tcgcctggat aacaacctgc tgctgctcgt gaccgaatac
    11521 caccgcgccc agcatagtgt cttcgctcag cagttcagct tcggattcca ccatcagcac
    11581 agccgcttcg gtaccggcaa ccaccaggtc cagcttgctt tctttcagct cgtcctgggt
    11641 cgggttcagt acgtactggt cattgatgta acctacgcgc gccgcgccga ttgggccgtt
    11701 gaacggaatg ccggacagcg acagcgcagc ggatgcgccg atcatcgcca cgatatccgg
    11761 gttaacctgc gggttaacgg aaacgacggt cgcaataacc tgcacttcgt taacgaaacc
    11821 ttccgggaac agcggacgaa ccgggcggtc aatcagacgc gcgatcaggg tttcgccttc
    11881 gcttggacgg ccttcacgac ggaagaagct gcccgggata cgaccagcag cgtaggtacg
    11941 ctcctgatag ttaacggtca gtgggaagaa gtcctggcct ggcttggctt ttttctggcc
    12001 gacaacggta acgaatacgg cggtgtcatc catgcttacc ataacagcgg cagtggcctg
    12061 acgcgccatc atgccagttt ccagcgtaac ggtatgctgg ccgtactgga attcacgaac
    12121 gatcggatta agcaaaataa tatcctttcc aatttttgac ggcacaatac gcgccgtcgt
    12181 taatacccga tcttctgcgc atcctcgcga ctaatgacaa ccctaaccct gatatgggta
    12241 aagcctctca ttagccgcgc gaacctctgc aacggaagat cattcatagc aacaatacat
    12301 tagtttccag cgaattgctg ccatctgctg gaaaaaaggg gccatgaagg ccccctcttt
    12361 ctgaaactcg aaagaattag cgacgcagac ccagacgctc aatcagcgcg gtgtagcgtg
    12421 caacatcttt acgtttcagg tagtcgagca gtttacgacg ctgagaaacc atacgcagca
    12481 gaccacgacg gctgtggtga tcttttttat gctctgcaaa gtgaccctgc aggtggttaa
    12541 tctgtgcagt caacagagca acctgaacat cggtagaacc ggtgtcgttt gcgtcacgac
    12601 cgaactcaga aacgatttta gctgtagctt cagtacttag agacatttta aaactccaaa
    12661 gtatttaaga atgagaggac gccgatctct aattcagcga tcccagtgta cgccgcgtaa
    12721 actgttaaat aatttacgcg acgttaagcg gcggtattct actcgcagcg ctctcttatc
    12781 gcaagacgaa gcgacattac gccgggtact ctactaccag ccgacgaggc gcgacacggc
    12841 cttcgtcgtc aatttcgccc ataccgataa atttatcgtc ttcaccttcc gtcacacgaa
    12901 ccagtccctt caacggcgcg cccgtggtac gaaccgggtt gccatttttg aagtataccg
    12961 aagatgttaa cggcagatta acaacaggat agtccgaagc cggactatcc attggcatca
    13021 ataatggatc gagcaactgc gccgccggaa cgccctgctg ttccgcctgt gctaccagcg
    13081 tctgcaagtg ctccagcgtc accatacgat ccaccggata cttgctgacc gtcagacgac
    13141 gcaggtacgt tacgtgcgcg ccacagccca gtttctcacc taaatcatca ataatagtgc
    13201 gaatataggt gcctttggag caatgaactt ccagctccag ctcgttacct tcatggcgaa
    13261 taaacagcag ctcatagacg gtaatcgggc gggcttcgcg cggcacttcg ataccctggc
    13321 gggcatattc gtacagcttc ctgccctgat acttcagcgc cgaatacatc gagggaatct
    13381 gttcgatatc cccacgaaag gtctccagcg cgctcgcaag ctgctcagcg ctgaaagtca
    13441 ccggacgctc ctgcacgatt tgaccatcgg cgtcagaggt atctgtgcgc tgccccagac
    13501 gggcaataac acgatagcgt ttgtcagaat ccagcaagta ctgcgaaaat tttgtcgctt
    13561 cgccgaggca aatcggcaac atgccggtcg ccagcgggtc cagcgcgccg gtatgcccgg
    13621 cgcggttggc attgtagatg cgcttaactt tctgcagcac gtcattgctg gacataccct
    13681 gcggcttatc cagcaacaga acgccgtgaa tgtcgcggcc acgacgacga ggacgactca
    13741 tcagtcctcc ttgctgtcgt ccgggttcac acgacgttct tcgtcatgtt tcaccacgtt
    13801 agtcaccagg ttggacatac gcatcccttc caccagcgag ttatcgtaga agaaggttag
    13861 ttccggcacg atgcgcagac gcatcgcttt acccagcaag ctgcggatga aaccagacgc
    13921 ttcctgcagg gccttaatgc cgtttttcac agccgcttcg tcctgatcgt tgaggaacgt
    13981 cacgaatact ttggcgtatg ccagatcgcg ggacatttca acacccgata cggtggtcat
    14041 catacctaca cgtggatctt tgatttcgcg ttgcaggatg agcgcgatct ctttctgcat
    14101 ctcttgcgct acgcgctgcg ggcgaccaaa ttctttcgcc ataataaatt ctccagaata
    14161 aagacaaaaa aggggccata agcccctttt taaatttctt gccgggtggc gcttcgctta
    14221 cccggcctac gcctaatcat cttctaagga ttttggattg caacaaggcg gcaagctcgt
    14281 aaatccccgg gagcatagat aactatgtga ccggggtgag cgagcgcagc caacgccgtt
    14341 gcggcccaaa agacgacgaa gattaagcga tggtacgttg gatctcgata atctcgaaca
    14401 cttcaatcat atcgccaacg cgaacgtcgt tgtagttctt cacgccgata ccacattcca
    14461 tgccgttacg gacttcgtta acgtcatctt tgaagcggcg cagggattcc agctcgcctt
    14521 catagataac cacgttgtcg cgcagtacgc ggattggatt atggcgttta attgtacctt
    14581 cggtaaccat acagcccgcg atcgcgccga atttcggcga tttgaacaca tcgcgcactt
    14641 cagccagacc gatgatctgc tgtttcagtt ccggagacag catgccgctc atcgccgctt
    14701 tcacttcgtc gatcaagtta tagatgacgg agtagtaacg cagatccaga ctttcggatt
    14761 caatcacttt acgcgcagaa gcatcagcac gaacgttgaa gcccaccaga atcgcgttgg
    14821 acgccgcagc cagggtcgcg tcggtttcgg tgataccacc tacgccagaa ccgatgatct
    14881 tcactttcac ttcgtcggta gacagtttca gcaaggagtc ggagatcgct tccacggaac
    14941 cctgtacgtc agccttcagc acgatgttca cttcgtgaac ttcgccttcg gtcatgttga
    15001 cgaacatgtt ctcgagttta gatttctgct gacgagccag tttaacttca cggaatttac
    15061 cctgacgata cagagcaact tcacgcgctt tcttctcgtc gcgaaccacg gtcacttcgt
    15121 caccggcagc cggaacgccg gacaggccga ggatttccac cggaatggac ggacccgctt
    15181 ccagcacttc ctgacccagt tcgttacgca tcgcacgcac gcggccgtat tcgaagccac
    15241 acagcacgat atcgccctta tgcagcgtac cttcgcgtac cagaacggta gccaccggac
    15301 cacgaccttt atccaggaag gattcgatca ccgcgccgct cgccatacct ttacgaaccg
    15361 ctttcagttc cagaacttcg gcctgcagca ggatagcgtc aagcagttcg tcgataccgg
    15421 tgcccgcttt cgcagacacg tgaacgaact ggctctcgcc gccccactct tccggcagaa
    15481 tgccgtactg ggacagttcg ttcttcacac gatccggatc cgcttccggc ttatcgattt
    15541 tgttcaccgc aaccacgacc ggcacacctg ccgctttcgc gtgctggata gcttcgatag
    15601 tctgcggcat cacgccgtcg tctgctgcaa caaccagaac cacgatatcc gttgcctgag
    15661 caccacgagc acgcatggag gtaaacgcgg cgtggcccgg ggtgtccagg aaggtgatca
    15721 tcccgttgtc agtttcaacg tggtaagcac cgatgtgctg ggtaatgcca cccgcttcgc
    15781 cagaggccac tttcgtggaa cgaatgtagt ccagcagaga ggttttaccg tggtcaacgt
    15841 ggcccatgat ggtcacaacc ggtgcgcgcg gttcagccgc agcgccggta tcacggtcgc
    15901 tcattaccgc ttcttccagt tcgttttcac gacgcaggat aactttgtgg cccatctctt
    15961 cggcaaccag ctgtgcggtt tcctggtcga tgacctggtt gatggtggcc atggcgccca
    16021 gcttcatcat cgctttgatg acctgagaac ctttcaccgc catcttgttc gccagttcgc
    16081 cgacggtgat ggtttcaccg atcaccacgt cacggttaac ggcctgagcg ggcttctgga
    16141 agccttgctg taaagaagac cctttacgct tgccgccttt accgccgcga accgcagcac
    16201 gcgcttcttc gcgatcggct ttggattcgg catgtttgcc ttttttcgcc ggacgcgccg
    16261 cttttgcatt acggccacga ccacgaccac cttctacttc acgatcgttt tcgtcttcgg
    16321 cctggcgcgc gtgctgagaa gtggtgacat gatagtcact ggtgtcttct actggctcag
    16381 gcgttgcggt ccatttgttt tcttccgcca tgcggcgagc ttcttctgct acacgacgcg
    16441 cttcttcttc gagtttgcga cgtgcttctt cttccgcttt acgcttcagc tctgcagctt
    16501 cattctcacg gcgggctttt tcggcctggg cggttttggt catatcgtca gtctgttgat
    16561 tgctcacttt gtctttttcc gcagcttcac gtttcgcttt ttcagcggct tcacgcttag
    16621 cttgttctgc ggcctcgcgt tcagcttttt gttgcgcctc gcgtttggcc tgttcttctg
    16681 cctcacgacg ggcttgctct tccgcttcac gctgcgcctg ctcttccgcg gccaggcgtt
    16741 cagcctcttg cggatcgcgt ttcacaaagg tgcgcttctt gcggacttcg atttgtaccg
    16801 atttactttt tccaccggta ccaggaatat tcagggtgct gcgcgtttta cgctgcagcg
    16861 tcaatttatc ggggccagaa accgcttcgc ggttcaggtg cgccagtaaa gtctgttttt
    16921 cttgtgcgga cacagagtcg tcagcagatt tccggatacc tgcatcagca aactgctgta
    16981 ccaggcgatc cacggaaacc tgtctctctg cggccagcgc ttttagggtt aaatctgtca
    17041 tgctgttcct tcctgctaca gtttattacg cttcgtcgcc gaaccagcaa atattacggg
    17101 cagccataat cagctcaccg gctttttcgt cggtcaaccc ttcgatatca gccagatcat
    17161 caatgccctg gtcggcgaga tcttccagcg tacaaacacc acgagccgcc agtttgaaag
    17221 ccatatcgcg atctaatcct tccagattca gcagatcgtc agccggtttg ttatcaccta
    17281 ggcttgcttc ctggtcctgc gccagagtgg ccagtgcgtt tttagcacgc tcgcgcagtg
    17341 cttcaacggt cggctcatca aggccgtcaa tttccagcag ttctttcatt ggcacatagg
    17401 ccagttcttc gagcgtggag aaaccttctt ctaccagaac ggtcgcgaac tcttcatcaa
    17461 tatcaagata tttagtaaag atctcgatag cggcatgtgc ttcagcctga tgtttagcct
    17521 gcaagtcatc aacggtcatt acgttgagtt cccagccgct caattgcgaa gccaagtgga
    17581 cgttctgacc attacgtccg atcgcctgcg ccagattacc ggcttcaacg gcgatatcca
    17641 tggtatgttt atcttcgtcc accacgatag acgcgacatc tgccggcgcc atcgcattaa
    17701 tgacgaactg cgccgggtta tcatcccaca gcacgatatc gatacgctca ccgcccagtt
    17761 cggtagagac cgcctgaacg cgcgcgccgc gcatccccac gcaagcgccg accggatcga
    17821 tacgcttatc gttggttttc actgcgattt tcgcacgaga acccggatcg cgagccgccg
    17881 ctttaatttc aatcacttct tcgccgattt ccggcacttc gatgcggaac agctcgatca
    17941 gcatttccgg cttggaacgg gtgacgaaca gctgcgcgcc acgcgcttcc gggcgaacag
    18001 catacagcac gccgcgaata cggtcgccag ggcggaagtt ttcgcgcggc agcatatctt
    18061 cacgcagaat caccgcttca gcgttaccgg ccatcccttc ggatttaatt tccaaagaga
    18121 tattgtcgcg gttcactttc ttcaccacgc cagtgacgat ttcgccttcc tggtcgcgga
    18181 actgatcgac aaccatcgcg cgttcagctt cacggacttt ctgcacgata acctgtttcg
    18241 cagtctgcgt ggtgatacgg tcaaaggtga cagattcaat ctgatcttca acatagtcgc
    18301 cgacattcag gctttcgtct tcaaagcgcg ccgcttccag cgtaatttcc ttcgtcggca
    18361 tggtcacttc ttcaacgatc aaccaacggc ggaaagtatc aaaatcaccg cttttacgat
    18421 cgatttctac acgaacatcg atctcctgct catatttttt ctttgttgct gtcgccagcg
    18481 cactttccag cgcttcaaaa attttttcgc gtggcagcgc tttttcgttg gagacggctt
    18541 caacaacagc caaaatttct ttgttcatcg cgggcttttc acctcatcca gactgttaaa
    18601 agtggggaac caggttcgcc ttctggatat tactcagcgc gaacacttca tctttgcctt
    18661 cgactgtgac ggtaatcatt tcaccgtcca ccgctttgat aatgccctgc cacttgcgac
    18721 ggttctgtac cgccatgcga agaaccagcg cgacctcttc accctggaaa cgcgcataat
    18781 gatcggcagt gaacatagga cggtcgagac ccggtgacga gacttcaagg ttgtaagcca
    18841 cggagatagg atcttcaacg tccagcaccg cgcttacctg gtggctcaca tcagcacaat
    18901 catcaacatt gatgccatct tcactatcaa tatagatgcg cagtgtggat gtgcgaccgc
    18961 gaataaattc gatgccgacc agctcgtagc ctaaggcttc aactggcgct gtaatcatct
    19021 ctgttaattt ttgctctaat gtggacaagc ccacccccaa gacataaaaa aagggcctaa
    19081 agcccagtta ttctgtagtc agataacaaa aaaccccgat aaatcggggc tttagataac
    19141 tgaaccctat aaccgcaacg gcggtctggt gtaccttccg aaagaatttt tttcaaatcc
    19201 agctacgaag gacataatct tcacagtata tttgaaaaag aactctaagg gaaagtggtt
    19261 gcgggggccg gatttgaacc gacgaccttc gggttatgag cccgacgagc taccaggctg
    19321 ctccaccccg cgcctgaaac gtggcaaatt ctactcgttt tgggcaaaat ttgcaaatac
    19381 tgctgggatt tggtaccgag gacgggacgt aaaatctgcg cacagtatag tgaccaggca
    19441 tgagttatgt caaccctatt cccaatatgc agatgaatga atatcactct tcgttatact
    19501 catcccacct ctcctgctta tacacgcatt tcacaacgtt atttcagtaa accttcacta
    19561 aatgcttcct gtctctgcta aaagatgatt aaatgaaaac tcatttattt tgcataaaaa
    19621 tgcactaaag cagaaaccga tctcattatc agtcaatcaa gcagggttct attctatgac
    19681 gacgattctt aagcatcttc cagcaggtca acgtattggt atcgcttttt ccggcggtct
    19741 ggacactagc gccgcgctgc tgtggatgcg acaaaaagga gctgtcccat atgcctatac
    19801 tgcgaatctg ggacaaccgg atgaggatga ctatgacgcc attcctcgtc gcgcaatgga
    19861 gtatggcgca gagaatgccc gcctgattga ttgccgcaag cagttggttg cagaagggat
    19921 cgcagcgatt cagtgcggcg ctttccataa tacgactggc ggactgacct atttcaatac
    19981 cacgccgctg ggccgtgccg tgaccggcac gatgctggtc gccgcaatga aagaagacgg
    20041 cgtgaatatc tggggcgacg gcagcaccta taaaggcaac gatattgaac gtttctatcg
    20101 ttacggcctg ctgaccaacg ccgagctgca gatttacaaa ccgtggctgg ataccgactt
    20161 tatcgatgag ctgggcggcc gtcatgagat gtctgaattt atgattgcct gcggtttcga
    20221 ctataagatg tcagtcgaaa aagcctactc caccgactcc aacatgctcg gcgcgacgca
    20281 cgaagcgaaa gatctggagt ttcttaactc cagcgtcaag atcgtcaacc cgattatggg
    20341 cgtgaagttc tgggacgaaa gcgtgaagat cccggcagaa gaggtgaccg tccgtttcga
    20401 acagggacat ccagtggcgc tgaacggtaa aaccttcagc gatgatgttg agatgatgct
    20461 ggaagcgaac cgcatcggcg gacgtcacgg cctgggcatg agcgaccaga tcgaaaaccg
    20521 tatcattgaa gcgaaaagcc gcggtattta tgaagccccc ggaatggcac tgctgcacat
    20581 cgcttacgag cgtctgttga ccggtattca caacgaagac accattgaac agtatcattc
    20641 tcatggtcgt cagttgggta aactgctgta tcagggtcgc tggttcgact ctcaggcgct
    20701 gatgctgcgt gacggcctgc aacgttgggt cgccagccag attaccggtg aagtgacgtt
    20761 ggagctgcgt cgcggcaacg actactccat cctgaacacc gtgtcagaca acctgaccta
    20821 taaggctgag cgtctgacca tggagaaagg cgagtccgtg ttctcgccag acgatcgtat
    20881 cggtcagttg accatgcgta atctggacat tactgatacc cgcgagaaac tgttcggcta
    20941 cgcgaaagcg ggtctgttaa ccgcctcttc cgcgaccggt ctgccgcagg ttgagaatct
    21001 ggaaaacaaa gcgaagtaaa catttatcat tctaaggccg cgaaagcggc cttttttatg
    21061 cgcggaatat aaggtgtcta taggcctgat aaacgtagcg tcatcaggcg ttgtaataat
    21121 gtcggatggc ggcgtaaacg ccttatccga cctacagaaa atcacaaata acagacgaaa
    21181 aaaaagacgc ttttcagcgt ctttctttcg gaatattggt accgaggacg ggacttgaac
    21241 ccgtaagccc tattaggcac taccacctca aggtagcgtg tctaccaatt ccaccacctc
    21301 ggcacggata ctgctattag cgcgggatat cgctggtcgg ctgggccggt gcagcaggtt
    21361 gagtctgctc ggttttcgcc ggcgcgctca gattttccca ctcgcttcct ttattggttt
    21421 tgttgctatt gatattaccc aacaccagac tgatgatgaa gaacagcgtc gccaataccg
    21481 ccgtcattcg agtcatgaag ttaccagaac cacttgaacc aaatagcgta gcggaagcgc
    21541 ctgctccgaa ggaggctccc atatcagcgc ctttaccttg ctgcagcatg atcagaccta
    21601 caaggccaat tgccacaata aggaaaacaa ctaaaagagc ttcgtacata atcaacctgt
    21661 tccttgcgga gttgccgcgt accaatgctt ctaccaataa agcgggattt ttactgtttc
    21721 ccactgaagc gggtgtgaat actaaccaaa gcgaatgacc ttcgcaaggg caatttaagc
    21781 gcattgtatc aactgcggaa aaaaacagca aaagcgttgt tttttgcggg cagtaaggcg
    21841 gcaaccgccg cctttttagt cacttaaacg cttaaacggc ttttaccgca tccgcgatac
    21901 gatgggcgaa agccgtaacc tgcgcttcat cctcgccttc aaccatcacg cgaatcagcg
    21961 gttcggtacc ggatttacgt agcagtaccc gcccacgatt gccgagcgtg gcttctacgt
    22021 ccgccgttac cgctttcacc gcttcatttt ccagcggatc gccgctacca gcggtgtaac
    22081 gcacgttaac cagaatctgc gggaacattt tcattccgct gcacagatcg tgcagactca
    22141 tatgattacg caccatcgcc gccagaactt gtagccccgc cacaataccg tcgccagtgg
    22201 tcgttttatc cagcagaata acgtgaccag agttttccgc gccgatgcgc cagccttttt
    22261 cctgcaattt ttccagcaca tagcggtcgc ccactttcgc ccgggcaaac ggaatgccaa
    22321 gctgcttgag cgccagctcc agccccatat tgctcatcag cgtccccacc gcgccgccgc
    22381 gcagttgccc ctggcgcagc ccttcgcgcg cgatgatata catgatctga tcgccatcga
    22441 ctttattgcc ttcatggtca accatgatga cccggtcgcc gtcgccgtca agcgcgatgc
    22501 cgaggtccgc cttctccgcc aacacgcgcg cctgcaacgc gcgcacgtcg gtcgcgccca
    22561 cttcttcatt aatgttgacg ccgtttggct cacagccgat ggcgatcacg gtcgcgccca
    22621 gctcgcgcag cacattcgga gcgatgtggt aggtagcgcc gttggcgcaa tccacaacca
    22681 ctttcaggcc gttgaggctc agttcgttcg ggaaggtgcc tttacagaac tcaatatagc
    22741 gtccggcggc gtcgacgatg cggctggctt tccccagctc ggcggagtct acgcaggtga
    22801 tctctttttc catttcggct tcgatggctt cttccacatc gtcaggcagt ttcgtaccgt
    22861 cgatagagaa gaatttaatg ccgttatcat agaacgggtt atgggaagcc gagataacga
    22921 tacccgcctc cgcgcggaaa gtccgcgtca gataggcgac ggctggcgtt ggcataggtc
    22981 cggtaaacga ggccgacagc cccgcagcgg caaggcctgc ctccagcgcg gattccagca
    23041 tatagccgga aatacgcgta tctttaccga taatgatttt acgcgaacca tgacgcgcca
    23101 gcacttttcc ggcagcccaa cccagtttaa gcacgaaatc aggtgtaatg ggggcattgc
    23161 ctacacgtcc gcgaatccca tcggtaccga aatatttacg attactcata gcgtttgttt
    23221 ccctttgcag acagagtggc ttccaccacc cgcatcgcct ctacggtttc tttgacgtca
    23281 tggacgcgaa tgatctgcgc gccctgcatc gcagcaatta ccgcgcacgc aaggctaccg
    23341 ttcagacggt ctgatggtcc cacgttaagt aactgaccaa ccatcgtttt acgtgacatg
    23401 cccaccagca gcggcaggtt aaaatgatga aactcaccca gtcgcgccag taaggtataa
    23461 ttgtgagaga gatttttacc gaaaccgaat cctgggtcga gcaacaattt ctcttttgcg
    23521 atgccggcct tctcacaacg tgctatttgc tcaataaagt agcgattcac ctcggcaaag
    23581 acatcgtcat atttcggcgc ctcctgcatg gttttggggt tgccctgcat gtgcataaga
    23641 ctgaccggca agccggtttc cgctgccgct tccaacgcgc cgggttcgga gagtgaacgg
    23701 acatcattga taatatgcgc gcccgccctt gccgcttcac ggatcacctc gggtttagag
    23761 gtatccacag aaatccacac ttcaaaacgt tgcgcgattg cttccagtac cggaataacg
    23821 cgatccagct cttcttccac gctcacttct gccgcgcctg gtcgcgttga ttcccccccc
    23881 acatcaataa ttgtcgcccc ggtattcacc attaaattcg catgtttcac cgcctcaatc
    23941 agcgtgttat gcgcgccgcc gtcggagaac gaatccggcg ttacgttcag gatccccata
    24001 acatgcggat gagtgagatc gagcgtggcg ccctgagcga agagtttcat ggtcaaaatc
    24061 cctgttttat ttatggtgag ttaaaaaaag aaaaaccccg gggcaagccc cagggtttcg
    24121 gtgagcgcta aacataatgt tgtaaaacaa atgcttattt gtcgcccagc tgctctgaca
    24181 tcgtgttgcc cgggttcggc gtgcgtggtt catcaaccgg acgcggcgcc tgaggcgtac
    24241 cattgctgtc agagttattg gtgccgtttg gatcttccca gcccgcaggc ggacgcactt
    24301 cacgacgcgc catcaggtca tcaatctgcg gcgcatcgat ggtttcatat ttcatcagcg
    24361 catctttcat cgcgtgcaga atatccatat tgtcagtcag gatctgacga gcgcgattgt
    24421 agttacgttc aatcagcgct ttcacttcct ggtcgatgat acgcgcagtt tcatcagaca
    24481 tatgtttcgc ttttgcgacg ctacggccga ggaacacttc gccctcttct tccgcgtaca
    24541 gcaacggacc gagtttctcc gagaagcccc actgggtgac catgttacgc gccaggttag
    24601 tcgcgacttt aatgtcgttc gacgcgccgg tagaaacatg ctcaacgccg tagataatct
    24661 cttccgccag acggccgccg tacagcgtgc tgatttggct ttccagcttc tgacggctgg
    24721 cgctgatcgc gtcgccttca ggcaagaaga aggtcacgcc cagcgcacga ccacgcggga
    24781 taatcgtcac tttgtgcacc ggatcgtgtt ccggcaccag gcgaccgata atcgcgtggc
    24841 ccgcttcgtg gtacgcggtc gactctttct gcgcttccgt catcaccatg gagcgacgtt
    24901 cggcgcccat catgattttg tctttcgctt tctcgaactc aaccatcgac actacgcgct
    24961 tgttgccgcg tgcggcaaac agcgccgctt cgttgaccag gttcgccagg tccgcaccgg
    25021 agaagcccgg cgtaccgcgc gcaatgatcg ccgcatcaat gtccgtcgct aacggtacgc
    25081 gacgcatatg caccttcaga atctgctcac gaccgcgaac atccggcagg cctaccacca
    25141 cctgacggtc aaaacggcca ggacgcagca gcgccgggtc aaggacgtcc ggacggttag
    25201 ttgcggcgat aacgatgata ccttcgttac cttcgaagcc gtccatctca accagcatct
    25261 ggttcaacgt ctgctcacgt tcatcgtgac caccgcccag accagcgcca cgctggcgac
    25321 ctacggcgtc gatttcatcg atgaagataa tgcacggtgc cgctttcttg gcttgttcga
    25381 acatgtcacg cacacgagat gcgccgacac ccacgaacat ttccacaaag tcagaaccgg
    25441 aaatcgtaaa gaatggcacc ttcgcttcac ccgcaatggc ttttgccagc agggttttac
    25501 cggtacccgg cgggccgacc atcaggacgc ctttcggaat tttaccgccc agcttctgga
    25561 aacggctcgg ttcacgcagg tattcaacca gttccgccac ttcttctttc gcttcgtcac
    25621 aacccgcaac gtcagcaaac gtggttttga tctgatcttc cgtcagcata cgcgccttgc
    25681 tcttaccgaa cgacatggcg cctttgccac cgccgccctg catctgacgc atgaagaaga
    25741 tccagacgcc gatcagcaac agcatcggga accaggagat gaagatagaa gccagcaggc
    25801 ttggctcttc aggtggttcg ccaacaacct tgacgttttt agtcagcagg ttatcaagca
    25861 gcttcggatc attaatcgga atgtaagtcg tgtaacggtt actatctttc ttggtaacgt
    25921 tgatctcacg tccgttgata cgcgcttcgc gaacctggtc ctgattgacc tcttgcagga
    25981 aggtagagta atccacctta cggccattag actcgctggg cccaaagctc tggaatactg
    26041 acatcagcac aacggcaatg accagccaga gtattaggtt tttcgccatg tcactcaagg
    26101 gattaacctc ttattacaac tgtgttaaaa acagcgtcag gatactctat atccagtttc
    26161 tttcaaacct tacgtctgaa atctgccggt tatcactttc gcccggtcgc tacaatgtac
    26221 acttcacgcg aacgcgcgcg cgaagagtcc ggcttacgaa ctttaacctt cgtaaacagg
    26281 gagcgaattt cccttagata ctcatcgaaa ccttcgccct ggaacacctt cactacaaaa
    26341 cttccgcctg gcgccagcac atcgcggcac atatctaacg ccagctccac cagatacatg
    26401 gcgcggggga tatccaccgc cggtgttccg ctcatgtttg gtgccatatc cgacatgaca
    26461 acttgtactt tactgtcacc cacgcgttcc agtaacgctt tcatgacaag ttcatcacga
    26521 aaatcgccct gaagaaagtc cacaccaacg ataggatcca taggtaaaag atcacaagcg
    26581 atgatgcggc ctttgccgcc aatctgcgtg accacatact gtgaccaccc tcctggcgca
    26641 gcgccgagat cgactaccgt cattcccggc ttaaaaagtt tgtcactttg ctgtatttca
    26701 tcaagtttaa accaggcacg ggagcgtagc ccctttttct gcgcctgttg aacatattta
    26761 tcgctaaagt gttcctgaag ccagcggctt gagctggcag aacgcttttt acctgtcatt
    26821 taactttccc gtcggggcag ttcatcgtag ccaatggcgt aaatttctac acgcctattt
    26881 ggcgatataa gggagatggc ggtagaatga cccgttttca atcccaacgt aagcaaaaat
    26941 atacgatgaa tctgagtact aaacaaaaac agcacctaaa aggtctggca catccgctca
    27001 agcctgttgt tatgcttggc aataatggtt tgaccgaagg ggtactggcc gagattgaac
    27061 aagcgttaga gcaccatgaa cttatcaagg tgaaaatcgc ctcggaagat cgcgaaacaa
    27121 aaaccttgat cgtggacgct atcgtgcgcg aaaccggcgc ctgtaacgta caggtcatcg
    27181 gtaaaacgct ggtgctgtat cgcccaacta aagagcgtaa aatctcgctg ccgcgttaag
    27241 gatatcctaa agtcgaacac aaaatctgtg taaaacgagg ggttttccac gagcaggaga
    27301 gcaaaatgcc acgctctctc cgttgataaa aggccgctat gcggcctttt tcctttcttt
    27361 acaatacacc aacaatttgc gtattgagta ctgcttaaag gtattccact ttaagcactt
    27421 cgtattccac atcgccgcca ggcgttttga tcaccacgac gtcatcctgc tctttgccaa
    27481 tcaggccgcg agcgattggc gagtttaccg aaatgagatt ttgcttaaaa tccgcctcat
    27541 catcgccaac aatacgatag gtctgctctt cgtcggtgtc caggttcagc accgtgacgg
    27601 tagcgccgaa aatcacgcga ccattgttcg gcattttggt gacgtcaatc acctgcgcat
    27661 tcgacagttt tgcttcgata tctttaatgc gcccttcgca gaaaccctgc tgttcgcgtg
    27721 cagcatgata ctccgcgttt tcttttaaat cgccatgttc gcgcgcttcg gcgatagcgg
    27781 cgatgatttc aggacggcgc acagatttca gaaaatccag ctcttcgcgc agtttttcgg
    27841 ctccgcgtaa ggtcatcgga atagcttgca tttgttatac ctcttgaaca ttcctgtagg
    27901 gggcaatgaa ctctaccccg gctgctaagc cagccccggc atatgccata ccagggtcag
    27961 aagcaaaaaa acaccaaccc gggcgcgcag tcccaggtca gctacaattt cctctttgat
    28021 aaccatttta ccctggagtt ccctatgggt catcgtttac tttttagggc gttgcgccgt
    28081 agtatgacgg cttgtttcca gggtgttagc gcgagattat gcgattttcc agatttatca
    28141 tcggattgac caccagtata gcgttcagcg ttcaggccgc gaatattgac gaatacatca
    28201 aacagcttcc ggccggcgcc aacctcgcgc tgatggtgca aaagattggc gcgcccgcgc
    28261 cggctattga ttatcatagt cagcagatgg cgcttcccgc cagtacccaa aaggtgatta
    28321 ccgcgctggc ggcgctgatt caactcggcc cggatttccg ttttacgacc acgctggaga
    28381 ctaaaggcaa cgtcgataac ggcatcctga aaggtgactt aattgcgcga ttcggtggcg
    28441 atccaacgct aagacgtcag gatattcgca atatggtcgc gacgctgaaa aagtcaggcg
    28501 tcacgcaaat cgacggcaat gtgcttatcg acacgtcgat tttcgccagc cacgataaag
    28561 cgccaggctg gccgtggaac gacctgacgc agtgtttcag cgcgcctccc gccgccgcca
    28621 ttgttgaccg caactgtttt tctgtgtcgc tttatagcgc gcaaaaacca aacgatttag
    28681 cttttattcg cgtggcctct tattatccgg taacgatgtt cagccaggta cggactctgc
    28741 cgcgcggttc ggcagacgcg cagtattgcg agctggatgt tgtgcctggc gatttgaacc
    28801 gttatacgct taccggctgt ttaccacagc gcgccgaccc gctgccgctg gcctttgcta
    28861 ttcaggacgg cgccagctac gcgggcgcga tcctcaagca ggaactgaaa gaggccggga
    28921 taacttaccg cggcacgctg ctgcgccaga cgcaggttaa cgagcccgga acgatcgtcg
    28981 ccagtaaaca gtcggcgcca ctgcacgatc tgcttaagat tatgctgaaa aagtcagaca
    29041 acatgatcgc cgatactgtt tttcggatga ttggtcatgt caggtttaac gtgcctggca
    29101 cctggcgggc gggatcggat gctgttcgcc agatcctgcg ccaacaggcg ggaattgata
    29161 tcggcaatac cattattgcc gacggttccg gtctttctcg ccataacctg atcgctcccg
    29221 ccacgatgat gcaggtgctg caatatatcg cccaacacga taacgagctg aactttatct
    29281 ctatgctgcc gctggcgggc tatgacggtt cattgcaata ccgcgccggc ctacatcagg
    29341 cgggcgtaga cggtaaggtt tcggcgaaaa ccgggtcact gcagggcgtg tacaacctgg
    29401 cgggctttat taccaccgca agcgggcagc ggatggcatt tgtacagtat ttgtccggct
    29461 acgcggttcc acctgccgat cagcgtaatc gacgtattcc gctggtacgc ttcgagagtc
    29521 gattgtacaa ggatatttat cagaataact gagtgcatta ttgccggatg gcggcgctaa
    29581 cgcgtcttat ccggcctaca aagaacataa taaaacgggc cgcaaatgcg gcccgttggc
    29641 ttttgtaggc cggataagcg taagcgccat ccggctacga gattaacgtt tgtagatgaa
    29701 ctcgacgcct tcttcgtcgt cttcatccca gtcgtcatcc cagtcatcgt ctgcgtcttc
    29761 ttccacttca gccaactgct ggcgatgata atcgtcccac atgaactcga ctttttccgg
    29821 ctgttttgct tcttcagcct gcgcgatcgg attctcgatg ataaaggtca tcacatccca
    29881 gcagagatct ttcaccccta gctgactggc agcggaaatc agatagtatt tcccttccca
    29941 gcccaacgct tcggcgatcg ctttcgcttt ctcttccgct tcggatttat ccatcagatc
    30001 gatcttgttg aacactaacc agcgcggttt agccgccaga tcctggctgt atttttccag
    30061 ttcgccaata atgatacggg cgttttccac cggatcggaa ccatcgatcg gatcgatatc
    30121 aatgaggtgc agcagtacgc ggcaacgttc gaggtgcttc aagaagcgaa tccccaggcc
    30181 cgcgccttcc gccgcgcctt cgatcaaccc cggaatgtcg gccaccacaa aactcttttc
    30241 gctgtccata cgtaccacgc ccaggctcgg caccagcgtg gtaaacggat agtccgcgac
    30301 tttcggtttt gctgccgata ccgcgcgaat gaacgttgat ttaccggcat ttggcatccc
    30361 cagcatcccg acatccgcca gcagcatcag ttccagcagc aggtcgcgct tatcgcccgg
    30421 cgtaccattg gttttctggc gcggcgtacg gttaaccgag gatttaaaac gggtattgcc
    30481 taacccatgc cagccgccct tcgcgaccaa cagacgctga ccgtgtttgg tcatgtcgcc
    30541 catcgtttca ccggttcctt ggtcgataac gcgcgtaccg accggcactt tgatggtcac
    30601 gtctttaccg cgtttaccgg tacagtcgcg gctcgcgcca ttctgaccac gttcagcgcg
    30661 gaacgatttt tcaaagcggt aatcgatcag cgtattcagg ttttcatcgg cttccatcca
    30721 gacgtcgccg ccgtcgccgc catcaccgcc gtccgggccg cctttcggga tatatttttc
    30781 gcggcggaag ctcacacagc cattaccgcc atcgcctgca acgaccagaa tcgatgcttc
    30841 atcaacaaac ttcattttat tctccgtaaa tcattcgcct gagcggggtt gcgaaaccac
    30901 cgtttcatgc ttgcgtaaac cgccccaaat acgatgacca atggcggaat acatcgcgcc
    30961 cgcaaccacg acaaacgcac cgagataacc taaaaggttt aacatcggtc tggcgaagaa
    31021 atcgggccag gccatagata aaagatctga aaacagcagg gtaaatagcg gtgtaagcgt
    31081 gattatcgcg ctcacctgcg ccgcctgcca acgcgccatc gcttccgcca gggcgccata
    31141 tcctaccagc gtatttagcc cgcagaaaat caaacaggcg agctgccagt cgctcagttg
    31201 cgctatcacc atcggttttg ccaacggcaa aagcgctatc gtacataaag tgtacagtaa
    31261 aaacaggatc tgctgcgagg ccagacgtcg caataatact ttttgcgcca cgccatagct
    31321 cacccacacc atcgccgcgc ctacgccaaa aataacgccc caggtgtagt cggtcagtcg
    31381 ggtaaaaatc tcgatcagac tggtgttaaa aaacattacc agcccgctca ataacatcag
    31441 cgcgccaatc acctgcgtac cgcgcatctt ttctttcaga ataaagacgc tggcgaccat
    31501 catgccaacc ggcgagagct ggccgataac ctgcgacgcg gttgggctta aatattgcag
    31561 ggaagaactg aacaaaatga aattaccgaa cagtccgcag gtcgctatcg ccaataacac
    31621 caaccagcgc ggcttacgaa aaatacgcag cggcggcagc tttcttttta ctgccagtat
    31681 cgccccgagg ccaatactgg ccattaagaa gcggtagaag acaatggttg aaggctccat
    31741 cacctccagc acttgcttca ttgctattgg caacgctccc cagcacatcg cggtagtgag
    31801 cgctaaaaga atgccaatgc ctgcctgctg cttcatgccg tgttccctgc aaagacccgt
    31861 taacggcatt cacacagcca cacgggtata ttttagtcgg ccatcgaatg taaaaagccc
    31921 cgcaacaggt gcggggcttt catccgttac cggaccacaa aaaacttact cagcaacgat
    31981 gctgatgtat ttacggtttt tcgggccttt aacttcgaat ttcactttac cgtctgcttt
    32041 agcaaacaga gtgtggtcac gaccgcaacc aacgttggtg ccagcgtgga atttagtacc
    32101 acgttgacga acgatgatgc tgcctgccag aactgcttca ccgccaaagc gttttacgcc
    32161 cagacgttta gcttcagaat cgcgaccgtt acgagtcgag ccgccagcct ttttatgtgc
    32221 catttaatct gctcccctaa tcttaagcgc tgatgccggt aattttcaca tcagtgaacc
    32281 actgacgatg gccctgctgc ttacggtagt gtttacggcg acgaaactta acgattttaa
    32341 ctttctcgcc acgaccgtgg gcaacaactt cagctttgat tacgccgcca tcaacgaaag
    32401 gaacgccgat tttgacttct tcaccgtttg cgatcatcag aacttcagcg aactcgatag
    32461 tttcgccagt tgcgatgtcc agcttttcca ggcgaacggt ctgaccttcg cttactcggt
    32521 gttgtttacc accactttgg aaaaccgcgt acataaaaaa ctccgcttcc gcgcacacct
    32581 ttcaatgatt cagagcgcgc tataaatatt cacaataggg cgcgaatatt acgcaaattg
    32641 cacggctttg acaagtgcta ccatcaatac atgaagaaaa aaaaacacaa cgcatacggt
    32701 aacgtttatc tgcggcgttt tttcagtaca atcagggtat atttctaacc ataaacccta
    32761 cgttacctca ttcagacatg ggataatcgg agcgataagc ccggcttttg cgatgaattt
    32821 agaaaaaatc aacgagttaa ccgcgcaaga tatggcgggt gtcaatgcga caatccttga
    32881 acagcttaat tccgacgttc aactgattaa tcagctagga tattacatta ttagcggcgg
    32941 cggaaaacgc attcgtccga tgattgccgt tcttgccgcg cgtgcggtgg gttatcaggg
    33001 taacgcgcac gtgactatcg ccgctctgat cgagtttatc cacacggcga cgctgctaca
    33061 tgatgatgtg gtggatgaat ctgatatgcg tcgcggcaaa gcgacggcaa atgccgcttt
    33121 cggtaatgcc gccagcgtgt tggtcggcga ctttatctat acccgcgcct tccagatgat
    33181 gaccagcctc ggctcgttaa aagtgctgga agtgatgtcg gaagcggtca atgtgattgc
    33241 agaaggcgaa gtgctgcaat tgatgaacgt gaatgacccg gacattaccg aagaaaatta
    33301 catgcgggtg atttacagta aaacggcccg tctgttcgaa gccgccgccc agtgctccgg
    33361 tattcttgcc ggttgtacgc ctgagcaaga gaaagggttg caggactatg gccgctacct
    33421 tggtacggct ttccagctca ttgacgatct gctggattac agtgccgacg gcgagcatct
    33481 cggtaaaaat gtgggtgatg acctcaatga gggcaaacct accttaccgt tgcttcacgc
    33541 catgcgccac ggtacgccag aacagtcagc gatgatccgt accgctattg aacaaggtaa
    33601 tggccgtcat cttctggaac cggttctgga agcgatgacc acctgcggct cgctggaatg
    33661 gacgcgtcag cgagcggaag aagaagccga caaagcgata tccgcgttgc agatattgcc
    33721 ggatacccca tggcgtgagg cgctaatcgg tctcgcacac atcgcggtgc agcgcgatcg
    33781 ttgatgccat tctcttatcc cgcgcactgc gcgggatatc ccattaagtt ctaataaact
    33841 ccagataccc tattgcctgt cttttcgtat attcatatac ggcttcccct ggcatattct
    33901 gaatattgcc gccacttaca tgaacttttt agaacattcc ttcacgaagc gttatagtat
    33961 cgaacgtcgt cgggttgtta aaaccgtaag tgattaatct aaggagtgat ggatgtatgg
    34021 aaagcaagct tattgactgg catccggccg atatcattgc cggactacgt aaaaaaggga
    34081 cttcaatggc cgctgagtca cgccggaatg gattgagttc atccacgctg gccaatgcat
    34141 taacgcgccc gtggccgaaa ggagagttga ttatcgcgaa agcattggga acggaaccct
    34201 gggttatttg gccatcgcgt tatcacgatc cgcgcacgca tgagtttatc gacagaacgc
    34261 ggcttatgag agcgcgtaat aaagacaaac agaatgtaga gtaagtgcct gtaaaacaac
    34321 ccccgcaatc gcgttcgcgg gggttattca gcgtacagaa ggttattcgc ctttcacgcg
    34381 ttcaatattc gcgcctagcg cgcgcagttt gtcttcgatg cgctcataac cgcgatcgat
    34441 gtgataaatg cgatccacaa tcgtcgtgcc ttccgcaata cagcccgcca gcaccaggct
    34501 cgcagatgcc cgcagatctg tcgccatgac ctgggcgcca gagagcgttt ctacgccatg
    34561 gcatatgacg gtattgcttt caatttccgc acgcgcgccc atgcggctga gttcaggcac
    34621 gtgcataaaa cggttttcaa agacggtttc agtgataaag cccgtccctt ccgccaccag
    34681 gttcagcaac gtgaactgcg cctgcatatc ggtcgggaat gccgggtgcg gcgctgtacg
    34741 gacattgacc gctttcggtc gtttgccgtg catgtccaga ctaatccagt cctcgcccac
    34801 ttcgatatcc gcgccagcat cgcgcagttt cgccagtacc gcgtccagag tgtccggttg
    34861 cgcgttacgg cagaggattt tgccgcgaga gatcgctgcc gccaccagga aagtccccgt
    34921 ttcgatacga tccggcagca cacgataaac gccgccgccc agacgctcta cgccctcgat
    34981 cgtaatacga tcggtgccct gcccggcgat cttcgccccc agcgtaacta ggaagttagc
    35041 ggtgtcgaca atttccggct cgcgcgcggc gttttcaatg atggtcgtcc cttccgccag
    35101 cgtagcggcg cacataatgg tgacggtcgc gccgacgctg accttatcca tcacgatatg
    35161 cgccccttta agacgtcctt cgacggaggc ctttacgtag ccctcttcta gcttgatggt
    35221 cgcacccagt tgttccagac cggtaatatg tagatcaacc ggacgcgcgc cgatagtaca
    35281 gccccccggc agagagactt gtccctgacc aaaacgggca accagcggcc ccagcgccca
    35341 tatcgaggcg cgcatggtct taaccagatc ataaggcgcg cagaacacgt tcacctggct
    35401 ggcgtcaatg tgtaccgatc cattgcgttc cactttcgcg cctaattggc tcaggagctt
    35461 catcgacgta tccacgtctt tcagttttgg aacgttttgg atctctaccg gttcttctgc
    35521 cagcagagcg gcgaacagga tcggcagcgc ggcgtttttg gcgccggaaa ttgtgacttc
    35581 gccctggagc gtcgttggcc cctgtacacg aaatttatcc attattgtat tctcagttaa
    35641 gcattcatct ccgctaccgg caggttaccc gtagcttaaa atccgttaag tttacgatcg
    35701 cgcgcccatt ccgccggggt atatgctttg atcgatacgg catggatacg gttgtccgca
    35761 atgtactcca ttagcggccc atagaccgtt tgctgtttct tgacccggct catgccgtca
    35821 aacatctcgc ccacggcaat aacctgaaag tgactgccat cgccggagac gtggacttcc
    35881 tggagggaga gggcattcat cagcacactc tgaatttcat gattttccat gggttcttta
    35941 ttcgtcaaat agtgaaaaca gcccaacatc ttagagcaaa gtcgcgccgt cttaaataag
    36001 caaaagatta cgctgataaa tcagcgcggt aaaagtgccg gatggtgctg ctaacgcaat
    36061 ttatccggcc tacggggatc atgcgaagtg taggccggat aaaccatccg gcattcatta
    36121 catacgggga agtacgtctt caggcaagtt atataattgc gccagcgcgt aaaccttgtc
    36181 gttaacgcca gacagcgaca cggcattgcc ctgctttttt gcctggttca caaggtgcgc
    36241 cagcagcgcc agtccccccg tatctaccct ggagatctgg ctcaggtcga tacgggtaac
    36301 gccattcatc gcttctacgc gcgcgtccca tagcggcgcc aacacgtcct gatccagctc
    36361 tcccgccagc accagagtgt ccgcctcacg cgtccaggtg agttgcggcg tcattactgt
    36421 ttctcgtcca aagtaatttt ctgttgagag atagatttca gttgtgcggt caggccgtcg
    36481 atgcctttag tacgcagcag atcgctccac tcattttgct tggtggtgat catgctgacg
    36541 ccttccgcaa tcatgtcata cgcctgccag ttgccggtct gagtgttttt gcgccactgg
    36601 aaatccaggc gtaccggcgg acgaccgttg ggatcgataa tcgttacacg gataggcaca
    36661 atggtcgcat cgcccagcgg ttgctcaggc gctatctggt aagtctggcc gtggtacatc
    36721 gccagcgcct gaccgtatgc ctgtttcagg tattcgcgaa acgctgcaaa ataggcttca
    36781 cgctgcgccg gggtcgcctc tttgtagtag cggcccaaca ccagcgcgcc ggcatatttt
    36841 acctgcacgt acggcagaag ttcctgatca acaacgtctc gcaggtaatc cggattggca
    36901 cgaattttcg gctgttcgtt tttcaggcga tcaaaagttt tctgcgccgc ctcgttcatc
    36961 agtttataag gattgctctg atccgctgcc gttgctgcgc ttaatggcgc aatgaccagc
    37021 agggccacca tcatcagtcg tttaaacatg cctcaattct cctgagatta tttcgtttcg
    37081 cccgcgggcg ttgtggcttc agtatggcct tccgttgcgg ctggcgcatc gccagaattc
    37141 ttattgtcgt cgcctttgct gttataaagg aactggccaa tcatatcttc cagcaccatt
    37201 gcagacttgg tgtcctgaat cgtactccca tctttgagga tagacgttcc cagctcagga
    37261 tcttcaaaac cgacgtttaa tgccagatat tgctccccca gcagcccgga agtacgaata
    37321 ctcaacgagc tggtatcggg aatatggtta taacgctctt cgatgtcgag cgttacgcgc
    37381 ggcaggtatg ttttcggatc aagcgagata tcttcaaccc gcccgacaac caccccgccg
    37441 atgcgtaccg gggaacgcac tttcagaccg ccgatgttat cgaaggtcgc ataaacctta
    37501 taggtcggct ccgtgcgcat agaggtcaca tttgccgcct tcaggcaaac aaacagcgcc
    37561 gccagcaacg ctaccagcaa aaaaacgcct acccaaattt catttttttt cgtttgcatg
    37621 aactcaattc ccaaacatca gtgcggtcag cacaaaatcc agccccagaa cggccaacga
    37681 tgcgtgaacc acggtacgcg tcgttgcccg gctaatcccg gcagaagtcg gtattgcgtc
    37741 ataaccgttg aataacgcaa tccatgttac cgtaatggcg aacaccacgc tctttatcag
    37801 acagttcacc aggtccatac gccagtcgac ggcattctgc atcgcggacc agaagaaccc
    37861 ggcgtcgatt cccttccagc ttacgccgac cagcgagccg ccccagatac cgaccgccac
    37921 aaagataatg gtcagtagcg gcaatgaaat cacgcccgcc caaaagcgcg gcgaaatcac
    37981 ccggcgcaat ggatcgaccg ccatcatctc catactggag agctgctccg tcgcccgcat
    38041 caggccgatt tccgccgtca acgccgaccc ggcccgcccg gcaaacagca acgccgcgac
    38101 caccggcccc agctcgcgca gcagcgaaag cgccactaac atgccaagac tggtctccgc
    38161 gctgtaagtg gtcagaacca gatagccttg cagccccagc accataccga tgaatacgcc
    38221 ggagacaata atgataagca tcgacaagac gcccacatta taaagctggc gcaccagcag
    38281 cggcgcatgt ttgcgaaact ccggcttacc gataatcgca ttgaataaca ttaacccggc
    38341 gcgcccgaac gtcctgacgg ttttgatccc gctgtgtccg agtgctgcca gcgcatttaa
    38401 cagcatgagt ggcttaactc cctgtttcga gtaaatcaag gtgatagtcg cccgccggat
    38461 agcggaacgg aaccggcccg tcggcaatac cgtcaaggaa ctgacgcacg cgcgggtccg
    38521 tattctcctg caacgcctga gcgctaccgt gagcgacgat ttttttgtcc gccatgatcc
    38581 aggcgtgatc cgcaatactg agcacctctg gcacatcatg cgagaccacc acgcaggtca
    38641 cgcccagcgc gctgttcaat tctgaaatca gcttcaccag aacgcccatg gtaatcgggt
    38701 cctggccaac aaacggctca tcgaacatga tgagatccgg ttccagagcg atggcgcgcg
    38761 ccaacgcggc gcggcgcgcc atcccaccgg agagctcgga aggcatcagt tttgccgcgc
    38821 cgcgcagccc gacagcttcc agtttcatca tcacgacgct ttttagcagc ggcgcgggta
    38881 aattggtgtg ctcccgtagc ggataggcca cattgtcaaa cacgttcatg tcggtaaaca
    38941 gcgctcccga ctgaaacagc atactcatac gtttacggac ggtgtagagc cgcgaacggg
    39001 acatggccgg cacattctcg ccatcaaata agatctcgcc cttatccggc gggatctgtc
    39061 cgccaatcag gcgcaacagc gtggttttac cgatgcccga cggccccatg atcgccgtga
    39121 tcttcccgcg cggcaccgtc agggaaatat tatcgaaaat gcagcgttcg ccacggcaaa
    39181 agctgacgtc gcgcatatcg actaaattgg ccgcagactg acccattgat tcatccttcg
    39241 tattgccttg ttgaggtaac catggcgctg aatttaacca tgggttcgac ataattacag
    39301 aatattaact gacagggtta gcgaaagctg gcattcgttt tactttttag ccgcataaag
    39361 tcaaaattag gacttcgtta cggcttccag atatcccttc caggggaccg gcgagtatac
    39421 ctgaagaaag gactttagat gcttttagcg atggcgctac tcataattgg tttgcttctg
    39481 gtggcctacg gcgccgatcg tctggtgttt gcggcctcta ttttatgccg tacattcggt
    39541 attcccccgc tgatcatcgg gatgacggtc gtgagtatcg gcacctcgct gccggaaatt
    39601 attgtgtcgg tcgccgcatc gctacacggt cagctcgatt tggccgtcgg cgcggcgctc
    39661 ggttctaaca tcaccaatat tttgctgatc ttagggctgg cggcgctggt tcgtccattt
    39721 accgtgcatt ccgatgttct acgtcgcgaa ttgccattaa tgttatttgt tagcgtggta
    39781 gccggttccg tactgcatga cggacagtta agtcgcagtg atggtatctt tctcctgctt
    39841 ctggctgtgc tatggctgtt attcattgtt aaaatcgcgc gtctggccga acgccagggg
    39901 aatgacagcc tcacccgcga acaactggcg gagctgccgc gcgaagacgg gctccccgtc
    39961 gcgttcttat ggctgggcat tgcgctggtc atcatgccga tggcgacgcg catggtaatc
    40021 gataacgcta cggtgctggc gaactatttc gccatgagtg aattaacgct cggtctgaca
    40081 gtcatcgccg tcggcaccag tctgccagaa ctggcgacgg cgattgccgg cgtgcgaaaa
    40141 ggcgaaaatg atattgccgt tggtaatctc attggcgcca atatttttaa tctcgccatc
    40201 gtgctgggac tgcctgcgct gatcgcgccg ggggagatca acccgctggc gtttgggcgt
    40261 gattatagcg tgatgttgct ggttagcgtg gttttcgctt tactttgctg gcggcatccg
    40321 cgccagattg gccggggcgc aggtatactg ctgaccggcg ggtttatcgt atggctggcg
    40381 atgctctatt ggctatcgcc acttcttgtt ggataactgg aaacggatta tgtcgcattt
    40441 agcgttgcaa ccggggtttg actttcagca ggcaggcaaa gaggtcctgg aaattgaacg
    40501 tgaaggcctg gcggagcttg atcaatatat caaccagcat ttcacgctgg cctgtgaaaa
    40561 aatgttcaac tgcaccggaa aagtggtggt catggggatg gggaaatccg gccatatcgg
    40621 acggaaaatg gccgccacgt tcgccagtac cggcacctct tccttttttg tacatccagg
    40681 cgaagccgcg cacggcgatt tggggatggt tacgccgcag gatgtggtta tcgctatctc
    40741 caactccggc gaatccagcg agatcgcggc gctaataccg gtgcttaaac ggctgcacgt
    40801 accgttaatt tgcattaccg ggcgaccgga aagcagcatg gcgcgtgcgg cagatgtgca
    40861 tctatgtgtt aaagtgccca aagaagcgtg tccgttaggc ctggcgccta ccagtagtac
    40921 caccgcaacg ctggtgatgg gcgacgcgct cgccgtggcg ttgttaaaag cgcgcggctt
    40981 taccgccgag gatttcgctc tgtcgcatcc tggcggcgcg ctgggacgta agctactgct
    41041 gcgcgtaagc gatattatgc atactggcga tgagatcccg catgttaata aacatgccac
    41101 cctgcgtgat gcgctgttag aaattacgcg taaaaatctc ggtatgaccg tcatttgcga
    41161 tgaatccatg aagatcgacg gtatcttcac cgacggcgat ttacgtcgca tgttcgatat
    41221 gggcggcgat atgcgccagt tggggatcgc cgaggtgatg acgccagggg gcattcgcgt
    41281 gcgtcccggt attctcgctg tcgatgcgct gaatttaatg cagtcccgcc atatcacctc
    41341 cgtactggtt gctgatggcg accagttact cggtgtgtta catatgcatg atctcctgcg
    41401 tgcaggcgtc gtgtagaaac tcaaggataa ttaacgatga gtaaagcagg tgcgtcgctt
    41461 gcgacctgtt atggccccgt cagcacccat gtcatgacca aagcggagaa tatccgcctg
    41521 ctcatcctgg acgtggatgg cgtattgtct gacggcctga tttatatggg caataacggc
    41581 gaagagctga aggctttcaa cgttcgtgac ggctatggta ttcgctgtgc tttgacctcc
    41641 aatatcgagg ttgccattat taccggacga aaggctaaac ttgtagaaga tcgctgcgcc
    41701 acgctgggga ttgtccatct ttatcaggga cagtcgaata agctgatcgc ctttagcgat
    41761 ctgctggaaa aactggccat tgcgccggaa aatgttgcct atgtcggcga tgatctgatt
    41821 gactggccag tgatggaaaa agtggggtta agcgttgccg ttgcggatgc gcatccgctg
    41881 ctgatccccc gcgctgacta tgtgacgcac attgccggcg ggcgcggcgc ggtacgtgag
    41941 gtgtgcgatt tgctgctgct ggcgcagggc aagctggatg aggccaaagg gcaatcgata
    42001 tgagtaaaac cagacgttgg gttatcattc tactgtcgct ggctattctg gtactgattg
    42061 gtatcaatct ggcggataaa gacgatcctg ctgccgtgat ggtcaacagc aacgatccca
    42121 cgtataaaag cgagcacacg gataccgtcg tgtacagtcc ggaaggcgcg ttgagctatc
    42181 gtctgatcgc gcagcacgtt gaatattttt ccgatcaggc ggtctcatgg tttacgcaac
    42241 cggtattaac cacctttgat aaggataaag tgccgacatg gtcgatcaag gccgataaag
    42301 ccaaattgac taacgatcgg atgctctatc tgtatggcca tgttgaagtc aacgccctgg
    42361 tgcctgacgc tcaattacgc agaattacca ccgataacgc gcagattaat ctggtgacgc
    42421 aggatgttac ctcgaacgat ctggtgacgt tatacggcac aacatttaac tccagcggac
    42481 tgaaaatgcg cggtaactta cgcagcaaga acgccgagct gattgaaaag gttagaacct
    42541 cttatgaaat tcaaaacaaa caaactcagc cttaatctta tgcttgccgg ctcgctgctg
    42601 gccgccagca ttccggcctt cgccgtcacg ggcgataccg aacagcctat tcatattgac
    42661 tcggatcaac agtcactgga tatgcaaggc aacgtcgtga cctttacggg caacgtggta
    42721 atgacccagg gcacgattaa gatcaacgcc gataaagtcg tggttacccg ccctggcggc
    42781 gaacagggga aagaggtgat cgacggttac ggcaatccgg ccaccttcta ccagatgcag
    42841 gacaacggta agccggtgaa aggccacgct tcccatatgc attacgagct ggcgaaagat
    42901 tttgtggtgc tgaccggcaa cgcttatctg gagcagcttg acagcaacat taccggcgac
    42961 aaaatcacct acctggtgaa agagcagaaa atgcaggcct tcagcgagaa aggcaaacgc
    43021 gtcaccaccg ttctggtgcc gtcgcagttg caagacaaaa acaaaggcca gactccggcg
    43081 caaaagaaga gtaactaatt cgttatggca acattaactg caaagaatct ggcgaaggcc
    43141 tataaaggcc gtcgcgtagt ggaagatgtc agtctgaccg ttaactccgg ggagattgtc
    43201 gggctgctcg gtccaaacgg cgcgggtaaa accaccacct tttatatggt cgtcggtatc
    43261 gtgccgcgtg acgcgggcaa tatcatcatc gatgatgaag atatcagtct gctgccgctg
    43321 cacgcgcgcg cgcgccgcgg tatcggctat ttgccgcagg aagcctctat tttccgccgt
    43381 ctcagcgtat ttgataacct gatggcggta ctgcaaattc gtgacgattt gaccgcagaa
    43441 cagcgagaag accgcgccaa cgagctgatg gaagagtttc atatcgagca tctgcgcgac
    43501 agcatgggac aggcgctgtc cggtggtgaa cgccgtcgtg tagaaatagc ccgcgcgttg
    43561 gccgctaatc ccaaatttat cctgctggat gaaccctttg ccggcgtcga cccgatttcc
    43621 gttatcgaca taaaacgcat tatcgagcat ctgcgcgata gtgggctcgg cgtgctgatc
    43681 accgaccata acgtccgtga gacgctggca gtctgtgaac gtgcctatat cgtgagccag
    43741 ggccacctta ttgcccacgg tacgccgaca gaaatcctgc aagacgaaca cgttaagcgt
    43801 gtatatcttg gggaagactt cagactctga tagggtagag ggctatgctg ctctagcggg
    43861 agaaaacgac tctgaatatg aagcaaggtt tgcaactcag gcttagccaa caactggcga
    43921 tgacgcctca gctacaacag gccatccgtc tgttgcagtt gtctacgctg gaacttcagc
    43981 aggaactcca gcaagcgctg gaaaataacc cgctgcttga gcaaaccgat cttcatgacg
    44041 aaatcgacac tcagcaacct caggatgacg atcctctcga taccgccgac gcgctcgaac
    44101 aaaaagagat gccggaagag ctgccgcttg acgccagttg ggatgaaatt tacaccgccg
    44161 ggacgccgtc cggccccagc ggcgattata tcgacgatga gctgcccgtc tatcagggcg
    44221 aaacgacgca gtcgttgcag gattatctga tgtggcaggt tgagctaacg cccttctcgg
    44281 acaccgatcg cgctattgcg acatccattg tcgacgcggt agatgatacc ggctatctca
    44341 ccgtatccct ggacgaaatt cgcgaaagca tgggcgatgt agaggtggat ctcgatgagg
    44401 tcgaagccgt cctgaagcgt attcagcgtt ttgatccggt aggcgtcgcg gcaaaagatc
    44461 ttcgcgactg tctgctgatc cagctttcac aattcgacaa atccacgccg tggctggaag
    44521 aggcgcggct tattatctgc gatcaccttg atctgctggc caaccacgat ttccgcacgt
    44581 tgatgcgcgt tacccgacta aaagaagagg tgctgaaaga ggcggtaaac ctgattcagt
    44641 cgctcgatcc cagacccggt caatcgatcc agaccggcga gccggagtac gttatcccgg
    44701 atgtgctggt acgcaagcat aacggtcgct ggacggtgga gcttaatagc gacagtattc
    44761 cccgtttaca gattaaccag cactatgccg ccatgtgcaa tagcgcgcgc aacgatgccg
    44821 acagccagtt catccgcagt aatttacagg atgcgaaatg gctgataaaa agccttgaaa
    44881 gccgtaacga cacgctgctg cgcgtcagtc gctgcatcgt cgagcaacag caagcctttt
    44941 ttgaacaggg cgaagaatat atgaaaccga tggtactggc ggatatcgcc caggccgtcg
    45001 agatgcacga atccactata tcccgcgtga ccacgcagaa gtatttgcac agcccgcgcg
    45061 gtatttttga actcaaatat ttcttttcca gccacgtcaa taccgaaggc ggaggcgaag
    45121 cctcttccac cgcgattcgc gcgctggtga agaagttaat tgcggcggaa aaccccgcga
    45181 aaccactgag cgacagcaag ttaacctctc tgctgtcaga acaaggtatc atggtggcac
    45241 gccgcactgt tgcgaagtac cgagagtctt tatccattcc gccgtcaaac caacgcaaac
    45301 agctggtttg acccaaccga taaggaagac actatgcagc tcaatatcac cggacataac
    45361 gtcgaaatta ctgaagccct gcgtgaattt gtgacgacga aattcgccaa acttgaacag
    45421 tattttgagc ggattaatca ggtatacgtg gtgttgaaag tggagaaggt cacgcacatc
    45481 tcggatgcga cgctacacgt taacggcggc gaaattcacg ccagcgcgga aggccaggat
    45541 atgtatgccg ccattgacgg cttgattgat aaactggcaa ggcagttaac caagcataaa
    45601 gataaactga aacaatacta attgtccggg cagttagcca gtgcaggacg gcctgttgtg
    45661 tgacacaacg ggccatttgt acagttagcg ctccgaacct ggccatcaac ctgacaggac
    45721 aggttcttag gtgaaattat gataaataac gatacgactc tacaactgag cagtgtactt
    45781 aaccaggagt gtacgcgtag cggcgttcat tgtcagagta agaaacgcgc gctggaaatc
    45841 atcagcgaac tggcggcaaa acagctcagt ttacctcctc aggtcgtgtt tgaagccatt
    45901 ctgacacgcg aaaaaatggg cagtaccggt attggtaatg gtatcgccat cccgcacggg
    45961 aaactggaag aagatacctt acgcgccgtc ggcgtgttcg ttcagctcga aacgccgatc
    46021 gcgttcgacg ccatcgataa ccagccggtc gatctcctct tcgctctgct ggtgcccgcc
    46081 gatcaaacta aaacgcatct gcacacgctg tcgctggtgg cgaaacgtct ggcggataaa
    46141 acgatctgcc gccgcctgcg cgcggcgctg aatgatgaag agctgtatca aatcattact
    46201 gacaccgaag gtgagcagaa tgaggcataa caactcaatg gcatttattt ctgtcgttgt
    46261 gaggagaaac ggtacatggt actgatgatc gtcagcgggc gttccggatc aggtaaatct
    46321 gtcgctctgc gcgcgctgga agatatggga ttttactgcg tggataacct ccccgtcgtg
    46381 ctgttgcccg atctggcgcg aacgctggcc gatcgccaga tttccgccgc cgtcagcatt
    46441 gatgtgcgca atatacctga atcacctgag atttttgaac aggcgatgaa taatctgcct
    46501 ggcgctttct cgccgcaatt gctgtttctt gatgccgacc gcaatacctt gattcgccgc
    46561 tacagcgaca cgcgccgttt gcatccgctt tccagcaaaa atctttcttt ggagagtgcg
    46621 atcgataaag agagtgactt gctggagccg ttacgctcac gtgcggatct gatcgtcgac
    46681 acttcagaaa tgtccgtcca tgagctggcg gagatgctgc gtacccggct attgggcaaa
    46741 cgcgagcgcg aactgacgat ggtatttgag tccttcggct ttaaacatgg tatcccgatt
    46801 gatgcggact atgtgtttga tgtccgcttt ctgcccaacc cacactggga cccaaaactg
    46861 cgccccatga ccgggcttga taagccggta gccgcgtttc ttgaccgaca cacagaagtt
    46921 cacaatttta tctatcagac tcgcagctat cttgagctat ggttaccgat gctggagacc
    46981 aacaaccgca gctaccttac cgtcgctatc ggttgtaccg gcgggaaaca ccgttcggtg
    47041 tatattgcag aacagctggc agactacttc cgctcgcgcg gtaaaaatgt ccagtctcgc
    47101 catcgcacgc tggaaaaacg caaaacatga ccgtaaagca aactgttgaa gtcaccaata
    47161 agctgggcat gcatgcccgg cctgccatga agcttttcga actgatgcag ggttttgacg
    47221 ccgaggtgct attacgcaat gacgaaggca ccgaagcgga agcaaacagc gtcatcgctc
    47281 tgttaatgct cgactccgcc aaagggcgtc agatcgaaat tgaagccacc ggcccgcaag
    47341 aagttgaagc gctggcggcg gttatcgcgc tgttcaattc cggctttgac gaagactaaa
    47401 cctccccctc tataccctat ttaccccaac gccgtcccgg tatttgatg
//
LOCUS       DAJVSD010000007        45986 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.007, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000007 DAJVSD010000000
VERSION     DAJVSD010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 45986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 45986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..45986
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.007"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            1..1732
                     /locus_tag="OQP62_000299"
                     /pseudo
     CDS             1..1732
                     /locus_tag="OQP62_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462979.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
     gene            1933..2595
                     /locus_tag="OQP62_000300"
     CDS             1933..2595
                     /locus_tag="OQP62_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02117 family protein"
                     /protein_id="HCS1719945.1"
                     /translation="MKNLFIAWLSLLLYGCTTFPQAVKPTTGGQPSPTEIYIVSHGWH
                     TGIIAPAHDVNTVLPQLKKRFAQETQWYEIGWGDKGFYQSQEITTALTLQAMFWSSGA
                     VMHIVAFSGQPERYFAGSEIKSLLLHTNQRNSLMRYLGRSFARDAEGNLIPLKQGIYG
                     DSQFYAANGRYGILNTCNKWTAKGLESAGLTINPSLKLTAGSVMKAITDHRMCLNKYC
                     YP"
     gene            complement(2641..2853)
                     /gene="rpmE"
                     /locus_tag="OQP62_000301"
     CDS             complement(2641..2853)
                     /gene="rpmE"
                     /locus_tag="OQP62_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HCS1719946.1"
                     /translation="MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFF
                     TGKQRVVDTGGRVERFNKRFSIPGSK"
     gene            3057..5255
                     /gene="priA"
                     /locus_tag="OQP62_000302"
     CDS             3057..5255
                     /gene="priA"
                     /locus_tag="OQP62_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HCS1719947.1"
                     /translation="MSVAHVALPVPLPRTFDYLLPEGGVAKAGCRVRVPFGKQQERVG
                     IVVSVSDHSELPLDELKSVIEILDNEPIFSPSIWRLLLWAADYYHHPLGDVLFHALPV
                     LLRQGKPASNAPLWYWFATEEGQAVDINSLKRSAKQQQALAALRQGKIWRYQVAELDF
                     TDATLQTLRRKGLCELASETPAFTDWREHYAVAGERLRLNTEQATAVGAIHSASDGFS
                     AWLLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERFNTPVEVL
                     HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLFTPFKNLGVIVIDEEHDSSYKQQEGWR
                     YHARDLAVYRAHSEQIPIILGSATPALETLCNVRQKKYRMLRLTRRAGNARPALQHVL
                     DLKGQRLQAGLAPALIARMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDH
                     YYTLHQAQHHLRCHHCDSQRPVPRQCPSCGSTHMLPVGLGTEQLEQVLAPFFPGVPIS
                     RIDRDTTSRKGALEQHLAEVHRGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSA
                     DFRSAERFAQLYTQVSGRAGRAGKQGEVVLQTHHPEHPLLQTLLYKGYDAFAEQALAE
                     RQTLQLPPWTSHVIIRAEDHNNQQAPVFLQQLRNVIQASPLSDDKLWILGPVPALAPK
                     RGGRYRWQILLQHPSRILLQHIISGTLALINTLPEARKVKWVLDVDPIEG"
     gene            5410..6435
                     /gene="cytR"
                     /locus_tag="OQP62_000303"
     CDS             5410..6435
                     /gene="cytR"
                     /locus_tag="OQP62_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CytR"
                     /protein_id="HCS1719948.1"
                     /translation="MKSNKQVTAATMKDVALKAKVSTATVSRALMNPDKVSQSTRSRV
                     EQAALEVGYFPQSMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAAEQGYLVLI
                     GDCAHQNQKEKTFLNLIITKQIDGMVLLSSRLPFDASVEEQRNLPPMVMSNEFAPELE
                     LPTVHIDNLTAAFNAMNYLLDLGHKRIGCIAGPEDMPLCHYRLQGYVQALRRSGIVVD
                     PHYIARGDFTFEAGANALKQLLEQPLPPTAVFCHSDVMALGALSWAKRQGLKVPDDLS
                     IIGFDNIALAEFCDPPLTTVAQPRFDIGREAMLLLLDQMQGQNVSSGSRLMDCELIIR
                     GSTRALP"
     gene            6529..7533
                     /gene="ftsN"
                     /locus_tag="OQP62_000304"
     CDS             6529..7533
                     /gene="ftsN"
                     /locus_tag="OQP62_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HCS1719949.1"
                     /translation="MAQRDYVRRGQPAPSRRKKSTSRNSRKKQSNMPAVSPAMVAIAA
                     AVLVTFIGGLYFITHHKKEESETLQNQKVTGNGLPPKPEERWRYIKELESRQPGVRTP
                     TEPSAGGEVMNPNQLTSEQRQLLEQMQADMRQQPTQLNEVPWNEQTPEQRQQTLQRQR
                     QAQQQQQQQQQQQQQQWAQTQPVQQPRTQPRVNEQPQTRTVQSAPAQPARQSQPPKQT
                     ASQQPYQDLLQTPAHTSAAAPKAAPITRAPEAPKATAEKKDERRWMVQCGSFKGAEQA
                     ESVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTINRLKMAGHTNCIRLATGG
                     "
     gene            7625..8155
                     /gene="hslV"
                     /locus_tag="OQP62_000305"
     CDS             7625..8155
                     /gene="hslV"
                     /locus_tag="OQP62_000305"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HCS1719950.1"
                     /translation="MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVI
                     AGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADET
                     ASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELGAREIAEKALDIAGDIC
                     IYTNHFHTIEELTAKA"
     gene            8165..9496
                     /gene="hslU"
                     /locus_tag="OQP62_000306"
     CDS             8165..9496
                     /gene="hslU"
                     /locus_tag="OQP62_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019841241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HCS1719951.1"
                     /translation="MSEMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEEL
                     RHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD
                     LTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFR
                     KKLREGQLDDKEIEINLAAAPMGVEIMAPPGMEEMTSQLQSIFQNLGGQKQKPRKLKI
                     KDAMKLLVEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREG
                     VQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQVAKPSDLIPELQGRLPIRVELQA
                     LTTSDFERILTEPNASVTVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNETTENIGA
                     RRLHTVLERLMEEISYNASDLHGQNITIDAEYVSKHLDALVADEDLSRFIL"
     gene            9563..10492
                     /gene="menA"
                     /locus_tag="OQP62_000307"
     CDS             9563..10492
                     /gene="menA"
                     /locus_tag="OQP62_000307"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HCS1719952.1"
                     /translation="MTEQQQISRTQAWLESLRPKTLPLAFAAIIVGTALAWWQGYFDP
                     LVALLALITAGLLQILSNLANDYGDAVKGSDKPDRIGPLRGMQKGVITQQEMKRALII
                     TVVLICISGLALVAVACHTLTDFVGFLILGGLSIIAAITYTVGNRPYGYIGLGDISVL
                     VFFGWLSVMGSWYLQAHTLIPALILPATACGLLATAVLNINNLRDINSDRENGKNTLV
                     VRLGDVNARRYHACLLLGALLCLALFNLLSLHSPWGWLFILAAPLLIKQARYVMRERE
                     PAAMRPMLERTVKGALLTNLLFVIGILLSQWAV"
     gene            10585..11070
                     /gene="rraA"
                     /locus_tag="OQP62_000308"
     CDS             10585..11070
                     /gene="rraA"
                     /locus_tag="OQP62_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001392924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E activity regulator RraA"
                     /protein_id="HCS1719953.1"
                     /translation="MKYDTSELCDIYQEDVNVVEPLFSNFGGRSSFGGQIITVKCFED
                     NGLLYDLLEQNGRGRVLLVDGGGSVRRALVDAELARLATQNEWEGLVIYGAVRQVDDL
                     EELDIGIQAIAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI
                     E"
     gene            complement(11292..11531)
                     /gene="zapB"
                     /locus_tag="OQP62_000309"
     CDS             complement(11292..11531)
                     /gene="zapB"
                     /locus_tag="OQP62_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring assembly protein ZapB"
                     /protein_id="HCS1719954.1"
                     /translation="MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSA
                     QHQREELERENNFLKEQQSGWQERLQALLGRMEEV"
     gene            11930..12775
                     /locus_tag="OQP62_000310"
     CDS             11930..12775
                     /locus_tag="OQP62_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin"
                     /protein_id="HCS1719955.1"
                     /translation="MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGATFGQWEI
                     SVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVVPFIISQVAGAFCAAA
                     LVYGLYYNLFVDFEQTHHIVRGSVESLELAGIFSTYPNPHINFVQAFAVEMVITAILM
                     GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKMFAGLAG
                     WGEIAFTGGRDIPYFLVPLFGPIVGAILGAFAYRKFIGRHLPCDICVVEEKDSTAATQ
                     QNASL"
     gene            12796..14301
                     /gene="glpK"
                     /locus_tag="OQP62_000311"
     CDS             12796..14301
                     /gene="glpK"
                     /locus_tag="OQP62_000311"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HCS1719956.1"
                     /translation="MTEKYIVALDQGTTSSRAVVMDHDANIVSVSQREFEQIYPKPGW
                     VEHDPMEIWASQSSTLVEVLAKADISSDQIAAIGITNQRETAIVWERETGKPIYNAIV
                     WQCRRTANICEQLKRDGLEDYIRDNTGLVVDPYFSGTKVKWILDHVEGSRERAKRGEL
                     LFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHDLDWDDKMLDVLDIPRAMLPQVR
                     KSSEVYGQTNIGGKGGTRIPIAGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTG
                     EKAVKSENGLLTTIACGPSGEVNYALEGAVFMAGASIQWLRDEMKLISDAFDSEYFAT
                     KVKDTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNSNHIIRATLESIAYQTRDVL
                     EAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLA
                     VGYWQNLDELQEKAVIEREFRPGIETTERNYRYSGWKKAVKRAMAWEEHDK"
     gene            14413..15423
                     /gene="glpX"
                     /locus_tag="OQP62_000312"
     CDS             14413..15423
                     /gene="glpX"
                     /locus_tag="OQP62_000312"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HCS1719957.1"
                     /translation="MRRELAIEFSRVTEAAALAGYKWLGRGDKNTADGAAVNAMRIML
                     NQVNIDGTIVIGEGEIDEAPMLYIGEKVGTGHGDAVDIAVDPIEGTRMTAMGQANALA
                     VLAVGDKGCFLNAPDMYMEKLIVGPGAKGAIDLNLPLADNLRNIADALGKPLGDLTVT
                     ILAKPRHDEVIAEMAKLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSA
                     AVIRALDGDMQGRLLARHDVKGDSEENRRIGEQELARCKAMGIEAGKALCLGDMARSD
                     NVIFSATGITKGDLLEGISRKGHIATTETLLIRGKSRTIRRIQSIHYLDRKDPDVQAH
                     IL"
     gene            15520..16266
                     /gene="fpr"
                     /locus_tag="OQP62_000313"
     CDS             15520..16266
                     /gene="fpr"
                     /locus_tag="OQP62_000313"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP(+) reductase"
                     /protein_id="HCS1719958.1"
                     /translation="MADWVTGKVTKVQNWTDALFSLTVHAPINPFTAGQFTKLGLEID
                     GERVQRAYSYVNAPDNPNLEFYLVTVPQGKLSPRLAALKPGDEVQVVSDASGFFVLDE
                     VPDCETLWMLATGTAIGPYLSILQYGQDVTRFKNLVLVHAARFAADLSYLPLMLELQQ
                     RYEGKLRIQTVVSRESVPGSLTGRVPALIENGELEKAVGLPMDKETSHVMLCGNPQMV
                     RDTQQLLKETRQMTKHLRRRPGHMTAEHYW"
     gene            complement(16373..16801)
                     /locus_tag="OQP62_000314"
     CDS             complement(16373..16801)
                     /locus_tag="OQP62_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HCS1719959.1"
                     /translation="MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLALFSLAGKNLLDI
                     QTAAFCLVCLLWPTAAVMVKRLHDRGRSGAWALLMILAWMLLAGNWVMLPGMWQWVVG
                     RFIPTLILVMMLIDLGAFVGVQGENKFGKATQDVKFKAEP"
     gene            16902..17498
                     /locus_tag="OQP62_000315"
     CDS             16902..17498
                     /locus_tag="OQP62_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiQ family protein"
                     /protein_id="HCS1719960.1"
                     /translation="MKPGCTLFLLLFSALTASITAHAQLSSSTTTAPYLLAGSPTFDL
                     SISQFRENFNRQNPDLPLNEFRAIENSRDKANLTRAASKINENLYASTALERGTLKVK
                     SMQITWLPIQGPEQKAAKAKALEYMAAIIRTVAPLLTKEQSQKKLQKMLIAGKGKHYY
                     AETEGAVRYVVADNGEKGLTFAVEPIKLALSENLEGAN"
     gene            17611..18378
                     /gene="tpiA"
                     /locus_tag="OQP62_000316"
     CDS             17611..18378
                     /gene="tpiA"
                     /locus_tag="OQP62_000316"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HCS1719961.1"
                     /translation="MRHPLVMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPE
                     MYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYH
                     KESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDTVLKTQGAAAFE
                     GAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKADAKIAEQVIIQYGGSVNASNA
                     AELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA"
     gene            complement(18470..19234)
                     /locus_tag="OQP62_000317"
     CDS             complement(18470..19234)
                     /locus_tag="OQP62_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HCS1719962.1"
                     /translation="MNSQFAGLTREACVALLASYPLSVGILAGQWIALHRYLQQLEAL
                     NQPLLHLDLMDGQFCPQFTVGPWAVGQLPQTFIKDVHLMVADQWAAAQACVKAGAHCI
                     TLQAEGDIHLHHTLSWLGQQTVPVIDGEMPVIRGISLCPATPLDVIIPILSDVEVIQL
                     LAVNPGYGSKMRSSDLYERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRV
                     VSGSALFRDDRLVENTRSWRAMFKVAGDTTFLPSTA"
     gene            complement(19244..19534)
                     /gene="lsrG"
                     /locus_tag="OQP62_000318"
     CDS             complement(19244..19534)
                     /gene="lsrG"
                     /locus_tag="OQP62_000318"
                     /EC_number="5.3.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione
                     isomerase"
                     /protein_id="HCS1719963.1"
                     /translation="MHVTLVEINVHDDKVEQFIDVFRQNHLGSIKEPGNLRFDVLQDP
                     QVPTRFYIYEAYVDEQAVAFHKTTPHYKTCVEQLEPLMTGPRTKKVFMGLMP"
     gene            complement(19617..20492)
                     /gene="lsrF"
                     /locus_tag="OQP62_000319"
     CDS             complement(19617..20492)
                     /gene="lsrF"
                     /locus_tag="OQP62_000319"
                     /EC_number="2.3.1.245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000774144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxy-5-phosphonooxypentane-2,4-dione
                     thiolase"
                     /protein_id="HCS1719964.1"
                     /translation="MADLDDIKDGKDFHTDKPQTNTLFSLKGCGALDWGMQSRLARIF
                     NPRTRKTVMLAFDHGYFQGPTTGLERIDINIAPLFEYADVLMCTRGILRSVVPPAINK
                     PVVLRASGANSILTELSNEAVAVAMDDAVRLNSCAAAAQVYIGSEHEHQSIKNIIQLI
                     DAGLRVGMPIMAVTGVGKDMARDQRYFSLATRIAAEMGAQIIKTYYVDKGFERIAAGC
                     PVPIVIAGGKKLPEREALEMCYQAIDQGASGVDMGRNIFQSEDPVAMIKAVHAVVHHN
                     ETAERAYELFLSEKG"
     gene            complement(20521..21543)
                     /gene="lsrB"
                     /locus_tag="OQP62_000320"
     CDS             complement(20521..21543)
                     /gene="lsrB"
                     /locus_tag="OQP62_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autoinducer 2 ABC transporter substrate-binding
                     protein LsrB"
                     /protein_id="HCS1719965.1"
                     /translation="MARHSIKMIALLTAFGLASAVMTVQAAERIAFIPKLVGVGFFTS
                     GGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPAL
                     KRAMQRGVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYS
                     SPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAII
                     APDANALPAAAQAAENLKRNNLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISV
                     YVANALLKNMPMNVGDSLDIPGIGKVTVSPNSEQGYHYEAKGNGIVLLPERVIFNKDN
                     IDKYDF"
     gene            complement(21572..22547)
                     /gene="lsrD"
                     /locus_tag="OQP62_000321"
                     /pseudo
     CDS             complement(21572..22547)
                     /gene="lsrD"
                     /locus_tag="OQP62_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462957.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autoinducer 2 ABC transporter permease LsrD"
     gene            complement(22544..23587)
                     /gene="lsrC"
                     /locus_tag="OQP62_000322"
     CDS             complement(22544..23587)
                     /gene="lsrC"
                     /locus_tag="OQP62_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autoinducer 2 ABC transporter permease LsrC"
                     /protein_id="HCS1719966.1"
                     /translation="MLKFIQNNREATALLAIVCLFVFLGALDSQYLSVQTLTMVFSSA
                     QILMLLAIGATMVMLTRNIDVSVGSTTGMCAVLLGVMLNAGYSLPVACLATLILGIVA
                     GFFNGVLVAWLKIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAGLKQLSAPVFLGIS
                     AIGWFTLVLALLMAWLLAKTAFGRNFYATGDNLQGARQLGVRTEMVRIMAFSLNGGMA
                     ALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLGGSGTVIGAILGAYFLTQID
                     SVLVLLRIPAWWNDFIAGLVLLGVLVFDGRLRCALQRNLRRQKYARFISPPTPLQAEA
                     KTHAQQNKNKEVA"
     gene            complement(23581..25116)
                     /gene="lsrA"
                     /locus_tag="OQP62_000323"
     CDS             complement(23581..25116)
                     /gene="lsrA"
                     /locus_tag="OQP62_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autoinducer 2 ABC transporter ATP-binding
                     protein LsrA"
                     /protein_id="HCS1719967.1"
                     /translation="MQISHNTASPLICVQNIYKSYSGVEVLKGIDFTLHAGEVHALLG
                     GNGAGKSTLMKIIAGIVPPDGGTIDIAGVRCSHLTPLKAHQYGIYLVPQEPLLFPSLS
                     VRENILFGLQGRQASTEKMQQLLKAMGCQLDPASAAGTLDVADRQIVEIMRGLMRDSR
                     ILILDEPTASLTPAETDRLFTRLQELLKKGVGIVFISHKLPEIRQLAHCVSVMRDGKI
                     ALFRKTHDLSTDEIIQAITPATQGVSLSASQKLWLELPGSRPQNERGATVLALESLTG
                     EGFMNINLEVRAGEILGLAGLVGAGRTELAETLYGIRPVNAGRMLFNGEEINALTTQQ
                     RLQLGLVYLPEDRQSSGLYLDASLAWNVCSLTHNQKGFWIKPQRDNATLERYHRALNI
                     KLNNAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARSDIYQLLRSIA
                     QQNVAVLFISSDLEEIEQMADRVYVMHQGELGGPALCGEEINVDTIMHVAFGEHGASE
                     ATC"
     gene            25372..26331
                     /gene="lsrR"
                     /locus_tag="OQP62_000324"
     CDS             25372..26331
                     /gene="lsrR"
                     /locus_tag="OQP62_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LsrR"
                     /protein_id="HCS1719968.1"
                     /translation="MSDNTLVSDYGMCEEEQVARIAWFYYHDGLTQSEISERLGLTRL
                     KVSRLLEKGHQSGIIRVQINSRFEGCLEYENALRNHFALQNIRVLPALPDADIGLRLG
                     IGAAHMLMESLRPQQLLAVGFGEATMTTLKRLSGFISAQQIRLVTLSGGVGPYMTGIG
                     QLDAACSVSIMPAPLRASSQEIACTLRNENSVRDVMLTAQAADAAIVGIGAINQKDQA
                     SILKSGYITQGEQLMIGRKGAVGDILGYFFDAHGEIIPDIKIHNELIGLKLNSLSTIP
                     TVIGVAGGEQKAEAIIAAMRGNYINALVTDQKTAGKIIQLIEK"
     gene            26418..28010
                     /gene="lsrK"
                     /locus_tag="OQP62_000325"
     CDS             26418..28010
                     /gene="lsrK"
                     /locus_tag="OQP62_000325"
                     /EC_number="2.7.1.189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autoinducer-2 kinase"
                     /protein_id="HCS1719969.1"
                     /translation="MARLCTHTESGHYLMALDAGTGSVRAVIFDLQGKQIAVGQAEWQ
                     HLAVPDVPGSMEFDLAKNWQLACQCIRQALQKAAIPATAIAAVSACSMREGIVIYDSN
                     GEPIWACANVDARAAHEVSELKELHDNTFEEEVYRCSGQTLALSAIPRLLWLAHHRPD
                     IYHRASTVTMISDWMAFMLSGELAVDPSNAGTTGLLDLVTRNWKRSLLQMAGLRSDIL
                     SPVKETGTLLGHISQKAAEQCDLQAGTPVIVGGGDVQLGCLGLGVVRPAQTAVLGGTF
                     WQQVVNLPAPVTDPNMNVRINPHVIPGMVQTESISFFTGLTMRWFRDAFCAEEKLIAE
                     RLGIDAYSLLEDMASRVPPGAHGVMPIFSDVMRFKRWYHAAPSFINLSIDPEKCNKAT
                     LFRALEENAAIVSACNLQQIAAFSGVQADSLVFAGGGSKGKLWSQILADVTGLTVHVP
                     VVKEATALGCAIAAGVGVGIWPSLAETGEKLVRWDREHKPNPENFAVYQQAREKWQAV
                     YQDQRALVDGGLTTSLWKAPGL"
     gene            28024..28305
                     /locus_tag="OQP62_000326"
     CDS             28024..28305
                     /locus_tag="OQP62_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001173084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HCS1719970.1"
                     /translation="MQKTNEKNHEYRFSDNGPKYLIRGPGCDMGVVILQPGQSFPNHR
                     HNTACEVFYTLSGEVCLYLEGTPHILQTGDVLQCEPGEAHYLINNGDKP"
     gene            complement(28464..28604)
                     /locus_tag="OQP62_000327"
                     /pseudo
     CDS             complement(28464..28604)
                     /locus_tag="OQP62_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462945.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol diphosphatase"
     gene            complement(28611..28781)
                     /locus_tag="OQP62_000328"
     CDS             complement(28611..28781)
                     /locus_tag="OQP62_000328"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1719971.1"
                     /translation="MSLWLSYPLILPSIIVGITILLWATSLLPEFMTALLFFAAVVAM
                     GPGKVPARAGMQ"
     gene            complement(28879..29601)
                     /locus_tag="OQP62_000329"
     CDS             complement(28879..29601)
                     /locus_tag="OQP62_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1719972.1"
                     /translation="MQVDKTSFTPLYKQLFFIICQQIQNGSLPLGSQLPTQKEIARSY
                     NVSLIVVKQAWSELINAGIISSQRGSGSVVCSVPEGVSYGHTFRGITRDLQDASVAIE
                     NRILEIAPRRARDAQADGLSLPAQHHYLYISRIRCLNNRPFNHEKIYLDLSFFPDLQL
                     TPQALEHTSLYSLLNVTSDSAIEKVEAILPSADLCEKLQIAPNKPLLSVARQTFQAGK
                     DSPFEYCRYYVLSEYFGEIHYH"
     gene            complement(29664..30704)
                     /locus_tag="OQP62_000330"
     CDS             complement(29664..30704)
                     /locus_tag="OQP62_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribosylglycohydrolase family protein"
                     /protein_id="HCS1719973.1"
                     /translation="MHVDQNKILGCLVGAAAADAMGAATEVRTQQQIKDYFGGWVTTF
                     QKPPADTFGRCNEAGMCTDDFIQAKYIMDALLRHQREVSDEAMREAFQQWLDYPYYAN
                     FTGPTTRAAMKAIFNDNRASLQGELEGEKQSVQIINKGNAEATNGAAMKIWPAAVLHP
                     GDIDAAIDCALQICRFTHNNVLAMSGAAAMAAATSEALRAQTNADSIIAAGIYGAQRG
                     YLLAQEQGAMMVAGPSVARRIELAVDIGKRHRHWETAIVDIADIIGSGLHVSEAVPAA
                     FGLFACCPNSAVDAIISGVNIGNDTDTVATMVGAISGAFHGVEAFPADYLTTLDRMNH
                     FDLAELARQIAG"
     gene            complement(30714..31673)
                     /locus_tag="OQP62_000331"
     CDS             complement(30714..31673)
                     /locus_tag="OQP62_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoimidazole riboside kinase"
                     /protein_id="HCS1719974.1"
                     /translation="MKAMNKVWVIGDASVDLVPEKQNSYLKCPGGASANVGVCVARLG
                     GECGFIGCLGDDDAGRFLRQVFQDNGVDVSSLRLDAALTSAVLIVNLTADGERSFTYL
                     VHPGADTYVSPQDLPPFRQHEWFYFSSIGLTDSPAREACLEGARRMREAGGYVLFDVN
                     LRSKMWRNTDEIPELIARSAALASICKVSADELCQLSGASHWQDARYYLRDLGCDTTI
                     ISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTLSRANCWDHALLAEA
                     ISNANACGAMAVTAKGAMTALPFPDQLNTFLSSHSLAQAMTVK"
     gene            complement(31684..33018)
                     /locus_tag="OQP62_000332"
                     /pseudo
     CDS             complement(31684..33018)
                     /locus_tag="OQP62_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462946.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(33284..34039)
                     /locus_tag="OQP62_000333"
     CDS             complement(33284..34039)
                     /locus_tag="OQP62_000333"
                     /EC_number="3.6.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol diphosphatase"
                     /protein_id="HCS1719975.1"
                     /translation="MKKTGYFLLAVIVIVAAAGVGYWKFSGNPDALREIVLERCLPDQ
                     LQHQNPAPCAEVKPRAGYVIFKDRHGPLQYLLMPTYRINGTESPLLLEPATPNFFWLA
                     WQARGYMSKKYGHDIPDSAVSLAINSRLGRSQDHLHIHISCIRPDVREQLDNDLTRIS
                     TRWLPLPGDLMGHEYLARRVTESELAQRSPFMMLAEEVPEARDHMGRYALAVVRQSDD
                     SFVLLATERNLLTLNRASAEEIQDHSCAILSSR"
     gene            complement(34140..35129)
                     /locus_tag="OQP62_000334"
     CDS             complement(34140..35129)
                     /locus_tag="OQP62_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1719976.1"
                     /translation="MKKWGVGFTLLLASTSILAKDIQLLNVSYDPTRELYEQYNKAFS
                     AHWKQETGDNVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKNWI
                     KRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAW
                     GYALHHNNNDQAKAQDFVKALFKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLA
                     TNELGKDKFEIVTPSESILAEPTVSVVDKVVEKKGTNAVAEAYLKYLYSPEGQEIAAK
                     NFYRPRDADVAKKYDDAFPKLKLFTIDEVFGGWVKAQKDHFANGGTFDQISKR"
     gene            complement(35333..36295)
                     /gene="pfkA"
                     /locus_tag="OQP62_000335"
     CDS             complement(35333..36295)
                     /gene="pfkA"
                     /locus_tag="OQP62_000335"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014072359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HCS1719977.1"
                     /translation="MIKKIGVLTSGGDAPGMNAAIRGVVRAALTEGLEVMGIYDGYLG
                     LYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIG
                     GDGSYMGAKRLTEMGFPCIGLPGTIDNDIKGTDYTIGYFTALGTVVEAIDRLRDTSSS
                     HQRISIVEVMGRYCGDLTLAAAIAGGCEFIVVPEVEFNREDLVAEIKAGIAKGKKHAI
                     VAITEHMCDVDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLL
                     LEGHGGRCVGIQNEQLVHHDIIDAIENMKRPFKSDWMECAKKLY"
     gene            complement(36480..37376)
                     /gene="fieF"
                     /locus_tag="OQP62_000336"
     CDS             complement(36480..37376)
                     /gene="fieF"
                     /locus_tag="OQP62_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462942.1"
                     /note="FieF, a metal efflux transporter, is a member of
                     the CDF (cation diffusion facilitator) family of
                     transporters; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter FieF"
                     /protein_id="HCS1719978.1"
                     /translation="MNQTYGRLVSRAAIAATAMASALLLIKIFAWWYTGSVSILAALV
                     DSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQSMFISGSALFLTSIQN
                     LIKPTPMNDPGVGIGVTVIALICTIILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNG
                     AILIALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDAERQEIID
                     IVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDNLPLVQAHFVADQVEQAILRRFPGS
                     DVIIHQDPCSVVPREGRKFELV"
     gene            complement(37524..38024)
                     /gene="cpxP"
                     /locus_tag="OQP62_000337"
     CDS             complement(37524..38024)
                     /gene="cpxP"
                     /locus_tag="OQP62_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell-envelope stress modulator CpxP"
                     /protein_id="HCS1719979.1"
                     /translation="MRKVTAAVMASTLAFSFLSHAAEVVTSDNWHPGDGATQRSAQNH
                     MFDGISLTEHQRQQMRDLMQQARHEQPPVNVSEMETMHRLVTAEKFDESVVRAQAEKM
                     AQEQVARQVEMARVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVAQWQKSSSLKLLSS
                     SNSRSQ"
     gene            38175..38873
                     /gene="cpxR"
                     /locus_tag="OQP62_000338"
     CDS             38175..38873
                     /gene="cpxR"
                     /locus_tag="OQP62_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response regulator transcription
                     factor CpxR"
                     /protein_id="HCS1719980.1"
                     /translation="MNKILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDS
                     IDLLLLDVMMPKKNGIDTLKALRQTHQTPVIMLTARGNELDRVLGLELGADDYLPKPF
                     NDRELVARIRAILRRSHWSEQQQSSDNGSPTLEVDALSLNPGRQEASFDGQTLELTGT
                     EFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWF
                     KTLRGRGYLMVSAS"
     gene            38870..40243
                     /gene="cpxA"
                     /locus_tag="OQP62_000339"
     CDS             38870..40243
                     /gene="cpxA"
                     /locus_tag="OQP62_000339"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress sensor histidine kinase CpxA"
                     /protein_id="HCS1719981.1"
                     /translation="MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQR
                     QGLMIEQHVEAELANDPPNDLMWWRRLFRAIDKWAPPGQRLLLVTSEGRVIGAERSEM
                     QIIRNFIGQADNADHPQKKKYGRVEMVGPFSVRDGEDNYQLYLIRPASSSQSDFINLL
                     FDRPLLLLIVTMLVSSPLLLWLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEF
                     LAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRGGESKELER
                     IETEAQRLDSMINDLLVMSRNQQKNALVSETMKANQLWGEVLDNAAFEAEQMGKSLTV
                     NYPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFSVDKDGITITVDDDGPGVS
                     PEDREQIFRPFYRTDEARDRESGGTGLGLAIVESAMQQHRGWVKADDSPLGGLRLTLW
                     LPLYKRT"
     gene            complement(40294..40689)
                     /locus_tag="OQP62_000340"
     CDS             complement(40294..40689)
                     /locus_tag="OQP62_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HCS1719982.1"
                     /translation="MTEAENAVAIVKEFLVASMIPDAERAATYMHPEVKITFTGGRAM
                     AGAADIAQFNGARYKWVKKALGKFDAVQHDDYVVIYSNGTLYGEWPDGRPFADNRFID
                     RFEVRDGKITRMDVWNDSAEWILAPDISR"
     gene            complement(40701..41390)
                     /gene="yiiM"
                     /locus_tag="OQP62_000341"
     CDS             complement(40701..41390)
                     /gene="yiiM"
                     /locus_tag="OQP62_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000559227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-N-hydroxylaminopurine resistance protein"
                     /protein_id="HCS1719983.1"
                     /translation="MHYPVDVFIGKIRDYDGSRPSAIAKVQIDGELMLTELGLAGDQQ
                     AEKKIHGGPDRALCHYPREHYADWIRQFPEQATLFCAPAFGENLSTDGMTEHNVFIGD
                     IYRWGEALIQVTQPRSPCFKLNFHFAISDMALLMQNSGKTGWLYRVIAPGKVSSDAPL
                     ELASRLSDVSVHEAGVIAWSMPFDDEQYHRLLSAAGLSASWSRTMQKRRLSGKIEDSA
                     RRLWGDKTPPK"
     gene            complement(41460..42080)
                     /gene="sodA"
                     /locus_tag="OQP62_000342"
     CDS             complement(41460..42080)
                     /gene="sodA"
                     /locus_tag="OQP62_000342"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010345169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Mn]"
                     /protein_id="HCS1719984.1"
                     /translation="MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALE
                     NLPEFADLPVEELITKLDQVPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA
                     IERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGAS
                     GFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK"
     gene            42409..43391
                     /locus_tag="OQP62_000343"
                     /pseudo
     CDS             42409..43391
                     /locus_tag="OQP62_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462935.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
     gene            43410..43925
                     /locus_tag="OQP62_000344"
     CDS             43410..43925
                     /locus_tag="OQP62_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HCS1719985.1"
                     /translation="MNTFRKGLDLLLGAICCLVLAIMVGIACWQVVSRYILGVPSTLT
                     EEMLRFLLVWVSMLGMAFVAGQKQHISLTILLDKVSPTIRGWWDIILQVIFIAFSIWV
                     LIIGGLKISAISMLQISPALGIPMGKIYYALPCAGILIILYGLLNIVDALKAIHSATD
                     TTEHTLEKSHD"
     gene            43918..45225
                     /locus_tag="OQP62_000345"
     CDS             43918..45225
                     /locus_tag="OQP62_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HCS1719986.1"
                     /translation="MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFD
                     ISMFATAQKMFSSLDSFALLAVPFFVLSGVIMNSGGIAARLVNFAKLFTGKLPGSLSY
                     TNIVGNMMFGAISGSAIAASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPT
                     TAFILYALASGGTSIAALFAGGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMAL
                     KVAVEAIPSLLLIVIIVGGIVQGIFTAIEASAIAVVYTLLLTIVFYRTLKIKDLPSIL
                     LQTVVMTGVIMFLLATSSAMSFSMSITNIPAALSDMILGISANKLVILLVITVFLLII
                     GAFMDIGPAILIFTPILLPIMTKLGVDPVHFGIIMIYNLAIGTITPPVGSGLYVGASV
                     GKVKVEDVIKPLMPFYGAIIGVLLLITYIPEITLFLPRLLGIM"
     gene            complement(45381..>45986)
                     /locus_tag="OQP62_000346"
     CDS             complement(45381..>45986)
                     /locus_tag="OQP62_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462932.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1719987.1"
                     /translation="VRHEYLDDSKANYDRAYISHRFANGVGFAIEAISKSGGDDTNKA
                     FNDLETQGNEYTISYQFKTGDVAWQPGFVLETGNGYSTYKPYFRATWTLNESWWVGAR
                     YRFEYVRRSSDIRDDDTINRMDVWAGYKWNNFDWTIEGIYKKADKYDLYDGGKDNYEY
                     NFRTAYIIDQWSPFVEVGNVSVNSNSDERQTRFRVGIGYTF"
BASE COUNT        11377 a        12342 c        11752 g        10515 t
ORIGIN      
        1 ttttggcctc aggcgtttta gacccaaaca ggccaatggt cgcatcagca gatgtcattc
       61 cagtacatga agggccatta ggtatggtcg atgtcgcccc ctacggcggc gttttcccat
      121 taacagcaat cattaataaa gccaatcata atgtacagaa cgtgaaggtt accgttttag
      181 ggaaagggga aaaaggtatc cctatcagtt atgatgtcgg cccgcaggct ataaataccc
      241 atgacggcat acctgtattt ggcttgtatc cagattatgt caataaggtt aaagttgact
      301 ggactgaaga aggtaaaaaa caaacttata cgtggtccat ttacgccgca ccggtatcat
      361 taccctctac taccgggcaa actgccgttc ttcctacggt agaaccggtt aaagtcgata
      421 gctcgcttaa aaatcgctta tatcttttta accatataac ggggatgcca agggcaggcc
      481 acattatgca tgtcgcaggc ggcgcggcga actgggatta taccggtatc aactggatta
      541 gcgatacgaa tggcgatgtt cgcggctata tgaatattga taaattccgt aaccaggatg
      601 atataacgcg ctttggttcc atgatgggct tccatcaggt taacgatggc aatcttattt
      661 ttggccaggg tcaacgttac tttaaatatg atttcttagg ccgcgttatt tccgataaac
      721 gactgccaaa aggatttatt gatttttcgc acgccattac cgaaacgccg aaaggcacct
      781 acctgctgcg tgtcgcaaaa gaaaattatc cattaaatgg taaatacacc atcaatactg
      841 tgcgtgatca tattcttgaa gttgaccaga acggcgatac cgtcgattac tgggatctgc
      901 caaaaatcct cgacccctat cgtgacgatg ttattctggc gatggatcag ggagcggtat
      961 gtttgagcgt cgatgccgaa cattccggtc aggtcatgac caaagagcag cttgcaaaac
     1021 aacccttcgg cgatatcgcg ggctccggcc cgggccgcaa ctgggcgcat gttaactccg
     1081 tcagctacga tcctcgcgac gacagcatta tcattagctc gcgccaccag tctgccatca
     1141 tcaaaattgg ccgcgataaa aaagtgaaat ggatactttc cgatccatcc ggctggaaag
     1201 gcgaactggc gaaaaaagtg ctgaaacccg tagacagcaa cggtaaaccg ctaacctgcg
     1261 aagcgcacca ctgcgacggt ggatttgact ggacatggac acaacatacc ggttggttag
     1321 tgccatccaa aagcaccgga ggtaaaaccg tcgtgaccgc ctttgataac ggcgatgcgc
     1381 gcggcatgga acaaccggcc atgccgtcaa tgaaatattc ccgcggcgtg gaatatcaga
     1441 ttgacgaaaa aatatgacgg tttcccaaat gtgggaatat ggtaaagagc gcggttttga
     1501 ctggtacagc gccattactt ccgtcacgga atatcgcccg gaaaccaaaa cgatgttcat
     1561 gtactcggcc acagcgggaa tgagcggtac aaatccaatc gtttccgttc tggatgaagt
     1621 caaagacggt actcaggatg tgatgctgga gctaaaagta cacagtaacc gtgctggtat
     1681 gctgggttat cgggcgctga ttatcgatcc agagcagatg tttaaaaaat aaagcgtgag
     1741 agtaaaagta aaacaggcgg aagccaactt ccgcctgaat ggttaaaacg tattgtagtt
     1801 atgacattcg ccttattgcc ctcggagagg aatgcaaaaa tatcaatgaa ttaccaatcc
     1861 ggcaccgacc cgataagcgc agcgtcatta gacaaacgcc acaacatacc gcgcctttgc
     1921 tggtgatatg tcatgaaaaa tctctttatc gcctggttaa gtttattgct atatggctgc
     1981 acaacctttc cacaagccgt aaaacctacg acaggcggac agccctcccc gacggaaatc
     2041 tatatcgtca gtcatggctg gcacacggga attattgcgc cggcccatga tgttaatacc
     2101 gttctgccac agcttaaaaa acggttcgct caggagacgc agtggtatga aatcggctgg
     2161 ggcgataagg gcttttatca gtcacaagaa ataaccaccg cgcttacgct ccaggccatg
     2221 ttctggtcat ccggcgcggt tatgcacatc gtcgcctttt ccggtcaacc agaacgctat
     2281 ttcgccggta gcgagataaa atcactgctc ctgcacacaa accagcgtaa cagtctgatg
     2341 cgttatctgg gccgcagctt tgcgcgtgac gcagagggta atctgattcc gttaaaacaa
     2401 ggaatttacg gcgatagcca gttttacgcc gcgaatggcc gctacggcat actcaatacc
     2461 tgcaataaat ggacagcgaa ggggctggaa agcgcgggac tgactataaa tccttcgtta
     2521 aaactcacgg caggaagcgt aatgaaagcg attacggatc acagaatgtg tctgaacaaa
     2581 tactgttatc cctagaaaac aaaaaaagcg ccctgcggcg cttttttttc tggcggtaac
     2641 ttatttgctg ccagggatgc tgaagcgctt gttgaagcgc tcaacacgac caccggtatc
     2701 aacaacacgc tgcttaccag tgaagaacgg gtggcatttg ccgcacacgt ccaggttcag
     2761 gtcgtgaccc acggtagagt gggttttgat aacattaccg caagaacagg ttgcagtaat
     2821 ttctacgtaa ttcgggtgaa tacctttttt catggggaac ctcagtgtaa ggccgcgtcg
     2881 ctcttccagc cctaacgcca gacaccacgc gaagttaata gtaaagggtt tgatgctcac
     2941 aacacgcacc aaaggcggcg aatcatacag aatttgacca ccgtatgcaa actgatccgc
     3001 gctcccttat cgtaatgtgt atactacccg acgaaatttc aagtcaggaa gatgctatgt
     3061 ccgtcgcgca cgttgccttg cccgttccgc ttccccgaac ctttgattac ctgctgccgg
     3121 aaggcggggt cgccaaagcc gggtgccgcg tgcgcgtgcc gttcggcaag cagcaagagc
     3181 gcgtgggcat tgtcgtctcg gttagcgacc acagcgaatt gccgctcgat gaattaaaat
     3241 cggtcattga aatcctggat aacgagccaa tcttttctcc ctccatctgg cgcttactcc
     3301 tctgggcggc ggattactac caccatcccc tcggcgacgt tctgtttcac gctctgccgg
     3361 ttttactgcg tcagggaaaa ccagccagca acgcgcccct atggtattgg ttcgccaccg
     3421 aagaggggca agccgtcgac atcaacagcc tgaaacgctc cgccaaacaa caacaggcgc
     3481 tggcggcgct gcggcaagga aagatctggc gctatcaggt agccgagctt gattttactg
     3541 acgccacgct gcaaacgctg cggcgtaagg ggctttgtga gcttgccagt gaaacgcccg
     3601 cgtttaccga ctggcgggag cattatgccg tcgcaggaga gcgcctgcgg ctaaataccg
     3661 aacaggcgac agcagtcggc gcaattcaca gcgcgtcgga cggtttctcc gcctggttgc
     3721 tggcaggcgt aaccggttcc ggcaagaccg aagtgtatct gagcgtgctg gaaaacgtcc
     3781 tcgcccaggg caaacaggcg ctggtgatgg tgccggaaat cggcctgacg ccgcaaacga
     3841 tcgcccgttt tcgcgaacgt tttaacacgc cggtggaagt gctgcattcc gggctaaacg
     3901 acagcgagcg tctttcggca tggctgaaag cgaaaaacgg cgaagcggcg attgtcatcg
     3961 gcacgcgctc ctcgctgttt acgccgttta aaaatcttgg cgtaattgtc atcgacgaag
     4021 agcacgacag ctcttataaa cagcaggaag ggtggcgcta ccatgcccgc gatttggcag
     4081 tgtatcgcgc ccatagcgag cagatcccga ttattctcgg ctccgccacc ccagccctgg
     4141 aaacgctatg caacgtgcgg cagaaaaaat accggatgct gcgtctgacg cggcgcgcag
     4201 gcaacgcccg cccagccctg cagcatgtgc tggatttaaa aggacagcgt cttcaggcgg
     4261 gactggcgcc cgcccttatc gcccgtatgc gccaacatct ccaggccgat aatcaggtaa
     4321 ttttatttct taaccgccgg ggattcgcgc ccgcgctgct ttgccacgac tgcggctgga
     4381 ttgcggagtg cccgcgttgc gatcactact acacgctgca ccaggcgcag catcatttac
     4441 gctgccatca ctgcgacagc cagcgtccgg taccgcgtca gtgcccctcc tgcggctcca
     4501 cacatatgct accggttggg ttagggaccg aacagctgga gcaggtgctg gcgcccttct
     4561 tccccggcgt gccgatctca cgaatcgacc gtgataccac cagtcgtaaa ggcgcgctgg
     4621 agcagcatct ggcggaagtt caccgcggcg gagcgcgcat tctgataggc acacaaatgc
     4681 tggcgaaagg ccatcacttc ccggacgtca cgctggtggc gttgctggat gtcgatggcg
     4741 cgcttttttc cgcagatttt cgttcggcgg aacgcttcgc ccagctctac actcaggttt
     4801 ccggccgcgc cgggcgcgcg ggtaaacagg gcgaagtggt gctccaaacg caccatcctg
     4861 agcatcccct gctgcaaacg ttactgtata aaggctatga tgcgtttgcg gaacaggcgc
     4921 tggcggaacg gcaaacgctc cagcttccgc cgtggaccag ccacgtcatt attcgcgcag
     4981 aggatcacaa caatcagcag gcgcccgtct ttctccagca gttgcgtaat gtgattcagg
     5041 ccagcccgct atcagacgat aagctgtgga tcttaggtcc ggttccggcc ctcgcgccaa
     5101 aacgcggcgg ccgctatcgc tggcaaattt tacttcagca tccttcacgg attctcctgc
     5161 aacacatcat cagcggcacg ctggcgttga tcaatacgct ccctgaagcg cggaaagtta
     5221 aatgggttct ggacgtcgat ccgattgaag gatagtcccc acgatgcgag gcggatcgta
     5281 aaattaaaga tccatcacac tttttatgaa aattctgtaa ccgcttccac gcactatctg
     5341 ataaaaatgt tttcgatgag tgttaccagg gatagatctg cgccagcagt tcccaggcga
     5401 ggagaaagag tgaaatcgaa caagcaggtt actgccgcta cgatgaagga tgttgcgttg
     5461 aaggcgaaag tctctacggc aaccgtatcc cgcgcgttaa tgaaccccga taaagtctcc
     5521 cagtcgaccc gtagccgggt tgaacaggcc gcgcttgaag tgggttattt cccgcagtcg
     5581 atggggcgaa atgtaaaacg caatgaatcc cgtacgattt tggtgattgt cccggatatt
     5641 tgcgatccct tcttcagtga aattatccgc ggtatcgaag tgaccgcggc agaacagggg
     5701 tatctggtgc tgattggcga ttgtgcccat caaaaccaga aagaaaaaac ctttcttaat
     5761 ctcatcatca ccaaacagat cgacggcatg gtactgctca gttcccgact gccctttgac
     5821 gccagcgttg aggagcagcg caatttgcct ccgatggtga tgtcgaatga gtttgcgccg
     5881 gagcttgaat tgccgacggt acatatcgat aacctgaccg ccgcgttcaa tgccatgaac
     5941 tacctgttgg atttgggcca caagcggatt ggttgtattg cggggccgga agatatgccg
     6001 ctctgtcact atcgcttaca aggttacgta caggcattaa gacgcagtgg cattgtggtc
     6061 gatccgcatt acatcgcccg tggcgacttt acctttgaag ccggggcaaa cgcattaaag
     6121 cagttgcttg agcaaccgtt gccgcctacc gccgtctttt gtcatagcga cgtaatggcg
     6181 ctgggcgccc tctcctgggc caagcgccag ggtctgaaag tgcctgacga tctgtcgatt
     6241 atcggctttg acaatatcgc gctggccgag ttttgcgacc ctccgttgac aaccgtggcg
     6301 cagccgcgtt ttgacattgg tcgcgaggcg atgctgctgt tgctcgatca gatgcagggg
     6361 caaaatgtga gcagcggctc gcgtttaatg gattgcgagc tgattattcg cggttctaca
     6421 cgcgctttac cctaaagtaa atagctttaa gactcacctg tctggtcaaa ggcccgccgc
     6481 ttcagtaaca tgacgggctg acgaacgaat aaatacagcg aaacgatagt ggcacaacga
     6541 gattatgtac gtcgcggcca accggctcct tcgcggcgca aaaagagcac ctcacggaac
     6601 tcacggaaga agcaaagcaa catgcctgcc gtctcgccgg caatggtcgc gattgcggca
     6661 gccgtccttg tgacctttat cggcggtctg tacttcatta ctcaccataa gaaagaagag
     6721 tccgaaacgc tacaaaacca gaaagtcacc ggcaatgggc ttccgccaaa accggaagag
     6781 cgctggcgtt acatcaaaga gctggaaagt cgccagccgg gcgtgcgtac gccaacggaa
     6841 ccgtccgccg gcggcgaagt catgaatccg aatcagctca ccagcgagca gcgtcaactc
     6901 ctggagcaga tgcaggcgga tatgcgtcag cagccgacac aacttaacga agtgccgtgg
     6961 aacgagcaga cgccagaaca acgccagcaa acgctacagc gccagcgtca ggcgcagcag
     7021 cagcagcagc agcagcagca gcagcagcag cagcagtggg ctcaaacgca gcctgttcag
     7081 caaccacgca cgcagccgcg ggtaaacgaa cagccgcaaa cgcgcacggt acagtccgcc
     7141 ccggcgcaac ccgcgcgcca aagtcagccg ccgaagcaga cggcctcgca gcaaccttat
     7201 caggatttgc tgcaaacgcc ggcgcatacc agcgcggcag cgccaaaagc cgcgcccatt
     7261 acgcgcgcgc ctgaagcgcc gaaggcgaca gcagagaaaa aagatgaacg tcgctggatg
     7321 gtgcaatgtg gttcattcaa aggcgccgag caggcagaaa gcgtccgcgc tcagctggcg
     7381 tttgaaggct ttgactccaa aattaccacc aataacggct ggaatcgcgt ggttatcggg
     7441 ccggtgaaag gtaaagaaaa tgccgacagc accattaacc gtctgaagat ggcgggccat
     7501 acaaactgca ttcgactcgc caccgggggt tgaaaccctc aaaatctccc ccatctatac
     7561 ttgcattatg ccccgtacgc cgtacggggc cgcaattcag cattagtaac caaggggtct
     7621 gctcgtgaca acaatagtaa gcgtacgccg taacggccac gtggtaatcg ccggtgatgg
     7681 tcaggccaca ctgggtaaca cagtaatgaa aggcaacgtg aagaaagtcc gccgcctcta
     7741 caacgacaag gtcattgcgg gctttgcggg cggtactgct gatgcattca cgctgttcga
     7801 gctgtttgaa cgtaaactgg aaatgcatca ggggcacctg gtcaaagccg ccgttgaact
     7861 ggcgaaagac tggcgtaccg accgtatgct acgcaaactg gaagcgttgc tggccgtcgc
     7921 ggatgaaacc gcttcgctca tcatcacggg taacggcgat gtcgtgcaac ctgaaaacga
     7981 tttaattgct atcggctccg gcggtcctta tgcccaggct gccgctcgcg ctctgttgga
     8041 aaataccgag ctcggcgcgc gcgaaattgc tgaaaaggcg ttggatattg caggcgatat
     8101 ctgcatttac accaaccatt tccacaccat tgaagaattg accgccaaag cgtaaggacc
     8161 tctcatgtct gaaatgaccc cacgcgaaat tgtcagcgaa ctgaacaaac acattatcgg
     8221 ccaggataac gcaaagcgtt ccgtggcgat tgcattgcgt aaccgctggc gtcgtatgca
     8281 gcttgatgaa gagctgcgcc acgaagtaac gccgaaaaat attctgatga ttggcccgac
     8341 cggcgtcggt aaaaccgaaa tcgcccgtcg tctggcaaaa ctcgccaacg cgccgttcat
     8401 taaagtcgaa gccaccaaat tcaccgaagt gggctatgtc gggaaagaag tggactctat
     8461 catccgcgat ctgaccgatg ccgctgtgaa aatggttcgc gtacaggcta tcgagaaaaa
     8521 ccgctatcgt gcggaagagt tggcggaaga gcgtattctc gacgtactga tcccacccgc
     8581 aaaaaataac tggggccagg ccgaacagca gcaggagcct tctgccgccc gtcaaacgtt
     8641 ccgcaaaaaa ctgcgcgaag gccagctcga cgataaagag atcgagatta acctcgccgc
     8701 cgcgccgatg ggcgtagaga ttatggcgcc tccgggcatg gaggagatga ccagccagtt
     8761 gcagtctata ttccagaacc taggcggtca gaaacagaaa ccgcgtaagc tgaaaattaa
     8821 agacgcgatg aaactgttgg ttgaagaaga agctgctaag ctggtcaacc cggaagagct
     8881 gaaacaggac gctatcgacg cggttgaaca gcacggcatc gtgtttatcg atgaaattga
     8941 caaaatttgt aagcgtggcg aaacctccgg cccggatgtt tcacgcgaag gcgtacagcg
     9001 cgacttactg ccgctggtag aaggctgcac ggtttcgacc aaacacggga tggtcaaaac
     9061 ggatcatatt ctgtttatcg cctctggcgc gttccaggtg gcgaagccgt ctgatctgat
     9121 cccggaactg cagggccgtc tgccgattcg cgttgaactt caggcgctga ccaccagcga
     9181 tttcgaacgc attttgaccg agccaaacgc ctccgtcact gtgcagtata aagcgctgat
     9241 ggcaactgaa ggcgtcaata tcgagttcac cgattccggt attaaacgta ttgccgaagc
     9301 cgcctggcag gttaacgaaa ccaccgaaaa catcggcgcg cgccgtctgc ataccgtact
     9361 ggagcgtctg atggaagaaa tttcctataa cgccagcgat ttgcacggcc aaaacatcac
     9421 aattgatgcg gaatatgtga gcaaacatct ggatgcgctg gtcgcagatg aagatctaag
     9481 ccgttttatc ttataatcgc gtccaatgca ttttcatcac tgttgatggg gctgaaaagc
     9541 cccattttta ttggcgctaa atatgactga acaacaacaa attagccgca cccaggcctg
     9601 gctggaaagc ttacgaccca aaaccttacc tctcgccttc gcggcgatta tcgtcggtac
     9661 ggccctggca tggtggcaag gctatttcga tcctctggtc gcactgctgg cccttatcac
     9721 cgccgggctg ttgcaaattt tatccaacct cgccaacgat tacggcgacg ctgtcaaagg
     9781 cagtgataaa ccggatcgca tcggaccgct gcgggggatg caaaaaggcg tcatcaccca
     9841 gcaggagatg aagcgggcgt taatcattac cgtcgtgctg atctgtatct ccggactggc
     9901 gctggtggcg gtcgcgtgcc atacgttaac cgattttgtc ggcttcctga ttttgggcgg
     9961 gctgtcgatt atcgccgcca tcacctacac cgtgggtaat cggccctacg gttatatcgg
    10021 gctgggtgat atctctgtcc tggtattctt tggctggcta agtgtcatgg ggagctggta
    10081 tctccaggcg catacgctga ttccggcgct gattctcccg gccaccgcct gcggtttact
    10141 ggcgacggcg gtgctgaata ttaataacct gcgcgatatt aatagcgaca gagagaacgg
    10201 caaaaacacc cttgtggtac gacttggcga tgtcaacgcg cgtcgttatc acgcctgcct
    10261 gttgctaggc gcgctgctct gtctggcgct gtttaatctg ctctcgctac acagtccgtg
    10321 gggatggttg tttattctgg ccgcgccctt gctcattaaa caagcgcgct acgtaatgcg
    10381 cgaaagggag cctgcggcaa tgcgcccgat gcttgaacgt accgttaaag gcgcgttgtt
    10441 aaccaacctg ttatttgtga ttgggatact cttaagtcag tgggccgttt aactgacaaa
    10501 tatcaattaa caattgatga ttttgccaac agtatactta gcgcgatata ctaaaaattc
    10561 tcgcagcaac tgaacgttaa gcctatgaaa tacgatactt ccgagctttg tgacatctat
    10621 caggaagatg tcaacgtcgt ggaaccgctg ttctctaatt ttggagggcg gtcgtcgttt
    10681 ggcggacaaa tcatcacggt aaaatgtttc gaggacaacg ggttgctgta cgatctgctc
    10741 gaacaaaatg gccgtggtcg ggttctgctg gtcgatggcg gcggttctgt ccgtcgtgca
    10801 ttagttgatg cggagctggc gcgtctggcc acgcaaaatg aatgggaagg gctggttatc
    10861 tatggcgcgg tgcgtcaggt ggacgatctg gaagagctgg atatcggcat tcaggcgatc
    10921 gccgccattc cggttggcgc cgcaggtgaa ggcattgggg aaagcgatgt gcgcgtcaat
    10981 ttcggcggcg tgacgttctt ctccggcgat catctctatg ccgacaacac cgggattatc
    11041 ctttccgaag acccgcttga tatcgagtga tcaaaaaagg cgccgtaagg cgcctttttt
    11101 atgcgttgtc gctgattgcc ggatgtcggc ttacgcctta tccggcccac cggtatccgc
    11161 attctaaatc ctctatagat ttcgcgtcag ggcaaggcgg caagaaagtg aatccccagg
    11221 agcataggcc actatgtgac tggggtgaac gcacgcagcc aacgccgcca taacgtgaaa
    11281 tatgacgagg attagacttc ttccatacga ccaagcagcg cctgtaaacg ttcctgccag
    11341 ccgctctgct gttccttcag aaaattattt tcacgctcga gttcttcacg ctgatgctgt
    11401 gcagactgca cttcctgcgt caggctgttg ttcttttctt tcagctcttc aatttccatc
    11461 tgtaacaggg tgatggtgtc aatcgcctgc tgtacttttg cttccagttt ctcaaacact
    11521 tctaaagaca tgatcttacc tctcctgaat tgcaaggcga cgcttcacgt aaacgcgcac
    11581 aatatatagt atcgattgta tgaagccccg ctctcgctgt ccagcgacat accgcgtaga
    11641 tcgcggtttg cagcaatttt catccatctc ctggtaacat tcattcaata acttaaaagt
    11701 gttaacatat tggttaatga aatgattcaa ttcactctct tctgctgtct caaaatgcgc
    11761 ctcatggcgc gataacgctc attttattga cgcagtacac acattttgat ttcgatattt
    11821 ctcgtttttg ctcgttagcg ataaattaac agtgtgccta cagggcatcg tggatgtcca
    11881 tgacctcctc gcataccaat aatcattaca tactcttcag gatccgatta tgagtcaaac
    11941 atcaacctta aaaggccagt gcattgctga attcctcggt accgggttgt tgattttttt
    12001 cggggtgggt tgtgtcgctg cgcttaaagt tgccggagct acttttggac agtgggaaat
    12061 cagcgtcatc tggggtctgg gagtagcgat ggctatctac ctgacggcag gtgtttctgg
    12121 cgcacacctg aacccggcag tgaccatcgc actctggcta tttgcctgtt tcgacaaacg
    12181 taaagttgtt ccttttatta tttctcaagt tgccggcgcc ttttgcgcag cggcgttagt
    12241 ttacgggctt tattacaatc tttttgtgga cttcgaacaa acccaccata tcgtccgtgg
    12301 cagcgttgaa agtctcgagc tcgcaggcat tttctcaact tacccgaatc ctcatatcaa
    12361 ttttgtgcag gccttcgcgg ttgaaatggt gattaccgct attctgatgg ggctgattct
    12421 ggcgctgacc gacgacggta acggcgtacc tcgcggtccg cttgcgccac tgctcattgg
    12481 tttactgatc gccgttatcg gtgcctctat ggggccgttg accgggtttg cgatgaatcc
    12541 ggcgcgtgac tttggcccca aaatgttcgc cgggcttgcc ggctggggtg aaattgcgtt
    12601 taccggcggt agagacattc cttacttcct ggtgccactg tttggcccca tcgtcggcgc
    12661 cattctgggc gcgtttgctt atcgcaaatt tattggccgt catttgccgt gcgatatctg
    12721 cgtcgtggaa gagaaggact ccaccgcggc cacacaacaa aatgcttcgc tgtaatctga
    12781 ttacgggaca aaattatgac tgaaaaatat atcgttgcgc tcgaccaggg taccaccagc
    12841 tcccgcgcgg tcgttatgga tcatgacgcg aatatcgtca gcgtatcaca gcgtgaattt
    12901 gagcaaattt atcctaagcc aggctgggta gaacacgacc cgatggaaat ttgggcgtct
    12961 caaagctcaa cgctggtaga agtgctggct aaggccgata tcagttccga tcagattgcc
    13021 gctatcggta tcaccaacca acgtgaaacc gcgatcgtct gggaacgtga aaccggcaaa
    13081 ccgatataca acgctattgt ctggcagtgc cgtcgtaccg ccaatatttg cgaacagctt
    13141 aaacgcgacg gcctggaaga ttacatccgc gacaataccg gtctggtcgt cgacccgtac
    13201 ttctctggca ctaaagtgaa atggatcctt gaccatgtgg aaggttcgcg cgaacgcgcg
    13261 aagcgtggcg agctgctgtt cggtacggtg gatacctggc ttatctggaa gatgacgcag
    13321 ggccgcgtcc acgttacgga ttacaccaac gcctcacgaa ccatgctgtt caacatccat
    13381 gatttggact gggacgataa aatgctggac gtgctggata tcccacgcgc gatgctgccc
    13441 caggtacgta aatcctccga agtctacggc cagaccaata ttggcggtaa aggcggtaca
    13501 cgtattccta tcgccgggat tgccggggat cagcaggccg cgctcttcgg ccaactgtgc
    13561 gtaaaggaag gaatggcaaa gaacacctac ggcaccggct gctttatgct gatgaacacc
    13621 ggcgagaaag cggtaaaatc ggaaaacggc ctgctgacca ccatcgcctg cggcccaagc
    13681 ggcgaagtca actatgcgct ggaaggtgcg gtgtttatgg cgggagcgtc cattcaatgg
    13741 ctgcgtgatg aaatgaagct catcagcgac gcattcgact ccgaatattt cgccacgaaa
    13801 gtgaaagata ccaacggtgt ctacgtggtt ccggccttca ccggtctggg cgcgccgtac
    13861 tgggatccgt atgcccgcgg cgccattttt ggcctgaccc gcggcgtgaa ctctaatcac
    13921 attatccgcg cgacgctcga atccatcgct taccagaccc gcgacgtact ggaagcgatg
    13981 caggccgact ccggtatccg cctgcacgct ctgcgtgtgg acggcggcgc agtggccaac
    14041 aacttcctga tgcagttcca gtcagatatt ctcggcacgc gggtggaacg cccggaagtg
    14101 cgcgaagtga ccgcgctggg cgccgcctat ctggctggcc tggccgtcgg ttactggcag
    14161 aacctggacg agctgcagga aaaagccgtc attgagcgag aattccgccc cggcattgaa
    14221 accaccgagc gtaactaccg ttacagcggc tggaagaaag cggttaaacg cgcaatggcg
    14281 tgggaagagc acgacaagta aggtcgccat ccggcaaaat ctttgtgcgg aggcaactcc
    14341 gcacacacat caattattcc ctccctcccc tgtgctacac tgcgcgccac tcctttttgc
    14401 tacgagtttg ttatgagacg agaacttgcc atcgaatttt cccgtgtgac cgaagcggcg
    14461 gcgctggctg gctacaaatg gctgggacgc ggcgataaaa ataccgcgga cggcgcggcg
    14521 gtcaacgcca tgcgtatcat gctcaaccag gtcaacattg acggcaccat cgtgattggc
    14581 gaaggcgaaa tcgacgaggc cccgatgctc tatatcggcg agaaagtcgg taccggccac
    14641 ggcgatgcgg tagatatcgc cgtcgatccg attgagggca cgcgcatgac agcgatgggt
    14701 caggcgaacg cgctggcggt actggcggtc ggcgataaag gctgcttcct gaatgcgccc
    14761 gatatgtata tggaaaaact gattgtcggt ccgggcgcca aaggggcgat cgatctcaat
    14821 ctgccgctgg cggataacct gcgcaacatc gcggatgcgc tgggtaaacc gcttggcgat
    14881 ctgaccgtga ccattctggc aaaaccgcgt catgacgagg ttatcgcaga gatggccaaa
    14941 ctgggcgtac gcgtgtttgc cattcctgac ggcgacgtcg cggcctcaat tctgacctgt
    15001 atgccggata gcgaagtcga cgtgctgtac gggattggcg gcgcgccaga aggcgtggta
    15061 tccgcagcgg tgatccgcgc gctggacggc gatatgcagg gacgtctgct ggcgcgccat
    15121 gacgtgaaag gcgacagcga agaaaaccgc cgcattggcg aacaggaact ggcgcgctgc
    15181 aaagcaatgg ggattgaagc gggcaaggcg ttatgcctgg gcgacatggc gcgtagcgat
    15241 aacgttattt tctctgcgac cggcatcacg aaaggcgatc tgctggaagg aattagccga
    15301 aaaggccata tcgccacgac ggaaacgctg ctgatccgcg gcaaatcacg caccatccgc
    15361 cgcattcagt ctatccacta tcttgatcgt aaagatcctg atgtgcaggc gcatatcctc
    15421 tagcgcattt gttagttaga gccttccagc ctcgcggggc tggaaatctt tctcctgacg
    15481 aacgaagata aggttagcga ttcagaacag gagaaaacca tggccgattg ggtaacaggt
    15541 aaagtcacta aggtgcaaaa ctggactgac gcactgttca gcctgaccgt tcacgccccc
    15601 attaatcctt ttactgcagg ccaatttacc aaactcggac tggagatcga tggcgagcgc
    15661 gttcagcgcg cgtattccta tgtgaatgcg cctgacaatc cgaatttaga gttttatctg
    15721 gtgacggttc cgcaaggaaa gctcagcccg cggctggcgg cgctaaaacc tggcgatgag
    15781 gtacaagtgg tcagcgacgc gtcgggtttc tttgtactgg atgaagtgcc tgactgcgag
    15841 acgctatgga tgctggcgac cggaaccgct attggcccgt atttgtctat tctgcaatat
    15901 ggccaggatg tcacgcgctt taaaaatctg gtcttagtcc acgccgcacg cttcgccgcc
    15961 gatttaagct atctgccgct aatgctggaa ctgcaacagc gttatgaagg caagctgcgc
    16021 atccaaacgg tggtcagccg ggagagcgtg ccaggctcgc ttaccgggcg cgtgcctgcg
    16081 ctcattgaaa acggcgagct ggaaaaagcc gttggattac cgatggataa agagaccagc
    16141 cacgtcatgc tgtgcgggaa cccgcagatg gtgcgcgata cgcagcaact gctgaaagag
    16201 acccgacaga tgactaaaca tctgcgccgc cgaccggggc atatgacggc tgaacattac
    16261 tggtgatgtt ttaccgaatg gcagctaggg cttatccggc ctgcaaatca tcaccaatct
    16321 gtaggcccgg taagcgtcag cgccaccggg caaattacgg tttaccgccc gtttacggtt
    16381 ctgccttaaa cttcacgtcc tgtgtcgctt tcccaaactt attttccccc tgaacaccga
    16441 caaacgcgcc cagatcgata agcatcatca ccaggatcag cgtcggaata aatcgcccga
    16501 cgacccactg ccacatcccc ggcaacatca cccagtttcc ggccagcagc atccacgcca
    16561 gaatcattag caacgcccac gcgccggaac gtccccggtc atgcagacgt ttgaccatga
    16621 cggcggcggt cggccacagc aggcacacca ggcaaaatgc cgccgtttgg atatcaagca
    16681 ggtttttccc cgccagcgaa aatagcgcca gcatcccggc aaaccagagg ccgatccaaa
    16741 tccagaaatc acggcgtccg atacgccctt taaatgagaa taaccattgc tgtatggtca
    16801 tgtaagttcc ttatattttg ccttccgcta cagtttaccc ttttgacaag cccgacagtt
    16861 atcgttttaa tcgtgagcag tcctaacgaa aggtaagatt gatgaagcca ggatgtactc
    16921 tgtttttact gttgttttct gctctcaccg ccagcataac ggcgcacgcg cagctctctt
    16981 catcgaccac gacagcgccc tatctgctgg cgggctcgcc aacctttgat ctttctatta
    17041 gccagtttcg tgagaacttt aaccgccaga atcccgatct gccgctcaat gaatttcgcg
    17101 ccattgagaa tagccgcgat aaggcgaatc tgacccgcgc cgccagtaag attaacgaaa
    17161 atctgtatgc ctccacggcg ctggagcgcg gtacgctcaa agtgaaaagt atgcagatta
    17221 cctggctgcc cattcagggg ccggaacaga aagcggcgaa agcgaaagcg ctggaatata
    17281 tggccgccat tattcgcact gtcgccccgt tactgacaaa agagcaaagc cagaaaaaac
    17341 tgcaaaagat gcttatcgcc ggtaaaggta aacactatta cgccgagacc gaaggcgcgg
    17401 tacgttatgt tgtcgcagat aacggcgaaa aggggctgac cttcgcggtt gaaccgatta
    17461 agctggcgtt atctgaaaat ctggaagggg cgaattgatg acaaaaagca aagcctttcc
    17521 ggggatgaat ctctatactg tttcacagac catgctgctc tgacgagcgg ccatcttcct
    17581 taattcgctg actaagcgtg gagaaatgaa atgcgacatc ctttagtgat gggtaactgg
    17641 aaactgaacg gcagccgcca catggtaaac gaactggtgg ctaacctgcg taaagaactg
    17701 acgggcgtag caggctgcga cgtggcaatc gctccgccgg aaatgtatat cgatctggcg
    17761 aaacgcgctg ctgccggcag ccacatcatg ctgggcgcgc agaacgttga tctgaatctg
    17821 tctggcgcat tcaccggtga aacttcggct gaaatgctga aggatatcgg cgcgcagtac
    17881 attattatcg gccactccga gcgtcgtact tatcacaaag aatctgacga gctgatcgcc
    17941 aaaaaattcg ccgtactgaa agaacaaggt ctgacgccgg tactgtgcat cggtgaaacc
    18001 gaagcggaaa acgaagcggg caaaacagaa gaagtgtgcg cacgccagat cgacacggta
    18061 ctgaaaacgc agggcgcggc agcctttgaa ggcgcggtta tcgcttacga acccgtatgg
    18121 gcgatcggta ccggtaaatc tgcaactcct gcgcaggctc aggcagttca caaattcatc
    18181 cgtgaccaca ttgctaaagc tgacgcgaaa atcgctgaac aggttattat ccagtacggc
    18241 ggttctgtta atgcgtccaa cgcagccgaa ctgttcgcgc agccggacat cgacggcgca
    18301 ctggtaggcg gcgcttctct gaaagctgac gccttcgccg tgatcgtgaa agcagcagaa
    18361 gctgctaaac aggcttaatt gccaatcaat gtctgatggc gctgcgctta tcaggcctac
    18421 cagccgagtg cttatgtagg cctgataagg taaagccgcc atccggcatt tatgctgtgg
    18481 agggtaagaa agtagtatcc ccggcaacct taaacatcgc cctccagctc cgcgtattct
    18541 caaccagccg atcatcacga aataacgcac taccagaaac aacacgatcg atgccctgtg
    18601 caatcagcga aggcaactga tcctgcgtta acgacccatc aataacgata attttacctt
    18661 cgcgtttatc accaagtaga cagagaagct gtgccacgcg ctcgtacaaa tcactggagc
    18721 gcattttact gccgtatcca gggttcactg ccagtagttg aataacctca acgtcgctca
    18781 gaatagggat aatgacatcc agaggcgttg ccgggcataa actaatcccc cggatcaccg
    18841 gcatttcacc gtcaataacg ggcacggtct gctgaccaag ccagcttagc gtatgatgca
    18901 gatgaatatc gccttcagcc tgaagcgtga tgcagtgtgc gcccgctttc acgcaggctt
    18961 gcgccgccgc ccattgatcc gctaccatca aatgaacatc tttgataaaa gtttgcggca
    19021 gttgcccaac tgcccatggc ccaacggtaa actgtgggca aaattgacca tccatcaaat
    19081 ccaaatgcaa cagcggctgg tttaacgctt ccaactgttg cagatagcga tgcaacgcaa
    19141 tccactgccc tgccagaata cccacactaa gcggatatga cgctaacaat gccacacatg
    19201 cttcgcgcgt taatccggca aactggctgt tcatgagcgc tccttaaggc atcaaaccca
    19261 taaaaacttt ttttgtccgc ggaccggtca tcaacggttc aagctgctcc acgcaagttt
    19321 tatagtgtgg cgttgtcttg tgaaaagcga cggcctgttc atcaacgtag gcttcataaa
    19381 tataaaatcg cgtaggcacc tgcggatcct gcagaacatc aaaacgcaag ttacccggct
    19441 ctttaattga gcccagatga ttctgccgaa aaacatcgat aaattgttca accttgtcat
    19501 catgaacgtt aatttcaacc agcgtaacgt gcatcattaa ccccctgatt attccaaata
    19561 aaataacagt catccccatc tcctcgcatc ggtaaaagat ggggaagcga tctcatttaa
    19621 cctttctcac tcaaaaacag ctcataagca cgctctgctg tttcgttatg atgaacgaca
    19681 gcatgtaccg ctttaatcat ggctaccgga tcttctgact ggaatatatt acgccccata
    19741 tctacgccag aagccccctg gtcaatcgcc tgatagcaca tttccaatgc ttcacgttca
    19801 ggcagttttt taccgccggc gatgacaatc ggcaccggac aacctgccgc aatacgctca
    19861 aaacctttat cgacataata cgttttgata atttgcgccc ccatttccgc agcgatacgc
    19921 gttgccagtg aaaaataacg ctggtcgcga gccatatctt tacccacccc ggtcactgcc
    19981 attattggca tcccgacgcg taacccggca tcaatcagtt gaataatatt tttaatcgac
    20041 tgatgttcat gttcactacc aatataaacc tgtgcggcag cagcacagct attcaaccgc
    20101 acagcgtcat ccatcgccac cgcaaccgcc tcattgctta attcagtgag aatagaattt
    20161 gccccggacg cgcgtaaaac gactggttta ttgattgccg gaggtaccac actgcgtaat
    20221 atgccgcgag tacacattaa gacatcagca tattcaaaga gcggcgcaat attgatatca
    20281 atacgctcaa gtccggttgt cggcccctgg aaatatccat ggtcaaaggc cagcatgacc
    20341 gttttcctgg tcctgggatt aaaaatcctc gccagtctgg actgcattcc ccaatccagc
    20401 gcgccacagc cttttaatga gaacaaagtg ttagtttgtg gtttatcggt gtgaaaatct
    20461 ttgccatctt taatatcatc taaatcagcc attctttact ccgtcgatac ataacagtta
    20521 tcagaaatca tatttgtcga tattgtcttt gttgaaaatg acacgctctg gcaataacac
    20581 aatgccgtta ccttttgcct catagtgata tccctgctca ctattaggtg aaacggtgac
    20641 tttgccgatg ccgggaatat ccagtgaatc accgacattc attggcatat ttttcagcaa
    20701 cgcgttggcg acatatacgg aaatttttcc ctgttggacg acatcccaca ggccaaactc
    20761 tttaacagtg ccgcgctgaa cataagggcg cattacattc ggcgtactaa aaccaacaat
    20821 cgcgagatta ttacgtttaa ggttctccgc cgcctgtgcc gcagcaggta aagcgttagc
    20881 gtcaggcgcg atgatggcat ccagatcggg atacgctttg atgatacctt ccgccgtctg
    20941 gagcgatttc gtggcatcgt tatagccaaa ctgggtagtg actatctccc accctggatg
    21001 ttcctggcta attttggctt tagcttcttt tacccactgg ttctggtcgg tcaccgttgg
    21061 gctggaatag aagaaagcga ctttcgcttt ctctttgtcc acctgatgag cggccatctc
    21121 taccagcatg ctgccgagct gttttggcgt cccttgattg atatagtaag aacggcactc
    21181 cggcttggta tcggaatccc aggttaatat tttcacgcct ctttgcattg cccgcttcaa
    21241 cgccgggcac aggccatcag gcgaaacggc agaaacgata atggcgtcat acccctgatt
    21301 gacaaagtta ttcaccagtt gaacctggcc tgagacgctg ggctctgtag ggccatcgta
    21361 agttacgtca atgcccagcg cttttcccgc ttcctgcgcg ccattgccgc cgctggtaaa
    21421 aaagcccacg ccaaccagtt tgggaataaa agcaatccgc tctgccgcct gcacggtcat
    21481 taccgcagat gccagaccaa acgcagtgag taaggcgatc attttaatgc tgtgtcttgc
    21541 catttttttc tccataaatt tcaaaaggaa atcatgcctg atgcgcattg cgacggcgtg
    21601 agtaccattc aaggatttgg tgacgatgca aactgacgga acgaccaacg acaacaacaa
    21661 tgagaagcgc accggacaat gcgctggaaa tttgattcgg cactccggcc atctgtagcc
    21721 cctgctgtaa aaatcccacc agcagcgccg ccaacgcgga ccccataatc gacccggagc
    21781 cgccataaat attggcgcct cccagcacaa ccgccgtaat ggtcggcatc aggaaagagg
    21841 cgcccagatc cgaacgtgcg gagccaaagt aagaaaccag taatacggcg gcgatcgcgg
    21901 aggcgcatcc ggtcatggca tacacggtat acaacgtgcg attcaccggg atcgcgctgt
    21961 actgcgcgac acgtgcgtcc catatgcgtg cgatgcatga gcagccagaa aaacagacag
    22021 cacacaagaa aaaaaataag cggcatagga ataccaagaa atgaaatatt ggcaaagtca
    22081 gtgaacgctg tgggaaatcc accaatacct tcataacccg tggcgccagc cataccagat
    22141 aacaataatg cgctaccacc aaataaatac atggttccca gggtaatcac caacgggttt
    22201 acgccggtat aaataataag tccggcattt atcagcccac atattgcgcc gagtagtagg
    22261 gtaataataa tcgctaaagg tagcggcata ccgagctgaa acagcacacc cagggtaatc
    22321 gcgcatagcc cgattgtaga accaaatgaa atatccatac caccgctgac aataaccatt
    22381 gttagcggca aagcgacaat accgatacaa ataaaatcgc tagtgctaaa aagtaagaca
    22441 ttaatatcta ataaacgtgg attaatcaga ccgaaagcca gaatttcaaa gatcaataag
    22501 gctgccagcg caatttccca gctatagcgt cgccatggat tcatcatgcc acctctttgt
    22561 ttttattctg ttgtgcgtgc gtttttgctt ccgcctgtag tggagtgggt ggtgatataa
    22621 aacgggcata tttctggcgg cgcagattgc gttgtaatgc gcaacgcagc cgcccatcga
    22681 ataccagtac gcccaacaat accaggccag caataaaatc gttccaccag gcggggatgc
    22741 gcagcagcac taacacacta tcgatttgcg taagaaaata agcgccgaga atagcgccga
    22801 tgaccgtgcc tgacccgcct aacaggctaa ttccccccaa tacgcaggcc gcgatggctt
    22861 tcatttccag ccccgtgccg gtttgattgg gaatgaagcc aatctgcgag gcaaacacga
    22921 ttccagccaa tgccgccata ccgccattaa gtgaaaatgc catgatgcgt accatctcgg
    22981 tacggacacc caattgccgg gcgccctgca ggttatcgcc ggtggcgtaa aaattgcggc
    23041 caaaggcggt tttcgccagg agccaggcca taagcagcgc taacaccagg gtaaaccagc
    23101 cgattgcgga aattcccaga aacaccggag cagagagttg ctttaagcct gcgggtaatc
    23161 cttcaatcca ttttccccct gtccatagca gcatgatccc acgatacaag cccagcgttc
    23221 ccagcgtggc gacaatggcg ggtatcttca accaggcaac cagtacgcca ttaaaaaatc
    23281 cggcgacaat tcctaatatt agtgtggcca ggcaggcgac cggcaggcta tagccggcgt
    23341 ttaacattac tcccagcaat accgcgcaca ttcctgtcgt cgagcccacc gatacatcaa
    23401 tattgcgggt gagcattacc atcgtcgcgc caatcgccaa cagcatcaaa atttgcgcgc
    23461 tactgaaaac cattgtcagc gtttgcacgc tcaaatactg gctatccagc gcgccaagaa
    23521 acacgaataa acagactatt gccagcagtg ccgtcgcttc ccggttattt tggatgaatt
    23581 tcaacatgtt gcctccgacg caccatgttc gccaaacgca acgtgcatga tggtatcaac
    23641 gttaatttcc tcgccgcata acgcaggccc ccccagttcc ccctggtgca tgacatatac
    23701 gcgatcggcc atctgctcta tctcttccag atcggaggaa ataaacagca ccgcgacatt
    23761 ttgttgcgcg atactgcgca acagctgata aatatcgctg cgggcggaga catcgacacc
    23821 gcgggtcggt tcatcgacaa tcagtaattg cggagaggcc tccaggcatt tggcaatcaa
    23881 tactttttgc tggttaccgc cggataaagt acgcgccgcc tgttcggcat tattgagttt
    23941 gatatttaac gcgcggtggt aacgttcaag ggtggcgtta tcccgctggg gctttatcca
    24001 aaatcctttt tggttgtggg tcagcgaaca gacattccat gccagggaag cgtcaagata
    24061 cagcccggat gactgccgat cttccggcaa atagaccagg ccgagctgca accgctgttg
    24121 ggttgtcagg gcgttaattt cttcaccatt gaacagcatc cgccccgcat tgaccggtct
    24181 aataccgtac agcgtttcag ccaattctgt gcgtcccgcg ccgaccaacc cggccaaacc
    24241 aaggatttcg cctgcccgca cctcaaggtt gatattcata aaaccttcgc ccgtcagtga
    24301 ctccagcgct aataccgtcg cgccgcgttc gttctgcggg cggctgccag gcaattccag
    24361 ccacaacttt tgactcgcgg aaagactgac gccctgcgtt gccggggtga tagcttgaat
    24421 aatctcgtcg gtagaaaggt catgcgtttt tctgaataat gcgattttac cgtcacgcat
    24481 cacgctaacg cagtgagcta actgtctaat ttctggcagc ttatgagaaa taaatacaat
    24541 tccgacaccc tttttcagca actcttgcag acgcgtaaat aaccggtcag tttcggctgg
    24601 cgttaacgac gccgtgggct catcaagaat taagattcgc gagtcgcgca tcaagccgcg
    24661 cataatttca acgatctggc ggtctgcaac atcaagcgta cccgcagcgc tcgccggatc
    24721 gagttggcat cccatcgcct ttaatagctg ctgcattttt tccgtggagg cctgacgtcc
    24781 ctgcaagcca aacaagatat tttcccgcac agataaactc ggaaataaca gaggctcctg
    24841 gggaaccagg taaatgccat actggtgcgc cttcagaggc gttaaatgac tgcaacgcac
    24901 accagcaata tcgatagtcc ctccatctgg cgggactata ccggcaataa tcttcattaa
    24961 tgttgattta cccgcaccat tgccgccaag caatgcgtgc acctctcccg catgcagagt
    25021 aaagtcaatt ccctttagta cttcgacgcc ggaataactt ttataaatgt tctgcacaca
    25081 aatcagaggg gatgcagtat tgtgactgat ttgcatgttg cctccgctcc ctcaatgttg
    25141 actgacggga ctgaacaaat gttttttgaa aaagaaattg ttcaaaacgg tagtagttat
    25201 ttggtcaaaa aactctcatc cagatcacgt tttctgaata aatgaatttt tagatgataa
    25261 atgttcagat ttggcgcgtt tttgtggcgt taatcacggt tatttcggag tgataactga
    25321 acaattgtgt taatgattta gaaatgttca aagtaaagcc aggttatgac aatgagcgat
    25381 aatacgttgg tatctgatta tggaatgtgc gaagaagagc aggtggcgcg tattgcctgg
    25441 ttctactatc acgatggatt gacgcagagt gaaatcagcg agcgtctggg gctaacccgg
    25501 ctaaaggttt ctcgtctgct ggagaaaggg catcagtccg gtattattcg cgtacaaatc
    25561 aactcccgtt tcgaagggtg tcttgagtat gaaaatgcct tgcgtaacca cttcgcattg
    25621 cagaatatcc gcgtgctgcc ggcattaccc gatgccgata ttggtctgcg cttaggaatc
    25681 ggcgccgccc atatgttgat ggagtcactg cggccacagc aactgctggc cgtcggcttt
    25741 ggcgaagcca cgatgaccac attaaaacgc ctcagcggat ttatctcggc gcaacaaatc
    25801 cgactggtca cgttatccgg cggcgtgggg ccgtatatga ccggaatagg ccagcttgat
    25861 gccgcttgta gcgtaagtat tatgcccgcg ccgctgcgcg catcatcgca ggaaattgcc
    25921 tgcacgctgc gcaatgaaaa tagcgtgcgg gatgtgatgc tcacagcgca agctgccgat
    25981 gccgccatcg tggggattgg ggcaattaac cagaaagatc aagccagtat cttaaaatcc
    26041 ggctatatca ctcagggtga acaactcatg attggccgca aaggcgcagt aggcgatatt
    26101 ctgggctatt tttttgatgc tcatggcgaa attattccag acatcaaaat ccataacgaa
    26161 ttaattggcc tgaagttaaa ttcactttcc acgatcccaa ctgtgattgg cgtcgccggc
    26221 ggcgaacaaa aagcagaagc tattattgcc gctatgcgcg gtaactatat caatgcgctg
    26281 gttaccgatc agaaaaccgc agggaaaata attcaactta ttgaaaaata aaaaataaaa
    26341 taacacttac ctcaattcaa taaacaataa ctgacaggat tttatgtaac gatgtaaaaa
    26401 tagccgaggg taaaaaaatg gctcgactct gtacccatac tgaatcagga cattacctga
    26461 tggctcttga cgccggtacc ggtagcgtca gagcagtaat ttttgatcta caaggaaagc
    26521 aaatagctgt cggtcaagcg gaatggcagc atctggccgt gccggatgtg cctggttcga
    26581 tggagtttga tcttgccaaa aactggcaac tggcttgcca gtgtatccgt caggcactac
    26641 agaaagccgc catccctgca acggctatcg ctgccgtatc ggcctgttcg atgcgtgaag
    26701 gcattgttat ttatgacagt aacggcgaac ccatttgggc ctgcgctaat gttgacgccc
    26761 gcgcggcgca cgaagtcagt gaattaaaag agctgcacga taacaccttt gaggaggaag
    26821 tttatcgttg ctccgggcaa acgctggcgc tcagcgctat tccgcgtctg ctctggcttg
    26881 cccaccatcg tccggatatt tatcatcgcg cgtcaaccgt cactatgatc agcgactgga
    26941 tggcctttat gctcagcggc gaactggcgg tcgatccctc caacgcaggc acgacggggt
    27001 tattggatct ggtgacccgc aactggaaac gtagtctgtt acagatggcg ggcctgcgtt
    27061 ctgacattct ctcgccggta aaagaaaccg ggacactgct cggtcacatt tcacagaaag
    27121 cggctgaaca gtgcgacctg caagcgggta cgccggtcat cgttggcggc ggcgatgtgc
    27181 agttaggctg tctggggctg ggcgtcgtac gcccggcgca aacggccgtg ctgggcggaa
    27241 ccttctggca acaggtcgtc aatcttcccg cgccggtcac cgacccaaac atgaacgttc
    27301 gcatcaatcc tcatgtgatc cccggtatgg tacaaaccga gtctattagc ttttttactg
    27361 ggttaacgat gcgttggttc cgcgacgcct tttgcgccga ggaaaaacta atcgctgaaa
    27421 ggttaggtat tgatgcgtat tccctgctgg aagatatggc cagccgggtg cctcccggcg
    27481 cgcacggtgt gatgcccatc ttctctgacg ttatgcgttt taaacgctgg taccatgccg
    27541 cgccgtcgtt tatcaatctg tctatcgatc ctgaaaaatg taataaagcg accctatttc
    27601 gcgcgctgga agagaatgcc gccattgttt ccgcctgcaa tttacagcaa attgccgcgt
    27661 tttccggcgt acaggccgac tcgctggttt ttgccggcgg aggatctaaa ggcaaattat
    27721 ggagccaaat ccttgccgac gttacgggac tcaccgttca cgtacctgtc gtcaaagaag
    27781 ctaccgcgct agggtgcgct attgccgcag gcgttggcgt gggtatctgg ccatcgctgg
    27841 cggaaacggg agaaaagcta gtgcgctggg atcgggagca taaacctaat cctgaaaatt
    27901 tcgctgtcta tcagcaggcc agagaaaaat ggcaggccgt ttatcaggat caacgcgcgc
    27961 tggtcgatgg tggcttaacg acatccctct ggaaagcgcc aggcctgtaa caggagaata
    28021 agcatgcaaa aaacgaatga gaagaatcat gaataccgct ttagtgataa tggccctaaa
    28081 tacttaatcc gtgggccggg ctgcgatatg ggcgtcgtca tactacaacc agggcagtca
    28141 ttccctaacc atcgccataa taccgcttgt gaggtttttt ataccctaag cggtgaagtg
    28201 tgcctgtatc tggaaggaac acctcatatc ctgcaaactg gagatgtttt acagtgcgaa
    28261 ccaggggagg cacattatct cattaataac ggcgataagc cctagaaagg cgtgtttatt
    28321 aaatcgccgc atctggaaaa tgacagccac cccgcagatc caccggcctg gtaacgccca
    28381 cgccatcgcc agattttgcc ggatagcgcc acgagagcct tgtccggcct ccaaacggca
    28441 ttcgttaatg caatatcaag ctgtcatttg atgacctgtt ggttcaagat atcacactga
    28501 tgatcctgaa tttcctcggc agaagcgcga ttgaaggtca gtaaattacg ctcggtcgcc
    28561 agcaggacaa aagagccatc gctttggcgt accaccgcca gcgcgctaca tcactgcatc
    28621 cccgcccgcg caggaacttt ccctggtccc atcgccacca cagcagcaaa aaatagcagt
    28681 gcggtcataa actccggcag tagcgaagtc gcccacagaa ggatagtaat gccaacgatg
    28741 atggaaggga ggatcagagg ataggacaac cagagcgaca tacctgtctc ctgacgattt
    28801 tttcagcaag aatacgacgg acagtcaggc aggtaaacgc cagatatagt ggggttatcg
    28861 caggattaag tggacagatc agtgataatg aatttcacca aagtattcag acagcacgta
    28921 atagcggcaa tactcaaaag ggctgtcctt cccggcctga aacgtctgtc tggcgacgga
    28981 taacagcggt ttattggggg cgatttgcaa tttttcgcac aggtcagcgg aaggtaaaat
    29041 cgcctcaact ttttctatcg ccgagtcgct tgtgacgttt aataacgaat aaagcgacgt
    29101 atgctccagc gcctgcggtg tgagttgcag atcgggaaag aagctaagat cgagatagat
    29161 cttttcatgg ttaaacggac ggttattcag gcaacgaata cgcgaaatat agagatagtg
    29221 atgctgtgcg ggcaggctca agccgtctgc ctgagcgtcg cgcgcgcggc gcggcgcgat
    29281 ttccagaata cggttctcaa tcgccacgct ggcgtcctgg agatcgcggg taataccgcg
    29341 aaacgtgtgc ccgtagctca cgccttccgg caccgagcac accaccgaac cactcccgcg
    29401 ctgcgacgaa ataatgcccg cattgattaa ttcgctccag gcctgtttaa ccacaatcag
    29461 cgagacgttg taggatctgg caatctcttt ttgcgtcggt agttggctac ccaaaggcaa
    29521 agacccgttc tggatctgct gacagatgat aaaaaatagt tgcttataaa gcggagtaaa
    29581 gctcgtttta tcaacctgca agctgcgcac ctcacgtctt cgccagcagg ggacgtttta
    29641 ccgtccccgg cagggtgaag tcgctaccct gcgatttgcc tggccagttc tgccaaatcg
    29701 aaatgattca tacgatccaa agtcgttaaa taatcggcgg gaaaagcctc cacgccatgg
    29761 aatgcgccgg aaatcgcccc gaccatggtg gcgacagtat cagtatcatt gccgatatta
    29821 acgccggaga taatagcatc tacggcagaa ttcggacaac acgcgaacag gccaaaggcc
    29881 gcgggcaccg cttcactcac gtgcagcccg gagccaataa tatcggcaat atccactatc
    29941 gccgtttccc aatggcgatg acgtttaccg atatctacgg ccagctcaat gcgtcgggca
    30001 acggaaggac ctgccaccat catcgcccct tgctcctgcg ccagcagata gcccctttgc
    30061 gcaccgtaaa taccggcggc aataatgctg tctgcattgg tctgcgctct taacgcctcg
    30121 ctggttgccg ccgccatcgc cgctgcgccg gacatcgcca gcacgttatt atgcgtaaaa
    30181 cggcaaatct gcagcgcgca gtcaatcgcc gcgtcaatat cacccgggtg cagcaccgcc
    30241 gctggccaaa tcttcatggc ggcgccgttc gttgcctccg cattaccctt attaatgatc
    30301 tgtaccgact gtttctcgcc ttccagctca ccctgtaaag aggcgcggtt atcattgaat
    30361 attgccttca ttgccgcacg cgtcgtcggg ccggtaaagt tggcgtagta cgggtaatcc
    30421 agccactgct ggaaagcttc gcgcatcgct tcgtcgctga cttcacgctg atggcgcagc
    30481 agcgcatcca tgatgtactt cgcctgaata aaatcatccg tgcacatccc cgcttcattg
    30541 cagcgcccaa acgtgtccgc aggcggtttt tgaaaggtcg tcacccagcc gccaaaatag
    30601 tcttttattt gctgctgggt gcgtacttcc gtcgcggctc ccatcgcgtc cgcggcggcg
    30661 gcgcccacca ggcatcccag tattttgttt tgatcaacgt gcatgatgac tccttatttc
    30721 acggtcatgg cttgtgccag cgaatggctg gacagaaaag tgtttagctg gtcgggaaac
    30781 ggcagagcgg tcattgcgcc ttttgccgtc accgccatag cgccgcaggc attggcattg
    30841 ctgatggctt ccgccagcag ggcatgatcc cagcaatttg cgcgggaaag ggtgaacagc
    30901 aggccgccga caaaagcatc gcctgctccg gtggtatcga cgacatcgac gcgtggtgcg
    30961 ggaaaatgga actccccctc ggcggtaatc aacagcgcgc catcggcccc cagcgaaatg
    31021 atcgtggtgt cacagcctag atcgcgcagg taataacgcg catcctgcca gtgactggcc
    31081 ccgctgagct ggcacagctc atctgccgag actttgcaga tagaagccaa cgcggcggac
    31141 cgggcgatca gttcagggat ttcatcggta ttgcgccaca tcttgctgcg taagttgacg
    31201 tcgaataaca cgtagccacc ggcttctcgc atgcgtctcg ccccttccag acatgcttcg
    31261 cgagcgggac tgtcggtgag gccaattgag ctgaagtaaa accattcgtg ctgcctgaac
    31321 ggcggcaaat cctgcggcga aacgtaggta tcagcccccg gatgcaccag ataggtaaag
    31381 ctgcgttccc cgtcagccgt caggttgacg atcagcaccg cgctggtcag ggccgcatcc
    31441 agccgcagcg aagagacatc cacgccgtta tcctgaaaaa cctggcgcag gaaacgaccg
    31501 gcgtcatcat caccaagaca accgataaaa ccgcactccc cgcccagcct ggcaacgcat
    31561 acccccacgt tcgccgacgc tccgccgggg catttcagat agctgttctg tttttccggc
    31621 accagatcaa cggaggcatc gccgataacc caaaccttat tcatggcctt catttgcgcc
    31681 tccttatgcc tgtttctgcg ccagggcgag ctgaatatca cgataatatt cattattaat
    31741 cagatacttt ttcatcagca gcccaaccgc aaggtggaac agagccggaa tgagcgtcat
    31801 catcagcgca ataccggtga gcgaacgcgc gctctgttca acatcggcct gatagccaaa
    31861 gtggctcagc aggaatccga gtatcccgcc cgcgatcccc atcccaaact tctggaagaa
    31921 gaggatgccg ccaaacgcca acccggaaac gcgcagaccg gttttctttt ctccgtaatc
    31981 caccgcttcg gcgatagagg accagaacac cggcatttac atatcgcaga agaaattaat
    32041 aagaaaatag aacgcaaacg ccaggataag attttcacgc ccgacagaga aatacatcag
    32101 cgcgctcagg ataaaggtaa taatctgggt gtagcggaac atcttaattt tgtcccagaa
    32161 cttggttatc caggtggtgg caatcatcgc taaaatagag gcaacgacgc cggtagtcag
    32221 gaagggtgaa atcaggctat ctccgccgtt cagataatac ttggcgtaat aagcggcaac
    32281 ggaaccgcga ataacataac cgcacatcag cagcagaata acaacgccga gaataatcca
    32341 ctgatcgtta cgtaacagat atttaaactg tttccccacc gatagcgagg taatctccgg
    32401 ctcgctgcgt tcacgcgtgg tgagaaaaca gaagataaac agcagcgcac ccattgcccc
    32461 cattaagccc atcgaaaact gatagcccaa agccttatta ccctgcccca gccagacggc
    32521 aagcatcggt acaacgatag tcaccagaaa agcggcaatc ttggtcatca caaagcgata
    32581 accgttggcg cttaaccgct caacggggtc gctggtaatg acgccaatca tcgaaatata
    32641 aggaatggtg atcgcggtat agaccagggt cataagaata taggtgccat aggcccacgc
    32701 tagcttggcc atataagcca tgtcaggcgt aataaacatc aaatacacgg cgaaaccaaa
    32761 aggaatggca aaccacagca gccacgggcg gtaacgtccc cagcgcgtgt tcagtttatc
    32821 ggtcagaacc cccatggccg gatcgataat ggcatcaatc atccgcacaa ccacaaacag
    32881 tacgccaaca tcagcggcgc tcaggccgta gatatcggta tagaaatagg cgaggagcag
    32941 ctgcatggcg ataatcacaa cgtttatcgc catatctccc gcgccgaagc cgattttttc
    33001 cacgatagaa agtttcatgt tgatattcct ttacgcttaa cagcgcaaat ctggtgaaca
    33061 attaatgatg tcactacatg aaataaaaac gtttttatat ataagccatc catcagacaa
    33121 tctatggagg ctatgaagag agtgtaacga accaccaaaa gatataaagg tataccttta
    33181 tatcttttgg ttggtttcac atatttttat agacacgatc ttaccccagt tttaaaccgg
    33241 gataagaatc aataagataa tgagcagggg ggtgtaacga aaatcagcgg gaagacaaaa
    33301 tggcgcaact atggtcctga atctcttccg ccgatgcgcg attaagcgtc agcaggttac
    33361 gctcggtcgc cagcagaaca aaagagtcgt cgctttggcg taccaccgcc agcgcatagc
    33421 gtcccatatg atcgcgcgct tccggcacct cttccgccag catcataaac ggactacgct
    33481 gcgccagttc gctctcggtt acccggcgcg ccaggtattc atgccccatc agatcgcccg
    33541 gcagcggaag ccagcgagtg ctgatgcgcg tgagatcgtt atccagttgt tcccgaacgt
    33601 caggacggat gcaagaaata tggatatgca aatggtcctg tgaacgacca agccgcgaat
    33661 taatcgccag cgagaccgcg ctatccggaa tatcatgccc gtatttttta ctcatatagc
    33721 cgcgagcctg ccaggccagc cagaaaaagt tgggcgtagc gggttccagc aatagcgggc
    33781 tttctgtacc gttgatacgg taggtgggca tcaataaata ttgcaacgga ccgtgacgat
    33841 ctttaaagat gacatagccg gcgcgaggtt tgacttccgc gcaaggcgct gggttttgat
    33901 gctgtaactg atcgggcagg caccgttcaa gcacgatttc ccgtaatgca tcaggattgc
    33961 cggaaaattt ccagtaaccg acgcccgccg cggcgacaat cactatcacc gccagtaaaa
    34021 agtagcctgt ttttttcatg atatgcgttc cctgtgaccc atagacgggg aagagtaacg
    34081 caaaattgtg gcaaagaaaa aacccggtaa cataatacgt taccgggttt ataaacggtt
    34141 tagcgtttgc tgatttggtc gaacgtaccg ccattagcaa agtgatcttt ttgcgccttc
    34201 acccagccgc caaacacctc gtcaatggtg aatagcttca gcttcggaaa cgcatcgtcg
    34261 tattttttcg ccacgtcagc atcgcgcgga cggtagaagt ttttcgctgc tatctcctgc
    34321 ccttccggcg aatagagata cttgagatac gcctccgcca ccgcattcgt ccctttcttc
    34381 tcaacgactt tatccaccac ggacacggtc ggctctgcga ggatagattc actcggggtc
    34441 actatctcga atttatcttt acccagttcg ttcgtcgcca gcagcgcttc gttttcccag
    34501 gcgatcagca catcaccgat accgcgttca acgaaagtat tggttgagcc acgcgcaccg
    34561 gagtccagca cttcaacgtt tttaaacagg gctttgacaa agtcctgggc tttggcctga
    34621 tcgttattgt tgtggtgcag ggcgtagccc catgccgcca gatagttcca gcgtgcgccg
    34681 ccggagcttt tcgggtttgg cgtaatcacc gacacaccgg gtttaatcag atcgttccag
    34741 tcatgaattt gttttggatt gcctttgcgg accaggaaaa caatggtgga ggtgtaaggt
    34801 gctgagttat ccggcagacg cttgatccag tttttatcga tacgaccacg ttcagcaata
    34861 gcgtccacat cgtaagccag cgccagcgtc acgacatcgg cttcaatgcc gttaatgacg
    34921 gaagtcgcct gtttacctga accgccgtgc gactggcgga tcacgacgtt gtcgccggtt
    34981 tcctgcttcc agtgcgcgct aaacgctttg ttgtactgct cgtacagctc acgcgttgga
    35041 tcgtacgata cgttaagtaa ctgaatatcc tttgccagaa tgctggttga cgccagcaat
    35101 aatgtgaacc ccacgcccca ctttttcatc gcccgactcg cttatgttgt gttgtgatga
    35161 gcaaagcgtg ccagaaagag atccaaacat taaagaataa aaaaagattg gctataactt
    35221 cgaggaataa atctgaggga ttgccggatg gcggctagcg cctaatccgg cctacacgtt
    35281 tctgcaacct gtaggcctga taagcgtagc gccatcaggc gcgcaaaaac aatcagtaca
    35341 gttttttcgc gcactccatc cagtcgcttt tgaacggacg cttcatgttt tcaatcgcat
    35401 cgatgatgtc atgatgaaca agctgctcgt tctggatacc gacacaacga ccgccatggc
    35461 cttccagcag caggtcaata gcatacgcgc ccatacggga agccagaatg cgatcgtaag
    35521 gtaccgggga accaccgcgc tgaatgtggc cgagcaccgt cgcacgcgtt tcacggcccg
    35581 tttctttttc aataaagtgc gccagttcgt caacatcgca catatgctca gtaatagcga
    35641 cgatagcgtg ttttttccct ttcgcgatcc cggctttgat ttcggccacc agatcttcgc
    35701 gattaaattc aacttccggc accacgataa actcacagcc gccagcaata gccgccgcca
    35761 acgtcaggtc gccgcaataa cggcccatca cctcaacgat agagatacgc tggtgagaag
    35821 aggaggtgtc acgcagacgg tcaatcgctt ccactacagt gccgagagca gtgaagtagc
    35881 cgatagtgta gtcggtgcct ttgatgtcgt tatcgatagt gcctggcaga ccgatgcacg
    35941 ggaagcccat ttcagtcaga cgttttgcac ccatataaga accgtcgccg ccaataacta
    36001 ccagcgcatc gataccgcgt tttttcaggt tttcgatcgc gacagcgcga atattttcgt
    36061 cacggaattc cgggaaacgg gcggaaccga ggaaagtacc gccacggttg atcatgtcag
    36121 atacgctgta acggtcaagc tgaaccatac gatcttcata caggcccaga tagccgtcat
    36181 aaatgcccat gacttccagc ccttccgtca acgctgcgcg cacaacaccg cggattgccg
    36241 cgttcatgcc cggcgcatca ccgccgcttg tcaacacacc gattttctta atcatgacta
    36301 cctctgaact ttggaatgca aaatgaaatc tattgccgga agccgatttc gcacttcgaa
    36361 acgatccaac gaatatacag atagtataac aatcccttcc tgctgaattg attcaggtca
    36421 ggccaaatgg cggtaattta tacacaaaat gctggcctgg ctcacttttt aacaatcaat
    36481 tatacaagct cgaacttcct gccttccctg gggacgactg aacagggatc ctgatgaata
    36541 atgacatctg aacccggaaa acgccgcaaa atcgcctgct ctacctggtc agccacaaaa
    36601 tgcgcctgaa cgagcggcag attatcttcc atttccaaat gaatctgaat aaagcgagtc
    36661 ggccctgact gccgcgtgcg gagatcgtgc gcgccgctga ctcccggcca tgacgtcacg
    36721 atatcaataa tttcctgtcg ttccgcatcg ggcagcgcgc gatccaataa tgactgcacc
    36781 gcctcatacc ccatacgtaa cgcgctatac aaaatataga tgccgatacc taacgcaaac
    36841 agggcatccg cacgatgcca accgtaccag gataacccca gcgcgataag aatcgctccg
    36901 ttcatcataa catcagactg ataatgaagc atatccgccc gtaccgcctg actttgggtc
    36961 ttgcgtacca cccagcgctg aaacgtgacc agtataatag tgcatatcag agcgatgacg
    37021 gtaacgccaa tccccacgcc ggggtcgttc attggcgtcg gcttaatcag attctggata
    37081 ctggtcaaaa acaacgccga accggaaata aacatacttt gcgccagcgc cgccagcgac
    37141 tccgctttac cgtgaccaaa cgtatgttca tcatctgcgg gttgcagcga ataacgcacg
    37201 accaacaaat tcgtcaatga cgcggcaata tccaccagcg agtccaccaa cgccgccaga
    37261 atactcaccg atcccgtata ccaccacgca aaaattttga tcaaaagtaa cgctgatgcc
    37321 atcgccgttg ccgcgatagc cgcccggcta accagccgtc cataggtttg attcataaat
    37381 actcccgcta tcttctgccg gtagtataac ggatggttta aaacagtaag ctaataacag
    37441 aatgacaaac tggagataaa aaaaaccccc acatcatgtg ggggaagaca gggatggtgt
    37501 ctatggcaag gaaaacaggg ttgttactgg gaacgtgagt tgctactact caataatttc
    37561 aacgatgaac ttttttgcca ttgcgccacg tcgcgcagtt gctccattcg ttgctgatgc
    37621 ttttcattca aaaccgcttg ctgctccggc gttaacaggc gatacatctg gttacgcacg
    37681 cgggccattt cgacctggcg ggcaacctgc tcttgcgcca ttttttctgc ctgagcgcgc
    37741 acaacgcttt catcaaattt ttctgcggtg acaagccgat gcattgtctc catttcgcta
    37801 acattaacag gaggctgttc gtgccttgcc tgctgcataa gatctcgcat ctgctgacgc
    37861 tgatgttcgg ttaaacttat gccgtcaaac atatgatttt gcgcgctacg ctgcgtggcc
    37921 ccgtcaccgg ggtgccagtt atcgcttgta acaacttcag ctgcgtggct taaaaaactg
    37981 aatgccagcg ttgaggccat aacagcagcg gtaactttgc gcatcgcttg ctcccaaaat
    38041 cttttctgtc gcgattcaac gagagacagt ttacgattcg ggctgcaaac atgcgtcagg
    38101 gggtgtaaaa caacgtaaag tcatggatta gcgacgcctg atgacgtaat ttctgcctcg
    38161 gaggtacgta aacaatgaat aaaatcctgt tagttgatga tgaccgagag ctgacttccc
    38221 tgttaaaaga gctcctcgaa atggaaggtt ttaatgtcct ggtggcccac gacggcgagc
    38281 aggcgcttga gcttttggat gacagcatcg atttactttt gcttgacgtc atgatgccga
    38341 agaaaaacgg tatcgatacg ttgaaagcgc ttcgccagac acaccagacg cctgtcatta
    38401 tgctgaccgc gcgcggcaac gagctggatc gcgttctcgg ccttgagctg ggcgcggacg
    38461 actatttgcc caaaccgttt aacgaccgcg agctggtagc gcgcatcagg gctattttgc
    38521 gccgttccca ctggagcgag cagcagcaga gcagcgacaa cggctcgccg acgctggaag
    38581 ttgatgcgct aagccttaat ccgggtcgcc aggaagccag tttcgatggc caaacgctgg
    38641 agctgaccgg tacggaattc accctgctct atttactggc gcaacacctc ggccaggtgg
    38701 tttcccgtga acatttaagt caggaagtgc tgggtaagcg cctgacgccg ttcgatcgcg
    38761 ccattgatat gcatatttct aacctgcgcc gcaaactgcc ggaacgcaaa gacggtcacc
    38821 cgtggtttaa aacattgcgt ggtcgcggct atctgatggt ttccgcttca tgataggaag
    38881 tttaaccgcg cgcatcttcg ccatcttctg gttgacgctg gcgctggtgc taatgctggt
    38941 actgatgttg cccaagctcg attcacgcca gatgaccgag ctgctggaca gcgaacagcg
    39001 ccagggattg atgatagagc aacatgtaga agctgaactt gcgaacgatc cgcccaacga
    39061 cctgatgtgg tggcgtcgcc tgttccgcgc gatcgataag tgggcgccgc ctggacagcg
    39121 gttattactg gtgacctctg aaggacgcgt gatcggtgct gaacgcagcg aaatgcagat
    39181 cattcgtaac ttcattggtc aggcggataa cgccgatcat ccgcagaaga aaaaatatgg
    39241 ccgcgtagag atggtggggc cgttctccgt tcgcgacgga gaggataatt accagcttta
    39301 cctgattcga ccggccagca gttcgcaatc cgattttatt aatctgctgt ttgaccgccc
    39361 gcttctgttg ctcattgtca cgatgctggt cagttcgccg ctcttgctat ggctggcatg
    39421 gagtctggcg aaaccggcgc gtaagttgaa aaacgcggct gatgaagtgg cgcaaggcaa
    39481 cctgcgtcag catccggagc tggaggcggg tccgcaggag ttcctcgccg ctggcgccag
    39541 ttttaaccag atggtgacgg cgctggaacg gatgatgacc tcgcagcagc gtttgctgtc
    39601 agacatctcc catgagctgc gaacgcccct tacgcgcctg caactgggta ccgcgctgct
    39661 gcgtcgtcgt ggcggcgaaa gcaaagagct ggagcgtatt gaaaccgaag cgcagcgtct
    39721 ggacagcatg atcaatgacc tgctggtgat gtcgcgtaac caacagaaaa atgcgctggt
    39781 cagcgaaacg atgaaagcca atcagctatg gggcgaagtg ctggataacg ccgcctttga
    39841 agccgaacag atgggcaagt cgttaacggt aaattatccg ccggggccgt ggccgctcta
    39901 tggcaaccca aacgcactgg aaagcgcgct ggaaaatatt gttcgtaatg cgctgcgcta
    39961 ttcacatacg aagattgaag tcggcttctc ggtggataaa gacggtatta cgatcacggt
    40021 cgatgacgac ggaccgggcg taagccctga agaccgcgag cagatcttcc gtccgttcta
    40081 tcgcactgat gaggcgcgcg accgcgagtc tggcggcacc gggctggggc tggcgattgt
    40141 cgaaagcgcc atgcagcagc accgcggctg ggtgaaggct gacgatagcc cgctgggtgg
    40201 gttgcggctc acgctgtggc taccgctgta caagcgaacc taaaaaccat cggcctgcga
    40261 atgcaggccg attttttatc tcgccgtcga gatttaccgg gaaatgtctg gcgctaaaat
    40321 ccactcggcg ctgtcgttcc acacgtccat ccgggtaatt ttgccatcgc gcacttcgaa
    40381 acgatcgata aagcggttat cggcaaacgg gcgaccgtcg ggccattcgc catacaacgt
    40441 accgttggaa taaatcacaa cgtaatcatc atgctgcacc gcatcaaact tgcccagcgc
    40501 cttcttcacc cacttgtagc gagcgccgtt aaactgcgcg atatctgccg cgcccgccat
    40561 cgcccggcct ccggtgaagg taattttcac ctccgggtgc atatacgttg cggcgcgttc
    40621 agcatcggga atcatcgagg ccaccaaaaa ttcttttacg atcgccaccg cattttcagc
    40681 ttcagtcata atccttcctt tcattttggc ggagttttat ccccccacag tcgtctggcg
    40741 ctatcttcaa ttttgccgct caaacgacgc ttctgcatgg tgcggctcca gctcgccgac
    40801 agcccggcgg cgctcagcag ccggtgatat tgttcgtcat caaacggcat agaccaggcg
    40861 ataacacccg cttcatgaac cgagacatcg ctcagacgcg acgccagttc cagcggcgca
    40921 tcgctggaga ccttacctgg cgcaatgacc cgatacaacc agccagtttt tccgctgttc
    40981 tgcataagga gggccatgtc gctgatggca aagtggaaat taagtttaaa gcatggagag
    41041 cgcggctgag tgacctggat caacgcctcg ccccagcggt agatgtcgcc aataaacacg
    41101 ttgtgttcgg tcattccgtc cgtcgacaga ttctcgccaa acgccggggc gcaaaacagc
    41161 gtcgcctgct cggggaactg gcgaatccaa tcagcatagt gttcgcgggg gtaatgacat
    41221 agcgcgcggt cggggccgcc gtggattttc ttttcggcct gctgatcgcc tgccagaccc
    41281 agctcggtca gcatgagttc gccgtcgatt tgcaccttgg cgatagcgct cgggcggctg
    41341 ccgtcatagt cacgaatttt gccaataaac acgtcaaccg gataatgcat ctgctgctcc
    41401 ttacgcggat acaaaaaaag cgagtcatca gactcgcttc tacagacgtg caatgcaaat
    41461 tattttttag cggcgaaacg cgctgctgct tcgtcccagt tcaccacgtt ccagaactct
    41521 ttgatgtagt ccgggcggcg gttctggaat ttcagatagt aagcgtgttc ccacacgtcc
    41581 agacccagga tcgggaagcc ggaagcgccg gaaatggctt cacccatcag cggggaatcc
    41641 tggtttgcgg tagaaaccac agccagtttg tcgcctttca gcaccagcca cgcccagccg
    41701 gagccgaaac gggttgctgc tgctttttcg aattcagctt tgaagttgtc aacggaaccg
    41761 aagtcacgct cgatagccgc tttcagatcg ccctgcagag tggtgccttt tttcagccct
    41821 ttccagaaca ggctgtggtt agcgtggccg cccgcgttgt tacgcagcac ggtttttttg
    41881 tccgctggca cctggtccag tttagtaatc agttcttcaa ccggcaggtc agcaaactca
    41941 ggcagatttt ccagcgccgc gttagcgttg ttgacatagg tttgatggtg tttggtgtgg
    42001 tgaatctcca tcgtctgctt atcgaagtgc ggttccagtg catcataagc gtacggcagg
    42061 gatggcagtg tataactcat aatcatctcc attattgtcg agcggcacag tgttaacgcc
    42121 gcgtaagcag ttggttcatt atagttaatt aaatgatatt gaaaatgatt atcaatgccg
    42181 tactttttcc agggttataa acgttacggc atccgctgaa aaaaaccgat ttttacgcct
    42241 ccaaccgaaa ccgcctgttg atgaattcct ggaaatcatg aaatgtgaaa cagggtttca
    42301 aaatctttct tttggtgcca atttttatca gcggtggcaa aatcaagaag gttataattt
    42361 caccatgcaa ttacattccc ggtaaattat tacaattgcg agggaattat gaagcaacct
    42421 ggttttatac gtctggctac gttggcctta ctctccacac tctctttctt ctcccacggc
    42481 gaaaccattt tgcgcctggc ctacgctgaa aatagccagc cggtaaaaga tgcgttgcac
    42541 ttcctggggc agcaagttga agagaaaacg ggcggcgata tcaaagtaca gtacttcccg
    42601 gacggacagc ttggcggcga gcgcgaactg gtggagttga cgcaggtcgg cgtcgtcgac
    42661 atcactaaag tgtcgtccgg gctgatggag agtttttcgc ctgagtacgg cgtgttctca
    42721 cttccctacc tgtttgccac cgtcgatgaa tactaccgcg taatggataa cccacaggtg
    42781 aggagcctgt ttatcagtcc accgccgcac agggttttgt cggcgtaggc tggtatgatt
    42841 ccggcgcgcg taatttttat atgagcaaag cgccggttaa acgcattgag gatttacgcg
    42901 ggaagaagat ccgcgtcatg cagagtgaga cggcgatcca aactctcaaa ctgctgggcg
    42961 cttcgcccat cgccatgagc caggcggagg tctatacctc gttacaacaa ggcattctcg
    43021 acggcgcgga aaacaatgag ttcgctctca ccatcgcccg ccacggcgaa gtcgcccgtt
    43081 attacaccta cgatatgcac acccgcattc ccgatatcct gctaatgagt accctcacgc
    43141 tggaaaagct gacgccggaa cagcagcgca tcgtcgaagc cgccatcaag gcgtcgatcg
    43201 aatttgagaa agccgcatgg gacaaggaaa tagagaaaac caggctggcg gcggtaaaag
    43261 atttcaacgt tgaattctac gagatcgaca aaaaaccctt ccagaaggca gtacagccta
    43321 tttacgacgg tctgaaaaac aaaccgcggc tttacgggct gtatcaacgt atccagacag
    43381 caaaaaatta atctaatcag gaaattaaga tgaacacatt cagaaaagga cttgatttat
    43441 tgctgggcgc tatctgttgc ctggtgctgg cgataatggt tggcatcgcc tgctggcagg
    43501 tggtgagccg ctacattctg ggcgttccca gcacccttac cgaagagatg ctgcgatttc
    43561 tcctggtgtg ggtatcaatg ctgggcatgg cttttgtcgc cggtcagaaa cagcatatca
    43621 gtctgactat cttactggat aaggtgtcgc cgacgattcg cggctggtgg gatatcatcc
    43681 tgcaggtcat ttttatcgcg ttttccattt gggtattgat tatcggcggc ttaaagattt
    43741 ctgcgatttc tatgctgcaa atctcccctg cgctgggcat tccgatgggg aaaatttatt
    43801 acgcgctccc ctgcgcgggc atactgatca tcctctatgg gctactgaat atcgttgacg
    43861 ccctgaaagc tatccattcc gccacggata ccactgagca cactctggag aaatcacatg
    43921 attgacccta tttttgcgtc ctgtacgcta attgccgtct ttgttgtttt actggccatg
    43981 ggcgcgccta tcgggatctg catcgttatc gcctctttca gcaccatgat gctggtactg
    44041 cctttcgata tttcgatgtt cgccaccgcg caaaaaatgt tctccagcct ggacagtttt
    44101 gccttgctgg ccgtgccgtt cttcgttttg tccggggtga tcatgaatag cgggggaatt
    44161 gccgcccgac tggtcaattt tgccaaactg tttactggca aactgcccgg ctcgctctct
    44221 tacaccaaca tcgtcggcaa tatgatgttc ggtgcaattt ccggatcggc gattgccgcc
    44281 tcaacctcta tcggcggcgt gatggtgccg atgagcgcgc gcgaaggtta cgatcgcggt
    44341 tttgcggccg cggtgaatat cgcctccgcg ccgacgggaa tgttaattcc gcccaccacg
    44401 gcttttatcc tttatgcgct ggcaagcggg ggaacatcga ttgccgctct gttcgccggc
    44461 ggtctggtcg cgggagtgct gtggggcgtt ggctgtatgc tggtcacgct ggtggtcgct
    44521 aagcgtcgaa attatcgggt tttcttcacc gtccaaaaag gcatggcgct aaaagttgcc
    44581 gttgaggcca ttcccagcct gttactgatc gtgattattg tcggcggcat tgtgcagggg
    44641 attttcaccg ccattgaagc ctccgcgatt gccgtggtgt atacgttatt gctgacgata
    44701 gtgttttacc gcacgctgaa aattaaggat ttgccttcga ttttgctcca gacagtggta
    44761 atgaccgggg tcatcatgtt cctgctggca acctcttcgg cgatgtcctt ctcgatgtcg
    44821 atcaccaata ttcctgcggc gctgagcgat atgatcctcg gtatttccgc caataaactg
    44881 gttatcctgt tagtcattac cgtctttttg ttgattatcg gcgcatttat ggatatcggt
    44941 ccggccattc tgatttttac cccgattctg ctgccgatta tgactaaact gggcgtcgat
    45001 ccggtgcatt tcggcattat catgatctat aacctggcga taggcaccat tacgccgcca
    45061 gttggcagtg gtttatatgt cggggcgagc gtcggtaagg tcaaagttga ggacgttatc
    45121 aaaccgttga tgccttttta cggcgcgatt atcggcgttc tgttattaat tacctacatt
    45181 ccggaaatca cactgttttt accccgtcta ctgggcatca tgtaaggcat agtttcctgc
    45241 acatctcgtt gccggatggc gattcgcgtc ttatccggcc aacgcgcgat aataattatc
    45301 cgcaggtcat caccaggtaa aaaaaccggc tacctataaa gtagccggaa aagggaataa
    45361 ataataaaca gggataatga ttagaatgtg tagcctatac ccacgcggaa acgggtttgt
    45421 ctttcatcgc tgttgctatt gacggaaaca ttacctacct caacgaatgg cgaccattgg
    45481 tcaataatat aggcagttct gaagttatat tcatagttat ctttgccgcc atcgtaaaga
    45541 tcatatttat cggctttctt ataaattcct tcgattgtcc agtcaaagtt gttccattta
    45601 taacccgccc agacatccat acgattgatg gtatcatcat cacggatatc agaagaacgg
    45661 cgtacatatt caaaacgata gcgcgcgcca acccaccaac tttcatttaa tgtccacgtc
    45721 gcgcggaagt aaggcttata ggtagagtaa ccgttgcctg tttccagcac aaaacccggt
    45781 tgccaggcga catcaccggt tttaaattgg tagcttatcg tatattcgtt accctgtgtt
    45841 tccaggtcat taaacgcttt attggtgtca tccccgcctg attttgagat agcttctatc
    45901 gcaaaaccaa caccattcgc aaaccgatga gaaatatacg cacggtcata gttagcttta
    45961 ctgtcatcaa gatattcatg acgaac
//
LOCUS       DAJVSD010000008        41579 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.008, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000008 DAJVSD010000000
VERSION     DAJVSD010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 41579)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 41579)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..41579
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.008"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            163..1272
                     /gene="livK"
                     /locus_tag="OQP62_000347"
     CDS             163..1272
                     /gene="livK"
                     /locus_tag="OQP62_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter substrate-binding protein LivK"
                     /protein_id="HCS1719988.1"
                     /translation="MKRKAKTIIAGIVALAVSQGAMADDIKVAIVGAMSGPVAQWGDM
                     EFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIQYVIGHLCS
                     SSTQPASDIYEDEGILMISPGATNPELTQRGYQYIMRTAGLDSSQGPTAAKYILETVK
                     PQRIAIIHDKQQYGEGLARSVQDGLKQGNANIVFFDGITAGEKDFSALIARLQKENID
                     FVYYGGYYPEMGQMLRQARANGLKTQFMGPEGVGNASLSNIAGGAAEGMLVTMPKRYD
                     QDPANKAIVEALKADKKDPSGPYVWITYAAVQSLATAMTRSASHAPLDLVKDLKANGA
                     DTVIGPLKWDEKGDLKGFEFGVFQWHADGSSTVAK"
     gene            1332..2258
                     /gene="livH"
                     /locus_tag="OQP62_000348"
     CDS             1332..2258
                     /gene="livH"
                     /locus_tag="OQP62_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010436488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter permease LivH"
                     /protein_id="HCS1719989.1"
                     /translation="MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHG
                     EVYMIGSYVSFMIIAALMMMGIDTSWLLVAAGFIGAIIIASAYGWSIERVAYRPVRNS
                     KRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFNGQWIVGSSENFSASITTMQAVI
                     WIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAV
                     AGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGVAEALSSAYLS
                     TEYKDVVSFALLILVLLVMPTGILGRPEVEKV"
     gene            2255..3532
                     /gene="livM"
                     /locus_tag="OQP62_000349"
     CDS             2255..3532
                     /gene="livM"
                     /locus_tag="OQP62_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched chain amino acid ABC transporter
                     permease LivM"
                     /protein_id="HCS1719990.1"
                     /translation="MKPMHIAMALFSAAMFFVLAGVFMGVQLELDGTKLVVDTAADIR
                     WQWIFIGTAVVFFFQLLRPMFQKAVKHVSGPKFILPAIDGSTVKQKLFLMALLVIAVA
                     WPFMVSRGSVDIATMTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYY
                     GLGFWTCLPLAGLVSAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGG
                     PNGISQIPKPTLFGLEFSRNTREGGWDTFSNFFGVKYDPSDRVIFLYLVALLLVVLSL
                     FVINRLLRMPLGRAWEALREDEIACRSLGLSPTRIKLTAFTISAAFAGFAGTLFAARQ
                     GFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAVLLVVSRELMRDFNEYSMLMLGG
                     LMVLMMIWRPQGLLPMTRPQLKLKSGQAKGEQA"
     gene            3529..4296
                     /gene="livG"
                     /locus_tag="OQP62_000350"
     CDS             3529..4296
                     /gene="livG"
                     /locus_tag="OQP62_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000084170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter ATP-binding protein LivG"
                     /protein_id="HCS1719991.1"
                     /translation="MSQPLLAVNGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGK
                     TTVFNCLTGFYKPTGGTITLRERHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLL
                     VAQHQQLKTGLFSGLLKTPAFRRAQSEALDRAATWLERIGLLEHANRQASNLAYGDQR
                     RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVM
                     GISDRIYVVNQGTPLANGTPEEIRNNPDVIRAYLGEA"
     gene            4298..5011
                     /gene="livF"
                     /locus_tag="OQP62_000351"
     CDS             4298..5011
                     /gene="livF"
                     /locus_tag="OQP62_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter ATP-binding protein LivF"
                     /protein_id="HCS1719992.1"
                     /translation="MEKTMLTFEKVSAHYGKIQALHDVSLHINQGEIVTLIGANGAGK
                     TTLLGTLCGDPRASSGRVVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLA
                     MGGFFAERDRFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL
                     LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLS
                     DTGDALLANEAVRSAYLGG"
     gene            5175..5453
                     /locus_tag="OQP62_000352"
     CDS             5175..5453
                     /locus_tag="OQP62_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000621258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1719993.1"
                     /translation="MIRSGACIMGTLLFAASFSVNALTSNDFDPRDPAIWQEETATPY
                     PLAATTCEVRHHPDCATWEDEKSDIQRERERRDQRRLQNLYKKYSHRD"
     gene            5685..7001
                     /gene="ugpB"
                     /locus_tag="OQP62_000353"
     CDS             5685..7001
                     /gene="ugpB"
                     /locus_tag="OQP62_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     substrate-binding protein UgpB"
                     /protein_id="HCS1719994.1"
                     /translation="MISLRHTALGLALSLAFTGQALAVTTIPFWHSMEGELGKEVDSL
                     AQRFNQANPDYKIVPVYKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIK
                     PVYEVFKDAGINFDESQFVPTVAGYYTDAKSGHLLSQPFNSSTPVLYYNKDAFKKAGL
                     DPEQPPKTWQELADYTAKLRAAGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDG
                     TDAVLEFNKPEQVKHIALLEEMNKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLAN
                     IRQYAKFNYGVGMMPYDADIKGAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKP
                     ENAAEWHQKTGYLPITTAAYELTREQGYYDKNPGADIATRQMLNKPPLPFTKGLRLGN
                     MPQIRTIVDEELESVWTGKKTPQQALDTAVDRGNQLLRRFEKASKS"
     gene            7106..7993
                     /gene="ugpA"
                     /locus_tag="OQP62_000354"
     CDS             7106..7993
                     /gene="ugpA"
                     /locus_tag="OQP62_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000099274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter permease
                     UgpA"
                     /protein_id="HCS1719995.1"
                     /translation="MSSSRPVFRSRWLPYLLVAPQLVITVIFFIWPAGEALWYSLQSV
                     DPFGFSSQFVGLENFVALFHDSYYLDAFWTTIKFSALVTFSGLLVSLFFAALVDYVVR
                     GSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLGEFGYDWNHAQNSGQAMFL
                     VVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFRLSLPLIAPVSFFL
                     LVVNLVYAFFDTFPVIDAATAGGPVQATTTLIYKIYCEGFTGLDLSASAAQSVVLMFL
                     VIILTVVQFRYVESKVRYQ"
     gene            7990..8835
                     /gene="ugpE"
                     /locus_tag="OQP62_000355"
     CDS             7990..8835
                     /gene="ugpE"
                     /locus_tag="OQP62_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000572177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter permease
                     UgpE"
                     /protein_id="HCS1719996.1"
                     /translation="MIENRRGLTIFSHTMLILGIAVILFPLYVAFVAATLDDRAVFET
                     PMTLLPGTQLLENIKTIWVNGVGVNSAPFWLMMLNSFIMAFSITVGKITVSMLSAFAI
                     VWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLNSYAGLTLPLMASATATF
                     LFRQFFMTLPDELVEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWP
                     LLIITDVNLGTAVAGIKGMIATGEGTTQWNQVMAAMLLTLIPPVVIVLAMQRAFVRGL
                     VDSEK"
     gene            8838..9908
                     /locus_tag="OQP62_000356"
     CDS             8838..9908
                     /locus_tag="OQP62_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate import ATP-binding
                     protein UgpC"
                     /protein_id="HCS1719997.1"
                     /translation="MAGLKLQAVTKSWGGKTQVIQPLTLDVADGEFIVMVGPSGCGKS
                     TLLRMVAGLERVTSGDIWIDRKRVTEMEPKDRGIAMVFQNYALYPHMSVEENMAWGLK
                     IRGMSKAHIEERVREAARILELDGLLKRRPRELSGGQRQRVAMGRAIVREPAVFLFDE
                     PLSNLDAKLRVQMRLELQHLHRRLRTTSLYVTHDQVEAMTLAQRVMVMNKGVAEQIGT
                     PVEVYEKPASRFVASFIGSPAMNLLDGVISASGDRFELPGGLALPIGAGYRGHAGRKM
                     TLGIRPEHIALSSQAEGGVPLTVDTLEILGADNLAHGRWGDQKLVVRLAHQQRPAAGS
                     TLWLRLPEHQRHLFDGETGQRV"
     gene            9905..10645
                     /gene="ugpQ"
                     /locus_tag="OQP62_000357"
     CDS             9905..10645
                     /gene="ugpQ"
                     /locus_tag="OQP62_000357"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HCS1719998.1"
                     /translation="MSNWPYPHIVAHRGGGKLAPENTLAAIDVGARYGHTMIEFDAKL
                     SKDGEIFLLHDDNLERTSNGWGVAGELNWQDLLRVDAGGWFSGEFKGEPLPLLSQVAE
                     RCRKHGMMANIEIKPTTGSGRLTGRVVALAARELWAGMTPPLLSSFEIEALEAAQAAV
                     PELPRGLLLDKWREDWRELTTRLGCVSLHLNHKLLDETRVQEIKAAGLRILVYTVNQP
                     QRAAELLRWGVDCICTDRIDDIGPHFQF"
     gene            complement(10642..11013)
                     /locus_tag="OQP62_000358"
     CDS             complement(10642..11013)
                     /locus_tag="OQP62_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2756 family protein"
                     /protein_id="HCS1719999.1"
                     /translation="MKRLLLITALLPFAVLAQPINTMNNPNQPGYQIPSQQRMQTQMQ
                     TQARSQQQNLQSQLNANTQRVQQGQPGNGMLGQQTLPNTQGGMLSGSGNPDRMLNHSQ
                     PMLQQDSGTPQPDIPLKTISP"
     gene            11139..12881
                     /gene="ggt"
                     /locus_tag="OQP62_000359"
     CDS             11139..12881
                     /gene="ggt"
                     /locus_tag="OQP62_000359"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HCS1720000.1"
                     /translation="MKPTFMRWVAIAALLAGGTFSAVANPPVAPPVSYGVEEDVFHPV
                     RATQGMVASVDAMATQVGVDILKQGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLLR
                     TKDGATTAIDFREMAPAAATRDMFLDDQGNADAKKSLTSHLASGTPGTVAGFSLALEK
                     YGTMPLNKVVRPAMKLAEEGFVVNDALADDLKTYGSEVIPNHENSKAIFWKDGEPLKK
                     GDKLIQKNLAKSLEMIAENGPAAFYKGAIADQIAGEMQKNGGLMTKEDLASYKAVERT
                     PISGDYRGYQVFSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAY
                     ADRSEYLGDPDFVKVPWQALTNKAYAKTLADQIDINKAKPSSQIKPGKLAPYESNQTT
                     HFSVVDKDGNAVAVTYTLNTTFGTGIVAGNTGILLNNQMDDFSAKPGVPNVYGLVGGD
                     ANAVEPKKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDFGMNVAEA
                     TNAPRFHHQWLPDELRVEKGFSPDTLKLLEQKGQKVALKEAMGSTQSIMVGPDGELYG
                     ASDPRSVDDLTAGY"
     gene            complement(12926..13960)
                     /locus_tag="OQP62_000360"
     CDS             complement(12926..13960)
                     /locus_tag="OQP62_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotriesterase"
                     /protein_id="HCS1720001.1"
                     /translation="MKGFLQTVTGPVAHTDMGLTLPHEHLFNDLSSVVDEPHYAFSQQ
                     LVGKKVSADLQWGLKHDPYCCADNMDRKEIDDVIFEINNFMSLGGRTIVDATGSESIG
                     RDASALREVALKTGLNIVASSGPYLEKFESTRIHKPVELLASLIDKELNQGIGETDIR
                     AGMIGEIGVSPAFTQAERNSLRAASLAQCNNPHTAMNIHMPGWLRLGDEVLDIVLEEM
                     NVSPAKVSLAHSDPSGKDVVYQRKMLDRGVWLEFDMIGLDITFPKEGVAPGVQETADA
                     VANLIALGYADQIVLSHDVFLKQMWAKNGGNGWGFVPNVFLAYLAARGVDNDTLRKLC
                     IDNPARLLTA"
     gene            complement(13957..14928)
                     /locus_tag="OQP62_000361"
     CDS             complement(13957..14928)
                     /locus_tag="OQP62_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1720002.1"
                     /translation="MNKNKYSTPLLMLATILAGMLSPMQSAVNGQLGHWLQDGNACAV
                     ISFASGLVVMFFIIIARKETRQQFASIPTLIKKRKIPLWNWFAGLCGAMVVFSEGASA
                     SALGVATFQTALISALLLSGLLCDRFGIGVEEKKYFTPWRITGALFAVIATIFVVSPQ
                     WHSTSFILLAILPFLAGLLAGWQPAGNAKVAEATGSMLVSITWNFIVGFCVLGAALAI
                     RIALGHVTIQLPDTWWMYLGGPLGLLSIGLMAILVRGLGLLMLGVASTAGQLLGSVLI
                     DELIPSLGNTVYLVTIIGTLFALVGAIVTTIPEYRASKMAQKMEVSE"
     gene            complement(14982..15743)
                     /locus_tag="OQP62_000362"
     CDS             complement(14982..15743)
                     /locus_tag="OQP62_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoplasmic protein"
                     /protein_id="HCS1720003.1"
                     /translation="MNNTQKKLKVLFIGESWHIHMIHSKGYDSFTSSKYEEGATWLLE
                     CLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKP
                     NALESIKEYVKNGGGLLMIGGYLSFMGIEAKANYKNTVLAEVLPVIMLDGDDRVEKPE
                     GICAEAVSPEHPVVNGFSDYPVFLGYNQVVARDDADVVLTINNDPLLVFGEYQQGKTA
                     CFMSDCSPHWGTQQFMSWPFYTDLWVNTLQFIARK"
     gene            complement(15759..16973)
                     /locus_tag="OQP62_000363"
     CDS             complement(15759..16973)
                     /locus_tag="OQP62_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462448.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR family transcriptional regulator"
                     /protein_id="HCS1720004.1"
                     /translation="MKFERHHRILKELSISGVVKVSNLAKSLKVTKETIRSDLNELAG
                     QGYLTRCHGGAFITLDSLDNVAKNEIAYVLEKYESAQKIKKGLSAMKNNVCVIGSFNV
                     DIISYLPRLPSTGESLLADKFIFSPGGKGCNQALAASYADSDVHFITKVGSDHFSDYA
                     INFINSSKIHKSVIYQTKETQTGTATIMVNGDTGDNVIAIYPGANMTISPDEITIQKE
                     AIVHSDIVLVQLETNYEALQQTIRLAQKNDIPVIINPAPYNDMVNTIIDNIDYITPNE
                     TEAGLLANMAVNDIESAKCAAKIIHQKGVKNTIITLGSKGSLAYDGTQFIYSPAFPAV
                     VKNTAGAGDAFNGALSSGLAKGKSLASALCYASAFASLAVETPNASDMPENDSVLHRI
                     QGSHYKQTISTH"
     gene            complement(17238..17726)
                     /gene="yhhY"
                     /locus_tag="OQP62_000364"
     CDS             complement(17238..17726)
                     /gene="yhhY"
                     /locus_tag="OQP62_000364"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS1720005.1"
                     /translation="MSEIVIRHAEPKDYDAIRQIHAQPEVYHNTLQVPHPSLEMWQAR
                     LTEQAGVKQLVACIDDIVVGHLSIQVTQRPRRSHVADFGICVDARWHNRGIASALIRT
                     MIDMCDNWLRVERIELTVFVDNEPAVAVYKKYGFEIEGTGKKYGLRNGEYVDTYFMAR
                     VK"
     gene            18193..19230
                     /locus_tag="OQP62_000365"
     CDS             18193..19230
                     /locus_tag="OQP62_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS1720006.1"
                     /translation="MTLHCAFIGFGKSTTRYHLPYVLNRKDTWHVAHIFRRHAKPEEQ
                     APQYSHIHFTSDLDEVLGDPQVKLVIVCTHADSHFEYAKRALEAGKNVLVEKPFTPTL
                     AEAKVLFELARSKGLTVTPYQNRRFDSCFLTAKKAIESGKLGKIVEIESHFDYYRPVA
                     ETKPGLPQDGAFYGLGVHTMDQIISLFGRPDHVAYDIRSLRNKANPDDTFEAQLFYGA
                     LKAIVKTSHLVKIDYPKFIVHGTKGSFVKYGIDQQETSLKANIMPGEPGFAADESVGV
                     LEYVNDEGVTVKEEVKPETGDYGRVYDALYQTLTIGTPNYVKESEVLTNLEILERAFE
                     QATPATITLAK"
     gene            19354..20049
                     /locus_tag="OQP62_000366"
     CDS             19354..20049
                     /locus_tag="OQP62_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004213399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HCS1720007.1"
                     /translation="MIYLRKANDRGHANHGWLDSWHTFSFADYYDPNFMGFSALRVIN
                     DDVIDAGQGFGTHPHKDMEILTYVLEGAVEHQDSMGNKEQVPAGEFQIMSAGTGVRHS
                     EYNPSKTDRLRLYQIWIIPQETGITPRYEQRRFDAAQGKQLVLSPDARDGSLKVHQDM
                     ELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTINGTKATTSDGLAIWDEQAISIHAD
                     SDSEVLLFDLPPV"
     gene            20416..21411
                     /gene="gntR"
                     /locus_tag="OQP62_000367"
     CDS             20416..21411
                     /gene="gntR"
                     /locus_tag="OQP62_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001693277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate operon transcriptional repressor GntR"
                     /protein_id="HCS1720008.1"
                     /translation="MKKKRPVLQDVADRVGVTKMTVSRFLRNPEQVSVALRGKIAAAL
                     DELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIEAVTDAHGYQTMLAHYG
                     YKPEMEQERLESMLSWNIDGLILTERTHTPRTLKMIEVAGIPVVELMDSQSPCLDIAV
                     GFDNFEAARQMTAAIIARGHRHIAYLGARLDERTIIKQKGYEQAMRDAGLVPYSVMME
                     QSSSYSSGIELMRQARREYPQLDGIFCTNDDLAVGAAFECQRLGLKIPDDMAIAGFHG
                     HDIGQVMEPRLASVLTPRERMGSIGAERLLARIRGETVTPKMLDLGFTLSPGGSI"
     gene            21550..22083
                     /gene="gntK"
                     /locus_tag="OQP62_000368"
     CDS             21550..22083
                     /gene="gntK"
                     /locus_tag="OQP62_000368"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HCS1720009.1"
                     /translation="MSTTNHDHHVYVLMGVSGSGKSAVASAVAHQLHAAFLDGDFLHP
                     RCNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKISLIVCSALKKHYRDLLREGN
                     PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADERDVLVVDIDQPL
                     EGVVASTIEVINKGSTL"
     gene            22080..23420
                     /gene="gntU"
                     /locus_tag="OQP62_000369"
     CDS             22080..23420
                     /gene="gntU"
                     /locus_tag="OQP62_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate transporter"
                     /protein_id="HCS1720010.1"
                     /translation="MSTLTLVLTAVGSVLLLLFLVMKARMHAFVALMVVSMGAGLFSG
                     MPLDKIAATMEKGMGGTLGFLAIVVALGAMFGKILHETGAVDQIAVKMLKSFGHNRAH
                     YAIGLAGLICALPLFFEVAIVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLLP
                     GPAPMLLASQMHADFGWMILIGLCAAIPGMIIAGPLWGNFISRYVELRIPDDITEPHL
                     GEGKMPSFGFSLSLILLPLVLVGLKTIAARFVPEGSTAYEWFEFIGHPFTAILVACLV
                     AIYGLAMRQGMPKDKVMEICGHALQPAGIILLVIGAGGVFKQVLVDSGVGPALGEALT
                     GMGLPIAITCFVLAAAVRIIQGSATVACLTAVGLVMPVIEQLNFSGAQMAALSICIAG
                     GSIVVSHVNDAGFWLFGKFTGATEAQTLKTWTMMETILGTVGAIVGMIAFQLLS"
     gene            complement(23343..23717)
                     /locus_tag="OQP62_000370"
                     /pseudo
     CDS             complement(23343..23717)
                     /locus_tag="OQP62_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_452851.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
     gene            23843..24949
                     /gene="asd"
                     /locus_tag="OQP62_000371"
     CDS             23843..24949
                     /gene="asd"
                     /locus_tag="OQP62_000371"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HCS1720011.1"
                     /translation="MKNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQFGQAA
                     PTFGDTSTGTLQDAFDLDALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASTL
                     RMKDDAIIILDPVNQDVITDGLNNGVKTFVGGNCTVSLMLMSLGGLFAHNLVDWVSVA
                     TYQAASGGGARHMRELLTQMGQLYGHVADELATPSSAILDIERKVTALTRSGELPVDN
                     FGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTASVIPVDGLCVRVGALRCHS
                     QAFTIKLKKEVSIPTVEELLAAHNPWAKVVPNDRDITMRELTPAAVTGTLTTPVGRLR
                     KLNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQLA"
     gene            25325..27511
                     /gene="glgB"
                     /locus_tag="OQP62_000372"
     CDS             25325..27511
                     /gene="glgB"
                     /locus_tag="OQP62_000372"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching enzyme"
                     /protein_id="HCS1720012.1"
                     /translation="MSSRIDRDVINALIAGHFADPFSVLGMHQTQAGLEVRALLPDAT
                     DVWVIEPKTGRKVGKLECLDARGFFCGVLPRRKNFFRYQLAVTWHGQQNLIDDPYRFG
                     PLIQEMDAWLLSEGTHLRPYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWD
                     GRRHPMRLRKESGIWELFIPGAHNGQLYKFELLDANGNLRIKADPYAFEAQMRPETAS
                     MICGLPEKVTPSEERQKANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYA
                     KWMGFTHLELLPVNEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFINAAHAAGLNVIL
                     DWVPGHFPSDEFSLAEFDGTHLYEHSDPREGYHQDWNTLIYNYGRREVSNYLVGNALY
                     WMERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRIIGEQV
                     PGAVSMAEESTDFSGVTRPPETGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLT
                     FGMLYNHTENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLL
                     FMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNHTYRHHKALHELDFDAY
                     GFEWLVVDDNERSVLIFVRRDKAGNEIIVASNFTPVPRHDYRFGINQPGRWREILNTD
                     SMHYHGSNTGNGGVVHSDEIESHGRQHSLNLTLPPLATIWLMREGE"
     gene            27508..29472
                     /gene="glgX"
                     /locus_tag="OQP62_000373"
     CDS             27508..29472
                     /gene="glgX"
                     /locus_tag="OQP62_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HCS1720013.1"
                     /translation="MTQLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVFDSRGNE
                     RRYDLPGRRGDVWHGYLAGARPGLRYGYRVHGPWQPAQGHRFNPAKLLLDPYARQVEG
                     ELKDHPLLHGGHDEPDYRDNAAVAPKSVVISDHYDWEDDAAPRTPWGKTVIYEAHVKG
                     LTYLHPELPQEIRGTYKALGHPVMVAYFKQLGITALELLPVAQFASEPRLQRMGLTNY
                     WGYNPMAMFALHPAWASSPETALDEFRDAVKALHRAGIEVILDIVLNHSAELDLDGPT
                     FSLRGIDNRSYYWIRDDGDYHNWTGCGNTLNLSHPGVVEYACECLRYWMETCHVDGFR
                     FDLASVMGRTPTFRQDAPLFAAIKACPVLSTVKLIAEPWDIGEGGYQVGNFPPPFAEW
                     NDHFRDAARRFWLPRNLTTGEFACRFAASSDVFKRNGRAPGASVNLLTAHDGFTLRDC
                     VCFNQKHNEANGEENRDGTNSNYSDNHGKEGLGGPLDLMERRRDSIHALLATLLLSQG
                     TPMLLAGDEHGHSQHGNNNAYCQDNALTWLDWQQANRGLTTFTAALIRLRQQIPALTG
                     NSWWEEGDGNVRWLNKNAQPLSADEWQNGPKLMQILLSDRFLIAINATLEVTDIVLPE
                     GEWRAVPPFAGEDNPVITAVWQGLCVFQRG"
     gene            29487..30782
                     /gene="glgC"
                     /locus_tag="OQP62_000374"
     CDS             29487..30782
                     /gene="glgC"
                     /locus_tag="OQP62_000374"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HCS1720014.1"
                     /translation="MVSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPA
                     VHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGWSLFSEEMNEFVDLL
                     PAQQRMKGENWYRGTADAVTQNLDIIRCYKAEYVVILAGDHIYKQDYSRMLIDHVEKG
                     ARCTVACMPVPIKEATAFGVMAVDENDKIIDFVEKPANPPAMPGDASKSLASMGIYVF
                     DADYLYELLAADDKDDASSHDFGKDIIPKITREGMAYAHPFPLSCVQSDPQAEPYWRD
                     VGTLEAYWKANLDLASVTPELDMYDQNWPIRTHMESLPPAKFVQDRSGSHGMTLNSLV
                     SGGCIISGSVVVQSVLFPRVRINSFCNIDSAVLLPEVWVGRSCRLRRCVIDRACIIPE
                     GMVIGENAEEDARRFYRSEEGIVLVTREMLRKLQVKQER"
     gene            30782..32215
                     /gene="glgA"
                     /locus_tag="OQP62_000375"
     CDS             30782..32215
                     /gene="glgA"
                     /locus_tag="OQP62_000375"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HCS1720015.1"
                     /translation="MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDVRVLLPGF
                     PDIRRGIPDAHVVSRRDTFAGKISLLFGHYNGVGIYLIDAPHLYERPGSPYHDTNLYA
                     YIDNVLRFALLGWVGCEMACGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTV
                     HNLAYQGMFYAKHMDDIELPWSFFNMHGLEFNGQLSFLKAGLYYADHITAVSPTYARE
                     ITEPQFAYGMEGLLRQRHLEGRLSGILNGVDEKIWNPESDLLLASRYTRDTLEEKAEN
                     KRQLQIAMGLKVNDKVPLFAVVSRLTNQKGLDLVLEALPGLLEQGGQLALLGAGDPVL
                     QEGFLAAAAEHPGQAGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTL
                     PLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRF
                     VQRQAMAMDFSWQVAAKSYRELYYRLK"
     gene            32235..34682
                     /gene="glgP"
                     /locus_tag="OQP62_000376"
     CDS             32235..34682
                     /gene="glgP"
                     /locus_tag="OQP62_000376"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010436446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen phosphorylase"
                     /protein_id="HCS1720016.1"
                     /translation="MNAPFTYASPTLSVEALKHSIAYKLMFTIGKDPVIANKHEWLNA
                     TLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNALLSLGIYDDVKGAL
                     EAMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNI
                     VDGRQKESPDYWLEYGNPWEFKRHNTRYKVLFGGRIQQEGKKARWIETEEILAVAYDQ
                     IIPGYDTDATNTLRLWNAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTY
                     SGRELRLRQEYFLVSATVQDILHRHYQLHKTYENLADKIAIHLNDTHPVLSIPELMRL
                     LIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYF
                     LKTLQEQYPNDTSLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLF
                     ADFAKIFPTRFCNVTNGVTPRRWLALANPPLSDVLDENIGRTWRTDLSQLSELKQHCD
                     YPLVNHAVRQAKLENKKRLAVVIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVI
                     TRYNRIKENPEADWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKV
                     VFIPNYSVSLAQVIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMQ
                     EHVGEENIFIFGNTAEEVEALRRQGYKPRDYYEKDEELHQVLTQIGNGVFNPEEPGRY
                     RDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYRRPEEWTTKAMLNIANMGYFSSDR
                     TIKEYAENIWHIDPVRL"
     gene            complement(34774..36282)
                     /gene="glpD"
                     /locus_tag="OQP62_000377"
     CDS             complement(34774..36282)
                     /gene="glpD"
                     /locus_tag="OQP62_000377"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase"
                     /protein_id="HCS1720017.1"
                     /translation="METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSA
                     SSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIR
                     IGLFMYDHLGKRTSLPGSTGVRFGADSVLKPEIVRGFEYSDCWVDDARLVLANAQMVV
                     RKGGEVLTRTRATAARRENGLWIVEAEDIDTGKKYVWQARGLVNATGPWVKQFFDEGM
                     HLPSPYGIRLIKGSHIVVPRVHNQKQAYILQNEDKRIVFVIPWMEEFSIIGTTDVEYK
                     GDPKAVKIEESEINYLLKVYNAHFQKQLGRDDIVWTYSGVRPLCDDESDSPQAITRDY
                     TLDIHDENGKAPLLSVFGGKLTTYRKLAEHAMEKLASYYPGIGPAWTKTCVLPGGDID
                     GSREDYAAKLRRRYPFLTESLARHYSRTYGSNTEWILGEATSLLDLGEDFGHEFYEAE
                     LKYLVDHEWVRRTEDAIWRRTKEGMWLTAEQQSRITQWLAAYVEKHQLSLAS"
     gene            36481..36807
                     /gene="glpE"
                     /locus_tag="OQP62_000378"
     CDS             36481..36807
                     /gene="glpE"
                     /locus_tag="OQP62_000378"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase GlpE"
                     /protein_id="HCS1720018.1"
                     /translation="MEQFECITVEEAYQKLHQGAAVLVDIRDPQSYAMGHAPQAFHLT
                     NDTLGAFMREHGFDTAVMVMCYHGNSSKGAAQYLLQQGYDAVYSIDGGFEAWHRRFPA
                     DVANGA"
     gene            36883..37713
                     /gene="glpG"
                     /locus_tag="OQP62_000379"
     CDS             36883..37713
                     /gene="glpG"
                     /locus_tag="OQP62_000379"
                     /EC_number="3.4.21.105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease
                     GlpG"
                     /protein_id="HCS1720019.1"
                     /translation="MLMITSFANPRVAQAFVDYMATQGVILTIQQHNQSDIWLADESQ
                     AERVRVELARFIENPGDPRYLAASWQSGQTNSGLRYRRFPFLATLRERAGPVTWIVML
                     ACVVVYIAMSLIGDQTVMVWLAWPFDPVLKFEVWRYFTHIFMHFSLMHILFNLLWWWY
                     LGGAVEKRLGSGKLIVITVISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERD
                     PQSGIYLQRGLIIFALLWIVAGWFDWFGMSMANGAHIAGLIVGLAMAFVDTLNARKRT
                     "
     gene            37806..38564
                     /locus_tag="OQP62_000380"
     CDS             37806..38564
                     /locus_tag="OQP62_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000815090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family transcriptional regulator"
                     /protein_id="HCS1720020.1"
                     /translation="MKQTQRHDAIIELVKKQGYVSTEELVEHFSVSPQTIRRDLNDLA
                     EQNMILRHHGGAALPSSSVNTPWHDRKATQTEEKERIARKVAAQIPNGSTLFIDIGTT
                     PEAVAHTLLGHSNLRIVTNNLNVANTLMAKEDFRIILAGGELRSRDGGIIGEATQDFI
                     AQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVN
                     MGSISMVDAVYTDTLPPPGVMQVIADHHIQLELC"
     gene            complement(38638..41343)
                     /gene="malT"
                     /locus_tag="OQP62_000381"
     CDS             complement(38638..41343)
                     /gene="malT"
                     /locus_tag="OQP62_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MalT"
                     /protein_id="HCS1720021.1"
                     /translation="MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLLLVTSPAGYG
                     KTTLVSQWAAGKNELGWYSLDEGDNQQERFASYLIAAIQQATGGHCSTSEAMAQKRQY
                     ASLTSLFAQLFIELAQWHRPLYLVIDDYHLITNPVIHDAMRFFLRHQPENFTLVVLSR
                     NLPQLGIANLRVRDQLLEIGSQQLAFNHQEAKQFFDRRLSSPIEAAESSRMCDDVAGW
                     ATALQLIALSARQNHTSAHHSARRLAGINASHLSDYLVDEVLDNVDVSTRHFLLKSAI
                     LRSMNDALIVRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFSYHPLFGSFLRQRCQW
                     ELAAELPEIHRAAAESWMEQGFPSEAIHHALAAGDAQMLRDILLNHAWGLFNHSELAL
                     LEESLKALPWESLLENPRLVLLQAWLMQSQHRYSEVNTLLARAEQEIKGVMDGTLHAE
                     FNALRAQVAINDGNPEEAERLAKLALDELPLAWFYSRIVATSVHGEVLHCKGNLSQSL
                     SLMQQTEQMARHHDVWHYALWSLIQQSEIQFAQGFLQAAWETQERAFQLIKEQHLEQL
                     PMHEFLVRIRAQLLWAWARLDEAEASARSGIAVLSTFQPQQQLQCLTLLVQCSLARGD
                     LDNARSQLNRLEKLLGNGRYHCDWISNADKVRVIYWQLTGDKKSAANWLRHTPKPAFA
                     NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ
                     SGRKNDAQRVLLDALQLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPEMEQHRAQRI
                     LRYINQHHRHKFAHFDEGFVERLLNHPDVPELIRTSPLTQREWQVLGLIYSGYSNEQI
                     AGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMGYGV"
BASE COUNT         9330 a        10603 c        11696 g         9950 t
ORIGIN      
        1 cttaatagac tgaaaaatag agattttaat cttattatgc tttaaatgct gcgctaactc
       61 attaatgagt cagtaaaaag cgcaccattt ataaaaagta cagtctgctt tttaaccagt
      121 aaaaaacaaa acatataaca tcacgaatgg ggatacaggc acatgaaacg gaaagcgaaa
      181 acaataatcg cagggattgt tgcattagca gtctcgcagg gggcaatggc agatgatatt
      241 aaagtcgcca tagtcggggc gatgtccggc ccggtagcgc aatggggcga tatggaattt
      301 aacggcgcgc gccaggccat taaagacatc aatgctaaag gcggtattaa aggcgataag
      361 ctggtcggcg tagagtacga tgatgcctgc gatccaaaac aggcggtggc ggtggccaac
      421 aaaatcgtta acgacggtat tcagtacgtt attggtcact tgtgttcttc ttctactcag
      481 ccagcatccg atatctatga agatgaaggt attctgatga tctccccggg ggcgactaac
      541 ccggagctga cccagcgcgg ctatcagtac attatgcgta ccgccggcct ggactcctcc
      601 caggggccaa cggccgcgaa atacatcctg gaaacggtga aaccgcagcg catcgctatc
      661 attcacgata aacagcaata cggcgaagga ctggcgcgct ccgtgcagga tggcctgaag
      721 cagggcaatg ccaatattgt cttttttgat ggtattaccg ccggcgaaaa agatttctcc
      781 gccctgattg ctcgcttgca aaaagagaat atcgactttg tgtattacgg cggctactac
      841 ccggaaatgg ggcagatgct gcgccaggcg cgggctaatg gcctgaaaac gcaatttatg
      901 gggccggaag gcgtgggtaa cgcgtcgctg tccaatattg cgggcggtgc ggcggaaggc
      961 atgttggtga cgatgccaaa acgttatgac caggacccgg cgaataaagc gattgtcgag
     1021 gcgctgaaag ccgacaagaa agatcccagc ggtccgtatg tctggatcac ctacgccgcc
     1081 gtccagtcgc tggcgaccgc aatgacgcgt agcgccagcc atgctccgct ggatctggtg
     1141 aaagatctta aagcgaacgg ggctgatacc gttattgggc cgctgaaatg ggatgaaaaa
     1201 ggcgatctta agggatttga atttggcgtc ttccagtggc acgccgacgg ctcgtcaacc
     1261 gtcgcgaagt aatgccagaa gataagttat cccaccgccc gcacgccggg cgggtttaaa
     1321 aaggttacct tatgtccgag cagtttctct atttcttgca gcagatgttt aacggcgtca
     1381 cgctggggag cacctacgcg ctgattgcta tcggttatac gatggtgtac ggcattatcg
     1441 gcatgatcaa cttcgctcat ggcgaggtgt atatgatcgg cagctacgtc tcttttatga
     1501 tcatcgccgc gctaatgatg atgggaatag acaccagttg gctactggtg gccgccggat
     1561 ttatcggcgc gattattatt gccagcgcct acggctggag tatcgagcga gtcgcttacc
     1621 ggcctgtgcg caattccaag cgcctgatcg ccctgatttc cgccatcggg atgtccatct
     1681 ttctgcaaaa ctacgtcagc ctgacggaag gttcgcgcga cgtggcgtta cccagcctgt
     1741 ttaacggcca gtggattgtg ggcagcagcg aaaacttttc cgcgtccatc accaccatgc
     1801 aggcggttat ctggatagtc acctttctgg ctatgctggc gctcaccatt ttcattcgct
     1861 actcccggat gggccgcgcc tgccgcgcct gcgcggagga tctgaaaatg gccagcctgc
     1921 tcggcattaa taccgaccgc gtcattgcgc taacgtttgt tatcggcgcg gcaatggcgg
     1981 cggtggcggg cgtgctgctc ggtcagttct atggcgtgat taacccctac atcggtttta
     2041 tggccgggat gaaagcgttc accgcggcgg tgctgggcgg tattggcagc attccgggcg
     2101 cgatgatcgg cggtctgatt ttgggcgtcg ccgaagcgct ctcgtctgca tatttaagta
     2161 ccgaatataa agatgtcgtg tcgttcgctc tgctgattct ggtactgctg gtgatgccga
     2221 ccggtatcct ggggcgtccg gaggtagaga aagtatgaaa ccgatgcata ttgcgatggc
     2281 tctgttctct gcggcgatgt tcttcgttct ggctggcgtc tttatgggcg tacaactgga
     2341 gctggacggc accaaactgg tggtggatac cgccgccgac atccgctggc agtggatctt
     2401 tatcggtacg gcagtggttt ttttctttca gttgctgcgt ccgatgttcc agaaagcggt
     2461 gaagcacgtc tccggaccga agtttattct gccggcgatc gatggctcta ccgttaagca
     2521 aaagctgttt ctgatggcgc tgttggttat cgccgtggcg tggccgttta tggtgtcgcg
     2581 cggtagcgtc gatatcgcca ctatgaccat gatttatatc atcctcggtc tggggctgaa
     2641 cgtggtggtg gggctgtccg gcctgctggt attgggctac ggcggctttt acgccatcgg
     2701 cgcttatacc tttgcgctgc ttaaccacta ttacggtttg ggtttctgga cctgcctgcc
     2761 gctggcggga ctggtctccg ccgccgccgg tttcctgctc ggcttcccgg tactgcgcct
     2821 gcgcggcgac tatctggcga ttgtgacgct cggcttcggc gaaatcgtcc gtatcctgtt
     2881 gctcaacaac actgaaatta ccggcggccc gaacggcatc agccagatcc ccaaaccgac
     2941 gctgtttggt ctggagttta gccgcaacac ccgagaaggc ggctgggata ccttcagcaa
     3001 tttctttggc gtgaagtacg acccatccga ccgggtcatt ttcctctatc tggtggccct
     3061 gttgctggtg gtcctgtcgc tgtttgtcat taaccgcctg ctgcgtatgc cgctgggccg
     3121 ggcgtgggaa gcgttgcgtg aagatgagat cgcctgtcgc tcattaggtt taagcccgac
     3181 gcgcatcaag ctgaccgctt ttactatcag cgccgcgttt gccggtttcg ccgggacgtt
     3241 gtttgccgcc cgccagggct ttgtcagccc ggaatccttc actttcgccg aatccgcctt
     3301 cgtgctggcg attgtggtgc tgggcggaat gggctcgcag tttgcggtga tcctggcggc
     3361 ggttctgttg gtggtgtcgc gcgagttgat gcgcgatttc aacgaataca gcatgttgat
     3421 gctcggcggt ttaatggtgt tgatgatgat ctggcgcccg cagggattgc tgccgatgac
     3481 gcgtccgcag ttgaagctga aaagtggtca ggcgaaagga gagcaggcat gagtcagcca
     3541 ttattagcgg ttaacggcct gatgatgcgc tttggcggtt tgctggcggt caacaatgta
     3601 tcgctggaat tgcgtgagcg ggaaattgtg tcgctgattg gccctaacgg cgcgggtaaa
     3661 acgacggtgt ttaactgcct gaccggtttt tataagccga caggcggtac gatcacgttg
     3721 cgcgagcggc atctggaagg attgccgggc cagcagatcg cccgcatggg cgtggtacgc
     3781 actttccagc atgtgcgcct gtttcgcgaa atgacggtga ttgaaaacct gctggtggcg
     3841 cagcaccagc aactgaaaac gggcctcttt tccggcctgt tgaaaacgcc cgctttccgc
     3901 cgcgcgcaaa gtgaagcgct ggaccgcgcg gcgacctggc ttgagcgtat tggcctgctg
     3961 gaacatgcca accgccaggc cagtaatctg gcctacggcg accagcgccg gctggagatt
     4021 gcccgctgca tggtgacgca gccagaaatt ctgatgctcg acgaaccggc ggccggcctt
     4081 aacccgaaag agaccaaaga gctggatgag ctgattgccg aactacgtaa ccatcacaac
     4141 accactatct tgctgattga acacgatatg aagctggtga tgggcatttc cgatcgcatt
     4201 tacgtggtga accagggcac gccgctggcg aacggcacgc cggaagagat ccgcaacaac
     4261 ccggacgtca tccgcgctta tctgggtgag gcataagatg gaaaaaacga tgttaacgtt
     4321 tgaaaaagtc agcgcccact acggcaagat tcaggcgctg cacgacgtca gtctgcacat
     4381 caaccagggg gaaatcgtta ccctgattgg cgctaacggc gcggggaaaa cgacgctgct
     4441 tggcaccttg tgcggcgatc cgcgcgcctc cagcggacgg gtggtgtttg acggtaaaga
     4501 catcaccgac tggcagacgg cgaaaatcat gcgtgaagcg gtggcgatag tgccggaagg
     4561 gcggcgcgtc ttctcgcgga tgacggtgga agagaacctg gcgatgggcg gtttttttgc
     4621 cgagcgcgat cggtttcagg agcgtatcaa atgggtgtac gagctgtttc cgcgcctgca
     4681 tgaacgccgt atccagcgag cgggcaccat gtccggcggc gaacagcaga tgctggcgat
     4741 tggtcgcgcg ctgatgagcc agccgcgcct gttgctgctg gatgaaccgt cgctggggct
     4801 ggcgccgatc atcatccagc agatcttcga caccattgag cagttgcgcg agcagggtat
     4861 gaccatcttc cttgtcgagc aaaacgctaa ccaggcgctg aagctcgccg accgcggtta
     4921 tgtgctggaa aacggccacg tggtgctatc cgataccggt gatgcgctgc tggcgaacga
     4981 agcggtgcgc agcgcctatc tgggcggata aggcgcagtt tacagctgcc atctggcaaa
     5041 cgcgcccggt ggcgctaccg cttaccggac ctggcggatt actcggcatt cggcaaatca
     5101 gtagaacatt tttcgtacca atatgttata gttgagaata gttatcaact ataaccaccg
     5161 aagaaggagc aaggatgata cgttcaggcg cctgcataat gggaacgctg ttgttcgcgg
     5221 cttcgttcag tgttaacgcc ttaacctcaa acgattttga tccccgcgat cctgctatct
     5281 ggcaagaaga aaccgcaacg ccttatccac tggccgcaac gacctgcgaa gtgcgtcatc
     5341 atccggattg tgcaacgtgg gaggatgaaa aatccgacat tcagcgtgaa cgcgagcggc
     5401 gagatcagcg gcgcttacaa aatctgtaca aaaagtattc tcatcgtgat taactgctga
     5461 cgccagccaa ataacgcatg tctggtcagc attacgctgt cagacgtgcc gtagctccca
     5521 cttttctttt ccggcgcttt cactgccttg ccatctctct gtcgccttac tatctttttt
     5581 tgtaataaaa aagttatttt tctgtcattc gagcatgtca tgttaccccc gcgaacataa
     5641 aacgcgtgat atcgcgcatc ccggcacaaa aagagagata accgatgata tcgttacgac
     5701 atacagcttt aggactggcg ctgagtctgg catttacggg tcaggcgttg gccgtcacca
     5761 ctattccatt ctggcattca atggaagggg agttaggcaa agaagttgat tcactggcgc
     5821 aacgtttcaa ccaggccaat ccggattaca aaatcgttcc ggtctataag gggaactatg
     5881 aacagaacct gagcgccggg atcgcggcat tccgtaccgg caacgcgccg gcaatattgc
     5941 aggtttatga ggttgggaca gcgaccatga tggcctcgaa agccattaag ccggtttatg
     6001 aagtgtttaa agacgccggt attaactttg acgagtccca gtttgtacca accgttgcag
     6061 gctactacac cgatgctaaa agcgggcatc tgctctccca gccctttaac agctccacgc
     6121 cggtactgta ctacaacaaa gacgccttta agaaagccgg tttagatccg gagcagccgc
     6181 cgaaaacttg gcaggagctg gctgactata ccgcgaaatt gagagcggca ggcatgaaat
     6241 gcggttacgc cagcggctgg caaggctgga tccaactgga aaacttcagc gcctggaacg
     6301 gtctcccctt cgccagtaaa aacaatggct ttgacggtac agatgcggtg ctggagttta
     6361 ataagccaga gcaggtgaaa catatcgcgc tgctggaaga gatgaataag aaaggcgatt
     6421 ttagctatgt tgggcgtaag gacgagtcta ccgagaagtt ttataacggt gactgcgcga
     6481 tgacaaccgc gtcctccggc tcgctcgcca atatccgcca gtatgccaaa tttaactatg
     6541 gcgtgggtat gatgccgtat gacgctgata tcaagggcgc gccgcaaaac gccattatcg
     6601 gcggagccag cctatgggtc atgcagggta aagataaaga aacctatacc ggcgtcgcca
     6661 aattcctcga cttcctggca aaaccggaaa acgctgctga atggcatcaa aaaaccggct
     6721 acctgccgat taccaccgcc gcctacgagc tgacccgaga gcagggttat tacgataaaa
     6781 accccggtgc ggatatcgcc actcgccaga tgttgaataa gccgccgtta cccttcacca
     6841 aaggcttgcg tctgggcaat atgccgcaga ttcgtaccat cgtggacgaa gagctggaaa
     6901 gcgtctggac cgggaagaaa accccacaac aggcgttgga taccgcggtg gatcgcggga
     6961 atcagttact gcgtcgtttt gagaaagcga gcaaatctta agtgtataag tgcctgatgg
     7021 cgctgcgctt atcaggccta cagcgtttgt aggccggata aggtgcttgc accgccatcc
     7081 ggcaccttcc aggaaaagaa ccttcatgtc atcatcccgt ccggtgttcc gctcgcgctg
     7141 gctgccgtat ttactggttg ctccgcagtt ggttatcacc gttattttct ttatctggcc
     7201 tgcgggcgaa gcgctgtggt attcgctgca aagcgtcgat ccgtttggtt tttccagcca
     7261 atttgtcggg ctggagaatt tcgtcgcgct ttttcacgac agttattatc tcgacgcctt
     7321 ctggacgacg attaaattca gcgcgctggt cacgtttagc ggcctgctgg tctcattgtt
     7381 tttcgccgcc ctggtggatt acgtggtgcg cggcagccgt ttttatcaga cgctgatgct
     7441 gctgccttat gccgtcgcgc ccgccgtcgc cgccgtattg tggattttcc tgtttaaccc
     7501 ggggcgggga ttaatcaccc atttcctcgg cgaattcggc tatgactgga accacgcgca
     7561 aaacagcggt caggcgatgt tcctggtggt atttgcgtca gtctggaagc agattagtta
     7621 caacttttta ttcttctttg ccgcgctgca atctattccc cgctcgctgg tggaagcggc
     7681 ggccattgac ggcgccgggc cgattcgtcg tttcttccgg ctttctttgc cgcttattgc
     7741 gccggtcagt ttcttcctgc tggtggtcaa cctggtgtat gcctttttcg acaccttccc
     7801 ggtgattgac gccgcgaccg ccggcgggcc ggtacaagcc accacgacgc tgatttataa
     7861 gatttattgc gaagggttta ccggcctgga tctctcggcg tccgccgcgc agtcggtggt
     7921 gttgatgttc ctcgtcatca ttctgacggt ggtgcagttc cgctatgtgg aaagtaaggt
     7981 gcgttaccaa tgatagagaa tcgtcgcggg ctgacaatat tcagccatac catgctgatt
     8041 ctggggatcg cggtcatttt gtttccgctg tatgtcgcgt ttgtcgcggc gacgctggac
     8101 gaccgcgcgg tgtttgagac gccgatgacg ctgcttcccg gcacgcagtt actggagaat
     8161 atcaaaacta tttgggtcaa cggcgtcggt gttaatagcg cgccattctg gctgatgatg
     8221 cttaacagtt tcattatggc gttcagcatt acggtaggca aaatcacggt atctatgctt
     8281 tccgcattcg ccatcgtctg gtttcgtttt cccctgcgta acctgttctt ctggatgatt
     8341 tttatcaccc tgatgttgcc ggttgaagtg cgtatcttcc cgacggtgga agtgatcgcc
     8401 aacctgaaaa tgctcaacag ctatgccggt ctgacgttac cgctgatggc gtccgctacc
     8461 gccactttcc tgtttcgtca attcttcatg acgcttccgg atgaactggt ggaggcggcc
     8521 cgtattgacg gcgcgtcgcc gatgcgcttt ttccgcgaca tcgtgttgcc gctgtcaaaa
     8581 accaacctgg cggcgttatt cgtcatcacc tttatctacg gctggaacca gtatctgtgg
     8641 ccgctgttga ttatcaccga cgtgaatctt ggcactgccg tagcgggtat caaagggatg
     8701 atcgccactg gcgaaggtac cacgcaatgg aaccaggtga tggcggcaat gctgctgact
     8761 ctgattcccc cggtcgtaat tgtgttagcc atgcaacggg cgtttgtgcg tggtttagtg
     8821 gacagtgaga aataaaaatg gctggtttaa aactacaggc agtaaccaaa agctggggcg
     8881 gcaaaaccca ggtcattcaa ccgctgacgc tggacgtggc ggatggcgaa tttatcgtga
     8941 tggtcgggcc gtccggctgc ggcaaatcaa cgttgttgcg gatggtggcc ggtctggaac
     9001 gcgtgaccag cggcgatatc tggattgatc gcaaacgggt caccgagatg gagcccaaag
     9061 atcgcggcat cgcgatggta tttcagaact atgctctcta tccccatatg agcgtagagg
     9121 agaacatggc gtgggggctg aaaattcgcg gtatgagcaa agcgcatatt gaagaacgcg
     9181 tgcgggaggc ggcgcgcatt ctggagctgg acggcctgct taaacgccgt ccacgcgagc
     9241 tttccggcgg tcaacggcag cgcgtggcaa tggggcgcgc gatcgtccgc gagccggcag
     9301 tctttttatt cgacgaaccg ctctctaacc tcgacgccaa gctgcgcgtg cagatgcgtc
     9361 tggagttaca acatctgcat cgtcgccttc gtaccacctc gctctatgtt actcacgatc
     9421 aggtagaggc gatgacgctg gcccagcggg tgatggtgat gaataaaggc gtcgcagaac
     9481 agattggcac gccggtagag gtgtatgaaa aaccggccag tcgcttcgtg gcgagcttta
     9541 ttggcagccc ggcgatgaat ctgttggacg gcgttatcag cgcttccggc gaccgtttcg
     9601 aattgcctgg cggtctggcg ttgccgattg gtgcgggcta tcggggtcat gctggacgta
     9661 aaatgacgct gggtatccgc ccggagcata ttgcgttaag ctcgcaggcg gaaggcggcg
     9721 tgccgttaac ggtagacacg ctggagattc tgggcgcgga taatctggcg catgggcgct
     9781 ggggcgatca gaaactggtg gtgcggttgg cgcatcagca gcgcccggcg gcgggcagta
     9841 cgctatggct gcgtctgccg gaacatcagc gacatctttt tgatggcgaa acaggacaac
     9901 gtgtatgagt aactggcctt atcctcacat tgtcgcccat cgcggcggcg gtaaactggc
     9961 gccggaaaac actctggcgg cgattgacgt gggcgcgcga tacgggcaca ccatgattga
    10021 gtttgatgcc aagctgtcga aagacggcga aattttcctg ctgcatgacg ataacctgga
    10081 gcgcaccagc aatggttggg gtgtggcggg cgagttgaac tggcaggatt tattgcgtgt
    10141 ggacgctggc ggttggttta gcggcgaatt taaaggcgag ccgctgccgt tgctctcgca
    10201 ggtggcggag cgctgccgta aacacggcat gatggcgaat attgagatca aaccgacaac
    10261 ggggagcgga aggctaacag gacgtgtcgt ggcgttggcc gcccgcgaac tgtgggccgg
    10321 gatgacgccg ccgctgcttt cttcctttga gatagaggcg ctggaagcgg cgcaggcggc
    10381 agtacctgaa ctgccgcgcg ggttactact ggataaatgg cgtgaagact ggcgtgaact
    10441 gacgacccgt ctgggctgtg tttccctcca tctcaaccat aaattactcg atgagacgcg
    10501 agtgcaagag attaaggccg cgggtctgcg gattctggtg tataccgtca atcagcccca
    10561 gcgggcggca gagctgctgc gctggggcgt ggattgtatc tgcaccgatc gcattgatga
    10621 catcggccct cactttcagt tttaagggct gatagttttc agcgggatgt caggctgcgg
    10681 cgtcccgctg tcctgctgca acattggctg ggaatggttt agcatccggt ccggatttcc
    10741 gctgccgctg agcattccgc cctgcgtatt gggcagcgtt tgctgaccga gcataccgtt
    10801 gcccggctgt ccctgctgaa cccgctgcgt attggcattc aactgcgact gtagattttg
    10861 ctgctggctg cgcgcctgcg tttgcatctg cgtctgcata cgctgctggc tggggatttg
    10921 ataacctggc tgattaggat tattcatagt gttaattggc tgggccaata cagcaaaggg
    10981 taataaagcc gtaataagta gtaagcgttt cattgtcgtc tcctcccgat gaggcctctt
    11041 tttaagtgta cctctatttc gccatgatga tgatttttta agcgttgtgg accaggatta
    11101 aacgggacat acaccccttt atctggagaa aaacaacgat gaaaccaacg tttatgcgct
    11161 gggtggcgat cgccgctctg ctggccgggg ggacgtttag cgcggtggcc aatcctcccg
    11221 tcgcgccgcc agtctcctat ggtgttgaag aagatgtctt tcatcctgta cgggcgacgc
    11281 aagggatggt ggcgtccgtg gatgcaatgg cgacgcaggt tggcgtggat atcttaaagc
    11341 agggcggtaa tgccgtggat gccgccgtcg ccgtgggcta tgcgctggct gtcacgcatc
    11401 cgcaagccgg gaatctgggc ggcgggggat ttatgctgct gcgcactaaa gatggcgcta
    11461 ccacggcgat cgattttcgt gaaatggcgc cggctgccgc gacccgtgat atgttcctcg
    11521 acgatcaggg taacgccgat gcgaaaaagt cgctgacgtc gcatctggca tccggtacgc
    11581 cgggtaccgt ggcgggtttc tcgctggcgc tggagaaata cggcacgatg ccgctgaata
    11641 aagtggtgcg tccggcgatg aagctggcgg aagagggttt tgtggttaac gatgcgctgg
    11701 ccgacgactt aaaaacttac ggcagcgaag tgatccccaa ccatgagaac agcaaagcca
    11761 ttttctggaa agacggcgag ccgctgaaaa aaggcgataa gctgatccag aagaatctgg
    11821 cgaaaagcct ggaaatgatt gccgaaaacg gcccggctgc gttttataaa ggggcgattg
    11881 ccgaccagat tgccggggaa atgcagaaga acggcggtct gatgaccaaa gaggatttag
    11941 ccagctataa agccgttgag cgtacgccaa tcagcggtga ctatcgcggg tatcaggttt
    12001 tctccatgcc gccgccgtcc tcgggcggta ttcacatcgt gcaaatcctc aatattcttg
    12061 aaaatttcga catgaagaag tacggctttg gcagcgccga tgccatgcaa atcatggcgg
    12121 aagcggaaaa atacgcctac gctgaccgct cagagtatct gggcgatccg gactttgtga
    12181 aagtgccgtg gcaggcgctg accaacaaag cctatgcgaa aacgttggcc gatcaaatag
    12241 atattaataa ggcaaaacct tccagccaga tcaaaccggg caagctcgcc ccgtatgaaa
    12301 gcaaccagac cacccacttc tcggtggtgg ataaagacgg caatgctgtg gcggtgacct
    12361 ataccctgaa caccaccttc ggcacaggaa ttgtggcggg aaataccggt attctgctga
    12421 ataatcaaat ggatgatttt tctgctaagc ctggtgtacc caatgtttat ggcctagtgg
    12481 gcggcgatgc taacgcggtc gaaccaaaaa aacgtccgct gtcgtcgatg tcgccgacta
    12541 tcgtggtaaa agacggcaaa acctggctgg tgaccggtag ccctggcggg agtcgaatca
    12601 tcactactgt gctgcaaatg gtagtgaaca gcattgattt tggcatgaac gtcgccgaag
    12661 cgaccaacgc gccgcgtttc catcatcaat ggttgccgga cgaactgcgg gtagaaaagg
    12721 gcttcagccc cgatacgctg aagttgctgg aacagaaagg gcagaaagtc gcgctgaaag
    12781 aagcgatggg cagcacccaa agtattatgg ttggaccgga tggcgaactg tacggtgcgt
    12841 ctgacccgcg ttccgtggat gatttaacgg cgggatactg atttttaatt ccaggcccgg
    12901 tgtcagacac cgggctattt gcagattatg ccgtgagtaa tcgggctgga ttatcaatac
    12961 aaagcttgcg cagagtatcg ttgtctactc cgcgagcagc caaataggcg aggaaaacat
    13021 tcgggacaaa cccccagcca tttccgccat ttttcgccca catctgtttg agaaaaacat
    13081 catggcttaa aacgatttgg tcggcgtaac ccagtgcaat cagattcgct actgcatctg
    13141 cggtctcctg aacgcccggc gcgacacctt cttttggaaa ggtgatgtcc agaccaatca
    13201 tgtcaaattc aagccatacg ccgcggtcga gcattttacg ttgatagacg acatcttttc
    13261 ctgaagggtc cgaatgcgcc agcgagactt ttgccggaga gacgttcatt tcttccagca
    13321 cgatatccag cacctcatca cccagtcgca gccaccctgg catatggata ttcatcgccg
    13381 tgtgggggtt gttacattgt gccagagacg ctgcccgcag gctgttacgc tccgcttggg
    13441 taaacgcggg agatacgccg atttcaccga tcatgccagc gcgaatatcc gtctcgccaa
    13501 taccctgatt cagttcttta tcaatgagtg aggctaacag ctcaacaggt ttatggatcc
    13561 gggtgctttc aaatttctcc agataaggcc cggatgacgc aacgatattc aaacccgttt
    13621 ttaaggcaac ttctcgtagc gctgaggcat cccgtccaat ggattctgaa ccggtggcgt
    13681 cgacaatcgt cctgccgccc aaagacataa agttattgat ttcgaagata acatcatcaa
    13741 tctcttttct gtccatgtta tcggcgcagc agtatgggtc gtgtttcagc ccccactgca
    13801 ggtcagcact gactttcttt cccaccagtt gctgtgaaaa agcataatgt ggctcgtcta
    13861 cgaccgaaga cagatcgtta aacagatgtt catgcggtag cgtcagcccc atatccgtat
    13921 gcgccaccgg gcctgttacg gtttgcagga aacctttcat tctgacacct ccattttttg
    13981 cgccattttg gatgctctgt attcagggat ggtggtcaca atcgcaccga ctaacgcgaa
    14041 cagcgtaccg atgatggtga ccaggtagac cgtattgcct aatgaaggga tcaattcatc
    14101 aattagcact gagccaagca gttggcctgc tgttgacgct acgcccagca tcaatagccc
    14161 taagcctctc accagaatcg ccattagccc gatggatagc agacccagcg gaccaccgag
    14221 atacatccac catgtatcgg gtaactggat ggtgacatgg cctaatgcga tacgtatcgc
    14281 cagcgccgcg cccaggacac aaaagccgac gatgaagttc catgtaatgg acaccagcat
    14341 ggagcccgtt gcctcggcga ctttcgcatt ccccgcaggc tgccagccag cgagtaaccc
    14401 tgccaaaaag gggaggatag cgagcaggat aaacgaggtt gagtgccact gtggcgacac
    14461 gacaaaaatg gtggcgataa cggcgaacaa tgcgccagta atgcgccatg gcgtaaaata
    14521 ttttttctcc tccacgccga tgccaaaacg gtcgcacagc aggccggaaa gaagcagagc
    14581 ggaaattaat gccgtttgaa aggtggcaac gcccagcgcg ctggcggatg cgccttcaga
    14641 aaatacgacc atcgccccgc ataatcctgc aaaccaattc catagcggga tttttctctt
    14701 tttaatcaga gtagggattg aggcgaattg ctggcgtgtt tctttgcgcg caataataat
    14761 aaaaaacatg acgaccagac cgctggcaaa cgagattact gcgcaagcat taccgtcttg
    14821 taaccaatgt cctaactgcc cattaacggc agactgcatc ggggaaagca taccggctaa
    14881 gatggtggca agcatcagta agggggttga gtacttattc ttgttcatac atcaatcctt
    14941 atattttata aaaggagtaa ctttcgttac tccattgttt tttattttct ggcgatgaat
    15001 tgaagcgtgt tgacccacag gtcggtataa aatggccatg acataaactg ctgggttccc
    15061 cagtgtgggg agcagtcact cataaagcag gcggttttac cctgttggta ttcaccgaac
    15121 actaacaatg ggtcattatt tattgttaat acgacatcgg catcgtctct ggcgacgacc
    15181 tggttatatc caagaaatac cgggtaatct gagaacccgt taacaacagg atgttcaggt
    15241 gagacagcct cagcacaaat accctctggc ttttctaccc ggtcatcgcc gtcaagcata
    15301 ataactggca gaacctcagc aagaacggtg ttcttataat tggcttttgc ctcaataccc
    15361 ataaatgaca gataaccgcc aatcatgagt agtccaccgc catttttgac gtactcttta
    15421 atggattcca gagcgtttgg ttttattttt agctgataga aggtttcatt ttgtagcagg
    15481 aaggtattac taccaatgtc gctaataaca atcacatcat aacgatttaa ttcgtcaata
    15541 ctctctggaa aggcaatttg taccgtgtgg gcaggcatgt aatcaatatc aacgccgcct
    15601 ttcctcaggc attccagtaa ccatgtcgcg ccttcttcat atttactgga ggtgaaactg
    15661 tcataacctt ttgaatgaat catatgaata tgccaggatt ctccaataaa gagcaccttt
    15721 agttttttct gcgtattgtt catagtctgc tccttgattt agtgagtaga gatagtttgt
    15781 ttgtaatgtg aaccctgaat acgatgaaga acggagtcgt tttccggcat atcagaggca
    15841 ttaggcgttt caaccgcaag tgaggcaaat gcgctggcgt agcacaatgc ggatgccagt
    15901 gactttcctt ttgcaaggcc agatgagagg gcgccattga aagcgtcacc cgctcccgcc
    15961 gtatttttta caactgccgg aaatgccggg gaatagatga attgtgtgcc gtcataagca
    16021 agcgaacctt tgctacctaa tgtaataatg gtatttttga cgcctttctg gtgaataatt
    16081 ttggccgcgc atttggctga ttcgatatca ttaaccgcca tattggccag caggccggct
    16141 tccgtttcat ttggcgtaat atagtcaatg ttatcaatga tggtgttaac catgtcattg
    16201 tacggcgctg gattgatgat gaccggtatg tcattttttt gtgcgagacg aattgtttgc
    16261 tgcagcgctt cgtaattcgt ctccagttgg acaagaacaa tatctgaatg aacaatggct
    16321 tctttttgaa tggtgatttc atcaggggaa attgtcatgt tggcgccagg gtagatagcg
    16381 atgacattat ctccggtatc accattcacc atgatggttg ctgtacctgt ttgtgtttct
    16441 ttggtctggt agataacact tttatggatt tttgatgagt ttataaaatt aatggcgtaa
    16501 tcgctaaaat gatctgagcc gactttagta ataaaatgca catcagaatc ggcatagctt
    16561 gctgctaatg cctgattaca tcccttaccg ccgggtgaaa aaataaattt atcggccagc
    16621 aatgattctc ccgttgaggg taatctcggt agataactga taatatcaac attgaacgag
    16681 ccaataacac atacattatt tttcatggca gagagacctt tttttatttt ctgcgctgat
    16741 tcatattttt ccagcacata agcaatttca ttttttgcga cgttatcaag agaatcaagg
    16801 gtaataaatg caccaccatg acagcgagta agatatccct gtccggcaag ttcattgaga
    16861 tctgaacgaa tagtttcctt tgttaccttg agacttttcg ccagatttga aacttttaca
    16921 actcccgaaa tactgagttc cttcaatatt ctatgatggc gttcaaattt cattttttac
    16981 ctcaccgtgg ttaaattagt cccgggagga gtatattgtt gtgattgtca ccataaagtg
    17041 atggcagaaa ccaaaaaaaa acaaaaatgt aatattaata ttgctaaaat tacggaaaaa
    17101 acggtgataa agcttaaagt ggtaataacc atgaaattca agtggttatt gttttgatat
    17161 aggggaagta ggctgcaata actggaatgt tgtgaaggtt tgtgacgttt cgccccacag
    17221 ggtggggcgg ggaagcgcta tttcacgcgc gccataaagt acgtatcaac gtactcaccg
    17281 ttgcgcaggc cgtatttctt accggtgcct tcgatttcaa agccgtactt cttatacacc
    17341 gccaccgcgg gctcgttatc aacaaacacc gttaactcaa tacgctcgac gcgcagccag
    17401 ttgtcacaca tgtcgatcat cgtgcggatc agcgcgctgg caatgccgcg attgtgccac
    17461 cgggcatcca cgcagatacc aaaatcggcc acgtggctgc gacggggacg ttgggtgacc
    17521 tgaatagaaa gatggccaac gacaatatcg tcaatgcagg caaccagttg tttaaccccg
    17581 gcttgctcgg ttagccgcgc ctgccacatt tcgagggaag gatgaggaac ctgtagcgtg
    17641 ttgtggtaca cctccggctg ggcgtggatc tgacgaatgg cgtcgtaatc tttcggttca
    17701 gcgtggcgta tcactatttc actcattcct tatctcctgc agggttaatt gtgtatttac
    17761 actcgctgag aaagaaaatt ccgtcaaccg catttttttg caaaaagaag tagacaagtg
    17821 cgaatgagaa tgattattat tgccttgcat tcaggggaac ccctacggat aacctgaaag
    17881 catgacattg ctcacattgc ttccagtttt attttggcca gcttttgctg gctttttttt
    17941 tggttttgtt tcagcctggc ttacttgtca ttttgtcccc gggaagtgct cgtgctcctc
    18001 acgtacattt agtacgctcc gggccctgcg cgcttgccgt gaacaaactg accgcgacgc
    18061 tgacggccga tcttgaggca tctgcttttg taggcccgaa aaggcttctc cgccaccgtc
    18121 aaagaatcca acattcagtc tcctcacgct ttgcgctatg gtgtaaacaa tcatcttcaa
    18181 aaggatcgtc tcatgacctt acactgcgca tttattggat tcggcaaaag taccacccgt
    18241 taccatctcc cctacgttct gaatcgtaaa gatacctggc atgtcgcgca tattttccgt
    18301 cgtcacgcta aaccggaaga gcaggcgccg cagtattcgc atattcactt caccagcgat
    18361 ctggatgagg tgttgggcga tccgcaggta aaactggtga tcgtctgtac gcatgctgac
    18421 agccatttcg aatacgccaa acgcgcgctg gaagcgggta aaaatgtgct ggttgagaaa
    18481 cctttcacgc cgacgctggc ggaggcaaaa gtgttgttcg aactggcgcg aagcaaagga
    18541 ctgaccgtca cgccatatca gaatcggcgt tttgattcct gttttctcac tgctaaaaaa
    18601 gcgattgaga gcgggaaact gggcaagatt gtcgaaattg aaagccattt cgattattac
    18661 cgcccggtag cagaaaccaa accgggcctg ccgcaggatg gcgcattcta tggacttggc
    18721 gtccacacta tggatcaaat tatttcgcta tttggccgcc cggatcatgt cgcgtatgac
    18781 attcgtagcc tgcgtaataa agcgaatccg gatgacacct ttgaagcgca attgttctac
    18841 ggtgccctga aagccattgt gaaaaccagc catctggtga aaatcgacta tccgaagttt
    18901 attgttcacg gcaccaaagg ttcgtttgtg aaatacggta tcgatcaaca agaaaccagc
    18961 ctgaaagcga acattatgcc tggcgagccg ggttttgccg ctgacgaatc cgtcggtgtg
    19021 ctggaatatg ttaacgatga aggcgttacg gtgaaagaag aggtgaaacc ggaaacgggt
    19081 gactatggtc gcgtctatga tgcgctgtac cagacgttga ccatcggtac gcctaattat
    19141 gtcaaggaat ctgaagttct taccaatctg gaaatcctcg aacgtgcctt cgaacaggca
    19201 acgcctgcga cgataaccct cgctaaatag cccttacaga ctcctctgcg cttattcata
    19261 ttttttgaac agaggagtca attttcaccc tctatgatcc cggacggaat gagtccacac
    19321 ttattccatc gaaaacatct gggggtgaac acaatgatct acttacgcaa agcaaacgac
    19381 cgcggtcatg cgaatcatgg ctggcttgac tcctggcata ccttttcttt tgccgattat
    19441 tacgatccga actttatggg gttctcggcg ctacgtgtga ttaacgacga tgtgatcgac
    19501 gcaggccagg gtttcggcac gcatccgcat aaagacatgg aaattttgac ctatgtgctg
    19561 gaaggtgctg tagaacacca ggacagtatg ggcaataaag aacaggttcc ggcaggtgaa
    19621 ttccagatta tgagcgccgg gaccggcgtt cgccactccg agtacaaccc gagcaaaacg
    19681 gatcgtctgc ggctgtacca gatctggatc attccgcaag aaacaggcat cacgccgcgc
    19741 tacgaacagc gccgcttcga cgccgcgcag ggcaagcaac tggtgctttc gccagatgct
    19801 cgcgatggtt cgctgaaggt ccaccaggat atggagctgt accgctgggc gctgctcaaa
    19861 gatgagcaat cggtgcatca gattgccgcc gagcgccgcg tctggataca ggtggtaaaa
    19921 ggtaacgtga ccattaacgg taccaaagcg acgaccagcg acggcctggc gatttgggat
    19981 gagcaggcaa tctcgattca tgccgacagc gacagtgaag tgttactgtt tgacctgccg
    20041 ccagtctaaa aatacacgtc atccttcaag ctgcatctgt gttggcttta ttactcggcc
    20101 catccatagg cctcgcccct tcggggccgc tgcgagcagc gttcaaatct gctcccggca
    20161 gatttgtcgc tcaccccggt cgcgtactta atgtacgctc ccggggattt actgagggac
    20221 atccttgtcc ctcaccagag gcaaccttcg gttgttcaaa ttcgttcctg acgaatttgt
    20281 cactgcgtcg ccgccttgat gcaactcgaa tgattttgtg tatttctcat aataaaaact
    20341 cctttttctc tgcgaaggtt cacgcacgtc cgtggtaaac tggggaaatc tatccctttt
    20401 taacgcttca ggacgatgaa aaagaaaaga cccgtacttc aggatgtagc cgaccgcgtg
    20461 ggcgtgacca aaatgacggt cagccgcttt ttgcgtaacc cggagcaggt ctccgtggcg
    20521 ctgcggggca aaattgccgc tgcacttgat gagctgggtt atattcccaa tcgcgctcct
    20581 gatatccttt ctaacgccac cagtcgcgct atcggcgtgc tgttaccgtc tctcaccaac
    20641 caggtctttg cggaagtgtt acgcggcatt gaggccgtca ccgatgccca cgggtatcag
    20701 accatgctgg cgcactacgg ctataaaccg gagatggagc aggagcgcct ggaatcgatg
    20761 ctctcctgga atatcgacgg tcttatcctc acagaacgta cccatacgcc gcgcacctta
    20821 aaaatgatcg aagtcgccgg gattccggtg gtggaactga tggacagcca gtcgccgtgt
    20881 ctcgatattg ccgttggttt tgacaacttc gaggccgccc gtcagatgac cgccgcgatt
    20941 atcgcgcgtg gtcatcgtca tatcgcctat ctgggggcgc gcctcgacga acgtactatc
    21001 atcaagcaga agggctatga acaggcgatg cgggacgccg gcctggttcc ttacagtgtg
    21061 atgatggagc aatcttcatc ctactcttcc ggtatcgaac tcatgcgcca ggcgcgacgc
    21121 gaatacccac agcttgacgg tattttttgc accaacgatg acctggcggt gggggcggcc
    21181 ttcgaatgcc agcgcctggg gctaaaaatc ccggacgaca tggcgatcgc cgggttccac
    21241 ggtcatgaca tcggccaggt gatggaaccg cgtctggcaa gcgtcctgac gccgcgcgag
    21301 cgaatgggca gcattggcgc ggaacgtctg ttggcccgca ttcgcggcga aacggtcacg
    21361 ccgaaaatgt tagatttagg tttcaccttg tcaccgggcg gatctattta gtctgacaac
    21421 tttgaagtag ctcacactta ttcacttttg gcacgaatgg tcattgcgtc gtgaatggtg
    21481 cggttggaca atgttaccga taacagttac ccgtaacaaa ttttgcaact tgtagagtgg
    21541 ggtcccgctt tgagcacgac taatcatgat caccacgttt acgttctgat gggcgtatca
    21601 ggcagcggta aatccgctgt cgcaagcgcc gtggcgcatc agcttcatgc cgcgtttctg
    21661 gacggcgatt ttctgcatcc gcgctgcaat attgaaaaaa tggcttccgg cgagccgttg
    21721 aatgatgatg accgcaaacc gtggttgcag gcgctgaacg acgccgcttt cgcgatgcag
    21781 cgtaccaata aaatctcgct gattgtctgt tccgcactga aaaaacacta tcgcgacctg
    21841 ctgcgcgagg gaaacccgaa tctctccttt atctatctga aaggtgattt cgacgtcatt
    21901 gaaagccgtc tgaaagcgcg caaaggtcat ttcttcaaaa cccagatgct ggtgacgcag
    21961 tttgaaacgc tgcaagagcc gggtgccgac gaacgcgatg ttctggtggt ggatatcgac
    22021 cagccgctgg aaggcgttgt ggcgagcacc attgaggtca tcaataaagg cagtacgctg
    22081 tgagtacatt aacactggtt ttaaccgccg tcggttccgt cttactgctg ctgtttctcg
    22141 tgatgaaggc gcgtatgcac gccttcgtcg cgttaatggt cgtctcaatg ggcgcggggc
    22201 ttttttcagg gatgccgctt gataaaatcg ccgcgaccat ggaaaaaggg atgggcggca
    22261 cgctgggctt cctggcgatt gtggtcgcgc tgggggcgat gttcggtaaa attctgcatg
    22321 aaaccggcgc ggtcgatcag atagccgtga aaatgcttaa atcctttggc cataaccgcg
    22381 cgcactatgc gattggcctt gccgggctga tttgcgcgct cccgctattc tttgaagtgg
    22441 cgattgtgct gctgataagt gtggcgttct ctatggcgcg tcataccggc acaaacctgg
    22501 tgaagctggt cattccgctg tttgcgggcg tggcggcagc cgcggcgttt ttgttgcctg
    22561 ggcctgcgcc gatgctgctg gcttcccaga tgcatgctga tttcggctgg atgatcctga
    22621 ttgggctgtg cgccgccatt cctggcatga ttatcgccgg gccgctgtgg gggaatttta
    22681 tcagccgtta cgttgagctg cgtattcctg acgacattac cgagccgcat ctgggcgaag
    22741 gcaaaatgcc ttctttcggc ttcagcctgt cgctgatcct gctgccgttg gtgctggtag
    22801 gactgaaaac gatcgccgcg cgctttgtgc cggaaggttc caccgcttat gaatggtttg
    22861 agtttatcgg ccaccccttc actgcgattc tggtcgcttg tctggtagcg atttacggcc
    22921 tggcgatgcg ccaggggatg ccgaaagaca aagtgatgga aatctgcggc cacgcgctac
    22981 aaccggcggg cattattctg ctggtgattg gcgcaggcgg ggtgttcaaa caggtactgg
    23041 ttgactccgg cgtcggcccg gcgctgggcg aagcgttaac cggtatggga ctgccgattg
    23101 ccattacctg ctttgtgctg gcggcggcgg tgcgcatcat tcagggttcc gcgaccgtgg
    23161 cgtgtttaac cgcggtcggt ctggtgatgc cggtcattga gcaactgaat ttctccggcg
    23221 cgcagatggc ggcgctctct atctgtatcg ccggcggttc aattgtggtt tctcatgtta
    23281 acgacgctgg cttctggctg ttcggtaaat ttaccggcgc gaccgaagcg cagacgctga
    23341 agacctggac gatgatggaa actatcctcg gcacggtcgg cgcgattgtc gggatgattg
    23401 ctttccaact gctgagctga gtcttgttgc ccggtggcgc tgtgcttacc gggcctggaa
    23461 acgggcacat atcgataccg taagccgggt aaggcgtaat cgctacccgg tttttttatt
    23521 gaggtgtgca tggcaatcgc ccaacgacat tttgcctcgc catgtttcag tacgcgcata
    23581 aaagcaggca aatttctacg ctgatccata attaggatca ataaaacagc gacggaaatg
    23641 attcccttcc taacgcaaat tccctgataa tcgccactgg actttctgct tgcgcggtaa
    23701 ggcaggataa gtcgcattac tgatggcttc gctatcattg attaatttca cttgcgactt
    23761 tggctgcttt ttgtatggtg aaggatgcgc cacaggatac tggcgcgcat acacagcaca
    23821 tctctttgca ggaaaaaacg ctatgaaaaa tgttggtttt atcggctggc gcggaatggt
    23881 cggctctgtt ctcatgcaac gcatggtaga ggagcgcgat ttcgacgcta ttcgccctgt
    23941 tttcttttct acctcccagt ttggacaggc ggcgcccacc ttcggcgaca cctccaccgg
    24001 cacgctacag gacgcttttg atctggatgc gctaaaagcg ctcgatatca tcgtgacctg
    24061 ccagggcggc gattatacca acgaaattta tccaaagctg cgcgaaagcg gatggcaggg
    24121 ttactggatt gacgcggctt ctacgctgcg catgaaagat gatgccatta ttattctcga
    24181 cccggtcaac caggacgtga ttaccgacgg actgaacaat ggcgtgaaga cctttgtggg
    24241 cggtaactgt accgttagcc tgatgttgat gtcgctgggc ggtctctttg cccataatct
    24301 cgttgactgg gtatccgtcg cgacctatca ggccgcctcc ggcggcggcg cgcgccatat
    24361 gcgcgagctg ttaacccaaa tggggcagtt gtatggccat gtcgccgatg aactggcgac
    24421 gccgtcttcc gcaattcttg atattgaacg caaagttacg gcattgaccc gcagcggcga
    24481 gctgccggtg gataactttg gcgtaccgct ggcgggaagc ctgatcccct ggatcgacaa
    24541 acagcttgat aacggccaaa gccgcgaaga gtggaaaggc caggcggaaa ccaacaagat
    24601 cctcaatact gcctctgtga tcccggttga tggtttgtgc gtgcgcgtcg gcgcgctgcg
    24661 ctgtcacagc caggcgttca ccattaagct gaaaaaagag gtatccattc cgacggtgga
    24721 agaactgctg gcggcacata atccgtgggc gaaagtggtg ccgaacgatc gtgatatcac
    24781 tatgcgcgaa ttaaccccgg cggcggtgac cggcacgttg actacgccgg ttggtcgtct
    24841 gcgtaagctg aacatggggc cagagttctt gtcggcgttt accgtaggcg accagttgtt
    24901 atggggcgcc gccgagccgc tgcgtcgaat gctgcgccag ttggcgtagt ggctattgca
    24961 gcgcttatcg ggcctgcgtg tggttctgta ggccggataa ggcgtgtcag cgccgccatc
    25021 cggcaatatc cgccagataa ggcgtagtcg gcaagcagac gtcagattga tatgtagggt
    25081 gcatcgtcac ctttttttgc gtaatacagg agtaaacgca gatgtttcat ttttatcagg
    25141 agttaagcag agcattggct attctttaag ggtagcttaa tcccacgggt attaagccta
    25201 acctgaaggt aggacgacgc agataggatg cacagtgtgc tgcgccgttc aggtcaaaga
    25261 agtgtcacta cctgatgttg aattcagtga gatggagtga cgccacaaaa caggataaca
    25321 aaccatgtcc agtcgtatcg atagagacgt gattaatgcg ctaattgcag gacattttgc
    25381 ggaccctttt tccgtactcg gaatgcacca gacccaagcc ggactagaag tccgcgccct
    25441 attacctgac gccaccgacg tatgggtgat tgaacccaaa accggacgta aagtcggcaa
    25501 actggaatgt ctcgacgctc gcggtttttt ctgcggcgtt ttaccccgac gtaaaaattt
    25561 ctttcgctat cagctcgccg tgacctggca cggacagcag aacctcatcg acgatcctta
    25621 ccgttttggt ccattaatac aggaaatgga tgcctggcta ttgtcggaag gcacccacct
    25681 gcgtccttat gaaacgctgg gcgcgcacgc cgatacgatg gatggcgtca ccggcacccg
    25741 tttctccgtc tgggcgccta atgcccgtcg cgtttcggtt gtcgggcaat tcaactattg
    25801 ggatgggcgt cgccacccga tgcgtctgcg caaagagagc ggtatttggg agctgtttat
    25861 ccccggcgcg cataatggac aactgtataa attcgagctg cttgatgcga acggtaatct
    25921 gcgcattaaa gccgatccct atgcttttga ggcgcagatg cgtccggaaa cggcgtcgat
    25981 gatttgcgga ctgccggaga aagtgacgcc aagcgaagaa cgacaaaaag ccaatcagtt
    26041 tgatgcgccg atctcgattt atgaggtgca tttaggttca tggcgccgcc atacggataa
    26101 caatttctgg ctgagctatc gtgagctggc ggatcagctt gtgccttacg ccaaatggat
    26161 gggctttacg caccttgaac tcttgccggt taacgaacat ccgtttgacg gcagttgggg
    26221 ctaccagccg accggcctct acgcgccgac ccgccgcttt ggtacgcggg acgacttccg
    26281 ctatttcatc aatgcggccc atgcggcggg ccttaacgtc attctcgact gggtgccggg
    26341 ccatttcccg tccgatgaat ttagcctcgc ggagtttgac ggcacccacc tctatgagca
    26401 tagcgacccg cgcgagggct atcaccagga ctggaatacg ctgatctaca actatggtcg
    26461 tcgtgaagtc agtaattatc tggtgggtaa cgccctgtac tggatggagc gttttgggat
    26521 tgatgcgctg cgtgtcgatg cggtggcctc tatgatctac cgcgactaca gccgcaaaga
    26581 gggcgagtgg ataccgaacg agttcggcgg tcgtgaaaac ctggaagcca ttgagtttct
    26641 gcgtaatacc aaccgcatta ttggcgagca ggtgcccggc gcggtcagca tggcggaaga
    26701 gtcgacagac ttctctggcg tgacgcgtcc accggaaacg ggtgggctgg ggttctggta
    26761 caagtggaat ctgggctgga tgcacgacac gctggactac atgaagctgg acccggtgta
    26821 ccgccagtat catcacgaca agctgacctt tggtatgttg tacaaccata ccgaaaactt
    26881 tgttctgccg ctgtcgcacg atgaggtggt tcacggcaag aaatccattc tcgatcgtat
    26941 gccgggcgat gcgtggcaaa aattcgccaa cctgcgcgcc tattatggct ggatgtgggc
    27001 cttccccggc aagaaactgc tgtttatggg gaatgagttt gcccagggac gcgagtggaa
    27061 ccatgacgcc agcctcgact ggcacctgct ggaggggggc gataactggc accacggggt
    27121 tcagcgtctg gtgcgcgatc tcaaccacac ctatcgccac cataaagcgt tgcatgagct
    27181 ggatttcgat gcttacggct ttgagtggct ggtggtcgat gacaatgaac gctcagtact
    27241 gatttttgta cgccgtgata aagccggtaa cgagatcatc gtcgccagca actttacgcc
    27301 cgttcctcgc cacgactacc gctttggcat caaccagccg ggacgctggc gtgaaattct
    27361 caatactgat tcgatgcatt atcacggtag caacaccggc aatggcggtg tggtgcacag
    27421 cgatgagatc gaaagccatg gccgtcagca ctctcttaac ctgacgttac cgccgttggc
    27481 gacgatctgg ctgatgcggg agggggaatg acgcagcttg cgatcggcga agcaacgccg
    27541 catggcgcaa cgtatgacgg tcatggcgtg aatttcacgc tcttttccgc ccatgcggag
    27601 cgcgtagagc tgtgcgtttt tgattcccga gggaatgagc gtcgctatga cctgccagga
    27661 cgtcgcggcg atgtctggca tggttatctg gcaggcgcca ggccaggttt gcgctatggc
    27721 tatcgcgtac atggcccgtg gcagccagcg caggggcatc ggtttaatcc ggcgaagtta
    27781 ctgcttgacc cttatgcgcg ccaagtcgag ggcgaactaa aagatcatcc gctgttgcac
    27841 ggcggacacg atgaaccgga ctaccgcgat aacgcggcgg tggcgccgaa aagcgtggta
    27901 atcagcgacc attatgactg ggaagatgac gccgcgccgc gcacgccgtg gggaaaaacg
    27961 gtcatctatg aagcgcatgt caaagggctt acctatctgc atccggaact cccccaggag
    28021 atacgcggca cctataaagc gctcggtcat ccggtcatgg tggcgtactt caaacagctt
    28081 ggcattacgg cgctggaact gttgccggtg gcgcagtttg ccagcgagcc gcgtctgcaa
    28141 cgtatggggc tgaccaatta ttggggttat aacccaatgg cgatgtttgc gctgcatccc
    28201 gcctgggcca gttcgcccga gacggcgctg gacgagtttc gcgatgcggt gaaagcgctg
    28261 catcgcgcgg ggattgaggt cattctggac atcgtattaa accatagcgc cgagctggat
    28321 ctggacggtc caaccttctc cctgcgcgga attgataacc gtagctatta ttggataagg
    28381 gacgatggcg attatcacaa ctggacgggg tgcggcaaca cgctcaattt aagccatccc
    28441 ggcgtggtgg aatacgcgtg cgagtgtttg cgctattgga tggaaacctg tcatgtcgat
    28501 ggttttcgtt ttgatttggc gtccgtcatg gggcgcacgc cgacgtttcg ccaggatgcg
    28561 ccgctgttcg ccgcgattaa agcgtgtcct gtgttatcaa cggtcaagct gattgctgaa
    28621 ccgtgggata ttggcgaggg cggctatcag gtcgggaatt ttccgccacc gtttgccgag
    28681 tggaacgatc attttcgcga tgcggcccgc cgattctggt tgccgcgtaa cctgacgacc
    28741 ggggagtttg cctgtcgttt cgccgcttcc agcgatgtgt ttaaacgcaa tggccgcgcg
    28801 cccggcgcct ctgtcaatct gctcacggcg catgacggtt ttacgctccg ggactgcgtc
    28861 tgtttcaatc agaaacacaa tgaggcgaac ggtgaggaaa atcgcgacgg caccaacagc
    28921 aattacagcg acaatcatgg taaagaagga ttaggcggtc cgcttgattt aatggagcgg
    28981 cggcgcgaca gcattcatgc cctgctggcg acgctactgc tctctcaggg aacgccgatg
    29041 ctgctggcag gcgatgaaca cggccatagc cagcacggca acaataacgc ctactgtcag
    29101 gataatgcct taacctggct ggactggcag caggcaaatc gtgggttaac cacgtttacc
    29161 gccgcgctga ttcgtttgcg tcagcagata ccggctttaa ccggcaatag ctggtgggaa
    29221 gaaggcgatg gcaacgtgcg ttggctaaat aaaaacgcgc aacccttgag tgcggatgag
    29281 tggcaaaacg gacctaagct gatgcaaatt ctgttgtcgg accgttttct gattgcgata
    29341 aatgccacgc ttgaggtgac agatatagtt ttacccgaag gggaatggcg cgccgttccc
    29401 ccattcgctg gagaggataa tccggtgata acggcggtct ggcagggact gtgtgtgttc
    29461 cagagaggat aaaaaaggag ttaatcatgg tgagtttaga gaagaacgat cgtgtaatgt
    29521 tggcgcgcca gctgccattg aaatctgttg ccctaatcct ggccggcggc cgcggcacgc
    29581 gtctaaaaga tttaacgaac aaacgcgcca aaccagccgt ccactttggt gggaagttcc
    29641 gcatcatcga tttcgcctta tctaattgtc tgaactccgg gattcgccgt atcggcgtga
    29701 tcactcagta tcagtcccac acgctggtgc agcatattca gcgcggctgg tcactgttta
    29761 gcgaagagat gaacgaattt gtcgatctgc tgccagccca acagcgtatg aagggcgaaa
    29821 actggtatcg cggcacggca gacgcggtga cccagaacct ggatattatt cgttgctata
    29881 aagcggaata tgtcgtcatc ctggcaggcg atcatatcta caagcaggac tactcgcgta
    29941 tgttgatcga tcacgttgaa aagggcgcgc gttgcacggt ggcctgtatg ccggtgccga
    30001 tcaaagaagc gacggcgttc ggcgtgatgg cggtcgatga aaacgacaag attattgatt
    30061 ttgtcgaaaa accggcgaat ccccccgcaa tgcctggtga cgccagcaaa tcgctggcca
    30121 gtatgggcat ttacgttttt gacgccgatt acctgtatga attgttggcg gcagacgata
    30181 aagatgacgc ttccagccac gatttcggta aagacattat ccccaaaatc acccgcgaag
    30241 gtatggctta cgcgcatcct ttcccgctct cctgcgtgca gtccgatcca caagccgaac
    30301 cgtactggcg tgatgtaggt acgctggaag cttactggaa ggcgaacctg gatttagcct
    30361 cggtgacgcc ggagctggat atgtatgacc agaactggcc tatccgtacg catatggaat
    30421 cgctaccgcc tgcgaaattc gtgcaggacc gctccggtag ccacggtatg acgctgaact
    30481 cgctggtctc cggcggctgc attatctctg gttcggtggt ggtgcaatct gtgctcttcc
    30541 cacgggtgag aataaattct ttttgtaata ttgattcggc agtgttgtta cctgaggttt
    30601 gggtagggcg ctcctgccgt ttacgtcgct gtgttattga ccgtgcctgt attatcccgg
    30661 aaggcatggt gattggtgaa aatgcggaag aggacgctcg tcgtttctac cgttcagaag
    30721 aaggtattgt actggtcacg cgtgaaatgc tgcgcaaact gcaggtcaaa caggagcgat
    30781 aatgcaggtt ttacatgtat gttcagagat gttccccctg ctgaagactg gggggctggc
    30841 ggatgtgata ggcgcgttgc ctgcggcaca aattgcggat ggtgttgatg ttcgcgttct
    30901 gcttcctggg tttcccgata tccgtcgggg gatacccgat gcgcatgtgg tgagccgccg
    30961 cgatactttc gcaggtaaga tatcgctgct gttcgggcat tataacggcg tgggcattta
    31021 tctgatcgac gcgccgcatc tgtacgagcg tccaggcagt ccctatcacg atacgaattt
    31081 atatgcctat atcgataacg tgctgcgctt tgccctgtta gggtgggtcg gctgtgaaat
    31141 ggcctgcgga cttgatccat tctggcgccc cgacgtggtg cacgcccatg actggcacgc
    31201 cgggctggcg cccgcctatc tggcggcgcg cgggcggccg gcgaaatcgg tctttaccgt
    31261 acacaacctg gcctatcaag gcatgtttta tgcaaagcat atggatgaca tcgagctgcc
    31321 gtggtcattc tttaatatgc atgggctgga gttcaacgga caactctcct ttttgaaggc
    31381 cggtttgtac tatgccgacc atattacggc ggtgagcccg acctatgcgc gtgaaattac
    31441 cgaaccgcag tttgcttatg gtatggaagg cctgttgcgt cagcgtcatc tggaagggcg
    31501 cttgtccggc atactgaacg gcgtggatga gaagatctgg aacccggaat ccgatctgct
    31561 gctggcgtcg cgctacacgc gcgataccct ggaagagaag gcggaaaaca aacgtcagct
    31621 acaaattgcg atggggttga aggttaacga caaagtgccg ctgttcgccg tggtaagccg
    31681 tctgaccaac cagaaaggtc tggatctggt gctggaggcg ttaccggggc tgctggagca
    31741 gggcggccag ttggcgctac ttggcgcggg cgatccggtg cttcaggagg ggttcctcgc
    31801 ggcggcggcg gaacacccag ggcaggctgg cgtacagatc ggctatcacg aagctttctc
    31861 gcatcgcatt atgggcggcg cggacgttat tctggtgccc agtcgtttcg aaccgtgcgg
    31921 cttaacgcag ttatatggct taaagtatgg cacgctgcct ctggtgcggc gtaccggggg
    31981 gttggccgat acggtctccg acagttcgct ggaaaatctg gcggacggta tcgccagcgg
    32041 ttttgtcttt gaagacagta atgcctggtc gttgctacgc gcgattcggc gtgcttttgt
    32101 gttgtggtca cggccttcgc tttggcggtt tgtacaacgg caggcgatgg cgatggattt
    32161 tagctggcaa gttgccgcga aatcataccg cgagctgtac tatcgcttga aatagtcatc
    32221 caggaatcat ttatatgaat gctccgttta cttatgcatc gcccacactc agcgttgagg
    32281 cgcttaagca ttctattgcc tataagctga tgtttacgat tggtaaagac ccggtcattg
    32341 ccaataaaca cgaatggctg aacgccacgt tgttcgcggt gcgcgatcgt ctggtggagc
    32401 gctggctgcg ttctaatcga gcccaattat cgcaggaaac ccggcaggtt tattacctgt
    32461 cgatggagtt tttgattggt cgtactctct ctaacgcgct gctctcgctg ggcatttatg
    32521 acgacgttaa aggcgcgctg gaggccatgg gcttagatct cgaagagctg atcgatgaag
    32581 agaatgaccc agggcttggc aacggcggct taggacggct ggcggcttgc ttcctggact
    32641 cgctggcgac gctaggatta ccgggtcgcg ggtatggcat tcgctacgac tacggcatgt
    32701 ttaagcagaa tattgtcgac gggcggcaaa aagaatctcc ggattactgg ctggaatatg
    32761 gcaacccgtg ggagttcaag cgccacaata cgcgctataa ggtgcttttt ggcgggcgca
    32821 ttcagcagga aggtaaaaaa gcgcgctgga ttgagacgga agagattctg gccgtcgcgt
    32881 atgatcagat catccccggt tacgacaccg acgccactaa cacactgcgg ctgtggaatg
    32941 cgcaggccag tagtgaaatc aacctcggta aattcaacca gggcgactac tttgcggcgg
    33001 tggaagataa aaaccactct gagaacgttt cacgggtgct ctacccggac gattccacct
    33061 attccggacg cgagctacgc ctgcgccagg agtattttct ggtctcggcg acggtacagg
    33121 atatcctgca ccgtcattat caactgcata aaacctatga gaatctggcg gataaaatcg
    33181 ccattcacct caatgatacg catccggtgc tgtcaattcc ggagctgatg cgcctgctga
    33241 ttgatgaaca taaatttagc tgggacgacg cgtttgaggt gtgctgtcag gtcttctctt
    33301 ataccaacca tacgttgatg agcgaggcgc tggaaacctg gcccgtcgat atgctgggga
    33361 aaattctgcc ccgtcacctg cagattatct tcgagattaa cgactatttc ctgaaaacgt
    33421 tgcaggagca atatcccaac gataccagcc tgcttggacg cgcgtcgatt attgatgagt
    33481 cgaacggtcg ccgggtacgg atggcctggc tggcggtggt agtcagccat aaagtcaacg
    33541 gcgtttctga actccattcc aacctgatgg tgcagtcgct gttcgcggat tttgcgaaga
    33601 ttttcccgac ccgtttttgt aacgtcacga acggcgttac gccgcgccgc tggctggcgc
    33661 tggcaaaccc gccgctttct gacgtgctgg atgagaatat tggtcgtacc tggcgtaccg
    33721 atcttagtca gctcagcgag ctgaagcagc attgtgatta tccgctggtc aatcatgcgg
    33781 tgcgtcaggc gaagctggaa aataaaaagc ggctggcggt agtgatagcg caacaactga
    33841 atgtggtggt gaaccctaaa gcgttattcg acgtgcagat taagcgtatt cacgaataca
    33901 agcggcagtt gatgaacgta ctgcatgtca ttacccgcta taaccgcatt aaagaaaatc
    33961 cggaggccga ctgggtgccg cgggtgaata tttttgccgg taaggcggct tccgcctatt
    34021 acatggcaaa acatatcatt catctgatca acgacgtggc gaaagtgatt aacaacgatc
    34081 cgcagattgg cgacaagctg aaagtagtgt ttatcccgaa ctacagtgtc agtctggcgc
    34141 aggtgatcat tcccgctgcc gacctgtctg agcagatttc gctggcaggg acagaagctt
    34201 ccggcaccag taatatgaaa tttgccctga acggcgcgct caccattggt acgctggatg
    34261 gcgcgaacgt agagatgcag gagcatgtcg gcgaggagaa tatctttatc ttcggtaata
    34321 ctgcagaaga ggtggaagcg ttgcgcagac agggttataa gcctcgcgac tattatgaaa
    34381 aagatgaaga gctacatcag gtactgacgc agattggtaa cggcgtcttt aatccggaag
    34441 agccaggccg ttaccgcgat ctggtagatt cgctgattaa ctttggcgat cactatcagg
    34501 tgctggcgga ctaccgcagc tacgtggact gccaggataa ggtggatgag ttgtatcgtc
    34561 gcccggaaga gtggacgacg aaagcgatgc tcaacattgc caatatgggc tacttctcat
    34621 cggacagaac catcaaagag tatgccgaaa atatctggca tattgatccg gtgcggttgt
    34681 aaatcccgat gccgacggcg cttcgcttgc ccggcctacg tttatgtatc cttgtaggcc
    34741 ggatcaggcg ttagccgcca tccggcattt ttctcaggac gccagtgaaa gttggtgttt
    34801 ctcaacatac gccgccagcc actgggtgat gcgggactgc tgctcggcgg tcagccacat
    34861 gccttctttg gtgcgacgcc agatagcgtc ttcagtacgg cgcacccatt cgtgatccac
    34921 caagtatttg agttccgctt cgtaaaactc atgaccgaaa tcttcgccta aatcaagcag
    34981 tgacgtggct tcgccgagaa tccactccgt gttgctgccg taagtgcgcg aatagtggcg
    35041 cgccagcgat tccgtcagga acggataacg acgacgcagc ttcgccgcgt aatcttcgcg
    35101 gctgccgtcg atgtcgccgc cgggcagtac gcacgttttg gtccatgccg gcccgatgcc
    35161 tggataataa gacgccagtt tttccatcgc atgttcggcc agcttacggt aggtcgtgag
    35221 cttaccgcca aacacggaaa gcagcggcgc tttgccgttt tcatcatgga tatcaagggt
    35281 ataatcgcga gtgatcgcct gcggcgagtc ggactcatca tcgcacagcg gacggacacc
    35341 ggagtacgtc cagacgatgt catcgcgccc cagttgtttc tggaagtgcg cgttatagac
    35401 cttcaacagg taattaattt cgctctcttc aatttttacc gctttcggat cgcctttata
    35461 ttcgacatcg gttgtgccaa tgatcgaaaa ctcttccatc cacggaatga caaagacgat
    35521 acgcttatct tcgttttgca gaatatacgc ctgtttctga ttatggacgc gcggcacgac
    35581 gatatggctg cctttgatca ggcggatgcc atacggcgac ggcaggtgca tcccttcgtc
    35641 gaagaactgt ttgacccacg ggccggtggc gttaaccagt ccgcgcgcct gccagacata
    35701 ttttttaccg gtgtcgatat cttccgcttc gacaatccac aggccatttt cccgacgagc
    35761 ggcggttgcg cgagtacggg taaggacttc gccgccttta cgcaccacca tctgtgcgtt
    35821 ggccagtacc agacgcgcat cgtctaccca gcagtcggag tattcgaatc cgcgcacgat
    35881 ttcaggtttg agtaccgaat ctgcgccaaa ccgcacaccg gtggaaccgg gtaaactggt
    35941 acgtttgccg aggtgatcgt acataaacag accgatacgg atcatccagg ctggacgtaa
    36001 gtgcgggcgg tgcggcagac gaaaacgcat cgggaaggcg atgtgcggcg ccattttcaa
    36061 cagcacttca cgttcggcca gcgcttcgct gaccagacgg aactcgtagt gttcaaggta
    36121 gcgtaagccg ccgtggataa gtttcgaact ggcggaagag gttgcgcagg ccaaatcctg
    36181 cgcttccagc atgagtacgg acaaaccgcg tccggcggca tcagccgcga tgcctgcacc
    36241 gttaatgccc ccgcctatca cgatcagatc tttggtttcc atgctgccct cttgcacttt
    36301 cgttaaagtt caaaaatgtt cgttatcgaa cataatagca aagaaacgcg ctattggtaa
    36361 catcgaaaaa acattttaga gtgatatgta taacattatg gcgttaagct actccgtcaa
    36421 cgtacactgg gcgataaaat gccttaattg gcttcaccgg caataatgaa agagcgattc
    36481 atggaacaat ttgaatgtat cactgtagaa gaggcgtatc agaaactgca ccagggcgcg
    36541 gcggtgctgg tcgatattcg cgatccgcaa agttatgcca tgggtcatgc gccgcaggcg
    36601 tttcacttga ctaacgatac gctgggcgcg tttatgcgtg agcatggttt cgataccgcc
    36661 gtgatggtaa tgtgctatca cggcaacagt agtaaaggcg ccgcgcagta tctgctccag
    36721 caaggctatg atgcggttta cagcattgac ggcgggtttg aggcctggca tcgccgtttc
    36781 cctgccgatg tcgcgaatgg cgcgtaatcc cataaagatg cagcctccga cgagaagggt
    36841 atatatactg tcttcttttg tatggactaa gcgacagcaa taatgttgat gattacttcc
    36901 tttgcgaatc ctcgcgtggc gcaggcattt gttgattaca tggccaccca gggcgtcatt
    36961 cttactattc agcaacataa tcaaagcgat atctggctgg cggatgaatc gcaggccgaa
    37021 cgtgtgcggg tcgagctggc gcggtttata gaaaatcccg gcgatccgcg ttatctggcg
    37081 gctagctggc agtccgggca gactaacagc gggctacgct accgccgttt tccctttctc
    37141 gccacgctgc gtgaacgagc cggccctgtt acctggatcg tgatgctcgc ctgcgtggtg
    37201 gtctatatcg cgatgagtct catcggcgat cagacggtga tggtgtggct ggcgtggccg
    37261 ttcgatccgg ttttaaaatt tgaagtctgg cgctacttca cccatatctt tatgcacttc
    37321 tcactgatgc atattctttt taacctgctg tggtggtggt atctcggcgg ggcggtagag
    37381 aagcgcctgg gcagcggtaa attaatcgtc attacggtga taagcgcgct gctaagcggc
    37441 tatgtacagc agaaatttag cggcccgtgg tttggcgggc tgtccggcgt cgtctatgcg
    37501 ctgatggggt acgtgtggct gcgcggagag cgcgatccgc aaagcggaat ttacctccag
    37561 cgcggcttaa ttatttttgc attattgtgg atagttgctg gttggtttga ctggtttggc
    37621 atgtctatgg cgaacggcgc gcacatcgcc gggcttatcg tcggtttagc gatggccttt
    37681 gttgatacgc tgaatgcgcg aaaacgaacg tgaggcgtat ccggcctgtg gtcgagatat
    37741 ttttccaggc cgggtagggc gatgccgcta tccggcgcaa ggttggttac tttcagagat
    37801 tattcatgaa acaaacacaa cggcatgacg cgatcattga actggtgaaa aaacaggggt
    37861 acgtcagtac ggaagagctg gtggagcatt tttctgtcag cccgcaaacc attcgtcggg
    37921 atcttaacga tctggcggaa cagaatatga ttttgcgcca ccacggcggc gcggcgttgc
    37981 cctccagctc ggtgaacacg ccgtggcacg atcgtaaggc gacgcaaacg gaagaaaaag
    38041 agcgcatcgc tcgcaaagtc gcggcccaga tccccaatgg ttcaacgctg tttattgata
    38101 tcggcacgac gccggaagcc gtagcgcaca ccctgttagg gcacagtaat ttgcggatcg
    38161 tgaccaacaa tttgaacgta gcgaacacgc taatggcgaa agaggatttt cgtattatcc
    38221 tcgccggcgg cgaactccgt agccgcgacg gcggcattat tggcgaagcg acgcaggact
    38281 ttatcgccca gttccgtctc gatttcggca ttctcggtat tagcggtatt gatagcgacg
    38341 gctcattgct ggaatttgac taccatgagg tacgcaccaa gcgcgcgatt atcgaaaatt
    38401 cgcgccacgt gatgctggtg gtggatcact ctaaatttgg ccgtaacgcg atggtaaaca
    38461 tgggcagcat tagtatggtc gatgcggtct acaccgatac cctaccaccg ccgggcgtga
    38521 tgcaggtgat tgccgaccac catattcaat tagagctgtg ctaaaaagac tgtcttatca
    38581 ggcctacact ctgcgcgcga tggtaggcct gataagcgaa gcgccatcag gcacacgtta
    38641 aaccccatac cccatcatct tcagcaactg ctgcgcgtgc tgtaccgcgt cctgacggtg
    38701 cgcgacgccg agtttctggt agaggttgcg gatatgcgtc ttaatggtgg tcgcggccac
    38761 cgccagttcg ccggcaatct gttcgttgct gtaaccggaa tagataagtc ctaacacctg
    38821 ccattcacgc tgggtgagcg ggctggtgcg aataagctcc gggacatccg gatggttaag
    38881 cagacgctcg acgaagcctt cgtcaaaatg ggcgaattta tgccggtgat gttggttaat
    38941 atatcgcagg atgcgctgcg cgcgatgctg ctccatctcc ggcagcgtat tgagctggat
    39001 aagctgacgc aattgttgcg ccatggcttc tccttcaatc acaaaatggc tgataaatcc
    39061 ggtgcggttg gcgagctgta aggcatcaag caatacgcgc tgggcgtcgt ttttccgccc
    39121 ggattgccag taaagctgat tgagtaacag cagattgcgg tttaaatcgc tcattaagcg
    39181 caggctacgg gcattctcat ttaactcttc cagcacgatt tccgcaggct cgaattcgcc
    39241 cagcaggatc tgcgcgcggg cgatattgcg ccactggcct tgcagaaaat ggttattggc
    39301 aaacgccggt tttggcgtat ggcgtaacca gttggcggcg gatttcttgt cgccggttaa
    39361 ctgccagtaa atgacacgca ccttatcggc gttagagatc cagtcgcagt gataacgacc
    39421 attgcctaat aatttttcca gtcggttaag ctgactacgg gcattatcca gatcgccgcg
    39481 cgccagcgag cactgcacca gtaacgtcag gcactgcaac tgttgttgcg gctggaaggt
    39541 ggacagcaca gcgataccgc tgcgcgccga ggcttccgct tcgtcaaggc gcgcccacgc
    39601 ccacagcaat tgcgcgcgga tacgtaccag aaactcatgc atcggcagtt gttccagatg
    39661 ttgctctttg atcaactgga aggctctctc ctgcgtttcc catgcggcct gcaggaatcc
    39721 ctgggcgaac tgaatttcgc tttgttgaat taagctccac agcgcgtaat gccagacgtc
    39781 atgatggcgc gccatttgtt cggtttgctg catcagcgat aaagactggc tgagattgcc
    39841 tttacagtgc agcacttcgc cgtgaacgga ggtcgcgaca atgcggctat aaaaccaggc
    39901 gagaggaagc tcatccagcg ccagtttcgc cagccgctct gcctcttccg gattgccgtc
    39961 gttgatggcg acctgggcgc gcagcgcgtt aaattcagca tgcagcgtgc cgtccatgac
    40021 ccctttgatc tcttgctcgg cgcgcgccag cagcgtattc acttcgctgt agcggtgttg
    40081 gctttgcatc agccaggcct gtaacaacac cagccgcgga ttttccagca ggctttccca
    40141 cggcagcgct tttaatgact cttccagcag cgccagttca ctgtgattaa acagccccca
    40201 cgcatggtta agcaggatat cgcgcagcat ttgcgcgtca cccgccgcca gcgcatgatg
    40261 tatagcttcg ctgggaaaac cctgttccat ccagctttcc gcggccgcac ggtggatctc
    40321 cggcagttcc gccgccagtt cccactggca acgctggcgc agaaagctac caaacaacgg
    40381 gtgatagcta aaccattcgc ccgtgtcgtc catgcgttgc aggaataacc cctggcgctc
    40441 aatctcctcc agccgcatct ggccgttttc ttcgccggtc acgcgcacga tcaacgcgtc
    40501 attcattgag cgtaagatcg cgcttttaag taagaaatgt cgggtgctga catccacgtt
    40561 atccagtact tcgtccacca gataatcaga aaggtggctg gcattaatcc cggcaagacg
    40621 gcgggcggag tgatgcgcag aggtatggtt ctggcgcgcg gagagggcga tcaactgtag
    40681 cgcagtggcc caaccggcca catcatcgca catgcggctg ctctcagcgg cttcaatggg
    40741 cgacgaaaga cgacggtcaa aaaattgctt tgcttcctga tggttaaaag ccaactgctg
    40801 gctgccgatt tccaacagct gatcgcgcac gcgcaggtta gcgatgccca gttgcggcaa
    40861 attacgcgat aacaccacca gggtgaaatt ttccggctga tgccgtaaga aaaagcgcat
    40921 cgcgtcgtga atcaccggat tggtaatcaa atggtagtcg tcaatcacca gataaagcgg
    40981 gcgatgccac tgcgccagtt caataaagag ctgtgcgaag agagacgtca ggctggcgta
    41041 ctgacgtttt tgcgccatcg cttcgctggt agagcagtgt ccgccggtgg cctgttggat
    41101 agcggcgatt aagtaactgg cgaatcgctc ttgctggtta tcgccttcgt cgagagagta
    41161 ccagcctaat tcatttttgc ccgccgccca ctgtgagaca agcgtggttt tcccatagcc
    41221 agcaggactg gttaccagga ggagcctgaa attgttcgcg ccggaaagtt tagccaacag
    41281 ccgctcacga accacggtat ggtcgagacg aaccggacga cttaatttag acggaatcaa
    41341 catagcaatc acttcactgt gggaaatggg ggaactgcga tttttttttg cgcttcgtaa
    41401 ttaatagata taaggtcggc cagaaagcat tttaatgcaa gctaagcaga ctttttatgt
    41461 gtctgaattt gcactctgtc acaattctaa ataacggtat taaaaaagta ttcggcgcgg
    41521 ttgaaacgag cgtcagagct gggctgaggt catatttccg ttattgtaaa taatgtcct
//
LOCUS       DAJVSD010000009        39191 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.009, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000009 DAJVSD010000000
VERSION     DAJVSD010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 39191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39191
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.009"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            1..573
                     /locus_tag="OQP62_000382"
     CDS             1..573
                     /locus_tag="OQP62_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000709193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1720022.1"
                     /translation="MLAAAMVMAMGSTSAMAVEGGQIEFHGLVSATTCSKVVSSSRGN
                     QATDGDVYLTTAAPGDITEGVAANAYGALPAPFSIILDCSGAADVTDATKASLVMDSS
                     FSNTTGTLDNDTTLSVAGETGAENVNIAIHDADTKTQVKIDGAEIHEASFKNKVATYN
                     FMASYVRADASKEVTTGHVTTNAMYTFTYQ"
     gene            752..1486
                     /locus_tag="OQP62_000383"
     CDS             752..1486
                     /locus_tag="OQP62_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000967611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HCS1720023.1"
                     /translation="MLYVKKSLTAIVLASAVFSTFSYADIIISGTRIVYDENKKDVSI
                     RLENKGTRPLLVQNWIDLGNDNDDPGSIKAPFVSTPPVSRVEPKRGQSVKIMYTQASA
                     LPKDRESVFWFNVLEVPPKADTSKEENKSLLQLAFRTRIKLFYRPTGLKGQPAEAAKQ
                     LKWQIASEQGYAVLRADNSTPYFVSFNDATYTAGGKRYDVEATMVAPFSKSSFTVKGL
                     SGASAGKLEYHAINDFGGLIEGSVSL"
     gene            1546..4152
                     /locus_tag="OQP62_000384"
     CDS             1546..4152
                     /locus_tag="OQP62_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015406108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane usher protein"
                     /protein_id="HCS1720024.1"
                     /translation="MPKKTMLAVCCALFYSQSSISAESVEYDSSFLMGSSASTIDISK
                     YSDGNPTPVGTYSVKVFVNENPVSSLSIPFIDIGKVSAEACLTQKNLAQLHIKQPEIN
                     ATNQILKKGEEEDQDCLNLPVAIAHSEVNFDMGEQRLDITVPQAWLIEGYDGYVEPSL
                     WEDGIPAALLSYSANGYHSTNGSADNDSMYAAFNTGINLGAWRFRANGNYNWTKDSGS
                     SFDYQNRYLQRDLPSMRSQLVVGETYTTGETFDSVSIRGARLYSDNRMLPSQLANYAP
                     IIRGVANSNAKVSITQGGYKIYESTVPPGPFEISDISPSGYGSDLIVTVEEADGSKRT
                     FSQPFSSVMQMQRPGVGRWDFSAGEVNDDELHDKPYMAQGSYYYGLNNFLTLYTGVQG
                     TDNNYLAGLLGVGLNTPLGAFALDVTQSRTEIPEDKTYKGQSYRLTWNKLIEPTATSF
                     NVAAYRYSTQDYLGLNDALQLIDDAKHKDADDRNTMLNYSRMKNQVTVSINQPLRFKE
                     VDYGSFFLSGSWTDYWATNESRTDYSLGYGRGFSWGSLSINLQRSWDEDGEKDDSLYI
                     NFNVPLENLLGGGRRKSGFSSLTAQMRTDFDGGYQLSMNSNGSSEDHTLNYSVNTGYT
                     MQKNEKNITDVSGYASYQSPWGDVTASASANNDSSRQYSLATTGDFVLHGGGVTFTND
                     NFGNSDAIVLVKAPGAKGARINGGNSTIDRWGYGATNSLSAYRENQVNIDIDTLENDV
                     ELKSTSTTLIPRDGAVVLASFETDQGRSVILNMSRNDGKALPFGAEVYENDVQIDNMG
                     QGGQAFVRGISDAGELSVRWFEENQPATCLATFALPATQQTVGSSQTLLLDHITCRVN
                     NLKSNGIDNEKE"
     gene            4139..4705
                     /locus_tag="OQP62_000385"
     CDS             4139..4705
                     /locus_tag="OQP62_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000827925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1720025.1"
                     /translation="MKRNKYLLAASVLAVIFPLTSQAENINVDFTATVLATTCSMSIA
                     ALDGSNLSGDATSGYTLNVGDVGLDKIIKKSAESQKNFKFVAKDCSAALTKITTTLAS
                     STDASGNFIKNQSAASGAATNVGMGFKRKSTTDETYFTPGSGSFSWTSDERAANEVEM
                     TVALRELTDGAGTTGAFSSTATFNFTYQ"
     gene            4720..5328
                     /gene="staE"
                     /locus_tag="OQP62_000386"
     CDS             4720..5328
                     /gene="staE"
                     /locus_tag="OQP62_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000744142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein StaE"
                     /protein_id="HCS1720026.1"
                     /translation="MKKQILRVVIFSSLIATGAGISTMTYADGTNSLDLTVNANITAG
                     TCSASVVEGDTITDTIAFGNVYISEVYAKSKIKLFKLRFSDCVGLKDKKAKFRLAPNN
                     VACPGSSGTDGQFANASTSTTKAAMVAMEVWTTETPGGTGAVKLHCWSKPEQTVDLSG
                     ASVTTPVDFPLSAMMVAQSGGTLQNMTAGDFYSPTTFTITYQ"
     gene            5340..5924
                     /locus_tag="OQP62_000387"
     CDS             5340..5924
                     /locus_tag="OQP62_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001253684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1720027.1"
                     /translation="MRRLREPTLATLFSGLATALFSATLYADTNVNFTASVQKDTCQI
                     KIDGNGTVNFATIAPAYFADGITAETDYEGGKEFTIKLISCPISDGKITNVTFNFAPL
                     NGQFSPENQQVFPNDIATDAGGVDNVGVVIFTTDSPRTNVLNTDGSSRATFAASTYSD
                     TVWTFYSRMQKIRSAEKVTTGELSSRVLVNVSYE"
     gene            5961..7136
                     /locus_tag="OQP62_000388"
     CDS             5961..7136
                     /locus_tag="OQP62_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000925246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial-like adhesin"
                     /protein_id="HCS1720028.1"
                     /translation="MLLKNTTWFAAFFLMMAIMSNCYAINTTLAVGDYASSEHDGPSG
                     DSVFTDNSHNFGQTIAIHKETALRQITVFNWSGIQYVMEMFCNGSGNHTYLQLTHNYI
                     SAGKSYNGHPLYKTSIPGFYFTIEMTFLQPAENMTSSTFWFDKTSTPITSEFTEFPSA
                     CSRTNVYSNLGKLMYGLKIYAYVDSDFAPTEAQLQSFTLSKNGDSDFYIDNPGSGLSN
                     YKMKFNLAATGLKAVWPTCSASTISGTNVSGSTVKLGSFYPKQIMEGLSPTKFQINLS
                     SCQYINNIEVKLASNNVGTKNTSLLTNNSTSNTKASGIGVLIEGLKSSSSAQMVLKPN
                     DSSSIYKDTTNNTGDGSPVGSATKSLYFQATLKPDGDNPTINPGDFKATAQFSITYP"
     gene            7246..8040
                     /gene="panB"
                     /locus_tag="OQP62_000389"
     CDS             7246..8040
                     /gene="panB"
                     /locus_tag="OQP62_000389"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HCS1720029.1"
                     /translation="MSKPTTIAVLQKCKQEKKRFATITAYDYSFAKLFADEGINVMLV
                     GDSLGMTIQGHDSTLPVTVEDIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQAFENAA
                     IVMRAGANMVKIEGGAWLVDTVKMLTERAVPVCGHLGLTPQSVNIFGGYKIQGRGDAG
                     QILLDDALALEAAGAQLLVLECVPVELAKRVTEALSIPVIGIGAGNVTDGQILVMHDA
                     FGITGGHIPKFAKNFLAEAGDMRAAVRQYMAEVESGVYPGEEHSFH"
     gene            8166..9020
                     /gene="panC"
                     /locus_tag="OQP62_000390"
     CDS             8166..9020
                     /gene="panC"
                     /locus_tag="OQP62_000390"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HCS1720030.1"
                     /translation="MLIIETLPLLRQHIRRLRQEGKRVALVPTMGNLHDGHMKLVDEA
                     KARADVVIVSIFVNPMQFDRPDDLVRYPRTLQEDCEKLNKRKVDYVFAPAVEEIYPQG
                     LEGQTYVDVPGLSTMLEGTSRPGHFRGVSTIVSKLFNLIQPDIACFGEKDFQQLALIR
                     KMVADMGYDIEIVGVPIIRAKDGLALSSRNAYLTAEQRKIAPGLYNVMNSIAEKLIAG
                     NRELQEIIAIAEQELNEKGFRADDIQIRDADTLLELTETSKRAVILAAAWLGQARLID
                     NQSVTLAQ"
     gene            9115..9495
                     /gene="panD"
                     /locus_tag="OQP62_000391"
     CDS             9115..9495
                     /gene="panD"
                     /locus_tag="OQP62_000391"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HCS1720031.1"
                     /translation="MIRTMLQGKLHRVKVTQADLHYEGSCAIDQDFLDASGILENEAI
                     DIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCAEVGDIVIIASFVTMSDEEARTWR
                     PKVAYFEGDNEMKRTAKAIPVQVA"
     gene            complement(9502..10731)
                     /locus_tag="OQP62_000392"
     CDS             complement(9502..10731)
                     /locus_tag="OQP62_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HCS1720032.1"
                     /translation="MVMRVVLILLFFFAGNVLAALPARYMQTTKDAAIWSQIGDKMVT
                     VGNIRAGQILSVTPVAVDYYAFKFGFGVGFIDKGHLGPVQGKQKVEDGLGDLNKPLSN
                     QNLVTWKDTPVYNAPDISSAPFGVLVDNLRYPIISKLKGRLHQTWNQIRIGDRLAYVN
                     AMDAQEDNGIPILTYHHILRDEENTRFRHTSTTTSVRAFSNQMTWLRDRGYATLTMYQ
                     LEDYIYNRANFPARAVAITFDDGLKSVSRYAYPVLKQYDMKATAFIISSRIKRHPQKW
                     NPRSLQFMSVSELRKISDVFDFQSHTHFLHRVDGHRRPILYSRSYHNILFDFERSRRA
                     LTQFTPHVFYLSYPFGGYNATAIKAAKDAGFHLAVTTVRGKVKPGDNPMLLKRLYILR
                     TDSLETMSRLIVNQPQG"
     gene            complement(10793..11233)
                     /locus_tag="OQP62_000393"
     CDS             complement(10793..11233)
                     /locus_tag="OQP62_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HCS1720033.1"
                     /translation="MLGWVITCHDDRAQDMLDRLERKNGPLAQCRAVNFWRGLSSNML
                     SRMMCDALHATDSGEGVIFLTDISGAAPYRVASLMSHKHPQCEVISGISYSLIEEMIP
                     LRESMSSSAFRDQIVALGAPDVTSLWHQQQKNPPFVLLHDLYEF"
     gene            complement(11338..12108)
                     /locus_tag="OQP62_000394"
     CDS             complement(11338..12108)
                     /locus_tag="OQP62_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001747261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1720034.1"
                     /translation="MMQLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGN
                     LIGSRIGEMHGFSYMQFIVPGLIMMAVITNSYANVASSFFSAKFQRNIEELLVAPVPT
                     HVIIAGFVGGGVARGLCVGILVTAISLFFVPFQVHSWVFVALTLILTAILFSLAGLLN
                     AVFAKTFDDISLIPTFVLTPLTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGF
                     LGIHDVPLVTTFGVLVIFIATFYLLCWSLIQRGRGLRS"
     gene            complement(12105..13031)
                     /locus_tag="OQP62_000395"
     CDS             complement(12105..13031)
                     /locus_tag="OQP62_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1720035.1"
                     /translation="MTIALELQQLKKTYPGGVQALRGIDLQVEAGDFYALPGPNGAGK
                     STTIGIISSLVNKTSGRVNVFGYDLEKDVVNAKRQLGLVSQEFNFNPFETVQQIVVNQ
                     AGYYGVEHKEAVLRSEKYLKQLDLWEKRHERARMLSGGMKRRLMIARALMHEPKLLIL
                     DEPTAGVDIELRRSMWGFLKDLNAKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENT
                     SMKNLLSKLKSETFILDLAPKSPLPKLTGYQYRLVDTSTLEVEVLREQGVNSVFSQLS
                     EQGVQVLSMRNKANRLEELFVSLVHEKQGDRA"
     gene            13140..13802
                     /gene="can"
                     /locus_tag="OQP62_000396"
     CDS             13140..13802
                     /gene="can"
                     /locus_tag="OQP62_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HCS1720036.1"
                     /translation="MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSD
                     SRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDALEVEHIIICGHSGCG
                     GIKAAVENPELGLINNWLLHIRDIWLKHSSLLGKMPEEQRLDALYELNVMEQVYNLGH
                     STIMQSAWKRGQNVTIHGWAYSINDGLLRDLDVTATNRETLENGYHKGISALSLKYIP
                     HQ"
     gene            complement(13860..14396)
                     /gene="hpt"
                     /locus_tag="OQP62_000397"
     CDS             complement(13860..14396)
                     /gene="hpt"
                     /locus_tag="OQP62_000397"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004204384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HCS1720037.1"
                     /translation="MKHTVEVMIPEAEIKARIAELGRQITERYKDSDSEMVLVGLLRG
                     SFMFMADLCREVQVPHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDII
                     DSGNTLSKVREILGLREPKSLAICTLLDKPSRREVDVPVEFVGFSIPDEFVVGYGIDY
                     AQRYRHLPYVGKVVLLDE"
     gene            14602..16992
                     /locus_tag="OQP62_000398"
     CDS             14602..16992
                     /locus_tag="OQP62_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone-dependent
                     dehydrogenase"
                     /protein_id="HCS1720038.1"
                     /translation="MAENNARSPRLLVTLTALFAALCGLYLLIGGVWLVAIGGSWYYP
                     IAGLVMLVVAGLLWRSKRAALWLYAALLLATMIWGVWEVGFDFWALTPRSDILVFFGI
                     WLILPFVWHRLVVPSSGAVAALVVALLISGGILTWAGFNDPQEINGTLRADATPAATS
                     SSIADEDWPAYGRNQEGQRYSPLKQITADNVHQLKEAWVFRTGDLKQPNDPGEITNEV
                     TPIKVGDTLYLCTAHQRLFALDAASGKEKWHFDPQLKTDSSFQHVTCRGVSYHEAKAD
                     TASPEVIADCPSRIILPVNDGRLFAVNAETGKLCETFANKGVLNLQTNMPDTTPGLYE
                     PTSPPIITDKTIVIAGSVTDNFSTRETSGVIRGFDVNSGKLLWAFDPGAKDPNTIPAD
                     EHAFTFNSPNSWAPAAYDAKLDLVYLPMGVTTPDIWGGNRTPEQERYASSILALNATT
                     GKLAWSYQTVHHDLWDMDLPAQPTLADITVDGTTVPVIYAPAKTGNIFVLDRRNGELV
                     VPAPEKPVPQGAAKGDYVAKTQPFSDLTFRPKKDLSGADMWGATMFDQLVCRVMFHQL
                     RYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPDRQVAIANPMALPFVSKLIPRGPGN
                     PMEPPKDAKGTGTEAGIQPQYGVPFGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEI
                     VWKKRIGTPRDSMPFPMPVPVPFNMGMPMLGGPISTAGNVLFIAATADNYLRAYNMSN
                     GEKLWQGRLPAGGQATPMTYEVNGKQYVVISAGGHGSFGTKMGDYIVAYALPDDAK"
     gene            complement(17070..18680)
                     /gene="cueO"
                     /locus_tag="OQP62_000399"
     CDS             complement(17070..18680)
                     /gene="cueO"
                     /locus_tag="OQP62_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HCS1720039.1"
                     /translation="MLRRDFLKYSVALGVASALPLWSRAAFAAERPALPIPDLLTADA
                     SNRMQLIVKAGQSTFAGKNATTWGYNGNLLGPAVQLHKGKSVTVDIHNQLAEDTTLHW
                     HGLEIPGIVDGGPQGIIPAGGTRTVTFTPQQRAATCWIHPHKHGKTGRQVAMGLAGLV
                     LIEDDEIRKLRLPKQWGIDDVPVIIQDKRFSADGQIDYQLDIMTAAVGWFGDTLLTNG
                     AIYPQHSAPKGWLRLRLLNGCNARSLNIAASDNRPLYVIASDGGLLAEPVKVTELPLL
                     MGERFEVLVDISDGKAFDLVTLPVSQMGMAIAPFDKPHPVMRIQPLRITASGTLPDTL
                     TTMPALPSLEGLTVRNLKLSMDPRLDMMGMQMLMKKYGAQAMSGMDHDSMNAHMQGGN
                     MGHGEMDHGNMDHSGMNHGAMGNMNHGGKFDFHNANFINGQVFDMNKPMFAAQKGRHE
                     RWVISGVGDMMLHPFHIHGTQFRILSENGKAPAAHRTGWKDTVRVEGGISEVLVKFDH
                     DAPKEHAYMAHCHLLEHEDTGMMLGFTV"
     gene            18882..19229
                     /locus_tag="OQP62_000400"
     CDS             18882..19229
                     /locus_tag="OQP62_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacC family pilotin-like protein"
                     /protein_id="HCS1720040.1"
                     /translation="MKTFFRPVLFGSLMALCANSYALTESEAEDMADLTAVFVFLKND
                     CGYQNLPNSQIRRALVFFAQQNQWDLSNYDTFDMKSLGEDSYRDLSGIGIPVAKKCKA
                     LARDSLSLLAYVK"
     gene            19336..20196
                     /gene="speE"
                     /locus_tag="OQP62_000401"
     CDS             19336..20196
                     /gene="speE"
                     /locus_tag="OQP62_000401"
                     /EC_number="2.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HCS1720041.1"
                     /translation="MAENTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFG
                     RVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVE
                     TITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCT
                     DPIGPGESLFTPAFYEGCKRCLNPGGIFVAQNGVCFLQQDEALDSHRKLSHYFSDVGF
                     YQAAIPTYYGGIMTFAWATDNDALRHLSSEIIQARFHAAGLKCRYYNSAIHAAAFALP
                     QYLHDALSAQ"
     gene            20217..21011
                     /gene="speD"
                     /locus_tag="OQP62_000402"
     CDS             20217..21011
                     /gene="speD"
                     /locus_tag="OQP62_000402"
                     /EC_number="4.1.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine decarboxylase"
                     /protein_id="HCS1720042.1"
                     /translation="MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYN
                     ANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPIDPKLIDQTEHPGPLP
                     ETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDI
                     VTIDYRVRGFTRDVNGMKHFIDHEINSIQNFMSEDMKSLYDMVDVNVYQENIFHTKML
                     LKEFDLKHYMFHTKPEDLTETERQQITAALWKEMREIYYGRNISAV"
     gene            complement(21041..21808)
                     /locus_tag="OQP62_000403"
     CDS             complement(21041..21808)
                     /locus_tag="OQP62_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1720043.1"
                     /translation="MKGQHRLDLIVAYLKNHTLVTVEQLVEAVDASPATIRRDLIKLD
                     EQGVISRSHGGVALRRFEPAQPTTNEKQLRSPAEKRAIARVAASLVNAGDAVVLDAGT
                     TMMELAKCLTHLPLRVITVDLHIALFLAEFRQIEVTIVGGRIDDSSQSCIGEHGRKLL
                     RSVYPNIAFMSCNSWGVKTGVTTPTEDKAGLKQEIIANAQRKVLLADSSKYGAHSLFN
                     VVPLERFNDVITDVNLPPSAQVELKGRAFALTLVQPE"
     gene            complement(21818..22801)
                     /locus_tag="OQP62_000404"
     CDS             complement(21818..22801)
                     /locus_tag="OQP62_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-threonate 4-phosphate dehydrogenase"
                     /protein_id="HCS1720044.1"
                     /translation="METKTVAITMGDPAGIGPEIIVKALSEDGLNGAPLVVIGCLATL
                     KCLQAKGITPNVELRAIERVAEARFAPGIIHVIDEPLAQPEALEAGKVQAQAGDLAYR
                     CVKRATELALRGDVQAIATAPLNKEALHLAGHNYPGHTELLATLTHSRDYAMVLYTDK
                     LKVIHVSTHIALRKFLDTLSTTRVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENG
                     LFGDEETRILTPAITDARAKGMDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLK
                     LLGFYDGVNITAGLPFIRTSADHGTAFDIAWTGKAKSESMAVSIKLAMQLA"
     gene            complement(22791..24062)
                     /locus_tag="OQP62_000405"
     CDS             complement(22791..24062)
                     /locus_tag="OQP62_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-threonate kinase"
                     /protein_id="HCS1720045.1"
                     /translation="MKMMVIADDFTGSNDTGVQLAKKGARTEVMLSASQKPSRRADVL
                     VINTESRAMPADQAASAVYAALSPWCETSPAPLVYKKIDSTFRGNIGAEVTAAMRASQ
                     RKLAVIAAAIPAAGRTTLEGKCLVNGAPLLETEFASDPKTPIVSSRIAEIVALQSEIP
                     VYEVFLQDVRRGGLSALLTAYAAEGEGIIVVDAVEERDLTLIAQAACEQPSMPLLVGA
                     AGLANALPVELFMQDRQRLPVLVVAGSMSEATRRQVDNALCRGRAEVVDIDAARMVSD
                     SAEQEIASVVEQACALLSQHRHTILRTSRRAEDRQLIDALCEKSAMSRQQLGERLSHR
                     LGVVTLNIIEQARIGGLFLTGGDIATAVAGALGAEGYRIQSEVAPCIPCGTFVNSEID
                     DLPVITKAGGFGSDSTLCDALYYIEEMYCGD"
     gene            complement(24059..25012)
                     /locus_tag="OQP62_000406"
     CDS             complement(24059..25012)
                     /locus_tag="OQP62_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate permease 1"
                     /protein_id="HCS1720046.1"
                     /translation="MNIKKAIERVPGGMMVVPLVIGAVINTFAPQALEIGGFTTALFK
                     NGAAPLIGAFLLCMGAGISVKAAPQALLQGGTITLTKLLVAIGIGLGVEHLFGAEGIF
                     GLSGVAIIAAMSNSNGGLYAALVGEFGNERDVGAISILSLNDGPFFTMIALGAAGMAN
                     IPIMALVAVLVPLVVGMILGNLDPHMRDFLTKGGPLLIPFFAFALGAGINLEMLLQGG
                     LAGILLGVLTTFVGGFFNIRADRLVGGTGIAGAAASSTAGNAVATPLAIAQADPSLAE
                     VAAAAAPLIAASVITTAILTPVLTSWVAKKQARQASLEKNA"
     gene            complement(25247..25609)
                     /locus_tag="OQP62_000407"
     CDS             complement(25247..25609)
                     /locus_tag="OQP62_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacL family protein"
                     /protein_id="HCS1720047.1"
                     /translation="MDYEFLRDVTGRVLVRMSMGHEVVGHWFNEEVKDNLSLLDEVEQ
                     AARTVKGSERSWQRAGHEYTIWMDGEEVMIRANQLDFSGDEMEEGMSYYDEESLSLCG
                     MEDFLRVVAAYREFVSKA"
     gene            complement(25797..28394)
                     /gene="acnB"
                     /locus_tag="OQP62_000408"
     CDS             complement(25797..28394)
                     /gene="acnB"
                     /locus_tag="OQP62_000408"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HCS1720048.1"
                     /translation="MLEEYRKHVAERAAQGIVPKPLDATQMAALVELLKTPPVGEEEF
                     LLDLLINRVPPGVDEAAYVKAGFLAAVAKGDTTSPLVSPEKAIELLGTMQGGYNIHPL
                     IDALDDAKLAPIAAKALSHTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLSRP
                     PLAEKITVTVFKVTGETNTDDLSPAPDAWSRPDIPLHAQAMLKNAREGIEPDQPGVVG
                     PIKQIEALQKKGYPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRGGGLCLGG
                     KIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDVYPYKGEVRNHETDELLATFELKTDV
                     LIDEVRAGGRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESSRGFSLAQKMVGRA
                     CGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPK
                     PVDVTTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISF
                     PAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVE
                     KKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIVEYLTSNI
                     VLLKWMIAEGYGDRRTLERRIQGMEKWLADPQLLEADADAEYAAVIDIDLADIKEPIL
                     CAPNDPDDARLLSDVQGEKIDEVFIGSCMTNIGHFRAAGKLLDSHKGQLPTRLWVAPP
                     TRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLG
                     TGANVFLASAELAAVAALIGKLPTPEEYQTFVAQVDKTAVDTYRYLNFDQLSQYTEKA
                     DGVIFQTAV"
     gene            28783..30405
                     /locus_tag="OQP62_000409"
     CDS             28783..30405
                     /locus_tag="OQP62_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459162.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3300 domain-containing protein"
                     /protein_id="HCS1720049.1"
                     /translation="MTLPFKPHLIALVCSAGLFAASGVLYVKSRAPEAPAQAAAPTSE
                     PTQTAVPAPVAKTTFTTAQIDQWVAPVALYPDALLSQVLMASTYPANVVQAVQWSRDN
                     PTLQGDAAIQAVASQPWDPSVKSLVAFPQLMALMGENPQWVQNLGDAFLAQPQDVMDA
                     VQRLRLLAQQTGSLKSTPQQTVTSVPKSSASTAVTTTTTTSASTPATPSTVIKIEPAN
                     PQVVYVPNYNPTTVYGAWPNTAYPPVYLPPPPGQQFADSFVKGFGYSLGVATTYALFS
                     SIDWDDDDHHHHDDDHHDDDYHHGGNGYQHNGDNININVNNFNRISGQNLPGQTMGWQ
                     HNPAWRNGVPYPNNTVAQRFHPTNVSGGLSATQQAPVSRDSQRQAAMAQFQQRSHTSP
                     ANVSGETSRDRQRKAASQQLNQIAQRNNYRGYDGTQNSSRREAAQQTLNKSTTQQHRS
                     ELKAKAQQHPVSQQQRDTARQRIESSTPQQRQAFRQNMHANVFSGNDSRSPSWQSQQL
                     RGLESRRGSHLNTEQRAAAREHFSEHHEFHRR"
     gene            30418..31209
                     /locus_tag="OQP62_000410"
     CDS             30418..31209
                     /locus_tag="OQP62_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2950 family protein"
                     /protein_id="HCS1720050.1"
                     /translation="MKKVMLSALLLSLPLLGYAQERFPSPEAAASAFAAAVAGKNETQ
                     LTALLGDDWRQFLPPEGADPEAVARFNRDWREGHRIVQKDNTAHLNVGREDWQLPVPM
                     VKETGGWRFDMAAAGNEILTRTIGRNELSTLQAMHAYVDAQQDYYLQNHRWAHRIISS
                     EGQKDGLYWPTKAGDVPSPLGPNFSPAAPDEGYHGYHFRIISDNDGHGAALLAWPMHY
                     GETGVMSFMVNQDDRIYQADLGKETESKVQAITRFAPDAQWQVAE"
     gene            complement(31247..31531)
                     /locus_tag="OQP62_000411"
     CDS             complement(31247..31531)
                     /locus_tag="OQP62_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein"
                     /protein_id="HCS1720051.1"
                     /translation="MKLFLTTAALTATLISGMAFASDPVIPWATNSGGTESTHIAAMG
                     EDLNAQHQQITHTHEGVWAANSGSIQADEAALTSNKPPVQGHPELMPHQG"
     gene            complement(31820..33244)
                     /gene="lpdA"
                     /locus_tag="OQP62_000412"
     CDS             complement(31820..33244)
                     /gene="lpdA"
                     /locus_tag="OQP62_000412"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HCS1720052.1"
                     /translation="MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGV
                     CLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVITQLTGGLA
                     GMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDP
                     RVWDSTDALELKEVPKRMLVMGGGIIGLEMGTVYHALGSEIDVVEMFDQVIPAADKDI
                     VKVFTKRISKKFNLMLETKVTAVEAKEDGIYVSMEGKKAPAEAQRYDAVLVAIGRVPN
                     GKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV
                     IAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDC
                     ADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE
                     SVGLAAEIFEGSITDLPNPKAKKK"
     gene            complement(33446..35335)
                     /gene="aceF"
                     /locus_tag="OQP62_000413"
     CDS             complement(33446..35335)
                     /gene="aceF"
                     /locus_tag="OQP62_000413"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459158.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex
                     dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HCS1720053.1"
                     /translation="MAIEIKVPDIGTDEVEITEILVKVGDKVEAEQSLITVEGDKASM
                     EVPSPQAGVVKEIKVSVGDKTETGALIMIFDSADGAADAAPAQAEEKKEAAPAAAPAA
                     AAAKDVHVPDIGSDEVEVTEVMVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEI
                     KVNTGDKVSTGSLIMVFEVAGEAGAAAPAKAEAAPAAAAPAAATGVKDVNVPDIGGDE
                     VEVTEVMVKVGDKVTAEQSLITVEGDKASMEVPAPFAGTVKEIKISTGDKVKTGSLIM
                     VFEVEGAAPAAAPAKQEAAAPAPAAKAEKPAAPAAKAEGKSEFAENDAYVHATPLIRR
                     LAREFGVNLAKVKGTGRKGRILREDVQAYVKDAIKRAEAAPAAAGGGIPGMLPWPKVD
                     FSKFGEVEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITDLEAFRKQQNAEAEKR
                     KLDVKYTPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVVP
                     VFKDVNKKSVTELSRELTTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVNA
                     PEVAILGVSKSAMEPVWNGKEFVPRLMMPISLSFDHRVIDGADGARFITIINNMLSDI
                     RRLVM"
     gene            complement(35350..38013)
                     /gene="aceE"
                     /locus_tag="OQP62_000414"
     CDS             complement(35350..38013)
                     /gene="aceE"
                     /locus_tag="OQP62_000414"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008814576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HCS1720054.1"
                     /translation="MSERFQNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLSEA
                     RKGGVKVAAGAGASNYINTIAVEDEPEYPGNLELERRIRSAIRWNAIMTVLRASKKDL
                     ELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGIYARAFLEGRLTQ
                     EQMDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLK
                     DTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIV
                     NELEGIFAGAGWNVIKVMWGGRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYV
                     REHFFGKYPETAALVADWTDEQIWALNRGGHDPKKVYAALKKAQETKGKATVILAHTI
                     KGYGMGDTAEGKNIAHQVKKMNMDGVRYVRDRFNVPVADADLEKLPYITFPEGSEEHK
                     YLHERRQALHGYLPSRQPNFTEKLELPQLSDFGALLEEQSKEISTTIAFVRALNVMLK
                     NKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQIL
                     QEGINELGAGASWLAAATSYSTNDLPMIPFYIYYSMFGFQRIGDLCWQAGDQQARGFL
                     IGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEK
                     QENVYYYITTLNENYHMPAMPAGAEEGIRKGIYKLETLEGSKGKVQLLGSGSILRHVR
                     EAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMNDAPA
                     VASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGE
                     LAKRGEIDKKVVADAITKFNIDADKVNPRLA"
     gene            complement(38173..38937)
                     /gene="pdhR"
                     /locus_tag="OQP62_000415"
     CDS             complement(38173..38937)
                     /gene="pdhR"
                     /locus_tag="OQP62_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex transcriptional
                     repressor PdhR"
                     /protein_id="HCS1720055.1"
                     /translation="MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQF
                     DVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQFDLLE
                     TRHALEGIAAYYAALRSTDEDKDRIRELHHAIELAQESGDLDAESEAVLQYQIAVTEA
                     AHNVVLLHLLRCMEPMLAQNVRQNFELLYARREMLPLVSTHRTRIFEAIMAGKPEEAR
                     EASHRHLAFIEEIMLDRSREESRRERALRRLEQRKN"
BASE COUNT         9410 a        10888 c         9904 g         8989 t
ORIGIN      
        1 attttagctg ccgcaatggt tatggctatg ggttctactt ccgcaatggc agttgaaggc
       61 ggccagatcg aattccacgg tttagtgagc gcaacaacct gttctaaagt agtttcctct
      121 tcacgcggta atcaagcgac tgatggtgac gtatatctga ctacagcagc cccaggcgat
      181 atcactgaag gcgttgctgc taacgcatac ggcgcgcttc cggctccgtt ctctatcatc
      241 ctggattgct caggcgcggc tgatgtaact gatgccacta aggcttctct ggtaatggat
      301 tcgtcattct ctaacactac cggcactctt gacaatgaca ccacactgtc cgtggctggt
      361 gaaactgggg ctgaaaacgt gaatatcgcc atccatgatg ccgataccaa aactcaggtt
      421 aaaatcgatg gcgctgaaat tcatgaagcg tccttcaaaa acaaagttgc aacctataac
      481 tttatggcgt cttacgttcg tgccgatgct tctaaagaag tgactaccgg tcatgtaacc
      541 acgaacgcaa tgtatacctt tacttaccag taacaggaca tacggttatc actaataagt
      601 actcgtacct ttccttgagt tagcgtgctt atcagttatt gatctcatat aaccttcggg
      661 gtccaggaat tatttcaacg attccggggg ttcattcaat ttaattaaat tcaaagttga
      721 tttcattatc ttctacaggc aaggaacgct tatgttgtat gtaaaaaaaa gcctgaccgc
      781 catcgtatta gccagtgctg tatttagtac ctttagctat gcggatatta ttatctcggg
      841 caccagaatc gtttatgacg aaaataaaaa agacgtcagt atacgactgg aaaataaggg
      901 tacccgccca ttattagtcc aaaactggat agacctgggt aacgataacg acgatcccgg
      961 gagtattaaa gcgcctttcg tttctacccc cccggtttca cgcgttgagc ctaaacgtgg
     1021 gcaatcggta aaaattatgt atacccaggc cagcgcgctg ccgaaagacc gggaaagcgt
     1081 cttctggttt aacgtactgg aagtaccgcc aaaagcggat accagcaaag aagagaataa
     1141 aagcttactg caactggctt ttcgtacccg tatcaaactg ttctatcgcc caacaggact
     1201 aaaaggccag cctgctgaag cggcaaaaca actgaagtgg caaatagcga gcgaacaagg
     1261 ctacgcggta ctacgtgctg ataactcaac tccgtatttc gtctcattta atgacgctac
     1321 ctacactgca ggcggtaaac gttatgacgt tgaagccacc atggttgcgc ctttcagtaa
     1381 atcatccttc accgtgaaag gcttgtcagg cgctagcgcc ggaaaactgg agtatcacgc
     1441 cattaatgat tttggcggtt tgattgaagg ttccgtatcg ctgtaacgga ttaaccaaga
     1501 atcaggatga agaaatcggt gtaaaacttt ccacattcca aggccatgcc gaagaaaacg
     1561 atgctcgcag tttgctgtgc gctattttat agccagagca gtatttccgc tgaaagcgtt
     1621 gaatacgaca gttccttttt aatggggagt agcgcctcca caatcgatat cagcaaatac
     1681 tccgacggca acccaacgcc tgtcggaacg tatagcgtga aagtttttgt caacgaaaac
     1741 cccgtatcaa gcctgtccat accctttatc gatatcggca aggtcagtgc agaagcctgc
     1801 ctgacacaaa aaaatctggc gcagttgcat atcaaacagc cagaaatcaa tgcgaccaat
     1861 caaattctga aaaaagggga ggaagaagat caagattgtc tgaaccttcc cgtcgccatc
     1921 gcgcattcag aggtcaattt tgatatgggc gaacagcgtc tggatattac cgtacctcag
     1981 gcgtggctca ttgaaggtta tgacggctat gttgagcctt cgctgtggga agatggtatt
     2041 ccggcagcgc ttctgtccta ctcggctaac ggctatcaca gcaccaatgg cagcgccgat
     2101 aatgacagta tgtatgcggc gtttaacacc ggtattaacc tcggcgcatg gcgttttcgc
     2161 gccaacggca actataactg gacgaaagac tcaggaagct cctttgacta tcagaatcgc
     2221 tacttgcagc gcgatctgcc ttcaatgcgc tctcaacttg ttgtcggtga aacctatacc
     2281 acgggcgaaa catttgactc cgtaagcatt cgcggggctc gtctgtatag cgacaaccga
     2341 atgctacctt cgcagcttgc caactatgcg ccgattattc gcggcgtagc aaacagtaac
     2401 gccaaggtca gcataaccca gggcggctac aaaatttatg agtccacggt accgccaggc
     2461 ccctttgaaa tcagcgacat cagtccttcc ggctacggta gcgacctcat cgtcaccgtt
     2521 gaggaggccg acggcagtaa acgcaccttt agccagccat tctcctcggt tatgcagatg
     2581 cagcgcccgg gcgtcggacg ttgggatttc agcgccggtg aagtgaatga cgatgagctt
     2641 catgacaagc cctatatggc gcaaggttca tattactacg gccttaataa ctttttgacc
     2701 ctctatacag gtgttcaggg aacagataat aactatcttg ccgggttgct gggtgtcggc
     2761 ctcaacaccc ctcttggcgc atttgcactt gatgtcactc agtctcgtac agagatccct
     2821 gaggataaaa cctataaggg ccagagctac cgactgacgt ggaacaagct gattgaaccg
     2881 acggcaacct cctttaacgt agcggcatat cgttattcaa cgcaggacta cctgggcctg
     2941 aatgatgcgc tacagctgat tgatgacgcg aaacataaag acgcggacga tcgcaacacc
     3001 atgcttaact attcgcgcat gaaaaaccag gtcacggtca gcataaacca accgttgagg
     3061 tttaaggaag tcgactacgg ttcctttttc ctctcaggct cctggaccga ctactgggct
     3121 accaatgaaa gccgtaccga ctatagcctc ggttacggaa gaggtttttc gtggggcagc
     3181 ctcagtatca acctccagag atcctgggat gaagatggcg aaaaagatga ttcgctctat
     3241 atcaacttca acgttccgct ggagaatctg ctgggcggcg gtcgccgtaa gtcgggtttc
     3301 agctcactga cggcgcaaat gcgcactgat tttgacggcg ggtaccagtt gagcatgaac
     3361 agcaacggca gcagtgaaga ccacacgctg aactacagcg ttaacaccgg ctacaccatg
     3421 cagaaaaatg aaaagaacat caccgatgtc agcggctacg ccagctatca gtccccctgg
     3481 ggagatgtta ctgcttcagc ctctgccaat aatgacagca gccgacaata ttcgctcgcc
     3541 acaaccggag actttgtcct gcatggcggt ggagtgacgt tcactaacga taacttcggt
     3601 aatagcgatg ccatcgtgct ggtaaaagcc cctggcgcga aaggcgcgcg catcaatggc
     3661 ggcaacagca ccatcgatcg ctggggctac ggcgcgacga actcgctttc cgcctacaga
     3721 gaaaaccagg tcaatattga tatcgacacg ctggaaaacg atgtcgaact aaagagcacc
     3781 agtacaaccc tgataccgcg tgatggcgcg gtagtcttag ccagtttcga aactgaccag
     3841 ggacgctcgg tcattctcaa catgtcccgt aatgacggaa aagccctacc atttggcgca
     3901 gaagtctacg agaacgatgt gcagatcgac aacatgggcc agggcggtca ggcttttgtt
     3961 cgcggcatca gcgatgcagg cgaactctca gtacgctggt ttgaagaaaa ccagccagca
     4021 acttgtttag caacctttgc gttgccggca acgcaacaaa cggtagggtc cagccagacc
     4081 ttactgttag accacataac ctgtcgtgtt aataacctta aatcaaatgg aatagacaat
     4141 gaaaaggaat aaataccttt tagcagcctc tgtgctcgcc gtgatatttc cgcttaccag
     4201 tcaggcggaa aatatcaacg tcgactttac cgccaccgtg ttagccacga cctgcagcat
     4261 gtcaattgcg gcgttagatg gctcgaactt atcgggtgat gccaccagcg gctatacgct
     4321 gaacgtcggc gatgtcgggt tggataaaat tataaaaaaa tcagcggaat cgcagaaaaa
     4381 ctttaagttt gtcgcgaagg attgcagtgc cgctctgacc aaaatcacca ccacgcttgc
     4441 cagctccaca gatgccagcg gcaattttat caaaaaccaa tcagcggcaa gcggcgctgc
     4501 caccaatgtt ggcatgggct ttaagcgcaa aagcactacc gatgaaacct atttcacgcc
     4561 cggctcaggc tcatttagct ggacttccga cgagcgcgca gcaaacgaag tggaaatgac
     4621 ggtcgcgctg cgtgaactga ccgacggcgc gggtaccaca ggtgctttca gctcaaccgc
     4681 tacgtttaac ttcacttatc aataacaagg acgatgataa tgaaaaagca aatattgcgc
     4741 gtcgtgattt ttagctcgct gattgccacg ggagctggca tatcaacgat gacatatgcc
     4801 gatggaacca acagtctgga cctgaccgtg aacgccaata tcactgcggg tacgtgttct
     4861 gcatccgtgg ttgaaggtga taccattacc gatactatcg cttttggcaa cgtttacatt
     4921 tctgaagtat atgcaaaaag taaaataaaa cttttcaagt tacggttcag tgattgtgtc
     4981 ggtctcaaag ataaaaaagc taagttcaga ctagccccaa ataatgtagc atgcccgggg
     5041 agcagcggca ctgatgggca attcgcaaat gcctcgactt caacaacaaa ggcagcaatg
     5101 gtcgccatgg aagtatggac gacagaaacc cctggaggca ctggcgcggt aaaacttcac
     5161 tgctggtcga aaccagaaca aaccgtggat ttatctggtg caagtgtaac aacgcctgtt
     5221 gattttcctt taagcgctat gatggtcgct caaagcggcg gtacgcttca aaatatgaca
     5281 gcgggagatt tctactcgcc caccaccttc accatcactt accagtaatg gtgataccaa
     5341 tgagacgttt gcgcgaaccc acgctcgcca cgttattttc agggctggca acagccctgt
     5401 ttagcgcgac gctgtacgcc gataccaatg tgaatttcac cgccagcgtg cagaaggaca
     5461 cctgccagat aaagatagat ggcaatggaa cggtaaactt cgccaccata gcgcccgcct
     5521 attttgccga tggcattacc gcggaaaccg attatgaggg ggggaaagag ttcaccatta
     5581 agcttatttc ttgcccgatc agtgatggta aaataaccaa tgtcaccttt aatttcgcac
     5641 cactaaacgg gcagttctca cctgagaatc aacaagtttt tcctaatgac atcgctaccg
     5701 atgctggtgg cgtagacaat gtcggcgtgg tgattttcac caccgattca ccacgcacca
     5761 acgtgcttaa tacggatggt tcatcgcggg cgacttttgc tgccagcacc tacagcgaca
     5821 ccgtctggac cttttactcc agaatgcaaa aaatacgcag tgccgaaaaa gtgacgaccg
     5881 gtgaacttag cagccgtgta ctggtgaatg tctcctatga ataatcagga gattttatta
     5941 aacgaaagga tatcgttaat atgcttttaa aaaacacaac atggtttgcc gcctttttcc
     6001 tgatgatggc tatcatgtcc aactgttatg ccataaatac taccctggcc gttggcgact
     6061 acgcctccag tgaacatgat ggcccaagcg gggattcggt attcactgat aacagccaca
     6121 attttgggca gaccatcgcg attcataagg aaacggcgct gcgccagatt accgttttta
     6181 actggtccgg catccagtac gttatggaga tgttctgtaa cggcagcggc aaccacacct
     6241 accttcaact gacccataat tatatctctg ctggcaaaag ctataatgga catccgctgt
     6301 ataaaacctc aattcccggt ttttatttca ccattgagat gaccttcctt cagccagcag
     6361 agaatatgac ctcaagcacc ttctggtttg ataagacctc aacgccgatc accagcgagt
     6421 tcacggaatt tccgtcagcc tgctccagaa caaatgttta tagcaacctt ggcaaattaa
     6481 tgtatggcct gaaaatctat gcctatgtcg actctgactt cgcgccgacg gaagcccagc
     6541 ttcaaagctt tacgctgtct aaaaacggcg actccgattt ctacattgat aacccgggca
     6601 gcggattatc aaactataaa atgaagttta acctcgccgc cacaggactt aaggccgtct
     6661 ggccaacctg ctcggccagc accattagcg gcaccaatgt ttcgggatca acggttaagc
     6721 tgggtagctt ttatccaaag cagattatgg aagggctgtc gccgaccaag ttccagatca
     6781 atctctcctc ctgccagtac atcaataata ttgaagttaa attggccagt aataatgtcg
     6841 ggacgaaaaa cacctcgcta ctaaccaaca attcaaccag caacacgaaa gccagcggca
     6901 ttggcgtttt aattgaaggt ttgaaaagta gttcgagcgc ccagatggta ctcaaaccta
     6961 acgactcaag ctcaatttat aaagatacca ccaataacac cggagacggc agcccggtag
     7021 gaagcgcgac aaaatcgttg tatttccagg caaccttaaa gcccgatggt gacaatccaa
     7081 caatcaatcc aggtgatttc aaagccaccg ctcaattttc aatcacctat ccgtaaaatc
     7141 ctataacgaa ccgcaacgca atttgcccag aaaaggctaa cgcttgcggt tctcttcccc
     7201 tacaatgcgg ccattctatt catcaatatt atggccggag aggttatgag caaacccact
     7261 actatcgctg tgctgcagaa atgcaaacaa gagaaaaagc gcttcgccac cattaccgcg
     7321 tacgattaca gcttcgccaa actcttcgcc gatgaaggca tcaatgtgat gctggttggc
     7381 gactcgctgg gcatgacaat tcaggggcac gactccaccc tgcctgtcac cgtggaagat
     7441 atcgcctacc acacccgcgc ggtacgccgc ggcgcgccga actgcctgct gctctccgac
     7501 ctgccgttta tggcttacgc cacgccggaa caggcgtttg aaaacgcggc tatcgtgatg
     7561 cgtgcggggg ccaacatggt caaaatcgaa ggcggcgcat ggttggttga tacggtgaaa
     7621 atgctcaccg aacgcgccgt gccggtgtgt ggccatctgg gattaactcc ccagtcggtg
     7681 aatatcttcg gcggctataa aattcagggc cgcggcgatg ccgggcagat actgctggat
     7741 gatgcgctgg ccttagaagc agcgggcgct caactgctgg tgctggagtg cgtgccggtt
     7801 gaactggcga agcgcgtcac ggaagcgctg tcgattccgg tgatcggcat cggcgcgggc
     7861 aacgtcaccg acggtcagat cctggtgatg cacgatgcgt ttggcatcac cggcggtcat
     7921 attccaaaat tcgcgaaaaa tttccttgcc gaggcgggcg acatgcgcgc cgccgtacgg
     7981 cagtatatgg cagaagtgga gtccggcgtt tatccgggcg aagaacacag ctttcactaa
     8041 tttttctgac cgtgccggat agcgacgcga cgcgtcttat ccggcctaca gatcctcaac
     8101 ggatgtaggc ctgataagcg cagcgccatc gggctggatc atcaagcaac tcaaggagtc
     8161 ttgttgtgtt aatcattgaa accctgccgc tgctgcgcca gcatattcgc cgtctgcgtc
     8221 aggaaggcaa acgcgtcgca ctggttccca ctatgggcaa cctgcacgac ggccatatga
     8281 agctggtcga tgaggcaaaa gcccgggccg atgtggtcat cgtcagcatt ttcgtcaacc
     8341 cgatgcaatt tgatcggccg gacgatctgg tgcgctatcc gcgcacgttg caggaagatt
     8401 gtgaaaagct gaacaaacgc aaagtcgatt atgtctttgc cccagccgtt gaggaaatct
     8461 accctcaggg gctggaagga cagacatacg ttgacgttcc cggcctctct accatgctgg
     8521 aaggcaccag ccgtccgggc cacttccgcg gcgtctcgac catcgtcagc aagctgttca
     8581 accttatcca gccggatatc gcctgctttg gcgagaaaga tttccagcag ctggcgctga
     8641 tccgcaaaat ggtggcggat atgggttatg acattgagat cgtcggtgtg ccgattattc
     8701 gcgctaaaga cggtctggcg ctcagctcac gtaacgctta tctgactgca gagcagcgca
     8761 aaattgcgcc gggtctatac aacgtgatga atagcatcgc tgaaaaactg attgcgggta
     8821 atcgtgagct gcaagagatt attgccattg ccgagcagga actgaatgaa aaaggcttcc
     8881 gtgccgacga cattcaaatc cgtgatgccg acacgctgct ggagctgacg gaaaccagca
     8941 aacgcgcagt gattctggct gccgcctggc tgggacaggc gcgtctgatc gataatcaaa
     9001 gcgttacatt agcccagtag acaggggtta aaaatcgggc aatactgcct gagaatttcc
     9061 aaagcaggct acaagcgcct gcttagccaa gataaacgac agggtataga agttatgatt
     9121 cgcaccatgc tgcaaggcaa gctccaccgc gtaaaagtca cgcaggcgga cctgcactac
     9181 gaaggctcct gcgccattga ccaggatttc cttgatgcct ccggtattct ggaaaacgaa
     9241 gcgattgata tctggaacgt gaccaatggg aaacgtttct caacctatgc gattgcggct
     9301 gaacgcggct ccagaatcat ctcggtgaac ggtgcggcgg cgcactgcgc tgaagttggc
     9361 gacattgtga ttatcgccag cttcgtcacc atgtctgatg aagaagcgcg tacatggcgt
     9421 ccgaaagtgg cctactttga aggcgacaac gaaatgaagc gcaccgcgaa agccattccg
     9481 gttcaggttg cctgatagtc cttacccctg cggctgattg actatcagcc gcgacatcgt
     9541 ttccagcgaa tccgtgcgta aaatatacag ccttttgagc agcatcggat tatctcccgg
     9601 cttcaccttc cctctcaccg tggtgaccgc cagatggaaa ccggcgtctt ttgctgcttt
     9661 gatcgcggtc gcgttatagc cgccaaaggg ataagaaaga taaaatacgt gcggagtaaa
     9721 ctgtgtgagc gcccgccgcg aacgttcaaa atcaaacaga atattatggt aactgcggct
     9781 atataaaatc gggcggcgat gcccgtctac ccggtgtaaa aaatgggtat gcgactgaaa
     9841 atcaaaaaca tcgcttatct tgcgcaattc ggacacgctc ataaattgca gcgacctggg
     9901 attccatttt tgcggatggc gcttaatacg cgatgagata ataaatgccg tcgctttcat
     9961 atcgtactgc tttaataccg gatatgcata gcgactcacc gatttaaggc catcatcaaa
    10021 ggtgatagcc accgcgcgcg ccgggaaatt agcgcggtta tagatgtaat cctccagttg
    10081 gtacatcgtc aacgtggcat agccgcgatc gcgaagccag gtcatttggt tgctgaatgc
    10141 ccgaaccgaa gtcgtggtgg aggtatggcg aaaacgggta ttctcttcat cacgtaaaat
    10201 gtgatgatag gtcaaaatcg gaatgccgtt gtcttcctgc gcatccatgg cgttgacata
    10261 agccagcctg tcgccaatac ggatctgatt ccaggtttga tgtagccggc ctttcagctt
    10321 gctaataatg gggtaacgca aattatccac caatacgcca aacggggcgc tactgatgtc
    10381 cggcgcgtta tacaccggcg tgtccttcca ggtcaccaga ttctgattgc tgagcggctt
    10441 gttaagatcg cccagcccat cttccacttt ttgttttccc tgcacgggtc ccagatggcc
    10501 tttatcgata aaccccacac cgaagccaaa tttaaaggca taataatcaa ccgcaacagg
    10561 cgttacggaa agaatttgtc cggcgcggat attccctacg gtcaccattt tgtcgccaat
    10621 ctgcgaccag atggcggcat ctttcgtcgt ttgcatataa cgagcgggca aggcagccaa
    10681 cacattaccg gcgaaaaaga acagcaagat aagaacaaca cgcataacca tatatcataa
    10741 ccgaggcgaa aaaacgccgt tattgtagca aaagcgtcgt caatggtatt gatcaaaact
    10801 catacaaatc atgcagcaat acaaaaggcg gatttttctg ctgctgatgc cagagactgg
    10861 tgacatccgg cgcgccaagc gcgacaatct ggtcacgaaa tgctgaactg ctcatcgact
    10921 ctcgcaaagg aatcatttcc tctatcaatg aatagctaat gcctgaaata acttcacatt
    10981 gaggatgttt atggctcatc agcgacgcta cacgataagg cgccgcgccg gaaatgtcgg
    11041 ttaaaaatat cacgccttca ccggaatcgg tggcatggag ggcatcacac atcatgcggc
    11101 tcagcatgtt tgagctcaga ccgcgccaaa aattgaccgc ccggcattgc gccagcggac
    11161 cattttttct ctccaggcga tcaagcatat cctgtgcacg atcgtcatgg caggtaatca
    11221 cccaacctaa cataacctac ctccttagca ggcaagtagt ttatcagggt gatcaatcgg
    11281 gaatgatgac agccgtcaaa agtctcctct tccctccagg agaagaggag aatcgtatca
    11341 gctacgcaaa ccgcgtccgc gctggatcag cgaccaacac agcagataga aagtagcgat
    11401 aaagatcacc agtacgccaa acgttgtcac cagcggcaca tcatggatac ccagaaaacc
    11461 ataacggaaa ccgctgatca tgtagacgat cgggttcagg tgcgacaacc cttgccagaa
    11521 cggcggcagc agcgtcagcg agtaaaatac cccgccgagg taggtcagcg gcgtcagcac
    11581 aaaggtcggg atcagactga tatcgtcaaa ggttttggca aacacggcgt tcagcagtcc
    11641 ggccagcgag aacagaatcg cggtcagaat cagcgttagc gcgacaaata cccaggaatg
    11701 cacctggaaa ggcacgaaaa agagcgaaat cgccgtcacc agaatcccca cgcacagccc
    11761 gcgcgccacg ccgccgccga caaatccggc gatgatcacg tgcgttggca ccggcgcgac
    11821 cagcagttcc tcaatattgc gctgaaactt ggcgctaaag aacgaggagg ccacattggc
    11881 gtaggagtta gtaatgaccg ccatcataat caggcccggc acaataaatt gcatatagct
    11941 aaagccatgc atttcgccga tgcgcgaacc gatcaggtta ccgaaaataa taaaatagag
    12001 cgtcatggtg atgacaggcg gcaccagcgt ttgcacccag atccgcataa agcggtggat
    12061 ctctttcgcc cagatgcttt taagggcaac ccagtaaagc tgcatcatgc gcgatctcct
    12121 tgtttttcat gcaccagcga cacaaacagt tcttccagac ggttggcttt attacgcata
    12181 cttaatacct gaaccccctg ctcgctcagt tggctaaaga cgctgttaac cccctgctcg
    12241 cgtaacactt ccacctccag agtcgaggta tccaccagac gatattgata acccgtaagc
    12301 ttaggtagcg ggcttttggg cgctaaatcc agaataaatg tctccgattt cagctttgaa
    12361 agcagatttt tcatggaagt attttccacc agctcgccgt gctgaataat accgatattg
    12421 cggcacagca tttccgcctc ttccagatag tgggtggtga gaataatggt ggtgcctttg
    12481 gcgtttaagt ctttcaggaa cccccacatt gagcgacgta attcgatatc gacgcccgcc
    12541 gtcggctcgt cgagaatcaa tagtttaggc tcatgcatca atgcgcgggc gatcatcagg
    12601 cggcgtttca tcccaccgga cagcatccgc gcgcgttcat gacgtttttc ccacagatcg
    12661 agctgtttta aatacttttc gctacgtaaa accgcctctt tatgctccac gccgtaataa
    12721 cccgcctgat tcactacgat ctgttgcacc gtttcaaacg ggttaaagtt aaactcctgt
    12781 gacaccagtc caagctgtcg cttggcgtta accacgtctt tttccaggtc gtaaccaaaa
    12841 acgttaacgc gcccggacgt tttattaacc aatgagctga taataccgat ggtggtcgat
    12901 ttccctgctc catttggccc cggaagcgcg taaaaatccc ccgcttcgac ctgcaaatct
    12961 atgccgcgca gcgcctgaac gccgccggga taggtttttt taagttgttg aagttccagc
    13021 gcaatggtca taaattctca cttactttac gttcttacac tttatatatg gtttaaataa
    13081 ttacggagtt gccctatatt agcccaacgc acttatttgg ttacaggtcg ttaacttcca
    13141 tgaaagacat agatacactc atcagcaaca atgcactatg gtcaaaaatg ctggtggaag
    13201 aggaccccgg attttttgag aaactggcgc aagcgcaaaa accgcgcttt ctatggattg
    13261 gatgttccga cagccgcgtt cccgcagagc gtttaaccgg gcttgaaccg ggcgaattgt
    13321 ttgttcaccg taatgtggct aacctggtta ttcacaccga tctgaactgt ctctccgtgg
    13381 ttcagtatgc ggtagatgct ctggaagttg agcatattat catttgcggc cactccggtt
    13441 gcggcggtat caaggctgcg gtagaaaacc ctgagctggg cttgattaat aactggctgc
    13501 tgcatatccg cgacatctgg cttaaacata gctcgctgtt gggaaaaatg cccgaagagc
    13561 aacgtctgga cgcgctctat gaattgaacg tcatggagca ggtctataac ctggggcatt
    13621 ccaccattat gcagtcagcg tggaaacgcg ggcagaatgt gaccattcac ggctgggcgt
    13681 acagtatcaa tgatggcctg ctgcgcgatc ttgacgtcac cgccaccaac agagaaacgc
    13741 tggagaacgg ctatcataag ggtatctccg ccctaagtct gaaatacatt ccccaccaat
    13801 aagccattag ctataggccg gataagtcgc tttagcgacg ccatccggca tttctgcgct
    13861 tactcgtcca gcagcaccac tttaccaaca tacggtagat ggcgataacg ctgggcgtag
    13921 tcgataccgt aaccgactac aaattcgtcc ggaatcgaaa agccaacgaa ctcaaccggc
    13981 acgtccactt ctcggcgaga cggcttatcc agcagcgtac aaatcgccag cgatttcggc
    14041 tcgcgcaggc ccaggatttc acggaccttc gacagcgtat taccggaatc aataatgtct
    14101 tcgacaatca gcacgtcttt accacgaata tcctcatcca gatctttgag gattttcacg
    14161 tcgcgggtgg tggacatacc gctaccataa ctggaggcgg tcataaaatc gacttcatga
    14221 ggaacctgaa cttcacggca caggtccgcc ataaacataa atgagccacg caacagacct
    14281 accagcacca tttcactgtc gctgtcttta taacgttcgg taatctgacg acccagctcg
    14341 gcaatacgtg ctttgatctc cgcttcgggg atcatgactt caacagtatg tttcatattt
    14401 ataaccatat gatttaaaaa caaatcactc aatgccggtg actaataacg ccgcattgac
    14461 gcgcaaggca cgcagtataa cagcaaacgt attcattcgc ggcatttgat aagaaagctc
    14521 attttgtgat gacgatcaca catgttaatt cctatgctta attgctacta aaaaattaac
    14581 aatttgggat ggtgtctttt tatggcagaa aataacgcac gatcgccacg attactcgtg
    14641 acgctgacgg ccctctttgc agcactttgc gggctgtatc ttcttatcgg aggtgtctgg
    14701 ctggttgcta ttggcggttc ctggtactac cccatcgcgg gcctcgtgat gctggttgtg
    14761 gccggattgc tatggcgcag taaacgtgcc gcactgtggc tgtatgccgc cctgctgctg
    14821 gcgacaatga tttggggcgt gtgggaagtc gggttcgact tctgggcact cacgccgcgt
    14881 agcgatatcc tggtgttttt cggcatctgg ctaatattgc cgtttgtctg gcatcggctg
    14941 gtggttcctt ccagcggcgc agtggcggcg ctggtcgtgg cgctgctgat tagcggcggc
    15001 attctgacct gggctggctt caacgacccg caggagatca acggtacgct tcgcgccgac
    15061 gccacgcccg ccgcaacaag ttcgtcgatc gccgacgaag actggccggc ctatggacgt
    15121 aatcaggaag gccaacgcta ttcgccgctg aaacagatca ctgcggataa cgttcaccaa
    15181 ctgaaagaag cgtgggtctt ccgcaccggc gatctgaaac aacccaacga tccgggtgaa
    15241 atcaccaacg aagtgacccc gataaaagtc ggtgatacgc tttatctgtg tacagctcac
    15301 cagcgtctgt tcgcgctgga cgccgccagc ggtaaagaga agtggcattt tgatcctcag
    15361 ttgaagaccg attcgtcttt ccagcatgtg acctgccgcg gcgtctctta tcatgaggcc
    15421 aaagcggata ccgcctcgcc ggaggtcatc gccgactgtc cgagccgcat tatcctcccg
    15481 gtcaacgacg gtcgcctttt cgcggtgaat gccgaaaccg gcaagctgtg tgaaaccttc
    15541 gccaacaaag gcgtcctgaa tctgcaaacc aatatgccgg ataccacgcc gggactgtat
    15601 gaaccgacgt cgccgccgat tatcaccgat aaaacaattg tcattgccgg ttcggtcacg
    15661 gataacttct ctactcgcga aacgtccggc gttatccgtg gttttgatgt taatagcggt
    15721 aaactactgt gggccttcga tcctggggcg aaagatccga acacgattcc agccgatgag
    15781 cacgctttta cctttaactc gccgaactcc tgggcccctg ccgcctatga tgcgaaactg
    15841 gatctggtct atctgccgat gggcgtgacc acgccggata tctggggcgg taaccgcacg
    15901 ccggagcagg aacgttatgc cagctccatc ctggcgctga atgccaccac cgggaaactg
    15961 gcctggagtt atcagaccgt ccatcacgat ctgtgggata tggacctgcc ggcacagccg
    16021 acgctggcgg atattaccgt tgacggtact accgttccgg ttatctatgc accagcgaaa
    16081 accggtaata tctttgtgct ggacagacgt aatggcgagc tggtcgtgcc cgctccggaa
    16141 aaaccggtcc cgcagggcgc ggcaaaaggc gattatgtcg ccaaaactca gccgttctct
    16201 gatttaacct tccgcccgaa aaaagatctc tccggcgcgg atatgtgggg cgcgaccatg
    16261 ttcgaccaac tggtgtgccg cgttatgttc caccagttgc gctatgaagg tatcttcacc
    16321 ccgccatccg agcaggggac attggtattc cctggcaacc tggggatgtt tgaatggggc
    16381 ggtatttccg tcgatccaga ccgtcaggtc gctatcgcta acccgatggc gctgccgttt
    16441 gtctcgaagc tgatcccacg cggcccgggt aatccaatgg aaccgccgaa agacgcgaaa
    16501 ggtaccggta cagaagcggg tattcagccg cagtacggcg taccgttcgg cgtcacgctg
    16561 aatccgttcc tttcgccgtt tggtttgccg tgtaaacaac cggcctgggg ctacatttcc
    16621 gcgttggatc tgaagaccaa tgaaatcgtg tggaagaaac gtatagggac gccgcgcgac
    16681 agtatgccgt tcccgatgcc ggttccggtg ccgttcaaca tggggatgcc catgctgggc
    16741 gggccaatct caaccgccgg taacgtgctg ttcattgccg cgaccgccga caactacctg
    16801 cgcgcttata acatgagcaa cggggaaaaa ctgtggcagg gacgtttacc cgccggaggc
    16861 caggcaacgc cgatgaccta tgaggtaaac ggtaagcagt acgtggtcat ttctgccgga
    16921 ggccacggtt cgtttggtac gaagatgggc gactatatcg tggcctatgc tttgcctgac
    16981 gacgcgaaat aaccattaat gcccggcgta tgccgggcat tgtgccgggt agcggtttcg
    17041 ccttacccgg cctgcgtcac agacatcgat tagaccgtaa atcctaacat cattcccgta
    17101 tcttcatgtt ctaacagatg acagtgcgcc atataggcat gttccttcgg cgcgtcgtga
    17161 tcgaacttga ccagcacttc gctgataccg ccctcaacgc gtaccgtatc cttccagccc
    17221 gttctgtgcg ccgctggcgc tttgccgttc tctgacaaaa tacggaactg ggtgccgtga
    17281 atatggaaag gatgcagcat catgtcaccc acgccggaaa tcacccaacg ttcatgtcgg
    17341 cctttttgcg ccgcgaacat cggtttgttc atatcgaaga cctggccgtt gataaagtta
    17401 gcgttatgga agtcgaattt tccgccgtga ttcatattgc ccatcgcgcc atgattcatc
    17461 ccgctgtgat ccatgttgcc atgatccatc tcgccatgcc ccatattgcc gccctgcata
    17521 tgcgcgttca tgctgtcatg atccatgccg ctcatcgcct gagcgccata tttcttcatc
    17581 agcatttgca tccccatcat atcaaggcgc gggtccatcg acagtttcag gttgcgcacc
    17641 gtcagccctt ccagcgacgg cagcgccggc atcgtcgtca acgtatccgg cagcgtaccg
    17701 gaggcggtaa tccgcagcgg ctggatacgc atcaccggat gcggtttatc aaacggagcg
    17761 atcgccattc ccatctggct gaccggcagg gtcaccagat caaaggcttt cccgtcgctg
    17821 atatccacca gcacttcaaa acgctcgccc attaataacg gcagttcggt gactttcacc
    17881 ggctccgcca gcaggccgcc gtcgctggcg atcacataaa gcggacgatt atcgctggcg
    17941 gcgatattca gcgaacgcgc attacagcca ttcagcaagc gcagacgtag ccagcctttc
    18001 ggcgcggaat gctgcggata gatagcgcca ttggtcagca gcgtatcgcc aaaccagccg
    18061 acggcggcgg tcataatatc cagttgataa tcaatctggc catcggcgga gaagcgtttg
    18121 tcctgaatga tcaccggcac atcgtcgata ccccactgtt tcggcaggcg caatttgcga
    18181 atctcgtcat cttcaatcag caccagtccg gcgaggccca tcgccacctg gcgcccggtt
    18241 ttgccgtgtt tgtgcggatg aatccagcag gtcgcggcgc gttgctgcgg cgtaaacgtc
    18301 accgtgcggg ttccgccagc gggaataatc ccctgcgggc cgccgtcaac gatgcccgga
    18361 atctccagac catgccagtg aagcgtcgtg tcttcggcca gttggttatg gatatcaacg
    18421 gtcacgcttt ttcctttgtg aagctgtacc gctggcccca gcaaattacc gttgtagccc
    18481 caggttgtcg cgttcttacc ggcgaatgtc gactgtccgg ctttaacaat taactgcata
    18541 cggttgctcg catctgccgt taacaggtca ggaataggca acgcgggacg ttcggcggca
    18601 aaagcggcgc ggctccacag cggcagcgct gatgcaaccc ccagcgccac tgaatatttt
    18661 aagaaatcac ggcgtaacat aatcatttcc ttataatgaa caggcgggtg tctaagctta
    18721 gaccctgccc taacgggaag gtcaagccag caacacgtct ttaccgttcc tgacagcaat
    18781 acaacaagaa tgaaaacgcc gcgaccaatc ctgataataa aagtcgtcgc tacgttctca
    18841 gtatgctaac gttgactttc cctgatgccg tggtagaagc aatgaagacg tttttcagac
    18901 ccgtgttgtt tggcagcctg atggccttat gcgcaaatag ctatgcgctt actgaatccg
    18961 aagctgaaga tatggccgat ttaacggcgg ttttcgtttt tctgaaaaat gactgtggtt
    19021 accaaaattt acccaacagt cagattcgcc gtgcgctggt cttttttgcc cagcaaaatc
    19081 agtgggacct gagtaactac gacaccttcg atatgaaatc gttgggcgaa gacagctacc
    19141 gcgatcttag cggcatcggt attccggtcg ctaaaaaatg caaagctctg gcccgcgatt
    19201 ctctgagcct gttagcctac gttaaataat cctccgcgat cctattgctg aaataatgac
    19261 cgtgcatcca cggtcattgt tagctatgat gttgcgccct ttttttacgg gtgttaacaa
    19321 tggaggtatc agccaatggc cgaaaatacg atgtggcatg aaacgctaca cgaccagttt
    19381 ggtcagtact ttgccgtaga caacgttctg tatcatgaaa aaaccgatca ccaggattta
    19441 atcatctttg aaaacgccgc ttttggccgc gtgatggcgc tggacggcgt ggtacagacc
    19501 accgaacgcg acgagtttat ttatcatgaa atgatgaccc atgtcccgct gctggcgcac
    19561 ggtcatgcga aacacgttct gattatcggc ggcggcgacg gcgcaatgct acgtgaagtt
    19621 acccggcata aaaacgtcga aaccatcacc atggtagaga tagacgctgg cgtagtctcg
    19681 ttttgccgcc agtatttacc caaccacaat gccggcagct acgacgatcc gcgctttacg
    19741 ctggtgatcg acgacggcgt gaatttcgtc aatcagaccc atcagacctt tgatgtgatc
    19801 atttccgact gtaccgatcc gataggcccc ggcgaaagcc tgtttacccc cgccttttat
    19861 gaaggctgta agcgttgcct gaatccgggc ggcatttttg tcgcccagaa cggcgtgtgc
    19921 ttcctgcaac aggatgaagc gctcgacagc caccgcaagc tgagtcatta cttcagcgat
    19981 gtcggcttct accaggcggc gattccgacc tattacggcg gcattatgac cttcgcctgg
    20041 gcgacggaca acgacgctct tcgccacctg tcgagcgaaa ttattcaggc gcgttttcat
    20101 gccgccggcc tcaaatgccg ctattacaac tcggctattc atgccgctgc atttgcgcta
    20161 ccgcaatatc tacatgacgc actgtccgca cagtgacgtt aaggaggtga taaaaattga
    20221 aaaagctgaa actgcatggc tttaacaatc tgacgaaaag cctgagtttt tgtatttacg
    20281 atatctgcta cgccaaaacc gcagaagagc gcgatggcta tatcgcctat atcgatgaac
    20341 tctataacgc caaccgactg accgagatcc tgtcggagac ctgctccatt atcggcgcga
    20401 acatcctgaa catcgcccgt caggattatg aaccccaggg cgccagcgtc acgattctgg
    20461 tgagcgaaga gccgatcgac ccgaaactta tcgaccaaac cgaacatccc ggcccgctgc
    20521 cggaaaccgt ggtggcgcac ctcgataaga gccatatctg tgtgcatacc tatccggaaa
    20581 gccatccgga aggcgggctt tgcacctttc gcgccgacat cgaagtgtca acctgcgggg
    20641 tgatttcacc gctaaaagcg ctcaattacc tgatccacca gctagagtct gatatcgtca
    20701 ccatcgatta ccgcgtgcgc ggctttacgc gcgacgtcaa cggtatgaaa cactttatcg
    20761 atcatgagat taattccatt cagaatttta tgtcggaaga tatgaagtcg ctgtatgaca
    20821 tggtggatgt aaacgtgtat caggaaaata ttttccatac caagatgctg cttaaagagt
    20881 tcgatcttaa gcactatatg tttcacacca aaccggaaga tctcactgaa accgaacgcc
    20941 agcagatcac cgccgcgctg tggaaagaga tgcgcgagat ttactacggc cgcaatattt
    21001 ctgcggtctg attcaccact ggcagcgcct gacggcgctg tcactccggc tgcaccagcg
    21061 ttagcgcaaa agcgcgccct tttagttcaa cctgcgctga cggcggcaga ttgacgtcgg
    21121 taatcacatc attaaagcgc tcaagcggca ccacattaaa gagcgaatgc gcgccgtact
    21181 tactgctgtc cgccagcaac actttgcgct gcgcattagc aataatctcc tgtttaagcc
    21241 cggccttatc ttccgttggg gtcgtcacgc ccgtttttac cccccatgaa ttacagctca
    21301 taaacgcgat gttcggataa acgctgcgca acagcttgcg cccatgctca ccgatacagg
    21361 actgactgct gtcatcgata cgaccgccga caatcgtcac ttcaatttgc cggaactcag
    21421 ctaaaaacag cgcaatatgc agatcgacgg tgatgacccg cagcggaaga tgggttaagc
    21481 atttcgccag ttccatcatt gtcgtaccgg catccagcac gacggcatcg ccagcattga
    21541 ccagcgatgc ggcaacgcgt gcaatcgccc gtttttcagc gggcgatcgc agttgttttt
    21601 cattggtggt gggctgggcg ggttcaaaac gccgcagcgc cacgccgcca tgactacggc
    21661 tgatcacgcc ctgctcatcc agcttgatca aatcgcgacg gatagtggct ggcgatgcgt
    21721 caaccgcctc aaccagctgt tctaccgtaa ccagcgtatg gtttttcaga tacgccacaa
    21781 tgagatccag acggtgttgt cctttcataa cagggaatta tgccagttgc attgccagtt
    21841 tgatcgatac ggccatgctc tcagattttg cttttcccgt ccaggcgata tcaaatgcgg
    21901 tgccatgatc ggcagaggtc cggataaacg gcagccctgc ggtgatattc acgccatcat
    21961 aaaagccaag caatttcaac gggatatgcc cctggtcatg atacatcgcc accaccatat
    22021 catactgtcc ctcataagcc tggagaaata cagtatccgg cgggcacggc ccataaacgt
    22081 ccataccttt tgcgcgggca tcggtaatgg ctggcgtcag gatacgcgtc tcttcatcgc
    22141 caaacagacc attctcgccc gcatgaggat tcacgcctgc cacggcgata cgcggtttaa
    22201 cgtaacccac acgcttgagg aaagtatcag caataccaat caccgtttcg acacgcgtgg
    22261 tacttaacgt atcaaggaat ttacgcagcg cgatatgcgt tgaaacgtga atcactttta
    22321 gtttatcggt gtaaagtacc atcgcgtaat cgcggctatg ggtcagagtc gcgagcagct
    22381 cggtatggcc cggatagttg tgccccgcca ggtgcagcgc ctctttattc agcggcgcgg
    22441 tagcgatagc ctgtacgtcg ccccgtaacg ctaactcggt ggcgcgcttc acgcagcgat
    22501 acgctaaatc ccccgcctgc gcctgaactt tcccggcctc cagcgcctcc ggctgcgcca
    22561 gcggctcatc aatcacatga atgatgccgg gcgcaaaacg cgcttcggcg acccgttcaa
    22621 tggcccgtaa ctcgacgttc ggcgtgatgc ccttcgcctg taaacatttc aaggttgcga
    22681 ggcatccaat caccaccagc ggcgcgccgt tgagaccgtc ttcacttagc gctttaacaa
    22741 taatttccgg cccaatgccc gctggatcgc ccatggtaat ggcaacggtt ttagtctcca
    22801 caatacatct cctcaatata ataaagcgcg tcacacaacg tactgtctga accgaatccg
    22861 cccgctttgg taatgaccgg cagatcgtca atttcgctgt ttacaaacgt tccacaggga
    22921 atacagggcg ccacctcgct ctgaatgcga taaccttcag cgccaagcgc gccggcgacg
    22981 gcggtagcga tatcgccgcc ggtcagaaac agcccgccaa tccgcgcctg ctcgataata
    23041 tttaacgtga cgacgccaag ccgatgactc agtcgctcgc ccaattgctg acggctcatc
    23101 gcggattttt cgcacagcgc gtcgattaac tgtcgatctt ctgcgcgacg gctggtgcgt
    23161 aaaatcgtat gtcgatgctg acttaacagc gcgcaggcct gctctacgac agacgcgatt
    23221 tcctgctccg cgctatccga caccatgcgc gcggcatcga tatccacgac ctccgcacgt
    23281 ccccggcaca gcgcattatc cacctgacgt cgcgtggctt cgctcatcga accggctacc
    23341 accagtaccg gtagccgctg ccggtcttgc ataaaaagtt caaccggcaa cgcattcgcc
    23401 agaccagctg cgccgacgag cagcggcatc gacggttgtt cgcacgccgc ttgcgcaatc
    23461 aacgtcaggt cccgctcttc taccgcatcc acgacgataa tcccttcgcc ctcagccgca
    23521 taagccgtaa gtaaggcgct taacccgccg cgtcggacat cctgtaaaaa gacttcatac
    23581 acagggatct cactttgcaa cgccactatc tcggcaatac gggaagagac aatgggcgtt
    23641 ttcggatcgc tagcaaattc ggtttccagt agcggggcgc cattaaccag acattttcct
    23701 tcaagcgtcg tgcgtccggc cgcagggatc gcagcagcga taacggccag ttttcgctga
    23761 ctggcgcgca tagctgccgt cacttcggcg ccgatattgc cgcgaaatgt ggagtcgatt
    23821 tttttgtaca ccagcggcgc tggcgatgtc tcacaccacg gggaaagcgc ggcataaacg
    23881 gcagatgccg cctgatctgc gggcatcgcc cggctttcgg tgttaatgac taacacatcg
    23941 gcgcggcggg acggtttttg cgacgcgctc aacatgactt ccgttctcgc ccccttcttc
    24001 gccaactgga cgccggtatc attcgatccg gtaaaatcat cggcgataac catcattttc
    24061 atgcgttttt ctccaaagaa gcctgacgcg cctgtttttt cgcaacccag gaggtcaaca
    24121 ctggcgtcag gattgccgtg gtgatcaccg aggcggcaat cagcggagcg gcagcagcgg
    24181 ccacctcggc gagcgaaggg tcggcctgcg caatagccag cggcgtcgca acggcattac
    24241 ccgcagtgct ggaggccgcc gccccggcaa tgccagttcc gccaaccaga cgatctgcgc
    24301 gaatattaaa gaaaccgcca acgaacgttg tcagcacgcc gagcagaatt ccggcaagtc
    24361 cgccttgcag taacatttcc aggttgatgc ccgcccccag cgcaaaagca aagaaaggaa
    24421 tgagcagcgg gccgcctttg gtcaaaaaat cgcgcatatg aggatcaaga ttgccgagga
    24481 tcatgccgac aaccagcgga accagcaccg ccaccagcgc cataatggga atgttcgcca
    24541 tccctgccgc gcccagcgca atcatcgtaa agaaagggcc atcattaaga gacaaaatag
    24601 agatagcgcc gacgtcgcgc tcattgccga attcgcctac caacgcagca taaagtccgc
    24661 cattcgaatt gctcatcgcc gcgataatcg ccacgccgct caggccaaaa ataccctccg
    24721 cgccgaaaag atgctccacg cccaggccaa tgccgatggc gacaagcaac ttagtgagcg
    24781 taatcgtccc gccctgcaat aacgcctggg gcgcggcttt cacactgata ccggctccca
    24841 tacacagcag aaaagcgcca atcagcggcg ccgcgccgtt tttaaataag gcagtggtaa
    24901 aaccgccaat ctcaagcgcc tgcggggcga aggtgttaat gactgcgcca ataacgagcg
    24961 gtacgaccat catgccgccg ggtacgcgct ctattgcttt tttgatgttc atggtcttac
    25021 cgcctgttgc ttgttgtgat tgaataaaat cataacgatt atattcaatc aaattaagat
    25081 cacaaacgcg tcagatcaca gttttaaaat gattaataaa aatcaaaaaa tcattctgca
    25141 ataaaaaagc cgggatactc ccggctggaa tgtgtggtga tttcgtttcc actaccgccc
    25201 ccaactgtcc gtcgacaggc gttgcggggc aataacgaag agagggtcag gctttactga
    25261 cgaattcccg atacgcggcg acgacccgca gaaaatcctc catgccgcac agggataaac
    25321 tctcttcatc gtaataactc atcccctctt ccatctcatc gccggaaaaa tccagctgat
    25381 tggcgcgaat catcacttct tcgccgtcca tccagatcgt gtactcatgc cctgctcgtt
    25441 gccaggaacg ttcgctgcct ttgaccgtac gcgcggcttg ttctacttca tccagtagcg
    25501 agaggttgtc tttaacctct tcattaaacc agtgaccgac cacctcgtgg cccatcgaca
    25561 ttcgtaccaa aacccgtccg gtcacatcgc gcagaaattc gtaatccata atgtgttcct
    25621 ctgcaaagcc cttacagtca ttatcgcagc agcggagaag aaaaaaagcg ggaacagcag
    25681 gcggaatgaa aataaaaacc caccgcagtt gcgatgggtt ttgtaggccc ggtaagcgta
    25741 gccgccaccg ggcaataaga ggcgtaggca tggtaagcct gacgccgtca ggcaaattat
    25801 accgcagtct ggaaaatcac cccatccgct ttctcagtgt actgagagag ctggtcgaag
    25861 ttcagataac ggtaggtatc caccgccgtc ttatccacct gcgccacaaa ggtctggtac
    25921 tcttccggcg tcggcagttt gccaataagc gctgcaaccg ccgccagctc cgcagaagcc
    25981 aggaagacgt tcgcaccagt acctaaacgg ttcgggaagt tacgggtaga agtggaaacc
    26041 accgtcgcgc cgtcagccac acgcgcctgg ttacccatac acagggaaca acccgggatt
    26101 tcgatacgcg caccgctctt accaaacacg ctgtagtaac cttcttcggt cagctgcgca
    26161 gcgtccatac gggttggcgg cgctacccac aggcgggttg gcaactggcc tttgtggcta
    26221 tccagcagct taccagccgc gcggaagtgg ccgatgttgg tcatgcagga accgatgaac
    26281 acttcgtcga tcttctcgcc ctgcacgtca gacagcagac gcgcgtcgtc cggatcgttc
    26341 ggcgcacaga ggattggctc tttgatatcc gccagatcga tgtcgatcac cgctgcgtat
    26401 tccgcgtcag catcggcttc cagcagctgc gggtccgcca gccatttttc cataccctgg
    26461 atacgacgtt ccagcgtacg acggtcgccg tagccttcgg cgatcatcca cttcagcagg
    26521 acgatgttgg aggtcaggta ttcaacgatc ggctctttgt tcagcttgat ggtacaaccg
    26581 gcagcggaac gctcggcaga agcatcggtc agctcaaacg cctgctcgac tttcagatcc
    26641 ggcagacctt cgatttccag gatgcggcca gagaagatgt ttttcttgcc tttcttctca
    26701 acggtcagca ggccctgttt gatggcgtac agcgggatgg catggaccag atcgcgcagg
    26761 gtgatgcccg gctgcatttt gcctttgaag cgcaccagca ccgattccgg catatccagc
    26821 ggcatcacgc cggtcgcggc ggcaaacgcc accagaccag aacccgccgg gaaagagata
    26881 ccaatcggga aacgggtatg ggagtcaccg ccggtaccga cggtgtccgg cagcagcata
    26941 cggttcagcc aggagtggat cacgccgtcg cccggacgca gggagacacc gccgcggttc
    27001 ataatgaagt ccggcagcgt gtggtgcgtg gtgacgtcaa cgggcttcgg ataggctgcg
    27061 gtgtgacaga acgactgcat gaccagatcg gcggagaatc ccagacaggc caggtctttc
    27121 agctcatcac gggtcatcgg gccagtagta tcctgagaac cgacggaggt cattttcggt
    27181 tcgcagtacg cgcccggacg aatgcctttc acgccgcagg cgcgaccgac cattttctgc
    27241 gccagagaga agccacggct gctttctgcc acgtcttttg cctgacggaa aacgtcagag
    27301 tgcggcagac ccagcgcttc acgcgctttg gtggtcaggc cacgtccgat aatcagcgga
    27361 atacggccac cggcgcgtac ttcgtcgatc agcacgtcgg ttttcagttc gaaggttgcc
    27421 agcagttcat cggtttcatg attgcgcact tcgcctttgt acgggtagac gtcaattaca
    27481 tcgcccatgt tcaggttaga aacgtcaact tcaatcggca gcgcgcccgc atcttccatg
    27541 gtgttaaaga agataggcgc aattttgccg ccgaggcaca gaccgccgcc gcgcttgttc
    27601 ggcacgttcg ggatgtcatc gcccatgaac cacagcacgg agttggtcgc ggatttacgg
    27661 gaagaaccgg tgcccaccac gtcacccacg taggccagcg ggtagccttt tttctgcaat
    27721 gcttcgattt gtttgatcgg gccgacaacg cctggctgat ccggctcaat gccttcacgg
    27781 gcgtttttca gcatcgcctg cgcatgtaac gggatatccg gtctcgacca cgcatccggc
    27841 gccggagaga gatcgtcggt attcgtttcg ccggtcactt tgaaaacggt gacggtgatt
    27901 ttttccgcca gcggcggacg gctcaggaac cattcggcgt cggcccaaga ttgcatcacc
    27961 tgtttggcat attcattgcc cgctttggct ttctcttcta cgtcgtagaa gttatcgaac
    28021 atcagcaggg tgtgagacag cgctttggcc gcaatcggcg ccagtttcgc atcgtccagc
    28081 gcgtcaatca gcggatgaat gttgtaacca ccctgcatgg tgcccagcag ttcaatggct
    28141 ttttctgggg agaccagcgg ggaggtggtg tcgcctttcg cgacagcagc gagaaaaccg
    28201 gctttaacat aagcggcttc atcgacgcca ggaggaacgc ggttgatcaa caggtctaac
    28261 aggaattctt cttcgcccac aggcggggtc ttcagcagct cgacaagcgc agccatttgg
    28321 gttgcgtcta aaggtttcgg cacaatcccc tgggcagcac gctcagctac gtgcttacgg
    28381 tattcttcta gcacgacgat atctcctcgc tctcattgtc ataatgcggc gcttttgttg
    28441 atgggcgatt ctcttcacgc tcctgtgaga cagtagttag tagggtaaat gcccggtacc
    28501 gcataaggca caataacagg attttcttta agtgttaatc tgtttacaaa aaagcaacat
    28561 aaaaaagtgg ctgaatcgtt aaggatggtc taatgctcta ctgagacggg agctgcagcc
    28621 ataaatgctt acctcatttc gtgctttgat cgtcacgtaa cgttaccgat cccaacatta
    28681 gctaaaaatt aaactatcgt ccctttatac tcacgccaaa ctgcaccccg tcggcggcag
    28741 gcataatgac catagcgatt ctcgggaatc gggagagata aaatgacgtt gccctttaaa
    28801 ccccatctca ttgcccttgt gtgcagtgcc gggttatttg ccgcttcggg cgtactgtat
    28861 gttaaaagcc gcgctcccga agcgcccgcg caggcggcag ctcccacctc tgagccaacg
    28921 cagaccgctg tgcccgcgcc tgtcgcgaaa acgaccttta ccactgcgca aatcgatcaa
    28981 tgggtcgcgc ctgtcgcgct ttatcccgat gccctgcttt cgcaggtgct catggcctcc
    29041 acctacccgg cgaacgtggt tcaggccgtc cagtggtcgc gggataaccc cacgctgcag
    29101 ggcgatgccg ctattcaagc ggtggccagc caaccgtggg accccagcgt caaatcgctg
    29161 gtcgcctttc ctcagttgat ggcgcttatg ggcgagaatc cgcaatgggt gcaaaacctg
    29221 ggcgatgcgt tcttagccca gccacaggat gtgatggatg cggtgcaaag gctgcgtctg
    29281 ctcgctcaac aaaccggttc gctaaaatcc acgccacagc aaaccgtcac cagcgtgccg
    29341 aagtccagcg cttctaccgc cgtcacgacg acaaccacca catccgccag tacgccagca
    29401 acaccgtcga ccgtcatcaa aattgaacct gcgaatccgc aggtggtgta cgtgccaaac
    29461 tataacccca cgacggtgta tggcgcctgg cccaataccg cttatccgcc ggtgtattta
    29521 ccgccccctc cggggcagca gtttgccgac agttttgtta aaggttttgg ttatagtctg
    29581 ggcgtcgcca ccacctatgc gttgttcagc agcatagact gggatgacga cgatcatcac
    29641 caccatgacg acgaccatca tgatgatgat taccatcatg gtggtaacgg ttatcaacat
    29701 aatggcgata atatcaacat caatgtcaat aatttcaacc ggatatccgg gcaaaacctg
    29761 ccgggccaaa cgatgggctg gcagcataat cccgcctggc gcaatggcgt cccctatccg
    29821 aataataccg ttgcgcaacg gttccatccc accaatgtta gcggcgggtt aagcgcaacg
    29881 cagcaagcgc cagtgtctcg cgacagtcag cgccaggcag ccatggcgca attccaacag
    29941 cgcagccata catcacccgc taacgtgtca ggcgagacat cccgcgacag acagcgcaaa
    30001 gcggcatcgc agcagttaaa tcaaattgcc cagcgtaata attaccgtgg ctatgacgga
    30061 acacaaaaca gcagtcgtcg cgaggcggcg cagcagacac tgaataaatc caccacgcag
    30121 cagcatcgtt ccgagctgaa ggctaaagcc cagcagcacc ctgtttcaca acagcagaga
    30181 gacaccgccc gccagcgtat tgaatcctct acgccacagc agcgtcaggc atttcgccag
    30241 aatatgcacg ccaatgtgtt tagcgggaac gacagtcgat cgccgtcatg gcaatcgcaa
    30301 cagctacgcg gcctagaaag ccgtcgcggc agtcacttga acaccgagca acgcgccgcc
    30361 gcgcgggaac atttttctga acatcatgaa tttcatcgcc gttaaccgga gcagataatg
    30421 aaaaaggtta tgttaagcgc tctgttactg tcgttaccct tgctgggcta cgcgcaggaa
    30481 cggttcccct ccccggaagc ggccgccagc gccttcgccg cggcggtagc cggaaaaaac
    30541 gaaacgcagc ttaccgcgct actgggcgat gactggcggc aatttctgcc gccggaaggt
    30601 gccgatcccg aggccgtggc ccgcttcaat cgtgactggc gcgaaggcca tcgcattgta
    30661 caaaaagaca atacggcgca cctgaatgtc ggacgagaag actggcagct cccggtgccc
    30721 atggtgaaag agactggcgg ctggcgcttt gatatggcgg cagccgggaa tgagatcctc
    30781 acccgtacta ttgggcgaaa tgaactttct accttacagg ccatgcatgc ttacgttgat
    30841 gcgcagcagg actattactt acaaaaccat cgctgggcgc acaggataat cagtagcgaa
    30901 ggccaaaaag atggcctgta ctggccaacc aaagcaggcg acgtccccag tccgttaggc
    30961 ccaaacttta gtcccgcagc gccagacgag ggttaccacg gctaccattt ccgtattatc
    31021 agcgataacg acggtcacgg tgcggcgctt ctggcctggc cgatgcatta cggcgaaacc
    31081 ggggtgatga gttttatggt caaccaggac gatcgtattt atcaggcgga tttaggcaag
    31141 gagacggaga gtaaagttca ggctatcacg cgttttgcgc cagacgcgca gtggcaggtc
    31201 gccgaataac ccgtaagcgc ctggcgttat cgccaggccg tgatcattag ccctgatgcg
    31261 gcatcaattc cgggtggcct tgtaccggcg gcttgttgct ggtcagcgcg gcttcatcag
    31321 cctgaatgct gccggaattg gccgcccata cgccttcatg cgtgtgggtg atctgctgat
    31381 gctgcgcatt caaatcctcg cccattgccg caatatgcgt gctttccgta ccgccgctgt
    31441 tagtcgccca ggggatgacg ggatcgctgg caaatgccat gccggaaatc aaggtcgcag
    31501 ttagcgctgc cgttgtcaga aaaagtttca tatatcaaac ctcataatta gctcgctatt
    31561 attttatagc gttaccaatt tcaggatgat gacaaattaa ggagaggtat ttcttatgaa
    31621 acaattagtt ggtcgaaaat gacagacaaa ggcactaccg acggcataag ctttgaaaaa
    31681 cgtactgctg cggaaaggat aaattttgcg gtttcgttat ccttcgccat catttgacac
    31741 atctgatttg ccatgcataa aaaaagcggc tgtaaagccg cttttctgta tcgggtggcg
    31801 cattgccacc cgcagaagat tatttcttct tcgctttcgg gtttggcagg tcggtaatgc
    31861 taccttcgaa gatttccgcc gccaggccca cggactcatg cagagtcggg tgagcatgga
    31921 tggtcagcgc gatatcttcc gcgtcacagc ccatttcgat cgccagaccg atttcaccca
    31981 gcagctcgcc gccgttggta ccgacaatcg ccccgccgat cacgcggtga gattctttgt
    32041 cgaaaatcag tttggtcata ccgtctgcgc agtcagaagc gatagcacgg ccagaagctg
    32101 cccacgggaa ggtggcggtt tcatagctga tgcctttttc tttcgcttct ttctcggtca
    32161 ggccaaccca tgccacttct ggctcggtgt acgcgataga cgggataact ttcggatcga
    32221 agtagtgttt cttcccggcg ataacttcag cggcaacgtg gccttcgtga acgcctttgt
    32281 gcgccagcat cggctgaccg acgatatcgc cgatagcgaa gatgtgcggc acgttggtgc
    32341 gcagctgttt gtcgacgcgg ataaagccac ggtcgtcaac ttccacgcca gctttgcccg
    32401 cgtcgaggtt tttaccgttc ggcacacgac caatcgccac cagaaccgca tcataacgct
    32461 gcgcttcagc cggggctttt ttgccttcca tcgaaacgta gataccgtct tctttcgctt
    32521 caacggcagt cactttggtt tccagcatca ggttgaattt cttgctgatg cgtttggtga
    32581 agactttaac gatgtcttta tcagccgccg ggataacctg gtcgaacatt tcaaccacgt
    32641 caatctctga acccagcgcg tggtatacgg tacccatttc cagaccgatg ataccgccgc
    32701 ccatgaccag catacgcttc ggcacttctt tcagttccag agcgtcggta gaatcccata
    32761 cgcgcgggtc ttcatgcgga ataaacggta attggatcgg acgagaaccc gccgcgatga
    32821 tcgcgttatc gaagttgatc acggttttgc cattttcgcc ttccacttcc agggtattag
    32881 ccccggtgaa tttacccaga ccattgacca ctttcacttt acggcctttg gccataccag
    32941 ccagaccgcc ggtcagctgc gtgatcactt tctctttcca ggtacgaatc ttgtcgatat
    33001 cggttttcgg ctcgccgaag acgataccgt gttcagccag cgctttggct tcttcgataa
    33061 cttttgctac gtgcagcagc gctttagaag ggatacagcc gacgttcaga caaacaccgc
    33121 caagggtgtt gtagcgttct acaattacgg tttccagacc taaatcagcg caacggaaag
    33181 cggcagaata gcctgccggg cccgccccaa gtaccacgac ctgagttttg atttcagtac
    33241 tcatcatgac ctctttattt gtatccggcg gtccggggta cttgatcgcc catcatccac
    33301 cgggtcgttc tatccgcccg tatcttacaa aattgttaac aattttgaaa caacaaacgg
    33361 atcacgaatt atcgctttcg ctaataacct cacaaactcc atgagattat caaaaaaaag
    33421 ccggccgtcg ggccggcttt ttcgcttaca tcaccagacg gcgaatgtca gacaacatat
    33481 tgttgataat ggtaatgaaa cgcgcaccat cagcaccatc gatcacacgg tggtcgaaag
    33541 aaagagagat aggcatcatc agacgcggca caaactcttt cccattccac accggttcca
    33601 tcgccgactt agaaacgccg aggatagcca cttccggcgc gttgacaatc ggcgcaaagt
    33661 gggtagttcc caggccgccg atgctggaga tagtgaagca accaccctgc atttcgccag
    33721 cggtcagctt accatcacgc gcttttttgg agatggtggt cagttcacga gacagctcgg
    33781 tcacgctctt cttattcacg tctttaaaga ccggaaccac caggccattc ggggtatcaa
    33841 ccgccacgcc gatgttgatg tattttttca gggtcagacg ctgaccgtct tcggatagag
    33901 agctgttgaa gcgcggcatc tgttccagag cagcggcaac cgctttcatg atgaagacca
    33961 ctggcgtgta tttcacatcc agtttgcgct tctcagcttc ggcgttctgc tgtttacgga
    34021 acgcttccag atcggtgata tcggttttgt cgaagtgcgt aacgtgcggg atcatcaccc
    34081 agttacggct caggttcgcg ccagagattt tctggatacg gcccagttcc acttcttcaa
    34141 cttcaccaaa cttgctgaag tccactttcg gccacggcag catacccggg ataccgccgc
    34201 ccgcagcagc cggcgcagct tccgcgcgtt tgatagcgtc tttcacgtaa gcctgaacgt
    34261 cttcgcgcag aatacggcct ttacgaccag tgcctttcac tttcgccagg ttgacgccaa
    34321 actcgcgcgc cagacggcga atcagtgggg tagcgtgaac gtaagcgtcg ttttcagcga
    34381 actcagattt gccttcggct ttggcagccg gggcagcagg cttctcagct ttcgccgccg
    34441 gagccggcgc cgctgcttcc tgtttagccg gagcggccgc aggcgctgcg ccttccactt
    34501 cgaagaccat aatcagcgag ccggttttca ctttatcgcc ggtgctgatt ttgatttctt
    34561 tcacggtgcc cgcgaacggc gcaggcactt ccatagaggc tttgtcgcct tccacggtga
    34621 tcagcgactg ttcagcggta actttatcgc cgactttgac catcacttcg gtgacttcaa
    34681 cttcgtcgcc gccgatgtcc ggtacgttaa cgtctttcac gcccgtcgct gctgctggag
    34741 cagccgcagc cggagcggct tccgctttcg ctggtgctgc tgcgcccgct tcacccgcca
    34801 cttcgaagac cataatcaga gagccggtag acactttatc accggtgttc actttgatct
    34861 ctttcacggt gcctgcaaac ggagcaggaa cttccataga ggccttgtcg ccttcgacgg
    34921 tgatcagcga ctgttcagct tctacggtgt cgcccacttt caccatcact tcagtcactt
    34981 caacttcgtc actgccgata tccggaacgt gaacgtcttt cgccgctgcc gcagcaggtg
    35041 ctgctgccgg cgccgcttct ttcttctctt ctgcctgagc aggcgcagcg tcagctgcac
    35101 cgtcggcgga atcgaaaatc atgataagtg caccggtctc agttttgtcg ccgacagaga
    35161 ctttgatctc tttcacgacg ccagcctgcg gagacgggac ttccatagag gctttgtcgc
    35221 cttctacggt gatcagcgac tgttcagctt caactttgtc gcccactttg accagaatct
    35281 cggtgatttc aacttcatct gtcccgatgt ccggtacttt gatttcgata gccattattc
    35341 ttttacctct tacgccagac gcgggttaac tttatctgca tcgatgttga atttggtaat
    35401 cgcatccgct accactttct tgtcgatttc gccacgttta gccagttcgc ccagcgctgc
    35461 gacaaccaca taagaagcat caacttcgaa atggtgacgc aggttctcac ggctgtcgga
    35521 acgaccgaag ccatccgtac ccagtacgcg atagtcgtca gccggtacgt aagtacgaac
    35581 ctgctcggcg aacagtttca tatagtcagt agatgccaca gccggagcgt cgttcatcac
    35641 ctgagcgatg tacggtacgc gcggggtttc cagcgggtgc agcatgttcc agcgctcaca
    35701 atcctgacca tcacgcgcca gttcggtgaa ggaggtcacg ctatatacgt cagaacctac
    35761 gccgtaatct ttcgccagga tctctgccgc ttcacggacg tgacgcagga tagaaccgga
    35821 gcccagcagc tgaactttac ctttgctacc ttcgagggtt tcgagtttgt agataccttt
    35881 acggatacct tcctcggcac ctgctggcat tgccggcatg tggtagtttt cgttcagggt
    35941 ggtgatgtag tagtaaacgt tctcttgttt ttcaccgtac atacgctcca gaccatcatg
    36001 catgatgaca gccacttcat aagcgtaagc cgggtcgtaa gagatacagt tcgggatagt
    36061 cagcgactga atgtggctgt gaccatcttc gtgctgcaga ccttcgccgt tcagcgtagt
    36121 acgaccggaa gtcccgccaa tcaggaagcc gcgagcctgc tggtcgccag cctgccagca
    36181 caggtcgccg atacgctgga acccgaacat agagtagtag atgtagaacg ggatcatcgg
    36241 cagatcgttg gtgctgtaag aggtcgccgc agccagccag gatgcgcctg cgcccagctc
    36301 gttgatacct tcctgcagaa tctggccttt ctcgtcttct ttgtagtaag caacctgctc
    36361 acggtcctgc ggggtgtact gctggccgtt cgggctgtag ataccaatct gacggaacag
    36421 accttccata ccgaaagtac gcgcttcgtc ggcgatgatc ggaaccagac gatctttgat
    36481 cgacttgttc ttcagcatca cgttcagggc acgcacgaaa gcgatcgtag tggaaatctc
    36541 tttactttgc tcttccagca gcgcgccgaa atctgaaagt tgaggcagct ctaacttctc
    36601 ggtgaagttc ggctgacggc ttggcaggta gccgtgcagc gcctgacggc gttcatgcag
    36661 gtatttgtgt tcttcagaac cttccgggaa ggtaatgtac ggcagttttt cgagatcagc
    36721 atcggcaacc ggcacgttga aacgatcgcg gacgtaacgc acgccgtcca tgttcatttt
    36781 cttaacctgg tgagcgatgt ttttaccttc cgcggtgtca cccatgccgt aacctttaat
    36841 ggtatgggcc aggattacgg tcgctttgcc tttggtttcc tgcgcttttt tcagtgccgc
    36901 gtagactttc ttcggatcgt gaccaccacg gttcagcgcc caaatctgct cgtcagtcca
    36961 gtcggccacc agcgcggcgg tttccggata tttaccgaag aagtgctcac gcacgtaagc
    37021 gccgtctttg gatttgaagg tctggtagtc gccgtcaacg gtttcgttca tcagctggat
    37081 cagtttaccg ctggtgtctt tacgcagcag ttcatcccaa cgaccgcccc acatgacttt
    37141 gataacgttc cagccagcac ctgcaaagat gccttccagt tcgttaacaa tcttgccgtt
    37201 accggtgacc gggccgtcaa gacgctgcag gttacagttg ataacaaaaa ccaggttgtc
    37261 cagtttttca cgggtggcga tggtgatcgc gcctttggat tccggctcat ccatctcgcc
    37321 gtcgccgagg aaggcgtaaa cggtctgttt agaggtatct ttcaggccac ggtgttccag
    37381 atatttcagg aatttcgcct ggtagatagc accgattggg cccagcccca tagagacggt
    37441 cgggaactgc cagaattccg gcatcagttt cgggtgcgga taggaagaga ggccattgcc
    37501 gtgaacttcc tgacggaagt tatccatctg ttcctgggtc agacgacctt ccaagaacgc
    37561 gcgagcgtag atgcccggag agatgtggcc ctggaagtac accaggtcgc cgccatcctg
    37621 ttcgttgcgc gcacggaaga aatggttaaa acagacatca tagatcgtgg cggaagactg
    37681 gaaggacgcc atgtggccgc ccaactcaag gtctttttta gacgcgcgca gcacggtcat
    37741 gatggcgttc cagcggatcg cagaacgaat gcgacgttcc agctccagat tacccgggta
    37801 ttccggttcg tcttcaacgg caatagtgtt gatgtaatta ctggcccctg cgcctgccgc
    37861 gactttcacg ccgcctttac gagcttcaga aagcagttgg tcaatcagat actgagcgcg
    37921 ctcaacacct tcttcacgga taaccgattc gatcgcctgt agccagtcgc gagtttcgat
    37981 cggatccacg tcattttgga aacgttctga catgggggta ttccttatct atctaatacg
    38041 ttgagttatc tggaacctgt cccattaaac tttcgtcaga aagcttaata agacaggttc
    38101 tgcgtttagt tgccgcgcac atttttgcgc gttattcaca acatcttctg gttaacgttc
    38161 tgccagaaaa aactaattct tgcgctgttc caggcggcgt aaagcgcgtt cacgacggct
    38221 ctcctcacgg cttctgtcca gcataatctc ttcgataaac gccagatgtc ggtgtgacgc
    38281 ttcacgcgct tcttctggtt ttccggccat aatggcttca aatatacggg tgcgatgcgt
    38341 gctcaccagc ggcagcatct cccgacgcgc atacagcaat tcgaagttct gccgcacgtt
    38401 ttgcgccagc atcggctcca tacaccttag cagatgaagc aataccacgt tgtgcgccgc
    38461 ttcggtgacg gcgatttgat actggagcac ggcttcggac tcggcatcca gatcgccgga
    38521 ctcttgcgcc agctcaatag cgtggtgcag ctcgcgaata cggtctttat cttcgtcggt
    38581 gctgcgcagc gccgcgtaat aagccgcaat gccttccagc gcatggcgcg tttcgagcag
    38641 gtcaaactgg gattcagggt gatcggagag cagttccacc agcgggtcgc taaagctctg
    38701 ccacaggctg ctctgcacga aggttccgcc gccctggcga cgaagcaaca atcccttcgc
    38761 ttcgagacgt tgaatcgcct cgcgcaagga gggacgggag acgtcgaact gttttgccag
    38821 ttcacgttcc ggtgggagtt tttctccggg acgcaatgtt ccctcaagga ttaaaaactc
    38881 cagctgctgc tcgatcacat cggagagttt tggttggcgg attttgctgt aggccatgat
    38941 ttcctgtctt aagccatttg cccggagtca attggtctta ccaatttcat gtctgtgacg
    39001 ctaaagtaac aaagtattca ccttctgtcc atacaggttt tgattgaaat cagtaaagga
    39061 ggcacatttt aacaatttta cagaaatcac gtttcaaaac tgtaactgtg cacaaatgtt
    39121 aaatttaccc accaggaggt agatttaacg tatttgaaac gataaaaaat ctcatctgaa
    39181 ccgattcaac a
//
LOCUS       DAJVSD010000010        39016 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.010, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000010 DAJVSD010000000
VERSION     DAJVSD010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 39016)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39016)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39016
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.010"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            238..1440
                     /gene="ackA"
                     /locus_tag="OQP62_000416"
     CDS             238..1440
                     /gene="ackA"
                     /locus_tag="OQP62_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HCS1720056.1"
                     /translation="MSSKLVLVLNCGSSSLKFAIIDAVNGDEYLSGLAECFHLPEARI
                     KWKMDGSKQEAALGAGAAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSS
                     VVIDESVIQGIKDSASFAPLHNPAHLIGIAEALKSFPQLKDKNVAVFDTAFHQTMPEE
                     SYLYALPYSLYKEHGVRRYGAHGTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVS
                     AIRNGKCVDTSMGLTPLEGLVMGTRSGDIDPAIIFHLHDTLGMSVDQINKMLTKESGL
                     LGLTEVTSDCRYVEDNYATKEDAKRAMDVYCHRLAKYIGSYTALMDGRLDAVVFTGGI
                     GENAAMVRELSLGKLGVLGFEVDHERNLAARFGKSGFINKEGTRPAVVIPTNEELVIA
                     QDASRLTA"
     gene            1517..3661
                     /gene="pta"
                     /locus_tag="OQP62_000417"
     CDS             1517..3661
                     /gene="pta"
                     /locus_tag="OQP62_000417"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HCS1720057.1"
                     /translation="MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPR
                     AGGDAPDQTTTIVRANSTLPAAEPLKMSHVESLLSSNQKDVLMEEIIANYHANTKDAE
                     VVLVEGLVPTRKHQFAQSLNYEIAKTLNAEIVFVMSQGTDTPEQLNERIELTRSSFGG
                     AKNTNITGVIINKLNAPVDEQGRTRPDLSEIFDDSSKAQVIKIDPAKLQESSPLPVLG
                     AVPWSFDLIATRAIDMARHLNATIINEGDIKTRRVKSVTFCARSIPHMLEHFRAGSLL
                     VTSADRPDVLVAACLAAMNGVEIGALLLTGGYEMDARISKLCERAFATGLPVFMVNTN
                     TWQTSLSLQSFNLEVPVDDHERIEKVQEYVANYVNADWIESLTATSERSRRLSPPAFR
                     YQLTELARKAGKRVVLPEGDEPRTVKAAAICAERGIATCVLLGNPDEINRVAASQGVE
                     LGAGIEIVDPEVVRESYVARLVELRKSKGMTEPVAREQLEDNVVLGTLMLEQDEVDGL
                     VSGAVHTTANTIRPPLQLIKTAPGSSLVSSVFFMLLPEQVYVYGDCAINPDPTAEQLA
                     EIAIQSADSAIAFGIEPRVAMLSYSTGTSGAGSDVEKVREATRLAQEKRPDLMIDGPL
                     QYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQRSADLISIGPMLQGM
                     RKPVNDLSRGALVDDIVYTIALTAIQASQQQQ"
     gene            3879..5399
                     /gene="yfcC"
                     /locus_tag="OQP62_000418"
     CDS             3879..5399
                     /gene="yfcC"
                     /locus_tag="OQP62_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative basic amino acid antiporter YfcC"
                     /protein_id="HCS1720058.1"
                     /translation="MSVVTESKTARKWAMPDTLVIIFFVAILTSIATWVVPVGMFDSQ
                     EVQYQVDGQTKTRKVVDPHSFRIVTNEAGEAQYHRVQFFTTGDERPGLMNFPFEGLTS
                     GSKFGTAVGIIMFMLVIGGAFGIVMRTGTVDNGILALIRHTRGNEVLFIPVLFVLFSL
                     GGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQ
                     GIAGVPVLSGSGLRIVVWIVATLIGLVFTLVYASRVKKNPLLSRVHESDRYFREQQDE
                     VVQRPFTFGDWLVLLVLTGVMIWVVWGVIVHAWFIPEIASQFFTMGVVIGLIGVIFRL
                     NGMTVNVMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGEPSVLNTLLNSIAHGI
                     SGLNNAIAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQVTVLAFQFG
                     DGFSHIIYPTSASLMATLGVCRVDFRNWLKVGASLLGLLFIMSSVVVIGAQMMGYH"
     gene            complement(5448..6401)
                     /locus_tag="OQP62_000419"
     CDS             complement(5448..6401)
                     /locus_tag="OQP62_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase family protein"
                     /protein_id="HCS1720059.1"
                     /translation="MIKLAPAGLKDDIEMRKVYAGFVAGQIEAGSPIIALEADLMSSM
                     AMDSVARDYPQHVINCGIMEANVIGTAAGLALTGRKPFVHTFTAFASRRCFDQLFMAL
                     DYQRNNVKVIASDAGVTACHNGGTHMSFEDMGIVRGLAHSVVLEVTDAVMFANILRQL
                     MDLDGFYWLRTIRKQATSIYAPGSTFTIGKGNVLREGDDITLIANGIMVAEALEAARQ
                     LEQEGVSAAVIDMFTLKPIDRMLVKNYAEKTRRIVTCENHSIHNGLGSAVAEVLVENC
                     PVPMRRVGVKERYGQVGTQDFLQQEYGLTAAAIVEAAKSLL"
     gene            complement(6394..7224)
                     /locus_tag="OQP62_000420"
     CDS             complement(6394..7224)
                     /locus_tag="OQP62_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HCS1720060.1"
                     /translation="MNVTEITQLARDIRVATLKSLNHLGFGHYGGSMSVVETLAVLYG
                     AVMKIDPADPDWPERDYFVLSKGHAGPALYSTLAIKGYFPREELNTLNQNGTRLPSHP
                     DRLKTHGVDATTGSLGQGISIAGGMALSHKLARRPNRVFCIVGDGELNEGQCWEAFQF
                     IAHHRLNNLTVFIDWNKQQLDGELEEIINPFDLEGKFRAFGFDVVTVKGDDIAGLLAV
                     VQPVPPADARPRVVILDSIKGQGVPCLEQLTNSHHLRLTDGMKQTLNEAIHQLEVMHD
                     "
     gene            complement(7221..8612)
                     /locus_tag="OQP62_000421"
     CDS             complement(7221..8612)
                     /locus_tag="OQP62_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461284.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HCS1720061.1"
                     /translation="MFILETLNFVVDILKVPSVLVGLIALIGLVAQKKAFSDVVKGTI
                     KTILGFIVLGGGATVLVGSLNPLGGMFEHAFNIQGIIPNNEAIVSIALEKYGASTALI
                     MAFGMVANIVVARFTRLKYIFLTGHHTFYMACMIGVILTVAGFEGVGLVFTGSLILGL
                     VMAFFPALAQRYMRRITGTDDIAFGHFGTLGYVLSGWIGSLCGKGSRSTEEMNLPKNL
                     SFLRDSSISISLTMMIIYLIMAVSAGREYVEATFSGGQNYLVYAIIMAITFAAGVFII
                     LQGVRLILAEIVPAFTGFSEKLVPNARPALDCPVVYPYAPNAVLIGFLFSFLGGLVGL
                     FLLGQMKLVLILPGVVPHFFTGATAGVFGNATGGRRGAMIGAFANGLLITFLPVLLLP
                     VLGAIGFANTTFSDADFGVIGILLGNLARYLSPMAITGLVVALFALLVAYNVLAKSKK
                     ATAEVQENSGAKE"
     gene            complement(8633..8905)
                     /locus_tag="OQP62_000422"
     CDS             complement(8633..8905)
                     /locus_tag="OQP62_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HCS1720062.1"
                     /translation="MKIMAICGSGLGSSFMVEMNIKKVLKKLNIDAEVEHSDLSSATP
                     GAADLFVMAKDIAASASVPESQLVVINNIIDINELETQLRAWFAKQ"
     gene            complement(8986..9429)
                     /locus_tag="OQP62_000423"
     CDS             complement(8986..9429)
                     /locus_tag="OQP62_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HCS1720063.1"
                     /translation="MLGTWLSDATITLRESVETWPQALEICGKPLLDAGVIAPEYITA
                     IVQQHQKLGPYYVLAPGLAMPHARPEEGAKGLGLSLLKLQRGVSFGADEFDPVDIIIM
                     LAAPDKHSHIEMISALAELFSSDVDMEKLHQAKNLEDIKTIIDRF"
     gene            9682..10701
                     /locus_tag="OQP62_000424"
     CDS             9682..10701
                     /locus_tag="OQP62_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS1720064.1"
                     /translation="MSIPRKRRSTGKVTIADVAQLAGVGTMTVSRALRTPEQVSDKLR
                     EKIEAAVHELGYMPNLAASALASASSHTIAMVVPNLAEAGCSEMFAGLQQILQPAGYQ
                     IMLAESQHRVEQEEKLLETLLASNIAAAILLSVEHSTTVRQWLKNASIPVMEMGAIRS
                     DPIDMNIGIDNVAAMYELTEMLIQRGYQNIGLLCANQEQWIFQQHLHGWYKAMLRHHM
                     SPNRVINAALPPNFSTGASQLPEFLLAWPELDALVCVSDELACGALYECQRRRIKVPD
                     DLAVVGFGDSDVSRVCQPPLTTMAVPHRKIGSEAGRALLERLNQGNWSDRKSIASSLC
                     MRESC"
     gene            complement(10707..11261)
                     /gene="yfcD"
                     /locus_tag="OQP62_000425"
     CDS             complement(10707..11261)
                     /gene="yfcD"
                     /locus_tag="OQP62_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase YfcD"
                     /protein_id="HCS1720065.1"
                     /translation="MVEQRRLASTEWVDIVNEDNEVIAQSSREQMRAQRLRHRATYIV
                     VHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFA
                     EHGLFYFEDQHCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLK
                     ALALWMTRNAKNEAALQEKPEETE"
     gene            complement(11318..11869)
                     /gene="yfcE"
                     /locus_tag="OQP62_000426"
     CDS             complement(11318..11869)
                     /gene="yfcE"
                     /locus_tag="OQP62_000426"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase"
                     /protein_id="HCS1720066.1"
                     /translation="MKLMFASDIHGSLPATERVLERFAQSGARWLVILGDVLNHGPRN
                     ALPEGYAPAQVAERLNAVATQIIAVRGNCDSEVDQMLLHFPITAPWQQILTQERRLFL
                     THGHLFGPTNLPALHTGDVLVYGHTHLPVAQQQEGLYHFNPGSVSIPKGGYAASYGIL
                     DDNVLSVIALNDQSIIAQVAINS"
     gene            complement(11925..12569)
                     /gene="yfcF"
                     /locus_tag="OQP62_000427"
     CDS             complement(11925..12569)
                     /gene="yfcF"
                     /locus_tag="OQP62_000427"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase"
                     /protein_id="HCS1720067.1"
                     /translation="MSKPVIVLWSDANFFSPYVLSAWVALQEKGLSFTLKTRDLDQGE
                     HLQPGWRGYALTQRVPVLEADNFELSESSAIAEYLEERFAPPQWERIYPHDLQKRARA
                     RQIQAWLRSDLLPLREERPTDVVFAGAKKAPLSEAGKASAAKLFATAEALLGQGTQNL
                     FGEWCIADTDLALMINRLVLHGDDVPASLAAYATFQWQRASVQRFIALSSKRSG"
     gene            12712..13359
                     /gene="yfcG"
                     /locus_tag="OQP62_000428"
     CDS             12712..13359
                     /gene="yfcG"
                     /locus_tag="OQP62_000428"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GSH-dependent disulfide bond oxidoreductase"
                     /protein_id="HCS1720068.1"
                     /translation="MIDLYYAPTPNGHKIMLFLEEAELAYRLLKVDISKGNQFRPDFL
                     AISPNNKIPAIVDHAPADGGQPLSLFESGEILLYLAEKSGKLLSGELRERHTTLQWLF
                     WQVGGLGPMLGQNHHFNHFAPQAIPYAIERYQVETQRLYNVLNKRLETSPWLGGDHYS
                     IADIASWPWVNAHQRQRIDLDTYPAVYNWFERIRTRPATARALLQAQLHCNSTKA"
     gene            13483..14376
                     /locus_tag="OQP62_000429"
     CDS             13483..14376
                     /locus_tag="OQP62_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HCS1720069.1"
                     /translation="MQILITGGTGLIGRHLIPRLLILGHQVTVVTRNPDNARQILDSR
                     VTLWKGLAEREHLNEIDAIINLAGEPIADKRWTSQQKERLCQSRWAITQKLVDLIHAS
                     ATPPSVLISGSATGYYGDLGDVVVTEDEPPHNEFTHKLCARWEQIACRAQSDQTRVCL
                     LRTGVVLAPQGGILGKMVPPFRLGLGGPVGNGRQYLAWIHIDDMVNGILWLLDNDLRG
                     PFNMVSPYPVHNEQFAHALGRALRRPAIIRIPATAIRLLMGESSVLVLGGQRALPKRL
                     EAAGFAFRWYDLEEALADVIR"
     gene            complement(14428..15201)
                     /gene="hisP"
                     /locus_tag="OQP62_000430"
     CDS             complement(14428..15201)
                     /gene="hisP"
                     /locus_tag="OQP62_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter ATP-binding protein
                     HisP"
                     /protein_id="HCS1720070.1"
                     /translation="MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGK
                     STFLRCINFLEKSSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN
                     LWNHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR
                     VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV
                     SSHVIFLHQGKIEEEGNPEQVFGNPQSPRLQQFLKGSLK"
     gene            complement(15215..15922)
                     /gene="hisM"
                     /locus_tag="OQP62_000431"
     CDS             complement(15215..15922)
                     /gene="hisM"
                     /locus_tag="OQP62_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter permease HisM"
                     /protein_id="HCS1720071.1"
                     /translation="MIEIIQEYWKSLLWTDGYRFTGVAITLWLLISSVVMGGLLAVIL
                     AVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYSGMYTLEIVKGTDLLNAFFRSGL
                     NCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIAL
                     PAYSNEVILMLHSTALAFTATVPDLLKIARDINSATYQPFTAFGIAAVLYLLISYVLI
                     SLFRRAERRWLQHVSSK"
     gene            complement(15919..16605)
                     /locus_tag="OQP62_000432"
     CDS             complement(15919..16605)
                     /locus_tag="OQP62_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012124147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter permease HisQ"
                     /protein_id="HCS1720072.1"
                     /translation="MLYGFSGVILQGAIVTLELALSSVVLAVLIGLVGAGAKLSQNRV
                     TGLIFEGYTTLIRGVPDLVLMLLIFYGLQIALNVVTDSLGIDQIDIDPMVAGIITLGF
                     IYGAYFTETFRGAFMAVPKGHIEAATAFGFTHGQTFRRIMFPAMMRYALPGIGNNWQV
                     ILKATALVSLLGLEDVVKATQLAGKSTWEPFYFAVVCGLIYLVFTTVSNGVLLLLERR
                     YSVGVKRADL"
     gene            complement(16788..17570)
                     /gene="hisJ"
                     /locus_tag="OQP62_000433"
     CDS             complement(16788..17570)
                     /gene="hisJ"
                     /locus_tag="OQP62_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter substrate-binding
                     protein HisJ"
                     /protein_id="HCS1720073.1"
                     /translation="MKKLALSLSLVLAFSSATAAFAAIPQKIRIGTDPTYAPFESKNA
                     QGELVGFDIDLAKELCNRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQE
                     IAFTDKLYAADSRLVVAKNSDIQPTVASLKGKRVGVLQGTTQETFGNEHWAPKGIEIV
                     SYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPIGKDYKFGGPAVKDEKLFGVGTG
                     MGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG"
     gene            complement(17808..18590)
                     /gene="argT"
                     /locus_tag="OQP62_000434"
     CDS             complement(17808..18590)
                     /gene="argT"
                     /locus_tag="OQP62_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine/arginine/ornithine ABC transporter
                     substrate-binding protein ArgT"
                     /protein_id="HCS1720074.1"
                     /translation="MKKTVLALSLLIGLGATAASYAALPQTVRIGTDTTYAPFSSKDA
                     KGDFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQE
                     IAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGSTQEAYANDNWRTKGVDVV
                     AYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTG
                     VGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFNVYGD"
     gene            complement(18879..19448)
                     /locus_tag="OQP62_000435"
     CDS             complement(18879..19448)
                     /locus_tag="OQP62_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HCS1720075.1"
                     /translation="MKRLIVGISGASGAIYGVRLLQILRDVDSVETHLVMSQAARQTL
                     ALETHFSLREVQALADVTHDARDIAASISSGSYPTAGMVILPCSIKTLSGIVHSYTDG
                     LLTRAADVILKERRPLVLCVRETPLHIGHLRLMTQAAEIGAVIMPPVPAFYHLPQTLD
                     DVINQTVNRVLDQFDIPLPHDLFVRWQGA"
     gene            complement(19475..20881)
                     /locus_tag="OQP62_000436"
                     /pseudo
     CDS             complement(19475..20881)
                     /locus_tag="OQP62_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461299.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
     gene            complement(20945..22048)
                     /locus_tag="OQP62_000437"
     CDS             complement(20945..22048)
                     /locus_tag="OQP62_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/ornithine racemase family PLP-dependent
                     enzyme"
                     /protein_id="HCS1720076.1"
                     /translation="MYMPVLEINLRKLEENARTEKALLASSGIDVMAVNKVFDGCVET
                     AQAVLNGGITVIAESRTYNLKKIRETGCTTCLLRSPCLSEIEDVVRYADISLNSEPVV
                     LRALSQEAQRQGKTHQVLLMVDMGDLREGIWFGEYQRILETVTLITGLPGLELYGLGT
                     NFNCYGTVLPTVKNGEDFLALAARLEADSGIPVRRLSAGNCTSYHLLDKGIWPQGLNH
                     LRIGGLHEFGIEYVDMKYLNEFHHSAKPVDKACSDMYILEAEIIELNSKPTVPVGELG
                     VDAFLQSKTFVDRGIRRRALLAFGRQDVPSDNCVPCDDAITILGQTSDHTLVDIEDCR
                     QSLKVGDVVRFELDYTGLLMACQTKGVAWRFTR"
     gene            complement(22050..23471)
                     /locus_tag="OQP62_000438"
     CDS             complement(22050..23471)
                     /locus_tag="OQP62_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1720077.1"
                     /translation="MSNTNSGLLGIKDIVFMNVIAILSLRQIPNVAPYGASAMLLWVI
                     AAFCLFFPLAMVCGELSTGWPKDGGIFVWIKEAFGKRIAWIVVVCFLFSCVLFFPLML
                     QFGFTALGYMIGGGLAENKAFIGIGSAVIFWLLTLMNIRGMEWTKIINSISAWCGVFI
                     PSAILILLAVVWLCTGHQMQTDYTTAKNWIPDLGHWDTIVFLSSMMFAFAGLEVAPMI
                     AGRTRNPQRDFPRAMAVSAAVIVGIYMVGTWALNTLLPAGKTDIVAGVMQAMHAAADT
                     LHMPWLIPVMAICMFFGALGQINSWLVGPIYMLQEASREDNLLGDRIGKLHPVWKTPA
                     FALTIQAIIVTVLCFSTFISPSVAAAYWMLTALTTITYFIPYLVMFPAFWRLRKTQPD
                     TPRSFKIPGKVLPAILPALGFLSIAFAVALLFIPPSQIDMGGYFQYAGKIIGGAVLAV
                     VVAEYIYHRAQKRNARLSMAGGK"
     gene            complement(23562..24959)
                     /locus_tag="OQP62_000439"
     CDS             complement(23562..24959)
                     /locus_tag="OQP62_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HCS1720078.1"
                     /translation="MTDSIMQNYNQLREQVINGDRRFQHKDGHLCFEGVDLDALARQY
                     PTPFYVFSEPEIIRNIHEIQQAFAAHKNTKTFFASKTCSVMGVLKAIRDAGICAEANS
                     QYEVRKCLEIGFRGDQIVFNGVVKKPADLEYAIANDLYLINVDSLYELEHIDAISRKL
                     KKVANVCVRVEPNVPSATHAELVTAFHAKSGLDLEQAEETCRRILAMPYVHLRGLHMH
                     VGDQVPESEPFAKATKVLVDESRRLEEVLGIKFDLINVGGGIPVPYKYDDENGDPLKD
                     NMYAGITAQDFADAVIREVHKWRTDVEICIEPGRKVTGSAAVLLTEVSCEKRKTNYDL
                     NGNVECHVEWKFVDAGYSVLSDSQHFDWFFYVYNASRMTAAHDAWIKLAGPLCDGGDY
                     FHMGVKGEEFLLPKETHVGDIVAFLDAGAYTIESQTVYNNRPRTGVVMIDKNGETRLI
                     RREDSYEDMVKYDIY"
     gene            25170..26597
                     /locus_tag="OQP62_000440"
     CDS             25170..26597
                     /locus_tag="OQP62_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HCS1720079.1"
                     /translation="MASTNQELASALRMFSRFFDLIHQPLAVINERGEYVYYNQESAD
                     LDGYSIERAMGKHMLDVYPGMKETQSTMLSSLKKGVEYIGHYQIYYNARGQAVDYQHT
                     TASLYASDGGMVGVIEIGRNMSGVRRLQEQVVELNQLLYADHHEKHHAIITENPEMLS
                     NIAKAKRLAASNIPVTIVGETGTGKELFSRLIHQCSKRANKPFIALNCGALPPTLIES
                     TLFGTVRGAYTGAENSQGYLELANGGTLFLDELNAMPIEMQSKLLRFLQDKTFWRLGG
                     QQQLHSDVRIVAAMNEAPVKLIQQERLRADLFYRLSVGMLTLPPLRARPEDIPLLANY
                     FIDKYRNDVPQDIHGLSETARADLLNHAWPGNVRMLENAIVRSMIMQEKDGLLKHIIF
                     EQDELNLGVPETAPENPLPSSPDPQYEGSLEVRVANYERHLIETALDTHQGNIAAAAR
                     SLNVSRTTLQYKVQKYAIRFGVVRN"
     gene            complement(26633..28150)
                     /gene="purF"
                     /locus_tag="OQP62_000441"
     CDS             complement(26633..28150)
                     /gene="purF"
                     /locus_tag="OQP62_000441"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006820991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HCS1720080.1"
                     /translation="MCGIVGISGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFR
                     LRKANGLVNDIFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHN
                     GNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDSFRHYPLEADNIFAAIAAT
                     NRQIRGAYACVAMIIGHGMVAFRDPHGIRPLVLGKRDVGDGRTEYMVASESVALDTLG
                     FEFLRDVAPGEAIYITEKGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSAR
                     VNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRT
                     FIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVY
                     LASAAPEIRFPNVYGIDMPTANELIAHGREVDEIRQIIGADGLIFQDLNDLIEAVRAE
                     NPDIQQFECSVFNGVYVTKDVDQQYLDFLDSLRNDDAKAVLFQNEMENLEMHNEG"
     gene            complement(28188..28676)
                     /gene="cvpA"
                     /locus_tag="OQP62_000442"
     CDS             complement(28188..28676)
                     /gene="cvpA"
                     /locus_tag="OQP62_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin V production protein"
                     /protein_id="HCS1720081.1"
                     /translation="MVWIDYAIIAVIAFSCLVSLIRGFVREALSLVTWGCAFFVASHY
                     YTYLSVWFTGFEDELVRNGIAIAVLFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGI
                     CFGALRGALIVAAILFFLDTFTGLSKSEDWSKSQLIPQFSFIIRWFFDYLQSSSSFLP
                     RT"
     gene            complement(28987..29661)
                     /gene="dedD"
                     /locus_tag="OQP62_000443"
     CDS             complement(28987..29661)
                     /gene="dedD"
                     /locus_tag="OQP62_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein DedD"
                     /protein_id="HCS1720082.1"
                     /translation="MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLV
                     PKPGDRDEPDMMPAATQALPTQPPEGAAEEVRAGDAAAPSLDPSRMASNNVELDPIPV
                     ETPKPKPVEKPKPQPKPQQPVVAVSTPTPAPQPATDDKPAPTGKAYVVQLGALKNADK
                     VNEIVGKLRSAGFRVYTSPSTPVQGKITRILVGPDASKDKMKGSLGELKQISGLSGVV
                     MGYSPN"
     gene            complement(29651..30919)
                     /gene="folC"
                     /locus_tag="OQP62_000444"
     CDS             complement(29651..30919)
                     /gene="folC"
                     /locus_tag="OQP62_000444"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HCS1720083.1"
                     /translation="MKNKSIPQAASPLASWLSYLENLHSKSIDLGLERVSQVAARLDI
                     LKPAPFVFTVAGTNGKGTTCRTLESVLIAAGYRVGVYSSPHLVRYTERVRVQGKELAE
                     SAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQANLDVVILEVGLGGRLDATNIVD
                     ADVAVITSIALDHTDWLGPDRESIGREKAGIFRAEKPAIVGEPEMPATIADVAQETGA
                     LLLRRGVDWRYEVTATHWAFTDGDGTLAGLPLPQVPQPNAATALAALRASGLNIDEQA
                     IRDGIAQATLPGRFQIVSESPRVIFDVAHNPHAAEYLTGRLKMLPKRGRVLAVIGMLH
                     DKDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAA
                     QPEDTVLVCGSFHTVAHVMEVIDAGRIGGE"
     gene            complement(30987..31901)
                     /gene="accD"
                     /locus_tag="OQP62_000445"
     CDS             complement(30987..31901)
                     /gene="accD"
                     /locus_tag="OQP62_000445"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HCS1720084.1"
                     /translation="MSWIERIKSNITPTRKASIPEGVWTKCDSCGQVLYRAELERNLE
                     VCPKCDHHMRMSARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKET
                     GEKDALVVMKGTLHGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLVCFS
                     ASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNI
                     AEPKALIGFAGPRVIEQTVREKLPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAK
                     LMNLPAPNPDAPREGVVVPPAPDQESEA"
     gene            complement(32051..32710)
                     /locus_tag="OQP62_000446"
     CDS             complement(32051..32710)
                     /locus_tag="OQP62_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1720085.1"
                     /translation="MDLIYFIIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLV
                     VTPFLPGDSLLFVAGALASLETNDLNVHVMVALMLIAAIVGDAVNYTIGRLFGEKLFS
                     NPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYN
                     VIGALLWVLLFTYAGYFFGTIPLIQDNLKLLIVGIIVVSILPGVIEIVRHKRAASRAA
                     K"
     gene            complement(32759..33571)
                     /gene="truA"
                     /locus_tag="OQP62_000447"
     CDS             complement(32759..33571)
                     /gene="truA"
                     /locus_tag="OQP62_000447"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HCS1720086.1"
                     /translation="MSGQQSSPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALS
                     QVANEPINVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKT
                     VPDDFHARFSATARRYRYIIYNHRLRPAVLAKGVTHYYEPLDAERMHRAAQCLLGEND
                     FTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLLEVGAHN
                     QPESWIAELLAARDRTLAAATAKAEGLYLVAVDYPDRFDLPKPPMGPLFLAD"
     gene            complement(33571..34584)
                     /locus_tag="OQP62_000448"
     CDS             complement(33571..34584)
                     /locus_tag="OQP62_000448"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HCS1720087.1"
                     /translation="MSEGWNIAILGATGAVGEALLETLAERQFPVGEIYALARHESAG
                     EHLRFGGKSVIVQDAADFDWTQAQLAFFVAGAEASAAWIDDATNAGCLVIDSSGLFAL
                     EPDVPLVVPEVNPYVLADYRNRNVIAVADSLTSQLLAALKPLIDQGGLSRIAVTSMLS
                     ASAQGKKAVDALAGQSAKLLNGIPIDEDDFFGRQLAFNMLPLLPDREGSVRQERRIVD
                     EVRKILQDDGVMISASVVQSPVFYGHAQMVSFEALRPLAAEEAREAFSRGEDIVLSEE
                     TDYPTQVGDASGNPQLSIGCVHNDYGMPEQIQFWSVADNVRFGGALMAVKIAEKLVQE
                     YLY"
     gene            complement(34652..35788)
                     /gene="pdxB"
                     /locus_tag="OQP62_000449"
     CDS             complement(34652..35788)
                     /gene="pdxB"
                     /locus_tag="OQP62_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-phosphoerythronate dehydrogenase PdxB"
                     /protein_id="HCS1720088.1"
                     /translation="MKILVDENMPYARELFSRLGEVKAVPGRPIPVEELNHADALMVR
                     SVTKVNESLLSGTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSA
                     LLMLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRT
                     LDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALL
                     ARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIGTSHIAGYTLEGKARGTTQVFEAYSA
                     FIGREQRVALETLLPAPEFGRITLHGPLDQPTLKRLAHLVYDVRRDDAPLRKVAGIPG
                     EFDKLRKNYLERREWSSLYVMCDDETAAALLCKLGFNAVHHPAH"
     gene            35892..36893
                     /gene="flk"
                     /locus_tag="OQP62_000450"
     CDS             35892..36893
                     /gene="flk"
                     /locus_tag="OQP62_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulator Flk"
                     /protein_id="HCS1720089.1"
                     /translation="MHPISGAPAQPPGEGRNPLSAASEQPLSMQQRTVLERLITRLIS
                     LTQQQSAEVWAGMKHDLGIKNDAPLLSRHFPAAEQNLTQRLGVAQQNHANRQVLSQLT
                     ELLGVGNNRQAVSDFIRQQYGQTALSQLTPDQLKNVLTLLQQGQLSIPQPQQRPATDR
                     PLLPAEHNTLNQLVTKLAAATGESNKLIWQSMLELSGVKSGELIPAKQFTHLATWLQA
                     RQTLSLQHAPTLHTLQAALKQPLEPDELTAIKEYAQHTYQIQPQTVLTTAQVQDLLNH
                     IFLRRVEREADELEPLSIQPIYRPFAPMIETVKNLSARPGLLFIALIIVLALFWLVS"
     gene            complement(36890..38068)
                     /locus_tag="OQP62_000451"
     CDS             complement(36890..38068)
                     /locus_tag="OQP62_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1720090.1"
                     /translation="MTAVSQKTTTPSADFSLFRIAFAVFLTYMTVGLPLPVIPLFVHH
                     ELGYSNTMVGIAVGIQFFATVLTRGYAGRLADQYGAKRSALQGMLACGLAGAAWLLAA
                     LLPVSAPVKFALLIVGRLILGFGESQLLTGTLTWGLGLVGPTRSGKVMSWNGMAIYGA
                     LAAGAPLGLLIHSHFGFAALAGTTMVLPLLAWAFNGTVRKVPAYTGERPSLWSVVGLI
                     WKPGLGLALQGVGFAVIGTFISLYFVSNGWTMAGFTLTAFGGAFVLMRILFGWMPDRF
                     GGVKVAVVSLLVETAGLLLLWLAPTAWIALVGAALTGAGCSLIFSALGVEVVKRVPAQ
                     VRGTALGGYAAFQDISYGVTGPLAGMLATSYGYPSVFLAGAISAVVGILVTILSFRRG
                     "
     gene            complement(38248..38622)
                     /locus_tag="OQP62_000452"
     CDS             complement(38248..38622)
                     /locus_tag="OQP62_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720091.1"
                     /translation="MAKEWFTVKECLGLPGFPGSEPAVRERLYKYSEGKAGVRRKRVK
                     SKAEEFHISVFPLYVHRYLDDSGEEPTPEPISLQEAEPEDIWEMMFRLLTPEQRKQVT
                     GRFKVRGMKAVFLFLFDDTPPR"
     gene            38794..>39016
                     /locus_tag="OQP62_000453"
     CDS             38794..>39016
                     /locus_tag="OQP62_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1720092.1"
                     /translation="MEPKSQDWHRADIKSALEKRGITLRDLSRQAGLSPDSLRNVFTR
                     SWPRAERIIADALGITPQEIWPSRYGDMQI"
BASE COUNT         9473 a        11097 c         9773 g         8673 t
ORIGIN      
        1 tatcctgtgt cggcctgtca aaggccggta gtttaaaatc attgagtcgt caatattaca
       61 catagtatgc cattggctga aaaatacgca aaatggcata gactcaaagg tatttcttcc
      121 atcatgccca aaaaaactcc tgcgcatgat gttaatcata aatgtcaggg ctatcatgcg
      181 ctacgctcta tggctcactg acgttttttt agccacgtat cataaatagg tacttccatg
      241 tcgagtaagt tagtactggt tctgaactgc ggtagttctt cactgaaatt tgcaattatt
      301 gatgcagtta atggtgatga atacctttct ggtttagccg aatgtttcca tctgccagaa
      361 gcacgcatca aatggaaaat ggacggcagt aaacaagaag cggctttagg tgcaggcgcc
      421 gctcacagtg aagcgctgaa ctttatcgtt aacactattc tggcacaaaa accagaactg
      481 tctgcgcagt taactgcaat tggtcaccgt atcgtacacg gcggcgagaa gtataccagc
      541 tccgtagtca ttgatgagtc cgtcattcag ggcatcaaag attccgcctc tttcgcaccg
      601 ctgcataacc cggctcacct gattggtatc gccgaagcgc tgaaatcttt cccgcagctg
      661 aaagataaaa acgtcgccgt gttcgacacc gccttccatc agaccatgcc ggaagaatct
      721 tacctgtatg ccctgccgta cagcctgtat aaagaacatg gcgttcgtcg ctatggcgca
      781 cacggcacca gccacttcta tgtaactcag gaagcggcaa aaatgctgaa caagccggta
      841 gaagaactga acattatcac ctgccacctg ggcaacggcg gttctgtttc cgctatccgt
      901 aacggtaaat gcgtggatac ctctatgggt ctgaccccgc tggaaggcct ggtcatgggt
      961 acccgttccg gcgatatcga ccctgcgatt atcttccacc tgcacgacac tctgggcatg
     1021 agcgtggatc agatcaacaa aatgctgacc aaagagtccg gtctgctggg tctgactgaa
     1081 gtgaccagcg actgccgtta tgttgaagac aactacgcca ccaaagaaga cgcaaaacgt
     1141 gcgatggacg tttactgcca ccgcctggcg aaatacatcg gttcttacac cgctctgatg
     1201 gacggtcgtc tggatgcagt cgtgttcacc ggcggtatcg gtgaaaacgc cgcgatggtt
     1261 cgcgagctgt ctctgggcaa actgggcgta ctgggctttg aagtcgacca cgaacgtaac
     1321 ctggcggccc gcttcggcaa atctggtttc atcaacaaag aaggtacccg tccggcggtg
     1381 gtgatcccaa ccaacgaaga actggttatc gcgcaggacg cgagccgtct gactgcctga
     1441 tttcacaccg ccagcctcgc tggcggtgct gttttgtaac ccgtccccaa aagacggtaa
     1501 cgaaagagga taaaccgtgt cccgtattat tatgctgatc cctaccggaa ccagcgtcgg
     1561 tctgaccagc gtcagcctcg gcgtcatccg tgctatggaa cgcaaaggcg ttcgtctgag
     1621 cgtctttaag cctatcgccc agcctcgcgc tggcggcgat gcgcctgacc agaccaccac
     1681 tatcgttcgc gcgaactcta ccctgccggc ggctgaaccg ctgaagatga gccacgttga
     1741 atctctgctc tccagcaacc agaaagacgt gctgatggaa gagatcatcg caaactacca
     1801 tgcgaatacc aaagacgcgg aagtggtgct ggttgaaggt ctggttccga cccgtaaaca
     1861 tcagttcgct cagtctctga actatgaaat cgcgaaaacg ctgaatgcgg aaatcgtttt
     1921 tgtcatgtct cagggtaccg acacgccaga acagctgaac gagcgtatcg aactgacgcg
     1981 cagcagcttc ggcggcgcga aaaacaccaa catcaccggc gttatcatca acaaactgaa
     2041 tgcgccggtt gatgaacaag gccgtactcg cccggatctg tcagagattt ttgacgactc
     2101 ttccaaagcg caggtgatca aaatcgatcc tgctaaactg caggaatcca gcccgctgcc
     2161 ggttctgggc gcggtgccgt ggagcttcga cctgattgcg acccgcgcta tcgatatggc
     2221 gcgtcacctg aacgccacca tcattaacga aggcgatatc aaaacccgcc gcgttaaatc
     2281 cgttacgttc tgcgcgcgca gtattccgca tatgctggag catttccgcg caggatcgtt
     2341 gttagtgacc tcagctgacc gtccggacgt actggtcgca gcttgcctgg ccgcgatgaa
     2401 cggcgtagaa atcggcgccc tgctgctgac cggcggctat gaaatggacg cgcgcatttc
     2461 taaactgtgc gaacgcgcat tcgccaccgg tctgccggtc tttatggtga acaccaacac
     2521 ctggcagact tcgctgagcc tgcaaagctt caatctggaa gttccggttg atgaccatga
     2581 gcgcatcgag aaagttcagg aatacgtcgc gaactacgtt aacgctgact ggatcgagtc
     2641 gctgaccgcc acttccgagc gtagccgtcg tctctctccg ccggcgttcc gctaccaact
     2701 gactgagctg gcgcgtaaag ccggtaaacg cgtagtgctg ccggaaggcg acgaaccgcg
     2761 taccgtcaaa gcggcggcaa tctgcgctga acgcggcatc gccacttgcg tactgctggg
     2821 caacccggat gaaatcaacc gcgtcgcggc atctcagggc gtagagctgg gcgcaggtat
     2881 tgaaatcgtc gatccggaag tggtgcgtga aagctatgtc gctcgcctgg ttgagctgcg
     2941 taagagcaaa ggcatgaccg aaccggttgc ccgcgaacag ctggaagaca acgtggtgct
     3001 cggcacgctg atgctggagc aagacgaagt cgacggcctg gtttccggcg cggttcatac
     3061 caccgccaac accatccgtc cgccgctgca gcttattaaa acggcgccgg gtagctccct
     3121 ggtctcttct gtgttcttta tgctactgcc ggaacaggtt tacgtttacg gcgactgcgc
     3181 aatcaaccca gacccgactg cagagcagct ggcagaaatc gcgattcagt ctgcggattc
     3241 cgccattgcc ttcggcatcg aaccgcgtgt ggcaatgctc tcctactcca ccggcacctc
     3301 tggcgcgggc agcgacgtag agaaagtacg tgaagcgacg cgtctggcgc aggaaaaacg
     3361 tcctgacctg atgatcgacg gtccgttgca gtacgacgcc gcggtcatgg ctgacgtagc
     3421 gaaatccaaa gcgccgaact cgccggttgc gggtcgcgct accgtgttca ttttcccgga
     3481 tctgaacacc ggtaacacca cctacaaagc ggtacagcgt tctgccgacc tgatctccat
     3541 cgggccgatg ctgcagggta tgcgcaagcc ggtgaacgac ctgtcccgtg gcgcgctggt
     3601 tgacgatatc gtctacacca tcgccctgac ggcgatccag gcttctcaac agcagcagta
     3661 acagtaaaag ctaatgccgg atggcggcgt gaacgccttg tccggcctac aggtgagata
     3721 ccgttgtagg ccggataaga cgcgttagca tcgccatccg gcattctgct atttaccctg
     3781 caaagcggaa ttttttgctt aactgcgctg catcaatgaa taactattcc cttcttctca
     3841 tacttggcct ctttgctttg caacagggat agtccgtcat gtctgtcgtt acagaatcaa
     3901 aaacagccag aaaatgggca atgcccgata cgctggtcat catctttttt gtcgccattt
     3961 taaccagtat cgccacctgg gtcgtccccg ttgggatgtt tgatagccag gaagtgcagt
     4021 atcaggtcga tggtcagaca aaaacccgca aagtcgtcga cccgcactct tttcgcattg
     4081 tgaccaatga ggccggggaa gcgcagtatc atcgcgtaca atttttcact accggcgatg
     4141 aaagaccagg gctgatgaat tttccgtttg aagggttaac atccggatcg aaattcggca
     4201 ctgccgtcgg catcattatg tttatgttgg tgattggcgg cgcattcggc atcgtgatgc
     4261 gtaccggcac cgtggataac ggcattctgg cgcttattcg ccacacgcgg ggcaacgaag
     4321 tcctgtttat tccggtgcta tttgtcctct tttcgttagg gggcgccgta tttggcatgg
     4381 gcgaagaggc ggtcgccttt gcaattatca tagccccgct gatggtcagg ctgggctatg
     4441 acagcattac caccgtcctg gtgacctata tcgccaccca aattggcttt gccagttcgt
     4501 ggatgaaccc gttttgcgta gtcgtcgccc aggggattgc cggcgtgccg gtactttccg
     4561 gctccgggct gcgtattgtg gtctggattg tcgccacgct gattgggctg gtttttacgc
     4621 tggtctacgc ctcacgcgtg aaaaagaatc cgctgctttc ccgcgtccac gaatccgatc
     4681 gctatttccg cgaacagcag gatgaagtcg tccagcgccc tttcaccttc ggcgactggc
     4741 tggtactgct ggttctgacc ggcgtaatga tttgggtcgt ctggggcgtg attgtccacg
     4801 cctggtttat tccggagatc gccagccagt ttttcaccat gggcgtggtg atcggcctca
     4861 tcggcgttat cttccgcctc aacggtatga cggtcaacgt gatggcgtcc tcattcaccg
     4921 aaggggcgag gatgatgatc gcgcccgcct tgctggtggg ttttgccaaa ggcattctgc
     4981 tgctggtcgg caacggcgaa gccggggaac ccagcgtgct caatacgttg cttaacagta
     5041 tcgcgcatgg catcagcggg cttaataatg ctatcgccgc ctggtttatg ctgctcttcc
     5101 aggcggtatt taatttcttt gtcacgtccg gttcgggcca ggcggcgtta accatgccat
     5161 tactggcgcc gctcggcgat ctggtcggcg ttaaccgtca ggtgactgtt cttgccttcc
     5221 agtttggcga tggcttcagc catattatct atccgacatc agcttcgctg atggccacgc
     5281 tgggcgtgtg ccgggtcgat tttcgcaact ggcttaaagt gggggcgtcg ctgctgggac
     5341 tgctgtttat catgtccagc gtggtcgtga ttggcgcgca gatgatggga tatcattgat
     5401 ccaaaatgcc ggatgagcat cagcgccatc cggcaatatc tccatgatta aagcagtgat
     5461 ttcgcggctt ctacaatcgc tgcggcggtg agtccgtact cttgttgtaa gaaatcctgc
     5521 gttcctacct gcccataacg ctctttgacg ccaacacggc gcatcggcac cgggcagttt
     5581 tccaccagca cttccgctac cgctgaccct agtccattat ggatactgtg gttttcacac
     5641 gtgacgatac gccgcgtttt ttccgcgtag tttttcacca acatgcgatc gataggcttt
     5701 aaggtgaaca tatcaatgac cgcagcgctc acgccttcct gctccagttg gcgcgccgcc
     5761 tccagcgcct ccgccaccat aatgccgttg gcgataagtg taatatcatc gccctcgcgc
     5821 agtacgttgc ccttgccaat ggtaaaggta gagcctggcg catagatact cgtcgcctgc
     5881 ttacggatgg tacgcagcca gtaaaaaccg tccaggtcca ttagctggcg taaaatattc
     5941 gcgaacatca ccgcatccgt cacctccagt actacagagt gcgccagccc gcgaacaatc
     6001 cccatatctt caaaagacat atgagtgccg ccgttatggc acgccgtcac tccggcatcg
     6061 gaggcgatca ctttgacgtt gttacgctga taatccagcg ccataaagag ctgatcaaaa
     6121 cagcgacggc tggcaaaagc ggtaaaggta tgcacaaacg gtttgcgacc ggtcagcgcc
     6181 agtcccgccg ccgtgccaat cacattcgcc tccataatac cgcagttaat gacatgctgc
     6241 gggtagtcac gcgccacgct gtccatcgcc atcgagctca ttaaatcagc ctcaagcgca
     6301 ataattgggc ttccggcctc aatctgcccg gcgacaaaac cggcataaac tttgcgcatt
     6361 tcgatatcgt ctttaagccc tgcgggcgca agcttaatca tgcatgacct ccagttgatg
     6421 aatggcctca ttgagcgtct gcttcatgcc atccgtcagg cgtaagtggt gagaattcgt
     6481 taactgctcc aggcatggca ccccctgccc tttaatgctg tcaaggatca caacccgtgg
     6541 ccgggcatca gcgggcggca caggctgaac caccgccagt agtccggcga tatcatcgcc
     6601 tttgacggtg acgacatcga aaccaaacgc gcggaatttc ccttccagat cgaatggatt
     6661 gataatctcc tccagctcgc cgtcaagctg ttgtttgttc cagtcaatga aaacggtcag
     6721 attattcagg cggtggtggg caataaactg aaacgcctcc cagcactgcc cttcattcag
     6781 ctccccatcg ccgacaatgc aaaatacccg gttgggtcgc cgcgccagtt tatgcgacaa
     6841 cgccattccg cccgcaatag agatgccttg tcccagtgag ccggtcgtgg cgtccacgcc
     6901 gtgcgttttt agccgatccg gatggctggg aagacgggtg ccgttctggt taagcgtatt
     6961 cagctcttcg cgcgggaaat agcctttaat cgccagggta ctgtacaacg cggggcccgc
     7021 atggcctttc gacagtacga agtaatcgcg ctccggccag tccgggtcgg cagggtcgat
     7081 tttcatcacc gcgccgtaca gaaccgccag agtctccact accgacatgc tgccgccata
     7141 gtgaccaaag ccaagatggt ttaaggattt gagcgtggcg acgcgaatgt cgcgcgccag
     7201 ttgggtgatt tcggttacgt tcattctttc gctccgctat tttcctgcac ttcggcagtc
     7261 gcttttttgc ttttggccaa cacgttgtac gccaccagta gcgcgaatag cgccaccacc
     7321 agccccgtga tagccatcgg cgacagataa cgcgccaggt tgcccagcaa aataccgatt
     7381 acgccaaagt cagcatccga gaacgtggta ttggcgaagc cgatcgcgcc gagaaccggc
     7441 agtaacagca ctggcaggaa agtgattaat agaccattag caaatgcgcc gatcatcgcc
     7501 ccgcggcgac cgccggtggc attgccaaag acgcctgcgg tcgcgccggt aaagaagtgc
     7561 ggcacaacgc caggcaggat taacacaagc ttcatctgtc caagcaggaa cagccccacc
     7621 agcccgccga gaaaactgaa caggaagcca atcagtaccg cgttaggggc atagggatac
     7681 accaccgggc agtccagcgc cggacgcgcg tttggcacca gtttttctga aaagccggta
     7741 aaggccggaa caatttccgc cagaatcaga cggacgcctt gcagaatgat gaatacgccg
     7801 gcggcgaagg tgattgccat gataatggcg tacaccagat agttttgccc gccgctaaac
     7861 gtcgcttcga catactcacg ccctgcgctg actgccatga tcagatagat aatcatcatg
     7921 gtcagcgaaa tcgagataga actgtcgcgt aaaaaactga ggtttttcgg caggttcatc
     7981 tcttccgtgg agcgggagcc tttaccacac aggctgccaa tccagccgga aagcacatat
     8041 cccagggtac cgaagtgacc aaacgcaatg tcatcggtac cggtaatccg cctcatataa
     8101 cgttgggcca acgccgggaa gaaggccatc accagcccca ggattagcga tccggtgaag
     8161 accagcccta cgccctcaaa ccccgccacg gtcaggatta cgccaatcat acaggccatg
     8221 taaaaggtgt gatgtccggt caaaaagata tatttaagac gcgtaaagcg cgccacgaca
     8281 atattggcca ccataccaaa tgccataatt aacgccgtgg acgcgccata tttttccagc
     8341 gcgattgaga ctatcgcttc attattagga ataataccct gaatattaaa agcgtgttca
     8401 aacatacccc ctagcgggtt taatgaaccc accagtacgg ttgcgccacc gccaagcaca
     8461 ataaaaccta aaatggtttt aatcgtgcct tttaccacat cggaaaacgc ttttttctgc
     8521 gccaccagac caatcagcgc aattaaccct acaagcaccg atggcacttt taaaatatca
     8581 acaacaaaat tcagcgtttc aaggataaac atatccacct cgccagcaat aattattgtt
     8641 tagcgaacca tgcgcgcagc tgcgtttcca gttcgttgat gtcgatgatg ttattgatca
     8701 ccaccagttg gctttccggt acgctggcgc tggccgcgat atctttggcc attacaaaaa
     8761 gatcggcagc cccgggtgtg gccgatgaga gatcggagtg ttccacttca gcgtcaatat
     8821 tgagtttctt taatactttt ttaatgttca tttctaccat aaaactacta cccaggccgg
     8881 aaccgcaaat tgccatgatt ttcattattg tcacctttta aaagtagagt tggtctgcat
     8941 cacgcacggg cgcaatgtta tttaccgcaa gaaaatggaa taaaatcaga aacggtcaat
     9001 aatcgtttta atgtcctcca ggttttttgc ctgatgtaat ttttccatat ctacatcact
     9061 ggaaaataat tccgccagag ccgatatcat ttcgatatga ctgtgcttat caggcgccgc
     9121 cagcataata atgatgtcaa ccggatcgaa ttcgtctgcg ccaaatgaaa cgccgcgctg
     9181 tagtttcagt aacgataaac ctaacccttt cgccccctct tccggcctcg catgcggcat
     9241 cgctaaccct ggcgctaata cataatacgg cccaagcttt tggtgctgct gaacaatcgc
     9301 cgtaatgtat tccggtgcga taacacctgc gtccagcagg ggtttgccgc aaatttccag
     9361 cgcctgcggc cacgtttcca cgctctcccg tagcgtgatg gttgcgtcag ataaccaggt
     9421 tcccagcatg ttattcgccc ccacggtgta tgaaattatg aacaaacttt attcaagcca
     9481 ttcgatatta gctgcgatcg ttatcacaaa gatagcgcta ccagcgacta ttactcagaa
     9541 ttgtgatagc gctatcaaat taaaatcatg gtgtgaaatc acagcaaaaa agcggattta
     9601 aggcgtatac tgccagtcat gcgaagcaaa gaacgacaat aaaaaagcat ctcaacatgt
     9661 tgtaatgacg caggaatttg tatgtcgata ccccgtaaac ggcgcagtac cggtaaagtg
     9721 actatcgccg atgtagccca acttgccggt gtaggcacga tgaccgtatc acgagcctta
     9781 cgcacgccgg aacaggtctc tgataaactc cgggaaaaaa tcgaagcggc agtgcatgag
     9841 ctgggctata tgcctaatct cgccgccagc gcgctggcgt ctgcctcctc gcacaccatc
     9901 gcgatggtcg taccgaacct tgcggaagcg gggtgttctg aaatgttcgc cgggctgcaa
     9961 caaattttac agcccgcagg ctaccagata atgctggcgg aatcgcagca tcgcgtggaa
    10021 caagaggaga agctgctcga aacgctgctg gcttccaaca ttgccgcggc gattctgctt
    10081 agcgtcgaac atagcactac cgtgcgccag tggctgaaaa atgcctctat cccggtgatg
    10141 gagatgggcg cgattcgcag cgatcctatt gatatgaata tcggtattga taacgttgca
    10201 gcaatgtatg agctgacgga aatgctgatt cagcgcggtt accagaatat cgggctgcta
    10261 tgcgccaatc aggagcagtg gatttttcag caacatctgc acggctggta caaagcgatg
    10321 cttcgccacc atatgtcgcc aaaccgggtg attaatgccg ccttgccgcc caatttttct
    10381 accggcgcgt cgcaactgcc ggagttttta ctagcatggc cggagctgga cgcgctggta
    10441 tgcgtatcgg atgagctggc ctgcggcgcg ttatacgagt gccaacgacg gcggatcaaa
    10501 gttccggacg atttagcggt ggtcgggttt ggcgatagcg atgtcagccg ggtctgccag
    10561 ccgccgttaa ccaccatggc cgtaccgcac cgtaagattg gcagtgaagc cggacgggcg
    10621 ctgttggaaa ggttaaatca gggaaactgg agcgatcgaa aatctatcgc ctccagttta
    10681 tgtatgcggg aaagctgcta aaacgcttat tccgtctctt ccggtttctc ctgaagcgcg
    10741 gcttcgtttt tggcgttgcg ggtcatccac agcgccagcg ctttgagcga gtccggcgta
    10801 aattcatcac agcgcgcggt gatctcctcc ggagtcagcc aacacacttc gctgacttca
    10861 tcttcctgaa gcgcgaaagg cccgtgggaa acgcagctaa acagcgcgcc ccaaacccgg
    10921 caatgttggt cttcaaagta aaacagaccg tgttcggcaa acggcacgcc tgcaataccc
    10981 aactcttctt ccgcttcgcg gcgggcagat tccagtagct gctcatcagc ctggaccacg
    11041 ccgcctgcgg tagcatctaa cataccgggc aaaaaatctt ttgtttcggt acgacgctgc
    11101 accagaattt tacccatacc atcatgaacg acgatatacg tcgcacgatg ccgtaagcgt
    11161 tgcgcacgca tctgttcccg gctggactgt gcaatgactt cattgtcttc attcacaata
    11221 tccacccatt ccgtacttgc caaacgacgc tgttccacca tcaggaaacc ttcttatttc
    11281 tggcgctctt acggcgcatt tacgtttgtg aggtaaatta cgagttaatt gcaacctgcg
    11341 caatgatact ttgatcattg agtgcgatta cgctcaacac attatcatcc agaataccgt
    11401 agcttgctgc atacccgcct ttcgggatgc tcactgaccc aggattaaag tgatacagtc
    11461 cttcctgctg ttgcgccacc ggcagatgcg tatgaccata gaccaacaca tcgccagtat
    11521 gcagagcggg cagattcgtc ggcccgaaga ggtgcccatg cgttaaaaat agccgcctct
    11581 cttgcgtcaa tatttgctgc cacggtgcag ttatcgggaa atgcagcagc atctgatcca
    11641 cttcgctatc gcagttgccg cgcacggcaa tgatttgcgt cgccaccgcg ttcaggcgtt
    11701 cggcaacctg ggcgggcgca tagccttcag gcagcgcatt gcgcggcccg tggttaagga
    11761 catcgcctaa tatcaccagc caacgcgcgc cgctttgcgc gaaccgctca agcacgcgtt
    11821 ccgtggcggg taaagaacca tgaatgtccg atgcgaacat cagtttcatc gctcactcct
    11881 cattgtgaaa aacggcgtta tgatactgga atatgaatag attttcagcc tgaacgcttc
    11941 gaggaaagcg caataaaacg ctgtacggaa gcacgctgcc actgaaatgt cgcatacgcc
    12001 gccagcgacg ccggcacgtc atcgccatgc agcaccagac gattgatcat caatgccaga
    12061 tcggtatcgg caatgcacca ttcaccaaat aaattttgcg tcccctgccc caatagcgct
    12121 tcagccgtcg caaacagttt tgccgcactg gcttttccag cctcgcttag cggcgctttt
    12181 ttcgccccgg caaacaccac gtcggtaggc cgttcttcgc gaagcggcag taaatcgctg
    12241 cgtagccacg cctgaatctg tcgcgcgcgg gcgcgttttt gtaaatcgtg cgggtagata
    12301 cgctcccact gcggcggcgc gaaacgctcc tccaggtatt ccgcaatagc ggacgactcg
    12361 ctcagctcaa aattgtcggc ctcaagcacc gggacgcgct gcgtcagcgc atatccccgc
    12421 cagccaggtt gcagatgttc tccctggtcc agatcgcggg ttttcagagt aaaggaaagc
    12481 cctttttctt gtaatgccac ccaggcggac aagacgtagg gagagaaaaa gttcgcatcc
    12541 gaccacagca caataacagg cttactcata atgtcctctt gagggcgtat taggtttctt
    12601 cccaaaatat agcgtctttc gcctgctgtc acctgatgaa aactcacaca catcaggagg
    12661 ctttctatac ttaattcagc ccagactctt tacgcacatg caggagccaa aatgattgac
    12721 ctttactacg cccccacgcc caacgggcat aaaataatgc tgtttctgga agaggcggag
    12781 ctggcgtatc gtttgctaaa agtagatatc agcaagggca atcagtttcg ccctgatttt
    12841 ttggctatct ctcccaataa taaaattcct gccatcgtcg atcacgcccc ggcagacggc
    12901 ggtcaaccgc ttagtctttt tgaatccggc gaaattcttc tctacctagc ggaaaaaagc
    12961 ggcaaactgc ttagcgggga gctgcgtgaa cgccatacca cgctgcaatg gctgttctgg
    13021 caggtcggcg ggttagggcc gatgctgggc cagaatcatc actttaacca ctttgcgcca
    13081 caggccatcc cctatgcgat tgaacgctat caggttgaaa cgcaacgctt atacaacgtc
    13141 ctgaataaac gcctggaaac ctccccgtgg ctgggcggcg accactacag tattgcggat
    13201 atcgccagtt ggccgtgggt taacgcacat cagcgtcagc gaatcgatct tgatacttac
    13261 ccggcggtgt ataactggtt tgaacgcatt cgcacgcgtc ctgcgacagc gcgcgcactg
    13321 ttacaagcgc aactgcactg taacagtacg aaagcgtaac gcggtagcat acatcatgta
    13381 tgatgtagag gtgtatacac ggaaaacctg cgtccggcac ccttattcgt attaaaaacc
    13441 tgacattagg gaagaggaaa tcctccctac tctggaggtc atatgcagat tctgattacc
    13501 ggcggtacgg gcctgatagg gcgtcatctc attccccggc tgttaatact ggggcaccag
    13561 gtgacggtcg ttacgcgcaa tcccgataac gcgcgtcaga ttctcgattc cagagtgaca
    13621 ttatggaaag ggctggcgga acgtgagcac ctcaatgaga ttgatgccat catcaatctg
    13681 gcgggcgaac cgattgccga caagcgctgg acgtcgcaac aaaaagaacg gttgtgccaa
    13741 agccgctggg ctatcacgca aaagttggtg gatttaattc atgccagcgc tacgccgccc
    13801 tcggtgttga tatccggctc cgccacgggc tattacggcg atctgggcga cgttgtcgtc
    13861 actgaagatg agccgccgca caacgaattt acgcataaac tttgcgcccg ctgggaacag
    13921 attgcctgtc gtgcgcagag cgaccagacc cgcgtctgcc tgctgcgtac cggcgttgtc
    13981 ctggcgccgc aaggcgggat tctggggaaa atggttccgc cgtttcgcct cggactcggc
    14041 ggtccggtgg gtaatggtcg gcaatatctg gcctggattc acattgacga tatggtcaac
    14101 ggcatcctgt ggctgctgga taacgatctt cgcggtccct tcaatatggt ctcgccgtat
    14161 cccgtccata atgagcagtt tgctcatgcg ctgggtcgcg cgctgcgccg cccggcgatt
    14221 attcgcattc cggcgacggc aattcgctta ttgatgggag agtcgtcagt gctggtactg
    14281 ggcggacagc gggcgctgcc aaaacggctt gaagccgccg gattcgcatt tcgctggtat
    14341 gatttagaag aggcgctggc ggatgtgatt cgctaattcc caaagcgccg tatcctgccc
    14401 ggtaagcgat gcgccgccgg gcttctttta tttcagcgag cctttcagga attgctgtaa
    14461 acgcgggctt tgcggattgc cgaacacctg ctccggattg ccctcttctt caattttccc
    14521 ctgatgcaga aaaatcacgt gcgaagagac atggcgggcg aagcccattt catgcgtgac
    14581 caccaccatc gttttgcctt cttccgccag ttgttgcatg atgcgcaaca cttcgccgac
    14641 cagttcagga tcgagcgccg atgtgggttc atcgaacagt aaaacgtcag gttccatcgc
    14701 cagcgcgcgc gcaatagaaa cgcgctgctg ttggccgccg gagagatgga cgggatattt
    14761 gccctgagcg cgctcatcaa tccccacctt cgccagatat ttcaacgccc gctcgcgcgc
    14821 gtcgtgcttg cttaatccca gtacctgaat cggcgcttcc atcacatttt ccagcaccgt
    14881 catgtggttc cagaggttaa agtgctgaaa caccatcgtc aggcgggtac gcaacaagcg
    14941 tagctgattt ttatccgcca ctttgagctg cccgtctttg tcgcgcacca gattaatgtt
    15001 ctgaccgttc acgataatcg cgccttcgct cgatttttcg aggaagttaa tgcagcgcaa
    15061 aaaagtgctt ttaccggaac cggacgagcc gataatgcta atcacatctc cggcgcgggc
    15121 ctgcagcgat acccctttca gcacttcatg accgccgtag cgtttgtgca aatcgataac
    15181 gtgtaattta ttttctgaca tcatgttact cgaattattt agaggacacg tgctgcaacc
    15241 agcgtctttc cgcccggcgg aacaggctta tcaggacata cgaaatgagt aaatacaaca
    15301 cggcggcaat gccaaacgcg gtaaacggct ggtaagtcgc tgagttaata tcgcgggcga
    15361 ttttcaacaa atccggcacc gtcgcggtaa acgccagcgc cgtagagtgc agcattaaaa
    15421 tcacttcgtt gctgtaggca ggcaaggcga tgcgtaatgc cgacggcaaa ataatgcagc
    15481 gatacatttt aaatgacgag aagccatacg ctcttgccgc ttcaatttca ccgtgcggta
    15541 ccgaacgaat cgctccggcg aaaatctccg tagtgtatgc gcaggtattc agcgtcagcg
    15601 ccagtacggt acagttcagt ccgctgcgga aaaacgcgtt aagaagatcg gtgcctttga
    15661 ctatctccag cgtatacatc cccgaataga acaccagtag ctgtacgtac agcggcgtgc
    15721 cgcgaaaaat atacgtaaac agccagatgg gaaaacggat gaatttatta ctggaaacgc
    15781 gacccaccgc cagaatcacc gccagaagac cgcccatcac caccgatgaa attaacaacc
    15841 acagcgtaat cgccacgcct gtaaaacgat agccatccgt ccacagcagg gatttccagt
    15901 actcctgaat gatctcaatc acaaatcggc cctcttcacg cctacggaat agcgacgctc
    15961 aagtaagagc agcacaccat tggaaacggt ggtaaatacc aggtagataa gtccacagac
    16021 cacggcaaaa tagaaaggct cccaggtgct tttaccggca agctgcgtgg ctttgacgac
    16081 atcttccagg cccagcagcg acaccagcgc tgtcgctttg agtatcacct gccagttatt
    16141 gccgatcccc ggcagggcgt aacgcatcat cgccgggaac ataatccgcc ggaaggtttg
    16201 cccgtgggta aaaccaaagg ccgtcgccgc ctcgatatgg cctttcggta ccgccataaa
    16261 cgcgccgcga aaggtttcgg taaaataggc gccgtagatg aaaccaaggg tgataatacc
    16321 ggccaccatc ggatcaatat ctatctggtc gatacccagc gaatcggtca ccacgttaag
    16381 cgcgatttgc aatccgtaaa atatcagcag cattaatacc agatccggca ccccgcgaat
    16441 cagggtggtg tacccttcaa aaataagccc cgttacccgg ttttgcgaaa gcttcgcccc
    16501 cgcgccgacg agaccgataa gcacggccag caccacggaa ctgagcgcca gttccagcgt
    16561 gacgatcgcg ccctgtaaaa ttacgcctga aaacccgtac aacatgcagc ctgtcctgtt
    16621 gtgtgtggtg aagtaagaag cctcttttgc atttttgcct cacatcacgc cggatggcgg
    16681 ctgtgccttg cccggcctac gatgctcccc gtaggcctga cgcgcacagc gccctcaggc
    16741 aatgcagaca gtcaatattc tttgggcttt atctgcaccg acggtgatta accgccataa
    16801 acatcaaaat caaagtactt tttcgccaac ttttcgtaag taccgtcagc acgcatttca
    16861 gcaaaggctt tgttcagcgc ttcgcgcagc tcgttatcct ctttgcgcag ccccataccg
    16921 gttcctacgc cgaataactt ctcatctttc accgccgggc cgccgaattt atagtctttt
    16981 ccgatgggct gtttaaggaa accttcgctg gccgcgacct cgtcctggaa cgccgcatca
    17041 atacggccag ccgtcaggtc ggaataaatg ttgtcctgcc cctggtaaga gacgatctca
    17101 atccctttcg gcgcccagtg ctcattgccg aaggtctcct gcgtcgtccc ctgtagcacg
    17161 ccgacgcgct tgcctttcag cgacgcgacg gtcggctgaa tatcagagtt cttcgccacc
    17221 accagacggg aatcagcggc gtaaagcttg tcggtaaacg cgatttcctg ctggcgcttt
    17281 tcagtgatgg acagcgagga catgatggca tcaattttct tcgcttttaa agacggaatc
    17341 agcgcatcca gcgggttttc cacgaacgta cactgtgtgt tgatacggtt gcacagttct
    17401 ttggccagat cgatatcaaa gccgaccaat tcaccttgtg catttttgga ttcaaacggt
    17461 gcgtatgtag gatcggtacc gatgcgaatc ttttgtggaa tagcggcaaa tgctgcggta
    17521 gcgctggaaa atgccagcac cagagaaagg gataacgcca gttttttcat aactatcctc
    17581 aacagactgt ctttccagga gatctttaca gatccgatgc gactatcgtg ccattaatca
    17641 ggccgacaag gcaaagcatt ctaccttgtc agccggttta ttttgcataa aaatcgatta
    17701 agtatgcatt tatgcgcctg ttccgcaacg gcttatgcac caaaaaggtg caaaacatct
    17761 attttgcacc gtgatagttc cccagcgcgg cgcgttatcc ccttccctca atcgccgtag
    17821 acattaaaat cgaagtactt tttggccatt ttgtcgtaag ttccgtcctg gcgcagttcg
    17881 gtcagcgctt tatcaaacgc ggcttttagc tcggtatcgt ctttgcgcag cccaaccccc
    17941 gtcccgtcgc caaaatattt tttatccttc acggaaggac cggcaaacgc atactctttg
    18001 cccgctggct gcttcaggaa accttcgctg gcggcgactt catcctgcaa tgcggcatcc
    18061 agacgaccgg cggttaaatc ggaatagata agatcctggt tggcataagc caccacatcc
    18121 acacctttag tgcgccagtt atcattggcg taagcctctt gcgtggaccc ttgcagcacg
    18181 ccgacatgct tgcctttcag cgattccagc gtcggctgaa tgggagaccc ttttgccgca
    18241 atcaggcgtg aatccgccgc gtaaagtttg tcggaaaacg caatttcttg ctggcgttta
    18301 tcggtaatag agagcgatga aataatggca tcgatttttt tcgcttttag tgagggaata
    18361 agcgcatcaa agtcgctggc gacccaggta catttcacct gcatacgctt acacatttca
    18421 ttaccgagat cgatatcaaa gccaataaag tcgcctttgg catctttcga tgagaaaggc
    18481 gcgtaggtgg tatctgttcc aatacgaacc gtttgcggga gcgcggcgta actggccgcc
    18541 gtcgcgccca gacctatcag caaagacaaa gcgagaacgg tcttcttcat acatacccct
    18601 caagtggcgt cattttctta tgttttacgt ggcgttgtgt gtttgcagac tttttcatgc
    18661 aggtcttatg ccattttcac gtcagcaaaa cgattcgacg ttaaatttgt taataaaacg
    18721 ttgcaatatt gtcctgatgt tgaagatagc aggtatgacg gttgaaccgc agcgtttcgg
    18781 cggcttttaa cgaattaaat gttgaggata tgatcgcggt tacaaaattg ccctgaaaca
    18841 gggcaacagg gacaataatg cacgctaaac agacaacgct atgcgccctg ccagcgaaca
    18901 aaaaggtcgt gcggaagggg gatgtcaaat tgatccaaca ctcggttaac cgtttgattt
    18961 ataacatcat ctaacgtctg aggaaggtga taaaaagccg gaaccggcgg cataatcacc
    19021 gcgcctatct cagcggcctg ggtcattaaa cgcaaatgcc cgatatgcag cggcgtttcg
    19081 cgcacacaca gcaccagagg tcgccgctct tttaatatca catccgccgc gcgggtaagc
    19141 agtccgtcag tataactgtg gacaatcccc gacagcgttt taatcgaaca gggcaggata
    19201 accattcctg ccgtcgggta agagccggag gaaatgctgg cggcaatgtc gcgcgcatcg
    19261 tgcgtcacat cggccagcgc ctgcacctcg cgcagcgaaa aatgggtctc cagcgccagc
    19321 gtttgccggg ccgcctggct catcaccaga tgcgtttcca cgctatcgac atcgcgcaaa
    19381 atttgtaata agcgcacgcc ataaatcgct ccgctggcgc cgctaatacc tacaatgagt
    19441 cgtttcatgt cctcttaccg tttacgagcg ccgttcatcc cactgtgtta cgtaaccggc
    19501 tcaaagtggg tctgaagaga taccatgaca aaagaatccc tatcataaaa gccagctcaa
    19561 ccaacattat cactactccc tgctcactaa actaggtgcc gaccataatg gcaaaattgg
    19621 tgataatgac aaatcgggcc gtccagggaa aaagcggcga tcgatagcgt agcaaatcgc
    19681 tggcgtacgt gccattacgc accgattgtc ggaagcgata ctggcaccat ccgatggtta
    19741 tccatgccag gcaacccacc tgcccggtac tggcgatcag atataaataa aattgctgtg
    19801 cgggaatata gcgggtcagc aacgacacca acgccagcaa ggccgtgatt aaaatagcat
    19861 acaccggcac gccgccgccg ttcgttttac caaagcaggc tggcgcaaag cgatcgcccg
    19921 ccatagacca cagcatacgc gaactggcgt aaatggccga gttagcggca gaaaccgcgg
    19981 cggaaaagat caccagcgtc atcagcgtat ccgcccccgg aatgcccgcg tgggagaata
    20041 cccatacaaa gggactttgt ccatttggcg tcagttcatg cggatagacc agcgccagca
    20101 ccgcaatcgc caggccgtaa aacaaaatga ttctgagacc gatccccagg atcaccttcg
    20161 gtaaaataat gtgcggcgat tcggtctccc ctgccgcatt tccgaccagt tccaccccct
    20221 ggaaggagta aatcacgatc gtcatacaga ccacaatttg ctcccaaccg tggggaaacc
    20281 acattccgtc tgtttttaac gtcgggtgcc agtcactatg gcccattagc gagtagatca
    20341 tgaccccgcc cgcgcagata aacagcacga tcgcgaagac cttaatggcc gaaagccagt
    20401 attcgcattc gccaaaactt tttgcggagg tgagattgat agccgtcagg atgagcagaa
    20461 tcgccaggca gaacatatat accggaaccg cggggaaaaa ctggtgagca ataaaccctg
    20521 cggcagtgag gtcggctgcc agggaaaaga cccagctaaa ccagtaaagc cagccaatgg
    20581 tatagctcca gcaaggtgac ggcataaaca tcagcgcgta atgttgaaat gaaccggagt
    20641 gaggaaaggc gcatgataat tcgccaagac acatcatcgt cgccagcata atggttccgg
    20701 caaacagata ggccagtaag gttcccgccg gcccgacgct gcttaacggt tcggcaatgc
    20761 cgataaataa gccggtgcca atcgtgccgc ccagcgacat catcagcagg tgccgcttct
    20821 tcaggttacg ccgcagaccg ccttcaggct ctgctggcgg agattgttgc agggtatcca
    20881 tcgttactcc ctgtctttcg tgaggtcaaa gatgccgccg cgacatagcc gcggcggtta
    20941 tgcgttaacg cgtaaacctc caggcgacgc ctttggtctg gcaggccatt aacaggcccg
    21001 tataatccag ctcaaagcga accacatcgc ctacttttag cgactgacga caatcttcaa
    21061 tatccaccag cgtatgatcg ctggtttgcc ctaagatagt gatagcgtcg tcgcatggca
    21121 cacagttatc cgacggcaca tcctgacgac caaacgccag caatgcgcgt cggcgtatgc
    21181 cacgatcgac aaaggtttta ctttgcaaaa aggcatcgac gcccagctcc ccgaccggga
    21241 cggtcggttt actgttcagt tcgatgattt ccgcttccag gatatacata tcggaacagg
    21301 ctttatcgac cggttttgcg gagtggtgaa attcattcag gtatttcatg tccacatatt
    21361 caatgccgaa ttcatgcagt ccgccgatgc gcagatgatt cagtccctgc ggccagatac
    21421 ctttatccag caggtgatag ctggtgcagt ttcccgcaga aagccgccgg acaggaatac
    21481 cgctgtcagc ttccagccgg gcggccagcg ccagaaaatc ctcgccattt tttaccgttg
    21541 gcaacacggt gccgtaacaa ttaaagttgg tgcccagtcc atataattcc agaccgggca
    21601 gaccagtaat cagagtcacg gtctcaagaa tgcgttgata ttcaccaaac cagataccct
    21661 cgcgtaaatc gcccatatcc accatcagta atacctgatg cgttttcccc tggcgttggg
    21721 cttcttgcga taatgcccgt aataccaccg gctcgctatt taaactaata tccgcgtagc
    21781 gcaccacatc ttcgatttca ctcagacacg ggctgcgtaa caggcaggtc gtacatcctg
    21841 tctcgcgtat ttttttcaaa ttataggttc gtgattcagc aataacggta attccgccgt
    21901 ttaacaccgc ctgcgcggtt tccacgcagc cgtcaaaaac tttattgaca gccatcacgt
    21961 caataccgct gcttgccagc agagcttttt ccgtgcgtgc gttttcttcc agcttgcgta
    22021 gatttatttc cagaactggc atatacattt tattttcctc ccgccatgct taaacgggca
    22081 ttacgtttct gcgcccgatg gtaaatgtac tccgcgacga caaccgccag cacggctccg
    22141 ccaataattt tcccggcgta ctggaaatat ccgcccatat caatttgaga aggcggaata
    22201 aataacagcg caacggcaaa ggcgatagaa agaaagccca gcgcgggtaa aatagccggt
    22261 aaaaccttgc ccggaatttt aaaacttctt ggcgtatctg gctgagtctt acgtaaacgc
    22321 cagaacgccg ggaacatcac cagataagga ataaaatagg tgatggtcgt tagcgccgtt
    22381 aacatccagt aagccgccgc aacgcttggc gaaataaaag tcgaaaaaca caggaccgtg
    22441 acaataatcg cctgtatagt caaggcaaag gcgggcgttt tccacaccgg atgtaatttg
    22501 ccgattcggt cccccagcag attatcttca cgcgaggctt cctggagcat ataaatcggc
    22561 cccaccagcc aggagttaat ctgcccgaga gcgccaaaaa acatacagat ggccataaca
    22621 ggaattaacc acggcatatg cagcgtgtcc gcagcagcat gcatagcctg catgacgcct
    22681 gccacgatgt cggttttccc ggcgggtaaa agcgtattta gcgcccaggt gccgaccata
    22741 tagatcccaa cgataacggc ggcagagacg gccatcgctc gcggaaaatc acgctgtgga
    22801 ttacgggtac gcccggcaat catcggggcg acctccagtc cggcaaacgc aaacatcatg
    22861 ctggataaga aaacgatcgt atcccagtgt ccgagatccg gaatccagtt tttcgctgta
    22921 gtgtagtccg tctgcatctg gtgtccggta catagccata ccaccgccag caaaatgagg
    22981 atggcggagg gaataaatac gccgcaccag gcgctgatgc tattaataat ttttgtccat
    23041 tccatcccgc ggatattcat cagcgttaat agccagaaaa ttaccgcgga accaataccg
    23101 ataaacgctt tattttccgc caggccgccg ccgatcatat agcccaacgc ggtaaagccg
    23161 aattgcagca ttaatgggaa aaacagtacg caggaaaaga gaaaacaaac cacgacaatc
    23221 catgcaatac gtttaccaaa tgcctcttta atccagacaa atatcccgcc atctttcggc
    23281 cagccggttg acagctcgcc gcataccatc gctaaaggaa aaaacaagca gaatgcggct
    23341 atcacccata gcaacatggc cgatgccccg taaggcgcca cgttagggat ttgccgcaaa
    23401 ctcagaatag cgatgacatt cataaagaca atgtctttga tgccaagtaa gccagaattc
    23461 gtgttactca tggccatctc ctgttatgca ttcaggcatc actgccctct tcttatcatc
    23521 tgacgacggg cttcagcatg aaactgaagc ccaaaacagt attaataaat gtcgtacttg
    23581 accatatctt cgtaactgtc ttcccgacga atcagacgcg tctcaccatt tttatcgatc
    23641 atcaccaccc ccgtgcgcgg acggttgtta taaacggttt gactttcaat ggtgtatgcc
    23701 ccggcatcaa gaaacgcgac aatatcgcca acatgagtct ccttcggcag taaaaactct
    23761 tcgcctttca ctcccatgtg gaaataatcc ccgccatcac acagcggccc ggctaatttt
    23821 atccaggcgt cgtgcgctgc cgtcatgcga gaggcgttat agacataaaa gaaccagtca
    23881 aaatgctggc tatcagagag tacgctgtaa ccagcatcga caaatttcca ttcaacgtgg
    23941 cattccacat tgccgttaag atcgtaattt gttttacgtt tttcgcagga gacttccgtc
    24001 agtaaaaccg ccgccgaccc ggtcacttta cgtcccggtt caatacatat ttccacatcg
    24061 gtacgccatt tatgcacttc gcgaatgacc gcatcggcaa aatcctgggc ggtaataccg
    24121 gcatacatat tatcttttaa cgggtcgcca ttctcgtcgt catatttata gggaaccgga
    24181 attccgccgc ccacgttgat caaatcaaat ttaataccga gcacctcttc caggcgacgg
    24241 gattcatcca ccagcacttt agtcgctttt gcgaaaggct ctgactccgg cacctgatcg
    24301 cccacatgca tatgcaagcc gcgtaaatgc acataaggca tcgccagaat gcggcggcag
    24361 gtttcttccg cctgttccag gtcgagaccc gacttcgcat ggaaagcggt aaccagttcc
    24421 gcatgcgtcg ccgagggaac attcggctct acgcggacgc aaacattggc gactttcttc
    24481 agcttgcgag agatggcatc aatatgttcc agctcataca ggctatcaac attaataaga
    24541 tacagatcgt tggcgatggc atattccaga tcggcaggct ttttcaccac gccgttgaag
    24601 acgatctgat cgccgcgaaa gcctatctcc aggcacttgc gaacctcata ttgtgagttt
    24661 gcctccgcgc aaattccggc gtcacgaatg gctttcaaca cccccatgac cgagcaggtt
    24721 tttgacgcaa agaaggtttt ggtattttta tgcgccgcaa atgcctgctg gatttcatga
    24781 atgttacgaa taatctccgg ctcagaaaac acatagaacg gcgtggggta ctggcgcgcc
    24841 agagcgtcca gatcgacccc ttcaaaacac aaatgaccgt ctttgtgctg gaaacggcga
    24901 tcgccgttga ttacctgctc acgtagctgg ttgtaattct gcataatcga gtcagtcata
    24961 acgccctctg cttaatgttt atggtaaaaa tccgcattct ttacagggat aaagcaaaag
    25021 gcatgccact attttttatc aaaataatca attatttata aaaataagct gtttctcatt
    25081 ttcgtcatta agtttgctat tcatcataac gacgaaaatt cgtcattttt ataatggcaa
    25141 catgaacaat agatatgagg aatgcatgta tggcatccac caatcaggaa ctggcctcgg
    25201 cgctcaggat gttttcccgc tttttcgatt tgattcatca gccgttggcc gtcattaatg
    25261 agcgtggtga atacgtttac tacaatcagg aaagcgcgga tctggacggc tacagcattg
    25321 aacgggcaat gggaaaacat atgctggatg tctatccggg catgaaagaa acccaaagta
    25381 cgatgctttc atcgttaaaa aaaggcgtgg aatacattgg ccattatcaa atttattaca
    25441 atgcgcgagg ccaggccgtt gactatcagc acaccaccgc gtcgctctat gcaagcgatg
    25501 gcggcatggt cggcgttatc gaaatcggca ggaatatgtc cggcgtcagg cggctccagg
    25561 agcaggtggt agaactgaac caactgctgt atgccgatca ccatgagaag caccatgcca
    25621 ttattaccga aaatccggaa atgctcagta atatcgccaa agccaaacgg ctggccgcca
    25681 gtaatattcc ggtgacgatt gtcggggaga cgggaacggg taaggagcta ttttcccgcc
    25741 tgatacatca atgcagcaag cgggcgaata agccatttat cgccctgaac tgcggcgctc
    25801 taccgcctac gcttatcgaa agtacgcttt tcggcaccgt gcgcggcgcc tataccggcg
    25861 cggaaaatag ccagggctat ctggaactgg caaacggggg aacgctcttt cttgatgagc
    25921 tgaacgccat gccgatagaa atgcaaagta agctgctgcg attcttgcag gataaaacct
    25981 tctggcggct cggcggacaa cagcaactcc actctgatgt caggatcgtt gccgccatga
    26041 acgaagcgcc cgtcaaatta attcaacaag aacgcctgcg ggcagatctt ttttatcggt
    26101 tgagcgtcgg aatgttgacg ttaccgccgt tgcgcgcccg cccggaagat atccccttac
    26161 tggcgaatta ttttattgat aaataccgta atgacgtgcc gcaggacatt cacggattaa
    26221 gcgagacggc gcgtgctgat ctgctcaatc acgcctggcc gggtaatgtc aggatgctgg
    26281 aaaacgcgat tgtacgcagc atgatcatgc aggaaaaaga cgggctgctg aaacacatca
    26341 tttttgaaca ggacgagtta aatttaggcg taccggaaac cgcgccggag aatccccttc
    26401 cctcgtcacc cgatccgcag tatgaagggt cgctggaggt acgggttgcc aactacgaaa
    26461 ggcatttaat agaaaccgcg ctggatacgc atcaggggaa cattgccgcc gcggcccgta
    26521 gccttaacgt atcccgcacc acgttacagt acaaagtaca aaaatacgct attcgcttcg
    26581 gcgtggtgcg taattgacat cggccagcgg catcgcgccg ctggcaaagc cattagcctt
    26641 cgttatgcat ttccaagttt tccatttcgt tctggaacag caccgctttg gcgtcgtcat
    26701 tacgtaatga atccaggaag tcgaggtatt gctggtctac gtctttggtg acatataccc
    26761 cgttaaatac cgaacattca aactgctgga tatccgggtt ttctgcgcgt acggcttcga
    26821 tcagatcgtt cagatcctgg aagataagcc cgtctgcgcc gatgatctgc cgaatctcat
    26881 ccacctcgcg accatgcgcg atcagctcat tggcggtcgg catatcaatg ccatagacgt
    26941 tggggaaacg aatttccggc gcggcggacg ccagataaac cttcttcgcg ccagcttccc
    27001 gggccatctc gatgatctgc tctgatgtgg tgccacgcac gatggaatca tccaccagca
    27061 ggacgttctt atcgcggaat tccgcgcgat tagcattgag cttacggcgc acggatttac
    27121 ggcgtagctg ttggcccggc atgataaagg tacgtcccac gtaacgattt ttgacaaatc
    27181 cctggcggta cggcttgccg agaatacggg caatttccag ggcgatatcg caggaggttt
    27241 ccgggatagg gatcacgacg tcgatgtcca gatcttccca ttcacgagcg attttttcgc
    27301 caagtttggt gcccatattc acacgagcgc tgtagacgga gattttgtcg ataaaggagt
    27361 ccgggcgagc aaaataaacg tactcgaaca gacaggggtt actgaccgga ttatccgcgc
    27421 actggcgcgt gaacagttgc cccttttcgg taatatagat agcttcgcct ggcgcaacat
    27481 cgcgcaggaa ttcaaagccc agcgtatcca gcgccacgct ttcagaagcg accatatact
    27541 ccgtacgacc atcgccaacg tcacgcttgc ccagcactaa cgggcgaatg ccgtgcggat
    27601 cgcgaaaagc caccatgccg tggccgataa tcatcgctac gcaggcatag gcgccgcgga
    27661 tttgacggtt agtcgcggca atcgcggcaa aaatattgtc ggcttccagc ggatagtgac
    27721 ggaagctgtc gagctcgctg gcgaaaatat tgagcaggat ttcggaatcg gaggtggtgt
    27781 tgatatgacg gcgcttttct tcaaacagct ttttacgtag ctcgtgcgca ttagtcaggt
    27841 tgccattatg ggccaacgtg atgccatacg gcgagttaac gtaaaaaggt tgcgcttccg
    27901 aagcgctgga gctgcctgcg gtagggtagc gcacatggcc gatccccatg ttgccctgca
    27961 aacgctgcat gtggcgagct tcaaaaatat cgttcaccag cccgtttgcc ttacgcaagc
    28021 ggaagcagtt attcgcatca atggtgatga taccggcagc atcctgacca cgatgctgga
    28081 gcactgttaa cgcgtcataa atcgactggt tgaccggcat aacaccggag ataccgacaa
    28141 taccgcacat acgtcatttt cctcgttaag ccacatctca gaacctgtta cgtcctgggc
    28201 aagaaactcg acgagctttg cagatagtca aagaaccatc tgatgatgaa gctgaactgc
    28261 gggatgagct gcgatttgct ccagtcttcg cttttcgaca agccggtaaa ggtatcaagg
    28321 aagaacagaa tggcggcgac aatcagcgcg cctcgcagtg cgccgaaaca gatccccaac
    28381 acccggtcag ttcccgacag gccggtcttt tctactagct gacctatcac aaaattcacg
    28441 atagcgccga cgataagcgt cgcgataaac agtaccgcga tagcaatccc attacgaacc
    28501 agttcgtctt caaagcccgt aaaccagaca gacaggtaag tgtagtagtg actggcgaca
    28561 aagaaagcac aaccccacgt caccagcgat aacgcttcac gaacaaagcc gcggatcagg
    28621 ctaaccagac aggaaaaagc aatcaccgcg ataatggcgt aatcaatcca gaccatagat
    28681 gtcccacgat tttacgccct gtcgtcctgt tcggggcgca ttctaacaga aaaagaaaac
    28741 gtttgcgtag ggatttcctt cccacgcgta aataaaaatg gcgctgaaaa aatattcaac
    28801 gccatcacac tttttatctc ttcgggcacg accagaagag ctgccatcgg cctgataagc
    28861 gcaggatacc cggtttattc cttctgccgg atggcggcgt aaacgcctta tccagcctac
    28921 agaacttcgg ctattaccag atgaacaccg taggccttaa cgctgcgcgc tcaggcaaaa
    28981 cgcgccttag ttcgggctat atcccatcac cacgccgctt aacccggaaa tctgcttgag
    29041 ctcgccaagc gatcctttca tcttatcttt cgacgcatcc ggcccgacga gaatacgggt
    29101 tattttaccc tgtaccggcg ttgaggggga agtataaacc cggaacccgg cggaacgaag
    29161 cttgccgact atctcgttga ctttatccgc gtttttcagc gcgcccaact gtacgacata
    29221 ggctttgccg gtcggcgcag gtttatcgtc ggtagccggt tgcggcgcgg gcgtcggcgt
    29281 ggaaacggcg acaaccggct gttgcggttt aggctgcggc ttcggctttt caaccggctt
    29341 cggtttaggc gtctccaccg gtatcggatc aagctcgaca ttgttagacg ccatgcgcga
    29401 cgggtccagc gacggcgctg ccgcatctcc cgcccgcacc tcttcagccg ccccttccgg
    29461 cggctgtgtc ggcagcgcct gcgttgcggc aggcatcata tccggctcat cacggtcgcc
    29521 aggcttcggt accagtggaa tcgcagcaaa ttcatcctga taatgctttt tctgtccgtc
    29581 cagcagaccg ggaagcacaa taacccccag cgcgactaac acaatcgtgc cgactaaacg
    29641 attctgaaac ttactcgcca ccgattctcc ccgcgtctat cacttccata acatgtgcga
    29701 cggtgtggaa cgatccgcac accagcacgg tatcttctgg ctgcgccgcg tcgatagcgg
    29761 cctgccatgc ctgcgcgacg ctatcataga cattcccttt ccccagatgt tccagaagtt
    29821 gttccgccgt cgcgccgcgc ggcccctcta acggagcaca ataccagtcg tcaaccacgc
    29881 ttttcaacca ggctaacgtg ccggcgatat ctttatcatg cagcatacca atcaccgcaa
    29941 gcacgcgccc gcgtttcggc aacattttca gacgacccgt caggtattcc gccgcgtggg
    30001 gattatgggc gacatcaaag ataacgcgcg gcgactcact cacgatttga aaacgtcccg
    30061 gcaaggtagc ctgcgcaata ccgtcgcgaa tcgcctgttc gtcaatgttc aacccgctgg
    30121 cgcgcagcgc ggccagagcg gtggcggcat tcggctgggg aacctgcggc aacggcagtc
    30181 cggcaagcgt gccgtcgcca tcggtaaacg cccagtgggt cgctgtcacc tcataacgcc
    30241 agtcaacgcc gcgacgcagc aacagcgcgc cggtctcctg cgcgacatcc gcgatggttg
    30301 ccggcatttc cggttcgccg acgatagcgg gtttttccgc acgaaaaatc ccggccttct
    30361 cgcggccaat actttcgcga tccggcccca gccagtcagt atggtcaagc gcgatgctgg
    30421 taattaccgc tacatcggca tccacaatgt tcgtggcgtc caggcgcccg cccaacccga
    30481 cctccagaat caccacgtca aggttagcct gtttaaacag ccacaatgcc gacaacgtac
    30541 catattcaaa ataggtcaat gaaatatcgc cgcgcgccgc ttctatttcc gcaaaggacg
    30601 cggtatgcgc ggattccgct aattctttcc cctgcacgcg cacgcgctcg gtgtaacgta
    30661 ccagatgagg tgaactatag acgcccacac ggtatcccgc cgcgattaac accgactcca
    30721 gcgttcgaca ggtcgtacct ttaccgttgg ttcccgcaac ggtaaaaacg aacggcgcag
    30781 gcttgaggat gtccagacgc gctgccacct ggcttacgcg ctcaaggcct aaatcgatac
    30841 tcttgctgtg caggttttcc agataagaaa gccacgaggc caggggcgac gcagcttgag
    30901 gtatagattt gtttttcatt gattccgctg cttctttacg gtgaaaagca aaagggcaga
    30961 gcctgcggcc ctgccctttt cagttatcag gcctcagact cctgatccgg cgccggaggc
    31021 accaccacgc cttcacgcgg ggcgtccggg ttcggcgcgg gcagattcat cagcttcgcc
    31081 agaatgctcg ccagcttcag gcgcatttcc ggacggcgga ctatcatatc aatagcgcct
    31141 ttttcgatca ggaactcact gcgctggaat cctggcggga gcttctcacg aacggtttgt
    31201 tcgataacgc gcgggccggc gaagccaatc agggcttttg gctcggcgat gttgagatcg
    31261 cccagcatcg caaaactggc ggaaacgccg cccattgtcg gatcggtcaa taccgagatg
    31321 tagggcagac cacgttcctg cattttagcc agcgccgccg aggttttcgc catctgcatc
    31381 agcgacatca gcgcttcttg catacgcgcg ccgccggaag cagagaaaca cactaacgga
    31441 cagttgtctt ccagcgcctg ttcaacggcg cgaacgaagc gtgcgccaac gacagacccc
    31501 attgagccac ccatgaacgc gaattcaaac gcggcggcga caaccggcat accgtgaagc
    31561 gtccctttca tgaccaccag cgcgtctttc tcgccggttt ctttctgcgc ggacgccagt
    31621 ctgtctttat attttttgga gtcgcgaaac ttgagcacgt ctttcggctc cagctcgcta
    31681 cccaactcca caagggaacc ttcatctaac aggctatgca ggcgattgcg cgccgacatg
    31741 cgcatatgat ggtcacactt aggacagacc tcaagattac gttccagctc agcgcggtat
    31801 aaaacctgac cgcagctatc acacttggtc cacacccctt caggaatgct tgccttgcgg
    31861 gtgggagtaa tgttgctttt aattcgttca atccagctca ttggtgacct ttctgcctga
    31921 accttagtca gctttattat aaggggcgca taatgccatt tttgccccca acagaccatg
    31981 aatgttgcac attaaaacat aacagcccga aactttggat aaaaaagtgg tcgaaccgct
    32041 gagttacttt ctattttgcg gcacgcgacg cagcgcgctt atgccggaca atctcaatga
    32101 cgccaggtaa tatcgaaacc acgataatcc ccacaatcag cagcttaagg ttatcctgaa
    32161 tcaacggtat cgtaccgaag aaataaccgg cgtaggtaaa gagcagcacc cacagcagcg
    32221 cgccgatgac gttataggcg gcaaaatgcc gataggacat gtgccccatc cctgccacaa
    32281 acggcgcaaa ggttctgacg atcggcacga agcgagcgag aatgatagtt ttaccgccgt
    32341 gtttttcata aaactggtgg gttttatcca gataactgcg gcggaaaatt ttcgaattcg
    32401 gattactgaa cagtttttcg ccgaacagtc gaccaatcgt gtaatttacc gcatcgccga
    32461 caattgcggc gatcagcatt aacgccacca tgacatgcac attgagatcg ttggtttcca
    32521 gcgaagccag cgccccggcg acaaacagca gcgagtcgcc cggcaggaac ggcgtgacga
    32581 ccaggccggt ttcacaaaac agaatcaaaa acaaaatagc gtacacccag acgccgtact
    32641 ccgcgaccag ctccgccaga tgcacatcga tgtgcagaat aaaatcaata ataaagtaga
    32701 tcaggtccat atttgtcttt gcctttctac ccgacacgtt tcgggtgtgc gattcggatt
    32761 agtccgccag aaatagcggg cccattggcg gttttggaag gtcaaaccgg tcagggtaat
    32821 ccaccgcaac caaatatagc ccttccgcct tcgccgttgc cgccgccagc gttctgtccc
    32881 tggccgctaa cagctctgcg atccagctct ccggctggtt gtgagcgcct acttccagca
    32941 ggctgccgac aatattcctg accatatgat gaacaaaggc attcgctttg atatcgacca
    33001 ccacataagg gccgtggcgg gtaacgttga tgtgcatcac attacgccac ggcgtgcgcg
    33061 actggcactg caccgcgcga aacgaggtaa aatcattttc gccaagcaga cactgcgccg
    33121 cgcgatgcat ccgctctgca tccagcggct catagtaatg cgtcacgcct tttgctaata
    33181 ccgcaggacg cagtcgatga ttgtagatga tatagcgata acggcgagcc gtagcgctaa
    33241 atcgcgcgtg aaaatcatcc ggtacagttt tcacccagcg cacggcaatg tcaccaggca
    33301 aattcgcatt tacccccagc gtccatgccg catctttgcg caatgcggtc gtttcgaaat
    33361 ggacaacctg cccggtgccg tgaacgccgg catcggtgcg cccggcgcag aacacgttaa
    33421 taggttcatt tgccacctgc gagagcgctt tttccagctt ttcctgcacg ctgcgcactt
    33481 cattctgacg ctgccagcca taatacttgc tgccgtcgta ctcaataccc agcgcaattt
    33541 tatagaccgg cgatgattgc tgtccggaca tcagtacaga tactcctgca ccagcttctc
    33601 cgcaatttta acggccatca gcgcgccgcc gaaacgcacg ttgtccgcca ctgaccagaa
    33661 ctgaatttgt tccggcatac cgtaatcatt atgcacacag ccaatagaga gctgtggatt
    33721 gccggaagcg tcgcccacct gcgtcgggta atccgtctct tctgacagta cgatatcttc
    33781 accgcgggaa aacgcctcgc gcgcctcttc cgccgccagc ggacggagcg cttcaaagct
    33841 caccatctgc gcatggccat agaacaccgg cgactgcacg acactggcgg agatcatcac
    33901 gccatcatcc tgcaaaattt tacgcacttc atcgacgata cgacgttcct ggcgcacgct
    33961 gccttcccga tccggcagca gcggcagcat attgaacgcc aactggcggc caaagaaatc
    34021 atcttcatca atcggtatgc cgttaagcag cttcgcactt tgtccggcca gcgcatcgac
    34081 cgcttttttc ccctgcgcgg acgctgataa catactggtg acggcgatgc gcgacagtcc
    34141 cccctgatcg attaacggct tgagcgccgc cagcagttga ctggtcagac tatcggcgac
    34201 cgcaatcacg ttacggttac ggtaatccgc cagtacatac gggttaactt ccggcacgac
    34261 cagcggcaca tcaggctcca gcgcgaacag accgctggaa tctatcacca ggcaacctgc
    34321 attggtcgcg tcgtctatcc aggcagccga tgcctctgcg ccggcaacga aaaacgccaa
    34381 ctgcgcctgc gtccagtcaa agtccgccgc atcctggaca atgaccgact tgccaccaaa
    34441 acggaggtgc tcgcccgcgc tttcatgacg cgccaacgca taaatttcac cgaccgggaa
    34501 ctggcgttca gccagtgttt caagcagggc ttcgcctacg gcgcccgttg cgcccagaat
    34561 ggcaatgttc cagccttcag acatggtgat ttactccaga aatacataag cgtccctgtc
    34621 gcattattcg acagggagca ttaagaagac attaatgtgc cgggtgatga acagcgttaa
    34681 aacctagctt acacagcaag gcggctgccg tttcgtcgtc acacatcacg tataaagacg
    34741 accattcacg gcgctcaaga taatttttac gcaatttatc aaattcaccc ggaattccag
    34801 cgactttacg cagtggcgca tcgtcgcggc gcacatcata caccaaatgc gccagtcttt
    34861 tcagcgtcgg ttgatccagc gggccgtgaa gcgtaatacg accaaactca ggcgcaggca
    34921 gtaatgtctc cagcgcgaca cgctgctcgc gaccgataaa cgcgctatac gcctcaaaga
    34981 cctgggtggt gccgcgcgct ttgccttcca gcgtatagcc ggcaatatgc gacgtgccga
    35041 tatccacggc ttccagtagc gcgacgttaa gatccggttc gccctcccac acatcaagca
    35101 ccacgctcag cggctgcccg gcattgagtc gcgccagcaa tgcggcgtta tccaccaccg
    35161 ggccgcggca ggcgttaatg agaatggcgc cgggtttcag tcgacggatc agcgtctcat
    35221 cggccagatg cagcgttttg tacggtccgt ctttatagag cggcgtatgg aaagtcagga
    35281 catccgcttc ctgcaccagc tcatccagcg tacgaaaatc accctcgtcc ccgcgtgcgg
    35341 cgcgtggcgg atcgcacagc aacgtgcgga tacccaacgc ttcaagcctg gtctgtagcc
    35401 ggcttccgac gttacccacg ccgacaatcc ctatagtgcg atcgcgtaac gaaaagccgt
    35461 cacgttcggc cagcatcaac agcgcggaaa acacatactc caccacggcg atagcattac
    35521 agccgggcgc ggctgaaaaa ccgatgcccg cctgcttcag ccatgcctca tccacatgat
    35581 cggtgcctgc cgtagcagta ccaacgaagt taatcggcgt gccgctcagc agcgattcat
    35641 tcactttcgt gaccgaacgc accattaacg catcggcatg gttcaattct tcaacgggga
    35701 tcgggcgacc cggcactgcc tttacctcac ccaggcggct aaataattcg cgggcgtaag
    35761 gcatattttc atcaacgaga attttcacga ctgtcgtacc tgtttgagaa cgagagttaa
    35821 ccggacaagt gtgccataat ctggccgcca agcatatatt gctcagattt atggttaaag
    35881 gataattaat tatgcatccc atctccggcg cccctgcaca gcctccaggc gaagggcgta
    35941 atcctctttc cgctgcgagc gagcagccgc tttccatgca acagcgtacg gtactggaaa
    36001 ggctgatcac gcgcctgatt tcactgaccc agcagcaaag cgcggaagta tgggccggaa
    36061 tgaaacacga tctggggata aaaaatgacg cgccgctact gtcgcgccac ttccccgccg
    36121 ctgaacagaa tcttacccag cgtctgggcg tagcgcagca aaatcacgcc aatcgtcagg
    36181 tgctttcaca gctaacagag ctgcttggcg tcgggaataa tcgtcaggcc gtcagcgatt
    36241 ttatccgtca acaatacggt caaaccgcgc ttagccagct tacgcccgat caactcaaaa
    36301 acgtgctgac gctcctgcaa caggggcagc tttccattcc gcagccgcaa caacgtccgg
    36361 caacggatcg gccattattg cctgctgaac ataatacgtt gaatcagttg gtgacgaagc
    36421 tggcggccgc gaccggcgag tcaaacaaac ttatctggca atcaatgctg gaactctccg
    36481 gcgtgaaaag cggcgagctc attccggcaa aacagtttac ccatctggcg acatggctac
    36541 aggcgcggca gacgctgtca ctacaacacg cgcctacgct acatacgctg caagctgcgt
    36601 taaaacaacc gctggaaccg gacgaactca cagcgatcaa agagtatgcc caacacactt
    36661 atcaaattca gccgcaaacg gtgctgacca ccgcgcaggt gcaggattta cttaaccata
    36721 ttttcctgcg tcgcgtagag cgggaggcgg atgagctcga accgctctct attcaaccca
    36781 tctaccgccc gtttgcgccg atgattgaaa ccgtgaaaaa tctgtctgcg cgaccaggcc
    36841 tgttgtttat cgcgctaata attgtactgg cgcttttctg gctggtttct taaccgcgcc
    36901 ggaacgataa tatcgtcacc aggatgccaa ccaccgcgga gatcgctccc gcgaggaata
    36961 cggaaggata gccgtatgac gtggccagca tgcccgccag cgggccggta acgccgtagg
    37021 agatatcctg aaacgcggcg tagccgccga gcgccgtacc gcgtacctgt gcaggtacgc
    37081 gtttcacaac ctccacgccc agcgccgaga aaatcagtga acaccctgcc ccggtgagcg
    37141 ccgcgcctac cagcgctatc caggccgtcg gcgccagcca caagagcagc aaccctgccg
    37201 tctcaaccag caatgagaca acggcgacct tcacgccgcc aaagcgatcc ggcatccaac
    37261 cgaacaatat gcgcatcagt acaaacgcac cgccaaacgc ggtcagggtg aatcccgcca
    37321 tcgtccagcc attgctgaca aaataaagtg aaataaacgt accgatgacg gcaaagccca
    37381 cgccctgcaa tgccaggccc aggcccggtt tccagataag cccgaccacg ctccacagtg
    37441 aaggtcgctc ccccgtatac gcaggcactt tacgcacggt gccgttgaat gcccaggcca
    37501 gcagcggtaa aaccatcgtc gtccccgcca gcgccgcgaa gccaaagtgg ctatggatca
    37561 gcaagcccaa cggcgcaccg gccgccagcg cgccgtaaat cgccatcccg ttccacgaca
    37621 tcaccttacc ggaacgcgtt gggccaacca gccccagtcc ccaggtcagg gttccggtca
    37681 gcagctggct ttcgccaaat ccgaggatca aacgcccaac aataagcagc gcgaatttta
    37741 ccggcgcgga aaccggcaac agcgcggcca ggagccaggc ggcgcccgcc agcccgcagg
    37801 caagcatccc ctgtaacgcc gatcgtttag cgccatattg atccgccagc cgtccggcat
    37861 agccgcgcgt cagtaccgtc gcaaaaaact gaatgcccac ggcgatccca accatcgtat
    37921 tgctatagcc cagttcgtga tggacaaaaa gcggaatgac cggtaacggc aggccgaccg
    37981 tcatataggt caggaaaacc gcaaaggcga tgcggaacag cgaaaaatcc gcagacgggg
    38041 tcgttgtttt ttggctaact gctgtcatgc attactccag aatgcagagt aaggcgggga
    38101 aaggccacgc ccccctctac ctgaacgtca ggattaaggt gcgttggata acgttaaacg
    38161 cttacgcatt atcggaagga taatgtagaa agtgaagtct gcctgtgaga cgcgaaactt
    38221 gtcaaccttg aaattgcagc cagggtatca acgcggcggc gtgtcatcaa acagaaagag
    38281 aaagaccgct ttcatccctc tcaccttaaa ccgtccagtc acctgcttgc gctgttctgg
    38341 cgtcagtaac ctgaacatca tctcccagat atcttcaggc tccgcttcct gtaaggaaat
    38401 gggttctggc gtcggttcct ctccgctgtc gtccagataa cgatgaacat agagagggaa
    38461 aacagatata tgaaactcct cggcctttga tttaacacgc ttacgcctga cccccgcttt
    38521 cccttcactg tacttatata aacgttcgcg aaccgcaggc tcgcttcccg gaaaccccgg
    38581 taagccaaga cattccttaa ccgtgaacca ttcctttgcc atcggtttct ttcctttccc
    38641 ctgatgaaat aaaaatattt cttctttttc gcgaaatttt gctttctttc tggcactatt
    38701 cttagcgtga aaaagaaagt aacttccttt tccatgcgct aattttatct taaaaatatc
    38761 ggcgccgata acacatcttc ttaggattac agaatggaac caaaaagcca agactggcat
    38821 cgtgcagata ttaaaagtgc actggaaaaa agaggtatta cgctcagaga tctttctcgt
    38881 caggccggtt tatcacctga ttcactgcgc aatgtcttta cccgttcctg gccgagagcc
    38941 gaacggatta ttgcggacgc gctgggcatc acgccgcagg agatctggcc gtcgcgctat
    39001 ggcgatatgc aaataa
//
LOCUS       DAJVSD010000011        36181 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.011, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000011 DAJVSD010000000
VERSION     DAJVSD010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 36181)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36181)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36181
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.011"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..559
                     /locus_tag="OQP62_000454"
     CDS             <1..559
                     /locus_tag="OQP62_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1720093.1"
                     /translation="VLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQ
                     QGNAPKALLNVDKRGVPVSSILVSAVVTALCVLLNYLAPESAFGLLMALVVSALVINW
                     AMISLAHMMFRRAKQQQGVKTRFPALFYPFGNVLCLLFMAAVLIIMLMTPGMAISVWL
                     IPVWLLILGVGYLCKEKTAKTVKAH"
     gene            723..2129
                     /locus_tag="OQP62_000455"
     CDS             723..2129
                     /locus_tag="OQP62_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1720094.1"
                     /translation="MDKGRLSVREKIGYGMGDAGYNIIFGAIMLFVNYFYTDIFGLAP
                     ALVGVLLLSVRVIDAVTDPVMGALADRTQSKYGRFRPWLLWIAFPYALFSVLMFTTPD
                     WGYNSKVIYAFVTYFLLSVTYTAINIPYCSLGGVITNDPKERVACQAYRFVLVGIATL
                     LLSLTLLPMVDWFGDGDKAKGYQLAMTVLAIIGMGMFLFCFASVRERVRPAVPTHDDM
                     KNDFKDVWKNDQWVRILLLTLCNVCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVV
                     GMMIGSMLAKVLTDRWCKLKVFFWTNIALAIFSCAFYFFDPKATVMIVALYFLLNILH
                     QIPSPLHWSLMADVDDYGEWKTGKRITGISFSGNLFFLKLGLAIAGAMVGFLLSWYGY
                     DASAKAQSASAMNGIMLLFTVILGVGYLITAGVVRLLKVDRELMKKIQDDLEKRRTNY
                     RELSELQELKAAESVRKA"
     gene            2129..3079
                     /locus_tag="OQP62_000456"
     CDS             2129..3079
                     /locus_tag="OQP62_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HCS1720095.1"
                     /translation="MANWPNPFIEQRADPFILRDGSDYYFIASVPEYDRLEIRRADSL
                     EGLRAADPVVVWRKPESGPMSQLIWAPEMHRINGKWYIYFAATHTQALDKLGMFQHRM
                     FALECADADPLTGKWTEKGQIKTPFDTFSLDATTFYHQGKQWYLWAQKAPDIAGNSNI
                     YLAELENPWTLKGEPVRLSKPEYDWECRGFWVNEGPAVVVHGDKLFISYSASATDENY
                     CMGLLWINVNDDPRDPANWHKSPRPVFTTSYENRQYGPGHNSFTQTSEGEDVLVYHAR
                     NYTEIEGDPLYDPNRHTRLKRVRWDENGMPDFGVPPADTI"
     gene            complement(3171..4025)
                     /gene="ampE"
                     /locus_tag="OQP62_000457"
     CDS             complement(3171..4025)
                     /gene="ampE"
                     /locus_tag="OQP62_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase regulator AmpE"
                     /protein_id="HCS1720096.1"
                     /translation="MTLFTTLLVLIVERLFKLGEHWQLDHRLEALFRRITHFSMLRTM
                     GMTAIAMVVTFLLLQALKGLLFNVPTLVVWILLGVLCIGAGKVRVHYHAWLKAASRND
                     PHPCEAMASELTLIHGVPPDCNEREFLRELQNALLWINFRFYLAPLFWFIVGGPWGPV
                     TLVGYAFLRAWQTWLARYQTPHQRLQSGIDAILHVLDWIPVRLAGVVYALLGHGEKAL
                     PAWFASLADLHTSQYQVLTRLAQFSLVREPHTDKVETPKAAVSMAKKASFVVVVIIAL
                     LTIYGALV"
     gene            complement(4022..4585)
                     /gene="ampD"
                     /locus_tag="OQP62_000458"
     CDS             complement(4022..4585)
                     /gene="ampD"
                     /locus_tag="OQP62_000458"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HCS1720097.1"
                     /translation="MLPDKGWLVEARRVPSPHYDCRPDDEKPSLLVVHNISLPPGEFG
                     GPWIDALFTGTIDPDAHPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSNY
                     QGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTRTLIACYPAIADNMTGHCNIAPD
                     RKTDPGPAFDWPRFRALVALSSHKEMT"
     gene            4673..5566
                     /gene="nadC"
                     /locus_tag="OQP62_000459"
     CDS             4673..5566
                     /gene="nadC"
                     /locus_tag="OQP62_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HCS1720098.1"
                     /translation="MPPRRYNPDDRRDALLERINLDIPAAVAQALREDLGGEVDAGND
                     ITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQLAGDDVRLTWHVDDGDAIHANQ
                     TVFELNGPARVLLTGERTALNFVQTLSGVASEVRRYVGLLAGTQTQLLDTRKTLPGLR
                     TALKYAVLCGGGANHRLGLTDAFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVEN
                     LDELDDALKAGADIIMLDNFNTDQMREAVKHVNGQARLEVSGNVTAETLREFAETGVD
                     FISVGALTKHVRALDLSMRFC"
     gene            5788..6225
                     /gene="ppdD"
                     /locus_tag="OQP62_000460"
     CDS             5788..6225
                     /gene="ppdD"
                     /locus_tag="OQP62_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent pilin"
                     /protein_id="HCS1720099.1"
                     /translation="MEKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQ
                     TFVPYRTAVELCALEHGGTSTCDAGVNGIPSPVITRYVSGMSVEKGVITLTGQESLSG
                     LSVIMTPAWDNANGITGWTRNCNIQSDSALQQACEDVFRFDAN"
     gene            6235..7620
                     /gene="gspE"
                     /locus_tag="OQP62_000461"
     CDS             6235..7620
                     /gene="gspE"
                     /locus_tag="OQP62_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspE"
                     /protein_id="HCS1720100.1"
                     /translation="MKDAQLNTLCQRHQAVLINSASNSITVAVVDAPSHALLDALHFA
                     TQKQIDIVCWTRQQMENHRHKPDQAPSTNAAKGGETAAQLLNQTLRSAMAKRASDIHL
                     EPGASRYRIRLRIDGVLHILQDIAKETGLALTARLKVLGNLDIAEHRLPQDGQFTVDL
                     TGDSISFRIATLPCKEGEKVVLRLLHQVEQTLDLDTLGMYGAQLTAFRQALQQPQGLV
                     LVTGPTGSGKTVTLYSALQTRNTPGINLCSVEDPIEIPLDGINQTQIHPRAGLTFQNV
                     LRALLRQDPDIIMVGEIRDGDTAEIAIKAAQTGHLVLSTLHTNSTSETLIRLQQIGVT
                     RWMISSALTLVVAQRLVRKLCPHCKQRLSDPVVLSPNLWPSALPRWQANGCQHCYHGF
                     YGRTALFEVLTVTPALRQLIASGASAQALEAHLQQTGTGTLFENGCRAVEQGMTSFEE
                     ILRVLGMPHER"
     gene            7610..8812
                     /gene="hofC"
                     /locus_tag="OQP62_000462"
     CDS             7610..8812
                     /gene="hofC"
                     /locus_tag="OQP62_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein transport protein HofC"
                     /protein_id="HCS1720101.1"
                     /translation="MSVKQLWRWQGVNDKGQLEQDVVWVDNRLALIITLQHQRIMPLR
                     IKRISVNAALWKEEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAH
                     ELEQGVPFSSALVSWPQVFPPLYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVK
                     KALRYPAIILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGPAWGW
                     LILFLTMLVAIAHRRLKQKPSWQAQRQRLLLRLPVMGRLIRGQKLAQIFTVLALTQSA
                     GIPFLQGLESAIDSLGCPYWSQRLTQVHQEIAAGNPVWLALKNTQEFSPLCLQLVRTG
                     EASGSLDIMLHNLARHHSESTLALADNLASLLEPALLIITGLIIGTLVVAMYLPIFHL
                     GDAMSGMG"
     gene            complement(8843..9886)
                     /locus_tag="OQP62_000463"
     CDS             complement(8843..9886)
                     /locus_tag="OQP62_000463"
                     /EC_number="1.7.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008461816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP reductase"
                     /protein_id="HCS1720102.1"
                     /translation="MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQTW
                     SGVPIIAANMDTVGTFEMAQALAGFDILTAVHKHYSVEEWAAFINTASADVLKHVMVS
                     TGTSDADFEKTVQILALNPALNFVCIDVANGYSEHFVQFVAKAREAWPSKTICAGNVV
                     TGEMCEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVS
                     DGGCTMPGDVAKAFGGGADFVMLGGMLAGHEESGGSVVEENGEKFMLFYGMSSESAMN
                     RHVGGVAKYRAAEGKTVKLPLRGPVGNTARDILGGLRSACTYVGASRLKELTKRTTFI
                     RVQEQENRIFNSL"
     gene            10112..10732
                     /gene="coaE"
                     /locus_tag="OQP62_000464"
     CDS             10112..10732
                     /gene="coaE"
                     /locus_tag="OQP62_000464"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HCS1720103.1"
                     /translation="MRYTVALTGGIGSGKSTVADAFADLGITVIDADIIARQMVEPGQ
                     PALNAIAEHFGSELIAADGTLRRRALRERIFSHPEEKAWLNALLHPLIQQETQRQFQQ
                     ATSPYVLWVVPLLVENRLYQKANRVLVVDVTPETQLIRTMQRDDVTREHVEHILAAQA
                     TREARLAVADDVIDNNGAPDAIASDVARLHASYLKLASQFVSQEKP"
     gene            10732..11475
                     /gene="zapD"
                     /locus_tag="OQP62_000465"
     CDS             10732..11475
                     /gene="zapD"
                     /locus_tag="OQP62_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapD"
                     /protein_id="HCS1720104.1"
                     /translation="MHTQVLFEHPLNEKMRTWLRIEFLIQQLSINLPIADHAGALHFF
                     RNISDLLDVFERGEVRTELLKELERQQRKLQAWVEVPGVDQDRIEALRQQLKSAGSVL
                     ISAPRIGQQLREDRLIALVRQRLSIPGGCCSFDLPTLHIWLHLQQAQRDAQIESWLAS
                     LNPLTQALTLVLDLIRNSAPFRKQTSLNGFYQDNGDDADLLRLMLTLDSQLYPQISGH
                     KSRFAIRFMPLDSENGLVPERLDFELACC"
     gene            11485..11676
                     /gene="yacG"
                     /locus_tag="OQP62_000466"
     CDS             11485..11676
                     /gene="yacG"
                     /locus_tag="OQP62_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HCS1720105.1"
                     /translation="MSDVTVVNCPTCGKPVVWGEISPFRPFCSKRCQLIDLGEWAAEE
                     KRIASSGDQSDSDDWSEER"
     gene            complement(11673..12614)
                     /locus_tag="OQP62_000467"
     CDS             complement(11673..12614)
                     /locus_tag="OQP62_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001697068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1720106.1"
                     /translation="MKAGLIMRHDVMSVLHAFCMIAENHSFTRAAAQLHISTSALSQN
                     MRQLEDELGVKLLNRTTRRVGLTEAGHAFLASIRPALNHIDEAMEHACQSRDIPGGTL
                     RLTVPRTAATLLLQPNLAGFMRDYPDIRLDIDVNDGFVDLINERFDAGIRFGDAVQLD
                     MNVVPLGDVLRPAIVASPAYLARFGTPLHPQELINHRCLCHRFTRESGLYRWEFVHGA
                     QRLEITPEAALMVNDKALRLSAARDGAELTYVFEQDVHEDLQDGRLCSVLEEWLPAAD
                     RFYLYYPGRAHMAPKLRVFIDYFCHKAILPSQQSYHR"
     gene            12700..13689
                     /locus_tag="OQP62_000468"
     CDS             12700..13689
                     /locus_tag="OQP62_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001200034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HCS1720107.1"
                     /translation="MQYRTLGANGPRVSAIGLGCMGMSAFYGAHDDSTSIKTLHYALD
                     QGVTLLDTADMYGPYTNERLVGRAIADRRDRVFLATKFGIVLDPANPMARGVNGRPEY
                     VRRSCEQSLQRLGVDHIDLYYQHRVDPSVPIEETVGAMADLVREGKVRYLGLSEASTQ
                     TLERAHNVHPITALQSEYSLWSREAEISALSTCERLGIGFVAYSPLGRGFLTGTIKTP
                     EDFAANDFRRTNPRFMGENFSRNLRLAEAIKQMAREKECTPAQLALAWLLARNRHLVP
                     IPGTRHCARVDENLGALSLTLSPQELAAIEAVFPHDAAAGPRYWPEIMSTLNR"
     gene            complement(13723..14118)
                     /gene="mutT"
                     /locus_tag="OQP62_000469"
     CDS             complement(13723..14118)
                     /gene="mutT"
                     /locus_tag="OQP62_000469"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000736055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HCS1720108.1"
                     /translation="MKKLQIAVGIIRNPNDEIFITRRAADAHMANKLEFPGGKIEAGE
                     TPEQALIRELQEEVGITPTQVTLFDTLEYQFPDRHITLWFWLVERWEGEPWGKEGQPG
                     RWIAQNALNTDDFPPANEPIIRKLRQFAP"
     gene            complement(14274..16979)
                     /gene="secA"
                     /locus_tag="OQP62_000470"
     CDS             complement(14274..16979)
                     /gene="secA"
                     /locus_tag="OQP62_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HCS1720109.1"
                     /translation="MLIKLLTKVFGSRNDRTLRRMRKAVSLINAMEPEMEKLSDDELK
                     AKTNEFRARIGKGESVESLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNDRCIAEM
                     RTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGMSVGINLPG
                     MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDE
                     ARTPLIISGPAEDSSEMYKKVNKIIPHLIRQEKEDSDTFQGEGHFSVDEKARQVNLTE
                     RGLVLIEELLVQEGIMDEGESLYSPGNIMLMHHVTAALRAHALFTRDVDYIVKDGEVI
                     IVDEHTGRTMQGRRWSDGLHQAVEAKEGVEIQNENQTLASITFQNYFRLYEKLAGMTG
                     TADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYITEAEKIQAIIEDIKERTANGQ
                     PVLVGTISIEKSEVVSRELTKAGIKHNVLNAKFHANEAGIVAQAGYPAAVTIATNMAG
                     RGTDIMLGGSWQAEVAALEAPTEEQIAQIKADWQVRHDAVLAAGGLHIIGTERHESRR
                     IDNQLRGRSGRQGDPGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVT
                     KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYTQRNELLDVSDVSDTINSIRED
                     VFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLEMPIAEWLDKEPELHEETLRERIL
                     AQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKD
                     PKQEYKRESFAMFAAMLESLKYEVISTLSKVQVRMPEEVEAMEMQRREEAERLAQMQQ
                     LSHQDDDAAVAADLAAQTGERKIGRNDPCPCGSGKKYKQCHGRLS"
     gene            complement(17041..17538)
                     /gene="secM"
                     /locus_tag="OQP62_000471"
     CDS             complement(17041..17538)
                     /gene="secM"
                     /locus_tag="OQP62_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308128.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secA regulator SecM"
                     /protein_id="HCS1720110.1"
                     /translation="MSGILTRWRQLGRRYFWPHLLLGMVAASFGLPALSNAAETNTPA
                     RTTASTASKVNFSHLALLEASNRRPNFTVDYWHQHAIRTVIRHLSFAMAPQTLPVADA
                     PSPLQAHHIALLNTLSAMLTQEGTPPAIVRRLSLAYFAPQTAFSIPAWISQAQGIRAG
                     PQRLS"
     gene            complement(17820..18737)
                     /gene="lpxC"
                     /locus_tag="OQP62_000472"
     CDS             complement(17820..18737)
                     /gene="lpxC"
                     /locus_tag="OQP62_000472"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HCS1720111.1"
                     /translation="MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDL
                     NPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIP
                     IMDGSAAPFVYLLLDAGIDALNCAKKFVRIKETVRVEDGDKWAEFRPYNGFTLDFTID
                     FNHPAIDSSSQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVV
                     DDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVL
                     AKQEAWEFVTFQDDAELPLAFKAPSTVLA"
     gene            complement(18838..19989)
                     /gene="ftsZ"
                     /locus_tag="OQP62_000473"
     CDS             complement(18838..19989)
                     /gene="ftsZ"
                     /locus_tag="OQP62_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HCS1720112.1"
                     /translation="MFEPMELTNDAVITVIGVGGGGGNAVEHMVRERIEGVEFFAVNT
                     DAQALRKTAVGQTIQIGSGITKGLGAGANPEVGRNAADEDREALRAALEGADMVFIAA
                     GMGGGTGTGAAPVVAEVAKDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSL
                     ITIPNDKLLKVLGRGISLLDAFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMS
                     EMGYAMMGSGVASGEDRAEEAAEMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFE
                     TVGNTIRAFASDNATVVIGTSLDPDMNDELRVTVVATGIGMDKRPEITLVTNKQVQQP
                     VLDRYQQHGMAPLTQEQKTVAKVVNDNAPQAAKEPDYLDIPAFLRKQAD"
     gene            complement(20050..21312)
                     /gene="ftsA"
                     /locus_tag="OQP62_000474"
     CDS             complement(20050..21312)
                     /gene="ftsA"
                     /locus_tag="OQP62_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HCS1720113.1"
                     /translation="MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR
                     GMDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEE
                     EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHL
                     ITCHNDMAKNIVKAVERCGLKVDQLIFAGLAASYSVLTEDERELGVCVVDIGGGTMDI
                     AVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVE
                     VPSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVL
                     TGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKESHLN
                     GEAEVEKRVTASVGSWIKRLNSWLRKEF"
     gene            complement(21309..22139)
                     /gene="ftsQ"
                     /locus_tag="OQP62_000475"
     CDS             complement(21309..22139)
                     /gene="ftsQ"
                     /locus_tag="OQP62_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ"
                     /protein_id="HCS1720114.1"
                     /translation="MSQAALNTRNSDEETPSSRRNNGTRLAGILFLLTVLCTVFVSGW
                     VVLGWMEDAQRLPLSKLVLTGERHYTRNDDIRQAILALGAPGTFMTQDVNIIQSQIER
                     LPWIKQASVRKQWPDELKIHLVEYVPIARWNDQHMVDAEGNTFSVPSDRIGKQVLPML
                     YGPEGSASEVLQGYREMGQVLAKDKFTLKEAAMTARRSWQLTLNNGIKLNLGRGDTMK
                     RLARFVELYPVLQQQAQTDGKRISYVDLRYDSGAAVGWAPLPPEESNQQQNQAQAEQQ
                     "
     gene            complement(22141..23061)
                     /locus_tag="OQP62_000476"
     CDS             complement(22141..23061)
                     /locus_tag="OQP62_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HCS1720115.1"
                     /translation="MADKIAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQE
                     VDVAQLKAMGFQKVFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL
                     LWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEE
                     NALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEEILPSIRIQPAGTFYDYEAKYLS
                     DETQYFCPAGLEASQEAALQSLVLQAWKALGCTGWGRIDVMLDSDGQFYLLEANTSPG
                     MTSHSLVPMAARQAGMSFSQLVVRILELAD"
     gene            complement(23054..24529)
                     /gene="murC"
                     /locus_tag="OQP62_000477"
     CDS             complement(23054..24529)
                     /gene="murC"
                     /locus_tag="OQP62_000477"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HCS1720116.1"
                     /translation="MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGY
                     QISGSDLAPNPVTQQLTSLGATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEAR
                     IPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAG
                     VHARLGHSRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFL
                     HNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLR
                     QGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEF
                     PLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYD
                     DFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCRTIRNRGKIDPILVSDPAQVATML
                     APVLTGNDLILVQGAGNVGKIARYLSEIKLKPQIQEEEQHG"
     gene            complement(24648..25715)
                     /gene="murG"
                     /locus_tag="OQP62_000478"
     CDS             complement(24648..25715)
                     /gene="murG"
                     /locus_tag="OQP62_000478"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HCS1720117.1"
                     /translation="MSGQPKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTSDR
                     MEADLVPKHGIDIDFIRISGLRGKGVKALLAAPLRIFNAWRQARAIMKRFKPDVVLGM
                     GGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNQWLAKIATTVMQAFPGAFPNAEVVGN
                     PVRTDVLALPLPQVRLAGRDGPIRVLVVGGSQGARVLNQTMPQVAARLGDTVTIWHQS
                     GKGAQLTVEQAYAGAGQPQHKVTEFIDGMAAAYAWADVVVCRSGALTVSEIAAAGLPA
                     IFVPFQHKDRQQYWNALPLENAGAAKIFEQPQFTVEAVADTLAGWSREALLTMAERAR
                     AVSIPDATERVASEVSRVART"
     gene            complement(25712..26956)
                     /gene="ftsW"
                     /locus_tag="OQP62_000479"
     CDS             complement(25712..26956)
                     /gene="ftsW"
                     /locus_tag="OQP62_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsW"
                     /protein_id="HCS1720118.1"
                     /translation="MRLSLPRLRMPRVPGFGLLAWLFAALKGWVMASRDKDADSLIMY
                     DRTLLWLTFGLAAIGFVMVTSASMPVGQRLANDPFLFAKRDALYIFLAFCLAMVTLRL
                     PMTFWQKYSTTMLIASIIMLLIVLVVGSSVNGASRWIALGPLRIQPAEFTKLSLFCYL
                     ANYLVRKVDEVRNNLRGFLKPMGVILVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAK
                     LWQFIAIIGMGISAVILLILAEPYRIRRVTSFWNPWEDPFGSGYQLTQSLMAFGRGEI
                     WGQGLGNSVQKLEYLPEAHTDFIFAIIGEELGYIGVVLALLMVFFVAFRAMSIGRKAL
                     EIDHRFSGFLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIM
                     FLLRIDYETRLEKAQAFTRGSR"
     gene            complement(26956..28272)
                     /gene="murD"
                     /locus_tag="OQP62_000480"
     CDS             complement(26956..28272)
                     /gene="murD"
                     /locus_tag="OQP62_000480"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HCS1720119.1"
                     /translation="MADYQDKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRVTPPGL
                     DKLPQEVERHVGGLNDEWLLAADLIVASPGIALAHPSLSAAASAGVEIVGDIELFCRE
                     AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDADRELYVLELS
                     SFQLETTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYEKAKVCVVNADDALT
                     MPVRGADERCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAA
                     LALADAVGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKATNVGSTEAALNGL
                     HVDGTLHLLLGGDGKSADFSPLARYLTGDRIRLYCFGRDGAQLAALRPEIAQQTETME
                     EAMRLLAPHVQPGDMVLLSPACASLDQFKNFEQRGDVFTRLAKELG"
     gene            complement(28275..29357)
                     /gene="mraY"
                     /locus_tag="OQP62_000481"
     CDS             complement(28275..29357)
                     /gene="mraY"
                     /locus_tag="OQP62_000481"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HCS1720120.1"
                     /translation="MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRM
                     IARLQKLSFGQVVRNDGPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYVWCVL
                     VVLIGYGIIGFVDDYRKVVRKDTKGLIARWKYFWMSVIALGVAFALYLVGKDTPATQL
                     VVPFFKDVMPQLGLFYILLSYFVIVGTGNAVNLTDGLDGLAIMPTVFVAAGFALVAWA
                     TGNMNFANYLHIPYLRHAGELVIVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGA
                     LGIIAVLLRQEFLLVIMGGVFVVETLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWP
                     EPRVIVRFWIISLMLVLIGLATLKVR"
     gene            complement(29351..30709)
                     /gene="murF"
                     /locus_tag="OQP62_000482"
     CDS             complement(29351..30709)
                     /gene="murF"
                     /locus_tag="OQP62_000482"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HCS1720121.1"
                     /translation="MISVTLSKIADVLGAEHRGADLTLDTVITDTRKVTPGCLFVALK
                     GERFDAHDFADKAKANGAGALLVSRPLDIDLPQVIVKDTRQAFGQLAAWVRMQVPARV
                     VALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNNDIGVPITLLRLNHDYDYAVIELG
                     ANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMN
                     ADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP
                     LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYN
                     ANVGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGK
                     LSQVISHASGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEKG
                     SC"
     gene            complement(30706..32193)
                     /gene="murE"
                     /locus_tag="OQP62_000483"
     CDS             complement(30706..32193)
                     /gene="murE"
                     /locus_tag="OQP62_000483"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HCS1720122.1"
                     /translation="MADRNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGH
                     QADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFY
                     HEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTG
                     SAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDM
                     AHYEAAKWMLYSTHHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKA
                     EAVEYHDRGVTIRFASSWGEGEIESCLMGAFNVSNLLLALATLLALGYPLTDLLKTAA
                     RLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK
                     GKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTN
                     AIMQAKDNDVVLIAGKGHEDYQIVGTQRLDYSDRVTAARLLGVIA"
     gene            complement(32180..33946)
                     /gene="ftsI"
                     /locus_tag="OQP62_000484"
     CDS             complement(32180..33946)
                     /gene="ftsI"
                     /locus_tag="OQP62_000484"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000642204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase FtsI"
                     /protein_id="HCS1720123.1"
                     /translation="MKAAAKTQKSKRQEEQTNFISWRFALLCGCILLALVFLLGRAAW
                     LQIIAPDMLVRQGDMRSLRVQEVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAG
                     GISVGDRWKALSTALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIH
                     LREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVI
                     EDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMA
                     NSPSYNPNNLAGTPKDAMRNRTITDVFEPGSTVKPMVVMTALQRGIVNENTVLNTVPY
                     RINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLG
                     LVGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVD
                     PPVPGERIFPESTVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYI
                     NKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPD
                     ALATGEKNEFVINQGEGTGGRS"
     gene            complement(33962..34327)
                     /gene="ftsL"
                     /locus_tag="OQP62_000485"
     CDS             complement(33962..34327)
                     /gene="ftsL"
                     /locus_tag="OQP62_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HCS1720124.1"
                     /translation="MISRVTEALSKVKGSIGSNERHALPGVIGDDLLRFGKLPLCLFI
                     CIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIAT
                     EKLQMQHVDPSQENIVVQK"
     gene            complement(34324..35265)
                     /gene="rsmH"
                     /locus_tag="OQP62_000486"
     CDS             complement(34324..35265)
                     /gene="rsmH"
                     /locus_tag="OQP62_000486"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HCS1720125.1"
                     /translation="MMENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQ
                     LGEEGRLLAIDRDPQAIAVAQTINDPRFSIIHGPFSALADYVAERELTGKIDGILLDL
                     GVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERF
                     AKRIAHAIVERNREQPMTRTKELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEE
                     IEQALKSSLSVLASGGRLSIISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKL
                     GGRELRALGKLMPGEKEVAENPRARSSVLRIAERTNA"
     gene            complement(35267..35725)
                     /gene="mraZ"
                     /locus_tag="OQP62_000487"
     CDS             complement(35267..35725)
                     /gene="mraZ"
                     /locus_tag="OQP62_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HCS1720126.1"
                     /translation="MFRGATLVNLDSKGRLTVPTRYREQLIESATGQIVCTIDIHHPC
                     LLLYPLPEWEIIEQKLSRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHA
                     GLTKEVMLVGQFNKFELWDETTWYQQVKEDIDAEQSATETLSERLQDLSL"
BASE COUNT         8377 a        10536 c         9155 g         8113 t
ORIGIN      
        1 tgtccttatc ttccatgagc tgggcgatac gtttgtcgcc aatgcgctga atatcgtggt
       61 tctcaccgcc gcgctatcgg tttataacag ctgcgtttac tgcaacagcc gtatgctgtt
      121 cggtctggcc cagcagggaa atgcgccgaa agcgctgctg aacgtcgaca aacgcggcgt
      181 gccggtgagc tccattttgg tttccgccgt cgtgacggcg ttgtgcgtgc tgctcaacta
      241 cctggcccca gagtccgcat tcggactgct gatggcgctg gtggtctccg cgctggtcat
      301 taactgggcg atgattagcc ttgcccatat gatgttccgt cgcgcgaaac agcagcaggg
      361 cgtgaaaacc cgcttcccgg ccctgtttta tccgttcggc aacgttctct gcctgctgtt
      421 tatggcggcg gtattgatca ttatgctgat gacgccaggt atggcgatct ccgtgtggct
      481 gattccggta tggctgctca tcctgggcgt cggctacctg tgtaaagaaa aaacggcaaa
      541 aacggtgaaa gcccactgat cgtggcgtta cttttccgcc ctccccgtcc ggggagggtg
      601 ttatctgcct cacagtttcc cacgtataac cattttatcc atatcagcgg cgtgatcctg
      661 ctacgcaaaa aaaagctcgc aggcgaataa ttaccgccat catctgatgg ggagaagtct
      721 caatggataa gggcagactt tcggtaagag agaaaatcgg gtatggcatg ggtgacgccg
      781 gatataacat tatttttggc gctatcatgc tgtttgttaa ttacttttat acggatattt
      841 ttggtcttgc cccagcgtta gtcggtgttt tactcctttc agtacgcgtt atcgatgccg
      901 ttaccgatcc ggtgatgggc gcgcttgccg atcgtaccca aagtaaatat ggtcgtttcc
      961 gcccctggct actgtggatt gcatttccct acgcgctgtt cagcgttctg atgttcacga
     1021 cgccggactg gggctataac agcaaagtta tctatgcctt cgtcacctat tttctgcttt
     1081 ccgtgaccta taccgccatc aatattccct attgctcact gggcggcgtg atcactaacg
     1141 atccaaaaga gcgcgtagcc tgtcaggctt atcgcttcgt gttagtcggc atcgcgacgc
     1201 tgttgctatc gttaacgcta ttgccgatgg tggactggtt tggcgacggc gacaaagcca
     1261 aaggctatca gttggcgatg accgtgctgg cgattatcgg catgggtatg tttctgttct
     1321 gctttgccag cgtccgcgaa cgcgttcgcc ctgccgttcc gacgcacgat gatatgaaga
     1381 atgatttcaa agatgtgtgg aaaaacgatc aatgggtacg cattctgcta ttgaccttat
     1441 gtaacgtctg cccggggttt atccgtatgg cggcgaccat gtattacgtc acctgggtga
     1501 tgggacaaag cacccatttc gctacgcttt ttattagtct tggcgtggtc ggtatgatga
     1561 tcggcagtat gctggcaaaa gtcttaaccg atcgctggtg taaattgaag gtatttttct
     1621 ggaccaatat cgcgctggcg attttctcct gcgcgttcta tttctttgac ccgaaagcca
     1681 ccgtgatgat agtggcgctc tacttcttgc tcaatattct gcatcagatc ccttccccgt
     1741 tacactggtc gctgatggcg gacgtcgatg attacggcga atggaaaacc ggcaaacgca
     1801 ttaccggtat tagcttctcc ggtaatctgt tcttcctgaa actgggcctg gcgattgccg
     1861 gggcgatggt cggctttttg ctctcctggt acggttatga cgccagcgcc aaagcgcaaa
     1921 gcgcctcggc gatgaacggt attatgctgt tgtttaccgt tatccttggc gttggctatc
     1981 tgattaccgc aggcgtggta cgtctgctga aagttgaccg tgaactgatg aaaaaaatcc
     2041 aggacgattt ggaaaaacgt cgcactaatt accgcgaatt gagtgagttg caggagctca
     2101 aagccgctga aagcgtaagg aaagcctgat ggcaaactgg ccaaacccgt ttattgaaca
     2161 acgtgccgat ccgtttattt tacgcgacgg cagcgattac tactttattg cctccgtacc
     2221 ggaatatgac aggctggaaa tccgccgggc tgattcgctg gaagggttgc gcgccgccga
     2281 ccccgttgtc gtctggcgca aaccggaaag cggcccgatg agccagctca tctgggcacc
     2341 ggaaatgcac cgcatcaacg gtaagtggta catctatttt gccgctaccc atactcaagc
     2401 gcttgataaa ctgggaatgt tccagcaccg catgtttgcc ctggagtgcg ccgatgccga
     2461 cccactcacc ggcaagtgga cggagaaggg tcaaattaaa acgccgtttg ataccttctc
     2521 cctcgatgcc accacttttt atcatcaggg aaaacagtgg tatctgtggg cgcaaaaagc
     2581 gccggatatt gccggtaact caaatattta tctggctgaa ctggaaaatc cgtggaccct
     2641 taaaggcgag ccggtaagac tcagtaagcc agagtacgac tgggaatgtc ggggtttttg
     2701 ggttaacgaa ggtccggccg tcgtggtgca tggcgacaag ctgtttatca gctattcggc
     2761 cagcgccacc gatgaaaact actgtatggg gttactgtgg attaacgtaa acgacgatcc
     2821 gcgcgatccg gccaactggc ataaatcacc gcgcccggtc tttaccacca gctatgaaaa
     2881 tcgccagtat gggccgggac acaacagctt tacgcaaacg tcggaaggtg aagatgtact
     2941 ggtgtaccac gcgagaaatt acaccgaaat tgaaggcgat ccgttgtacg atcccaaccg
     3001 ccatacgcgt ctgaaacggg tgcgctggga cgaaaacggg atgcctgatt ttggcgtgcc
     3061 gccagccgat acgatctaag ccgttgcact gcccggtggc gctagcgctt accgggccta
     3121 cagatttttc cattgtaggc agcataagcg ttagcgctat cggcacaaca ttacactaat
     3181 gccccataaa tggtgagcaa cgcaataatc accaccacca caaacgaggc cttcttcgcc
     3241 atcgataccg ccgctttggg ggtttctact ttgtcagtat gcggttcgcg caccagtgag
     3301 aactgcgcca gacgtgtgag cacctgatat tgcgaagtat gcagatccgc cagcgaggca
     3361 aaccaggccg gcaacgcttt ctcgccatgc cccagtaatg catacactac gcccgccaga
     3421 cgtaccggaa tccagtccag tacatgaaga atagcgtcaa tgccggattg caaacgttgg
     3481 tgcggcgtct gatagcgcgc cagccaggtc tgccaggccc gtaaaaacgc atagcccacc
     3541 agcgttaccg gcccccacgg accgccaacg ataaaccaaa atagcggtgc gaggtaaaaa
     3601 cggaaattta tccataacaa cgcgttttgc agctcacgca aaaactcacg ctcattacaa
     3661 tccggcggca cgccgtgaat cagcgtaagc tcgctggcca tcgcctcgca aggatgcgga
     3721 tcgttacggg acgccgcttt cagccaggcg tgataatgta ctcgcacttt gcccgcgccg
     3781 atacacagca cgcccaggag aatccacacc accagcgtcg gcacgttaaa tagcagccct
     3841 tttaacgcct ggagcagtag aaaagtcacc accatcgcga tcgccgtcat tcccatcgtg
     3901 cgcaacatcg aaaaatgcgt aatccgacgg aatagcgcct ccagccgatg atcgagctgc
     3961 cagtgctcgc ccagcttaaa caggcgctcg acaatcagca ccagtaatgt cgtaaacagc
     4021 gtcatgtcat ctccttgtgc gacgaaaggg ctaccaaagc gcgaaagcgc ggccagtcaa
     4081 aggcagggcc agggtccgtt ttgcggtcag gcgcaatgtt gcagtgtccg gtcatattgt
     4141 cggcgatcgc cggatagcaa gcgataagcg tgcgcgtcac ggcggctagc tgctgatact
     4201 gcgcatcggt ataagccagc gtatccgtcc cctccagctc aataccaatg gagaaatcat
     4261 tacaacgttc ccgcccctga tagtttgata cgcccgcatg ccacgcacgc ttatcaaaag
     4321 gcacatactg gacgatttca ccgtcgcgac gaatcagaca atgggccgaa acacgaagat
     4381 gagcgatttc tgcaaaaaaa ggatgggcgt ctggatctat cgttccggtg aataatgcat
     4441 cgatccacgg accgccaaac tcgccggggg gcaggctaat attatgcacc accagcaagg
     4501 acggtttttc gtcatccgga cggcaatcat aatgcggaga agggacgcgt cgcgcctcta
     4561 ccaaccaacc cttatctggc aacatgcgga gtctcctttt gagtggtgct tatagctgct
     4621 tcagagtagc atgtttctac cttatgattc gttagcaatt tggagtttta tcatgccgcc
     4681 tcgccgttat aacccagacg accgacgtga cgcgctactg gaacgcatta atctcgatat
     4741 ccctgccgcc gttgctcagg cgctgcgtga agatttaggt ggagaagtcg atgctggcaa
     4801 cgatatcacc gcgcaacttt tgccggcaga tacgcaagcc catgccacag tgatcactcg
     4861 tgaagacggc gttttctgcg gcaagcgctg ggttgaagag gtcttcatcc aactggcggg
     4921 cgatgatgtg cgcctcacct ggcatgtcga tgacggcgac gccattcacg ccaaccaaac
     4981 agtgtttgaa ctgaacggcc ccgctcgcgt attgctgacc ggcgagcgca cggcgctaaa
     5041 ctttgtccag accctttccg gcgtcgccag tgaagtacgc cgctacgttg gactattggc
     5101 tggcacccaa acccagttgc tcgacacgcg taaaacgctg ccgggtctgc gcaccgcgct
     5161 caaatatgcg gttttatgcg gcggcggcgc caatcatcgt ctgggtctca ctgacgcgtt
     5221 cctgattaaa gaaaaccata tcatcgcctc cggttcggtt cgtcaggcgg tggaaaaagc
     5281 gttctggcta catccggacg tgccggtaga agtcgaggtc gaaaatctgg atgaactgga
     5341 cgatgcgctg aaagcaggcg cggatatcat catgctggat aatttcaaca ccgaccagat
     5401 gcgcgaggcg gtgaaacacg tcaacggcca ggcgcggctg gaagtatccg gcaacgtcac
     5461 cgcggaaacc ttacgcgaat ttgctgaaac cggggtggat ttcatctccg ttggcgcgct
     5521 gaccaagcac gtgcgcgcgc tcgatctctc catgcgtttt tgctgatcct ctccgcccga
     5581 tggcgctgcg ccgtcgggtc tataaatcac ctgtccgtag atccgcgtcg tgattcggta
     5641 aaatattcgt agcgcctcgc aataacgttg ccgtgtcatg taacgcagcg aaaatcttca
     5701 gaatccgcct tcccgtttta ccttttgccg ctcgcccgct cttcccttgt ttgccacagt
     5761 agcgccggct aactcaagga gcgaacaatg gaaaaacaac gcggtttcac gcttatcgaa
     5821 ctgatggtcg ttattggcat catcgccatt ttaagcgcca ttggcattcc ggcttaccag
     5881 aactatctgc gtaaagcggc gctgacggat atgttgcaaa catttgtccc ctaccgtact
     5941 gccgtcgaac tctgcgctct ggaacatggt gggacgagca catgcgatgc gggcgtcaac
     6001 ggtatcccct cgcccgtcat cacccgttat gtttcgggca tgagcgtgga aaaaggcgtc
     6061 atcacgctta ccggtcagga gagtctgagc gggcttagcg tcatcatgac gcccgcctgg
     6121 gacaatgcta acggcattac cggctggacg cgtaactgca atattcaaag cgacagcgcg
     6181 ttacaacagg cttgtgaaga tgtcttccgt tttgacgcca actaaggaga caagatgaaa
     6241 gacgctcagc tcaacacctt gtgtcaacgt catcaggctg tactgatcaa tagcgccagc
     6301 aacagtatca ctgttgcggt ggtcgacgcg ccctctcatg cgttattgga cgctctgcat
     6361 ttcgccacgc aaaaacagat tgatattgtg tgctggactc gccagcaaat ggaaaatcat
     6421 cggcataagc cggatcaggc accctcgaca aacgccgcga aaggcggaga aaccgcggcc
     6481 cagcttctca atcagacatt acgctcggcg atggcgaaac gcgcctctga tatccatctc
     6541 gaacccggcg ccagccgcta ccggataagg ctccgcatcg atggcgttct tcatattctg
     6601 caggacatcg ccaaagagac ggggcttgcg ctgacggcca gattgaaagt cctaggaaat
     6661 ttggacatcg ctgaacatcg gctgccgcag gacgggcaat ttaccgttga cctgacgggc
     6721 gacagcatct cttttcgtat cgccacgctt ccctgtaaag aaggcgaaaa agtcgtctta
     6781 cggttgttgc atcaggttga acaaacgctg gatctggaca cgctgggcat gtacggggca
     6841 caacttaccg cttttagaca agccctacag caacctcagg ggctggtact ggtgactggc
     6901 cccaccggta gcggaaaaac ggtcacgcta tacagcgcgc tacaaacccg gaatacgccg
     6961 ggtatcaacc tctgtagcgt tgaggatccg atagaaattc cactggatgg gattaaccag
     7021 acgcagatcc atccccgcgc cgggctcacc tttcaaaatg tgctgcgcgc gcttttacgc
     7081 caggaccctg acatcatcat ggtaggtgaa attcgtgacg gcgacaccgc agaaatcgcc
     7141 attaaggcgg cacaaacggg ccatctggta ctttcaacac tccatacgaa ctccaccagc
     7201 gaaaccctga tacgtttgca gcaaataggc gtaacacgct ggatgatctc atcggcgctt
     7261 acgctggtgg tagcgcaacg cctggtaagg aagctttgcc cgcactgcaa acagcgtctg
     7321 agcgatcccg tggtgctatc gcccaatctt tggcccagcg cgctaccgcg ctggcaggca
     7381 aacggctgtc agcattgcta ccacggcttt tatggccgaa ccgcgttatt cgaagtgtta
     7441 accgttaccc cggcattacg tcagttaatt gcgagcggcg catcggcgca agcactggaa
     7501 gcccacctcc agcagaccgg tacagggacg ctttttgaaa atggctgtcg cgccgttgag
     7561 caaggcatga cgtcctttga agagatactg cgcgttctgg gaatgcccca tgagcgttaa
     7621 acagctctgg cgctggcaag gcgttaacga taaaggtcaa ctggaacaag acgttgtatg
     7681 ggtggacaat cgtctggcgc tgatcatcac cctgcaacat cagcgcatta tgccgcttcg
     7741 catcaagcgc ataagcgtta acgccgcact gtggaaagaa gagcaaagcg ctgaaattat
     7801 tcatcagttg gccacgctca ttcatgccgg actgacgctt tctgaagggc tggaactcct
     7861 tgcgaaacag catccccacc gacaatggca agcgctgttg cgcacgctgg ctcacgagct
     7921 tgaacagggc gtcccttttt ccagcgcatt agtctcctgg ccgcaggtat ttccgccgct
     7981 ctaccagacg atgatccgca ccggagaact gaccggcaaa ctggccgaat gctgctttga
     8041 actggcccgt cagcaaaaag cgcaacggca gattacggtt agcgtgaaaa aggcgctgcg
     8101 ctatcccgcc attattctaa caatggccgc cctggtcgtt ttcgccatgc tgcactttgt
     8161 cctgccggaa tttgccgcca tttaccgtag cttcaatacc ccgcttcctc ttctgacacg
     8221 cggtattatc gcgatagcgc aatgggggcc ggcatggggt tggctcatct tgttcctgac
     8281 gatgctcgtt gctatcgctc accgcaggtt aaaacaaaaa ccgtcctggc aagcgcagcg
     8341 gcagcgtctt ctgctacggc ttcccgttat gggtcgcctg ataagaggcc agaaactagc
     8401 gcaaatattc accgtactgg cattaaccca aagcgcaggc attccttttc ttcagggact
     8461 ggaaagcgct atcgatagtc tcggctgccc ttactggtca cagcgtttaa cgcaggtaca
     8521 tcaggagatc gccgcgggca atccggtctg gttggcgcta aaaaataccc aggaatttag
     8581 tccgctatgc ctgcaactgg tcagaacggg cgaagcgtcc ggttcactcg atatcatgct
     8641 gcataacctt gcccgtcacc acagtgaatc tacgctggcg ctggccgata atctggcgtc
     8701 gctgttggaa ccggcgttat tgatcatcac cggcttaatt atcggtacgc tggtggtggc
     8761 gatgtatttg ccgatttttc atttgggaga cgcgatgagc gggatgggat aaggctggcg
     8821 cacatttacg ccagccagaa tattagaggc tattgaaaat gcggttttct tgttcctgca
     8881 cccgaataaa ggtggtgcgt ttggtcaact ctttcaggcg agacgcgccg acataagtgc
     8941 aggctgagcg tagaccgccc aggatatcgc gggcggtatt gcccaccggc ccacgcagtg
     9001 gcaatttaac cgttttacct tctgccgcgc ggtatttcgc aacgccgccg acatgacggt
     9061 tcatcgcaga ttccgaactc atgccgtaga acagcatgaa tttctcgcca ttctcttcta
     9121 ccacgctgcc gccgctctct tcgtgacccg ccagcatacc gcccaacata acgaaatccg
     9181 cgccgccgcc gaaggctttt gctacgtcgc ctggcatggt gcagccgcca tcgctgacga
     9241 tcatgccgcc caggccatgc gccgcgtcag cacattcgat aaccgccgac agttgcggat
     9301 aaccgacgcc ggtttttaca cgcgtcgtgc atacggagcc gggaccaatt cccactttca
     9361 cgatatcggc gccggagagg ataagctctt cgcacatctc gcccgttacc acattgcctg
     9421 cgcagattgt ttttgacggc catgcttcac gcgcttttgc gacgaactgc acaaaatgtt
     9481 ctgaatagcc attggccaca tcaatacaga caaagttcag cgcaggattc agcgccagaa
     9541 tctgcacggt tttttcgaaa tcagcatcag aggtcccggt ggaaaccatc acatgcttga
     9601 gaacatcagc cgaagccgtg ttgataaaag ctgcccactc ttcaacgcta taatgtttat
     9661 gtacagcggt cagaatatca aacccggcca acgcttgcgc catttcaaac gtcccgacgg
     9721 tatccatatt ggccgcgata atcggtacgc cagaccaggt ctgacctgag tgtttaaagg
     9781 tgaattgacg ttccagttcg acatcggaac ggcttttgag ggtagaacgc ttaggacgga
     9841 taagaacgtc tttgaaacct aacttcagat cttcttcaat acgcatgtgc ggattcctga
     9901 ggttaatggc gaaaaatcga aactcacaac tccagtgacg ctatcatacg cactaatcat
     9961 ggccgtacaa gactcagaaa ttctcttttt ttacgttaca atcccataaa tttacctggc
    10021 gaatagtagg ttaatgctca gagcatatcg tctttgtatg tttaaaattt aaccttttga
    10081 ttatcaaact aaaattccgg aagctggaga tatgaggtat accgtagcct taaccggcgg
    10141 tattggcagc ggtaaaagta ccgtcgctga tgccttcgct gacctcggaa taaccgtcat
    10201 cgacgcggat attatcgcgc gccagatggt tgagccaggg cagcccgccc tgaacgcaat
    10261 agcggaacat tttggttctg aacttatcgc cgccgacggc acgttacgtc gccgggcact
    10321 gcgtgagcgt attttttcgc atccggaaga aaaagcctgg cttaacgctc tgcttcatcc
    10381 cttaattcag caggaaaccc aacgacagtt tcaacaggct acgtcgccct atgtgttatg
    10441 ggttgtgcct ctgctggttg aaaacaggtt gtatcaaaaa gccaaccgcg tactggtggt
    10501 tgacgttacg cccgaaacgc agctcatacg cacaatgcag cgtgatgatg ttacgcgcga
    10561 gcatgttgaa cacattctcg ctgcgcaggc gacgcgtgaa gcgcgccttg ccgtggcgga
    10621 cgatgttatt gataataacg gcgcaccgga tgctatcgca tcagatgtgg cccgcctgca
    10681 cgccagttat cttaagctcg cgtcgcagtt tgtctcacag gaaaaaccgt aatgcacacc
    10741 caggtcctat ttgaacaccc tctcaatgag aagatgcgta cgtggctgcg catagagttt
    10801 ttgatccaac agctctccat caacctgcca attgcagacc atgctggcgc actgcatttt
    10861 ttccgtaata tcagcgatct actggatgtg ttcgaacggg gcgaagtccg taccgaactg
    10921 ctgaaagaac tggagcgcca gcagcgtaaa ttacaggcct gggttgaggt tcccggcgtc
    10981 gatcaagacc gtattgaagc cctgcgccag cagttaaaat cggcgggcag cgtgctgatc
    11041 tccgccccga ggattggcca gcagctacgc gaagatcgct tgattgctct tgtgcgtcaa
    11101 cgcttaagta ttcctggcgg ctgttgcagt ttcgatttac ccactctgca tatctggttg
    11161 cacctacaac aggcgcagcg cgatgcccag attgaaagct ggcttgccag cctgaatccc
    11221 ctcacccagg cgctgacgct ggtgcttgat ctgatccgta attcagcgcc tttccgtaag
    11281 caaaccagcc tgaacggttt ttatcaggat aacggggacg acgccgattt gctgcgtctt
    11341 atgctgacgc tcgattcaca actttatccg caaatttccg gccataagag ccgttttgcc
    11401 attcgcttta tgccgctgga tagtgaaaat ggtctggtgc cggagcgtct tgattttgaa
    11461 ctggcctgtt gctaaggagt aaaaatgtct gacgtgaccg tcgtaaactg tccgacctgc
    11521 ggtaaaccgg tcgtctgggg ggaaattagc cccttccgcc cattttgttc taaacgctgt
    11581 cagttaattg atttgggcga atgggccgcc gaagagaaac gaatcgccag cagcggcgac
    11641 cagtctgata gcgacgactg gagcgaagag cgctaacggt gatagctctg ttgagacggc
    11701 aatatcgcct tatgacaaaa ataatcaata aatacgcgta gttttggcgc catatgcgcg
    11761 cggccgggat aatacaaata aaaccggtcc gccgcaggca gccactcctc aagtacggaa
    11821 cacaaccgcc catcctgtaa gtcttcgtgg acatcctgtt caaaaacgta ggttagctct
    11881 gccccatcac gcgcggcgga gagacgcaac gctttatcat tcaccattaa cgcggcttcc
    11941 ggcgtaattt ccagccgttg cgctccatga acaaactccc accgatatag cccgctctca
    12001 cgcgtaaaac gatggcaaag gcagcggtga ttgatgagct cctgaggatg cagcggcgtg
    12061 ccaaaacgcg caaggtatgc aggggatgct acgatcgccg ggcgtaaaac atcaccgagc
    12121 ggaacgacat tcatatcaag ttgtaccgca tcgccaaagc gaataccggc atcaaagcgt
    12181 tcgttaatta aatccacaaa accgtcattc acatcgatat ccagccgaat atcgggataa
    12241 tcgcgcatga agccggcgag attaggttgt aacagaagcg tggccgccgt gcgcggtacg
    12301 gtcaggcgta atgtccctcc gggtatatcg cggctctggc aggcatgttc catcgcctca
    12361 tcaatatggt tcaatgcggg tctgatactg gcaagaaagg catgtcctgc ttctgtcaaa
    12421 ccgacacgcc gggtggttcg gttcaataat ttcacgccaa gttcatcctc cagttgacgc
    12481 atattctgac ttaacgccga cgtggaaata tgtaactgcg ccgctgcccg cgtgaagcta
    12541 tggttttcag caatcatgca aaaagcatgc aatacggaca tcacatcatg acgcattatt
    12601 aagccagcct tcataaacca tgcttattcc ccctattttt catcttatac gccaggtata
    12661 gactgcctgc catgcacaaa atatcctcat ggaggcagta tgcaatatcg tacattaggc
    12721 gcaaacggac cgcgagtgtc agccatcgga ctgggatgta tgggcatgag cgcattttac
    12781 ggcgctcatg acgacagcac ctcaattaag acgctacatt atgcgttaga tcagggggta
    12841 acactgctcg ataccgcaga tatgtatggc ccttatacca atgaaaggtt agtcggaaga
    12901 gccatcgccg atcgtcgcga tcgggtattt ttagcgacga aatttggtat cgttctcgac
    12961 cctgctaacc ctatggcgcg tggcgtcaat ggcagaccgg agtacgttcg ccgtagttgt
    13021 gagcaaagcc tgcaacgcct gggggtcgat catatcgatc tgtactatca acatcgcgtt
    13081 gatccatcag ttcccataga agagactgtc ggtgcaatgg cggacctggt gcgcgaggga
    13141 aaagtgcgtt atctcgggct atccgaagca tcaacgcaaa cgctggaacg cgcccataac
    13201 gttcacccta ttaccgcgct gcaaagtgag tattcgcttt ggtcccgcga agcggaaatt
    13261 tcagcacttt ccacctgtga acggttgggt ataggattcg tcgcttacag cccgctggga
    13321 cgcggatttc tgaccggtac gattaaaacg ccagaagatt ttgctgcgaa tgacttccgt
    13381 cgcacaaatc ccagattcat gggtgagaac ttctcgcgca atttacgtct ggctgaagca
    13441 ataaaacaaa tggcacgcga aaaagagtgt acccccgcac aattagcgct ggcctggctg
    13501 ctggcccgca acaggcacct cgttcccatt cccggcaccc gccactgcgc cagggtggat
    13561 gaaaacctcg gcgcgttatc actgacccta agcccgcagg agctggcggc aattgaggcg
    13621 gtttttcctc acgacgccgc agccggcccc cgctactggc cggaaattat gtcgacatta
    13681 aatcgctaat aagatcgatg gggatcgtgt tgcgatcccc cactaaggcg caaattggcg
    13741 taatttacga ataatcggtt cattggccgg cggaaaatcg tccgtattca acgcgttttg
    13801 cgcgatccac cgtcccggct gtccttcttt cccccacggt tcgccctccc agcgttcaac
    13861 cagccaaaac cacagcgtaa tgtgtctatc cgggaattga tattccagag tgtcgaataa
    13921 tgtcacctgt gttggcgtaa tccccacctc ttcctgtagc tcccggatca acgcctgctc
    13981 tggtgtttcg ccggcttcaa tttttccgcc gggaaattcc agcttgttcg ccatatgcgc
    14041 atcagcggcg cgtcgggtaa taaaaatttc gtcgttcggg ttgcggataa tcccaaccgc
    14101 gatttgcagt tttttcatct tggtgcatcc ataaaaaagg cgcagtcgcc tgcgcctttt
    14161 tatctgtgtt caatgctagg ccgaataagc gtagcgccct tcggcaataa tgccagcacc
    14221 gaccgacctg atggcaacac attatgtctt atcaggccgg taagtttatc gcatcagctc
    14281 aggcgaccgt gacactgttt gtatttctta ccggaaccac aagggcaagg atcgttacgt
    14341 ccaatcttac gttcgccggt ttgggcggcc agatcggcag ccacggcggc atcgtcatcc
    14401 tgatggctta gctgctgcat ctgcgccaag cgctccgcct cttcgcgacg ctgcatttcc
    14461 atcgcttcga cctcttccgg catacgtacc tggactttgc tcagggtact gatcacttca
    14521 tatttcagcg attccagcat cgcggcgaac atagcgaagg attcgcgctt gtattcctgc
    14581 ttcggatctt tttgcgcata gccgcgcaga tgaataccct gacgcaggta atccatcgcc
    14641 gccaaatgct ctttccacag ggaatcgagc gtttgcagca tcacgccttt ttcgaaatga
    14701 cgcatcattt cagcgccaac cacctcttct ttacgctgat acacctcgat ggactgcgcc
    14761 aggatgcgct cacgcagcgt ctcctcatgc agctccggct ctttatccag ccattcggca
    14821 atcggcatct ccaggtcgaa gtcgtttttc aggcgttcct gcaaacccgg gatatcccac
    14881 atctcttcca gcgactgcgg cggaatgtag gcgtcgatag tcgccttaaa gacatcttcg
    14941 cgaatgctgt taatggtgtc gctcacgtca gacacatcca gcagttcgtt acgctgggta
    15001 taaattgcac ggcgctgatc gttcgccaca tcatcatatt ccagcagttg cttacgaata
    15061 tcgaagttac ggctttctac tttacgctgc gcgttagcga tagctttcgt cacccacggg
    15121 tgctcaatcg cttcgcccgg cttcattccc agtttacgca tcataccgga gacacgatcg
    15181 gaggcgaaaa tacgcatcag cgcatcttcc atcgacaggt agaaacggga agaacccgga
    15241 tcgccctggc gaccggaacg gccacgcagc tggttgtcga tacggcggga ttcatggcgc
    15301 tcggtgccaa tgatatgcag gccgccggca gccagaaccg cgtcatggcg tacctgccag
    15361 tccgctttaa tctgcgcaat ctgttcttcc gtcggcgctt ccagcgcagc gacttccgcc
    15421 tgccagctac cgcccagcat aatatcggta ccacgacccg ccatgttggt agcgatagtg
    15481 accgccgctg gataaccagc ctgcgcaacg atgcctgctt cgttggcgtg gaattttgcg
    15541 ttcagtacgt tatgtttgat gcccgctttg gtcagctctc tggagaccac ttcagatttc
    15601 tcgatagaaa tcgtcccgac cagcactggc tgaccgttcg cggtacgttc tttaatatct
    15661 tcgataatgg cctggatttt ttccgcttcg gttatgtaga ccagatccgg caaatcttta
    15721 cggatcatcg gacggttggt cggaacaacg acggtgtcca gcttatagat agaactaaat
    15781 tcgaaggctt cagtatccgc cgtaccggtc ataccggcca gcttttcata cagacggaag
    15841 tagttctgga aggtaataga cgccagcgtc tggttttcat tctgaatttc aacgccttct
    15901 ttcgcttcta ccgcctggtg cagaccgtca gaccagcgac gcccctgcat ggtacgaccg
    15961 gtatgttcat caacaatgat gacttcgccg tctttcacaa tgtaatccac gtcacgggta
    16021 aacagcgcgt gcgcgcgcag cgcggcggtg acgtgatgca tcaacataat attgccaggc
    16081 gagtagagcg actcgccttc atccataatg ccttcttgca ccagtagctc ttcgatcagc
    16141 accagaccgc gttcggtcag gttaacctgg cgcgctttct catcaacgga gaagtggcct
    16201 tcgccctgga aagtgtcaga atcttctttc tcctgacgaa tcaggtgcgg aatgattttg
    16261 ttcacttttt tgtacatttc cgagctatct tccgccgggc cggaaataat cagcggcgta
    16321 cgcgcttcat cgatcaggat ggagtcaacc tcatccacca gcgcataatg cagtttacgc
    16381 tgcacgcgct cttccgggct gaacgccatg ttgtcgcgca ggtagtcaaa accgtattcg
    16441 ttgttagtgc cgtaagtgat gtcggcagcg taagcttcac gtttggctgg cgcaggcata
    16501 cctggcaggt tgataccaac ggacataccg aggaattcga atagcggacg gttgttttcg
    16561 gcgtcacgct gcgccagata gtcgttcacg gtcaccacat gaacgccttt gccggacagc
    16621 gcgttcaggt aggctggcag ggttgcggtc agcgtcttac cttcaccagt acgcatttcg
    16681 gcaatacaac gatcgttgag caccatgcca cccaatagct gaacgtcgaa gtgacgcatc
    16741 ccaaagacgc gtttactggc ttcacgcacc accgcgaacg cttccggaat caggctctct
    16801 acgctttcgc cttttccaat acgggcgcga aattcgttgg ttttcgcttt cagttcgtca
    16861 tcggagagtt tttccatctc cggttccatc gcattaataa ggctgacggc cttacgcata
    16921 cgacgcagcg tacgatcgtt acggctaccg aatactttgg ttaataattt gattagcata
    16981 ataaagtctc aaatgccccg cgccgcggag ctacaaataa agtaaaaggg tcttttttcg
    17041 ttagctgaga cgttgcggac cggcgcggat accctgcgcc tgacttatcc aggccgggat
    17101 gctaaatgcg gtttgtggcg caaaatacgc cagggagagg cggcgaacaa tcgccggcgg
    17161 cgtgccctcc tgcgtgagca tcgcgctgag cgtattcagt aaggcgatat gatgcgcctg
    17221 taatggcgac ggcgcgtcgg caacgggcag cgtttgcggc gccattgcaa aagaaaggtg
    17281 gcgaatcacc gtgcgaatag cgtgctgatg ccagtaatct acggtgaaat tgggacgacg
    17341 gttagaggct tctaacagcg caagatggct aaagttaact ttagacgcgg tgctggcggt
    17401 cgtccttgca ggcgtattgg tttcagcggc gttactgagc gcgggcaaac caaaactcgc
    17461 cgcgaccatc cctaataaga gatgcggcca gaagtatcgt ctgcctaact gtcgccagcg
    17521 cgtcagtatt ccactcacgt cattgccacc tgatatgccc ctcatgggct tacggaatca
    17581 aaacaatttg cgcacaaatc ttatcattaa agcgtacgcg ctacagcagt aatgacgaga
    17641 agctaaggtg aaaatcggct aagaaaacag cgaacgcgcc gtgtttccat ttaaccctgt
    17701 caaaatggct gtattaagga aagcgcagat aaaggatagt aaaaaaaaaa acgactagct
    17761 cgcctggccg gagagagtgc caggttaacc agtcgaattt tatacgacag cgtatgtcgt
    17821 tatgccagta ccgtcgaagg cgctttgaaa gccaacggca gttctgcgtc gtcctggaag
    17881 gtcacaaatt cccaggcttc ctgttttgcc aggactgcct gtaacaattt gttattcaat
    17941 gcgtgaccgg atttatacgc ggtaaacgca ccaataatat tgtgaccaca catgaacaag
    18001 tcaccgatcg cgtcgagcat tttgtgacga acgaattcat cttcaaaacg caggccgtct
    18061 tcgttcaata cgcgataatc gtcaacaacg atggcacaat cgaagctgcc gcccaggcac
    18121 aggccgcggg actgcagata ttcgatatca cgcataaaac cgaaggtacg cgcacggctg
    18181 atctggcgca tgaacgcatc cgcagagaag ttcatcgcgt agcgctggct gctggaatcg
    18241 atcgccggat ggttaaagtc gatggtgaaa tccaacgtaa aaccattgta cggtctgaat
    18301 tcagcccatt tatcgccatc ttcaacccga acagtctctt tgatgcgtac gaattttttg
    18361 gcgcagttca gtgcatcaat accggcatca agcagcaggt agacaaacgg agcggcactg
    18421 ccatccatga tcgggatttc cggggcatta acctcaataa cgatgttatc gatacctaag
    18481 cccgccagag cagcgttcag gtgctcaacg gttgaaatcc gtacatcatg ctcattcacc
    18541 agacacgtac agagcatggt atcacgcaca gatttggcat cggccgggaa atctaccggt
    18601 ggattcaagt cggtgcgacg atagatgacc ccggtattgg ccggcgcagg gcgtaatgtc
    18661 agggtgactt ttttgccggt gtgtaaaccg acgccagtcg cctgaacgat acgtttaagt
    18721 gtcctttgtt tgatcatcgt ataatctcgc caaattacct atccaaccga agtgtactat
    18781 acattcggcg ggccagttta gcacaaagag cccagaatcc caaattccag ctaattctta
    18841 atcagcttgc ttacgcagga atgcggggat atccagataa tccggctctt tcgccgcctg
    18901 tggcgcattg tcgttaacca ctttcgcgac cgttttttgc tcctgcgtca gcggcgccat
    18961 accgtgctgc tgataacgat ccaacaccgg ctgctgcacc tgtttattgg tgaccagagt
    19021 gatttcagga cgcttgtcca taccaattcc agtggcaaca acggtcacgc gcagttcgtc
    19081 gttcatatcc gggtccagag aggtaccgat aaccacggtg gcgttatccg acgcaaaggc
    19141 acggatggtg ttaccgacgg tttcgaactc atccagacgc aggtcgaagc ccgccgtaat
    19201 gttgaccaac acgccgcgcg cgccggacag gtcgatatct tccagcagcg gagaagaaat
    19261 agccatttca gccgcttctt ccgcacggtc ttcaccgctc gccacgccgg agcccatcat
    19321 tgcgtagccc atttcagaca tcacggtacg cacgtcagca aagtcgacgt tcatcaggcc
    19381 cgggcgggtg atcagctctg cgataccctg aaccgcgcct ttcagcacgt cgttagccgc
    19441 gccgaacgcg tcgagcaggg agatgccacg gcccagcact ttcagcagct tgtcgttcgg
    19501 gatggtgatc aacgagtcca catgcttgga cagctcggtg ataccctgct ccgcaaatgc
    19561 catgcgcttt ttgccttcaa aattgaaagg cttagtcacc acggcaacgg tcagaatacc
    19621 taaatctttt gccacttcag caaccactgg cgccgcgccg gttccggtac cgccgcccat
    19681 gcctgccgcg ataaatacca tgtctgcgcc ttcaagcgcc gcacgcagcg cttcacggtc
    19741 ttcgtccgcc gcattacggc cgacttccgg gttagcgccg gcgcccagac ctttggtaat
    19801 gccgctacca atttgaatgg tctggccaac cgccgtctta cgcaacgcct gcgcgtcggt
    19861 attcaccgcg aagaattcaa caccttcgat gcgctcgcgc accatgtgtt caacagcgtt
    19921 accgccgcca ccaccgacgc cgatgactgt aatcaccgcg tcgttggtta gttccatagg
    19981 ttcaaacata atctctctcc gtcatgtgcc tgtcgcctga ggccgtaata tctggcggcc
    20041 tcataaaaat taaaactctt ttcgcagcca gctattaagt cgcttgatcc acgagccaac
    20101 tgatgccgta acacgttttt ccacttctgc ttcaccgttt aagtgggact ctttcccgta
    20161 gtgaagcaat cccaccgccg ttgagtaata cggctcctgg gcataatccg tcagaccggt
    20221 gatattcagc ggcgcgccga tacgcacctg cgtatgaaac acgcgctgag cgcaagcagc
    20281 aagcccttcg atttgcgccg cgccgccggt taacacaatg cccgccgcca ggtgatgttt
    20341 taccccttgt tggcgaagct gttcctgtaa ttgcaatatc tcttcgttga ccagattgag
    20401 cagctcggtg taacgcggct caatcacttc cgccagcgtc tgacgttgca ggctgcgcgg
    20461 cggacgcccg cctacgctcg gtacttcaac gctttcgtct ttaccgacaa tggaacccag
    20521 cgcgcaaccg tggcgaactt taatggcttc agcatcgctc ggcggcgtac caaaggcata
    20581 agcgatatcg ctggtcacca cgttccccgc gtaagggatc actttggtat gacgcagcgc
    20641 gccgccagta taaacggcga tatccattgt accaccgccg atatccacga cacagacgcc
    20701 cagttcacgt tcatcttccg ttaacacgga ataactggcc gccagtccgg caaatatcag
    20761 ttggtcaact ttcagaccac aacgttcaac agctttgaca atgttttttg ccatatcgtt
    20821 gtggcaggta atcaaatgta ctttcgcctg catacgcacg ccggaaagac cgaccggatt
    20881 tttaatgcct tcctggtagt caatggcgta ctcctgagga atcacatgca gcacgcgatg
    20941 ttcatcgcgc acgcgcactg acttcgcagt atgcacgacg ttttccacat cttcctgcgt
    21001 cacttcctct tcggaaatgg gcaccatacc aatttcattc tgacagctaa tatgtttgcc
    21061 ggaaagcgcc agatataccg aggagatctg gcaatcagcc atcaattccg cctggtcaat
    21121 ggcgcgctga acgcatttca ccactgactc aaggtcattc accccgcctt tatccatacc
    21181 ccgcgatggg caactgccca cgccaatgat attgaccata ccgtcgggca gaacttcccc
    21241 tactaaagcg gcaaccttcg cggtgccaat ctccagtcct actaccagtt ttctgtccgt
    21301 cgccttgatc attgttgttc tgcctgtgcc tgattctgtt gctgattaga ttcctcaggg
    21361 gggagcggcg cccagccaac tgccgcacct gagtcataac gcaaatcaac gtagctaatc
    21421 cgtttgccat cggtttgcgc ctgctgctgt aaaaccggat agagttctac aaagcgagcc
    21481 aaccttttca tcgtatcgcc cctgccgaga ttgagcttaa tgccgttatt aagcgtcaat
    21541 tgccaggagc gacgtgcggt catcgccgct tcctttagag tgaatttatc cttagccagc
    21601 acctgcccca tctcgcggta tccctgcaac acttcactcg cgctgccttc cgggccgtac
    21661 aacatgggta aaacctgttt gccgatgcgg tctgacggca cgctgaaggt gttcccttca
    21721 gcatcgacca tatgttgatc attccaacgc gcaatcggca catattcaac cagatgaatc
    21781 ttcaattcat caggccactg ttttctgacg ctggcctgtt taatccacgg caaacgctca
    21841 atctggctct ggataatgtt cacatcctgc gtcatgaagg ttcccggcgc gcccagagcc
    21901 agtatcgcct gacggatatc atcgttacgc gtgtagtgac gctcgccggt taataccagc
    21961 tttgataacg gtaaacgctg cgcatcttcc atccacccta acacgaccca cccgctaaca
    22021 aacacggtgc acagtaccgt cagcaggaat aatattcctg caagacgcgt tccattattg
    22081 cggcgtgaag aaggcgtctc ttcatcactg tttcgcgtgt tcagcgcagc ctgcgacata
    22141 tcagtccgcc aactccagaa ttcgtaccac taactgcgag aagctcattc ccgcctgacg
    22201 cgccgccatc ggcaccagac tatggctggt catccccgga gaagtattgg cttccagcag
    22261 ataaaactga ccatcgctgt ccagcatgac gtcaatacgc ccccatcccg tgcagcctaa
    22321 agctttccat gcctgcagga cgagagactg tagcgcggct tcctgggacg cttctaaacc
    22381 ggcagggcag aaatactgag tctcatcaga gagatacttc gcctcataat catagaaggt
    22441 tcctgccggt tggatacgaa ttgacggtaa aatttcttcg ccaactatcg ccaccgtaaa
    22501 ttccggaccg cacagccatt tctcaatcag tatttcgtca tcatgctgaa aagccaatga
    22561 taacgcaccc tgtaaagcat tttcttctac tactttcgtc ataccgacgc tggagccttc
    22621 acggctgggt ttgacgatca gcggtaaacc cagcgccgaa attcgcgctt tttgttcttc
    22681 gctaaggcct ttttcaaact cagcgcgcgt cagcgcgacc cacggcgcaa ccggtaagcc
    22741 tgcgccctgc cacagcaatt tactgcgcag tttatccatg gaaagcgccg aggccatcac
    22801 gccgctgccg gtataaggca ggccgagcag ttcaagcatt ccctgtaagg tgccatcttc
    22861 accgccgcgg ccatgcaacg caataaagac cttctgaaag cccattgctt taagctgcgc
    22921 gacatcgacc tcttgcggat cgacgggatg cgcatcaata ccgccttcac gtaacccggc
    22981 caacactgcc gcgccggaat ttaacgaaac gtcccgctcc gcagaggttc cgcccaacag
    23041 gaccgcgatt ttatcagcca tgttgctctt cctcctggat ttgcggcttc agcttgattt
    23101 cagataagta acgcgcaatt ttgccaacat ttcctgcgcc ttgcactaat atcaagtcgt
    23161 tacccgtcag caccggcgct aacattgtcg caacctgagc cggatcggaa accagaatcg
    23221 ggtcaatttt tccccgatta cgaatcgtgc gacataaaga acggctatcc gcgcccggaa
    23281 tcggcgcttc gcccgccggg taaacgtcca gcatcagcag cgcatcgacc tgggtcagca
    23341 cattggcgaa atcgtcatac agatcgcgcg tgcgcgtgta acgatgcggc tgaaacagca
    23401 tcaccaggtt tttatccggc caccctgctc gcgcagcttt aatggtggcg tccacttcgg
    23461 tcggatgatg tccatagtca tccaccagca tcgccgtccc ggctttacca ttcaccggct
    23521 caagcgggaa ctcgccgagg aagtcaaaac gacgcccggt cccctggaag ctttccagcg
    23581 cgcgcaggat agcgtcatcg tcgatgcctt cttcggtcgc taccgccact gccgcggcgg
    23641 cattcagggc attgtggcga cccggcgcat tcaacgtgac atgcagatcc ggcattccct
    23701 ggcgcaacag cgtaaagtgc ccctgcggcc ctatctgctg ataatcttct acgcggacgt
    23761 cagcatcctc gctaaagcca tacgtcgtgg tctgacgccc cacccgcggc agcaactcgc
    23821 ggatgaccgg atcgtcgacg cacattaccg cgcgaccgta gaacggcagg ttatgcagga
    23881 agttaataaa cgtctgcttt aaattttcaa agtcgccatg ataggtatcc atatggtcgg
    23941 cttcgatgtt ggtgacgatc gcaaccatcg gctgcaaatg caggaaggat gcgtcgctct
    24001 catctgcctc ggcaatcagg taacgactat ggcccagacg cgcatgaacg cctgcggctt
    24061 tcaccaatcc gccattcacg aaagtcgggt ccagccccgc ttcggcataa atactggaca
    24121 ccatcgcggt cgttgtggtt tttccgtgcg tcccggcaat ggcgatgccg tggcgaaaac
    24181 gcatcagttc cgccagcatt tccgcacggc gaataaccgg aatacgcgct tcatgcgccg
    24241 cgacaatttc cgggttatcc gcggaaattg cgctggaaac gacgaccacg ctggcatcac
    24301 gcacattttc cggacgatgg ttaaagaaaa tcgtcgcccc caggctcgtc aactgctggg
    24361 tcaccggatt cggcgctaaa tcggaaccac tgatctgata cccttcattg gccagaactt
    24421 cggcaatacc gcccatacca gcaccaccga tgccgacaaa gtgaatgtgc cgaacgcgac
    24481 gcatttcggg cacgatggaa cgcagttttg ccagttgttg tgtattcatt ctttacgcca
    24541 ttaactccaa tacccgccat acttcaaatt gcagatgcgt tggcttgcct gcaacccaaa
    24601 ttattgaggg tagaaaaacc ctgcgatgca aaaggcaccg ccacaaatta tgtccgggca
    24661 acccggctga cttcactggc gacgcgctcg gtagcatccg gaatggatac cgcgcgggca
    24721 cgctccgcca tggttaacaa cgcctcgcgc gaccaccccg ccagggtgtc ggcgacagcc
    24781 tctacagtaa actgcggctg ctcaaaaatc ttagctgcgc cggcgttttc taacggcagc
    24841 gcattccagt actgctgcct gtctttatgc tgaaacggca cgaatatcgc cggtaacccg
    24901 gcggcggcga tctcgctcac cgttaaagcg ccggaacgac ataccaccac atccgcccac
    24961 gcataggcgg cggccatgcc atcgataaat tccgttacct tatgctgcgg ttgtcccgcc
    25021 ccggcatatg cctgctctac cgtgagctgc gcgccttttc cgctttgatg ccagattgta
    25081 accgtatcgc ccagtctggc ggcaacctgc ggcatcgtct ggttcaggac tcgcgccccc
    25141 tgagaaccgc cgaccaccaa cacgcgaatc gggccgtcac gaccggccag acgcacctgc
    25201 ggcaacggca acgccagtac gtcggtacgc accgggttac ccaccacttc cgcgttcggg
    25261 aacgcaccgg gaaacgcctg catcaccgtg gtcgcgattt tggccagcca ctgattggtt
    25321 agcccggcga taccgttttg ctcatgcaaa acgaccggaa tacccaatga ccaggcggca
    25381 agaccgccgg ggccggaaac ataaccgccc attcccagca cgacatccgg cttaaaccgc
    25441 ttcatgatcg cccgcgcctg ccgccaggcg ttaaaaatcc gcagcggcgc cgccagaagc
    25501 gcttttacgc ctttaccgcg cagaccggag atccgaataa agtcaatatc gatgccatgc
    25561 ttcggcacta aatccgcttc catacgatcg gaggtaccca gccagcgaac ctgccagccc
    25621 tgggccatta aatgatgcgc aacggccagt ccggggaaca cgtgcccgcc ggtaccgccc
    25681 gccatcacca ttaaccgctt cggttgacca ctcatcgaga acctcgtgta aacgcctgcg
    25741 ctttttccag acgcgtttca taatcaatac gtaataaaaa cataatggcc gtcgacataa
    25801 tcaacagact cgacccgcca taactgatca gcggcagcgt aagacctttg gtcggcagca
    25861 tccccgcggc cgcgccaacg tttaccagcg cctgaaaact aaaccagata ccgatagaac
    25921 acgctaaaaa tccggaaaaa cggtggtcaa tctccaatgc cttacggcca atcgacatcg
    25981 cgcgaaaagc gacgaaaaat accattaaaa gcgccaatac cacaccgata taacccagtt
    26041 cttccccaat aatggcgaag atgaaatcgg tgtgcgcctc cggcaaatac tccagtttct
    26101 gcaccgaatt ccccagccct tgcccccata tctcaccgcg accaaaagcc atcagcgact
    26161 gcgtcagctg ataaccgctg ccgaacggat cttcccaggg gttccagaac gaggtaacgc
    26221 ggcgaatacg atacggttcg gcgaggatta acagaatcac cgccgagatg cccatcccga
    26281 taatggcgat gaactgccat aatttcgccc cggcaagaaa cagcatcgcc agcgtggtga
    26341 caaacagtac gaccaccgtc ccgaggtcag gctgtgccag cagtaacacc gccagcacca
    26401 gaatcacgcc cattggtttt aaaaagccgc gcaggttatt tcgcacttca tcaaccttac
    26461 gcaccagata gttcgcgagg tagcagaaca gcgacagctt ggtaaactcc gcaggctgaa
    26521 tacgcagcgg ccccagcgca atccagcgcg acgccccgtt aaccgagctc ccgacgacca
    26581 gcacgataag cagcataatg atcgacgcaa tcagcatcgt cgtgctgtat ttttgccaga
    26641 aggtcatggg caaacgtagc gtgaccatcg ccagacaaaa tgccaggaag atatagagcg
    26701 catcacgttt ggcaaacaaa aacggatcgt tcgccaggcg ctgcccgact ggcatggagg
    26761 ccgacgtcac catgacaaaa ccaatcgccg ccagcccgaa ggtcagccat agcagcgtgc
    26821 ggtcatacat gatcagactg tcggcgtctt tatcgcgcga agccatcacc cagcctttaa
    26881 gcgccgcaaa cagccaggcc aggaggccaa agcctggtac gcgcggcatt ctcagacggg
    26941 ggagagataa acgcatcaac ctaactcctt cgccagacgg gtaaagacat cgccccgttg
    27001 ctcaaaattt ttaaactgat cgaggctggc gcaggcgggc gacaacagca ccatatcacc
    27061 cggctgaacg tgcggcgcca gcaaacgcat cgcctcttcc atcgtctcag tctgttgggc
    27121 gatttccgga cgcagtgcgg caagctgcgc gccatcgcgc ccaaagcaat acaggcggat
    27181 acgatcgccg gtcagatagc gcgccagcgg agaaaagtct gccgacttac cgtcgccgcc
    27241 cagcagcaga tgcagcgtac cgtccacatg caaaccgttt agcgccgctt cggtactgcc
    27301 gacattggtc gctttcgagt cgttgatcca acgaacgccg ttatgctcca acgccagctg
    27361 gaagcgatgc gccagaccgg taaatgtcgt caacgccttc aaactgctgg cgcgcggcag
    27421 acctacggca tccgccagcg ccagcgccgc taacgcattg gtatagttat gctgaccgga
    27481 aagcttcatc tctttcacgt tcagcacctt ctcacctttg actcgtagcc aggtttcgcc
    27541 ctgctgacga ttaaggtgat aatcacccat attgacgcca aagctgacgc agcgctcatc
    27601 ggccccgcgt accggcatcg tcaacgcgtc atcggcattc actacgcaca ctttcgcctt
    27661 ctcgtagacg cgcagtttcg ccgcccggta ctgttgcaaa ccaaacggat accggtccat
    27721 atgatcttca gtgacgttga gcaccgttgc cgccgccgct tgcaaacttg aggtagtttc
    27781 caattggaaa ctggataatt ccagcacgta caattcgcga tcggcatcca gcagcatcag
    27841 cgccggaaga ccgatattgc cgccaacgcc gacattgacg cccgccgcct tcgccatctc
    27901 gcccactaag gtggtcacgg tgcttttgcc gttcgagccg gtgatggcca caatcggcgc
    27961 ttgcgcttcg cggcaaaaca gttcgatatc gccgacaatt tccactccag cgctggcggc
    28021 agcgctaaga gagggatgcg ccagagcaat accagggctg gcgacgatta aatccgccgc
    28081 taagagccac tcgtcgttca ggccgccaac gtgacgctca acctcttgcg gcagcttatc
    28141 cagacccggc ggcgtcacgc gagtatccat cacccgcggc gtcacgccgc gggcgagaaa
    28201 aaagtccacg caagagagtc cggttaagcc cagaccgata atgacgacgt ttttgtcctg
    28261 gtaatcagcc atgattaacg taccttcagc gttgccaggc caatcagcac cagcatcagc
    28321 gaaataatcc agaagcgcac aatcacgcgc ggttccggcc agcctttcag ttcatagtgg
    28381 tgatggatag gcgccatacg gaaaatacgc tgtccgcgta gtttaaagga acccacctgc
    28441 aggatgaccg acagagtttc caccacaaag acgccgccca tgatcaccag cagaaattcc
    28501 tgacgcagca gcacggcgat aatgcccaac gcgccgccca acgccagcga tccgacatcg
    28561 cccataaaaa cctgcgccgg ataggtgtta aaccacaaga atcctaatcc cgcgccgaca
    28621 atcgccgtac agacaatcac cagctcgccc gcatggcgta aatacggaat atgcaggtaa
    28681 ttggcgaagt tcatgttccc ggtcgcccaa gccaccagcg caaagccggc ggcaacgaag
    28741 acagtcggca taatcgccag accatcaagc ccgtcggtca ggtttacggc gttacccgta
    28801 ccgacgatga caaagtagga cagcagaatg taaaacagcc ccaattgcgg cataacatct
    28861 ttaaagaacg gcaccaccag ttgggtcgcg ggcgtgtctt tcccgacgag ataaagcgca
    28921 aaggccacgc cgagcgcgat aaccgacatc cagaaatatt tccagcgcgc aatcagccct
    28981 ttggtatctt tccgcaccac tttgcggtag tcatcgacaa aaccgataat gccgtagccg
    29041 atcaatacca ccagcacgca ccagacgtac gggttagacg ggtaagccca taacagaacg
    29101 gaaatcacaa tcgccgtcag gatcatgatg ccgcccatcg tcggcgtacc gcgtttactg
    29161 aagtgcgatt ccgggccatc gttacgtacc acctggccaa aagagagttt ttgcagacga
    29221 gcgatcatac gcgggcccat ccataaagag atgaacagcg cggtcaacag gctgacgatg
    29281 gcgcgaaacg tcagataaga aaagacgtta aagccggaat aatatttgac caaatgctcg
    29341 gccagccaaa ctaacatgaa cctttctcct gtaacgcatg aaccacatct tccatcgcgg
    29401 cgctgcgtga tcctttcact aaaatagtca tcatcggttg ctcctgaagc agagcgtgta
    29461 aacgcgcaat gagcgcggct ttatcggcaa aatgttcgcc gacgccgctg gcgtggctga
    29521 taacctgact gagttttccg gtgcttaaca cgcgatcaat acccgccgct tttgcggcct
    29581 cgccaacctg gaggtggcac gcttcgcttt ctgcgcccag ctcggccata tcgcctacca
    29641 ccagcacgcg gtagccgggc atttcagaaa ggacctgcac tgcggcggtc atcgaaccga
    29701 cgttggcgtt ataagcgtca tccagtacca gttggttttc acttagttga atcgggaaca
    29761 gacgcccggg tacggctttt aacgccgcca gccctgcttt aaccgccgcc agcgtcgccc
    29821 ccaccgccat tgataaagca gcggccgcca gcgcgttggc aatattgtgc cgccccggca
    29881 acggcagcag cacatcaatg ctgcccatcg gcgtttgcag ggtaaattcg gtaccgtgtg
    29941 acgtcacgtg gatattcgca gcggtaaagt cgctgtttgc cgcattcggc gaaaagcgcc
    30001 acacctgacg atcgccaata atgctttgcc agttcagcca gtcattatta tcggcattca
    30061 taatcgcgat accgttctca ggcaaaccgg tatagatttc gcctttcgct ttcgccacgc
    30121 cggccagcga gccgaaacct tccagatgcg ccgccgccag gttattgacc agcgccgctt
    30181 ccgggcgcgt caggctaacg gtccaggcga tttctccctg gtgattagcg cctaactcga
    30241 tcaccgcata gtcataatca tggtttaagc gcagcagcgt tatcggcacg ccgatgtcgt
    30301 tgttaaaatt gcttgcggta tacaaagtat ttccgcactg gctaagaatc gcggcggtca
    30361 tctctttgac cgaggttttg ccggacgaac cggttaacgc caccacccgc gccggtacct
    30421 gcatacgtac ccaggcggcc agttggccaa atgcctgacg cgtgtctttt acaatcacct
    30481 gcggaagatc gatatccaga ggacgactga ccagcagggc gccagcgccg ttcgcttttg
    30541 ctttatcagc aaaatcatgc gcatcaaagc gttccccttt cagcgccacg aacaggcatc
    30601 ccggcgtcac tttccgtgtg tcggtaatga ccgtatcgag cgtgagatcc gccccgcggt
    30661 gttcggcgcc aaggacatcg gcaattttgc tgagcgttac gctaatcatg cgatcacccc
    30721 cagcaaacgc gctgcggtca cgcggtctga ataatcaaga cgctgcgtgc cgacaatctg
    30781 gtaatcctcg tgccctttac ctgcaatcag cacgacgtca ttgtcttttg cctgcataat
    30841 ggcattggtt accgcctcag cgcggccttc cattaccctg acctgcccgg cgtccagcat
    30901 tccggccaga atatcgttga taatggcgcg cggctcctcg gtacgcgggt tatcgtcagt
    30961 caccacgacg atatccgcga attcttcggc aatggccccc atgagtgggc gcttaccttt
    31021 gtcacgatcc ccgccacagc caaagacgca ccacaatttt ccggcgcagt gcaggcgcgc
    31081 cgcctgcaat gctttttcca gcgcatccgg cgtgtgcgcg taatccacca ccaccgtcgg
    31141 tttgcctggc gcagtgaaca cttccatacg cccgcaaacc ggctgcaaac gcgcggcggt
    31201 tttcagcaaa tccgttaacg gatagcccag cgccagcagc gtcgccaatg ccagcagtaa
    31261 gttgctgacg ttaaacgcgc ccatcaggca gctttcgatt tcgccttcac cccagcttga
    31321 agcaaaacga atcgtcactc cgcggtcgtg gtactccacc gcctccgctt tcagccaacg
    31381 accgtgacag ttagggttga tatgcccttc cattgaaacc gcgaccgcat cgggtagcga
    31441 cgccagccag cggcgtccaa cttcatcatc ggcgttgacg attgcctgac cgtgatggtg
    31501 ggtggaataa agcatccatt ttgccgcctc gtaatgcgcc atatcgccat gatagtcgag
    31561 atggtcgcgg ctcaaattag taaacacgga ggcggcaaat ttcagcgccg ccacgcgatg
    31621 ctgcaccagg ccgtgagaag agacttccat agcgccgaag gtcgcgccct gcgcaaccag
    31681 actggccagc acatgctgaa catccactgc ggaaccggtt gtgttctccg tcgggatcac
    31741 tttacccaac agtccgttac ctaccgtccc catcactgcg ctggtttcgc cgagcaactg
    31801 gctccactgc gccagtagtt gggtggtggt ggtcttgcca ttggtgccgg tcaccgccac
    31861 cagacgcatg ttttcagatg gctcatggta aaagcggccc gccagcgcag ataaacgctc
    31921 attgagctgg ctgagataga cgactggtac gccgtgcatt tcgcgaatct caccgtcact
    31981 cgcctcgtct ttcgcctctg caataatggc agctacgcct tgcgctatcg cctgcgggat
    32041 ataacgacgc ccgtccgcct gatgacccac cactgccaca aagagatcgc ccgccgcagc
    32101 cacacggctg tcgagcgtca tctctcgcag ttctcgcgcg ggtagtccag ccacccacgg
    32161 agcaagaagg tcgcgcaaat tacgatctgc cacctgttcc ctcgccttga ttaattacga
    32221 attcattttt ttcgcccgtt gccagcgcgt ccggttcgat gttcatggtg cgcagaacgc
    32281 cgcccatgat ggcaccaaat accggcgcgg aaacggcgcc gccgtagtat ttacccgcct
    32341 gcggatcgtt gatgacaacc accagcgcga agcgcggctg actcgcaggc gcgacgcctg
    32401 cggtgtaagc aatgtatttg ttgatgtagc gaccgtccgg ccccactttt ttcgccgtac
    32461 cggttttaat cgcgatacgg tagcctttaa ttgccgcctt cacgccgccg ccgcccggca
    32521 gcgccacgct ttccatcata tgcaccacgg tgcgtacggt ggattcaggg aagatgcgtt
    32581 cgccgggtac aggcggatca actttggtaa tcgacagcgg gcgataaatg ccatagctgc
    32641 cgatcgttgc ataaactcgc gctaactgta acggcgttac cattagcccg tagccgaaag
    32701 agaaggtggc cctctctatg tcggaccacc gttgtttttg aggatataag ccactgcgtt
    32761 ctccgaccaa ccccaaattg gtcgcctttc ctagcccaaa acgtgagtaa gtatctacta
    32821 acgctgagga cggcatcgct aacgccagtt tggatacacc gacgttactc gacttctgta
    32881 gaaccccagt cagggttaat tcgctgtagc gcgccacgtc tttaatttcg tggccgttaa
    32941 ttcggtatgg aacggtattc aacaccgtat tttcgttgac gataccgcgc tgaagcgcag
    33001 tcatcaccac catcggctta accgtagaac ccggttcaaa cacgtcggtg atggtacggt
    33061 tacgcatcgc gtctttcggc gtaccggcaa ggttgttggg gttataggaa gggctattcg
    33121 ccatcgccag tacttcaccg gtattgacat cgaccagcac cgcgctaccg gattccgcct
    33181 tgttaaacgc caccgcgttg ttcagttcgc ggtaaaccag cgcctgtaag cgttcatcaa
    33241 tgcttaacgc caggttgtgc gctgcctgac tgtcagtgga ggagatatcc tcaatcacgc
    33301 ggccatagcg gtctttacgc acgattcgct cgccaggctg accggtaagc cacttatcaa
    33361 agctcttttc aacgccttca atcccctgac tgtcaacgtt ggtaaaaccg atgaggtgag
    33421 cggttacttc tcctgacggg tagtagcggc gtgattcttc acgcaaatga atccccggca
    33481 gtttgagttt tttgatgtag tccgccatgt caggatttac ctggcgcgcc agataaataa
    33541 aacgcccttt cgggttggcg ttgatacggg cggagagctg atcgagcgga atattgagcg
    33601 cagtagaaag cgctttccag cgatcgccga cgctgatgcc gccggcgtca tgaacttctt
    33661 tcgggtcggc ccagatcgcc ttaaccggta cgctgaccgc cagtggacgc ccggaacggt
    33721 cggtaatcat accgcgtgag gtggagactt cctgaacacg cagcgaacgc atatcgccct
    33781 gacgcaccag catatccggg gcgataatct gtagccacgc cgcgcgtcca agtaaaaaaa
    33841 ccagcgccag taaaatacag ccgcacagca acgcaaaacg ccaactgatg aagttggtct
    33901 gttcttcctg gcgcttcgat ttttgcgttt ttgccgctgc tttcatgcgt cgcgtttatc
    33961 cttatttttg cactacgata ttttcttggg acggatcaac atgctgcatt tgcagctttt
    34021 ccgttgcgat ccgctctacc cggctgtgat cgccgagcgc attttcttca aggatcaggt
    34081 tgcgccattc aatgtccaat gcatcgcgct ccagaaccag ttgttcacgc tgagcggtga
    34141 gtaaacgagt atggtgcgcc gtcgtgacca ccgtcaccgc cgttaaaatg atgcaaatga
    34201 acaagcagag tggcagcttc ccgaaccgca aaagatcgtc accgatcacg ccaggcaagg
    34261 catggcgctc gttgcttcct atcgatccct taactttgct tagggcttct gtcactctgc
    34321 tgatcatgcg ttcgtcctct ctgcgatacg cagaactgaa ctacgggccc gaggattttc
    34381 agctacctct ttttcacccg gcatcaactt gcctaacgct cgtaactcac gaccgcccag
    34441 ttttttgagc tgcgcttccg tcatcggtaa tcccgccggt acctgcggac cgcggctttg
    34501 ctcacgcata aagcgtttca caatacggtc ttccagcgag tggaaactga tgattgaaag
    34561 ccgcccgcct gaggccagta cgctgagcga gctttttagc gcctgctcta tctcctccag
    34621 ttcactgttt acccagatgc gcaccgcctg gaaggtacgg gtcgcgggat gtttgaattt
    34681 gtcttttacc ggggtcgccg ccgcaaccac ttccgccagc tctttggtgc gggtcatcgg
    34741 ctgttcgcga ttgcgctcaa caatggcgtg agcaatacgt ttggcaaaac gctcctcgcc
    34801 gaatgttttc agcacccagg cgatatccgc ctcctccgcc gtttgtaacc actcggcggc
    34861 agactggccg cgcgtcgggt ccattcgcat atccagcgga ccgtcgcgca taaatgaaaa
    34921 accgcgctcc gcatcgtcaa gctgcggaga agagacgcca agatcgagaa ggatcccgtc
    34981 aatcttgccg gtaagctcgc gctcggcgac ataatcagcc agcgcggaaa aaggtccatg
    35041 aatgatggag aagcgaggat cattaatggt ctgcgcaacg gcgatcgcct gcggatcgcg
    35101 atcgatcgcc agcaagcgcc cctcttcgcc cagttgcgag aggatcaggc gcgagtggcc
    35161 gccgcgacca aatgtgccat caatatagat accatccgga cgaatattca gcccattaac
    35221 ggcttcatcc aacagtaccg tagtgtgttt aaaattttcc atcatcttat agagacaagt
    35281 cctgcagccg ctccgataac gtttcggtag ctgactgttc agcgtcgata tcttccttga
    35341 cctgttgata ccaggtcgtt tcatcccaca gctcaaattt gttgaactgt ccaaccagca
    35401 tcacttcttt cgtcagtccg gcatgttgcc gcagaactgg cgcgatcagt aatcgacctg
    35461 caccatccat ctgacattca ctggcatggc ccaacagtaa acgctgtacg cgacgttcta
    35521 ccgggttcat gctcgacaga cgagataact tttgctcaat aatttcccat tcaggcaggg
    35581 ggtaaagcag caggcatggg tgatggatgt caatggtaca tactatttga ccggtagcgc
    35641 tctcgatcag ttgctcccga taacgggtcg gcacggtcag gcgcccttta ctgtcgagat
    35701 tgactaacgt tgccccccgg aacatgccag tctcacccct tcttaccact ttatcccaca
    35761 aattcccact cgaaggagtt tacggagcgg aggaaaagct tgtcaagcaa gtcacaacgc
    35821 ttaccgaagt aaaaaagcca atgtttacgg cgaatatctg cgttgattaa tttccgccca
    35881 gcgcgcaagc caaattaacg ttatgaatat ttgtaagaaa aaaaccaaag acccaccgcc
    35941 gtttaaaacg gactcaatat aatccgagaa aaatataaag tgtcagtttg cgacgcgagc
    36001 ggcattttag gacatattgc accgtgttaa cagtgcctgt ttaacgtgtg cggcgcctgc
    36061 tataccagcg cctacaagcg actgtcgcgc caaagacaaa aagtggctgt taattcgacg
    36121 atttcttgcc tgcttgtaac aaaacaatac aaaggaaaag actcgttacg tcttaattag
    36181 t
//
LOCUS       DAJVSD010000012        36174 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.012, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000012 DAJVSD010000000
VERSION     DAJVSD010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 36174)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36174)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36174
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.012"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            137..1738
                     /locus_tag="OQP62_000488"
     CDS             137..1738
                     /locus_tag="OQP62_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HCS1720127.1"
                     /translation="MSQSTRRKVLRFLGTIIVVLLPVLLAIWFAHIRAVSETRNQLHS
                     FAQLVLDKTERVILQADLARDAAEQYQGQACTPAHQQRMLNIIRGRLYINELIYAKGQ
                     RFLCSTVMTPTSPYFIPRADYKRKPDIAIYYYRDTPFFNGYKMTYMQRGNYVAVINPL
                     SYSEVMSDDPALAWGMYDTVTNTFFSLSEQAQADQLLPLVQRSEPVFQQGERFYALVK
                     SAKRPVAAIVSTSKQRFYQNLFHQLTLTLPLGIICSIIVLFMWSRSRQAYYSPRRLLQ
                     RAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSPCEFIPLAEKEGMIEQI
                     TDYVVEEVFNDLGGFLAAHPHLYVSINLSAADFLSSRLIVMIHEKTRQHSVLAQQIKV
                     EVTERGFIDVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLYSLNVDLLKIDKSFVD
                     TLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGVQYCQGWHFAKALP
                     PQEFIVWLQQTPAPLTIRGQTPYRR"
     gene            complement(1726..2049)
                     /gene="soxS"
                     /locus_tag="OQP62_000489"
     CDS             complement(1726..2049)
                     /gene="soxS"
                     /locus_tag="OQP62_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide response transcriptional regulator
                     SoxS"
                     /protein_id="HCS1720128.1"
                     /translation="MSHQQIIQTLIEWIDEHINQPLNIDVVAKKSGYSKWYLQRMFRT
                     VTHQTLGEYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRREFDRTPSD
                     YRHRL"
     gene            2136..2594
                     /gene="soxR"
                     /locus_tag="OQP62_000490"
     CDS             2136..2594
                     /gene="soxR"
                     /locus_tag="OQP62_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensitive transcriptional activator SoxR"
                     /protein_id="HCS1720129.1"
                     /translation="MEKKSPRLKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSG
                     NQRRYKRDVLRYVAIIKIAQRIGIPLATIGDAFGILPEGHTLSAKEWKQLSSQWREEL
                     DRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEHGTGARLLEDD"
     gene            2887..3555
                     /locus_tag="OQP62_000491"
     CDS             2887..3555
                     /locus_tag="OQP62_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HCS1720130.1"
                     /translation="MLTVHHLNQSRSQRILWALEELALPYQIVRYQREKTMLAPPALK
                     KVHPLGKSPVIEDHGMVIAESGAILEYLQDTYDNIGRFKPADAQRKQHYRFWLHYAEG
                     SLMPLLLMRLLFTSLGKPPVPLGLRTLGGVIGKGAQKAYLNPQLETHARFIDEHLANH
                     PWFAGEQLSMADIQMSFPLFALLARGGIAHLDHINAWKARVEMRPAWQRAIQQGGPFT
                     IPGG"
     gene            3902..5251
                     /gene="ghxP"
                     /locus_tag="OQP62_000492"
                     /gene_synonym="yjcD"
     CDS             3902..5251
                     /gene="ghxP"
                     /locus_tag="OQP62_000492"
                     /gene_synonym="yjcD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanine/hypoxanthine transporter GhxP"
                     /protein_id="HCS1720131.1"
                     /translation="MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVI
                     VVPGMLGKAGFPPAAVFVATCLVAGVGSIVMGLWANLPLAIGCAISLTAFTAFSLVLG
                     QHISVPVALGAVFLMGVLFTIISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANG
                     VGLVIKNPLDGLPVALGDFDTFPVIMSLVGLAVILGLEKLKVPGGILLTIIGISIVGL
                     LFDPNVHFSGIFAMPSLSDENGNSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTI
                     RAVAGQANLLDRDGQIIDGGKALTTDSLSSVFSGLVGAAPAAVYIESAAGTAAGGKTG
                     LTAITVGVLFLLILFLSPLSYLVPVYATAPALMYVGLLMLSNVAKIDFADFVDAMAGL
                     VTAVFIVLTCNIVTGIMIGFATLVVGRLVSGEWRKLNIGTVVIAVALVAFYAGGWAI"
     gene            5401..7047
                     /locus_tag="OQP62_000493"
     CDS             5401..7047
                     /locus_tag="OQP62_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HCS1720132.1"
                     /translation="MEIFFTILIMTLVVSLSGVFTRVLPFQLPLPLMQIAIGALLAWP
                     TFGLHVEFDPELFLVLFIPPLLFADGWKTPTREFLEHGREIFGLALALVLVTVVGIGF
                     LIYWLVPGIPLIPAFALAAVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGL
                     VSLKFAVAVAMGTMVFTVGGATLEFFKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEP
                     ATQIVLLFLLPFASYLIAEHIGVSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWA
                     MLEFVFNGMVFLLLGLQLPGILESSLAAAEADPNVETWMLFTDIVLIYAALMLVRFGW
                     LWTMKKFSLRFLKKKPMEFASWTSREILIASFAGVRGAITLAGVLSIPLLLPDGSGFP
                     ARYELVFLAAGVILFSLFVGVIMLPLLLQHLEVADHAQQLKEERIARAATAEVAIVAI
                     QKMEERLAADTEENIDNQLLTEVSSRVIGNLRRRADGRNDVESSIQEENLERRFRLAA
                     LRSERAELYHLRATREISNETLQKLLHDLDLMEALLIENQ"
     gene            complement(7142..8029)
                     /locus_tag="OQP62_000494"
     CDS             complement(7142..8029)
                     /locus_tag="OQP62_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1720133.1"
                     /translation="MDIRTLRYFVEVVRQQSFTRAAEKLFVTQPTISKMLKNLEDELN
                     CTLLIRDGRKLLLTDTGRVVFERGLAILAEFRQLEAELSDINHLNKGVLRLGIPPMVG
                     MLMAGPISLFRQRYPGVELKISEFGGLTVQQAVMNGELDVAMTALPVEEASGLTTLSL
                     FSHPLCVLVPRSGQWTTCDSIAPEALAEHPLLIYNEDFALSRQLMTLFSQHDVKPRIA
                     VRSGQWDFLAAMVQAGVGIAILPEPICQRLDKATLRWLPLESDLRWQLGMIWREGVYL
                     SHSARAWLTCCEGFWLKQP"
     gene            8133..8543
                     /locus_tag="OQP62_000495"
     CDS             8133..8543
                     /locus_tag="OQP62_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HCS1720134.1"
                     /translation="MAVAISRVTPAVVQRLQVPVQVLLYAGLFIFSQYLVSWLHLPLP
                     ANLVGMVLMLALIVCRIIPLSWVRAGARWLLAEMLLFFVPAVVAVVNYAHLLLVDGWR
                     IFSVIAISTLMVLGATAWVVDKVYRYEMSRLNRE"
     gene            8536..9225
                     /locus_tag="OQP62_000496"
     CDS             8536..9225
                     /locus_tag="OQP62_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HCS1720135.1"
                     /translation="MNNVQLSVLCLVITLGIYFANKRLYRRFRKLPLMPLVLTPALLV
                     LMLVFGHISWQNYISESHWLLWLLGPATIAFAVPVYDNLAIIKRHWMSLTAGVVTATV
                     VAVTSSVWLARLFTLSDEIQRSLAVRSVTTPFALAAAEPLGGQPDLVALFVVVTGVFG
                     MAVGDALFLRLSIREGMAKGAGFGAASHGAGTARSYELGQQEGVVASLVMMLSGVVMV
                     LAAPLVARVMF"
     gene            complement(9264..10913)
                     /gene="actP"
                     /locus_tag="OQP62_000497"
     CDS             complement(9264..10913)
                     /gene="actP"
                     /locus_tag="OQP62_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation/acetate symporter ActP"
                     /protein_id="HCS1720136.1"
                     /translation="MKRVLTALAAALPFAAHAADAISGAVERQPTNWQAIIMFLIFVV
                     FTLGITYWASKRVRSRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYD
                     GLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQGPIRILSACGSLVVVAL
                     YLIAQMVGAGKLIELLFGLNYHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFG
                     ASFMAFMVMKHVGFSFNNLFTEAMAVHPKGTAIMSPGGLVQDPISALSLGLGLIFGTA
                     GLPHILMRFFTVSDAREARKSVFYATGFMGYFYILTFIIGFGAIMLVGANPAYKDAAG
                     ALIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVF
                     RKGATEREELKVSKITVLVLDVIAIILGVLFENQNIAFMVGLAFAIAASCNFPIILLS
                     MYWSKLTTRGAMLGGWLGLLTAVVLMILGPTIWVQILGHEKAIFPYEYPALFSISVAF
                     LGIWFFSATDNSAEGNREREQFRAQFIRSQTGFGVQQGRAH"
     gene            complement(10910..11224)
                     /locus_tag="OQP62_000498"
     CDS             complement(10910..11224)
                     /locus_tag="OQP62_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF485 domain-containing protein"
                     /protein_id="HCS1720137.1"
                     /translation="MNDQIYQRIEDSARFRELVEKRQRFATILSVIMLAVYISFILLI
                     AFAPGWLGTPLHAGTSVTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNAVLHEVK
                     AL"
     gene            complement(11463..13421)
                     /gene="acs"
                     /locus_tag="OQP62_000499"
     CDS             complement(11463..13421)
                     /gene="acs"
                     /locus_tag="OQP62_000499"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HCS1720138.1"
                     /translation="MSQTHKHAIPANIADRCLINPEQYETKYKQSINDPDTFWGEQGK
                     ILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDA
                     SQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS
                     VIFGGFSPEAIAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI
                     VLKRTGNDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLH
                     TTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVP
                     NWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINP
                     EAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD
                     NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDG
                     YYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLN
                     HGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTS
                     NLGDTSTLADPGVVEKLLEEKQAIAMPS"
     gene            13853..15289
                     /gene="nrfA"
                     /locus_tag="OQP62_000500"
     CDS             13853..15289
                     /gene="nrfA"
                     /locus_tag="OQP62_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming nitrite reductase cytochrome
                     c552 subunit"
                     /protein_id="HCS1720139.1"
                     /translation="MARKTLRARRFFSLIFPFFFITSVYAEQTPVSAKTVTVEAKNET
                     FAPQHPDQYQSWKATSEQSAREDALAEDPRLVILWAGYPFSRDYNKPRGHAYAVTDVR
                     ETLRTGAPKTAEDGPLPMACWSCKSPDVARLIQQEGEDGYFHGKWARGGPEIVNDLGC
                     ADCHNTASDDFAQGKPAITLSRPYAERAMEAIGKPFDKAGRFDQQSMVCGQCHVEYYF
                     DGKNKAVKFPWDEGMKVENMEQYYDAIAFSDWTNSLSKTPMLKAQHPEYETWSAGIHG
                     KNNVTCIDCHMPKVQNAEGKLYTDHKIGNPFDNFAQTCANCHTQDKASLQKVVAERKQ
                     AIHDLKIKVEDQLVHAHFEAKAAWDAGATDAEMKPILNDIRHAQWRWDLAIASHGIHM
                     HAPEEGLRMLGSAMDKAADARTKLARLLATKGITHEIPLPDISTKEKAQKAIGLNMQQ
                     INAEKQDFLKTVVPQWEDQARKNGLLSQ"
     gene            15401..15967
                     /gene="nrfB"
                     /locus_tag="OQP62_000501"
     CDS             15401..15967
                     /gene="nrfB"
                     /locus_tag="OQP62_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418495.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase pentaheme
                     subunit"
                     /protein_id="HCS1720140.1"
                     /translation="MSVLRSLLTAGVLASGLFWSLSGITATPTPQESDQRWTVTQQRN
                     PDAACLDCHKPDTEGMHGKHTGAINPNNKLPITCTNCHGQPSLHHREGVKDVMRFNDP
                     MYTVEQQNSVCMSCHLPEQLQKAFWPHDVHVTKVTCASCHSLHPQQDTMQTLNEKGRI
                     KICVDCHSDQRTNPHFNPASVPLLKEQP"
     gene            15964..16635
                     /gene="nrfC"
                     /locus_tag="OQP62_000502"
     CDS             15964..16635
                     /gene="nrfC"
                     /locus_tag="OQP62_000502"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase Fe-S protein"
                     /protein_id="HCS1720141.1"
                     /translation="MSCTRRQFITRVGALAAVSGMAGRVVANTLNINGVRYGMVHDES
                     LCIGCTACMDACREVNNVPEGVSRLTIIRSEPQGTFPDVKYRFFRHSCQHCDHAPCVD
                     VCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVSKTADKCDFCRKTNL
                     KAGKQPACVESCLTKALTFGNLDDPNSDISRLLRQKTTYRYKLALGTKPKVYRVPFNY
                     GEVSQ"
     gene            16632..17588
                     /gene="nrfD"
                     /locus_tag="OQP62_000503"
     CDS             16632..17588
                     /gene="nrfD"
                     /locus_tag="OQP62_000503"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase subunit NrfD"
                     /protein_id="HCS1720142.1"
                     /translation="MTSASAFHFASLVWDWPIAIYLFLIGISAGLVTLAILLRRFHPE
                     AGGSDSTLLRTTLVLGPGAIILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQ
                     LYMVVLILWLAKIFEKEVIALQQRWLPRLEIVQKVLTLIAPFHRALETLMLVLAVLLG
                     AYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMALRHRSNPHSTEARFVH
                     RMEVPVVWLEIFLLAAFFVGLALGDDGKMRALAAALGGGFWSWWFWLGVVGLGLIIPM
                     LLKPWANRSVTFHGVLAVCGASLTGVLLLRFFILYAGQLTVA"
     gene            17581..19317
                     /locus_tag="OQP62_000504"
     CDS             17581..19317
                     /locus_tag="OQP62_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016507453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HCS1720143.1"
                     /translation="MHNLDIFLPEAGFLALLLSLGVNVLTPLATWCGMAQHWRGVMRL
                     TTCGAWTAFTLLLLAFAILFSCFLTSDFSVVYVAQHSHSQLSWGLKLAAVWGGHEGSL
                     LLWALLLSGWTVLFAWRSRHESDALFPLTLSILSLIMASLLLFIVLWSDPFLRIFPPA
                     MEGRDLNPMLQHLGLILHPPLLYLGYGGLMTAASVALASLLCGGFNAATAWVCWRWAL
                     LGWCALTLGIILGSWWAYCELGWGGWWFWDPVENASLLPWLAASALLHSLYVSRQRGS
                     FRHWSLLLAILTLILSLLGTLIVRSGILLSVHAFALDNVRAVPLFILFAALSLASLAL
                     YGWRAREPYPATRLGGGKCETLILATLLLFSAVLLIVLVGTLYPMIYGLMGWGRLSVG
                     APYFNRVTLPFGLLMLVVIVLATIRSRKVSVHRQLPALLAHTGVFIFAAGIMVSSGSR
                     HEISLNLSPGQQVVLAGYTFRFERLDLEAKGNYTSEKARITLWRNEKRIGSLQPERRF
                     YAARRQQMMEPGIHWNLLHDWYAVMGEKTGADRYAMRLYVQTGVRWIWGGGLLMVCGA
                     LLSGWRGRKRDA"
     gene            19310..19819
                     /gene="nrfF"
                     /locus_tag="OQP62_000505"
     CDS             19310..19819
                     /gene="nrfF"
                     /locus_tag="OQP62_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012134579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfF"
                     /protein_id="HCS1720144.1"
                     /translation="MRKLLTALPDGGVSALSGLQDAQTVGRISVAPSGRKFLLLTIVL
                     FLITFATHAQVVDTWRFDNPQQQEKALSIAGQLRCPQCQNQNLLESNAPVAVSMRHQV
                     YSMVAEGKSEAEITAWMTDRYGDFVRYNPPLNEQTLLLWALPCLLLLLVGVVVWRVRK
                     RQHAEEGEQ"
     gene            19816..20436
                     /gene="nrfG"
                     /locus_tag="OQP62_000506"
     CDS             19816..20436
                     /gene="nrfG"
                     /locus_tag="OQP62_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfG"
                     /protein_id="HCS1720145.1"
                     /translation="MSQSEHSTVPLRPMPVKRLTAAAVLMVAVCIGGYMLTPKWQAVR
                     SEQQRLADPLRDFTNPQTPEAQLSRLQEKIRANPQDSEQWARLGEYYLYRNAYDNALL
                     AYRQALRLRGDNAQLFAALATVLYYQSGQHMTPATREMINKALALDATEVTAQMLLAA
                     DAFMQADYAQAVSLWQTLLDANSPRVNRAQLVEAINLAKLLQNRQK"
     gene            20781..22091
                     /gene="gltP"
                     /locus_tag="OQP62_000507"
     CDS             20781..22091
                     /gene="gltP"
                     /locus_tag="OQP62_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate:proton symporter GltP"
                     /protein_id="HCS1720146.1"
                     /translation="MKNLKVSLAWQILLAMVLGILLGSYLHYHSDSREWLIANLLSPA
                     GDIFIHLIKMIVVPIVISTLIVGIAGVGDAKQLGRIGAKTILYFELITTVAIILGITL
                     ANVFQPGSGIDMSQLATVDISKYQNTTAEVQSHAHGLMGTILSLVPTNIIASMAKGDM
                     LPIIFFSVLFGLGLSSLPATHREPLVTVFRSISETMFKVTHMVMRYAPVGVFVLIAVT
                     VANFGFASLWPLAKLVLLVHFAIIFFALVVLGIVARLCGLSIWILIRILKDELILAYS
                     TASSESVLPRIIEKMEAYGAPASITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGID
                     LSLWQEIVLVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMA
                     RTALNVVGNALAVLVIAKWEHKFDRKKALAYERDVLGKFDKTAQ"
     gene            complement(22249..22938)
                     /locus_tag="OQP62_000508"
     CDS             complement(22249..22938)
                     /locus_tag="OQP62_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HCS1720147.1"
                     /translation="MKPLIALMLFMTFFAHAADPEPGSQYLQAAEAGDRRAQYFLADS
                     WLSYGDLNKAEYWAQKAADNGDADACALLAQIKITNPVSLDYPDAKKLAEKAANAGSK
                     AGEITLARILVNTQAGRPDYPKAISLLQKASEDLDNDSAVDAQMLLGLIYANGVGIAA
                     DDEKAAWYFKRSSAISRTGYSEYWAGMMFLNGEPGFIEKNKQKALHWLNLSCLEGFDT
                     GCEEFETLTNG"
     gene            complement(23115..25262)
                     /gene="fdhF"
                     /locus_tag="OQP62_000509"
     CDS             complement(23115..25262)
                     /gene="fdhF"
                     /locus_tag="OQP62_000509"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(24843..24845),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HCS1720148.1"
                     /translation="MKKVVTVCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLK
                     GYYGWDFINDTQILTPRLKTPMIRRQRGGKLESVSWDEALNYVAERLSAIKAKYGPDA
                     IQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVUHGPSVAGLHQSVGNGAMSNA
                     INEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIAL
                     KNGSNIALLNAMGHVIIEENLYDKAFVASRTEGFEEYSKIVEGYTPESVEEITGVSAQ
                     EIRQAARMYASAKSAAILWGMGVTQFYQGVETVRSLTSLAMLTGNLGKPSAGVNPVRG
                     QNNVQGACDMGALPDTYPGYQYVKFPENREKFAKAWGVESLPAHTGYRISELPHRAAH
                     GEVRAAYIMGEDPLQTDAELSAVRKAFEDLELVIVQGIFMTKTASAADVILPSTSWGE
                     HEGVFSAADRGFQRFFKAVEPKWDLKTDWQIISEIATRMGYPMHYNNTQEIWDELRHL
                     CPDFYGATYEKMGELGYIQWPCRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWVAPI
                     DKLTEEYPMVLSTVREVGHYSCRSMTGNCAALAALADEPGYAQINTADAARLGIEDEA
                     LVWVHSRKGKIITRAQVSDRPNKGAIYMTYQWWIGACNELVTENLSSITKTPEYKYCA
                     VRVEPIADQRAAEQYVIDEYNKLKTRLRESAMG"
     gene            complement(25601..26509)
                     /gene="lpxO"
                     /locus_tag="OQP62_000510"
     CDS             complement(25601..26509)
                     /gene="lpxO"
                     /locus_tag="OQP62_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A hydroxylase LpxO"
                     /protein_id="HCS1720149.1"
                     /translation="MFAAIIIGIFIISVIYAHSRGVEKQKLSRQLFDHSTFMAPINMF
                     MTRFSTLPAKQPYFDTTAFPELQKLTENWQVIREEALRLQHHIKAAQANNDAGFNTFF
                     KRGWKRFYLKWYSDAHPSAETLCPITTKLVNSIPSIKAAMFAELPPGAYLGKHRDPYA
                     GSVRYHLGLSTPNDDRCFIEVDRQRHSWRDGEAVIFDETYVHWAENKTEQTRIILFCD
                     IERPMKWRWAQSVNHWVGASLMSAASSPNDENDRTGAINRIFKYVHAARDAGQRLKKK
                     NRTLYYALKYLVIAAIFAAIILFSLL"
     gene            complement(26767..27201)
                     /gene="phnO"
                     /locus_tag="OQP62_000511"
     CDS             complement(26767..27201)
                     /gene="phnO"
                     /locus_tag="OQP62_000511"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoalkylphosphonate N-acetyltransferase"
                     /protein_id="HCS1720150.1"
                     /translation="MPVCELRHATTEDTDSVYALICELLKNELDYQAFRDGFAANLLD
                     PNLHYRLALRNGEVVGMISLHMQFHLHHANWIGEIQELVVLPQMRGQKVGSQLLAWAE
                     EEARQAGAELTELSTNIKRRDAHRFYLREGYKQSHFRFTKAL"
     gene            complement(27353..27796)
                     /gene="yjdN"
                     /locus_tag="OQP62_000512"
     CDS             complement(27353..27796)
                     /gene="yjdN"
                     /locus_tag="OQP62_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family metalloprotein YjdN"
                     /protein_id="HCS1720151.1"
                     /translation="MPLSPYLSFAGNCADAIAYYQQTLGAELLYKLSFGEMPPSAADN
                     EEGCPSGMRFPDTAIAHANMRIAGSDIMMSDASASGTAHYSGFTLVLDTQDVAEGKRW
                     FDNLAAQGQIEMDWQETFWAQGFGKVSDRFGVPWMINVVKHQPAT"
     gene            complement(27916..28251)
                     /locus_tag="OQP62_000513"
     CDS             complement(27916..28251)
                     /locus_tag="OQP62_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phnA family protein"
                     /protein_id="HCS1720152.1"
                     /translation="MSLPHCPQCNSEYTYEDNGMFICPECAHEWNDAEPAQESDELIV
                     KDANGNLLADGDSVTIVKDLKVKGSSSMLKIGTKVKNIRLVEGDHNIDCKIDGFGPMK
                     LKSEFVKKN"
     gene            28719..30221
                     /gene="proP"
                     /locus_tag="OQP62_000514"
     CDS             28719..30221
                     /gene="proP"
                     /locus_tag="OQP62_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline transporter ProP"
                     /protein_id="HCS1720153.1"
                     /translation="MLKRKKIKPITLGDVTIIDDGKLRKAITAASLGNAMEWFDFGVY
                     GFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAIT
                     IVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK
                     RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEENFLEWGWRIPFFIALPLGIIGLYLR
                     HALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLSCIGLVIATNVTYY
                     MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVIMGSIA
                     LFALAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAA
                     FNISVLIAGLTPTLAAWLVESSQDLMIPAYYLMVIAVIGLITGISMKETANRPLKGAT
                     PAASDIQEAKEILGEHYDNIEQKIDDIDQEIAELQVKRSRLVQQHPRIDE"
     gene            30291..30380
                     /gene="pmrR"
                     /locus_tag="OQP62_000515"
     CDS             30291..30380
                     /gene="pmrR"
                     /locus_tag="OQP62_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000844399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LpxT activity modulator PmrR"
                     /protein_id="HCS1720154.1"
                     /translation="MKSYIYKSLTTLCSVLIVSSFIYVWVTTY"
     gene            complement(30388..31458)
                     /gene="pmrB"
                     /locus_tag="OQP62_000516"
     CDS             complement(30388..31458)
                     /gene="pmrB"
                     /locus_tag="OQP62_000516"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     PmrB"
                     /protein_id="HCS1720155.1"
                     /translation="MRFQRRAMTLRQRLTLTIGLILLVFQLISTFWLWHESTEQIQLF
                     EQALRDNRNNDRHIMHEIREAVASLIVPSVFMVSLTLLVCYQAVRRITRPLAELQKEL
                     EARTADNLTPIAIHSSTLEIESVVSAINQLVTRLTTTLDNERLFTADVAHELRTPLSG
                     VRLHLELLSKTHNVDVAPLIARLDQMMDSVSQLLQLARVGQSFSSGNYQEVKLLEDVI
                     LPSYDELNTMLETRQQTLLLPESAADVVVRGDATLLRMLLRNLVENAHRYSPEGTHIT
                     IHISADPDAIMAVEDEGPGIDESKCGKLSEAFVRMDSRYGGIGLGLSIVSRITQLHQG
                     QFFLQNRTERTGTRAWVLLKKA"
     gene            complement(31468..32136)
                     /gene="pmrA"
                     /locus_tag="OQP62_000517"
     CDS             complement(31468..32136)
                     /gene="pmrA"
                     /locus_tag="OQP62_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator PmrA"
                     /protein_id="HCS1720156.1"
                     /translation="MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGH
                     YSLMVLDLGLPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRISGLDVGADDYLVKP
                     FALEELHARIRALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSR
                     LMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKSRIRTVRRFGYMLVA
                     TEES"
     gene            complement(32133..33776)
                     /gene="eptA"
                     /locus_tag="OQP62_000518"
     CDS             complement(32133..33776)
                     /gene="eptA"
                     /locus_tag="OQP62_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase EptA"
                     /protein_id="HCS1720157.1"
                     /translation="MLKRFLKRPVLGQIAWLLLFSFYIAVCLNIAFYKQVLQDLPLNS
                     LRNVLVFISMPVVAFSVVNSVLTLASFIWLNRLLACIFILVGAAAQYFILTYGIIIDR
                     SMIANMMDTTPAETFALMTPQMVLTLGLSGVLAAVIAFWVKIRPATPRLRSGLYRLAS
                     VLISILLVILVAAFFYKDYASLFRNNKQLIKALSPSNSIVASWSWYSHQRLANLPLVR
                     IGEDAHRNPLMLKGDRKNLTILIVGETSRGDDFSLGGYPRDTNPRLAKDDVIYFPHTT
                     SCGTATAISVPCMFSDMPRKHYDEELAHHQEGLLDIIQRAGINVLWNDNDGGCKGACD
                     RVPHQNVTELNLPGQCIDGECYDEVLFHGLEDYIDHLKGDGVIVLHTIGSHGPTYYNR
                     YPPQFKKFTPTCDTNEIQNCSQQQLINTYDNTVLYVDYIVDKAINLLKSHQDKFTTSL
                     VYLSDHGESLGENGVYLHGLPYSIAPDTQKHVPMLIWLSKDYQQRYQVDQACLQKRAS
                     TLDYSQDNLFSTMLGLTGVQTTYYQAADDILQPCRRLSE"
     gene            complement(33910..35247)
                     /gene="adiC"
                     /locus_tag="OQP62_000519"
     CDS             complement(33910..35247)
                     /gene="adiC"
                     /locus_tag="OQP62_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine/agmatine antiporter"
                     /protein_id="HCS1720158.1"
                     /translation="MSSDADAHKVGLIPVTLMVSGNIMGSGVFLLPANLAATGGIAIY
                     GWLVTIIGALALSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNI
                     AMVVIGVGYLSYFFPILKDPLVLTLTCVAVLWIFVLLNIVGPKMITRVQAVATVLALV
                     PIVGIAVFGWFWFKGETYMAAWNVSGMNTFGAIQSTLNVTLWSFIGVESASVAAGVVK
                     NPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGA
                     IVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLLIVGVLM
                     TIFQFSSMSPNAAKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPLYLLITF
                     VAFVYCIWAVIGSGAKEVMWSFVTLMVITALYALNYNRIHKNPYPLDAPVKQD"
     gene            complement(35387..36148)
                     /locus_tag="OQP62_000520"
     CDS             complement(35387..36148)
                     /locus_tag="OQP62_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HCS1720159.1"
                     /translation="MRICSNEPCIVLLTEKDTWLRVNGKEPISLKANHMAILACENNV
                     IDISSLNSVLVIQVSRNNIKDYLQFLNKDLSHLPVWQRNADPLLTATCLTPDIFRVAA
                     RYSAMETPDEIVSERTRALLFTVLSRFLDHKKFISLLMHMLRSRISDSVYHIIQSDIH
                     KDWNLSAVASCLCLSPSLLKKKLKNENTSYSQIITTCRMRYAVNQLLMDGKNISQVSQ
                     LCGYNSTSYFISVFKEFYGMTPLHYVSQHRERSAA"
BASE COUNT         8047 a         9373 c         9927 g         8827 t
ORIGIN      
        1 tagttattaa tggtaaatgt tgatcggtaa aagtctgttg ctaatattga taaattcatg
       61 caccgtaaac ctccgtttgg ttcacgtctt attttgccaa taatagtcac aaataatgca
      121 gggaaatagg ctgaaaatga gtcaaagcac acgacgcaag gtgttgagat ttctcggaac
      181 gatcattgtg gtattacttc ctgtattgct ggcgatctgg tttgctcata tccgggcagt
      241 ctctgaaacc agaaatcagt tacattcatt tgcgcagttg gtattagata aaacggagcg
      301 ggttatcctg caagcagatt tagcccgcga tgccgctgaa caatatcagg ggcaagcctg
      361 tacgccagcc catcaacagc gaatgctgaa tattatccgc ggtcgtttgt acattaatga
      421 gttgatttat gctaagggcc agcgttttct atgctctacg gttatgacgc caacaagtcc
      481 ttattttatt ccccgcgctg actataaacg aaagcctgac atcgctattt attactatcg
      541 tgatacgcct tttttcaacg gttataaaat gacatatatg cagcggggaa actatgtcgc
      601 ggttatcaat cccttatctt atagcgaggt gatgtcagac gatccggcgt tggcctgggg
      661 aatgtatgat acggtgacca acaccttttt ctccctgagt gaacaggcgc aggctgatca
      721 gctattacct ttggtacaac ggagtgaacc tgtgttccaa cagggtgagc gtttctatgc
      781 tctggttaaa tcagcaaaac gaccggttgc cgcgattgtt tcaacctcaa agcaacgctt
      841 ttaccagaac ctctttcatc agcttacgtt aacgctaccg ttagggatca tctgtagcat
      901 tatcgtctta tttatgtggt cacgatcccg gcaggcatat tactcaccgc gtcgattgct
      961 gcaacgggcc attaccaggc accagctttg ccttcattat cagccgatca ttgatatccg
     1021 aaacgggaca tgtgtaggtg ccgaagcgct attgcgttgg ccgggttatc acggtccggt
     1081 gatgagcccg tgcgaattta ttcctctggc ggaaaaagag gggatgattg agcagatcac
     1141 cgattatgtc gtcgaagagg tatttaatga tttaggtggt tttctggccg cgcacccgca
     1201 tctttatgtc tctatcaatc tctctgccgc cgattttctc tcttcccgac taattgtgat
     1261 gattcatgaa aaaacgcgtc agcattcagt gcttgcgcaa cagataaagg ttgaagtgac
     1321 cgagcgcgga tttattgatg tgccgaaaat gacgccgatt attcaggcgt ttcgccaggc
     1381 gggatacgag gtagcaattg atgactttgg taccggctat tcgaacttgc ataacctgta
     1441 ctcattaaat gtcgaccttt taaaaattga taaatctttt gtcgatacgc taaccactaa
     1501 tagcgccagc catttgattg tggaacatat tattgaaatg gcgcaaagtt tgcggctaaa
     1561 aatcattgct gagggggttg aaacggctga acaggttagc tggttgctaa aacgcggcgt
     1621 gcagtattgt cagggatggc actttgcgaa ggcgttaccg ccgcaggaat tcatcgtctg
     1681 gctacaacaa acgcccgcgc ctctgacgat acgcgggcag acgccctaca ggcggtgacg
     1741 gtaatcgctg ggagtgcgat cgaactcgcg gcggaataca cgcgagaagg tttgctgcga
     1801 tacatagccc aggtccatcg cgatatcaaa aatcgggcgc tcggtcgttc gtagctcaac
     1861 ggccgctaac aggagacggc gctggcgaat atactcgcct aatgtttgat gcgttaccgt
     1921 acgaaacatc cgctgcaaat accacttgga gtaacccgat ttttttgcca ccacatcaat
     1981 gtttagcggt tggttgatat gttcatcaat ccattcgata agggtctgaa ttatctgctg
     2041 atgcgacata ttgttgcctc ttaaacagta ttcgattcgt cgttttgtct gcgggcgagt
     2101 ataattcctc aagttaactt gaggtaaagc gatttatgga aaaaaaatct ccccgtttaa
     2161 aagccttact gacgccgggg gaagttgcga aacgtagcgg tgttgctgtg tccgccctgc
     2221 acttctatga aagcaaaggg ctaattacca gtatccgtaa tagcggtaac caacggcgat
     2281 acaagcgtga cgtgttgcgt tatgtcgcga ttatcaagat tgcccagcgt atcggcatcc
     2341 cgctggcaac tatcggcgac gcgtttggta tcttgccgga agggcatacg ttaagcgcga
     2401 aagagtggaa gcagctctcc tcgcagtggc gcgaagagtt agaccgacgt attcatacgc
     2461 tggtggcgtt gcgcgatgag ctggacggtt gtatcggctg cggctgttta tcgcgtagcg
     2521 actgtccgct gcggaatcca ggcgacaggc ttggcgaaca cgggacgggc gcccggctgc
     2581 ttgaagatga ttaacatgca ctcggccatc gggctgagct cacctaaaac taaagcgccg
     2641 ctaagggcgc tttagtttgt ttccggtctt tgtctttcgc tctatcccgc tgattacagg
     2701 agggtttccc ccgacgtcaa cacctctcat attgagcacg tggtggaggt tccggtttgt
     2761 gttgatactg taagtgtaag cgacgacgcc ctgttcgcca gcgaaatgct gattttttag
     2821 ccgaaatttt tacggcaact gccataattt tctatagtta gttggcatac cttacaggag
     2881 acagccatgc tgacggtgca ccatttaaat cagtctcgtt cgcagcgcat cctctgggcg
     2941 ctggaagagc tggcgttgcc ttaccagatt gtgcgttacc agcgtgaaaa gaccatgctg
     3001 gcgccgccgg cattgaaaaa agtgcatccg ctgggcaagt ctccggttat cgaagatcac
     3061 ggtatggtta ttgcggaatc gggcgccatc ctggaatatt tgcaggacac ttacgacaat
     3121 atcggacgct ttaagcctgc ggatgcgcag agaaaacaac actatcgatt ctggctacat
     3181 tacgctgaag gttcgctcat gcccttgcta ttgatgagac tgctctttac ctctctgggt
     3241 aaaccgccgg taccattggg cctgcgaacg ttgggcggcg tgatcggtaa gggcgcgcaa
     3301 aaagcgtacc tcaatccgca actggaaacc catgcgcgct ttattgacga gcatctggca
     3361 aatcacccct ggtttgccgg agagcagtta agtatggcgg atatccagat gagcttcccg
     3421 ctatttgcgc tgcttgcccg aggcggaatc gctcatctcg accatatcaa cgcatggaaa
     3481 gcgcgggtag aaatgcgtcc agcctggcag cgagcgattc agcagggcgg tccgtttacc
     3541 attcccggcg gataatggcg tttttgtgag cagattgcgc aacgtatttg ctaacagcga
     3601 tgcgaaaaat tgttgctgga ttgcgcaggg acgataacgt ttgcgcatcg tctggctatt
     3661 tattgagcat actaagcaga aaagcataaa aagcggcaaa gttcagttga aaaagcgttg
     3721 atgatcgctg gataatcgtt tgcttttttt tgccacccgt tttgtatacg tggagctaaa
     3781 cgtttgcttt tttgcggcgc cccggctgtc gtaaatgtag cacaaggaga taacgttgcg
     3841 ctgttagtgg attacctccc acgtataccg acgaataata aattctcagg ggatgttttc
     3901 tatgtctacg ccttcagcgc gtaccggcgg ttcactcgac gcctggttta aaatttcaca
     3961 acgcgggagc accgttcgcc aggaagtcgt tgctggctta accacgtttc tcgcgatggt
     4021 ttactccgtc atcgtggtgc cagggatgct gggtaaagcc gggttcccgc ctgccgccgt
     4081 ctttgtagcg acctgcctgg tcgcaggcgt cggctctatt gttatggggc tatgggcgaa
     4141 tctgccgctg gctatcggtt gcgctatctc gttgacggcg tttaccgcgt ttagcctggt
     4201 cctggggcag catattagcg tcccggtcgc gcttggcgcc gtattcctga tgggcgtact
     4261 gtttaccatt atctccgcta ccggcattcg tagctggatt ttgcgtaact tgccgcaggg
     4321 cgtggcccac ggaaccggta tcggtattgg cctgtttttg ttgctgattg ccgccaacgg
     4381 cgtcggcctg gtcattaaaa acccgctgga tggcctgccg gtcgcgctgg gcgatttcga
     4441 taccttcccg gtgattatgt cgcttgtggg tctggctgtt attctcggtc tggaaaagct
     4501 gaaagtcccc ggcggcattc tgttgaccat tattggcatt tctattgtgg gtttgctctt
     4561 cgatcctaac gtccattttt ccggcatttt cgccatgcct tcgttgagcg atgaaaacgg
     4621 caactcgctg atcggcagcc tggatattat gggcgcgtta aaccctgtcg ttctgccaag
     4681 cgtgctggcg ctggtgatga cggcggtgtt tgatgcgacc ggcacgattc gtgcggtcgc
     4741 agggcaggct aatctgctgg acagagacgg acaaattatc gatggcggca aagcgctaac
     4801 caccgactca ctgagtagcg ttttctccgg cctggtcggg gcggcgccag ccgcggtgta
     4861 tatcgagtct gcggccggta cggcggcggg tggtaaaacg ggcctgacgg cgattaccgt
     4921 gggcgtgctg tttttgctga tcttgtttct ttcgccgctc tcttatctcg ttcccgtcta
     4981 cgcaaccgcc ccggcgctca tgtatgtcgg tctgctgatg ctgagtaacg tggcgaaaat
     5041 cgattttgct gatttcgtcg atgcgatggc ggggctggta acggctgtat ttattgtact
     5101 gacctgtaac atcgtcaccg ggattatgat cggctttgcc acgctggtcg tcgggcgtct
     5161 ggtttctggt gaatggcgta agctgaatat cggaactgtc gtcattgcgg tcgcgctggt
     5221 cgctttttat gccggcggct gggctatcta gttctgcctt cattctgaaa aatgggcggc
     5281 gttggtcgcc cgttttcatt ttcaggacac atcacgttac cttttgcgtt aatctgaaga
     5341 aggtgaaacc gaggcatgat gcctttctcc atcataaaaa acatcgcaaa cagggaacgc
     5401 atggaaattt tcttcacaat actcatcatg acccttgtgg tctcgctgtc gggggtattt
     5461 acgcgtgtat tacccttcca gcttccttta ccccttatgc agatcgccat tggcgcgctg
     5521 ttggcgtggc cgacgtttgg tttgcatgtg gaattcgacc cggaactctt cctggtgctg
     5581 tttattccgc cgctgctgtt tgcggatggc tggaaaacgc cgacccgtga atttcttgag
     5641 catggacgag agattttcgg gctggcgctg gcgctggtcc tggtaacggt tgtgggaatc
     5701 ggcttcctga tttattggct ggtgcccggc attccgctga tccccgcatt tgcgctggcc
     5761 gccgtgctgt cgccgaccga tgcggtagcg ctctccggaa ttgtgggcga ggggcgtatc
     5821 ccgaaaaaaa tcatgggcat tctgcaggga gaggcgttaa tgaacgacgc ctccggtctg
     5881 gtatcgctga aattcgccgt cgcggtggcg atggggacga tggtctttac cgtcggcggc
     5941 gcgacgctgg aattttttaa ggtcgctatc ggcggtattc tggcgggttt tgtagtcagt
     6001 tggctgtatg gccgctcgct gcgttttttg agccgctggg gcggcgatga gcccgcgacg
     6061 caaatcgtcc tgctgtttct gctgcccttc gcgtcttacc tgattgccga acatattggc
     6121 gtctcaggca tcctggccgc ggttgccgcc gggatgacca tcacccgttc tggcgtaatg
     6181 cgccgcgcgc cgctggcaat gcgtttgcgc gcgaacagta cctgggcgat gctggaattt
     6241 gtctttaacg gtatggtctt tctgctgttg ggactgcaat tgccagggat tctggaatct
     6301 tcgctggcgg cggcggaagc tgacccgaat gtcgaaacct ggatgctctt taccgatatc
     6361 gtgctgattt atgcggcatt gatgctggtt cgcttcggct ggctgtggac catgaaaaag
     6421 ttcagcctgc gctttttgaa gaagaaaccg atggagttcg ccagctggac gtcgcgtgaa
     6481 attctgattg cttccttcgc tggcgttcgt ggggcgatca ccctggctgg tgtgctctct
     6541 ataccgttac ttttgccgga tggcagcgga tttccggcgc gttatgaact ggtattcctg
     6601 gcggctggcg tcattctgtt ctcgttgttt gtcggcgtga tcatgctgcc gctgctgttg
     6661 caacatctgg aagtcgccga tcatgcgcaa cagttgaaag aggagcgtat cgcccgcgcg
     6721 gcgacggcgg aagtggcgat tgttgccatt cagaaaatgg aagagcgtct ggcggcggat
     6781 accgaagaaa acatcgataa tcagttgctt actgaagtaa gctcgcgtgt cattggtaac
     6841 ttgcgtcgcc gtgccgatgg gcgaaacgat gtcgaaagct ccatacagga agaaaacctg
     6901 gagcgacgtt tccgtctggc ggcgctgcgt tccgaacgcg ccgagttgta tcatctgcgc
     6961 gccacgcgag aaatcagcaa tgaaacattg caaaagctgc tgcacgacct ggatttgatg
     7021 gaagctctac tgatagaaaa tcagtagtcc ttgtggcccg gtggcgccat gcttatcggg
     7081 cctacaagta ggcccggtaa ggtgcttgcg ccgccatccg gcaagggttt taacccatgg
     7141 cttacggttg tttcagccaa aacccttcgc aacaggttaa ccatgcccgg gcgctgtgcg
     7201 acagatacac gccctcgcgc caaatcatgc ccaactgcca gcggagatca ctttccagcg
     7261 gtagccagcg cagcgtggcc ttatccagac gctgacaaat cggctccggc aaaatggcga
     7321 tgccgacgcc cgcttgcacc atggcggcga gaaaatccca ttgcccgctg cgcacggcaa
     7381 tccgtggttt tacgtcatgc tggctaaata aggtcatcaa ctggcggctc agggcaaagt
     7441 cttcgttata gataagaaga ggatgctccg ccagagcttc aggcgcgatg gagtcgcagg
     7501 ttgtccactg accggaacgg ggaaccagca cgcacagcgg atggctgaac agcgataatg
     7561 tcgtcagccc gctcgcttct tccaccggga gcgcggtcat cgcaacatcc agctcgccat
     7621 tcattaccgc ctgctgtacc gtcaggccgc caaactccga aattttgagt tcaacgccag
     7681 ggtagcgttg tcgaaacaaa ctgattggcc cagccatcaa catgccgacc atcgggggaa
     7741 tacccagccg cagcacgccc ttattgagat ggttaatatc gctcaactcg gcctctaact
     7801 ggcgaaactc agcgaggatc gccagaccgc gttcaaacac cacgcgtccg gtatcggtca
     7861 gcaataactt acgtccgtcg cggatcagta gcgtacagtt aagctcatct tcaagatttt
     7921 tcagcatctt gctaatggtg ggctgggtga caaataactt ctccgctgcg cgggtgaaac
     7981 tttgctggcg caccacctcg acaaaataac gcagcgttct gatatccatg attattcctt
     8041 ccgactatgc ctgcaatgat tttaattcat ttctgcccgt gacggaggtt ctctatactg
     8101 gcgctccgta ttatttttca ggacattccc tcatggctgt ggcgataagc cgcgttacgc
     8161 ctgccgttgt gcaacgactc caggtaccgg ttcaggtact gctctatgca ggtttattca
     8221 ttttttccca atatcttgtc tcctggctgc acctgccgtt gcccgcgaat ctggtcggca
     8281 tggtacttat gttggcgctg atcgtttgcc ggattattcc gcttagctgg gtacgcgcag
     8341 gcgcacgctg gctgctggcg gagatgctgt tattctttgt tcccgccgtc gtggcggtag
     8401 tgaactatgc ccatctgtta ctggtggacg gctggcgcat tttctcggtg atagcgatca
     8461 gtaccttaat ggtactcggc gcgacggcgt gggtggtgga taaagtgtat cgctatgaga
     8521 tgagcaggct aaaccgtgaa taacgttcag ttaagcgtac tgtgcctagt gattacgctg
     8581 ggaatttact tcgccaataa gcgtctgtat cgccgttttc gcaaattgcc gttgatgcca
     8641 ttagtgttga cgccggcact gctggtgtta atgctggtgt tcggtcatat ctcctggcaa
     8701 aactatatta gcgaatcgca ctggctattg tggctgctcg gcccggcgac cattgccttt
     8761 gcggtgccgg tgtacgataa cctcgcgatt atcaaacgtc actggatgtc gctcaccgcg
     8821 ggtgtagtga cggcgacggt ggtggcggtc accagttccg tttggctggc gcgtctgttc
     8881 acgttatcgg atgagattca gcgtagtctg gcggtacgtt ccgttactac gccgtttgcg
     8941 ctggcggcgg cagaacccct gggcgggcag ccggatctgg tggcgctgtt cgtggtcgtc
     9001 actggcgtgt ttggcatggc ggtcggcgac gcgctatttt tgcgtctctc tatccgggaa
     9061 ggcatggcaa aaggggcagg attcggcgcg gcgtcacatg gggcaggcac ggcgcgttcc
     9121 tatgaacttg gtcagcagga gggcgtcgtc gccagtctgg taatgatgct gtccggcgtg
     9181 gtgatggtgc tggcagcccc gctggtggcg agggtgatgt tctgattttc ctccgaccca
     9241 cagggccgga ggaaacggta agattaatgc gcacgccctt gttgtacgcc gaatcccgtt
     9301 tgggagcgga taaactgagc gcggaactgc tcacgttcac ggttgccttc tgccgagtta
     9361 tcggtggccg agaagaacca gatccccagg aacgccacgc tgatagagaa cagcgccgga
     9421 tactcatacg ggaagatcgc tttttcgtgg ccgaggatct gcacccaaat ggtagggcca
     9481 agaatcatca gcaccaccgc tgtcagtaaa cctaaccagc cgcccagcat agcgccgcgc
     9541 gtggtcagtt ttgaccagta catggaaagc agaatgatgg ggaagttgca gctcgcggcg
     9601 atagcaaatg ccaggcccac cataaaggcg atgttctgat tttcaaacag gacgccgagg
     9661 ataatggcga tcacgtccag caccaggacg gtgattttcg acaccttcag ctcttcacgt
     9721 tcggttgcgc ctttgcggaa cacgttggcg tacaagtcat gcgacaccgc cgatgcgccc
     9781 gccagcgtca gacctgcgac caccgccaga atggtggcaa acgccactgc cgaaataaag
     9841 ccgaggaaca ggttgccgcc taccgcgttg gccagatgca ccgccgccat gttattgccg
     9901 ccaatcagcg cgcctgcggc atctttatag gcgggattcg cccccaccag catgatagcg
     9961 ccgaagccga taataaaggt cagaatgtag aaatagccca taaaaccggt ggcgtagaac
    10021 acgctcttgc gcgcttcgcg ggcatcgctg accgtaaaga aacgcatcag aatatgcggc
    10081 aaaccggcgg tgccgaatat cagtcccaga cccaacgaca atgccgaaat cggatcttgc
    10141 accaatcctc ctgggctcat aatcgccgtg cctttcgggt gtaccgccat ggcttcggta
    10201 aacagattat tgaagctaaa gccgacgtgt ttcatcacca taaaggccat aaaactggcg
    10261 ccaaacagca acaggacggc tttgataatt tgcacccacg ttgtcgccag catcccgccg
    10321 aacagcacgt acatcatcat cagcacgccg accagcacta cggcgatgtg atagttgagg
    10381 ccgaacagca gttcaatcag tttaccggcg ccgaccattt gggcgatgag ataaagcgcc
    10441 accactacca gggagccaca ggccgaaaga atacggattg gcccctgttt caggcgataa
    10501 gaggcaacgt cagcaaaagt ataacgtccc agattacgca ggcgctcggc aatcaaaaac
    10561 aggataattg gccagccgac aaggaagccc agcgaataga tcagcccgtc ataaccggag
    10621 gtaaacacca gcgcggaaat gccgagaaat gacgcggcgg acatatagtc gccggcaatc
    10681 gccagcccgt tctggaaccc ggtgatattg ccgccagccg tgtagtagtc gctacgggaa
    10741 cgtacgcgtt tagaggccca gtaggtaata ccgagcgtaa acacgacgaa aatcaaaaac
    10801 atgataatcg cctgccagtt ggtgggctgg cgttcaaccg cgccgctaat ggcatccgcc
    10861 gcatgagcgg cgaaggggag tgcggcggcg agcgccgtca gaactctctt cataatgctt
    10921 tcacctcatg cagtacggcg ttattaagac gatcgaattc gccattcgcc cgccagatat
    10981 aaattccggt caacacaaaa gaaatcacaa tcaccccgac gccaatggga attcctcggg
    11041 tgacgctggt tcccgcatgt agaggcgtgc ccagccagcc aggcgcgaag gcgatcagta
    11101 aaataaagct gatataaacc gccagcatga taaccgacag aatcgtggca aaccgttgcc
    11161 gtttttcaac taattccctg aaacgcgcac tgtcttctat ccgctgataa atttggtcat
    11221 tcatcacaga gctctccaga ggtccccctg cgtctttcgc gctacaggcg cgctggccgc
    11281 actcgcgcgc cccagccaca tagtgaacta tgctgctgag ggtgtgctcg cttgccgcct
    11341 tcctgtaaca cgaaatcctt tgggggaggg tttttatatt tccctctccc ggtttgagag
    11401 agggcagggg tagggtcgta ggccggataa aacgcgttcg cgttgccatc cggcatttat
    11461 ggttatgacg gcatcgcgat ggcctgcttc tcttcgagca gtttctccac cacgccagga
    11521 tcggcgagag tcgaggtatc gcccagattg ctggtatcgc ccgccgcgat tttgcgcaaa
    11581 atgcggcgca taattttgcc ggaacgggtt tttggcagtg agtcggtcca gtgcagcacg
    11641 tccggcgtcg ccagtgggcc aatctcttta cgtacccagt tgcgcacctc cgcgtacagt
    11701 tctggcgacg gctcctcgcc gtggttgagc gtcacataag cgtaaatcgc ctggcctttg
    11761 atagcgtgtg gaatacccac caccgccgct tcggcgatct tcggatgcgc caccagcgct
    11821 gactcgattt ccgccgtacc cagacggtgg ccggagacgt ttaacacgtc atccacgcga
    11881 ccggtgatcc agtaatagcc gtcctcatcg cgacgcgcgc cgtcgccgct gaaatacata
    11941 ttcttaaagg tagagaaata ggtctgctca aaacgttcat gatcgccgaa cagagtgcgc
    12001 gcctggcccg gccaggaatc ggtgatgacc agattgcctt ccgtcgcgcc ttcttgcgga
    12061 tggccttcgt tatccaccag cgcaggctgt acgccaaaga aaggacgggt ggcggaaccg
    12121 gctttcagtt cgatagcgcc tggtagcggc gtgatcataa aaccgcctgt ttcagtctgc
    12181 caccaggtgt cgacgaccgg acatttttcc ttgccgatct tcttccagta ccattcccac
    12241 gcttcgggat tgatcggctc gccgacggaa cccagaatgc gtagtgaaga acggtcggtg
    12301 ccttcaatgg ctttatcgcc ttccgccatc agcgcgcgga tggccgtcgg ggcggtatag
    12361 agaatgttga cctggtgttt gtcgaccacc tggcacatgc gagcgggcgt tggccaattc
    12421 ggcacgcctt caaacattaa ggtggtcgcg ccgcaggcca gcgggccata caacagatag
    12481 ctgtgccccg tcacccaacc cacatcggcg gtacaccagt aaatatcgcc agggtgataa
    12541 tcaaagacat acttaaaggt ggtcgcggcg tagaccagat agccgccggt ggtgtgcagc
    12601 acgcctttcg gcttgccggt ggagccggag gtataaagga taaacagcgg atcttcggca
    12661 ttcatcgctt caggctggtg ctcagggctg gctttttcaa tcaaatcgcg ccaccacagg
    12721 tcgcggcctt cttgccagtc aatgtcgttg ccggtgcgct tcaggacgat cacatgctca
    12781 acgctagtga cattcgggtt tttcagcgcg tcatcgacat tctttttcag cgggatactg
    12841 cgtccggcac gtacaccttc gtcagcggtg atcaccagcc gcgagctgga gtcgataatg
    12901 cgtccggcga tggcttccgg cgagaagccc ccgaagatca ccgaatgcac cgcaccgatg
    12961 cgggcgcagg ccaacattgc caccgccgct tccggcacca tcggcatata aatcgctacc
    13021 acatcgcctt ttttaatgcc cagatccagc agtgtattcg cgaaacggca gacatcgcga
    13081 tgcagttcgc gataagagat atgtttactc tgcgacgcgt catcgccttc ccagataatg
    13141 gcggtgcgat cgccattttc ctgcaaatgg cggtcaagac agttcgccgc cagattcagc
    13201 gtgccgtcct cgtaccattt aatcgacaca ttgcctggcg caaaggaggt gtttttcact
    13261 ttttggtacg gcgtgatcca atcgagaatt tttccctgtt cgccccaaaa cgtatcgggg
    13321 tcgttaatag actgtttata tttagtctca tactgctctg gatttatcag gcaacgatcc
    13381 gcaatgttgg cgggaatggc gtgtttatgt gtttggctca tgctgttgtt ctccttgtag
    13441 gatgttaata atatgtcgca taaacgttaa atgtagggtc ttaataagtt ttgtttagta
    13501 tttgggcgac agatcacgca aaaagggagc tgtgcaaata agcagcaatc tattttttga
    13561 ttgtgtcccg caaaattaga taaattttcg ggataacatg acgttatatg aaatttttta
    13621 aaaaagtgat ccgtgtccgg aaatcagaaa agagagggag ttttgtccag gttactaact
    13681 ctaaagtggt attttacata cacttacaat tgattaaaga caacattttg agtgtggtta
    13741 tttgttacac atagaggaga tcaatgtaat aacagtattt gtgcggttgc tgttatggaa
    13801 aacgataaaa aatcgccatt aaagataatg gcgcaatctg gatgagacct ctatggcaag
    13861 gaaaacacta cgcgcacgcc gtttcttcag ccttatattt ccttttttct tcattacctc
    13921 tgtttacgct gagcaaacgc ctgtatccgc aaaaaccgtt actgttgaag cgaaaaatga
    13981 aacgttcgcg cctcaacacc ccgaccaata tcagtcatgg aaagcgacgt cagaacagtc
    14041 tgcccgtgaa gatgcgctgg cggaagaccc tcgtctggtg atcctgtggg cgggctatcc
    14101 cttctcccgt gattacaaca aaccacgcgg ccacgcgtat gcggtaaccg acgtgcgcga
    14161 aacgctgcgt accggcgcgc caaaaacggc ggaagacggc ccgctgccga tggcctgctg
    14221 gagctgtaaa agccccgatg tcgcgcgcct tatccaacaa gaaggcgaag acggctactt
    14281 ccatggcaaa tgggcgcgcg gcggcccgga aattgtcaac gatttgggct gtgccgactg
    14341 tcataacacc gcgtcggacg atttcgccca ggggaagcca gcgataacgt tgtcgcgccc
    14401 ctatgccgaa cgggcgatgg aggctatcgg caaaccgttt gataaagcgg gacgatttga
    14461 tcagcaatcg atggtctgcg gccagtgcca cgtggagtac tacttcgacg gtaagaacaa
    14521 agccgttaag ttcccgtggg atgagggcat gaaggtcgaa aatatggagc aatactacga
    14581 cgccatcgcc ttctctgact ggactaactc gctgtcgaaa accccaatgc tcaaagcgca
    14641 gcacccggaa tatgaaacct ggagcgcggg cattcacggt aagaacaacg tgacctgtat
    14701 cgactgccac atgccgaaag tacagaacgc cgaaggcaag ctctacaccg accataaaat
    14761 cggcaacccg ttcgacaatt tcgcgcaaac ctgcgccaac tgccacaccc aggacaaagc
    14821 gtccctgcaa aaagtggtcg ccgagcgtaa acaggcgatt catgacctga aaatcaaggt
    14881 tgaagatcag ctggtacatg cgcacttcga agcgaaagcc gcatgggatg cgggggcgac
    14941 agacgcggaa atgaaaccga ttctgaacga tattcgccac gcgcagtggc gttgggatct
    15001 ggcgattgcg tcacacggta ttcatatgca tgccccggaa gaaggtctac ggatgttagg
    15061 cagtgcgatg gataaagccg cggatgcccg aactaaactg gcgcgactgc tggcgaccaa
    15121 aggcattacc catgaaattc cgctgccgga tatttcgacg aaagagaagg cgcagaaagc
    15181 gattggtttg aatatgcaac aaatcaacgc ggagaagcag gacttcctga aaacggtcgt
    15241 accgcagtgg gaagatcagg cgcgtaaaaa cggtctgtta agccaataac ctcacatgtg
    15301 acaaatttgc cggatgacag cgcaagcgct ttatccggcc tacagaagtc ttgtaggcct
    15361 taaagctgcg cgccatcagg cattatgtaa tggagtgaat atgagcgtat tacgttcgtt
    15421 attaactgct ggggtgctgg catcaggcct gttctggagc ctgagtggaa ttactgccac
    15481 gccaacgccg caggagtcgg atcaacgctg gacggtcacc cagcagcgta atccggatgc
    15541 tgcctgtctg gactgtcaca agccggacac cgaaggtatg cacggtaaac atacgggcgc
    15601 tatcaacccg aacaataaat tgccgataac ctgtaccaac tgccacggtc aaccgtcgct
    15661 tcaccaccgt gaaggggtga aagatgtgat gcgttttaac gacccgatgt atacggtaga
    15721 gcagcagaac agcgtctgta tgtcctgcca cttgcctgaa caactgcaaa aagcgttctg
    15781 gccgcacgat gttcatgtta ctaaagtgac ctgcgccagt tgccattccc tgcatccgca
    15841 gcaagacacg atgcagacgc taaacgagaa agggcggatc aaaatatgcg tggattgcca
    15901 cagcgatcag cgtactaacc cgcactttaa cccggcgtcc gttccgttgc ttaaggagca
    15961 gccatgagtt gcacccgacg tcaatttatt acccgcgtcg gcgcgctggc ggcggtcagt
    16021 gggatggcag gacgcgttgt agcgaacacg ttgaatatta acggcgtgcg ttatggcatg
    16081 gtacacgatg agtcattatg catcggctgc acggcctgca tggatgcctg tcgggaagtc
    16141 aacaacgtgc cggaaggcgt atcgcgcctg acgattattc gcagcgagcc gcaggggacg
    16201 tttcctgatg tgaaatatcg cttcttccgc cactcgtgcc agcattgcga ccatgccccc
    16261 tgcgttgacg tctgcccgac cggcgcatca ttccgcgatg ccgccagtgg tattgtcgac
    16321 gtgaacccgg acctttgcgt cggctgtcag tactgcattg ccgcgtgtcc ctaccgcgtg
    16381 cgctttatcc atccggtcag taagacggcg gataagtgcg atttctgccg gaaaactaac
    16441 ctgaaagcgg gcaaacagcc cgcctgcgtt gagtcatgtc taacgaaggc gctgacgttt
    16501 ggtaatctgg acgatcccaa cagcgatatc tcccgtttgt tgcggcagaa aaccacctat
    16561 cgttacaagc tggcgctggg cacaaaaccg aaggtctacc gcgttccctt taactatggg
    16621 gaggtgagcc aatgacatcc gcttctgcat ttcattttgc atcactggtg tgggactggc
    16681 ccatcgccat ctatctgttc ctgattggca tctccgccgg actggttacg ttggcgattc
    16741 tgctacgccg cttccatccg gaggcgggcg gttcggacag cacgctgctg cgcactacgc
    16801 tggtgttagg gccgggggcg attattcttg gtctgctgat tctggtcttc cacctgacgc
    16861 gcccgtggac cttctggaag ctgatgtttc actacagctt tacctcggtg atgtcgatgg
    16921 gggtgatgct gttccagctt tacatggtgg tcctgatact gtggctggcg aaaatctttg
    16981 aaaaagaggt gattgccctg cagcaacgtt ggctgccgcg gttagagatc gtgcagaaag
    17041 tgttgacgct gatcgcgccg ttccaccgtg cgctggagac gttaatgctg gtgctggcgg
    17101 ttctgctcgg cgcgtacacc ggctttctgc tgtcggcgct gaaatcctat ccgttcctga
    17161 ataacccgat cctgccggta ctattcctgt tctccgggat ttcctccggc gcggcggtgg
    17221 cgctgatcgc catggcgtta cgccatcgta gcaacccgca cagcacggaa gcgcgctttg
    17281 tgcatcgcat ggaggttccg gtggtatggc tggaaatttt cctgctggcg gcgttcttcg
    17341 tcggtctggc gctgggcgat gacggcaaaa tgcgggcgct ggcggcggcg ctgggcggcg
    17401 gattctggag ctggtggttc tggcttggcg tcgtagggct gggattgatt atcccgatgc
    17461 tgctaaaacc ctgggccaac cgcagcgtca cgtttcacgg cgtgctggcc gtttgcggcg
    17521 ccagtttgac cggcgtgctg ctgctgcgct ttttcattct ttatgcggga cagctaacgg
    17581 ttgcataatc tggacatctt ccttcctgaa gccggatttc tggcgctgtt gttgagtctc
    17641 ggggtcaacg tgttaacccc gctggcgacg tggtgcggga tggcgcagca ttggcgtggc
    17701 gtcatgcgcc tgacgacctg cggcgcgtgg acggcgttca cgctgctgct actggcgttt
    17761 gcgattctgt ttagctgttt tctgaccagc gatttttcgg tcgtttatgt tgcgcagcat
    17821 agccatagtc agttgtcatg gggactgaaa ctggcggcgg tatggggcgg tcatgaaggc
    17881 tcgctcctgc tgtgggcgct gcttctttcg gggtggacgg tgctattcgc ctggcgctcc
    17941 cggcatgaat ctgacgcgct ttttccgctg accctgagca tcttgtccct cattatggct
    18001 tcgctgctgc tatttattgt gctgtggtcc gatccgttcc tgcgtatttt ccctcccgcc
    18061 atggaagggc gcgaccttaa tcccatgctg caacatctgg ggctgatctt acatccgccg
    18121 ctgctctatc tgggttatgg cggcctgatg accgcggcga gcgtagcgct ggcctcgcta
    18181 ctgtgcggcg gctttaacgc ggcaaccgcc tgggtgtgct ggcgctgggc gttactcggc
    18241 tggtgcgctc tgacgctggg gatcattctc ggatcgtggt gggcgtattg cgaactgggc
    18301 tggggcggct ggtggttctg ggacccggtg gaaaatgcct cattgttgcc gtggcttgcc
    18361 gccagcgcgt tgctgcacag tctgtatgtc agccgccagc gcgggagctt ccgccactgg
    18421 tcgttgctgc tggcgatact gacgctgatc ctctcgttgc tgggaacgct gattgtgcgt
    18481 tccggcattc tgctctccgt ccatgctttt gcgttagata atgtgcgcgc ggtgccgctg
    18541 tttatccttt ttgccgcgtt aagtctggca tcgcttgctc tgtacggctg gcgggcacgg
    18601 gagccgtatc cggcgacgcg tttgggcggc ggaaagtgcg aaacgctcat tctggcgacg
    18661 ctgctgctct ttagcgccgt cttgttgatc gtgctggtcg ggacgctcta ccccatgatt
    18721 tatggtttga tgggctgggg aaggctttcg gtgggcgcgc cctattttaa tcgcgtcacg
    18781 ctgccgtttg gcctgctgat gctggtggtt atcgtgcttg cgacaatcag aagccgcaaa
    18841 gtctctgtgc atcgtcagct tccggcgttg ctggcgcata cgggcgtatt tatcttcgcc
    18901 gccgggatca tggtttccag cggcagtcgg catgaaatca gccttaacct cagcccgggg
    18961 cagcaggtgg tactggcggg ctataccttt cgtttcgagc gtctggatct ggaagccaaa
    19021 ggcaactaca ccagtgaaaa agcgcggatc acgttgtggc ggaatgaaaa acgcattggc
    19081 agcctgcagc ctgaaaggcg cttctatgcc gcgcgtcgtc aacagatgat ggagccgggg
    19141 attcactgga acctgctaca tgactggtac gcggtgatgg gcgaaaaaac cggagcggac
    19201 cgttacgcca tgcgcttata cgtgcagacc ggcgtgcgct ggatctgggg agggggattg
    19261 ttgatggtgt gtggcgcgct gctgagcgga tggcggggga ggaagcgtga tgcgtaaatt
    19321 actcacagcg ttgccggatg gcggcgtaag cgccttatcc ggcctacagg atgcgcaaac
    19381 cgtaggccgg attagcgtag cgccatccgg cagaaagttt ttactcttaa cgatcgtcct
    19441 gtttttaatc acattcgcca cccacgccca ggtggtggat acctggcgct ttgacaatcc
    19501 acaacagcag gaaaaagcgc tgtctattgc cggtcaactg cgctgtccgc agtgtcagaa
    19561 ccagaatttg ctggaatcca atgcgcccgt ggcggtcagt atgcgccatc aggtttacag
    19621 catggtggcc gaaggtaaaa gcgaagcgga aatcaccgcc tggatgaccg accgttatgg
    19681 tgatttcgtg cgctacaacc cgccgttgaa tgagcaaacg ctgctgttgt gggcgctgcc
    19741 gtgcctgctg ttattgttgg tgggcgtggt ggtctggcgg gtgagaaagc gtcagcacgc
    19801 agaagagggg gaacaatgag ccagtctgag cactccactg tgccgttacg tcccatgccc
    19861 gtaaagcgtc tgacggctgc ggcggtgttg atggtggctg tctgtatcgg cggctatatg
    19921 ttgacgccga aatggcaggc tgtgcgtagc gagcaacagc gtctggccga tccgctacgt
    19981 gactttacga acccgcaaac gccagaggcg cagctttcca ggctgcaaga aaaaatccgc
    20041 gccaatccgc aggatagcga gcaatgggcg cggctgggcg agtattatct ctatcgcaat
    20101 gcgtatgaca atgcgctgct ggcatatcgt caggcgttgc gtctgcgagg cgataacgcg
    20161 cagcttttcg ccgcgctggc aacggtgctg tattaccagt ccgggcaaca tatgacgcct
    20221 gcgacgcgtg aaatgattaa taaagcgtta gcgctggatg cgacagaagt gaccgcgcag
    20281 atgctgctgg cggcggatgc gtttatgcag gcggattatg cgcaagccgt gtcgctgtgg
    20341 caaaccttac tggatgcaaa ctcgccgcga gtgaaccgcg cgcagctggt agaggccatt
    20401 aatttggcta aattgttaca aaatcggcag aaataatttt ttcttttttg tgacttttgt
    20461 catgtgtgct gtttaaaaaa acggcgaatg cgccacaggt aaaaattaat tacctcagaa
    20521 tattattcga ttttgacgaa gtaaaaaact ttccataaca aatagttatt catcattaac
    20581 accataaact cgcgttatta tgcataaaaa cagccaaaag ccctgttatg aaagggttgc
    20641 gcaagacgct atgcaaatga tactgattat gcgcgttaaa aaactctaca aaccaacgca
    20701 acacaaatca tacccttcca gtatgtattg ctctcatgct ttcggcggag agcaacgctt
    20761 catcgaggaa gtctgttgtt atgaaaaatt tgaaagtcag cctggcctgg caaattttgc
    20821 tggctatggt gctgggcatt ctgctgggca gctatctgca ttatcacagt gacagccgtg
    20881 aatggctgat tgccaatctg ctgtcgcctg ctggcgatat ctttatccat ctgattaaaa
    20941 tgatcgtcgt gccaatcgtg atctcgactc tgattgtcgg catcgccggc gttggcgatg
    21001 caaaacagct aggccgtatc ggcgccaaaa ccattctcta ttttgaactg atcaccacgg
    21061 tggcgattat cctcggcatt acgctggcga atgtctttca gccaggctca ggcattgata
    21121 tgtcgcaact ggcgaccgtc gatatttcga aataccagaa caccacggcg gaagtacaaa
    21181 gtcatgcaca tgggctgatg gggacgatac tgtcgctggt gccgaccaat atcatcgcat
    21241 cgatggccaa aggggatatg ctgccaatta tctttttctc ggtcctgttt gggctggggt
    21301 tgtcatccct gccggcaacg caccgcgaac cgctggtgac ggtatttcgt tccatctctg
    21361 aaaccatgtt taaagtcacc catatggtga tgcgctatgc gccagtgggc gtttttgtgc
    21421 tgatcgccgt cacggtagcg aattttggtt tcgcgtcgct gtggccgctg gcgaaactgg
    21481 tgctgctggt acactttgcc attatcttct ttgcgctggt ggtgctgggc atcgtggcgc
    21541 gcctgtgcgg gttaagtatc tggattctga ttcgcattct gaaagatgaa ttgattctgg
    21601 cgtactcgac cgccagctcc gagagcgtgc taccgcgcat tatcgagaag atggaagctt
    21661 acggcgcgcc agcctctatc accagtttcg tggtgccgac cggttactca tttaacctcg
    21721 acggctccac gttataccag agcatcgccg ccatttttat cgcgcagcta tacggtatcg
    21781 acctgtcgct gtggcaggaa attgtactgg tgctgacgct gatggtgacg tcgaaaggga
    21841 ttgccggcgt gcctggcgtt tccttcgtgg tgttactggc gacgctgggc agcgtgggca
    21901 ttccgctgga agggctggcg tttatcgccg gtgtcgaccg tatcctcgac atggcgcgta
    21961 ctgcgctaaa tgtggtgggg aatgcgctgg cggtgctggt tatcgccaag tgggaacaca
    22021 agtttgaccg taaaaaagcg ctggcctatg agcgcgacgt actgggcaaa tttgataaga
    22081 ccgcccaata acggattgcc ggatggcgct ttgcttatcc ggcctacaga gaaagagaat
    22141 gtaggccgga taaggcgttc acgccgccat ccgacaaccg gctccgggtt gcctgatggc
    22201 gctacgctta tcaggcctac aacgactacg ttcatcaggc aataaacatc agccatttgt
    22261 tagcgtttcg aactcttcgc aaccggtatc aaacccttcc agacagctta gattcaacca
    22321 atgcaacgcc ttctgcttgt tcttttcaat aaagcccggt tcaccgttta aaaacatcat
    22381 tcccgcccag tattctgaat agccggtacg ggaaatagcg gaactgcgtt tgaaatacca
    22441 ggcggctttt tcatcatcgg cggcaatgcc cacgccgttg gcgtaaatca ggccaagcaa
    22501 catttgcgca tccaccgcgg agtcgttatc cagatcttca gaggcctttt gcagcagcga
    22561 gatggctttt gggtagtccg gacgcccggc ctgggtgttg accaggatcc gcgccagcgt
    22621 aatttctccc gctttactgc ccgcgttagc cgccttttca gccagctttt tcgcgtcggg
    22681 ataatccagg cttaccggat tagtgatttt gatttgcgcc agtagcgcgc aggcgtcggc
    22741 gtcgccattg tcggcggctt tttgcgccca gtattcagct ttgttcaaat cgccatagct
    22801 caaccaactg tcggccagaa aatattgcgc gcgtctgtca cctgcctctg ctgcctgcaa
    22861 atactggcta cccggctcag gatctgcggc atgggcaaag aatgtcataa acaacatcaa
    22921 tgcaataagt ggtttcattt tgaattttat ttagggtacg gaaaagacag tataaagaga
    22981 tcgtatggat aaaaaaacag cctccgggcg gaggctgtta tagggaaaat gcctgatggc
    23041 gatgctaatg catattatca ggcctacagt agacgcaggc cgaataaagc attctgatgc
    23101 cgccatccgg cagatcaacc cattgcgctt tcgcgcaggc gggttttcag cttgttgtac
    23161 tcatcaatca catactgctc ggcggctcgc tgatcggcga tcggctcaac gcgtacggcg
    23221 cagtatttgt actccggcgt tttggtaatc gagctgaggt tttcagtcac cagctcgtta
    23281 caggcgccaa tccaccactg gtaggtcatg taaatcgccc ctttgttcgg gcgatcgctg
    23341 acctgcgcgc gggtgatgat tttgccttta cgcgaatgaa cccacaccag cgcttcatct
    23401 tcaatgccca gacgcgcggc gtcggcggta ttgatttgcg catagcccgg ttcatcggcc
    23461 agcgcggcca gcgccgcaca gttaccggtc attgagcggc aggagtagtg gccgacttcg
    23521 cgcaccgtcg acagtaccat cgggtactct tcggtgagtt tatcgatagg cgctacccag
    23581 tcgcaggtga agaactgcgc cagaccgttg ggggtatcga acttctcttt aaagaggtac
    23641 gaggttccct gatcggcatc cgacgtgtcg cggcatggcc actggatata gcccagttcg
    23701 cccattttct cgtaagtggc gccgtagaaa tccgggcaca gatgacgcaa ctcatcccag
    23761 atctcctggg tgttgttgta gtgcatcgga tagcccatcc gggtggcgat ttcactgata
    23821 atctgccagt cggttttcag gtcccacttc ggctcaacgg ctttaaagaa gcgctggaag
    23881 ccacggtcag ccgcagagaa gacgccttca tgctcgcccc aggaggtgga gggtaaaatc
    23941 acatccgccg ccgacgcggt tttggtcatg aagatgccct gcacgatgac cagttccagg
    24001 tcctcaaacg ctttacgtac cgcagagagc tccgcatcgg tttgcagcgg atcttcaccc
    24061 ataatgtacg ccgcgcgcac ttcgccatgc gccgcacggt gcggcagctc gctgatgcga
    24121 tagccggtat gtgcaggcag actttctacg ccccaggctt tagcgaactt ctcgcggttt
    24181 tccgggaatt taacgtactg gtagcccgga taagtatccg gcagcgcgcc catatcgcac
    24241 gcgccctgaa cgttgttctg gccgcgaacc gggttaacgc ccgcgcttgg cttgccgagg
    24301 ttaccggtca gcatcgcgag gctggtcagt gaacgcacgg tttccacacc ctgatagaac
    24361 tgggtgacgc ccatacccca caagatcgcc gcgcttttcg cgctggcata catccgcgcc
    24421 gcctgacgaa tctcctgtgc gctcacgcca gtgatctctt caacggactc cggcgtatag
    24481 ccttcgacaa tcttactgta ctcttcaaaa ccttcggtac ggctggcgac aaacgctttg
    24541 tcgtacaggt tttcttcaat aatgacatgt cccatggcgt tgagcagcgc gatattcgag
    24601 ccgtttttca acgcgatatg catgtcagcg atgcgcgcag tttcaatttt gcgcggatcg
    24661 cagacgataa ttttcgcccc gttgcgttta gcgttaatca catgattcgc cacgataggg
    24721 tgggaatccg ccgggttata cccgaagacg aacactaaat cagtgttatc aatttcgtta
    24781 atcgcattac tcattgcgcc gttaccgacc gattggtgca gacctgcaac cgatgggccg
    24841 tgtcagacgc gagcgcagca gtcaacgtta ttggtaccaa taacggcgcg tgcgaatttt
    24901 tgcattacat agttggtttc atttccggta ccgcgagagg agccggttgt ctggattgca
    24961 tccggaccgt acttcgcttt gatggcgctc aaacgttcag cgacgtaatt gagcgcttca
    25021 tcccaggaaa cagattccag tttgccgcca cgctggcgac ggatcattgg ggttttcaga
    25081 cgcggggtca ggatctgggt atcattaata aaatcccagc catagtagcc cttcagacac
    25141 agggtaccct ggttggtttt cccctgcgcc gcctcagccc ggacgatttt gccgttatcg
    25201 accaccagat tgattttgca acctgatgcg caatacgggc aaaccgtgac gacttttttc
    25261 atcggtttcg ctccagttaa tcaaatcgcg catacgcgct gtcgccctca gtatgcatgt
    25321 tttatgccac ttttttagta tgggctttcc ctgatattac gggcgaattt tgctcaaaac
    25381 cctgacgaaa aacaggctat cgtcagtttt gacgtgtcga aagaaaatgc cgcatgacat
    25441 ttattatggg gagaaacgcg gagcgcaggc cagataaggc ggaacgctct gcctgaagtg
    25501 gatattatcc ggatggatag actcaaggtc agggaacgct ttgagactaa cgccaggata
    25561 gaacaggccg cggcaggcag tttcataccg tggcccggct tcagaggagg ctgaaaagga
    25621 ttatcgcggc aaaaatagcg gcaataacga gatatttcag cgcgtaatag agagtacggt
    25681 ttttcttttt cagccgttgc ccggcatcgc gtgctgcgtg aacgtattta aagatgcgat
    25741 taatcgcacc ggtgcgatcg ttctcgtcgt ttggcgaact ggcggcggac atcaacgatg
    25801 cgccgaccca gtggtttacg ctctgcgccc agcgccattt cattgggcgc tcaatatcgc
    25861 aaaagaggat aatacgcgtc tgctcagttt tattttccgc ccaatgaacg taggtttcgt
    25921 cgaagatgac ggcttcgccg tcgcgccagc tatggcgctg tcgatcaact tcaataaaac
    25981 agcggtcatc attcggtgtg cttaatccaa gatggtaacg tactgaaccg gcataggggt
    26041 cgcgatgttt tcccagatag gccccgggag gcaactcggc gaacatcgcc gctttgatag
    26101 aggggatgct gttgaccagc tttgtcgtta tcgggcataa cgtttctgcc gacgggtggg
    26161 catcggaata ccatttaaga taaaaccgtt tccagccgcg cttgaaaaag gtgttgaatc
    26221 cggcgtcgtt attggcctgc gcggctttta tgtgatgctg aagccgtagc gcctcttcac
    26281 gaatcacctg ccagttttcc gtcagcttct gcagctctgg aaatgccgtg gtatcaaagt
    26341 acggctgctt tgccggtaac gttgagaagc gagtcatgaa catattgatc ggcgccataa
    26401 acgtcgagtg gtcaaagagc tgacgggaaa gtttttgttt ttccaccccg cgtgaatgcg
    26461 cataaatgac gctgataata aaaataccga taatgattgc tgcgaacata acgtcactgt
    26521 ccttctaaga aaacctcatc ccgggatttt caggcaaccc tcccggtgat gccaaagaga
    26581 aaagtgtagt tcgttgacaa taaatttaca tttctacaac ttaaaagggc catttttgtt
    26641 aaagaagcga gtcagcccgt ttaaccttta tccaggcttg tcgacagtag aattgagatg
    26701 actccgctac ttcacccggt gacggctgat tacgttatgc cttatctcct gatgacggtt
    26761 gccagatcac aatgctttcg taaaccggaa atgactttgc ttgtaacctt cgcgaagata
    26821 aaaacggtgt gcatcgcggc gtttaatatt tgtggaaagc tccgttagct ccgcacccgc
    26881 ctgacgtgct tcttcttctg cccaggccag aagctgactg ccaacttttt gtccccgcat
    26941 ctgcggtaat accaccagct cctgaatttc gccaatccag ttggcatgat ggagatgaaa
    27001 ctgcatatgc aggctgatca tgccgaccac ctctccgttg cgtagcgcta aacgataatg
    27061 aaggttgggg tccagtaaat tagcggcgaa cccatccctg aaagcctgat aatcaagctc
    27121 atttttaagt aactcacaga taagcgcgta aacagaatcg gtatcctctg ttgtcgcgtg
    27181 gcgtaattca cagactggca taatgtcctc ccgacgcttc atcaggatca accatctttc
    27241 gccagactgt agcaaactac cgtcattatt tattctatgg cagctaaacg gcggataacg
    27301 tgcagccaaa gatcactctg atggcaaggg ggaaggcgag cctcccgggg agttaggtgg
    27361 caggctgatg tttaaccacg ttaatcatcc acggcacacc gaaacgatcg ctgaccttgc
    27421 cgaaaccctg cgcccagaaa gtctcctgcc agtccatttc gatttgccct tgtgcggcaa
    27481 ggttatcaaa ccagcgcttc ccttctgcta catcctgggt atcaagcacc agcgtaaagc
    27541 cggaataatg cgccgttccc gacgcgctgg catcactcat catgatatcg ctgcccgcaa
    27601 tgcgcatgtt ggcgtgggcg atagcagtat cgggaaagcg cattcctgac gggcagccct
    27661 cttcattatc cgccgccgag gggggcattt caccgaagct gagtttataa agcagttctg
    27721 cgcctaacgt ttgttgataa tacgcgatgg cgtcggcaca gttgccggca aaagagagat
    27781 agggacttaa cggcatgatg gttacctcag gtaagagatg ctcgttaagt gtagttcgaa
    27841 attggcacaa tattgtcggt ggcagggccg ctcaggcccg gtaagcaagg cgctaccggg
    27901 caatgatacg gtaaatcagt tctttttcac gaactcggat ttcagtttca tcgggccaaa
    27961 accatcgatt ttgcagtcga tgttatggtc gccttcaacc agacgaatgt tcttcacttt
    28021 ggtgccgatt ttcagcatgg aagagctgcc ttttactttc agatctttca cgatggtgac
    28081 gctatcgccg tccgccagca ggttgccgtt ggcgtctttg acaatcagct catcgctctc
    28141 ctgagcgggt tccgcatcgt tccattcgtg agcgcattcc gggcagatga acatgccgtt
    28201 atcttcgtag gtatattcgg agttacattg cgggcagtgg ggtaatgaca tgttggtatc
    28261 ctcaaaaagt cagcgggggc aaacgcgccc aaaaatggca gatcgccgaa aaaggccgca
    28321 attatacaca aaatccttag tgttgtcggg actattgccg cttttataaa aggggctgcg
    28381 ccacgccagt cagcaatggt ttacactcga ataaccgctt ttttactgcc actacagcgc
    28441 attagggcgt ccttgtttac accttttgac caaattgaca tatatgtgtg aagttgatca
    28501 catatttaaa ccctgttagg gtaaaaaggt cattaactgc ccattcaggc gtcaacaggt
    28561 tcggttgtac agtccgtaac cggacagtgt aagtaaacct gctacgcttg tatgagggat
    28621 agcgttcgcg cccctccctc cgctcgacgg cgacgctggc gcggtatgcc agtgcccgcc
    28681 gtatatagcg ctacagggct tagcctatga ggacagctat gctgaaaagg aaaaaaataa
    28741 aaccgattac actgggcgat gtgaccatca ttgatgatgg taaacttcgc aaagcgatta
    28801 ccgccgcgtc gctgggcaac gcgatggagt ggtttgattt tggtgtttat ggatttgttg
    28861 cctacgcgtt gggtaaagtc tttttccccg gcgccgatcc cagcgtccag atgattgccg
    28921 cgctggccac gttttccgtt cccttcctga ttcgtccgct cggcgggtta ttctttggta
    28981 tgctcggcga taaatacggg cgccagaaga tcctggcgat cacgattgtg attatgtcga
    29041 tcagtacctt ctgtatcggg ttaatcccct cttacgcgac gatcggtatc tgggcgccaa
    29101 tactgttgtt gctgtgtaaa atggcgcagg gcttctcggt tggcggggaa tataccggcg
    29161 cgtcgatctt tgtcgcggaa tattcgccgg atcgtaaacg cggatttatg ggaagctggc
    29221 tggattttgg ttccatcgcc gggttcgtgc tgggcgcggg cgtggtggtc ttaatctcga
    29281 cgattgtcgg cgaggagaat ttccttgagt ggggctggcg tattccgttc tttatcgccc
    29341 tgccattggg gattattggt ctctacttac gccatgcgct ggaggagacg ccagcgtttc
    29401 agcagcacgt ggataaactg gagcagggcg accgcgaagg gttgcaggat gggccgaaag
    29461 tctcctttaa agagattgcc accaaacact ggcgtagcct gttgtcatgt atcggtctgg
    29521 tgattgccac caacgtgacc tactacatgc tgctcaccta catgccgagc tacctgtcgc
    29581 ataacctgca ctattctgaa gatcacggcg tgttgattat catcgccatt atgatcggga
    29641 tgctgtttgt gcagccggtg atggggctgc tgagcgaccg tttcggtcga cgtccatttg
    29701 tgattatggg cagcattgcg ctgttcgcgc tggcgatccc ggccttcatc ctgattaaca
    29761 gtaacgttat tggcctgatt tttgccggtt tgttgatgct ggcggtgatt ctgaactgct
    29821 ttaccggggt gatggcctcg acattgccgg cgatgtttcc gacgcatatt cgttacagcg
    29881 cgctggcggc ggcttttaat atctctgtat tgattgccgg tctgacgcca acgctggcgg
    29941 cctggctggt ggaaagctcg caggatctga tgataccggc gtattatttg atggtcatcg
    30001 cggtgatagg cttgattacc ggtatttcca tgaaagagac ggccaatcgt ccgttaaaag
    30061 gcgcaacgcc agcggcgtcg gacatccagg aagcgaagga aattctgggc gagcattacg
    30121 ataatattga gcagaaaatc gacgacatcg atcaggaaat tgcggagctg caggtcaaac
    30181 gttcgcgtct ggtacagcaa catccgcgta tcgatgaata aatttcgcgc ttaaggttcg
    30241 cttaatctct cgcgggcata ctctcctcca tacctttgga ggagagcgtc atgaaaagct
    30301 atatttataa aagtttgacg accctgtgta gtgtgctgat tgtcagcagt tttatctatg
    30361 tgtgggtcac gacgtattaa acgcctgtta tgcctttttc aacagcaccc aggcacgggt
    30421 gcctgttctt tccgtacggt tttgcaggaa aaactgtccc tgatgtagct gggtgatgcg
    30481 gctgacgata ctcagcccca ggccaattcc gccataacgg ctgtccatcc gcacgaacgc
    30541 ttcgcttagc ttcccgcatt tgctttcatc aatacccggc ccctcgtctt cgaccgccat
    30601 aatagcgtcg gggtcggcgc taatgtggat agtgatatgg gttccttcag ggctatagcg
    30661 atgcgcgttt tccaccagat ttcgcagcag catacgcagt aacgtcgcgt caccgcgcac
    30721 caccacgtcc gccgcacttt ccggcagcaa cagagtttgc tggcgcgttt ccagcatggt
    30781 gttcagctca tcgtaggagg ggaggatcac atcttccagc agttttactt cctgataatt
    30841 cccggaagag aatgactggc ccacgcgcgc cagttgcaga agctgggaga cgctatccat
    30901 catctggtca agacgggcga taagcggcgc gacatcaaca ttgtgggttt ttgacaataa
    30961 ttccagatgc aaacgcaccc ccgacagcgg cgtgcgtagc tcatgggcca catcggcggt
    31021 aaaaaggcgt tcattgtcga gcgtggtggt caaacgcgta accagttgat tgatcgccga
    31081 gacgacggac tcaatctcaa gcgtggagct gtgaatggcg atcggcgtca gattatccgc
    31141 cgtccgcgct tccagctctt tttgcagttc ggcgagtggg cgggtaatac gccgtaccgc
    31201 ctggtagcaa accagcagcg tcaggctaac cataaatacg ctggggacga tcaggctggc
    31261 gaccgcctcg cgaatttcgt gcatgatatg gcgatcgttg ttgcgattat cccgcagcgc
    31321 ctgctcgaac agttggattt gctcagtgct ttcatgccat aaccagaagg tactgattag
    31381 ctggaacacc agcagaataa gaccaattgt cagcgttaaa cgctggcgaa gggtcatcgc
    31441 tcttcgctga aaacgcatca ggctcactta gctttcctca gtggcaacca gcatgtagcc
    31501 aaacctgcga accgtgcgaa tgcgcgactt gccgactttg tcgcgcaaat tatgtatatg
    31561 cacttccaga gtgttggtcg agggttcgtt atcccagttg tagatatcgt tataaagaat
    31621 ttcccggtgc accggactgc ctgccttgag catcaatcgt gagagcagcg cgtactcctt
    31681 aggcgtcagg gtcagttcct gtccatccct ccatgcctga tggcggccta tattgagcgt
    31741 cagattgcca accgtcagtt cactttcacc ctggttatta tggcggcgca gcaacgcgcg
    31801 gatgcgggcg tgcagctcct ccagggcgaa gggttttacc agataatcat ctgcgccgac
    31861 atccagcccg ctaatgcggt cgttgagcgt atcgcgggcg gtcagaatga gtaccggcag
    31921 ggtgtatttt ttctgtcgga ttcgcgtcag gaaatgcagg ccatcctcat cgggcagccc
    31981 taaatccagc accatcagac tgtaatgacc agactccaga ctatgctcgg cggcacgcgc
    32041 tgtcgaaacg ccatcacacg catagccttc ggtttgcgcg gcgagtatta acccctgtaa
    32101 taatagcgtg tcgtcttcaa caatcagtat cttcattcgc ttagtctcct gcacggttgc
    32161 agaatatcat ctgcggcctg gtaatacgtc gtttgtacgc cggttaatcc cagcatggtt
    32221 gagaaaagat tgtcctgtga ataatccagc gtgctcgccc gtttttgcag gcaggcctga
    32281 tccacctgat aacgctgttg ataatcttta gaaagccaaa tgagcatcgg gacatgtttt
    32341 tgcgtatccg gcgcaatgga atacggcaaa ccgtgtaaat aaacgccatt ttcacccaat
    32401 gattcgccgt gatcggaaag atagaccagg ctggtggtga atttatcctg gtgagatttc
    32461 agcaggttaa tggctttatc tacaatatag tccacgtaca gcacggtatt atcataggtg
    32521 ttgatcaact gctgttggga acagttctga atttcgttag tgtcacaggt tggggtaaat
    32581 tttttaaact gcggtggata acggttgtaa taggttgggc cgtggctgcc gatggtatgc
    32641 agtacaataa cgccatcgcc tttcaaatgg tcgatatagt cttccagacc gtgaaataac
    32701 acttcatcgt agcactcgcc gtcgatacat tgtccgggca ggtttagctc ggtgacattt
    32761 tgatgcggaa cgcgatcgca tgcgccttta cagccgccgt cattatcatt ccacagtacg
    32821 ttaatccccg cgcgctggat aatatccagt agcccttcct ggtgatgcgc cagctcttcg
    32881 tcataatgtt tgcgcggcat atcagaaaac atgcagggaa cggagatcgc ggtcgccgta
    32941 ccgcaagagg tggtatgcgg gaagtagatc acatcgtctt tcgccagccg cggattggtg
    33001 tcgcgcggat agccgccaag agagaaatca tcgccgcgcg aggtttcgcc aacgatgaga
    33061 atcgtcaggt ttttgcgatc gcctttcagc attaatggat tgcgatgggc atcctcgcca
    33121 atgcgtacca gcggcaaatt cgccagccgt tgatgcgaat accatgacca actggcgaca
    33181 atactgttcg atgggcttaa cgctttgatc aactgtttat tatttcgaaa tagcgaggcg
    33241 taatctttat agaaaaaggc ggcgaccaga ataactaata aaatagagat caggacgctg
    33301 gccaggcggt aaagcccgct ccgtaagcgc ggcgtcgccg gacggatttt gacccagaag
    33361 gcaatcacgg ctgccagaac gccgcttaat cccagcgtca gcaccatttg cggcgtcatc
    33421 agagcaaaag tttccgcggg cgtggtatcc atcatattgg cgatcatgga gcgatcgatg
    33481 atgatgccgt aagtcaaaat aaaatactgc gcggcagcgc cgaccagaat aaaaatgcag
    33541 gccagcagtc ggtttagcca aataaatgag gccagcgtca gcacactatt gaccacgcta
    33601 aacgcgacga ccggcatgga aataaacacc agcacattgc gcagcgagtt taacggtagg
    33661 tcttgtagta cctgcttgta gaacgcaatg ttcaggcaga cggcaatata aaaggaaaaa
    33721 agcagaagcc aggcgatttg cccaagaaca ggtcttttaa gaaagcgctt taacatgttg
    33781 atgcgtccat cgattcggtg acgctaatcg tgacaaagta aaattaagtg aaccttaaga
    33841 acttaatgtt ggtggtggcc ggataacctg cgctatccgg cctgttgcga taacattaac
    33901 tacacgtggt caatcttgtt taaccggcgc atccagcgga tacgggtttt tgtgaatgcg
    33961 gttgtagttc aacgcataca gcgcggtgat caccatcaac gtgacgaacg accacatcac
    34021 ttctttggcg ccggaaccga taaccgccca gatgcaatat acaaacgcga cgaaggtaat
    34081 cagcagatac agcgggcgcg ctttaccaaa gtgaccgtgg cccaatagca acagcgcggc
    34141 acaggtgtaa agataaggca ccagggtgaa gataaccgac acggaggaga ccagaccaaa
    34201 ctctttcgcg gcgttcggcg acatactgct gaactggaag atagtcatca gcacgccgac
    34261 gataagcaac ccagccactg gcgtaccggc tttattaacc cgcgcgaaga tcggcgggaa
    34321 gagaccatcg tccgccgccg cttttgcggt ttggccggca agcagcgtcc agccgccgag
    34381 agagcccagg caccccgctg ccgcacagaa ggaaacaata gcccctgcgg tatcgcccag
    34441 cgccatacgc gccgcgtcac cgaaaggcga tgctgacaca cggagcgccg cgttggggat
    34501 catccccata atcgccgttg tggagagtac atagcagacg gcggcgatca gtaccccgcc
    34561 gatggtggcg ataggcacgt tgcgtttcgg gttttttacc acaccggccg caacggaggc
    34621 gctttctacc ccgatgaatg accatagcgt gacgttcaac gtgctttgaa tcgcgccgaa
    34681 ggtattcata ccgctcacgt tccaggccgc catataggtt tcgcctttaa accagaacca
    34741 gccgaagacc gcaatcccta cgataggcac cagcgccagt acggtggcga cggcctgtac
    34801 gcgggtaatc attttcggcc cgacgatgtt cagcagaaca aaaatccaca gcaccgcgac
    34861 gcaggtaagc gttaatacca gcggatcttt cagaatcggg aagaaatagc tcagatagcc
    34921 gacgccgata acgaccatcg cgatattacc gatccagcat gccagccagt acagcacgtt
    34981 cgtttgatag cccaaaaacg gcccgaagca gcggcgtgca taggcataag aaccgccggg
    35041 actgggatct aaggacgaca ttttggcata aaccatcgac agcgccaggg cgccgatgat
    35101 agtgaccagc catccgtaga ttgcaatccc gccagtggcc gccaggttgg cagggagtaa
    35161 gaatacccct gaacccataa tattccccga taccattaag gtgacgggga ttaggcccac
    35221 tttgtgagca tcagcatccg aagacataat ttggactcct gaaaaggtga cttcgttacg
    35281 ataaattacg tcgtatcata ccccctcaga atgccgctga attatatcgg agacgggtta
    35341 tcgccaatgc tgttattatc gtgtcttatc gttgagtgta gaaaaattag gcagccgatc
    35401 gttcccgatg ttggctaaca taatgcaggg gggtcatacc ataaaactct ttaaacacgg
    35461 aaataaagta cgacgtgctg ttatacccac aaagctgtga gacttgcgag atattctttc
    35521 cgtccattaa taattggttt acggcataac gcattcggca ggtcgtgatt atttggctat
    35581 aactggtatt ctcgtttttg agctttttct ttaacaagct tggactcagg cacaggcagc
    35641 tggcaacggc gctcagattc cagtctttat gaatatcgct ctgaatgatg tggtaaacgc
    35701 tgtcactgat gcggctgcgc agcatgtgca ttaacaaaga aataaatttt ttgtggtcaa
    35761 gaaagcggga taaaacggtg aaaaggagcg cacgggtgcg ttcactaaca atttcatccg
    35821 gtgtttccat cgcgctgtag cgggcggcga ccctgaagat atccggcgtc agacaggtgg
    35881 cggtcaataa gggatcggcg ttgcgttgcc agacgggaag gtgtgagaga tctttattca
    35941 ggaattgtaa atagtcttta atattattgc gactcacttg tattactagc acgctattta
    36001 atgatgaaat gtcaataacg ttattttcac aagccagaat ggccatatga ttcgctttta
    36061 aactgattgg ctccttacca tttactcgta accatgtatc tttttcggtt aataacacta
    36121 tgcaaggctc gttgctgcaa atcctcatac ccgaactcct ggaatatgaa cata
//
LOCUS       DAJVSD010000013        36082 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.013, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000013 DAJVSD010000000
VERSION     DAJVSD010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 36082)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36082)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36082
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.013"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            42..467
                     /locus_tag="OQP62_000521"
     CDS             42..467
                     /locus_tag="OQP62_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001613336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HCS1720160.1"
                     /translation="MIMTTGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQAC
                     ANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVS
                     STISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGGR"
     gene            558..1343
                     /locus_tag="OQP62_000522"
                     /pseudo
     CDS             558..1343
                     /locus_tag="OQP62_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461838.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxo-tetronate kinase"
     gene            1340..1978
                     /locus_tag="OQP62_000523"
     CDS             1340..1978
                     /locus_tag="OQP62_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HCS1720161.1"
                     /translation="MTILAKEEHALREEMVRIAASFFQRGYATGSAGNLSLLLPDGNI
                     LATPTGSCLGNLDPQRLSKVDPQGEWLSGDKPSKEVRFHLALYRNNPCCKAVVHLHST
                     WSTALSCLEGLDPQNVIRPFTPYVVMRMGDIPLVPYYRPGDDRIARDLAALAARHQAF
                     LLANHGPVVCGENLQEAANNTEELEETAKLIFILGERPIRYLTTEEIAQLRR"
     gene            1983..2759
                     /locus_tag="OQP62_000524"
     CDS             1983..2759
                     /locus_tag="OQP62_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HCS1720162.1"
                     /translation="MPRFAADLSMMFTEVPFIERFAAAAEAGFQAVEFLFPYGFAASE
                     IKAQLSRHDLTLALFNTSAGDTAAGEWGRAALPGREHDARADIDLALEYALALECEQV
                     HIMAGVVPDGADGARYRATFIDNLRYAAGRFAAHDKRILIEALSPGVKPGYLFSSQYQ
                     ALGIAEEVDRPNVFIQLDTFHAQKVDGNLSHLIREYAGRYAHVQIASLPDRHEPDDGE
                     INYPWLFRLFDDVGYCGWIGCEYQPRNTTQEGLGWFNAWR"
     gene            2799..3749
                     /locus_tag="OQP62_000525"
     CDS             2799..3749
                     /locus_tag="OQP62_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1720163.1"
                     /translation="MQIIITGGGGFLGQKLASALLNSSLAFNELLLVDLKMPARLSDS
                     PRLRCLEADLTQPGVLENVITANTSVVYHLAAIVSSHAEDDFDLGWKVNLDLTRQLLE
                     ACRRQPQKIRFVFSSSLAVYGGTLPECVTDTTALTPRSSYGAQKAACELLVNDYTRKG
                     YVDGLALRLPTICVRPGKLNRAASSFVSAIIREPLQGETTICPVSESLRLWISSPATV
                     IHNLSLAATLPAPGEASSINLPGISVTVGEMLETLRQAGGQAARDRVTHQRDEGVEKI
                     VASWPGRIDNQRALALGFVADKRFDDIIERFRQDDMEGRS"
     gene            3746..5242
                     /locus_tag="OQP62_000526"
     CDS             3746..5242
                     /locus_tag="OQP62_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCS1720164.1"
                     /translation="MTSLPTPIIGLIVAVFVLVWLVLRTRVHALIAMLAAACIAGLLG
                     GMGIDKTLSVITSGFGTTLGSIGLVIGLGVMMGRLLEVSGAAERIAWSFIKWLGKRRE
                     EWALAITGYIVSIPIFVDSAFVILYPVAKALAKSGKRSLLTLGVALAGGLVVTHHTVP
                     PTPGPLGVAGIFNVDIGAMLLTGMALAVPCVIGIVFYAQWLDKRYPDFVPRTLNADEV
                     NAALEQYNKEKEQKDLPSLTLSLLPIVVPIVLIFLKAICSTLATVEGWSGLATHPVVQ
                     AINFVGSPVIALAISVLLAVYTLVPRMDKHTTAERLEEGLQSAGIILLVTGAGGALGA
                     ILRDSGAGQQLAEQVANLPISPILIPFIVATLVRLIQGSGTVAMITAASISAPILAQI
                     PGINMLLAAQAATMGSLFFGYFNDSLFWVVNRMMGVSDVKQQMVVWSVPTTIAWAIGG
                     TGVALINLLFGSGGSWLDPLLPIVVLAAIMLWVRWQAQGIKDKLVVKD"
     gene            complement(5284..6216)
                     /locus_tag="OQP62_000527"
     CDS             complement(5284..6216)
                     /locus_tag="OQP62_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000216314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1720165.1"
                     /translation="MTVKELAMLNLQRMSLFVAVVDSGSFTAAAAASGQTKAVVSFNI
                     RQLEKELGVTLLLRSTRRLTLTDAGVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELR
                     ITTTPEFGEQVVIPVLAQFSQRHPDLRIRHMSSSHHADLIAERFDVAIRLGSLADSRY
                     RAALISRFTILPVAAPQWLARHPVSSLESLAQAEWIIHERLPTPLRWTVTNNHGQHSR
                     LEISKAGKISVDSARSLMAFALAGSGVALLPQWLVNTALEDGTLIHVLPDYHFPRQGI
                     YAVYPDARHVSTKVRAFIDFLRSQWDCGEHAPSL"
     gene            6304..7512
                     /locus_tag="OQP62_000528"
     CDS             6304..7512
                     /locus_tag="OQP62_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1720166.1"
                     /translation="MTYRSKVAVVYLLGFFLDLINLFIASVAFPAMSVDLHTSISALA
                     WVSNGYIAGLTLIVPFSAFLSRYLGARRLIIFSLILFSVAAAAAGFADSLHSLVFWRI
                     VQGAGGGLLIPVGQALTWQQFKPHERAGVSSVVMMVALLAPACSPAIGGLLVETCGWR
                     WIFFATLPVAVLTLLLAYRWLNVASTTMASARLLHLPLLTDKLLRFAMIVYLCVPGMF
                     IGISVVGMFYLQNVAQLSPAAAGSLMLPWSIASFVAIMLTGRYFNRLGPRPLIIVGCL
                     LQAAGILLLTNVTPATSHRVLMMIFALMGAGGSLCSSTAQSGAFLTIARRDMPDASAL
                     WNLNRQLSFFLGATLLTLLLNALQRVMSLEVAYRWTFIAAAGITLLPLIYAVCLNNRQ
                     ALLCLKKERS"
     gene            7509..7893
                     /locus_tag="OQP62_000529"
                     /pseudo
     CDS             7509..7893
                     /locus_tag="OQP62_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461831.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4440 domain-containing protein"
     gene            complement(7949..10516)
                     /gene="mutS"
                     /locus_tag="OQP62_000530"
     CDS             complement(7949..10516)
                     /gene="mutS"
                     /locus_tag="OQP62_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HCS1720167.1"
                     /translation="MNESFDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYD
                     DAKRASQLLDISLTKRGASAGEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPA
                     TSKGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLS
                     EPADRETMAAELQRTNPAELLYAEDFAEMALIEGRRGLRRRPLWEFEIDTARQQLNLQ
                     FGTRDLVGFGVENASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATR
                     RNLEITQNLAGGVENTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQ
                     DTVSELQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELHAQLETVDSAPV
                     QALRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLD
                     RLEIRERERTGLDTLKVGYNAVHGYYIQISRGQSHLAPINYVRRQTLKNAERYIIPEL
                     KEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWT
                     LNYTCPTFTDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKST
                     YMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANI
                     LHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEK
                     MEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLREL
                     ESISPNAAATQVDGTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRLKSLV"
     gene            10674..11194
                     /locus_tag="OQP62_000531"
                     /pseudo
     CDS             10674..11194
                     /locus_tag="OQP62_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461829.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytoplasmic protein"
     gene            complement(11364..12020)
                     /gene="pphB"
                     /locus_tag="OQP62_000532"
     CDS             complement(11364..12020)
                     /gene="pphB"
                     /locus_tag="OQP62_000532"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase"
                     /protein_id="HCS1720168.1"
                     /translation="MELIRYADINSVLYRHIWVVGDIHGCYSLLLTRLAQLNFSPDTD
                     LLISTGDNIDRGKENLETLRLLNTSWFISVVGNHEAMALDAFETQDGNFWYVNGGYWY
                     DSVTQKDRQEATELLLTFKQRPHIIEVKTSSKKYVIAHADYPDDSYDYGKQVDIDSVL
                     WSRDRLLSSLQGNIHPIRGADTFIFGHMIVDYTTTFANQIYIDTGSFCSGNLSFFKIK
                     "
     gene            12247..12668
                     /locus_tag="OQP62_000533"
                     /pseudo
     CDS             12247..12668
                     /locus_tag="OQP62_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_025243904.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(12741..13268)
                     /locus_tag="OQP62_000534"
     CDS             complement(12741..13268)
                     /locus_tag="OQP62_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1720169.1"
                     /translation="MMFTDWHEAAIGKTHNRMNFDCGDADLNQFLQRHARQNHEKGTT
                     KTYVALDNSDVTRIHGFYSVSPASLIYAQVPGAISKGLGRYDVPVFRLGRLAVDKSMQ
                     GQGLGAQLLLSAGKRCIQAALQVGGVALLIDAKNKQVCDWYKGFGAVPLNDQPLSLLL
                     SFKTLYAALSASGRL"
     gene            complement(13265..13555)
                     /locus_tag="OQP62_000535"
     CDS             complement(13265..13555)
                     /locus_tag="OQP62_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HCS1720170.1"
                     /translation="MKTMPQIAIESNERLSLRVSTDAKKLIVRAAAIQQTNLTDFVVS
                     NVLPVAQKIVDAAERVYLTERDTQMIMEILDNPPAPNEKLLAAAFALPDMKK"
     gene            complement(13825..14025)
                     /locus_tag="OQP62_000536"
                     /pseudo
     CDS             complement(13825..14025)
                     /locus_tag="OQP62_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(14429..14872)
                     /gene="invH"
                     /locus_tag="OQP62_000537"
     CDS             complement(14429..14872)
                     /gene="invH"
                     /locus_tag="OQP62_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system invasion
                     lipoprotein InvH"
                     /protein_id="HCS1720171.1"
                     /translation="MKKFYSCLPVFLLIGCAQVPLPSSVSKPVQQPGAQKEQLANANS
                     IDECQSLPYVPSDLAKNKSLSNQNADNSASKNSAISSSIFCEKYKQTKEQALTFFQEH
                     PQYMRSKEDEEQLMTEFKKVLLEPGSKNLSIYQTLLAAHERLQAL"
     gene            15328..15978
                     /gene="invF"
                     /locus_tag="OQP62_000538"
     CDS             15328..15978
                     /gene="invF"
                     /locus_tag="OQP62_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system transcriptional
                     activator InvF"
                     /protein_id="HCS1720172.1"
                     /translation="MSFSESRHNENCLIQEGALLFCEQAVVAPVSGDLVFRSLKIEVL
                     SKLLAFIDGAGLVDTTYAESDKWVLLSPEFRAIWQDRKRCEYWFLQQIITPSPAFNKV
                     LALLRKSESYWLVGYLLAQSTSGNTMRMLGEDYGVSYTHFRRLCSRALGGKAKSELRN
                     WRMAQSLLNSVEGHENITQLAVNHGYSSPSHFSSEIKELIGVSPRKLSNIIQLADK"
     gene            15975..17663
                     /gene="invG"
                     /locus_tag="OQP62_000539"
     CDS             15975..17663
                     /gene="invG"
                     /locus_tag="OQP62_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system outer membrane ring
                     protein InvG"
                     /protein_id="HCS1720173.1"
                     /translation="MKTHILLARVLACAALVLVAPGYSSEKIPVTGSGFVAKDDSLRT
                     FFDAMALQLKEPVIVSKMAARKKITGNFEFHDPNALLEKLSLQLGLIWYFDGQAIYIY
                     DASEMRNAVVSLRNVSLNEFNNFLKRSGLYNKNYPLRGDNRKGTFYVSGPPVYVDMVV
                     NAATMMDKQNDGIELGRQKIGVMRLNNTFVGDRTYNLRDQKMVIPGIATAIERLLQGE
                     EQPLGNIVSSEPPAMPAFSANGEKGKAANYAGGMSLQEALKQNAAAGNIKIVAYPDTN
                     SLLVKGTAGQVHFIEMLVKALDVAKRHVELSLWIVDLNKSDLERLGTSWSGSITIGDK
                     LGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK
                     LIGERNVALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV
                     GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVV
                     RVFMIEPKEIVDPLTPDASESVNNILKQSGAWSGDDKLQKWVRVYLDRGQEVIK"
     gene            17660..18778
                     /gene="invE"
                     /locus_tag="OQP62_000540"
     CDS             17660..18778
                     /gene="invE"
                     /locus_tag="OQP62_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system gatekeeper InvE"
                     /protein_id="HCS1720174.1"
                     /translation="MIPGSTSGISFSRILSRQASHQDATQHTDAQQAEIQQAAEDSSP
                     GAEVQKFVQSTDEMSAALAQFRNRRDYEKKSSNLSNSFERVLEDEALPKAKQILKLIS
                     VHGGALEDFLRQARSLFPDPSDLVLVLRELLRRKDLEEIVRKKLESLLKHVEEQTDPK
                     TLKAGINCALKARLFGKTLSLKPGLLRASYRQFIQSESHEVEIYSDWIASYGYQRRLV
                     VLDFIEGSLLTDIDANDASCSRLEFGQLLRRLTQLKMLRSADLLFVSTLLSYSFTKAF
                     NAEESSWLLLMLSLLQQPHEVDSLLADIIGLNALLLSHKEHASFLQIFYQVCKAIPSS
                     LFYEEYWQEELLMALRSMTDIAYKHEMAEQRRTIEKLS"
     gene            18803..20860
                     /gene="invA"
                     /locus_tag="OQP62_000541"
     CDS             18803..20860
                     /gene="invA"
                     /locus_tag="OQP62_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein InvA"
                     /protein_id="HCS1720175.1"
                     /translation="MLLSLLNSARLRPELLILVLMVMIISMFVIPLPTYLVDFLIALN
                     IVLAILVFMGSFYIDRILSFSTFPAVLLITTLFRLALSISTSRLILIEADAGEIIATF
                     GQFVIGDSLAVGFVVFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLK
                     AGIIDADAARERRSVLERESQLYGSFDGAMKFIKGDAIAGIIIIFVNFIGGISVGMTR
                     HGMDLSSALSTYTMLTIGDGLVAQIPALLIAISAGFIVTRVNGDSDNMGRNIMTQLLN
                     NPFVLVVTAILTISMGTLPGFPLPVFVILSVVLSVLFYFKFREAKRSAAKPKTSKGEQ
                     PLSIEEKEGSSLGLIGDLDKVSTETVPLILLVPKSRREDLEKAQLAERLRSQFFIDYG
                     VRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDEVVSFGINPTIHQ
                     QGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGIQETKHMLDQ
                     LEAKFPDLLKEVLRHATVQRISEVLQRLLSERVSVRNMKLIMEALALWAPREKDVINL
                     VEHIRGAMARYICHKFANGGELRAVMVSAEVEDVIRKGIRQTSGSTFLSLDPEASANL
                     MDLITLKLDDLLIAHKDLVLLTSVDVRRFIKKMIEGRFPDLEVLSFGEIADSKSVNVI
                     KTI"
     gene            20884..21291
                     /gene="spaK"
                     /locus_tag="OQP62_000542"
     CDS             20884..21291
                     /gene="spaK"
                     /locus_tag="OQP62_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system chaperone SpaK"
                     /protein_id="HCS1720176.1"
                     /translation="MQHLDIAELVRSALEVSGCDPSLIGGIDSHSTIVLDLFALPSIC
                     ISVKDDDVWIWAQLGADSMVVLQQRAYEILMTIMEGCHFARGGQLLLGEQNGELTLKA
                     LVHPDFLSDGEKFSTALNGFYNYLEVFSRSLMR"
     gene            21288..22583
                     /gene="invC"
                     /locus_tag="OQP62_000543"
     CDS             21288..22583
                     /gene="invC"
                     /locus_tag="OQP62_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SctN family type III secretion system ATPase
                     InvC"
                     /protein_id="HCS1720177.1"
                     /translation="MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQ
                     VVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKI
                     VERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFAS
                     AGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDF
                     PSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPA
                     SVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAG
                     QGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENID
                     NDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN"
     gene            22561..23004
                     /gene="spaM"
                     /locus_tag="OQP62_000544"
     CDS             22561..23004
                     /gene="spaM"
                     /locus_tag="OQP62_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system protein SpaM"
                     /protein_id="HCS1720178.1"
                     /translation="MHSLTRIKVLQRRCTVFHSQCESILLRYQDEDRGLQAEEEAILE
                     QIAGLKLLLDTLRAENRQLSREEIYTLLRKQSIVRRQIKDLELQIIQIQEKRSELEKK
                     REEFQKKSKYWLRKEGNYQRWIIRQKRHYIQREIQQEEAESEEII"
     gene            23004..24014
                     /gene="spaN"
                     /locus_tag="OQP62_000545"
     CDS             23004..24014
                     /gene="spaN"
                     /locus_tag="OQP62_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system protein SpaN"
                     /protein_id="HCS1720179.1"
                     /translation="MGDVSAVSSSGNILLPQQDEVGGLSEALKKTVEKHKTEYSGDKK
                     DRDYGDAFVMHKETALPVLLAAWRHCAPAKSEHHNGNVSGLHHNGKGELRIAEKLLKV
                     TAEKSVGLISAEAKVDKSAALLSPKNRPLESVSGKKLSADLKAVESVSEVTDNATGIS
                     DDNIKALPGDNKAIAGEGVRKEGAPLARDVAPARMAAANTGKPDDKDHKKVKDVSQLP
                     LQPTTIADLSQLTGGDEKMPLAAQSKPMMTIFPTADGVKGEDSSLTYRFQRWGNDYSV
                     NIQARQAGEFSLIPSNTQVEHRLHDQWQNGNPQRWHLTRDDQQNPQQQQHRQQSGEED
                     DA"
     gene            24014..24925
                     /gene="spaO"
                     /locus_tag="OQP62_000546"
     CDS             24014..24925
                     /gene="spaO"
                     /locus_tag="OQP62_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system protein SpaO"
                     /protein_id="HCS1720180.1"
                     /translation="MSLRVRQIDRREWLLAQTATECQRHGREATLEYPTRQGMWVRLS
                     DAEKRWSAWIKPGGWLEHVSPALAGAAVSAGAEHLVVPWLAATERPFELPVPHLSCRR
                     LCVENPVPGSALPEGKLLHIMSDRGGLWFEHLPELPAVGGGRPKMLRWPLRFVIGSSD
                     TQRSLLGRIGIGDVLLIRTSRAEVYCYAKKLGHFNRVEGGIIVETLDIQHIEEENNTT
                     ETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLL
                     GNGELVQMNDTLGVEIHEWLSESGNGE"
     gene            24915..25589
                     /gene="spaP"
                     /locus_tag="OQP62_000547"
     CDS             24915..25589
                     /gene="spaP"
                     /locus_tag="OQP62_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system export apparatus
                     protein SpaP"
                     /protein_id="HCS1720181.1"
                     /translation="MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQ
                     QIPSNMTLNSVALLLSMFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDY
                     LIKYSDRELVQFFENAQLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFK
                     IGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQ
                     YMDIAT"
     gene            25615..25875
                     /gene="spaQ"
                     /locus_tag="OQP62_000548"
     CDS             25615..25875
                     /gene="spaQ"
                     /locus_tag="OQP62_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system export apparatus
                     protein SpaQ"
                     /protein_id="HCS1720182.1"
                     /translation="MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQE
                     QTLPFGIKLLGVCLCLFLLSGWYGEVLLSYGRQVIFLALAKG"
     gene            25879..26670
                     /gene="spaR"
                     /locus_tag="OQP62_000549"
     CDS             25879..26670
                     /gene="spaR"
                     /locus_tag="OQP62_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system export apparatus
                     protein SpaR"
                     /protein_id="HCS1720183.1"
                     /translation="MLYALYFEIHHLVASAALGFARVAPIFFFLPFLNSGVLSGAPRN
                     AIIILVALGVWPHALNEAPPFLSVAMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCII
                     DNQRGATLSSSIDPANGIDTSEMANFLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPM
                     NECTPSLPPLLTFINQVAQNALVLASPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTV
                     KSGIAVLIMLLYFSPVLPDNVPRLSFQATGLSSWFYERGATHVLE"
     gene            26657..27727
                     /gene="spaS"
                     /locus_tag="OQP62_000550"
     CDS             26657..27727
                     /gene="spaS"
                     /locus_tag="OQP62_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system export apparatus
                     protein SpaS"
                     /protein_id="HCS1720184.1"
                     /translation="MSSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVS
                     YGSFNEFMGIIKIIIADNFDQSMADYSLAVFGIGLKYLIPFMLLCLVCSALPALLQAG
                     FVLATEALKPNLSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEI
                     FSQLNGNVVDIAVIWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKR
                     EMKEQEGNPEVKSKRREVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIP
                     MISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLV
                     WLEEVENAGKDVIQPQENEVRH"
     gene            27865..28362
                     /gene="sicA"
                     /locus_tag="OQP62_000551"
     CDS             27865..28362
                     /gene="sicA"
                     /locus_tag="OQP62_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SycD/LcrH family type III secretion system
                     chaperone SicA"
                     /protein_id="HCS1720185.1"
                     /translation="MDYQNNVSEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHA
                     YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK
                     NDYRPVFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALKTAETEQHS
                     EQEKE"
     gene            28365..30146
                     /gene="sipB"
                     /locus_tag="OQP62_000552"
     CDS             28365..30146
                     /gene="sipB"
                     /locus_tag="OQP62_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system needle tip
                     complex protein SipB"
                     /protein_id="HCS1720186.1"
                     /translation="MVNDASSISRSGYTQNPRLAEAAFEGVRKNTDFLKAADKAFKDV
                     VATKAGDLKAGTKSGESAINTVGLKPPTDAAREKLSSEGQLTLLLGKLMTLLGDVSLS
                     QLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAA
                     AKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDATVKAGTDAKA
                     KAEKADNILTKFQGTANAASQNQVSQGEQDNLSNVARLTMLMAMFIEIVGKNTEESLQ
                     NDLALFNALQEGRQAEMEKKSAEFQEETRKAEETNRIMGCIGKVLGALLTIVSVVAAV
                     FTGGASLALAAVGLAVMVADEIVKAATGVSFIQQALNPIMEHVLKPLMELIGKAITKA
                     LEGLGVDKKTAEMAGSIVGAIVAAIAMVAVIVVVAVVGKGAAAKLGNALSKMMGETIK
                     KLVPNVLKQLAQNGSKLFTQGMQRITSGLGNVGSKMGLQTNALSKELVGNTLNKVALG
                     MEVTNTAAQSAGGVAEGVFIKNASEALADFMLARFAMDQIQQWLKQSVEIFGENQKVT
                     AELQKAMSSAVQQNADASRFILRQSRA"
     gene            30174..31403
                     /gene="sipC"
                     /locus_tag="OQP62_000553"
     CDS             30174..31403
                     /gene="sipC"
                     /locus_tag="OQP62_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system needle tip
                     complex protein SipC"
                     /protein_id="HCS1720187.1"
                     /translation="MLISNVGINPAAYLNNHSVENSSQTASQSVSAKDILNSIGISSS
                     KVSDLGLSPTLSAPAPGVLTQTPGTITSFLKASIQNTDMNQDLNALANNVTTKANEVV
                     QTQLREQQAEVGKFFDISGMSSSAVALLAAANTLMLTLNQADSKLSGKLSLVSFDAAK
                     TTASSMMREGMNALSGSISQSALQLGITGVGAKLEYKGLQNERGALKHNAAKIDKLTT
                     ESHSIKNVLNGQNSVKLGAEGVDSLKSLNMKKTGTDATKNLNDATLKSNAGTSATESL
                     GIKNSNKQISPEHQAILSKRLESVESDIRLEQNTMDMTRIDARKMQMTGDLIMKNSVT
                     VGGIAGASRQYAATQERSEQQISQVNNRVASTASDEARESSRKSTSLIQEMLKTMESI
                     NQSKASALAAIAGNIRA"
     gene            31473..32495
                     /gene="sipD"
                     /locus_tag="OQP62_000554"
     CDS             31473..32495
                     /gene="sipD"
                     /locus_tag="OQP62_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system needle tip
                     complex protein SipD"
                     /protein_id="HCS1720188.1"
                     /translation="MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTD
                     IISLSQAATKIQQAQQTLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQN
                     ENLRSTFSAPTSALFSASPMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVY
                     TDFYQAFSDILSKMGGWLSPGKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQ
                     TGSGMTTATKAEAEQWIKELNLPDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSA
                     LELDNAKYQAWQSGFKAQEENLKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETA
                     KSFLQG"
     gene            32514..34571
                     /gene="sipA"
                     /locus_tag="OQP62_000555"
     CDS             32514..34571
                     /gene="sipA"
                     /locus_tag="OQP62_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system effector SipA"
                     /protein_id="HCS1720189.1"
                     /translation="MVTSVRTQPPVIMPGMQTEIKTQATNLAANLSAVRESATATLSG
                     EIKGQQLEDFPALIKQASLDALFKCGKDAEALKEVFTNSNNVAGKKAIMEFAGLFRSA
                     LNATSDSPEAKTLLMKVGAEYTAQIIKDGLKEKSAFGPWLPETKKAEAKLENLEKQLL
                     DIIKNNTGGELSKLSTNLVMQEVMPYIASCIEHNFGCTLDPLTRSSLTQLVDKAAAKA
                     VEALDMCHQKLTQEQGTSVGREARHLEMQTLIPLLLRNVFAQIPADKLPDPKIPEPAA
                     GPVPDGGKKAEPTGINININIDSSNHSVDNSKHINNSRSHVDNSQRHIDNSNHDNSRK
                     TIDNSRTFIDNSQRHGESHHSTNSSNVSHSHSRVDSTTHQTETAHSASTGTIDHGIAG
                     KIDVTAHATAEAVTNSSSESKDGKVVTSEKGTTGETTSFDEVDGVTSKSIIGKPLQAT
                     VHGVDDNKQQSQTAEIVNVKPLASQLAGVENVKIDTLQSDSTVITGNKAGTTDNDNSQ
                     TDKTGPFSGLKFKQNSFLSTVPSVTNMHSIHFNAREAFLGVIRKALEPDASTPFPVRR
                     AFDGLRGEILPNDTIKSAALKAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIAL
                     QFAREAGLTRQKGETDYVLSNVLDGLIGDGSWRAGPAYESYLNKPGVDRVITTVDGLH
                     MQR"
     gene            34590..34838
                     /locus_tag="OQP62_000556"
     CDS             34590..34838
                     /locus_tag="OQP62_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HCS1720190.1"
                     /translation="MNMDIEARVKKVITSCIAVDVDSINGQTHLVEDLYADSLDLIDI
                     VFGLSEEFDISCNENDLPDMTTFADICRVVKKSLESRV"
     gene            34882..35142
                     /locus_tag="OQP62_000557"
     CDS             34882..35142
                     /locus_tag="OQP62_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_449260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720191.1"
                     /translation="MKIITHVVPGSGMAAIYDDIADSSRFVIKGKLRHVENDPKELLI
                     CVPMRSEWLFYWIKGEKYCARRWARKNIKTLCNQIKFEEAIL"
     gene            35169..35561
                     /gene="sicP"
                     /locus_tag="OQP62_000558"
     CDS             35169..35561
                     /gene="sicP"
                     /locus_tag="OQP62_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone SicP"
                     /protein_id="HCS1720192.1"
                     /translation="MQAHQDIIANIGEKLGLPLTFDDNNQCLLLLDSDIFTSIEAKDD
                     IWLLNGMIIPLSPVCGDSIWRQIMVINGELAANNEGTLAYIDAAETLLFIHAITDLTN
                     IYHIISQLESFVNKQEALKNILQEYAKV"
     gene            35548..>36082
                     /locus_tag="OQP62_000559"
     CDS             35548..>36082
                     /locus_tag="OQP62_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461799.1"
                     /note="GTP-activating protein/tyrosine phosphatase;
                     facilitates bacterial survival in host cells; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pathogenicity island 1 effector protein StpP"
                     /protein_id="HCS1720193.1"
                     /translation="MLRYDERKLNNLTLSSFSKSGVSSDTRLYIAKENTDKAYVAPEK
                     FSSKVLTWLGKMPLFKNTEVVQKHTENIRVQNQKILQTFLQALTEKYGEKAVNNALYM
                     SSINMNKPLTQRLVVQITECVKGADGGFINLIKNKDNVGVMNAALVIKGGDTKVTEQN
                     NDVGAESKQPLLDIALKG"
BASE COUNT         9111 a         8133 c         9670 g         9168 t
ORIGIN      
        1 attcacataa caaaacataa tatcacgtaa attaacatgg agtgataatg acaacaggaa
       61 ctgattttca tgtcggcatt gtggggcttg gctcaatggg aatgggcgct gcgcgttcat
      121 gcctgcgcgc cgggctttcc acatgggggg ccgatcttaa cccgcaagcg tgcgcgaatc
      181 tgctcgctga aggggcttgt ggggctgccg ccagcgccag ggagttcgcc ggcgtcgtgg
      241 atgcgttagt cattctggtc gtcaatgccg cccaggtcag acaggtgtta ttcggtgagg
      301 atggcgtcgc ccatctgatg aaacccggaa gcgcggtgat ggtttcgtct acgatctcaa
      361 gcgccgacgc gcaagagatc gccgcggcgt tgacggcatt gaatcttaac atgctggatg
      421 cgccggtttc cggcggcgcg gtaaaagcgg cgcagggcgg acggtgatgg cctccgggcg
      481 cgaggcggcg tttacccgcc tgaagcctgt gctggacgcc gttgccagca acgtttatcg
      541 catcagcgat acaccgggcg caggcgcaag ggcgctgcgg cgttattccg gctcagacgc
      601 ttgatgaagg cgttgccgcg acccgtgcgg cgctgtcgcg tttacagcag gaaggatatc
      661 gctacgcggt acttgacgcg ctcaatgagc ggcacctgga aatccagggc gaggttttgc
      721 gtgatgcccc gctggtgacc ggcggttccg ggctggcaat ggggctggcg cgtcagtggg
      781 cgaagcacgg cgtttctcag gcccgttccg caggctatcc gctgagcggt cgcgcggtag
      841 tgctttccgg ttcctgttcg caaatgacga atcagcaggt ggctttctat cgacaacatg
      901 ctcccacacg cgacgttgac gtggcgcgct gcctgtcatc cgaggcgcgc gaggcctacg
      961 ccgaagcgct ggcgcagtgg gtgttcagtc aggacagcga actggcgcca atgattagcg
     1021 ccaccgcctc cacgcaggcg ctggctgcca tccagcagca atatggcgct accgaagcca
     1081 gctatgcggt agaggcgctc ttttccctgc tggccgctcg cttagcggaa ggcggtatca
     1141 cccggtttat tgtggcgggc ggcgaaacct cgggcgtggt gacgcaaagc ctcggtatta
     1201 ccggtttcca cattggaccg tgcatttcac ccggcgtgcc gtgggtcaac gcgctccatg
     1261 cgccagtctc gctggcgcta aagtcaggta attttggcga tgaatccttt ttcatccgcg
     1321 ctcaaaggga gtttcaggta tgacgatact ggcaaaagaa gagcacgctt tgcgagaaga
     1381 gatggtcagg atagccgcct cgtttttcca gcgcggctat gccaccggct cggcaggcaa
     1441 cctctcgctg ttactgccgg acggcaatat tctggcgacg cccaccggtt cgtgtctggg
     1501 taatctcgac ccgcagcggc tatccaaagt ggacccgcaa ggcgaatggc tcagcggcga
     1561 taaaccgtct aaagaggtgc gttttcatct ggcgttgtat cgcaataacc cttgctgcaa
     1621 ggccgtggta catctgcaca gcacctggtc aacggcgctt tcctgtctcg aagggctgga
     1681 cccgcaaaat gtgattcgcc cgtttacccc ctatgtggtg atgcggatgg gagacattcc
     1741 gctggttccc tactatcgcc cgggggatga ccgaattgct cgcgatttgg ctgcgctggc
     1801 ggcccggcat caggcctttt tactggctaa tcatgggccg gtcgtgtgcg gggagaattt
     1861 gcaggaagcc gctaataata ccgaggagct ggaagagacg gcaaagctga tttttatcct
     1921 tggcgaacgc ccgattcgtt atttaaccac cgaagaaatt gcgcagttaa ggagataacc
     1981 cgatgccgcg ttttgccgcc gatttgtcga tgatgtttac cgaagtgccg tttatcgagc
     2041 gttttgccgc tgctgccgaa gccggttttc aggccgttga gtttctgttc ccctacggct
     2101 ttgccgccag cgagattaaa gcccagctat cgcgtcatga tctgacgctg gcgctgttta
     2161 atacttcggc gggtgatacc gcggcgggcg agtggggacg tgccgcgcta ccggggcgcg
     2221 aacacgacgc gcgcgccgat attgatctgg ctctggaata cgctctggcg ctggaatgcg
     2281 agcaggttca catcatggcg ggcgtcgtgc cggatggcgc tgatggcgca cgttatcgcg
     2341 ccacgtttat cgataatttg cgttatgccg ccggccggtt tgccgcccac gataaacgta
     2401 ttttgatcga agcgctgagt cccggcgtta aacccggcta cctcttttcc agccaatatc
     2461 aggcgctggg catcgcagaa gaggttgacc gcccaaatgt attcatccag ctcgacactt
     2521 tccacgcgca aaaagtggat ggcaatttga gtcacctgat tcgcgagtac gcgggccgct
     2581 atgcccatgt acaaatcgcc tcgctaccgg acagacatga accggatgat ggcgagatca
     2641 actacccgtg gctgttccgg ctgttcgatg acgtaggtta ttgcggctgg ataggctgcg
     2701 aataccaacc acggaatacc actcaggagg ggcttggctg gtttaacgcc tggcgctaac
     2761 cctgaactac cctacacaac aataaagagg acatccggat gcagattatc attaccggcg
     2821 ggggcggctt tttaggccag aaactcgcaa gcgccttatt aaactcatcg ctggcgttta
     2881 acgaactgct tcttgttgat ttaaaaatgc ctgcacggtt atcagattcc cctcgtttac
     2941 gctgcctgga agctgactta acccagccgg gcgtactgga gaatgtgatt accgctaata
     3001 cctctgttgt ttatcatctc gctgcgattg tcagcagtca tgcggaagac gatttcgatc
     3061 tgggatggaa agttaacctg gatcttaccc gccagttact tgaggcgtgt cgtcggcaac
     3121 cgcagaaaat tcgttttgtc ttctccagct cgcttgccgt ttatggcggt acgctgccgg
     3181 aatgcgtcac cgataccacc gcgctcacgc cgcgctcgtc ttatggcgcg cagaaggccg
     3241 cctgtgaact gttggtcaac gactataccc gcaaaggcta tgtggatggg ctggcgctgc
     3301 gtttgccgac gatctgtgtt cgcccgggta aactaaaccg cgccgcttct tcttttgtca
     3361 gcgcgattat tcgtgaaccg ttgcagggcg agacgaccat ctgtccggtg tcggaaagtt
     3421 tgcggctgtg gatttccagc ccggcgacgg tgatccataa cctgtcgctg gccgcaacgt
     3481 tacccgcgcc tggcgaggcg agcagcatca acttacccgg gatcagcgta accgtgggcg
     3541 agatgctgga aacgttgcgt caggcgggcg gtcaggcggc gcgcgatcgg gttacgcatc
     3601 agcgcgacga aggcgtcgag aaaattgtcg cctcctggcc gggacgtatc gataaccagc
     3661 gtgcgctggc gttaggtttt gtcgccgata aacgcttcga tgacattatc gaacgctttc
     3721 gacaagatga tatggagggg aggtcatgac aagtttaccg accccaatta tcggcctgat
     3781 cgttgccgtt ttcgtgctgg tatggctggt gttacgcacc cgtgttcatg cgctgatcgc
     3841 gatgctggcg gcggcctgca tcgccggtct gttgggggga atgggcattg ataaaacgct
     3901 ctctgtcatc accagcggat tcggtacgac gctgggcagc attggcctgg tgattggtct
     3961 cggcgtaatg atggggcgct tgctggaggt ttccggcgcg gcggagcgta tcgcctggag
     4021 ctttatcaaa tggctgggga aacgccgtga agagtgggcg ctggcgatca cgggttatat
     4081 tgtcagcatc cccattttcg tcgattccgc ttttgtcatt ctttatccgg tggcgaaagc
     4141 gctggcgaaa agcggtaaac gttcgctact gacgctgggc gtcgcgctgg cgggcgggct
     4201 ggtggtcact caccatacgg tacctcccac gcccggcccg ctgggggtag ccgggatttt
     4261 taacgtcgac atcggtgcaa tgttattgac cgggatggcg ctggcggtgc cctgtgtgat
     4321 cggcattgtg ttctatgcgc agtggctgga taaacgctac cctgatttcg tgccgcgcac
     4381 gctgaacgcc gatgaagtta atgccgcgct ggagcagtac aataaagaga aagagcaaaa
     4441 ggatctgccg agcctgacgc tctctctgct gcctattgtg gtgccgatcg tgctgatctt
     4501 cctgaaggct atctgttcca ccctcgccac tgtagaagga tggtccggcc tggcgacgca
     4561 tccggtggta caggcaatca actttgtggg aagtccagtg atcgcgttgg ccatcagcgt
     4621 tctgctggcg gtgtatacgc tggtgccgcg catggataaa cataccaccg cagagcgtct
     4681 ggaagaaggc ttgcaaagcg ccgggattat cttactggtc acgggcgctg gcggcgcgtt
     4741 gggcgcgatc ctgcgcgaca gcggcgcggg gcaacagctg gcggagcagg ttgccaacct
     4801 gccgatctcg ccgatcctga tcccgtttat cgtggcgacg ctggtacgtc tgattcaggg
     4861 atcggggacg gtggcgatga tcactgccgc ctcgatttcc gcgccgatcc tggcgcagat
     4921 ccccggcatc aatatgttgc ttgccgctca ggccgcaacg atggggtcgc tgtttttcgg
     4981 ctacttcaac gatagcctgt tctgggtggt taaccgcatg atgggcgtct ctgatgtcaa
     5041 acagcagatg gtggtttggt ctgtaccgac gaccattgcc tgggcgattg gcggcaccgg
     5101 cgtggcgctg attaacctgc tgtttggttc cggcggcagt tggctcgatc cgttactgcc
     5161 aatcgtcgtt ctggcggcaa ttatgctgtg ggtgcgttgg caggcgcagg ggatcaaaga
     5221 caaactggta gttaaggatt aagacggtat tatccgtccg ggagcgcaat gctcccgggc
     5281 tggctacaat gatggggcgt gctccccgca atcccattgc gaacgtaaaa aatcaataaa
     5341 tgcgcgtact tttgtcgata catggcgggc gtctggataa acggcataaa tgccctgacg
     5401 gggaaaatga tagtcgggta acacgtgaat taacgttcca tcctccagtg cggtgttgac
     5461 taaccattgc ggcagtaatg cgacgccgct tcccgcgaga gcgaaggcca tcagcgagcg
     5521 cgcgctgtcg acagaaattt tgccggcttt gcttatctcc aggcgtgagt gttggccatg
     5581 attattcgtt actgtccacc gtagcggcgt aggtaatcgc tcatgaataa tccattccgc
     5641 ctgggccaac gactccagtg acgacacggg gtggcgggcg agccactgcg gcgcggcgac
     5701 cggcagaatg gtaaagcggg atatcagcgc ggcgcgatag cgggagtccg ccagcgagcc
     5761 aagccgaatc gccacatcaa agcgctcggc aattaaatcg gcatgatgtg atgaggacat
     5821 atgccgaata cggagatcgg gatggcgctg actaaactgc gccagtaccg gaatgaccac
     5881 ctgttcgcca aactcgggcg tagtggtaat acgtaactcg ccgcccagcc cactatggct
     5941 ggcacgcact tcatcctgca aatttttcgc tgcattgagt aaattcacgc ctttttggta
     6001 aaagaggacg ccggcgtctg tgagcgtcag tcgtcgggtg gaacgtagca gtaacgttac
     6061 gccaagctct ttttcaagct gccgaatatt aaaactcact accgcttttg tttggcccga
     6121 tgcggcggcc gccgccgtga agctgccgct atctaccacg gcgacaaaca gcgacatacg
     6181 ctgcaaattg agcatggcga gctcctttac tgtcaaaatt attttgacag tatatcgttg
     6241 aagcgcggac ttatctggct ttctccggac ggctacatta gcgcctctga cggaggatgc
     6301 ataatgacgt atcgcagtaa agtggcagtg gtttacctgc tcggcttctt tcttgatctg
     6361 attaatctgt ttattgccag cgtggctttt cctgcgatgt ccgtggatct gcatacgtcc
     6421 atatcggcgc tggcatgggt gagtaacggt tatatcgcag gattaacgct gatcgttccg
     6481 tttagcgcgt ttctttcacg ttatctcggc gcacgacggc tgatcatatt ttcgctcatt
     6541 ctgtttagcg ttgccgccgc tgccgcaggt tttgccgatt ccttacacag ccttgttttc
     6601 tggcgtattg tgcagggggc gggcggtggc ttattgatcc cggttggtca ggcgttaacc
     6661 tggcaacagt ttaaaccgca tgaacgcgct ggcgtgtcat cggtcgtcat gatggtggcg
     6721 ctactggcgc cggcatgttc gcctgcgatt ggcgggctgc tggtggaaac gtgcggctgg
     6781 cgctggatat tttttgccac gctgccggtg gccgttctca ctttattgct cgcttatcgt
     6841 tggctgaacg tcgcttcgac gacaatggcg tcagcaagat tgctccatct gccgttgttg
     6901 acggacaagc tgctgcgttt tgccatgatc gtctatctgt gtgtgccggg tatgttcatt
     6961 ggtatcagcg tggtcgggat gttttatcta cagaacgtcg cgcagctatc gcctgcggcg
     7021 gcggggtcgc tgatgctccc ctggtcgatc gcttcatttg tcgccattat gcttaccgga
     7081 cgttacttca atcggcttgg gccgcgtccg ctgattatcg tcggctgtct tcttcaggct
     7141 gcagggatac tgcttttaac taacgttacg cctgcgacat cgcatcgtgt actgatgatg
     7201 atattcgcct taatgggcgc tggcggcagt ttgtgcagca gtaccgcgca gagtggcgct
     7261 ttcctgacta ttgctcgccg ggacatgcct gacgccagcg cgctatggaa tcttaatcgt
     7321 cagcttagct ttttccttgg cgcgacgctg ttgacgctgc tgttaaacgc gctccagcgc
     7381 gttatgtcgc ttgaggttgc ttatcgctgg acctttattg ccgccgccgg tatcaccctg
     7441 ctgcccctta tttacgctgt ctgtctaaac aatagacagg cgcttctgtg cctgaaaaag
     7501 gaaagatcat gaatccatat aaagaagaaa ttattcatgc ccatgcggcg attgagaact
     7561 ggcttagtaa gggggggggg gggtagcctg gaggcgttga tagcgcgttt tgctgttgat
     7621 tttacgatga taacgccagg aggtatttgt ctggattatc cggcgctggg cgcttttttc
     7681 caggcgcagc gcgcgtgtcg cccggggctg gttatcatgg ttgagcacat tgatcttgtg
     7741 gcggagtggc cggaaggcgc cgcgctgcgt tatcgtgagc gccagcaact gccgggccag
     7801 gccgagacgg tacgctggtc gacggtcatt ttaaaaaggg aaagaggacg gatagtctgg
     7861 cgtcatttac atgaaacgac agccacagcc tgaaaagcct gttccggcgc gcagacccga
     7921 tagcgcggcg ctatcgggtc tgacacgttt acaccagact tttcagccga tagatccact
     7981 ccagcgcctg gcgtggcgtc agggagtccg gatcgagatt ctccagcgct tcaacggcgg
     8041 gcgatgtctc ctccggggcg gcaagcaacg acatttgcgt gccgtccacc tgcgttgccg
     8101 ccgcattggg cgagatgctt tccagctcgc ggagtttttg gcgcgcgcgt ttgatgactt
     8161 ctttagggac gcccgcaagc gccgcgaccg ccaggccata gctcttactt gccgcgccgt
     8221 cctgcacgct gtgcataaac gcgatagtat cgccgtgttc cagcgcatcc aggtggacgt
     8281 tcgccacgcc ttccattttc tccggtaatt gggtcagctc gaagtagtgg gtagcgaaca
     8341 gcgttaacgc tttaatctta ttcgcgagat tctccgcgca ggcccaggcc aatgacagcc
     8401 cgtcatacgt ggaggtaccg cgcccgattt catccatcaa taccagactg ttttccgtcg
     8461 cattatgcag aatgttcgcg gtttcggtca tctccaccat aaaggtcgaa cgcccggaag
     8521 ccaggtcgtc cgctgcgccg acgcgggtaa aaatacggtc gatggggccg atttccacgt
     8581 tttgcgccgg aacgtaactg ccgatatagg ccagcagggc gatcaatgcc gtttgtcgca
     8641 tataggtact tttaccgccc atattggggc cggtaatgat caacatccgg cgctgcggcg
     8701 acagattgag cgggttagcg ataaacggct cattcagtac ctgttcaacc accgggtggc
     8761 gaccttcggt aatacggata ccgggtttat cggtaaatgt tgggcaggtg taattcagcg
     8821 tccaggcgcg ttcggccagg ttaaccagca catccagctc cgccagagcg ttggcgctct
     8881 gctgtaaatc ggccagatgc ggcaacagca gatcaaacaa ttcgtcatat agctgttttt
     8941 ccagcgccag tgctttgcct ttcgaggtca gaactttatc ttcgtactct ttaagctcag
     9001 gaataatgta gcgttcggca tttttcagcg tctggcgacg cacataattg atgggcgcca
     9061 gatggctttg accacggcta atctgaatgt aataaccatg taccgcgtta tagccgactt
     9121 tcagcgtatc cagcccggta cgctcgcgtt cgcgaatttc cagacgatcg agataatcgg
     9181 tggcgccgtc cgccagcgcg cgccattcat ccagctcttc atggtagccg ggcgcaataa
     9241 cgccgccgtc gcggaccagt accggcggcg cgtcaataat ggcgcgctcc aggaggtcgc
     9301 gcagttcggc gaaatcgccc atttttttac gcaacgcctg taccggcgcg ctgtcaacgg
     9361 tttcaagctg agcgtgcaat tccggcagct gctggaaggc gtgacgcatt cgggcgagat
     9421 cgcgcggacg cgcggtgcgc agcgccagac gcgcaaggat gcgctccaga tcgccgacct
     9481 gacgcagcac cggttgcagt tcgctgacgg tatcctgcaa ggcgccgatg gtctgctggc
     9541 gttcacgtaa tatgtcggta tttcgtaccg gcatatgcag ccagcgttta agcattcggc
     9601 tacccattgg cgtcacggta cagtcaagca ccgcggcgag ggtattttcg acaccgccgg
     9661 ccaggttctg ggtaatttcc agattgcggc gggtcgcggc atccataatg atgctgtcct
     9721 gctggcgttc catcgtaatg gaacgaatat gcggcaggga ggtgcgctgg gtatctttta
     9781 cgtactgtaa caggcagcct gccgcacata atccacgcga ggcattttcg acgccgaaac
     9841 cgaccagatc ccgcgtaccg aattgcagat ttaactgctg gcgggcggta tcaatctcaa
     9901 actcccacaa cgggcgacgg cgcagacccc ggcgtccctc tattaacgcc atttcagcaa
     9961 aatcttcggc atacaacagt tcggcgggat tggtgcgctg cagctctgcg gccatcgttt
    10021 cacggtcggc gggttcgctc agacgaaagc gcccggagct gatatccagc gtggcgtaac
    10081 cgtagccttt accatcctgc cagatagccg ccagcaggtt atcctgacgc tcctgtaaca
    10141 gggcttcatc gctgatggtg ccaggcgtaa cgatacgcac gactttacgt tcaacgggac
    10201 ctttgctggt ggccggatcg ccaatctgtt cgcaaatagc gacggattcg ccctgattga
    10261 ccagtttcgc gaggtagttt tctacggcgt ggtgcgggat acccgccata gggataggtt
    10321 cgccagccga tgcgccgcgt ttggtcagcg aaatatcgag caactgcgac gcacgctttg
    10381 cgtcgtcata aaacagctcg taaaagtctc ccatacgata aaagagcagg atctccggat
    10441 gctgggcttt cagcttgaga tactgctgca tcatgggggt gtggttggag aagtccttat
    10501 caaatgactc attcatattg attttactcg ttttttattc tttcaagtgc tcatgtggcc
    10561 ataggtaaaa cccctataaa ctcacataaa cccataaatt tgtagctcat ctgtagccta
    10621 aaatgtgaca ggttacattc tcatcattcc tggactacaa caggggtgat actttgaaaa
    10681 caactctcag ccagcctttc attatcaaca agttaagtat caatgttaag tctgcgctca
    10741 gtcgctctgg aaaaatcgtt ttcgaagcta acccagctca aaaactctac attgttttcg
    10801 atgaccacag acaagctcct gctggtttcg gggtaaaagc cagtttgacg aaaaaaacct
    10861 acgtaatcca gcgaagagta gcctcgtcag atcgtaatgt cagtgagggt aggaagccaa
    10921 gttctgtctt gaaagtaaaa gttgaaaatg tgttcgattt tccaaatatt gacgaaacaa
    10981 ggcaatctgc aggcaattag ttcagaccat gttcgcaaca aagagaaatc acaacaaaat
    11041 taagagggaa acggatgctt ccgaactcaa gaccgtaatc aagattgtgt tgcatgaagg
    11101 caagccgatc catttcgcca ccacggttat tgtgctttat tccgataggt atcttgagct
    11161 gtgcgatctt tactcttctc aggcgatcga gtaactacct gcgtcggatt acggcttcgt
    11221 tttttggtct gcgatcttaa tgatgaaatg ggcggaaaaa cgcgaaattt agacgctatt
    11281 acgaatgagc aatggtactt attgaaggct atatcattgc cataatgcag ggagggttaa
    11341 tattatataa ttctatttcc agactacttt attttaaaaa aagacagatt gcctgaacag
    11401 aaagaaccgg tgtcaatgta gatttgattg gcgaatgttg ttgtgtaatc aacaatcata
    11461 tggccgaaga tgaaagtatc cgcaccgcgt attggatgga tattcccctg taacgaacta
    11521 agcagacgat cgcgtgacca tagaacgcta tcaatatcaa cttgcttccc ataatcgtag
    11581 ctgtcatctg gataatcggc atgggcaatc acgtacttct ttgaggacgt tttaacctct
    11641 atgatgtgag gacgctgctt aaaagttagt aatagctcag tggcttcttg cctgtctttt
    11701 tgggtgaccg agtcgtacca gtaaccaccg tttacatacc agaaattgcc atcctgtgtt
    11761 tcaaaagcgt caagcgccat agcttcatga ttacccacta cagaaataaa ccatgaggta
    11821 tttaacagtc tcagtgtttc aaggttttct tttcctcgat caatgttatc tccagtggag
    11881 atcaagagat cggtatcagg agagaaattt aattgagcca gtctggttaa caataaggag
    11941 taacatccat gaatatcacc aacgacccaa atgtggcgat agagaacgct gttgatgtca
    12001 gcataacgaa ttaattccat gatgttccta tagcacaatt ttggaggctg gtattataac
    12061 aaagaagtag ggtaatatta atttttattg tttaaaatac acagttatta aaatagccta
    12121 caagctagaa atgaacagat aatatatatt ttatgaatcg gttaattaaa gtagacgatg
    12181 tgcttgaaag atgcgctatt tctcgcgcaa cactttcctg attaattgca aaggcatact
    12241 ttcccgctca gcggcacgac agatgcgcag gcactgccgg ggctgattag ccagactcac
    12301 cgtaaaatca gggaagcctc ggctgacggc gcttatgaca cgcgctattg ccatgatgtg
    12361 ttattaatca ggccgctaat cccgccacga agcggtgcgc gatactggcc gggcaagtac
    12421 catgagcgta accacgcggt ggcgaatcaa catctgagcg gcagcaatga ggtctggaaa
    12481 agaaagtggg ctatcaccgt tgttcagtag tggaaacagc gatgttccgt ctcaaaacct
    12541 tgctgggcgg ccatctgagc ctgcggaact atgacgcgca ggtgggtgaa gcgatggcga
    12601 tggcgatggt caaagcgctg aaccggatga cgttgttggc aatgctgacc agcgtcaggc
    12661 tcgtataacg agtgctccgg tgggagtcct gtatccttat cgttggccga ttctgaatta
    12721 ttcaacaaag cctcatgttg tcataaccta ccagatgcag ataaagcagc ataaagcgtt
    12781 ttaaacgaca gcaacaagga aaggggttga tcgtttaatg gtactgcgcc aaatcctttg
    12841 taccagtcgc agacctgttt atttttggca tcaataagca gggctacgcc accgacctgc
    12901 aaagccgcct gtatgcaacg ctttccggca gataacaaaa gttgtgctcc cagcccttgc
    12961 ccctgcatag atttgtctac ggctaaacga cccagacgaa acactggcac atcatatctc
    13021 cctaatcctt tgctgattgc gccgggaacc tgtgcatata tcagtgatgc aggactgact
    13081 gagtaaaagc cgtggatacg tgtaacatcc gaattatcaa gcgcaacgta ggtttttgtt
    13141 gtccctttct catgattttg tcgtgcatgg cgttgcagga attggttcag atcggcatcc
    13201 ccacaatcaa aattcattcg attgtgggtt ttccctatcg cggcctcatg ccagtctgta
    13261 aacatcattt cttcatgtcc ggcagggcga aagcagcggc aagaagcttt tcattcggcg
    13321 ctggcgggtt atctaaaatt tccatgatca tttgagtatc acgctccgtc agatataccc
    13381 gttcggcggc atcaacaatc ttctgtgcga caggtagtac gttactgacc acaaaatccg
    13441 tcaggttggt ttgctggatt gccgcagcgc ggactatcaa ctttttggca tccgtcgata
    13501 cacgtaacga caatctttcg ttagattcta tagctatctg aggcatggtt ttcatcctcc
    13561 tgtttatgaa caatatgtac aattataata catatctgta cgctttcaaa gcgtacatgt
    13621 gaggctgata tagtccaggc atggcaagaa ggtcgttcac tgtctttaaa cagggcatta
    13681 acttcggttt atcgcgattg cattatttta atctcactga ttacgtatca tcagggagtt
    13741 tgctaaatat attcatgatt ctcttttttg ccgtaactgc ttgattgatc ctacccgcgt
    13801 agtatggaca caaccctaag cggcggacat ctcctgctca cgttcagaag aagagagctg
    13861 agtttgctgt ttgcttcgcc agctgtagag ctgtgattta tacaggttaa gctcacgggc
    13921 ggcagcgggc accccaatgc gttccgccag tttcagggct tcctgacgaa attcaggcgt
    13981 gtgctgcttg cgtggctttt tggtggttga tgctggtttt gttatgtgag tcacctcttg
    14041 cttgagcgtt tactcactta gttgtgtgtc cactattgct gggtaagttc aaaagaacgt
    14101 tatccgcgaa aagtggatgg ggtatcgtaa gaatgccaac atgtggggca agagggggat
    14161 gtcagtttat cgcgatatac gagacgatag tttatcagta taagtttcgg ctattttccc
    14221 gagtttggga ggccgttctt tatcacaaat aaaaaaagca gcagcgaggt gctgctgtat
    14281 caaaaagcag attgataaat gcaacgtaag agacaaatgg ccaaccgtaa aagtgaccat
    14341 agctataata attatattga tattaagtgg caatgcaaag tatggtctta attatatcat
    14401 gatgagttca gtcagcggtg atatggcctt ataaggcttg cagtctttca tgggcagcaa
    14461 gtaacgtctg atatatgctt aaattcttac ttccgggttc aagtagaact tttttaaatt
    14521 cggtcatgag ttgctcttca tcttctttcg aacgcatgta ttgtggatgt tcctggaaga
    14581 aggtaagcgc ctgttctttg gtttgtttat atttttcgca aaaaatgctt gagctgattg
    14641 cgctattttt tgatgcggaa ttatcagcgt tctggtttga taatgattta ttcttcgcaa
    14701 ggtctgacgg cacatacgga agagactgac actcatcaat actatttgcg ttggccagtt
    14761 gctctttctg agcgccaggt tgctgtaccg gtttgctcac ggaggaaggg aggggcacct
    14821 gggcacagcc gatcagtaaa aagacaggaa gacagctata aaattttttc atattaactc
    14881 caactacaga agaatgaggc gccatgtttt tacacaaccg tcagaatgtt atctgacaat
    14941 agtgataagg ggcgaatgcg tttcaggaat gctagcaaaa aaaactcctg atataaataa
    15001 ttaattctcc atcccgatga caatatctga atttttgctg ctgtagaaca ataagccata
    15061 atttgtatac tatgagctga ttttctattt taaatcagca agcgctgtgc aagttggcta
    15121 atttaattag cgggtggcat cagtttcata atgattgcat caggattttg ccacccgctc
    15181 ctggtattgt ttacatatta aaatgatttt taactggtgc tgacaacaat gctaaatacg
    15241 caggaagtac ttaaagaagg agagaagcgg aaaatccgca gcccggaagc atggtttata
    15301 cagacgtgtt ccgcgcaaaa gctgcatatg tcattttctg aaagccgaca caatgaaaac
    15361 tgcctgattc aggaaggcgc gctgcttttt tgcgagcagg ccgttgtcgc accagtatca
    15421 ggagacctgg tttttcgatc gttaaaaatt gaagtactca gcaaattact ggcatttatc
    15481 gatggcgcag gattagtgga cacgacatat gctgaatccg ataaatgggt tttgctgagt
    15541 cctgagtttc gcgctatttg gcaagatcgt aaacgctgcg agtactggtt tttgcagcaa
    15601 attattacgc cttctccggc cttcaataag gtactggcgc tgttacgaaa aagcgagagt
    15661 tactggttgg ttggctattt actcgctcag tcaaccagcg gcaacacgat gagaatgctg
    15721 ggagaagact atggcgtttc ttatacccat tttcgtcgtt tgtgcagcag agcgttgggc
    15781 ggaaaagcga agagtgaatt acgaaactgg cgtatggcgc aatcgctgct gaatagtgta
    15841 gaaggccacg agaacatcac ccaattagcc gttaatcatg gttactcatc gccttcacat
    15901 ttttctagtg agatcaaaga gctgatcggc gtttcgccgc ggaaattatc aaatattatt
    15961 caattggcag acaaatgaag acacatattc ttttggccag agtgctggca tgtgccgcgc
    16021 ttgttctggt tgcacctggt tattctagtg aaaaaatacc tgtaacggga agtgggtttg
    16081 ttgcgaaaga cgatagcctg cggacatttt tcgatgccat ggcgctacag ctaaaggagc
    16141 ctgtcattgt tagcaaaatg gcggcacgaa aaaaaattac gggcaacttt gagtttcacg
    16201 atcctaacgc attactggag aagctttccc tacaactggg gctgatttgg tatttcgatg
    16261 ggcaggctat ctatatttat gacgccagtg aaatgcgcaa tgccgtggtt tctttacgca
    16321 acgtctcact caatgagttc aacaattttc taaaacgctc aggtttatat aacaaaaatt
    16381 acccgctacg tggcgataac cgtaaaggaa cattctatgt ttcagggcca cccgtctatg
    16441 ttgatatggt ggtcaacgcc gccaccatga tggacaagca aaacgatggt attgagctgg
    16501 gacgccagaa aataggggtg atgcgtctga acaatacctt cgtgggcgat cgtacctaca
    16561 atctgcgcga tcagaaaatg gttattcccg gtattgctac ggccattgaa aggttattgc
    16621 agggagaaga gcaaccctta ggtaatattg tcagtagcga acccccggcg atgccagcat
    16681 tttcagcgaa tggagaaaaa ggtaaagcag caaattatgc cggtggcatg agtctgcagg
    16741 aagctttaaa gcaaaatgcc gcggcgggca atattaaaat cgtggcctat ccggatacca
    16801 acagtttgtt agtaaaggga acggctgggc aggtgcattt tatcgaaatg ctggttaaag
    16861 cgctggatgt cgccaaacgt cacgtagaat tatccctgtg gattgtcgat cttaataaaa
    16921 gcgatctgga gcgtttgggc acttcatgga gcggcagcat aactattggg gacaaacttg
    16981 gcgtgtcatt aaaccagtct tcaataagta ccctcgatgg cagtcgattc atcgccgcgg
    17041 tcaatgcgtt agaagagaag aaacaggcga cggtggtttc gcgtccggta ttactgactc
    17101 aggaaaatgt tcccgctatt tttgataaca acagaacgtt ttacaccaag ctgattgggg
    17161 aacgtaatgt ggcgcttgag catgtaacat acggaacaat gatccgagtg ctgccccgtt
    17221 tttccgcaga tggtcagata gaaatgtcgc tggacattga agatggcaac gataagacgc
    17281 cgcaatccga tactaccacc tccgtagatg cgttacccga agtcgggcga acgttaatta
    17341 gcactattgc aagagttccg cacggaaaaa gtttgctggt cggtggttat acacgggatg
    17401 caaataccga tactgtccaa agtattccgg ttttaggcaa attaccgctt attggtagcc
    17461 tgttccgtta ttccagtaag aataaaagta atgttgttcg tgtgttcatg attgaaccaa
    17521 aagaaattgt cgacccgtta acgccggatg ccagcgaatc ggtaaacaat attctgaagc
    17581 aaagcggtgc ctggagtggg gacgataagt tacagaaatg ggttcgtgtt tatctggata
    17641 gaggtcagga ggtaattaaa tgattcctgg ctcaacctct ggtatttcat tttccagaat
    17701 attgtcccgg caggcatctc atcaggatgc gacccaacat actgatgcgc aacaggcgga
    17761 aatacaacag gccgcagagg attcgtctcc aggggcggaa gtacaaaaat ttgtccagtc
    17821 gacggacgaa atgtcagcgg cgctggcgca atttcgtaac cgtcgcgatt atgaaaaaaa
    17881 atccagtaat ttatctaaca gttttgaacg cgtgctggag gatgaggctt taccgaaggc
    17941 gaagcaaata ttaaagctaa ttagcgtaca tggcggcgcg ttagaagatt ttttacgtca
    18001 ggcgcgtagc ttatttcctg accccagtga tttagtcctt gtgttacgcg aattgcttcg
    18061 tcgtaaagac ctggaagaga tcgtgcggaa aaagctggag tcgttactta agcacgttga
    18121 agagcaaacc gatccgaaga ccctcaaggc agggattaat tgtgcgttga aggcccggct
    18181 ttttgggaaa acattatcgt taaaaccagg cttattgcgc gccagctatc ggcaatttat
    18241 ccagagtgaa tcacatgaag tggagattta ctctgactgg atagccagtt atggctatca
    18301 acgtcgactg gtggtactgg attttatcga gggttcgcta ttaaccgata ttgacgcgaa
    18361 tgacgccagc tgttcgcgcc tggagtttgg ccagctttta cgacgcctga cgcaacttaa
    18421 aatgttgcgc tccgctgacc tactgtttgt gagtacattg ttgtcgtatt cgtttaccaa
    18481 agcgtttaat gcggaggagt cgtcgtggct actactgatg ctttcgctat tgcaacagcc
    18541 acatgaagtg gattcgctgt tagccgatat tataggtttg aatgcgttat tgcttagtca
    18601 taaagaacat gcatcctttt tgcagatatt ttatcaagta tgtaaagcca taccctcttc
    18661 actcttttat gaagaatatt ggcaggaaga attgttaatg gcgttacgta gtatgaccga
    18721 tattgcctac aagcatgaaa tggcagaaca gcgtcgtact attgaaaagc tgtcttaatt
    18781 taatattaac aggataccta tagtgctgct ttctctactt aacagtgctc gtttacgacc
    18841 tgaattactg attctggtac taatggtgat gatcatttct atgttcgtca ttccattacc
    18901 tacctatctg gttgatttcc tgatcgcact gaatatcgta ctggcgatat tggtgtttat
    18961 ggggtcgttc tacattgaca gaatcctcag tttttcaacg tttcctgcgg tactgttaat
    19021 taccacgctc tttcgtctgg cattatcgat cagtaccagc cgtcttatct tgattgaagc
    19081 cgatgccggt gaaattatcg ccacgttcgg gcaattcgtt attggcgata gcctggcggt
    19141 gggttttgtt gtcttctcta ttgtcaccgt ggtccagttt atcgttatta ccaaaggttc
    19201 agaacgcgtc gcggaagtcg cggcccgatt ttctctggat ggtatgcccg gtaaacagat
    19261 gagtattgat gccgatttga aggccggtat tattgatgcg gatgctgcgc gcgaacggcg
    19321 aagcgtactg gaaagggaaa gccagcttta cggttccttt gacggtgcga tgaagtttat
    19381 caaaggtgac gctattgccg gcatcattat catctttgtg aactttattg gcggtatttc
    19441 ggtggggatg acccgccatg gtatggattt gtcctccgct ctgtctactt ataccatgct
    19501 gaccattggt gatggtcttg tcgcccagat ccccgcattg ttgattgcga ttagtgccgg
    19561 ttttatcgtg actcgcgtaa atggcgatag cgataatatg gggcggaata tcatgacgca
    19621 gctgttgaac aacccatttg tattggttgt tacggctatt ttgaccattt caatgggaac
    19681 tctgccggga ttcccgctgc cggtatttgt tattttatcg gtggttttaa gcgtactctt
    19741 ctattttaaa ttccgtgaag caaaacgtag cgccgccaaa cctaaaacca gcaaaggcga
    19801 gcagccgctc agtattgagg aaaaagaagg gtcgtcgtta ggactgattg gcgatctcga
    19861 taaagtctct acagagactg taccgttgat attacttgtg ccgaagagcc ggcgtgaaga
    19921 tctggaaaaa gctcaacttg cggagcgcct acgtagtcag ttctttattg attatggcgt
    19981 gcgcctgccg gaagtattgt tacgcgatgg cgagggcctg gacgataaca gcatcgtatt
    20041 gttgattaat gagatccgtg ttgaacaatt tacggtctat tttgatttga tgcgagtggt
    20101 aaattattcc gatgaagttg tttcctttgg cattaatcca acaatccatc agcaaggtag
    20161 cagtcagtat ttctgggtaa cgcatgaaga gggggagaaa ctccgggagc ttggctatgt
    20221 gttgcggaac gcgcttgatg agctttacca ctgtctggcg gtgacgctgg cgcgcaacgt
    20281 caatgaatat ttcggtattc aggaaacaaa acatatgctg gaccaactgg aagcgaaatt
    20341 tcctgattta cttaaagaag tgctcagaca tgccacggta caacgtatat ctgaagtttt
    20401 gcagcgtttg ttaagcgaac gtgtttccgt gcgtaatatg aaattaatta tggaagcgct
    20461 cgcattgtgg gcgccaagag aaaaagatgt cattaacctt gtggagcata ttcgtggagc
    20521 aatggcgcgt tatatttgtc ataaattcgc caatggcggc gaattacgag cagtaatggt
    20581 atctgctgaa gttgaggatg ttattcgcaa agggatccgt cagacctctg gcagtacctt
    20641 cctcagcctt gacccggaag cctccgctaa tttgatggat ctcattacac ttaagttgga
    20701 tgatttattg attgcacata aagatcttgt cctccttacg tctgtcgatg tccgtcgatt
    20761 tattaagaaa atgattgaag gtcgttttcc ggatctggag gttttatctt tcggtgagat
    20821 agcagatagc aagtcagtga atgttataaa aacaatataa gggcttaatt aaggaaaaga
    20881 tctatgcaac atttggatat cgctgaatta gttcgttccg cactggaagt aagtggttgc
    20941 gatccttcat taattggagg aatagatagc cattcaacaa ttgttctgga tttatttgca
    21001 ttgccaagta tctgtatcag cgtcaaggac gatgatgtat ggatctgggc gcaattgggt
    21061 gctgacagca tggtggtatt acaacagcgg gcttatgaaa tcttaatgac cataatggaa
    21121 ggatgccatt ttgcccgcgg cgggcaatta ctactggggg agcagaatgg ggagctaacg
    21181 cttaaagcct tagtgcatcc ggatttttta tctgacggtg aaaagttctc tactgccttg
    21241 aatgggtttt acaactatct ggaagttttt agtcggtcgc taatgagatg aaaacacctc
    21301 gtttactgca atatctggcc tacccacaaa aaataaccgg cccaattatt gaggcggaat
    21361 tgcgcgatgt ggccattggc gaactgtgtg aaatacgccg tggctggcac caaaaacagg
    21421 ttgttgcacg tgcgcaggtg gttggcttac agcgggaacg caccgtgctg agccttatcg
    21481 gcaatgccca ggggctgagc cgcgatgtcg tgctttatcc cactggacgt gcgttatcgg
    21541 cgtgggtggg atactcagta ttaggcgcgg tgttggatcc gacagggaaa atcgttgagc
    21601 gttttacccc tgaagtggcg ccgattagcg aagaacgcgt tattgatgtc gcaccgccgt
    21661 cttacgcttc gcgcgttggc gtccgtgaac cgctgattac cggtgtgcgc gcgattgacg
    21721 ggttattgac ctgtggcgta ggccagcgaa tgggcatttt tgcctccgca ggatgcggta
    21781 agaccatgct gatgcatatg ctgatcgagc aaacggaggc ggatgtcttt gttatcggtc
    21841 ttatcggtga acgaggccgt gaggtcactg aattcgtgga tatgttgcgc gcttcgcata
    21901 agaaagaaaa atgcgtgctg gtttttgcca cttccgattt cccctcggtc gatcgctgca
    21961 atgcggcgca actggcgaca accgtagcgg aatattttcg cgaccaggga aaacgggtcg
    22021 tgctttttat cgattccatg acccgttatg cgcgtgcttt gcgagatgtg gcactggcgt
    22081 cgggagagcg tccggcccgt cgaggttatc ccgcctccgt attcgataat ttgccccgct
    22141 tgctggaacg ccccggggcg accagcgagg gaagcattac tgccttttat acggtactgc
    22201 tggaaagcga ggaagaggcg gacccgatgg cggatgaaat tcgctctatc cttgacggtc
    22261 acctgtatct gagcagaaag ctggccgggc agggacatta cccggcaatc gatgtactga
    22321 aaagcgtaag ccgcgttttt ggacaagtca cgacgccgac acatgctgaa caggcatctg
    22381 ccgtgcgtaa attaatgacg cgtctggaag agctccagct tttcattgac ttgggagaat
    22441 atcgtcctgg cgaaaatatc gataacgatc gggcgatgca gatgcgggat agcctgaaag
    22501 cctggttatg ccagccggta gcgcaatatt catcctttga tgacacgttg agcggtatga
    22561 atgcattcgc tgaccagaat taaagtttta cagcggcgct gtacggtatt tcattcacag
    22621 tgtgagtcaa tattacttcg ctatcaggat gaggaccgcg ggctgcaggc cgaggaggag
    22681 gcgatccttg aacaaatagc gggtctgaaa ttgttattag atacgctgcg tgcagaaaac
    22741 agacagctca gtcgtgagga aatttatacg ttattacgta agcagtctat tgttcgccgg
    22801 cagataaaag atttagaact ccagattata caaattcagg aaaaacggag cgagctggaa
    22861 aagaaaaggg aagagtttca gaaaaaaagt aaatattggt tgcgcaaaga agggaactat
    22921 caacgctgga taattcgtca gaaaagacac tatatccagc gagagataca gcaggaagag
    22981 gccgagtcag aggagataat ttaatgggcg atgtgtcagc tgtcagttca tccgggaaca
    23041 ttttactgcc gcagcaggat gaggttggcg gtttatcaga agcattaaaa aaaacggtgg
    23101 aaaaacataa gacagaatat tccggtgata aaaaagatcg cgactatggc gatgctttcg
    23161 taatgcataa agaaacggct ttaccggtat tactggcggc atggcgacat tgcgcgccag
    23221 cgaaatcaga acatcacaat ggcaacgttt ctggtctgca tcataacgga aaaggcgaac
    23281 tcaggattgc tgaaaaactg ttgaaagtca ctgctgaaaa atctgtcggt ttgatttctg
    23341 cggaggccaa agtagataaa tccgcagcgt tgctatcgcc taaaaatagg ccgttagaaa
    23401 gcgtaagcgg taaaaaatta tctgctgatt taaaagccgt ggaatccgtt agtgaagtaa
    23461 ccgataatgc cacgggaatc tctgacgata atatcaaggc attgcctggg gataataaag
    23521 ccatcgcggg cgaaggcgtt cgtaaagagg gcgcgccgct ggcgcgggat gtcgcacctg
    23581 cccgaatggc cgcagccaat accggtaagc ctgacgataa agatcataaa aaggttaaag
    23641 atgtttctca gcttccgctg caaccaacca ctatcgccga tcttagccaa ttaaccggcg
    23701 gcgatgaaaa aatgccttta gcggcgcaat caaagccgat gatgactatt tttcccactg
    23761 ccgatggcgt gaaaggagag gatagctcgc tgacttaccg ttttcagcgc tggggaaatg
    23821 actattccgt caatattcag gcgcggcaag caggggagtt ttcgttaata ccgtcaaata
    23881 cgcaggttga acatcgtttg catgatcaat ggcaaaacgg taatccccag cgctggcacc
    23941 tgacgcgaga cgatcaacaa aatccgcagc agcaacagca cagacagcaa tctggcgagg
    24001 aggatgacgc ctgatgtcat tgcgtgtgag acagattgat cgtcgcgaat ggctattggc
    24061 gcaaaccgcg acagaatgcc agcgccatgg ccgggaagcg acgctggaat atccgacgcg
    24121 acagggaatg tgggttcggt tgagcgatgc agaaaaacgg tggtcggcct ggattaaacc
    24181 tgggggctgg cttgagcatg tctctcccgc tctggcgggg gcggcggttt ctgccggtgc
    24241 tgagcacctg gtcgttccct ggcttgctgc aacagagcga ccgtttgagt tgcccgtgcc
    24301 gcatttgtcc tgtcggcgtt tatgcgtaga gaaccccgta ccgggaagcg cgctgccgga
    24361 agggaaattg ttgcacatta tgagcgatcg gggcggcctg tggtttgagc atcttcctga
    24421 actgcctgca gtcgggggcg gcaggccgaa aatgctgcgt tggccgttgc gctttgtaat
    24481 cggtagcagt gatacgcagc gttctttgct gggccgaatc gggatcggag atgtactcct
    24541 gattcgtact tcccgtgcgg aagtttattg ctacgcgaaa aagttaggtc atttcaaccg
    24601 tgttgaaggg ggaattattg tggaaacgtt agatattcaa catatcgaag aagaaaataa
    24661 tacaactgaa actgcagaaa ctctgcctgg cttgaatcaa ttgcccgtca aactggaatt
    24721 tgttttgtat cgtaagaacg ttaccctcgc cgaactcgaa gccatggggc agcaacagct
    24781 attatcactg ccgaccaatg ttgaacttaa cgttgaaatt atggcgaatg gtgttttgct
    24841 tggtaatggc gaactggtac agatgaatga caccttaggc gttgagatcc atgaatggct
    24901 gagcgagtct ggtaatgggg aatgatatct cattaattgc cttactggca ttttccaccc
    24961 tgttgccatt tattattgcg tcaggaacct gtttcgttaa attttctatt gtatttgtca
    25021 tggtgcgtaa cgccctggga ttgcagcaga taccttcaaa tatgacgctt aacagcgtcg
    25081 cattgctgct ttctatgttt gttatgtggc caataatgca tgatgcctac gtctattttg
    25141 aggacgaaga tgtcaccttt aatgatattt cgtcattaag taaacacgtt gatgaaggtc
    25201 tggatggtta tcgcgattat ctgatcaaat attcagatcg cgagttagtt cagttttttg
    25261 aaaacgcgca actgaagcgt cagtatggag aagagaccga gacggtaaag cgtgacaaag
    25321 atgaaattga aaaaccatca atatttgcgt tattacctgc ttatgcgctg agcgaaataa
    25381 aaagcgcgtt taaaattggt ttttatctct atttgccctt tgttgtcgtc gacctggtgg
    25441 tatccagcgt gctactggcg ctggggatga tgatgatgag tccggtgacg atatctacac
    25501 ctattaagct ggtgcttttt gtcgcgcttg atggctggac cttactgtct aagggattga
    25561 tattacagta tatggacatt gcaacatgac atcattacga gacgggatag ttaaatggat
    25621 gatttagtgt ttgcaggtaa taaggcgctc tatcttgttt tgatcctgtc agggtggccg
    25681 acgattgtcg caacgattat cggcctcctg gtagggttat tccagacggt aacgcaatta
    25741 caggaacaga cgctgccttt tggcattaaa ttacttggcg tgtgtttatg cttgttttta
    25801 ctgtctggct ggtatggcga agttttactc tcttacgggc gtcaggtgat attcctggcg
    25861 ttggctaagg ggtaaaaaat gctttacgcg ttgtactttg aaattcatca cctggttgcg
    25921 tctgcggcac tagggtttgc tcgcgtagcg ccgatttttt tcttcctgcc gtttttgaat
    25981 agcggggtat taagcggcgc gccgagaaac gccattatca tcctggtggc attgggagta
    26041 tggccgcatg cattgaacga ggcgccgccg tttttatcgg tggcgatgat cccgttagtt
    26101 ctgcaagaag cggcggtagg cgtcatgctg ggctgtctgc tgtcatggcc tttttgggtt
    26161 atgcatgcgc tgggttgtat tatcgataac cagcgagggg caacgctaag tagcagtatc
    26221 gatccggcaa acggtattga tacctcggaa atggctaatt tcctgaatat gtttgccgct
    26281 gtcgtttatt tacaaaacgg cggtctggtc acgatggttg acgtgttaaa taaaagctat
    26341 cagctatgcg atccgatgaa cgagtgcacg ccttcattac cgccgctatt aacgtttatt
    26401 aatcaggtgg ctcaaaacgc cttggttctg gccagtccgg tggtattagt gctgttgctg
    26461 tcagaagtat tcctgggttt attgtcgcgc tttgctccgc aaatgaacgc ttttgcgatt
    26521 tcactgacgg taaaaagcgg cattgccgtt ttaattatgc tgctttattt ctctccggta
    26581 ctaccggaca atgtaccgcg actctctttc caggccacag ggttaagcag ttggttttac
    26641 gagcgagggg cgacgcatgt cctcgaataa aacagaaaaa ccgactaaaa aacggctgga
    26701 agactccgct aaaaaaggcc agtcatttaa aagtaaagat ctcattatcg cctgtctgac
    26761 gctgggagga attgcctatc tggtgtcgta tggctcattt aatgagttta tggggataat
    26821 taagatcatt attgcggata attttgatca gagcatggct gattacagtt tggccgtttt
    26881 tgggatagga ttaaaatatc tgattccatt tatgctgctc tgtttagtgt gttccgcatt
    26941 accggcgtta ttacaggccg gtttcgtgct ggcgacagaa gcattaaaac ctaatttatc
    27001 ggcgttaaac ccggtagaag gggcgaaaaa actttttagt atgcgcacgg ttaaagatac
    27061 ggtcaaaacc ctactgtatc tctcatcctt tgtggtggcc gccatcattt gctggaagaa
    27121 atataaggtt gaaatctttt ctcagttaaa tggcaatgtt gtggatattg ccgtcatttg
    27181 gcgtgaactt ctcctcgcat tggtattaac ttgccttgct tgcgcattga ttgtcttatt
    27241 attggatgct attgcggaat atttcctgac catgaaagat atgaaaatgg ataaggaaga
    27301 agtgaagcgt gaaatgaagg agcaggaagg gaacccagag gttaaatcta aaagacgtga
    27361 agttcatatg gaaattctgt ctgaacaggt gaaatccgat attgaaaact cacgcctgat
    27421 tgttgccaac cccacgcata ttacgatcgg gatttatttt aaacccgaat tgatgccgat
    27481 tccgatgatc tcggtgtatg aaacgaatca gcgcgcactg gccgtccgcg cctatgcgga
    27541 gaaggttggc gtacctgtga tcgtcgatat caaactggcg cgcagtcttt tcaaaaccca
    27601 tcgccgttat gatctggtga gtctggaaga aattgatgaa gttttacgtc ttctggtttg
    27661 gctggaagag gtagaaaacg cgggcaaaga cgttattcag ccacaagaaa acgaggtacg
    27721 gcattgagcc gcgtaaagca gtagcgatgt attcattggg agttttttga atgttcacta
    27781 accaccgtcg gggtttaata actgcatcag ataaacgcag tcgttaagtt ctacaaagtc
    27841 ggtgacagat aacaggagta agtaatggat tatcaaaata atgtcagcga agaacgtgtt
    27901 gcggaaatga tttgggatgc cgttagtgaa ggcgccacgc taaaagacgt tcacgggatc
    27961 cctcaagata tgatggacgg tttatatgct catgcttatg agttttataa ccagggacga
    28021 ctggatgaag ctgagacatt ctttcgtttc ttatgcattt atgattttta caatcccgat
    28081 tacaccatgg gactggcggc ggtatgccaa ctgaaaaaac aatttcagaa agcatgtgac
    28141 ctttatgcag tagcgtttac gttacttaaa aatgattatc gccccgtttt ttttaccggg
    28201 cagtgtcaat tattaatgcg taaggcggca aaagccagac agtgttttga acttgtcaat
    28261 gaacgtactg aagatgagtc tctgcgggca aaagcgttgg tctatctgga ggcgctaaaa
    28321 acggcggaga cagagcagca cagtgaacaa gaaaaggaat aattatggta aatgacgcaa
    28381 gtagcattag ccgtagcgga tatacccaaa atccgcgcct cgctgaggcg gcttttgaag
    28441 gcgttcgtaa gaacacggac tttttaaaag cggcggataa agcttttaaa gatgtggtgg
    28501 caacgaaagc gggcgacctt aaagccggaa caaagtccgg cgagagcgct attaatacgg
    28561 tgggtctaaa gccgcctacg gacgccgccc gggaaaaact ctccagcgaa gggcaattga
    28621 cattactgct tggcaagtta atgacactac tgggcgatgt ttcgctgtct caactggagt
    28681 ctcgtctggc ggtatggcag gcgatgattg agtcacaaaa agagatgggg attcaggtat
    28741 cgaaagaatt ccagacggct ctgggagagg ctcaggaggc gacggatctc tatgaagcca
    28801 gcatcaaaaa gacggatacc gccaagagtg tttatgacgc tgcggccaaa aaactgacgc
    28861 aggcgcaaaa taaattgcaa tcgctggacc cagctgaccc cggctatgca caagctgaag
    28921 ccgcggtaga acaggccgga aaagaagcga cagaggcgaa agaggcctta gataaggcca
    28981 cggatgcgac ggttaaagca ggcacagacg ccaaagcgaa agccgagaaa gcggataaca
    29041 ttctgaccaa attccaggga acggctaatg ccgcctctca gaatcaggtt tcccagggtg
    29101 agcaggataa tctgtcaaat gtcgcccgcc tcactatgct catggccatg tttattgaga
    29161 ttgtgggcaa aaatacggaa gaaagcctgc aaaacgatct tgcgcttttc aacgccttgc
    29221 aggaagggcg tcaggcggag atggaaaaga aatcggctga attccaggaa gagacgcgca
    29281 aagccgagga aacgaaccgc attatgggat gtatcgggaa agtcctcggc gcgctgctaa
    29341 ccattgtcag cgttgtggcc gctgttttta ccggtggggc gagtctggcg ctggctgcgg
    29401 tgggacttgc ggtaatggtg gccgatgaaa ttgtgaaggc ggcgacgggg gtgtcgttta
    29461 ttcagcaggc gctaaacccg attatggagc atgtgctgaa gccgttaatg gagctgattg
    29521 gcaaggcgat taccaaagcg ctggaaggat taggcgtcga taagaaaacg gcagagatgg
    29581 caggcagcat tgttggtgcg attgtcgccg ctattgccat ggtagcggtc attgtggtgg
    29641 tcgcagttgt cgggaaaggc gcggcggcga aactgggtaa cgcgctgagc aaaatgatgg
    29701 gcgaaacgat taagaagttg gtgcctaacg tgctgaaaca gttggcacaa aacggcagca
    29761 aactctttac ccaggggatg caacgtatta ctagcggcct gggtaatgtg ggtagcaaga
    29821 tgggcctgca aacgaatgcc ttaagtaaag agctggtagg taatacccta aataaagtgg
    29881 cgttgggcat ggaagtcacg aataccgcag cccagtcagc cggtggggtt gccgaggggg
    29941 tatttattaa aaatgccagc gaggcgcttg ctgattttat gctcgcccgt tttgccatgg
    30001 atcagattca gcagtggctt aaacaatccg tagaaatatt tggtgaaaac cagaaggtaa
    30061 cggcggaact gcaaaaagcc atgtcttctg cggtacagca aaatgcggat gcttcgcgtt
    30121 ttattctgcg ccagagtcgc gcataaaaac tgccaaaata aagggagaaa aatatgttaa
    30181 ttagtaatgt gggaataaat cccgccgctt atttaaataa tcattctgtt gagaatagtt
    30241 cacagacagc ttcgcaatcc gttagcgcta aagatattct gaatagtatt ggtattagca
    30301 gcagtaaagt cagtgacctg gggttgagtc ctacactgag cgcgcctgcg ccaggggtat
    30361 taacgcaaac ccccggaacg atcacgtcct ttttaaaagc cagtattcaa aataccgaca
    30421 tgaatcagga tttgaatgcc ctggcaaata atgtcacgac taaagcgaat gaggttgtgc
    30481 aaacccagtt acgcgagcag caggcagaag tcggaaagtt ttttgatatt agcggaatgt
    30541 cttccagtgc cgttgcgctg ttggctgccg cgaatacgtt aatgctgacg ttgaaccagg
    30601 ctgatagcaa actgtctggt aagttgtcat tagtcagttt tgatgcagct aaaacgacgg
    30661 caagctccat gatgcgcgaa gggatgaatg cgttgtccgg tagtatttcc cagagcgcgc
    30721 ttcagttggg gatcactggc gtgggcgcca aactggaata taaggggctg cagaatgaaa
    30781 gaggcgcgct taaacataat gccgcgaaga tcgataaact gaccactgaa agccacagta
    30841 ttaaaaacgt gctgaacggg cagaatagcg tcaaacttgg tgctgaaggc gtcgattctc
    30901 tgaaatcgtt aaatatgaag aaaaccggta ccgatgcgac gaaaaatctt aatgatgcga
    30961 cgcttaaatc taatgccgga accagcgcca cggaaagtct gggtattaaa aacagtaata
    31021 aacaaatctc ccctgaacat caggctattc tgtcgaaacg tcttgagtct gtcgaatccg
    31081 atattcgtct tgagcagaat accatggata tgacccgaat cgatgcgcgc aagatgcaga
    31141 tgacgggcga tctgattatg aagaactcag tcacggtcgg tggtattgca ggggcgtcca
    31201 ggcagtacgc cgctactcag gaacgttccg agcagcaaat tagccaggtg aataaccggg
    31261 ttgccagcac cgcatcggac gaagcccgtg aaagttcacg taaatcgacc agcctgattc
    31321 aggaaatgct gaaaacaatg gagagcatta accagtcgaa agcatccgca ctcgctgcta
    31381 tcgcaggcaa tattcgcgct taatctgaca gatcaactat acgccatcag ggggggattt
    31441 aatcgccctc ctgatggcga actggggata ttatgcttaa tattcaaaat tattccgctt
    31501 ctcctcatcc ggggatcgtt gccgaacggc cgcagactcc ttcggcgagc gagcacgccg
    31561 agattgccgt ggtaccgtct accacagaac atcgcggcac agatatcatt tcattatcgc
    31621 aggcggctac taaaatccag caggcacagc agacgctgca gtcaacgcca ccgatttctg
    31681 aagagaataa tgacgagcgc acgctggcgc gccaacagtt gaccagcagc ctgaatgcgc
    31741 tggcgaagtc cggcgtgtca ttatccgcag aacaaaatga gaacctgcgg agcacgtttt
    31801 ctgcgccgac gtcggcctta tttagcgctt cgcctatggc gcagccgaga acaaccattt
    31861 ctgatgctga gatttgggat atggtttccc aaaatatatc ggcgataggt gacagctacc
    31921 tgggcgttta tgaaaacgtt gtcgcagtct ataccgattt ttatcaggcc ttcagtgata
    31981 ttctttccaa aatgggaggc tggttatcgc ctggtaagga tggaaatacc attaagctaa
    32041 atgttgactc acttaaaagt gaaataagta gtttaattaa taaatacact caaataaata
    32101 aaaatacgat tttatttccc tcgcaaactg gcagcggaat gacaacagca acgaaagcgg
    32161 aagctgagca gtggattaaa gaattgaatt taccggacag ctgtctaaag gcgtctggtt
    32221 ctggttatgt cgtactggtg gatacggggc cactgagcaa aatggttagc gatcttaatg
    32281 gaataggatc gggttcagcc cttgaactgg ataacgccaa atatcaagcc tggcagtcgg
    32341 gttttaaagc acaggaagaa aatctgaaaa ccacattaca gacgctgacg caaaaatata
    32401 gcaatgccaa ttcattgtac gacaacctgg taaaagtgct gagcagtacg ataagtagca
    32461 gcctggaaac cgccaaaagc ttcctgcaag gataacagaa gaggatatta ataatggtta
    32521 caagtgtaag aactcagccc cccgtcataa tgccaggtat gcagaccgag atcaaaacgc
    32581 aggccacgaa tcttgcggcg aatctttccg cggtcagaga aagtgccaca gcaacgctgt
    32641 caggggaaat taaaggccag caactggaag attttcccgc gctgatcaaa caggcgagtc
    32701 tggatgcgtt gtttaaatgc gggaaagacg ccgaggcgtt aaaagaagtt tttaccaatt
    32761 caaataatgt cgccggtaag aaagcgataa tggagtttgc cggcctcttt cgttcagcgc
    32821 tcaacgccac cagtgattct cctgaggcga agacgctact gatgaaggtg ggggcagagt
    32881 ataccgcgca aatcataaaa gatggcctga aagaaaagtc agcttttggg ccatggctgc
    32941 cagaaacaaa gaaagcggaa gcgaagctgg aaaacctgga aaagcagctg ttagatatca
    33001 tcaaaaataa cactggcggt gaattaagta aattatcgac gaatcttgtt atgcaggagg
    33061 tgatgcccta tattgccagc tgcattgaac ataactttgg ctgtacgtta gatccgttaa
    33121 cccgcagcag tcttacgcag cttgttgaca aagcggcggc gaaggcggtt gaggcgcttg
    33181 atatgtgcca ccaaaaatta acgcaagagc agggtaccag cgtaggacgg gaagcccggc
    33241 accttgaaat gcaaacgttg atacccctgc tgctacgtaa tgtttttgca caaattcctg
    33301 cagataaact gcctgaccct aaaattccgg aacctgcggc tggaccagta cctgatggtg
    33361 ggaaaaaagc agaacctacg ggtattaata tcaatattaa tattgatagc agtaaccata
    33421 gcgtggataa cagtaagcat attaacaata gccgaagcca tgtcgataat agccagcgcc
    33481 atatcgataa tagcaaccat gataatagcc ggaagacgat tgataatagc cgaacattta
    33541 ttgataacag ccaacgccat ggcgagtcac accattcgac taacagcagc aacgtaagtc
    33601 atagtcattc gcgtgtggat tcgactacgc atcaaacgga gaccgcacac agcgccagca
    33661 cagggacaat tgaccatggc atcgcgggta aaattgacgt cacggctcat gcgacggcag
    33721 aggctgtgac caactcttca tccgaaagta aagatggaaa ggtggtcacg tcagaaaagg
    33781 gcactacggg tgaaacaacc tcttttgatg aagtcgatgg cgtaaccagc aagagcatta
    33841 tcggcaagcc gttacaggcc acggtgcacg gcgttgatga taataaacag caaagccaga
    33901 cggcagagat tgtgaatgtg aagccgcttg ccagtcaact ggctggcgtc gagaatgtta
    33961 aaatcgatac cttacaatca gactcgacgg taattacagg taataaagcc ggtacgaccg
    34021 ataatgataa tagccagaca gataagactg gcccattttc tggtttgaag tttaagcaaa
    34081 atagtttcct ctcaacagta ccgagcgtta cgaatatgca ttcaatacat ttcaacgccc
    34141 gtgaggcgtt tttgggtgtg atacgtaaag ccctggagcc ggatgcctct acaccgtttc
    34201 ctgtacgcag agcgtttgac ggcttgcgtg gggaaatatt acccaatgac acgataaaga
    34261 gtgcagcgtt gaaagcgcaa tgtagcgata ttgacaagca cccagaattg aaagcgaaaa
    34321 tggagacgct caaagaggtc attactcatc atccacaaaa agaaaaactg gctgagattg
    34381 cattgcagtt tgccagagag gcggggttga ccaggcaaaa aggggaaact gactatgtgt
    34441 taagtaatgt gctggacggc cttatcggag acggtagctg gcgagctggc ccggcttacg
    34501 agtcatacct gaataaacct ggtgtggatc gggttattac taccgttgat ggcttgcaca
    34561 tgcagcgtta attaactggg aaagatgcga tgaatatgga tattgaagca agagtcaaaa
    34621 aagtgatcac ctcctgtatt gccgttgatg ttgatagtat caatggtcag acccatctgg
    34681 ttgaggatct ttacgctgac tcattggatt taattgatat tgtatttggt cttagtgagg
    34741 agtttgacat tagttgtaat gaaaacgatc ttcctgatat gacgaccttt gcggatatat
    34801 gccgtgttgt taaaaaaagt cttgagtcca gggtgtagta tttttctctc gctcgacaac
    34861 aattgaacaa gattaattgt tatgaaaatc atcacacatg tagtacccgg ttcaggcatg
    34921 gctgcaatat atgatgatat tgctgacagt tcgcgttttg ttattaaagg caagttacgt
    34981 catgttgaaa atgatccgaa ggaactgctg atttgtgttc cgatgcgtag tgaatggcta
    35041 ttctactgga ttaaaggaga gaaatattgc gctcggcgat gggcgcgaaa aaatatcaag
    35101 acattgtgta accagattaa atttgaagaa gcaatcttgt aaaagatata attaaagagg
    35161 aaagtaaatt gcaagcacac caggatatta tcgctaatat tggtgagaaa ttgggtttac
    35221 cgctcacttt tgatgacaac aatcagtgct tattactact cgatagcgat atttttacgt
    35281 ctattgaagc taaagatgat atctggttat tgaacggtat gattataccg ctatcgcctg
    35341 tttgtggcga ttctatctgg cggcagatta tggtgattaa tggtgaactg gctgcgaata
    35401 atgaaggtac gttagcgtat attgatgccg cagagacgtt gttgtttata catgcaatta
    35461 ccgatctgac aaatatttat catatcatat cgcagcttga gtcatttgtg aataagcagg
    35521 aagcgctcaa aaacatacta caggaatatg ctaaggtatg atgagaggaa gttgaataat
    35581 ttaacattgt cttcattttc aaaatctggc gtgtcgagtg atacccggct atatattgct
    35641 aaggaaaata ctgataaggc atatgttgcg cctgaaaaat tttcgtcaaa agtattaacc
    35701 tggcttggaa aaatgccctt atttaaaaac actgaagtgg tgcaaaaaca cacggaaaat
    35761 atcagagtac agaaccaaaa gattttacag acatttctcc aggcattaac ggaaaaatat
    35821 ggggaaaaag cggtcaataa tgctttgtac atgtccagta taaatatgaa caaacccctt
    35881 acccaacgtt tagtagtgca gatcacggag tgtgtaaaag gtgctgacgg agggtttata
    35941 aatcttatta agaacaagga taatgttggt gtcatgaatg ccgctttagt cataaaaggc
    36001 ggcgatacaa aagtgacaga acaaaataac gatgttggtg cagaaagtaa gcaaccttta
    36061 ctcgatatcg cgctaaaggg ac
//
LOCUS       DAJVSD010000014        35886 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.014, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000014 DAJVSD010000000
VERSION     DAJVSD010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 35886)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35886)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35886
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.014"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..260)
                     /locus_tag="OQP62_000560"
     CDS             complement(<1..260)
                     /locus_tag="OQP62_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="HCS1720194.1"
                     /translation="MKIKFLSLCILAGVLFANQVNASENNSKDDVKYAALTQKDFDAL
                     PVEKRASVLDELGFIHEYGLNVPMNREQALQYYKQACELGGN"
     gene            435..565
                     /locus_tag="OQP62_000561"
                     /pseudo
     CDS             435..565
                     /locus_tag="OQP62_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032491235.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            796..2160
                     /locus_tag="OQP62_000562"
     CDS             796..2160
                     /locus_tag="OQP62_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016507029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1720195.1"
                     /translation="MNDYKMTPGELRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQG
                     ASEALIGIAIGIYGLAQAIFQIPFGLLSDRIGRKPLIVGGLAVFVAGSVIAALSHSIW
                     GIILGRALQGSGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIVTH
                     SLGLNALFWMIAALATLGILLTIWVVPNSTNHVLNRESGMVKGSFSKVLAEPRLLKLN
                     FGIMCLHILLMSTFVALPGQLADAGFPAAEHWKVYLATMVIAFAAVVPFIIYAEVKRR
                     MKQVFLFCVGLIIVAEIVLWGAGQHFWELVIGVQLFFLAFNLMEALLPSLISKESPAG
                     YKGTAMGVYSTSQFLGVALGGSLGGWIDGTFDGQTVFLAGAVLAMVWLAVASTMKEPP
                     YVSSLRVEIPADIVADDRLKQRLLAMKGVSEALIVAEEHSAYVKIDSKVTNRFEVEQL
                     ISKG"
     gene            complement(2207..2698)
                     /locus_tag="OQP62_000563"
     CDS             complement(2207..2698)
                     /locus_tag="OQP62_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HCS1720196.1"
                     /translation="MPSFDIVSEVDLQEARNGVDNAVREVESRFDFRGVEATIELNDA
                     NKTIKVLSESDFQVNQLLDILRAKLLKRGIEGASLDVPDEFVHSGKTWYVEAKLKQGI
                     ESAVQKKIVKLIKDSKLKVQAQIQGEEIRVTGKSRDDLQSVMALVRGDDLGQPFQFKN
                     FRD"
     gene            2824..3735
                     /gene="panE"
                     /locus_tag="OQP62_000564"
     CDS             2824..3735
                     /gene="panE"
                     /locus_tag="OQP62_000564"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HCS1720197.1"
                     /translation="MKITVLGCGALGQLWLSALCKHGHDVQGWLRVPQPYCSVNLIDT
                     DGSFFNESLTANDPDFLAKSELLLVTLKAWQVSDAVRTLASTLPVTSPILLIHNGMGT
                     IEELQSIQQPMLMGTITHAARRDGNIIIHVANGTTHIGPAREQDGDYSYLAEILQGVL
                     PDVAWHNNIRAEMWRKLAVNCVINPLTALWNCPNGELRHHTDEINAICEEVAAVIERE
                     GYHTSADDLCYYVEQVIDSTAENISSMLQDVRAMRHTEIDYITGYLLKRARVHGLAVP
                     ENSRLFEMVKRKESEYERSGTGMPRPW"
     gene            3698..4288
                     /gene="yajL"
                     /locus_tag="OQP62_000565"
     CDS             3698..4288
                     /gene="yajL"
                     /locus_tag="OQP62_000565"
                     /EC_number="3.5.1.124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein deglycase YajL"
                     /protein_id="HCS1720198.1"
                     /translation="MSAQALVCLAPGSEETEAVTTIDLLVRGGIHVTTASVASDGNLT
                     IVCSRGVKLLADAPLVEVADGDYDIIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIV
                     AAICAAAATVLVPHDIFPIGNMTGFPALKDKIPAEQWQDKRVVWDARVKLLTSQGPGT
                     AIDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYYE"
     gene            complement(4385..5194)
                     /locus_tag="OQP62_000566"
     CDS             complement(4385..5194)
                     /locus_tag="OQP62_000566"
                     /EC_number="3.11.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonoacetaldehyde hydrolase"
                     /protein_id="HCS1720199.1"
                     /translation="MNRIHAVILDWAGTTVDFGSFAPTQIFVEAFRQAFDVEITLAEA
                     RVPMGLGKWQHIEALGKLPTVDARWQAKFGRAMSAADIDAIYAAFMPLQIAKVVDFSS
                     PIAGVIDTIATLRAEGIKIGSCSGYPRAVMERLVPAAAEHGYRPDHWVATDDLVAGGR
                     PGPWMALQNVIALGIDAVAHCVKVDDAAPGISEGLNAGMWTVGLAVSGNEFGATWDAY
                     QTMSKEDVAVRREHAASKLYAAGAHYVVDSLADLPEVIAHINARLAQGERP"
     gene            complement(5204..6307)
                     /gene="phnW"
                     /locus_tag="OQP62_000567"
     CDS             complement(5204..6307)
                     /gene="phnW"
                     /locus_tag="OQP62_000567"
                     /EC_number="2.6.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-aminoethylphosphonate--pyruvate transaminase"
                     /protein_id="HCS1720200.1"
                     /translation="MTSRNYLLLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIR
                     QQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGL
                     MGIAHHAYDCGEVARPNVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHR
                     YGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGR
                     SRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQ
                     RSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS
                     QSDCFRIGNIGEVYAADITALLTAIRTAMYWTK"
     gene            6447..7166
                     /gene="phnR"
                     /locus_tag="OQP62_000568"
     CDS             6447..7166
                     /gene="phnR"
                     /locus_tag="OQP62_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate utilization transcriptional
                     regulator PhnR"
                     /protein_id="HCS1720201.1"
                     /translation="MKSIPGDIPQYLLIKAQLQARIQSGALKSGDKLPSERELCAIFN
                     TTRITIRESLAQLESSGLIWRADRRGWFVTPERLWLDPTQNTNFHKLCREQGREPKTA
                     LLSGVLTTVPVEVMEPLQLQPFDQIYLLTRLRYADGRAVCYCENHCLPARVPELLQYD
                     LNGSLTEVYESHYNLVYTSMHLSFYPTAMPAQAAQALGVMEGRPALLLRRLNYDQHGR
                     VLDLDIEYWRHDSLRIEVDTH"
     gene            7364..8377
                     /gene="phnS"
                     /locus_tag="OQP62_000569"
     CDS             7364..8377
                     /gene="phnS"
                     /locus_tag="OQP62_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-aminoethylphosphonate ABC transporter
                     substrate-binding protein"
                     /protein_id="HCS1720202.1"
                     /translation="MKLSRLALLSVFALASAPSWAESVVTVYSIDGLHDGDNSWYQVQ
                     FDAFTKATGITIRYVEGGGGVVVERLAKERTNPQADVLVTAPPFIQRAAAEKLLANFN
                     TDAASAIPDANNLYSPLVKNYLSFIYNSKLLKTAPASWQDLLDGKFKNKLQYSTPGQA
                     ADGTAVMLQAFHSFGSKDASFAYLGKLQANNVGPSASTGKLTALVNKGEIYVANGDLQ
                     MNLAQMERNPNVKIFWPANDKGERSALAIPYVIGLVQGAPQSENGKKLINFLLSKEAQ
                     TRVSELSWGMPVRSDVTPSDEHYKAATAALEGVQSWQPNWDDVAVSLSADISRWHKVT
                     ESE"
     gene            8383..9492
                     /gene="phnT"
                     /locus_tag="OQP62_000570"
     CDS             8383..9492
                     /gene="phnT"
                     /locus_tag="OQP62_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-aminoethylphosphonate ABC transport system
                     ATP-binding subunit PhnT"
                     /protein_id="HCS1720203.1"
                     /translation="MLMKTTAVHAPASQGTSGIVLDSLRVAYHGNVVLKPLSLTIEPG
                     EVLALIGPSGSGKTTVLRAVAGFVQPAGGRILIGDTDVTHLPPYKRGLAMVVQNYALF
                     PHLKVEDNVAFGLRAQKQPKALINERVTQALKTVGMSDYATRYPHQLSGGQQQRVAIA
                     RAIAVRPRVLLLDEPLSALDAQIRHNMVEEIARLHRELPELTILYVTHDQTEALTLAD
                     KIGIMKDGSLIAHGETRALYHHPPNRFAAEFLGRANILSAIALGITEVPGLVDVSCGG
                     AVIRAFSQGSHHGYNKLLCIRPQHLSLTPRSAYSNRFNATLQSVHWQGDLTHLLCDVA
                     GETVRMVLTHVNPLPRVGDKLALWFEPDDAVLIEV"
     gene            9495..10364
                     /gene="phnU"
                     /locus_tag="OQP62_000571"
     CDS             9495..10364
                     /gene="phnU"
                     /locus_tag="OQP62_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000052714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-aminoethylphosphonate ABC transporter permease
                     subunit"
                     /protein_id="HCS1720204.1"
                     /translation="MSLILPLEKPALNLRPLLWLLLPLLALATLFFWPLSLIVEQALR
                     GANGEIGLETFRQVVDSKRFVGALLNTLQIAFFATAGCLLLGSVMSLILVFIPFPGSE
                     LIGRVVDTFIALPTFLITLAFTFIYGSAGLLNGALMSLFAFELPPVDFLYSMQGVILA
                     EITVFTPLVMRPLMAALRQIDKSQLEAASILGAHPLRVIGQVIFPAALPALMASGSLC
                     LLLTTNEFGIVLFIGAKGVNTLPMMVYSKAILESDYTVACMIALINIVLSLGLFSLYR
                     LAASRTGVRSQPC"
     gene            10358..11149
                     /gene="phnV"
                     /locus_tag="OQP62_000572"
     CDS             10358..11149
                     /gene="phnV"
                     /locus_tag="OQP62_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-aminoethylphosphonate ABC transport system,
                     membrane component PhnV"
                     /protein_id="HCS1720205.1"
                     /translation="MLIWSPKGRAAAGVVASVLFIVFFFLPLAVILMSSLSQRWNGIL
                     PSGFTLNHFVNALHGAAWDALLASLTIGFCASLFALLCGVWAALALRQYGVKTQKWLS
                     MVFYLPSAIPSVSVGLGILVAFSQGPLQMNGTLWIVLTAHFVLISAFTFSNVSTGLAR
                     ISADIENVASSLGASPWYRLRHVTLPLLMPWMVSELALSLSLSMGELGATVMIYPPGW
                     TTLPVAIFSLTDRGNIADGAALTIVLVAITLLLMMKLERIAKRLG"
     gene            complement(11199..12647)
                     /gene="thiI"
                     /locus_tag="OQP62_000573"
     CDS             complement(11199..12647)
                     /gene="thiI"
                     /locus_tag="OQP62_000573"
                     /EC_number="2.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014168857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HCS1720206.1"
                     /translation="MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVV
                     RHWDNIEVRAKDENQRLAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALAQYREQL
                     EGKTFCVRVKRRGKHEFSSIEVERYVGGGLNQHIESARVKLTNPDVTVHLEVEDDRLL
                     LIKGRYEGIGGFPIGTQEDVLSLISGGFDSSVSSYMLMRRGCRVHYCFFNLGGAAHEI
                     GVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKVDDGQMGVVLKRMMVRAASKVA
                     ERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTE
                     DFARTMPEYCGVISKSPTVKAIKAKIEAEEENFDFSILDKVVEEANNVDIREIAQQTQ
                     QEVVEVETVSGFGANDVILDIRSVDEQDDKPLKVEGVDVVSLPFYKLSTKFGDLDQSK
                     TWLLWCERGVMSRLQALYLREQGFANVKVYRP"
     gene            12857..13099
                     /gene="xseB"
                     /locus_tag="OQP62_000574"
     CDS             12857..13099
                     /gene="xseB"
                     /locus_tag="OQP62_000574"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HCS1720207.1"
                     /translation="MPKKNEAPASFETALSELEHIVTRLESGDLPLEDALNEFERGVQ
                     LARQGQAKLQQAEQRVQILLSDNEEASPEPFIADNE"
     gene            13100..13999
                     /gene="ispA"
                     /locus_tag="OQP62_000575"
     CDS             13100..13999
                     /gene="ispA"
                     /locus_tag="OQP62_000575"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl diphosphate synthase"
                     /protein_id="HCS1720208.1"
                     /translation="MDFTQQLQACVTQANQALSRFIAPLPFQNTPVVEAMQYGALLGG
                     KRLRPFLVYATGQMFGVSTATLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCH
                     IKFGEANAILAGDALQTLAFTIISDAPMPEVADRDRIAMIAELANASGIAGMCGGQAL
                     DLAAEGQRITLDALERIHRHKTGALIRAAVRLGALSAGDKGRNTLPILDRYAESIGLA
                     FQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARNKARDLIEDARQSLHQ
                     LAAQSLDTSALEALANYIIQRDK"
     gene            14023..15885
                     /gene="dxs"
                     /locus_tag="OQP62_000576"
     CDS             14023..15885
                     /gene="dxs"
                     /locus_tag="OQP62_000576"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HCS1720209.1"
                     /translation="MSFDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVS
                     RSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKG
                     GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKDRRTVCVIGDGAITAGMA
                     FEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLARLLSGKLYSSLREGGKKVFSG
                     VPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVMGLISTLKNMRDLKGPQ
                     FLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPGYSKIFGDWLCETAA
                     KDSKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPVVAIY
                     STFLQRAYDQVIHDVAIQKLPVMFAIDRAGIVGADGQTHQGAFDLSYLRCIPDMVIMT
                     PSDENECRQMLFTGYHYNDGPTAVRYPRGNAQGVALTPLEKLPIGKGLVKRHGEKLAI
                     LNFGTLMPEAAKVAEALNATLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAG
                     SGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWLA"
     gene            15942..16916
                     /locus_tag="OQP62_000577"
     CDS             15942..16916
                     /locus_tag="OQP62_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HCS1720210.1"
                     /translation="MQYNTLGNTDLRVSRLCLGCMTFGEPSRGNHAWTLPEESSRPII
                     KRALEGGINFFDTANSYSDGSSEEIVGRALRDFARRDEVVVATKVFHRVGDLPEGLSR
                     AQILRSIDDSLTRLGMEYVDILQIHRWDYTTPIEETLEALNDVVKAGKARYIGASSMH
                     ASQFAQALALQKQHGWAPFVTMQDHYNLIYREEEREMLPLCWQEGVAVIPWSPLARGR
                     LTRPWGETTARLASDDVGKNLYDESDKNDAQIAERLAGVSEALGATRAQVALAWLLSK
                     RGVAAPIIGASREEQLDELLNAVDLTLKPEQIAELETPYKQHPVVGFK"
     gene            complement(17020..17535)
                     /gene="pgpA"
                     /locus_tag="OQP62_000578"
     CDS             complement(17020..17535)
                     /gene="pgpA"
                     /locus_tag="OQP62_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HCS1720211.1"
                     /translation="MTILPRHKDVAKSRLNLRNPWHLLATGFGSGLSPVVPGTMGSLA
                     AIPFWYLMTFLPWQLYSLVVMFGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITL
                     MALPTTDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILY
                     FIGHHWPLGII"
     gene            complement(17513..18490)
                     /gene="thiL"
                     /locus_tag="OQP62_000579"
     CDS             complement(17513..18490)
                     /gene="thiL"
                     /locus_tag="OQP62_000579"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HCS1720212.1"
                     /translation="MACGEFSLIARYFDRVRSSRLDVETGIGDDCALLNIPEKQTLAI
                     STDTLVAGNHFLPDIDPADLAYKALAVNLSDLAAMGADPAWLTLALTLPEVDEPWLEA
                     FSDSLFALLNYYDMQLIGGDTTRGPLSMTLGIHGYIPAGRALKRSGAKPGDWIYVTGT
                     PGDSAAGLAVLQNRLQVSEETDAHYLIQRHLRPTPRILHGQALRDIASAAIDLSDGLI
                     SDLGHIVKASGCGARVDVDALPKSDAMMRHVDDGQELRWALSGGEDYELCFTVPELNR
                     GALDVAIGQLGVPFTCIGQMSADIEGLNFVRDGMPVTFDWKGYDHFATP"
     gene            complement(18569..18988)
                     /gene="nusB"
                     /locus_tag="OQP62_000580"
     CDS             complement(18569..18988)
                     /gene="nusB"
                     /locus_tag="OQP62_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HCS1720213.1"
                     /translation="MKPAARHRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD
                     VLYFRELLSGVATNSAYLDGLMKPYLSRLLEELGQVEKAVLRIALFELSKRSDVPYKV
                     AINEAIELAKTFGAEDSHKFVNGVLDKAAPVIRPNKK"
     gene            complement(19009..19479)
                     /gene="ribE"
                     /locus_tag="OQP62_000581"
     CDS             complement(19009..19479)
                     /gene="ribE"
                     /locus_tag="OQP62_000581"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HCS1720214.1"
                     /translation="MNIIKANVAAPDARVAITIARFNQFINDSLLDGAVDALTRIGQV
                     KDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLA
                     SVAQDSGVPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA"
     gene            complement(19568..20671)
                     /gene="ribD"
                     /locus_tag="OQP62_000582"
     CDS             complement(19568..20671)
                     /gene="ribD"
                     /locus_tag="OQP62_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HCS1720215.1"
                     /translation="MQDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHH
                     RAGEPHAEVHALRMAGAKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQD
                     PNPQVAGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGR
                     TAMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQAS
                     YPQENLRQPVRIVIDSQNRVTPAHRIVQQPGETWIARTQEDSHAWPDSVRTISVPAHN
                     GHLDLVVLMMQLGRQQINSIWVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLC
                     ELPGLEKLADAPQFTFSEIRHVGPDVCLHMVSA"
     gene            complement(20675..21124)
                     /gene="nrdR"
                     /locus_tag="OQP62_000583"
     CDS             complement(20675..21124)
                     /gene="nrdR"
                     /locus_tag="OQP62_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HCS1720216.1"
                     /translation="MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVA
                     ELVMPRVIKSNDVREPFNEDKLRSGMLRALEKRPVSADDVEMALNHIKSQLRATGERE
                     VPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKDFGEEIARLQD"
     gene            21276..21815
                     /locus_tag="OQP62_000584"
     CDS             21276..21815
                     /locus_tag="OQP62_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3251 domain-containing protein"
                     /protein_id="HCS1720217.1"
                     /translation="MTRRYLRILLVGSLLSLTACAPQSEVRQMHQSISTLNKEMTQLN
                     QETVKITQQNKLNADSTRGVYLLPGANTPARLESQIGTLRMTLLEITPVADGAHATLR
                     IQGKSRDPLPAFSATVEYGQIQGTTENYQEVNAQSLLVNAPASLLAPSDVNIPLPLKG
                     ITPAQLGFIRIHDIQPVNQ"
     gene            22115..22978
                     /locus_tag="OQP62_000585"
     CDS             22115..22978
                     /locus_tag="OQP62_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-specific channel-forming protein Tsx"
                     /protein_id="HCS1720218.1"
                     /translation="MKKTLLAVSAALALTSSFTANAAENDQPQYLSDWWHQSVNVVGS
                     YHTRFSPKLNNDVYLEYEAFAKKDWFDFYGYIDIPKTFDWGNGNDKGIWSDGSPLFME
                     IEPRFSIDKLTGADLSFGPFKEWYFANNYIYDMGDNKASRQSTWYMGLGTDIDTGLPM
                     GLSLNVYAKYQWQNYGASNENEWDGYRFKVKYFVPITDLWGGKLSYIGFTNFDWGSDL
                     GDDPNRTSNSIASSHILALNYDHWHYSVVARYFHNGGQWQNGAKLNWGDGDFSAKSTG
                     WGGYLVVGYNF"
     gene            complement(23061..23168)
                     /locus_tag="OQP62_000586"
     CDS             complement(23061..23168)
                     /locus_tag="OQP62_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000176312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin Ldr family
                     protein"
                     /protein_id="HCS1720219.1"
                     /translation="MTLTELSITIWHDLAAPTLVGIATGLFLGWWHRRK"
     gene            complement(23611..23958)
                     /locus_tag="OQP62_000587"
     CDS             complement(23611..23958)
                     /locus_tag="OQP62_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH nuclease family protein"
                     /protein_id="HCS1720220.1"
                     /translation="MAIIPKNYARLESGYREKALKLFPWVCGRCSREFVYSNLRELTV
                     HHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGSTVIAGEDAQKDVGEATYN
                     PFADLKAMMNKKK"
     gene            complement(24128..24820)
                     /locus_tag="OQP62_000588"
     CDS             complement(24128..24820)
                     /locus_tag="OQP62_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HCS1720221.1"
                     /translation="MTRRADRLFQIVQILRGRRLTTAALLAQRLAVSERTIYRDIRDL
                     SLSGVPVEGEAGSGYRLMAGFDLPPLMLTHRESEALMVAIRLLKTWGGDSLSRELESA
                     QEKVLAILPEESRRKAEQTRIYAPDLGTSPHSRSAFDLIHQAVSAQQVLALHYRDEAG
                     HLSSRDIQPLGLFFWGEHWLLVAWCERREDYRCFRLDRCLQITPLNRRFRETIDRSLR
                     DFLRKVEHEKMP"
     gene            complement(24846..25211)
                     /locus_tag="OQP62_000589"
     CDS             complement(24846..25211)
                     /locus_tag="OQP62_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HCS1720222.1"
                     /translation="MKNLINWFEIPVTDMARAIAFYEQVMQISLRRETMDGADLAVFP
                     YAEPGPGGALIKQDDVAPVAQGVVIYLHTADLLASIERVVLAGGKCVLEPMVPGDDIG
                     TIALFIDSEGNRIGLHQPA"
     gene            complement(25358..26329)
                     /gene="secF"
                     /locus_tag="OQP62_000590"
     CDS             complement(25358..26329)
                     /gene="secF"
                     /locus_tag="OQP62_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HCS1720223.1"
                     /translation="MAQEYTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVR
                     GFNWGLDFTGGTVIEITLEKPAEMDVMREALQKAGYEEPQLQNFGSSHDIMVRMPPTE
                     GETGGQVLGSKVVTIINEATNQNAAVKRIEFVGPSVGADLAQTGAMALLVALISILVY
                     VGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVS
                     DRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLVVILMLYLFGGPVLEGFSLT
                     MLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSILP"
     gene            complement(26340..28187)
                     /gene="secD"
                     /locus_tag="OQP62_000591"
     CDS             complement(26340..28187)
                     /gene="secD"
                     /locus_tag="OQP62_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HCS1720224.1"
                     /translation="MLNRYPLWKYIMLVVVIIVGLLYALPNLYGEDPAVQITGVRGVA
                     ASEQTLIQVQKTLQEEKIPAKSVALEEGAILARFDTTDTQLRAREALMSVLGDKYVVA
                     LNLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLRE
                     KGIPYTTVRKENNYGLSITFRDSKARDEAIAYLTPRHRDLVISSQSGNQLRAVMTDAR
                     LSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGAT
                     ATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQD
                     EYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEV
                     INIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNI
                     KQGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIA
                     GIVLTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVII
                     LYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI"
     gene            complement(28215..28547)
                     /gene="yajC"
                     /locus_tag="OQP62_000592"
     CDS             complement(28215..28547)
                     /gene="yajC"
                     /locus_tag="OQP62_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000007628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HCS1720225.1"
                     /translation="MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQK
                     RTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAEAGYIAIALNDTTEVVIKRDFVAAVL
                     PKGTMKAL"
     gene            complement(28570..29697)
                     /gene="tgt"
                     /locus_tag="OQP62_000593"
     CDS             complement(28570..29697)
                     /gene="tgt"
                     /locus_tag="OQP62_000593"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HCS1720226.1"
                     /translation="MKFELDTTDGRARRGRLVFDRGVVETPAFMPVGTYGTVKGMTPE
                     EVEATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIR
                     KITEQGVHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSME
                     MSLRWAKRSRDRFDSLGNKNALFGIIQGSVYEDLRDISVKGLVEIGFDGYAVGGLAVG
                     EPKADMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGH
                     LFVTDGVVKIRNAKHKSDISPLDAECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHN
                     LRYYQRLMAGLRKAIEEGKLESFVTEFYQRQGRPVPPLNVD"
     gene            complement(29894..30958)
                     /gene="queA"
                     /locus_tag="OQP62_000594"
     CDS             complement(29894..30958)
                     /gene="queA"
                     /locus_tag="OQP62_000594"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HCS1720227.1"
                     /translation="MRVTDFSFELPESLIAHYPQPERSRCRLLSLEGPTGALTHGTFT
                     DLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPK
                     PGTELLLGDDESIHATMTARHGALFEVEFNDPRPVLDILNAIGHMPLPPYIDRPDEDA
                     DRELYQTVYSEKPGAVAAPTAGLHFDEPLLAALREKGVEMAFVTLHVGAGTFQPVRVD
                     TIEDHIMHSEYAEVPQEVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKSDLIEPF
                     FGDTQIFIYPGYQYKVIDALITNFHLPESTLIMLVSAFAGYQHTMNAYKTAVEQKYRF
                     FSYGDAMFITCNPQAISERP"
     gene            31052..31633
                     /gene="acpH"
                     /locus_tag="OQP62_000595"
     CDS             31052..31633
                     /gene="acpH"
                     /locus_tag="OQP62_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP phosphodiesterase"
                     /protein_id="HCS1720228.1"
                     /translation="MNFLAHLHLAHLADSSLSGNLLADFVRGNPATHYPPDVVEGIYM
                     HRRIDVMTDNLPEVREAREWFRHETRRVAPITLDVMWDHFLSRHWTQISPDFPLQAFV
                     GYAHAQVATILPDSPPRFVNLNDYLWSEKWLERYRDMDFIQNVLNGMANRRPRLDALR
                     DSWYDLDAHYDALEERFWHFYPRMMAQAARKAL"
     gene            31843..32445
                     /locus_tag="OQP62_000596"
     CDS             31843..32445
                     /locus_tag="OQP62_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HCS1720229.1"
                     /translation="MVLVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPM
                     DFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAM
                     VADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA
                     LQFHEEHGDVCPAQWEKGKEGMNASPDGVAKYLAENISSL"
     gene            complement(32517..34334)
                     /gene="malZ"
                     /locus_tag="OQP62_000597"
     CDS             complement(32517..34334)
                     /gene="malZ"
                     /locus_tag="OQP62_000597"
                     /EC_number="3.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin glucosidase"
                     /protein_id="HCS1720230.1"
                     /translation="MLNAWHLPVAPFVKQHNDKLTITLWLSGENPPSRVTLRSEFDNE
                     EISLAMRKQRRQPQPGVTAWRATLNIALGQPRRRYSFKLLWHDRQRWFTPQGFSCFPP
                     ARLEQFAVDVPDSGPQWVADQIFYQIFPDRFARSATREADQDRVYYHHAAGQEIVLRD
                     WDDPLTPQAGGSTFYGGCLNGICEKLPYLKKLGVTALYLNPVFTAPSVHKYDTEDYRH
                     VDPQFGGDRALLRLRRETQAQGMRLVLDGVFNHSGDSHAWFDRHNRSTGGACHHPDSP
                     WRDWYSFSPQGVALDWLGYPSLPKLDYQSETLVDEIYRGEDSIVRHWLKAPWNMDGWR
                     LDVVHMLGEAGGARHNLQHVAGITRAAKEAQPEAYIVGEHFSDARQWLQADAEDAAMN
                     YRGFTFPLWGFLANTDIAYEPQHIDARTCIAWMDNYRAGLSHQQQLRMFNQLDSHDTA
                     RFKTLLGKDAARLPLAVVWLFTWPGVPCIYYGDEVGVDGANDPMCRKPFPWDERKQDG
                     NLLALYQRMAKLRQSSLALRRGGCQALYAEGDVVVFVRVYQQQRALVAINRGEACEVA
                     LEALPLLNVAGWQCKTGSGDIREGRLSLPAISATVWMNR"
     gene            complement(34496..35866)
                     /gene="proY"
                     /locus_tag="OQP62_000598"
     CDS             complement(34496..35866)
                     /gene="proY"
                     /locus_tag="OQP62_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline-specific permease ProY"
                     /protein_id="HCS1720231.1"
                     /translation="MESNNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSV
                     LLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIV
                     AIADVTAFGIYMGVWFPAVPHWIWVLSVVLIICAINLMSVKMFGELEFWFSFFKVATI
                     IIMIVAGIGIIVWGIGNGGQPTGIHNLWSNGGFFSNGWLGMIMSLQMVMFAYGGIEII
                     GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQH
                     MGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKVFAKTSRRGIPWVT
                     VLVMTIALLFAVYLNYIMPENVFLVIASLVTFATVWVWIMILLSQIAFRRRLPPEEVK
                     ALKFKVPGGVVTTIAGLIFLVFIIALIGYHPNTRISLYVGFAWIVLLLIGWIFKRRRD
                     RQLAQA"
BASE COUNT         8287 a        10091 c         9453 g         8055 t
ORIGIN      
        1 tagttaccgc caagctcaca ggcctgctta taatactgca acgcctgttc gcgattcatc
       61 ggtacattaa ggccgtattc atggataaac cccagttcat ccagaaccga agctcttttt
      121 tccacaggca aagcatcaaa atccttctgg gtaagcgcag cgtattttac atcatcttta
      181 ctgttgttct ctgatgcatt cacctggtta gcaaataaaa cacctgctaa aatacataat
      241 gataagaatt taattttcac aactaattca ctccttgaat aatataataa ataagactga
      301 tgactaacct tctgcctgat aaacgcgcgc catcacgcag aaagtttgct atcagtctcg
      361 gcgttgttga ataaatcaaa ttttcaggag atggacggtt ctgatcattg ccatcgtttc
      421 agaatcgggt ccctatggca aagcaaaagt ttaaagtcac ccactggcca gccacactca
      481 ggcagcgcgg ttcgctgaca gtctgacttg acgagcctgc tattgctata tgaagcaaca
      541 gcgtacacag cctgaaggcc gtggctaacc gctacactat actgagatgg ctcagatagc
      601 cactacagct caaggagatc ggaatatgaa tgagcacaag gctatgctga ctctcccgat
      661 cgcccctatc gtgttaacaa tttatctctt ttttagctca actgtttcaa aaacataata
      721 tttgctaatt aaccctctat ttacccggca cactccccgc actacactac tcccagcttt
      781 tatacagagg tggcaatgaa cgattataaa atgacgccag gggagctgcg cgccacatgg
      841 ggtttaggga ccgtcttttc gttgcgtatg ctgggcatgt ttatggttct accagtactg
      901 accacatacg gtatggcgct acagggcgcc agcgaagcat taatcggcat tgcgatcggt
      961 atttacgggc tggcgcaggc tatctttcaa attccctttg ggctgctgtc cgaccgcatt
     1021 ggccgtaaac cgctgattgt cggcggactg gcggtatttg tcgcgggtag cgtcattgcc
     1081 gcgctctccc actctatctg gggcattatt ctggggcgag cgctacaggg gtccggcgct
     1141 attgccgccg ccgtcatggc gctcctgtct gatctgaccc gagagcaaaa ccgcaccaaa
     1201 gcgatggcgt ttatcggcgt cagctttggt atcaccttcg cgattgcgat ggtattaggg
     1261 ccgattgtta cccatagtct gggattgaac gcgttgttct ggatgatcgc cgccctcgcc
     1321 accctgggca ttcttctgac gatctgggtg gttcccaaca gtaccaacca tgtgctgaat
     1381 cgcgaatccg ggatggtcaa aggcagcttc agtaaagtgc tggcggagcc gaggctgctc
     1441 aagctcaact tcggcatcat gtgtctgcat attttattga tgtccacctt tgtcgccctg
     1501 cccggccagc ttgccgatgc cggtttccct gccgccgaac actggaaggt gtatctggca
     1561 accatggtga tcgcctttgc cgccgtcgtg ccttttatca tctatgctga agtcaaacgg
     1621 cggatgaagc aggtattcct gttctgcgtg gggctcatta tcgtcgcaga aatcgtgttg
     1681 tggggagcgg gccagcattt ctgggagctg gtgattggcg tacaactctt tttcctcgcc
     1741 tttaatctga tggaggcgct gctgccttcg cttattagca aagagtcgcc cgcggggtat
     1801 aaaggaacgg cgatgggcgt ctattctacc agtcagtttc ttggcgtggc gcttggcggc
     1861 tcgctgggcg gctggataga cggcacgttt gatgggcaaa ccgttttcct tgccggggcc
     1921 gtactggcga tggtatggct ggcggtggca agtaccatga aagagccgcc ctatgtcagc
     1981 agcctgcgtg tggaaattcc agcggatatc gttgctgacg acaggctaaa acagcgactg
     2041 ttggcaatga aaggcgtaag cgaagcgctg atcgtggcgg aagagcattc cgcttacgtc
     2101 aaaatcgaca gcaaagtgac caatcgcttt gaagttgaac agcttatcag caaaggatga
     2161 atgcagcatt gccggatggc ggcgaggctc tatccggcat aacaacttaa tcgcggaagt
     2221 ttttgaactg gaacggctgg cctaaatcgt cgccgcgaac cagcgccatt accgattgca
     2281 gatcgtcacg tgatttgccc gtcacgcgaa tctcttcccc ctgaatttgc gcctgcacct
     2341 tcagtttgct gtctttaatc agcttgacga ttttcttctg cacggcgctt tcaatgccct
     2401 gcttcagctt cgcttccaca taccaggttt taccgctatg cacgaactcg tccggtacat
     2461 ccagcgaagc gccttcaata ccgcgtttaa gcagcttggc gcgcagaata tcgagcaact
     2521 gattgacctg gaaatcggac tcgctcagca ccttgatggt tttattggca tcgttcagtt
     2581 caatagtcgc ctctacgcca cgaaagtcaa aacgagactc aacctcgcga accgcgttat
     2641 ccacgccgtt acgcgcttcc tgcagatcaa cttcagaaac aatatcgaaa gatggcatct
     2701 tttcttctcc cttcattttc gttgcgttgc ataatacctg caacgaggct taacgagaag
     2761 cttagctgat gacgctataa ttagcgccat aacacctggc gctgttgcag gtgaggagga
     2821 acaatgaaaa ttactgtact gggatgcgga gccttaggac aactttggct ttcggcactg
     2881 tgcaaacatg gacatgacgt acagggctgg ctacgggtgc cacaacctta ttgcagcgta
     2941 aatctgatcg ataccgatgg ttcctttttc aacgaatcac tgacggcaaa cgatccggat
     3001 tttttggcga agagcgaact gttgttagtc acgctgaaag cgtggcaggt ttccgacgca
     3061 gtacgaaccc tggcgtcaac cctaccggtg acgtcgccta tcctgctcat tcataatgga
     3121 atgggaacca tagaagaact gcaaagtatc caacagccga tgttgatggg gactatcacc
     3181 catgctgcgc gccgcgacgg taatatcatt attcatgtcg ctaacggtac tacgcatatt
     3241 ggcccggcgc gcgagcaaga cggcgattac agttatctcg ccgagatcct gcaaggggta
     3301 ctgcccgatg tcgcctggca taacaatatc cgcgcagaga tgtggcgcaa actggccgtc
     3361 aactgtgtta tcaacccgct caccgcgctt tggaactgcc cgaacggcga gctgcgccat
     3421 catactgatg aaatcaacgc gatttgcgaa gaggtcgccg ccgtgattga acgtgagggc
     3481 taccacacat cggcagacga tttatgctat tatgttgagc aagtgattga cagtacggca
     3541 gaaaatatct catccatgtt gcaggacgtg cgcgccatgc gccataccga aattgactac
     3601 atcaccggtt atttactcaa gcgcgcccgc gtgcacggtc tcgccgttcc ggaaaatagc
     3661 cgcctgtttg aaatggtaaa gcgaaaggag agtgagtatg agcgctcagg cactggtatg
     3721 cctcgcccct ggtagtgaag agaccgaagc ggtcaccact atcgatctgc tggttcgcgg
     3781 cggaatccac gtcactaccg ccagcgtcgc cagcgatggc aacctgacga ttgtctgctc
     3841 gcgcggcgtg aagctgctgg cggatgcgcc gctggttgaa gttgccgacg gcgattatga
     3901 catcatcgtg ttgcccggcg gaattaaagg cgccgagtgc tttcgcgaca gcccgctgct
     3961 ggtcgaaacc gtaaaacagt ttcaccgctc cgggcgcatt gtcgcagcca tttgcgccgc
     4021 agccgctaca gtgctcgtgc cgcacgatat cttccctatc ggcaatatga ccggttttcc
     4081 ggcgctgaaa gataagatcc ccgccgaaca gtggcaggat aagcgtgtgg tgtgggatgc
     4141 gcgggtaaaa ttattaacca gccagggacc gggtaccgct atcgattttg gcttgaaaat
     4201 catcgacctg ttggttggtc gtgaaaaagc gcatgaagtg gcttcgcaac tggtgatggc
     4261 ggcggggatt tataactact acgaataaga atgattgccg gatggcggcg taaacacctt
     4321 atccggccta caaaacggta cagtctgtag gccggataag cggcagcgcc atccggcagt
     4381 tattttacgg gcgttcgccc tgcgccagac gcgcattaat atgcgcaatc acctcaggta
     4441 aatccgccag tgaatccacc acgtaatgcg ccccggcggc gtacagcttg ctggccgcgt
     4501 gctcgcggcg gaccgcaacg tcctctttcg acattgtctg ataggcgtcc catgttgcgc
     4561 cgaattcgtt acccgatacc gccagcccca ccgtccacat ccccgcgtta agcccctcgc
     4621 taatgcccgg cgcggcatca tctaccttca cgcagtgcgc gaccgcatca atgcccagcg
     4681 caatcacgtt ttgcagcgcc atccacggcc ccgggcgacc acccgcgacc aggtcgtccg
     4741 ttgccaccca atgatccgga cgataaccat gctcagcggc ggcgggaacc aggcgctcca
     4801 tcaccgctcg tgggtaaccg gagcaggagc ctatcttgat accctcggct cgtagcgtcg
     4861 cgatcgtgtc gataactccg gcaataggag aagaaaaatc gacaacttta gcaatctgta
     4921 acggcatgaa agcggcgtag atggcatcaa tatctgctgc gctcatggcg cggccaaact
     4981 ttgcctgcca gcgcgcgtca acagtaggta attttcccag cgcttcaatg tgttgccatt
     5041 tacccagccc cattggcacg cgtgcttcgg cgagggtgat ctccacatca aatgcctgac
     5101 ggaacgcctc gacgaaaatt tgcgtcggcg cgaaggagcc aaaatcgacg gtggtgcccg
     5161 cccagtcgag aataacagcg tgaatacggt tcatcatggt tccttatttc gtccagtaca
     5221 tggcggtacg aatggcggtc agcagggcag tgatatcggc ggcatatact tcgccaatgt
     5281 tgccgatgcg gaagcagtcg ctttgcgaca ccttgcctgg atagataaca aagccctgct
     5341 ctttgaggcg gcgataaaat tcgctaaagc gatactgcgg gtcttccggt gaataaaagg
     5401 cggtgataat gggcgaatga agctcgtcat ccagcagcgt gttaaagccc agcgcccgca
     5461 ttccggccac caggctgcgc tgattttgct gatagcgttg atgacgtgcc gccacgccac
     5521 cttctttcgc cagctctttc agcgcctgtg caaacgccag gacggtatgt gtgggcgaag
     5581 taaaacgcca tttgccgtgg ttatcctcca tgcagcgcca ctgggcgtag agatctaacg
     5641 acagcgagcg ggaacgccct ttgcacgcgg ccagtttttg ctcgcgggca atcacaaagg
     5701 caaaacccgg cacgccctgg atgcatttat tagcggagct gatcagatag tcgatgtgta
     5761 atgctgcaat atccatgggg atgccgccga agctgctcat ggcgtcaacg atgtaggttt
     5821 tgccatagcg atgcgccaga gcgccaacct catcaatggg gttgagcatc ccggtggtcg
     5881 tttcgctatg caccatggcg atatggctga tcgtcgggtc ggcgttgagg atcgcgtcga
     5941 tcgcctgcac gttcgggcgc gcaacttcgc cgcagtcgta agcgtgatgg gcgataccca
     6001 taaggccggc catctcgacc attcgtgcgc cgtatgcacc gttgctgacg atcagcacct
     6061 tatcctgcgg ccccaatgcg cttcccagta cggcttccac agcatagctg ccgctgcctt
     6121 gcagcagtac ggaggtgtag ccttcggagg ccgttgccag tgcggtcaac tgctggcgga
     6181 tctgttctac cacgccgata ttgtaatcat catcccaggt acagctatcg aacaacatcg
     6241 cttctttcac ggtgcgagag gtggtgagtg ggccaggggt cagcaacaga tagttacgcg
     6301 aagtcatatc atttaccttt ggtctatacc agattgcatt tatcatgacg atctttgccg
     6361 cgatgggtca aagagaaaat cgcgctgcaa caaaaaattc atctctgctt gtataatggc
     6421 ggcaggtaaa acggaagcga gtaagcatga aatctatccc gggcgatatc ccgcagtacc
     6481 tgttgatcaa ggcgcagctt caggcgcgta ttcagagcgg tgcgttgaaa agcggtgata
     6541 aactgccgtc tgaacgcgaa ctgtgcgcga tcttcaacac cacgcgcatt actattcgcg
     6601 aaagcctggc gcagctggag tccagtgggc ttatctggcg cgccgatcgt cgcggttggt
     6661 tcgttacgcc ggaacgcctg tggctggatc cgacccagaa caccaacttc cataagcttt
     6721 gccgcgagca ggggcgggag ccaaaaaccg cgctactgag cggcgtgtta accaccgtgc
     6781 ctgtcgaggt catggagccc ctccagctcc agccgtttga tcaaatctat ctgctgaccc
     6841 gtctgcgtta cgccgatggc cgcgccgtgt gctactgcga aaaccattgt ttgcccgccc
     6901 gcgtgcctga gctgctgcag tacgatctca acggcagcct gaccgaggta tacgagtcgc
     6961 actacaacct cgtctatacc agcatgcatc tgtcgttcta ccccaccgcc atgcctgcgc
     7021 aggccgcaca ggcgctggga gttatggaag gacgcccggc gctgttgctg cgccgtctga
     7081 actacgatca acacgggcga gtgctggatc tggatatcga atactggcgt cacgacagcc
     7141 tgcgcattga ggtagatacc cactagcggg tgcgccggat gttggctgcg ggccttatcc
     7201 ggcctgtcaa tcgtatcgtc tcacggctat cccgataagc gcagcatcat ccggcgtgga
     7261 ctgatttatt tctctttcat cgttttgtca tataagccgt ttagcgtaaa aagcaaacct
     7321 ggtataggcc agaaaatgca acgtacgcta tgaggctatt acgatgaaac tttcccgact
     7381 tgctctgctg tctgtcttcg ctctcgccag cgccccgtca tgggcggaat cagtggtcac
     7441 ggtgtactcc atcgacgggc tgcacgatgg cgataacagc tggtaccagg tgcagtttga
     7501 cgcgttcacc aaagcgaccg gcattaccat acgctatgtt gaaggcggtg gtggcgtggt
     7561 agtggaacgt ctggcaaaag agcgtacgaa tccacaggcc gacgtgctgg taaccgcgcc
     7621 gccattcatt cagcgcgccg ccgccgaaaa gctgctggcg aactttaaca ccgacgccgc
     7681 ctcggctatc cccgatgcca acaaccttta ttcgccgctg gtaaagaatt atctgagctt
     7741 tatctacaac agcaagctgc tgaaaactgc cccggcgagc tggcaggatc tgcttgacgg
     7801 taaattcaaa aataaactcc agtattccac gccaggtcag gccgctgacg gcacggcggt
     7861 aatgctgcag gctttccaca gcttcggcag taaagatgcc agttttgcgt atctcggcaa
     7921 gctgcaggcc aataacgtcg ggccatctgc ctctaccggc aagctaaccg cgctggttaa
     7981 taaaggtgaa atctacgtcg ctaacggcga cctgcaaatg aacctcgcgc agatggaacg
     8041 taacccgaac gtgaaaatct tctggccggc caacgacaaa ggcgagcgca gcgcgctggc
     8101 catcccttat gtcattggcc tggtccaggg ggcgccgcag agtgaaaatg gtaaaaagct
     8161 gattaacttc ctgctgagta aagaagcgca gactcgcgtc agcgaactct cctggggaat
     8221 gccggtacgc agcgacgtga cgccgagcga cgaacattac aaggccgcca ctgccgcgtt
     8281 agaaggcgtg cagagctggc agccaaattg ggatgacgta gccgtttcgc tgtcggcaga
     8341 tattagccgt tggcacaaag tgaccgaaag cgagtaagcc tgatgctgat gaaaacgact
     8401 gccgttcacg cccctgcatc gcaggggaca tcggggatag tcctcgactc gctgcgtgtt
     8461 gcgtatcacg gcaacgtggt gcttaaaccg ctctctttga cgattgaacc tggcgaagtg
     8521 ctggcgctga ttggcccatc aggatctgga aaaacgacgg tgctgcgtgc ggtggcgggc
     8581 tttgtgcagc ctgcaggcgg tcgtatcctg attggcgata cggacgtcac ccatctgcca
     8641 ccctataaac gcgggttggc gatggtggtg cagaactacg ccttgttccc gcatctgaaa
     8701 gtggaagaca acgtcgcttt tggtctgcgt gcgcagaagc agccaaaggc gctaattaat
     8761 gagcgtgtca cgcaggcgct gaagacagtt ggcatgagtg attacgccac ccgttatccg
     8821 catcaacttt ctggcggcca gcagcaacgc gtggccatcg cccgcgcgat tgccgtgcgc
     8881 ccgcgcgtgc tgttgctgga tgaaccactg tcagcgctgg acgcacagat tcgtcataat
     8941 atggtggaag aaatcgcccg tcttcaccgt gagctgccgg aactcactat tctctacgtc
     9001 acccacgatc aaacggaagc gctcaccctg gccgataaaa tcggcattat gaaggatggc
     9061 tcgctgattg ctcacggcga aacccgcgcg ttatatcacc atccgcccaa tcgttttgcc
     9121 gccgaattct taggtcgcgc caatattctc tccgccatcg cgctggggat aacggaggtt
     9181 ccggggctgg tggacgtcag ctgcggcggt gcggtgattc gcgcgttcag ccagggcagc
     9241 caccacggtt acaacaaact gctgtgcatt cgtcctcagc acctcagcct aacgccgcgt
     9301 tcggcctaca gcaaccgctt caacgccaca ctgcaatcgg tgcactggca aggcgattta
     9361 acccatctgt tgtgtgacgt tgctggcgaa acggtgcgga tggtgttgac gcatgtcaat
     9421 ccgctgccgc gcgtgggcga caagctggcg ctgtggttcg aaccggatga tgcggtcctg
     9481 attgaggtat aaccatgtca ctcattttac ctctggaaaa accggcgctt aacctacgcc
     9541 cgctgctgtg gctgttgctc ccgttgctgg cgctggcgac gctgtttttc tggcctctgt
     9601 cgctcatcgt tgaacaggcg ctacgcggtg ccaatggcga gatcgggctc gagaccttcc
     9661 gccaggtggt cgactcgaaa cgctttgtcg gcgcgttgct gaacacgttg caaatcgcct
     9721 ttttcgccac cgccggttgc ctgctgctgg gcagcgtgat gtcgctgatt ctggtgttta
     9781 ttcctttccc cggcagcgag ttgattggtc gggtcgtcga tacttttatt gcgctgccga
     9841 ccttcctgat tacgctggcg ttcaccttta tttatgggtc agcgggtctg ctcaacggtg
     9901 cgctgatgag cctgtttgcc tttgagctac cgccggtgga ttttctctac tcgatgcagg
     9961 gtgtcattct ggcggagatc acggtgttca ctccgctggt gatgcggcca ctgatggccg
    10021 cgctgcggca aattgataaa agccagctag aggcagccag cattctgggg gcacacccgt
    10081 tacgggtgat tgggcaggtg attttcccgg cggcgctacc ggcgctgatg gctagtggca
    10141 gcctgtgcct gctgttgacc actaacgagt tcggcatcgt actgtttatt ggcgcgaaag
    10201 gggttaacac cctgccgatg atggtttaca gcaaagcgat tctggagtcc gactatacgg
    10261 tcgcctgcat gattgcgttg attaacattg tcttgtcgct ggggctgttc tccctctatc
    10321 gcctggcggc atcgcgtacc ggcgtaagga gccagccatg ctaatttggt cacctaaagg
    10381 acgcgcagcg gcgggcgttg tggctagcgt actgtttatc gtgttctttt tcctgccgct
    10441 ggcggtgatt ctgatgtcca gccttagcca gcggtggaac ggtattctgc cgagtggctt
    10501 cacgctgaac cactttgtta acgctctgca cggtgcggca tgggatgccc tacttgccag
    10561 cctcacgatt ggcttttgcg ccagcctgtt tgcgctgctt tgcggcgttt gggcggcgct
    10621 ggcgttgcgt caatatgggg tgaaaacgca gaaatggtta agtatggtgt tctatctgcc
    10681 gagtgcgatt ccgtcagtgt ccgtgggcct gggcattctg gttgctttca gccaggggcc
    10741 attgcaaatg aacggcaccc tatggattgt gctgacagcg cactttgtgc tgatttccgc
    10801 ctttaccttc agtaacgtgt cgaccggact ggcgcgcatt tccgccgata ttgaaaacgt
    10861 cgcgtcgagt ctgggggcat cgccctggta tcgtctgcgt cacgtgacgt tgccgttatt
    10921 gatgccgtgg atggtgtcag agctggcgct gagtttatcg ctctccatgg gggagttggg
    10981 cgcgacggtg atgatttatc caccgggctg gacgacgctg ccggtagcta tctttagcct
    11041 gaccgaccgt ggaaatatcg ccgacggcgc ggcgctgacc attgtgctgg tggccattac
    11101 gctgctgctg atgatgaagc tggagcgcat tgcaaaacgg ttggggtaga aataaaacgg
    11161 taggccgggt aggacatagc cgccacccgg caaaggaatt acgggcgata caccttcaca
    11221 ttggcaaacc cctgctcgcg cagatagagc gcctgcaggc gactcattac gccgcgttcg
    11281 caccatagca gccaggtttt gctctgatcg aggtcgccaa atttagtgct cagcttgtag
    11341 aaaggcagcg aaacgacgtc gacgccttcc actttcagcg gcttgtcatc ctgctcatcg
    11401 acagaacgga tatccagaat cacatcgttg gcgccaaaac cgctcacggt ttcaacttcc
    11461 accacctcct gctgggtctg ctgggcgatt tcacgaatat cgacgttgtt cgcttcttct
    11521 accaccttat cgagaatact gaagtcgaaa ttttcttctt cggcttcaat tttcgcttta
    11581 atggctttca ctgtcggact ttttgaaatc acgccacagt attccggcat cgtacgggca
    11641 aaatcttccg taccaatctg gcgcgccagg ttgataatgt gctctttatc gtaagagatc
    11701 agcgggcgca ggatcagcgt gtcagacacg ttatcgatca agcgcaagtt ggttagcgtc
    11761 tggctggaca cctggcccag cgcttcgccg gtcaccagcg cctgtacgcc gtaacgttcc
    11821 gccactttcg acgccgcgcg taccatcata cgtttgagca ccacgcccat ctggccgtcg
    11881 tcgactttct ccagaatctc gccgaccact ggttcaaagt taatcgccac aaaacgcacg
    11941 cgatgggagc tgccaaagcg gttccacagg taatgcgcca cctggcgaac gccgatttca
    12001 tgcgccgcgc cgccgaggtt aaagaagcag tagtgtacgc gacagccgcg acgcatcagc
    12061 atatagctgg agacgctgga gtcaaaaccg ccggagatca gcgacagcac gtcttcctgg
    12121 gtgccaatcg ggaaaccgcc aataccttca taacgccctt tgatcagcag caggcgatca
    12181 tcttccactt ccagatgcac cgtcacatcc gggttagtga gcttcacgcg cgctgattca
    12241 atatgctgat ttaatccgcc gccaacatag cgctccactt caatggagct aaactcatgc
    12301 ttaccgcgac gttttacccg cacgcagaag gttttgcctt caagctgttc gcgatactgc
    12361 gccaacgctt tctcgaaaat gtcgtgcata tcggtgaacg gcacatcttc gacttcaaga
    12421 atatggtgaa tccccgggat gcgggtcagc gcgtcgcgaa tcgccagacg ctggttttca
    12481 tctttggcgc gaacttcaat gttatcccag tgacggacaa ccgcgagggt ctcatcgtag
    12541 tgctttaaaa cgttacggat gttcccggtt aaaattttta taaagcgcaa acgcacagat
    12601 tggcttttga tagtgatttc cgggaacaat ttaatgataa acttcatggc ggtaatggtt
    12661 ctttagcaag ctatctaagg cttgtcgtgg agaaatagta cagcagccca tacctacggc
    12721 tgcatccagg cgcggaagta tatcaccatc acggacatct tgcgcatttc cccttaccat
    12781 tgcgcgttat ttgcttatca gtgcgagtcc gttaccatag acttgtgctg ccattacaga
    12841 gagtcaaaca gtcatcatgc cgaagaaaaa tgaggcgccc gccagctttg aaactgcgct
    12901 gagcgagctg gaacatattg ttacccgcct ggaaagcggc gatttgccgc tggaagacgc
    12961 gctgaatgaa ttcgagcgcg gcgtacaact ggcgcgtcag gggcaggcaa aactgcagca
    13021 ggcggaacag cgcgtgcaaa ttttgctgtc tgataatgaa gaggcttcac ctgagccttt
    13081 tatcgcggat aatgagtaaa tggactttac gcagcagcta caggcttgcg taacgcaagc
    13141 gaatcaggcg ctgagccgtt ttatcgcgcc actgcccttt cagaacactc ccgtggtcga
    13201 agccatgcag tatggcgcat tattaggcgg taaacgcctg cggccatttc tggtttacgc
    13261 caccggtcaa atgtttggcg tcagtacggc aacgctggat gcgccagctg cggcggtcga
    13321 atgcattcat gcctattcgc tgatccatga cgacctgcca gcaatggacg atgacgattt
    13381 gcgtcgcggc ctgccgactt gccatattaa atttggcgaa gccaacgcaa tcctggcggg
    13441 agacgcgttg caaacgctgg cgtttaccat tatcagcgac gcgccgatgc cggaagtcgc
    13501 cgatcgcgat cgtatcgcga tgatcgccga actggcaaac gccagcggta tcgccggtat
    13561 gtgcggcggt caggcattgg atctggcggc agaaggccag cggatcactc tggacgcgct
    13621 ggaacgcatt catcgccata agaccggcgc gctcattcgc gccgccgtta gacttggcgc
    13681 gttgagcgcg ggcgataaag gacggaatac tctgccgata cttgaccgct atgcagagag
    13741 tatcggcctt gccttccagg ttcaggatga cattctggat gtggtgggcg atactgcaac
    13801 gttaggtaaa cgtcagggcg cagaccagca gcttggcaaa agtacctacc ctgcacttct
    13861 gggtcttgag caagcccgga ataaagcccg ggacctgata gaggacgccc gtcagtcgtt
    13921 acatcagctg gccgcgcaat cactggacac ctcggcactg gaagcgctag cgaactacat
    13981 aatccagcgt gataaataaa ccccatatcc aatgagcttg cgatgagttt tgatatagcc
    14041 aaatacccta ccctggcatt ggtcgactcc acccaggagt tacgactgtt accgaaagag
    14101 agtctgccga aactctgcga cgagctacgc cgctacttac tcgacagcgt aagccgttcc
    14161 agcgggcatt tcgcttccgg gctgggcacg gtagaactta ccgtggcgct gcattatgtc
    14221 tacaacaccc cgtttgacca gctaatctgg gatgttggac accaggctta tccacataaa
    14281 atccttaccg gtcgtcgcga caaaatcggc accattcgcc agaaaggcgg tctgcacccg
    14341 ttcccgtggc gcggagaaag cgaatacgat gtgctgagcg ttgggcattc ctccacctcc
    14401 atcagcgccg gtatcggtat tgccgtggcg gcggagaaag aaggcaaaga tcgccgcacc
    14461 gtctgtgtga ttggcgacgg cgccatcacc gccggtatgg cgtttgaagc aatgaatcac
    14521 gcaggcgata tccgacccga catgctggtc attctgaacg acaatgaaat gtcgatttcg
    14581 gaaaacgtcg gcgcgctcaa caaccatctg gcgcggctac tttccggtaa gctttactct
    14641 tctctgcgcg aaggcggaaa aaaagtcttc tccggcgtac cgccaattaa agaactgctc
    14701 aagcgtaccg aagaacatat taaaggcatg gttgtgccgg gaacactgtt cgaagagctg
    14761 ggctttaact acatcgggcc ggtcgatggt cacgatgtca tggggcttat cagcacattg
    14821 aagaacatgc gtgacctgaa agggccgcag ttcctgcata tcatgaccaa aaaaggccgc
    14881 ggctatgagc ccgcggaaaa agatccgatc actttccatg cggtgcctaa atttgatccc
    14941 tccagcggat gtttgccgaa aagcagcggc ggtctgccag gttattcaaa aatcttcggt
    15001 gactggctgt gtgaaaccgc cgccaaagac agcaagctga tggcgatcac cccggcaatg
    15061 cgcgaaggtt ccggcatggt ggaattttca cgtaaattcc cggatcgcta ttttgacgtc
    15121 gctatcgccg agcagcatgc cgtcaccttc gccgcaggtc tggcgattgg cggctataag
    15181 cccgtcgtgg cgatctactc tactttcctg caacgcgcct acgatcaggt catccatgac
    15241 gtcgctatcc agaaactgcc ggtcatgttc gccatcgatc gcgccggtat cgttggcgcg
    15301 gatgggcaaa cacaccaagg cgcgttcgat ctctcctatc tgcgctgcat cccggatatg
    15361 gtgatcatga cgccaagcga cgagaacgaa tgtcgccaga tgttatttac cgggtatcac
    15421 tataacgacg gcccgacggc agtacgttat ccacgcggta atgcgcaggg cgtggcgcta
    15481 accccgctgg aaaaactgcc tattggtaaa ggtcttgtga agcgtcatgg cgaaaaactg
    15541 gcgattctga actttggcac cttaatgcct gaggcggcga aagtcgccga agcgctgaat
    15601 gccacgctgg tcgacatgcg ctttgttaaa ccgctggacg acacgttaat tctggagatg
    15661 gccgcgcagc atgacgcgct ggtgacgctg gaagaaaacg ccattatggg cggcgctggc
    15721 agcggcgtaa acgaagtgct aatggcccat cgtaaacctg tacctgtgct gaatatcggt
    15781 cttccggatt tctttatccc gcaaggaacg caggaagaag cccgcgcgga actggggctt
    15841 gacgccgcag gcattgaagc caaaatcaag gcctggctgg cataatctcc tctttgctcc
    15901 tgctatgctt gaagagtgac gggtataaca ggagcggagt catgcaatac aacacgttag
    15961 gaaataccga tcttcgggtg tcccgccttt gtctgggctg tatgacattc ggcgagccga
    16021 gtcgcggcaa tcacgcctgg acgcttcccg aagagagcag ccgtcccatc atcaagcgcg
    16081 cccttgaggg cggcattaac ttttttgata ccgccaacag ctactccgac ggcagcagcg
    16141 aagagattgt cggtcgcgcg ctgcgtgatt ttgcccggcg cgacgaggtg gtggtagcga
    16201 cgaaagtctt ccatcgcgtc ggcgatctgc cggaaggatt gtcccgcgcg caaatcctgc
    16261 gctctattga cgatagcctc acccgtctgg gaatggagta tgtcgatatc ctgcaaatcc
    16321 accgctggga ttacaccacg ccgatagaag aaactctgga agcgctaaac gacgtggtaa
    16381 aggcgggtaa agcccgctat atcggcgctt cctcaatgca cgcctcacaa tttgcccagg
    16441 cgctggcgct acaaaaacaa cacggctggg cgccgtttgt cactatgcag gatcactata
    16501 acctgatcta ccgcgaggaa gagcgtgaga tgctaccgct gtgctggcag gaaggggtcg
    16561 ccgtgattcc gtggagtccg ctggcgcgcg ggcgcttaac tcgcccctgg ggagaaacca
    16621 cggcccggct ggcctcggat gacgtgggca aaaatttata cgatgaaagc gataaaaatg
    16681 atgcgcaaat agcggaacgg ctggctggcg tcagcgaggc gcttggcgca acgcgagcgc
    16741 aggttgcgct ggcctggctg ctcagcaaac gaggcgtcgc cgcgccgatt atcggcgctt
    16801 cgcgtgaaga gcagttagat gagttgctga atgccgttga tttaacgctc aaaccggagc
    16861 agattgccga actcgaaaca ccgtacaagc agcatccggt ggtgggattt aaataatctg
    16921 ccattgcccg atggcgcggc gcttatcggg cctgcgaaat cgacatattg ttcggaggca
    16981 ggccggataa ggcgtttatg ccgccatccg gcaaaccctt taaataatac cgagcggcca
    17041 gtgatgaccg ataaaataca gtatgccagc ggatatcacc ccggcgacga tatcatcgat
    17101 cattatcccc atgccgccgt gcacgttgcg atcaaaccaa cggatcggcc agggtttcca
    17161 catatctaga atgcggaaaa taacgaaccc ggcagccacc cattgccagt ccgtcgtcgg
    17221 caacgccatt agcgttatcc acataccgat aaattcatcc cagacaatac tgccgtggtc
    17281 gtgtacgccc atatctttcg ccgtctgatg gcaaagataa acgccaatgc agattccaaa
    17341 catcacgacc agcgaataaa gctgccacgg cagaaacgtc atcagatacc agaaggggat
    17401 cgccgccaga gagcccatcg tacccggcac cacggggctc agcccgctgc caaagccggt
    17461 agcgagcaga tgccacggat tgcgcaaatt caggcgactt ttcgcaacat ctttatggcg
    17521 tggcaaaatg gtcatatcct ttccagtcga aggtgacagg cattccgtca cgtacaaaat
    17581 tcagcccttc aatatctgcg ctcatttggc ctatgcaggt aaagggaaca cccagttgac
    17641 caatggcgac atccagcgcg ccacggttca gttccggcac cgtaaagcac aactcatagt
    17701 cttcgccgcc ggaaagcgcc caacgcagct cctgcccgtc atcaacatgg cgcatcatcg
    17761 catcggattt tggcaacgca tcaacatcca ctcttgcccc acagccgctg gccttgacga
    17821 tatgccccag atcggaaatc agaccatcgg aaagatcgat agccgcgctg gcgatgtcac
    17881 gcagcgcctg gccgtgtaaa atacgcggcg tcgggcgtaa atgccgttga attaaatagt
    17941 gagcatcggt ctcctccgac acctgtagcc ggttttgcaa aaccgccagc ccggcagcgc
    18001 tgtcgcccgg cgtaccggtg acataaatcc agtcgcccgg cttcgcgcca gatcgcttga
    18061 gcgcgcgccc tgccgggata taaccgtgga tacccagcgt catcgacagc ggtccacgcg
    18121 tggtgtcgcc gccaatgagc tgcatatcgt agtaattcaa tagcgcaaac aggctgtcgc
    18181 taaaagcctc cagccacggc tcatccactt ccggtagcgt taacgccagc gttaaccagg
    18241 ccgggtcggc ccccatcgcg gccagatcgc ttaaattcac cgccaacgct ttataagcca
    18301 gatcggcagg atcgatatca gggaggaagt ggttgcccgc caccagcgta tcggtactga
    18361 tcgccagggt ctgcttttca ggaatattca ggagcgcgca atcgtcgcca ataccggttt
    18421 caacatcaag acgagagctt cttacacggt caaaataacg ggcaatcagg gaaaactcgc
    18481 cacatgccat acgttatgcc tcagcagaaa aaaagaaaag gccggagacg gcgggtatcg
    18541 atcgcccgct atctttccgg cctgtgaatc actttttgtt gggacgaatc accggagctg
    18601 ctttatccag tacgccgttg acgaatttgt ggctgtcttc agcgccaaag gttttcgcca
    18661 gttcaatcgc ttcgttgatg gccactttat aaggcacatc gctgcgtttt gacagctcaa
    18721 acaacgcaat acgcagcacg gctttttcaa cctgtcccag ctcttcaagc aggcgggaca
    18781 gatacggttt cattaaacca tccaggtacg cgctgttagt cgccaccccg gatagcagtt
    18841 cacggaaata gagaacgtcg acgtctttta cgtcctgttc cgccaggaac tggtattcaa
    18901 catcagcgat gtcgttctgg gacaactgcc aggagtaaag cgcctggacg gcacactcac
    18961 gggcgcggtg acgagcagca ggtttcacgg aattcccctt acaaaaaatc aggccttaat
    19021 ggctttcaat acattaatca tttcaagcgc ggtcagcgca gcttctgcgc ctttattacc
    19081 ggcttttgta ccagcacgtt cgatggcttg ttcaatactc tcggtggtca gaacaccaaa
    19141 ggctaccggc acgccgctgt cctgggcaac gcttgccagg ccattgctgg cgccgcctgc
    19201 cacatattca aagtgcgcag tccccccgcg aatcacggtt cccagcgcaa ccacggcgtc
    19261 gtatttaccg cttttcgcca gcgcttcggt cgccagcggc agttcataag cgccaggcac
    19321 ccacactacg gtaatattat catcttttac ctgaccaata cgcgtcaggg catcaaccgc
    19381 gccatccagc aggctgtcgt tgataaactg attgaaacgc gcaatagtga tggcgacacg
    19441 agcgtcaggg gctgcaacgt tagctttaat aatgttcata ttctctcttc cagggttcat
    19501 ttggccccgc aggggggcgg attttatcat aataatttga gcgctgctcc cctttcgacg
    19561 ggagaactca tgcgctcacc atatgcaggc aaacatccgg gccgacatga cgtatttcgc
    19621 tgaaggtaaa ttgcggcgcg tcggcgagct tctcaagccc cggcaattcg cataatcccc
    19681 gcgcctgggt tcccaacaat ttaggcgcga catagacaat cagttcatcc accagcccgg
    19741 cttgcagcaa cgcgcccgcc agtcccggtc cggcctcaac ccatatgcta ttaatctgct
    19801 gcctgcctaa ctgcatcatc agcacaacca gatccaaatg tccgttgtgc gccggcacgc
    19861 tgatagtacg aaccgaatcg ggccacgcgt ggctatcttc ctgggtacgc gcaatccacg
    19921 tttcgccagg ctgctgcaca atacgatgcg caggcgttac ccggttttgg ctgtcgataa
    19981 caattcgcac cggctggcgc agattttcct gcgggtaaga cgcctgtgta gaggcgtcta
    20041 actccgccca acgcaccgtc aaggccggat cgtcagccaa taccgtcgcg ctactggtta
    20101 aaatagcgtg gctttgcgca cgcaagcgct gaacgtcgcg ccgggcctgc ggcgaggtga
    20161 tccactggct ttcgccgctg gccatcgccg tccgtccatc cacggaggca cccagtttaa
    20221 gctgaagata agggaatccg gtacgcatcc gtttgaggaa gcctttattg agcgcctccg
    20281 cttcactcat cattaacccg tggctgaccg caatacccgc ctgttgcagg cgatacagcc
    20341 cgcgcccggc gacctgtggg ttcgggtcct gcatcgcggc gaccacgcgc gcgacgccag
    20401 ccgcaatcag cgcatcgcaa catggcggcg ttcgcccatg atggctacag ggttcaagcg
    20461 tgacataggc ggttgcgcct ttggcttttg cgcccgccat ccgcagcgca tggacctcgg
    20521 cgtgcggctc tccggcgcga tggtgataac cttcgccgac gatgtcgcca ttgttaacaa
    20581 tgacacagcc gacattaggg ttcgggtgag tggtgaaacg tccacgctgc gccagtttga
    20641 gcgctcgcgc catgtaaaac tcatcctgca tggcttagtc ctgtaggcga gcgatttctt
    20701 cgccaaagtc tttgatatct tcgaaactgc gatagacgga ggcaaagcga atatacgcga
    20761 ctttatcgag ttttttcagc tgctccatga ccaggttgcc aatcatcttg ctgggaactt
    20821 cacgctcccc agtggcacgt aattgtgact taatatggtt caatgccatt tcaacatcat
    20881 ctgcgctgac gggtcttttt tccagcgctc tcaacatgcc gctacgcagc ttatcctcat
    20941 taaagggttc gcgcacatcg ttgcttttta tcacgcgcgg catgaccagt tcagccactt
    21001 caaaggtcgt aaagcgttca ttacacacca gacactgccg acggcggcgc acggacgagc
    21061 cctcgcctac aagacgagag tcaatgactt tggtatctac ggcgaaacaa aatgggcaat
    21121 gcatacggcg tcctgaccag atgatttagg aaatgctatt ttaccctgaa ctggcgcgac
    21181 aacaaaggcg gagcgctttt gagataaagg atcggtgcct ttgtgcgtat agcgcactac
    21241 cattacgcta tcggaccacg aaggaaatga tcgacatgac aagacgttac ctaagaattc
    21301 tcctggtggg aagtctcttg agcctgaccg cctgcgcgcc gcagagcgaa gttcgccaga
    21361 tgcatcaaag cattagcacc ctgaataaag agatgaccca actgaatcag gaaacggtaa
    21421 aaattaccca acaaaataag ctgaatgcgg attcaacccg cggcgtctat ttgttgcctg
    21481 gcgccaatac gcctgcccgg ctggagagtc agatcggtac gctacgtatg acattgctgg
    21541 aaattacgcc tgtcgctgac ggcgctcacg caacgttacg cattcagggc aagtcccgcg
    21601 atccgctacc ggcattcagc gctaccgtag agtacgggca aattcagggc actacggaga
    21661 actatcagga ggtgaatgcg cagagccttc tggtaaatgc gcccgccagc ttgctggcgc
    21721 ccagtgatgt caatattccg ttaccgttga aggggatcac accggcgcag ttaggcttca
    21781 ttcgcatcca tgatattcag cctgttaatc aataaacgtt ctggcggagc gttttgtgcg
    21841 ctccgcaaca tcctctgcgc aacttttgtt gcccttctga catttccgta atttatgaca
    21901 cggattgtta atattcatga aagatagtac tgtcgccgcg cctaaagtgc gcaaacgtga
    21961 acgcaatcga ttacgtaaat gatagatatg tgaaacaaga catatttttg tgagcaatga
    22021 tttttataat aggctccgca gaaacacgaa atatttagaa acgcaaattg cgttcttttc
    22081 actcccgcaa gggatttcaa acagtggcat acatatgaaa aaaactttac tcgcagtcag
    22141 cgcagcgctg gcgctcacct catcttttac tgctaacgca gcagaaaatg atcagccgca
    22201 gtatttgtcc gactggtggc accagagcgt aaacgtggta ggcagctacc atacccgttt
    22261 ctcgccgaaa ttgaacaacg acgtctatct ggaatatgaa gcatttgcca aaaaagactg
    22321 gtttgatttc tacggctata tcgatattcc caaaaccttt gattggggta acggcaacga
    22381 taaaggtatc tggtccgacg gttctccgct gttcatggaa atcgaaccgc gtttctcgat
    22441 tgataagctg accggcgcag acctgagctt tggcccgttt aaagagtggt atttcgccaa
    22501 caactacatc tacgatatgg gcgataacaa agccagccgc cagagcacat ggtatatggg
    22561 tctggggacc gatatcgaca ccggcctgcc gatgggtctg tcgctgaacg tgtatgcgaa
    22621 atatcagtgg caaaactacg gcgcgtccaa tgaaaacgaa tgggacggct accgtttcaa
    22681 agtgaaatac ttcgtcccca tcaccgatct gtggggcggt aaactgagct atatcggctt
    22741 taccaacttt gactggggat ctgatttagg cgacgatccg aaccgtacca gcaactccat
    22801 cgcttccagc catatcctgg cgctgaacta cgatcactgg cactactcgg tcgttgcgcg
    22861 ttacttccat aacggcggac agtggcagaa tggcgccaaa ctgaactggg gcgacggcga
    22921 tttcagcgcg aaatctaccg gctggggcgg ttacctggtc gtgggttaca acttctaaac
    22981 ctgcaaaaaa gccagaggtc gtcctctggc ccgtttcggg cgcatgctgc catgcggcgg
    23041 cgagtcgcgc ccacttcaca ttacttccgg cgatgccacc agcctaaaaa cagacctgtc
    23101 gcaatcccga ccagcgttgg tgccgccaga tcgtgccaga tagtaatgct caactctgtg
    23161 agcgtcatat tgccgccttt gttgcaatgg caacggttcg cggctatcct caacttgtct
    23221 ggggtcaagt tagcccccgt aatgttgccg gtgaataccg aacaatgtgc gggggttttc
    23281 tctttccagc gacaaggcca ccggggatca agcccccgca acattgcgcc tcaccgggtt
    23341 gccccggctt accgctgatt ctactctgct cgccagtatc ggcaggactt aaaaacaaaa
    23401 aaatcccaac cttgcgatcg gaattccagt gacaatgtat gcgttacagg acgtttgggg
    23461 ctggcgacaa actccggggc tgaaaaaatg tcagattgca tccgacctac gaaaaccaat
    23521 aattcattta tattgcggat tccgttgggt ggagtggagc gaagcgtaac ctaacattca
    23581 acagcaccaa cagctttgtc agcagtctgc ttatttcttt ttgttcatca tcgctttcag
    23641 atcggcaaac gggttataag tcgcctcgcc gacatctttt tgcgcatctt ccccggcaat
    23701 gaccgtcgaa ccgtactgat cggcttcggt atatttagaa tgctcatgat cgtggcagta
    23761 gaggcacaat agctcccagt tactgccgtc ttccgggtta ttggtgtggt catgatcgat
    23821 atgatgcacc gtcagctcac gcagatttga atacacaaac tcacgggaac aacgtccgca
    23881 cacccacgga aacagcttca gcgctttttc acgatagccg ctttccaggc gcgcgtagtt
    23941 ttttgggatg atagccataa ttaacaggta cctgaataat acaaagggtt atgcgcagtt
    24001 tcccgcgaag ccgggctttt agcaatgatt ctgtgcaact tatatatcca ggtaaggaag
    24061 gctatttcag gcaaactgat gaccaatcaa cccgttttac aagcgttgga ggtatcgcta
    24121 tcacatctta cggcattttt tcgtgctcga ctttacgcaa aaaatcacgc aaagaacggt
    24181 cgattgtttc acgaaatcgc cggttaagcg gagtaatttg taaacagcga tcgaggcgaa
    24241 aacaccgata gtcttcccgt ctctcacacc aggcaaccag tagccagtgc tctccccaga
    24301 aaaacaatcc cagaggttgt atatcccgcg aagagagatg ccccgcttca tcacgataat
    24361 gtagcgccaa cacctgctgc gccgaaacag cctgatggat aagatcaaac gcgctgcgcg
    24421 aatgtggaga tgtacccaaa tccggagcgt aaatccgtgt ctgctccgct ttacgacggc
    24481 tctcttccgg taaaatagcc aacacttttt cctgggcgga ttcaagctcg cgcgatagcg
    24541 aatcgccacc ccaggttttc aataaccgta tagccaccat cagtgcttcc gattcacgat
    24601 gggtaagcat caagggcggc agatcaaaac ccgccattaa acggtatccg ctccccgctt
    24661 caccttcgac aggcacaccg gataacgaca gatcgcgaat atcgcgataa atcgtccgtt
    24721 cagaaaccgc aagccgctgt gccaacagcg ctgccgtcgt cagtcgtcta ccccgcaaaa
    24781 tttgcacgat ctgaaacaaa cggtcagcgc gtctggtcat attgactctc tacatttagc
    24841 aaatatcacg caggttgatg taaacctatt cggttacctt cgctgtcaat aaacaacgcg
    24901 atggttccaa tgtcatctcc gggaaccatg ggttccagaa cacacttgcc accggcaagg
    24961 acgacacgtt caatcgaggc taacaaatcg gcggtatgca gataaataac gactccctgc
    25021 gcaactggag cgacatcatc ctgctttatc agcgctccgc cgggtccggg ttcagcatac
    25081 gggaatacgg ccaggtccgc cccatccatg gtttcccgac gtaacgatat ctgcatcact
    25141 tgctcataaa aggcgattgc acgcgccata tcagtaactg gaatttcaaa ccagttaatc
    25201 aagtttttca tacatcctcc tgcgagtgtg ggtaaattca tgaggagtgt atgacagggc
    25261 tcctgacagc atactgtcag taatgtttat cgtcatggta cataaataaa aaatcccgat
    25321 cgcatgaccg ggattcagat aacacttaaa tacgtgttta cggcagaatg gacggctgat
    25381 ccgccccttc tttttcgact ttctgctgca gcatatgctc gcgcttcata ccgagtttca
    25441 gcgccagcgc cgatgcgaca tagatagaag atgccgtacc aatagagaca ccgatcagca
    25501 tcgtcagcga gaagccttcc agtaccggac cgccgaagag gtacagcatc agaattacca
    25561 ctaacgtcgt accggaggta atcaacgtac ggtgtagcgt ctgggtcagc gacacgttaa
    25621 agatttcgta aggcgtcccg cgacggattt tgcggaagtt ttcacgaata cggtcggaga
    25681 ccacgatact gtcgttcagc gagtaaccga tcaccgacat caacgatgcc acaatggtca
    25741 ggtcaatctc aatatggaaa agcgacagta tccccagcgt aatgatcacg tcgtgcgcca
    25801 gcgcgatgac cacccctgcc gccagtcgcc actcaaagcg gaaaccgaca taaacgagga
    25861 tagagatcaa cgccaccagc agcgccatgg cgccggtttg cgccagatcg gcgcccacgc
    25921 ttggccccac gaattcaata cgcttcacgg ccgcgttctg gttggtggct tcattaatga
    25981 tcgtcaccac tttgctaccc agtacctgac cgccggtttc accttcggtt ggcggcatac
    26041 gcaccataat gtcgtgactg ctgccaaagt tctgcaactg cggctcttca tagcccgctt
    26101 tttgcagcgc ttcgcgcatc acgtccattt cagccggttt ttccagcgtg atttcaatta
    26161 ccgtaccacc ggtgaaatcc agcccccagt taaacccgcg tacgcccata atgacaatgg
    26221 ccgcgatcag caacagcccg gagatgccga atgcccagaa gtcccagcgc ataaagtcat
    26281 agactttacg gccgtggttt agttgttcaa cagtgtattc ctgtgccaca tcgcactcct
    26341 cagattgaca gcttagtgac gcgcttgccg ccatatagca ggtttacgat agcacgcgta
    26401 ccgataatcg cggtaaacat cgacgtcgcc acaccgatac cggtcgtaat cgcgaaccct
    26461 ttaattgccc cggtaccgac agcatacaga atgatgactt taatcagcgt cgtgatgttc
    26521 gcatcgaaga tggaactgaa cgcgccggca tagccttcgt ttatcgcctg ctgtaccgtg
    26581 cggccattac tcaactcttc tttgatacgt tcgttaatca gaacgttggc gtcgaccgcc
    26641 accgcaaggg ttaacacgat acccgcaatc cccggcatac tgagcgttgc ccccggcaac
    26701 agcgacatga taccgacaat caacaccagg ttagccacta acgcgctggt cgcaatcaga
    26761 ccaaacttct tatagaagaa gatcatgaac aggatggaga ccaccagacc ggccagacag
    26821 gcttccaggc cctgcttgat gttctgcata cccagagtcg ggccaatggt gcgctcttca
    26881 acgatctgaa tcggcgcaat cagggcaccc gcacgcagca acaacgagag ctgacgcgct
    26941 tcgttcgggt tgctgatacc ggtaatacgg aagctgttac ccagccgaga ctggatgttg
    27001 gcaatgttaa tcacctcttc ctgtttcacc agtacggcgc gaccgttagc gtctttctta
    27061 ccgctgtctt tatactccac aaacagggtc gccatcggtt tgccgatatt gtccttagtg
    27121 aagttagaca tgatattgcc gcctgcgcta tccagcgaga tgttaacctg cggttggtta
    27181 tattcatcct ggctggacgt cgagtcggtg atatggtcgc cggtgaggat cacgcgtttg
    27241 tacaatacca ccggctgacc ttcgcgggtc tgtttcactt cggaatcgcc cggtacgcgc
    27301 ccggcagcag cggcggcctg gtcaacgttg gtattcacca gacggaattc cagcgtcgcg
    27361 gtcgcgccga gaatttcttt cgcgcgagcg gtatcctgga tacccggcag ctcaaccaca
    27421 atacggtctg cgccctggcg ttgtacgaca ggctccgcga cgcccagttg gttaacacgg
    27481 ttacgcagaa tattaatgtt ctgctgaacg gcgtattcac gcgcttcgct caggcgcgca
    27541 tcggtcatta ccgcgcgaag ttgattgccg ctctggctgg aaatcaccag gtcacgatga
    27601 cgcggcgtca gataggcgat cgcctcatca cgcgctttgc tgtcacggaa cgtgatgctc
    27661 agcccataat tattttcttt acgaacggtg gtataaggaa tgcctttttc acgcagatcg
    27721 ctgcgcaggc tatcgatatt ttgttcctgg agtttaccta acgcggtatc catatccact
    27781 tccatcagga agtgaacgcc gccgcgcaga tcaagaccga gcttcatcgg atcggcgtga
    27841 atagccgcca accagcgcgg cgtagccggc gcaaggttaa gcgccacgac atatttatcc
    27901 cccagcacgc tcatcagcgc ttcacgggcg cgtagctggg tatcggtggt gtcgaagcgc
    27961 gcaagaatag cgccctcttc cagtgccaca gacttagcgg gaattttttc ttcttgtaac
    28021 gttttctgga cctggatcag cgtttgctca ctggcggcga cgccgcgcac gccagtgatt
    28081 tgaacagccg gatcctcacc atacaggttg ggaagtgcgt aaagcaggcc gacgataatc
    28141 acgacgacca gcatgatgta cttccacaaa ggataacggt ttaacacggc agttcccttt
    28201 gggaaaacga aatattacag cgccttcatg gtgcctttcg gcagaacggc agctacgaag
    28261 tcacgtttga taaccacttc cgtggtgtca ttcagcgcga tggcaatgta gccggcttcc
    28321 gctactttgg tcactcgacc aaccagaccg ccattcgtca gaacttcatc acctttcgca
    28381 atggagtcca tcagcttttt gtgctctttg gtgcgcttct gctgcgggcg caggatcatg
    28441 aaatagaaaa tcagaccaaa caccaccagc attaaaatca gagacatcgg gctgccctgc
    28501 gccggagcac ctgttgccgc taccgcatca gaaataaaaa agctcattca aattccctca
    28561 ttattaaaat taatcaacgt tcaaaggtgg aacgggtcgc ccctgacgtt ggtaaaactc
    28621 ggttacgaag ctctctaatt taccctcttc aatagccttg cgtaaacccg ccatcaaacg
    28681 ctggtagtaa cgcaagttat gaatggtatt gagacgcgca cctaatattt cgttgcaacg
    28741 gtcgagatga tgcaagtaag cgcgtgaata attgcgacag gtgtagcaat cgcactcggc
    28801 gtcaagcggg ctgatgtcgc ttttatgctt tgcattacga atcttcacca cgccgtcggt
    28861 cacaaacaga tgaccattac gggcatttcg cgttggcatg acacagtcaa acatatcaat
    28921 accgcgacgc accccttcca ccagatcttc cggtttaccc acgcccatca ggtaacgcgg
    28981 tttgtcagcc gggatctgcg ggcaaacgtg ctccagaatg cggtgcatat ctgctttcgg
    29041 ctcaccgaca gccaaaccgc cgacagcgta gccatcaaag ccaatctcta ccagaccttt
    29101 caccgagata tcgcgtaaat cttcgtaaac gctgccctga atgatgccaa aaagcgcatt
    29161 cttattgcca aggctatcaa aacggtcgcg gctacgcttc gcccaacgca acgacatctc
    29221 catcgagcgt ttagcatagt cccagtctgc cgggtacggc gtacattcat caaagatcat
    29281 cacgatatcg gaaccgagat cgtactggat ctccatcgac ttttccggat cgaggaaaat
    29341 cggatcgccg ttgatcgggt tacggaagtg cacgccttgc tcggtaatct tacgaatatc
    29401 gccgaggctg aagacctgga agccgccgga atcggtgaga atcggccctt tccactgcat
    29461 gaaatcgtgc aggtcgccgt gcagcttcat gatttcctga cccgggcgca gccacaggtg
    29521 gaaagtgttg ccgagaataa tctgcgcgcc ggtcgcttcc acttcttccg gcgtcatgcc
    29581 ttttaccgta ccgtaagtac ccacaggcat aaaagcaggc gtttccacta cgccacgatc
    29641 aaacaccaga cgaccgcgac gcgcgcgacc atcggtggta tctaactcaa atttcattat
    29701 cactcctgcg tcagaaaaac agtccgacgt ttaacgactc gctacggaat gattccatag
    29761 ctaataaatt cccgaaggcg tcatcggcgc agccagtttg gagtcggcca gcgcacaacc
    29821 accggagcgt acacgcagta cgtgaggatg gcgagcactg cccggcgtca aaatggcaag
    29881 tgagatagcc ttcttacgga cgctcagaaa tagcctgcgg attgcacgtg ataaacatcg
    29941 cgtccccgta gctaaaaaag cgatattttt gttctaccgc agtcttatag gcattcatgg
    30001 tgtgttgata accggcaaat gcggaaacca gcataatcaa cgtcgattcc ggcagatgga
    30061 agttggtgat cagcgcatca atcactttgt attgataacc tggataaata aagatttgcg
    30121 tatcgccgaa gaatggctct atcaaatcgc tttttgccgc ctgcgccgcg ctctccagtg
    30181 agcgtaccga ggtcgtgccg acggcgataa cccggttgcc gcgcgctttc gccgccagca
    30241 ccgcgtcgac cacctcttgc ggcacctcag catattcgga gtgcatgatg tgatcttcaa
    30301 tggtatcgac acgcactggc tggaaagtgc ccgcgccgac gtgtagcgta acaaacgcca
    30361 tttcgacacc tttctcacga agcgccgcca gcagcggctc atcaaagtgc agccccgcgg
    30421 tcggcgcggc gacggcgccc ggtttttcac tgtaaaccgt ctgatacagt tcgcggtcgg
    30481 cgtcctcgtc cggacggtcg atatacggcg gcaacggcat atggccgatg gcgttgagaa
    30541 tatccagcac cggacgcggg tcattaaact caacttcaaa cagagcgccg tgacgcgcgg
    30601 tcatggtcgc gtgaatactt tcgtcatcgc ccagtagcag ttccgtgccc ggttttggcg
    30661 ctttagaagc gcgaatatgc gccaggatgc gtttatcatc gagcatacgt tcgaccagca
    30721 cttctatctt gccgccgctg gctttacggc caaacaggcg cgccgggatc acgcgggtat
    30781 tattgaagac cagcaaatcg ccagggttga gcttatcgag cagatcggtg aaagtaccgt
    30841 gcgtcagcgc gcccgtcggc ccctctaatg acagcaaacg gcagcgactg cgttccggct
    30901 gtgggtagtg ggcaatcaag gattcgggta gttcaaagga aaaatcggta acgcgcatga
    30961 ctctgactca gactaaaata agaggcgggt agtctagtgc cggggcgttc ccgctgcaac
    31021 cgttacccgc tttttggaca gagaatcaat aatgaatttt cttgctcacc tgcatctggc
    31081 gcaccttgcc gacagctcgc tttccggtaa tctgctggcc gattttgtcc gcggtaaccc
    31141 ggcaacgcat tatcctcctg acgtggtaga gggtatttat atgcatcggc gtattgacgt
    31201 catgaccgac aacctgccgg aagttcgtga ggcgcgagag tggttccgcc atgaaacgcg
    31261 gcgcgtggcg cccattacgc tggacgtcat gtgggatcat tttttatcgc gccactggac
    31321 gcaaatctct cccgattttc cacttcaggc gtttgtcggc tacgcccatg cgcaggtcgc
    31381 gacgattctg cccgactccc cgccgcgctt tgtcaacctg aatgattatc tttggtcaga
    31441 aaaatggtta gagcggtatc gcgatatgga tttcattcaa aacgtgctga atggcatggc
    31501 gaatcgccgt ccccggctgg atgccttgcg tgattcctgg tacgatctgg acgcgcacta
    31561 cgacgcgtta gaagagcgct tctggcattt ttatccgcgt atgatggcac aggccgcccg
    31621 caaagcgctg tgacggcctg atagcgaggg cgtgcgtcag atccgccgtt ggcagaaaga
    31681 tcgttcgctg tcataaagga gtcatcatta cgatttataa tgacccgatc gataggcaaa
    31741 agctgtctca ttgattgtca agaccgcatt gttttgtcgc ttcgccctcc ctatactgcc
    31801 cgcgttgcgt tctaaaaccc ttaatattgc aggagaatta ttatggtact ggttactcgt
    31861 caggccccgg atttcaccgc tgcggcggta ctgggtagcg gtgagattgt tgataaattc
    31921 aacttcaaac agcacaccaa tggtaaaacg accgttctgt tcttctggcc gatggacttc
    31981 acttttgttt gcccgtctga gctgatcgcc ttcgataaac gttatgaaga attccagaag
    32041 cgcggcgttg aagtggtcgg cgtttctttc gactctgagt tcgtccacaa cgcatggcgt
    32101 aacacccctg tcgataaagg cggcattggc ccggtgaaat acgcaatggt cgctgacgtg
    32161 aagcgtgaaa ttcagaaagc ttacggtatc gaacatccgg acgaaggcgt tgcgctgcgc
    32221 ggctctttcc tgattgacgc aaacggtatt gttcgccacc aggtcgtaaa cgatctgccg
    32281 ctgggtcgta acatcgacga aatgctgcgt atggtcgacg cgctgcagtt ccacgaagag
    32341 cacggcgatg tctgcccggc gcagtgggaa aaaggcaaag aaggcatgaa cgcctctccg
    32401 gacggcgtgg ctaaatacct ggctgagaat atttccagcc tgtaagtcag tgcattgata
    32461 aaaggctcgc gaatgcgagc cttttttatg cgtgaggtat tatgaaccac ctcgcctcaa
    32521 cgattcatcc ataccgtcgc ggaaatcgcg ggtaaactaa gtcttccctc gcggatgtca
    32581 ccgcttcccg ttttacattg ccatccggcc acgttcagca acggcaacgc ttccagcgcc
    32641 acttcacagg cctcgccccg gttaatcgcc accagcgccc gctgctgctg ataaactcgc
    32701 acgaatacca ctacgtcacc ttcggcatac agcgcctggc atccgccacg acgcagcgcc
    32761 agactgctct ggcgcagttt cgccatacgc tggtacagcg ccagcaagtt gccgtcctgc
    32821 ttgcgttcat cccatgggaa cggtttgcgg cacatggggt catttgcgcc gtccacgccg
    32881 acttcatcgc cgtaataaat acatggcacg ccgggccagg taaacagcca gaccaccgcc
    32941 agcggcaggc gcgccgcgtc tttacccagc agggttttaa agcgcgcagt atcatggctg
    33001 tcgagttgat taaacatgcg cagttgctgc tggtgcgata atccggcgcg gtagttatcc
    33061 atccacgcga tacaggtccg ggcatcaata tgctgtggtt cgtaagcgat atcagtattg
    33121 gcgagaaatc cccacagcgg gaaggtgaag ccgcgataat tcatggcggc atcttccgca
    33181 tcggcctgta gccactgccg cgcatcgctg aaatgttccc ccacaatata ggcttcaggc
    33241 tgcgcctctt ttgccgcccg ggtaatgccg gcgacgtgct gcaaattgtg gcgcgccccg
    33301 cccgcctcgc ccagcatatg tacgacatcc agccgccagc cgtccatatt ccacggtgcc
    33361 tttagccagt gacgaacgat actgtcctca ccgcgataga tctcatccac cagcgtttct
    33421 gattgataat cgagtttcgg caggctcgga taacccagcc agtccagcgc cacgccttgt
    33481 ggtgaaaagg agtaccagtc gcgccacggc gagtccgggt gatggcacgc gccgccagtg
    33541 ctgcggttat gcctgtcaaa ccacgcatgc gagtcgccgc tatggttaaa cacgccatcc
    33601 agcaccagcc tcatgccctg tgcttgcgtt tcacgccgca ggcgtagcag cgcccgatcg
    33661 ccgccaaatt gcggatcgac atggcgataa tcttccgtgt cgtacttatg gacgctcggc
    33721 gcggtaaata ccggattcag atatagcgct gtgacgccca gttttttcag atacggcagc
    33781 ttctcacaaa tgccattcag acagccgccg taaaaggtgg aaccgcccgc ctggggggtt
    33841 aaaggatcgt cccagtcgcg cagcacaatc tcctgacccg cggcatgatg gtaatacact
    33901 cggtcctgat cggcttcacg cgtcgcgctg cgggcaaaac gatccgggaa gatctgataa
    33961 aaaatttgat cggcgaccca ctgcgggccg ctatccggca catcaaccgc aaattgttcc
    34021 agacgcgcgg gtggaaagca gctaaatccc tgcggcgtaa accatcgctg gcggtcatgc
    34081 caaagcaatt taaagctgta acggcgacgg ggctgcccta acgcgatatt gagcgtcgct
    34141 cgccacgccg tcacgcccgg ctgcggctgg cggcgctgtt tgcgcatcgc cagtgagatt
    34201 tcttcgttat cgaattctga gcgcaacgtc acgcgagacg gcggattttc tccgctcagc
    34261 cacagcgtaa tggttaattt atcgttatgt tgcttaacaa acggggcaac cggtaagtgc
    34321 caggcattca acatctcgta tcccctctac taaaaatggg gccaccttgc cacagagatt
    34381 taaaggataa ctcatcatcc gggggtttat taggggagga gactccagga ggagaaacgg
    34441 ctccgcttat ccggcctgcc gttgcctgca gaccggataa ggcagagaaa aacgactacg
    34501 cctgcgccaa ttgacggtcg cgacggcgtt taaatatcca gccaatcaac agcagaacta
    34561 tccaggcgaa gcccacatac agtgagatgc gggtattcgg atggtagccg ataagcgcaa
    34621 taatgaagac caggaaaatc agacccgcta tcgtcgttac gacaccgccc ggcaccttaa
    34681 acttcagcgc ttttacctct tccggcggta aacgacgacg gaaggcgatt tgcgacagca
    34741 ggatcataat ccatacccat accgtcgcaa acgtcaccag cgaggcaatc accaggaaga
    34801 cgttttccgg catgatgtag ttcaggtaaa ccgcaaacag cagcgcaatc gtcatcacca
    34861 gcacagtgac ccacggaata ccacggcgtg acgttttggc aaagactttc ggcgcgctcc
    34921 cctgctccgc cataccatgc agcatacggc ctacgccaaa cacatcggag ttgatagcgg
    34981 aaagcgaggc ggtcaatacc acaaagttca gaatgctggc ggcaaaggta atccccatat
    35041 gctggaacgt cagcacaaat gggctgccgt ttgtgccgac ctgattccac ggatagatag
    35101 acataatgac gaacagcgtg ccgacataaa ataccaggat acgcatcggt actgagttaa
    35161 tggcgcgcgg aatggatttc tccgggtctt tcgcttcccc ggcggtgata ccgataatct
    35221 caatcccgcc gtaagcgaac atcaccattt gcagcgacat gatcattccc agccagccat
    35281 tgctgaagaa gccgccgttg ctccacaggt tatgaatgcc agtcggctgc ccgccgttgc
    35341 caattcccca cacaatgatg ccgatacccg cgacaatcat gataataatg gtggcgactt
    35401 tgaagaagga gaaccaaaac tccagctcgc cgaacatctt gacgctcatc aggttgatgg
    35461 cgcaaatgat cagcaccacg ctaagcaccc aaatccagtg cggcacggcg gggaaccaga
    35521 cccccatgta aatgccgaac gcggtcacgt cagcaatggc gacgatcagg atctcaaaac
    35581 agtaggtcca gccggtaatg tagcccgcaa gcgggccgag gttttcctgc gcatagcgcg
    35641 aaaatgagct ggcggcaggg ttgtgaacgg acatttcccc caatgcgcgc ataatgatat
    35701 atgccgcgac cccgccaata atataggcca acagcacgct cggccccgcc attttgatgg
    35761 cgtccgccga gccgtaaaac aggccggtgc cgattgccga acctaatgcc ataaagcgaa
    35821 tgtgccgggt gctcagccca cgctttagct tattattgct ttccatcaat ttctgaccta
    35881 tcaaca
//
LOCUS       DAJVSD010000015        35282 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.015, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000015 DAJVSD010000000
VERSION     DAJVSD010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 35282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35282
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.015"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(28..546)
                     /locus_tag="OQP62_000599"
     CDS             complement(28..546)
                     /locus_tag="OQP62_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000421109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1720232.1"
                     /translation="MELKNVTRYIPDDPDYDNSFLYFRSEDGQDFYESLSKFTKKYKL
                     CIDSENIIRSVSEDVSRLYPAGFSVVEVNKLPAGFNIYGDWKYSNGTVLAVPVDYQAK
                     AETTRQKLLDAANSTIADWRTELALGEIGDDDKDSLTKWMAYIRALKTLDLSGVKDSA
                     TFTEIRWPELPQ"
     gene            complement(561..2072)
                     /locus_tag="OQP62_000600"
     CDS             complement(561..2072)
                     /locus_tag="OQP62_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001681975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1720233.1"
                     /translation="MAKNDFKPFATGKGANVTSQPDWEALPALLSGFTAGKASSAQVN
                     KALRQASFIAAALAQYTASKSGKDVLDDGDLSGFIAKMSAAFGKDFQTLDATLTALAG
                     LATGADKLPYFTGNDTAGQTDLTSVGRDIIGKASIADILTYLGLGETINLAKNAVPAT
                     RRVNSKPLTGDITLWASDVGAISADAVGEITDNGTMASANAPGWWKVAVSNSDTVVDF
                     PTYPGGSKLYSYGYLFVEKIGDVWFQHYYAHIGANAKRQDWGTVPNTSRPWVIDYNTA
                     NKPSASDVGALPITGGRLNGPLSIGTDNALGGNSIVLGDNDTGFKQNGDGILDTFANS
                     QHTVRVAPGEMQVLGAIRAGDAKRMTMTSSNNSVLNAQFHLWGDGNRPTVIELDDDQG
                     WHLYSQRNTDGSIQFVVNGQVIPDNYGNFDARYLTSGNVYTKGESDNRYVQNIQRGAP
                     VWPGKVDEYGPAEAPAGCFLTQARHDPTTAYGVTFAYRPLQMWVGNGWRTING"
     gene            complement(2072..2752)
                     /locus_tag="OQP62_000601"
     CDS             complement(2072..2752)
                     /locus_tag="OQP62_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016239891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2612 domain-containing protein"
                     /protein_id="HCS1720234.1"
                     /translation="MSKYTDLITNYHATKPKFVEHIDLVTRPLAETSAAINGLISAFD
                     IDYATGIQLDILGQWIGLSRVVSQPISGVYFSWDTDGLGYDQGVWQGPYDPDSGYTSL
                     SDETYRIVLKTKIAINNWDGRNDSLPPILDAALDGSGLKMQIVDNQDMTIGIWVFPET
                     DISSVSLELIAAIRQGYLTVKAAGVWGGSIEIPSVETPSEGNRFFGFDMDNEYISGFD
                     AGSWGTLL"
     gene            complement(2749..3948)
                     /locus_tag="OQP62_000602"
     CDS             complement(2749..3948)
                     /locus_tag="OQP62_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001197067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HCS1720235.1"
                     /translation="MALNLDTLGLSATVTAEGISAPDYQTILDTLTSYFQQIYGSDAY
                     LEPDSKDGQMVALVALAIHDANNTAISVYNCFSPATGYGAALTSNVKINGIARKGATN
                     STVDLLLTGTAGTTITNGTVKDTNNVIWRLPDSVVIGVDGTVTATAICSKSGAVAAPA
                     GTITTINTPTRGWTSVTNPAAATVGAPAETDAELRIRQGQSVAIPSITPFEGVDGAIA
                     NIAGVTRHKLYENDTGKTDGNGLPPHSISAIVDGGDVTEIARTIRGNKGQGVRTWGKT
                     SVTVPDKYGNPHIISFSRPTDVPVYGKITLKVFAGYTSQIGVQIQQAVADYINRLMIG
                     DQVLLSRIYSPANLGVVSGGNARYYDIQELLIGKSPETVDAANINIAYDESASCKPEN
                     IIITVAA"
     gene            complement(3949..4302)
                     /locus_tag="OQP62_000603"
     CDS             complement(3949..4302)
                     /locus_tag="OQP62_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720236.1"
                     /translation="MRYRREDTEGDYTFGSGDDTWLINSPEAVAQAVKTRFALWYGQW
                     FLDKTEGTPWIQSVLGKQKPETYNLAIRKRILETRGVKSILSFNTTVNTTTRRVQFFA
                     EIDTIYGTTTVTSEA"
     gene            complement(4543..5298)
                     /locus_tag="OQP62_000604"
     CDS             complement(4543..5298)
                     /locus_tag="OQP62_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001685627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HCS1720237.1"
                     /translation="MPVSLSSQLGSKEQADTRLVGSVMSALRVSMPGIVQSFDPDTVT
                     AVVQPAIKGYEPDSNGVSQSTTLPLLVDVPVVFPRGGGCTLTFPVKAGDECLVIFADR
                     CIDFWWQNGGVQEPVDDRVHDLSDAFCIVGPQSQAQKISGISTSAAQLRTDDGAAFVE
                     VAAGHNVTVKTPGALTATAEGGTTITSPIITLNGDVTINGNLSQGMGEGGGSATMLGP
                     VTVTNDVKAGGKSLMTHTHSGVQTGGGNTGAPN"
     gene            complement(5357..5785)
                     /locus_tag="OQP62_000605"
     CDS             complement(5357..5785)
                     /locus_tag="OQP62_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001144794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720238.1"
                     /translation="MPVMHNCFLELARESLQHNGEQWTRNAISRSYYGMYHSALRITN
                     NLTPTHDTDGERLPGGSHMRLYTAFCNGEAAKVNGVDVDKVRKIGIKLKMLHAQRVNA
                     DYRLERKINRITAISALQDAEEIDALVDRMMNNPDDSLTA"
     gene            complement(5785..6516)
                     /locus_tag="OQP62_000606"
     CDS             complement(5785..6516)
                     /locus_tag="OQP62_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000050472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720239.1"
                     /translation="MSLAQPKSGELLEILGPSLTQGENLLSEFEIHAVIRDARNVPEY
                     YQGLSIEGLAKLVLGEVEEGCALCEKSLAIAPDDSVSFCNYTIALRNKGYHVKQYEII
                     KRAINSRNPRILSEVAINAAYWVDLDLLKKVMPMLNAMEVAKADDLLKCNESLDYLID
                     HENHSHDLKAIGQLMMTIAEKYRLRLAGAHAFYVMNELNTFFVEIKTDDPALLSKVNN
                     DLANELIAAGLENSECVGCFQAGDF"
     gene            complement(6711..7046)
                     /locus_tag="OQP62_000607"
     CDS             complement(6711..7046)
                     /locus_tag="OQP62_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000826019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720240.1"
                     /translation="MKRLLLAALLVCISFTSFADTGCGPFTINWKAQDGLARINGQKP
                     ETQKITFLKQKGDYDNVNIQWMVPGNGRWLGMDFVARNGKPILNVEVIRKNMDEPREF
                     WTYDCRKVK"
     gene            complement(7043..8074)
                     /locus_tag="OQP62_000608"
     CDS             complement(7043..8074)
                     /locus_tag="OQP62_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000042292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720241.1"
                     /translation="MSKNWMRHFELLLVDDKGDGIKISELKVTFNIQKMPATIFNGFV
                     GNFKVYNLSPTTQNRIMQKEFSRIQVIAGYKGQPDATGNYPDENVGMIFNGDIRFTVT
                     GKDNATDSWIMLQCIDSWEGHLNASVKTTVAAGWKYSDLFSLGMKSFGPYGIESGAVP
                     DMPETVFPRGRVVYQSTARLMNHIAGQCNAYWWYENNQVNIVPEDNYIGVATVLNANT
                     GLIGRPQQTMGAGVNVRCLINPNIKLGGLIRLDQASVYRTSLSNDQIAQSPARLDESE
                     SDGNLYVNGLPGMSQPASINTDGDYIVGSIDYTGDTRGQAWYMDLLCLAKDGKELLNS
                     KGIDAAKYT"
     gene            complement(8077..8379)
                     /locus_tag="OQP62_000609"
     CDS             complement(8077..8379)
                     /locus_tag="OQP62_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016247448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720242.1"
                     /translation="MEAVEIPLVADNQTFATTINGTVYHLSVIWRGEYWVLDLADSNG
                     SAIISGMPMITGADLLAQYRYMNLGFSLVVLCDVAGQENPTQFDLGTFSHLYVFTE"
     gene            complement(8383..9033)
                     /locus_tag="OQP62_000610"
     CDS             complement(8383..9033)
                     /locus_tag="OQP62_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000346976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720243.1"
                     /translation="MDFLSVLLQQRTRSIGIIIPDVVITEKHTDALEITEHPVEQPTN
                     AGASGEGAGYISEHAFRRPSEVVMETGFSGGGSLLDFADTSAIGLSLGLSPKELYQEL
                     LNLQRDRIPFDVTTGKRIYNNMLIKTLEVTTDKSSENVLLATLTLREVIITSTQSIRV
                     ASKNNMTEGVGTSAVQNTGTKTTVPPNNSILKSLPQMAQKGVTTVDGYLSNLFLGR"
     gene            complement(9033..10985)
                     /locus_tag="OQP62_000611"
     CDS             complement(9033..10985)
                     /locus_tag="OQP62_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000990879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase catalytic"
                     /protein_id="HCS1720244.1"
                     /translation="MNAETIKDFLVSLGFGIDEAGYEKFESVLAGVTANAIKTGLAVE
                     GAALSVVAFTAKIASGLDNLYWASQRTGATVQGIQSIGYAVSQVGGSVDAARTSLESL
                     SRFVRNNPGAEGFLNRLGVQTRDASGNMRDMAAIFTGVGQELSSMPYYRANQYAQMLG
                     IDENTLMAMRRGLGGFSGQYSAMAKAIGFNADEAAKSSNRFMTSLREFGAMAGLARDK
                     IGSNLAGGLAGSLDTLRRHILDNFPRIEQTLTKAIKGILTLGDIIGRVAFRIVEGVGD
                     IIDWWGKLDKETKTLIEVIGGLVVAMRILNSTFWMSPVGLITGLIVAFGLLWEDYKTW
                     KEGGNSLIDWEKWQPAIDKAKDAMVWLRDHLLELKDSIGGWKTSLELLATFIAGAWIS
                     KVTGAFARLAGIPMPPWLKGWMAYAAYLYDDRENIVASAQSSIDYAKQNIGDGMRALG
                     IDTDFGRNPHTVKGANIQPDIPGAEPVQHAQSAKRTLADRNNNPGNIRPVGGNGFRFF
                     ESALQGWEAMKNQLMRYFTGKTTGRALQTIQDIVSTWAPAGDNNDPKKYAQDVAKWMG
                     VSPNTVLNLANPETMAALMQSMARKEGYSNWNSPLAYQAAGGSLNQQTVINVHGVNNP
                     QEAANLIADKQGAVNARAVQQLKGPA"
     gene            complement(11163..11615)
                     /locus_tag="OQP62_000612"
     CDS             complement(11163..11615)
                     /locus_tag="OQP62_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000389047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720245.1"
                     /translation="MECSVKGHDYRVAKLSVFDQLKVTRKLLPVLAGMMSDFGGIRSL
                     LPADGKIDSAKFDALKPVFETLLPRIAEELSSLTEEDTNAIIHPCLAVVSRKHMGGWA
                     PVFNSGQLMFDDIDLLTMLQLVARVVADSLGNFLQGLPTNGTPTPPAE"
     gene            complement(11619..12059)
                     /locus_tag="OQP62_000613"
     CDS             complement(11619..12059)
                     /locus_tag="OQP62_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3277 family protein"
                     /protein_id="HCS1720246.1"
                     /translation="MATYSFMDVTASISGPTGEIDLGYGSASSEEGITVAMGGPKNTM
                     TIGADGEVMHSLHADKSGTVTVNLLKTSPTNKKLSLAYNAQSQSSGTWGNNVIVIRNK
                     VSGDIITARSVAFQKQPDNANAKAGNTMPWVFDCGKIDQVLGEF"
     gene            complement(12071..13216)
                     /locus_tag="OQP62_000614"
     CDS             complement(12071..13216)
                     /locus_tag="OQP62_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001135544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3383 domain-containing protein"
                     /protein_id="HCS1720247.1"
                     /translation="MPQGLPVSNVVNVDVIIGPRAATGRNFGSLLILGTSTVIPVKER
                     LRLYSSKEDIGSDFGVDSPEYEAATVYFSQSPRPKEVYVGRWAKTLATGEAGAAEKLM
                     DAVNAVMGYTNWYGLGIADKEDIADDDWLKVAAAVEASGVSRILAITTSDPATFDATS
                     TGDLSYKLKAAKYGRTFVQYSSSSKYAALSAFGRAFTVNFNGSNTTITLKFKQEPGIT
                     YETLTTDQAAALDAKNCNVFVYYQNDTAILQQGVMSSGDFFDERHGLDWLQNYVQTNL
                     YNLLYTSTTKVPQTDAGVTRLLSNVEQSMDQSVTNGLVAAGVWNGGPIGQLDSGDALT
                     KGYYVYAQPISEQAQADREARKAPVIQVSCKLAGAVHFADVQINVVR"
     gene            complement(13220..13783)
                     /locus_tag="OQP62_000615"
     CDS             complement(13220..13783)
                     /locus_tag="OQP62_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000503648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720248.1"
                     /translation="MEDFPLSNNSSTEPGWLTPVSGDPDYDEALDRLLSQWVRNVSGL
                     PTGMVRPRWQKDQPPLLPAETNWCAFGVTGWPIDNSPAFTNQTEEGAQLWRHETFECM
                     ASFYGPAGMTFASRFRDGISVAQNNAELNALGLSMGDYTGLTPFPELINQQWVRRYDI
                     TVRLRRKVVREYGIKSLVDAPVSFFGD"
     gene            complement(13758..14147)
                     /locus_tag="OQP62_000616"
     CDS             complement(13758..14147)
                     /locus_tag="OQP62_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001687820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head-tail adaptor"
                     /protein_id="HCS1720249.1"
                     /translation="MPTLDVTDVLFDPDFCDFNLWVTRRVQTVDEDGIGSDSEVKTQF
                     AGVVTVDRSLENRRMQSGQVISGAILIVTTERLTQGQTGRDADIVTYQNRDYRVTFVD
                     PYTAYGAGFVQAHCELLPFDGGFPVEQ"
     gene            complement(14134..14688)
                     /locus_tag="OQP62_000617"
     CDS             complement(14134..14688)
                     /locus_tag="OQP62_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000008741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720250.1"
                     /translation="MSFKSGVTTRVDNAQAILDALKSLTKKDVLVGIPAEDSDRDDVS
                     FGNAGIGYINEYGSPAQNIPPRPHLVPGVKSVEDQTMPQLKAAAQAALDGNAAGAERA
                     LNRAGTVAARGVKNHIKAANFTPLADSTVEARARRGRKGAKAELARRAAGESPGTTLA
                     KPLYDTGKYLASITHVVRDKDADS"
     gene            complement(14685..15092)
                     /locus_tag="OQP62_000618"
     CDS             complement(14685..15092)
                     /locus_tag="OQP62_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4054 domain-containing protein"
                     /protein_id="HCS1720251.1"
                     /translation="MPKNQSLPTVSDFRRDFPQFADPARYPEAQIEFRLNLADELLSE
                     NVTGKKLFPYFAELFVAHYMTLWAADSRAMLVGGPGGSTNGVQSSKSVDKVSVSYDTS
                     ATLNPDAGFWNNTRYGAEFYQLITMFGAGGRQL"
     gene            complement(15058..15426)
                     /locus_tag="OQP62_000619"
     CDS             complement(15058..15426)
                     /locus_tag="OQP62_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720252.1"
                     /translation="MAKEKLVTIHVHTPFTLTLGDQSKQEFGRGRHNVPEEVASHWFT
                     RAHAELSESGSNETDDQQPVIDSLQAQIADKDKLIADLKDALLKLQEQNDSLQAQITS
                     ARTGGNGAKDAKESKPANSK"
     gene            complement(15468..16409)
                     /locus_tag="OQP62_000620"
     CDS             complement(15468..16409)
                     /locus_tag="OQP62_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2184 domain-containing protein"
                     /protein_id="HCS1720253.1"
                     /translation="MITFDQATVDSSGAFLIGELERLDQGLNLPLVGYTWTRDIQLRE
                     DVSIADDISSWTNTSFGVAGSGANPNGKNWVGKDSTAIAGVNVDISKDGNPLNLWGME
                     LGWTVVELAAAQQVGRPIDTQKYDGMQLKWQMDNDEQVYVGDEALGLKGLTNLVGVTL
                     NNATKTWANSTNDEILDSVNSILSNAWAASGYSVVPSDLRIPPEQYSLLASRKVSEAG
                     NQSLLTYLAVNTIAFHQNGVPLEIKAVKWLKGRGVGGKDRMVAYTNDKKYVRYPLVPL
                     QSVPVQYRGLYQIATYYGKLGAVEPVYKETLSYVDGI"
     gene            complement(16421..16918)
                     /locus_tag="OQP62_000621"
     CDS             complement(16421..16918)
                     /locus_tag="OQP62_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720254.1"
                     /translation="MTAYLYRMPVGIAGAISRPQDLTVEPVILKSDNAFAAYGLAGKY
                     DADGFFVPLAEGDTVDKVKGIYVRPYPTTSQPDMVRQVGTDKNFPGDAMKRGYMTVNV
                     GTDASSVKKGGVVYIVVSADASIPVPLGGITAAEVTGKTAALPDAFFTGAGDANGNAE
                     ISWKI"
     gene            complement(16923..18155)
                     /locus_tag="OQP62_000622"
     CDS             complement(16923..18155)
                     /locus_tag="OQP62_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2213 domain-containing protein"
                     /protein_id="HCS1720255.1"
                     /translation="MKYFFNTRLGETRYQLADGSLLCRDVPIGRTGKQLYGAADLPNL
                     KPDKFGEIVVTRSPEQVFHPATLASFEGMSITILHPEDENGNVRLVNPENWKELAVGH
                     LQNVRRGTGEQSDLMLADLIVKDESAIQLIEDGLREVSCGYDAEYEQAEPGKAEQVDI
                     TGNHVALVPKGRAGNRCAIGDRDTMANQKKSWWTRMRTAIKTGDSDTMNELLDSAPAA
                     VTGDEGDLPGGVNLNINLSPQQPLPDKKPEMGGDVTGDGEDDIKTLLKALLAKLEGTA
                     TGDNADTPDDKDKKDPTGDGEDNEEETTITGDSAYRAEVIIPGIDLSRKVKPTAFKRD
                     VLAAADKTLVRQVVGDADIRKLPKQSVDMAFNAVSEIAKGRNTRSTTGDAQRPGMGMT
                     SIASLNKQNADFWSNRKG"
     gene            complement(18170..18907)
                     /locus_tag="OQP62_000623"
     CDS             complement(18170..18907)
                     /locus_tag="OQP62_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HCS1720256.1"
                     /translation="MSTNRQSRQAEIRYRTSLRQIARAVGDIVNGHYDGSNDSVTEIM
                     EALERYSEIITPWATKVAENFTADIVRKNDEQWRKHSKTISRELRNLVSNAPPGQVMK
                     SIVAEQVKYIKSLPLEAADRVYDIQNRAIEAVVTGGRAEHFAKEIAASGDIAKSRADL
                     IARTELGRATGALDQARALSIGSNGYIWRTAEDGDVRHSHREMEGKFVEWGRPPTLDG
                     MTGHAGELPNCRCYKEIVFPNPHSYLA"
     gene            complement(18792..20261)
                     /locus_tag="OQP62_000624"
     CDS             complement(18792..20261)
                     /locus_tag="OQP62_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000113511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1073 domain-containing protein"
                     /protein_id="HCS1720257.1"
                     /translation="MARNKQASRRTVQATADGYENFVTRVGMQTPNQHSASTYRANFT
                     SRNRMLVEWSYRSSWLIGEAVDAIPDDMTRKGIRITSEIDAKDRGTLEAQLDQLQIWD
                     ALNDVLKWSRLYGGAVGFIMIEGQAPMTPLRLETIGEGKFKGILPLDRWMINPVLTRR
                     IKEMGPNLGKPELYDVVTTATGIPAWRIHHSRLIRFDGVTLPFQQKMTENEWGMSVVE
                     RIWDRLTAFDSATVGAAQLVYKAHLRTYKVEKLRELIALGGPAFEALLKNIDLIRQFQ
                     SNEGMTLMDAKDTFETHQYSFSGLDDILSQFAEQISGAVGIPLVRLFGQSPKGFSTGD
                     ADLANYYDRVSSLQERRLRLPVRRVLDIMHRSELGKPLPDDFTFEFNPLWQMSDVDRS
                     TVAVNTTTAIVNALDAGLMTTKAAMTDLRENSDVTGIGASITDEDIENAEDEAPPGIG
                     ELVDKPPEPTGGDPISNEPTADSAGGRGYRKWALRWFKR"
     gene            complement(20261..21664)
                     /locus_tag="OQP62_000625"
     CDS             complement(20261..21664)
                     /locus_tag="OQP62_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000200750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBSX family phage terminase large subunit"
                     /protein_id="HCS1720258.1"
                     /translation="MTSTPISRPTLNPALRNFWTTQARNKVLYGGRSSSKSWDAAGFA
                     IFLANKYSLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRILNNKIINRVTGSEF
                     VFYGLWRNIEEIKSLEGIDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVT
                     DFVWRNFVVDPPEDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESD
                     DDAAIIKLSWIEAAVDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADE
                     WKAKEDELLKSCQRTYQAAMERDADIVYDSIGVGASAGAKFSEINDDRKRENAYARRV
                     NYQRFNAGAGVHEPDDEYNGIPNKDFFANLKAQAWWLVADRFRNTFNAINNGEQYLVD
                     ELISIDSRCPLLEKLKLELTTPHRDFDRNGRVMVESKKDLAKRDIPSPNVADAFIMAF
                     APTDTSLDIWEQLGRQA"
     gene            complement(21630..22382)
                     /locus_tag="OQP62_000626"
     CDS             complement(21630..22382)
                     /locus_tag="OQP62_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720259.1"
                     /translation="MAKPDWEAIETAYRAGIMSLRDIGALYGVTEGAIRKKAKKLEWV
                     RKNITQVRKNGTQKNTVRTTRRPASSGAVQKHSRPESGPPADTKPEAVRKKVVTNHPP
                     FQPGNQYALKHGGYARRLLLKDEVVEDARALTLEDELFRLRANNLMAAENIGRWFTLL
                     EDAEEEQQRKILMDNISAAEKAMMRNTVRIESIVGTLATVSKIHADTDYRLAATDKVS
                     LEADRLRRDAGIDDGNGERDLNDFYADIQTDA"
     gene            complement(22472..22699)
                     /locus_tag="OQP62_000627"
     CDS             complement(22472..22699)
                     /locus_tag="OQP62_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001070544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720260.1"
                     /translation="MNQAIEQIIHSSLNKNEPGAGVGSSVTANDIIEGVRPYYQAASG
                     AEKLSIVERLNKLKVEPGVPIPSNIEQLLSN"
     gene            complement(22796..23173)
                     /locus_tag="OQP62_000628"
     CDS             complement(22796..23173)
                     /locus_tag="OQP62_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000495545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720261.1"
                     /translation="MFTVKTIINGVTHICEQPSISIARAGSETFADTLKLTHNSACPD
                     FAYWLPAIYEDPEMTKALQEEELVISDRTDVLDTDAIAIIIEEYPSENFPGAGDGCRY
                     QFIYPGDQVYVMNSHGSTIETVK"
     gene            complement(23216..23755)
                     /locus_tag="OQP62_000629"
     CDS             complement(23216..23755)
                     /locus_tag="OQP62_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001050879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2514 domain-containing protein"
                     /protein_id="HCS1720262.1"
                     /translation="MNLLSALLKRYWLQLAFILLMAGAFIAGNVWSDRGWQKKWADRD
                     SAESSQEVNAQTAARIIEQGRIIARDEAVKDAQAQAAKSAATAAGLSATVSQLRTEAK
                     KLATRLDAAKHTANLAAAVRSKTAGADATVLADMFGSLAEEAQYYAERSDESYRAGMT
                     CERIYNSVRESTNNPIAPH"
     gene            complement(23752..24366)
                     /locus_tag="OQP62_000630"
     CDS             complement(23752..24366)
                     /locus_tag="OQP62_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 19 protein"
                     /protein_id="HCS1720263.1"
                     /translation="MNQQQFQQAAGISAGLSARWYPYITAAMSEFGITAPLDQAMFIA
                     QAGHESAGFTVLKESFNYSVEALKKTFGKRLTPYQCEMLGRIDGRQVAHQPQIANLVY
                     GGRMGNKDAGDGWKYRGRGLIQITGLENYTRCGVALKLDLVANPGQLELERHAARSAA
                     WFFVTKGCLKYSGDLVRVTQIINGGQNGFGDRRERFEKAKSVLV"
     gene            complement(24366..24647)
                     /locus_tag="OQP62_000631"
     CDS             complement(24366..24647)
                     /locus_tag="OQP62_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004899663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HCS1720264.1"
                     /translation="MVANDPSAVLNAVICGVIVIVLMFYRRGDATHRPLISLLAYVMV
                     LVYASVPFRFVFGLYESSHWLVVMVNILICAAVLWARGNVARLVDALRH"
     gene            complement(24634..25023)
                     /locus_tag="OQP62_000632"
     CDS             complement(24634..25023)
                     /locus_tag="OQP62_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001294874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HCS1720265.1"
                     /translation="MSEPVSSATVLAGGLMGASVFGLATGTDYGVVFGAFAGSVFYVA
                     TATNIGRIRLVAYFITSFIVGVLGAGLIGTKLAAITHYEKPLDALGAVIISAMCIKFL
                     TFLNSQDLNTLFSILSRIRGGGSDGSK"
     gene            25240..25689
                     /locus_tag="OQP62_000633"
     CDS             25240..25689
                     /locus_tag="OQP62_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1720266.1"
                     /translation="MKNTALGKFIFIVGTALLLGGCSGMVMPPYATHGTSVGIIAPAG
                     GYSEWHTDSRNHTTGDSHSQSQGNCTQSEDSQLSENGLTRTHQSNCNTRSQTHSSSTS
                     KTRSSSVGFSVGGPVGASIGLIKQMESMNRAPANDMSSNEMFKNFGF"
     gene            complement(25825..25950)
                     /locus_tag="OQP62_000634"
     CDS             complement(25825..25950)
                     /locus_tag="OQP62_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720267.1"
                     /translation="MKMHNDPHSMDSQSIFAGSQLLPMEKTSHLALSVGFRSHLA"
     gene            complement(26349..27146)
                     /locus_tag="OQP62_000635"
     CDS             complement(26349..27146)
                     /locus_tag="OQP62_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitermination protein"
                     /protein_id="HCS1720268.1"
                     /translation="MNLESLPKYFSPKSMMPGAVPCGITSDTLTITDVMASLGLLTAK
                     AAVGIELYLAKAGVLSSENIIAYIRQLAEQRAERHGALRKMEKGKRSKFLDTMARYVF
                     RDYSLSAASLVTCSSCHGAKLIDAEVFTNKVTYPDGKPPKWVKDTKGISPSDWEVWKS
                     VREQVRVVCKACDGKGQVKNECRCRGRGEILDKKKSELQGVPVYKKCPRCKGRGYPRL
                     KDTEIFKALGVTEMVWRYNYKLFFDRLVEHCHIEESYAEKVLGNVTR"
     gene            complement(27136..27282)
                     /locus_tag="OQP62_000636"
     CDS             complement(27136..27282)
                     /locus_tag="OQP62_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001617856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlcG family protein"
                     /protein_id="HCS1720269.1"
                     /translation="MKPELIEILRMRWLRLRIYRYRGSFPVAYRILRNYVRIEAKREH
                     RNES"
     gene            complement(27279..27890)
                     /locus_tag="OQP62_000637"
     CDS             complement(27279..27890)
                     /locus_tag="OQP62_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein NinG"
                     /protein_id="HCS1720270.1"
                     /translation="MAKLPRRKCANKECRQWFHPIREGQIVCSYQCASTVGKEQTRKA
                     REAAQRKAQSLQRAAEKKERAAWRQRKAAVKPLKHWIDLTQRAVNDICRETELAEGLG
                     CISCGTKTAFAWHAGHYRSTAAAGHLRFTRFNIHLQCDVCNVYKSGNIEAYRAALVER
                     YGEAAVLALENNNTPHRWTVEELKEIRLAALSDLRALKKLEAA"
     gene            complement(28099..28701)
                     /locus_tag="OQP62_000638"
     CDS             complement(28099..28701)
                     /locus_tag="OQP62_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HCS1720271.1"
                     /translation="MAHELQLIKQSSGILIPATPETSDILQSKIKLGAVLVAEFRQVR
                     NPAFHRRFFALLNLGFEYWEPTGGAISANERKLVNGYAKFLAAYGGNESALLDAAEQY
                     LEQIANRRVTNGISLCKSFDAYRAWVTVEAGHYDAIQLPDGTLRKHPRSIAFSSMDEV
                     EFQQLYKSALDVLWRWILSRTFRTQREAENAAAQLMSFAG"
     gene            complement(29036..29275)
                     /locus_tag="OQP62_000639"
     CDS             complement(29036..29275)
                     /locus_tag="OQP62_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001217670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI family protein"
                     /protein_id="HCS1720272.1"
                     /translation="MRIELVISRTKQLPEGAVPALEKELITRLQNQYENCNLTIRRGS
                     QDGLSIVGAADGDKKRIQSILQETWESADDWFYAY"
     gene            complement(29460..29957)
                     /locus_tag="OQP62_000640"
     CDS             complement(29460..29957)
                     /locus_tag="OQP62_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000963896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
                     /protein_id="HCS1720273.1"
                     /translation="MAIEYVEGVNYLSIEDIVYINRSLIEIQTPNEPIGVLNPNNLSS
                     SQSRPSTIRYYEQTDDMFRLSAVLIESLIQNHPFANANKRTAMMAGYVFLLLNGYELT
                     APSDEVVTIAEGLARKDYAVDDLENWLCHWSREYDSRTLCETGGNMIQALVATSRYIR
                     IKSNE"
     gene            complement(29968..30147)
                     /locus_tag="OQP62_000641"
     CDS             complement(29968..30147)
                     /locus_tag="OQP62_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016156674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720274.1"
                     /translation="MGHALKKADRLYIPPRDKSMVAKPRAAISKACSHTGQVKNAFEF
                     GFARYEKAMEELSKV"
     gene            complement(30993..31565)
                     /locus_tag="OQP62_000642"
     CDS             complement(30993..31565)
                     /locus_tag="OQP62_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001751779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF550 domain-containing protein"
                     /protein_id="HCS1720275.1"
                     /translation="MTTITKEWLQQTIAEFENTRDDIPFGLSDDDAKILIVLKRALAS
                     LEREQVRHEHADWSDATFGDVGPIGPLKHLSKEALETAAELGDLSEWADMQFLLWDAQ
                     RRAGITDEQIALAMVEKLAVNKKREWPEPKDGEPRLHIKEQPVPVVPEECPEEIRDLM
                     ASHSDALFNDDDAQEIWNACRAAMLNGGKS"
     gene            complement(31569..32042)
                     /locus_tag="OQP62_000643"
     CDS             complement(31569..32042)
                     /locus_tag="OQP62_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000840609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HCS1720276.1"
                     /translation="MESQSILDMCCGSRMFWFNKRDERAVFADIRAEEHILCDGRRLV
                     ISPDLIADFRALPFADASFPVVVFDPPHLERVGQTAWMGKKYGRLNKKTWRSDLRAGF
                     KEAFRVLRAHGVLIFKWNETQIPVSQILALTDVKPIIGQRTGKNDKTHWIIFVKD"
     gene            complement(32042..32566)
                     /locus_tag="OQP62_000644"
     CDS             complement(32042..32566)
                     /locus_tag="OQP62_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000065106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ead/Ea22-like family protein"
                     /protein_id="HCS1720277.1"
                     /translation="MSNIDKRALREVAERATPGNWRRTSSLFNGITVTPFSLCGEEVT
                     LAHTVEKRDAEFIAAANPATMLALLDELETKEEQRANWFRMAQKLGEDLDTAERLIAE
                     LDQRLIEYAGIATREARRVAELEARKVNLSKLSVGEVMHMTGFSRDYAEGWCAGNDNA
                     IHEIRTAGIKVKES"
     gene            complement(32563..32910)
                     /locus_tag="OQP62_000645"
     CDS             complement(32563..32910)
                     /locus_tag="OQP62_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF977 family protein"
                     /protein_id="HCS1720278.1"
                     /translation="MARPKTHSERMIILERIIGLVKEQGRITTNDVVAIFGVHRTTAE
                     KYLRIALERGGFIRHGRCGIFRDQRAVIDYDLRRYSSSQVTGFSALPVLEKSPVMQVY
                     GASKMSINKGGAQ"
     gene            complement(32921..33670)
                     /locus_tag="OQP62_000646"
     CDS             complement(32921..33670)
                     /locus_tag="OQP62_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HCS1720279.1"
                     /translation="MKNVIGTGSALDRLKRIIPASVQPKFSTADEWRAWQEAEGRKRS
                     EELDRMNQKSRTEKIFGRSGIQDLHRSCTFANYEVSGEGQRKAYTMAKSYAQNFGSGF
                     ASFVFSGGPGTGKNHLAAAIGNHLLAGGHSVLVVTIPDLMLRVRECYDGGQSEASLLD
                     DLCKVDLLVLDEVGIQRGSSGEKVILNQVIDRRLSSMRPVGVLTNLNHEGLLDSLGAR
                     VIDRLQMDGGMWVNFDWESYRKNVSHLRIVK"
     gene            complement(33673..34656)
                     /locus_tag="OQP62_000647"
     CDS             complement(33673..34656)
                     /locus_tag="OQP62_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HCS1720280.1"
                     /translation="MSMSNTAEIYKFPAPIPTQQECRMADLENGYLRLANQIQDALCI
                     VELSGREFRVLNAIIRLTYGWSKKSDRIANSLIADKTTLKVKHVSEAVLSLAYRNIII
                     LRRIGQTRYIGINTNLDKWAYSKPHCSKCPVSFPDDEIATWIISVPETRDSYTRKGGR
                     ASPKTGIVIPENRDSVLPHSAIPENGDSYPRKEGRASPKTGNTKDIIPKTNIKDLTPF
                     NPPKGKVKFDPLSIPVPEWLNAASWNEWVTYRQQSGKPIKTELTVTKAFRLLKECLDE
                     GHDPVNVINTSIANGYQGLFKPKFALNDRRAGRDVNHISAPDKTIPTGFRG"
     gene            complement(34741..35115)
                     /locus_tag="OQP62_000648"
     CDS             complement(34741..35115)
                     /locus_tag="OQP62_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720281.1"
                     /translation="MAYQAKRHQPNNHRGYLPMENAIARKLDPPEINPIEIESVLLNR
                     LASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTA
                     VEILADAGLKAERARPDALGWD"
     gene            complement(35081..35266)
                     /locus_tag="OQP62_000649"
     CDS             complement(35081..35266)
                     /locus_tag="OQP62_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001342255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1720282.1"
                     /translation="MGRRLGRRAQTVNGWFKNKVPGELVVRVARAIDWKVTPHELRPD
                     LYPNPTDGLPSQEASAK"
BASE COUNT         8218 a         9660 c         8397 g         9007 t
ORIGIN      
        1 taaaaactag caagtcagta gtagtcgtta ttgtggtaat tcaggccacc tgatttccgt
       61 gaaggtggct gagtctttca cgccgctcaa atccagcgtt ttaagcgccc tgatatacgc
      121 catccattta gtcaggctgt ccttatcgtc gtcaccgatt tcacccaacg ccagttcggt
      181 tcgccagtcg gcaatggtgc tgttagcggc atccagtagt ttctgtcggg tggtttcggc
      241 cttagcctga tagtcaacgg gaacagccag aacagtgccg ttcgaatatt tccagtcgcc
      301 atagatatta aatccggctg gtagtttatt gacctcaaca actgaaaagc cagccggata
      361 gagtcgcgac acatcttctg atacggaacg gattatattt tcagaatcaa tgcacaactt
      421 atattttttc gtgaatttac tcagcgactc ataaaaatcc tgaccatctt cactacgaaa
      481 atacagaaag ctgttatcat aatccgggtc atcaggaatg tatctggtta cgttttttaa
      541 ttccattata ttcacctaaa ttatccatta attgtacgcc agccattacc cacccacatt
      601 tgtagcggtc tatacgcaaa tgtcacaccg tatgctgttg ttgggtcatg tctggcctgt
      661 gttaaaaagc aaccagcagg cgcttctgct ggtccatatt catctacttt gccaggccat
      721 acaggagcac cgcgctggat attttggaca taacgattat ctgattcgcc ttttgtatat
      781 acgtttcctg atgttaaata acgggcgtcg aaattaccgt aattatccgg aataacttgt
      841 ccattaacaa caaactgaat actgccatcg gtattacgct ggctgtataa atgccatccc
      901 tggtcgtcat ccagctcaat aaccgttggt cgatttccgt caccccacaa atgaaattga
      961 gcattcagca cggagttatt tgagctagtc atggtcattc gtttggcatc gcctgcgcga
     1021 atggctccca gaacctgcat ttcaccggga gcgacacgaa cggtgtgctg gctattcgca
     1081 aacgtatcca gtatcccatc gccgttctgt ttaaaaccag tgtcattatc accaagaacg
     1141 atcgaattgc cgcccagcgc attatcagta ccaatgctta gcggaccgtt aagacgccct
     1201 ccggtaatcg gcaatgcacc cacatcactg gctgacggtt tatttgcggt gttgtagtca
     1261 ataacccacg ggcgactggt attcggtaca gttccccagt cctggcgctt tgcgttcgcg
     1321 ccaatatggg cataataatg ctgaaaccag acgtctccga ttttctcaac aaacagatat
     1381 ccatagctgt acaacttgct gccacccgga taggtgggaa aatcaacgac cgtatcagaa
     1441 ttcgacaccg ccaccttcca ccatccgggt gcattagctg atgccattgt gccgttatcg
     1501 gtaatttctc caacagcatc ggcggaaatg gcccccacat ctgacgccca caaagtgata
     1561 tcaccggtca gtggtttact gttaacccgc cgtgtcgccg ggacggcatt ttttgccaga
     1621 tttatcgttt cgcctaaacc gaggtatgtg agaatatccg caatactggc ttttccgatg
     1681 atgtcgcgcc caacagaagt aagatctgtc tgtccggctg tatcattccc cgtgaaatac
     1741 ggaagtttat ctgcaccagt agccagacca gcgagcgccg tcagcgtggc atcaagagtc
     1801 tgaaaatcct taccgaacgc agcggacatt ttggcgataa agccgctcag gtcaccatca
     1861 tcgagtacat cctttccgct cttactggct gtgtactgtg ccagtgctgc agcgatgaag
     1921 ctcgcctgac gcagcgcttt atttacctgt gcacttgatg ccttgcccgc agtaaaacca
     1981 gacaggagcg ccggcagcgc ttcccagtca ggctgtgatg taacattagc acccttaccc
     2041 gtcgcaaacg gtttaaaatc atttttagcc atcagagtaa tgtcccccat gaaccggcat
     2101 caaacccgct gatatattcg ttatccatat caaacccaaa aaacctgttt ccttcagaag
     2161 gcgtttccac cgaaggtatt tcaatacttc cgccccatac accagcggcc tttaccgtca
     2221 gatacccttg tcgtatcgca gcaataagtt cgagagagac cgatgaaata tctgtttcag
     2281 gaaaaaccca gatacctatg gtcatatcct ggttatcgac gatctgcatc ttcagaccgg
     2341 acccgtccag tgcggcgtca agaatgggag gcagggagtc gtttcttccg tcccagttgt
     2401 taattgctat cttcgttttt agaacgatgc gataggtttc atcgctcagc gaggtataac
     2461 ccgaatccgg atcatatggc ccctgccaga cgccctggtc atatccaagt ccgtcagtgt
     2521 cccaactgaa atagacaccg cttattggct ggcttacaac acggcttaac cctatccact
     2581 ggccgagaat atcgagttgt attcctgtcg cataatcaat atcaaaagcg cttattagcc
     2641 catttattgc ggctgaggtt tcagctaacg gcctggtcac taaatcgatg tgttcaacga
     2701 atttaggttt tgtcgcatga tagttagtaa ttaagtccgt atatttgctc atgctgccac
     2761 cgtaataatg atattttccg gcttacagga ggcagattcg tcgtaagcaa tattaatatt
     2821 cgccgcatca acggtttcag gagatttgcc gatcagcaac tcctgaatat cgtaatagcg
     2881 cgcattacca ccactgacga ccccaaggtt agcaggagaa taaatccggc tcagcagtac
     2941 ctggtcacca atcatcagtc tgttaatgta atccgcaaca gcctgctgaa tctgcacacc
     3001 tatctgagag gtgtacccgg caaaaacttt taaggtgatt tttccgtaaa cagggacatc
     3061 agttggtcgc gaaaaactga ttatgtgagg attaccatat ttatccggta cggttacgga
     3121 tgtttttccc caggtccgga ccccctgccc tttatttccc cggatggtcc tcgctatttc
     3181 ggttacatcg ccaccatcaa caatggccga gatggaatgc ggaggaagcc cgttaccgtc
     3241 agtctttcct gtatcatttt catagagctt gtggcgcgtc acaccagcaa tattagcgat
     3301 cgccccgtcc acgccttcaa atggtgtgat ggatggtatc gcgacactct gcccctgcct
     3361 gatgcgcagt tctgcgtccg tttctgcagg tgcgccaacg gtggccgctg ccgggttggt
     3421 tactgacgtc cagccacggg tcggtgtatt gatagtggta atcgtcccgg caggagctgc
     3481 aaccgctccg cttttggaac aaattgcagt tgccgtcacg gtgccatcaa caccaatcac
     3541 cactgaatcc ggaagacgcc agatcacgtt attggtgtct ttcacggtgc cgttcgtaat
     3601 ggttgttcct gcggtgccag tgagcagtaa atccacggta gagttcgttg cacctttgcg
     3661 cgcgataccg ttaattttta cgttactggt cagcgctgcg ccgtaacctg tagcaggtga
     3721 gaagcagtta tagacggaaa tggctgtgtt attggcatcg tgaatagcta gcgccaccag
     3781 cgccaccatc tggccgtctt tgctgtccgg ctccagataa gcgtcactac cataaatctg
     3841 ctggaaatag ctcgtcaggg tatcgagtat cgtctggtaa tcaggcgcac tgatcccctc
     3901 agcggttacc gttgccgata agccgagtgt gtccaaattg agggccattt atgcctcgct
     3961 ggttactgtc gttgttccgt agatagtgtc gatttcagcg aaaaactgga cgcggcgcgt
     4021 cgtcgtgttc actgtggtat tgaaagagag gatggatttc acgccccgcg tttcgaggat
     4081 gcgcttgcgg atcgccagat tgtaggtttc cggcttttgc ttaccgagca cagactgaat
     4141 ccacggtgtt ccctctgtct tatcgaggaa ccactgcccg taccacaatg caaatcgtgt
     4201 ttttaccgcc tgcgcgacag cttctggcga gttaatcagc caggtatcat cgccactacc
     4261 aaaagtgtaa tcaccttcgg tatcttcgcg tcggtatcgc atgtctgacc tccttattca
     4321 ccaccatcgg acggcaccaa tcaggctcga aagcccgaaa aggaaaaata caatccatat
     4381 aagcaggaat ttccagttgg gtaatttttc gcccataact cgcaactcca ttatcagttt
     4441 gctaaaatca atcacatgtt ctcccttgcc atcctcaagg tgtagaaagt aaaaagcccc
     4501 gaagtgttag cgcacccggg gcttttgtct ggttggtagt ttttaattcg gcgcgccagt
     4561 attcccgcca cccgtctgaa cgccgctatg agtgtgcgtc atcaggctct taccgcccgc
     4621 cttcacatcg tttgtcaccg tgacaggacc gagcatcgtt gcgctaccgc cgccctcacc
     4681 catcccctgc gacagattgc cgttaatggt tacgtcaccg tttagcgtaa tgatgggtga
     4741 tgtgatcgtg gttccgcctt ctgcagtagc cgtcagcgcg ccgggggttt taacagtaac
     4801 gttatggcct gcggccactt ccacaaaagc agccccatca tcggtacgca attgtgcggc
     4861 gctggtgctg attccgctta ttttctgcgc ctgcgactgc ggcccgacga tacagaacgc
     4921 atccgataaa tcatgcaccc gatcgtcgac aggctcctgt accccgccgt tctgccacca
     4981 gaaatcgatg cagcgatcgg caaaaatcac cagacactca tcaccagctt taaccgggaa
     5041 cgttagcgtg cagccaccgc cgcgaggaaa taccaccggc acatccacca gcagcggtaa
     5101 tgtcgtcgac tggctaacgc cattcgaatc cggctcatag cctttgatag cgggttgaac
     5161 aactgcggtt acggtgtcgg gatcaaatga ctggacgatg ccaggcattg aaactcgcag
     5221 tgcagacatg acagaaccaa caagccttgt atcagcctgt tctttactgc cgagttgaga
     5281 ggaaagtgaa actggcatat tttctccaga cataaaaaaa cccgctcatc ggcgggcttg
     5341 gtatggtagt catagcttat gctgttaacg agtcgtcggg gttattcatc attcggtcca
     5401 ctagagcatc tatctcttca gcatcttgta aggcactaat tgccgtaatt cgattaattt
     5461 tgcgttcaag tctgtaatca gcatttacgc gctgagcatg taacatcttt aacttaatgc
     5521 caattttacg gactttatca acatctacgc cgttaacttt agcagcctca ccgttacaaa
     5581 aagctgtata gagtcgcatg tgagaaccgc caggtaatct ctcaccatca gtatcatggg
     5641 taggcgtcag attgttagtg attctgaggg ctgaatgata catgccgtag tatgacctgc
     5701 tgatagcatt acgtgtccat tgctcaccat tgtgctgcaa tgattctctg gctaattcga
     5761 gaaaacaatt atgcataaca ggcattagaa gtctcctgcc tggaaacaac caacacactc
     5821 tgaattttcc aaaccagcag cgatgagttc attggcaagg tcgttattca cttttgacaa
     5881 aagtgctggg tcgtcagttt taatttctac gaaaaatgtg ttcagctcat tcatgacata
     5941 aaaagcatgc gcaccagcca gacgtaaacg atacttttca gcaatagtca tcatcaattg
     6001 gccgatcgcc ttaaggtcat gagaatgatt ctcatgatcg ataagataat caagcgactc
     6061 attacacttg agcaaatcgt ctgccttagc aacttccatc gcattaagca taggcattac
     6121 ctttttcagc aaatctaaat ccacccaata cgcagcattt atagccactt cagaaagaat
     6181 tcgaggatta cgcgagttga tcgctctctt aataatctcg tattgcttaa cgtgataccc
     6241 cttgtttctc aacgcaatcg tatagttaca aaacgaaaca gaatcgtccg gggctatcgc
     6301 caatgacttt tcacaaaggg cacatccctc ttcaacttcg cctaaaacaa gcttagctaa
     6361 tccctcgata gaaagccctt gataatattc aggaacattc ctggcgtcac gaatgacggc
     6421 atgaatttca aactcactga gtaggttttc tccctgagtg agtgagggac caaggatctc
     6481 taaaagctct ccggatttag gctgcgctaa actcatttag ttgtaattcc tgactgggtg
     6541 acatcaaagt tgatggcaaa acgccttcaa aagtatctgc agtgtaatgg gtaaagttgg
     6601 aaaacgacag cacgatgcgc acattttgct gattttcaga aagtttggtt agctagaaat
     6661 gtcaatcgat ttagtttcac cgaggcacct tcttacaagg aaaagcgcgt tcacttcacc
     6721 ttccggcagt catacgtcca gaactctcgc ggctcgtcca tatttttgcg gataacttca
     6781 acattgagga tcggcttgcc atttctggcc acaaagtcca tccctaacca acgtccatta
     6841 cccggaacca tccattggat gttcacattg tcataatccc ctttttgttt gagaaaggtg
     6901 attttctgtg tctccggttt ctgtccatta atccttgcaa gtccgtcttg cgctttccag
     6961 ttgatcgtga atggtccgca cccggtatca gcaaaggaag tgaaggagat acagacaagt
     7021 aaagctgcca acaatagtct tttcatgtgt atttcgccgc atcaatccct ttcgagttaa
     7081 gcaattcttt gccatcttta gccaggcaaa gcaggtccat ataccacgcc tgcccgcgag
     7141 tgtcgccagt ataatcgatg ctgcccacaa tgtaatcacc gtcagtatta atgctggcag
     7201 gctgtgacat gccgggcagg ccgttaacgt agagattacc gtcgctttcc gattcatcca
     7261 gccgtgctgg agattgcgct atctggtcat tactcaaaga ggtccggtag acagatgcct
     7321 gatccagacg aataagccca cccagcttaa tgtttggatt aatcaggcac ctgacgttta
     7381 cgcctgcacc cattgtttgc tgaggcctac cgattagccc tgtattggca ttcagcaccg
     7441 tagcgacacc gatatagtta tcttccggca caatgttgac ctgattgttc tcataccacc
     7501 agtaagcgtt acactgtccg gcgatatgat tcatcagcct ggctgtgctc tgatagacaa
     7561 cccgcccacg ggggaagacc gtctcaggca tgtcaggaac tgcacctgac tcgataccat
     7621 aaggcccgaa tgatttcatg cccaggctga aaagatcact gtacttccag ccggcagcca
     7681 ctgtggtttt cacactggcg ttcaggtggc cttcccaact gtcgatacac tgcaacatga
     7741 tccaactgtc tgtcgcatta tctttcccgg tgacagtaaa acggatatct ccgttgaata
     7801 tcataccaac gttttcatcg ggataattac ccgttgcatc cggttgtccc ttatatccgg
     7861 ctataacctg tatacgcgag aattccttct gcataatccg gttctgagtg gtaggggaca
     7921 ggttataaac cttaaaattt ccaacgaatc cattaaatat ggtcgcaggc attttctgaa
     7981 tattgaaagt gactttaagc tcagaaattt ttatcccgtc gcccttatcg tcaaccagca
     8041 ataattcaaa gtgacgcatc cagttttttg acattgttac tccgtgaaga catagaggtg
     8101 tgagaacgtt ccgagatcga attgcgtcgg gttttcctgt cctgccacgt cgcagagtac
     8161 caccagcgaa aacccgagat tcatatatcg atactgcgcc agcaggtcag cccccgtaat
     8221 catcggcata cctgagataa tggcggaacc attgctgtca gcaagatcca gaacccagta
     8281 ctctccgcgc cagatgacag acaggtgata aaccgtaccg ttaattgtgg tggcaaaagt
     8341 ctgattatca gcgaccagtg ggatttctac ggcctccatg aatcaccttc ccagaaataa
     8401 attgctcaga tacccatcga cagtggtgac acctttttgc gccatctgtg gcagcgattt
     8461 cagaatggaa ttattcggcg gtaccgttgt tttggtacct gtattctgta cagcagacgt
     8521 ccctactccc tcggtcatat tgtttttcga ggcaaccctg attgactgcg tggaggtaat
     8581 aatcacctcc ctgagggtaa gggtcgccag aagcacattc tcactgctct tgtcagtcgt
     8641 cacctccagc gtttttatca acatattgtt gtaaatacgc ttgccggttg tcacatcgaa
     8701 aggaatacga tcccgctgca ggttaagcag ctcctgatac agttctttcg ggctcagccc
     8761 cagtgaaaga ccaatagcgg aagtatcagc aaaatcaagc agcgatccgc ctccggaaaa
     8821 tccggtttcc atcacaactt ctgaagggcg cctgaatgcg tgttctgata tgtaaccagc
     8881 gccctcacca ctggcaccag cattcgtggg ttgttcaacc ggatgttccg taatttccag
     8941 agcgtcagta tgcttttcgg taataaccac atcaggaata attattccta tcgagcgggt
     9001 tcgctgctgc agcaaaacag ataaaaaatc cattacgcag gtcctttcaa ttgctgtacc
     9061 gccctggcat tgacagcacc ctgcttgtca gcgatcagat tagccgcttc ctgaggattg
     9121 ttcacgccgt ggacatttat aacagtctgc tggttaaggc taccaccagc ggcctgatac
     9181 gccagcgggc tgttccagtt tgaataccct tctttgcgcg ccatcgactg catcagcgcg
     9241 gccatagttt ccgggttggc gaggttcaac acagtgttcg gtgaaacgcc catccatttt
     9301 gcaacatcct gcgcatactt tttcgggtcg ttgttgtcac cagccggcgc ccaggtactg
     9361 acaatatcct gaatggtctg taatgcccgc ccggttgttt tccctgtaaa gtagcgcata
     9421 agctggtttt tcatcgcctc ccagccctga agggcggact cgaagaaccg gaagccgtta
     9481 ccgcccaccg ggcgaatgtt acccggattg ttgttcctgt cggctaaagt gcgctttgcg
     9541 gattgtgcat gttgtacagg ttctgctcca ggaatatccg gctgaatatt agcgcctttg
     9601 acggtgtggg gattgcggcc aaaatcggta tcaatcccca gtgcacgcat tccatcgcca
     9661 atgttttgtt tggcataatc gatagacgac tgcgcactgg cgacgatatt ctcccgatcg
     9721 tcatacaggt aagccgcgta ggccatccag ccttttaacc acggcggcat cggtatacct
     9781 gccagtctgg caaatgcgcc cgttaccttg ctaatccacg caccggcgat aaaggtcgcc
     9841 agcagctcca gtgacgtttt ccagccgcca atagagtcct taagttcgag caggtgatca
     9901 cggagccaga ccatcgcatc cttcgctttg tctatcgctg gctgccattt ttcccagtca
     9961 ataagactgt taccgccttc tttccatgtt ttgtagtctt cccacaagag accgaacgcc
    10021 acgatcagac cagtaatcag ccctacaggc gacatccaga aagtagagtt aagtatccgc
    10081 atggcgacaa ccagaccacc gataacctct atcagggttt tcgtttcttt atccagtttt
    10141 ccccaccagt cgataatatc ccctacacct tcaacaattc gaaacgccac gcgaccgatg
    10201 atatccccga gcgtcagaat accttttatg gctttcgtca gggtctgctc gatgcgcggg
    10261 aagttatcca ggatgtggcg gcgcagcgtg tccagcgaac ccgccagacc accagcaaga
    10321 ttagagccga tcttgtcacg ggccaagcct gccatcgcgc cgaactcgcg cagggaggtc
    10381 atgaacctgt tggagctttt ggccgcctcg tcagcattga aaccgatggc ctttgccatc
    10441 gcgctgtact ggccggagaa tccccctaaa ccccggcgca tcgccataag ggtattttca
    10501 tcaatgccca gcatctgcgc atactggtta gcccggtaat acggcatgct gctgagctcc
    10561 tggccgacgc ccgtaaaaat ggcggccata tcgcgcatat tcccgctggc gtcccgggtc
    10621 tgtacgccca ggcggttcag aaagccttcc gcgccgggat tattacgcac aaaccgggag
    10681 aggctttcca gcgaagtccg cgccgcgtcc acactaccgc ccacctgcga aactgcgtag
    10741 ccaatcgact gaatcccctg aaccgtcgcg ccggtgcgtt gagatgccca gtagagatta
    10801 tccagaccgg aggcaatttt cgccgtaaac gcaacaacgg acagcgccgc accttccacc
    10861 gccagccctg tttttatggc atttgcggtg acgccagcaa gaacagattc aaatttctcg
    10921 tatccggctt catcaatgcc aaatccaagg gagacgagaa aatctttaat agtctcagcg
    10981 ttcattaacc tctctccatt tatctacccg agcatcgtta tcctcgcgca tgtcgaggta
    11041 gtcattgaga agcgcgatgc ggcagagatc taccgcgccg ctgttaaggt ctttctggtc
    11101 aatatggaag gcgagaaccg ggcgaagaat aaaatcttca ccgcccggca ggctgttgaa
    11161 ggttattccg ctggcggggt gggcgtcccg ttggtaggga gtccttgcaa aaaatttccc
    11221 agagaatcgg cgaccacccg cgccaccagc tgcagcatgg tcagcaggtc gatatcgtca
    11281 aacatcaact gaccgctgtt aaacaccggg gcccatcccc ccatatgttt gcgtgatacc
    11341 acagccaggc aaggatgaat aatcgcgttg gtatcttctt cggtcaggga agacagttcc
    11401 tcagcgatac gcggcagcag ggtttcaaac accggcttaa gcgcatcaaa cttagcgctg
    11461 tcgattttgc catccgcagg cagaagggag cgaatgcccc cgaaatctga catcatgccc
    11521 gccagcaccg gcagcaattt acgggtgact ttcagctggt caaaaacgct gagtttcgcc
    11581 acgcgataat cgtggccttt gactgaacat tccatctgtt aaaactctcc gagtacctgg
    11641 tcgattttgc cgcagtcaaa tacccagggc atcgtattac cggctttcgc gttggcgtta
    11701 tccggctgtt tctggaaggc cacactgcgc gccgtgatga tgtctccgct caccttattt
    11761 cggatcacaa tgacgttgtt tccccaggtt cctgaggact gactctgtgc gttatacgcc
    11821 agcgacagtt ttttgtttgt cggcgaggtc ttcagcagat tgacagttac cgtaccgctt
    11881 ttatccgcgt gcaggctgtg catcacttcg ccgtcagcac cgatggtcat ggtgtttttg
    11941 gggccgccca ttgcaacggt gatcccctcc tctgaactgg cggaaccgta gcccaggtca
    12001 atctcgccag tcgggccaga aatggacgcg gtgacatcca taaaagaata agtagccatt
    12061 cattttcccc ttagcgaacg acgttgatct gtacgtcagc gaaatgcact gcgccagcca
    12121 gcttacagga aacctgaata accggtgcct tacgtgcttc acggtctgcc tgcgcctgct
    12181 cggaaatcgg ctgcgcgtag acgtaatacc cttttgtcag cgcgtctccg gaatccagct
    12241 gcccgattgg gccaccgttc catacgccag cagccaccag cccgttcgtc acggactgat
    12301 ccatagactg ctcaacattg gacagaagac gtgtaacacc cgcatcggtc tgaggcactt
    12361 tggttgtact ggtgtacagc aggttataca ggttggtctg aacgtagttc tgcagccagt
    12421 cgagcccgtg gcgctcatca aagaaatcac cgctggacat gacgccctgc tgcaggattg
    12481 ccgtatcgtt ctggtagtac acaaacacgt tgcagttctt ggcatccagc gccgccgcct
    12541 gatcagtcgt cagggtttcg taagtgatcc ccggctcctg tttaaatttc agggtaatgg
    12601 tggtattgct gccgttgaaa ttcaccgtaa acgcgcggcc aaacgcggac agcgcagcgt
    12661 acttgctgct ggaagaatac tgtacgaacg tgcgcccgta ttttgccgcc ttcagcttgt
    12721 aggacagatc cccggttgaa gtggcgtcaa aggtggcggg atcgctggtg gtaattgcca
    12781 gaatgcggct gacgcccgaa gcttctacgg ctgcagcaac cttcagccag tcgtcatctg
    12841 caatatcctc tttgtctgca ataccgagac cataccagtt ggtgtagccc attacggcgt
    12901 taaccgcatc catcagcttt tcagcagcac ccgcctcacc cgttgccagt gttttagccc
    12961 agcgacctac atacacctct ttaggtcgtg gtgactggga gaaatagact gttgctgctt
    13021 catattcggg gctgtccacg ccgaaatcag atccgatgtc ctcctttgag gagtagaggc
    13081 gaagacgctc tttcaccgga atgaccgtgg atgtcccgag aataagcagt gaaccaaaat
    13141 ttcgaccagt agccgcgcgc ggcccaatga tcacgtcgac attaacgacg tttgatacag
    13201 gtaatccctg cggcataatt taatctccga agaatgaaac tggtgcatcc accagcgatt
    13261 taatgccgta ctcgcgcacc accttgcgac gaaggcgcac agtaatgtcg taacggcgaa
    13321 cccactgctg gttgataagt tccgggaaag gggtcagacc ggtgtagtcc cccatggaca
    13381 ggccaagcgc gttcagttcg gcgttgtttt gcgcaacaga aataccatcg cgaaaacgtg
    13441 acgcaaacgt catgcccgcc gggccataaa atgacgccat gcactcaaag gtttcatgtc
    13501 gccagagctg agcgccctct tcagtctggt tagtgaatgc gggactgtta tctatgggcc
    13561 atccggtaac gccgaacgcg caccagttcg tttcagctgg cagcagtggc ggctgatctt
    13621 tctgccatcg ggggcgaacc attccagtcg gcaaaccgga aacgttgcgt acccactggc
    13681 ttaacagcct gtcgagcgcc tcgtcataat ccggatcgcc gctgacaggt gtaagccatc
    13741 ccggctccgt actggaatta ttgctcaacg ggaaatcctc catcgaacgg cagcagctcg
    13801 caatgcgcct gtacaaagcc ggcgccatat gcggtgtacg ggtcgacgaa tgtcacacga
    13861 taatcacggt tctgatacgt cacgatatcg gcatcacggc cagtctgccc ctgcgtgagt
    13921 cgctcagtcg tcacgataag gattgctcca ctgataacct gcccggactg catgcggcgg
    13981 ttttccagtg aacggtcaac ggtaacaacc ccggcaaact gcgttttaac ttcgctgtcg
    14041 ctaccaatcc cgtcttcgtc cactgtctgt acccgacgcg ttacccaaag gttgaagtca
    14101 caaaaatccg ggtcgaaaag aacatcggtt acatcaagag tcggcatctt tatccctcac
    14161 tacatgggtt attgaggcga gatatttgcc agtatcgtaa agaggcttag ccaaagtggt
    14221 gcccggagat tcaccagcag cacgccgcgc aagttccgct ttcgcacctt tacgcccacg
    14281 gcgcgcacgc gcttcaacgg tgctatctgc aagcggagta aaattggcag ctttgatgtg
    14341 atttttcacc cctcttgcag ccactgtacc tgcgcggttg agtgctcttt ccgctcccgc
    14401 cgcattacca tcaagcgcag cctgtgccgc agctttaagc tgtggcatcg tctggtcttc
    14461 aactgattta acgccgggta caagatgcgg acgtggtggg atgttttgtg caggtgaacc
    14521 gtattcgttg atatacccaa tcccggcatt accgaacgac acatcatccc gatcgctgtc
    14581 ttccgcaggt ataccgacca gcacatcctt tttggttagc gactttagcg catccagtat
    14641 tgcctgagcg ttatcaaccc tcgttgttac accgcttttg aaactcatag ctggcgtccc
    14701 cctgcaccga acatcgtgat cagctgataa aattcagcgc cataccgggt gttattccag
    14761 aagcctgcgt cagggtttag cgtcgcgctg gtgtcatagc tgacgcttac cttgtcaacg
    14821 gacttggagg actgaacacc attggttgaa ccgcccggac cgccaaccag catcgcccgg
    14881 ctatctgccg cccagagcgt catatagtgc gcaacgaaca actcggcaaa gtacggaaac
    14941 aactttttgc cggtgacgtt ttcgctcagt agttcatcgg ccagattcag acggaactcg
    15001 atttgtgctt cgggatatct ggcagggtca gcaaactgcg ggaagtcgcg gcgaaaatca
    15061 cttactgttg gcaggctttg attctttggc atctttcgcc ccattaccgc cagtccgggc
    15121 ggaagtaatc tgcgcctgca ggctgtcgtt ctgctcctgc agcttgagca gagcgtcttt
    15181 cagatcggca atcagtttat ctttatcggc aatctgcgcc tgaaggctgt caataacggg
    15241 ttgctggtca tcagtttcat tcgatccgct ttcggaaagc tcagcgtgcg cccgggtaaa
    15301 ccagtgcgac gcgacctctt ctggtacgtt atgccgtccc cggccaaact cctgttttga
    15361 ctgatcaccg agcgtcagcg taaacggggt gtgaacatgg atggtaacca gcttttcttt
    15421 cgccattttt agtttccttc tggccccttt cggggccatt ctggttatca gataccgtcc
    15481 acgtaggaca gggtttcttt gtacactggc tcaaccgcac cgagcttgcc gtagtaggtc
    15541 gcaatctggt acagaccacg atactgaaca ggaacgcttt gcagcggaac cagtggatag
    15601 cggacgtatt tcttatcgtt ggtgtaggcg accatacggt ctttaccgcc aaccccgcgc
    15661 cctttcagcc atttgaccgc tttgatttcc agcggaacgc cattctggtg gaaagcgata
    15721 gtgttcacag ccagataagt cagcagtgac tggttacccg cttcggaaac cttacggctc
    15781 gccagcaatg aatactgctc tggcggaatg cgcagatcag aaggcacgac ggaataaccg
    15841 gatgctgccc aggcattcga cagaatgctg tttacgctgt cgaggatctc atcgttggtg
    15901 gagttagccc aggtcttcgt tgcgttgttc agcgtcacac caacgagatt cgtcagacct
    15961 ttcaaaccaa gcgcttcgtc tccgacgtaa acctgttcgt cgttatccat ctgccattta
    16021 agctgcatcc cgtcgtactt ctgagtgtcg atcggacggc ctacctgctg tgccgcagcc
    16081 agctcaacaa cagtccatcc cagctccatc ccccaaaggt tcagcggatt gccgtcttta
    16141 ctgatatcaa cattaacgcc agcaatggca gttgaatctt tgcctaccca gtttttacca
    16201 ttcggattag cgccagaacc cgccacgcca aaactggtat tcgtccagct ggaaatgtca
    16261 tctgcgatag agacgtcttc gcgcaactgg atatcacgtg tccaggtata acccaccagt
    16321 ggcagattca gcccctggtc gagtcgctcc agctccccga tgagaaaggc accggagcta
    16381 tcaacggttg cctgatcaaa agtaatcatt cgtctgttcc ttaaatcttc caggagattt
    16441 ctgcgttgcc gttagcgtca ccggcccccg taaaaaaagc atcaggtaac gcggctgttt
    16501 tgcctgtcac ctctgccgcc gtgatcccac caagcggaac cgggatggaa gcatcggctg
    16561 ataccacgat gtacaccacg cctccttttt taacggacga agcatcagta cccacgttta
    16621 ccgtcatgta cccacgcttc atggcgtcgc ccgggaaatt cttatcagta cccacctggc
    16681 gaaccatgtc tggctgcgat gtggtcggat acggacgaac gtagataccc ttcaccttgt
    16741 cgacggtgtc accctccgcc agcggcacga aaaagccgtc agcgtcgtat ttgccagcca
    16801 gaccatacgc tgcgaaggcg ttatcggatt taaggatcac cggttcgacg gttaagtcct
    16861 gcgggcgaga gatagccccg gcaatgccaa caggcatccg gtacagatat gcagtcattg
    16921 gattatcctt tgcggttaga ccagaagtcg gcgttttgtt tgttcaggga agcgatgctg
    16981 gtcatgccca tgcctggacg ttgtgcatcg cccgtggtgc tgcgggtgtt tctccctttt
    17041 gcaatctcag atacggcgtt aaacgccata tcaaccgatt gtttaggtaa tttgcggata
    17101 tcagcgtcac cgacaacctg gcgaaccagt gttttgtctg cggccgccag cacatcacgt
    17161 ttaaatgcgg tcggtttcac cttacggctc agatcgatac ccgggataat gacttcagcg
    17221 cgataggcag agtcacccgt aatcgtggtt tcctcttcgt tgtcctcgcc gtcgccggtc
    17281 gggtctttct tatctttatc atcaggggtg tcagcattat cgcctgttgc cgttccttcc
    17341 agcttagcca gcagggcctt gagcagggtt ttgatatcgt cctcgccgtc gccggtcaca
    17401 tctccgccca tctccggctt tttgtccggc aatggttgtt gtggtgaaag gttaatgttg
    17461 agattgacgc cgcccggcag atcaccttca tcccccgtta cagccgctgg cgctgagtcc
    17521 agcagttcgt tcatggtgtc cgagtcacct gttttgatgg ccgtgcgcat gcgggtccac
    17581 cagcttttct tttgatttgc cattgtgtct ctgtctccaa ttgcacaacg atttccggct
    17641 ctgcctttgg ggacaagagc cacatggttt ccggtaatat cgacctgctc agccttaccc
    17701 ggctcagcct gttcatattc cgcgtcatag ccacacgaca cttcgcgcag accatcttcg
    17761 ataagctgaa tggcgctttc gtctttgacg ataaggtcag ccagcatcaa atcagactgc
    17821 tcaccagtcc cgcgccggac attctgaaga tgaccgaccg caagctcttt ccagttctcg
    17881 ggattgacca accggacgtt cccgttttca tcctccggat gcaggatcgt gatgctcatc
    17941 ccttcgaagg aggcaagcgt ggccggatgg aatacctgct caggagagcg cgttacgact
    18001 atctcaccga acttgtcagg cttgaggttt ggcagatcag cagcgccgta aagctgctta
    18061 cccgttcgac ctatcggcac gtctctacac agcagcgagc cgtcagccag ctgatagcgg
    18121 gtttccccca gccgggtatt gaaaaaatat ttcatgtttt acctgcgatt caggcgagat
    18181 aagaatgagg gttggggaag acgatttctt tataacagcg gcagttcggg agctcgccag
    18241 cgtgaccggt catgccgtca agcgttgggg gtcgtcccca ttcgacaaac ttcccttcca
    18301 tctcccgatg agaatgccgg acgtcgccat cttcggctgt acgccagata taaccattcg
    18361 agccgattga cagcgctcgc gcctgatcga gcgcgccggt tgcacgtcca agttcggtac
    18421 gggcgataag gtcagccctg gactttgcta tatcacccga tgctgcaatt tctttagcaa
    18481 aatgctccgc tctcccaccg gtcacaacag cttcaatcgc ccgattctgg atgtcgtata
    18541 ccctgtcagc agcctcgagg ggtagcgatt taatgtactt aacctgttcg gcaacgatgg
    18601 atttcatcac ctgccctggc ggggcattgc tcaccagatt gcgtagttca cgactgatgg
    18661 ttttgctgtg tttccgccac tgctcatcat tcttgcgcac aatgtcagcg gtaaagttct
    18721 cagcaacctt cgtcgcccac ggcgttataa tttcgctgta gcgctccagg gcctccatga
    18781 tttcggtgac gctatcgttt gaaccatcgt agtgcccatt tacgatatcc ccgaccgccc
    18841 gcgctatctg ccgtaggctc gttcgatatc ggatctccgc ctgtcggctc tggcggtttg
    18901 tcgacaagtt cgccgatgcc tggtggcgct tcgtcttcgg cattctcgat atcctcgtcg
    18961 gtaatggatg cgccgatgcc agtaacatcg gagttctcac gcaggtcggt catagcggct
    19021 ttggttgtca tcagacctgc atccagcgca ttgacaatcg ccgttgtggt attcacagcc
    19081 accgttgagc ggtccacatc tgacatctgc catagcgggt taaactcaaa cgtgaaatcg
    19141 tccggcagcg gcttaccgag ctccgaacga tgcataatgt ccagcacccg gcgcactggc
    19201 aggcgtaagc gacgctcctg caatgaactg acccggtcat aatagttggc aaggtctgcg
    19261 tcacccgttg agaaaccttt aggggactgc ccgaagaggc gcaccaatgg aatgccaaca
    19321 gcaccgctaa tctgctcggc gaactgcgaa agaatgtcat ccagaccgct gaaactgtac
    19381 tggtgggttt cgaaggtatc cttggcatcc attagcgtca tgccttcatt gctctgaaac
    19441 tggcggatca gatcaatgtt tttcagcaac gcctcgaatg ccgggccgcc cagtgcaata
    19501 agctcacgga gtttttccac tttgtaggtc cgcagatgcg ctttgtagac cagctgcgcc
    19561 gcaccgacag tggcgctgtc gaacgcagta agccgatccc agatacgctc tacaaccgac
    19621 attccccatt cgttctcggt catcttctgc tggaatggca gcgtcacccc atcgaagcga
    19681 atcaggcggc tatggtgaat acgccaggcg gggatgcccg ttgcggtggt caccacatca
    19741 taaagctcgg gcttgccgag atttggcccc atctctttaa tgcggcgcgt cagtaccggg
    19801 ttaatcatcc agcggtcgag cgggagaata cccttaaact tgccttcacc aatggtttcg
    19861 agccgtagcg gggtcatggg cgcctgacct tctatcatga tgaagcccac cgcgccgccg
    19921 tagagacgag accatttcag tacgtcgttc agcgcatccc agatttgcaa ctgatccagt
    19981 tgcgcttcga gagtgccacg gtcttttgcg tcaatctcag aagtgatgcg aatgcctttg
    20041 cgggtcatgt cgtcggggat agcatctacc gcttcaccga tgagccagga tgagcgatag
    20101 gaccattcca ccagcatacg gttgcggctg gtgaagttcg cccggtaggt cgatgcggag
    20161 tgctggttag gcgtctgcat ccccacgcgg gtgacaaagt tctcgtagcc gtcggccgtg
    20221 gcctgcaccg ttcgtcgcga ggcttgtttg tttcgtgcca tcaggcctgt ctccccaact
    20281 gttcccagat gtccagcgat gtgtcggttg gcgcgaaagc cataatgaaa gcgtcggcga
    20341 cgtttggtga cggtatatcg cgttttgcga ggtctttttt actttcgacc atcacccgtc
    20401 cgttacggtc gaaatcgcga tgaggcgttg tcagttccag tttcagcttt tcaagcaacg
    20461 gacaacgaga atctatgctg atcagctcat ccacaagata ctgttctccg ttgttaatag
    20521 cgttaaacgt atttctgaaa cggtcagcca ccagccacca cgcctgcgcc ttaagatttg
    20581 cgaaaaagtc tttgttgggg atgccgttgt attcgtcatc tggctcatgc acacctgcac
    20641 cggcgttaaa ccgctggtaa ttcacacgtc gcgcgtatgc gttctcacgc ttccggtcat
    20701 cgttaatttc cgagaacttt gcgcccgccg acgcgccaac accgattgag tcgtaaacga
    20761 tatctgcatc gcgctccatt gcagcctggt aagtgcgctg gcaactcttc agcaactcgt
    20821 cctctttggc cttccattca tcggcccagt agataactga gccataacgg tagacgttgg
    20881 cgcacttatc cgcgccactg tcggcgacat cgaaaccgat gcgcttacgt ccttcaggac
    20941 cgaaatccag aaccttatgc gcgtcaacag ccgcttcaat ccacgaaagc ttaataattg
    21001 ccgcatcatc atcagactct ggtacgccct cataaacatg cacaaaccct tccgggtcac
    21061 gacgccttgc cgcatcgata accttcagca tggtatctga aaggaatgga ttctcgtcgt
    21121 agttgatttt gcgaatcagc gtatcttctg gcggatcgac cacaaagtta cgccacacga
    21181 aatcggtgac cagtccaggg ttaaaaataa accaacactc tgaaccctct ttacggattg
    21241 tcggctccag tattttccat tgatattccg tcagtgcatg ggcttcttcc agccacaaca
    21301 catcgatccc ctccagtgac ttaatttctt cgatgttgcg ccataaccca taaaaaacaa
    21361 attccgagcc ggtaacccgg ttaatgattt tgttgttcag aatgcggaaa cgatgccgca
    21421 ggccaaaccg gtctatctga attttgagaa gcgtgtaaac cgattcttca attttgttct
    21481 ggatctggcg agcgcagcaa aaacgcaggc tgtatttatt tgccaagaat attgcaaatc
    21541 cggctgcatc ccatgatttt gacgatgacc gcccgccata gagcacttta tttcgcgcct
    21601 gcgtggtcca gaagtttctc agggccggat taagcgtcgg tctggatatc ggcgtagaag
    21661 tcattcaggt cacgttctcc gttaccatca tcaataccag catcacgtcg cagcctgtca
    21721 gcctcgagag ataccttatc agtagccgcc aaacgataat cagtgtcggc gtgtattttg
    21781 ctaacggtcg ccagcgttcc aacgatggat tcaatgcgca cggtgttacg catcatcgcc
    21841 ttttcggcag cgctgatgtt atccatcaga attttgcgct gctgctcttc ctccgcatcc
    21901 tccagcaggg tgaaccagcg accaatgttc tcggcggcca tcaggttatt cgcccgcagc
    21961 cgaaagagct catcttcaag cgtcagcgct ctggcatcct caacaacttc atctttcagt
    22021 agaaggcgcc gggcgtaacc gccatgtttc agtgcatact gattaccagg ctgaaaagga
    22081 ggatgattag tgacaacctt tttgcgtacc gcttcgggtt tcgtatctgc gggaggtccg
    22141 gattctggcc gcgaatgctt ttgcactgcg ccggagctgg caggcctcct cgtggtacgc
    22201 accgtgtttt tttgcgtacc atttttgcgt acctgcgtaa tatttttgcg tacccactcc
    22261 agcttctttg ctttcttcct tatcgcccct tccgttacgc cgtacagcgc ccctatgtcg
    22321 cgaaggctca taattccggc ccggtatgcc gtctcgatgg cctcccagtc cggttttgcc
    22381 atgttgctgt cctatggtta aagccattaa aaaagccacc cgaaggtggc atttgtgatg
    22441 gcaataaaaa ccgcccggag gcggcttgtt atcaattact taatagctgt tcgatattag
    22501 atgggatcgg gacaccaggc tctactttta gtttgtttag cctttcgaca atagacagtt
    22561 tctccgcccc actcgctgct tggtagtagg gtcttacccc ttcaatgata tcattagctg
    22621 taactgaaga accaacgcca gcgcctggct cgtttttatt caaagagctg tgaataattt
    22681 gctcaatagc ctgattcata gttattaccc aaaatgagtg gttacatacc acaacttgta
    22741 tatatgtcca ccacaggcct ttatcaagcc cacccgtaga taggctttgt aatggctact
    22801 tcactgtttc gatggtcgag ccgtgagagt tcatcacgta aacctggtcg ccaggataga
    22861 tgaactggta acggcagcca tcacccgcgc cggggaaatt ttcactcgga tattcctcaa
    22921 taatgatggc aatagcatca gtatccagca catcagtacg gtcactaata accagttctt
    22981 cctcctgcag cgctttggtc atttctggat cttcatagat agccgggagc cagtatgcga
    23041 agtccgggca ggctgagtta tgagtaagtt ttaaagtatc tgcgaacgtt tcagaaccgg
    23101 ccctggctat cgagatggat ggctgctcac aaatatgcgt aacaccgttg atgatggttt
    23161 taactgtaaa catagtattt ccttcttcgt cttcttgtta caacaaaaag ccccgctagt
    23221 gcggagctat gggattgttg gttgactctc tcaccgagtt gtaaatgcgc tcacacgtca
    23281 ttcctgcgcg gtagctttcg tcagatcgct cagcataata ttgagcttct tctgcaaggc
    23341 ttccgaacat gtcggcgagc actgtggcgt cggctccggc tgttttgctt ctgacggcag
    23401 cggcaagatt tgcggtgtgc tttgcggcgt ccaggcgggt ggcaagtttt tttgcttcgg
    23461 tacgcagctg gctaacagtg gcagacaggc cagcagcagt ggcagcagat ttagcggctt
    23521 gcgcttgtgc atctttcaca gcctcatcac gggcaataat gcggccctgt tcaataatac
    23581 gggcggcggt ctgggcgttg acttcctgag aggattcagc gctgtcgcga tctgcccatt
    23641 ttttttgcca gcccctgtca ctccagacat taccggcgat aaacgcacca gccatcagca
    23701 aaataaacgc cagctgcaac cagtatcttt tcagaagagc agataacaga ttcataccag
    23761 caccgatttt gctttctcaa agcgctctcg ccgatcgccg aagccgttct gccctccgtt
    23821 gatgatctgc gtaacacgta ccaggtcgcc ggaatatttc agacaccctt tagtcacaaa
    23881 aaaccacgct gcggatcggg cggcatgacg ttccagttca agctgtcccg gattcgccac
    23941 cagatccagt ttcagggcaa cgccacatct ggtgtaattc tccagcccgg taatctggat
    24001 aagcccacgc ccgcgatact tccagccatc tccggcgtct ttgttaccca tgcggccacc
    24061 gtaaaccaga ttggctattt gtggctggtg ggcaacctgg cgaccatcaa tacgccccag
    24121 catttcgcac tgatacggcg tcaggcgttt accaaacgtc ttcttcagcg cctccactga
    24181 ataattgaag ctttccttca gaacagtaaa tcctgctgat tcatgtcccg cttgtgcaat
    24241 aaacatggcc tgatccagtg gcgcagtgat accgaattcg ctcattgccg ccgtaatata
    24301 cggataccag cgcgcagaaa gcccggcgct aataccagcc gcctgctgaa attgttgttg
    24361 attcatcagt gcctcagagc atcaaccaga cgcgccacat taccgcgagc ccacagcaca
    24421 gcggcgcaga taaggatatt caccatcacc accagccagt gggatgattc atataaacca
    24481 aaaacaaacc ggaaagggac actggcatac accagcacca tgacataggc cagtaacgaa
    24541 atcagggggc ggtgtgtcgc atcaccgcgt cggtaaaaca tcagaacgat gactattacc
    24601 ccacaaatta cggcattcag aactgcagaa gggtcatttg ctaccatctg atccccctcc
    24661 cctgatacga gagagaatac tgaacagagt gttcagatcc tgactgttga gaaaagtgag
    24721 aaactttata cacattgcag aaataattac tgcgccaagt gcatccagtg gtttttcata
    24781 atgcgttatt gccgcaagct tagtacctat cagcccggcg ccaagcactc ccacaataaa
    24841 tgacgtgata aaataagcga ccagcctgat gcgtccgatg ttggttgccg tggcgacata
    24901 aaataccgag ccggcaaaag cgccgaatac cacaccataa tcggttccgg ttgccagacc
    24961 gaatacactg gcccccatta atccaccagc caacactgtc gcactggata caggttcgga
    25021 cattcatccc cctctggttg tgtgggtcct ctcagttatg aggggaaata ataaatatcc
    25081 tccggcatag ccggaggata tttattcata aagaacacaa ttaagaataa taccgattta
    25141 attaaaataa cttgatctca cagttgaaga atgaataata gcgagccctg ccaaggcagg
    25201 gcatagaaat aaccaacgag aagaaatagg taggaactaa tgaaaaacac cgctctgggt
    25261 aagttcattt ttatcgtcgg caccgcgtta ctgctcggtg gctgtagtgg catggtcatg
    25321 cctccctatg ccacccacgg tacatcggtc ggaatcattg cgccggcggg aggctatagc
    25381 gagtggcaca cggatagccg caaccacacc acaggagaca gtcacagcca gtcacaggga
    25441 aactgcaccc aaagtgaaga tagccagctc agcgaaaatg gtctcacacg gacacaccaa
    25501 agcaactgta acacccgtag tcaaacccac agcagtagca ccagcaaaac ccgctccagc
    25561 agcgtcggtt tcagcgtcgg ggggcctgtt ggtgctagca tagggttgat caagcagatg
    25621 gagtcgatga accgtgcgcc agccaacgat atgagtagta atgagatgtt caagaatttc
    25681 ggtttctagc acataacgcc acctggtacc gttgtggtgt ctggcccggc ggctatctgt
    25741 aacgactcac aatcgaaaaa agtcagactc gcaatcagcg caaattttgg ctcacaataa
    25801 ctgcaactga aatcggacgt ggactcacgc taagtgagag cgaaatccga cgctcagagc
    25861 caaatgagaa gttttttcca ttggcagtaa ttgtgagcca gcaaaaatag attgtgagtc
    25921 cattgaatgg ggatcgttgt gcattttcat aagcctcacc tccgatagct cggatggcgc
    25981 agtgtgaagt aggaaggccg cccggtggat caacgacaaa gctcagaggg attattccgg
    26041 acggcacaaa cagaaaagcc ccggcaatca ccgaggctta aattgttgcc ggttaccgct
    26101 ccggcgcgat cagcaaaagc tatcgcggta tcagattgtg gtcctgcccg tgtgagcttt
    26161 gcggtcggct ggaacatgta gactccgcat cactccccgc actttgtctt attggcgtcg
    26221 ggaatccata aaagaaaacc ccgccgaggc gaggttctta attcttgtaa cgtcacaggc
    26281 gtaataaccc atcgttggaa tcaggttagc cattttccgt taattttgca atagctaaat
    26341 tattttggtc atcgagtcac gtttcccaga accttttctg catacgactc ctcaatatgg
    26401 caatgctcca ccagtcgatc gaaaaacagt ttatagttgt accgccatac catttccgtt
    26461 actcctagtg ctttaaaaat ctcggtatct ttgagacgtg ggtagcctct tcccttgcat
    26521 cttgggcatt ttttataaac cggcacgccc tgcaactcag attttttctt atcgagaatt
    26581 tctccgcgtc cccggcaacg acattcattt ttcacctggc ctttgccatc acacgcctta
    26641 cacactacgc gcacctgctc acgaactgat ttccacacct cccagtcgga cggagaaata
    26701 cctttcgtat cttttaccca ttttggtggc ttaccatccg ggtaagtaac cttgttcgtg
    26761 aaaacctcag catcaattaa tttagcacca tgacagctac tgcacgtcac caagctggcc
    26821 gcactgaggg aataatcgcg aaatacataa cgcgccatag tgtcgagaaa ttttgagcgc
    26881 ttaccctttt ccattttccg taatgcccca tgccgttctg cacgctgctc tgctaattgc
    26941 ctgatgtagg cgatgatatt ttcagaagat aaaaccccgg cttttgccag atacaattca
    27001 atacccactg cggcttttgc agtaagtagc ccgagagatg ccattacgtc agtaatagtc
    27061 agcgtatcag acgttattcc gcatggtact gcgccgggca tcatggattt aggtgaaaaa
    27121 tatttcggta aggactcaag attcatttcg atgctcccgt tttgcttcaa tgcggacgta
    27181 attacgaaga atgcggtatg ccacaggaaa agatccccgg tatcgataaa ttcggagacg
    27241 caaccagcgc atgcggagta tctcgatcag ttctggtttc atgcggcctc cagctttttt
    27301 agcgcacgca gatccgacag tgccgcgagc ctgatttcct tcagctcctc gaccgtccag
    27361 cggtgcgggg tgttattgtt ctcgagtgcc agcaccgccg cctcaccgta acgctcaacc
    27421 agcgcggcac gatatgcttc gatgttccct gatttgtaga cgttgcagac atcacactga
    27481 agatggatgt tgaagcgagt gaagcgcaga tgcccggcgg cggccgtact cctgtaatgg
    27541 cctgcatgcc atgcgaatgc cgtcttcgtt ccacaggaga tgcaaccgag tccttctgcc
    27601 agttcggttt cgcggcaaat gtcatttacg gcgcgctgcg tcaagtcaat ccagtgtttc
    27661 agcggcttaa ccgcggcttt ccgctggcgc caggcggcgc gttctttttt ctcagcggcg
    27721 cgctgaaggg attgcgcctt acgttgcgcg gcttcgcgag cttttctggt ctgttctttg
    27781 ccgacggtgc tggcgcactg gtacgagcaa acgatctgcc cctctcgtat cgggtgaaac
    27841 cactggcggc attctttgtt tgcgcactta cggcgcggta atttagccat gttcaccccc
    27901 agaccttttg gcgtaaggat tttggcgtcc gcacccggtg tgcatattct ggtaatttcg
    27961 cgctgacagt ccaggtaatg aagtcagggt tcaggctctt ttctgtcctt acgccccgct
    28021 tctgataatc cgatatcagc gtgtcggcct gctcggttgt gcagtcgtga tgatggaacc
    28081 aggagtattt catcgccatc accccgcaaa gctcatgagc tgggcggcgg cgttctccgc
    28141 ctcgcgctga gtacgaaatg tacgtgataa aatccaccgc cagagcacat caagcgcgga
    28201 tttatacaac tgctgaaatt cgacctcatc catgctggaa aaagcgatgc tgcggggatg
    28261 tttgcgaagg gtgccgtccg gtaactggat ggcgtcatag tgaccagcct caaccgtcac
    28321 ccatgcgcgg tatgcatcga aagatttaca gaggctaatt ccgtttgtta cccggcggtt
    28381 tgcaatctgt tccagatact gttcagccgc atccagtaat gcgctttcat tcccgccata
    28441 tgcagcgaga aactttgcat aaccgtttac cagtttgcgc tcattggcag aaatggcgcc
    28501 gccggtgggt tcccagtatt caaacccaag attaagcaac gcgaaaaagc ggcgatggaa
    28561 tgcaggattc ctcacctgac ggaactcagc caccagcacg gcgccgagtt tgatttttga
    28621 ttgcagaata tcactggtct ccggcgttgc ggggatcaga attccagatg actgcttgat
    28681 gagttgtaat tcgtgcgcca tggcgttctc cgtggcgcag caggtgcagg ttgttcaggc
    28741 ctacatttga agtgtatcaa agcaacgggt aattcgatag cctgcctttt ctaacatttg
    28801 cgtaaataat gttggagttc caactatgtc atcagggtga aggggaacaa aagatatctc
    28861 gtcaccacga cgatacatca gggcgcgtcc gctatccgga atactaccga accttgccac
    28921 tacacaatga tcgtaacaac gtataaccgc ataccctgat tctggtaagt cttctaacat
    28981 gtaacccccc gtcacactga ctttatttct ggaaacgtct gcgactccac gatgcttaat
    29041 atgcataaaa ccagtcgtca gcgctttccc acgtttcctg cagaatgctc tgtatacgtt
    29101 ttttatcgcc atcagcagca ccgacgatac tcagaccatc ctgactgcct cgacggatgg
    29161 ttaagttgca gttttcatac tgattctgga gacgggtaat taattctttt tcaagtgcag
    29221 gcacggcacc ttccggaagc tgttttgtcc ggctgataac aagttcaatt ctcataattc
    29281 cctctacatt taactactgt atataaacac agtatacctg ttagaaagaa tattcaagag
    29341 gtgaatagca ctttttgcaa aagccatgcc attgtatagg aagagttttt cctagtattc
    29401 ggaatttact aaatcagtta ggcaaaggct gaaagcgaaa aaaaacccgc cgtagcgggt
    29461 tattcattcg atttgattcg gatgtaacgt gaggtcgcca cgagagcctg aatcatatta
    29521 ccgccagttt cgcataacgt tctggaatca tactcgcgtg accagtggca taaccaattt
    29581 tccaggtcat ccactgcgta atctttacga gccaaaccct ctgcgatggt tacaacttca
    29641 tcactaggtg ctgtaagctc atatccgttc agcaacagga atacgtaacc tgccatcata
    29701 gcggtgcgtt tgtttgcgtt tgcgaatgga tgattctgga ttaggctttc aattagaaca
    29761 gcagacagac gaaacatatc gtctgtctgc tcataatatc gaatggtgct tggccgggac
    29821 tgggaagaac tgaggttgtt cggattcagt acgcctatcg gttcatttgg cgtctgaatc
    29881 tcgatcagag acctgttgat gtaaacgata tcttcaatgg aaagataatt gactccttca
    29941 acatactcta tcgccatccg tttttactca gacctttgaa agttcttcca tcgccttctc
    30001 gtaacgagca aacccaaact caaaggcgtt tttaacttga ccagtatgtg aacatgcttt
    30061 gctgatcgct gcacgaggtt tcgccaccat ggatttgtca cgaggcggaa tgtacaagcg
    30121 atctgccttt tttaatgcgt gacccatgat tatcaccctc atgcacgttt ggcagtgctt
    30181 tctcaaattg taggatgtaa acacatccaa agaatttatg atcactttaa gtggttgagg
    30241 acaatttaat accattcgtc atatttgagc aatgggcctg cgtctgaaga tagaagcatg
    30301 ttcgacgaaa atctcaatgg ccactttgca agttaacgac attttcgcag aagttacccc
    30361 tcaggtaata gtaaactatt gtcacgatct caggagatag gctggtcctg tgagtcgatt
    30421 aaagtggaca caaagccaat aaatagcact ttttgcacaa aaatcatatc ctggttggaa
    30481 tgcacaacgc ccaacattgc tgtagtattt cgccccctct gaatgtagcg ctcagatttt
    30541 aatcgaccca atcccgccct gcttcaacat caagccccgc atatgcgagg cttgttgggc
    30601 taacccgccg cagcgggtta tgacgcaaca cttcatgccg gagttttccg atccgtcttg
    30661 ttgtgaacct cccagagact aatgccgcaa ctgaacacaa actcagccag ataatttaaa
    30721 ccggaccatt cccggatgcc gccgcgcgcc gcttccacaa atacagcgat atcctgatca
    30781 cgccacactc caaacaggcg ccagccgcca ctgtcagtct taacggctgc tatacgcgtc
    30841 agaacaccag tctggtacag gtcagtgaac gcaggtttct tcctggttat tattcgcata
    30901 tctacaaacc taagaaatgt tgattacaaa tcactgattc gtattttttg attttgcact
    30961 aatgccgatc acaggaccgg catataggtg tttcacgatt tacctccgtt gagcatggca
    31021 gcgcgacaag cgttccagat ttcttgcgca tcgtcgtcgt tgaaaagcgc atcagaatgt
    31081 gaagccatca ggtcgcgtat ttcttccgga cattcttccg gcactaccgg cactggctgc
    31141 tctttgatat gcagtcgtgg ctcgccgtct ttcggttcag gccattcgcg cttcttgttc
    31201 accgccagct tttccaccat cgccagggca atctgctcgt cagtaatacc agcgcggcgt
    31261 tgtgcatccc ataacaggaa ttgcatatca gcccattcgc tcaggtcgcc aagttctgcg
    31321 gcagtttcca atgcttcttt tgagaggtgc ttcagtggac cgatggggcc aacatcgccg
    31381 aatgtggcat cagaccagtc agcatgttca tggcgaactt gttctcgttc cagcgatgcc
    31441 agcgcacgct tcagcacaat aagaattttg gcgtcgtcat cgctcaggcc aaacggaata
    31501 tcatcgcgag tgttttcaaa ttcagcgatg gtttgctgta gccattcttt ggtaatagtg
    31561 gtcatgggtt agtccttcac aaaaataatc cagtgggttt tatcgttctt gccggtgcgc
    31621 tggccaataa ttggtttcac gtcagtaagc gccaaaatct ggctaaccgg aatctgcgtt
    31681 tcgttccatt tgaaaatgag aacgccgtgt gccctcagca cccgaaacgc ctctttgaat
    31741 ccggcgcgga ggtcagaacg ccatgttttt ttgttgagtc tcccgtactt tttgcccatc
    31801 caggccgttt ggccgacacg ttccaggtga ggcggatcaa acaccacgac cggaaacgac
    31861 gcatcagcga acggtagcgc acgaaaatca gcaatgaggt caggactgat gactaggcgg
    31921 cgaccgtcgc acaatatatg ctcctcggcg cggatatcgg cgaatacggc gcgttcatcg
    31981 cgcttattaa accaaaacat gcgcgagccg cagcacatat ccagaataga ttgcgattcc
    32041 atcacgactc cttaaccttg atgccagcgg tgcgtatttc gtgtatcgca ttatcattac
    32101 cagcacacca accctcggca taatcccggc tgaatccggt catgtgcatg acttctccaa
    32161 cgctgagttt tgacaggttg accttccgcg cctccagttc tgccacccgg cgagcctcac
    32221 gggttgcaat tcccgcgtat tcaatcaggc gttggtccag ttcggctatg aggcgttctg
    32281 ctgtatccaa atcctcgcct aacttctgcg ccatccgaaa ccaattggcg cgctgttcct
    32341 ctttggtttc cagctcatcc agcagcgcca gcatggtggc ggggttggct gcggcgataa
    32401 attccgcgtc acgtttctca acagtatggg ccaacgtcac ttcttcaccg caaagagaaa
    32461 atggcgttac cgtgatgcca ttgaacagtg atgaggtgcg gcgccaattc cccggcgtag
    32521 ccctctcagc cacttcacga agcgcccgtt tgtcgatgtt gctcattggg ctcccccctt
    32581 gttgatgctc attttggatg ctccataaac ctgcattacc gggcttttct ccagcaccgg
    32641 cagcgctgaa aatcccgtta cctgactact gctgtatcgc ctgaggtcat aatcaatcac
    32701 cgcacgctgg tctcggaaaa tgccgcagcg gccatgacga atgaagccgc ctcgctccag
    32761 cgcgatacgc agatatttct ccgccgtggt tcggtgcacg ccaaaaatcg caacgacgtc
    32821 gttcgtcgtg atgcgcccct gctctttcac cagaccgata atccgctcaa gaataatcat
    32881 ccgttcgctg tgtgttttag gtcgggccat ttttaacccc ttatttcaca atccggaggt
    32941 ggctaacgtt tttccggtag ctttcccagt caaaattcac ccacatccct ccgtccatct
    33001 ggaggcgatc gataaccctc gcgcccagtg aatccaacag cccctcgtgg ttaagattcg
    33061 tcagaacgcc aacaggtcgc atcgatgaga gacggcgatc gataacctga ttgagaatga
    33121 ccttctcacc actgctcccg cgctgaatac cgacttcatc cagtaccagc aggtcaactt
    33181 tgcaaaggtc atcaagcagg gacgcttctg attgcccacc gtcgtagcac tcacgaaccc
    33241 tgagcatcag gtcaggaatg gttaccacca gaacgctatg accgccggcc agcagatgat
    33301 ttccgattgc cgccgcaaga tggtttttcc cggttcccgg accaccgctg aacacaaagc
    33361 tcgcaaatcc actaccgaag ttctgggcat aactttttgc catcgtgtac gcttttcgct
    33421 gcccctcccc gcttacttcg tagttagcaa acgtacagct acgatggaga tcctgaatgc
    33481 cagatcgccc gaaaatcttc tcggtgcggg atttctgatt catcctgtca agctcttcac
    33541 tgcgtttacg cccttcggct tcctgccatg cccgccactc atcagcagtc gagaatttcg
    33601 gctgcacact ggctgggata attcttttca ggcgatcaag cgcactgcca gtaccgatta
    33661 cgtttttcat cgttaccccc tgaatccggt aggaatggtt ttgtctggcg cagaaatgtg
    33721 gttcacatct ctgccagctc ttcggtcgtt gagagcgaac ttcggtttga atagtccctg
    33781 gtagccgttg gcaatgcttg tgttgatgac gtttaccgga tcgtggcctt catccaggca
    33841 ctccttcaga agcctgaaag cttttgttac cgtcagttcg gtttttatgg gctttccgga
    33901 ttgctggcgg tatgtgaccc attcgttcca cgacgcagca ttcagccatt cgggaacagg
    33961 aatactcaac ggatcaaact tcacttttcc cttaggggga ttaaaggggg ttagatcttt
    34021 tatatttgtc tttggaataa tgtctttggt gttccctgtt ttcggggatg cccttccctc
    34081 ttttcgggga taactatccc cgttttcagg gatggctgaa tggggtaaaa cgctatccct
    34141 gttttcaggg ataactatcc ccgttttcgg ggatgccctt cccccttttc gggtataact
    34201 atccctggtt tcgggtacag aaataatcca tgtggcaatt tcatcatcag gaaaagacac
    34261 cggacatttt gagcaatgtg gcttggaata agcccattta tccaggtttg tattaatccc
    34321 tatgtatctt gtttgaccaa tacggcgcag gataatgatg ttacgatagg caagactcag
    34381 caccgcttcg gatacatgct ttaccttcag tgttgtctta tctgcaatga ggctgttggc
    34441 aatacgatct gattttttcg accagccata agtcagccgg ataatcgcat tcaaaacacg
    34501 gaactcacgc cccgatagtt caacgataca caaggcgtcc tggatctgat tagctaaacg
    34561 taaatagcca ttttccagat cagccatacg gcactcctgt tgcgtcggta tcggcgcagg
    34621 gaatttgtat atttcagcgg tatttgacat actcatctcc gcaattacct accgtttttg
    34681 caccagaaag ccgttggtga cccctcaccg cggctttcgc ctttttggtt gctgtcattt
    34741 tcagtcccac cccagcgcat ccggcctggc tcgttcagcc tttagcccgg catcagcgag
    34801 aatctctacg gctgtgagat agtttctgga taccagtacc gcttccggtg gcgcggcctg
    34861 aatcccaaga aaagccagct ctttcgccat gttgcagaaa tatccctcag ctttacgcct
    34921 gctgactgtc gactcgctga tgcccatatg ctcggcgtat gatttctgcc ctactgatgc
    34981 aagccggttg agcaggacac tctctatctc aatcgggttg atttctggtg ggtctaactt
    35041 tcgtgcaatt gcgttctcca tgggtaaata tcctctatgg ttatttggct gatgcctctt
    35101 ggcttggtaa gccatcggtt gggtttgggt agagatcagg acgcagttcg tgtggggtga
    35161 ctttccagtc aatagctctt gccactcgaa ctacaagttc gccgggaact ttgtttttaa
    35221 accagccgtt aacggtctga gcacggcgac caagtcggcg tcccaaccca gcctggctac
    35281 ac
//
LOCUS       DAJVSD010000016        35039 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.016, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000016 DAJVSD010000000
VERSION     DAJVSD010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 35039)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35039)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35039
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.016"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            124..366
                     /locus_tag="OQP62_000650"
     CDS             124..366
                     /locus_tag="OQP62_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein"
                     /protein_id="HCS1720283.1"
                     /translation="MKKVLYGIFAITALAATSVSAAPVQVGEAAGSAATSVSAGSSSA
                     TSVSTVSSAVGVALAATGGGDGSNTGTTTTTTTSTQ"
     gene            430..1068
                     /locus_tag="OQP62_000651"
     CDS             430..1068
                     /locus_tag="OQP62_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000824802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbF family lipoprotein"
                     /protein_id="HCS1720284.1"
                     /translation="MKRLALILICLLLQACSATTKGLGDSLWDSLFGTPGVQLTDDDI
                     QNMPYASQYMQLNGGPQLFVVLAFSENGQQKWVTQDGATIVTQHGRLVKTLLGGDNLI
                     DVNNLATDPLAKPGQIIDGATWTRTLGWTEHRQVRYATARSVFTWRGTDRVNVGSEET
                     AVRVLDEEVTTDQTRWRNRYWVDSEGQIRQTEQYLGANYFPVKTTLIKAAKS"
     gene            1065..1799
                     /locus_tag="OQP62_000652"
     CDS             1065..1799
                     /locus_tag="OQP62_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis GfcC family protein"
                     /protein_id="HCS1720285.1"
                     /translation="MMKRTISALALAFVASSAFASGTVTVFTQGNSEPKTLTDAERLL
                     DLVGQPRLATSWWPAAVIGEEQATVTARQQQQELLGRLAALSAEEDGDAAAINTLRRQ
                     IQAVKVTGRQFVNLDPDVVRVSERGNPPLQGHYTLWVGPQPTQVTLFGLISQPGSQPF
                     VPGRDVASYLEGQRLLSGADRSYAWVVYPDGRSQKAPVAYWNKRHIEPMPGSIIFVGF
                     ADSLWRGTPEAINADILHTLTQRIPE"
     gene            1799..3895
                     /locus_tag="OQP62_000653"
     CDS             1799..3895
                     /locus_tag="OQP62_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbH domain-containing protein"
                     /protein_id="HCS1720286.1"
                     /translation="MKKTHLLSVLALGISAACHAETYPAPVGPSQSDFGGVGLLQTPT
                     ARMAREGEMSLNYRDNDQYRYYSASVQLFPWLETTLRYTDVRTKKYSSVESFSGDQTY
                     KDKAFDVKLRLWEESYWMPQVAVGARDIGGTGLFDAEYIVASKAWGPFDFSLGLGWGY
                     LGTSGNVSNPFCSYSDKFCSRDNSYKEAGSVDGSDMFHGPASLFGGVEYQTPWQPLRL
                     KLEYEGNNYQQDFAGKLEQKSKFNVGAIYCVTDWADVNLSYERGNTFMFGVTLRTNFN
                     DLRPAYHDNSRPQYRPQPQDAILQHSVVANQLTLLKYNAGLADPKIQVKGDTLYVTGE
                     QVKYRDSREGIVRANRIVMNDLPEGIRTIRVTENRLNLPQVTTETDVASLKRHLEGEP
                     LGHETPLAQKRVEPIVPESTEQGWYIDKSRIDFHLDPVLNQSVGGPENFYMYQLGVMG
                     TADLWVTDHLLTTGSVFANIANNYDKFNYTNPPKDSHLPRVRTHVREYVQNDVYVNNL
                     QANYFQYFGNGFYGQVYGGYLETMFGGAGAEVLYRPVDSNWAFGLDANYVKQRDWRSA
                     QDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVV
                     GGYATITDASPDEYGEGDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGR
                     KFGLYDMTSDRSVNFR"
     gene            4038..4448
                     /gene="psiE"
                     /locus_tag="OQP62_000654"
     CDS             4038..4448
                     /gene="psiE"
                     /locus_tag="OQP62_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HCS1720287.1"
                     /translation="MMPLSRSRLEFIATILQNVLNLGLLTLGLILVVFLGKETVHLAD
                     ALFAPEQASKYELVEGLVIYFLYFEFIALIVKYFKSGLHFPLRYFVYIGITAIVRLII
                     VDHKTPMDVLLYSAAILLLVITLWLCNSNRLRRE"
     gene            complement(4614..5504)
                     /gene="malG"
                     /locus_tag="OQP62_000655"
     CDS             complement(4614..5504)
                     /gene="malG"
                     /locus_tag="OQP62_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalG"
                     /protein_id="HCS1720288.1"
                     /translation="MAMVQPKSQKLRLFITHLGLLIFIAAIMFPLLMVIAISLREGNF
                     ATGSLIPDKISWEHWRLALGFSVEHADGRVTPPPFPVLLWLWNSVKIAGITAIGIVAL
                     STTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYIPFIGLNTHG
                     GVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVV
                     FILSFIAAITEVPVASLLLRDVDSYTLAVGMQQYLNPQNYLWGDFAAAAVLSAIPITL
                     VFLLAQRWLVNGLTAGGVKG"
     gene            complement(5519..7063)
                     /gene="malF"
                     /locus_tag="OQP62_000656"
     CDS             complement(5519..7063)
                     /gene="malF"
                     /locus_tag="OQP62_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalF"
                     /protein_id="HCS1720289.1"
                     /translation="MDVIKKKHWWQSDQLKWSVIGLLGLLVGYLVVLMYVQGEYLFAI
                     MTLILSSAGLYIFANRKTYAWRYVYPGLAGMGLFVLFPLVCTIAIAFTNYSSTNQLTF
                     ERAQQVLMDRSYQAGKTYNFGLYPAGDEWQLALTDGETGKHYLSGAFSFGGEQKLQLK
                     ETDALPGGERANLRIITQNRLALNQITAVLPDESKVVMSSLRQFSGTRPLYTLADDGL
                     LTNNQSGVKYRPNNDSGYYQSINADGSWGDEKLSPGYTVTIGAKNFTRVFTDEGIQKP
                     FFAIFVWTVVFSVLTVVLTVAVGMVLACLVQWEALKGKAIYRVLLILPYAVPSFISIL
                     IFKGLFNQSFGEINMMLSALFGIKPAWFSDPNTARAMVIIVNTWLGYPYMMILCMGLL
                     KAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNG
                     GPDRLGTTTPAGYTDLLVSYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAIVNLKA
                     TRMKFD"
     gene            complement(7195..8385)
                     /gene="malE"
                     /locus_tag="OQP62_000657"
     CDS             complement(7195..8385)
                     /gene="malE"
                     /locus_tag="OQP62_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000695396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter
                     substrate-binding protein MalE"
                     /protein_id="HCS1720290.1"
                     /translation="MKIKTGVGILALSALTTMMISAPALAKIEEGKLVIWINGDKGYN
                     GLAEVGKKFEQDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL
                     AEVTPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLVPNPPKTWEEIPA
                     LDKELKAKGKSAIMFNLQEPYFTWPLIAADGGYAFKFENGKYDVKDVGVDNAGAKAGL
                     TFLIDMIKNKNMSADTDYSIAEAAFNKGETAMTINGPWAWSNIDKSKVNYGVTLLPTF
                     KGKPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDQGLEAVNKDKPLGAVALKSFQ
                     EQLAKDPRIAATMDNAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALKDAQS
                     RITK"
     gene            8747..9856
                     /gene="malK"
                     /locus_tag="OQP62_000658"
     CDS             8747..9856
                     /gene="malK"
                     /locus_tag="OQP62_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011915502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter ATP-binding
                     protein MalK"
                     /protein_id="HCS1720291.1"
                     /translation="MASVQLRNVTKAWGDVVVSKDINLDIHDGEFVVFVGPSGCGKST
                     LLRMIAGLETITSGDLFIGETRMNDIPPAERGVGMVFQSYALYPHLSVAENMSFGLKL
                     AGAKKEVMNQRVNQVAEVLQLAHLLERKPKALSGGQRQRVAIGRTLVAEPRVFLLDEP
                     LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP
                     LELYHYPADRFVAGFIGSPKMNFLPVKVTATAIEQVQVELPNRQQIWLPVESRGVQVG
                     ANMSLGIRPEHLLPSDIADVTLEGEVQVVEQLGHETQIHIQIPAIRQNLVYRQNDVVL
                     VEEGATFAIGLPPERCHLFREDGSACRRLHQEPGV"
     gene            9946..11304
                     /locus_tag="OQP62_000659"
     CDS             9946..11304
                     /locus_tag="OQP62_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltoporin"
                     /protein_id="HCS1720292.1"
                     /translation="MMITLRKLPLAVAVAAGVMSAQAMAVDFHGYARSGIGWTGSGGE
                     QQCFQVTGAQSKYRLGNECETYAELKLGQEVWKEGDKSFYFDTNVAYSVNQQNDWEST
                     DPAFREANVQGKNLIEWLPGSTIWAGKRFYQRHDVHMIDFYYWDISGPGAGIENIDLG
                     FGKLSLAATRSTEAGGSYTFSSQNIYDEVKDTANDVFDVRLAGLQTNPDGVLELGVDY
                     GRANTTDGYKLADGASKDGWMFTAEHTQSMLKGYNKFVVQYATDAMTTQGKGQARGSD
                     GSSSFTEELPDGTKINYANKVINNNGDMWRILDHGAISLGDKWDLMYVGMYQNIDWDN
                     NLGTEWWTVGVRPMYKWTPIMSTLLEVGYDNVKSQQTGDRNNQYKITLAQQWQAGDSI
                     WSRPAIRIFATYAKWDEKWGYIKDGDNISRYAAATNSGISTNSRGDSDEWTFGAQMEI
                     WW"
     gene            11468..12385
                     /gene="malM"
                     /locus_tag="OQP62_000660"
     CDS             11468..12385
                     /gene="malM"
                     /locus_tag="OQP62_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose operon protein MalM"
                     /protein_id="HCS1720293.1"
                     /translation="MKMKKSLVALCLTAGLFASVPGISLAEVNYVPQNTSAAPAIPAA
                     ALQQLTWTPVDQSKTQSTQLATGGQRLDVAGITGPVAAYSVPANIGELTLTLTSEVNK
                     QASVFAPNVLILDQNMTPSAFFPSSYFTYQQPGVMSADRLEGVMRLTPALGQQKLYVL
                     VFTTEKDLQQTTTLLDPAKAYAKGVGNSIPDIPDPVARHTTDGVVKLKVKTNSSSSVL
                     VGPLFGSSGTGPVTVGNTAAPVAAPAPVAPKKSEPMLNDTESYFNKAIKDAVAKGDVD
                     KALKLLDEAERLGSTSARSTFISSVKGKG"
     gene            12566..13063
                     /gene="ubiC"
                     /locus_tag="OQP62_000661"
     CDS             12566..13063
                     /gene="ubiC"
                     /locus_tag="OQP62_000661"
                     /EC_number="4.1.3.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HCS1720294.1"
                     /translation="MSHPALTQLRALRYFDAIPALEPHLLDWLLLEDSVTKRFEQQGK
                     RVSVTLIREAFVGQSEVEEASGLLPSESRYWLREILLCADGEPWLAGRTVVPESTLCG
                     PEQVLQHLGKTPLGRYLFTSSTLTRDFIEIGRDATLWGRRSRLRLSGKPLLLTELFLP
                     ASPLY"
     gene            13077..13949
                     /gene="ubiA"
                     /locus_tag="OQP62_000662"
     CDS             13077..13949
                     /gene="ubiA"
                     /locus_tag="OQP62_000662"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HCS1720295.1"
                     /translation="MEWSLTQSKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGMP
                     QLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVV
                     LVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAA
                     VSESLPLSCWLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFGRYDTLIIGIL
                     QLGVMALMALIGWLNGLGWGYYWAVLVAGALFVYQQKLIANREREACFKAFMNNNYVG
                     LVLFLGLAMSYWHF"
     gene            complement(14048..16468)
                     /gene="plsB"
                     /locus_tag="OQP62_000663"
     CDS             complement(14048..16468)
                     /gene="plsB"
                     /locus_tag="OQP62_000663"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HCS1720296.1"
                     /translation="MSGWPRIYYKLLNLPLSILVKSKSIPAEPAQELGLDTSRPIMYV
                     LPYNSKADLLTLRAQCLAHDLPDPLEPLEIDGALLPRYVFIHGGPRVFTYYTPKEESV
                     KLFHDYLDLHRSNPALDVQMVPVSVMFGRAPGREKGEENPPLRMLNGVQKFFAISWLG
                     RDSFVRFSPSVSLRRMADEHGTDKIIAQKLARVARMHFARQRLAAVGPRLPARQDLFN
                     KLLASKAIARAVEDEARSKKISHEKAQQNAIALMEEIAANFSYEMIRLTDRILGFTWN
                     RLYQGINVHNAERVRQLAHDGHEIVYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGIN
                     LNFWPAGPIFRRLGAFFIRRTFKGNKLYSTVFREYLGELFSRGYSVEYFVEGGRSRTG
                     RLLDPKTGTLSMTIQAMLRGGTRPITLVPIYIGYEHVMEVGTYAKELRGATKEKESLP
                     QMLKGLSKLRNLGQGYVNFGEPMPLMTYLNQHVPEWRESIDPIEAIRPAWLTPTVNSI
                     AADLMVRINNAGAANAMNLCCTALLASRQRSLTREQLTEQLDCYLDLMRNVPYSTDST
                     VPAASAGELIAHALQMNKFEVEKDTIGDIIILPREQAVLMTYYRNNIAHMLIMPSLMA
                     AIITQHRRISRDALQQHVEALYPMLKAELFLRWEREELASVIDALASEMQRQGLITLQ
                     DDELHINPTHSRTLQLLAAGARETLQRYAITFWLLSANPSINRSTLEKESRTVAQRLS
                     VLHGINAPEFFDKAVFSSLVLTLRDEGYISDTGDAEPAETMKIYQMLADLITSDVRLT
                     IESATQGE"
     gene            16639..17007
                     /locus_tag="OQP62_000664"
     CDS             16639..17007
                     /locus_tag="OQP62_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HCS1720297.1"
                     /translation="MANNTTGFTRIIKAAGYSWKGFRAAWTHEAAFRQESLAVLLGVI
                     IACWLDVDAITRVLLIGSVLLIMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAV
                     LLSIFVALMTWGILLWSHFR"
     gene            17116..17724
                     /gene="lexA"
                     /locus_tag="OQP62_000665"
     CDS             17116..17724
                     /gene="lexA"
                     /locus_tag="OQP62_000665"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000646075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repressor LexA"
                     /protein_id="HCS1720298.1"
                     /translation="MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAE
                     EHLKALARKGVLEIVSGASRGIRLLQEEEDGLPLVGRVAAGEPLLAQQHIEGHYQVDP
                     SLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKK
                     QGNKVELLPENSEFTPIVVDLREQSFTIEGLAVGVIRNGEWL"
     gene            17903..19228
                     /gene="dinF"
                     /locus_tag="OQP62_000666"
     CDS             17903..19228
                     /gene="dinF"
                     /locus_tag="OQP62_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter DinF"
                     /protein_id="HCS1720299.1"
                     /translation="MPLFTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVF
                     LGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQALARALIQPLLLALGAGVM
                     IVLFRTPLIELALHIVGGNDAVLVQARRFLEIRWLSAPASLANLVLLGWLLGVQYARA
                     PVILLVVGNILKIALDLWLVMGLHMNVQGAALATVIAEYVTLLIGLMMVRKVLHLRGV
                     SLDMLKQAWRGNVRRLLALNRDIMLRSLLLQLCFGAITVSGARLGSDIIAVNAVLMTL
                     LTFTAYALDGFAYAVEAHSGQAYGARDGSKLLDVWRAACRQSGIVALLFSTVYALAGE
                     HIVALLTSLPQIQLLADRYLIWQVVLPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAG
                     GFALTLFALPVLGNHGLWLALTVFLALRGLSLSLIWRRHWREGTWFARS"
     gene            19225..19338
                     /locus_tag="OQP62_000667"
     CDS             19225..19338
                     /locus_tag="OQP62_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720300.1"
                     /translation="MMVKNSEYKTEGRIPAYNYYHVQQKLQCIWANNTCYS"
     gene            19360..19569
                     /locus_tag="OQP62_000668"
     CDS             19360..19569
                     /locus_tag="OQP62_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HCS1720301.1"
                     /translation="MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQ
                     ERYGYQKDQAEKEVVDWETRNNYRW"
     gene            complement(19669..20184)
                     /gene="zur"
                     /locus_tag="OQP62_000669"
     CDS             complement(19669..20184)
                     /gene="zur"
                     /locus_tag="OQP62_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc uptake transcriptional repressor Zur"
                     /protein_id="HCS1720302.1"
                     /translation="MEKTTTQELLAQAEKLCAQRNVRLTPQRLEVLRLMSLQQGAISA
                     YDLLDLLRETEPQAKPPTIYRALDFLLEQGFVHKVESTNSYVVCHLFDQPTHSSAMFI
                     CDRCGVVKEECAEGVEDIMHTLAAKMGFALRHNVIEAHGLCPACVEVEACRHPGDCGH
                     DHSVLVKKKPR"
     gene            20431..21741
                     /locus_tag="OQP62_000670"
     CDS             20431..21741
                     /locus_tag="OQP62_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HCS1720303.1"
                     /translation="MNKNVKLSLIAIAVSLFMTKQAGAANTWTEARNDAMGGTGVASA
                     NYGSGVLLNPALLAKAKPEDNITVVLPAVGVQITDKDNLQDEIDDISDKVDYYDEVVD
                     NLTLGQILLNPRGVLNQFQGAARDLADELEYLNGKTARANAGAGLAVSIPGQTLSVAF
                     IAKGYAHGRVSSSIDQNDIQYLRDIQHDERVALREAGRAALLGSDEITKHLNSTALGR
                     VAIVSDYGIALAKQFVVGEVPVSIGVTPKLQKTWLYNYTTSIYNYDSSDWNSSRYRND
                     DTGFNIDAGLAADIGENWTLGLSGQNLVSRDIDTKDIYITNGMTGETTNYKETYQIRP
                     LVTAGIAWHNDLLTVSADGDLTETKGFKSEDNSQYVGVGAEVRPLSWLAVRAGYRADV
                     KNNDSNVVTGGLGFAPFNRAHLDLMGLYGEDETWGAGAQLTMTF"
     gene            21829..22827
                     /gene="dusA"
                     /locus_tag="OQP62_000671"
     CDS             21829..22827
                     /gene="dusA"
                     /locus_tag="OQP62_000671"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HCS1720304.1"
                     /translation="MQPETQSSALPAYRFSIAPMLDWTDRHCRYFLRLLSRQTLLYTE
                     MVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCP
                     SDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINT
                     VSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKS
                     LEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDTDPVAVVRAMYPYIERE
                     LSQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADAAVLEQALKLIADKR"
     gene            22995..23237
                     /gene="pspG"
                     /locus_tag="OQP62_000672"
     CDS             22995..23237
                     /gene="pspG"
                     /locus_tag="OQP62_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response protein PspG"
                     /protein_id="HCS1720305.1"
                     /translation="MLELLFVLGFFLMLMVTGVSLLGILAALVVATAVMFLGGMFALM
                     IKLLPWLLLAVAVVWVIKAVKTPKIPQYQRNNRRFY"
     gene            complement(23412..24395)
                     /locus_tag="OQP62_000673"
     CDS             complement(23412..24395)
                     /locus_tag="OQP62_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone oxidoreductase"
                     /protein_id="HCS1720306.1"
                     /translation="MATRIEFHKHGGPEVLQTVEFTPTEPAEHEIQVENKAIGINFID
                     TYIRSGLYPPPSLPAGLGTEAAGVVSKVGSGVEHIRVGDRVVYAQSTLGAYSSVHNVP
                     ADKAAILPDAISFEQAAASFLKGLTVFYLLRKTYEVKPDEPFLFHAAAGGVGLIACQW
                     AKALGAKLIGTVGSAQKAQRALDAGAWQVINYREESIVERVKEITGGKKVRVVYDSVG
                     KDTWEASLDCLQRRGLMVSFGNASGPVTGVNLGILNQKGSLYATRPSLQGYITTREEL
                     TEASNELFSLIASGVIKVDVAENQRYALKDARRAHEVLESRATQGSSLLIP"
     gene            24460..25875
                     /gene="dnaB"
                     /locus_tag="OQP62_000674"
     CDS             24460..25875
                     /gene="dnaB"
                     /locus_tag="OQP62_000674"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HCS1720307.1"
                     /translation="MAGNKPFNKPQTDARDRDPQVAGIKVPPHSIEAEQSVLGGLMLD
                     NERWDDVAERVVAEDFYTRPHRHIFTEMGRLQESGSPIDLITLAESLERQGQLDSVGG
                     FAYLAELSKNTPSAANISAYADIVRERAVVRDMIAVAHEIADAGYDPQGRNSDELLDL
                     AESRVFQIAENRANKDEGPKSIDQILDATVARIEQLFQQPHDGVTGVDTGYQDLNKKT
                     AGLQRSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASL
                     SRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREH
                     GGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQR
                     ADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVR
                     LTFNGQWSRFDNYAGPQYDDE"
     gene            25907..26986
                     /gene="alr"
                     /locus_tag="OQP62_000675"
     CDS             25907..26986
                     /gene="alr"
                     /locus_tag="OQP62_000675"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HCS1720308.1"
                     /translation="MQAATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLE
                     TARTLPDADAFGVARLEEALRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQ
                     EQLAALEAVELAEPVTVWMKLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHF
                     ARADEPECGATEHQLDIFNAFCQGKPGQRSIAASGGILLWPQSHFDWARPGIILYGVS
                     PLEHKPWGPDFGFQPVMSLTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGD
                     GYPRAAPSGTPVLVNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERI
                     AEMTKVSAYELITRLTSRVAMKYID"
     gene            27172..28365
                     /gene="tyrB"
                     /locus_tag="OQP62_000676"
     CDS             27172..28365
                     /gene="tyrB"
                     /locus_tag="OQP62_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transaminase"
                     /protein_id="HCS1720309.1"
                     /translation="MFQKVDAYAGDPILSLMERFKDDSRHDKVNLSIGLYYNEDGIIP
                     QLKTVAEAEARLNAQPHGASLYLPMEGLNTYRHTIAPLLFGADHPVLQQQRVATIQTL
                     GGSGALKVGADFLKRYFPDAGVWVSDPTWENHIAIFAGAGFEVSTYPWYDDATNGIRF
                     NDLLATLNTLPARSIVLLHPCCHNPTGADLTPSQWDAVIEIVKARDLIPFLDIAYQGF
                     GAGMDEDAYAIRAIASAGLPALVSNSFSKIFSLYGECVGGLSVVCEDAEIAARVLGQL
                     KATVRRIYSSPPCFGAQVVATVLGDEALKASWLAEVDAMRTRIISMRQTLVKELKAEM
                     PDRNFDYLLQQRGMFSYTGLSAEQVDRLRDEFGVYLIASGRMCVAGLNASNVHRVAKA
                     FAAVM"
     gene            28552..29265
                     /gene="aphA"
                     /locus_tag="OQP62_000677"
     CDS             28552..29265
                     /gene="aphA"
                     /locus_tag="OQP62_000677"
                     /EC_number="3.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid phosphatase AphA"
                     /protein_id="HCS1720310.1"
                     /translation="MKKITLALSAVCLLFTLNHSANALVSSPSTLNPGTNVAKLAEQA
                     PVHWVSVAQIENSLTGRPPMAVGFDIDDTVLFSSPGFWRGKKTYSPDSDDYLKNPAFW
                     EKMNNGWDEFSIPKEVARQLIDMHVRRGDSIYFVTGRSQTKTETVSKTLADNFHIPAA
                     NMNPVIFAGDKPGQNTKVQWLQEKNMRIFYGDSDNDITAARDCGIRGIRILRAANSTY
                     KPLPQAGAFGEEVIVNSEY"
     gene            29394..29810
                     /locus_tag="OQP62_000678"
     CDS             29394..29810
                     /locus_tag="OQP62_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbQ family protein"
                     /protein_id="HCS1720311.1"
                     /translation="MWYQRTITLSEKPRGFHLITDEITDKLSGLPPVETGLLHLLLLH
                     TSASLTLNENCDPTVRADMERHFLKTVPDNAAYEHDYEGADDMPSHIKSSVLGVSLLL
                     PVRQGRLQLGTWQGIWLGEHRIHGGPRKIIATLQGE"
     gene            29813..30169
                     /locus_tag="OQP62_000679"
     CDS             29813..30169
                     /locus_tag="OQP62_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HCS1720312.1"
                     /translation="MTISELLQYCMAKPGAEQSVHSDWKATQIKVEDVLFAMVKEVDG
                     RPAASLKTSPELAELLRQQHSDVRSSRHLNKAHWSTVYLDGSLPDSQLYYLVDASYQQ
                     AVNALSEDKRKQLPQS"
     gene            complement(30170..30508)
                     /locus_tag="OQP62_000680"
     CDS             complement(30170..30508)
                     /locus_tag="OQP62_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720313.1"
                     /translation="MASINEIRNLFTAARAEHPVASSAIAEFIQTYKQAREDSDDGIR
                     ESAAFIARALQEHARGWLDDDDMIILLEGQRDLARLRANNAQIALGSRIRSTVIHLID
                     IALALLVGAL"
     gene            complement(30495..30950)
                     /locus_tag="OQP62_000681"
     CDS             complement(30495..30950)
                     /locus_tag="OQP62_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720314.1"
                     /translation="MENTMKLPYAITLLLCLFLAACTLPDRFSAVAFQQLTLLQARST
                     RFLQDAARIPWQKETLLKDDRDIRQTFFQAERVARQGGDKHRLDNLALLKNHYLRLYA
                     RVMKCKQPLTYIQAERYQQQNNQVWKLAIQGECLHWGARCTQGEENGVY"
     gene            complement(31082..33907)
                     /gene="uvrA"
                     /locus_tag="OQP62_000682"
     CDS             complement(31082..33907)
                     /gene="uvrA"
                     /locus_tag="OQP62_000682"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HCS1720315.1"
                     /translation="MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTIT
                     EIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKG
                     EHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVIDRFKVRNDLSQRLA
                     ESFETALELSGGTAVVADMDDEKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGA
                     CPTCDGLGVQQYFDPDRVIQNPDLSLAGGAIRGWDRRNFYYFQMLKSLAEHYKFDVDA
                     PWASLSANVHKVVLYGSGKENIEFKYMNDRGDTSVRRHPFEGVLHNMERRYKETESSA
                     VREELAKFISNRPCASCEGTRLNREARHVFVENTPLPAISDMSIGHAMDFFTNLKLSG
                     QRAKIAEKVLKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGV
                     MYVLDEPSIGLHQRDNERLLGTLIHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGV
                     HGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEVPKQRVPANPEKVLKLTGARGNNLK
                     DVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHF
                     DKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRSRGYTPGRFSFNVRGGRC
                     EACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEARE
                     FFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYIL
                     DEPTTGLHFADIQQLLDVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGE
                     ILVAGTPETVAECEASHTARFLKPMLK"
     gene            34155..34685
                     /gene="ssb1"
                     /locus_tag="OQP62_000683"
     CDS             34155..34685
                     /gene="ssb1"
                     /locus_tag="OQP62_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein SSB1"
                     /protein_id="HCS1720316.1"
                     /translation="MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDK
                     QTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLRTRKWTDQSGQERYTTEI
                     NVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
                     APSNEPPMDFDDDIPF"
BASE COUNT         7943 a         9069 c         9796 g         8231 t
ORIGIN      
        1 attatcctaa aacctcgctg ttatttctcc cggacataat ccgcctgctt tggttgtgta
       61 tactcggtag cgcccgaaat tcttttgggt aaatctccat tcattcaatg aagggaaatt
      121 atgatgaaaa aagtactgta tggcattttt gccataaccg cgcttgcggc gacatctgtc
      181 tcggcagccc ccgttcaggt gggtgaagcg gcagggtcgg cagcgacgtc ggtatcggcg
      241 ggaagctcct ccgctaccag cgttagcacc gtaagttcgg cggtgggcgt cgcgttagcg
      301 gcaaccggcg gcggcgatgg ttccaatacc ggaaccacga ccaccacgac caccagtacc
      361 cagtagtatc ggtacgttta accataacca cactccggtg tggttatttt gcccctctgg
      421 agaagcgtcg tgaagcgact cgcacttatc ctgatttgcc tgctattaca ggcgtgttcg
      481 gccaccacca aaggcctggg cgattcactg tgggacagtt tgttcggtac gccaggcgta
      541 cagctaacgg atgacgatat tcaaaacatg ccttatgcca gccagtacat gcagcttaac
      601 ggcggtcctc aactgtttgt ggtgctcgct ttctcggaaa acgggcagca gaaatgggtg
      661 acgcaggatg gcgcgacgat cgtgacgcag catggccgtc tggtcaaaac gctgctcggc
      721 ggcgacaacc tgatcgatgt gaataatctg gcgaccgacc cgctggcgaa accaggacag
      781 attatcgatg gcgcgacctg gactcgcacc ctgggctgga ccgaacatcg ccaggtgcgt
      841 tacgccaccg cccgttccgt ttttacatgg cgagggaccg atagagtgaa cgtcggcagt
      901 gaggaaaccg ccgtgcgggt gttagatgaa gaagtgacga ccgatcaaac gcgctggcgt
      961 aatcgctact gggttgatag cgaaggccaa attcgccaga cggaacagta tctgggcgcg
     1021 aattactttc cggtgaaaac cacgctgatt aaggcggcaa aatcatgatg aaaaggacga
     1081 taagcgcgct ggcgctggcc tttgtcgcgt catccgcctt tgccagcggc actgttaccg
     1141 tttttaccca gggtaatagc gagcctaaaa cgctgacaga cgctgagcgt ctgctcgatt
     1201 tagtcggaca gccgcgcctg gcaacgagct ggtggcctgc ggcggtgata ggcgaagaac
     1261 aggcgaccgt gacggcgcgt cagcagcagc aggaacttct cgggcgactg gcggcgctca
     1321 gcgctgagga agatggcgat gcggcggcga taaacacact acgccgacag attcaggcgg
     1381 tgaaggtgac gggcagacaa ttcgtgaatc ttgatcctga cgtggtgcgg gtgagcgaac
     1441 gaggtaaccc gccgctgcaa ggtcactaca cgctctgggt cgggccgcaa cccacgcagg
     1501 tgacgctctt tggcttgatt agccagccgg gcagccagcc gttcgtccct gggcgggacg
     1561 tcgccagtta tcttgagggg cagcgcttac tcagcggcgc ggatcgtagc tatgcctggg
     1621 tggtttaccc tgatggacgc agccaaaaag cgccggtggc ttactggaat aaacgtcata
     1681 tcgagccgat gcccggcagc atcatttttg tcggttttgc cgattccctt tggcgcggca
     1741 cgccggaggc gataaatgcc gacattcttc ataccctgac gcagcggata ccggaataat
     1801 gaaaaaaaca catctgctca gcgtgctggc gctgggtatt agcgcggcct gccatgccga
     1861 aacatatcca gcccctgttg ggccttcaca atctgacttt ggcggcgtgg gcctgctgca
     1921 aacgccgaca gcgcgtatgg cgcgtgaagg ggagatgagc ctgaactatc gcgataacga
     1981 tcagtaccgc tactactcgg cttcggttca gcttttcccg tggctggaaa ccacgttgcg
     2041 ctataccgat gtccgtacga aaaagtacag cagcgtggaa tcattctccg gcgaccagac
     2101 ttacaaagat aaagcgtttg atgtgaaact gcggttgtgg gaagagagtt actggatgcc
     2161 gcaggtggcg gttggcgcgc gcgatatcgg cgggacgggg ctgtttgatg cggaatatat
     2221 tgtagcgagt aaggcttggg ggccatttga tttttcatta ggtctcggct ggggctatct
     2281 tggcaccagc ggcaatgtgt ctaatccttt ctgttcgtat agtgataaat tctgttcgcg
     2341 tgataacagc tataaagagg ccggttccgt cgacggtagc gatatgtttc acggcccggc
     2401 ttcgctgttt ggcggcgtgg aataccagac cccgtggcaa ccgctacgcc tgaagctgga
     2461 gtatgaaggc aataactatc agcaggattt tgcggggaaa ctggaacaga agagcaagtt
     2521 taacgtcggc gccatttact gcgtcaccga ttgggccgac gttaacctca gctacgagcg
     2581 cggcaacacc tttatgtttg gcgttacgct gcgcaccaat ttcaacgatt tacgtcccgc
     2641 gtatcatgac aattcacgcc cgcaataccg accacagccg caggatgcca tcctgcaaca
     2701 ttcggtagtg gctaatcaat taacgttatt gaaatataat gccggtctgg cggacccgaa
     2761 aatccaggtc aaaggcgata cgctatacgt taccggtgaa caggtgaagt accgcgactc
     2821 ccgtgagggg atcgtgcgcg ctaaccggat cgtcatgaac gatctgccgg aggggatccg
     2881 cacgatccgc gtgacggaaa accgccttaa tctgccgcag gtcaccactg aaaccgatgt
     2941 cgccagcctg aaacgccatc tggaaggcga accgctggga catgaaactc cgctggcgca
     3001 aaaacgcgtg gagccgatcg tgccagagag tactgaacag ggttggtata tcgacaagtc
     3061 gcgcattgat tttcatcttg atcccgtgct gaatcagtcg gtaggcggcc cggaaaactt
     3121 ctatatgtat cagttgggcg taatgggaac tgcggatctg tgggtcacgg atcatctgct
     3181 caccacgggc agcgtgtttg ccaatatcgc caacaactac gacaaattta actacaccaa
     3241 tccaccgaag gactcgcatc tgccgcgggt gcgtacgcat gtccgtgagt atgtgcagaa
     3301 tgatgtttat gtgaataacc tacaggccaa ctacttccag tattttggca atggtttcta
     3361 tgggcaggtc tatggcggtt atctggagac catgtttggc ggtgccgggg cggaagtcct
     3421 gtatcgcccg gtagacagca attgggcgtt tggtctggat gccaactacg tgaaacagcg
     3481 tgactggcgt agcgcgcagg atatgatgaa gtttaccgat tacagcgtga agaccggaca
     3541 tttgaccgca tactggacgc cgtcgttcgc ccaggatgtg ctggtgaaag ccagcgttgg
     3601 tcagtatctg gcgggcgata aaggcggtac gctggagatc gccaaacgct tcgatagcgg
     3661 cgtcgttgtc ggcggttacg cgacgattac cgatgcgtcg ccggatgaat atggggaagg
     3721 ggattttacc aaaggcgtat atgtttccgt accgctggat ctcttctcgt ccggcccaac
     3781 ccgaagtcgt gcggcaattg gctggacgcc gctgacgcgt gacggtggtc aacagcttgg
     3841 ccgtaagttt ggcctgtatg atatgaccag tgacaggagc gtaaatttcc gttaatactc
     3901 aggccggata aggcgttcac ggcgctatcc ggcaaattac cttattgaac aaaatataaa
     3961 cacaaataaa aaatatagat gcccgtcaca tttgtgcgtt atacagaaac ctcgccgcag
     4021 agaaagaggg ggctgttatg atgccattat cgcgctcacg tcttgagttt atcgccacga
     4081 ttttacaaaa cgtactaaat ttggggctgc ttaccctcgg tctgatcctg gtcgtttttc
     4141 tcggtaaaga gacggtgcat ctggcggacg cattattcgc gcctgagcaa gccagcaaat
     4201 atgaactggt ggaagggctg gtgatctact ttctttattt cgaatttatt gcgctgattg
     4261 tgaagtactt taagtctggc cttcactttc cgctgcgcta tttcgtgtac attgggatca
     4321 cggcgattgt gcgtctgatc attgtcgatc ataaaacgcc aatggatgta ttactctatt
     4381 cggcggcgat cctcctgttg gttatcacgt tgtggttatg taattcgaac cgactacggc
     4441 gagaataggc gtcgccacac cgtaacggac gtatggcgtg gcaataaatt agccgctgtc
     4501 tataacgcat aaaaaaagcg ctccgaagag cgccaaaata cgaccataag tggggataac
     4561 ataacttgag ggcagtggca ttgcccgttg ccgggcaggt acttcgataa aacttaacct
     4621 ttcacacccc ctgccgtcag gccgttgacc agccaacgtt gcgccaacag gaacaccagg
     4681 gtgataggaa tagctgaaag gacggcggcg gcggcaaagt cgccccacaa atagttttgc
     4741 gggttgagat attgctgcat acccacggcc agcgtatagc tgtccacatc gcgcagtaac
     4801 aacgaggcga ccggaacttc ggtaatcgcc gcgatgaacg acagaataaa caccaccgcc
     4861 agaatcggta cggaaagcgg cagcagcacc agacgaaatg cctgccacgg ggttgcgcca
     4921 tccagcgcgg cggcctcttc cagcgagctg tcgatagttt cgaagtagcc tttaattgtc
     4981 cagacgtgca gcgcgatgcc gccaagatag gcgaagatca cgccgccatg cgtattcaga
     5041 ccgataaatg gaatgtattg tcccaggcgg tcaaataacg catacagcgc caccagagac
     5101 aaaaccgccg gaaacatctg gaaaatcagc atccctttga gcagtgttgc tttacctgga
     5161 aaacgcattc gtgcgaaagc gtaggcgcag gtggtggaga gcgccacgat gccgatggcg
     5221 gtaataccgg cgattttcac cgagttccac agccacagca ggaccgggaa gggaggcggc
     5281 gttacccgac catccgcatg ttccacgctg aaacccagcg ccagccgcca gtgttcccag
     5341 gagattttat ccgggatcag gcttccggtg gcgaagttcc cttcacgtag cgagatagcg
     5401 atgaccatca gcagcgggaa cataatcgcc gcgatgaaaa tcagcagccc caggtgcgtg
     5461 atgaagagac gcagtttctg agatttgggt tggaccatag ccattgttat tatctccctt
     5521 aatcaaactt catacgcgtg gctttcaggt tcactattgc cagcgcgcct accagcagga
     5581 agatcagcgt ggcaatggcc gccgccagac cgaagtcctg accgccgccg ccttcaaagg
     5641 cgatacggta ggtgtagctg acgagcagat cggtataacc ggcaggcgtg gtggtgccga
     5701 gacggtctgg cccgccgttg gtcaataact gaatcaggac aaagttatta aagttaaagg
     5761 cgaagctggc gatcatcagc ggcgttagcg gcttaatcag cagcggtaag gtgattttaa
     5821 agaaattctg aaatggacca gcgccgtcca ttgcggaggc ttcgtacagg tcatccggaa
     5881 tcgctttcag cagtcccatg cacaggatca tcatgtaggg atagcccagc caggtattca
     5941 cgataatcac cattgcccgc gcggtgttgg ggtcgctgaa ccaggcaggt ttaatgccaa
     6001 acagcgcgct cagcatcata ttgatttcgc caaagctttg gttgaataac cctttgaaaa
     6061 tcaaaattga aataaacgac ggtacggcgt agggcagaat cagcaggacg cggtagatag
     6121 ctttaccttt cagcgcttcc cactgtacga ggcaggccaa taccatccca accgccacgg
     6181 ttaacaccac agtgaggacc gaaaagacca cggtccagac gaagatagcg aaaaaaggct
     6241 tctggatccc ttcgtcggta aagacgcgcg taaagttttt cgcgccgata gtaacggtat
     6301 aaccaggact gagtttttca tcaccccagc ttccgtcggc gttgatcgac tgataataac
     6361 cgctatcgtt gtttggccgg tattttacgc cgctctggtt attggtaagc aggccgtcat
     6421 cagccagtgt gtacagcgga cgggtaccgg aaaactgacg cagcgagctc ataaccactt
     6481 tactttcatc cggcaggacg gcggttatct ggttcagcgc cagacggttc tgggtgatta
     6541 tccgcagatt ggcgcgttcg ccgcccggca gggcatcggt ctctttcagc tgtaattttt
     6601 gttcgccgcc gaaggaaaat gcgccagaca ggtaatgttt gcccgtttct ccgtcggtga
     6661 gggccagttg ccactcgtcg ccggccgggt aaagaccgaa gttataggtt tttcccgcct
     6721 gataagaacg gtccatcagc acttgctggg cgcgttcaaa ggtgagctgg ttggtgctgc
     6781 tgtagttagt aaaggcgatg gcgatggtgc acaccagcgg gaatagcaca aacagcccca
     6841 tgccggcgag gccagggtaa acgtagcgcc aggcataggt tttacgattt gcgaaaatat
     6901 acaggccagc agagcttaaa atcagcgtca tgatggcgaa cagatactcc ccttgtacgt
     6961 acattaaaac tacaaggtaa cccaccagca ggcccagcag accaattact gaccatttaa
     7021 gctggtcgct ttgccaccag tgtttctttt taatgacatc catgggggtt ttcctctaca
     7081 gcgttgaaac ttcctggccg gagatgtgcc tgatggcgct gcgcttatca ggcctacggt
     7141 gtgttgtagg ccggataagg catttatgcc gccatccggc acaggctcgc ggcattactt
     7201 ggtgatacgg ctttgtgcat ctttcagcgc ggcatccacg gtttgacggc cgctggcggc
     7261 gttaatcaca gccgtacgta ccgcatacca gaaggcggac atctgcggaa tattcggcat
     7321 gatctcgcct ttctgggcgt tatccatggt ggcggcgata cgggggtctt tcgctaactg
     7381 ctcctggaaa gatttcagcg ccacggcgcc cagcggtttg tctttgttca ccgcctccag
     7441 accctgatcg gtcagcaggt agttttcgag gaactctttc gccagctctt tattcgggct
     7501 ggcagcgtta atccccgcgc tcagcacgcc gacgaacggt ttcgagggtt tacctttgaa
     7561 ggtcggcagc agggtgacac cgtagttgac tttgctcttg tcgatgttcg accatgccca
     7621 cggaccgttg atggtcattg ccgtttcgcc tttattgaag gctgcttcgg cgatggagta
     7681 atcggtatcg gcgctcatat ttttgttctt gatcatatcg atcaggaaag tcagacctgc
     7741 tttcgcgccg gcgttgtcga cgccaacgtc tttcacgtca tacttgccgt tttcaaattt
     7801 gaacgcgtaa ccgccgtcag cggcgatcaa aggccaggtg aaatacggct cttgcaggtt
     7861 gaacattatc gccgacttcc ctttcgcttt tagctcttta tccagcgccg ggatctcttc
     7921 ccaggttttc ggcgggttcg ggacgaggtc tttgttataa atcagggaga gggcttcaac
     7981 ggcgatgggg taggcgatca gcttgccgtt ataacgtacc gcatcccagg taaacggata
     8041 gagtttgtcc tgaaacgctt tatccggagt aacctccgcc agcagaccag actgcgcgta
     8101 gccgccaaaa cggtcgtgcg cccagaagat aatgtcagga ccgtcgccgg tggcagccac
     8161 ctgcgggaat ttctcttcca gcttatccgg gtgctcaacg gtcactttaa tgccggtgtc
     8221 ttgctcaaat tttttaccga cctcggccag accgttatag cccttgtcgc cgttgatcca
     8281 gataaccagt ttaccttctt caattttggc gagagccggg gcggaaatca tcatcgtcgt
     8341 aagtgcggat aatgcgagga tgcctacgcc agttttaatc ttcatatctc ccatcctttt
     8401 tggtgatgta cacagaggtg gtttaacggt ctctagtttc tttatacgac aacctctttc
     8461 catcctccct acccctacgc cccaccccgg ctttatgtga tctgtgttgc ataaatgtga
     8521 gtaatgcgtg ctggcgcaca caaaaacacg ccgatttttg cgggcggcat cacgaaattc
     8581 cttttctgtc cgcgcccgtg gtctcaggcg ttgtgtcctc atcctcccgc ctcctccccc
     8641 ataaaaaagc cggggggtgg aggatttacc ccagtcaggg atcgcgcata gtcaggccat
     8701 catgaatgtt gctgtcaatg acaggttgta acgaagggag aagggcatgg cgagcgtaca
     8761 gctacgaaat gtaacgaaag cctggggtga cgtggtggta tcgaaagata ttaacctcga
     8821 tatccatgac ggggagttcg tggtgtttgt cggaccgtca ggctgtggta aatcgacctt
     8881 gctgcgtatg atcgccgggc ttgaaactat caccagtggc gacctgttta tcggggaaac
     8941 ccgtatgaat gatattccgc ctgccgagcg cggcgtgggc atggtattcc agtcttatgc
     9001 gctctatccc catctctccg ttgcagaaaa catgtctttc ggcctcaagc tggcgggcgc
     9061 caaaaaagag gtaatgaatc aacgcgtcaa tcaggtggcg gaagtactgc aactggcgca
     9121 tctgctggaa cgtaagccaa aagcgctttc cggcggtcag cgtcagcgcg tagcgattgg
     9181 ccgcacgctg gtggcggagc cgcgtgtgtt tttgctggat gaaccgctct ctaacctgga
     9241 tgccgcgcta cgcgtgcaga tgcgcattga aatttctcgc ctgcataaac gtctgggccg
     9301 cacgatgatt tacgtcaccc acgatcaggt cgaggcgatg acgctggccg acaaaatcgt
     9361 ggtgctggac gctggtcgcg tcgcgcaggt cggtaagccg ctggagctgt accactatcc
     9421 ggcggaccgc tttgtcgcgg gctttatcgg ctcgccgaag atgaacttcc tgccggtgaa
     9481 agtgaccgcc accgcaattg aacaagtcca ggtcgaactg ccgaatcgcc agcaaatctg
     9541 gctgccggtc gaaagtcgcg gcgtgcaggt cggcgccaat atgtctttag gcattcggcc
     9601 ggaacacctg ctgccgagcg atatcgccga tgtcaccctg gaaggtgaag tccaggtggt
     9661 cgagcagtta gggcacgaaa cacaaattca tatccagatc cccgccatcc gtcaaaacct
     9721 ggtttatcgc cagaatgacg tggtgctggt agaagagggc gccacattcg ctatcggcct
     9781 gccgccagag cgctgtcatc tgttccgcga ggatggcagc gcatgtcgtc gtctgcatca
     9841 agagccgggt gtttaaggcc tccataaaaa aacgaaacgc aaaaccattc gcagttttag
     9901 aaggtggcag cgtttaaaga aaagcaatga tctcaggagt atagaatgat gattactctg
     9961 cgcaaactcc ctctggcggt tgctgtcgca gcgggcgtaa tgtccgctca ggcaatggct
    10021 gtcgatttcc acggttacgc ccgttccggt attggctgga cgggaagcgg cggcgaacaa
    10081 caatgtttcc aggtgaccgg tgcacaaagt aaataccgtc tcggtaacga atgtgaaacc
    10141 tatgcggaac tgaaactggg ccaggaagtg tggaaagagg gcgataagag cttctatttc
    10201 gacaccaacg tcgcctattc ggttaaccag cagaacgact gggaatcgac cgatcccgcc
    10261 ttccgcgaag cgaacgtgca gggtaaaaac ctgattgaat ggctgccggg ctctaccatc
    10321 tgggccggta agcgcttcta tcagcgtcat gacgtacaca tgatcgactt ctactactgg
    10381 gatatttcag gtcctggcgc aggtatcgaa aatatcgatc tgggcttcgg taagctttcg
    10441 ctggcggcga cccggtctac tgaagcgggc ggctcttaca ccttcagcag ccagaatatt
    10501 tatgatgaag taaaagatac cgctaacgac gtctttgacg tacgtctggc tggtctgcaa
    10561 acgaacccgg acggcgtact ggagttgggc gttgactacg gtcgcgccaa tacgaccgat
    10621 ggttataagc tggctgatgg ggcatcgaaa gacggctgga tgttcaccgc cgaacacacg
    10681 caaagcatgt tgaaaggcta taacaagttt gtcgtgcaat atgccaccga tgccatgacc
    10741 acgcagggta aaggccaggc gcgcggttcc gacggttctt catctttcac tgaagaattg
    10801 cctgatggaa ccaaaattaa ttatgccaat aaggtcatca ataataatgg cgatatgtgg
    10861 cgtattttgg atcatggcgc catctcgctt ggtgataaat gggatttgat gtacgtcggt
    10921 atgtaccaga atatcgattg ggataataac ctgggtactg agtggtggac cgtgggcgta
    10981 cgtccaatgt acaagtggac gccaatcatg agtaccctgc tggaagtcgg ctacgacaac
    11041 gtgaaatctc agcagaccgg cgatcgtaac aatcaatata aaatcaccct ggcgcaacag
    11101 tggcaggcgg gcgacagcat ctggtcgcgt ccggctatcc gtattttcgc cacctacgcg
    11161 aaatgggatg agaaatgggg ctatatcaaa gacggcgata acatttcccg ttatgccgca
    11221 gcgactaact ccggcatttc caccaacagc cgtggcgata gcgatgagtg gaccttcggc
    11281 gcccagatgg aaatctggtg gtaatacgat ggtcatctga cgtaacgagg ggcgcaagcc
    11341 cctctgaaac atcaggtctg atgatgcttg taagccgaat aaggcgccag ccgccattcg
    11401 gcgatatgtt tgggttggcg cgctattgcc tggctaccgc tgaacccgcc ttattgaggt
    11461 gagaataatg aaaatgaaga aaagtctcgt cgccctctgt ttaaccgcag ggctgttcgc
    11521 cagcgtgccg ggtatcagcc tggcggaagt gaactatgta ccgcaaaata ccagtgccgc
    11581 gcccgctatt cctgctgctg cgctacagca attaacctgg acgcctgtag atcagtcaaa
    11641 aacgcagtct acccaactgg cgacgggcgg ccagcgcctt gacgtcgccg gcattaccgg
    11701 cccggtcgcc gcttatagcg ttccggcgaa tatcggcgag ctgacattaa ctctgaccag
    11761 cgaggtcaat aagcaagcca gcgtttttgc gccaaacgtg ttgattcttg accaaaatat
    11821 gacgccttcg gcgttcttcc ccagcagtta ctttacttat cagcagccgg gcgtcatgag
    11881 cgcagatcgg ctggaaggcg tgatgcgcct gacgcctgcg ttggggcagc agaaactcta
    11941 tgttctggtg tttacgaccg aaaaagatct tcagcaaact actacgctgc tcgatccggc
    12001 aaaagcctat gccaaaggcg tcggtaactc tatcccggat attcccgatc cagttgctcg
    12061 ccataccact gatggcgtgg tgaaactgaa ggtgaaaacc aacagtagct ccagcgtatt
    12121 ggtcgggccg ttgtttggct cgtccggtac cgggccggta acggtaggca ataccgccgc
    12181 gccggtcgct gcgccagcgc cagtcgcgcc gaagaaaagc gaaccgatgt tgaacgatac
    12241 ggaaagctac tttaataaag cgattaagga tgccgtagcg aaaggcgacg tcgataaagc
    12301 gctgaaactg cttgatgagg ccgaacgtct gggatcgaca tctgcccgtt ccacctttat
    12361 cagcagtgta aaaggcaagg ggtaattgtt tccccacagt gctgattttg cagcaactgg
    12421 tgcgtctcct ggcgcacctt tttttgtcat ttcatgcgaa ttgttatttt tttgttgcgc
    12481 aacagatcac ttaattgtga ttgcgccccc cgtaatgtct tttctgagat acaatgactt
    12541 taggttatga atcggagagt aaggcatgtc acaccctgcg ttaacgcaac tgcgtgcgct
    12601 gcgctatttt gatgcgattc ctgcgcttga accccatttg ctggactggc tgttgctgga
    12661 agattctgtg actaaacgtt ttgagcagca gggaaagcgg gtaagcgtga cgctgattcg
    12721 ggaagcgttt gtcggccaaa gtgaggtcga ggaagcatca ggtttactgc catccgagtc
    12781 ccgctactgg ttacgtgaga tactgctttg cgctgacggc gagccctggc ttgccggacg
    12841 taccgtggta ccggaatcca cgctgtgcgg acctgaacag gtcttacaac atctgggtaa
    12901 aaccccgctt ggacgttatc tatttacatc atcgacactg acccgcgatt ttattgaaat
    12961 tggacgcgat gcaacgctgt gggggcgccg ctctcgactg cggttgagcg gaaaaccgct
    13021 gttgcttacc gagctttttt tacctgcatc gccgctgtac tgagaggaag ataaagatgg
    13081 agtggagtct gacgcagagt aagctgctgg cgtttcaccg tttgatgcgt acagataagc
    13141 ctattggcgc gttgctgctg ctctggccga cgctttgggc gctatgggtg gcgacgccgg
    13201 gtatgcctca gctgtggatt ttggcagttt ttgtcgctgg cgtgtggtta atgcgcgcgg
    13261 cgggctgcgt ggtgaatgat tatgccgatc gtaaatttga cggacatgta aaacgtacgg
    13321 tcaaccgacc tttacccagc ggcgccgtga cagagaaaga agcgcgcaac ctgtttgtgg
    13381 tgctggtgct gctggcgttt ctgttggtgc tgacgctgaa cgccatgacg attctgcttt
    13441 ccgtggcggc gctggcgttg gcctgggttt atccctttat gaaacgctac acccacctgc
    13501 cgcaggtcgt gctgggggcc gctttcggct ggtcaatccc catggcgttc gccgcggtga
    13561 gcgaatccct gccgttgagc tgctggctga tgttcctcgc caatattctc tgggcggtgg
    13621 cttacgatac gcaatatgcg atggtcgaca gagatgatga tatcaagata ggcattaaat
    13681 cgactgcgat cttgtttggt cgttatgaca cattgattat cgggattctg cagcttggcg
    13741 tcatggcgtt aatggcgctg atcggctggt tgaatggtct gggatgggga tattactggg
    13801 ctgtgctggt ggcgggcgcg ctgtttgtct accagcaaaa actgattgcg aaccgtgaac
    13861 gtgaagcctg ctttaaagcc tttatgaaca ataactacgt tggcctggtg ctatttttag
    13921 ggctggcgat gagttactgg cacttctgat gtcatgccgg gcgaacccgg cctacaaagc
    13981 caaaattttc aatacgtcat atcagttgcc cgatgagctt gcactatcgg gcatttcagg
    14041 cactggctta ctcgccctgc gtcgcgcttt caatcgtcag acggacatca gaggtaatta
    14101 gatcggcaag catctgatat atcttcatcg tttctgccgg ttcggcatcg cccgtatcac
    14161 tgatataacc ctcatcccgt agcgtcaaca cgagtgaact gaacaccgct ttgtcgaaaa
    14221 actccggcgc gttaataccg tgcaggacag acagacgttg cgccacggta cggctttctt
    14281 tctccagcgt actgcggttg atggacggat tggcgctcaa tagccagaac gtaatggcat
    14341 aacgctgtag cgtttcacgc gcgcctgccg ccagcagttg cagcgtacgg gaatgcgtcg
    14401 ggttgatatg cagttcatca tcctgcaggg taattagccc ctgacgctgc atttcactgg
    14461 ccagcgcgtc gatgaccgag gctaactcct cgcgctccca gcgcaggaac agctccgctt
    14521 ttaacatcgg atagagcgct tcaacatgct gctgcaacgc atcacgcgaa atgcgacgat
    14581 gctgggtgat aatcgccgcc atcagcgaag gcataatcaa catatgcgcg atattgttac
    14641 gataataggt catcaacacc gcctgctcgc gcggcaggat gatgatatcg ccaatggtgt
    14701 ctttctcgac ctcaaactta ttcatctgca gcgcgtgagc gatgagctcg ccagcgctgg
    14761 cggcaggaac cgttgagtct gtggaataag ggacattgcg catcagatcg agatagcagt
    14821 caagctgctc ggtgagctgc tcgcgggtga gcgagcgctg acgcgacgct aacagcgcgg
    14881 tacaacacag gttcatcgcg tttgccgcgc cagcgttgtt aatacgcacc atcagatcgg
    14941 cggcaatact atttaccgtc ggcgtcagcc aggctgggcg tatggcctct atagggtcga
    15001 tagattcgcg ccactctggc acatgctggt tcaggtacgt catgagcggc atcggttcgc
    15061 caaagttaac gtagccctga cccagattgc gcagcttgct caagcctttc agcatctgcg
    15121 gcagactctc tttctctttt gtcgcgccgc gcagctcttt cgcataggtg cccacttcca
    15181 tgacgtgctc atagccaatg tagatcggta cgagggtaat tgggcgggta ccgccgcgta
    15241 gcatcgcctg gatagtcatc gacagggtgc cggttttcgg atctaacaaa cgtccggtac
    15301 gcgaacgtcc tccttcgaca aaatactcaa ccgagtaacc gcggctgaac agctcgccca
    15361 ggtattcgcg aaagacggtg gaatagagtt tattcccctt aaaggtgcga cgaataaaga
    15421 acgcgcccag acgacggaaa attgggccag cgggccagaa attaaggtta ataccggcgg
    15481 caatgtgcgg cggaaccagc ccctgatggt acagcacata agaaaggagc aagtagtcca
    15541 tatggctgcg gtgacagggt acatagacga tttcatgccc gtcgtgcgcc agttggcgta
    15601 cgcgctcggc gttatgcacg ttaatcccct ggtaaagtcg gttccaggta aaccccaaaa
    15661 tcctgtcggt caaacgaatc atctcgtaag agaagttcgc cgcgatctct tccatcagcg
    15721 caatggcgtt ttgctgcgct ttttcatgag agattttctt actgcgcgct tcgtcttcta
    15781 ccgcgcgggc gatcgctttc gaggccagca gtttgttaaa cagatcctga cgggcgggca
    15841 ggcgtgggcc aaccgccgcc aggcgctggc gagcaaagtg catacgcgcc acgcgagcca
    15901 gcttctgcgc gatgatttta tcggtgccgt gttcatcagc catgcgacgc aatgagacgg
    15961 acggcgagaa tcggacaaag ctatcgcggc ccagccagga gatggcaaag aatttctgta
    16021 cgccgttcag catacgtaaa ggcgggttct cttctccttt ttcacgaccc ggcgcgcggc
    16081 caaacatcac ggaaacgggc accatctgca cgtccaaagc tggattactc cgatgcagat
    16141 cgagataatc gtgaaaaagt ttcaccgact cttcttttgg cgtgtaatag gtaaagacac
    16201 gcggtccgcc gtgaataaat acatagcgtg gcaacagcgc gccgtcgatc tccagcggct
    16261 ccagcggatc cgggagatcg tgcgccagac attgcgcccg cagcgtcagt aagtccgctt
    16321 ttgagttgta tggcaagaca tacataatgg ggcgagaagt atcgagcccc aattcctggg
    16381 cgggttccgc cggaatagac ttgcttttta ccagtatgct taatggtaaa ttcagtaatt
    16441 tgtagtaaat tcgtggccag ccggacataa acgatgtaaa gcctctggtt aataatgcaa
    16501 atgcggtgca aggatatcag aaagtttagc gaatttctgt tgtatcccgt catacttcgc
    16561 gctgcgttac ggcagtccga atcgtgcagg gcaaccgtat aatgtcattg acgttaataa
    16621 tgtaaaaagg ttcttttgat ggccaataat accactggat tcaccagaat tatcaaagcg
    16681 gcaggatatt cctggaaagg atttcgcgcc gcatggactc acgaagcggc gtttcgccag
    16741 gaaagcctcg cggtattgct gggcgtcatc atcgcctgct ggctggatgt ggatgcgatt
    16801 acccgtgtgt tattgatagg ttccgtttta cttatcatga ttgttgaaat cctcaacagc
    16861 gctattgaag cggtcgttga ccgcatcggt tctgaatacc atgagctttc cggccgtgcg
    16921 aaagatatgg gatcggctgc ggtgctactg tctattttcg ttgccctgat gacctggggc
    16981 atcctgttat ggtcacattt tcgataaagg ttccaaattt tataaatctc ttgttttttg
    17041 cgccgtttgt ggttccaaaa tcacctttaa ctgtatatac tcacagcatg actgtatata
    17101 cacccagggg gcggaatgaa agcgttaacg gccaggcaac aagaggtgtt tgatctcatc
    17161 cgggatcaca tcagccagac aggtatgcca ccgacgcgtg cggaaatcgc gcagcgtttg
    17221 gggttccgtt ccccaaacgc tgcggaagaa caccttaagg cgctggcgcg caaaggggtg
    17281 cttgaaatcg tttccggcgc atcgcgaggt atccgtctgt tacaggaaga agaggacgga
    17341 ttaccgcttg tcgggcgtgt cgcggcgggt gaaccgcttc tggcgcagca gcatattgaa
    17401 ggccattacc aggtcgatcc ttcactgttc aaacccagcg ccgatttcct gctgcgcgtg
    17461 agcggtatgt cgatgaaaga catcggtatt atggatgggg atttgctggc ggtacataaa
    17521 acgcaggacg tccgtaatgg ccaggtggtt gtcgctcgca ttgatgatga agtgacagta
    17581 aaacggctga aaaagcaggg caataaagtg gaactgctgc cggaaaacag cgagtttaca
    17641 ccgatagtgg tggatctgcg cgaacaaagc tttacgattg aagggctggc ggtaggcgtc
    17701 attcgcaacg gggaatggtt gtaatctctt tttaatctcc ttgtaagccg ccatccggca
    17761 atcgtgtagc ctgatggcgc tgcgcttatc aggcctacgg gaatgcagtt cctgagatga
    17821 ttaatttgta ggccggataa ggcgttacgt cgccatccgg caatgcgctc gtttcgttta
    17881 actccttgtc aggcttttct ccatgccgct ttttacctcc tctgataaag ctctctggcg
    17941 tcttgcgttg ccgatgattt tttctaacat caccgtcccc ttactggggc tggtcgatac
    18001 ggcggtgatt ggtcatctgg acagccctgt tttcctgggc ggcgtggcgg tgggcgcgac
    18061 tgccaccagc tttcttttca tgctgctgct atttctacgt atgagcacca ccggcctaac
    18121 ggcgcaggca tttggcgcca aaaatccgca ggcgttagcc cgggcgctca ttcaaccgtt
    18181 attgctggcg ctgggcgcag gcgtgatgat tgtgctattt cgcacgccgc ttatcgagct
    18241 ggctttacat attgtcggcg ggaacgacgc tgtcctggtg caggcgagac gcttccttga
    18301 aattcgttgg ctaagcgctc ccgcgtcact ggcgaatctg gtgctgctcg gttggctgtt
    18361 aggcgttcag tatgcgcggg cgccggttat cttgttggtc gtgggcaata tcctcaaaat
    18421 cgcgctcgac ctgtggctgg tgatggggct tcatatgaac gtgcagggtg ccgccctggc
    18481 gacggtcatc gcagaatatg tcacgttact gatcggcctc atgatggtac gtaaagttct
    18541 ccatctccgc ggtgtgtcgc tggatatgct aaaacaggcc tggcgcggca acgtgcgccg
    18601 ccttttggcg ctcaatcgcg atatcatgct gcgctcattg ctccttcagc tttgttttgg
    18661 cgcaatcacg gtgtcaggcg cgcggctggg cagcgatatt atcgcggtaa atgcagtcct
    18721 gatgacctta ctcaccttta cggcctatgc gctggacggt tttgcttatg cggtggaggc
    18781 gcactccggt caggcttacg gcgcgcgtga cggtagcaag ctactggacg tctggcgagc
    18841 ggcgtgtcgt cagtcaggaa ttgtggcctt gttgttttcc acggtctatg ccctggcagg
    18901 cgaacatatt gtcgcgttac taacctcatt gccgcaaata cagctactgg cggatcggta
    18961 tcttatctgg caggtggtat taccgctggt gggcgtatgg tgctatctgc tcgacggtat
    19021 gtttattggc gcgacgcgcg ctgccgaaat gcgcaatagc atggctgtcg ccgcgggagg
    19081 attcgcgctg acgctcttcg ccctgccggt attaggaaat catggtttat ggctggcatt
    19141 aaccgtattt ctggcgctac gcggtctgtc gttgagcctt atctggcgtc gtcactggcg
    19201 cgagggtaca tggtttgcca gatcgtgatg gttaaaaatt ctgaatataa aaccgaaggc
    19261 cgaattcctg cctacaatta ttatcacgtc cagcagaaat tgcagtgcat ttgggcgaat
    19321 aacacctgct attcctaacc gaatgatgag gacaagatga tgaataaaga cgaagccggc
    19381 ggtaactgga aacagtttaa aggtaaaatg aaagaacaat ggggcaaact gaccgatgac
    19441 gatatgaccg ttatcgaagg taaacgcgac caactggtag gtaaaatcca ggagcgttac
    19501 ggttaccaga aagatcaggc ggaaaaagag gttgttgact gggaaacccg taacaactat
    19561 cgctggtaat atgttttccc ctatcaggag tacatggatg tgcttcccac tgtttgctta
    19621 tgaatgcggg cgtgcccctc tctactgccg cccgtttttc cgttcaggct aacgcggttt
    19681 tttcttcacc agcaccgagt gatcgtgacc acagtcgccc ggatggcgac acgcttccac
    19741 ttctacgcac gcagggcaca gaccgtgcgc ctcaataacg ttatgtcgta gcgcaaagcc
    19801 cattttagcc gccagcgtat gcatgatgtc ttccacgccc tcggcacact cttccttcac
    19861 cacgccgcaa cgatcgcaga taaacatggc cgagctgtgc gtcggctggt cgaacaggtg
    19921 gcaaaccaca taactattgg tggattccac tttatggaca aaaccctgtt cgagcaaaaa
    19981 atccagcgcg cggtagatgg tgggcggttt ggcctgtggt tccgtttcgc gcagcaaatc
    20041 gagcaaatcg tatgcgctga tggcaccctg ttgcagactc atcaggcgca gcacttcgag
    20101 gcgctgaggc gtcaggcgca cgttgcgctg cgcgcagagt ttttcagctt gcgccagtaa
    20161 ctcttgcgtt gtggtctttt ccatgtagca cctcgaatgg catgaaagtc taatccgtta
    20221 ctttaccacg agctgcttaa aactctgaaa ttaccccgcg acaatatatc gcctgctaag
    20281 cttttccgcg ccagtattct catctataca taatgagggt cgatattata acaacaggat
    20341 ttaacatcac tatttcacag caatagttcg cctctgtccg gtaaagcgtg gcggagggat
    20401 tacttcacct gataataaga tgggctaact gtgaacaaaa acgtcaaact ttcactgatt
    20461 gctatcgcgg tctcgctttt tatgacaaag caggcgggcg ccgccaatac ctggacggaa
    20521 gcgcgtaatg acgcaatggg cgggacgggc gttgcgtccg cgaattatgg cagcggagta
    20581 ctattaaatc cggcgttact ggcaaaagcc aaaccggaag acaatatcac tgttgtcctt
    20641 cctgcggtcg gcgtccagat tacggataaa gacaatctcc aggatgaaat tgacgatatc
    20701 agcgataaag tggattacta cgatgaggtc gtcgataacc ttacgctggg gcaaattctg
    20761 ctcaatccgc gaggcgtgct gaatcaattt cagggcgccg cgcgcgacct ggccgatgag
    20821 ctggaatatc tcaacggaaa aaccgcccgc gccaatgccg gcgccgggtt ggcggtaagt
    20881 attccagggc aaacgctttc cgtggcgttt atcgccaaag gttatgcgca tgggcgcgtg
    20941 agttcgtcca ttgatcagaa cgatattcag tatctgcgcg atatccagca tgatgaacgt
    21001 gtcgcgcttc gtgaagcagg acgcgctgct ttgctggggt ctgacgaaat tacaaagcat
    21061 ttaaactcta ccgcgttggg gcgggtagcg attgtatctg actacggtat tgcgctggcg
    21121 aagcagtttg tggtgggcga ggtgcctgtt tccattggcg ttacgccaaa actgcaaaaa
    21181 acctggctct ataactacac cacctcaatt tataactacg acagtagcga ctggaatagc
    21241 agccgttatc gcaatgacga tacgggtttt aacattgatg cggggcttgc tgccgatatc
    21301 ggtgaaaact ggacgttggg gctgagcggg caaaatctgg tatctcgcga tatcgatacg
    21361 aaagatattt acatcactaa tggtatgacg ggagaaacca ccaactacaa agagacatac
    21421 caaatccgcc ccctggttac cgcgggcatc gcatggcata acgatttgct gaccgtaagc
    21481 gccgatggcg atctgacgga aacgaaaggc tttaagagcg aagacaattc acagtacgtt
    21541 ggcgtcggcg ctgaagttcg accgttgtca tggctggcgg tgcgcgcagg gtatcgtgcg
    21601 gatgtgaaaa ataacgatag caatgtggtt accggcggtc ttggctttgc gccctttaac
    21661 cgtgcgcatc tcgatttaat gggactgtac ggcgaagatg aaacctgggg ggcaggcgcg
    21721 cagcttacaa tgacattctg aggtgctttc accggaggcg ctacgcctcc ggtttagcgt
    21781 tatgctatag taacgcccct tttttaaccg gatgcttatt tattcgccat gcagcctgaa
    21841 acccagtcct ccgctttacc tgcttatcgc ttctccatcg cgcctatgct cgactggacg
    21901 gacagacatt gccgctattt cctgcgtttg ctgtctcgcc agacgctgct ctacaccgaa
    21961 atggtgacca cgggcgcgat tattcacggt aagggtgact atctggctta tagcgaagaa
    22021 gagcatccgg tcgctctaca gcttggtgga agcgatccgg ctcagcttgc gcattgtgca
    22081 aagctggcgg aagcgcgtgg ctacgatgaa attaacctca acgtggggtg cccttccgat
    22141 cgcgtgcaaa atggtatgtt tggcgcctgt ttgatgggca atgcgcaact ggtcgccgat
    22201 tgtgttaaag ccatgcgtga tgtcgtctcg attccggtga cggtaaaaac ccgcattggt
    22261 attgacgatc aggacagtta tgcgttcctg tgtgatttca ttaatacggt ttccggtcag
    22321 ggcgaatgcg agatgtttat tatccatgcg cgcaaagcct ggctttctgg cttaagcccg
    22381 aaagaaaatc gtgagatccc gccgctggat tacccgcgcg tctatcagct aaagcgggat
    22441 tttccgcacc tgaccatgtc cattaacggc ggcatcaaat cgttggaaga ggcgaaggaa
    22501 cacttgcgcc atatggatgg cgtcatggtt ggccgcgaag cttatcagaa tccgggtata
    22561 ctggccgcgg tggatcggga gatctttggc gccgatacca ccgataccga cccggttgcg
    22621 gtggttcgcg cgatgtatcc ctatattgag cgtgaattga gccagggagc gtatctgggg
    22681 catatcactc gccatatgct ggggttgttc cagggtatcc ccggcgcgcg acagtggcgt
    22741 cgctatctga gcgaaaacgc ccataaagct ggcgcggatg ctgctgtact ggagcaggcg
    22801 ctaaaactga tagcagacaa gcgttaaaag ttcgccaaaa attagtcaat ctcaccacgc
    22861 tctgcgcagt tttgcagggc gttttcttta tatatcaaaa acataaatat tggcatgatt
    22921 tttgtaatag cttacctgac caaacccggt aagcgccgtg ccgccgggca atgccatctt
    22981 tatggggagc gactatgctg gaactacttt ttgtgcttgg cttttttctg atgttaatgg
    23041 tgacgggcgt ctccttgctg ggcattctgg ccgcgctggt tgtagcgact gccgtcatgt
    23101 tcttgggcgg aatgttcgcc ctgatgatca agctgttacc gtggctactg ctggcggtgg
    23161 ctgtggtgtg ggtgatcaaa gcagtaaaaa cgccaaaaat cccacagtat cagcgcaata
    23221 accgtcggtt ttactaaggt attgagcggt tcgtcacaac ctggaacttt gccgtcacaa
    23281 gcaaatagga atcgattatt aaatctgtca tgattgcgca ggtaacgaat tcatcgcgct
    23341 gtaccctaca tacagccgaa caaaaaaaga aagggcttcc cgggtggaag cccaatttct
    23401 ttgcagagct attacggaat cagcaggctt gagccctgtg tggcccggct ttccagcacc
    23461 tcatgcgcgc gacgggcatc ttttaacgca tagcgttgat tttcagccac atcaacttta
    23521 atcacgccgc tggcgatcaa tgagaacaat tcattgctgg cttcggtcag ttcttcacgc
    23581 gtcgtaatat acccctgtag tgaaggtcgc gtggcataca gggaaccttt ctgattcaga
    23641 atacctaaat tcacgccggt gacggggccg gacgcattgc cgaaactgac catcagtccc
    23701 cgacgttgca ggcagtccag tgaggcttcc caggtatctt tccccacgga gtcatagacc
    23761 acgcggactt ttttgccgcc ggtgatctct tttacccgtt cgacaatgct ctcctcacgg
    23821 taattaatca cctgccaggc gccggcgtcc agcgcccgct gcgctttttg cgcgctaccg
    23881 acggtaccga taagcttcgc gcccagcgct ttcgcccatt ggcaggcgat cagaccgacg
    23941 ccgcccgcag cggcatgaaa caggaagggt tcgtcgggtt tcacttcata ggttttgcgc
    24001 aacaggtaaa aaacggtcaa tcccttgaga aaagaggctg ccgcctgttc gaaagaaatg
    24061 gcgtcaggca aaatcgcggc tttatctgcg gggacgttat ggacggaact gtaagcgccg
    24121 agcgttgact gcgcgtagac gacgcgatcg cccacgcgaa tgtgctccac gccgctgccg
    24181 actttactga ccacacccgc agcttcggtt cccaggcccg caggcaacga cgggggcgga
    24241 tagagtccgc tacggatata ggtgtcgatg aagttgatac caatggcttt gttctcaacc
    24301 tggatttcgt gttccgccgg ttccgttggc gtaaactcca cggtctgaag cacttccgga
    24361 ccaccatgct tgtgaaattc aatacgcgtt gccatgcttc ctccaaaaga aatgtggtaa
    24421 tctttcgacc caatcactat ctcggtaact ccattcacta tggcaggaaa taaacccttc
    24481 aacaaaccac agactgatgc ccgcgaccgc gatccgcagg ttgccgggat aaaagtgccg
    24541 ccgcactcga ttgaagcgga acagtcggtg ttgggcggtt taatgctgga taacgagcgc
    24601 tgggacgatg tggccgagcg cgtggtggcg gaagatttct atacccgccc gcatcgccat
    24661 atctttacgg agatggggcg cttgcaggaa agcggcagtc ctatcgacct gattacgctc
    24721 gcggaatcgc tggagcggca gggccaactg gacagcgtcg gcggtttcgc ctatctggcg
    24781 gagctgtcta aaaacacgcc aagcgcggcg aatatcagtg cttatgcgga cattgtgcgc
    24841 gaacgcgccg tggtccgcga tatgatcgcg gtggcgcatg aaattgcgga cgccggttac
    24901 gatccacagg ggcgcaatag cgacgaactg ctggatctgg cggagtcgcg cgtcttccag
    24961 atcgcggaaa accgggccaa caaagacgaa ggtccgaaaa gcatcgacca gattctcgac
    25021 gccaccgtgg cgcgtattga gcagttgttc cagcaaccgc acgatggcgt tacaggcgtg
    25081 gataccggct atcaggatct caataaaaag acggcaggat tacagcgttc ggatttgatt
    25141 atcgtcgcgg cgcgtccctc catgggtaaa accacttttg cgatgaacct ctgcgaaaat
    25201 gcggcgatgt tgcaggataa accagtactg atcttcagcc tggagatgcc cggcgaacag
    25261 atcatgatgc gtatgctggc ctcgctgtcc cgcgtcgatc agacacgtat tcgtaccggt
    25321 caactcgatg atgaagactg ggcgcgaatc tccggcacga tgggcattct gctggagaaa
    25381 cgcaatatgt atattgacga ctcctcaggt cttacgccga cagaagtccg ttcgcgcgcg
    25441 cggcgtattt tccgcgaaca tggcgggtta agtctgatta tgatcgacta cctgcaattg
    25501 atgcgtgtgc cgtcgctttc tgataaccgt actctggaaa tcgccgaaat ttctcgctcg
    25561 ttgaaagcgc tggcgaagga actccaggtg ccggtcgtgg cgctatcgca gcttaaccgc
    25621 tccctggaac aacgcgcgga taaacgtccg gtgaactccg acctgcgtga atccggctct
    25681 attgaacagg atgccgactt aattatgttt atctaccgtg atgaggttta tcacgagaac
    25741 agcgacttaa aaggcattgc tgaaattatt attggtaagc agcgtaacgg tcctatcggt
    25801 acggttcgtc tgacgttcaa tggtcagtgg tcgcgcttcg ataactatgc gggaccgcaa
    25861 tacgatgatg agtaactctc cgtcattctt ttaacaagga attcaaatgc aagcggcaac
    25921 agtcgtcatt aaccgccgcg ctctgcgaca caacctgcaa cgtctgcgtg aactggcgcc
    25981 tgccagtaag ctggttgcgg tggtgaaagc gaacgcttat ggacacggtc ttctggagac
    26041 cgcgcgaacg ctccctgatg ctgatgcttt tggcgtggcg cgtcttgaag aggctctacg
    26101 tctgcgagcg ggcgggatta cgcagcctat cctgctgctg gagggttttt tcgacgccgc
    26161 cgatttgcct accatttccg cgcaatgtct gcataccgcc gtacataatc aggagcagct
    26221 tgccgccctg gaggcggtgg agctggcgga gccggtaacg gtctggatga agctggatac
    26281 cggtatgcat cgtctcggcg tgcgtcccga agaggcggag gcgttctacc agcgtctgac
    26341 gcactgtaaa aatgtacgcc agccggtgaa tatcgtcagc cattttgccc gtgcggatga
    26401 gccggaatgc ggcgctaccg aacatcagct cgacattttt aatgccttct gtcagggtaa
    26461 acccggtcag cgctctattg ccgcgtctgg cggtatcctg ctgtggccgc agtctcactt
    26521 tgactgggcg cgtccgggca tcattttgta tggcgtatcg ccgctggagc acaaaccttg
    26581 ggggccggat tttggttttc agccggtgat gtccttaact tccagtttga tcgcggtgcg
    26641 tgaccacaaa gcgggcgaac cggtgggcta cggcgggaca tgggtgagtg agcgcgacac
    26701 gcgcctgggc gtggtggcga tgggttatgg cgatggctac ccacgagcgg cgccttccgg
    26761 tacgccagta ctggtcaatg gtcgtgaagt cccgattgtc gggcgggtgg cgatggatat
    26821 gatttgcgtg gatttggggc caaacgcgca ggataacgcg ggcgatccgg tggtcttatg
    26881 gggtgaaggt ctgccggttg aacgtatcgc tgaaatgaca aaagtaagtg cttacgaact
    26941 tattacgcgc ctgacctcaa gggtggcaat gaagtatatt gattaaatgc gcggcgggcc
    27001 gggtggcgct tgcgcttatc cggcttgtat cgcgcatggg ctgcaggccg gataagacgt
    27061 tcacgccgtc atccggtaat atgcgcatcc accacaacat cctctcgatc ttctcgtcct
    27121 tccggtttat tgtgttattt cctgccctct gtaaacctgg agaaccatcg cgtgtttcaa
    27181 aaagttgacg cctatgccgg cgatccgatt ctttcactga tggagcgttt taaagacgac
    27241 tcccgtcacg acaaagtaaa tctgagcatt ggcctgtatt acaacgaaga cgggattatc
    27301 ccacagctca aaacggtggc cgaagccgaa gcccggctta acgcgcagcc gcatggcgcc
    27361 tcgctgtacc tgccgatgga aggactcaat acttatcgcc atactatcgc gcctttgctc
    27421 tttggcgccg atcacccggt tcttcagcaa cagcgcgtgg ccactatcca gacattaggt
    27481 ggttcaggcg cgctgaaagt gggcgcggat tttctgaagc gttatttccc cgacgcaggc
    27541 gtatgggtga gcgaccctac ctgggaaaac catattgcga tatttgccgg ggcaggattc
    27601 gaagtgagta cttacccctg gtatgacgac gcgactaacg gcatccgttt taacgatctg
    27661 ctggccacgc tgaatacgtt acctgcgcgc agtatcgtgc tgctgcaccc ctgttgtcac
    27721 aacccgaccg gggcggattt aacgccttcg caatgggatg cggtgattga gatagtgaaa
    27781 gcgcgcgatc tgattccgtt ccttgatatt gcctatcagg ggtttggcgc aggcatggac
    27841 gaggatgctt acgctattcg cgccattgcc agcgccgggt tacctgcgtt agtcagtaat
    27901 tctttttcga agattttctc gctgtatggc gagtgcgtcg gcggcctgtc ggtggtgtgt
    27961 gaagatgccg aaatcgccgc gcgggttctg ggacagctaa aagcgacggt gcgccgaatt
    28021 tactccagtc cgccgtgttt cggcgctcag gtggtcgcta cggtcctggg cgatgaggcg
    28081 ttaaaagcga gctggctggc ggaagtcgac gcgatgcgta cccgcattat atcgatgcgc
    28141 cagacgctgg tgaaagagct gaaggcggag atgcctgacc gcaacttcga ttacttgtta
    28201 cagcagcgtg gtatgttcag ctataccggg ttaagcgcgg agcaggtcga tcggttgcgc
    28261 gatgagtttg gcgtttacct gattgccagt ggccgcatgt gtgtcgctgg gcttaatgct
    28321 tcaaatgtac accgcgtggc gaaggcattt gccgctgtca tgtaatattc aggccggacg
    28381 gcgataacag tgctctccgg tctgacaata gctgttgtga tcatcctctt ttttcgtaac
    28441 aaaaccgcaa ataatccttc cttttgaccg ttactggcgt tatggtcaga tagttttttg
    28501 accaaagact catcttaata attataatat tttgaatttt aagggaaaag catgaaaaaa
    28561 ataaccctgg cgctgagcgc cgtctgttta ttgtttacgc taaaccattc cgcgaatgcg
    28621 ttagtatctt ccccttcgac gctcaatccg ggcactaatg ttgcaaaact cgcggaacaa
    28681 gcacctgtcc attgggtctc tgtcgcccag attgaaaaca gcctgaccgg acgcccgccg
    28741 atggcggtcg gctttgatat tgacgacacc gtgttatttt ccagccccgg attctggcgc
    28801 ggaaagaaaa cctattcccc ggacagcgac gattatctga aaaatccggc cttttgggaa
    28861 aaaatgaaca acggctggga tgagttcagt attccaaaag aagtggcccg acagctcatt
    28921 gatatgcatg ttcgccgtgg cgacagtatt tactttgtca ctggtcgtag tcagacgaaa
    28981 acggaaactg tgtcgaaaac gctggcggat aacttccata ttccggcggc gaatatgaat
    29041 ccggtgattt tcgccggcga taaaccggga caaaatacga aagtccagtg gctgcaggag
    29101 aagaacatgc gtatcttcta cggcgattcg gataacgata ttaccgcagc tcgtgattgt
    29161 ggtatccgcg gtattcgtat cctgcgcgcg gctaactcca cctacaaacc gctgccgcag
    29221 gcaggagcgt ttggcgagga agtcattgtc aactcggagt actaaaaatc aggagagcga
    29281 caggctctcc ttttttgcat gatttttgca caaacttgcc ccgctggctt ttaccttttc
    29341 cagacttgct gcacactatt caggagacgt ttgtttttag gaaggagcag cctatgtggt
    29401 atcagcgcac cattacactg agcgagaagc cgcgcgggtt tcatctaata acagatgaaa
    29461 ttaccgataa attgtctggc ttaccgcctg tcgaaacggg tttgctgcat ctgttgttgc
    29521 tacatacctc ggcctcgctg acgttaaacg aaaactgcga tcccaccgtg cgcgctgata
    29581 tggagcgcca tttcctgaaa accgttcccg ataatgcggc gtatgaacat gattacgaag
    29641 gggcggatga catgccttcg catattaagt cgtcagtatt gggcgtctcg ttgctgctgc
    29701 ctgtacgcca ggggcgttta cagttaggaa catggcaagg tatctggttg ggagagcacc
    29761 gtattcacgg cggtccacgt aaaatcatcg cgacactaca aggggaatga taatgaccat
    29821 ttcggaatta ctgcaatact gcatggcaaa acctggcgca gagcagagcg ttcacagcga
    29881 ctggaaagcg acgcaaatta aagtggaaga tgtacttttc gcgatggtaa aagaagttga
    29941 tgggcgcccg gcagcctctc tcaaaaccag cccggaactg gcagagttgt tacgccagca
    30001 gcacagcgat gttcgatcga gtcggcacct taataaagcg cactggagta cggtctatct
    30061 ggacggctcg ctgccggatt cacaactcta ttatctggtc gatgcctctt atcaacaggc
    30121 ggtaaatgcg ctgtcggaag ataaacgcaa gcagttgccg cagtcctgat tatagcgcgc
    30181 cgaccaacaa cgccagggcg atatcaatga ggtggatgac cgtagaccgg atacggctgc
    30241 cgagggcaat ttgcgcatta ttggcgcgta gcctggcgag gtcccgctgt ccttccagca
    30301 gaataatcat atcgtcgtcg tccagccagc cgcgagcatg ttcctgaagc gcgcgggcga
    30361 taaacgcggc ggactcgcgg ataccgtcgt cgctgtcttc tcttgcctgc ttatacgtct
    30421 ggataaactc ggcaattgcc gaggaggcta caggatgttc ggcccgggcg gcagtaaaca
    30481 ggttacgtat ttcgttaata gacgccattt tcttctccct gagtgcagcg ggcgccccaa
    30541 tgcagacact caccctgtat ggctaatttc cagacctgat tattttgctg ttggtatctc
    30601 tcagcctgga tgtaagtaag tggttgctta catttcataa cccgcgcata aagacgcaaa
    30661 tagtgatttt tcagcagcgc cagattatcg agtcggtgtt tatccccacc ttgacgggcg
    30721 acccgctcag cctgaaaaaa tgtctggcgg atatcgcggt catctttgag cagtgtctct
    30781 ttttgccacg gtattcgcgc cgcgtcctgc aggaagcggg ttgagcgcgc ttgtaatagc
    30841 gtcagttgtt gaaaagccac ggcgctaaag cggtcaggca gcgtacaggc ggctaaaaac
    30901 aggcacagca gtagtgtgat tgcgtagggc aacttcatgg tgttttccat aacagaccgt
    30961 ttgcgctatc acatgtcaga gcgaggcggc acgcaaatca caaatgctca acacggatac
    31021 aatgaggtgg gatgaggaaa aatgatgccg cttcccggcg aatcggaaag cggtgtgaag
    31081 gttatttgag cataggttta aggaagcggg cggtatgcga cgcctcgcac tccgccacgg
    31141 tttccggcgt accggcgacg agaatttcgc cgccgccgct gccgccttcc gggccgaggt
    31201 cgacaatcca gtccgccgtt ttaatgacgt ccaggttgtg ttcgatcacc acgatggtgt
    31261 tgccctgatc gcgcaactga tgcagcacgt caagcaactg ctgaatatcg gcaaagtgca
    31321 ggccggtggt cggctcgtcg agaatataca gcgtctgccc ggtgccacgt ttcgacagtt
    31381 cgcgcgccag cttcacgcgc tgggcctcgc cgccggaaag cgtcgtcgcc gactgaccaa
    31441 gacggatata ggtcagcccc acgtccatca gcgtctgcag cttacgcgcc agcgccggaa
    31501 ccgcatcaaa gaactcacgc gcttcttcaa tggtcatatc cagcacttcg tggatggtct
    31561 tgcctttgta cttaatctcc agcgtttccc ggttatagcg cttgcctttg cactggtcgc
    31621 acggcacgta aatatccggc agaaagtgca tttcgacttt aatgacgcca tcgccctggc
    31681 acgcttcgca gcgaccgccg cgcacgttga agctgaatcg ccctggcgtg tagccgcgcg
    31741 agcgagactc cggcacgcca gcaaaaagct cacgaaccgg ggtaaagacg cccgtatagg
    31801 tcgccgggtt ggaacgcggg gtgcgcccga tcgggctctg gtcgatatcg atcactttat
    31861 cgaaatgttc cagcccctga atatcccgat acggcgccgg ttcggcgata gtcgccccgt
    31921 ttaactgacg ctgggcgatg gggaacagcg tatcgttaat cagcgtcgat ttaccggaac
    31981 ccgagacgcc ggtgatacag gtaaacagcc ctaccggtag cgtaagggtc acatctttca
    32041 ggttgttgcc gcgcgcgccg gtgagtttga gcactttttc tggatttgcc ggcacgcgtt
    32101 gtttcggcac ttcaattttg cgtttaccgc tcatgtactg gccggtcagc gattccggta
    32161 ccgccataat ggcttccagc gggccttccg ccaccacctc gccgccgtga acgcccgcgc
    32221 cggggccaat atcaatcaca tggtcggcgg cgcggatggc gtcttcatcg tgttccacca
    32281 caatcacggt attgccaaga ttgcgcagat gaatcagcgt acccagcagc cgttcgttat
    32341 cgcgctggtg cagaccgatg gacggttcat ccagcacata catcacgccg actaacccgg
    32401 cgcctatctg gctcgccaga cgaatacgct gggcttcgcc gccggaaagc gtctctgccg
    32461 agcgggagag cgtgagatag ttcaggccga cgttcaccag aaacttgagg cgatcgccga
    32521 tctcttttag cactttttcg gcgattttcg cccgttgccc ggaaagcttg agattagtga
    32581 aaaaatccat cgcatggcca atgctcatat cggaaatagc aggcagcggc gtattttcca
    32641 caaatacatg gcgcgcttcg cgattcagtc gcgttccttc acagctggcg caggggcgat
    32701 tactgatgaa tttcgccagc tcttcgcgca ccgcgctgga ttccgtctct ttataacggc
    32761 gctccatatt atgcagcacg ccttcgaacg gatggcggcg cacggaggta tcgccgcgat
    32821 cgttcatata tttaaattcg atgttctctt tgccggaacc gtacagcacg actttgtgta
    32881 cgttggcgct gaggcttgcc cacggcgcat ccacgtcgaa cttatagtgt tccgccagcg
    32941 acttgagcat ttgaaagtag taaaaattgc gacgatccca accacgaatc gcgccgcctg
    33001 ccagcgacag gtcgggattc tggatcacgc ggtccggatc gaaatattgc tgaacgccga
    33061 gcccgtcaca ggtcggacag gcgcctgccg ggttgttgaa cgagaacaga cgcggttcca
    33121 gctcgcgcat actgtagccg caaatcgggc aggcaaaatt ggcggagaac agaagctcct
    33181 ccgctttctc atcgtccata tcggcaacaa ccgccgtgcc gccggataat tccagcgccg
    33241 tttcgaacga ctccgccagg cgttgggaaa gatcgttacg aactttgaag cgatcgatca
    33301 ccacctcaat ggtatgtttc ttttgtagct ccagcttcgg cggatcggag agatcgcaga
    33361 cttcgccgtc aatacgggcg cgaatgtaac cctggcttgc cagattttcc agcgttttgg
    33421 tgtgttcgcc tttacgctct ttaataatcg gcgccagcag catcaggcgt ttgccttccg
    33481 gctgcgacag cacgttatcg accatctggc taacggtttg cgccgccagc ggcacgtcat
    33541 ggtccggaca acgcggctcg cccacgcggg caaacagcag gcgcaggtag tcgtggatct
    33601 cggtaatagt acccaccgta gagcgcgggt tgtgcgatgt cgatttctgt tcaattgaga
    33661 tcgcgggcga tagcccctca atatggtcga catccggttt ttccatgagc gacaaaaact
    33721 gccgcgcgta agcggagagc gattcaacgt aacgacgctg cccttcggca tacagagtgt
    33781 cgaaagccag tgaggatttg cctgaacccg aaagcccggt cacgacaatc agtttgtcgc
    33841 gggggatgac gaggttaata tttttgagat tatgggtgcg ggcgccccga acttcgatct
    33901 tatccattca cctttcccgg tagagactcg gatgcctggt ttgtttgaag gacaaacggc
    33961 agaaacggct aattatgaca caatttaacc tgtttgaata tacagtattg gaatgcatct
    34021 tcagctaaag tatgcaacaa tatgaggttc gcgcgagtga cctggaacct gcatcgcagc
    34081 tattaaaatg ctacgtggaa atggtacact cacgcgttta cactatttat gaaacgtatt
    34141 caggagactc aattatggcc agcagaggcg taaacaaggt gattctcgtt ggtaatctgg
    34201 gccaggaccc ggaagtacgc tatatgccga gtggcggtgc tgtcgccaac ttaacgctgg
    34261 ctacttctga atcctggcgc gataagcaga ccggcgaaat gaaagagcag actgaatggc
    34321 accgggtggt gatgttcggc aaactggcgg aagtggccgg cgaatatctg cgtaaaggtt
    34381 ctcaggtgta tatcgaaggt caattgcgta cccgcaagtg gaccgatcag agtggccagg
    34441 aacgctatac gactgaaatt aacgttccgc agatcggcgg cgtgatgcag atgctgggtg
    34501 gtcgccaggg cggcggcgca ccggcaggcg gtcagcagca ggggggttgg ggtcagccgc
    34561 aacaacctca gcagccgcag ggcggtaacc agttcagcgg cggcgcgcag tcgcgtccac
    34621 agcaatccgc gccagcgccg tctaacgaac cgccaatgga ttttgacgac gacattccgt
    34681 tctgattttt ggtaaaaaac tcaaagcgtt atttgcattt tcgctatagt tctcgtctgc
    34741 tgaaatgcct ggtgtaaacc aggcatttta ttacctggta ttattgtctt agtatccctt
    34801 tcaaaaaaga gaagcgcata tctcacggaa tgacttacgg aaaaatgtcg cttatcgcct
    34861 ctggccgact cgcctcggca catcattatc cagccgaagt tcataaatgt actgcaataa
    34921 cccggattgt cttaaatatg aaagagaaat ctcatctgca aaatatataa tttatagcca
    34981 ttttttgaca acaaaaagat attataaaat aacggtagag aatggtcggt attatcaat
//
LOCUS       DAJVSD010000017        34989 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.017, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000017 DAJVSD010000000
VERSION     DAJVSD010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 34989)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34989)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34989
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.017"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            233..1372
                     /gene="arnB"
                     /locus_tag="OQP62_000684"
     CDS             233..1372
                     /gene="arnB"
                     /locus_tag="OQP62_000684"
                     /EC_number="2.6.1.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_024188371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4-deoxy-L-arabinose
                     aminotransferase"
                     /protein_id="HCS1720317.1"
                     /translation="MSDFLPFSRPAMGAEELAAVKTVLDSGWITTGPKNQELEAAFCR
                     LTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGATPVMVDV
                     DRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGARYGIPVIEDAAHATG
                     TSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDR
                     QSGGRAPQAEVLAPGYKYNLPDFNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPF
                     QPLSLPPWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYR
                     ERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQ"
     gene            1375..2358
                     /gene="arnC"
                     /locus_tag="OQP62_000685"
     CDS             1375..2358
                     /gene="arnC"
                     /locus_tag="OQP62_000685"
                     /EC_number="2.4.2.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-phosphate
                     4-deoxy-4-formamido-L-arabinose transferase"
                     /protein_id="HCS1720318.1"
                     /translation="MFDAAPIKKVSVVIPVYNEQESLPELIRRTTTACESLGKAWEIL
                     LIDDGSSDSSAELMVKASQEADSHIISILLNRNYGQHAAIMAGFSHVSGDLIITLDAD
                     LQNPPEEIPRLVAKADEGFDVVGTVRQNRQDSLFRKSASKIINLLIQRTTGKAMGDYG
                     CMLRAYRRPIIDTMLRCHERSTFIPILANIFARRATEIPVHHAEREFGDSKYSFMRLI
                     NLMYDLVTCLTTTPLRLLSLLGSVIAIGGFSLSVLLIVLRLALGPQWAAEGVFMLFAV
                     LFTFIGAQFIGMGLLGEYIGRIYNDVRARPRYFVQQVIYPESTSFTEESHQ"
     gene            2355..4337
                     /gene="arnA"
                     /locus_tag="OQP62_000686"
     CDS             2355..4337
                     /gene="arnA"
                     /locus_tag="OQP62_000686"
                     /EC_number="1.1.1.305"
                     /EC_number="2.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-4-amino-4-deoxy-L-arabinose
                     formyltransferase/UDP-glucuronic acid oxidase ArnA"
                     /protein_id="HCS1720319.1"
                     /translation="MKAVIFAYHDMGCQGVQAVLDAGYEIAAIFTHADNPAENTFFGS
                     VSRLAAGLGIPVYAPDNVNHPIWVDRIAELAPDIIFSFYYRNLLSEEILHLAPAGAFN
                     LHGSLLPAYRGRAPLNWVLVNGESETGVTLHRMVKRADAGEIVASQRVAIAQDDVALT
                     LHHKLCQAARQLLNSILPTMKCGNIPSVPQRESDATYYGRRRPEDGLIDWHKPVSTVH
                     NLVRAVAAPWPGAFSYNGSQKFTIWSSRICPDAQGALPGSVISVSPLRVACADGALEI
                     ITGQAGDGITVQGSQLAQTLGLVAGACLNRPPATSGKRRIRVLILGVNGFIGNHLTER
                     LLDEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI
                     ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSN
                     LIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGS
                     SRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIG
                     NPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESRSYYGKGYQDVAHRKPSID
                     NARRCLDWEPSIAMRDTVEETLDFFLRSVDIAERAS"
     gene            4334..5233
                     /locus_tag="OQP62_000687"
     CDS             4334..5233
                     /locus_tag="OQP62_000687"
                     /EC_number="3.5.1.n3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-deoxy-4-formamido-L-arabinose-
                     phosphoundecaprenol deformylase"
                     /protein_id="HCS1720320.1"
                     /translation="MTKVGLRIDVDTLRGTREGVPRLLATLHRHGVQASFFFSVGPDN
                     MGRHLWRLIKPRFLWKMLRSNAASLYGWDILLAGTAWPGKNIGNANAGIIRETATYHE
                     TGLHAWDHHAWQTHSGHWSIRQLEEDIARGITALEAIIGKPVTCSAAAGWRADGRVVR
                     AKEPFNLRYNSDCRGTTLFRPLLMPGQTGTPQIPVTLPTWDEVIGPAVQAQSFNTWII
                     SRMLQDKGTPVYTIHAEVEGIVHQPLFEDLLVRARDAGITFCPLGELLPASPESLPLG
                     QIVRGHIPGREGWLGCQQAVSAS"
     gene            5230..6876
                     /gene="arnT"
                     /locus_tag="OQP62_000688"
     CDS             5230..6876
                     /gene="arnT"
                     /locus_tag="OQP62_000688"
                     /EC_number="2.4.2.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A)
                     4-amino-4-deoxy-L-arabinosyltransferase"
                     /protein_id="HCS1720321.1"
                     /translation="MMKSIRYYLAFAAFIALYYVIPVNSRLLWQPDETRYAEISREML
                     ASGDWIVPHFLGLRYFEKPIAGYWINSLGQWLFGATNFGVRAGAILTTLLAAALVAWL
                     TFRLWRDKRTALLASVIFLSLFAVYSIGTYAVLDPMIALWLTAGMCCFWQGMQATTRT
                     GKIGMFLLLGATCGLGVLTKGFLALAVPVVSVLPWVIVQKRWKDFLLYGWLAVLSCFV
                     VVLPWAIAIARREADFWHYFFWVEHIQRFAMSDAQHKAPFWYYLPVLLAGSLPWLGLL
                     PGALKLGWRERNGAFYLLGWTIMPLLFFSIAKGKLPTYVLSCFAPIAILMARFVLHNV
                     KEGVAALRVNGGINLVFGIIGIVAAFVVSSWGPLKSPVWTHIETYKVFCVWGVFTVWA
                     FVGWYSLCHSPKYLLPAFCPLGLALLFGFSVPDRVMESKQPQFFVEMTQAPLASSRYI
                     LADSVGVAAGLAWSLKRDDIMLYGHAGELRYGLSYPDVQNKFVKADDFNAWLNQHRQE
                     GIITLVLSIDKDEDISALSLPPADNVDYQGRLVLIQYRPK"
     gene            6873..7208
                     /gene="arnE"
                     /locus_tag="OQP62_000689"
     CDS             6873..7208
                     /gene="arnE"
                     /locus_tag="OQP62_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxy-L-arabinose-phosphoundecaprenol
                     flippase subunit ArnE"
                     /protein_id="HCS1720322.1"
                     /translation="MIGIVLVLASLLSVGGQLCQKQATRPLTTGGRRRHLMLWLGLAL
                     ICMGAAMVLWLLVLQTLPVGIAYPMLSLNFVWVTLAAWKIWHEQVLPRHWLGVALIIS
                     GIIILGSAA"
     gene            7208..7585
                     /gene="arnF"
                     /locus_tag="OQP62_000690"
     CDS             7208..7585
                     /gene="arnF"
                     /locus_tag="OQP62_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxy-L-arabinose-phosphoundecaprenol
                     flippase subunit ArnF"
                     /protein_id="HCS1720323.1"
                     /translation="MGVMWGLISVAIASLAQLSLGFAMMRLPSIAHPLAFISGLGAFN
                     AATLALFAGLAGYLVSVFCWQKTLHMLALSKAYALLSLSYVLVWVASMLLPGLQGAFS
                     LKAMLGVLCIMAGVMLIFLPARS"
     gene            complement(7580..7837)
                     /gene="pmrD"
                     /locus_tag="OQP62_000691"
     CDS             complement(7580..7837)
                     /gene="pmrD"
                     /locus_tag="OQP62_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000455131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction protein PmrD"
                     /protein_id="HCS1720324.1"
                     /translation="MEWLVKKSHYVKKRACHVLVLCDSGGSLKMIAEANSMILLSPGD
                     ILSPLQDAQYCINREKHQTLKIVDARCYSCDEWQRLTRKPL"
     gene            complement(7935..9302)
                     /gene="menE"
                     /locus_tag="OQP62_000692"
     CDS             complement(7935..9302)
                     /gene="menE"
                     /locus_tag="OQP62_000692"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HCS1720325.1"
                     /translation="MTFTDWPWRHWRQVRSQAPALRLNDEVLSWRALCERIDALAGGF
                     AAQGVREGDGVLLRAGNQPRTLLAWLALMQCGARVLPVNPQLPQTLLEALVPKLTLRF
                     ALTLEGENAFSGLTVLQLRKSTVAYAVAWQPQRLVSMTLTSGSTGLPKAAVHTCQAHL
                     ASAQGVLSLMPFGPQDDWLLSLPLFHVSGQGIMWRWLFAGARMTVRDKQPLEQMLAGC
                     THASLVPTQLWRLLANRAAVTLKAVLLGGAVIPVELTDQASKQGIRCWCGYGLTEFAS
                     TVCAKEADGSDDVGAPLPGREIRIVDNEVWLRAASMAEGYWRDGKLIPLVNDEGWFAT
                     RDRGELNHGRLTIAGRLDNLFFSGGEGIQPEEVERVINAHPLVQQAFVVPVEDKEFGH
                     RPVAVVEYASQAGDVNLAEWVRDKLARFQQPVRWLTLPSELKNGGIKISRRALQQWVC
                     KICKN"
     gene            complement(9299..10261)
                     /gene="menC"
                     /locus_tag="OQP62_000693"
     CDS             complement(9299..10261)
                     /gene="menC"
                     /locus_tag="OQP62_000693"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HCS1720326.1"
                     /translation="MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLRDGEREGWGE
                     ISPLPGFSQETWEEAQTALLTWVNDWLQGSEGLPEMPSVAFGASCALAELTGVLPEAA
                     DYRAAPLCTGDPDDLVLRLADMPGEKIAKVKVGLYEAVRDGMVVNLLLEAIPDLHLRL
                     DANRAWTPLKAQQFAKYVNPDYRARIAFLEEPCKTRDDSRAFARETGIAIAWDESLRE
                     ADFTFEAEEGVRAVVIKPTLTGSLDKVREQVAAAHALGLTAVISSSIESSLGLTQLAR
                     IAAWLTPGTLPGLDTLHLMQAQQVRPWPGNALPCLKRDELERLL"
     gene            complement(10261..11118)
                     /gene="menB"
                     /locus_tag="OQP62_000694"
     CDS             complement(10261..11118)
                     /gene="menB"
                     /locus_tag="OQP62_000694"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001641973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HCS1720327.1"
                     /translation="MIYPDETMLYAPVEWHDCSEGYTDIRYEKSTDGIAKITINRPQV
                     RNAFRPLTVKEMIQALADARYDDNVGVIILTGEGDKAFCAGGDQKVRGDYGGYQDDSG
                     VHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAAENAIFGQTGPKVG
                     SFDGGWGASYMARIVGQKKAREIWFLCRQYDAQQALDMGLVNTVVPLADLEKETVRWC
                     REMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQP
                     DFSKFKRNP"
     gene            complement(11133..11891)
                     /gene="menH"
                     /locus_tag="OQP62_000695"
     CDS             complement(11133..11891)
                     /gene="menH"
                     /locus_tag="OQP62_000695"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HCS1720328.1"
                     /translation="MMLHAQHMPGQPGTPSLVFLHGFSGDCREWQPVGEQFHGCSRLY
                     IDLPGHGGSAAIPVGGFADVIRLLRATLISYNILKFWLVGYSLGGRVAMMAACQGIPG
                     LCGLVVEGGHPGLQNEQARAERRLSDGRWAERFRHEPLTEVFHDWYQQPVFASLTAQQ
                     RQALTALRSQNNGETLAAMLEATSLAVQPDLREVLNALAFPFYYLCGERDSKFRALAQ
                     EVAATCHVIRNAGHNAHRENPAGVVDSLAQILRL"
     gene            complement(11888..13558)
                     /gene="menD"
                     /locus_tag="OQP62_000696"
     CDS             complement(11888..13558)
                     /gene="menD"
                     /locus_tag="OQP62_000696"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HCS1720329.1"
                     /translation="MSVSAFNRRWAAVILEALTRHGVRHVCIAPGSRSTPLTLAAAEN
                     PAFIHHTHFDERGLGHLALGLAKVSQQPVAVIVTSGTAVANLYPALIEAGLTGEKLIL
                     LTADRPPELIDCGANQAIRQAGMFASHPSQTLSLPRPTQDIPARWLVSTIDNALAMLH
                     AGALHINCPFAEPLYGDMNDTGLVWQQRLGDWWQDEKPWLREARRLASDKQRDWFFWR
                     QKRGVVVAGRMSAEEGKKVAQWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKAVTEL
                     QQAQIVVQLGSSLTGKRLLQWQATCVPEEYWVIDNIEGRLDPAHHRGRRLVAKIADWL
                     ELHPAEKRKPWCVEIPRLAELAWQRVVAQRDTFGEAQLAHRIRDYLPEQGQLFVGNSL
                     VVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASAKSTLAIVGDLSALYDLN
                     ALALLRQVSAPFVLIVVNNNGGQIFSLLPTPQSKRERFYLMPQNVHFDHAAAMFNLRY
                     HRPENWEELESALAGAWRTPATTVIELVVNDTDGAQTLQQLLAQVSHL"
     gene            complement(13644..14939)
                     /gene="menF"
                     /locus_tag="OQP62_000697"
     CDS             complement(13644..14939)
                     /gene="menF"
                     /locus_tag="OQP62_000697"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase MenF"
                     /protein_id="HCS1720330.1"
                     /translation="MHSITTALENLTRQLSQEIPATPGLCVFDAPFPLNDAFDALSWL
                     ASQSSFPQFYWQQRNGDEEAAVLGAITVFSSLDLAQRFLRQHAQPDLRIWGLNAFEPK
                     EGYLLLPRLEWRRSGGTATLRLHLHSDVSLRDDARLAKAFLASLVGIKPVPALRLSLT
                     SEQHWPDKDGWVKLIQQATHTIAQEAFDKVVLARATDLQFSRPVNAAAMMASSRRLNL
                     NCYHFFMAFSADTAFLGSSPERLWRRRETALRTEALAGTVANHPDNHKAWQLGEWLMK
                     DDKNQRENMLVVEDICQRLQNCTHSLDVLPPQVLRLRKVQHLRRCIWTALNQADDTLC
                     LHQLQPTAAVAGIPREPARCFIEQHEPFEREWYAGSAGYLSTRQSEFCVTLRSAKVTA
                     NVVRLYAGAGIVRGSDPEQEWQEIDNKAAGLRTLLQMDA"
     gene            complement(15040..15345)
                     /gene="elaB"
                     /locus_tag="OQP62_000698"
     CDS             complement(15040..15345)
                     /gene="elaB"
                     /locus_tag="OQP62_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein ElaB"
                     /protein_id="HCS1720331.1"
                     /translation="MSYQFGESRVDDDLTLLSETLEEVLRSSGDPADQKYIELKARAE
                     QALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLARR"
     gene            complement(15400..15861)
                     /locus_tag="OQP62_000699"
     CDS             complement(15400..15861)
                     /locus_tag="OQP62_000699"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1720332.1"
                     /translation="MIDWQDLHHSELTVPQLYALLKLRCAVFVVEQRCPYLDVDGDDL
                     VGDNRHILGWHQDELVAYARILKSDNESDPVVIGRVIVSDAWRGAKLGQQLMAKTLES
                     CGRHWPDKPLYLGAQAHLQPFYARFGFIPVTDVYDEDGIPHRGMAREVHQA"
     gene            15922..16839
                     /gene="rbn"
                     /locus_tag="OQP62_000700"
     CDS             15922..16839
                     /gene="rbn"
                     /locus_tag="OQP62_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease BN"
                     /protein_id="HCS1720333.1"
                     /translation="MELIFLGTSAGVPTRSRNVTAILLHLQHPTQPGVWLFDCGEGTQ
                     HQMLNTAFHPGKLERIFISHLHGDHLFGLPGLLCSRSMAGNPHPLTVYGPQGVREFIA
                     TTLRLSGSWTDFPLQIEEISAGDILDDGLRKVTAFRLEHPLECYGYRVVEHDKPGALN
                     ARALKAAGVTPGPLFQALKAGKTVTLADGRQINGADYLAPAVAGKSVAIFGDTAPCEA
                     ALALAQGVDVMVHETTLDASMEEKANARGHSSTRQTATLAREAAVGRLIMTHISSRYD
                     DKGCQRLLAECRAIFPATELAYDFSVFPV"
     gene            16905..17909
                     /locus_tag="OQP62_000701"
     CDS             16905..17909
                     /locus_tag="OQP62_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012131502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HCS1720334.1"
                     /translation="MDNFQKDIDDRANLTLSNRFELLLFRLGTSLHEQKSELFGINVF
                     KLREIIPMPAFTRPAGMKAPLLGMVNIRDQVIPVIDLPAVAGCKPETGLNILLITEYV
                     RSVQAFAVESVENIMRLDWQQVHTAEKAVNGRYITSIACLDDNKETNNLALVLDVEQI
                     LYDIVPSSHDLRATNLKTNKFYITPGAVAIVAEDSKVACAMLEKGLNAMEIPHQMHVT
                     GKDAWERIQQLAQEAEAEGKPISEKIALVLTDLEMPEMDGFTLTRKIKTDERLKKIPV
                     VIHSSLSGSANEDHVRKVKADGYVAKFEINELSSVIQEVMERAAQNISGPLVSRQLLS
                     "
     gene            complement(18050..19507)
                     /gene="nuoN"
                     /locus_tag="OQP62_000702"
     CDS             complement(18050..19507)
                     /gene="nuoN"
                     /locus_tag="OQP62_000702"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416779.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HCS1720335.1"
                     /translation="MTITPQHLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLSVIG
                     LNAALVSLWFVGQAGAMDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNQ
                     EEFYLLVLIASLGGILLANANHLAALFLGIELISLPLFGLIGYAFRQKRSLEASIKYT
                     ILSAAASSFLLFGMALVYAQSGNLSFEALGKSLGDGMLHEPLLLAGFGLMIVGLGFKL
                     SLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAVRVVLGII
                     AFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQSGEMSMEAVGVYLAGYL
                     FSSLGAFGVVSLMSSPFRGPDADSLYSYRGLFWHRPVLAAVMTVMMLSLAGIPMTLGF
                     IGKFYVLAVGVQASLWWLVAAVVVGSAIGLYYYLRVAVSLYLHAPQQPGRDAPTNWQY
                     SAGGIVVLISALLVLVLGVWPQPLISLVQLATPLM"
     gene            complement(19514..21043)
                     /gene="nuoM"
                     /locus_tag="OQP62_000703"
     CDS             complement(19514..21043)
                     /gene="nuoM"
                     /locus_tag="OQP62_000703"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HCS1720336.1"
                     /translation="MLLPWLILIPFIGGFLCWQTERFGVKVPRWIALITMELTLALGL
                     QLWLQGGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAV
                     LCSWREIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHK
                     ASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYKATSVWTFNYEELLNTPMSHG
                     VEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSL
                     PLFPNASAEFAPIAMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGS
                     QLAYQGAVIQMIAHGLSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFA
                     VATLGMPGTGNFVGEFMILFGSYQVVPMITVISTFGLVFASVYSLAMLHRAYFGKAKS
                     QIASQELLGMSLRELFIILLLVVLLVLLGFYPQPILDTSHSAMSNIQQWFVNSVTTTR
                     P"
     gene            complement(21357..23198)
                     /gene="nuoL"
                     /locus_tag="OQP62_000704"
     CDS             complement(21357..23198)
                     /gene="nuoL"
                     /locus_tag="OQP62_000704"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HCS1720337.1"
                     /translation="MNMLALTIILPLIGFVLLAFSRGRWSENLSATIGVGSVGLAALV
                     TAFVGMDFFANGKQAFSQPLWTWMSVGNFNIGFNLVLDGLSLTMLSVVTGVGFLIHMF
                     ASWYMRGEEGYSRFFAYTNLFIASMVVLVLSDNLLLMYLGWEGVGLCSYLLIGFYYSD
                     PKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWA
                     TLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMT
                     PEILHLVGIIGAITLVMAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFH
                     LMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYACFLVGGAALSALPLV
                     TAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAGKG
                     ITHHLPLIVLMILSTFVGALIVPPLQGVLPQTTELAHGRVLTLEITSGVVAIAGILIA
                     AWLWLGKRTLVTSIANSAPGHLLGTWWYNAWGFDWLYDKVFVKPFLGIAWLLKRDPLN
                     ALMNIPAILSRFAGKGLVLSENGYLRWYVASMSIGAVVVLALLMVLR"
     gene            complement(23195..23497)
                     /gene="nuoK"
                     /locus_tag="OQP62_000705"
     CDS             complement(23195..23497)
                     /gene="nuoK"
                     /locus_tag="OQP62_000705"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006683663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HCS1720338.1"
                     /translation="MIPLTHGLILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASAL
                     AFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG"
     gene            complement(23494..24048)
                     /gene="nuoJ"
                     /locus_tag="OQP62_000706"
     CDS             complement(23494..24048)
                     /gene="nuoJ"
                     /locus_tag="OQP62_000706"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HCS1720339.1"
                     /translation="MEFAFYICGLIAILATLRVITHTNPVHALLYLVISLLAISGVFF
                     SLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAVLSAI
                     MLAVIVYAILGVNDQGIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR
                     EERAGEVLSNRADDRAKRKTEERA"
     gene            complement(24059..24601)
                     /gene="nuoI"
                     /locus_tag="OQP62_000707"
     CDS             complement(24059..24601)
                     /gene="nuoI"
                     /locus_tag="OQP62_000707"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015959823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HCS1720340.1"
                     /translation="MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRY
                     RGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFC
                     GLCEEACPTTAIQLTPDFELGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDG
                     KDKGEAENEAKPIDVKSLLP"
     gene            complement(24616..25593)
                     /gene="nuoH"
                     /locus_tag="OQP62_000708"
     CDS             complement(24616..25593)
                     /gene="nuoH"
                     /locus_tag="OQP62_000708"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015875065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HCS1720341.1"
                     /translation="MSWITPDLIEILLSILKAVVILLVVVTCGAFMSFGERRLLGLFQ
                     NRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVP
                     VSPNWVVADLNIGILFSLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTVSYEVFL
                     GLSLMGVVAQAGSFNMTDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAE
                     QELADGYHIEYSGMKFGLFFVGEYIGIVTVSALMVTLFFGGWHGPFLPPFVWFALKTA
                     FFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLLVTAAVILWQAQ"
     gene            complement(25590..28316)
                     /gene="nuoG"
                     /locus_tag="OQP62_000709"
     CDS             complement(25590..28316)
                     /gene="nuoG"
                     /locus_tag="OQP62_000709"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311194.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HCS1720342.1"
                     /translation="MATIHVDGKEYEVNGADNLLQACLSLGLDIPYFCWHPALGSVGA
                     CRQCAVKQYQNAEDTRGRLVMSCMTPATDGTFISIDDEEAKQFRESVVEWLMTNHPHD
                     CPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRY
                     YKDYADGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYNRK
                     WDMQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLK
                     DRPRQPVQRRGDDFITLNAEQAMQGAADILRQSKKVIGIGSPRASIESNFALRELVGA
                     ENFYTGIARGEQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVALA
                     VRQAVKGKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYRAP
                     VEDQARLGFAIAHALDNTAPAVDGIDSDLQNKIDVIVQALAGAKKPLIISGTNAGSSE
                     VIQAAANVAKALKGRGADVGITMIARSVNSMGLGMMGGGSLDDALGELETGSADAVVV
                     LENDLHRHASATRVNAALAKAPLVMVVDHQRTAIMENAHLVLSAASFAESDGTVINNE
                     GRAQRFFQVYDPAYYDNKTIMLESWRWLHSLHSTVENREVDWTQLDHVIDAVIAAMPQ
                     FAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANISVHEPRQPQDKDTMFAFSMEG
                     NNQPTAPRSEIPFAWAPGWNSPQAWNKFQDEVGGKLRHGDPGVRLIEATEGGLDYFTT
                     VPASFQAQDGQWRIAPYYHLFGSDELSQRSPVFQSRMPQPYIKLNPADAAKLGVNAGT
                     RVSFSYDGNTVTLPVEISEGLAAGQVGLPMGMPGIAPVLAGARLEDLREAQQ"
     gene            complement(28347..29684)
                     /gene="nuoF"
                     /locus_tag="OQP62_000710"
     CDS             complement(28347..29684)
                     /gene="nuoF"
                     /locus_tag="OQP62_000710"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HCS1720343.1"
                     /translation="MKNVIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTG
                     LSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDR
                     LLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNI
                     MGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNN
                     VETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTIAREILED
                     YAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGTALAMAVDHEIG
                     MVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLG
                     PGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW"
     gene            complement(29681..30181)
                     /gene="nuoE"
                     /locus_tag="OQP62_000711"
     CDS             complement(29681..30181)
                     /gene="nuoE"
                     /locus_tag="OQP62_000711"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HCS1720344.1"
                     /translation="MHENQQPQTEAFELSAAEREAIEHEKHHYEDPRAASIEALKIVQ
                     KQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHITGY
                     QGIQAALEKNLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPE
                     LLERYK"
     gene            complement(30184..31986)
                     /gene="nuoC"
                     /locus_tag="OQP62_000712"
     CDS             complement(30184..31986)
                     /gene="nuoC"
                     /locus_tag="OQP62_000712"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C/D"
                     /protein_id="HCS1720345.1"
                     /translation="MVNNMTDLTAQDAAWSTRDHLDDPVIGELRNRFGPDAFTVQATR
                     TGIPVVWVKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHRDGLPAADFSVFYHL
                     ISIERNRDIMLKVALSENDLRVPTFTKLFPNANWYERETWEMFGIDIEGHPHLTRIMM
                     PQTWEGHPLRKDYPARATEFDPFELTKAKQDLEMEALTFKPEDWGMKRGTDNEDFMFL
                     NLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIE
                     YLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMT
                     PVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPKRLD
                     SYEKAALRNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYENF
                     DFEVPVGGGVSDCYTRVMLKVEELRQSLRILQQCLDNMPEGPFKADHPLTTPPPKERT
                     LQHIETLITHFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPSF
                     AHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR"
     gene            complement(32073..32735)
                     /gene="nuoB"
                     /locus_tag="OQP62_000713"
     CDS             complement(32073..32735)
                     /gene="nuoB"
                     /locus_tag="OQP62_000713"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoB"
                     /protein_id="HCS1720346.1"
                     /translation="MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLHD
                     MVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTC
                     FTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPP
                     RPEAYMQALMLLQESIGKERRPLSWVVGDQGVYRANMQPERERKRGERIAVTNLRTPD
                     EI"
     gene            complement(32751..33194)
                     /gene="nuoA"
                     /locus_tag="OQP62_000714"
     CDS             complement(32751..33194)
                     /gene="nuoA"
                     /locus_tag="OQP62_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoA"
                     /protein_id="HCS1720347.1"
                     /translation="MSMSTSTEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARAR
                     HKNVPFESGIDSVGTARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVE
                     AAIFIFVLLAGLVYLARIGALDWTPARSRRERMNPETNSIANRQR"
     gene            complement(33587..33739)
                     /locus_tag="OQP62_000715"
     CDS             complement(33587..33739)
                     /locus_tag="OQP62_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720348.1"
                     /translation="MPICTRLTAQIVKVAVNQPVAIRSSMWAKNNQNIHFMNLHVKKL
                     EKLLLF"
     gene            complement(33819..34757)
                     /gene="lrhA"
                     /locus_tag="OQP62_000716"
     CDS             complement(33819..34757)
                     /gene="lrhA"
                     /locus_tag="OQP62_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LrhA"
                     /protein_id="HCS1720349.1"
                     /translation="MINANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQ
                     QMQRLEQLVGKELFARHGRNKLLSEHGIQLLGYARKILRFNDEACSSLMFSNLQGVLT
                     IGASDESADTILPFLLSRISSVYPKLALDVRVKRNAYMVDMVKSQEVDLVVTTNQPHS
                     LDCLNLRTSPTHWYCAAEYVLQRGEPVPLVLLDDPSPFRDMVLETLNAAGIPWRLAYV
                     ASTLLAVRAAVKAGLGVTARPVEMMSPDLRVLGAADGLPPLLDTEYMLCRDPNSQNEL
                     AMVIFHAMESYQNPWHYNQFSAEGGDDPLMVEGGFE"
BASE COUNT         7984 a        10120 c         9378 g         7507 t
ORIGIN      
        1 cgcgacggaa gaccagaaac ataaaaacag cttttgggca tgcataaaat gccttaaact
       61 ttcggcgaaa gcaaagcata attccgttaa aattatcttt ttacttcacc ttaatttctt
      121 aatgttaatt taatcttcat ccagtagggt tcagctaaat gcgttaaaaa ataagccctt
      181 ttctattgcc gaaatatttg aaaagcggct ttcaatggct gaaggaaaaa tgatgtcgga
      241 ctttttgcct ttctcccgtc cggcgatggg cgcggaagag ctcgctgccg ttaagaccgt
      301 actggactca ggttggataa caaccggccc gaaaaatcag gaactggaag cggcgttttg
      361 tcggctaaca ggcaatcaat atgccgttgc cgtcagttca gccactgccg gtatgcacat
      421 cgcgttgatg gcgctgggta ttggtgaagg cgacgaggtc attacaccgt caatgacgtg
      481 ggtttctacg ctaaatatga tcgttttact cggcgcgacc cccgtcatgg tcgatgtcga
      541 tcgcgatacg ctgatggtca cgcctgaaca tatcgaagcc gcgattacgc cacaaaccaa
      601 agcaattatc cccgtccact acgctggcgc gcccgccgat ctggacgcta tttacgctct
      661 tggcgcgcgt tatggcattc cggtgattga agacgcggcg cacgcgacag gaaccagcta
      721 caaaggtcgc cacattggcg cccggggcac cgcgattttc tccttccacg ccattaagaa
      781 cattacctgc gctgaaggcg gtatcgtcgt cacggataac ccgcaattcg ccgataaact
      841 gcgcagtctc aagtttcacg ggcttggcgt tgatgcctgg gatcgacaga gcggaggacg
      901 cgcgccacaa gcggaagtcc tggcgccggg ctacaaatat aatttgcccg acttcaacgc
      961 cgctatcgcg cttgcccagt tacagaaact ggatgcgctt aacgctcgcc gcgccgccat
     1021 cgcagcgcag taccatcagg caatggcaga ccttcctttt cagcctctga gccttccgcc
     1081 gtgggagcat attcacgcct ggcatttatt cattatccgg gtcgatgaag cccgctgcgg
     1141 tattacccgg gatgctctga tggcatcgct gaaaacgaaa ggcatcggca cagggctgca
     1201 tttccgcgcc gcgcatacgc aaaaatatta tcgcgaacgt ttcccaacgc tcacgctgcc
     1261 tgacaccgag tggaacagcg agcggatctg ctcactgccg ctcttcccgg acatgaccga
     1321 gagtgacttt gatcgggtca ttaccgccct tcatcagata gcaggacaat aagcatgttt
     1381 gacgccgccc ccataaaaaa agtctcggtg gttattcctg tctataacga acaggaaagc
     1441 ctgccggaat tgataagacg caccaccacc gcctgcgaga gtctgggcaa agcgtgggag
     1501 attttattga tagatgatgg tagcagcgat agctcggcgg agctgatggt taaggcgtcc
     1561 caggaggccg atagccatat catctctatt ttactcaacc gtaactacgg tcaacatgca
     1621 gcgattatgg cggggtttag ccatgtaagc ggcgatctca tcattacgct ggatgccgat
     1681 ctgcaaaacc cgccggaaga gatcccgcgc ctggtggcga aagccgatga agggttcgat
     1741 gtggtaggca ccgtgcgaca gaaccgacag gacagcctgt ttcgcaaatc ggcgtcaaaa
     1801 atcattaatc tgctgatcca gcgcacaacg ggcaaagcga tgggcgatta cggctgcatg
     1861 ttacgcgcct atcgccgccc tattatcgat accatgttgc gctgccatga acgcagcacc
     1921 tttatcccta ttctggccaa cattttcgct cgtcgggcta ccgaaatccc ggtgcatcac
     1981 gctgaacgtg aatttggcga ctctaaatac agttttatgc gtctcattaa cctgatgtat
     2041 gacctggtga cctgcctgac gacgacgcct ctgcgcctgt tgagtctgct gggcagtgtt
     2101 atcgccatcg gcgggtttag cctgtcggta ttgcttattg tacttcgcct ggcactggga
     2161 ccgcagtggg cggcggaagg cgtatttatg ctctttgccg ttctgtttac cttcatcggc
     2221 gcgcaattca tcggtatggg actgctgggc gaatacatcg gtcgcattta taacgatgtc
     2281 cgcgcccgcc cccgctattt tgttcaacaa gttatctacc cggaaagcac gtcgtttact
     2341 gaggaaagtc accaatgaaa gccgttattt ttgcctatca cgatatggga tgtcagggcg
     2401 tgcaggccgt actggatgca ggatatgaga ttgccgcaat tttcactcat gccgacaatc
     2461 ctgcggaaaa cacctttttt ggctccgtct cccggctggc ggcaggatta gggattccgg
     2521 tttatgcgcc ggataacgta aaccatccta tctgggtcga ccgcatcgct gaacttgcgc
     2581 cagatattat tttttcgttc tattaccgca acctgttaag cgaagaaatt ctgcacctcg
     2641 ccccggctgg cgcgttcaat ctgcacggtt ctctattgcc agcctatcgt ggccgtgcgc
     2701 cgctaaactg ggttctggtt aacggcgaaa gcgaaacggg cgtaacgctg catcgtatgg
     2761 tcaaacgtgc cgacgccgga gagattgtcg ccagtcaacg cgtcgctatt gcgcaggacg
     2821 atgttgcgct taccctgcat cataagctat gtcaggccgc gcgccagtta cttaatagca
     2881 tcctgcccac catgaaatgc ggcaatatac cttctgttcc tcagcgtgag tctgacgcta
     2941 cgtattatgg tcgccgcagg ccggaagatg gccttatcga ctggcacaaa ccggtttcca
     3001 cggtgcataa cctggtgcgg gcggtagccg ccccctggcc cggcgcgttc agctataacg
     3061 gctcgcaaaa attcactatc tggtcttccc gaatttgtcc ggatgcgcaa ggcgcgcttc
     3121 ccggctcggt aatttcggtc tctccgctgc gggtcgcctg cgccgatggc gcgctggaga
     3181 ttattaccgg ccaggccgga gacggcatta ctgtacaggg ctcgcagctt gcacagacgc
     3241 ttggtctggt ggcgggcgcg tgtttgaacc gtccaccagc gaccagcggt aaacgtcgca
     3301 ttcgcgttct catcctcggc gtcaacggtt ttatcggcaa tcatttgacc gaacggttac
     3361 tggatgaaga gaattacgag gtctacggta tggatatcgg cagcaacgcc attagccgat
     3421 tcctgctcca ccctcgcttt catttcgtgg agggagatat cagcatccac tcagaatgga
     3481 tcgaatatca tgtcaaaaaa tgcgatgtcg tactgccgct ggtagcaatt gcaaccccga
     3541 ttgaatacac ccgcaacccg ctgcgcgtct ttgaacttga ttttgaagaa aacctgcgga
     3601 ttatccgtta ttgcgtgaaa taccgtaaac gcgtggtttt cccgtctacc tctgaagtgt
     3661 acggcatgtg tacggacgcc tcttttgacg aagacaaatc gaatctgatc gtcgggccgg
     3721 tgaataagcc gcgctggatt tactccgttt ccaaacagct tctcgaccgg gtgatttggg
     3781 cttatggcga aaaagaggga ttgcgcttca cgcttttccg tccctttaac tggatggggc
     3841 cgcggctgga tagcctgaac gcggcgcgta tcggcagttc acgcgcgata acgcagttga
     3901 ttctgaacct ggtagaaggg acgccgatca agcttatcga cggcggtcag cagaagcgct
     3961 gtttcaccga tattcgtgac gggatcgaag cattattccg cattattgtg aatgagggcg
     4021 atcggtgcga tggcaaaatc attaatatcg gcaaccctga caacgaagcc agtattcagg
     4081 aactggcgac gctgttgctc gacagttttg ataagcatcc gctgcgctgc catttcccac
     4141 catttgccgg tttccaggtc gtcgaaagcc gtagttatta cggcaagggt tatcaggatg
     4201 tcgcacaccg gaaacccagt atcgacaatg ccaggcgctg tctggactgg gagccgtcta
     4261 ttgcgatgcg tgatacggtt gaagaaacgc tggacttctt tctgcgtagc gtcgatatcg
     4321 cggaacgcgc atcatgacga aagtcggttt acgcattgac gttgatacct tgcgaggaac
     4381 gcgtgaaggt gttccccggc tgctggcgac attgcatcgc cacggcgttc aggccagctt
     4441 tttcttcagc gtcgggccgg acaatatggg acgccatctt tggcgtctga taaaaccgcg
     4501 atttttatgg aaaatgctac gttcaaacgc cgcctcgctc tacggttggg atatcctgct
     4561 ggccggcacc gcctggccgg gaaaaaatat cggcaacgct aatgccggga ttattcgtga
     4621 aacggcaaca taccatgaga cgggactaca tgcctgggat caccatgcgt ggcagactca
     4681 cagcggccac tggagtatcc gccagcttga agaagatatt gcgcgcggca taacggcgct
     4741 tgaggccatt atcggaaaac ccgtcacctg ctcagccgcg gccggctggc gagcggatgg
     4801 gcgcgttgtt cgtgcgaaag aaccgttcaa cctgaggtat aacagcgatt gccgtggaac
     4861 caccttattc cgtccgctac tgatgccggg ccagacaggg acgccgcaaa tcccggtcac
     4921 cttacccacg tgggatgagg ttatcggccc cgccgttcag gcgcagtcgt tcaatacctg
     4981 gattatttcc cgtatgttgc aggacaaagg cacgccggta tataccatcc atgcggaagt
     5041 cgaaggtatt gtccatcagc cgctgtttga agatttgctc gttcgtgcac gcgatgcggg
     5101 gatcaccttt tgtcctctgg gcgaactgct gccggcatcg cctgagtctc tgccgttggg
     5161 gcaaattgta cgtggacaca tccctggccg tgaaggttgg ctggggtgtc aacaggcagt
     5221 gagcgcctca tgatgaaatc gatacgctat tatctggctt tcgccgcgtt tatcgcgctc
     5281 tactatgtta ttcctgtcaa cagccgcctg ctctggcagc cggatgaaac gcgctatgcc
     5341 gaaataagtc gggagatgct ggcgtctggc gactggatcg tgccgcattt tctgggatta
     5401 cgttattttg aaaaaccgat agccggttac tggataaaca gtctgggtca gtggcttttt
     5461 ggcgctacca attttggcgt gcgggccggc gctattttaa cgacattgct ggccgcagcg
     5521 ctggtggcgt ggctgacgtt ccgcttatgg cgggataaac gtaccgcgtt gctcgcctcc
     5581 gtgatctttc tctccctctt tgccgtttac agtatcggga cgtatgcggt actcgacccg
     5641 atgatcgcgc tttggcttac ggccgggatg tgttgtttct ggcaggggat gcaggccacg
     5701 acccgaacgg gcaagattgg gatgtttttg ctactgggcg caacctgcgg tctgggtgta
     5761 ttaactaaag ggttcctcgc cctggccgta ccggtggtga gcgtgctgcc gtgggttatt
     5821 gttcagaaac gctggaagga ctttttgctt tacggctggc tggcggtctt gagctgcttt
     5881 gtggttgtcc ttccctgggc gatcgccatt gcgcgacgcg aagccgattt ctggcattac
     5941 tttttctggg tggagcatat ccagcgattc gccatgagcg atgcccagca taaagcccct
     6001 ttctggtact atctgccggt gctgctcgcg ggaagtttac cgtggctggg gttactgcct
     6061 ggcgcgctta aactgggctg gcgcgagcga aacggcgcat tctatttgct cggatggacg
     6121 atcatgccgc ttctcttttt cagcattgcg aaagggaaac tgcccaccta tgttctttcc
     6181 tgtttcgcac cgatagcgat actcatggcg cgcttcgtcc tgcataacgt aaaagaaggc
     6241 gtcgccgcgc tacgtgtcaa cggcgggatc aacctggtgt tcgggataat cgggatcgtc
     6301 gcggcgtttg tcgtctcctc atggggcccg ctgaaatcgc cggtgtggac gcatatcgaa
     6361 acctataaag tgttttgcgt ctggggcgtc tttactgttt gggcgtttgt gggctggtat
     6421 agcctctgtc atagcccaaa atacctatta cccgcgtttt gtccgctggg actggcgctg
     6481 ctgttcggct tttccgtccc cgacagggtg atggagtcca aacagccaca gttttttgtc
     6541 gaaatgaccc aggcgccttt ggcatcaagc cgctatattc ttgccgacag cgtgggcgtc
     6601 gccgccgggc tggcctggag tctgaaacga gacgatatta tgctctacgg acacgcgggc
     6661 gaactcaggt atggtcttag ctatcctgat gtacagaata aattcgttaa agccgacgat
     6721 tttaacgcct ggctcaacca acatcgtcag gagggcatta ttacgctagt actttcaata
     6781 gacaaagacg aagacatcag cgcactttcc cttccccctg cggacaatgt tgattatcag
     6841 gggcgtctgg tgttaattca gtatcggcct aaatgatcgg catcgttctg gtgcttgcca
     6901 gtctgctcag cgttggcggt cagctctgcc agaagcaagc gacacggcca ttgacgacgg
     6961 gcggacgccg ccgtcacttg atgctgtggc tgggcctggc gctgatatgc atgggtgcag
     7021 cgatggtgct gtggctgctg gtgctacaaa ccctgccggt gggaattgct tacccgatgt
     7081 tgagtctgaa ttttgtctgg gtcacgctgg cggcctggaa aatctggcat gaacaggttc
     7141 tgccccgcca ctggttgggc gtcgcattaa ttatcagcgg cattatcatt ctggggagtg
     7201 cggcataatg ggcgtaatgt ggggactgat aagcgttgcg attgcctccc tcgcccagtt
     7261 gagtttagga ttcgccatga tgcgactgcc atcgatagcg catccactgg cgtttatttc
     7321 cgggctgggc gcatttaatg ccgcgaccct ggcgctattc gccggtttgg cgggatatct
     7381 ggtttccgtc ttctgctggc agaaaacatt acacatgctc gcgctcagca aagcctatgc
     7441 gctgctgagt ctcagttatg tgcttgtctg ggtagcctca atgttgttac ccggtttgca
     7501 aggcgctttc agcctaaaag cgatgctcgg cgtattgtgc attatggcgg gggtaatgct
     7561 gatttttctg cccgccagat cataatggct tgcgcgtcaa ccgctgccat tcgtcgcagg
     7621 aataacagcg tgcatcaacg atttttaagg tctggtgttt ttcccgatta atacaatact
     7681 gcgcatcctg taaaggcgac aggatatcgc cgggactcag taatatcatg gaattcgcct
     7741 cggcgatcat ttttagcgaa ccgccgctat cgcacagcac cagaacatgg cacgccctct
     7801 ttttgacata atgcgatttc ttaaccaacc attccatagc gcccccgttt cacgctgatt
     7861 gttcataaca cgttacacat caacggataa acaaaacggc aatagcgatg gaatggttgt
     7921 atattaacct aacattaatt tttacagatc ttacacaccc actgctggag cgcacggcga
     7981 gatattttaa tccctccgtt tttcagttct gacggcagcg tcaaccagcg aaccggctgt
     8041 tgaaaacgcg ccagcttatc gcgaacccat tcagcgaggt tcacgtctcc ggcctgcgat
     8101 gcatactcca caaccgcaac gggacgatgg ccaaactctt tatcttctac cggcacgaca
     8161 aaggcttgtt gcaccagcgg atgcgcgtta ataacgcgtt cgacttcctc cggctgaatg
     8221 ccttcgccgc cgctaaagaa caagttgtcc agccgcccgg cgatggttag cctgccgtgg
     8281 ttcagctcgc cgcgatcgcg cgtggcaaac cagccttcgt cattaaccag cgggatcagt
     8341 ttgccatcac gccagtaacc ttccgccata ctggcggcgc gcagccagac ttcattatcg
     8401 acgattctga tctctctgcc gggaagcggc gcgcccacat catccgaacc atcggcctct
     8461 ttggcgcata ccgtagacgc gaactccgtg agcccatacc cgcaccagca gcgaatccct
     8521 tgtttgctgg cctggtcggt gagttcaacc ggaatcaccg cgccgccgag caaaacggct
     8581 ttcagcgtca ccgccgcccg attcgccaac agccgccaca gctgcgtcgg caccaacgaa
     8641 gcatgagtac aacctgccag catctgctcc agcggttgct tatcgcgtac cgtcatgcgc
     8701 gccccggcga agagccaacg ccacataata ccctgcccgg atacatgaaa cagcggcagc
     8761 gatagcagcc agtcatcctg agggccaaac ggcattagcg aaagcacccc ctgcgcgctg
     8821 gcaagatgcg cctggcacgt atgtacagcc gcttttggca atcctgtgga acccgatgtc
     8881 agcgtcatgg aaaccagacg ctgcggttgc caggccacag catacgccac tgtacttttc
     8941 cgcaactgca acacggttaa tccggaaaac gcgttttcgc cttccagtgt cagcgcaaaa
     9001 cgcagcgtta acttcggcac cagcgcctcc agcaacgtct ggggcaactg cgggttgacg
     9061 ggcagaaccc gcgcgccgca ctgcatcagc gcaagccatg ccaacagagt gcgcggctga
     9121 ttcccggcgc gcagcaggac accgtcgccc tcccgtacgc cctgcgcggc aaacccgccc
     9181 gccagcgcat caatacgctc acagagggcg cgccagctta gcacttcatc gttcaggcgc
     9241 agagcgggcg cctgactgcg aacctgacgc cagtggcgcc acggccagtc cgtgaatgtc
     9301 ataacagtcg ttccagctca tcacgcttca gacaaggcaa cgcgttacca ggccaggggc
     9361 gaacctgttg cgcctgcatc agatgcaagg tatccagtcc gggcagcgtt cccggcgtca
     9421 accaggcggc aatccgcgcc agttgcgtca ggccgaggct ggactcgatc gaagagctga
     9481 tgaccgccgt cagtcccaac gcatgggcgg cagcgacttg ctcacgcact ttatcaagcg
     9541 atccggtcag cgtaggtttg ataaccacag ccctgacgcc ctcttcggct tcaaaggtga
     9601 aatccgcttc gcgcagactt tcgtcccagg caatcgcgat gccggtttca cgggcaaagg
     9661 cgcgggaatc atcccgcgtc ttacacggtt cttcgagaaa ggcgatacga gcgcggtaat
     9721 ccggattaac atactttgcg aactgttggg cttttagcgg cgtccaggcg cgattcgcat
     9781 ccagacgcag atgcagatcc gggatcgcct ccagcagcaa attaaccacc atgccgtcgc
     9841 gtaccgcttc atagagaccc actttgacct tagcgatttt ctcgccgggc atatcggcaa
     9901 gccgcagtac caaatcgtca ggatcgccag tgcataacgg cgcggcgcga tagtccgccg
     9961 cctccggcaa gacgccagtc agttccgcca gcgcgcagct tgcgccaaac gcgaccgaag
    10021 gcatctccgg taatccctcg ctcccctgaa gccagtcatt cacccatgtc aggagcgccg
    10081 tctgcgcctc ttcccacgtt tcctgactga agcccggcag cggggagatc tctccccacc
    10141 cttcacgctc gccgtcacgc agacaaacat acagcccgtc gcgagttttt aaccgcctgt
    10201 cgcgcagaac cacccccgcg tccatgggga tctgccagcg gtatacctgc gcgctacgca
    10261 ttatgggttc cgtttgaatt tgctgaagtc aggctgacgc ttctggttaa aggcgttacg
    10321 gccttcctgc ccttcttccg tcatgtagaa cagcatggta gcgttgccgg ccagctcctg
    10381 cagcccggcc tgaccgtcac aatcagcatt cagcgccgct ttcaggcaac gcagcgccat
    10441 cggactgttt tgcaacattt cgcggcacca gcgcacggtc tctttttcca gatccgccag
    10501 cggaacgacg gtgttaacca gccccatatc cagcgcctgt tgcgcatcgt actggcggca
    10561 caggaaccag atttcacgcg ctttcttctg accaacgata cgcgccatat acgaagcgcc
    10621 ccagccgccg tcaaaggagc cgactttcgg accggtctgg ccgaagatgg cgttttcggc
    10681 cgcgatggtc aggtcgcaca tcatgtgcag cacatgacca ccgccgatgg agtaacccgc
    10741 gaccatcgcg acaaccggtt ttggacaggt gcgaatctgg cgctggaagt ccagcacatt
    10801 caggtgatgc acgccggagt catcctgata accgccgtaa tcgccgcgca ccttctggtc
    10861 gccgcccgcg caaaacgctt tatcgccttc gccggtcaga ataatcacgc ccacgttgtc
    10921 gtcgtaacgg gcatccgcca gcgcctgaat catctctttg acggtcaacg gacgaaatgc
    10981 attgcgcacc tgcggacgat taatggtgat ttttgcaata ccgtcggtgg atttttcata
    11041 acgaatgtcg gtgtaaccct ccgagcagtc gtgccattct accggtgcgt aaagcattgt
    11101 ttcatcagga tagatcatag tgtgtccttt agtcagagac gcagaatctg agccagactg
    11161 tctaccacgc cagcggggtt ttcccggtgc gcgttgtgtc cggcgttacg aatgacatgg
    11221 catgtcgccg ccacttcctg cgccagggcg cggaatttgc tgtcgcgttc gccacataaa
    11281 taataaaacg gaaatgccag cgcgttaagc acctcgcgta aatccggctg gacggcaagc
    11341 gatgtcgcct ccagcatcgc agccagcgtt tcgccgttat tctggctacg cagcgccgtt
    11401 agcgcctgcc tttgctgcgc cgtcagcgag gcgaacaccg gctgctgata ccagtcgtga
    11461 aaaacctcag tcaagggttc atgacgaaaa cgctctgccc agcgcccgtc ggacaatcgt
    11521 ctttcagcgc gcgcctgttc attttgcagc cccggatgac cgccttcgac caccaggccg
    11581 cacaggccgg gtattccctg gcaggctgcc atcatcgcca cacggccgcc aagggagtat
    11641 cccaccaacc aaaactttag tatgttgtaa ctaattaacg tggcgcgcag taatctgatg
    11701 acatcggcaa agccgccgac cggaatagcc gcagatccgc catgtcctgg taagtcaata
    11761 taaagccgcg aacagccgtg aaactgttcg ccaaccggct gccattcgcg gcaatcgcca
    11821 gaaaaaccgt gcaggaaaac cagcgagggc gtcccaggct gtccgggcat gtgctgcgcg
    11881 tgcaacatca tagatggctt acctgagcca aaagttgctg cagcgtctgc gcgccatccg
    11941 tatcgtttac caccagctca atcaccgttg tcgccggggt tcgccacgcg ccagccagcg
    12001 cagactccag ttcttcccag ttttccgggc gatgatagcg caggttaaac atggcggccg
    12061 catggtcaaa atggacgttt tgcggcatca gataaaagcg ctcacgctta ctttgcggcg
    12121 tcggcagcag ggaaaagatc tgcccgccgt tattgttgac cacaatcaac acaaacggcg
    12181 cggatacctg acgtagtaac gccagcgcgt taagatcgta cagcgcggat aaatcaccga
    12241 cgatagccaa cgtcgatttg gcgctggcgc gctgcacgcc cgccgctgtg gaaagcaggc
    12301 cgtcaatgcc gctcgccccg cgattgctgt ataccggata gccggccggc aactgtgaca
    12361 gcgcgtcgat cagacgcacc accagactat tgcccacgaa caattgcccc tgctccggca
    12421 gatagtcgcg gatacggtgc gccagctgcg cttcgccaaa ggtgtctcgc tgcgcgacca
    12481 cccgttgcca cgccagttcc gccagacgcg ggatctctac acaccacggt ttacgttttt
    12541 ccgccggatg cagttccagc caatcggcga ttttcgctac cagtctgcgt ccacgatggt
    12601 gcgccgggtc cagacgacct tcaatattgt cgattaccca gtactcttcc ggcacgcagg
    12661 ttgcctgcca ttgcagtaag cgttttccgg taaggctact gccaagctgg acgacaatct
    12721 gcgcctgctg cagttcggtc accgctttgg cgttgccgag ccacaggtcg gcgcacggca
    12781 gcggctgccc ggtttgcgac aatacgtcgc caattaatgg ccatcccaga gtttgcgccc
    12841 actgcgccac ttttttgcct tcttccgcgc tcatacgccc ggcgacaacg acaccgcgtt
    12901 tttgtcgcca gaagaaccag tcgcgctgtt tgtcgcttgc cagtcgacgc gcttcgcgca
    12961 gccagggttt ttcatcctgc caccagtcgc cgagacgctg ctgccagacc agaccggtgt
    13021 cattcatatc gccatacagc ggttcggcaa aaggacagtt aatgtgcagc gcgcccgcat
    13081 gaagcatggc gagcgcattg tcgatggtcg acaccagcca gcgcgccgga atatcctgcg
    13141 tgggacgcgg caacgacaga gtttgggagg ggtgcgaggc aaacatcccc gcctgacgga
    13201 tcgcctggtt ggcgccgcag tcaatcagct ccggcgggcg atcggcggta agtaaaatga
    13261 gcttctcgcc cgtcagaccc gcctcaatca gcgccggata gaggttcgcc acggcggtac
    13321 ctgaagtgac aataacggca accggctgtt ggctgacttt cgccagccct aacgccaaat
    13381 gaccaagccc acgctcatca aagtgcgtat ggtgaataaa agcaggattc tctgccgccg
    13441 ccaacgtgag cggcgtggaa cgggaaccag gggcgataca aacatgcctg acgccatgac
    13501 gggttaaggc ttccaggatg accgccgccc agcgccggtt aaatgcactt actgacatga
    13561 gtttgtccgg tatcaatcat tgggactaag tataaagagc tgcaaaaatg gattattgat
    13621 atgggtcggg aatatgtgac tcattacgcg tccatctgca ataaggtacg taacccggcc
    13681 gctttattat ctatttcctg ccattcctgt tccggatcgg agccgcggac gattcccgcg
    13741 ccggcataca accgcaccac attggccgtc actttggctg aacgtaacgt cacgcaaaac
    13801 tcactttgcc gcgtggagag atagcctgcc gacccggcat accattcacg ttcgaacggc
    13861 tcatgttgtt ctataaaaca acgcgcgggt tcacgaggga tcccggcgac cgctgcggta
    13921 ggctgtaact ggtgcaggca gagcgtgtcg tccgcctgat taagcgccgt ccagatacag
    13981 cggcgcaaat gctgtacctt gcgcagtctg agcacctgcg gcggcagcac atccagcgag
    14041 tgggtgcagt tttgcagtcg ctggcagatg tcttcgacaa ccagcatatt ttctcgctgg
    14101 tttttatcgt ctttcattaa ccattcgcca agctgccagg ctttatggtt atccggatgg
    14161 ttcgccaccg tcccggccag cgcttcggta cgcagcgccg tttcacgacg ccgccagagc
    14221 cgctccggcg atgatcccag aaaggcggta tcggcggaaa aggccataaa aaagtggtag
    14281 cagttgagat ttaaacgacg actggacgcc atcatcgcgg cggcattgac cggacgggag
    14341 aattgtaagt cggtggcccg cgccagcaca actttatcaa acgcctcttg cgcaatagtg
    14401 tgggtggcct gctgaatcag cttcacccaa ccgtctttgt ccggccagtg ttgttcgctc
    14461 gtgagcgaaa ggcgcagcgc cggaacaggc ttaataccga ccagagaagc gagaaacgct
    14521 ttcgccaggc gcgcatcatc gcgtagcgaa acgtcactgt gcagatgtaa gcgtaaggtc
    14581 gccgtaccac cgctacgtcg ccactccagc ctcggcagca ataagtagcc ctctttcggc
    14641 tcgaacgcat tcagccccca aatacgcagg tcaggctgcg cgtgctgacg taaaaaccgt
    14701 tgcgccagat cgagcgatga aaagacggtg atggccccga gaacggcagc ttcttcgtcg
    14761 ccattgcgct gttgccagta gaattgcgga aaggatgact ggctggccag ccagctcaat
    14821 gcatcgaagg catcgtttaa agggaaaggc gcatcgaaaa cgcaaagccc tggcgtcgcc
    14881 ggtatctctt gcgatagctg acgcgtcaga ttttccagcg cagtagtaat agaatgcacg
    14941 cggcccctcc ctgttaaaaa ccccacatta tacggggtac tgccctaaaa aagcagtacc
    15001 tcatttaggg agggttgcaa ttctgttcag tggggggatt tagcgccgcg ccagcagcag
    15061 tccaagcacc agtcctaccg ccgcgcctac gccaataccc tgccagggtt tttcatgaac
    15121 gtagtcatcc gctttataaa cggcctgctt tgcccggtaa taatagctat ccgacgcatg
    15181 gcttacgcgg tttttcacct cttccagcgc ttgttccgcg cgggctttca gctcaatgta
    15241 tttttgatcg gcgggatcgc ctgaggaacg taaaacctct tccagcgttt cgctgagcaa
    15301 agtcagatca tcatcaacac gtgattcacc aaattgatat gacattctca ttctccgttg
    15361 tgttaacacc tgctcctaac tatagtcaac ggtttcggtt tatgcctgat gaacctcccg
    15421 cgccattccc cggtgcggaa tgccgtcttc gtcataaaca tcggtgacgg gaataaaacc
    15481 aaaccgcgca taaaaaggtt gcagatgcgc ctgcgccccc agatatagcg gcttatccgg
    15541 ccagtgccgc ccacaagatt ccagcgtttt cgccattaat tgctggccca gtttcgcccc
    15601 tcgccaggca tcgctgacga tcacccggcc aatgacaacc gggtctgatt cgttatcact
    15661 tttcagaatc ctcgcatacg ccaccagctc atcctgatgc cagcccagaa tatgccgatt
    15721 gtcgccgact aaatcatcgc catccacatc caggtaagga cagcgctgtt ctaccacaaa
    15781 gaccgcgcag cgcaatttga gtaacgcgta aagttgagga acagtaagtt cgctatggtg
    15841 gagatcctgc cagtcaatca tgatgcgctc ctgtgttgtg gtaatcttgg gttaaacgat
    15901 aaccaaacgc gtatggacaa gatggaatta atttttttag gtacgtccgc aggcgttccc
    15961 acacgctcac gcaatgtaac ggcaatttta ttacatctgc aacatccaac gcagccggga
    16021 gtatggcttt ttgattgcgg cgaagggaca cagcatcaaa tgcttaatac cgcgtttcat
    16081 cccggtaagc ttgagcgcat ttttatcagc catcttcacg gcgatcatct gtttggcctg
    16141 ccgggtctgc tatgcagccg gtcgatggcg gggaatcccc atccgctaac cgtatacggg
    16201 cctcaaggcg tgcgtgagtt tattgcaacc acactgcgcc ttagcggttc atggaccgat
    16261 tttccgttgc aaattgaaga aattagcgct ggcgatattc ttgacgacgg tctgcgtaaa
    16321 gtgaccgcat tcaggctgga gcatccactg gagtgctacg gatatcgcgt tgttgaacat
    16381 gacaagcctg gcgcgctgaa tgccagggcg ttaaaagccg caggcgttac gcccggcccg
    16441 ctgtttcagg cgttgaaggc aggaaaaacc gtcacgcttg ccgatggaag gcagatcaat
    16501 ggcgccgact accttgctcc cgccgtggcc gggaaatcag tggcgatttt cggcgatacc
    16561 gcgccctgcg aggccgccct cgcactggcg cagggtgtgg atgtgatggt tcatgaaacc
    16621 acgctggatg cgtcaatgga ggagaaagcc aacgctcgcg gacacagctc cacccgtcaa
    16681 accgcgacgc tggcgcggga ggctgccgtt ggtcggctga tcatgaccca cattagctca
    16741 cgctatgacg ataaaggctg tcagcgctta ctggcggaat gccgcgctat tttcccggcg
    16801 acggagctgg cttacgattt ttctgttttc ccggtttagc gctccatttt ttgtcctcat
    16861 tgccgataac actaaaaaag gcaggctttc ataatgaggt taggatggac aattttcaga
    16921 aagatattga tgacagggcc aatttaaccc tgtccaaccg ttttgaactg ctgttattcc
    16981 gtcttggtac atcgctgcat gaacagaagt cagagctgtt cggtatcaat gtatttaagc
    17041 tgcgcgaaat catacctatg cccgccttta cgcgcccggc aggcatgaaa gcgccgctat
    17101 tgggcatggt caatattcgg gatcaggtca ttccggtgat tgatttgcca gcggtagcgg
    17161 gctgcaagcc ggaaaccggg ctgaatattt tgctgatcac cgaatatgtg cgcagcgtac
    17221 aggcatttgc cgtcgagtcg gtggaaaata ttatgcgtct tgactggcaa caggtgcata
    17281 ccgccgagaa agccgtcaac ggtcgctaca tcaccagtat tgcctgcctg gatgacaaca
    17341 aagaaaccaa caacctggcg ctggtgctcg acgttgagca gatcctttat gatattgtcc
    17401 cctccagcca cgatctgcgc gccaccaatc tgaagaccaa taaattttat attacccccg
    17461 gcgcggttgc cattgtggcg gaagactcca aagtcgcctg cgcgatgctg gaaaaagggc
    17521 tgaacgcgat ggaaattccg catcagatgc atgtgaccgg caaggatgcc tgggagagaa
    17581 tccagcaact ggcgcaggaa gcggaggccg aaggtaagcc aattagcgag aaaatcgcgc
    17641 tagtcctgac agaccttgag atgccggaga tggatggctt tacgttaacg cgtaaaatta
    17701 aaaccgatga acggctgaaa aagatcccgg ttgttattca ctcttccctt tccggcagcg
    17761 ccaacgaaga tcatgtgcgt aaggtgaaag ccgacggcta cgtggccaag tttgagatta
    17821 acgaactctc ttcagtgata caggaagtga tggaacgcgc ggcgcaaaac atcagcggcc
    17881 cgctggtaag ccggcagttg ctaagttaaa ttccggtcgc tgagacctta caggccggat
    17941 ggcggcgcaa gcgccttatc cggtctaccg tcctgagtca ttttaaagaa tgacatcagg
    18001 taataaaaaa cccgcttcgt gaagcgggtt tttcgttttt acttattgct tacatcaacg
    18061 gcgtcgctaa ctgcacaagg ctaatcagcg gctgcggcca gacgcccagt accaacacca
    18121 gcaacgcgga gatcagcacc acgataccgc ctgcgctgta ctgccagttt gtcggcgcgt
    18181 cgcgtcccgg ttgctgcggc gcgtgcaggt agagactcac cgcaacgcgc aggtagtagt
    18241 acaaaccaat cgcggaaccc accaccacgg cggcgaccag ccaccacagg ctggcctgaa
    18301 cgccgaccgc cagcacgtag aatttgccga taaagcccag cgtcattggg atacctgcca
    18361 gcgacagcat catcaccgtc atcaccgcgg caagaaccgg acggtgccag aacagaccac
    18421 ggtaagagta cagggagtcg gcatccgggc cgcggaacgg gctggacatc aggctgacca
    18481 cgccaaacgc gccgaggctg ctgaacagat aaccggccag ataaacgcct accgcttcca
    18541 tcgacatctc gccgctctgc agggcaatca gcgccaccag cagatagccg aggtgagaga
    18601 tagaagagta accgagcaga cgtttgatgt tggtctggct cagcgccatc aggttaccga
    18661 agatgataga ggcaaaggcg ataatgccca gcaccacgcg taccgcttcg ctgtcgccta
    18721 ccggcgcata caggaacaga cgcattacca cgccgaagat agcgattttg ctcgccgtcg
    18781 ccaggaaggt agaaaccggc gcaggcgcgc cctggtaaac gtctggcgtc cacaggtgga
    18841 acggcaccag agagagttta aagcccagac cgacaatcat caggccaaag cccgccagca
    18901 gcaacggctc gtgcagcata ccatcgccga ggctcttacc gagcgcttcg aaagacaggt
    18961 tgccggactg cgcatagacc agcgccatcc cgaacagcag gaaagacgag gcggcggcgg
    19021 agaggatggt gtatttgata ctggcttcca gcgagcgttt ctggcggaaa gcataaccaa
    19081 tcaggccgaa cagcggcagt gagatcagtt caataccgag gaacagcgcc gccagatggt
    19141 tggcgttcgc cagcagaatt ccccccaggc tggcgattaa caccagcagg tagaactctt
    19201 cctggttatc gttatagcct tccagccacg ggtaggcaaa agtacaggtg gcgaggctcg
    19261 ccagcagcac cagcccggtg tagagcatcg caaagccgtc aacgcgcatc agcggcgtga
    19321 cgtccattgc cccggcctgg ccgacaaacc aaagcgaaac cagagcagcg ttaagcccaa
    19381 tgaccgacag cgtggcattg aggaagtgat tgcgtcgcca cgcaatggag agcatcacaa
    19441 ccaccaccgt caagccgacg atcagcagcg gtagcagcgc aatcaggtgt tgtggagtta
    19501 ttgtcatggc gatttacggc cttgtagtag taacggaatt aacaaaccac tgctggatgt
    19561 tgctcatcgc agaatgcgag gtatccagaa tcggctgcgg atagaagcca agcagtacca
    19621 gaagcaccac cagcaacaga atgataaaca gctcgcgcag cgacatccct agcagttcct
    19681 ggctggcaat ctggctcttc gctttaccaa agtaagcgcg atgcagcatc gccagcgagt
    19741 atacagaggc gaataccagc ccaaaggtcg agataacggt aatcatcggc accacctggt
    19801 agctgccgaa cagaatcata aattcgccga caaagttacc ggtgcccggc ataccgagcg
    19861 tcgccaccgc aaagaacatg gacagcgcag gcaaccactt catcttgccc cacaggccgc
    19921 ccatcatacg catgtcacgc gtatgcagac gttcgtacaa ctggccacac agaatgaaca
    19981 gaccggctgc ggacaaaccg tgtgcaatca tctgaatcac cgcgccctgg tacgccagct
    20041 gactgccggt gtagatagcg atcagcacga agcccatgtg ggaaacggag gtataggcaa
    20101 tcaggcgctt gatgtcgtat tgggtaaagg ccatccacgc gccgtagaaa atgccgatga
    20161 cgcccagcca catggcgatg ggcgcaaact ccgccgacgc gttcgggaac aatggcaggg
    20221 agaaacgcag cagaccgtaa gcggcggttt tcagcaagat ccccgccagg tcgacggaac
    20281 cggcggtcgg cgcctgggag tgcgcatccg gcagccagcc atgcagcgga accaccggca
    20341 ttttcaccgc gaaggcgatg aagaagccca gcatcagcag atattccaca ccgtgggaca
    20401 tcggggtatt cagcagctct tcatagttga aggtccacac gctggtcgct ttatagtgca
    20461 caaacaccag cgccaggatg gcaatcaaca tcaccagacc actcgcctgg gtgtaaatga
    20521 agaacttggt tgccgccgtg atacgcgttt taccgtcaga agctttgtgg ccccacagcg
    20581 ctatcaggaa gtacatcggc accagcatca tttcccagaa gaagaagaac aggaacatgt
    20641 cgatggccag gaacacgccg ataacgccgc ctaagatcca catcaggttg aggtggaaga
    20701 agccctgata tttttcgatt tctcgccaag agcaaagcac cgccagaacg ccgagcaggc
    20761 cggtcagcac caccattagc agcgacagtc cgtcgagcgc cagatggata gagatgccaa
    20821 aacgcgggat ccacggcagg acaaattcag attgccactg tggaataccg gcggattgcg
    20881 tcagtgagta gccgccctgc aaccacaatt gcagaccgag cgccagcgtc agttccatgg
    20941 taatcagcgc tatccagcgc ggcactttca cgccaaagcg ttcggtctgc cagcacagaa
    21001 agccgccgat aaaggggatt aatatcaacc agggtaataa catagctaag tatgtccctt
    21061 atatttactc ctgctcaggc tatctcactc gtcagcccaa atcctgccag tgctcacaca
    21121 aaacgcagcg cgttttgaac gtccgtaagg acggccccgt aggggtgagc ttcgcgaatc
    21181 atcctcacgt acttcagtac gctccggttg ctgtgcgctg gcggtatccg gtctgacttc
    21241 gccgatgacg cctgtacttc aggaacagat tttcaacgaa ttctaaaaat tatttttggg
    21301 tttgtaggcc ggataagcac tgcgccatcc ggcagtcgtt catccagcca acaaactcaa
    21361 cgcagtacca tcagcagcgc cagcaccaca accgcgccga tgctcatgga tgccacatac
    21421 cagcgcaaat aaccgttctc gctcagtacc aggcctttgc ctgcaaaacg ggaaaggata
    21481 gccggaatgt tcatcaacgc attaagcggg tcgcgcttca gcagccaggc gataccgagg
    21541 aatggcttga cgaatacttt gtcgtacagc cagtcaaagc cccaggcgtt ataccaccag
    21601 gtccccagca gatggcccgg cgcgctgttg gcgatcgacg tcaccagcgt acgtttaccc
    21661 agccacagcc atgcggcaat caggatgccg gcaatcgcca ctacgccaga ggtaatttcc
    21721 agggtcaaca cacgaccatg cgccagttca gttgtctgcg gcagcacccc ctgcagaggc
    21781 ggcacaatca gcgcgccaac aaaggtagac agaatcatca ggacaatcag cggcagatgg
    21841 tgggtaatcc ccttccctgc atgagcatga atttgttctt taccgtggaa tacgatgaaa
    21901 atcatccgga aggtgtacag ggaggtcatg aacgcgccaa ccagacccgc caccatcaga
    21961 ttgatatgac cgttcgccat cgcgccagcc aggatctcat ccttactgaa gaagcccgca
    22021 gtgaccagcg gcagcgccga cagcgccgcg ccccccacca ggaagcaggc atacaccagt
    22081 ggaatggact tacgcagacc gcccatctta aagatgttct gttcgtgatg gcaggccaaa
    22141 attaccgagc cggatgccag gaacagcagc gctttaaaga aggcgtgcgt catcaggtgg
    22201 aaaatcgccg catcccacgc ctgcacgcca agcgccagga acatgtagcc aatctggctc
    22261 atggtggaat aggccagcac gcgtttgatg tcggtctgca ccagcgcggc gaaacccgcc
    22321 atgaccagcg taatcgcccc gataatgccc accagatgca gaatttccgg ggtcatcagg
    22381 aacaggccat gcgtgcgtgc gatcaggtag acaccggcgg taaccatggt ggcggcgtgg
    22441 atcagcgcgg agaccggcgt cggaccggcc atcgcgtcgg caagccaggt ctgcaacggt
    22501 agctgcgcag atttaccgac cgcgccgccc agcagcatca gcgtcgccca catcagcatg
    22561 ttgttgccgt cagcaaagtg cgctggcgcc agctcgacca tttcgcggaa gttcagcgtg
    22621 cccagttcgt tgtagaggat gaacagcgcg aaggcgagga atacgtcacc gacacgggtc
    22681 accacgaagg ctttcattgc cgccgcgcca ttcttcggat cgctgtaata gaagccgatc
    22741 aacagataag agcacaggcc cacgccttcc cagccgaggt acatcaacag caggttatcg
    22801 gacagcacca gaacaaccat gctggcgata aacaggttgg tataagcgaa gaagcgggag
    22861 tagccctctt ctccacgcat gtaccaggaa gcgaacatgt ggatcaggaa gccgacgccg
    22921 gtgaccacag agagcatggt cagcgacagg ccgtccagca ccaggttaaa accgatgttg
    22981 aagttaccga ccgacatcca cgtccacagc ggctggctga acgcctgttt gccgttggcg
    23041 aagaaatcca tcccgacaaa cgctgtcacc aacgccgcca gaccaacgga gcccacgcca
    23101 atggtcgcgg agagattttc cgaccagcgt ccgcgagaga acgccagcag tacaaagcca
    23161 atcaatggca gaataatggt taaggcaagc atgttcatcc acgcatctca cttactgaat
    23221 cgatgttcag gttctggcga cggcgatgga gttgcagcaa cagcgcaagt ccaatactcg
    23281 cttccgcagc cgcaaggctg atggcgagaa tgtacatcac ctgaccatcg gtctggcccc
    23341 agtagctccc ggcgaccaca aaggccagcg cggaggcgtt aatcatgatt tccagcccga
    23401 tcagcataaa cagcagattg cggcggataa ccagaccggt taaacccagg acgaataaaa
    23461 tcgcagcgag gatcagtccg tgtgttaagg ggatcatgcg cgctcctccg tttttctttt
    23521 cgcgcggtca tcggcgcggt tgcttagcac ttcgcccgca cgctcttcac gaccgacgtg
    23581 gaacgccacc accaggcctg ccagcagcag catagacgcc agttcgaccg ccagaacata
    23641 aggcccgaac agcgtaatgc ccaccgcttt cgcgctaatc ggcgtgccgt cgatgccctg
    23701 gtcgttaacg cccagaatgg cgtacacaat aaccgccagc ataatggccg acaaaaccgc
    23761 cggaccaatc cacacctgcg gcttcagcca ctggcgttcc tgttcgattt cgctgccgcc
    23821 gaggttgagc atcatcacca cgaacacaaa cagcaccata atggcacccg cgtagacgat
    23881 aatttccagc gcaccggcaa agtaagcgcc cagcgaaaag aacaccccgg aaatcgccag
    23941 tagcgatatc accagataca acagcgcgtg taccggattg gtatgggtga tcactcgcag
    24001 ggtcgcgagg atggctatca ggccacagat ataaaaagcg aattccattg ccctctcctt
    24061 acggtaacag gctcttgacg tcgataggct tggcttcgtt ctctgcttcg cctttatctt
    24121 tgccgtcgat tgccataccc gccatccggt agaagttata ttccgggtat ttgcccggac
    24181 cggaaatcag cagatcctct ttttcgtaca ccagatcctg acgtttgtat tcgcccagtt
    24241 cgaagtccgg ggtcaactga atcgccgtgg tcgggcacgc ttcttcgcac aggccgcaga
    24301 agatgcagcg tgagaagtta atgcggaaaa attccggata ccagcggcca tctttggtct
    24361 ccgctttttg cagagagata cagcctaccg gacaggctac cgcgcacagg ttacaggcaa
    24421 cgcagcgctc ttcaccgtcc gggtcgcgcg tgagcacgat acggccacgg taacggggcg
    24481 gtaaatagac cggctcttcc ggatacatcc gcgtttcgcg tttcgcgaac gcatgcaggc
    24541 cgatcatcca gatactgcgt acctgagtgc cgaaacctac taataattct tttaaggtca
    24601 tggtctttgt gtcccttatt gcgcctgcca cagaatgaca gccgccgtta ccagcaagtt
    24661 gatgagcgtc agcggcaggc aaactttcca gccgaaggac attacctggt cataacgcgg
    24721 acgcggtaac gacgcacgaa tcaaaatgaa catcatcatg aagaacgcgg ttttcagcgc
    24781 gaaccagacg aatggcggta agaacgggcc atgccagcca ccgaagaaca acgttaccat
    24841 cagcgcggaa acggtgacga tgccgatgta ctcccccacg aagaacagac cgaatttcat
    24901 accggaatat tcgatgtggt aaccgtccgc cagttcctgc tcggcttccg gctggtcaaa
    24961 cgggtgacgg tgacagaccg ctacgcccgc gatggcgaaa gtaacaaacc caaagaattg
    25021 cggaatcacg ttccacagat gcgcctggtt attgacgata tcggtcatat taaatgaacc
    25081 ggcctgcgcc accacgccca tcagggaaag accaaggaac acttcgtagc tcaccgtctg
    25141 ggcagacgcg cgcatcgcgc ccagcagcga gtatttgttg ttgctcgacc aaccggcgaa
    25201 cagtaccgcg taaaccgcca gaccggccat catcagggag aacaaaatcc cgatgtttaa
    25261 atcggccacc acccagttag ggctaaccgg cacaatggcg aaggagagca gcagcgaagt
    25321 aaacgcgatc atcggcgcca gggtaaagat gacgcgatcc gagaatttcg ggatccagtc
    25381 ttctttaaag aacatcttga tcatatccgc gaccagctgg agcgagccgc cccagccaac
    25441 gcggtttggt ccataacggt tctggaacag acccagcaga cgacgttcgc caaagctcat
    25501 gaaggccccg caggtgacga ccaccagcag aatcaccacc gctttgagaa tgctcagcag
    25561 gatctcaatc agatccggtg taatccaact cattgttgcg cctcccgcag atcctcaaga
    25621 cgcgcgccag ccagaaccgg cgcgatgcca ggcataccca tcggcagccc tacctgccct
    25681 gccgctaacc cttcagagat ttcaaccggc agcgtcaccg tattgccatc gtagctaaag
    25741 gagacgcgag tcccggcatt gacgcccaac ttcgcagcat ccgccgggtt aagtttgata
    25801 tacggctgcg gcatacggct ctggaagacc ggagaacgct gagacaattc gtcgctgcca
    25861 aacaggtggt aatacggcgc aatacgccac tgaccgtcct gcgcctggaa gcttgccggc
    25921 acggtagtga aataatccag accgccctca gtcgcttcaa tcaaacgcac gcccggatcg
    25981 ccgtgacgca gtttgccgcc cacttcatcc tggaatttgt tccacgcctg cggagagttc
    26041 cagcccggcg cccaggcgaa cggaatttca gatcgcgggg cagtcggttg gttattccct
    26101 tccattgaga aggcgaacat ggtgtcttta tcctgcggct gacgtggttc atgcacgctg
    26161 atattggcgc gcatcgccgt acgaccgctg taacgatgcg gttcgcgcgc cagcttctgc
    26221 ccacgaatgc ggaaggtcgc atccggcgcg gcgtccttaa tgccggcaaa ttgcggcatg
    26281 gcggcaatga ccgcgtcgat cacatggtca agctgtgtcc agtccacttc gcggttttcg
    26341 acggtgctgt gcagcgaatg cagccagcgc cagctttcca gcataatcgt cttgttatcg
    26401 tagtaggccg ggtcataaac ctggaagaag cgctgcgcgc ggccttcgtt gttgatgacc
    26461 gtaccatcgc tttcggcgaa gcttgccgcg gaaagcacca gatgagcatt ttccataatc
    26521 gccgtgcgct gatggtcaac caccatcacc agcggcgctt tggcgagcgc ggcgttcacg
    26581 cgcgtagcgc ttgcatgacg gtggagatcg ttttccagca ccaccaccgc gtccgcgctg
    26641 ccggtttcca gctcgcccaa cgcatcgtca agcgaaccgc cgcccatcat acccagcccc
    26701 atgctgttca cggagcgggc aatcatagta ataccgacgt cggcgccacg gcctttcagc
    26761 gctttcgcca cgttggcggc cgcctgaatc acctcactgc taccggcgtt agtgccggag
    26821 ataatcagcg gttttttcgc gccggccaac gcctgcacaa tgacatcaat tttgttttgc
    26881 aagtcgctgt cgataccgtc aaccgcaggc gctgtattgt ccagcgcatg ggcaatcgca
    26941 aagcccaggc gcgcctgatc ttccaccggc gcgcgataag tccaggcggc gatatcatcc
    27001 agacgggtgt cgtccacgtt agtcacgaac agcggatgtt tggcacgctg gccgatgtta
    27061 aggatggccg caatctgcca gtcggccact ttctgcgccg ccgccatttc acgcgcttta
    27121 cctttcaccg cctggcgtac cgccagcgca acgcgcgcgc cggtctgagt gacatcctca
    27181 cccaagacca gtaccgcgtc ataagattcg atctcccgca gcgccggggt gtaaattccg
    27241 ccttcacgca gcactttcag cgccagttgc agacgttcct gctcgccgcg cgcgataccg
    27301 gtgtagaagt tttccgcacc aaccagctca cgcagcgcaa agttgctctc aatgctggcg
    27361 cgtggcgaac cgataccgat cactttcttc gactggcgca gaatatccgc cgcgccctgc
    27421 atcgcctgct cggcgttgag agtaataaag tcatcgccac gacgctgaac cggctgacgc
    27481 gggcggtctt tcaggttcac atagccatag ccgaaacgac cgcggtcgca gaggaagtaa
    27541 tggttaacgg taccgttgta acggttttcg atacggcgca gttcgccata gcgctcgccc
    27601 gggctgatgt tacagccgat ggaacactgc tggcagatgc tcggcgcaaa ctgcatgtcc
    27661 catttacggt tgtaacgctc ggagtgcgtt ttatcggtga agacgccggt cgggcaaatc
    27721 tcgaccaggt taccggagaa ttcgctttcc agcgtaccgt cttccggacg cccgaagtag
    27781 acgttgtcat gcgcgccata gacgcccaga tcggtaccgt cagcataatc tttgtagtaa
    27841 cgtacacaac ggtagcaggc gatgcagcgg ttcatttcgt gcgagatgaa cggccccaga
    27901 tcctggttgc ggtgggtacg tttggtgaaa cggtagcggc ggaaactgtg acccgtcatc
    27961 acggtcatat cctgaagatg gcagttaccg ccctcttcac agaccggaca gtcgtgcggg
    28021 tggttagtca tcagccactc caccacgctt tcacggaact gtttcgcttc ttcgtcgtca
    28081 atagagataa aggtaccgtc ggtggctggc gtcatacagg acatcaccag gcgaccacgc
    28141 gtatcttccg cgttttggta ttgcttcacc gcacactggc ggcaagcacc gacgcttccc
    28201 agcgccgggt gccagcaaaa atacggaata tcaaggccga gggacagaca tgcctgtagc
    28261 aggttgtccg cgccgttgac ctcgtattct ttgccgtcta catgaatcgt agccattagc
    28321 atgcttccaa attaaaaatc gttaactcac cagcgctctt tgagcaggtt cggctgaata
    28381 ccattgatta aatgggtatt actgaacggc tgcttgatgc cagcttcgaa ttcttcgcgg
    28441 aaatacttaa ttgcgctttg cagtggctca accgcgcccg gcgcatgcgc gcagaaggtt
    28501 ttacccggcc cgaggaatcg acacagttgc tcaagcgtct cgatatcccc cggctggcct
    28561 tcgccacgct ccagcgcgcg cagaattttc acgctccacg gcaacccgtc gcggcatggc
    28621 gtacaccagc cgcaggattc gcgggcaaag aactcttcca ggttacgcac cagcgacacc
    28681 atgccgattt cgtggtctac cgccatcgcc agcgcggtgc ccagacggct ccccgcttta
    28741 ccgatgcttt cgaattccat cggcagatcg aggtgtgctt cggtcaggaa gtctgtcccc
    28801 gcgccgcccg gttgccaggc tttgaatttc aggccgtcac gcataccgcc ggcgtagtct
    28861 tcgaggatct cgcgcgcgat ggtgccgaac ggtaattccc acaggcccgg attcttcacg
    28921 cggcccgaga agcccatcag cttggtaccc gcatctttgc ttttcgagat gttctggtac
    28981 cactccacgc cgttggcgag gattgccggg acgttacaca acgtttcgac gttattcaca
    29041 caggtcggct tgccccatac gccggaggtc gccgggaaag gcggcttgga gcgcgggttc
    29101 gcgcggcggc cttcgaggga gttaatcagc gccgtttctt caccacagat gtaacgccct
    29161 gccccggtgt ggacaaacag ttcgaagtcg aacccggtgc ccatgatatt tttgccaagc
    29221 agcccggcct cggttgcttc ggcaatcgca cggcgcagat gtacagccgc ttcgatatat
    29281 tcgccgcgca ggaagatgta accacgatac gctttcagcg cgaacgcgga gatcagcatg
    29341 ccttccacca gcaggtgcgg cagttgttcc atcagcagac ggtctttata ggtgcccggc
    29401 tccatttcat cggcgttaca cagcaggtaa cggatgttca tggattcatc tttcggcatc
    29461 aggctccact tcagaccggt ggaaaagccc gcgccgccgc gccctttcag accagcgtct
    29521 tttacctggc tgacgatttc atccggagac aggccggtca gcgccttacg cgcgccttcg
    29581 tagccgtttt tgctacgata ttcatccagc cagaccggct gtttgtcatc gcgcagacgc
    29641 caggtcagcg gatgggtttc gggagtacgg ataacgtttt tcatttatac cgctccagta
    29701 gttcaggaat ggcttccggg gtcagatggc tgtgagtatc ctcatcaatc atcatgttcg
    29761 gccctttatc gcaattcccc aggcagcagg tcggcagcag cgtaaagcgg ccatcaaagg
    29821 tcgtctgccc cggtttgatg ttgagatttt tttccagcgc ggcctgaatc ccctgatagc
    29881 cggtgatatg gcacaccacg ctgtcgcagt agcgaatcac gtggcgaccg accggctgac
    29941 ggaagatctg gctgtagaat gtggcgacgc cttcgacgtc gctcgccgga atacccagca
    30001 catcggcaat agcgtagatc gcgccgtccg gcacccagcc acgctgcttc tgaacgattt
    30061 tcagcgcttc aatggacgcc gcacgcgggt cttcgtagtg gtgcttctcg tgctctatcg
    30121 cttcacgctc tgccgcactc agctcaaaag cctcggtttg tggttgttga ttctcgtgca
    30181 taattagcgg tccacatctg acataacaaa atcgatacta cccagataga caatcaggtc
    30241 ggagaccagg ctaccgcgga tcgccgaggg aatctgctgc aggtgcgcaa agctcggcgt
    30301 gcgcacgcgg gtacggtagc tcatagtgct gccgtcgctg gtcaggtagt aactgttaat
    30361 ccccttcgtc gcttccacca tctggaagga ctcctgcgcc ggcatcaccg ggccccagga
    30421 gacctgcagg aagtgggtga tcagggtttc gatatgttgc agcgtgcgct ctttcggcgg
    30481 cggcgtggtc agcgggtgat ccgctttgaa cggcccttcc ggcatgttat cgaggcactg
    30541 ctgaagaatg cgcagactct ggcgcagctc ttccactttc agcatcacgc gggtatagca
    30601 gtcggaaacg ccgccgccca ccggcacttc aaagtcaaag ttttcgtagc cagaatatgg
    30661 acgccattta cgcacgtcga agtctatccc ggtcgcgcgc agccctgcgc cggtggtgcc
    30721 ccactccagc gcctctttcg cgccgtaagc ggcaacgccc tgcgaacgcc ctttcagaat
    30781 ggtgttacgc agcgcggctt tctcgtaaga gtccagacgc ttcggcatcc actcaaggaa
    30841 ctctcgcagc aggcgatccc aaccgcgcgg caagtcgtgc gcgacgccgc cgatacggaa
    30901 ccaggccggg tgcatacgga aaccggtaat ggcttccacc agatcataaa ttttctgccg
    30961 gtcggtaaag gcaaagaaga ccggggtcat cgcgccgacg tcctgaataa aggtcgaaat
    31021 gtacagcaga tgactgttaa tgcggaacag ttcggagagc atcacgcgga tgacgttcac
    31081 acgatccggg acggtgatcc ccgccagttt ttctaccgcc agcacgtacg gcatttcatt
    31141 gacgcaacca ccgaggtatt cgatacggtc ggtataggga atgtagctat gccaggactg
    31201 gcgctcgccc attttttcgg cgccgcggtg gtgatagccg atatccggca cgcagtcgac
    31261 gatttcttcg ccgtcaagtt gcaggataat acgaaacgca ccgtgcgcag acgggtggtt
    31321 cgggccgagg ttgaggaaca taaagtcctc gttgtcagtc ccgcgcttca tcccccagtc
    31381 ttccggctta aaggtcaacg cttccatctc cagatcctgc ttggctttgg tcagctcaaa
    31441 cgggtcgaat tcggtcgcgc gcgccggata atctttacgc agcggatggc cttcccaggt
    31501 ttgcggcatc atgatgcgcg tcaggtgcgg gtggccttcg atatcaatgc caaacatctc
    31561 ccaggtctca cgctcgtacc agttggcgtt agggaaaagt ttagtgaagg tcggcacgcg
    31621 caggtcgttt tcagacaacg ccaccttgag cataatatcg cgattacgct caatggaaat
    31681 caggtggtag aaaacggaaa aatccgcggc gggtaacccg tcacggtgcg tacgcaggcg
    31741 ttcatccatg ccgtgtaagt caaacagcat gacgtaaggt ttcggcagtt tctttaagaa
    31801 atcgccaacc tccagtagtt gttcacgctt gacccaaaca acggggatac cggtgcgggt
    31861 cgcctgaacg gtaaaggcat ccggcccaaa acggttgcgc agttcgccga taaccggatc
    31921 atcaagatga tcgcgggtac tccatgcagc gtcttgcgcg gttaagtcgg tcatattgtt
    31981 caccattgca aatggtccgt ggtggtcggc agtgcttcgc gctattaaaa tagtggttag
    32041 cgaagtgaag tgctgctgcc gacaggcgca aattaaatct cgtccggggt acgcaggttc
    32101 gtgacggcaa tacgctcgcc gcgtttacgt tcgcgttctg gctgcatatt ggcgcgatac
    32161 acgccctgat cgcccaccac ccatgagagc ggacggcgct ctttgccaat cgattcttgc
    32221 agcagcatca acgcttgcat atacgcttcc ggacgcggcg gacagccagg gatatacaca
    32281 tccaccggga taaacttatc aacgccctgc actaccgaat aaatatcgta catgccgccg
    32341 gagttggcgc aggcgcccat agaaatgacc cattttggct ccagcatttg gtcatacaga
    32401 cgctgaataa ccggagccat tttggtaaag caggtaccgg ccaccaccat cagatcagcc
    32461 tgacgtggcg acgcacgcag cacttccgcg ccgaaacggg caacgtcatg cactgcggta
    32521 aacgaggtca ccatctctac atagcagcaa gaaaggccga agttgtaggg ccaaattgag
    32581 tttttacggc cccagttaac catgtcatgc agtttgccca tgaacacgtt tttgttaact
    32641 tcctgctcca gggggtcggt tacgatctcc tgtttttgca gggggtaacg gtcattctca
    32701 ccgttaggat ctatgcgggt gagcgtataa tccatcttaa tgcctcgcgg ttagcgttga
    32761 cgattagcga tactgttcgt ttccgggttc atacgctcgc ggcgtgaacg cgcgggcgtc
    32821 cagtccaacg cgccaatacg cgccagataa accagaccag ccagtaacac aaaaataaaa
    32881 attgcagctt ccacaaagcc aacccagccg ctttcgcgga tagaagttga ccatgcgaac
    32941 agatacagcg cttcaacgtc gaagataacg aagaacatgg ctaccaggta aaacttggca
    33001 gacaagcgta agcgggcggt gccgaccgag tcgatacctg attcaaacgg aacgttcttg
    33061 tgcctcgcgc gtgcgcgacc gcccaaaaac caaccgccta ccagcatcag gcagcacagg
    33121 ccaatggcaa cgataagaaa gatagcgaat gcccagtgat gagcgatgac ttcagtggat
    33181 gttgacatac tcattgctta ctcatcaaaa gtagcgccag ttcctctgct ctttacggca
    33241 gatggacgcc acatcgattc aggggaggaa taaaaaaacc ctacaattac tgtagaaaat
    33301 gataaaaaca gctaattgat gtggtttttt actcctttct ataacctttt gtcaacttta
    33361 acaaaagttc cttcacatta atttacatca attcatcatc attaacatta agtgccatcc
    33421 tggagaaaat gactcttcga ccagggggga ttttatgttg ttgaatcgtg tccgttgtga
    33481 agcaaaagaa ataacacaca cctattttga caggaatttg tgaagatgcc tccccctaaa
    33541 tgggagtatt ttcttgatct gtgacacgct tttgttaatt caccccctaa aacagcaaca
    33601 atttctctag ttttttaaca tgcaaattca taaaatggat gttctggtta ttttttgccc
    33661 acattgaact gcgaatcgct actggctgat ttaccgcaac ttttacaatt tgtgcggtta
    33721 agcgcgtaca gatgggcaca aaaaaagagc cactgagcgt tttttcatcg ccagcggctc
    33781 ttttttacat ttacgactta gcgccttttg cctgcgagct actcaaaacc cccttccacc
    33841 atcagcggat catctccgcc ctctgcagaa aactggttgt aatgccatgg gttttgatag
    33901 ctttccatcg catggaaaat caccatcgcc agctcgttct ggctattggg atcgcggcac
    33961 aacatatatt ccgtatccag caaaggcggt aatccatctg cggcgcccag cacgcgaagg
    34021 tcgggactca tcatttcgac aggtcgagcc gttacgccaa gaccggcttt aacggccgcg
    34081 cgtaccgcca gtaatgtaga ggccacatag gccagccgcc agggaatacc cgctgcattt
    34141 agcgtctcca gcaccatatc gcggaatggg ctgggatcgt ccagcaggac taatggtacg
    34201 ggctctcccc tttgcaaaac atactcagcc gcacaatacc aatgggtggg cgaggtccgc
    34261 aaattcagac agtccagcga atgaggttgg ttagtcgtca ccaccaaatc tacttcctgc
    34321 gatttaacca tgtccaccat ataggcgttg cgttttaccc gtacatcaag cgcgagtttc
    34381 ggataaaccg agctgattcg gctaagcaaa aaaggcagga tagtatcagc tgattcatca
    34441 gaagcgccga ttgttaacac tccctgaaga ttactgaaca ttaatgatga acacgcctca
    34501 tcattaaaac gcaggatttt tctggcgtac cccagaagct ggataccgtg ttcgctcaaa
    34561 agtttgttac gaccatggcg ggcgaacaat tcctttccca cgagttgctc aagacgctgc
    34621 atttgctgac tgaccgcaga ctgagtacga cataccgccg ccgccgccgc ggcgaaggtg
    34681 ttcagatcgg caacggccac gaacgttctc agcagatcga gatcgaggtt aattatcgga
    34741 cgatttgcat ttatcataat ttttcactta ctgacgggtc atatcgggct gacctggtta
    34801 atgctgtgca ttcagaaaca agcaattcca tttgtaatgt gcatccttcg cagtaccgcc
    34861 tggttaccca ggtaaatgtt agaatgtaat tgaaaatacg accaaaacac ttctcttact
    34921 tactgatata ataccaaatg caactgatcg ggatatatca aagagaatgt gtcatacctt
    34981 taggcgtct
//
LOCUS       DAJVSD010000018        32929 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.018, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000018 DAJVSD010000000
VERSION     DAJVSD010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 32929)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32929)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32929
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.018"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..870)
                     /gene="hemF"
                     /locus_tag="OQP62_000717"
     CDS             complement(<1..870)
                     /gene="hemF"
                     /locus_tag="OQP62_000717"
                     /EC_number="1.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-dependent coproporphyrinogen oxidase"
                     /protein_id="HCS1720350.1"
                     /translation="MKPDAHHVKQFLLRLQDDICQTLSAVDGANFIEDSWRREAGGGG
                     RSRVLRNGGIFEQAGVNFSHVHGDAMPASATAHRPELAGRSFEAMGVSLVVHPHNPYI
                     PTSHANVRFFIAEKPGADPVWWFGGGFDLTPYYGFEEDAVHWHRTARDLCQPFGDDVY
                     PRYKKWCDDYFFLKHRNEQRGIGGLFFDDLNTPDFDHCFAFMQAVGNGYTEAYLPIVE
                     RRKAMVWGERERNFQLYRRGRYVEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEY
                     DWQPEAGSPEAALS"
     gene            complement(873..1742)
                     /gene="amiA"
                     /locus_tag="OQP62_000718"
     CDS             complement(873..1742)
                     /gene="amiA"
                     /locus_tag="OQP62_000718"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiA"
                     /protein_id="HCS1720351.1"
                     /translation="MSTFKLLKTLTSRRQVLKTGLAALTLSGMSHAIAKEETLKTSNG
                     HSKPKTKKTGSKRLVMLDPGHGGIDTGAIGRNGSQEKHVVLAIAKNVRAILRNHGIDA
                     RLTRTGDTFIPLYDRVEIAHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMA
                     KYLSERENRADEVAGKKATDRDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPIHKL
                     HSRTTEQAAFVVLKSPSIPSVLVETSFITNPEEERLLGTTAFRQKIATAIANGIISYF
                     HWFDNQKAHTKKR"
     gene            1955..2380
                     /locus_tag="OQP62_000719"
     CDS             1955..2380
                     /locus_tag="OQP62_000719"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311332.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family acetyltransferase"
                     /protein_id="HCS1720352.1"
                     /translation="MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKVNHDVSL
                     FLVAEVSGEVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPK
                     IQIMVRDDNDVVLGMYERLGYEHSDALSLGKRLIEDEEY"
     gene            2367..2816
                     /locus_tag="OQP62_000720"
     CDS             2367..2816
                     /locus_tag="OQP62_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2919 domain-containing protein"
                     /protein_id="HCS1720353.1"
                     /translation="MKSTEFHPADYDVHGCLRLPFLFWCVLLLQARAWVLFVIAGSSR
                     GQGNTLLNFFYPDHDNFWLGLLPGVPAVVAFLLSGRREAVPGVWRWLRGLLILAQLVS
                     LCWLPVMWLGGDPVNGVGLALLLADIVALIWLLTNQRLRACFSLEKE"
     gene            2878..3453
                     /locus_tag="OQP62_000721"
     CDS             2878..3453
                     /locus_tag="OQP62_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpoE-regulated lipoprotein"
                     /protein_id="HCS1720354.1"
                     /translation="MKSLRLTLLALPLALTGCSTLSSVNWSAANPWNWFGSSTEVTEQ
                     GVGALTAATPLEEPAIAEALDGDYRLRSGMKTDNGNVVRFFEAMKGDSVAMVINGEQG
                     TVSRIDVLDSDIPTAAGGKIGTPFSDLYSKAFGHCEPVSSDSHTSVECKAEGSQHISY
                     VFSGEWSGPEGLMPPDDVLKNWDVRKIIWRR"
     gene            3548..4447
                     /gene="yfeX"
                     /locus_tag="OQP62_000722"
     CDS             3548..4447
                     /gene="yfeX"
                     /locus_tag="OQP62_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphyrinogen peroxidase"
                     /protein_id="HCS1720355.1"
                     /translation="MSQVQSGILPEHCRAAIWIEANVKGDLDALRAASRTFADKLATF
                     EVKFPDAHLGAVVAFGNNTWRALSGGVGAEELKDFIPYGKGLAPATQYDVLIHILSLR
                     HDVNFSVAQAAMEAFGDCIDVKEEVHGFRWVEERDLSGFVDGTENPAGEETRREVAVI
                     KDGVDAGGSYVFVQRWEHNLKQLNRMSIHDQEMMIGRTKEANEEIDGDARPATSHLSR
                     VDLKEDGKGLKIVRQSLPYGTASGTHGLYFCAYCARLHNIEQQLLSMFGDTDGKRDAM
                     LRFTKPVTGGYYFAPSLDRLLAL"
     gene            4684..5475
                     /gene="ucpA"
                     /locus_tag="OQP62_000723"
     CDS             4684..5475
                     /gene="ucpA"
                     /locus_tag="OQP62_000723"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase UcpA"
                     /protein_id="HCS1720356.1"
                     /translation="MGKLTGKTALITGASQGIGEGIARVFARHGANLILLDISDEIEK
                     LADELGGRGHRCTAVKADVRDFASVQAAVARAKETEGRIDILVNNAGVCRLGNFLDMS
                     EEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKA
                     AIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPDDPESVLTEMAKAIPL
                     RRLADPLEVGELAAFLASDESSYLTGTQNVIDGGSTLPESVSVGV"
     gene            5633..6649
                     /gene="cysP"
                     /locus_tag="OQP62_000724"
     CDS             5633..6649
                     /gene="cysP"
                     /locus_tag="OQP62_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate/sulfate ABC transporter
                     substrate-binding protein CysP"
                     /protein_id="HCS1720357.1"
                     /translation="MAVNLLKKRLLTLAAMLLLAGQAQATELLNSSYDVSRELFAALN
                     PPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKADVVTYNQVTDVQILHDKGKL
                     IPADWQSRLPNNSSPFYSTMGFLVRKGNPKNIHDWSDLVRSDVKLIFPNPKTSGNARY
                     TYLAAWGAADNADGGDKAKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFE
                     SEVNNIRKQYEAQGFEVVIPKTNILAEFPVAWVDKYVKANGTEKAAKAYLNWLYSPQA
                     QTIITHYYYRVNNPEIMGKQADKFPQTGLFRVEDKFGTWPEVMKTHFASGGELDKLLA
                     AGRK"
     gene            6649..7482
                     /gene="cysT"
                     /locus_tag="OQP62_000725"
     CDS             6649..7482
                     /gene="cysT"
                     /locus_tag="OQP62_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000458418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter permease
                     CysT"
                     /protein_id="HCS1720358.1"
                     /translation="MLAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLSQMSW
                     SQYWDVVTNPQVVAAYKVTLLAAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDL
                     PFALPTAVAGLTLASLFSVNGFYGQFLAQFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ
                     PVLEELGPEYEEAAQTLGATRLQSFRKVVLPELSPALIAGVALSFTRSLGEFGAVIFI
                     AGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRVVG
                     H"
     gene            7482..8357
                     /gene="cysW"
                     /locus_tag="OQP62_000726"
     CDS             7482..8357
                     /gene="cysW"
                     /locus_tag="OQP62_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter permease
                     CysW"
                     /protein_id="HCS1720359.1"
                     /translation="MAEVTQLKRYDVPRINWGKWFLIGVGMLVSAFILLVPMIYIFVQ
                     AFSKGLMPVLQNLADPDMLHAIWLTVLIALIAVPMNLVFGILLAWLVTRFNFPGRQLL
                     LTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQMMFSWPGMVLVTIFVTCPF
                     VVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEF
                     GAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRL
                     ENQEKRAQQEENHEH"
     gene            8347..9441
                     /gene="cysA"
                     /locus_tag="OQP62_000727"
     CDS             8347..9441
                     /gene="cysA"
                     /locus_tag="OQP62_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter ATP-binding
                     protein CysA"
                     /protein_id="HCS1720360.1"
                     /translation="MSIEIARIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTL
                     LRIIAGLEHQSSGHIRFHGTDVSRLHARERKVGFVFQHYALFRHMTVFDNIAFGLTVL
                     PRRDRPTAAAIKTKVTQLLEMVQLAHLADRFPAQLSGGQKQRVALARALAVEPQILLL
                     DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNIEQA
                     DAPDRVWREPATRFVLEFMGEVNRLTGTVRGGQFHVGAHRWPLGYTPAYQGPVDLFLR
                     PWEVDISRRTSLDSPLPVQVIEASPKGHYTQLVVQPLGWYHDPLTVVMAGDDVPQRGE
                     RLFVGLQNARLYHGDQRIEPHEALALAESA"
     gene            9562..10473
                     /gene="cysM"
                     /locus_tag="OQP62_000728"
     CDS             9562..10473
                     /gene="cysM"
                     /locus_tag="OQP62_000728"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase CysM"
                     /protein_id="HCS1720361.1"
                     /translation="MNTLEQTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRA
                     ALSMIVEAEKRGEIKPGDALIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA
                     MRAYGAELILVTKEQGMEGARDLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWR
                     QTSGRITHFVSSMGTTGTITGVSRFLREQEKTVTIVGLQPEEGSSIPGIRRWPTEYMP
                     GIFNASLVDEVLDIHQNDAENTMRELAVREGIFCGVSSGGAVAGALRVARATPGAIVV
                     AIICDRGDRYLSTGVFGEEHFSQGAGI"
     gene            complement(10506..10883)
                     /locus_tag="OQP62_000729"
     CDS             complement(10506..10883)
                     /locus_tag="OQP62_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000710726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfeK family protein"
                     /protein_id="HCS1720362.1"
                     /translation="MKKDFTMKKIVCAVVALLLTLPAWAKLNAHEEARINAMLNVLAQ
                     KKDLTFVRNGDAHNCEEAVSHLRLKLGNTRNRIDTAEQFIDKVASSSSITGKPYIVKI
                     PGKSDENAQPYLHALIAETDKTL"
     gene            complement(10942..11661)
                     /locus_tag="OQP62_000730"
     CDS             complement(10942..11661)
                     /locus_tag="OQP62_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP synthase"
                     /protein_id="HCS1720363.1"
                     /translation="MRVHFVIHESFESAGAYLKWAEDRGYTISWSRVYAGEALPPNAD
                     EFDMLVVFGGPQSPRTTREECPYFDSQAEQHLINQAISARKIVVGICLGSQLIGEALG
                     AKVCQSPEKEIGHYPIVLTEAGQQHPLFNHFGSPLIVGHWHNDMPGLTDQAIILATSE
                     GCPRQIVQYGNFVYGFQCHMEFTVEAVEGLIQHSQQELADAQGKRFIRSVAEMRAWNY
                     QQMNEKLWRFLDELTLAHSQK"
     gene            complement(11676..12968)
                     /gene="ptsJ"
                     /locus_tag="OQP62_000731"
     CDS             complement(11676..12968)
                     /gene="ptsJ"
                     /locus_tag="OQP62_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator PtsJ"
                     /protein_id="HCS1720364.1"
                     /translation="MIDGKTANEIFDSIRQHIIAGTLRAKDSLPPVRELASELKVNRN
                     TVAAAYKRLITAGLAQSLGRNGTVIKGSPSPVALEGGDPHTPLHDLSGGNPDPQRLPD
                     LSRYFARLSRTPHLYGDAPVSPELHAWAARWLRDATPVAGEIDITSGAIDAIERLLCA
                     HLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDSEGMQPEKLEQALNQGARAVILT
                     PRAHNPTGCSLSARRAAALQNILARYPQVLVIIDDHFALLSSSPWQPVIAQTTQHWAV
                     IRSVSKALGPDLRLAIVASDSSTSAKLRLRLNAGSQWVSHLLQDLVYACLTDPEYQHR
                     LAQTRLFYATRQQKLARALQQYGIAISPGDGVNAWLPLDTHSQATAFTLAKSGWLVRE
                     GEAFGVSAPSHGLRITLSTLNDGEINTLAADIHQALNR"
     gene            13051..13917
                     /gene="pdxK"
                     /locus_tag="OQP62_000732"
                     /gene_synonym="thiJ"
     CDS             13051..13917
                     /gene="pdxK"
                     /locus_tag="OQP62_000732"
                     /gene_synonym="thiJ"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine/pyridoxal/pyridoxamine kinase"
                     /protein_id="HCS1720365.1"
                     /translation="MGQESDIQSVLFDDNHRALQTDIVAVQSQVVYGSVGNSIAVPAI
                     KAQGLRVTAVPTVLFSNTPHYKTFYGGIIPAEWFAGYLTALNERDALRELKAITTGYM
                     GSADQIVLLSKWLMAIRASHPEVCILVDPVIGDTDSGMYVQAEIPQAYRTHLLPQAQG
                     LTPNVFELEMLSGKPCRTLEEAVAAAQSLLSDTLKWVVITSAPGESLETITVAVVTAQ
                     VVEVFAHPRVATELKGTGDLFCAELVSGIVQGKKLTTAAKDAAQRVLEVMTWTQQCGC
                     DELILPPAGEAR"
     gene            13914..14153
                     /locus_tag="OQP62_000733"
     CDS             13914..14153
                     /locus_tag="OQP62_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoplasmic protein"
                     /protein_id="HCS1720366.1"
                     /translation="MKSYRLVVRQQGRIVGHFETSGLDALEDICVARAMFGITGGYQC
                     ELQVSDSERRILESGPDGMKILMREKCFRPVTSQL"
     gene            complement(14303..14812)
                     /gene="crr"
                     /locus_tag="OQP62_000734"
     CDS             complement(14303..14812)
                     /gene="crr"
                     /locus_tag="OQP62_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015833547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HCS1720367.1"
                     /translation="MGLFDKLKSLVSDDKKDTGTIEIVAPLSGEIVNIEDVPDVVFAE
                     KIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGIELFVHFGIDTVELKGE
                     GFKRIAEEGQRVKVGDPVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVG
                     ETPVIRIKK"
     gene            complement(14853..16580)
                     /gene="ptsI"
                     /locus_tag="OQP62_000735"
     CDS             complement(14853..16580)
                     /gene="ptsI"
                     /locus_tag="OQP62_000735"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-protein phosphotransferase
                     PtsI"
                     /protein_id="HCS1720368.1"
                     /translation="MISGILASPGIAFGKALLLKEDEIVIDRKKISADKVDQEVERFL
                     SGRAKASAQLEAIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADA
                     AAHEVIEGQATALEELDDEYLKERAADVRDIGKRLLRNILGLAIIDLSAIQEEVILVA
                     ADLTPSETAQLNLQKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTAQVKNGDYL
                     ILDAVNNQVYVNPTNDVIEQLRAVQEQVATEKAELAKLKDLPAITLDGHQVEVCANIG
                     TVRDVEGAERNGAEGVGLYRTEFLFMDRDALPTEEEQFAAYKAVAEACGSQAVIVRTM
                     DIGGDKELPYMNFPKEENPFLGWRAVRIAMDRKEILRDQVRAILRASAFGKLRIMFPM
                     IISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKEVDFFS
                     IGTNDLTQYTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGD
                     ERATLLLLGMGLDEFSMSAISIPRIKKIIRNTNFEDAKVLAEQALAQPTTDELMTLVN
                     KFIEEKTIC"
     gene            complement(16629..16886)
                     /gene="ptsH"
                     /locus_tag="OQP62_000736"
     CDS             complement(16629..16886)
                     /gene="ptsH"
                     /locus_tag="OQP62_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein Hpr"
                     /protein_id="HCS1720369.1"
                     /translation="MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASA
                     KSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE"
     gene            complement(17270..18241)
                     /gene="cysK"
                     /locus_tag="OQP62_000737"
     CDS             complement(17270..18241)
                     /gene="cysK"
                     /locus_tag="OQP62_000737"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HCS1720370.1"
                     /translation="MSKIYEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCR
                     IGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRK
                     LLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPE
                     IWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGE
                     EIKPGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGA
                     AVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKELQQ"
     gene            complement(18614..19375)
                     /gene="cysZ"
                     /locus_tag="OQP62_000738"
     CDS             complement(18614..19375)
                     /gene="cysZ"
                     /locus_tag="OQP62_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter CysZ"
                     /protein_id="HCS1720371.1"
                     /translation="MVSSSTTVPRSGVYYFSQGWKLVTLPGIRRFVILPLLVNIVLMG
                     GAFWWLFTQLDAWIPSLMSHVPDWLQWLSYLLWPIAVISVLLVFGYFFSTLANWIAAP
                     FNGLLAEQLEARLTGATPPDTGILGIMKDVPRIMKREWQKLAWYLPRAIVLLVLYFIP
                     GIGQTIAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKTMRAALRTQKVANMQFGALTSL
                     FTMIPVLNLFIMPVAVCGATAMWVDCWRAKHALWK"
     gene            19607..20593
                     /gene="zipA"
                     /locus_tag="OQP62_000739"
     CDS             19607..20593
                     /gene="zipA"
                     /locus_tag="OQP62_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HCS1720372.1"
                     /translation="MMQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRM
                     KSKRDDDSYDDDVEEDEGVGEVRVHRVNHAPGQSQEHDAPRQSPQHQYQPPYASAQPR
                     PAAPPQPQAPMQQPVQQPVQPAPQPQQVQPSAPPVQPPQQQPAPPSQAPQPVAQPAPP
                     PSAQTFQPAEPVVEAEPVVEEAPVVEKPQRKEAVIIMNVAAHHGSELNGEVLLNSIQQ
                     SGFKFGDMNIFHRHLSPDGSGPALFSLANMVNPGTFDPEMTDFTTPGVTIFMQVPSYG
                     DALQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDRIREVMDANA"
     gene            20665..22680
                     /gene="ligA"
                     /locus_tag="OQP62_000740"
     CDS             20665..22680
                     /gene="ligA"
                     /locus_tag="OQP62_000740"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HCS1720373.1"
                     /translation="MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRE
                     LEAQRPDLITPDSPTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL
                     KSTENVIWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH
                     GDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKR
                     PLTFFCYGVGILEGGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKD
                     RPTLGFDIDGVVIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRT
                     GAITPVARLEPVQVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVL
                     SERPEETRPIVFPTHCPVCGSDVERVEGEAVTRCTGGLICGAQRKESLKHFVSRRAMD
                     VDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGLDRMGPKSAQNVVNALEKAKATTF
                     ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAE
                     ESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVLTGSLSQMSRDDAKARLVAL
                     GAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLGA"
     gene            22682..22900
                     /locus_tag="OQP62_000741"
     CDS             22682..22900
                     /locus_tag="OQP62_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3820 family protein"
                     /protein_id="HCS1720374.1"
                     /translation="MEKEQLLEIANTVMPFGKYQGRRLIDLPEEYLLWFARKDQFPAG
                     KLGELMQITLLIKTEGLTQLVQPLKRPL"
     gene            complement(22897..23895)
                     /locus_tag="OQP62_000742"
     CDS             complement(22897..23895)
                     /locus_tag="OQP62_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461360.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter"
                     /protein_id="HCS1720375.1"
                     /translation="MKLFRILDPFTLTLITVVLLASFFPAEGGFVPVVEGITTAAIAL
                     LFFMHGAKLSREAIIAGGSHWRLHLWVMCSTFVLFPVLGVLFAWWAPVNVDPMLYSGF
                     LYLCILPATVQSAIAFTSLAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNIHGAQGS
                     LEEVGKIMLQLLLPFVLGHLSRPWIGNWVARNKKWIAKTDQTSILLVVYSAFSEAVVN
                     GIWHKVGWGSLLFIVVVSLILLAIVIAINVFVARKCGFNKADEITIVFCGSKKSLANG
                     IPMANILFPTSVLGMMVLPLMIFHQIQLMVCAGLARRYKRQTEKLQAQQESRAAKA"
     gene            23985..24911
                     /locus_tag="OQP62_000743"
     CDS             23985..24911
                     /locus_tag="OQP62_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1720376.1"
                     /translation="MNYSLRQLRIFITVAQAKSFSRAGDRIGLSQSAVSHSVKELERQ
                     TGVRLLDRTTREVVLTEAGQQLATRLERVLDELNSILRDAGRVGTQLTGTVRVAASQT
                     ISAHLIPQCIAQSNSLYPAIDFVLHDRPQQWVLESIRQGEVDFGIVIDPGAAVDLQCE
                     AILSEPFLLLCRQDHPLAHQEWVSWQDLKQASLVLQDYASGSRPLIDAALAHFAIEAD
                     IVQEIGHPATLFPMVEAGIGISVLPALALPLPQGSHLQVKRLTPVVERQLMLARRKNR
                     SLSTAAQALWDVVRTQASELTAARAKDPLYQL"
     gene            complement(24973..25734)
                     /locus_tag="OQP62_000744"
     CDS             complement(24973..25734)
                     /locus_tag="OQP62_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720377.1"
                     /translation="MKKILTLTLSSLLIIPALTHAEFKGGFADIGLHYLDWTSDTTEK
                     TSKKSHKDDFGYLELEGGANFSWGEMYGFFDWENFYNGRHAKPSSEQRYTFKNTNRIY
                     LGDTGLNLYLHAYGTYGSPHRANFHDDMFLYGLGYNFTGNGYWFKPFFAKRYTDQTYY
                     TGDNGYVLGWVAGYSFSLGSEKFSVTNWNEYEFDRDASYAAGNGGKDGINGAVALWWN
                     ATPHLTAGVQYRYADNKLGESFLQDGIIYSIKYLF"
     gene            25990..26823
                     /gene="xapA"
                     /locus_tag="OQP62_000745"
     CDS             25990..26823
                     /gene="xapA"
                     /locus_tag="OQP62_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_448816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthosine phosphorylase"
                     /protein_id="HCS1720378.1"
                     /translation="MPHALFSHNPEYCIDIIHAHKPAFTPRVAFILGSGLGALADQIE
                     DAVAISYEKLPGFPVSTVHGHAGELVLGHLAGVPVACMKGRGHFYEGRGMAVMTDAIR
                     TLKLLGCEVLFCTNAAGSLRPEVGPGSLVALSDHINTMPGTPMVGPNDDRYGDRFFSL
                     ANAYDADYRAMLQSVAAEKGFPLTEGVFVSYPGPNFETAAEIRMMQIIGGDVVGMSVV
                     PEVISARHCGLKVVAVSAITNLAEGLGDVKLSHAQTLAAAELSRQNFINLICGFLRKL
                     A"
     gene            26878..28134
                     /locus_tag="OQP62_000746"
     CDS             26878..28134
                     /locus_tag="OQP62_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease"
                     /protein_id="HCS1720379.1"
                     /translation="MGITSRLKVMSFLQYFIWGSWLVTLGSYMINTLDFTGANVGMVY
                     SSKGLAAIIMPGIMGIIADKWLRAERAYMLCHLVCAGALLYATTVTDPQTMFWVMLVN
                     AMAYMPTIALSNSVSYSCLAKAGQDPVTSFPPVRVFGTIGFIVAMWTVSLMGLELSSA
                     QLYIASGASLLLALYALTLPKIPVAEKKANTTLVSKLGLDAFVLFKNPRMAIFFLFAM
                     MLGAVLQITNVFGNPFLHDFARNPEFADSFVVKYPSILLSVSQMAEVGFILTIPFFLK
                     RFGIKTVMLMSMLAWTLRFGFFAFGDPSPFGFVLLLLSMIVYGCAFDFFNISGSVFVE
                     QEVDSSIRASAQGLFMTMVNGVGAWIGSLLSGMAVDYFSIDGVKDWQTIWLVFAAYAL
                     ALAVIFALFFKYQHHPEKLSTKSLAH"
     gene            28193..28351
                     /locus_tag="OQP62_000747"
     CDS             28193..28351
                     /locus_tag="OQP62_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000658729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1427 family protein"
                     /protein_id="HCS1720380.1"
                     /translation="MKEIILSSGIGFGIGAFFTLCRIPIPAPNVLPGVLSIVFMYIGY
                     LVVKSIFY"
     gene            28403..29287
                     /locus_tag="OQP62_000748"
     CDS             28403..29287
                     /locus_tag="OQP62_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1720381.1"
                     /translation="MERAHRIDLKLLRYFLAVAEELHFGRAAARLNMSQPPLSIHIKE
                     LEQQLGTLLFIRHSRSVALTHAGKVLMEESRRLLANANQALARVEQIGRGEAGRIELG
                     VVGTALWGRMRPAMRHFLKANPNVEVLFREKSPGMQMALLERRELDAGIWRMAIEPAV
                     GFTSIRLHESAFMVAVPEDHDLASRDSVPLSALRNEYFVTLPSVHSDWGFLQRVCQQA
                     GFSPMIIREVVEPQTVLAMISMGIGITLMADGYAQMSWPGVVFRPLEERIPADLYIVY
                     DQQQATPALEKLVAALTV"
     gene            complement(29450..29525)
                     /locus_tag="OQP62_000749"
     tRNA            complement(29450..29525)
                     /locus_tag="OQP62_000749"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(29490..29492),aa:Lys,seq:ttt)
     gene            complement(29530..29605)
                     /locus_tag="OQP62_000750"
     tRNA            complement(29530..29605)
                     /locus_tag="OQP62_000750"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(29570..29572),aa:Val,seq:tac)
     gene            complement(29647..29722)
                     /locus_tag="OQP62_000751"
     tRNA            complement(29647..29722)
                     /locus_tag="OQP62_000751"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(29687..29689),aa:Val,seq:tac)
     gene            complement(29768..29843)
                     /locus_tag="OQP62_000752"
     tRNA            complement(29768..29843)
                     /locus_tag="OQP62_000752"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(29808..29810),aa:Val,seq:tac)
     gene            30102..31517
                     /gene="gltX"
                     /locus_tag="OQP62_000753"
     CDS             30102..31517
                     /gene="gltX"
                     /locus_tag="OQP62_000753"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HCS1720382.1"
                     /translation="MKIKTRFAPSPTGYLHVGGARTALYSWLFARHHGGEFVLRIEDT
                     DLERSTPEAIEAIMDGMNWLNLEWDEGPYFQTKRFDRYNAVIDEMLEAGTAYKCYCSK
                     ERLEQLREDQMAKGEKPRYDGRCRHSHEHHADDEPCVVRFANPQDGSVIFDDQIRGPI
                     EFSNQELDDLIIRRTDGSPTYNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALN
                     APVPMYAHVSMINGDDGKKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWSSGDQEI
                     FTREEMIKLFSLGAVSKSASAFNTDKLLWLNHHYINTLAPEYVATHLQWHIEQENIDT
                     RNGPQLAELVKLLGERCKTLKEMAQSCRYFYEDFSEFDADAAKKHLRPVARQPLEVVR
                     DKLSAITDWSAENVHHAIQATADELEVGMGKVGMPLRVAVTGAGQSPALDVTVHAIGK
                     TRSIERINKALGFIAERESQQ"
     gene            complement(31571..31963)
                     /locus_tag="OQP62_000754"
     CDS             complement(31571..31963)
                     /locus_tag="OQP62_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding transcriptional regulator"
                     /protein_id="HCS1720383.1"
                     /translation="MKRLRSKMTTEELAECLGVARQTVNRWIREQHWKTEKFPGVKGG
                     RARLIHIDASVREFILNIPAFRKLPAFYQAEEAFAEYANATHSHAYRQIIDAVENMSA
                     QEQEKLALFLSREGIRGFLTRLGINEAD"
     gene            complement(31965..32327)
                     /locus_tag="OQP62_000755"
     CDS             complement(31965..32327)
                     /locus_tag="OQP62_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding transcriptional regulator"
                     /protein_id="HCS1720384.1"
                     /translation="MFKERMTPEELANLTGYSRQTINKWVRKEGWATSPKPGVQGGKA
                     RLVHVNEQVREYIRSAERSVDHHADTFTPASNASLEALLMTLAKEMTSSEQKQFTSLL
                     VREGITGLLQRLGIRDSK"
     gene            32549..32624
                     /locus_tag="OQP62_000756"
     tRNA            32549..32624
                     /locus_tag="OQP62_000756"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32582..32584,aa:Ala,seq:ggc)
     gene            32667..32742
                     /locus_tag="OQP62_000757"
     tRNA            32667..32742
                     /locus_tag="OQP62_000757"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32700..32702,aa:Ala,seq:ggc)
BASE COUNT         7468 a         8277 c         9170 g         8014 t
ORIGIN      
        1 gctcagcgcc gcttccgggc tacccgcttc cggctgccag tcgtactccc agcgcaccag
       61 cggcggcatc gacatcagga tagattcagt gcgcccgccg gtttgcagac caaacagggt
      121 gcctctgtcc cataccagat tgaactccac gtagcgaccg cggcgataaa gttgaaaatt
      181 acgctcccgc tctccccaga ccatcgcttt gcgtcgttcg acaatcggta aatacgcctc
      241 ggtgtagccg ttaccgaccg cctgcataaa agcaaaacag tggtcgaaat ccggcgtatt
      301 caaatcgtca aaaaacaggc cgccgatacc gcgctgctcg ttacgatgct tgaggaaaaa
      361 gtagtcatcg caccactttt tatagcgcgg atacacatcg tcgccaaacg gctggcacag
      421 gtcgcgggcg gtgcggtgcc agtgaacggc atcctcttca aagccgtagt agggcgttaa
      481 atcgaacccg ccgccaaacc accacaccgg atcggcgccc ggtttttcgg caataaaaaa
      541 gcgcacgtta gcatggctgg tgggaatata cggattgtgc ggatgcacca ccagcgatac
      601 gcccatcgct tcaaaactac gcccggccag ttctggccga tgtgcggtgg cggacgcggg
      661 cattgcatcg ccgtgaacgt gagagaaatt aacgcccgcc tgttcgaaaa ttccgccgtt
      721 gcgtaatacc cggctgcgtc cgccgccgcc cgcttcgcgt cgccagctat cttcgataaa
      781 gtttgcgcca tccacagcgg ataacgtttg gcaaatatca tcctgcaggc gtagcagaaa
      841 ctgttttacg tgatgtgcat cgggtttcat gattaccgtt tcttcgtgtg tgctttctga
      901 ttatcaaacc agtgaaaata actgatgatg ccgttggcga tcgccgtagc gattttctgg
      961 cgaaacgccg tcgtgcccag caggcgttct tcttccggat tggtaataaa cgaggtttcg
     1021 accagtaccg acggaattga cggtgatttt agcaccacga aagccgcttg ttcggtagtg
     1081 cggctgtgta atttatgtat gggtttgatt ttcttgagaa tatgcgaacc cagcgtcaga
     1141 ctgtttttaa tcgtatcggt ttgcaccaga tcaaacaaaa cttgttgtaa tagatgatcc
     1201 cggtcagtgg cttttttacc cgccacttcg tccgcgcggt tttcacgctc ggagagatac
     1261 ttcgccatgg cgctactggc cccgcggttg gaaagcgcaa aaacggaagc gcccgccgct
     1321 ttcggattgg taaaaccatc ggcatgaata gacataaaca gatccgcgcc gtgcttatgg
     1381 gcgatttcca cccgatcgta cagcggaata aaggtatccc ctgtccgggt taaacgcgca
     1441 tcgattccgt gatttcgcaa aatagcgcgt acgtttttgg caattgccag tacgacgtgt
     1501 ttttcctgag aaccgttgcg gccaatcgcg ccggtatcga tgccgccgtg tccggggtcg
     1561 agcatcacca accgtttact gccggttttt ttggttttgg gtttgctgtg accattactg
     1621 gtttttagcg tttcttcttt ggctattgcg tgcgacatac ctgacagcgt cagggccgcc
     1681 agacctgttt tgagtacctg gcggcgcgat gtgagagttt ttaggagttt aaaagtgctc
     1741 atacggcctg agttgtgaaa attaagttca agatgttata tcgtatcgcg taatccgtta
     1801 cgacggttgg tgatgagaat tgttttactt ttcatttcaa tacgtgacac atcgccatta
     1861 tgccattttt tccgctacat cgcgtcagat attggctgaa tcagatgttt gcgccataat
     1921 cttggttttt ccacccgaaa aggcaacgaa taccatggaa atacgcgttt ttcgccagga
     1981 agatttcgaa gaggtgatta ccctctggga gcgttgcgac ctgctgcgtc catggaacga
     2041 tcctgaaatg gatattgaac gcaaggtgaa tcacgatgtc agcttgttcc tcgttgcgga
     2101 agttagcggc gaagtcgtcg gtacggtaat gggcggttat gacgggcatc gcggctcggc
     2161 gtattacctg ggcgttcacc cggagttccg cgggcgcggc attgcgaatg cgctgcttaa
     2221 ccggctggaa aaaaaactca tcgcccgcgg gtgtccgaaa atccaaatta tggtgcgtga
     2281 tgataacgac gttgtgctgg gcatgtatga acgtctgggg tatgagcatt ctgacgccct
     2341 aagtttgggt aaacgcctga ttgaagatga agagtactga gtttcatcca gccgattatg
     2401 atgtacacgg atgtttacgc ctgccgtttc tgttctggtg cgtactgcta cttcaggcgc
     2461 gcgcctgggt actctttgtc attgccggtt catcccgtgg acagggtaat actttgttaa
     2521 acttttttta tcccgaccat gataattttt ggctggggct gttgcccggc gttccggcgg
     2581 tagtggcgtt tttactcagc gggcggcgtg aagcggttcc tggtgtgtgg cgctggctgc
     2641 gcggactcct gatcctcgct caactggtgt cgttgtgctg gctgccggtg atgtggctgg
     2701 gtggcgaccc ggtcaacggc gtcgggctgg cgctgctgct ggcggacatc gtcgcgctga
     2761 tctggctgtt aaccaatcaa cgtttgcgtg cctgtttttc ccttgagaaa gaataacggc
     2821 actttttggc gaacccgtac tccaaccaac gttaattaat aaaagaaagg aagtgagatg
     2881 aaatcgctgc gtttgacttt actcgcactg ccgctggcgc tgaccggctg ctcgacgctc
     2941 tcctcggtca actggtctgc cgcaaatcca tggaactggt ttggttcctc gacagaagtc
     3001 actgagcaag gcgtgggagc gctgaccgcc gccacgccgc tggaagagcc ggctattgca
     3061 gaggcattag atggcgatta tcgcctgcgt agcggtatga aaaccgataa cggcaacgtg
     3121 gtgcgctttt tcgaagcgat gaagggcgac agcgtcgcga tggtgatcaa cggcgagcag
     3181 ggaaccgtga gccgtattga tgtgctggac agcgatatcc caaccgccgc ggggggcaaa
     3241 atcggtacgc cgtttagcga cctttacagc aaagcgtttg gtcactgcga gccggtttcc
     3301 agcgatagcc ataccagcgt cgaatgtaaa gccgagggaa gtcagcatat tagctatgtt
     3361 ttctccggcg agtggagcgg accggaaggc ttaatgcctc ctgatgacgt cttaaaaaac
     3421 tgggacgtgc gcaaaattat ctggcgtcgt taatttgcgc ctgaacaaac cgcttcgctt
     3481 aaaaacaagg taaaataacc tccattaatg ccacgactgc gtggcattct cattttcagg
     3541 aggaatcatg tctcaggttc aaagtggcat tttgccggaa cattgccgtg cggcaatttg
     3601 gattgaagcc aatgtaaaag gcgacctgga cgccctgcgc gcggccagca gaacatttgc
     3661 cgataaactg gcgaccttcg aagtcaaatt tccggacgcc catcttgggg ccgttgtggc
     3721 gtttggcaac aatacctggc gtgccctgag tggcggcgtc ggggcggaag aactgaaaga
     3781 ttttattcct tatggtaaag ggctggcgcc agccacgcag tatgacgtgc tgatccatat
     3841 cctttccctg cgccacgatg tgaatttttc tgttgctcag gcggcgatgg aagccttcgg
     3901 cgactgtatc gacgtgaaag aagaagttca cggcttccgt tgggtggaag aacgcgatct
     3961 gagcggcttt gtcgacggga cagagaaccc ggcgggcgaa gagacgcgtc gtgaagtggc
     4021 ggtgatcaaa gatggcgtgg atgccggcgg cagttatgtg ttcgtgcagc gttgggaaca
     4081 caatctcaag caacttaacc ggatgagtat tcacgatcag gagatgatga tcgggcgtac
     4141 caaagaagcc aatgaagaga ttgacggcga tgcgcgtccg gcaacatctc acctgagccg
     4201 cgtcgatctc aaagaagatg gcaaagggct gaagattgtg cgtcagagcc tgccatacgg
     4261 caccgccagc ggtactcatg gtctctattt ctgcgcttac tgcgcacgcc tgcacaatat
     4321 cgaacagcag cttctgagta tgttcggcga taccgacggt aaacgcgacg caatgctgcg
     4381 cttcaccaaa ccggtgactg gcggctacta ttttgcgccg tcgctggatc gcctgttagc
     4441 gctataagta aaaccctgtc ggatggcagc gcaaacgctt tattcgacct acgattggta
     4501 ggcctgacaa gcgccgcgcc atcaggcaga acagcataaa aatgcccatc cccgcctccg
     4561 cggggatttt tttacctaat atttacctga attagtgagc tattcctcag cacttatttg
     4621 ttattactgt attttcagtg ttaatggagt gtaagactcc atattcaaaa ggagacattg
     4681 aaaatgggta aactcacggg caagacagca ttgattacgg gcgcatcgca gggcattggc
     4741 gaagggatcg ctcgcgtatt cgcacgccac ggcgcgaact taatcttgct ggatatctcc
     4801 gatgagattg aaaagctggc ggatgagctg ggcgggcgcg ggcatcgctg tactgccgtt
     4861 aaagccgacg tcagagattt tgcttcggtg caggcggcgg ttgcgcgcgc caaagagact
     4921 gaaggtagaa ttgatatttt ggtgaataac gctggcgtgt gccgtctggg caacttcctc
     4981 gatatgagtg aagaagatcg cgatttccac attgatatta atattaaagg tgtctggaac
     5041 gtcaccaaag ccgtcctgcc ggagatgatc aaacgtaaag atggccgcat tgtgatgatg
     5101 tcttccgtca cgggagatat ggtggcggac ccgggtgaaa cggcctatgc gctgtcaaaa
     5161 gccgccattg tcggtttaac caaatcgctg gcggtagagt acgcgcagtc cggtattcgt
     5221 gtgaatgcca tttgccccgg ttatgtaaga acgccgatgg cggaaagcat tgcccgtcag
     5281 tctaaccctg acgatccgga atcggtatta acggaaatgg caaaagccat tccgctacgc
     5341 cgtcttgccg atccgctgga agtaggggaa ctggcggcat ttctggcttc cgatgagtcc
     5401 agctatctta ccggaacgca aaacgtcatt gatggcggca gtaccctgcc tgaaagcgta
     5461 agcgtaggcg tctgattgat gccggtctcc tcctcacgcc gcgtggggag ggattctctt
     5521 attccctttt caactttcaa atcatcaaac ggtatataaa accgttactc ctttagcgct
     5581 ggttataaat atgatgacca taagaaagtc attaaattta taagggtgcg caatggccgt
     5641 taacttactg aaaaagagac tcctgacgct ggcagcaatg ctgttactgg cagggcaggc
     5701 gcaggcaacg gagctgctga acagctcata cgatgtctcc cgcgagctgt ttgccgccct
     5761 taacccgccg tttgagcaac aatgggcgaa ggataacggc ggcgataagc tgacgattaa
     5821 gcagtctcat gccgggtcat caaaacaggc gctggcgatt ttgcagggac tgaaggcaga
     5881 cgtcgtgacc tacaatcagg tgaccgacgt acagattctt catgataaag gcaaactgat
     5941 ccctgccgac tggcaaagcc gtctgccgaa caacagttcg ccattctatt ccactatggg
     6001 cttcctagtg cgcaagggga acccgaaaaa tattcacgac tggagcgatc ttgtacgttc
     6061 cgacgtgaag ctgattttcc ctaacccgaa aacctccggc aacgcccgtt acacgtatct
     6121 ggcggcatgg ggcgcggcgg ataacgcgga cggcggcgat aaagccaaaa ccgaacagtt
     6181 tatgacccag ttcctgaaaa acgtcgaagt gtttgatacc ggcggtcgcg gcgctacgac
     6241 tacctttgcc gagcgtggtc tgggcgatgt gctgattagt tttgaatcgg aagtgaacaa
     6301 catccgcaaa caatatgaag cccagggatt tgaagtggtg atcccgaaaa cgaacattct
     6361 tgctgaattc ccggttgcct gggtggataa atacgtgaag gccaacggca cagaaaaagc
     6421 cgccaaagct tacctgaact ggctgtatag cccgcaggcg cagaccatca ttacccatta
     6481 ctactaccgc gtgaataacc cggaaatcat gggcaagcaa gcagataaat tcccgcaaac
     6541 cggactgttc cgcgtggaag acaagtttgg cacgtggcct gaggtgatga aaacgcactt
     6601 tgccagcggc ggcgagctgg acaaactgtt ggcggcgggg cgtaagtaat gcttgccgtt
     6661 tcttcccgac gcgtgctgcc cggctttacg ttaagcctcg gcaccagttt gctgtttgtc
     6721 tgcctgatcc tgctgttgcc gttgagcgcg ctggtgatgc agctctcaca gatgagctgg
     6781 tcgcaatact gggatgtcgt gaccaaccca caggtggtgg ctgcttataa agtgacgctg
     6841 ctggcggcat ttgtggcgtc gatttttaat ggcgtgtttg gcctgctgat ggcgtggatt
     6901 ttaacccgct accgttttcc agggcgcacg ttactggatg cgctgatgga tctgccattt
     6961 gcgctgccga cagcggtggc ggggttaacg ctggcctcgc tgttctcagt gaacggtttc
     7021 tacggtcagt ttcttgcgca gtttgatatc aaagtgacct atacctggct cggtattgcg
     7081 gtggcgatgg cctttaccag cattccattt gtggtgcgca ccgtccagcc ggtactggaa
     7141 gagctggggc cggaatatga agaagcggca caaacgctgg gggccacccg cctgcaaagt
     7201 tttcgcaaag tcgtgctgcc tgagctgtcg cctgcgctga ttgccggcgt ggcgctctct
     7261 tttacccgta gcctgggcga gtttggcgcg gtgattttta tcgccggaaa tatcgcctgg
     7321 aaaacagaag tgacctcgct gatgattttt gtgcgtttgc aggagtttga ttacccagct
     7381 gccagcgcca ttgcctcggt gatccttgcg gcatcactgc tgctgctgtt ctcaattaac
     7441 actctgcaaa gtcgctttgg tcgacgtgtg gtaggtcatt aatggcggaa gtgactcaat
     7501 tgaagcgata cgacgtcccc cgtattaact ggggaaaatg gtttttgatt ggcgtcggga
     7561 tgctcgtttc ggcctttatc ctgctggtgc cgatgattta catcttcgtg caggcgttca
     7621 gcaaagggtt aatgccggta ctgcaaaatc tggccgatcc ggacatgctg cacgccatct
     7681 ggctgacggt gttgattgcc ttgatcgcag tgccgatgaa tctggtgttc ggtattctgc
     7741 tggcgtggct ggtgacgcgc tttaacttcc ccggacgtca gctactgctg accctgctgg
     7801 atattccctt tgccgtctca ccggtggtgg ccggtctggt ttatctgttg ttttatggtt
     7861 ccaacggccc gttgggcggc tggctggatg agcataattt gcaaatgatg ttctcctggc
     7921 cggggatggt actggtcact atttttgtca cctgcccgtt tgtggtgcgc gaactggtgc
     7981 cagtgatgct cagccagggc agccaggaag atgaggcggc gattttactg ggcgcatccg
     8041 gctggcaaat gtttcgccgc gtgacgttgc cgaatattcg ctgggcgcta ctctacggcg
     8101 tggtattaac caacgcccgc gcgattggcg agtttggcgc ggtgtcggtg gtgtccggct
     8161 cgattcgcgg cgaaacgtta tcgctaccgt tacagattga attactggag caggactaca
     8221 acaccgtcgg ctcctttacc gccgccgcat tgttgacgct aatggcgatt attaccctgt
     8281 ttttgaagag catgttgcaa tggcgtctgg agaatcagga aaaacgcgcg caacaggagg
     8341 aaaatcatga gcattgagat cgccagaatt aagaaatcgt ttggtcgcac tcaggtactg
     8401 aatgatatct cgctggatat tccttccggc cagatggttg ccttgttggg gccgtctggt
     8461 tccggcaaaa cgacgctgct gcgcattatt gccgggctgg aacatcagtc cagcggccat
     8521 attcgtttcc acggtacgga cgttagccgc ctgcacgcgc gtgagcgtaa agtcggtttt
     8581 gtgtttcagc actatgcgct gtttcgccat atgacggtgt ttgacaacat cgcttttggc
     8641 ctgacggtgc tgccgcgacg cgaccgccca actgcggcgg ctattaaaac gaaagtgacg
     8701 caattgctgg agatggtgca actggcgcac ctcgcggatc gcttccccgc ccagctttcc
     8761 ggcggacaaa aacagcgcgt ggcgctggcg cgcgcgcttg ccgtagaacc gcaaattcta
     8821 ctgctggatg aaccgtttgg cgcgctggat gcccaggtac gtaaagagtt acgtcgctgg
     8881 ttgcgccagc tacatgaaga actgaaattc accagcgtct ttgtcaccca cgatcaggaa
     8941 gaagcgacgg aagtggcgga tcgggtggtg gtaatgagtc agggcaatat cgaacaggct
     9001 gacgcgccgg atcgggtgtg gcgtgaaccg gcaacccgct tcgtactgga gtttatgggc
     9061 gaggtgaacc gcctgacagg caccgtccgc ggcgggcagt ttcacgttgg cgcgcatcgc
     9121 tggccgctgg gttatacgcc cgcgtaccaa gggccggtcg atctgttcct gcgtccgtgg
     9181 gaggtggata tcagccgccg caccagcctg gattctccgc taccagtaca ggtcattgag
     9241 gcaagcccga aaggtcacta tacacagtta gtggtacagc cgctggggtg gtatcacgat
     9301 ccgctgacgg tggtgatggc gggtgacgac gtcccgcagc gcggcgagcg tttgtttgtc
     9361 ggcttacaga acgcacgtct ctatcatggc gaccagcgta ttgagcccca tgaggcgctt
     9421 gctcttgcgg agtctgcctg ataggttaat ttgcatagtt atcgcccggt ggcgcttcgc
     9481 ttaccgggcc tacagcgtat atcgtgattt tgtaggccgg gtaagcacag cgccacccgg
     9541 catttttatt gagctgaaaa cgtgaataca ttagaacaaa ccatcggcaa tacgccgctg
     9601 gtcaaattac aacggctggg gccggataac ggcagtgaaa tctgggtcaa gctggaaggc
     9661 aataatccgg caggatcggt gaaagatcgc gcggcgctat cgatgattgt cgaggcggaa
     9721 aagcgcgggg aaattaaacc gggcgatgcc ctgattgaag cgaccagcgg caacactggc
     9781 attgcgctgg cgatgatcgc cgcgctgaaa ggttatcgca tgaagctgtt gatgccggac
     9841 aacatgagcc aggagcgtcg ggcggcaatg cgggcctatg gcgcggaact gattctggtc
     9901 actaaagagc agggaatgga aggggcgcgc gatttagcgc tcgctatgtc tgagcgcgga
     9961 gaaggtaaac tgctcgatca gtttaataat cctgataatc cctacgccca ctacacgacc
    10021 accggcccgg aaatctggcg gcaaacgtca ggtcgcatca cccattttgt ctccagcatg
    10081 ggcacgaccg gcaccattac cggcgtgtcg cgttttctgc gcgagcagga aaaaacggtc
    10141 accatcgttg gcctgcaacc ggaagagggc agcagtattc cgggcattcg ccgctggcct
    10201 acggaatata tgccgggcat atttaacgcc tcgctggtgg atgaggtgct ggatattcat
    10261 cagaatgatg ccgaaaacac catgcgtgaa ctggcggttc gtgaagggat tttctgcggc
    10321 gtcagctccg gcggcgcggt agcgggcgcg ttacgcgtcg cacgagccac gcccggcgcg
    10381 atagtggtgg cgatcatctg cgatcgcggc gaccgttact tgtctaccgg cgtgtttggt
    10441 gaagagcatt tcagccaggg ggcagggatt taaacgaggt gccatcgtcg tatgacaccc
    10501 gtgtgttata gcgttttatc cgtttccgca ataagtgcat gtaaataagg ctgcgcgttt
    10561 tcatcgcttt taccaggaat tttaacgata tagggttttc cggtgatgga cgacgacgac
    10621 gcgactttat cgataaactg ttcagcggtg tcgatacgat tgcgcgtgtt acccagtttt
    10681 aagcgcaggt gcgatacggc ttcctcgcag ttatgcgcat caccgttacg aacgaaggtc
    10741 agatcctttt tctgcgccag cacattaagc atggcgttaa tgcgcgcttc ttcatgggcg
    10801 tttagcttcg cccaggcggg gagggtcagc aggagcgcga cgacggcgca gacaattttc
    10861 ttcatggtaa aatccttttt catgcaataa tcactgcacc tcagaccgtt agccgggtaa
    10921 taagttgcac tcctggtgtg gttatttctg tgagtgcgcc agcgtgagtt catccagaaa
    10981 acgccacagc ttttcattca tctgctgata attccatgcg cgcatctcgg cgaccgagcg
    11041 gataaaacgc ttcccttgcg cgtcggccag ctcctgctgc gaatgttgga ttaatccttc
    11101 aaccgcctcg acggtaaatt ccatatgaca ctggaagccg tagacaaaat tgccgtactg
    11161 cacgatttgt cgcgggcagc cctcactggt agcaagaatt atcgcctggt cggttaaccc
    11221 cggcatgtcg ttatgccagt gaccgacgat aagcggggag ccgaaatggt tgaacagcgg
    11281 gtgctgttgg cctgcctcgg tcaggacgat tgggtagtga ccgatctctt tttccggact
    11341 ttggcacacc ttggcgccca gcgcttcgcc aattaactgc gagcccaaac agatccccac
    11401 cacgattttt cgtgccgaaa tcgcctggtt aatcagatgt tgctcggcct gagaatcaaa
    11461 gtacgggcac tcttcgcggg tggtgcgcgg cgactgcgga ccgccaaata ccacgagcat
    11521 atcgaactca tctgcattgg gcggtagcgc ttctccggca tagacgcgcg accatgaaat
    11581 ggtataaccg cgatcttcag cccatttcag ataagcgcca gcggattcaa acgactcatg
    11641 gataacaaaa tgaactcgca cgttattttc tcctgttagc gatttagcgc ctgatggata
    11701 tcagccgcca gcgtgttgat ctcgccgtca tttaatgtcg acagcgtgat acgtagaccg
    11761 tgagacggcg cgcttacgcc aaaggcttcg ccctcacgta ccagccagcc ggattttgcc
    11821 agcgtaaacg cggtagcctg gctatgggtg tccagcggga gccaggcatt cacgccgtcg
    11881 ccgggagaaa tggcgatgcc atattgctgt agggcgcggg ccagtttttg ttgccgggtg
    11941 gcgtaaaaca gccgcgtttg cgccagcctg tgctgatact cagggtcggt caggcaggcg
    12001 tagaccagat cctgtaacag atggctgacc cactgactac cggcatttag ccgcagccga
    12061 agttttgccg aggtcgagct gtcgctggcg acaatagcaa gacgtaaatc ggggccgagg
    12121 gctttggaaa cggagcgtat caccgcccag tgttgcgttg tctgcgcaat aaccggctgc
    12181 cagggcgacg aagaaagcag ggcgaagtga tcgtcgataa tgaccagtac ctgagggtaa
    12241 cgcgccagta tattttgcag cgcagcggca cggcgagcgc tcaggctaca gccggtaggg
    12301 ttgtgtgcgc gcggcgttaa gatcactgcc cgcgcgccct ggtttagcgc ctgctccagc
    12361 ttttcaggct gcattccttc gctatccaca ctgaccgggc tggcgctaaa accggcatag
    12421 cgcagcatat tgatactgct taaaaaacag ggatcttcca ccgcaacgct gtcgcccggc
    12481 agcagatgcg cgcaaagcag tctttcgata gcgtcgatag ctccgctggt gatatcaatt
    12541 tcgcctgcga cgggggtggc atcccgtagc cagcgcgccg cccaggcgtg tagttcaggg
    12601 gaaacgggcg catcgccgta gagatgcggc gtgcggctga gacgggcaaa ataacggcta
    12661 aggtcaggca gacgctgcgg atcgggattg ccgccggaaa ggtcgtgcag aggcgtatgc
    12721 ggatcgccgc cttccaacgc tacgggagac ggactgcctt taatcaccgt cccattgcgg
    12781 cctaaacttt gcgccagtcc cgccgttatc agccgtttat acgccgctgc gacggtattg
    12841 cggttcacct ttaattcgct tgccagctcc cgtaccggcg ggagcgaatc cttcgcccgt
    12901 aacgtgccgg cgataatgtg ttgacggata ctgtcaaaaa tttcgttagc ggtttttccg
    12961 tcgatcatta ttgacctatg acaaaatgaa ttttagcata tgacaatgat aatgaggcgg
    13021 tagcctgctg tccagcgaga ggaaaatttt atgggacaag agagtgatat tcagtcagtg
    13081 ctcttcgacg acaaccatcg ggcgttacag accgatatcg tcgccgtcca gtcacaggtt
    13141 gtgtacggca gcgtaggcaa cagtatcgct gttccggcca ttaaagcgca gggattacgc
    13201 gtgacggcgg tcccgacggt gttgttcagc aatacgccgc actataaaac gttttatggc
    13261 ggcattattc ccgccgagtg gtttgcaggc taccttacgg cgttgaatga gcgcgatgcg
    13321 ctacgtgaat taaaagcgat taccaccggt tacatgggca gcgcagacca aattgtcttg
    13381 ctttcgaagt ggctaatggc gatccgggct tcgcatccgg aggtgtgtat tcttgttgat
    13441 cccgtcattg gcgataccga cagtggaatg tatgtgcagg cggaaattcc gcaggcttat
    13501 cgcacacatt tgttgccgca ggcgcagggg ctaacgccga acgtatttga gctggagatg
    13561 ctgagtggta aaccgtgtcg cacgctggaa gaggcggtgg cggcggcgca atcgctgctt
    13621 tccgatacgc tgaaatgggt ggttatcacc agcgcgccgg gcgaatctct ggagaccata
    13681 acggttgccg tcgttaccgc gcaggtcgtg gaggtctttg cccatccgcg ggtggcgacg
    13741 gagttaaaag ggacgggaga tctcttctgc gccgagctgg tcagcggtat tgtgcaggga
    13801 aaaaaactga cgaccgcggc aaaagatgcg gcgcagcgcg tgctggaggt gatgacctgg
    13861 acacagcagt gtggctgtga tgagttaatt ctgccgccgg caggggaggc gcgatgaaga
    13921 gttatcggct ggtggttcgc cagcaggggc gtatcgtggg gcattttgaa acgagcgggc
    13981 tggacgcgct ggaagatatc tgcgtggcgc gagcgatgtt tggcatcact ggcggctatc
    14041 agtgcgagtt gcaagtgtcc gattccgaac gcaggatact ggagagtggc ccggatggga
    14101 tgaagatcct gatgcgcgag aagtgctttc gcccggtgac ctcgcagttg taacccgtgg
    14161 attggcgctg aaatgttcgc aaccttgtag gcctgataag cgtagcgcca tcaggcagtg
    14221 cgccgcacca tcgccggatg gcggcgcaag tacaggcaaa aaaaatggcg cccaaaggcg
    14281 ccattcttca ctgcggcaag aattacttct taatgcggat aaccggagtt tcacccacgg
    14341 tcacgctacc ggacagtttg atcagttctt tgatttcatc catgttggag ataacaaccg
    14401 gagtcagggt agacttggct ttttcttcca gcaacggcag atcgaactcg atgaccggat
    14461 cgccaacttt cacgcgctga ccttcttcag caatacgctt gaagccttcg cctttcagct
    14521 caacggtgtc gataccgaag tgaacgaaca gctcaatgcc gctatcggat tcgatagaga
    14581 acgcatggtt ggtttcaaag attttgccga tggtaccgtc aacaggggcg accattttgt
    14641 taccggttgg tttgatagcg atgccatcac caacgatttt ttcagcaaaa actacatccg
    14701 gcacgtcttc gatgttgacg atctcgccag agagcggggc aacaatctca atagttccgg
    14761 tgtctttctt atcatcagaa accagagatt ttagtttatc gaacaaaccc atgatcttct
    14821 cctaagcagt aaattgggcc gcatctcgtg gattagcaga ttgttttttc ttcaatgaac
    14881 ttgttaacca gcgtcattaa ctcgtccgtt gtcggttgag caagagcctg ctctgctaac
    14941 accttcgcat cttcgaagtt cgtgttacgg ataatcttct taatgcgcgg gatagaaatg
    15001 gcgctcatag agaattcgtc cagacccatc cccagcaaca gaagtgtagc acgttcgtcg
    15061 cctgcaagct caccacacat gccagtccat ttaccttctg catgagaagc atcaataact
    15121 tgcttgatca agttcagtac ggacggtgac attggctggt aaaggtgtga aatcatatca
    15181 ttaccacggt caactgccag ggtgtactgc gttaaatcat tggtgccgat actaaagaaa
    15241 tcaacttctt tggctaaatg acgcgcaatt gtcgccgcag ccggtgtttc caccatcacg
    15301 ccaatctcaa tgctttcgtc aaatgcttta ccttcgtcac gcagttcctg tttgtagatt
    15361 tcaatctctt tgcgcagcgc gcgaacttct tcaacagaga tgatcatcgg gaacataatg
    15421 cgcaatttac cgaaagcgga ggcacgcaga atcgcgcgaa cctggtcacg caggatctct
    15481 ttgcgatcca tggcgatacg cacggcgcgc cagcccagga acgggttctc ttctttcggg
    15541 aagttcatgt atggcagctc tttgtcgccg ccaatgtcca tggtacggac gataaccgcc
    15601 tgcgagccgc acgcttcagc gaccgcttta taggcggcaa actgctcttc ttccgtcggc
    15661 agcgcgtcgc gatccatgaa caggaattca gtacgataca gaccaacgcc ttccgcgccg
    15721 ttacgctcag cgccttcaac gtcacgaacg gtaccgatgt tggcgcaaac ttcaacctga
    15781 tgtccatcca gcgtgattgc cggcagatct ttcagttttg cgagttccgc tttctcggtc
    15841 gcaacctgct cctggacggc gcgcagttgc tcaataacat cgttggtcgg gttgacgtaa
    15901 acctggttgt ttacggcatc cagaatcaga tagtcgccgt ttttcacctg agcggtgacg
    15961 ctaccggtac ctacgatcgc tggcagttcc agagaacgcg ccatgatgga ggtatgagac
    16021 gtgcgtccgc ccgcgtcggt gatgaagccc agcactttct gcaggttcag ctgtgcggtt
    16081 tctgacggcg tcaggtcagc ggcaaccagg ataacttctt cctgaatcgc gctcagatcg
    16141 ataatggcca gacccaggat gttgcgcagc aggcgcttac cgatatcacg tacgtcagcc
    16201 gcacgctctt tcaggtattc gtcatccagt tcttccaggg cagtggcctg accttcgata
    16261 acttcatgtg cggctgcgtc agccgtcatg tgcttatctt taatcagggc tatgatttcc
    16321 tgctccagct cctcatcttc gagcagcata atatgccctt caaagatggc ttctttttct
    16381 tcaccgaacg tttcaccagc ttttgtcttg atcgcttcca gttgcgcaga tgccttggca
    16441 cgaccgctca gaaaacgttc aacttcctga tcaaccttgt cggcagaaat ttttttccgg
    16501 tcaatgacga tttcgtcttc tttcagcagc agtgctttgc cgaaagcgat acccggggat
    16561 gctaaaatgc ctgaaatcat aaccctacct tacttgtgac tgatttttaa aagaacccgg
    16621 aaaaaaactt actcgagttc cgccatcagt ttgaccagat gttcaaccgc tttctgctca
    16681 tcttcacctt ctgcggagat ggtgacgacg gtgccttgag tcaggcccag agtctgcagt
    16741 ttaaacaggc ttttcgcgct ggcgcttttg ccgttggaag tcacagtaat ctcagaagtg
    16801 aagccttttg cttctttaac aaactgagca gcagggcggg tgtgcagacc gttcggagcg
    16861 gtaatggtaa cttcttgctg gaacattgta tttccccaac ttataggttt agtgttgtgg
    16921 aactaaagtc tagcctggcg gctcaacttt agcctgtatt gttagcgccg gcgtaaacgg
    16981 gacgcgacac aaaaggtgtt ctacgcaatc cgttgctggc aacttatggc cgctgacgtt
    17041 tcgctcgtca ttaaacatta tgccgcgaaa ggaagagttg aaccaaatca taaaatcgat
    17101 tcagctaacg cttttcctgt aacgattaat ttcgcgcatc aaaataatta gtctggttaa
    17161 ataccagttc cggcagggtg aatcaatgcc aggtgaggtg aaagtttgaa gcaggccaca
    17221 aaaaagcacc caaaaaggtg cttttttacg cgtttttaac atgctggcat cactgttgca
    17281 gttctttctc agtaaagaga tcggcgaaca acgcggtgct cagataacgc tcacctgatg
    17341 agggtaggat aaccacaata ttcttattgg taaagctttc atcttcctgc agcttaagcg
    17401 ctgcagcaac cgcggcgccg gaagaaattc ccgccagaat accttcctct tccatcagac
    17461 ggcgcgcggt agaaatggct tcttcattgg tgatgccaac cactttatca atcagtttca
    17521 gatccaggtt gcccgggatg aagcctgcgc cgatgccctg aattttatgt gggcccggtt
    17581 tgatctcttc accagccagc gcctgggcga taaccgggga gtcagtgggt tctaccgcaa
    17641 cggtgataag atcggtttta cccttcgtcc ctttgatata acgcgtgacg ccggttaacg
    17701 taccgccagt gccgacgccg gagataaaca catccacctg accatcggtg tcttcccaga
    17761 tttccgggcc ggtggttttt tcatggattt ccgggttggc agggttgctg aactgctgga
    17821 gcaggagata tttttgcgga tcgctggcga caatttcttc ggctttctga atagcgcctt
    17881 tcatcccttt cgccccttcg gtcagcacca gattcgcgcc taatgctttg agtagcttgc
    17941 ggcgttcaat gctcatggtt tccggcatgg tcagggtgag tttgtaaccg cgcgcggcgg
    18001 cgacatacgc cagcgcaata ccggtattgc cgctggtcgg ctccaccagt tccacgccag
    18061 gtttcagtac gccacgcttt tcggcatccc aaatcatatt ggcgccgata cggcacttga
    18121 cgctgaagct cgggttgcgc gactccacct tcgccagaat gcgtccatta ccgatacgat
    18181 tcagtcgaac cagcggcgta tgaccgatag tcagcgagtt atcttcataa atcttactca
    18241 tggcctgtcc ttaactgtat gaaattggga taccttccca gcataccttc cagccagata
    18301 tggggaagta aggatttcgc atatctatat gctgatgggg aataatggtt atcagtatgg
    18361 aataagagac agcataagag cctatcccat tagggctatt ttacttgcca ttttggtctt
    18421 gggcagtgct cgccaaaacg cattagcgtt ttgaacgccg cttgcggcgg cccgaagggc
    18481 gagcgtagcg agtcaaacct cacgtactac gtgtacgctc cggtttttgc gcgctgtccg
    18541 tgtccaaact ggctgcgcca ataacgcttg gtgggatagg ctctaagcca tctcttattt
    18601 atacattttt acgttatttc cataacgcgt gtttagcacg ccagcaatca acccacattg
    18661 ccgtcgcgcc acagacggcg acaggcataa tgaaaaggtt aagcaccgga atcatcgtaa
    18721 agaggctggt gagcgcgcca aattgcatat tcgccacctt ctgcgtgcgc aacgcggcgc
    18781 gcatcgtttt aaacggcact ttgtggttat caaacgggta gtcgcaatac tggatcgcca
    18841 gcatccaggc gctgaacaaa aaccacagca ccggcgcgat ggtttggcca atgccaggaa
    18901 taaaatagag aaccagcagc acaatagcgc gcggcagata ccacgccagc ttttgccatt
    18961 cacgtttcat aatgcgcggt acatctttca tgatgccgag tatgccggta tctggcggcg
    19021 tagcgccggt taaccgcgcc tcaagctgtt cggctaaaag gccgttaaac ggcgcggcga
    19081 tccagttggc gagggtagag aaaaaatagc caaagaccaa cagaacagag ataaccgcaa
    19141 tcggccacag cagatagctc agccattgca gccagtccgg cacatgactc atcaacgaag
    19201 gtatccaggc gtcaagctgg gtaaacagcc accaaaatgc gccgcccatc agcacaatat
    19261 tgaccagcaa aggtaaaata acaaagcggc ggattcccgg tagggtgact aacttccatc
    19321 cttgcgagaa ataatagacg ccgctacgtg gtacggttgt ggatgatgaa accatattca
    19381 ggacatactc ctttttctta aagccctggg taaacgtggg atatcttacc cggttatcag
    19441 acggtggata gttcggaaat gttcgaaaaa acagcaaaaa gcacattttc cttcatcttt
    19501 atgctgcgaa agccaacagt acacttgcac ttgacgtaat cggcaaatac tcttagtgag
    19561 taaatgtttg ccgtggtggc aaggtgttag aacaacagag aatataatga tgcaggattt
    19621 gcgtctgata ttaatcattg ttggcgcgat cgccataatc gctttactgg tacatggttt
    19681 ctggaccagc cgtaaagaac gatcttctat gttccgcgat cgtccactaa aacgcatgaa
    19741 atcgaaacgc gacgacgact cgtatgacga cgatgtcgaa gaagacgaag gcgtgggtga
    19801 agttcgtgtt caccgcgtaa atcatgcccc cggccagtcg caggagcatg atgcccctcg
    19861 tcagtcgccg caacaccagt accagccgcc ttatgcgtct gcgcaaccgc gtccagcggc
    19921 gccgccgcag ccgcaagcgc cgatgcaaca gccggttcag caaccggtcc aacctgcgcc
    19981 gcagcctcag caggttcagc catctgcgcc gccggtacag ccgccgcaac agcagcctgc
    20041 accgccgtcg caagcgccgc agcctgttgc gcagcccgcg ccgccgccat cagcgcaaac
    20101 cttccagcct gcggaacctg tggttgaggc ggaaccggta gtggaagaag cgccggttgt
    20161 ggaaaaaccg cagcgtaaag aggcggtcat cattatgaac gtcgcggccc atcatggcag
    20221 cgagcttaat ggtgaagtgt tactgaacag tattcagcag tcaggcttta aatttggcga
    20281 tatgaatatt ttccatcgtc atttgagccc ggacggcagc ggcccggcct tgttcagtct
    20341 cgcgaatatg gtcaatccgg gaacgttcga tcctgaaatg acggacttca ctacgcctgg
    20401 cgtcactatc tttatgcagg taccgtctta cggcgatgcg ctgcagaatt tcaagctgat
    20461 gctgcaatcc gcgcagcata tcgctgatga ggtcggtggc gtcgtgctgg atgaccagcg
    20521 tcggatgatg acgccgcaga aactgcgcga atatcaggac cgcatccgcg aggtgatgga
    20581 cgctaacgcc tgaggttaac gcaggtgtga catttttaac gtaacccccg cctgtcgggg
    20641 gttttttatc attgatggtg tgatatggaa ccaatcgaac aacaactgac agaactgcga
    20701 accacgcttc gccatcatga atatctgtat catgtgatgg atgcgcccga gattctcgac
    20761 gccgaatatg accgcctgat gcgggaactg cgagagctgg aggcgcaacg tccggacctt
    20821 atcacgccgg attcgcccac gcagcgcgtt ggcgcggcgc cgctgacggc attcaaccag
    20881 attcgccatg aagtaccgat gctgtcgctc gataacgtat ttgatgaaga aagcttcctg
    20941 gcgtttaaca agcgagtgca ggatcgtcta aaaagcacgg aaaatgtcat ctggtgctgc
    21001 gagctaaaac tggatggcct ggcggtcagc attctgtatg aaaacggcgt gctggtgagc
    21061 gctgcgacgc gtggcgacgg caccaccggt gaagatatca cttcaaacgt gcgcacgatt
    21121 cgcgccattc cgttaaagct gcacggcgat aacattccgg cgcgtcttga agttcgcgga
    21181 gaggtatttt taccgcaggc cgggttcgaa aagatcaatg aagacgcgcg ccgtactggc
    21241 ggcaaagtgt ttgctaatcc gcgtaacgcg gcggcgggct cgttgcgtca gctcgatccg
    21301 cgtattacgg cgaagcgacc gctaacattt ttctgctacg gcgtcggtat tctggaaggc
    21361 ggagagttgc cggatacgca tctgggacgg ttgctgcaat ttaaagcgtg ggggttaccg
    21421 gtcagcgatc gcgtgacgct gtgcgattct ccccaggcag tactggattt ttatcacaac
    21481 gtcgaaaaag atcgccccac gctcggtttt gatatcgacg gcgtggtgat taaggtcaac
    21541 tcgctggctt tgcaggaaca gctgggcttt gtggcccgcg cgccgcgctg ggcggtggcg
    21601 tttaaatttc ctgctcagga gcagatgact tttgtgcgcg acgttgagtt tcaggtcggg
    21661 cgcaccgggg cgattacgcc ggtggcgcgt ctagaaccgg ttcaggtggc tggtgtgctg
    21721 gtcagcaatg ccacgttgca taatgccgat gaaattgagc ggcttggctt gcgcattggc
    21781 gataaggtgg ttatccgtcg ggcaggcgat gtgatccctc aggtggtcaa cgtggttctg
    21841 tccgaacgcc ctgaagagac gcgtccgatt gtgtttccaa cgcactgtcc ggtgtgcgga
    21901 tcggacgtag agcgcgtcga aggcgaagcc gttacccgtt gtaccggcgg gctgatttgc
    21961 ggcgcgcagc gtaaagagtc gctgaaacat tttgtgtcgc gccgggcgat ggatgtagac
    22021 gggatgggcg ataagatcat cgaccaactg gtggaaaggg agtatgtcca tacgccagcg
    22081 gatctgttcc gtctgacggc gggtaaactg accggcctgg accgaatggg gccaaagtcc
    22141 gcgcaaaatg ttgttaacgc gctggaaaaa gccaaagcga cgacttttgc gcgttttctc
    22201 tatgcgctgg gcatccgtga agtgggtgaa gcgacggcgg cggggctggc ggcgtacttc
    22261 ggcacgctgg aggcgctgca ggctgccacc attgacgagt tgcagaaagt acccgacgtg
    22321 gggattgtgg tcgctacgca cgtctttaac ttttttgccg aagagagcaa tcgtgacgtg
    22381 attgggcagc tactggcgga aggggttcac tggcccgcgc cggtagtcat taatgcgcaa
    22441 gagatcgata gcccgtttgc cggtaaaacc gtggtactaa ccggtagcct gagccagatg
    22501 tcccgcgatg acgctaaagc gcgtttagtg gctctgggcg cgaaagtggc aggcagcgta
    22561 tcgaagaaaa ccgatctggt gattgccggt gaagcggcgg gctccaaact ggccaaagcg
    22621 caggaactgg gtattaccgt gattgatgaa gcggaaatga tccgcttact gggtgcctga
    22681 gatggaaaaa gagcagctgc ttgaaatcgc caacaccgtg atgccctttg gcaaatatca
    22741 gggacgtcga ttgatcgacc ttccggaaga gtatttgctg tggtttgccc gtaaagatca
    22801 atttccggcg ggtaaactag gggagttgat gcaaatcacg ctgctgatta aaaccgaggg
    22861 gctgacgcaa ctggtgcagc ccctgaaacg cccgctttaa gctttcgcgg cgcggctttc
    22921 ctgctgcgcc tgtaacttct cggtctggcg tttgtagcgc cgcgccagcc ctgcgcagac
    22981 catcagttgg atctggtgga agatcatcag cggtaatacc atcataccca gcactgacgt
    23041 cggaaacaga atattggcca tcgggatccc gttggccagg ctttttttcg aaccgcagaa
    23101 gacaatagtg atttcgtcgg ctttattgaa gccgcattta cgggcgacaa agacgttaat
    23161 ggctatgacg atcgccagca gtatgaggct gaccacgacg ataaacagca gcgatcccca
    23221 gccgactttg tgccagatgc cgttgaccac cgcttcgctg aacgccgagt agaccaccaa
    23281 cagaatagag gtctgatccg ttttcgcgat ccactttttg ttgcgcgcga cccaattgcc
    23341 gatccacggg cgagacaggt gtcccagcac aaaaggcagc agcagttgca gcataatttt
    23401 gcccacctct tccagactgc cctgcgcgcc atgaatattc attaccagac cgaccagcag
    23461 cggcgacagg aaaatgccca gcaggctgga cgcagacgct gagcacaccg cggccgcgac
    23521 gttgccgccc gcgagtgaag taaatgcaat cgccgactgc acggtggcgg gcaaaataca
    23581 cagatacaga aagccgctgt agagcatagg gtcgacattg acaggcgccc accaggcaaa
    23641 cagcacgccg aggacaggaa agagcacaaa agtgctgcac atgacccaca gatgcaaccg
    23701 ccagtggctg ccgccagcga tgatcgcttc acgcgaaagc ttcgcgccat gcataaaaaa
    23761 cagcagagcg atagccgctg tcgtaatgcc ttcaacgaca ggcacaaagc caccttccgc
    23821 cgggaaaaaa gaggccagta gtaccacggt gataagtgtc agcgtgaaag ggtcaaggat
    23881 acgaaaaagt ttcataaaaa ctcctgaaag tcggtgcagc tattttgcgt ttttcgcttt
    23941 gagaaataaa attgatttat tgcatctata tatgaatcta gtcgatgaac tattcactgc
    24001 gtcaactgcg gatttttatt accgtcgccc aggccaaaag ttttagtcgg gcaggggaca
    24061 ggattggact gagccagtct gcggtcagtc atagcgtaaa agagctggag cggcaaaccg
    24121 gcgtcagact gttggatcgc accacgcgtg aggtggtgct gaccgaggcg gggcaacagc
    24181 tggcgacgcg tctggagcgg gtgcttgatg aactgaacag catactgcgc gatgcaggca
    24241 gagtagggac acaattaacc ggcaccgtgc gcgttgccgc gagccaaacc atttctgcgc
    24301 atcttattcc gcaatgcatt gcccaaagta attcacttta tcccgctatt gattttgtat
    24361 tgcacgatcg tccgcagcag tgggtgctgg agagcatccg ccagggtgaa gtggattttg
    24421 gcatcgttat cgatcccggc gcagcggtgg atttacagtg tgaagccatc ttatcagagc
    24481 cttttttact gttgtgtcgc caggatcatc cgctggcgca tcaggaatgg gtgagctggc
    24541 aggatcttaa acaggcctcg ctggtcttac aggattatgc ttccggcagt cgaccgctga
    24601 ttgatgcggc gctggcccat tttgctattg aggcggatat cgtgcaggag attggtcacc
    24661 cggccacgct gtttccaatg gtggaagcgg gaatcggcat cagcgtgctg cccgcgctgg
    24721 cgttaccgct cccgcagggc agccacttac aggttaaacg gctgacgccc gtagttgaaa
    24781 ggcagctcat gctggcgcgg cgaaaaaacc gatcgctctc cacggcggcg caggcgttgt
    24841 gggacgtggt gcgtactcag gccagcgaat taaccgccgc gagggcgaaa gatccgctgt
    24901 atcagctata aatatctatc tgtccgtgtg tgaggtgcgg tcttgccctg ccatttttga
    24961 cagggcagtg tgttaaaaca ggtatttgat ggaataaata atgccatcct gcaggaagga
    25021 ttctcctaac ttattatcag cgtaacgata ttgtactcct gcggtcaggt gaggagtcgc
    25081 attccaccac agcgctactg cgccattaat gccatctttc ccgccattgc ccgcagcgta
    25141 ggacgcatcg cggtcaaact catactcatt ccagttcgtt acgctgaatt tctcactacc
    25201 caacgagaag ctatagccgg ccacccaacc taatacataa ccattatcgc ctgtgtagta
    25261 ggtctgatcg gtataacgtt tggcaaagaa gggtttaaac cagtaaccgt tacctgtgaa
    25321 gttatagcct aaaccataga gaaacatgtc atcatggaaa ttagcgcgat gaggtgaacc
    25381 gtacgtcccg taggcatgga gatagaggtt taatcctgta tcgcccagat aaatacggtt
    25441 ggtattttta aaggtgtaac gctgttcgct gcttggttta gcgtggcggc cattgtaaaa
    25501 attttcccag tcgaagaacc cgtacatttc tccccagcta aaattcgctc cgccttccag
    25561 ttccaggtac ccaaaatcat ctttatggga ttttttactg gttttttccg tggtgtctga
    25621 tgtccagtcg aggtaatgga ggccgatatc ggcgaacccg cctttaaatt ccgcatgggt
    25681 gagtgcggga ataatgagta aagaagaaag cgtcagagta agaatttttt tcatagcata
    25741 tttccctatg ccgataatta ttaatgggtt aattaaaaag aggcaattta taaatatgaa
    25801 agcggcatat tgttaatatg aagtgcaagc aaaaaccaat actgttttcc ctctgtatta
    25861 atacagaagc gatctaaatc tatcgatatt aaatggctat tgatgacacg tgaaaagtgt
    25921 attggtcagc aaggggcgat ggtcgttata aaaaggagtc aaattaaatc cgatagaaca
    25981 aggaaactta tgcctcacgc tcttttttct cataatcctg agtattgtat tgatattatt
    26041 catgcacata aaccggcatt taccccgcga gtcgcgttta ttttaggctc cgggttgggt
    26101 gctctggcgg atcaaatcga agatgcggta gccatttctt acgagaaatt gccgggattt
    26161 cccgtcagca ccgtacacgg ccatgctggt gaactggtgc tcggccatct ggcgggtgtt
    26221 ccggtggcct gtatgaaagg ccgcggacat ttttatgaag ggcgtggaat ggcggtgatg
    26281 accgatgcca ttcgcacgtt gaaattactg ggctgtgaag tgttgttctg caccaatgcg
    26341 gcaggatctc tgcgtccgga agtggggccg ggtagcctgg ttgcgcttag cgatcacatt
    26401 aatacgatgc ccggtacgcc gatggtgggg ccaaacgatg atcgttatgg cgatcgcttc
    26461 ttctcgctgg ctaatgctta tgacgcagat tatcgcgcca tgcttcagtc cgttgcggca
    26521 gagaagggat tccccctcac tgaaggcgta tttgtttctt atccgggtcc gaacttcgaa
    26581 acggcggcag aaatccgcat gatgcagatt attggcggcg atgtggtcgg aatgtccgtt
    26641 gtccctgagg tgattagcgc acgtcattgt ggcctcaaag ttgttgccgt ctcagcgatc
    26701 accaatctgg cggaagggct gggcgatgta aaactctccc atgcgcaaac gctggcggcg
    26761 gctgaacttt cccggcagaa ctttatcaat ctgatttgcg gctttttacg taagctggcc
    26821 taaacacaat gactacggcc ccgtattggg gctttatctc acggcaagga ataaaaaatg
    26881 ggtattacgt cccgcttaaa agtcatgtcg ttcttgcaat attttatctg ggggagctgg
    26941 ctggttaccc tgggctctta catgatcaac actctggatt ttaccggcgc gaatgtcggt
    27001 atggtctaca gctcaaaagg actggcagcg attatcatgc cgggcattat ggggatcatt
    27061 gctgataaat ggctgcgcgc tgagcgagcc tatatgcttt gccatctggt ttgcgcgggg
    27121 gcgttattgt acgccaccac cgttaccgat ccccagacga tgttctgggt gatgttggtt
    27181 aatgcgatgg cgtatatgcc aacgattgca ttatccaata gcgtttcgta ctcctgtctg
    27241 gcgaaagcag gtcaggatcc ggtaacgtca tttccgcccg tgcgcgtttt cggcacaata
    27301 ggttttattg ttgcgatgtg gacggtgagc ctgatggggc tggaactgag cagtgcgcaa
    27361 ttatacatcg cttctggcgc atcgttattg ctggccctgt atgcgctgac gttaccgaaa
    27421 attccggtag ccgagaagaa ggcgaacacc acgcttgtca gtaagctcgg actggatgct
    27481 tttgttctgt ttaaaaatcc acgcatggca atcttctttt tgtttgcgat gatgttgggg
    27541 gcggtgctgc aaattaccaa tgtcttcggt aatccgttcc tgcatgattt tgcccgtaat
    27601 cctgagtttg ccgatagttt tgtggtgaag tatccctcta tcttgctttc agtttcgcag
    27661 atggcggaag tgggctttat cctcaccatt ccgttcttcc ttaaacgctt tggtattaaa
    27721 acggtaatgc tgatgagcat gctggcgtgg acgctgcgtt tcggcttctt tgcctttggc
    27781 gatccatccc cgtttggctt tgtgctattg ctgctgtcga tgattgttta tggctgcgca
    27841 tttgatttct tcaacatctc agggtcagta tttgtagagc aggaggtgga ctcaagtatt
    27901 cgcgccagcg cgcaggggct gtttatgacc atggttaacg gcgtgggggc gtggattggg
    27961 tctcttttaa gcggtatggc cgtggattat ttttctattg atggcgtaaa agattggcaa
    28021 accatctggc tggtttttgc cgcctacgct ctggcattgg ccgttatttt tgcattgttc
    28081 tttaaatatc agcaccatcc agaaaaactg tcgaccaaat cattagcaca ttaattttat
    28141 ttgactggcg agaggatgtt cgccagtcca tttttatgaa caaggacaca gtatgaaaga
    28201 aattattctc tcctccggta ttggatttgg tattggcgca ttttttactt tatgccgtat
    28261 acctattcct gcaccaaatg ttttacccgg ggttttatct attgtattta tgtatattgg
    28321 gtatcttgtc gttaaatcta ttttttacta ggtaatatgg taaattccag acgttatccc
    28381 ttattcctgg agtgcgatag tgatggaacg agcccatcgt attgatctaa agctattacg
    28441 ttatttcctc gctgttgcag aagaattgca ttttggccgg gctgctgccc ggttaaatat
    28501 gtcacaacct cccttgagta tccatatcaa agaacttgaa cagcaactgg gtacattgct
    28561 gtttattcgt cattcccgca gcgttgcatt aacccatgcc gggaaagttt taatggagga
    28621 gtcacgtcgc ttgttagcca atgcaaatca ggcgctggcg cgagtggagc agattggtcg
    28681 cggtgaagcg gggcgcattg aactgggtgt ggttggtacg gcgctgtggg gaagaatgcg
    28741 tcctgcgatg cgtcactttt tgaaagcaaa tcccaatgtt gaagtacttt ttcgcgaaaa
    28801 gtctccaggt atgcaaatgg cgttgttaga gcgtcgggaa cttgatgcag ggatctggcg
    28861 tatggctatc gaaccagcag tcggttttac cagcatacgt ttgcatgaat ctgcattcat
    28921 ggttgcagtt ccggaagatc acgatctggc atccagagat tctgtgccgc tgtcggcgtt
    28981 gcgcaatgaa tattttgtta cgttgccttc cgtacattct gattggggat ttttacaacg
    29041 tgtatgccaa caggcgggtt tctcgccaat gattattcgg gaagtggttg agccgcaaac
    29101 ggtgttggcg atgatcagta tggggatcgg gattacgttg atggctgatg gctatgcgca
    29161 aatgagctgg ccgggtgtgg tgttccgtcc gttagaggaa cgtattccgg cggatttgta
    29221 tattgtgtat gaccagcagc aggcaacgcc agcactggag aaactggtgg cggcgttgac
    29281 ggtatgatgt ctgtgccgga tggcgactaa cgtcttatcc ggcctacgcg gcggtgtcgt
    29341 ctgtaggcct gataagcgca gcgcatcagg caagacccga acctgcggca ggttcgaatc
    29401 ttataaatcg cagatagcaa aaaagcgcct ttagggcgct tttttacatt ggtgggtcgt
    29461 gcaggattcg aacctgcgac caattgatta aaagtcaact gctctaccaa ctgagctaac
    29521 gacccgaagt ggtgggtgat gacgggatcg aaccgccgac cccctccttg taagggaggt
    29581 gctctcccag ctgagctaat cacccacttc ggtacttcac aataagaaat ttagctggcg
    29641 agaaagtggt gggtgatgac gggatcgaac cgccgacccc ctccttgtaa gggaggtgct
    29701 ctcccagctg agctaatcac ccacttctca atttcttatc tacacggcgg agactacata
    29761 aagtagttgg tgggtgatga cgggatcgaa ccgccgaccc cctccttgta agggaggtgc
    29821 tctcccagct gagctaatca cccccgctgt gtggagtcgc attataggga gagttgaaaa
    29881 tgagtcaacg cattttctaa agtttttgtt tgttcgtcgt aaaattaaac aaaacgatcg
    29941 tgaattaccc cgcactgcat gatttctata cggaaatagc aaagcgcagc gttctgaccg
    30001 gatcaacatt gaggaatcaa gccacagtga tagaatacaa ggctattcat ctttccagga
    30061 tttgccggtt gtcggcatct ttataaacgt aaggccattt catgaaaatc aaaactcgct
    30121 tcgcgcctag cccgacaggt tatctgcacg tcggcggcgc gcgtactgct ctttattcct
    30181 ggcttttcgc acgtcaccac ggcggtgaat tcgtgctgcg tattgaagac accgatcttg
    30241 agcgttccac gccggaagcc attgaagcca tcatggatgg tatgaactgg ctgaacctgg
    30301 aatgggacga aggcccatat ttccagacca aacgttttga tcgctataac gcggtgattg
    30361 acgagatgct ggaggcggga acagcctata aatgctactg ctctaaagag cgtctggagc
    30421 aactgcgtga agatcagatg gcgaaaggcg agaagccgcg ttatgacggg cgttgccgtc
    30481 acagccacga acatcatgcc gacgatgagc catgcgtggt gcgctttgcc aacccgcagg
    30541 acggttccgt tatttttgat gatcagatcc gtggcccgat cgaattcagc aatcaggaac
    30601 tggacgatct gatcattcgt cgtaccgacg gttccccaac ctacaacttc tgtgtggtgg
    30661 tggacgactg ggatatggaa attacccatg tgattcgtgg cgaagaccat atcaacaata
    30721 ctccgcgcca gattaacatt ctgaaagcgt taaacgcgcc ggtgccgatg tacgcgcatg
    30781 tgtcgatgat taacggcgac gacggtaaaa agctgtctaa acgtcacggt gcggtgagcg
    30841 tgatgcagta tcgcgatgac ggttatctgc cggaagcgtt gctgaactat ctggtgcgtc
    30901 tgggctggtc cagcggcgat caggaaatct tcacccgcga agagatgatc aagctgttct
    30961 ccctcggtgc ggtgagcaag tctgcgagcg cgttcaacac cgataaactg ctgtggctga
    31021 accaccacta tatcaatacg ctggcgccgg aatatgtggc gacgcatttg cagtggcata
    31081 tcgagcagga aaatatcgac acccgtaacg gcccgcagct tgctgagctg gtgaagttgc
    31141 tgggcgaacg ctgcaagact ctgaaagaga tggcgcagag ctgccgctac ttctatgaag
    31201 acttcagcga gtttgacgcc gatgcggcga aaaaacacct ccgcccggtg gcgcgtcagc
    31261 cgctggaagt ggtgcgcgac aagctgtcgg cgattacgga ctggtcagca gaaaacgtcc
    31321 accacgcgat tcaggccacg gcggatgagc tggaagtggg gatgggtaaa gtagggatgc
    31381 cgctgcgtgt ggctgtgacc ggtgccgggc agtcgcctgc gctggatgtc accgtacatg
    31441 cgattggtaa aacccgcagc attgagcgta tcaacaaagc gctgggcttt atcgccgagc
    31501 gtgaaagtca gcagtaacgc cagctgaaac agaataaacg gcagggcaga cgcctgccgt
    31561 ttattatttg ttagtccgcc tcattgatac ctaaacgcgt cagaaatccg cgaatacctt
    31621 cccgcgataa aaacagcgcc agtttttcct gttcctgagc agacatattt tcaacggcat
    31681 caataatttg tcgataagcg tgactgtgcg tcgcgttcgc atattctgcg aaagcctctt
    31741 ccgcctgata aaacgcaggc agtttgcgaa aagccggaat attgagaata aactcccgca
    31801 cgctggcatc aatatggatg agtcttgcgc gtccgccttt gacgccggga aatttttcgg
    31861 ttttccagtg ttgttctctg atccagcgat tgacggtttg tctggccacg ccgaggcatt
    31921 cagccagctc ttcagtggtc attttactgc gtaatctttt catattattt gctatcgcgt
    31981 atccctaagc gttgtaacaa accggtaatc ccttcacgca cgaggagaga ggtaaactgt
    32041 ttctgctcgg atgaggtcat ctctttggcg agcgtcatga gcagcgcttc aagcgatgcg
    32101 ttgctggcag gcgtgaatgt gtctgcgtga tggtcaactg aacgttcagc gctgcggata
    32161 tattcacgaa cctgttcgtt tacatgaacc agacgggctt taccgccctg gacgccaggt
    32221 ttgggcgatg ttgcccagcc ttctttccgt acccatttat tgatggtttg tcggctgtaa
    32281 ccggtgagat tagcgagttc ttctggcgtc atccgttcct tgaacataac gattccctga
    32341 atagtcgtgg ggttaattag tggttcattt tatagcacca ttttagtcga aaccgtgacg
    32401 tgtttaacta ctgaatgcga gttgtgccgc aatgtccttt atttgaatgc tttttcagcg
    32461 attgaattcg gcaagttcat tttgccgttg acacatgccg agggaattca tatgatgccg
    32521 cccgtcaact cgacaagctt tacgtagtgg ggctatagct cagctgggag agcgcttgca
    32581 tggcatgcaa gaggtcagcg gttcgatccc gcttagctcc accaaattta ctcccgataa
    32641 atttggcgta tacgtaaaag cactatgggg ctatagctca gctgggagag cgcttgcatg
    32701 gcatgcaaga ggtcagcggt tcgatcccgc ttagctccac caacgttcaa accctcgctg
    32761 aaaagcgggg gtttttgctt tttgtcacaa aattcatggc gtctgatctg ctcttcaggt
    32821 gcgttcgttt gccgctgctt ttgcggtcaa tatgagcttt tgttagattg cttcataatg
    32881 cgaatatact tattattcat gcgccttata taatgatgtg agcattaaa
//
LOCUS       DAJVSD010000019        32510 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.019, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000019 DAJVSD010000000
VERSION     DAJVSD010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 32510)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32510)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32510
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.019"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            24..587
                     /gene="srlA"
                     /locus_tag="OQP62_000758"
                     /gene_synonym="gutA"
     CDS             24..587
                     /gene="srlA"
                     /locus_tag="OQP62_000758"
                     /gene_synonym="gutA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HCS1720385.1"
                     /translation="MIETITHGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNAL
                     INFIGQQRIERFAQRCAGNPLSRYLLLPFIGTFVFCNPMTLSLGRFMPEKYKPSYYAA
                     ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLGLPLGPLAVSYLLVGLVTNFFRGWV
                     TDLTTAIFEKKMGIQLEQKVHLTGAVS"
     gene            584..1555
                     /locus_tag="OQP62_000759"
     CDS             584..1555
                     /locus_tag="OQP62_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HCS1720386.1"
                     /translation="MTRVRIEKGAGGWGGPLELDVTPGKKIVYITAGTRPAIVDKLAQ
                     LTGWQAVDGFKEGEPPEAEIGAAIIDCGGTLRCGIYPKRRIPTINIHSTGKSGPLAQY
                     IVEDIYVSGVKEENITLVGETSARPQPAKTTLGRDYDTSKKITEQSDGLLAKVGMGMG
                     SAVAVLFQSGRDTIDTVLKTILPFMAFVSALIGIIMASGLGDWIAHGLAPLASHPLGL
                     VTLALICSFPLLSPFLGPGAVIAQVIGVLIGVQIGLGNIPPHLALPALFAINAQAACD
                     FIPVGLSLAEAKQDTVRVGVPSVLVGRFLTGAPTVLIAWFVSGFIYQ"
     gene            1567..1929
                     /gene="srlB"
                     /locus_tag="OQP62_000760"
                     /gene_synonym="gutB"
     CDS             1567..1929
                     /gene="srlB"
                     /locus_tag="OQP62_000760"
                     /gene_synonym="gutB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HCS1720387.1"
                     /translation="MSVIYQTTITRIGQSAMEALGEKMLITFREGAPADIEEFCFIHC
                     HGELTGALQPGARCELGQHCYPVTAVGSVAEQNLRELGHITLRFDGLREAEFPGTVHV
                     AGPVPDDIAPGCILTFVA"
     gene            1941..2720
                     /gene="srlD"
                     /locus_tag="OQP62_000761"
     CDS             1941..2720
                     /gene="srlD"
                     /locus_tag="OQP62_000761"
                     /EC_number="1.1.1.140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbitol-6-phosphate dehydrogenase"
                     /protein_id="HCS1720388.1"
                     /translation="MNQVAVVIGGGQTLGAFLCRGLAEEGYRVAVVDIQSDKAANVAQ
                     EINADFGEGMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFISDFQL
                     GDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFG
                     GVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLCIKPDEVEQYYIDK
                     VPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQVMF"
     gene            2797..3156
                     /gene="gutM"
                     /locus_tag="OQP62_000762"
     CDS             2797..3156
                     /gene="gutM"
                     /locus_tag="OQP62_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
                     /protein_id="HCS1720389.1"
                     /translation="MVSTLITVAVIAWCAQLALGGWQISRFNRAFDKLSQQGRVGVGR
                     SGGRFKPRVVVAVALDEQQRVTDTLLMKGLTVFARPVKIAAMQGKHLHELQPDVIFPH
                     DSLAQNALSLALKLKHG"
     gene            3355..4128
                     /gene="srlR"
                     /locus_tag="OQP62_000763"
                     /gene_synonym="gutR"
     CDS             3355..4128
                     /gene="srlR"
                     /locus_tag="OQP62_000763"
                     /gene_synonym="gutR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucitol operon DNA-binding transcriptional
                     repressor SrlR"
                     /protein_id="HCS1720390.1"
                     /translation="MKPRQRQAAILEHLQKQGKCSVEELAQYFDTTGTTIRKDLVILE
                     NAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKALIAAAAVKYIHDGDSIILDAGST
                     VLQMVPLLSRFSNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENA
                     FEQFSFDKLFMGTDGIDLNVGVTTFNEVYTVSNAMCNAAREVILMADSSKFGRKSPNV
                     VCSLETVDKLITDAGIDPAFRQALEAKGIEVIITGESNE"
     gene            4121..5086
                     /gene="gutQ"
                     /locus_tag="OQP62_000764"
     CDS             4121..5086
                     /gene="gutQ"
                     /locus_tag="OQP62_000764"
                     /EC_number="5.3.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311591.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-5-phosphate isomerase GutQ"
                     /protein_id="HCS1720391.1"
                     /translation="MSDALLNAGRQTLMLELQEASRLPERLGDDFVRAANIIIHCEGK
                     VIVSGIGKSGHISKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGA
                     KELDLIIPRLEDKSVALLAMTGKPHSPLGRAAKAVLDISVEREACPMHLAPTSSTVNT
                     LMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNNVHHLMRQGDAIPQVMLATSV
                     MDAMLELSRTGLGLVAVCDEQHVVKGVFTDGDLRRWLVGGGALTTPVSEAMTPNGITL
                     QAQSRAIDAKELLMKRKITAAPVVDENGKLTGAINLQDFYQAGII"
     gene            complement(5083..6603)
                     /gene="norR"
                     /locus_tag="OQP62_000765"
     CDS             complement(5083..6603)
                     /gene="norR"
                     /locus_tag="OQP62_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide reductase transcriptional regulator
                     NorR"
                     /protein_id="HCS1720392.1"
                     /translation="MSFSVEVLAGIAIELQRGIGHQDRFQRLITTLRQVLACDASALL
                     RYESRQFIPLAIDGLAQDVLGRRFTLEGHPRLEAIARAGDVVRFPADSDLPDPYDGLI
                     PGQESLKVHACVGLPLFAGQNLIGALTLDAMTPEQFEVFSDEELRLVAALAAGALSNA
                     LLIEQLESQNMLPGSSGVFEPIKETHMIGLSPAMTQLKKEIEIVAGSDLNVLIGGETG
                     TGKELVAKAIHQGSPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE
                     MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREE
                     VLAGRFRADLFHRLSVFPLFVPPLRERGDDVVLLAGYFCEQCRLRLGLSRVVLSPGAR
                     RHLLNYGWPGNVRELEHAIHRAVVLARATRAGDEVVLEEQHFALSEDVLPAPSAESFL
                     ALPACRNLRESTENFQREMIRQALAQNNHNWAASARALETDVANLHRLAKRLGLKD"
     gene            6789..8228
                     /gene="norV"
                     /locus_tag="OQP62_000766"
     CDS             6789..8228
                     /gene="norV"
                     /locus_tag="OQP62_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic nitric oxide reductase
                     flavorubredoxin"
                     /protein_id="HCS1720393.1"
                     /translation="MSILVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEK
                     NVLIDTVDHKFSREFVQNLRSEIDLADIDYIIINHAEEDHAGALTELMAQIPDTPIYC
                     TANAIDSINGHHHHPEWNFKVVKTGDTLDIGDGKQLIFVETPMLHWPDSMMTYMTGDA
                     VLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNL
                     PVDMIATSHGVVWRDNPTQIVELYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGI
                     NEVDPNVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLR
                     FRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDLDALELCRQHGRDI
                     ARQWALAPLPETTQKTAPVEETTTCTAADLGPKMQCSVCQWIYDPALGEPLQDVAPGT
                     PWSDVPDNFLCPECSLGKDVFDVLATEAK"
     gene            8225..9358
                     /gene="norW"
                     /locus_tag="OQP62_000767"
     CDS             8225..9358
                     /gene="norW"
                     /locus_tag="OQP62_000767"
                     /EC_number="1.18.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavorubredoxin reductase NorW"
                     /protein_id="HCS1720394.1"
                     /translation="MSRGIIIIGSGFAARQLVKNIRKQDAHVPLTLIAADSMDEYNKP
                     DLSHVISQSQRADDLTRQLAGEFAEQFNLRLFPHTWVTDIDADAHVVKSQDKQWQYDK
                     LVLTTGATAFVPPIAGRELMLTLNSQQEYRACETPLRDAQRVLIVGGGLIGSELAMDF
                     CRAGKTVTLMDNAASLLASLMPPEVSSRLQHHLTDMGVHLLLKSQLQKLEKTEAGIRA
                     TLVSQHSIEVDAVIAATGLRPETALARRAGVAVNRGVCVDSYLQTSHPDIYAIGDCAE
                     INGQVLPFLQPIQLSAMYLAKNLLGGNAPLKLPAMLVKVKTPELPLHLAGETQRRDLS
                     WQITAESDGMIAKGMSGEGQLRAFVVSEDRMKEAFALLKTLSV"
     gene            complement(9455..11695)
                     /gene="hypF"
                     /locus_tag="OQP62_000768"
     CDS             complement(9455..11695)
                     /gene="hypF"
                     /locus_tag="OQP62_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HCS1720395.1"
                     /translation="MAIDTPSGVQLRIRGKVQGVGFRPFVWQLAQQLQLHGDVCNDGD
                     GVVVRLLEDPSQFIAALYQDCPPLARIDSVEHASLVWERAPTDFTIRQSAGGSMNTQI
                     VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCP
                     ECDSEYRDPYDRRFHAQPVACPSCGPHLEWRSQHERAEKEAALQAAVAQLNAGGIIAV
                     KGLGGFHLACDARNDNAVAMLRARKHRPAKPLAVMLPTAQTLPTAARSLLTTPAAPIV
                     LVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNYPLVMTSGNLSGKPPAITN
                     EQALDDLHDIADGFLLHNRDIVQRMDDSVVRDSGEMLRRSRGYVPDAIALPPGFRDVP
                     PILCLGADLKNTFCLVRGEQAVVSQHLGDLSDDGIQAQWREALRLIQSIYDFTPERIV
                     CDAHPGYVSSQWASEMRLPTETVLHHHAHAAACLAEHGWPLDGGEVIALTVDGIGMGE
                     NGALWGGECLRVNYRECEHLGGLPAVALPGGDLAAKQPWRNLLAQCLRFVPDWQNYPE
                     TAGLQQQNWSVLARAIERGVNAPLASSCGRLFDAVAAALRCAPASLSYEGEAACALEA
                     LASQCANVEYPVTMPLNGAQLDVAVFWRQWLNWQATPAQRAWAFHDALACGFATLMRQ
                     QATARGITTLVFSGGVIHNRLLRARLAFYLSDFKLLFPQRLPAGDGGLSFGQGVIAAA
                     RALREV"
     gene            complement(11841..12386)
                     /gene="hydN"
                     /locus_tag="OQP62_000769"
     CDS             complement(11841..12386)
                     /gene="hydN"
                     /locus_tag="OQP62_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport protein HydN"
                     /protein_id="HCS1720396.1"
                     /translation="MNRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRI
                     HVIKGVNVSTATLCRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYG
                     AMEVVVRPVVRNSGAGLNVRAEKAEANKCDLCHHREAGPACMAACPTHALICVDRNKL
                     EQLSAEKRRRAALDSTASLLF"
     gene            complement(12587..13396)
                     /locus_tag="OQP62_000770"
     CDS             complement(12587..13396)
                     /locus_tag="OQP62_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720397.1"
                     /translation="MLPGIGGKKNVKIIVWSGLLFLCLAARALATGVVGYLPMSDGEY
                     AQKRALKPLLILPYSVSPDQTWHFRQVGVSSVTLLPEPKKDNEWRISGKDRAGNSWVV
                     PVGRLINLAGNAQFYRADLDRNGIQDLVIWLGNPGLGLAPSAQYIIFTFLKNGRPCVF
                     EPWGFYTATDTGVDDLLDLQGNGRTQLLDMQFDSGYWITNLYQVKDARWQRVHGWFGR
                     LSYPALTRFNHYPGRKLIIKPIAGRNPQTDDLSLTQRCLIRGNVLPGVNQD"
     gene            complement(13423..13893)
                     /gene="hycI"
                     /locus_tag="OQP62_000771"
     CDS             complement(13423..13893)
                     /gene="hycI"
                     /locus_tag="OQP62_000771"
                     /EC_number="3.4.23.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation peptidase HycI"
                     /protein_id="HCS1720398.1"
                     /translation="MTDVLLCVGNSMMGDDGAGPLLAEMCAAQPKGNWVVIDGGSAPE
                     NDIVAIRELRPQRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDLLK
                     EDVGEVIFVGIQPDIVGFYYPMTQPIKDAVNIVYQRLEGWQGNGGFAALDAPEA"
     gene            complement(13886..14296)
                     /locus_tag="OQP62_000772"
     CDS             complement(13886..14296)
                     /locus_tag="OQP62_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase maturation HycH family
                     protein"
                     /protein_id="HCS1720399.1"
                     /translation="MSEQVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDC
                     LEAALTCPWDEYLAWIATLEAGSDARRKMEGVPKYGEIVIDFNHVQMLARAFDEARAA
                     QTPQQQEWSKLMLSMLHDIHQESAIYLMVRRLRD"
     gene            complement(14293..15060)
                     /gene="hycG"
                     /locus_tag="OQP62_000773"
     CDS             complement(14293..15060)
                     /gene="hycG"
                     /locus_tag="OQP62_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycG"
                     /protein_id="HCS1720400.1"
                     /translation="MSNLLGPRDANGIPVPMTVDESIASMKASLLKNIKRSAYVYRVD
                     CGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQS
                     APDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL
                     GLLEQKIHARAPGELDDQPAEILHPDMVQPLRVKVDRAACRLAGYRYGRQIADDYLTQ
                     LGQGEQQVARWLEAENDPRLTEIVIHLNHVVEEARIR"
     gene            complement(15060..15602)
                     /gene="hycF"
                     /locus_tag="OQP62_000774"
     CDS             complement(15060..15602)
                     /gene="hycF"
                     /locus_tag="OQP62_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycF"
                     /protein_id="HCS1720401.1"
                     /translation="MFTFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEHNPQQCIGCA
                     ACVNACPSNALTVETDLATNELAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWK
                     KEDFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLAHNGDSRAENHRESFETCPDCKR
                     QKCLVPSDRIELTRHMKEVS"
     gene            complement(15612..17321)
                     /gene="hycE"
                     /locus_tag="OQP62_000775"
     CDS             complement(15612..17321)
                     /gene="hycE"
                     /locus_tag="OQP62_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycE"
                     /protein_id="HCS1720402.1"
                     /translation="MFEEKLGQQYLAALHQAFPGVVMDEAWQTKDQLTITVKVNYLPE
                     VVEFLYYQQGGWLSVLFGNDERQLCGHYAVYYVLSMEQGTKCWITVRVEVDANKLEFP
                     SVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPA
                     PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR
                     GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL
                     EVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR
                     RDLLKEDMIQTRQLAQQMRRDVQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGP
                     MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLD
                     NLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT
                     LRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNS
                     PLK"
     gene            complement(17339..18262)
                     /locus_tag="OQP62_000776"
     CDS             complement(17339..18262)
                     /locus_tag="OQP62_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="respiratory chain complex I subunit 1 family
                     protein"
                     /protein_id="HCS1720403.1"
                     /translation="MSVFYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYR
                     DIIKLLGRQSIAPADSGWVFRLTPFVMVGVMLTIATALPVVTVGSPLPQLGDLITLIY
                     LFAIARFFFSIAGLDTGSPFTAIGASREAMLGVLVEPILLLGLWVAAQVAGSTHISNI
                     ADTIYHWPVARSIPLILALCACAFATFIEMGKLPFDLAEAEQELQEGPLTEYSGSGFA
                     VLKWGISLKQLVVLQMFVGVFLPWGQMETFSAGGLLLALVIAVVKLIVGVLVIALFEN
                     SMARLRFCATSRVTWAGFGFAFLAFVSLLAA"
     gene            complement(18265..20091)
                     /gene="hycC"
                     /locus_tag="OQP62_000777"
     CDS             complement(18265..20091)
                     /gene="hycC"
                     /locus_tag="OQP62_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461772.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit 3"
                     /protein_id="HCS1720404.1"
                     /translation="MSSLSLITSGVAWFAAAAVLAFLFSFHKALSGWIAGIGGAVGSL
                     CTAGAGFTALTSAVTVSGVMPFTGHMLQITPLNAIWLITLGLCGLFVSLFNIDWHRHP
                     QVKANGLLINLLMAAAVCAVVASNLGTMVVMAEIMALCAVFLTGGSKEGKLWFALGRL
                     GTLLLAIACWLVWQRYGTLDLGLLDQRAQQLPLGSDIWLLGVIGFGLLAGIIPLHGWV
                     PQAHANASAPAAALFSTVVMKIGLLGILSLSLLGGNAPLWWGVALLVLGMITAFVGGL
                     YALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIALNQPVLIALGLTGGLYHLLNHSL
                     FKSVLLLGAGSIWFRTGHRDIEKLGGIGKRMPVISIAMLVGLMAMAALPPLNGFAGEW
                     VIYQSFFKLGNSGAFVGRLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAEN
                     ASCAPILMGVSVVALAVCCVLGGVAAPWLLPMISTAVPLPLETAHTTVSQPMITLLLV
                     ACPLLPFIIMAMFKGNRLPSRSRGAAWVCGYDHEQSMVITAHGFAMPVKEAFAPVLKL
                     RKWLNPVSLVPGWQNAAAAGLFRRLALIELAVLVVIVVSRGA"
     gene            complement(20091..20699)
                     /gene="hycB"
                     /locus_tag="OQP62_000778"
     CDS             complement(20091..20699)
                     /gene="hycB"
                     /locus_tag="OQP62_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycB"
                     /protein_id="HCS1720405.1"
                     /translation="MNRFVIADSTLCIGCHTCEAACSETHRQHGLQSMPRLKVMLNEK
                     ESAPQLCHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEFSGS
                     RPLHIPANANTPKAPPAPPAPARVSTLLDWVPGVRAIAVKCDLCSFDEQGPACVRMCP
                     TKALHLVENTDIARASKRKRELTFNTDFGDLTLFQQAQSGDA"
     gene            complement(20845..21306)
                     /gene="hycA"
                     /locus_tag="OQP62_000779"
     CDS             complement(20845..21306)
                     /gene="hycA"
                     /locus_tag="OQP62_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase regulator HycA"
                     /protein_id="HCS1720406.1"
                     /translation="MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHH
                     AMSCAPERDLCFVLFEHFRIYVALADGFNSHTIEYYVETKDGEDKQLIAQAQLDIDGK
                     VDERVNNRDREQVLEHYLEKIASVYDSLYTAVETNSPVNLRQLVKGHSPAV"
     gene            21516..21872
                     /gene="hypA"
                     /locus_tag="OQP62_000780"
     CDS             21516..21872
                     /gene="hypA"
                     /locus_tag="OQP62_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HCS1720407.1"
                     /translation="MHEITLCQRALELIEQQASAYGAKRVTAVWIKIGAFSCVETSAL
                     SFCFDLVCRGTIAEGCKLHLEEQEAECWCEHCQQYVTLLTHRVRRCPQCHSDTLRIVA
                     DDGLQIRRIEIDETED"
     gene            21942..22814
                     /gene="hypB"
                     /locus_tag="OQP62_000781"
     CDS             21942..22814
                     /gene="hypB"
                     /locus_tag="OQP62_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HCS1720408.1"
                     /translation="MCTTCGCAEGNLYIEGDEHNPHSAFRSAPFAPAARPALNITGIK
                     TPDFTPSQTAEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAAR
                     QQLVLNLVSSPGSGKTTLLTETLMKLKDRVPCAVIEGDQQTVNDAARIRATGTPAIQV
                     NTGKGCHLDAQMIADAAPRLPLDDHGILFIENVGNLVCPASFDLGEKHKVAVLSVTEG
                     EDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIASAREVNPEIEIILISATSGEG
                     MDQWLAWLEAQRCA"
     gene            22805..23077
                     /gene="hypC"
                     /locus_tag="OQP62_000782"
     CDS             22805..23077
                     /gene="hypC"
                     /locus_tag="OQP62_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 3 maturation protein HypC"
                     /protein_id="HCS1720409.1"
                     /translation="MCIGVPGQIRAIDGNQAKVDVCGIQRDVDLTLVGSCDENGQPRL
                     GQWVLVHVGFAMSVINEAEARDTLDALQNMFDVEPDVGALLYGEER"
     gene            23077..24198
                     /gene="hypD"
                     /locus_tag="OQP62_000783"
     CDS             23077..24198
                     /gene="hypD"
                     /locus_tag="OQP62_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461778.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HCS1720410.1"
                     /translation="MRFVDEYRAPEQVMQLIEHLRERAALLPYTAERPLRIMEVCGGH
                     THAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDSCVEIASHPEVIFCTFGDAMRV
                     PGKQGSLLQAKARGADVRIVYSPMDALKLAQDNPTRKVVFFGLGFETTMPTTAITLQQ
                     AKQRDVRNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTEAYQFIAADF
                     HRPLVVAGFEPLDLLQGVVMLVEQKIAALSQVENQYRRVVPDAGNMLAQQAIADVFCV
                     NGDSEWRGLGVIESSGVHLTPEYQRFDAEAHFRPAPQQVYDDPRARCGEVLTGRCKPH
                     QCPLFGKTCNPETAFGALMVSSEGACAAWYQYRQQECEV"
     gene            24195..25205
                     /gene="hypE"
                     /locus_tag="OQP62_000784"
     CDS             24195..25205
                     /gene="hypE"
                     /locus_tag="OQP62_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417210.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HCS1720411.1"
                     /translation="MNNIQLAHGSGGQAMQQLINSLFMEAFANPWLAEQEDQARLELA
                     QLTAEGDRLAFSTDSYVIDPLFFPGGNIGKLAICGTANDVAVSGAIPRYLSCGFILEE
                     GLPMETLKSVVNSMAATAREAGIAIVTGDTKVVQRGAADKLFINTAGMGAIPADIHWG
                     AQTLSVGDVLLVSGTLGDHGATILNLREQLGLDGELASDCAVLTPLIQTLRHIDGVKA
                     LRDATRGGVNAVAHEFAASCGYGIELSESALPLKPAVRGVCELLGLDALNFANEGKLV
                     IAVERQAADRALAALRAHPLGRDAALIGEVVERKGVRLAGLYGVKRTLDLPHAEPLPR
                     IC"
     gene            25424..27502
                     /gene="flhA"
                     /locus_tag="OQP62_000785"
     CDS             25424..27502
                     /gene="flhA"
                     /locus_tag="OQP62_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase transcriptional activator
                     FlhA"
                     /protein_id="HCS1720412.1"
                     /translation="MSYTPMSDLGQQGLFDITRTLLQQPDLASLSEALSQLVKRSALA
                     DSAGIVLWQAQSQRAQYYATRENGRPVEYEDETVLAHGPVRRILSRPDALHCNFHEFT
                     ETWPQLAASGLYPEFGHYCLLPLAAEGRIFGGCEFIRQEDRPWSEKEYDRLHTFTQIV
                     GVVAEQIQNRVNNNVDYDLLCRERDNFRILVAITNAVLSRLDINELVSEVAKEIHHYF
                     NIDAISIVLRSHRKNKLNIYSTHYLDEHHPAHEQSEVDEAGTLTERVFKSKEMLLINL
                     NERDPLAPYERMLFDTWGNQIQTLCLLPLMSGKTMLGVLKLAQCEEKVFTTANLKLLR
                     QIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYNVL
                     KQVEMVAQSDSTVLILGETGTSKELIARAIHNLSGRSGRRMVKMNCAAMPAGLLESDL
                     FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN
                     KLIQTDVRLIAATNRDLKKMVADREFHNDLYYRLNVFPIQLPPLRERPEDIPLLVKAF
                     TFKIARRMGRNIDSIPAETLRTLSGMEWPGNVRELENVVERAVLLTRGNVLQLSLPDM
                     TAVTPDTSPVATESAKEGEDEYQLIIRVLKETNGVVAGPKGAAQRLGLKRTPLLSRMK
                     RLGIDKDALA"
     gene            complement(27564..27908)
                     /locus_tag="OQP62_000786"
     CDS             complement(27564..27908)
                     /locus_tag="OQP62_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide-stimulated promoter family
                     protein"
                     /protein_id="HCS1720413.1"
                     /translation="MPGKRIAREKLTIKKMIALYESQCPQASAVQGHYDALFAYAQKR
                     LDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPVLTVRHLIDDKRP
                     VPELPEKYQRKK"
     gene            28090..29007
                     /gene="sitA"
                     /locus_tag="OQP62_000787"
     CDS             28090..29007
                     /gene="sitA"
                     /locus_tag="OQP62_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter substrate-binding
                     protein SitA"
                     /protein_id="HCS1720414.1"
                     /translation="MTNLHRLKTLLIAGIVAILALSPAYAKEKFKVITTFTVIADMAK
                     NVAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQLILANGLNLERWFARFYQHLSG
                     VPEVVVSTGVKPMGITEGPYNGKPNPHAWMSAENALIYVDNIRDALVKYDPDNAQIYK
                     QNAERYKAKIRQMADPLRAELEKIPADQRWLVTSEGAFSYLARDNDMKELYLWPINAD
                     QQGTPKQVRKVIDTIKKHHIPAIFSESTVSDKPARQVARESGAHYGGVLYVDSLSAAD
                     GPVPTYLDLLRVTTETIVNGINDGLRSQQ"
     gene            29004..29825
                     /gene="sitB"
                     /locus_tag="OQP62_000788"
     CDS             29004..29825
                     /gene="sitB"
                     /locus_tag="OQP62_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter ATP-binding
                     protein SitB"
                     /protein_id="HCS1720415.1"
                     /translation="MSQSAITVDQVTVTYRNGHTALRDATFQVPGGSIAALVGVNGSG
                     KSTLFKALMGFVHLARGDITILQQSVNQALKKNLIAYVPQSEEVDWSFPVLVEDVVMM
                     GRYGHMGWLRRPTAHDHACVDAALARVDMQEYRHRQIGELSGGQKKRVFLARAIAQDG
                     QVILLDEPFTGVDVKTEARIIDLLRELRDEGRTMLVSTHNLGSVTEFCDYTVMIKGTV
                     LASGPTETTFTAANLELAFSGVLRHIALSGGEEHIITDDERPFISRRVASGGKSS"
     gene            29822..30682
                     /gene="sitC"
                     /locus_tag="OQP62_000789"
     CDS             29822..30682
                     /gene="sitC"
                     /locus_tag="OQP62_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter permease subunit
                     SitC"
                     /protein_id="HCS1720416.1"
                     /translation="MNWLVEPFGYQYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGD
                     ALSHSIVPGVAGAWMLGLPFSLGAFLSGGLAAGSMLFLNQRSRLKEDAIIGLIFSSFF
                     GVGLFMVSLNPMSVNIQTIILGNVLAIAPADITQLAIIGAVSLTILLLKWKDLMVVFF
                     DETHARSIGLNPGRLKLLFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFP
                     RLLMIAVVIGSLTSFLGAWLSYWLDGATGGIIVVMQTLLFITAFIFAPKHGLLANRRR
                     ARLQKEPTCS"
     gene            30673..31521
                     /gene="sitD"
                     /locus_tag="OQP62_000790"
     CDS             30673..31521
                     /gene="sitD"
                     /locus_tag="OQP62_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter permease subunit
                     SitD"
                     /protein_id="HCS1720417.1"
                     /translation="MFLATFLEPFQFDFMVNALMVSVIVAIPCALLSVFLVLKGWALM
                     GDAMSHAVFPGVVLAYIVGIPLAIGAFIAGLFCAIATGYLDDNSRIKRDTVMGIVFSG
                     MFGAGLVLYVSIQSEVHLDHILFGDMLGVSLGDIVQTSVIALGIALIIGLKWKDLLLH
                     AFDPHQAKASGLNTTLLHYGLLCMIALTIVATLKSVGIILSISLLIAPGAIAILLTRR
                     FARALGLAVSLSVITAFAGVYLSFYLDSAPAPTIVVLFAIVFIAVFIYATWRDRRNEI
                     VPEAQG"
     gene            complement(31798..32496)
                     /locus_tag="OQP62_000791"
     CDS             complement(31798..32496)
                     /locus_tag="OQP62_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001613266.1"
                     /note="activates Salmonella pathogenicity island 4 genes
                     and weakly represses Salmonella pathogenicity island 1
                     genes; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1720418.1"
                     /translation="MFKQKYPEKCVKTCNSLTALLHSLSDMPDAGLILALNPHEHVYL
                     FHALQARLQNRKVLVVADRLYYIDRCVLQYFGVMDYVLKDELSCAIRSEREKLRLPEA
                     WLRFCHRPQKKTVAATYAFNAGETPEEVLFNINQYAWWNLPPGVTQAKYALLILLSSG
                     HPAIELAKKFGLGTKTVSIYRKKVMYRLGMDSSPLSLFRGLKLDAHLQRTAFAHNPAV
                     PDDNCALPIAVGMN"
BASE COUNT         7446 a         9170 c         8868 g         7026 t
ORIGIN      
        1 taaaaaccct acaggagaga acaatgatcg aaaccattac acatggtgcg gagtggttca
       61 tcgggttatt ccagaaaggc ggtgaggtgt ttaccggtat ggtgacaggt attcttccgc
      121 tactgataag cctgctggtt atcatgaatg cgctcatcaa ttttatcggc cagcagcgta
      181 ttgagcgttt tgcccaacgc tgcgccggaa atccgctatc ccgctacctg cttttaccgt
      241 ttatcgggac gtttgttttt tgtaatccga tgaccctgag tctgggacgc tttatgccgg
      301 agaagtacaa gccgagctat tacgcggcgg cctcctatag ctgtcactcc atgaacggtc
      361 tgtttccgca tatcaatccc ggcgaactgt ttgtttatct gggtatcgcc agcggactca
      421 ccacgttagg gcttcctctc ggcccgctcg cggtgagcta tctgctggta ggtctggtga
      481 cgaacttctt ccgcggttgg gtcaccgatc tcaccaccgc tatttttgag aaaaaaatgg
      541 ggattcaact tgagcagaaa gttcatctga caggagcggt atcatgacac gggttcgcat
      601 tgagaaaggt gccggcggct ggggcggccc gcttgaactg gacgttacgc caggcaaaaa
      661 gatcgtctat atcacagccg gtacgcgccc ggcgatcgtc gacaaactgg cgcaactaac
      721 aggctggcaa gcggtggacg gctttaaaga aggcgaaccg ccggaagcgg agatcggcgc
      781 ggccattatc gactgcggcg gtacgctgcg ctgcggtatc tacccgaaac gccggattcc
      841 aaccattaat attcactcga cgggtaagtc cggcccactg gcgcagtata ttgttgaaga
      901 tatttatgtc tccggcgtaa aagaagaaaa cattactcta gtcggcgaaa catctgccag
      961 accccagcct gccaaaacga cattaggacg tgactacgac accagcaaaa aaatcaccga
     1021 gcagagcgac gggctgctgg caaaagtcgg tatgggaatg ggttctgccg tggcggtact
     1081 gttccagtcc ggtcgcgaca ccattgatac ggtcctgaaa acaattctgc cgtttatggc
     1141 gttcgtttcg gcgctaatcg gcatcattat ggcctcaggt cttggcgact ggatcgccca
     1201 cggcctggcg ccattagcca gccatccact ggggctggtg acgctggcat tgatctgctc
     1261 tttcccgctg ctgtcgccct ttctcggccc aggcgcggtt atcgctcagg ttattggcgt
     1321 tctgatcggc gttcagatag gtctgggcaa tatccccccg catctggcgc tgcccgccct
     1381 gttcgcgatt aacgcgcagg cggcctgcga ctttatcccg gtcggcctgt cactggcgga
     1441 agcgaaacaa gacaccgttc gcgtcggcgt accttctgtg ctggtcggac gcttcctgac
     1501 cggcgcgccc acggtactta tcgcctggtt tgtttccggc tttatctatc aataagaggt
     1561 tcagacatga gcgtgattta tcaaaccacc atcacccgca tcggccagag cgcgatggag
     1621 gcgctcggcg aaaagatgct gattacgttt cgggaaggcg cgccggcgga tatcgaagaa
     1681 ttttgcttca tccattgtca tggcgaactg accggcgcgc tgcagcctgg cgcgcggtgt
     1741 gaactgggcc aacattgcta tccggtcacg gcggtcggca gcgtagccga gcaaaacctg
     1801 cgtgaactgg ggcatatcac cttgcgcttt gatggtctgc gcgaagcgga atttcccggc
     1861 accgtacacg ttgcggggcc tgtaccggac gatatcgcgc cgggctgtat tttgacgttt
     1921 gtcgcttaag gagaaaaaac atgaatcaag ttgccgttgt cattggcgga ggccagaccc
     1981 tgggggcatt cctttgccgt gggcttgcag aagaaggata ccgcgtggcg gtcgttgata
     2041 ttcaaagcga taaagccgcg aatgtcgccc aggaaattaa cgccgatttt ggcgaaggta
     2101 tggcctacgg ttttggcgcc gacgccacca gcgagcagag cgtgctggcg ctgtcccgcg
     2161 gcgtagacga gattttcggg cgcgtcgatc tgctggttta cagcgcgggt atcgccaaag
     2221 cggcgtttat cagcgatttc cagttgggcg attttgaccg ctcgctacag gtgaatctgg
     2281 tgggctattt cctctgcgcc cgtgagtttt cccgcctgat gatccgcgac ggcattcagg
     2341 ggcgcattat tcagattaac tctaaatccg gcaaagtggg cagtaaacac aactccggct
     2401 acagcgcggc gaaattcggc ggcgtggggt taacccagtc tctggcgctg gacctggcgg
     2461 aatacggcat taccgtacac tcgctgatgc tcggcaacct gttgaaatcg ccgatgttcc
     2521 agtcattgct gccgcaatac gccactaaac tgtgcattaa gcccgacgag gtggaacagt
     2581 attacattga taaagtaccg ctcaaacgcg ggtgtgatta tcaggatgtg ctgaacatgc
     2641 tgctatttta tgccagcccg aaagcgtctt attgcaccgg gcagtcgatc aacgtaaccg
     2701 gcggtcaagt gatgttctga ccgtgaattg ccggatggcg ccgtaggccg gataagacgg
     2761 ttacgccgcc atcaggcaaa acaacaggag cacattatgg tttccactct gattaccgtc
     2821 gccgttatcg cctggtgtgc acaactggcg ctgggcggct ggcagatttc ccgctttaat
     2881 cgggctttcg ataaacttag ccaacaggga cgggtcggcg tcgggcgctc cggcgggcgt
     2941 tttaagcccc gggtggtggt tgccgtggcg ctggacgaac agcagcgggt gacggacact
     3001 ttattgatga aaggccttac ggtattcgcc agaccggtta aaattgccgc aatgcaagga
     3061 aaacatttgc atgaattaca gcctgatgtg atctttcccc atgattcgct cgcgcagaat
     3121 gcactatcat tggcgcttaa actgaaacat gggtaatttc gttgtgaatg cgaatagctt
     3181 gcgaaattat cattttgcaa cctataccct aaataattcg agttgcagga aggcggcgac
     3241 gcagcgaatc ccctggaacg tacatcaata cgtgaccggg gtgagcgagg aaagccaacg
     3301 cacatgcagc gtgaagtatt acgggtaaat acataagtca gggtaatcac gcctatgaaa
     3361 cctcgtcagc gtcaggccgc gattctggag cacctgcaaa aacagggaaa atgctcggtt
     3421 gaagaactgg cccagtactt tgacacgaca ggcaccacta tccgtaaaga tctggtcatt
     3481 ctggaaaatg ccggaaccgt catccgcacc tatggcggcg tggtgttgaa taaagaagag
     3541 tccgatccgc ctattgatca caaaacgctt atcaacaccc acaaaaaagc gctgatagcc
     3601 gcagccgctg tgaaatatat ccatgatggc gattccatta ttctggacgc cggaagtacc
     3661 gtgttacaga tggtgccgtt gctttcgcgt tttagcaaca tcacggtgat gaccaacagc
     3721 ctccatattg ttaacgcgct atcggaactg gacaacgaac aaactatcct gatgcccggc
     3781 ggcaccttcc gtaaaaaatc ggcgtcgttt cacggtcaac tggcggaaaa cgcctttgag
     3841 caattcagct ttgataaact tttcatggga actgacggta ttgacctgaa tgtcggtgtg
     3901 accacgttca atgaggttta caccgtcagt aacgcaatgt gcaatgcagc acgcgaggtg
     3961 attctgatgg cggactcctc aaaatttggt cgtaaaagcc ccaatgtggt gtgcagtctg
     4021 gaaaccgtcg acaaactgat cacggacgcg gggatcgatc cggcatttcg tcaggcgctg
     4081 gaagcaaaag ggattgaagt aatcataacc ggagaaagca atgagtgatg cactactaaa
     4141 cgcgggccgt cagaccttaa tgctggagct acaggaagcc agccgtctgc cggagcgtct
     4201 gggcgatgat tttgtccgcg ccgccaatat cattattcac tgtgaaggca aagtgatcgt
     4261 ttccggtatt ggtaaatcag gtcatattag taaaaaaatc gccgcgacgc ttgccagtac
     4321 cggtactccc gctttttttg ttcatccggc ggaagcactg catggcgatc tggggatgat
     4381 tgaaagccgc gacgtgatgt tatttatctc ctattccggc ggcgcaaaag aactcgacct
     4441 catcatcccg cgtctggaag ataaatccgt cgcgctgctg gcgatgaccg gtaaacctca
     4501 ctctccgctg gggcgagcgg caaaagccgt tctggatatt tccgtcgagc gtgaagcctg
     4561 tccgatgcat ctggcgccga catccagtac cgtcaatacg ctgatgatgg gcgatgcgct
     4621 ggcgatggcg gtcatgcagg cgcgcggttt taacgaagaa gatttcgccc gttcgcatcc
     4681 ggctggcgca ctgggcgcgc gtttgctcaa taatgtgcat cacctgatgc gccagggcga
     4741 tgcaataccg caggtgatgc tcgccaccag cgtgatggat gccatgctgg aacttagccg
     4801 taccgggctg gggctggtgg cggtttgcga tgagcaacat gttgtgaaag gcgtctttac
     4861 cgacggcgac ctgcgtcgct ggctggtagg cggcggcgcg ctcaccacgc cagtaagcga
     4921 agccatgacg cccaacggta ttacgctcca ggcgcaaagc cgcgccattg acgccaaaga
     4981 gctcctgatg aaacgcaaaa ttaccgccgc gccagtggtc gatgaaaacg gcaaactcac
     5041 cggcgccatt aacctgcagg atttctacca ggcggggatt atctaatcct tcagtcccag
     5101 acgcttcgcc agccgatgca ggttggcgac gtcggtttcc agcgcccgcg cactggccgc
     5161 ccagttgtga ttattttgcg ccagcgcctg gcgaatcatc tctcgctgga agttctccgt
     5221 cgattcgcgc aaattgcggc aggccggcaa cgccagaaag ctttccgcag acggcgcggg
     5281 taaaacgtcc tctgacaagg caaaatgctg ctcctccagt accacctcat cccctgcccg
     5341 ggtcgctctc gccagtacaa ccgcacggtg aatggcatgt tccagctccc ggacgttgcc
     5401 cggccagcca tagttgagca aatggcggcg cgcgccggga ctcagtacca cgcgggacag
     5461 ccccagccgc agtcggcact gctcgcaaaa atagcccgcc agcaacacca catcatcgcc
     5521 gcgctcgcgc agcggcggca caaagagcgg gaaaacgctc aggcgatgga acaggtcggc
     5581 gcgaaaacgc cccgccagca cctcttcacg caggtcacgg ttggtcgccg ccaacacccg
     5641 cacatccacg cgcaggctac gatcgtcgcc gacgcgctga atatcgccat actgcaacac
     5701 gcgaagtagc ttggcctgta gcgccagcga cagttcgcca atctcatcca gaaacagcgt
     5761 accgttatcc gccatttcaa acttaccgct acgattactg atagccccgg taaaagcccc
     5821 ttttacatga ccaaacaact cgctctccgc cacgctttcc ggcagcgcgg cgcagttgag
     5881 atagaccagc ggattgaccg ctctggggga gccctggtga atagctttcg ccaccagctc
     5941 tttaccggtc cccgtttcac cgccgatcag cacgttaaga tcggagcccg ccacaatctc
     6001 gatctctttt ttcaactgcg tcatcgccgg cgacagaccg atcatgtgcg tctcttttat
     6061 cggttcaaac acgcctgacg accccggcag catgttctgg ctttccagtt gttcaattaa
     6121 cagcgcatta ctcaatgccc cggcggccag cgcggcgaca agccgtagtt cttcatcgct
     6181 aaatacctcg aactgctccg gcgtcatagc atcaagggtc agcgcaccga tgaggttctg
     6241 tccggcaaac agcggcagac caacacaggc gtggactttc aggctttcct gtccgggaat
     6301 taacccgtca tatggatcgg gtaaatcgct atcagccgga aaacgcacca cgtcccccgc
     6361 gcgggcgatg gcttccaggc gcggatgccc ttccagggta aaacgtctgc cgaggacgtc
     6421 ctgcgccagg ccatcaatcg ccagtggaat aaattgtcgt gattcataac gcagcagcgc
     6481 cgaggcgtcg cacgccagca cctgacgcag cgtagtaatc agccgctgaa aacgatcctg
     6541 atgcccaatg ccgcgttgta actcaatggc gatgcccgcc aatacctcca cggaaaaact
     6601 catggttacc tcattgtcat tttgacaatc tatagtgtca tattgacagc atcatttata
     6661 gtctttttga ctataccaaa aatacaaaat tattataatt tcatataaat caataagatg
     6721 taaagttggc acactacctg caataagcaa aacaactttt tgcaaacgtt gaatgaattg
     6781 aggtggttat gtctattctg gttaaaaata atattcattg ggttggccaa cgcgactggg
     6841 aagtacgtga ttttcacggc actgaataca aaacgctgcg tggcagcagc tataacagct
     6901 atctcattcg tgaagaaaag aatgtgctga tcgataccgt cgatcataag tttagccgtg
     6961 agtttgtgca aaatctgcgc agtgaaatcg acctcgcgga catcgactac atcatcatta
     7021 accatgccga agaagaccat gcaggcgcgc tgaccgaact gatggcgcag atcccggaca
     7081 cgcctatcta ctgtaccgcc aacgccattg actctatcaa cggccatcac catcacccgg
     7141 aatggaattt taaggtggtg aaaaccggcg atacgctgga tatcggcgac ggcaagcagt
     7201 tgatcttcgt ggaaacgccg atgctgcact ggccggacag catgatgacc tatatgaccg
     7261 gcgacgcggt gttattcagc aacgacgcct ttggtcagca ctactgcgac gagcacctgt
     7321 tcaatgatga agtggaccaa actgaactgt ttgaacaatg ccagcgctac tacgccaata
     7381 tcctgacgcc gttcagccgt ctggtaacgc caaaaattac cgaaatcctc ggcttcaacc
     7441 tgccggtgga tatgattgcc acctcacacg gcgtggtatg gcgcgacaac ccaacgcaaa
     7501 tcgtggagct gtatctgaaa tgggcggcag attatcagga agatcgtatc actattttct
     7561 acgataccat gtcgaacaat actcgcatga tggcggatgc catcgcacag ggtatcaatg
     7621 aagtggaccc caacgtggcg gtcaaaatct ttaacgtcgc ccgcagcgat aaaaatgaaa
     7681 tattgaccaa cgtcttccgt tcgaaaggcg tgctggtcgg cacttctacc atgaacaacg
     7741 tgatgatgcc gaaaatcgct ggtctggtgg aagagatgac cggcctgcgc tttcgcaaca
     7801 aacgcgccag cgccttcggt tctcatggct ggagcggcgg cgcggtggat cgactgtcca
     7861 cgcgcttaca ggatgccggt tttgaaatgt ccctgagtct gaaagcgaaa tggcgtccgg
     7921 atctggatgc gctggagttg tgccgtcagc atggtcgcga catcgcccgt cagtgggcgc
     7981 ttgctccgct gccggaaacc acacagaaaa ccgcgccagt cgaagaaacc acaacctgca
     8041 ccgccgcaga cctcggcccc aaaatgcaat gcagcgtatg ccagtggatt tacgaccctg
     8101 cgctgggcga gccgttgcag gatgtcgcgc cgggtacgcc gtggagcgac gtgccggata
     8161 acttcctgtg cccggaatgt tcattaggta aagacgtgtt cgacgtactg gcgacggagg
     8221 caaaatgagt cgggggatca tcattattgg gtcgggcttc gccgcccgcc agctcgtcaa
     8281 aaatatccgt aaacaagatg cgcatgtgcc gttaactctg attgcggcgg acagcatgga
     8341 tgagtacaac aagcccgatc tcagccacgt tatcagccag tcgcagcgcg ccgatgatct
     8401 cacccgccag ttagcggggg aatttgctga acagtttaat ctacgactgt tcccgcatac
     8461 ctgggttact gacattgatg ccgatgccca tgtggtgaaa agtcaggata agcagtggca
     8521 gtacgacaag ctggtactga cgaccggggc gacagccttt gtgccgccga ttgcaggacg
     8581 tgagttaatg cttactttga atagccagca ggagtaccgc gcctgtgaga caccactgcg
     8641 cgacgcgcag cgagtgctga ttgtcggcgg cggtctcatt ggcagtgaat tagcaatgga
     8701 tttctgccgc gccgggaaaa cggtaacgct gatggataac gccgccagcc ttctcgcctc
     8761 actgatgcca ccggaagtga gcagtcgctt acagcatcac ctgaccgata tgggggtgca
     8821 tctgctgctg aaatcgcagt tgcaaaaact ggagaaaacc gaagccggta tccgcgctac
     8881 gctggtaagc cagcatagta ttgaggtcga tgcggtgatt gccgccaccg gcttacgccc
     8941 ggagaccgct ctggcgcgcc gcgccggggt agccgtcaac cgcggcgtct gcgtggatag
     9001 ctatctacag accagtcacc cggatattta tgcgatcggc gattgcgcgg aaatcaatgg
     9061 tcaggtgctg cccttcctgc aaccgatcca gttaagcgcg atgtacctgg cgaaaaatct
     9121 gctcggcggc aacgcgccgc tgaagctacc ggcgatgctg gtcaaagtca aaacgccgga
     9181 actgccgctg catctggcgg gagaaactca gcgccgcgat ttaagctggc agattaccgc
     9241 agaatctgac ggtatgattg ccaaaggcat gagtggagaa ggccagctac gcgcctttgt
     9301 ggtgagtgaa gaccgcatga aagaggcctt tgcactgctg aaaacgttgt cggtataagc
     9361 ctgtgatgcc ggatagcgcc gcttcgcgtc ttatccggcc tacgagtgag catctgttta
     9421 cacgccggat aaggcgcagc cgccatccgg cgccctacac ttcccttaac gctcgcgctg
     9481 cggcaatcac gccctgtcca aacgacagtc cgccgtcgcc cgccggtaac cgctgcggaa
     9541 ataacaattt aaaatcagaa agataaaagg caagacgcgc gcgcagtaag cggttgtgta
     9601 tcaccccgcc gctgaagacc agagtggtta tcccccgcgc cgtagcctgt tggcgcatta
     9661 gcgtggcaaa cccgcacgcc agcgcatcat gaaaagccca ggcgcgttgc gcgggcgtgg
     9721 cctgccagtt caaccattgc cgccagaaaa cagcgacgtc cagttgagcg ccgttaagcg
     9781 gcatcgttac cggatactca acgttagcgc attgagaggc cagcgcctcc agcgcgcagg
     9841 cggcctcgcc ctcatagcta agcgatgctg gcgcgcagcg aagcgcggca gccaccgcgt
     9901 caaacaaccg cccgcaggaa gaggccaacg gggcattgac gccgcgctca atggcgcgcg
     9961 ccaggacact ccagttttgc tgttgcagcc ccgctgtctc cgggtaattc tgccagtccg
    10021 gcacaaagcg caggcactgc gctaacagat tacgccacgg ctgtttggca gccagatcgc
    10081 ctcccggcag cgccacggcg ggtaaaccgc ctaaatgttc gcattcgcga taattgaccc
    10141 gcaaacattc tccgccccat agcgcgccat tctcacccat gccgataccg tctaccgtca
    10201 gggcaatcac ctctccgccg tccagcggcc aaccatgctc ggccaggcaa gccgccgcat
    10261 gggcatgatg gtgtaacacc gtctctgtcg gcagacgcat ctcactggcc cactgactgg
    10321 aaacatagcc cggatgcgca tcacagacga tacgctctgg cgtaaaatcg tagattgact
    10381 ggatcaaacg caatgcctcg cgccactgcg cctggatacc gtcatcgctg agatcgccta
    10441 aatgttggct gacaaccgcc tgttcgccgc gtaccagaca gaacgtgttt ttcagatccg
    10501 cgcccagaca aagtatcggc ggcacatcgc gaaatccggg cggcaacgca atcgcgtccg
    10561 gcacgtatcc ccgcgaacga cgcagcattt cgccgctgtc gcgcacgaca gagtcgtcca
    10621 tgcgctgtac aatgtcgcga ttgtgcaaca gaaaaccatc ggcaatatcg tgtaaatcgt
    10681 ccagcgcctg ttcgttggtg atggcgggcg gtttgccgct caggttgccg gatgtcatca
    10741 ccagcgggta attgagtgcc tgcaacaaga gatgttgcaa tgggttggct ggcagcatca
    10801 cgcccacttc cgtaagtcct ggcgcgatgc cctcactcag cgaaggtaca tactgcttat
    10861 ccaccagtac aatcggggcc gctggcgtgg tcagcagcga acgcgccgcg gtcggcagcg
    10921 tttgcgccgt gggcaacatc accgccaatg gtttcgccgg acgatgttta cgcgcccgca
    10981 gcatcgccac tgcgttatcg ttgcgcgcgt cgcaggccag atgaaaacca cccagccctt
    11041 taacggcaat aatgcctccg gcgttcagtt gggcgaccgc cgcctgcaaa gccgcctctt
    11101 tttccgctcg ttcatgttgg ctccgccact caagatgcgg cccgcatgac ggacaggcaa
    11161 cgggctgggc atgaaaacgg cgatcgtacg gatcgcggta ttcgctgtcg cattccggac
    11221 acaagggaaa cgccgccatc accgtaaatg gccggtcata gggcatagcg cgaataatgg
    11281 tgaagcgtgg tccgcagtgg gtgcaattga tgaaaggata acggtagcgc cgctcgcctg
    11341 gggtattcat ctcggcaaga catgccgggc aggtcgccgc atccggcacg atttgcgtgt
    11401 tcatcgaacc gcctgcgctc tgacgaatgg tgaaatccgt cggtgcgcgc tcccatacca
    11461 acgacgcgtg ttcaacgctg tcaatgcgcg ccagcggcgg gcaatcctga tagagcgcgg
    11521 caataaattg cgacggatct tccagcagcc gaacgacgac gccgtcgccg tcattacaca
    11581 cgtcgccgtg taattgcaac tgctgcgcca gctgccagac aaaaggacga aaaccgacgc
    11641 cctgtacttt gccccgaatg cgtagctgta cgccggaagg tgtgtctatc gccatcttat
    11701 tttcccgcca tcatcgaacc cggatgcctg atggcgcgac gcttatcagg cctacaaccg
    11761 cacggaccgt agaccggata aggcattgat gccgccatcc ggcaatgctt tgtggcgtat
    11821 tctacgcgca atcgcagaaa tcagaaaagc agcgatgccg ttgaatccag cgccgcacga
    11881 cggcgttttt ccgcgctcag ctgttcaagc ttattgcggt ccacgcagat gagggcgtgc
    11941 gttgggcaag cggccataca ggccggaccg gcttcacggt ggtgacacag atcgcacttg
    12001 ttggcttcgg ctttttcggc acgcacgttt agccccgcgc cgctattgcg aaccaccgga
    12061 cgaaccacca cttccatggc gccgtaagga catgccacta cgcaagtttt acagccaatg
    12121 cagcgttcct gcatcacatg aacaaagcct ttgtcacggc tgatggcacc attcgggcaa
    12181 acgttggcgc acggcgcatc ttcacactgg cgacacagcg ttgccgtgga aacgttcacg
    12241 cctttgataa catggatacg aggtaaaaag gtttcagggg tcagcgatgc gcaatcctga
    12301 ttttcctgat gggatacgac gcaagccact tcacaggtac ggcaaccaat gcacttactc
    12361 gcgtctgcaa tgatgaaacg gttcatcaaa ttctccagca ataacagatg atgtgccgat
    12421 atatacacga atcgtgccaa tttttatttc attgttattt aagaatattc tttctatttt
    12481 cgtgagcatt tacgtgtcat cgtcacaagt gtcgatgaca cgtaatgtcg ccagtggtgg
    12541 tcaagatttg cagtgatagc cagccaactc tgcacagaaa ctggcatcaa tcctgattaa
    12601 cgcctggcaa tacgttaccg cgtattaaac agcgctgcgt aagggaaaga tcgtccgttt
    12661 gcggattcct tccggcaata ggtttgataa ttaatttacg gccaggatag tgattaaagc
    12721 gggtcagcgc cggataactc aaccggccaa accagccgtg tacgcgctgc cagcgggcgt
    12781 ccttcacctg atataaattg gttatccagt agcctgagtc aaactgcata tccaacagtt
    12841 gcgtgcgacc attgccctgt aaatcaagca aatcatcgac gccagtatcg gtggcggtat
    12901 aaaaccccca cggttcaaag acgcaggggc ggccattctt gagaaaggtg aaaatgatgt
    12961 attgcgcgct cggcgccagg cccaacccag gattgcccaa ccagataacc aagtcctgaa
    13021 tgccgttacg atcgaggtca gcgcgataaa attgcgcatt acccgccaaa ttaatcagcc
    13081 ttcccaccgg gacaacccac gaattaccgg ctctgtcttt tccgctaatc cgccattcgt
    13141 tatctttttt cggctccggc agtagcgtca cgctactgac tccgacctgg cgaaaatgcc
    13201 aggtctggtc gggcgataca gaataaggca ggatcaaaag cggcttcagc gcacgctttt
    13261 gcgcatattc accgtcgctc atcggcaggt aaccgacaac accggtagcc agtgcgcgtg
    13321 cggcgaggca gagaaatagc agtccgctcc atacgataat cttcacgttc ttcttaccgc
    13381 ctatgccggg taacacaaat ccatccagaa tgagtacgca ttttacgcct ccggcgcgtc
    13441 cagcgcggca aatccgccgt ttccctgcca gccttccagg cgctgataga cgatgtttac
    13501 cgcgtcctta atcggttgag tcatcggata ataaaacccg acgatatccg gctggatacc
    13561 aacaaaaatc acctcgccga catcctcttt cagcagatcg ataaggtagt tcagcggcat
    13621 attgtgggtg gtcatcataa acatttcggc gatatcatcc ggatcgatga tgcggatctc
    13681 gcccggatta agtcccatat cggtggcgtc gacaatcaac agacgctgcg ggcgcagttc
    13741 gcgaatcgcc acaatgtcgt tttccggcgc gctgccgcca tcgatgacaa cccagttgcc
    13801 cttcggctgc gccgcgcaca tttccgccag taatgggcct gcgccgtcgt cgcccatcat
    13861 gctgttgccg acacagagta aaacgtcagt cacgaagcct cctcaccatc aggtagatgg
    13921 cgctttcctg atgaatgtca tgcagcatac tgagcatcag tttgctccat tcttgctgct
    13981 gcggggtctg cgcggcgcgc gcctcatcaa acgcgcgcgc cagcatttgc acatggttga
    14041 aatcgatgac gatctcgcca tacttcggca cgccttccat tttacgccgg gcatcgctac
    14101 cggcttccag ggtggcgatc cacgccagat actcatccca tgggcaggtg agcgcggcct
    14161 ccaggcaatc gataaccccc aggtggtgac caatcgccag gctgtaatag acaacctgct
    14221 gcgcctcggc gggcgtcgca tcgttctcat caataaactt acggctcagt tgactgaaca
    14281 ccacctgttc gctcatcgga tacgcgcctc ttcaacaaca tgattgagat ggatgacaat
    14341 ttcggttaaa cgcggatcgt tttccgcttc cagccaacgc gccacttgct gctcgccctg
    14401 ccccaactgt gtcaggtaat catcggcgat ctgacgacca tagcgataac ccgccagccg
    14461 gcacgccgcg cgatccacct tcacgcgcag cggctgcacc atatccggat gcaggatctc
    14521 tgcgggctga tcgtccagct cacccggcgc gcgggcgtgg attttctgct ccagcaggcc
    14581 aagcgccatt gcaaagccat acagcgtggc ggcaggcgtt ggcgggcagc ctggaatgta
    14641 cacatccacc gggacgattt tgtcggtacc gccccagacg cagtacagat catggaagat
    14701 gccgccgctg ttgccgcagg cgccgtaaga gatacaaatt ttcgggtccg gcgccgactg
    14761 ccaggcgcgc agcgccggag agcgcatggc gcgggtcacc gcgccggtaa acagcagaat
    14821 atcggcatga cgcggcgacg gtactacttt gatgccgaaa cgctcggcat caaacagcgg
    14881 cgaaagcgtc gcaaagattt cgatttcaca gccgttacag ccgccgcagt ccacgcggta
    14941 aacgtatgcc gaacgcttaa tatttttcag tagagacgcc ttcatgctgg cgatggattc
    15001 atccaccgtc atcggtaccg gaatgccgtt ggcgtcacgc gggcctaata aattgctcat
    15061 tagctgacct ctttcatatg gcgagtcagt tcaatacggt cggacggcac caggcatttc
    15121 tgacgcttac agtccgggca ggtctcaaag ctttcgcggt ggttttctgc tcggctgtcg
    15181 ccgttgtgcg caagcagcgc aatggcgtag tcgatctctt tctgtaccgc gaaaggacga
    15241 ttgcacacgc ggcagttgca cagcgcgaag cgggactgtt gcaggaagtc ttctttcttc
    15301 cacactgcca gttcgtactc ttgcgacagt ttgatcgccg ccgtcgggca cacctcttcg
    15361 cagcgaccgc agaagatgca gcggccaaga ttgaactgcc acgccagctc attggtcgca
    15421 agatcggttt ccaccgtcag cgcgttcgac gggcaggcat taacgcaggc ggcgcagccg
    15481 atgcactgct gcggattatg ttccggcttg ccgcggaagt ttttatcaac cgcaatcggc
    15541 tccagcggat aagacgaggt cgccgtgccg gttttgataa cttttttgat aaaggtaaac
    15601 atggcgattc cttatttcag cggcgagttt ttacgctcaa tgctgtagcg ctcaagttct
    15661 ttgtacggca cgactttgct cttcttctta cgtacatcga ccacggtcat ccggtcggta
    15721 caggagtagc aaggatcgag gctaccgatg atcagcggcg cgtcggagac ggtgttgcca
    15781 cgcagcatat aacgcagggt cggccagttg gcgtaggttg ccgcacggca gcgccagcgg
    15841 taaagcttct ggttgtcgcc ggtcatgctc cagtggatat cgtcaccacg cggcgcttca
    15901 gcgaagccga gcgcaaaacg gtgcggaata taggtaaagc cttccaccat cagcgggccg
    15961 cccggtagat tatccagacc gaaatcgatc atattcagcg aggtgtagac ttcgttgata
    16021 cggactttca gacgagaaat cacgtcgcag ccctgctcgc tatgtacttc catcggcagc
    16081 agaccgtagc cgacaaacgg gtggtcggcg cgggtgtcgc gggcgtgacc gctggcgcgc
    16141 accatcgggc cgacattact gaagtcgcgg gcaatttccg ggtccagacg gccgataccc
    16201 acggtacgct gttccatatt cggcgtgctc agcagcatgt ccaccagctc ctgcacgtca
    16261 cgacgcatct gctgcgccag ttgacgggtc tggatcatgt cctctttgag cagatcgcgg
    16321 cgaatcccgc cgatcaggtt cagaccgtaa gttttgcgcg ccccggtcag tatttccgcc
    16381 atcttcatgg aggtttcacg cacgcggaag aactgcataa agccggagtc aaagccggta
    16441 aagtggcagg cgaggcctag gttcagcagg tgcgagtgca gacgctccac ttccagcaga
    16501 atggcgcgga tcatctgcgc acgctccggc acctgaatgc ccatcgcgtt ttccacggaa
    16561 gtggtgtagg cagtgctgtg cgcgaaaccg cagattccac acacgcgatc cgacaggaag
    16621 gtgacttcgt tataacccat gcgggtttcc gccagttttt ccataccacg gtggacgtag
    16681 aacaggcggt agtcggcatc gataatgttt tcgccatcga cgaacagacg gaagtggccc
    16741 ggttcatcgg aagtgacatg cagcgggcca atcggcacca cgttattttt cttgtcaccc
    16801 agctcgttaa tgaactcgta ggtttccgca tcggtggtcg gcgccgggcg ctgacgataa
    16861 tccatgctgt ctttacgcag cggatagagt tcatccggcc agtcgtccgg cagcaccaga
    16921 cggcgctcgt ccggcagacc gaccgggatt aaaccgtaca tgtcgcgtac ttcgcgctca
    16981 ccccacacgg cagccggcac gcgcggcgta acggatggga attccagctt attggcatcc
    17041 acttcaacac ggacggtaat ccagcacttg gtgccctgct ccatcgacag cacgtaataa
    17101 acggcatagt ggccgcacaa ctggcgttcg tcattaccga acagcaccga cagccaccca
    17161 ccctgctggt agtaaagaaa ctccaccact tccggcagat agttcacttt taccgtaata
    17221 gtcagctgat ctttggtctg ccaggcttcg tccatcacga cgcccggaaa cgcctggtgc
    17281 agcgccgcaa ggtattgttg acctaatttt tcttcaaaca tgctcaaact ctcttaaatc
    17341 acgccgccag caaggagacg aaggctaaaa acgcaaaccc aaaaccggcc caggtcacgc
    17401 gtgaagtggc gcaaaaacgc agtcgcgcca tgctgttttc aaacagggcg atcaccagta
    17461 cgccgacaat cagcttgacg acggcaatca ccagcgccag taacagtccg cctgcgctga
    17521 aggtttccat ctgtccccac ggcaaaaaca cgccgacgaa catttgcagc accaccagtt
    17581 gtttcaggct gatgccccat ttcagcaccg caaagccgct accgctgtat tcggtcaacg
    17641 gcccttcctg caactcctgc tccgcttccg ccaggtcgaa cggcagcttg cccatttcga
    17701 taaaggtggc aaaggcgcag gcgcacagcg ccagaatcag cggaatactg cgcgcgacag
    17761 gccagtgata aatggtatcg gcgatattgc tgatatgagt tgaacccgcc acctgcgcgg
    17821 ctacccacag acccagcagc agaatcggct ccaccagcac gccgagcatc gcttcacggc
    17881 tggcgccgat cgcagtgaac ggactgccgg tatccaggcc tgcaatagag aagaagaagc
    17941 gcgcaatcgc gaacagataa atcagggtga ttaaatcacc cagttgcggc aacggagatc
    18001 caacggtgac gaccggcagc gcggtggcga tagtcagcat cacgccgacc atcacaaacg
    18061 gcgtcaggcg aaaaacccag ccggaatcag cgggcgcaat actctgacga ccgagcagtt
    18121 tgataatgtc gcggtactcc tgcaacacgc ccggcccacg gcgattgtgt agacgggcgc
    18181 gcgccacgcg agtaataccg gacagcaatg gcgcaacggc aaatagcacc agcgcctgaa
    18241 ttaacggata aaacacactc attttcaggc tcctcgtgaa accacaatca ccaccagcac
    18301 cgccagctca atcagcgcca gacgacggaa cagccccgcg gccgccgcgt tctgccagcc
    18361 cggcaccagc gataccgggt tcagccattt acgcagtttg agtaccgggg caaaggcctc
    18421 tttcaccggc atggcgaaac cgtgcgcggt aatcaccatc gactgctcat ggtcgtagcc
    18481 gcacacccag gccgcgccgc gagaacgcga cggcagacgg ttgcctttga acatcgccat
    18541 aatgatgaat ggcagtagcg gacaggcgac caacagcagc gtgatcatcg gctgcgatac
    18601 ggtggtgtgc gcggtttcca gcggcaacgg taccgcagtg gaaatcatcg gcagcagcca
    18661 cggcgcggca accccgccca gtacgcagca aaccgccaat gccaccacgc tgacgcccat
    18721 caggatcggc gcgcagctgg cattttcagc ttccttcgtg cgcggcgcgc caaggaacgt
    18781 cacgccgtaa actttcgcca tacacatcac cgccagcgcg ccggtaatcg ccaggccaac
    18841 cgccagcagc ggtcctaaca gacgaccaac aaacgcgccg ctgttgccca gtttgaagaa
    18901 ggactggtaa atcacccact cgccggcaaa gccgttcagc ggcggcagcg ccgccatcgc
    18961 catcagaccg accagcatgg cgatagaaat aaccggcatc cgtttaccaa taccgcccag
    19021 tttttcgatg tcgcgatgac cggtacggaa ccagatgctg cccgcgccca gtaacagcac
    19081 gcttttgaac aggctatggt tcagcagatg atagagcccg ccggtcagac ccagcgcgat
    19141 cagtaccggc tgattgagag caatcccggt aacgcctgcg cccagaccga gcaaaatgat
    19201 gccgatattt tccagcgtgt gataggccag caggcgctga atgttatgct ccatcagcgc
    19261 gtacagaccg ccgacaaagg cggtgatcat cccaagcacc aacagcgcca cgccccacca
    19321 cagtggcgca ttgccgccaa gcagagatag cgagagaatg cccagcagcc cgattttcat
    19381 caccacggtc gagaacagcg cggcggcggg agcgctggcg ttggcgtgcg cctgcggcac
    19441 ccaaccgtgt agcgggataa tcccggccag cagaccaaaa ccgataacgc cgagcagcca
    19501 gatatcggag cccagcggca gttgctgagc gcgttgatcc agcagcccca gatccagcgt
    19561 gccgtagcgc tgccacacca gccagcaggc gattgccagc agcagcgtac cgagacggcc
    19621 cagcgcaaac cacagtttgc cctctttgct accgccggta aggaacacgg cgcagagcgc
    19681 catgatttca gccatcacca ccatcgtccc cagattactg gcgaccacag cgcagacggc
    19741 tgccgccatc agcaggttga tcaacagtcc gttggctttt acctgtggat ggcgatgcca
    19801 gtcgatattg aacaggctga cgaacagacc gcacagcccc agcgtaatca gccagatagc
    19861 attcagcggc gtaatttgca gcatgtgacc ggtaaacggc atcacgccgc taaccgtaac
    19921 ggcgctggtc agcgcggtga accccgcgcc tgccgtacac aggctgccga ccgcgccgcc
    19981 gataccggca atccagccgc tcagcgcttt atgaaacgaa aacagaaacg ccagaacggc
    20041 ggcggcggca aaccacgcga cgccgctagt aatcagtgaa agtgaactca ttatgcatcc
    20101 ccactctgag cctgctgaaa caaggtgaga tcgccaaaat cggtattaaa cgtcagctca
    20161 cgtttacgtt tgctggcgcg ggcgatatcc gtgttctcca ccaggtgtag cgctttagtc
    20221 gggcacatcc gcacacaggc cgggccttgc tcgtcaaagc tgcacaggtc gcatttcacc
    20281 gcgatagcgc gcacgcccgg cacccagtcg agcaacgtac tgacgcgcgc aggcgctggc
    20341 ggcgcgggcg gcgctttcgg cgtattggcg ttcgccggaa tatgcagcgg acggctgccg
    20401 gaaaactcaa tagcgccaaa cggacaggca ataccgcaca gtttgcagct cacgcacagg
    20461 ctttcattaa gctggacagc gccgtcaacg cgattaatcg cgttaaccgg gcataccgtg
    20521 gcgcatggcg catcttcaca gtggtgacag agctgcggcg cagattcttt ttcattcagc
    20581 atcactttca ggcgcggcat tgactgcagg ccatgctggc gatgcgtctc tgaacaggcg
    20641 gcctcacagg tgtggcagcc gatacagaga gtggagtcag caattacaaa acgattcacc
    20701 aggcattcct caggtgattg tcatttttga cgaaaacatg ccgttgaaat gtcattttcg
    20761 acacttatcg acacgcccat ccccaaaaca ttcatgacat ggcgcaacgc cacatcgcga
    20821 atcaaagcgg gcaacgcctc aggcttatac agccgggctg tgtcccttta ccaattggcg
    20881 caaattaacc ggcgagttgg tttctacagc ggtatagagg ctgtcgtaaa cgctggcgat
    20941 tttttccaga tagtgctcca gcacctgctc gcgatcgcgg ttgttaaccc gttcgtcaac
    21001 cttgccgtcg atatcgagct gcgcctgtgc aatcaattgc ttatcttcgc catctttggt
    21061 ttcaacgtag tactcaatgg tgtggctgtt aaaaccatcc gccaacgcaa cgtaaatacg
    21121 aaagtgctca aacaggacaa agcaaagatc cctttccggc gcgcagctca ttgcgtgatg
    21181 caggcgcgct ttcgagaggg tgatcccctg aaccagcgag ttgcagtaaa tatgccactg
    21241 gtcctgtagg cgacgatgcc gttgcgcgat gtaatcggcc ttttcgctta tttcccaaat
    21301 agtcatgtca ggttacccgt ttaacagaga tgcctgcgtt aagcattttc catgccaatt
    21361 tttaacttat tgtttttaat ggaagacgcg cacagttact gccgtttcga cgcggtgacg
    21421 acatgtcatt tcgtcatcgt cgacattaac ctgccagggg atacaaatat tggcataaat
    21481 attgctttac aggggcaacc actacgggag gcgatatgca cgaaatcacc ctctgccaac
    21541 gggcactgga attgattgaa caacaggctt cagcatacgg tgcaaaacgt gtgacagccg
    21601 tctggatcaa aattggcgca ttttcttgcg tggaaaccag cgctctttcc ttttgttttg
    21661 atctggtatg ccgcggcacg atagcagaag gttgtaaact gcacctcgaa gaacaggaag
    21721 ccgaatgctg gtgtgagcat tgtcaacaat atgtcacgtt gttaacccac cgtgtacgtc
    21781 gttgtccgca atgtcatagc gatacgctgc gaattgtggc cgatgacggc ttacaaattc
    21841 ggcgcataga gattgatgaa actgaagatt aatgccggat aagacgctcg cgtcgccatc
    21901 cggcagaaag cctgtaacaa gaagaagatc aggagtaagc gatgtgtacg acttgcggtt
    21961 gcgctgaagg caacctttat atagaaggcg atgaacataa tccgcactca gcgtttcgta
    22021 gcgcgccctt tgccccagcg gctcgcccgg cgctgaatat taccggcatt aaaacgcctg
    22081 actttacccc aagtcagacc gcagaaggcg atctgcatta cggccacggc gaagccggaa
    22141 cccacgcgcc tggtatgagt cagcggcgga tgctggaggt tgaaatcgac gtgctggaca
    22201 aaaataatcg tctggctgag cgcaaccgcg cccgtttcgc cgcccgccag caactggtgc
    22261 tcaacctggt gtccagcccc gggtccggta aaaccactct gctgaccgaa acgctgatga
    22321 aattgaaaga ccgtgtaccg tgcgcggtga ttgaaggcga ccagcagaca gtgaacgacg
    22381 ccgcccgcat ccgcgctacc ggcacgcccg ccattcaggt caacaccggt aaaggctgcc
    22441 atcttgacgc gcaaatgatc gccgacgccg cgccgcgcct gccgctggat gaccacggta
    22501 ttctgtttat cgaaaacgtc ggaaatcttg tctgcccggc cagcttcgat ctgggcgaaa
    22561 agcataaagt cgcagtgctt tccgtgaccg aaggtgaaga taagccgctg aagtatcccc
    22621 atatgtttgc cgcggcgtcg ctcatgctgc tcaataaagt cgatctgctg ccctacctca
    22681 attttgacgt tgagaagtgc atcgccagcg cgcgtgaagt gaacccggag attgaaatta
    22741 tcctgatttc cgccaccagc ggcgaaggca tggatcagtg gctggcctgg ctggaggcgc
    22801 agcgatgtgc ataggcgttc cgggtcaaat ccgcgccatt gacggcaatc aggcaaaagt
    22861 tgacgtctgc ggcattcagc gcgacgtcga tctcacatta gtcggcagtt gtgatgaaaa
    22921 cggtcagccg cgtctgggtc agtgggtgct ggttcatgtc ggattcgcca tgagcgtcat
    22981 taacgaagcg gaagcgcgcg acacgctcga cgcgctacaa aatatgtttg atgttgagcc
    23041 ggacgtcggc gcactgctgt atggtgagga gagataatgc gttttgttga cgagtaccgt
    23101 gcgccggaac aggtaatgca gctcattgaa cacctgcgtg aacgcgccgc ccttcttcct
    23161 tacactgctg aacgaccgct gcgcattatg gaagtctgcg ggggtcatac ccacgcgatt
    23221 tttaaatttg gtctcgatca gttactgccc gaaaacgtgg agtttattca cggccccggt
    23281 tgtccggtct gcgtgctgcc aatgggacgc atcgacagtt gcgtggaaat cgccagccat
    23341 ccggaggtga ttttctgcac ctttggcgat gccatgcgcg tgccggggaa acagggttct
    23401 ctgttgcagg ctaaagcgcg cggcgcggat gtgcgtattg tttattctcc gatggacgcg
    23461 ctgaagctgg cgcaggataa cccgacccgc aaagtggtat ttttcgggct gggctttgaa
    23521 accaccatgc cgaccaccgc catcacgcta cagcaggcaa aacagcgtga cgtgcgaaac
    23581 ttctactttt tctgccagca cattacactg atcccgacgc tgcgtagcct actggagcag
    23641 ccggacaacg gcattgacgc ctttcttgcg ccaggccacg tcagcatggt catcggcacc
    23701 gaggcgtacc agtttatcgc cgccgatttt catcgcccgc tggtggtggc tggattcgaa
    23761 ccgcttgatc tactgcaagg cgtggtcatg ctggttgagc agaaaatagc ggccctaagc
    23821 caggttgaaa accaataccg tcgcgtggtg ccggatgccg gaaacatgct ggcgcagcag
    23881 gccatcgccg atgtgttctg cgttaatggc gacagcgagt ggcgcggcct gggcgtgatt
    23941 gaatcctccg gcgtccacct gacgccggag tatcagcgct ttgacgccga agcgcatttc
    24001 cgcccagcgc cacagcaggt ctatgacgat ccgcgcgccc gctgcggcga agtgctgacc
    24061 ggcagatgca agccgcatca gtgcccgcta tttggtaaaa catgtaatcc agagaccgcg
    24121 ttcggcgcgc tgatggtctc ttccgaaggc gcatgcgccg cctggtatca gtatcgtcag
    24181 caggagtgtg aagtttgaac aatatacaac tcgcccacgg cagcggcggc caggctatgc
    24241 aacagttgat taatagcctg tttatggagg cctttgccaa cccgtggctg gcggaacaag
    24301 aagatcaggc gcgtctggag ctggcgcaac tgacggcgga gggcgaccgt ctggcgtttt
    24361 ctaccgatag ctatgtgatc gatccgctct ttttccccgg cggcaatatc ggcaaactgg
    24421 cgatttgcgg tacggcgaac gacgttgcgg tgagcggcgc gatcccccgc tatctctcct
    24481 gcggctttat ccttgaagaa gggctgccga tggagacgtt aaaaagcgtg gtcaatagca
    24541 tggcggcgac cgcacgggaa gcgggtatcg ccattgtaac cggcgacacc aaagttgtgc
    24601 agcgcggcgc ggcggataaa ttgtttatca acactgccgg catgggggcg attcccgccg
    24661 atattcactg gggcgcgcaa acgctgagcg ttggcgatgt gctgttagtc agcggtacgc
    24721 ttggcgatca cggcgccact atcctcaacc tgcgtgagca actgggactg gatggcgagc
    24781 tggcgagcga ctgcgcagta ttaacgccgc ttattcagac gttgcgtcat attgacggag
    24841 tgaaggcatt gcgtgacgcc acgcgcggcg gcgtgaatgc ggtcgcccat gagtttgcgg
    24901 cgtcctgcgg ttacggtatt gaattgtccg aatccgcact gccgctcaaa cctgccgtgc
    24961 gcggcgtctg cgagctgttg gggctggatg ccctgaactt tgccaacgaa ggaaaactgg
    25021 tgattgccgt tgaacggcag gccgcagatc gggcgttggc ggcattacgc gcgcatccgc
    25081 tgggacgtga tgcggcgctg attggcgaag tcgtggaacg caaaggcgtt cgcttagccg
    25141 gactctatgg cgtgaagcga acccttgatt tgccacacgc cgaaccatta cctcgtatat
    25201 gctagcagcc tgttggcagc atactgtagg ccggataaga cgcatttgcg gcgagatccg
    25261 gcattaacgc tgcattaacg cctgatggcg ctttgcttat caggcctacg gagtgtgtga
    25321 ccagcgagtt tgcggtcagc catccggcaa taacttacga cttataccta taattcattt
    25381 accgttttcg caccgttttg cggtattttc ctggaaaagc aacatgtcgt atacacccat
    25441 gagcgatctt ggacagcaag gcttgttcga tatcactcgt accttattgc agcagcccga
    25501 tttggcgtcg ctcagtgaag cgctttcgca actggtaaag cgttcagcgc tcgccgacag
    25561 cgccggcatt gtgctatggc aggcgcagtc gcaacgcgca caatattatg cgacgcgaga
    25621 aaatggccgt cctgttgaat atgaagatga aaccgtactg gcgcacggcc cggtacgtcg
    25681 catcctttct cgccccgatg cattgcactg taatttccat gagtttaccg aaacctggcc
    25741 gcagcttgcc gcgagcggcc tctaccctga atttggtcat tactgtctgc ttcctttagc
    25801 cgcggagggc cgtattttcg gcggctgcga attcatccgt caggaagatc gcccctggag
    25861 tgaaaaggaa tatgaccgtc tgcatacgtt tacccaaatt gtcggcgtgg tcgccgagca
    25921 aattcaaaac cgggtaaaca ataatgtcga ttatgatctg ttgtgccgcg aacgcgataa
    25981 cttccgtatt ctggttgcga ttaccaacgc cgtcctgtcg cgtctggata ttaatgagct
    26041 ggtaagcgaa gtcgcaaaag agatccacca ctatttcaat atcgacgcga tcagcatcgt
    26101 gttgcgcagc catcgcaaaa ataagctgaa tatctactcc actcactacc ttgatgagca
    26161 tcatccggcg cacgaacaga gcgaagtcga cgaagccggc acgctcacgg agcgcgtctt
    26221 taaaagtaaa gagatgctgc ttatcaacct caacgaacgc gatccgcttg ccccctacga
    26281 acgaatgctg ttcgatacct ggggcaatca gatccagacg ctttgcctgc tgccgttgat
    26341 gtccggcaag acgatgcttg gcgtgctcaa actggcccag tgcgaagaaa aagtgtttac
    26401 caccgccaac ctcaagctgc tacgtcagat tgccgaacgg gtagccattg ccgtggataa
    26461 tgcgctggcc tatcaggaaa tccaccgtct gaaggaacgc ctggtcgacg aaaatctggc
    26521 gctcacggag cagcttaata acgtcgacag cgagtttggc gagatcatcg ggcgcagcga
    26581 agcgatgtac aacgtgctaa agcaggttga gatggtggcg cagagcgaca gtaccgtgct
    26641 gattctgggc gaaacgggaa ccagtaaaga gttgattgcc cgcgccattc acaacctgag
    26701 cggacgtagc gggcgcagaa tggtaaagat gaactgcgcc gcgatgccgg cggggctgct
    26761 ggaaagcgat ctgtttggtc atgagcgcgg cgcgtttacc ggcgccagcg cgcagcggat
    26821 tggccgtttc gagctggcgg ataaaagctc gctgtttctg gatgaagtgg gcgacatgcc
    26881 gctggagcta cagcctaagc tgctgcgcgt ccttcaggag caagagtttg aacgtctcgg
    26941 cagcaataaa ctgatccaga ccgacgtgcg gctgatcgcc gcgactaacc gcgatctgaa
    27001 aaaaatggtc gccgatcgcg aattccataa cgatctctac tatcggctga atgtttttcc
    27061 gattcagctt cctccgttac gcgaacgtcc ggaagatatt ccactgctgg tcaaagcgtt
    27121 taccttcaaa atcgcccgcc gaatggggcg taatatcgac agcattcccg ccgaaacgct
    27181 gcgcacgctc agcggtatgg aatggccggg gaacgttcgc gaactggaga atgtcgtcga
    27241 gcgcgccgtg ctgctgacgc gcggcaatgt gctacaactg tcgctgccgg atatgactgc
    27301 cgtaacgccc gatacctcgc ctgttgcgac tgaaagcgcc aaagaaggcg aagatgaata
    27361 tcagcttatt atacgcgtgc tgaaagagac caatggcgta gtggctggac caaaaggcgc
    27421 ggcgcagcgt ctggggctta aacgaacccc cctgctgtcg cgtatgaagc gattgggtat
    27481 tgataaagac gcgttagcgt aacgggttgc cggatctgat ccggcctgga gatgatgcgc
    27541 gccgtaggcc tggcgcttcc ccttcacttc ttgcgctgat atttttccgg caattctgga
    27601 acggggcgct tatcgtcgat aaggtgccgc acggtcagga caggatgccg ccaaagcatt
    27661 cgcggacctg cccaacgcat aatctgcttc atctcctcgc gtttagccgg ctgatagcag
    27721 tgcaccgggc actgcttaca ggcgggtttt tcctcgccaa atacgcattt atcaagacgt
    27781 ttttgcgcgt aggcgaacag cgcgtcgtaa tgcccctgca ccgctgacgc ctgtggacac
    27841 tggctttcat acagcgcgat catttttttg atcgtcagtt tttcacgagc gatacgttta
    27901 ccaggcatcg tgctctctcc gaacattaag atgcatttat tttacacctt atccctcttt
    27961 agcactatca ctgcatatcg tcgccattac gcaaataaga attattttca tttattcatg
    28021 ccttgtgcta tataacatag caaaggctat attcgatgat taattaacca cattgttgcg
    28081 agggatacta tgacgaatct acatcgtcta aaaacactcc tgattgccgg tattgtcgcg
    28141 atactcgcgc tatcgccagc ctatgcaaaa gagaaattta aagtcatcac cacgtttacc
    28201 gttattgccg acatggcgaa aaacgtggcg ggcgacgcag cggaagtcag ctcgattacc
    28261 aagcccggcg ctgaaatcca tgagtatcag ccaacgcccg gcgatattaa acgagcgcag
    28321 ggggcacagc ttatcctcgc gaatggtctg aacctggagc gatggttcgc ccgcttttat
    28381 cagcaccttt ccggtgtacc ggaagtcgtc gtctccaccg gcgtcaaacc gatgggcatt
    28441 accgaaggcc cgtataacgg taaaccgaac ccgcacgcct ggatgtcggc agaaaacgcg
    28501 ctgatttatg tcgataacat tcgcgacgcc ctggtgaagt acgatccgga taatgcgcag
    28561 atctataagc aaaatgccga acgctataaa gcgaaaattc gccagatggc cgatccgttg
    28621 cgtgccgagc tggaaaaaat tcccgccgat cagcgctggc tggtcaccag tgaaggcgcg
    28681 ttctcttacc tggcgcgcga taacgacatg aaagagcttt atctctggcc aattaacgcc
    28741 gatcaacagg ggacgccaaa acaggtgcgt aaagtgattg ataccattaa aaagcaccat
    28801 attcccgcca tctttagcga gagtacggtt tccgataaac ccgcccgcca ggtcgcgcgt
    28861 gaatccggcg cgcattatgg cggcgtactg tatgtcgatt ctctgagcgc cgctgacggc
    28921 cctgtgccaa cctatctgga tctgctgcgc gtcacgaccg aaaccatcgt caacggcatt
    28981 aacgacggac tgaggagtca acaatgagtc aatctgcgat taccgttgat caagtcacgg
    29041 tgacgtatcg caacggtcat accgccctac gggacgctac ttttcaggtg cctggcggtt
    29101 caatcgccgc gctggtaggc gtaaatggtt ccggtaagtc tacgttattt aaagcgttaa
    29161 tgggctttgt gcatcttgcg cggggcgata tcactatcct gcaacagtca gtcaaccagg
    29221 cgctgaaaaa aaacctcatt gcttatgttc cacaatcgga agaagtggac tggtcatttc
    29281 cggtactggt agaagatgtg gtgatgatgg gacgctacgg tcatatgggc tggctacgcc
    29341 gtcccacagc gcatgatcac gcctgtgttg acgccgcgct ggcgcgggtg gatatgcagg
    29401 aatatcgtca caggcagatt ggcgagctgt ccggcgggca gaaaaaacgt gtgtttcttg
    29461 ccagggccat cgctcaggat ggacaggtaa tcctgctgga tgaacctttt accggcgtgg
    29521 atgtaaaaac cgaagcgcga atcatcgatc tactgcggga actgcgcgat gaaggccgca
    29581 cgatgctggt ctcaacgcat aatctcggct ccgtcaccga attttgcgac tatacggtaa
    29641 tgattaaagg aaccgtactg gccagcggcc ctaccgaaac cacgtttacc gccgcgaatc
    29701 tggaactggc gtttagcggc gttctacgtc atatcgcgct aagcggaggt gaagagcaca
    29761 tcatcaccga tgacgagcgc ccctttattt cccgacgcgt ggccagcgga ggaaaatcgt
    29821 catgaactgg cttgttgagc cgtttggcta ccagtatatg ctcaacgcga tgtgggtctc
    29881 cgcgatggtg ggcggtcttt gcgcgtttct ctcctgctat ttgatgctca aaggctggtc
    29941 gctcattggc gatgcgctat ctcactctat tgtgcctggc gtcgctggcg cctggatgtt
    30001 agggctgccc ttctcgctcg gcgcgtttct ttccggcgga ctggcggcag gcagtatgct
    30061 ctttcttaac caacgctcac gcctgaaaga agacgcgatt atcgggctta tcttctcctc
    30121 tttttttggc gtcggccttt ttatggtgtc gctcaatccg atgtcggtga atatccagac
    30181 gattattctc ggcaacgtgc tggcgatcgc gccagcggat attacgcaac tggcgattat
    30241 cggcgcagtc tcgctgacga ttctgctgtt aaagtggaaa gatctgatgg tcgtcttttt
    30301 cgatgagacc catgcgcgtt ctatcgggct taatccgggt cgactaaaat tgttgttttt
    30361 cactctattg tccgtctcta ccgtggcggc cctgcaaacc gttggggcgt tcctggtgat
    30421 ctgtctcgtc gtcacgccgg gcgcgacggc ctggttactc accgaccgtt ttccacgtct
    30481 gctcatgatt gccgtcgtga ttggcagcct gaccagtttt ctgggcgcat ggcttagcta
    30541 ctggctggat ggcgccactg gcggaattat tgtcgtcatg caaaccttac tgttcatcac
    30601 ggcctttatt ttcgccccga aacacggtct gttagccaac cgtcgacgcg cccgcctgca
    30661 gaaggagccg acatgttctt agcaacgttc ctggaaccct ttcagtttga ttttatggtg
    30721 aacgccctta tggtttcggt cattgtggcg attccctgcg ccttgctgtc cgtgttttta
    30781 gtgttaaaag gctgggcgtt aatgggcgac gcaatgagtc atgcggtatt ccccggggtc
    30841 gtgctggcat atattgtggg gattcccctg gcgattggcg ctttcattgc cggattattt
    30901 tgcgctatcg ccaccggtta tctggacgat aacagccgca tcaaacgtga tacggtgatg
    30961 ggcatcgtct tttccgggat gtttggcgca ggtctggtgc tctatgtttc tattcaatcg
    31021 gaagtgcatc tggatcacat cctgtttggg gatatgctgg gcgtatcgct gggggatatc
    31081 gtacaaacgt cggttattgc actgggtatt gcgttaatca tagggctgaa atggaaagat
    31141 ctcctgctac acgcttttga cccgcaccag gcgaaagcca gcgggctgaa tacgacgcta
    31201 ctgcattatg gcctgctatg tatgattgcg ctgactatcg tcgccacgct gaaatcggtg
    31261 ggcattattc tgtcgatttc attgcttatc gcccccggcg caattgccat tttgctgacg
    31321 cgacgctttg cgcgcgcgct gggattagcg gtgagtctgt cagttattac cgcttttgcg
    31381 ggcgtctatc tgtcttttta tcttgatagc gcgccagcgc cgaccatcgt ggtattattt
    31441 gccatcgtgt ttattgcggt atttatttac gcaacatggc gcgacaggcg taatgaaatc
    31501 gtaccagagg cgcaaggtta acagcagcgt tcagaaaata aatacgacag ttgtagtaga
    31561 aagccaccct atatctgttg ttggtcagta tggtaagcag ctatctttaa atttctttac
    31621 aacaagcgta aagataagct gctttactcc ccatgttttt cctgtttcga aattttttca
    31681 gagtttggct aacccagcat aatgtgatta ttactcacaa gatctgtaat atcccagcaa
    31741 aaaataaatt tataactaca cgtaatacaa gagagtgatt gtcacataaa aaatagttta
    31801 attcattcct actgcaatcg gtaacgcgca attatcgtca ggtacagcag ggttatgtgc
    31861 aaaagcagtg cgctgtaaat gcgcgtctag tttcagtccc cgaaacagag atagcggtga
    31921 agagtccatc cccaaacgat acataacctt cttacgataa atactgacgg tttttgttcc
    31981 cagaccaaat tttttcgcca gttcaattgc cggatgtccg gaggataata atatcagcag
    32041 cgcatatttc gcctgcgtga caccgggagg tagattccac caggcgtatt gattgatatt
    32101 aaacaatacc tcttccggcg tctcgccggc attaaaagca tacgtagcag ccacggtttt
    32161 cttttgtggc ctgtggcaga aacgcagcca ggcttccgga agacggagct tctctcgctc
    32221 cgagcggata gcgcaggata gttcgtcttt taaaacataa tccataacgc caaaatattg
    32281 cagcacacag cgatcgatat aatacaagcg atctgccact accaaaactt tacggttctg
    32341 caaccgcgcc tgcaacgcat gaaaaagata aacatgctca tgcgggttca aagctaaaat
    32401 cagcccggcg tccggcatat cggatagaga atgcaaaagt gcggttaatg agttacacgt
    32461 tttaacgcac ttttccggat atttttgctt aaaaatagac tgtagggcat
//
LOCUS       DAJVSD010000020        31690 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.020, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000020 DAJVSD010000000
VERSION     DAJVSD010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 31690)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31690)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31690
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.020"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..485)
                     /locus_tag="OQP62_000792"
     CDS             complement(<1..485)
                     /locus_tag="OQP62_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000002042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1720419.1"
                     /translation="MANLPETPQWESGIYQIEVSDPVLGGPDGISNRQAKQLASRTSY
                     LKQKVEKSGTDLAAHIAAVDPHTQYATKASPTFTGTPTAPTPANGDNSKKLATTEFVA
                     KALAALAGSAPETLDTLKELADALGNDPNFATTVLNKLAEKLAKDQNGADIPEPALFV
                     K"
     gene            complement(488..1066)
                     /locus_tag="OQP62_000793"
     CDS             complement(488..1066)
                     /locus_tag="OQP62_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000852583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HCS1720420.1"
                     /translation="MAEVLQLPPPLEGDISLRTLGRLAGRLDNIDLSVLMVGLVDIVD
                     SSALPWLGEQFSLFGDGWELAESDDVRRMLIKSAIELHRYKGTPWSIREIIRRFGFGE
                     VDLIEGTGQIGYDGRHTYNGLFVHGDAQAWAVYRVILQQPITNDQAALLRQTLAAFAP
                     ARCHLASLEYQSVAIRYNSTTRYDGSYNHGSS"
     gene            complement(1059..2162)
                     /locus_tag="OQP62_000794"
     CDS             complement(1059..2162)
                     /locus_tag="OQP62_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016191672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HCS1720421.1"
                     /translation="MALTEPDFIERDADKITAEMIAKYEADTGKTLYPAQAERLLIDL
                     WAYREMLVRVAVQEAAKQNLVAFSREPMIDYLGELVDVYRLAAQPATTTLQFSVDEAL
                     AIDVLIPAGTRVSASDSIIFATDTDVVLKAGLLLVNVTATCTEPGTAGNGWQPAQVSQ
                     LLDEIDNIDLLVTNLTASSGGSEQEDDDRLRERIRLAPESFTNAGSRGAYRFHAMGAH
                     PGIVDVAVLSPAPGTVELYPLLSTGLPDSSILTLVESFCSDEKVRPLTDTVRAKTPVQ
                     VDYTIEARITIYRDQDARLVKDNANSAIQNWVASRTATLGRDIVPSQIISVLSVSGVY
                     QVELVTPALRVVAENEWANCTAITLNMTGVSDG"
     gene            complement(2153..2500)
                     /locus_tag="OQP62_000795"
     CDS             complement(2153..2500)
                     /locus_tag="OQP62_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000859115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HCS1720422.1"
                     /translation="MKTTSVFWQPALQAPGEIVRGLDDIRQSIQIILRTPRGSDPHRP
                     EFGSNLHLYIDWPVGRAIPHVVRESVDAIRRWEPRCQLMSVKPAVDGEHLTLRVSWKG
                     SDGQPRTQELLWR"
     gene            complement(2557..3084)
                     /locus_tag="OQP62_000796"
     CDS             complement(2557..3084)
                     /locus_tag="OQP62_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HCS1720423.1"
                     /translation="MTGVTRQIGTVSAVDADRVQARVRLPECDNLRTNWLNVLQRNTQ
                     DNKDYWLPDVGEQVEVLLDANGEDGVILGAVYSDVDKPPFSDKNVRGTKYADGAEFSY
                     NRATHTLTVRGGIERIVVEVAADISLKGKNLDLTGVTTINGPATLNGDLEINGSAHAT
                     GNIFADGQNSNHHSH"
     gene            complement(3081..4235)
                     /locus_tag="OQP62_000797"
     CDS             complement(3081..4235)
                     /locus_tag="OQP62_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001545521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HCS1720424.1"
                     /translation="MAEINSTAQATSALTSVSDVLTPVFTLWYLQKNITSDIAPYVTR
                     VVWSDNIKNESDTIEVELDDTDGRWLDKWYPGKGDTLTLKMGYQGEKLLSCGTFSIDE
                     IEVSSPASVVAIRGVATSVNSALRTKSSRGFENTTLAAVAGRIARKHRLKLVGSIESI
                     KIDRVTQYAETDVGFLRRLASEYGYAVKVVSDQLIFSHLATLRSQEPVRQLKPQGVAR
                     FSLRDTINRVYKSAKVKHQKSSSKKLIVYEADGGTRESDKKLKGGKVTSADSLKVNSR
                     VSDPDSARIKADSALARHNEYQQNGSLTLTGTPQLTAGNKIELVGFGQLSGPWLIITA
                     RHAFERNSGYTTELEVARGPVTRGKKQKTQKLTVYHPDGSTSTVIKEKKK"
     gene            complement(4223..4435)
                     /locus_tag="OQP62_000798"
     CDS             complement(4223..4435)
                     /locus_tag="OQP62_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000478222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HCS1720425.1"
                     /translation="MFLEHITRDGERWDSLAWQYYGDPLGYPRIIAANPHVAITPVLP
                     SGLLLLIPVIEAEDARTEEDIAPWLR"
     gene            complement(4435..5319)
                     /locus_tag="OQP62_000799"
     CDS             complement(4435..5319)
                     /locus_tag="OQP62_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001423226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1720426.1"
                     /translation="MFAVLGDIEFELITYWDGFEATFGVDYAEHARIEGKPGLQFVGD
                     RLDEIQISLVFHQHYCVPDVELARVRTAMKAHQALALVFGNGDYRGWFVITDVTATSE
                     QTDSTGNVLAVSATVSLREYTGDPKNPLQPPAIRRQVPGAGAVSGAVPSPSGVAQFVR
                     NGVNYAKQAQSVLQTTISAVRVAQKMKGNPVVALTRVPGLMSGLGNISGALGKSVPAF
                     NALSESMPDAISLARTASEAATYVQQAQSALSGVDKRNIAGALDTVSGQLNAAGTAFN
                     RMSPGLSAMAARILTRSV"
     gene            complement(5319..7784)
                     /locus_tag="OQP62_000800"
     CDS             complement(5319..7784)
                     /locus_tag="OQP62_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001716231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1720427.1"
                     /translation="MASEFSVGVIIGGIVGSSFRSAVSGTRRALDSLGDTSRRLQERQ
                     NALTRATERYGQLGSSRMQHLNSELLRVSRTMEQIERQQRRLSAVSATGDALKANRLA
                     LYGQGAETYAIGRTLGAPVMASVKQYASFESQLRDISVTGDLDAKQERAIGQAIRQAS
                     LKVNQLQESLLGGVGQLVADGMAPERAATFAEMLGKTATATKADMTDLAKMTYAFSDA
                     LRITDAKELEQAFGIAATGAKLGSFELKDMAKALPGMAKAFAARGIYGKDAITQIVAS
                     LEVGKGSGSAEEAVTNMSNWLAAMGRGDTIQKYAKAGVDYQGSMQNYVAQGFSQYEAS
                     LMIANRFIDSKGKAFLQQWKAAGARGDQEGQQKLMESFGLAEVFTDIQTVNHLLSMRQ
                     GWDKYLSSKQEMNAPAAISTLDKDAAKQNDTLEGRWRRMQIGFNDSAISIGQSLRPAL
                     LQLGETFIPLMDSVGKWIAANPQLVSSTIKVVGALLAFRMATIGLKLGLNLLLSPFVS
                     VWKNAVLLRANWLRLTLALGEGGKLRWLVTGFGAVARGARTLGGVLSGGLVRGIMSAG
                     RAVLWIGRALLMNPIGLVITAVAAAAYLIYRNWGAVSSWFKQRWADIQEAFNGGIVGI
                     GKLLVNWSPAGLLYKAFAAALKYLGVDLPAKFTDFGGHLIDGLINGIRNKWASLKTSV
                     TGMGDSISDWFSEKLGIHSPSRVFMGFGDNIAQGAAIGLQRTTPLAALAGQRLAAEMT
                     PDVPRIPSPEIMAAGYSGRGATATGGGASGGIKVSFNPQFFLNGKETAAPAGLTGALN
                     MSLHELEKMLERLLAQKQRKEYS"
     gene            complement(7878..8015)
                     /locus_tag="OQP62_000801"
     CDS             complement(7878..8015)
                     /locus_tag="OQP62_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HCS1720428.1"
                     /translation="MQAQGLLARWFRFQPGEIDALDTDDLEMWLEQAEEQIKSEFGDN
                     Q"
     gene            complement(7960..8295)
                     /locus_tag="OQP62_000802"
     CDS             complement(7960..8295)
                     /locus_tag="OQP62_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000084214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HCS1720429.1"
                     /translation="MSQTQSDTFTLSYPFTTAAGTRIEQIELKRLTVKDLKQVRKINK
                     DPADWDEPLIARSTGILPEDLDNMDLADYMELQKRFQKITGLGKSDKNTDAGAGPAGE
                     MVQVSTGGD"
     gene            complement(8393..8674)
                     /locus_tag="OQP62_000803"
     CDS             complement(8393..8674)
                     /locus_tag="OQP62_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000110114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720430.1"
                     /translation="MSVELTDKGGRCASLGMSNGTWFTLLDIPGVETLFNTRKTNDPI
                     DCTRSKARKLADLIEAWKPPDQWFSGTGKSEGKALLIAFLRNCKGFRTC"
     gene            complement(8677..9201)
                     /locus_tag="OQP62_000804"
     CDS             complement(8677..9201)
                     /locus_tag="OQP62_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HCS1720431.1"
                     /translation="MMSKIEINRITNANIYLDGTNLLGRAEEVKLPDVSMIMQEHKAL
                     GMVGKVELPAGFDKLEGEIKWNSFYRDAMLSAANPYKSLALQCRSSVQRYSSQGLIDE
                     IPLVTFLTIMFKKNPLGTFKQHENAEFSSSFTCTYIRQVLDGEELLQLDYLANIFRVG
                     GVDQLTDYRINIGG"
     gene            complement(9198..10625)
                     /locus_tag="OQP62_000805"
     CDS             complement(9198..10625)
                     /locus_tag="OQP62_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001610519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath subtilisin-like
                     domain-containing protein"
                     /protein_id="HCS1720432.1"
                     /translation="MAANYLHGVETIEVENGARPVKTVKSAVIGLIGTAPMGDVNTLV
                     QCLSEKDAAAFGSQFTGFTIPQALDAIYDHGAGTVLVINVLDPSVHKIAVVSENVSFD
                     KATGRARLANPVVAQLVLKPDSNGQPYVEGQDYSLDAQTGVITNLGKSIAADATVKAS
                     YNYADPTKVTPADIIGTVNAAGNRTGMKLLNDSFNLFGYFAKILIAPVFCTQNSVSVE
                     LIAMAEKLGAVTYIDAPVGTTFAQALAGRGPEGTINFNTSSDRVRLCYPHVKVYDPVT
                     NTERLEPLSQRAAGLRAKVDLDKGYWWSSSNQEILGITGVERQLSAMIDDPQSEVNLL
                     NEQGITTVFSSYGSGLHLWGNRTAAWPTVTHMRNFENVRRTGDVINESIRYFSQQYID
                     MPITQALIDALTESVNAYGRKMTGDGAVLGFRCWFDPARNPETELAAGHLLLSYKYTP
                     PPPLERLTFETEITSEYLLTLKGGN"
     gene            complement(10615..10866)
                     /locus_tag="OQP62_000806"
     CDS             complement(10615..10866)
                     /locus_tag="OQP62_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001513985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720433.1"
                     /translation="MKEYRYSGPASGVTLSDGTEILLWPGKTVSLPEEHDYVKVLVAL
                     KHLTPVPEDTKPAVTPAVQSPKRRSSSDSEVKTEDSHGS"
     gene            complement(10866..11330)
                     /locus_tag="OQP62_000807"
     CDS             complement(10866..11330)
                     /locus_tag="OQP62_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016191683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gp37 family protein"
                     /protein_id="HCS1720434.1"
                     /translation="MNVLPVLDAVLARLREKLPQLQVEYFPEKPAEYRLNHPVGALLL
                     SYAGSRFDRPDDTGAVIQSQTIQLCVTVVFRQLNGKKGAINVLDAVRRILGGHTPPGC
                     RRRIWLTREVFIGEVRGLWQYALDFATESVFIEDSDLPSGPLLTEVNYEESE"
     gene            complement(11330..11776)
                     /locus_tag="OQP62_000808"
     CDS             complement(11330..11776)
                     /locus_tag="OQP62_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000271671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 domain-containing protein"
                     /protein_id="HCS1720435.1"
                     /translation="MYCTLEDLLAQVPERTLIELTSEEMDFDSPATVNTRVVDSCIRY
                     ADELIDAHLRGRYILPLAEIPTVLRDIAITLVRYRLYARRPEGDLPDTVKDDHKEALR
                     QLRELRDNRLTLGLPSTQKDVPEPGEFRVRSRPATFGGRDGLLEKY"
     gene            complement(11778..12116)
                     /locus_tag="OQP62_000809"
     CDS             complement(11778..12116)
                     /locus_tag="OQP62_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016191685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2190 family protein"
                     /protein_id="HCS1720436.1"
                     /translation="MGTTQQVILITTVTAGAALAQQRFVGADNTPCKAGAAALGVAEV
                     DAVTGDSTPVSVLGIIAVEAGAAVSRGVAVQSDAQARAVPQSGDGKSCGIALDEAGGE
                     GDVIRILRGV"
     gene            complement(12126..13079)
                     /locus_tag="OQP62_000810"
     CDS             complement(12126..13079)
                     /locus_tag="OQP62_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015365646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720437.1"
                     /translation="MSDYLKGKRVVDPVLTSIARGYKNAAFIGERIFPVVLTDKEGVR
                     VPTFGKTAFVEYDTERAVGADSNVLVREKTGTLDLVLGEHDLAAPVDYREQAESMFNE
                     ESKAIRRATNGVNLRRELIAARLAQDEKVYRTGHVKKLTAGDRWAGGKGDPIGVIEAG
                     MEAVRTATGLRPNLMTMGAGVMALLKFHPAIQAAIGANERKRITTEILQDLFQIEEIV
                     IGAPVSLPSMKAAMDKDSVPTDIWGDNLMLHYVGKPQPGADSADENEPSFGYTLRRKG
                     MPVADKYDGAGGKVKYCRYTDIYKVAVVGGDAGYLITGISK"
     gene            complement(13094..14209)
                     /locus_tag="OQP62_000811"
     CDS             complement(13094..14209)
                     /locus_tag="OQP62_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001273074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HCS1720438.1"
                     /translation="MSAIHIFKAGTHTDMHGKKLPFTPDDLAACVKAYDPSVHEAPLV
                     IGHPRTEDPAWGWVKALSLSGVDLMAEPAQLDPQFAEMVTDGRFKKVSASFYLPDSPS
                     NPKPGVLYLRHVGFLGAQPPSVKGLKQVSFSEQEEGVVEFADWQAITNASLWGKLRDF
                     LIARFSLDEAEKVLPEWQLNSLREEAYRDTLSQDAAGAQFSETGPGPSSASNEESSMT
                     KEEIEALQEENRRLKQQAADRDARDAQVRQEQLHKDNVAFAEKLVAEGRLAPRASSVV
                     VALLDAVAGGDKPVEFAEGESRTPLATAFRSLLSDGEPVMNFAEQATKDRVGDAVKVD
                     VAEFAEADPERLALHQKAVALSKKEGISYEAAVARCL"
     gene            complement(14424..14882)
                     /locus_tag="OQP62_000812"
     CDS             complement(14424..14882)
                     /locus_tag="OQP62_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000135514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HCS1720439.1"
                     /translation="MASDNLVSITINDKSLRRSLRALDLAATDMEPAMRKIAGTLLAE
                     TQFNFLDEGRPGWMPSLAAEERDGQTLQDTGRLMGSVSTDHDDRQAVVGTNVVYGAIH
                     QFGGKTGRNESVELPARPFLPVTGDGELQPEVVIPILDTIVRHLESAARR"
     gene            complement(14885..15706)
                     /locus_tag="OQP62_000813"
     CDS             complement(14885..15706)
                     /locus_tag="OQP62_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016191689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HCS1720440.1"
                     /translation="MSVTTAELAYCMTLPPKRAVSYLKSKGYQITWDWEEMWQEAHAR
                     AFTVAKVTRLDILEDIRGALQQAVDEGKTDRWFRQELEPVLKRKGWWGPRDTTDPVTG
                     KPVTIQQGSPWRLDTIFRTNMSVLYSAGRWAEQMENVDDRPYWMYTGINDSHTRRSHL
                     ALHGLVLRWDDPFWQAFYPPNGWRCRCSVIALSATDVRARGLKVISSGSAMGQELKLV
                     SEKTGEMRNVATFNTGTTKVTTDVGWSYAPGAAYRPDLARYQGTLQPLAQQELRG"
     gene            complement(15687..17183)
                     /locus_tag="OQP62_000814"
     CDS             complement(15687..17183)
                     /locus_tag="OQP62_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 domain-containing protein"
                     /protein_id="HCS1720441.1"
                     /translation="MARGIWVSPDEFVAFSEPQKSLTAQIASRSRAIDFYGLGMYLPN
                     PDPILKAQGRDIRIYRELRTDPLVGGCIRRRKAALKSLERGLERGHASARVFRFIRDM
                     LDDLDLSRIIGEMSDAVLYGYQPCEIMWGRSVRAWAVTDIVGKPPEWFQFDTDNCLRF
                     RARDAGVEGELLSPSKFVVPAQDASYDNPYGFPDLSMCFWPVAFKKGGMKFWLRFAEK
                     FGSPWVIGKHPRGANDAEIEKLLDSMEQMVEDAVAAIPDDSSIELKAADGKADSSEVF
                     RELITLSRSEISIALLGQNQTTEANSNKASAQAGLEVTADIRDADADIIQAAVNQVIR
                     TVVTLNFGDVPCPVWAMWEQETIDDTRATRDEKLTRAGLRLTPQYFKREYQLQDGDID
                     ETPPSERQNNMLPLSFAEAIDADIQAQQQLDDALDILMNGGVLNGTLEPVLAPLFKRV
                     ENGVNPTELLGELAELYPQMNTDDLQERLARILFVANIWGRLHERDNG"
     gene            complement(17183..18724)
                     /locus_tag="OQP62_000815"
     CDS             complement(17183..18724)
                     /locus_tag="OQP62_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720442.1"
                     /translation="MSPMDGRNNLAPVLPDTSALDAPPVLLPYQQRWVADTSPLKVIE
                     KSRRTGITWAEASDNVLTAASSAPAGGMNVYYIAYNQDMTVEYIQACAMWARAFNYAA
                     SEIEEGFWEEDDDDKHIKTYTIKFPDSGFRIVALSSRPSNLRGRQGIIVIDEAAFHEQ
                     LDELLKAALAMLIWGGKVRVISTHDGDDNPFNTLIGDIRAGRQGGSVHRITFREAVSE
                     GLFRRVCLRTGKEWSEASEQAWMASVYKFYAAGASEELDCIPANGGGAWLSRALIESR
                     MSADTPVLRLTCQEGYELLSDEVRFHETQDWLDEHLKPLLEALPADARSFLGRDFGRS
                     GDLSVDYPLLQEKNLVRRVPFVLELRNVPFRQQEQITWYLMDGLPGLLGAAFDARGNG
                     AYLAEYAMQRYGSSRVQQVMPTEGWYREHMPPVKAALEDGNLVDLPKDEDTLDDLRAV
                     QVVNGVPRVPEQRSKAKADGGKRHGDSAIALALAYFASREINKGPVKASSRCRRQAAR
                     MLEGF"
     gene            complement(18775..19320)
                     /locus_tag="OQP62_000816"
     CDS             complement(18775..19320)
                     /locus_tag="OQP62_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001696566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3486 family protein"
                     /protein_id="HCS1720443.1"
                     /translation="MARRSTIEKLPEDVRRWLERALTESGFSGYNELESLLRERGYVI
                     SKSAIHRYGQKIERRYGAIRAATEAARMLTEGAADDQDARSEAVIALIQTELFESIVQ
                     LQEAEEGEVDPKERVALLSKVAKNVATLSRASVNLKKFQSEVRARAQQAASNAEKIAR
                     KGGLSSDAVQALRREILGIAT"
     gene            complement(19320..19631)
                     /locus_tag="OQP62_000817"
     CDS             complement(19320..19631)
                     /locus_tag="OQP62_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000227551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720444.1"
                     /translation="MVDITRVRRESLRWSLLVALNKTRPYTASETLLLDVSRAIYPDT
                     TPLELRRELDYLADRKMVDLEKKPSGDWFADLTRLGVDLVEYTVECGPGIARPEKYWS
                     E"
     gene            complement(19631..19957)
                     /locus_tag="OQP62_000818"
     CDS             complement(19631..19957)
                     /locus_tag="OQP62_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000175095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720445.1"
                     /translation="MTLQVEFWTVVSFLLTFMGFVGGLAKWLFSKTEERQAARFASLE
                     QALQQSASNWGELEKEFMRFKADLPLNYVRREDYIRGQTVIEAKLDALYNKLEVVQQY
                     RNTGGQ"
     gene            complement(19954..20604)
                     /locus_tag="OQP62_000819"
     CDS             complement(19954..20604)
                     /locus_tag="OQP62_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000264665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1720446.1"
                     /translation="MWHLVKKLPWRGILLAILINAFLVGLYAMGYRSGHDSAKRDGDT
                     ALSQLQSAFDAYKTEQATLENAALRAWARRYQEQVAAGQRAEAGYLEQIAQLESRNKQ
                     LQGQINDVTQRWIDEKGKSHPIECVFTRGFVRQYNAALGYDNASVDTGHSDSVAAAGT
                     RSGTATGQPETTDTRLRDSGVSQRDVLANIIDNAGQCRRWRNQINALLDEREGLQK"
     gene            complement(20588..21316)
                     /locus_tag="OQP62_000820"
     CDS             complement(20588..21316)
                     /locus_tag="OQP62_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001104436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HCS1720447.1"
                     /translation="MNWPQITLIILFAFGLGVTAIRHGEPRNDKYSFWWQLAGNLVIV
                     WLLWCGGFFSQARAAQPPQAALQYRDDVIRNARLEWGLSAPVADFAAQLHQESGWRPD
                     VVSPAGAQGLAQFMPATADWISQLIPMLSNREPFNPAWAIRALVSYDRWLWQRVSAAN
                     DCERMAMTLSGYNGGLGWVQRDRRLASQKGLDSTRWFGHVATVNAGRNAASWRENRHY
                     PQRILRELAPRYLTWGGCSCVASG"
     gene            complement(21319..21669)
                     /locus_tag="OQP62_000821"
     CDS             complement(21319..21669)
                     /locus_tag="OQP62_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015365653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative holin"
                     /protein_id="HCS1720448.1"
                     /translation="MKNLKKFIPPVKKPRLSGWLLTSVLLLGIIALVSPQQLPVVIYK
                     LALITLAAVLGYWLDRSLFPKARPGQYLKHDDRLMAEGRFPVQTGLHLVFSAALIRRA
                     LIVAAVCLAVATGL"
     gene            complement(21913..22509)
                     /locus_tag="OQP62_000822"
     CDS             complement(21913..22509)
                     /locus_tag="OQP62_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000003711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein"
                     /protein_id="HCS1720449.1"
                     /translation="MILTDVRYASPNSLSNGDASERLSPEEGLVTEASQRLINDICAK
                     YAGRTQFLGCNDVLIAKRESEKLRDVLKAFAAEKELDGAEKDAFLKSAFEHLHALSKA
                     GEPLSLETLVNAIWPQAPEELSGKLAAEELELSDGFVPDGRVIRALVSFKGKSKYWEL
                     KFDREGKTEGYIDYDPETNIITLRNVPEEFREMWMTEV"
     gene            22553..22936
                     /locus_tag="OQP62_000823"
     CDS             22553..22936
                     /locus_tag="OQP62_000823"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720450.1"
                     /translation="MPTLAHLGKAKLFELMTEDDEELAELADGGTVAGLTLDDVDRMS
                     VRELRQALREARETNAAQQRVLADKNEKIDSLSTRLEKKSRIQPPEPDEEVKKLRAEV
                     TALAVEAESAIAVRLSSAFETLCAY"
     gene            22946..23110
                     /locus_tag="OQP62_000824"
     CDS             22946..23110
                     /locus_tag="OQP62_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001330525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720451.1"
                     /translation="MIDTPRDFMAGLVCQLESTARSLRSTFDLPDEPTGNAAPSWLTE
                     PTPQINGLEA"
     gene            23114..24883
                     /locus_tag="OQP62_000825"
     CDS             23114..24883
                     /locus_tag="OQP62_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001756569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HCS1720452.1"
                     /translation="MNAALTERLVYVARAARDAGHGKRGAIYDAACAELGMSRATLLR
                     RLKEVSVTDKRKKRADAGRSALTRDEAALISATLREATRKNGKRLYSIADAVETLRAN
                     GFISAGRTDETTGEFFPLSEDAISRALRNYGLHPEQLDAPAPYTEVASLHPNHVWQID
                     ASLCTLYYLSNGHKGLQVMDSAKFYKNKPANLARIASDRVWSYEITDHASGWIYVEYV
                     TGAESGENLCSVLINAMQERGGADVLHGVPKILYLDPGSANTAGMTKNMCRSLGIDLI
                     AHKPHNARATGQVEKARDIIERKLEPGLKFRPVHSLEELNALAAKWRSHFNATAVHSR
                     HGKTRTDIWLKITAEQLKKAPSVEVCRELAVAAPELRKVTPKLRVSFRGTEFDVSTVP
                     GVLVGEKLMITRNPWRSDVAQVVLTGEDGHETFFLVEEVRKNEFGFAEGAAVFGESYK
                     ALPETPAQMAAKETEALVTGTDNAADAAAARKAKALPFGGRLDPYKHIDDATLPACIP
                     KRGQASDVRGPRTEQRPMTHVEAAKALRGKFSANGLTWTPEHYRQLTAQYPDGVPEAA
                     LDEVMATLTTPARSSVISIVNGN"
     gene            24894..26060
                     /locus_tag="OQP62_000826"
     CDS             24894..26060
                     /locus_tag="OQP62_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020803496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCS1720453.1"
                     /translation="MLVLKQQLKEARIPQAVVARAVDVSEATLAQIVNHNAWPRTSPG
                     EVRRRLASWLESQGIDTAKSFDAVQGAATPRTAGTTDKTSLSEEENMLLKKQVLFPAT
                     KKAFGLFRDPFADEAMQGSDDVFTTPDIRYVREALYQTARHGGFMAVIGESGAGKSTL
                     RRDLTERINRENAPVIVIEPYIIAMEDNDVKGKTLKAAAIAEAIISTIAPLESIRRSQ
                     DARFRQLHRVLKDSNQAGFSHVLVIEEAHSLPIPTLKHLKRFFELESGFKKLLSIVLI
                     GQPELATKLSERNMEVREVVQRCEVVELLPLDNHLEEFLTFKLQRAGKQLTDIMDASA
                     VDAIRTRLSNPGSHRKNMVSLLYPLAVSNLVIAAMNLAAEIGVPQVNADVVKGV"
     gene            26063..26332
                     /locus_tag="OQP62_000827"
     CDS             26063..26332
                     /locus_tag="OQP62_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000843445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720454.1"
                     /translation="MKSTTGINQQISKVQSAIMALKATNTDVQSITIRGNKPVIRVSR
                     SAHCMRMLEQGKACYLYTGHDHRGYFRQGVFELHGCRVVWPESLW"
     gene            26360..26890
                     /locus_tag="OQP62_000828"
     CDS             26360..26890
                     /locus_tag="OQP62_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001576700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host-nuclease inhibitor Gam family protein"
                     /protein_id="HCS1720455.1"
                     /translation="MAKSTKGAKRIKAAAALWVPGTREEVIEGIRLLGDAHRELVRAE
                     TEMNDAIGDITARYAPLTESLKKRMAELQSGIQTWCEAHRDELTGNGKVKFANLTTGE
                     VQWRNRPPSVSIRGADNVIELLRRLGLERFIRVKEEINKDAILNEKEAVKNIPGISIK
                     SDIEDFSIIPFEQDVQ"
     gene            27179..27451
                     /locus_tag="OQP62_000829"
     CDS             27179..27451
                     /locus_tag="OQP62_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000632581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720456.1"
                     /translation="MITPQEARQRTRALVEHYVNECECRDLTDVKHVLTALISMATQA
                     IVATNGKAAALQVLVNTLTHTAENEVPYRMETTAEGGLHITVSRKH"
     gene            27461..27763
                     /locus_tag="OQP62_000830"
     CDS             27461..27763
                     /locus_tag="OQP62_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000197790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720457.1"
                     /translation="MTRNTELTRTALYRLALQRFGPDAQALKLTEEAAELAASAARNL
                     NGQGSESDLAAELADVEIMTEQLRLQGMDRLIDFHKQKKLERLAARLGVTYTGEII"
     gene            27760..28143
                     /locus_tag="OQP62_000831"
     CDS             27760..28143
                     /locus_tag="OQP62_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001315283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720458.1"
                     /translation="MNRTEQTPQLTPEDAAQRIRVLEDENEYLRKRFEEVDLYFGRNL
                     VVMKAAVIEWRATGDARNGMAWIYNTLCGPGELPPQEEKEAQEYFNRETEVIDRKLAA
                     LYHWFRKYHRTHAAPDQTTTGGTSD"
     gene            28151..28351
                     /locus_tag="OQP62_000832"
     CDS             28151..28351
                     /locus_tag="OQP62_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000763553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720459.1"
                     /translation="MEIVVWAFLLTGIAVCICAGFALVALLTHVVTQWLWEKLKAAYS
                     LKELSDAVRAWEQQKNTGDTEQ"
     gene            28348..29031
                     /locus_tag="OQP62_000833"
     CDS             28348..29031
                     /locus_tag="OQP62_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000131939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2786 domain-containing protein"
                     /protein_id="HCS1720460.1"
                     /translation="MTDQDKHIEKLKKLLALAASGNPHEAALALRRARKLMDVHGITH
                     SDIAMSDIDETISHYWPTGSLRPPRYMLGLMNIIREAFGVNSIIHPGTYPGVGFYGNR
                     ERAALAAYTWEVLARQLKKARQQYISAQNKRIKTATRTSRGDQFAEGWVLAVISEIQS
                     FALTDDERELMQQWLEHKYPQTQTTRARKPGRSRNGDASRYAGFREGQNVRLHRPVSG
                     REQQKLEAR"
     gene            29028..29258
                     /locus_tag="OQP62_000834"
     CDS             29028..29258
                     /locus_tag="OQP62_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000631816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720461.1"
                     /translation="MITLSGNSRKLKACRISARYLFARAFFKNVRPGITIGVIAGREQ
                     VEKYMSGAWWNKDPVIAARNIHISWGDIQNDD"
     gene            29248..29463
                     /locus_tag="OQP62_000835"
     CDS             29248..29463
                     /locus_tag="OQP62_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001297463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720462.1"
                     /translation="MTTESVVCALFWYCFVGWCTAELHRRSGFYSRYSGAGYWISWSV
                     MFLCWPVALPLYVDYIGDAGRRSNNDD"
     gene            29456..29905
                     /locus_tag="OQP62_000836"
     CDS             29456..29905
                     /locus_tag="OQP62_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001610542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein GemA"
                     /protein_id="HCS1720463.1"
                     /translation="MTKQRLIQLIHIARNELGMDEDTYRQMLQGLTGKASTKGMDTTQ
                     LNCVLESMKRKGFRVRPAGKASSGLPLDNHPQSRKIRALWLEMAAAGIVRDRSENALA
                     RWIKRETGISALRWLNTEQASSVIEKLKKWQRRAAGVKHERPESVSK"
     gene            29877..30266
                     /locus_tag="OQP62_000837"
     CDS             29877..30266
                     /locus_tag="OQP62_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001281697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS1720464.1"
                     /translation="MSDLNQFRSKGPELLVELAQHTSETVREIIDIEPAIADQIGQAV
                     ANRMMQVWGGQNVYFPMGMVWKVSQRDREIFREFNGRNHHELARKFGVSLQWVYSVVK
                     RVRKEELDRMQGKLFADEPDVDTEKKE"
     gene            complement(30448..31392)
                     /locus_tag="OQP62_000838"
     CDS             complement(30448..31392)
                     /locus_tag="OQP62_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1720465.1"
                     /translation="MKLKNTLLASALLSAAAFSVHAATELTPEQAAALKPYDRIVITG
                     RFNAIGDAVSAVSRRADKEGAASFYVVDTSEFGNSGNWRVVADVYKADAPKADAPKNR
                     VINGIVELPKDQAVQLEPYDTVTVQGFYRSQPEVNDAITKAAKQKGAYAFYIVRQIDA
                     NQGGNQRITVFIYKQDAKKRIVQSPDAIPADSEAGRAALAQGGEAAKKVEIPGVATSA
                     SPSAEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSVKFTGNYGNMTE
                     ISYQVAKRAAKKGAKYYHITRQWQERGNNITISADLYK"
BASE COUNT         7103 a         8991 c         8547 g         7049 t
ORIGIN      
        1 tttttgacaa acagcgcagg ctcaggaata tctgcgccgt tctggtcttt agccagcttt
       61 tccgccagct tgttcagtac cgtagtcgca aagtttggat cattaccgag agcgtcagcc
      121 agctctttaa gcgtatccag tgtctcaggg gcgctgcctg caagtgccgc aagtgctttg
      181 gccacaaact ccgtcgtcgc cagctttttg ctgttatcac catttgcagg tgtaggtgct
      241 gttggtgtgc cggtgaatgt cggactggct ttcgtcgcgt actgggtatg cgggtcaact
      301 gccgcgatat gtgcagccag gtctgttccg cttttttcga ccttctgttt gaggtatgac
      361 gttcggctgg ccagttgttt agcctggcgg ttagaaattc cgtcaggtcc gcccagaacg
      421 gggtcagaga cctcaatctg gtagatgccg ctttcccact gcggggtttc gggtagattt
      481 gccataatta actgctcccg tggttgtaac taccgtcata acgggtagta ctgttgtatc
      541 gaatggcgac agactgatat tccagacttg ccagatgaca gcgagccgga gcaaaggcag
      601 caagcgtctg acgtaacagc gccgcctgat cgttagtgat gggttgttga aggatgacgc
      661 gatagactgc ccaggcttgt gcatcaccat ggacgaaaag cccgttgtac gtgtgtctgc
      721 cgtcatagcc aatctgcccc gtaccttcaa tcagatccac ttcgccgaag ccaaaacggc
      781 ggataatttc ccggattgac cacggtgttc ctttatagcg gtgtagctcg atagcggatt
      841 tgataagcat gcggcgtaca tcgtccgatt ccgccagttc ccagccatcg ccgaacagcg
      901 agaactgctc gccaagccat ggcagcgcgg aactgtcgac aatatcgacg agaccgacca
      961 tcagtacgct caggtcgatg ttatccagcc gtccggccag tcttcccagc gttctgagac
     1021 tgatatcacc ctcaagcggt ggcgggagtt gtagcacctc agccatcgga caccccggtc
     1081 atgttaagag tgatcgctgt acagtttgcc cattcgtttt ctgccaccac cctcagtgcc
     1141 ggtgtcacca gttcgacctg gtacaccccg gaaacggaca acacgctgat aatctggctg
     1201 ggaacaatat cgcgccccag cgtggcggta cgggatgcca cccagttctg tatggcgctg
     1261 ttagcgttgt cctttaccaa ccttgcatcc tgatcacgat agatcgtaat cctggcttca
     1321 atggtgtaat ccacctgaac aggtgtttta gcccgcacgg tatcagtgag tggtctgact
     1381 ttttcgtcag aacagaaact ctctaccaga gtgaggatac tgctgtccgg cagaccagtg
     1441 ctgagcagcg gatacagctc gacagtgccg ggagcgggag aaagaacagc aacgtcgaca
     1501 atgccgggat gcgcccccat agcatgaaaa cggtatgcac cacggcttcc ggcattggtg
     1561 aatgactccg gggccagcct gatacgctcc cggagccggt catcgtcttc ctgctctgaa
     1621 ccgccagagc tggccgtcag attggtcacc agcaggtcaa tgttatcaat ctcatcgagt
     1681 aactgactga cctgcgccgg ttgccagccg ttgccagcgg tacccggctc ggtacaggtg
     1741 gccgtgacat tgaccagcag caatccggcc ttcagcacca catctgtatc ggtggcaaaa
     1801 ataatactgt cggaagcgct gacgcgggtg cctgccggga tcagcacatc aatggccagt
     1861 gcctcatcca cagagaactg aagtgtggtg gtggcaggct gcgcagcaag gcggtatacg
     1921 tcgaccagtt caccgaggta atcaatcatc ggctcacggg aaaaagcgac cagattctgc
     1981 ttcgccgcct cctgtactgc caccctgacc agcatttcgc gataggccca caggtcaatc
     2041 agcagacgtt cagcctgtgc cgggtacagc gtttttccgg tatccgcttc atacttcgca
     2101 atcatttctg ccgtgatttt atcggcatcg cgttcaataa aatcgggttc tgtcagcgcc
     2161 atagcagttc ctgagtacgg ggttgtccgt ctgagccttt ccagctcacc cggagcgtaa
     2221 gatgttcgcc gtcgacggcg ggtttaaccg acataagctg gcagcggggt tcccagcgcc
     2281 tgatggcatc gacggattcg cgaaccacat gcggaatggc ccggccgaca ggccagtcga
     2341 tataaaggtg cagattgctg ccgaactccg ggcgatgcgg gtcgctgccg cggggagtcc
     2401 gcaggatgat ctggatggac tgccggatat catccagccc ccggacgatt tcgccgggag
     2461 cctgcagagc tggttgccag aatactgagg tcgttttcat ggaggcagta ttgcccccgg
     2521 gaagtaagcg ccgatattaa aggcgtttaa gaaggttcaa tgggaatggt gattagagtt
     2581 ctgaccatca gcaaatatgt tacccgttgc atgggcgctt ccgttgattt ccagatcacc
     2641 attgagtgtc gcggggccgt tgatcgtggt aactcccgtg aggtcgaggt ttttcccttt
     2701 gagagagata tcagcggcaa cctccaccac gatacgctca atacctcctc tgaccgtcag
     2761 cgtatgggtc gcgcggttat aactgaactc cgcgccatca gcgtatttcg taccccggac
     2821 gtttttatca ctgaacggcg gtttatcgac gtctgagtac accgcgccca gaataacacc
     2881 atcctcgccg ttggcatcga gcagcacctc aacctgctcc cccacgtcag ggagccagta
     2941 atccttgtta tcctgggtat tgcgctgtag cacgttaagc cagtttgtgc gcagattatc
     3001 gcattcaggc agacgaacgc gggcctgaac cctgtcggca tcaacggcac tgaccgtacc
     3061 gatctgacgg gtgacaccag tcattttttc ttctccttaa tcaccgtcga tgtactgcca
     3121 tccgggtgat aaaccgtgag tttctgagtt ttttgttttt tccctcttgt gactggcccc
     3181 cgtgccactt ccagctctgt ggtgtagccg ctgttacgct caaacgcatg gcgggcagtg
     3241 attatcagcc atggaccgga taactgtcca aagcccacca gttcaatttt gttgcctgct
     3301 gtcagttgag gcgttcccgt cagcgtcagg gagccgttct gctggtattc gttatgtctg
     3361 gccagtgctg aatccgcttt aatccgggcg ctgtccgggt cgctgacgcg gctgttaact
     3421 ttaagtgagt cagcgctggt aaccttaccg cctttgagct ttttgtcgct ttcacgggta
     3481 ccaccatcag cttcgtagac gatcagtttt ttactgctgc ttttctggtg ttttaccttt
     3541 gcagatttat agacccggtt gatggtgtca cgcagggaaa agcgggccac accctgcggt
     3601 tttaactgcc tgaccggctc ctgactgcgc agtgtggcca gatgagaaaa aatcaactgg
     3661 tcactgacca ctttcactgc ataaccatac tcgctggcca gccggcgcag aaaacccacg
     3721 tcggtttcag catactgggt cacccggtcg attttgatgg actcaatgct gcccaccagt
     3781 ttcagtcggt gctttctggc aatccgcccc gcaacagctg ccagcgtggt gttctcaaaa
     3841 ccacggctgg atttagtccg cagagcactg ttaaccgagg tggccacccc acggatagcg
     3901 acaacggacg cgggcgaact cacttcgatc tcgtctattg agaatgtacc gcaggacagc
     3961 agtttctcgc cctgataacc cattttcagc gtcagcgtgt cacccttgcc cggataccac
     4021 ttatccagcc agcgaccatc ggtgtcatcc agctccacct caatggtatc ggactcattt
     4081 ttgatgttat cgctccagac cacacgggtg acataaggcg cgatatcaga ggtgatgttt
     4141 ttctgcagat accacagagt gaataccggc gtcagcacat cgctgacgct ggttaacgct
     4201 gatgtggctt gcgcagtact gtttatctca gccatggggc aatatcctct tctgtacggg
     4261 catcttcagc ctcaataacc gggatcagta acaacaaccc ggagggcagc accggcgtaa
     4321 tggccacgtg cggattggct gcaataatcc ggggatagcc cagcgggtca ccgtagtact
     4381 gccatgccag cgaatcccag cgctctccgt cacgggtaat atgttcaaga aacatcacac
     4441 actcctcgtc agtattctgg cggccattgc acttaatccc ggagacatgc ggttgaatgc
     4501 tgtgccggcg gcgttaagct gcccggaaac ggtatccaga gcacctgcaa tatttctttt
     4561 gtccacacca ctcagcgccg actgcgcctg ctgtacatac gtggctgcct cactggctgt
     4621 tctggccaga ctgatggcat cgggcatgga ttcagagagt gcattaaacg ccggaacact
     4681 tttccccaga gctccggata tattacccag tccgctcatc agtcccggca cacgggtcag
     4741 cgcgacaacg gggttaccct tcattttctg cgccacccga acggcactga tagtggtctg
     4801 gagtacagac tgcgcctgtt tcgcatagtt gacgccgtta cggacgaact gcgccacccc
     4861 ggaaggcgat ggaacagcac ccgatacagc tccggcaccg ggaacctgcc tgcgtattgc
     4921 cggcggttgc agaggatttt tcgggtcacc ggtgtattcc cggagagaca cggtggcact
     4981 gacagccagc acgttaccgg tgctgtctgt ctgctcgctg gttgcggtca catcggtaat
     5041 cacgaaccag ccgcgatagt caccgttgcc gaagaccagc gccagtgcct gatgggcctt
     5101 catggctgtt cgcactctcg ccagctccac gtcgggcaca caataatgct gatggaagac
     5161 taggcttatc tggatttcgt ccagcctgtc gccgacaaac tgcaggccgg gtttaccctc
     5221 gatgcgggca tgctccgcat aatcgacgcc gaacgtggcc tcgaagccgt cccagtaggt
     5281 aatcagttca aactcaatat cacccagtac ggcaaacatc agctgtactc cttacgttgt
     5341 ttctgagcca gcagacgctc cagcattttt tccagctcat gcaggctcat attcagggca
     5401 ccagtcagcc cggcaggcgc tgcggtttcc ttaccattga ggaaaaactg aggattaaag
     5461 ctgaccttga taccgccaga cgctccaccg ccagttgcag ttgcgccacg gcctgaatat
     5521 ccggcagcca tgatttccgg cgacgggata cggggaacat ccggtgtcat ttcagcggcc
     5581 aggcgctgcc cggccagtgc agcaagcgga gtggtccgtt gcaggccaat ggcggcaccc
     5641 tgcgcgatat tgtcaccaaa gcccataaac acgcgactcg gtgaatggat gcccagcttt
     5701 tcgctgaacc agtcactgat gctgtcaccc attccggtta cgctggtttt gagtgacgcc
     5761 catttgtttc tgatgccatt tatcaacccg tcaataagat gaccaccgaa gtcggtgaat
     5821 ttcgccggca gatcaacgcc gagatatttc agcgcagccg caaaggcttt ataaagcaga
     5881 ccagccggag accagttaac cagcagttta ccaattccca cgatgccgcc gttaaaggct
     5941 tcctgaatgt cagcccagcg ctgtttaaac cagctactga ctgcgcccca gttgcggtag
     6001 ataaggtaag ctgctgccgc gacggcggtg ataacgagac cgatgggatt catcagcagc
     6061 gcccggccaa tccagagaac ggcacgcccg gcgctcataa ttccgcgaac cagcccccct
     6121 gagagcacac cacccagtgt tctggctcct ctggcgacag caccaaagcc tgtcaccagc
     6181 cagcggagtt taccgccttc ccccagtgcg agcgtcagac gaagccagtt ggcccgaagt
     6241 aaaacagcat ttttccagac gcttacaaag ggggaaagaa ggagattcag cccaagcttg
     6301 agaccgatag tggccatcct gaaagcgagt aatgcgccca caacctttat ggtgctgctg
     6361 acgagctgcg gatttgccgc tatccatttg ccaacactgt ccattaaagg aataaatgtt
     6421 tcacccaact ggagcaaagc cggacgcaag gattgcccga tgctgatagc agaatcatta
     6481 aagccgatct gcattctgcg ccagcgacct tcaagcgtat cattctgctt tgcagcatcc
     6541 ttatccaggg tagaaattgc agccggagca ttcatttcct gcttactgga aaggtattta
     6601 tcccagccct gtcgcattga cagtaaatgg ttgacagtct gaatatcggt aaagacctca
     6661 gccagaccaa atgactccat gagtttctgc tgaccttcct gatcgcctct tgctcctgca
     6721 gctttccatt gctgcaagaa cgctttgcct ttactgtcga taaaacggtt ggcaatcatc
     6781 agtgaagctt cgtactgcga aaaaccctga gcgacgtaat tctgcattga cccctggtaa
     6841 tccaccccgg ctttagcata tttctggatg gtatctccgc ggcccattgc tgccagccag
     6901 ttggacatat tggtgaccgc ttcctctgca gagccactac ctttaccgac ctccagactg
     6961 gcaacaatct gggtaatcgc atcttttcca taaataccac gagcagcgaa ggctttagcc
     7021 ataccgggta atgcttttgc catatccttc agctcaaatg acccaagttt ggctcctgtt
     7081 gccgcaatac caaacgcctg ttcaagttct ttcgcatcag tgattctgag tgcatcgctg
     7141 aaggcataag tcattttggc aaggtcggtc atatcggctt tggttgctgt agcggtcttt
     7201 ccaagcatct ctgcaaacgt tgctgcccgt tcgggggcca taccatcagc aactaattgt
     7261 ccgactcccc ctaacagaga ctcctgcagt tggttaacct tcagcgaggc ttgtctgata
     7321 gcctggccaa ttgcacgttc ctgttttgca tccaggtctc ctgtgacact gatatcccgc
     7381 aactgtgatt caaacgaggc atattgttta accgaggcca tgaccggtgc gcccagcgtt
     7441 ctgccaatag cataggtttc tgcaccctga ccatagagcg ccaggcggtt agccttcaac
     7501 gcatcaccgg tggctgatac tgctgacaga cggcgctgct gacgttcaat ttgctccatg
     7561 gtgcggctta cccgcagcaa ctcgctgttg agatgctgca tccgggaaga acccagttga
     7621 ccataacgtt ctgttgcccg ggttaaggca ttctggcgtt cctgcagacg gcgggaggta
     7681 tcaccaaggg aatcaagggc gcgtcgggtg ccactgacgg ctgagcggaa gctgctcccg
     7741 acaatgccgc caataatgac gccgactgaa aattcactgg ccacggtggc tatcctctga
     7801 aagcaaaaaa aacggaaggg aagtgtctga aacccatgca gaacagccgc gactggcggc
     7861 tgttaagtga tacgttgtta ctgattgtcg ccgaactcgc ttttgatttg ctcttcagcc
     7921 tgctccagcc acatctccag atcgtcagta tcgagggcat caatctcccc cggttgaaac
     7981 ctgaaccatc tcgccagcag gccctgcgcc tgcatcagtg tttttgtcgc tcttgcccag
     8041 cccagtgatt ttctgaaatc gtttctgcag ctccatatag tcggcaagat ccatgttatc
     8101 gaggtcttcc gggaggatac cggtgctacg ggcaatcagt ggttcgtccc agtctgccgg
     8161 gtctttgttg attttgcgca cctgcttcag gtcttttact gtcaggcgtt tcagttcaat
     8221 ctgttcaatt ctggtacctg cagcagtggt gaaaggataa gacagcgtaa aagtatcgga
     8281 ctgggtctgt gacatgatca tactcctttg taaattcaga gcagtatgtc tggcggtgga
     8341 cgtgacggat attaaagggg attaagaaga aggggccgga gcccctgtga tgtcagcaag
     8401 tgcgaaaacc cttgcagtta cgcaggaaag cgatgagaag cgcctttccc tcagatttgc
     8461 cggtgccgga gaaccactgg tcgggcggct tccatgcttc aatcaaatcg gccagtttgc
     8521 gggcctttga acgtgtgcag tcaatcgggt cattggtttt acgggtatta aagagggtct
     8581 ccacccccgg aatatcaagg agggtaaacc acgtaccatt tgacatgccc agtgacgcac
     8641 atcgccctcc tttgtcagtc agttcaacac tcaccgtcag cccccgatat tgattcgata
     8701 gtcagtcagt tgatcaacgc caccgacgcg gaagatgttg gccagatagt ccagttgcag
     8761 caactcttca ccatccagta cctgtctgat atacgtgcag gtgaagctac tggagaactc
     8821 ggcgttctcg tgctgtttga acgtccccag cgggttcttc ttgaacataa ttgtcaggaa
     8881 ggtgaccagc gggatttcgt cgatcagccc ctgcgagctg tagcgctgga cgctggagcg
     8941 acactgcagc gccagcgact tgtacgggtt cgcggcagac aacatcgcat cgcggtaaaa
     9001 gctgttccat ttgatttcgc cttccagttt gtcaaaacca gccgggagtt ccaccttacc
     9061 caccatcccc agtgccttgt gctcctgcat aatcatggag acatcgggga gtttaacttc
     9121 ctcagcccgt cccagcaggt tagtaccatc cagatagatg ttggcattcg tgattcggtt
     9181 tatctcaatc tttgacatca gttgccccct ttcagggtta acaggtattc cgaggtgatt
     9241 tcagtctcaa acgtcagtcg ctccagcggc ggtggtggcg tatatttgta gctcagcaac
     9301 aggtgcccgg cggccagctc cgtctccgga ttgcgggccg gatcaaacca gcaacggaag
     9361 cccagtaccg caccatcacc agtcattttg cgaccgtagg cgttgaccga ctccgtcagt
     9421 gcatcaatca gcgcctgagt aatcggcatg tcgatgtact gctggctgaa gtaacgaatg
     9481 gactcgttga tcacatcacc ggtgcggcga acgttctcaa agttacgcat atgggtgacc
     9541 gttggccatg ctgccgtccg gttaccccac agatgaaggc cgctgccgta actgctgaat
     9601 accgtggtga tcccctgttc gttaagcagg ttcacctcgc tctgcggatc gtcaatcatt
     9661 gccgacagct ggcgctccac gccggtgatc cccagaattt cctgattgga ggatgaccac
     9721 cagtaccctt tgtccaggtc gactttggca cgcaggcccg ccgcacgctg gctcagtggc
     9781 tccagacgct ccgtgttcgt caccgggtca tataccttca catgcgggta gcacaggcgg
     9841 acacggtcag agctggtatt aaagttaatg gtgccttccg ggccacgtcc cgccagagcc
     9901 tgcgcaaaag tggtaccaac cggcgcatca atataggtta ctgctcccag tttctcagcc
     9961 atggcgataa gctcaaccga gacgctgttc tgggtgcaga ataccggagc aatcaggatt
    10021 ttggcgaagt agccaaacag gttaaaactg tcgttaagca gcttcatgcc ggtacggttg
    10081 cctgcagcgt taacggtacc gatgatatca gccggggtga ctttggtcgg atcagcatag
    10141 ttatagctgg ccttcaccgt tgcatctgca gcaatgcttt tacccaggtt agtaatcacc
    10201 ccggtctgtg catcaagcga gtagtcctga ccttcaacat aaggctgacc gttgctgtcc
    10261 ggtttcagta ccagctgcgc gaccaccgga ttagccagcc gggctctgcc tgtcgccttg
    10321 tcgaacgaca cattctcact gaccacagcg attttatgca cagacggatc gagtacgtta
    10381 atgaccagaa cggtgcctgc accatggtca taaatcgcat ccagcgcctg cggaatggta
    10441 aagccggtga actggctgcc aaatgccgca gcgtctttct cagacaggca ctgtaccagc
    10501 gtattgacat cccccatcgg ggcggtacca atcaggccaa taacggcaga tttcaccgtt
    10561 ttaaccgggc gggctccgtt ttccacctca atggtttcga cgccatgcag atagttagct
    10621 gccatgggag tcctccgttt tcacttcgct gtcactgctg cttctgcgct ttggtgactg
    10681 cacagccggt gtgacggcgg gtttagtatc ttctggtacc ggcgtcagat gcttcagcgc
    10741 caccagtacc ttcacgtagt catgctcctc cggcagggaa accgtcttcc ccggccagag
    10801 caggatttcg gttccgtccg acagcgtgac gccgctggcc gggccggaat agcggtattc
    10861 tttcatcact cgctttcctc atagttcact tcggttaaca gcgggccgga cggtaaatcg
    10921 ctgtcttcga taaagacgct ttcagtcgcg aagtcgaggg cgtattgcca cagccccctg
    10981 acttcaccga taaacacctc gcgggtcagc cagatacggc ggcggcagcc gggcggggtg
    11041 tggccgccga gaatgcggcg gacagcatcc aggacattaa tcgccccttt tttaccgttg
    11101 agctggcgga agaccaccgt gacgcagagc tggatagtct gagactggat caccgcaccg
    11161 gtatcatccg gcctgtcaaa gcgcgaaccg gcatagctca gcagcaacgc gccaaccgga
    11221 tggttcaggc gatattcagc cggtttctcc gggaagtact ccacctgcag ttgcggcagc
    11281 ttctcgcgta accgggccag taccgcatca aggacgggca gaacgttcat cagtatttct
    11341 ccagtaaacc gtcacgaccg ccgaaagtgg ccgggcggct gcgtacacga aactcgccag
    11401 gctcaggcac atctttctga gtggacggca gccccagcgt gagcctgtta tcacgtaact
    11461 ccctgagttg ccgcagcgct tctttgtggt catccttcac cgtatccggg aggtcacctt
    11521 ccgggcggcg ggcgtagagc cggtaacgga ccagcgtgat ggcaatgtcc cgcagaacag
    11581 tcggtatctc tgccagtggc aggatatagc gtccgcgcag atgggcatca atcagctcgt
    11641 cggcatagcg gatacagctg tccaccacac gggtattcac tgttgcaggc gagtcgaagt
    11701 ccatctcttc actggtgagc tcgatcagcg ttcgttccgg cacctgcgca agcaaatcct
    11761 ccagggtgca gtacatgtca caccccgcgc aggatacgaa tgacgtcgcc ttcacccccg
    11821 gcttcatcaa gtgcaatacc acaggattta ccgtcgccgg actgcggcac ggctctggcc
    11881 tgagcatctg actgaacagc cacaccacgg ctgacagcgg ccccggcctc gacagcaata
    11941 atgcccagaa cgctcaccgg cgtgctgtcg ccggtaacag catccacttc ggcaaccccg
    12001 agcgctgcgg caccggcttt acagggggta ttatctgccc cgacaaaacg ctgctgtgcc
    12061 agtgcggccc ctgccgttac ggttgtgatc agaatgacct gctgagtggt tcccataacg
    12121 cctccttatt tactgatacc ggtaatgaga tacccggcat cgccaccaac cacggcgact
    12181 ttgtagatat cggtataacg gcagtacttc accttgccgc cggctccgtc gtacttgtcg
    12241 gcaacaggca tccccttacg gcgcagggtg tagccgaagg acggctcgtt ctcgtccgcg
    12301 ctgtccgccc ccggctgcgg cttgccgacg taatgcagca tcagattgtc tccccagata
    12361 tccgtcggca cgctgtcctt atccattgcc gctttcatgg acggcaggga gacaggagca
    12421 ccgatgacga tctcttcgat ctgaaagagg tcctgcagga tctccgtggt gatgcgcttg
    12481 cgttcgttgg ctccgatggc tgcctgaatt gccgggtgga acttcagcag cgccatcacg
    12541 ccggccccca tggtcatcag gttaggacgc agccccgtgg ccgtacggac cgcttccata
    12601 ccggcttcaa ttaccccgat ggggtccccc ttaccaccgg cccagcggtc gccggctgtc
    12661 agttttttaa cgtgcccggt acggtagacc ttttcatcct gagccagacg ggcggcgata
    12721 agttcacggc gcagattcac gccattcgtg gcgcgacgga tggccttgct ctcctcgtta
    12781 aacatggact ccgcctgttc gcgatagtcc actggcgcag ccagatcgtg ctcacccagc
    12841 accagatcaa gcgtgccggt tttctcacgg accagaacat tgctgtccgc cccgacggca
    12901 cgctcggtgt catattccac aaaggcggtt ttcccgaagg tcggcacacg cacgccttcc
    12961 ttgtccgtca gcacgacggg gaaaatacgt tcgccaatga atgcggcatt tttatagcct
    13021 cgggcgatac tggtcagtac cggatcaacg acacgtttac cttttaagta atcagacatg
    13081 ctctctcctt aaattacagg cagcgtgcga cagcagcctc atagctgatg ccttcttttt
    13141 tggacagggc cactgctttc tgatgcaggg ccagacgctc aggatcggct tccgcaaact
    13201 ccgccacatc caccttcacc gcgtcgccga cacgatcctt tgtggcctgt tcggcgaagt
    13261 tcatcaccgg ctccccgtcg gagagcaatg aacggaaggc ggtggccagc ggtgtgcggc
    13321 tttccccctc agcaaactcc accggcttgt cgccaccggc gacggcatcc agcagggcaa
    13381 ccaccacgga ggaggcgcgg ggagccagac gcccctctgc gaccagtttt tctgcaaagg
    13441 ccacattgtc cttatgcagt tgctcctgtc tgacctgtgc atcacgcgca tcgcgatcag
    13501 cagcctgctg cttcaggcgg cggttctcct cctgaagggc ttcaatctct tcttttgtca
    13561 tcgatgattc ctcgttactt gcggaagacg gccccgggcc tgtctcactg aattgtgcac
    13621 ctgctgcatc ctgcgacagt gtgtcgcggt acgcctcttc gcgcagactg ttgagctgcc
    13681 attccggcag gactttttct gcctcgtcca gactgaagcg ggcgatcaga aaatcgcgca
    13741 gctttcccca cagggaggca ttcgtgatgg cctgccagtc ggcgaactcc accacacctt
    13801 cttcctgctc actgaaggac acctgtttca gccctttgac ggaaggtggc tgtgccccga
    13861 gaaagcccac atggcgaagg tagagcacgc cgggcttcgg attggacggt gaatccggga
    13921 ggtagaaaga ggcggacact tttttgaatc gtccgtcggt gaccatctca gcaaactgcg
    13981 ggtccagctg ggcaggctct gccatcagat cgacgccgct gagcgacagg gctttcaccc
    14041 agccccacgc cgggtcttcc gttctgggat gaccaatcac gagtggtgct tcatggacgg
    14101 acgggtcata ggctttcacg caggcggcaa gatcgtctgg cgtgaacggc agttttttgc
    14161 cgtgcatatc ggtatgagta ccggctttaa aaatgtgaat ggctgacatt ttgctgtccc
    14221 gcgttatgtt gtcggagaca gtttgtgaga aatgcaggcc cggcgatttt aatctgcttt
    14281 agaaaacatc aggggagaag gacagggaaa gcaatgcggt gaaccggagg cggttataaa
    14341 acagaggctg taaagccttt ataaaggtaa tacagcccct cattcgctgg caatgataaa
    14401 tcacccacct gaagagagaa aactcagcga cgggccgctg attcaagatg gcggacaatg
    14461 gtatcgagga tggggattac cacttcaggc tgtagttctc catcccccgt caccggcagg
    14521 aacgggcggg ccggaagttc aacagactca ttacgccccg ttttaccccc gaactggtga
    14581 atggcaccgt aaacaacgtt ggtccccaca acagcctgcc ggtcgtcatg gtcggttgat
    14641 actgacccca tcagacgccc ggtatcctgc agtgtctgcc cgtcacgttc ttccgctgcc
    14701 agcgagggca tccaccccgg acgcccctca tcaagaaagt taaactgtgt ttccgccagc
    14761 agggttccgg cgattttgcg catcgcgggc tccatgtctg tggcagccag atccagcgca
    14821 cggaggctcc ggcgcaggga tttatcgtta atggtgatac tgaccaggtt atcggaagcc
    14881 attgttatcc tctcagttcc tgttgtgcca gtggctgaag cgtaccctga tagcgggcca
    14941 ggtcgggacg gtatgctgcc cccggtgcat aagaccagcc gacgtcggtg gtcaccttcg
    15001 tggtgccggt attaaaggtg gccacgttcc gcatttcgcc ggttttctct gagaccagtt
    15061 tcagttcctg gcccatggca gagccggagc tgataacctt caggccacgg gcacgtacat
    15121 ccgtcgcact cagggcaatc acactacagc ggcagcgcca gccgttcggc gggtaaaatg
    15181 cctgccagaa cgggtcatcc cagcgcagca ccagaccatg cagcgccaga tggctcctgc
    15241 gggtatggct gtcgttgatg ccggtataca tccagtacgg cctgtcgtcg acgttttcca
    15301 tctgttccgc ccaacgaccg gcgctgtaga gtacggacat attggtgcga aagatggtat
    15361 cgagccgcca cggactgccc tgctgaatgg tgaccggctt acccgttacc gggtcagtcg
    15421 tgtcacgtgg tccccaccat cccttacgct tcagcaccgg ctccagctcc tgccggaacc
    15481 agcgatcggt ttttccttca tcgacagcct gctgcagtgc cccgcgaata tcttccagga
    15541 tatccaggcg ggtcacttta gcaacggtaa aggcgcgggc atgggcctcc tgccacattt
    15601 cttcccagtc ccaggtaatc tgataccctt tggacttcag gtaactgact gcccgcttcg
    15661 ggggaagcgt catgcagtac gccagttcag ccgttgtcac gctcatgcag gcgtccccag
    15721 atatttgcca caaagagaat gcgggccagc cgttcctgca gatcgtccgt gttcatctga
    15781 gggtagagct ccgccagttc gcccagcagc tcagtcgggt taaccccgtt ttcgacccgc
    15841 ttaaacagag gtgccaggac gggttccagc gtgccattta acacacctcc gttcatcaga
    15901 atgtccagcg cgtcgtcaag ctgctgctga gcctgaatat cggcatcaat cgcctcggca
    15961 aatgacagcg gcagcatgtt attctggcgt tccgacggtg gtgtctcgtc aatatcgccg
    16021 tcctgcagct ggtactcacg cttaaagtat tgcggggtca gacgcagacc cgcccgggtg
    16081 agtttttcgt cgcgggtggc gcgggtgtca tcaatggtct cctgttccca catggcccag
    16141 accggacacg gcacatcgcc gaagttcagg gtgaccaccg ttctgataac ctgattcact
    16201 gctgcctgaa tgatgtccgc atccgcatcg cggatatcag ccgttacctc cagcccggcc
    16261 tgtgctgagg ccttgttact gttcgcttcc gtggtctgat tctgaccaag taatgcaatg
    16321 gagatctcac tgcgtgacag tgtgatcagc tcgcggaata cctcgctgct gtccgcctta
    16381 ccatccgcgg ctttgagttc gatgctgctg tcatcgggga tggcggccac cgcgtcctcc
    16441 accatctgct ccatggagtc cagcagtttt tcaatctctg catcatttgc acccctcggg
    16501 tgcttaccga tcacccacgg ggagccaaac ttttcggcaa agcggagcca gaatttcatc
    16561 ccgcctttct tgaaggcgac cggccagaag cacatggaca ggtccgggaa accgtaagga
    16621 ttgtcatacg aggcatcctg tgccggcacc acgaattttg acggtgacag cagctcaccc
    16681 tccacacccg catcacgcgc ccggaagcgc aggcagttgt ccgtatcaaa ctgaaaccac
    16741 tcaggcggtt tgccgacaat atccgtcact gcccacgccc tgaccgaacg gccccacatg
    16801 atttcacagg gctgataccc gtagagcacg gcatcactca tctcaccgat gatgcgggac
    16861 agatccagat cgtcgagcat gtcgcggatg aaacggaaga cccgggcaga agcgtgaccg
    16921 cgctccagtc cacgctccag tgatttgagc gctgctttac gtctgcggat acagccccca
    16981 accagcgggt cggtgcgcag ttcgcggtag atacggatat cccgtccctg agccttgaga
    17041 atgggatcag gattgggcag atacatgccc agtccgtaaa agtcgatcgc gcggctgcgg
    17101 gaggcaatct gcgcggtcag tgatttctga ggctcagaaa aagcaacaaa ttcatcgggt
    17161 gaaacccaga tacccctcgc catcagaatc cctccagcat acgggccgcc tgacgacgac
    17221 agcgtgagct tgccttcacc ggccctttgt taatttcacg gctggcgaaa tacgccagcg
    17281 ccagtgcgat ggctgaatcc ccgtggcgtt taccaccgtc agcctttgct tttgagcgtt
    17341 gctccggcac gcgggggaca ccgttcacca cctgaacggc ccgcaggtca tccagtgtgt
    17401 cttcatcctt tggtaagtcc accaggttac cgtcttccag tgcagctttg accggaggca
    17461 tatgctcccg gtaccagcct tcagttggca tcacctgctg aacccggctg gagccgtagc
    17521 gctgcatggc gtattcagcc agataggcac cattaccacg ggcatcaaac gctgcaccca
    17581 gcagaccggg caggccatcc atcagatacc aggtgatttg ctcctgctgt ctgaacggca
    17641 cgttacgcag ctccagtacg aatggcacgc gtcgtaccag gttcttctcc tgcagcaggg
    17701 gatagtccac cgacaaatca ccgctacggc caaagtcgcg ccccaggaaa gagcgggcat
    17761 cagcggggag tgcctccagc aagggtttca gatgctcatc aagccagtcc tgtgtctcgt
    17821 ggaagcgaac ctcatcagac agcagttcat aaccttcctg acaggtcaga cgcaataccg
    17881 gcgtatcagc ggacatgcgg gactctatca gggcacggga cagccaggcg ccgccaccgt
    17941 tggccggaat acagtcaagc tcttcggatg cgccggcagc gtagaatttg tacaccgacg
    18001 ccatccaggc ctgctcggat gcctctgacc attccttccc ggtgcgcaga caaacgcgcc
    18061 ggaacagccc ctcagatacg gcttcccgga aagtgatgcg atgtacgctg cctccctgac
    18121 gtccggcacg gatatccccg ataagcgtat tgaacggatt gtcgtcaccg tcatgggtgg
    18181 agataacgcg tacctttccc ccccagataa gcatcgccag cgccgctttc agcagttcgt
    18241 ccagttgctc atggaacgcc gcttcgtcga taacaataat accctgacgg ccacgcaggt
    18301 tagacgggcg gctggagagc gcaacaatac gaaagccgga gtcaggaaat ttgatggtgt
    18361 aagtcttgat gtgtttgtcg tcgtcgtcct cttcccagaa tccttcttca atttcactgg
    18421 ccgcatagtt gaatgcccgt gcccacattg cacacgcctg aatgtattcg acggtcatgt
    18481 cctggttata agcgatgtaa tacacattca tcccgcctgc tggcgcagaa gaggcggcgg
    18541 tcagtacgtt atcggatgcc tcagcccatg taataccggt acgacggctc ttttctatca
    18601 ccttaagcgg agaggtgtct gccacccagc gctgctggta aggcaacaga acgggagggg
    18661 catccagcgc cgaggtatca ggcaaaacgg gagcaaggtt attcctcccg tccatgggac
    18721 tcatcccttc ggggccgccg ccagcggcgt ttaaaatcac tccggatgat tttgtcatgt
    18781 ggcaatcccc agaatctcgc gacgaagcgc ctgtactgcg tcgcttgaca gtcccccctt
    18841 acgggcaatt ttctcggcgt tgctggctgc ctgctgcgct ctggcccgta cttcagactg
    18901 gaactttttg aggttgacgg acgcgcggga cagcgtagcc acattcttcg ccaccttcga
    18961 cagcagggcc acgcgttctt taggatcgac ttcgccttct tccgcctcct gcaactggac
    19021 aatactctcg aacagctcgg tctgaataag ggctatcaca gcctccgaac gcgcatcctg
    19081 atcgtctgct gcgccttcgg tcagcatgcg ggccgcttct gttgccgcac ggatagcacc
    19141 atagcggcgc tcaatcttct gtccatagcg atggatagcg gatttgctga taacgtaccc
    19201 ccgctcacgc agcagggact ccagctcgtt atacccgctg aagccggatt cagtcagcgc
    19261 ccgttcaagc cagcggcgca cgtcttccgg cagcttttct attgtgctgc gtctggccat
    19321 tattcactcc agtacttttc cgggcgggca atacccggac cacattccac ggtgtattcc
    19381 accaggtcta cgccgaggcg ggtcaggtca gcaaaccagt cgccagaagg ttttttctcc
    19441 agatcaacca ttttacggtc agccagataa tccagttcgc ggcgcagttc cagcggtgtg
    19501 gtgtccgggt agatggcacg ggacacatcc agcagcagcg tctcgctggc ggtgtaaggg
    19561 cgggtcttgt tcagggcaac cagcagactc cagcgcaggg attcgcggcg tacccgggta
    19621 atatcgacca ttattgacct ccggtattgc ggtactgctg taccacttcc agtttgttat
    19681 aaagcgcgtc cagtttggcc tcaatgactg tctggccacg gatataatcc tctcgacgga
    19741 cataattcag cggtaaatcc gctttaaatc gcataaattc tttttccagc tcgccccagt
    19801 tggaggcgga ttgttgcagg gcctgttcaa gggaggcgaa tcgtgccgcc tggcgttctt
    19861 ctgttttact gaacaaccat ttggcgagcc ctcccacaaa ccccatgaag gtgagcagaa
    19921 aactcactac cgtccagaat tcaacctgca gtgtcatttc tgtaatcctt cccgttcatc
    19981 cagtaacgcg tttatctggt tccgccagcg acgacattgt cctgcgttgt cgatgatgtt
    20041 ggcgagaacg tcacgctggg agacacccga atcgcgtaac cgggtgtcag tggtttcagg
    20101 ttgcccggtc gctgtgccag agcgggtgcc agcggcggca actgagtctg aatgaccggt
    20161 gtcgacggat gcattgtcat atccgagtgc ggcgttgtac tggcgcacga aaccgcgagt
    20221 aaacacgcac tcaatgggat ggctcttacc tttttcatca atccagcgct gtgtgacatc
    20281 gttaatttgc ccctgtagtt gtttattccg gctctccagt tgagcaatct gctcaagata
    20341 accggcttca gcccgctgcc cggcggccac ctgctcctga taccgtctgg cccaggcccg
    20401 cagcgcagca ttctcaagcg ttgcctgctc cgttttgtac gcgtcaaatg ctgactgcaa
    20461 ctgactgagc gcggtatcac cgtcacgctt tgcagagtca tgaccacttc tgtatcccat
    20521 ggcatacagg ccgaccagaa aggcattgat aagaatggcc agcagaatgc cgcgccacgg
    20581 cagcttttta accagatgcc acacaactgc agcctcccca tgtgagatat cgcggtgcca
    20641 gttcgcgcag gatgcgctgc ggataatggc ggttctcccg ccagctggcc gcattgcgtc
    20701 cggcattcac cgtggcgaca tgtccgaacc agcgggtgct gtccagacct ttctgtgatg
    20761 caagccgcct gtcccgttgt acccagccca gaccaccgtt atagcccgac aatgtcatgg
    20821 ccatacgctc gcagtcgttg gcggcgctga cgcgctgcca cagccagcgg tcatagctga
    20881 ccagcgcccg gatagcccat gcaggattaa acggctcacg attgctcagc atcggtatca
    20941 actggcttat ccagtcggca gtggcaggca tgaactgcgc cagtccctga gcgccagccg
    21001 gcgagaccac atcaggtcgc cagccgcttt cctgatgcag ttgcgcggcg aaatcggcca
    21061 ccggcgcaga cagtccccat tcaagccggg cattacggat cacatcatcg cgatactgca
    21121 gcgcagcctg cggaggctgc gctgcgcggg cctgactgaa gaagccgcca caccagagca
    21181 gccagacaat caccaggttg ccagcaagct gccaccagaa gctgtattta tcgttacgtg
    21241 gttctccgtg tctgatggcg gttacgccca gaccaaaggc gaacagaata atgagggtga
    21301 tttgaggcca gttcatggtc acagtcctgt tgccacagcc agacagaccg ctgcaacaat
    21361 cagtgcacgg cggattaacg cagcagaaaa tacaaggtga aggccggtct gcacagggaa
    21421 acgcccttca gccatcagtc tgtcgtcatg tttcaggtac tgaccgggac gggctttggg
    21481 gaagagcgaa cggtcaagcc agtaacccag cactgctgcc agcgtgatga gtgccagctt
    21541 gtagatcaca acaggcaact gctgtggcga gaccagagcg atgatgccca gcaacagcac
    21601 tgaggtcagc agccagccgc tgaggcgagg ttttttaaca gggggaatga attttttcag
    21661 gtttttcatg tgtgtctcct cgtttggtgg agacagcatc acaaatgtgg cgggatacgg
    21721 attttaaaca gcgttaatag tgaagatgta aacgtgcact gcatgatggc tttgaaagaa
    21781 cgaccagccc ggtacccgaa caccgggctg gccatcgccc cacaggaatg cgctgtgagc
    21841 cgacacgaaa cccctcttgg aattccatac gacgatacag agctgtcagc atctcaaatg
    21901 aaatcgccac gattaaacct cagtcatcca catttcccta aattcttcag gtacattacg
    21961 tagggtgata atatttgttt ccggatcata atcaatatag ccttcagttt tcccttcccg
    22021 gtcaaactta agttcccaat atttagactt gcctttaaaa gataccagag cccgaatgac
    22081 tcgaccatca ggaacgaagc catccgataa ctccaactct tcagcagcaa gtttaccaga
    22141 taactcctcg ggagcctggg gccaaatggc attaacaagg gtttcaagac taagtggttc
    22201 accagcctta cttagtgcat gtaagtgttc aaacgcactc ttaagaaatg catctttttc
    22261 agcgccgtca agttctttct ctgccgcaaa tgcttttaaa acgtcacgta acttttcaga
    22321 ctctcgtttg gcgattaaga catcattaca gcctaggaac tgtgtgcgtc ctgcatattt
    22381 tgcacaaata tcgtttataa ggcgctgaga ggcttcagta actagacctt cttcaggact
    22441 caatctctca gaagcgtctc catttgaaag tgagttgggg ctggcatacc ggacatctgt
    22501 gagaatgatg caagcatcga caaaatactt atccccggcg ctgaaaccaa atgtgccaac
    22561 gttggcacat ttgggaaaag ccaaactttt cgaattaatg acagaagacg acgaagagct
    22621 tgccgaactg gccgacggcg gcacagttgc cggcctgacg cttgacgacg ttgatcgcat
    22681 gtcagtacgc gaacttcgcc aggccctgcg cgaagcgcgc gaaaccaacg cagcacaaca
    22741 gcgcgtactc gccgataaaa atgaaaaaat tgattctctc tctaccagac tggaaaagaa
    22801 atcccgtatt cagccgcctg agcctgatga ggaggttaag aagctgcggg cggaagtgac
    22861 agcattagcg gttgaggcgg aatctgctat cgccgttcga ctgtccagcg cttttgagac
    22921 actgtgcgca tattgagctg aaaacatgat tgataccccc agagacttca tggcaggcct
    22981 ggtctgtcaa ctggaaagca cagcgcgtag cctgcgctcc acatttgacc tgccggacga
    23041 gccaacaggc aatgcagcgc cttcatggct gactgagccg acgccacaga ttaacgggct
    23101 ggaggcataa ccaatgaatg ctgccctgac tgaacgactg gtttatgtcg cccgcgcggc
    23161 acgtgacgcg gggcatggta aacgcggtgc aatatacgac gctgcctgtg ctgaacttgg
    23221 catgtcccgc gccactctgc tgcgcaggct gaaggaggtc tctgtgactg ataaacgcaa
    23281 aaaacgcgcc gatgccgggc gcagcgccct gacccgcgac gaagccgcgc tgatatctgc
    23341 cacactgcgt gaggccaccc gcaagaacgg taagcgtctc tattccatcg cggatgcagt
    23401 ggaaaccctg cgggctaacg gctttatctc cgcaggcaga acagatgaaa ccaccggtga
    23461 gtttttcccg ttgtccgaag atgccatcag ccgtgccctg cgtaactatg gcctgcaccc
    23521 ggaacaactg gatgcccctg caccatatac tgaagtggcc agtctgcatc ccaatcatgt
    23581 ctggcagatt gatgcctcgc tctgcacgct ttactacctg agcaatggac ataaagggct
    23641 gcaggtgatg gacagcgcga agttctacaa gaacaagccc gctaaccttg cccgtatcgc
    23701 cagtgaccgc gtgtggagtt acgagattac cgaccatgcc agcggctgga tttacgttga
    23761 gtatgtgacg ggggcggaat ccggtgagaa cctgtgttct gtgcttatca acgccatgca
    23821 ggagcgtggc ggcgcagacg tgttgcacgg tgtgccgaaa atactctatc tcgaccccgg
    23881 ctcggcaaac accgcgggta tgacgaaaaa catgtgtcgc tcactgggca ttgacctgat
    23941 agcgcacaag ccgcataacg cccgcgccac cggacaggtg gaaaaggcgc gtgacattat
    24001 cgaacgcaag ctggagccgg gtctgaagtt ccggccggtt cacagtctgg aagaactcaa
    24061 cgcgctggcc gcgaaatggc gcagccactt taacgccacg gctgttcaca gccgccacgg
    24121 taaaacccgc acggatatct ggctgaagat tactgctgag cagctgaaaa aagcgccttc
    24181 cgttgaggta tgtcgtgaac tggctgtggc ggcaccagaa ctccgcaaag tcacgccaaa
    24241 acttcgtgtc tcgttccggg gcactgaatt tgacgtatca acggtaccgg gcgtactggt
    24301 cggtgaaaaa ctgatgatta cccgtaaccc gtggcgcagc gatgtggcac aggtggttct
    24361 gaccggtgag gacggccacg agacgttctt cctggtcgaa gaggtcagaa agaacgagtt
    24421 tggctttgct gaaggcgcgg cggtatttgg cgaaagttac aaagccctgc cggaaacccc
    24481 ggcgcagatg gcggcaaaag aaaccgaagc gctggtcacc ggtacagaca acgccgcaga
    24541 tgcagctgcc gcacgcaagg cgaaggcgct gccgttcggc gggcggcttg acccgtataa
    24601 acatattgat gacgccacac ttccggcctg tataccgaag cgaggtcagg cctctgacgt
    24661 acgcggaccg cgcactgaac agcgtcccat gactcatgtg gaggccgcga aagccctgcg
    24721 cgggaagttc agcgccaacg gccttacctg gacgccggaa cattaccgcc agttaacggc
    24781 acagtatccg gacggcgtac cggaagccgc actggatgaa gtcatggcta cgctgaccac
    24841 gccggcccgc agcagcgtta tcagcattgt taacggcaac tgaggaggga aacatgctgg
    24901 tactgaagca gcaactgaaa gaggcccgta ttccacaggc ggtggtggcg agagctgtcg
    24961 atgtttctga ggccacgctg gcccagattg tgaatcataa cgcgtggccc cgcaccagcc
    25021 ccggagaagt gcgccggcgt cttgcgtcct ggctggaaag tcaggggatt gatacagcga
    25081 agagttttga tgctgtacag ggcgcggcca cgccccgtac agcgggtacc acagataaaa
    25141 cgagcctcag tgaggaagag aatatgttac tcaaaaaaca ggtgttattt ccagcaacca
    25201 aaaaagcgtt tggtcttttc cgtgacccgt tcgccgacga agccatgcag ggttctgatg
    25261 atgtgttcac cacaccagac attcgctacg tgcgtgaggc gttgtaccag acagcccgtc
    25321 atggtgggtt tatggccgtc atcggtgagt ccggtgcggg taaatccacg ctgcgccgtg
    25381 acctgactga acgtatcaac cgcgagaatg cgccagtgat tgttatcgag ccatacatca
    25441 tcgctatgga agacaacgat gtgaaaggga aaactctgaa ggcagcagcg attgccgaag
    25501 ccattatcag taccatcgca ccactggaaa gcatcagacg cagtcaggac gcccgctttc
    25561 gccagttgca tcgcgtcctg aaagacagca accaggcggg gttcagccac gttctggtga
    25621 ttgaggaggc tcacagtttg cccattccga cactgaaaca cctcaaacgc ttttttgagc
    25681 tggagtccgg tttcaaaaag ctgctgtcca tcgtgctgat tggccagccg gaactggcga
    25741 caaaactctc tgaacgcaac atggaagtcc gcgaagtcgt tcagcgctgt gaggtggtcg
    25801 aacttctgcc tctggacaat caccttgaag aatttctgac gttcaaactg caacgggccg
    25861 gtaaacaact gacggacatt atggacgcca gcgcagtgga tgccatacgt acccgcctga
    25921 gcaatccggg aagtcatcgt aaaaatatgg tcagcctgct gtatccgctg gccgtcagta
    25981 acctggtaat agccgccatg aatctggccg ctgaaatcgg ggttccacag gtcaacgctg
    26041 acgttgtcaa aggggtttaa taatgaaatc caccacaggt atcaaccagc aaatcagtaa
    26101 agtgcagtca gccattatgg cgcttaaggc gacgaacacg gatgtacaaa gcatcaccat
    26161 caggggtaac aaacctgtca tccgcgtttc caggagtgcg cattgcatgc gcatgcttga
    26221 gcagggaaag gcctgttatc tgtataccgg acatgaccac aggggatatt tccgtcaggg
    26281 cgttttcgaa ctgcacggct gtcgcgtcgt gtggccggaa tctttgtggt aatcagcaca
    26341 actggagaaa tcataaaaaa tggcaaaaag tacaaaaggt gcaaaacgta tcaaggccgc
    26401 agcagcactc tgggtgccgg ggacacgtga agaggtcatt gagggcatca gactgctcgg
    26461 tgacgcacac cgtgaactgg tcagggctga aacagaaatg aatgacgcca ttggcgatat
    26521 caccgcacgt tatgccccgc tcaccgagag cctgaaaaaa cgcatggccg aactgcagtc
    26581 cggtattcag acatggtgtg aggcacaccg tgatgaactg accggcaacg ggaaggtgaa
    26641 gtttgctaac ctcaccaccg gcgaggtgca gtggcgaaac cgcccgccgt cagtcagcat
    26701 tcgcggagcg gataatgtta ttgaactact gagacgtctg gggcttgagc gctttattcg
    26761 tgtaaaagag gaaataaata aagacgctat cctgaatgaa aaagaggccg tgaaaaatat
    26821 tcccggtatt tccattaaaa gcgacattga ggatttttca ataattcctt ttgagcagga
    26881 tgtgcagtaa acacaccacg ttaattattt aataaaaaca ttttcttttt tattccggcg
    26941 tcagcgccgt gggcttctgc acgctggaaa cagaggagaa ttaaattatg atatttaaat
    27001 gtattcagtg cgagagggat ataacagccc tgcgttttca cagcgccatc gccgtgatgt
    27061 ccggtaaata ccacatccct gcggtacgcg tcaccctggt ctgcccgtac tgcagccagc
    27121 atttttcggc agacgtgcct gtcatggaat tctcccgccc tgacagggag gacgcgcaat
    27181 gattacccca caggaagcac gccagcgtac ccgcgccctt gttgaacact atgtcaacga
    27241 gtgtgaatgc cgcgacctca ccgatgtgaa gcacgtcctg acggcgctaa tcagcatggc
    27301 cacgcaggcc attgtggcga ccaacggaaa ggcggctgca ctgcaggtac tggtgaacac
    27361 actcacccac acggcagaga acgaggtgcc gtaccggatg gaaaccactg cagaaggcgg
    27421 cctgcacatc accgtcagcc ggaagcactg agggcgcggc atgacacgga acaccgaact
    27481 cacccgcacc gccctctacc gtctggccct gcagcgtttc gggccggacg cacaggccct
    27541 gaaactgaca gaagaggccg ctgaactggc ggccagtgcc gcccgcaacc tgaacggaca
    27601 gggcagcgaa agtgacctcg cggcagagct ggcagacgtg gaaatcatga cagagcagct
    27661 gcgccttcag ggaatggacc ggctgattga cttccacaaa cagaaaaaac tggaacgcct
    27721 tgccgcacgg ctgggcgtca catacaccgg agaaatcata tgaaccgcac cgaacagacg
    27781 ccacaactga cgccggaaga tgctgcacag cgtattcggg tactggaaga cgaaaacgaa
    27841 tacctgcgca agagatttga agaggtggac ctgtacttcg ggcgcaatct ggtcgtcatg
    27901 aaagctgcag tgattgagtg gcgggccacc ggtgatgcca ggaacggcat ggcgtggatt
    27961 tacaacaccc tgtgtgggcc gggcgaactg ccgccgcaag aggagaaaga ggcacaggaa
    28021 tacttcaaca gggaaactga agttatcgac agaaaactgg ctgccctgta ccactggttc
    28081 aggaaatacc acaggacaca cgccgcacct gaccagacca ccacaggagg taccagtgac
    28141 tgacaccatt atggaaattg tggtatgggc tttcctgctt actggtatag ccgtgtgcat
    28201 ctgcgccgga ttcgccctgg ttgccctgct gacccacgtg gtgacgcagt ggttatggga
    28261 aaagcttaaa gcagcataca gcctgaaaga gctgtccgac gctgttcggg catgggaaca
    28321 gcaaaaaaat accggagata ctgaacaatg acagaccagg ataagcacat tgagaaactg
    28381 aaaaagttgc tggcgctggc agcatccggc aacccgcatg aggctgctct ggcactgcgc
    28441 cgcgcccgta aactgatgga tgttcacggc atcacacatt ccgacatcgc catgagtgat
    28501 attgatgaaa ccatcagtca ctactggccg acaggcagcc tccgtccgcc gcgctacatg
    28561 ctgggcctga tgaacatcat ccgcgaggca tttggtgtta actccatcat tcaccccggc
    28621 acatatccgg gtgtggggtt ctacggcaac cgggaacggg ccgcactggc cgcgtacacc
    28681 tgggaagtgc tggcccgtca gctgaaaaag gcgcgtcagc agtatatcag tgcacagaac
    28741 aaaagaataa aaaccgccac ccgcaccagc cgtggagacc agtttgctga aggctgggtg
    28801 ctggccgtta tcagtgaaat acagtccttc gccctgaccg atgacgaacg tgaactgatg
    28861 cagcagtggc tggaacataa atacccgcag acgcaaacca ccagggcgcg taaaccggga
    28921 agaagtcgca atggcgacgc ctcgcgctat gcggggtttc gagaagggca gaacgtcaga
    28981 ctgcaccgac cggtcagtgg gcgggaacag cagaaactgg aggccagatg attacgttat
    29041 caggtaacag ccggaaatta aaagcctgcc gaatatctgc cagatacctt tttgcccgcg
    29101 ccttttttaa gaacgtcagg ccggggatca caattggtgt tattgccgga cgcgaacagg
    29161 ttgaaaaata catgtcaggt gcatggtgga ataaagaccc tgtcattgct gcccgtaata
    29221 ttcatatcag ttggggggat attcagaatg acgactgaat ctgttgtatg tgccctgttc
    29281 tggtattgtt ttgtcggttg gtgtactgct gaactgcacc gccgttcagg gttttattca
    29341 cgttacagtg gtgccggtta ctggattagc tggtcggtga tgttcctgtg ctggcctgtg
    29401 gcacttcctt tatatgtcga ttatatcggt gatgcaggca gaaggagcaa caatgatgac
    29461 taaacaacgt cttatccagc tcattcatat tgcccgtaat gaactgggta tggatgaaga
    29521 cacctaccgc cagatgttac aggggctgac cggtaaagcc tcaaccaaag gaatggatac
    29581 cacacaacta aactgcgtgc tggaatccat gaaaaggaaa ggctttcgcg ttaggcctgc
    29641 aggaaaagcc agctccggtt taccgctgga taaccatccg caatccagga aaatccgtgc
    29701 gctatggctt gaaatggctg ctgccggcat tgttcgtgac cgttcagaaa atgcattagc
    29761 gcggtggatc aagcgggaaa cgggcatcag cgccctgcgc tggctcaata ctgaacaggc
    29821 aagcagtgtt attgagaaac tgaagaagtg gcagcgcaga gctgcgggag taaaacatga
    29881 gcgacctgaa tcagtttcga agtaaagggc cggaactcct ggtggaactg gcacagcata
    29941 cctctgagac cgttcgcgag attattgata ttgagcccgc aattgccgac cagattggtc
    30001 aggccgtcgc gaaccgcatg atgcaggtct ggggcgggca aaacgtttat ttcccgatgg
    30061 gcatggtatg gaaggtcagt cagcgcgacc gggaaatctt cagggagttt aacggacgta
    30121 accaccatga actggcccgc aaatttggtg tttcgcttca gtgggtctac agcgtggtta
    30181 agcgggtaag aaaagaagaa ctggatcgga tgcagggcaa gctatttgct gatgaacccg
    30241 atgtagatac ggagaaaaaa gagtaatatc tgcaatcagg ctggcgcgag ttctgttttt
    30301 gttcgggccg gtctgatttt cacatactgt aaggttattg catattcctc ctggtctctt
    30361 cccattttga cccagttctt cccataaata tctcacttat tccctgtcat ttatctcaag
    30421 tctaatcacc tgatggcgac gcgcgcctta tttatagagg tcggcgctga tggtgatgtt
    30481 attaccgcgc tcctgccact gacgcgtaat atgataatac ttagcgcctt tcttcgccgc
    30541 gcgtttggcg acctggtagg agatttctgt catattgccg tagttgccgg tgaacttaac
    30601 gctgtcgaaa ggcaccatca tcgcagccgt cgctttattc agctcctcaa cttttgtgcc
    30661 atccggaagt gtgacagtgt aacgcccgcc tttggaggat tgcgtttcga agaaacggcc
    30721 tacttcggcg ctcggcgagg ctgacgtggc gacgcctgga atttcgactt tcttcgcagc
    30781 ttcgccgccc tgagccagcg cggcacggcc agcttcagag tctgccggaa tagcgtccgg
    30841 gctctggacg atgcgttttt tcgcatcttg tttatagata aatacagtga tgcgttggtt
    30901 tccgccctga ttcgcatcta tctgacgaac aatatagaaa gcgtatgcgc ctttttgttt
    30961 cgccgctttc gtaatggcat cgttaacttc cggctggcta cggtagaagc cctgaacggt
    31021 gacggtgtca tacggttcta attgtacggc ctggtctttc ggtaattcca cgatgccatt
    31081 aatgacacga tttttgggcg cgtcggcttt cggcgcgtcg gctttataca cgtccgccac
    31141 aacacgccag ttaccactgt tgccgaactc cgaggtgtcg acaacataga aggaggctgc
    31201 gccttcttta tctgcgcggc gggacacggc ggagaccgca tcgccaatag cattaaaacg
    31261 accggtaata acgatgcggt cataaggttt tagtgcagcc gcttgctccg gcgtcagttc
    31321 tgttgctgca tggacagaaa aagcagccgc agaaagcaga gccgacgcca ggagagtgtt
    31381 cttaagcttc ataaaaataa tcctttgcct tgcgcaaacc aggtactggt attgttattg
    31441 actagaaacg tggctgatta ttgcatttaa accatatgga tgtctgcggg atttttcacg
    31501 catcgtgtca tgtatcctat ctttgatgat aacatttact gatatgtcga aaaaaacggc
    31561 gtccgggcgg ctaagctaat gaagcgcata aatttaataa gttaatttaa tgttaatttc
    31621 ttgatctcgc caggggttta atgatgtttt gctgtcaaat ttgagcgaat tatcagccct
    31681 cgcaggccat
//
LOCUS       DAJVSD010000021        31137 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.021, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000021 DAJVSD010000000
VERSION     DAJVSD010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 31137)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31137)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31137
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.021"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..158)
                     /locus_tag="OQP62_000839"
     CDS             complement(<1..158)
                     /locus_tag="OQP62_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1656 domain-containing protein"
                     /protein_id="HCS1720466.1"
                     /translation="MKCILNATGLPLQDLMLGASVYFPPFFKAFALGFVIWLFIHRLL
                     RDRIYSDE"
     gene            353..793
                     /gene="slyA"
                     /locus_tag="OQP62_000840"
     CDS             353..793
                     /gene="slyA"
                     /locus_tag="OQP62_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460407.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator SlyA"
                     /protein_id="HCS1720467.1"
                     /translation="MKLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQ
                     LPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI
                     AEMEEVIHKTRGEILAGISSEEIELLIKLVAKLEHNIMELHSHD"
     gene            complement(841..1308)
                     /gene="slyB"
                     /locus_tag="OQP62_000841"
     CDS             complement(841..1308)
                     /gene="slyB"
                     /locus_tag="OQP62_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein SlyB"
                     /protein_id="HCS1720468.1"
                     /translation="MIKRVLAVSLMGLSLAGCVNNDSLSGDVYTASEAKQVQNVTYGT
                     IVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTIGGGTGRSLATAAGAVAGGVAGQGV
                     QSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSAGQRVVLASNGSQVTVSPR"
     gene            1581..2702
                     /gene="anmK"
                     /locus_tag="OQP62_000842"
     CDS             1581..2702
                     /gene="anmK"
                     /locus_tag="OQP62_000842"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HCS1720469.1"
                     /translation="MKSGRFIGVMSGTSLDGVDVVLAAIDETMVAQQASLTWPIPVHL
                     KKGILDICQGQPLTLSQLGQLDTQLGRLFAQAVNALLAQQRLQPRDIVAIGCHGQTVW
                     HEPTGEAPHTLQIGDNNHIVAHTGITVVGDFRRRDIALGGQGAPLVPAFHHALLGHPT
                     EKRMVLNIGGIANLSLLFPGQAVRGYDTGPGNMLMDAWIWRQCAQPYDKDAAWAKEGQ
                     VILPLLQKMLRDPYFAASAPKSTGREYFNYGWLERHLTAFPGADARDVQATLAELTAV
                     SIAQQVLLNGGCERLMVCGGGSRNPLVMARLAALLPGIEVSTTDKAGISGDDMEALAF
                     AWLAWRTLAGLPGNLPSVTGATEASVLGAIYPANPITQS"
     gene            2790..3119
                     /gene="mliC"
                     /locus_tag="OQP62_000843"
                     /pseudo
     CDS             2790..3119
                     /gene="mliC"
                     /locus_tag="OQP62_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460410.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C-type lysozyme inhibitor"
     gene            3178..3834
                     /gene="pdxH"
                     /locus_tag="OQP62_000844"
     CDS             3178..3834
                     /gene="pdxH"
                     /locus_tag="OQP62_000844"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HCS1720470.1"
                     /translation="MSDNNQLQQIAHLRREYTKGGLRRRDLPAEPLTLFERWLGQACD
                     ARLADPTAMVVATVDDKGQPYQRIVLLKHYDEKGLVFYTNLGSRKAHQIEHNPRISLL
                     FPWHMLERQVMVTGKAERLSTLEVVRYFHSRPRDSQIGAWVSKQSSRISARGILESKF
                     LELKQKFQQGEVPLPSFWGGFRVSIEQMEFWQGGEHRLHDRFLYQRDDGAWKIDRLAP
                     "
     gene            3961..5235
                     /gene="tyrS"
                     /locus_tag="OQP62_000845"
     CDS             3961..5235
                     /gene="tyrS"
                     /locus_tag="OQP62_000845"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HCS1720471.1"
                     /translation="MASSNLIKQLQERGLVAQVTDEDALAERLAQGPIALYCGFDPTA
                     DSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVA
                     KIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQR
                     LNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDLTRRLHQN
                     QVFGLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFT
                     FMDIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLVAAKRITECLFSGSLSA
                     LSEADFEQLAQDGVPMVEMEKGADLMQALVDAELQPSRGQARKTIASNAVTINGEKQS
                     DPEYIFNDEDRLFGRYTLLRRGKKNYCLICWK"
     gene            5295..5954
                     /gene="pdxY"
                     /locus_tag="OQP62_000846"
                     /pseudo
     CDS             5295..5954
                     /gene="pdxY"
                     /locus_tag="OQP62_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460413.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase PdxY"
     gene            complement(5984..6589)
                     /gene="gstA"
                     /locus_tag="OQP62_000847"
     CDS             complement(5984..6589)
                     /gene="gstA"
                     /locus_tag="OQP62_000847"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase GstA"
                     /protein_id="HCS1720472.1"
                     /translation="MKLFYKPGACSLASHIILREIGKDFTLDGVDLAKKRLENGDDYL
                     AVNPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVSSLARYHTLEWLNYIA
                     TELHKGFTPLFRPDTPETLKPAVRAGLEKKFQYVDESLSDDQWICGQRFTIADAYLFT
                     VLRWAYGVKLNMDGSTHIESYMQRVAKRPTVAAALKAEGLN"
     gene            complement(6694..8199)
                     /gene="dtpA"
                     /locus_tag="OQP62_000848"
     CDS             complement(6694..8199)
                     /gene="dtpA"
                     /locus_tag="OQP62_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/tripeptide permease DtpA"
                     /protein_id="HCS1720473.1"
                     /translation="MSTANKKPTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIM
                     AVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKILGTKRVIMLGAVVLAIGY
                     ALVAWSGHDAGIVYMGMAAIAVGNGLFKANPSSLLSTCYAKDDPRLDGAFTMYYMSVN
                     IGSFFSMLATPWLAARYGWSTAFALSVVGMLITVVNFAFCQRWVKSYGSKPDFEPINF
                     RNLLLTIVGIVVLIAVATWLLHNQDIARMVLGVIALGIVIIFGKEAFSMHGAARRKMI
                     VAFILMLQAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAFEPEQYQALNPFWIITGSP
                     ILAAIYNRMGDTLPMPMKFAIGMVLCSGAFLILPLGAKFANDAGIVSVNWLIASYGLQ
                     SIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGANIIGGYVANLMAVPSDVTDP
                     LMSLEVYGRVFMQIGIATAVIAVLMLLTAPKLNRMTQDDDTAEKGSKAATV"
     gene            complement(8800..9435)
                     /gene="nth"
                     /locus_tag="OQP62_000849"
     CDS             complement(8800..9435)
                     /gene="nth"
                     /locus_tag="OQP62_000849"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HCS1720474.1"
                     /translation="MNKAKRLEILTRLRDSNPHPTTELNFTSPFELLIAVLLSAQATD
                     VSVNKATAKLYPAANTPAAMLELGVEGVKSYIKTIGLFNSKAENVIKTCRILMDKHNG
                     EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVE
                     EKLLKVVPNEFKVDCHHWLILHGRYTCIARKPRCGSCLIEDLCEYKEKVDI"
     gene            complement(9435..10127)
                     /locus_tag="OQP62_000850"
     CDS             complement(9435..10127)
                     /locus_tag="OQP62_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit E"
                     /protein_id="HCS1720475.1"
                     /translation="MSEIKDIVVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLA
                     TTLVLTLTNLTVSALRRWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFI
                     PLIVTNCIVVGRAEAFAAKKGPWLSALDGFSIGMGATGAMFVLGSLREILGNGTLFDG
                     ADSLLGGWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAVKYLIDEKMKKRRAETA
                     PSAVPAGETGKV"
     gene            complement(10130..10750)
                     /gene="rsxG"
                     /locus_tag="OQP62_000851"
     CDS             complement(10130..10750)
                     /gene="rsxG"
                     /locus_tag="OQP62_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxG"
                     /protein_id="HCS1720476.1"
                     /translation="MLKTIRKHGITLALFAAGSTGLTAVINQMTKSTIHEQALQQQHA
                     LFDQVLPPDRYNNNLQESCYLVDAPALGKGTHRVFIARKDDKPVAAIIEATAPDGYSG
                     AIQLIVGADFNGTILGTRVTEHHETPGLGDKIERRLSDWITHFSGKTISGENDTHWAV
                     KKDGGDFDQFTGATITPRAVVNAVKRAGLYAESLPAQLPHLTACGE"
     gene            complement(10754..11812)
                     /gene="rsxD"
                     /locus_tag="OQP62_000852"
     CDS             complement(10754..11812)
                     /gene="rsxD"
                     /locus_tag="OQP62_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxD"
                     /protein_id="HCS1720477.1"
                     /translation="MVFRIASSPYTHNQRQTSRIMLLVLIAALPGIAAQTWFFGWGTL
                     FQIVLAAITALVAEAIVLRLRKQSVASHLQDYSALLTGLLLAVSIPPLAPWWMVVLGT
                     GFAIIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPYEIAATTPDILDTLR
                     MIFSGHTASGGDMTLLRIGIDGISQATPLDTFKTSLRAGHSVEQIMQYPIYSGALAGV
                     GWQWVNLAWLVGGVFLLWQKAIRWHIPVSFLLTLALCAALGWLFSPATLASPQLHLLS
                     GATMLGAFFILTDPVTASTTNRGRLIFGALAGVLVWLIRSFGGYPDGVAFAVLLANIT
                     VPLIDYYTRPRVYGHRKG"
     gene            complement(11813..13834)
                     /gene="rsxC"
                     /locus_tag="OQP62_000853"
     CDS             complement(11813..13834)
                     /gene="rsxC"
                     /locus_tag="OQP62_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxC"
                     /protein_id="HCS1720478.1"
                     /translation="MLKLFSAFRKDKIWDFDGGIHPPEMKSQSNGTPLRQVPLAPRFV
                     IPLKQHIGAEGELCVSVGDRVLRGQALTRGRGRMLPVHAPTSGTVIAIAPHSTAHPSA
                     LAELSVIIDADGEDRWIEREGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQG
                     GDDKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKP
                     QAISMLRAVLADAHDISLRVIPTKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNV
                     GTAYAVKRAVVDGEPITERVVTLTGEAISRPGNVWARLGTPVRHLLNDAGFCPSADQM
                     VIMGGPLMGFTLPWLDVPVVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLL
                     PQQLYWFSKGQQHDKATAHHIADCIECGACAWVCPSNIPLVQYFRQEKAEINAIRLEE
                     KRAAEAKARFEARQARLEREKAARLARHKSAAVQPAAKDQDAIAAALARVKEKQAQAT
                     QPVVIQAGSLPDNSAVIAAREARKAQARAKQAAHPMADSAISGDDPRKAAVEAAIARA
                     KARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQAGSEPAEPVDPRKAAVEAA
                     IARAKARKQEQQTVSEPVEPADPRKAAVAAAIARVQAKKAAQQQVVNED"
     gene            complement(13827..14405)
                     /gene="rsxB"
                     /locus_tag="OQP62_000854"
     CDS             complement(13827..14405)
                     /gene="rsxB"
                     /locus_tag="OQP62_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxB"
                     /protein_id="HCS1720479.1"
                     /translation="MNTIWIAVGALTLLGLVFGAILGYASRRFAVEDDPVVEKIDAIL
                     PQSQCGQCGYPGCRPYAEAVGLQGEKINRCAPGGEAVMLKMAELLNVEPQPCDGEEQQ
                     AAPVRMLAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTH
                     CIELRPVNETPDSWKWDLNTIPVRIIPVEQHA"
     gene            complement(14405..14986)
                     /gene="rsxA"
                     /locus_tag="OQP62_000855"
     CDS             complement(14405..14986)
                     /gene="rsxA"
                     /locus_tag="OQP62_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017456621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxA"
                     /protein_id="HCS1720480.1"
                     /translation="MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLA
                     TTFVMTLASICAWLIDTWILIPLDLIYLRTLAFILVIAVVVQFTEMVVRKTSPALYRL
                     LGIFLPLITTNCAVLGVALLNINLGHHFLQSALYGFSAAVGFSLVMVLFAAIRERLAV
                     ADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL"
     gene            complement(15063..15503)
                     /locus_tag="OQP62_000856"
     CDS             complement(15063..15503)
                     /locus_tag="OQP62_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2569 domain-containing protein"
                     /protein_id="HCS1720481.1"
                     /translation="MTTTPPQRIGGWLLGPLAWLLVALLSASLALLLYVMALATPQTF
                     KTLSGQETGNLLLWGISFITAIAMWYYTLWLTIAFFKRRRCVPKHYIIWLLVSVLLAV
                     KAFAFSPVSDAFAVRQLLFPLLATALIVPYLKRSARVKTTFVNP"
     gene            complement(15592..15807)
                     /gene="ydgT"
                     /locus_tag="OQP62_000857"
     CDS             complement(15592..15807)
                     /gene="ydgT"
                     /locus_tag="OQP62_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460424.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription modulator YdgT"
                     /protein_id="HCS1720482.1"
                     /translation="MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAAD
                     HRRAELVSGGRLFDVGQVPQSVWRYVQ"
     gene            complement(16106..16231)
                     /gene="blr"
                     /locus_tag="OQP62_000858"
     CDS             complement(16106..16231)
                     /gene="blr"
                     /locus_tag="OQP62_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division septum protein Blr"
                     /protein_id="HCS1720483.1"
                     /translation="MNRLIELTGWIVLIISVILLGIANHIDNYQPPEPTASVQKK"
     gene            16439..17479
                     /locus_tag="OQP62_000859"
     CDS             16439..17479
                     /locus_tag="OQP62_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310359.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS1720484.1"
                     /translation="MNDKIRVGLIGYGYASKTFHAPLIMGTPGLELAAVSSSDETKVK
                     ADWPAVSVVSEPRHLFNDPHIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLS
                     QARELDALARSTGRVLSVFHNRRWDSDFLTLKALLADGVLGEVSLFESHFDRFRPQVR
                     DRWREQGGPGSGIWYDLAPHLLDQAIQLFGLPVSMTVDLAQLRPGAQSTDYFHAILSY
                     PQRRVILHGTMLAAAESARYIVHGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRD
                     GVLTLVEGETRKEENWLTLPGNYPAYYAAIRDALNGNGENPVPASQAIQIMELIELGM
                     ESAKHRATLCLA"
     gene            complement(17553..18554)
                     /gene="add"
                     /locus_tag="OQP62_000860"
     CDS             complement(17553..18554)
                     /gene="add"
                     /locus_tag="OQP62_000860"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HCS1720485.1"
                     /translation="MIDITLPLTDIHRHLDGNIRAQTILDLGRQFNIALPAQTLETLI
                     PHVQVTSTEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARNGLHYVELRFSPG
                     YMAMAHQLPIAGVVEAVIDGVRDGCNTFGVEARLIGIMSRTFGEAACLQELDALLAHR
                     EKITALDLAGDELGFPGSLFLSHFNRARDAGWHITVHAGEAAGPESIWQTIRELGAER
                     IGHGVKAVEDRALMDFLAQQRIGIESCLTSNIQTSTVASLADHPLKTFLEHGVLASLN
                     TDDPAVQGVDIIHEYHVAAPAAGLSREQIRQAQINGLEIAFLSDSEKRALREKVAAA"
     gene            complement(18780..18911)
                     /locus_tag="OQP62_000861"
                     /pseudo
     CDS             complement(18780..18911)
                     /locus_tag="OQP62_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000459379.1"
                     /note="catalyzes the formation of homocysteine and
                     pyruvate from cystathionine; also acts a a negative
                     regulator for the mal regulon but interacting with the
                     transcriptional activator MalT; internal stop; incomplete;
                     partial in the middle of a contig; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
     gene            complement(18921..19141)
                     /locus_tag="OQP62_000862"
                     /pseudo
     CDS             complement(18921..19141)
                     /locus_tag="OQP62_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310356.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIB"
     gene            complement(19260..20768)
                     /locus_tag="OQP62_000863"
     CDS             complement(19260..20768)
                     /locus_tag="OQP62_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HCS1720486.1"
                     /translation="MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLAEMVTQANEQL
                     KRTAPEAGVELSYQNYQRGVFSSHLQLVVKPVAGADNTWLKPGQSIVLDESVSHGPFP
                     LAQLKTLNLIPSMASVKTTLVNNDAAKPLFDIAKGDAPFVINTRIGYGGDTRSDISLK
                     PLNYENAGEKVAFSGGEFQLNADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLK
                     TDGTSKLASFGERVGDQKLTLDKLSIAIEGKEMAVLEGMEIAGKSDLVNDGKTINSQL
                     DYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYHAQTQALLNQPDVAQNPELY
                     QQKVTEAFFSALPVLLKGDPVLTLAPLSWKNAKGETTLNLSLFLKDPATTTAQPQTLA
                     QEVDRSVKSLDAKLAIPMDMAVEFMTQIAKLEGYQQDDAEKLAKQQVQGLSAMGQMFR
                     LTTLKDNTIASSLQYANGQITLNGQKMPLEDFVGLFGMPALSVPDVPALPQQ"
     gene            complement(20871..22046)
                     /gene="manA"
                     /locus_tag="OQP62_000864"
     CDS             complement(20871..22046)
                     /gene="manA"
                     /locus_tag="OQP62_000864"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase"
                     /protein_id="HCS1720487.1"
                     /translation="MQKLINSVQNYAWGSKTALTELYGIANPQQQPMAELWMGAHPKS
                     SSRITTANGETVSLRDAIEKNKTAMLGEAVANRFGELPFLFKVLCAAQPLSIQVHPNK
                     RNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALAPFLAMNAFREFSDIVSLLQP
                     VAGAHSAIAHFLQAPNAERLSQLFASLLNMQGEEKSRALAVLKAALNSQQGEPWQTIR
                     VISEYYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAG
                     LTPKYIDIPELVANVKFEPKPAGELLTAPVKSGAELDFPIPVDDFAFSLHDLALQETS
                     IGQHSAAILFCVEGEAVLRKDEQRLVLKPGESAFIGADESPVNASGTGRLARVYNKL"
     gene            22246..23892
                     /gene="fumB"
                     /locus_tag="OQP62_000865"
     CDS             22246..23892
                     /gene="fumB"
                     /locus_tag="OQP62_000865"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000066594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fumarate hydratase"
                     /protein_id="HCS1720488.1"
                     /translation="MSNKPFFYQDPFPLKKDDTEYYLLTSEHVSVAEFEGQEILKVAP
                     EALTLLARQAFHDASFMLRPAHQQQVADILRDPQASENDKYVALQFLRNSDIAAKGVL
                     PTCQDTGTAIIVGKKGQRVWTGGGDEAALARGVYNTYIEDNLRYSQNAALDMYKEVNT
                     GTNLPAQIDLYSVDGDEYKFLCIAKGGGSANKTYLYQETKALLTPGKLKNYLVDKMRT
                     LGTAACPPYHIAFVIGGTSAEANLKTVKLASAKYYDALPTEGNEHGQAFRDIELEKEL
                     LLEAQNLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINREGFW
                     IEKLERNPGKYIPEALRQAGEGEAVRVDLNRPMSEILQQLSQYPVSTRLSLNGTIIVG
                     RDIAHAKLKERMDRGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQ
                     LQSQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKRLECVEYPEL
                     GMEAIWKIEVEDFPAFILVDDKGNDFFQQIQSSQCARCVK"
     gene            24060..25463
                     /gene="fumC"
                     /locus_tag="OQP62_000866"
     CDS             24060..25463
                     /gene="fumC"
                     /locus_tag="OQP62_000866"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HCS1720489.1"
                     /translation="MVTVRREKDSMGVIEVPADKLWGAQTQRSLEHFRISTEKMPVSL
                     IHALALTKRAAAKVNQDLGLLAAEKASAIIEAADEVLAGKHADEFPLAIWQTGSGTQS
                     NMNMNEVLANRASEILGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALREHL
                     IPQLSALTDTLRDKSHAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLRHIEHS
                     LPHVAELALGGTAVGTGLNTHPEYARRVAEELATITAAPFVTAPNKFEALATCDALVQ
                     AHGALKGLAASLMKIANDVRWLASGPRCGIGEIAIPENEPGSSIMPGKVNPTQCEAVT
                     MLCCQVMGNDVAINMGGASGNFELNVYRPMVIHNFLQTVRLLADGMASFNQHCASGIE
                     PNRERITQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKASAVALGYLSDAEF
                     DAWVRPELMVGSMTPGR"
     gene            complement(25460..26389)
                     /locus_tag="OQP62_000867"
     CDS             complement(25460..26389)
                     /locus_tag="OQP62_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication terminus site-binding protein"
                     /protein_id="HCS1720490.1"
                     /translation="MSRYDLVERLNGTFRQIEQHLAALSDNLQQHSLLIASVFSLPQV
                     TKEAEHAPLDTIEVTQHLGKEAEALALRHYRHLFIQQQSENRSSKAAVRLPGVLCYQV
                     DNATQLDLENQVQRINQLKTTFEQMVTVESGLPSAARFEWVHRHLPGLITLNAYRTLT
                     LINNPATIRFGWANKHIIKNLSRDEVLSQLKKSLASPRSVPPWTREQWQFKLEREYQD
                     IAALPQQAKLKIKRPVKVQPIARIWYKGQQKQVQHACPSPIIALINTDNGAGVPDIGG
                     LENYDADNIQHRFKPQAQPLRLIIPRLHLYVAD"
     gene            complement(26465..27766)
                     /gene="rstB"
                     /locus_tag="OQP62_000868"
     CDS             complement(26465..27766)
                     /gene="rstB"
                     /locus_tag="OQP62_000868"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     RstB"
                     /protein_id="HCS1720491.1"
                     /translation="MKKLFVQFYLLLFVCFLVMTLLVGLVYKFTAERAGRQSLDDLMK
                     SSLYLMRSELREIPPREWGKTLKEMDLNLSFDLRVEPLNHYKLDAATTQRLREGDIVA
                     LDDQYTFIQRIPRSHYVLAVGPVPYLYFLHQMRLLDIALMALIAFSLAFPVFIWMRPH
                     WQEMLRLESAAQRFGEGHLTERLHFDNGSSFERLGVAFNQMADNINALIASKKQLIDG
                     IAHELRTPLVRLRYRLEMSENLTPPESQALNRDIGQLEALIEELLTYARLDRPQNELM
                     LTKPDLPAWLFAHLQDVQSVNPERAVNLLTCVIGDYGALDMRLMSRVLDNLLNNALRY
                     SRTTVQVSLLLDGSQATLIVEDDGPGIEADARERVFEPFVRLDPSRDRATGGCGLGLA
                     IVHSIALAMGGSVVCDDSELGGAKFSFRWPVWHAMPDMTAA"
     gene            complement(27877..29583)
                     /locus_tag="OQP62_000869"
     CDS             complement(27877..29583)
                     /locus_tag="OQP62_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HCS1720492.1"
                     /translation="MLMISLVPPLLSRTALLFLLTATGAATAARPAADIILHNGNIIT
                     LNDAQPQASALAISGSRIVAIGDDTATNEWRGDHTRTIDLQGKTVIPGLTDTHIHAIR
                     GGQTWTFETYWYDSPSLKDALDKLRADANRRPHDQWVAVVGSWIPAQFAENRASTVAE
                     LSHALPDHPAYIQYLYDYALVNQRGIDVLGLNDTPPPDLAGIRVERDAKGSATGKLFG
                     DIAAFNQLFASISSNADREGGLRQFFADMNARGVTGIIDPSAGPAAAYEPLFAMRNQG
                     DLPLRVGYRIPVQPEAKGHEAQWFSNLMAFRPARADDGQLAFLGLGESLVAGMNDGVR
                     MAPGFSSSEQDKTALRQVATFAAKRGIPLEIHAYTDDSADAILTIFEQVAQQYDLRPL
                     RWSIAHLNTGSPQTLERMRKLGLAYTVQMGPYFEGLAIRDANPPGATDNSPPVRLALD
                     KGLVVAGGTDSTRIGIAGVWHAIEYHITGIASGGSVRKPASERLTRLEALALYTRHAA
                     WLAFAEQHRGQLSVGKQADLAVLNQPFMTMPEDRIDTIRAVLTLVDGRIVHESPDLNA
                     GQ"
     gene            complement(29736..30887)
                     /gene="ompS2"
                     /locus_tag="OQP62_000870"
     CDS             complement(29736..30887)
                     /gene="ompS2"
                     /locus_tag="OQP62_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpS2"
                     /protein_id="HCS1720493.1"
                     /translation="MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYF
                     SDDSSKDGDQTYMRVGFKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGL
                     KFGDYGSFDYGRNYGVLYDVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFF
                     GLVDGLNFALQYQGKNESQSADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFS
                     AGAAYTTSDRTNEQVNAGGTIAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGK
                     TDKGYDGGVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYA
                     DVGATYYFNKNFSTYVDYKINLLDDDDPFYKDAGISTDDIVALGMVYQF"
BASE COUNT         7532 a         8045 c         8366 g         7194 t
ORIGIN      
        1 atttcatcag agtatatccg gtcacgcagg agtcggtgaa taaacaacca gataacgaac
       61 ccaagcgcaa aggctttgaa gaatggcgga aagtaaacag atgctcccaa catgagatct
      121 tgtaagggca atcctgtggc gttgagtata cacttcacaa gcaatgttcc tttgcgtcag
      181 acatcgatgc tttagtttta gccaaaaccg aagctacagg tgccaggtgc gcactatgtc
      241 tgaaaaaatg tctattggta agcaaattta gcaatacatt tgttttgaga atacaaatac
      301 tgcacactat tctaaaatca gcataataac ttagcaagct aattataagg aggtgaaatt
      361 ggaatcgcca ctaggttctg atctggcacg gttggtgcgc atttggcgtg ctctgattga
      421 ccatcgcctc aagcctctgg aattgacgca gacacattgg gtcacgttgc acaatattca
      481 tcaattgccg cctgaccagt cgcagattca attggctaaa gcgataggca ttgagcagcc
      541 atcgctggta cgcacgttgg atcaacttga agataagggg ctaatttcgc ggcaaacctg
      601 cgccagcgat cgtcgcgcta agcggattaa actgaccgaa aaagcggagc cgctgatcgc
      661 tgagatggaa gaggtcattc ataaaacgcg cggtgaaatt ttggctggga tttcttcaga
      721 ggagattgag cttctgatta aacttgtcgc taaacttgaa cacaacatta tggaattgca
      781 ctctcacgat tgaggtgcag gggcatacgt gtggccatgt gaccacacgt aaagcctggt
      841 ttagcgtgga gagacagtaa cctggctgcc gttgctggcc agcacgacac gctgacctgc
      901 cgagaaacgc gtatttcctt gtttctgcac aaccataatg gtgttgccat cgtctttacg
      961 aatttccagt tccacaccct gggttttatt cattgcgctc tggacgccct ggcccgctac
     1021 gccaccagcc accgcgcctg ccgcggtcgc cagtgaacga cccgtaccgc cgccgatagt
     1081 gttgccgagg aatccgccca acaccgcgcc gccgatagcg ccaatcacgt tagaatcatc
     1141 accgccctga atttgaaccg gacgaacgtt aacgatagta ccgtacgtta cattctgaac
     1201 ttgtttagcc tcggatgcgg tataaacatc acccgaaagg ctatcattgt taacacaccc
     1261 agctaaggat aaccccatca gtgaaacggc cagtacacgt ttaatcattt acccatctcc
     1321 tgttcttcac gaaacgctat ttcagcatcc ctatagctaa attatatggc atttatgcag
     1381 ttaaggtcat atcttctgcc gaaagaatgt aaaaatcata atcagaagtt aattaactaa
     1441 tcttaaacga agtgggaagc aagaaaagat aggttattga tatccgtgga cggcacggca
     1501 aaaaacgtga cgcgggcatc gcattgcaaa atacgttatg ccgagtgtta aggcttaacc
     1561 cagcttaata aggaagaggt atgaaatcgg gccgttttat tggcgttatg tccgggacca
     1621 gccttgatgg tgtggatgtt gtactggcgg caattgatga aaccatggtt gcgcaacagg
     1681 caagtctcac ctggcccatt cccgttcatc tgaaaaaagg cattctcgat atttgccagg
     1741 gacaaccgct tacgctctcg caactcggcc agctggatac ccagttaggc cggctttttg
     1801 cacaggcggt taatgcgctg ttagcgcaac aacgtttgca gccgcgggat atcgtcgcca
     1861 ttggttgtca tgggcaaacg gtctggcatg agccgaccgg cgaggccccg catacgctgc
     1921 aaattggcga taataatcac atcgtcgccc atacggggat tacagtggtc ggcgattttc
     1981 ggcggcggga tattgcgctg ggcggacaag gcgcgccgct ggtgcccgct ttccatcacg
     2041 cgctgttggg acatccgacg gaaaaacgta tggtcctgaa tatcggcggc atcgccaatt
     2101 tatctctgct tttccccgga caggcggtgc gcgggtacga cacggggccg ggtaatatgt
     2161 tgatggatgc gtggatttgg cgacaatgcg cgcagcccta cgacaaagac gcggcatggg
     2221 cgaaagaagg tcaggttatt cttccattgc tgcaaaagat gttgcgcgat ccgtactttg
     2281 ctgcgtcggc gcccaaaagt acaggacgcg aatatttcaa ctatggctgg ttagagcgtc
     2341 atcttacggc tttccctggc gcagacgcgc gcgatgtaca ggccacgctg gcggagctga
     2401 cggcggtctc catcgcccaa caggtgctgc tcaatggcgg ctgcgagcgg ctgatggtct
     2461 gtggcggcgg aagccggaat ccgttagtga tggcccgtct ggcggcgctg ttgcccggta
     2521 tcgaggtttc gaccaccgat aaggcgggga tcagcggcga tgatatggaa gcgctggcct
     2581 ttgcatggct tgcctggcga acgctcgcgg gcctgccggg aaatttacct tccgtgacgg
     2641 gggctacaga agccagtgtt ttaggcgcta tttacccggc taacccaata actcagagtt
     2701 aactgaattt ttcccggacc ctatatcggt aaactagcaa ggtcaggaag gggcgtttgc
     2761 ccttccagaa gcaggagagc tttcgggata tgcctatgaa aaagatcgca ataatgtttt
     2821 tacctgtgct gctgaccggc tgtagcgttt atcaacaatt tgttgaacgt atgcaaacgg
     2881 atacgctgga atatcagtgt gatgagaagc cgcttaccgt taaagccaat aacccgcgtg
     2941 aagaggtcag ttttgtttat gacaataagc tgctgaccct gaagcaagga atctcggcct
     3001 cgggcgcgcg ttataccgac gggatttatg ttttctggtc gtaaggcgag agcgccacgg
     3061 tctataaacg agacagaatt gtgcttaata actgtcagtt acaaaatccg aagcgttgag
     3121 attttcagta tgggggcgca caatagcgcc acccactgat tatttctgat caacgccatg
     3181 tctgataaca accaattgca gcagatcgcg catctgcgcc gtgaatacac gaaaggcggc
     3241 ttgcgtcgcc gcgatttacc cgctgaaccg ttaaccttat ttgagcgctg gcttgggcaa
     3301 gcgtgtgacg ccagactggc cgatccaacg gcaatggtcg tggcgaccgt agatgacaag
     3361 gggcaaccgt accagcgtat cgtattgctc aaacattatg atgaaaaagg cctggtcttt
     3421 tatactaacc tgggaagccg caaggcgcat caaattgagc acaatccgcg tatcagtctg
     3481 ttatttccct ggcatatgct tgaacgccag gtgatggtga caggcaaagc cgagcgtctc
     3541 tccacacttg aggtggtgag gtatttccac agccgtccgc gcgacagcca gatcggcgca
     3601 tgggtctcta aacaatccag ccgcatttcc gcgcgcggta tcctcgaaag caaattcctg
     3661 gagctcaagc agaagtttca acagggcgaa gtgccgttac ccagcttctg gggtggtttt
     3721 cgcgtgagta tcgaacagat ggagttctgg cagggcggcg aacatcgtct gcacgatcgc
     3781 tttttatacc aacgcgacga cggcgcatgg aaaatcgacc gtcttgcgcc ctaaagatgc
     3841 aaaaatcttg ttttaagcac tggtgcggat gaatccgccg ttttatgcta tgtctctttc
     3901 gcgtctggcg aaaagtcgtg taccggcaaa ggtgcagtcg ttttatacat ggagattttg
     3961 atggcaagca gtaacttgat taaacaattg caagagcggg ggctggtagc ccaggtgacg
     4021 gacgaagacg cgttggcaga gcgactggcg caaggcccga tcgcgctcta ttgcggcttc
     4081 gatcctaccg ctgacagctt gcatttgggg catctggttc cattgttatg cctgaaacgc
     4141 ttccagcagg cagggcacaa acctgttgcg ctggtaggcg gcgcgaccgg tctgattggc
     4201 gacccgagct ttaaagccgc cgagcgtaaa ctgaacactg aagagaccgt tcaggagtgg
     4261 gtggcgaaaa ttcgtaaaca ggttgcccca ttcctggact ttgattgcgg cgaaaactcc
     4321 gccatcgcgg ccaataacta tgactggttc ggcagcatga atgtgctgac tttcctgcgc
     4381 gatatcggta aacatttttc cgttaatcag atgatcaaca aagaagcggt gaagcagcgt
     4441 ctgaaccgtg acgatcaggg tatctctttc acggagttct cttataacct gctacagggg
     4501 tacgacttcg cttgtctgaa taaactgcac ggcgttgcct tacagattgg cggttctgac
     4561 cagtggggga acatcacttc cggtatcgac ctgacccgtc gcctgcacca gaatcaggta
     4621 tttggtttga ccgttccgct gattaccaaa gctgacggca cgaaattcgg taaaaccgaa
     4681 ggcggcgctg tctggctgga tccgaagaaa accagtccgt acaaattcta ccagttctgg
     4741 attaacaccg cagatgccga tgtttatcgc ttcctgaaat tcttcacttt tatggacatt
     4801 gaggagatca atgccctgga agaagaagat aaaaacagcg gtaaagcgcc gcgcgcgcag
     4861 tatgtactgg ccgagcaggt gacgcgcctg gttcatggtg aagaggggct ggtcgcggcg
     4921 aaacggatca ctgaatgcct gttcagcggt tcactgagcg cgctgagcga agctgacttt
     4981 gagcagttgg cccaggacgg cgtaccgatg gttgaaatgg aaaaaggcgc cgacctgatg
     5041 caggcgctgg tagacgccga actccagccg tcacgtggtc aggcgcgtaa gactatcgcc
     5101 tccaacgctg tcactatcaa tggtgaaaaa caatccgatc ctgaatacat ctttaacgat
     5161 gaggaccgtc tgtttggccg ctatacctta ttacgtcgcg gcaaaaagaa ctattgtctg
     5221 atttgctgga aataaggcat taagtaacag ggagtgagaa atcactccct tatttttgat
     5281 gttcaggtaa aaaaatgaag aatatcctcg ctatccagtc ccatgttgtt ttcggacatg
     5341 cgggcaacag cgccgccgaa tttcccatgc gccgtcttgg cgcgaatgtt tggccgctga
     5401 ataccgttca gttttctaac cacacgcaat atggtaaatg gaccggctgt gtcatgccgc
     5461 ccagccatct gactgagatt gtccagggga ttgcggacat tggccagtta gcgcactgcg
     5521 acgccgtact tagcggttac ctgggatctg ccgagcaggg agaacacatt ctcggtattg
     5581 tgcgccaggt taaagcagca aatccgcagg caaaatattt ctgcgatccc gtgatggggc
     5641 atccggaaaa gggttgtatc gtggcgcctg gcgtcgcaga gttccatgtg cgttatgcgc
     5701 tacccgccag cgatattatc gcgcctaacc tgattgaact ggaaattctc agcaaacata
     5761 gcgtgaataa tgtgaatgac gccgtgcagg tggcgcgaga actgattgct caggggccag
     5821 aaattgtact ggtaaaacat ctcgcccgcg ccggttacag ttcagaacgc tttgaaatgc
     5881 tgctggtgac agcgcaggaa gcctggcata ttagccgtcc gctggtggat ttcggctcac
     5941 gtcagccggt tggcgctaca gcgagctatc cggcaacatg acattaattc agtccttccg
     6001 ctttaagcgc tgccgcaacg gtcggtcttt ttgcgacacg ctgcatataa ctttcaatat
     6061 gcgttgaccc gtccatattc agttttacgc cataggccca acgcaatacg gtaaacagat
     6121 aagcgtctgc aatggtaaaa cgctggccgc aaatccactg gtcgtctgaa agcgactcat
     6181 ccacatactg aaatttcttt tccagaccgg cgcgaacggc gggtttaagt gtttccggcg
     6241 tgtcagggcg gaacagcggg gtaaagcctt tatgcagttc cgttgcaata tagttgagcc
     6301 attccagcgt atgatagcga gcaagactac ttaccggcgc cagaagctgg cggtcgggaa
     6361 cgctgtcggc gaggtactgc ataatggcga cgccttcagt caacagtgtg ccgtcatcca
     6421 gcagcagagc cggaacctgt cctttagggt tgactgccag gtaatcatca ccgttttcca
     6481 ggcgtttttt cgcgagatcg acgccatcaa gcgtaaagtc tttgccaatt tcgcgcagga
     6541 taatatggga agcaagagag caggcacccg gtttgtagaa cagtttcatc ggtaactcct
     6601 ttttgctgag gtttaaagta tggtagtgcg gggacgagca aaaaaaaagc cgctaacgca
     6661 cagttagcgg cctgaatgtt gtttcccgga aaattaaact gtagcggctt tagagccttt
     6721 ttcagcggta tcatcgtcct gggtcatacg gttcagctta ggcgctgtca gcagcatcag
     6781 gacggcgata acggcggttg ctatgccaat ctgcataaat acgcgaccat agacttctag
     6841 ggacatcagt gggtcagtca cgtcgctcgg cacagccatc aggttggcga cataaccgcc
     6901 gatgatgtta gcgcctgccg ttgtcaggaa ccagctaccc atgatgaagc ccatcagacg
     6961 ctgcggaacc aactgtgcga ccattgccag gcccagaccg gagatcatca gctcaccgat
     7021 actttgcagg ccgtagcttg cgatcagcca gtttacggat acgatgccgg catcgttcgc
     7081 aaatttggcg cccagcggca gaatcaggaa cgcgccggaa cacagcacca taccaatggc
     7141 gaatttcatc ggcatcggca gcgtatcgcc catcctgtta taaatagcgg ccagaatcgg
     7201 gctgccggta atgatccaga atgggttcag cgcctgatac tgttccggtt cgaacgcgat
     7261 accgagaata gagtgctcga cgttacgaat ggcaaagaag ttcagcgacg tcggcatctg
     7321 gctgtacagt acgaagaaga taatcgcctg cagcatcaaa ataaaggcga cgatcatttt
     7381 acggcgagcc gcgccgtgca tggaaaacgc ttctttaccg aaaataatga cgatgccaag
     7441 agcgattacg cccagcacca tacgcgcgat atcctggttg tgcagcagcc aggtggcgac
     7501 cgcaatcaga acgacaatac ccacgattgt cagcagcaga ttacggaagt tgatcggttc
     7561 aaagtcgggt ttggaaccgt agcttttcac ccagcgctgg cagaaagcaa agttaacgac
     7621 ggttatcagc ataccgacga cgctaagcgc aaacgcggtg ctccagccat aacgcgccgc
     7681 cagccacggc gtcgccagca tagagaagaa ggagccgatg ttgacggaca tataatacat
     7741 cgtaaatgcg ccgtcgagac gcggatcgtc cttcgcgtaa caggtagaca gcagggaaga
     7801 cgggttagct ttaaacagac cattacccac agcgatagcc gccatgccca tatagacgat
     7861 gccagcgtca tgaccagacc atgcgaccag cgcataaccg atagccagca ccacggcacc
     7921 cagcataata acgcgtttgg tgcccagaat tttatcacct aaccaaccgc caatggcgac
     7981 caggccgtac accagcgcac tgaaggaaga gaaaagggtg atggaatccg cttctgacat
     8041 acccagttgt tttaccaggt agacggccat aatgccttgc aggccgtaat aaccaaaacg
     8101 ctcccataac tctatcgaga agattagata gaacgccttc ggttgtttga aagcgttcaa
     8161 actgacgctt tcagttggtt ttttgtttgc agtagacact tttacctctt ttttacgccc
     8221 cgtattaaca gggattgtct ggcgcgtgat gagtcagact catccgtccg attgttatat
     8281 tggaggggaa acggcaggta atgttcacta tctttcctct ccagacaaga gctttgtaat
     8341 aatctgttac atataactct tctggttgaa tcgtccgatg tcagaaatgt tatccagcgt
     8401 taaatttctt catttgaaga atggcagatt tttacactgc aaaaaggcca ttagtttgga
     8461 taaaaggcga tatcttctgc tatttaaggt gaaaagcagt gatataggcc attatctgaa
     8521 aaaatggcag agtaatgttt tgtagtgaaa acggggcgtc agtctatccg gttgtaaatg
     8581 taaccttagg tgtcattaaa tttcacatga agttatcaaa gtgatcctga tcacggatag
     8641 atagaaattt ttgcgattaa aaaatgatta acctgacgtg gagggaaaac gaaagcacat
     8701 tacatcagaa aaaggacaga gactggaatg attgatggct aaaatagatc caggccgaag
     8761 gtgggagcgc gctggtatga cgggcgcact ccgaccatat caaatatcga ctttttcttt
     8821 gtattcgcaa aggtcttcaa tgaggcagga gccgcagcgg ggttttcggg cgatacaggt
     8881 atagcggcca tgcaaaatta accagtgatg gcagtccact ttgaactcat tcggcaccac
     8941 tttcagtaac ttctcttcta cctgctcgac atttttaccc ggcgcgaact gtgttcggtt
     9001 gcatacacga aatatatgcg tatcaacggc gatggtcggc cagccgaagg cggtatttag
     9061 caccacgtta gcggttttac gccccacgcc gggaagcgct tccagcgccg cccgatcctc
     9121 cggcacttcg ccattatgct tgtccattaa aatacggcag gtcttaatca cgttttccgc
     9181 tttactgtta aataagccga tggttttgat ataggatttc acgccttcta cgcccagttc
     9241 cagcatcgcg gctggcgtat tggcggccgg gtaaagtttg gcggtcgcct tgttcacgct
     9301 gacgtcggtt gcctgcgcgg aaagcaacac ggcaatcagc aactcaaacg gcgacgtgaa
     9361 attgagttcc gttgtggggt gcggattgct gtcgcgcagg cgcgtcagaa tttccagcct
     9421 ttttgctttg ttcatcagac tttccctgtt tcaccggccg gaacagcgga aggcgcggtt
     9481 tcggcgcggc gtttcttcat tttttcatca ataagatatt ttaccgccag catgagtccc
     9541 agaccgataa acgcgcctgg cggcagcatc gccagcagga aaggcgagtc ggtgtgaaat
     9601 atctcgaccc gtaatacttt tgcccagcct cccagcaggc tatccgcgcc atcgaaaagc
     9661 gtaccattcc cgaggatctc gcgcagtgag cccagcacga acatcgcgcc tgtcgcgccc
     9721 atgccgatgg aaaaaccgtc caacgcggaa agccacggtc cttttttcgc ggcaaacgct
     9781 tcggcgcgac caacaactat gcagttcgtt acaatcagcg gaataaaaat ccctaaagac
     9841 tgatacagac cgaacgcata cgcattgatc agcatctgta ctgcgctgac caccgaagca
     9901 atgatcataa cgtaaatcgg gatacggatt tctgccggcg tccagcgacg tagtgcggac
     9961 accgtaaggt tggtcagcgt taataccagc gttgtggcga gacccagccc cagagcgttg
    10021 gttgccgtag acgtcactgc cagtaaaggg cacaggccaa gtagctgcac cagagcagag
    10081 ttatttttcc ataacccctg aacaacaatg tcttttattt cgctcatggc tattctccac
    10141 aggcggttaa atgggggagc tgagcgggca gtgattcggc gtacagcccg gcgcgtttaa
    10201 ccgcattcac tacggcgcgc ggcgttattg tcgccccggt aaattgatca aaatcaccgc
    10261 catctttttt caccgcccag tgcgtatcat tttcaccgct gatggtttta ccgctaaagt
    10321 gggtaatcca gtcagacaaa cggcgctcaa ttttatcacc taaccctggc gtctcatgat
    10381 gttccgtcac gcgcgtcccc aggatagtac cgttgaaatc tgcgccaaca ataagctgga
    10441 tagcgccgga atagccatct ggcgcggtgg cctcaatgat ggccgctacg ggtttatcat
    10501 ccttgcgagc gataaaaaca cggtgtgtgc ctttgccgag ggcgggcgca tcgaccagat
    10561 aacagctctc ttgcagatta ttattgtaac gatctggcgg caatacctga tcgaacaggg
    10621 catgttgttg ttgcagcgct tgttcgtgga tggttgattt tgtcatctga ttaatcaccg
    10681 cggtcaatcc cgtagagcct gcggcaaaaa gcgccagcgt aataccgtgt ttacgaatcg
    10741 ttttcagcat ggtttatcct ttgcgatgtc catagacgcg ggggcgcgtg tagtagtcga
    10801 tcagaggaac cgtgatattc gccaacagga cagcaaaagc aacgccgtcc ggatagccgc
    10861 cgaagctacg aatcagccac actaataccc cagccagcgc gccgaaaatt aaacgtccac
    10921 ggttggtcgt ggaggcggta accggatccg tcaagataaa aaatgcgccc agcatggtgg
    10981 cgcctgacag cagatgaagc tgcggcgagg ccagcgtagc gggcgagaaa agccaaccta
    11041 acgcggcgca tagcgccagc gtgagcagaa aactgaccgg gatatgccag cggatggctt
    11101 tttgccacag caggaatacg ccgccgacaa gccaggcgag gttaacccac tgccagccca
    11161 cgccagccag cgcaccgctg tatatcgggt actgcatgat ttgctcaacg gagtgcccgg
    11221 cgcgcaagga cgttttaaac gtatccagcg gcgtcgcctg gctgataccg tcaataccga
    11281 tacgtagtag cgtcatatcg ccgccgctgg cggtatgccc gctaaaaatc atccgtaacg
    11341 tgtccagtat atcgggcgtt gttgcggcta tttcataagg cggcaaccag cttgtcattt
    11401 gcaccggaaa ggaaattaat agcaccacgt agccgatcat ggccggatta aaggggtttt
    11461 gtcccagccc gccatataac tgtttagcga taataatggc gaatccggtt cccagcacga
    11521 ccatccacca gggcgcgagc ggagggatgc tgaccgccag caaaagcccc gtcaataacg
    11581 cggaataatc ctgcaggtga ctggcgaccg attgtttgcg cagtctaagg acaatggctt
    11641 ccgcgacgag cgccgtgata gcagccagaa cgatctggaa aagcgttccc caaccaaaaa
    11701 accacgtctg cgcggcaatc cccggcagag cggcgattaa taccagcaac atgattcgcg
    11761 atgtctggcg ctggttatgg gtataaggcg agcttgcgat tctgaatacc atttaatcct
    11821 cgttaacaac ctgctgctgt gctgcttttt ttgcctgaac gcgagcgata gccgcagcaa
    11881 ccgcggcttt acgcgggtcg gccggttcga caggttcgct tacggtctgc tgctcctgct
    11941 tacgggcttt ggcacgggcg atcgccgctt ccaccgcggc tttacgcgga tcgaccggtt
    12001 cggcgggttc gcttccggcc tgctgctcct gtttgcgggc tttggcgcgg gcgatagccg
    12061 cttccaccgc ggctttacgc gggtcgaccg gctcggcagg ttcgcttccg gcctgctgct
    12121 cctgcttacg agctttggcg cgggcgatag ccgcttccac tgcggcttta cgcggatcgt
    12181 cgccggatat cgcgctgtca gccatcggat gagcggcttg tttagcgcgc gcttgcgctt
    12241 tacgcgcttc acgggccgcg atgacggcgc tattgtctgg cagactaccc gcctgaataa
    12301 ccaccggttg cgtggcctgc gcctgtttct cttttacccg cgccagcgca gcggcaatgg
    12361 catcctgatc ttttgccgct ggttgtaccg ctgcgctctt gtgacgtgca aggcgggcgg
    12421 ctttttcgcg ctccagtctt gcctgacgag cctcaaaacg cgctttggct tcggcggcgc
    12481 gtttttcttc aagcctgatc gcattaatct ccgctttttc ctgacggaaa tattggacga
    12541 gcggaatatt actcgggcag acccaggcgc aggcgccgca ttctatacaa tcagcaatat
    12601 ggtgagcggt agccttgtca tgctgctgcc ctttgctgaa ccaataaagc tgctgcggta
    12661 aaaggtcggc agggcaggcg tcagcgcaag cgctgcaacg aatacagctt ttctcttcct
    12721 gaggcgcccc catttcagtc acggatggcg ccagcaggca gttggtgatt tttacgaccg
    12781 gtacgtcaag ccagggaagg gtgaatccca tcaacgggcc gcccatgatg accatctggt
    12841 cagcagaggg gcagaacccg gcatcgttaa gcaaatgacg aacgggagtg ccgagccgcg
    12901 cccagacgtt acccggacgg cttatcgctt cacccgttaa ggtgacgacg cgttctgtga
    12961 tcggttcgcc gtcaaccacg gcgcgtttca cggcatatgc cgtaccgacg ttttgcatca
    13021 gcacgccaat atcagaggag cgcccgccgt ggggaacctg ttttcccgtc agtatttggg
    13081 tgagctgttt tgcgccgccg gaagggtatt tggtcgggat aacacgtaat gaaatatcat
    13141 gagcgtcagc cagtacggcg cgcagcatgg aaatagcctg cggtttgtta tcttcaatgc
    13201 cgattaatac ctcacgcggt tgcagaatat gcgccaggat gcgaatacct tccacaatct
    13261 gcgcggcgca gtcctgcatc agacgatcgt ccgccgtaat gtaaggttcg cactctgcgg
    13321 cattgataat aagcgtggtg attttatcgt cgccgccctg caatttaacg ccggtgggaa
    13381 accctgcgcc gccaagcccg gcaacgccat actgatgaat gcgttcaatg agcgcttcac
    13441 ggctgtgggc gcggtaatca gaccagccct cgcgttcaat ccagcggtcc tcgccgtcgg
    13501 catcaatgat gacgcttaac tccgccagcg ccgaaggatg cgccgtcgag tggggcgcaa
    13561 tagcgataac cgtcccggag gtgggcgcgt gtaccggcag cattctccca cgtccacggg
    13621 taagcgcctg gccgcgtagc acgcgatcgc cgacgctaac gcacagctcg ccctcagcgc
    13681 caatgtgctg ttttaaaggg ataacaaagc gcggcgccaa aggcacctgg cgcagcggcg
    13741 tgccgtttga ctgggacttc atttcgggcg gatgaatacc accgtcgaaa tcccagattt
    13801 tatcttttct gaaagcggaa aatagtttaa gcatgttgtt ccacgggaat gatgcgaacg
    13861 ggaatggtgt tcaaatccca tttccaactg tcgggcgtct cattcaccgg acgtaattcg
    13921 atgcagtgcg tcggacacgg atcgacgcac agattacagc cagtacagag atcgctcatg
    13981 accgtgtgca tggcgcgcgt tgcgccaacg atggcgtcaa ccgggcaggc ctgaatgcat
    14041 tttgtgcagc caatgcagtt attttcatca ataactgcca gcatacgtac tggcgcggcc
    14101 tgctgttctt caccatcgca tggttgcggc tctacgttta gcaactctgc cattttcagc
    14161 atgacggctt cgccgccggg cgcgcaacga ttgattttct cgccctggag acccacggct
    14221 tcggcgtagg ggcgacagcc gggatagccg cactgaccac actgactctg cggcaaaatc
    14281 gcatcgattt tttcaacaac cggatcatct tcaaccgcga atcggcggga ggcataaccc
    14341 agaatggcgc cgaacaccag acccagaagg gtcagggcgc caacggcaat ccagatagta
    14401 ttcattacaa cttcaccaaa ccactaaagc ccataaaggc caaagacatt aatcctgcgg
    14461 taatcaatgc tatcgcgtta ccacgaaaag gggcgggcac atccgccacg gcaaggcgtt
    14521 cgcggatagc ggcaaacaga accatcacta atgaaaaacc gacggcggcg gaaaatccgt
    14581 acagcgccga ctgaagaaag tgatgaccga gattaatatt cagtaacgct acgcccagaa
    14641 ccgcacagtt agtggtaatc agtggtaaga agatgcctaa caagcggtat aacgccgggc
    14701 tggttttccg cacaaccatt tcggtaaatt gcacgaccac agcaatgacg aggataaagg
    14761 ccagcgtccg cagataaatc agatccagcg gaataagtat ccaggtgtcg ataagccagg
    14821 cgcatatcga cgccagcgtc atgacaaagg tcgtcgcgag gcccatcccc atggcggttt
    14881 ccagtttttt ggatacgccc ataaagggac aaaggcccag gaatttgacc agtacaaagt
    14941 tattgaccag tacagttccg acaaagagca gcaggtaatc agtcatgttt cggcctgaaa
    15001 taaaaaagcc gcctattatc tgtcaaacta ccacaggcga caacaggtta actgtagggt
    15061 tattacggat taacaaacgt tgttttaacg cgcgctgaac gtttgagata aggcacaatg
    15121 agcgccgtcg ccaacagtgg gaagagtaac tgacgcacgg caaaggcatc tgagacgggc
    15181 gaaaaggcaa atgctttaac cgccagtaac accgacacca gcagccagat aatgtaatgc
    15241 tttggcacgc agcgtctgcg cttgaagaat gcgatcgtca accacaaggt atagtaccac
    15301 atggcgatag cggtaataaa tgaaatgccc catagcagta aattaccggt ttcctgtccg
    15361 ctaagcgttt tgaacgtttg cggtgtggca agcgccataa cgtagagtaa taacgccagc
    15421 gaggcgctca acaacgcgac taacagccag gctaacgggc caagaagcca gcctccaatt
    15481 cgttgtggcg gtgttgtagt catatcttct ccggggttac gcgcgttaac ggtcatgccg
    15541 ctcattttgg ggcaaatatt ataaggtttt tgatgttaaa cgctactttc tttattgcac
    15601 atagcgccag acggattgcg gaacctgacc tacatcaaac aggcgtcctc cggaaaccag
    15661 ctcggcacgg cggtgatctg cagcgcgata catattaacg atgtccatgt catcagtaag
    15721 ggtatagtta aggtggtcga acagtttttc cagactttcg agcgaactaa ttttgcggaa
    15781 ttttaataga taatcctgaa cagtcatata aagttgatcc atattaaata taatgccaac
    15841 ggagtagtca ctgataaaaa aataaacaaa attgcaccag tgagaggtca ggggtgcagg
    15901 taaaaaggga atattcttac cggtaaagag tcaggcgcca catggcgcct ggggcgaaag
    15961 gttaacgcgc tttactacaa caggcaataa acgtcagacc agatagaaca tatttcgttt
    16021 tttttgccgg tttttgactt ttctttgcac gccccggggc gctgcttacc gtaccgcgcg
    16081 aaaatgcctt tacattatct gacgcttact tcttctgaac ggaagccgtg ggctcaggtg
    16141 gttggtaatt gtcaatatgg ttggcaatac ctaaaagaat gactgagata atgagaacta
    16201 tccacccagt taattcaata agacgattca ttattgacga catttgcttt gatttatcca
    16261 taaacacaga gagtaaatgt tactttcctg gcgaacggtc ggcaagaggg aggggaacga
    16321 tttcagcctc tgttctgtaa caagttaatc atttgatgct acgttgatgg tcaggacgct
    16381 attgcggcta gtcgcacgat ggtgtggaat agcgatatct aaaaccggag gcagtgagat
    16441 gaatgacaaa atccgcgttg ggttaatcgg ttatggctac gccagtaaaa cctttcatgc
    16501 gcccttaatt atgggaacgc cagggttaga gcttgcggcg gtatccagca gcgatgaaac
    16561 aaaagtgaaa gcagactggc cggcggtctc cgtggtctct gagccccgac atttatttaa
    16621 cgatccgcat atcgacctga tcgtgatccc gacgcccaac gatacccatt tcccgctggc
    16681 gaaagctgcg ctggaagccg gtaagcatgt ggtggttgat aaacccttta ccgtgacact
    16741 gtcacaggcg cgagaattgg atgcgcttgc gcggagcact ggtcgggtac tttccgtctt
    16801 ccacaaccga cgctgggaca gcgatttttt gacgctgaag gccttgctgg cggatggcgt
    16861 gctcggcgag gtgtccttgt ttgaatccca ctttgatcgc ttccgtcccc aggtgcgcga
    16921 ccgctggcgc gagcaaggcg ggccgggaag tggtatctgg tacgatctgg cgccgcactt
    16981 gttggatcag gccattcaac tttttggcct gccggtcagc atgacggtgg atttagcgca
    17041 actgcgtccg ggcgcgcaat ctacagatta tttccacgcg attttatcct acccccagcg
    17101 ccgcgtgatt ttgcacggta cgatgctggc cgcggcggaa tccgcgcgat acatcgttca
    17161 tggttcgcgc ggtagctatg ttaaatatgg cctcgatccc caggaagaac ggttaaaaaa
    17221 cggcgagcgt ttaccgcagg aagactgggg atacgacatg cgtgacggcg tattgaccct
    17281 ggttgaggga gagacgcgca aagaagagaa ctggcttacg ttgccgggta actatccggc
    17341 atattatgcc gccatccgcg atgcgttaaa cggtaacggt gaaaatcccg tgccggcaag
    17401 ccaggcgatt caaattatgg agttgattga actgggcatg gaatcggcaa aacatcgcgc
    17461 gacgctgtgt cttgcctgag atgtcgcatt tctccgcctg ggatagcatt aaaccgcagg
    17521 cggagaagag cgttagtgtc aataaagcaa tcttacgccg cggccacttt ttcgcgtagc
    17581 gcacgttttt cgctatcgct cagaaaggcg atttccagac cgttaatctg cgcctggcga
    17641 atctgttcgc ggctcaatcc tgccgctggc gcggcgacgt gatattcatg gataatatct
    17701 acgccctgaa cagccggatc gtccgtatta agactggcga gaacgccatg ctcaaggaag
    17761 gtttttagtg gatgatccgc cagcgatgcg acggtactgg tctgaatatt cgaggtcaga
    17821 caggattcaa taccgatacg ctgctgtgca agaaaatcca ttaacgcgcg atcttcgaca
    17881 gcttttacgc catgtccgat acgctcggcc cccagttcgc gaatcgtctg ccagatactt
    17941 tccggccctg cggcttcgcc agcgtgaacg gtaatatgcc agcccgcatc gcgcgcccga
    18001 ttaaagtgcg acaaaaacag actgccggga aagccaagct catcaccggc taaatccagc
    18061 gcggtgattt tctctctgtg cgccagcagc gcatcaagct cctgtaaaca tgccgcctcg
    18121 ccgaaggtac ggctcataat gccaatgagt cgtgcctcga cgccaaacgt gttacagccg
    18181 tcgcgtacac cgtcgataac ggcttcaacc acgcctgcga tcggtaactg atgcgccatc
    18241 gccatatagc cgggcgaaaa gcgaagctcg acgtaatgca ggccgttacg tgccgcatct
    18301 tcaatatttt caaaggccac acggcggcag gcgtcaagcg atgccaggac ttttaccccc
    18361 caatcgagtt tagtgagaaa gcttactaaa tcgggttcgg ttgaggtgac ctggacatgc
    18421 ggaatcagcg tttccagcgt ttgggcggga agggcgatgt tgaactgccg accaagatcc
    18481 agaattgttt gggcgcgaat gttgccatca aggtggcggt ggatgtcagt caaaggaagc
    18541 gtaatatcaa tcatgggcgc actcaatttt taataaaagt gcgcaccatt atactacaga
    18601 ttgataatgc tctggaaatt ttgcaaaaac ggagtcatta cgttgcaact tcgcgagagc
    18661 gcgggagaaa ttttgtatca ttctctgtaa cgcgcccccg gtcagctcac gggggttgtc
    18721 tctgttatcg cctctcagga taaagggtca accccccgct tgtagacggt atcagcgaac
    18781 ggcgcggtgg caaaatccat atccgagatc gtaaagggga gcagatcggc ttcgccaaaa
    18841 cgatcggcga cataatccca ctacgtacac catgtcccgc gtcggtcaac ttcctgtgaa
    18901 aaatcgaaca tatcccttcc ttatgcctga acggtattca tcaggccaac catttcatct
    18961 tttaccgact gaacctgcgg gccgataatt acctgcaaat tatgctgatt gagctgtacg
    19021 atgcctgtcg cgtgattgtc cttcaatgcc tggacatcga caaacgacat atctttcact
    19081 gacaggcgta gggggggatg cagttgtcca gactcacgat gttttccgtg ccgcctaatg
    19141 ctcacgacga gcaccatgtg cggagtcaaa cgatagccgc tcgcctggta acgcaaaagt
    19201 agaggctgcg cgtcgttcgg cgcagaccgg gtgcagcgtc gcgacacccg gcaaggcgat
    19261 tattgttgag gcagcgccgg aacgtccgga acggaaagcg ccggcatccc aaataggccg
    19321 acaaagtctt ccaacggcat tttttgtccg ttgagcgtga tctggccatt ggcgtactgc
    19381 aaactggagg cgatagtatt atccttcagc gttgtcagtc ggaacatctg acccattgcg
    19441 gacagcccct gcacctgctg ttttgccagt ttttccgcat catcctgctg atagccttcc
    19501 agttttgcta tctgcgtcat aaactcgacc gccatgtcca tcggaattgc cagtttcgca
    19561 tccagcgatt tcacggagcg gtcgacttcc tgtgccagcg tttgcggttg tgccgttgtg
    19621 gttgccggat ctttgaggaa cagcgacaga ttcagcgtgg tttccccttt ggcgtttttc
    19681 cagctaagcg gcgccagggt cagaaccgga tcgcctttta acagcacggg gagagcgcta
    19741 aagaacgctt cagtgacttt ttgctgataa agctcaggat tctgcgccac gtccggctga
    19801 ttcagcagcg cctgcgtttg cgcatgatat tgctgactaa actggtgcca ggcttcgccg
    19861 tcgatttgac cgactttcag cgttaattta ccgctgccca aatcctgatt ctgcactttc
    19921 aggctgttaa gcgagtaatc caactggctg ttaatggttt ttccgtcgtt gacgagatcg
    19981 gacttgccgg caatttccat cccttccagc accgccatct ctttaccctc aatggcgatg
    20041 gacagtttat ccagcgttaa cttttggtcg cctacacgct cgccaaagct tgccagctta
    20101 ctggtaccgt ctgttttcaa attattaaag gtgagttgta ccttctgatt atattcgtta
    20161 acggcatcga ccaggccgct ctgcgcttcg cccgacagcg aaaccacatt accgtcttta
    20221 tcggcgttaa gctggaactc gccgccgcta aaggcgacct tttcaccggc attctcgtag
    20281 tttaacggct tgagagagat atcggagcgg gtatcgccgc cataaccaat gcgggtattg
    20341 ataacaaagg gcgcgtcgcc tttcgcaata tcaaagaggg gttttgccgc atcgttattc
    20401 accagagtgg tttttaccga cgccatagaa gggatcagat tgagcgtttt gagctgggcg
    20461 agcgggaagg ggccatgtga aacggactcg tccagcacaa tgctttgccc gggcttcaac
    20521 caggtattgt ctgcgccggc aaccggtttg acaaccagtt gcagatggct actgaacacg
    20581 ccgcgctggt agttttgata acttaattcg acaccggcct ccggcgcagt acgcttgagc
    20641 tgttcattgg cctgagtcac catttctgca agatggttct ccagcttttt ccccgtatac
    20701 caggcgccgc ctgtccagac gatgccaagt gcaattacta cacctgcagc taccagtgtt
    20761 tttttcatat caattgtcca taaaaatgaa accaggcgga ttaaaccgcc tggaggagtt
    20821 ttacgtctgt tataagctta gcaagagttg ttaaaaaatt cagtacgttg ctacagcttg
    20881 ttataaacac gcgctaaacg gcccgtgccg ctggcgttaa ccggagactc atccgcgccg
    20941 ataaaggcag attcacccgg cttcagtacc agacgctgtt catctttacg taacaccgcc
    21001 tcaccctcaa cgcagaacag aatcgcggcg ctgtgttggc cgatgctcgt ctcctgaagc
    21061 gccaggtcgt gcagtgaaaa agcaaaatcg tcaaccggaa ttgggaagtc cagctccgcg
    21121 ccgcttttca ccggggcagt cagcaactcg ccggcaggct taggttcgaa cttcacgttc
    21181 gcgaccagct cagggatgtc gatatatttt ggcgtaaggc cagcgcgcag aacgttatcg
    21241 gagttcgcca tgacttccag cgcaacgccc tgcagataag catgaggcgt ttcggcaaac
    21301 aggaacatcg cctcgccggg attcagtttg accacattca gcaacaaagg agagaaaagc
    21361 ccgctgtcgt caggataata ctctgaaatc acgcggatcg tttgccacgg ttcgccttgc
    21421 tggctgttaa gcgccgcttt gagtacggct aacgcgcggg atttttcttc gccttgcata
    21481 ttcaacaggc tggcgaaaag ctggctcaga cgttcagcat tcggcgcctg caaaaagtgg
    21541 gcgatagcgg aatgcgcgcc ggcgacaggt tgcagtaaag agacaatgtc agaaaattcg
    21601 cggaacgcgt tcatcgccag gaaaggcgcc agggcaaaaa ccagctctgg tttatggtta
    21661 ggatctttat agttccgctc tgcggcatcc atggggatac ccgccgcatt ttctttcgcg
    21721 aaaccgattt cggaattgcg cttattcggg tgcacctgaa tagagagcgg ctgcgcggcg
    21781 cacagtactt taaacagaaa cggcagttcg ccgaaacggt tggctaccgc ttcgcccagc
    21841 atggcggttt tattcttttc gatggcgtca cgcagggaga cggtttcgcc gttggcggtg
    21901 gtgattcgcg agctgctttt gggatgcgcg cccatccaga gttcagccat tggctgctgc
    21961 tgcggattgg cgatgccata aagttccgtt aacgcagttt tacttcccca ggcatagttt
    22021 tgcactgagt taatgagttt ttgcattatc aagccctgtt tcaatgtgga gatcaatggg
    22081 aggtattaaa ccaagaaacc cgcatgaagt aacctccggg cgtaaaaagt cgtacttgtc
    22141 tcagtttttg ttaaaaaatt gtgtaggata gtgtaactcg ctttgagtcg ggcaatggaa
    22201 cacctgccca gagaataacc ataccgagcg gtaagtgaga gcacaatgtc aaacaaaccc
    22261 ttcttttatc aagacccttt tcccctcaaa aaggacgata ccgagtacta cttgttgacc
    22321 agcgaacatg tttccgtcgc cgagttcgaa ggacaagaga tcctgaaagt cgcgccggaa
    22381 gcgctaacgt tgttggcgcg tcaggccttc cacgatgcgt cttttatgct acgtcccgcg
    22441 catcagcagc aggtggcgga tattctgcgc gatccgcagg ccagtgaaaa cgacaaatat
    22501 gtcgcgctgc aattcctgcg aaactccgat atcgcggcca agggcgtgtt gcccacctgc
    22561 caggataccg gtacggccat tattgtcggc aaaaaaggcc aacgcgtctg gactggtgga
    22621 ggtgatgaag cggcgctggc tcgcggcgta tataacacct atatcgaaga taacctgcgc
    22681 tattcgcaga acgcggcgct ggatatgtac aaagaggtca ataccggtac taacctgccg
    22741 gcgcagatcg atctctacag cgtcgatggc gatgaatata aattcctctg tatcgctaaa
    22801 ggcggcggtt cggcgaataa aacctacctc tatcaggaga caaaagcgct actgacgccg
    22861 ggtaagctca aaaattatct cgtcgataag atgcgtacgc tgggcaccgc cgcctgtccg
    22921 ccgtatcaca ttgcgtttgt cattggcggt acctcggcgg aagcgaacct gaagaccgtt
    22981 aagctggcct cggcaaaata ctatgatgcg ctaccgaccg aaggcaatga acacgggcag
    23041 gccttccgcg atattgagct ggaaaaagaa ttgttgcttg aggcgcaaaa tcttggctta
    23101 ggcgcgcagt tcggcggcaa atatttcgct cacgatattc gtgtcatccg attgccgcgc
    23161 catggggcat cgtgtccggt aggtatgggc gtgtcctgct ccgcggatcg aaacattaaa
    23221 gcgaagatca accgggaagg gttctggatc gagaagctgg agcgcaatcc cggtaaatat
    23281 attccagagg cgctgcgcca ggcgggagag ggcgaggcgg tgcgcgttga tcttaaccgt
    23341 cccatgagcg agatactgca acaactgtcg cagtatccgg tatcaacgcg cttgtcgctg
    23401 aacggcacga ttattgtggg ccgcgatatc gcgcacgcta aactgaaaga acggatggac
    23461 agaggcgaag gtttgccgca gtacatcaaa gatcatccta tctattatgc ggggccggca
    23521 aaaacgccgg aagggtacgc ctccgggtcg cttgggccga ctaccgcagg acggatggac
    23581 tcttatgttg atcagctcca gtcgcagggc ggcagtatga tcatgctggc gaaaggcaac
    23641 cgcagccagc aggtgaccga tgcctgtaag aaacatggcg gcttctacct gggcagtatc
    23701 ggcggcccgg cagccgttct ggcgcagggc agtatcaagc gcctggagtg tgtggaatat
    23761 cctgaactgg gtatggaggc tatctggaaa attgaagtgg aggattttcc ggcctttatt
    23821 ctggtggatg ataaaggtaa cgatttcttc cagcagattc agtcatcgca gtgcgcgcgc
    23881 tgcgttaagt aatgtcgccg ccctgcgggg cggtaacatg attcgctatt ttgccggaga
    23941 acggcgcaag cgccttatcc ggtctacacc gttgtgttgt tatcgttaat actcataaga
    24001 ccgcaaacat gtgagcaatg tcgacacatg atctcatcaa cttgagtaag gagcaggtaa
    24061 tggtaacggt acgccgcgag aaagattcaa tgggcgtgat tgaagtcccg gcagataaac
    24121 tgtggggggc gcaaacgcaa cgttcgctgg agcattttcg gatttccacg gagaaaatgc
    24181 ccgtctcgct cattcacgct ctggcgttga ccaagcgcgc cgctgcgaag gtcaaccagg
    24241 acttagggtt gttggcggcg gaaaaagcca gcgcgattat cgaggcagct gatgaagtgc
    24301 tggcgggaaa acatgctgat gagtttccgc tggcgatttg gcagaccggg tccggtacgc
    24361 aaagcaacat gaatatgaat gaagtgttag cgaaccgcgc cagtgaaatt ttgggcggcg
    24421 ttcgcggtat ggaacgcaaa gtgcatccca atgatgacgt caataagagt caaagctcaa
    24481 acgatgtgtt cccaaccgcc atgcacgtgg cggcgttact ggcgttacgc gaacacctta
    24541 tcccgcaatt atccgcatta acggatacgc ttcgcgataa atcccacgct ttcgccgata
    24601 ttgtcaaaat tgggcgtact cacctgcagg acgcgacgcc gctcacctta ggccaggaga
    24661 tttccggttg ggtagccatg ctggaacata acctcagaca cattgagcac agtttaccgc
    24721 acgtcgcgga actggcgctc ggcggaaccg cagtagggac agggcttaat acccacccgg
    24781 aatatgcccg gcgcgtggcc gaggaactgg cgaccattac cgcggcgccg tttgttaccg
    24841 ccccgaataa attcgaagcg ctggcgacct gtgacgcgtt ggtacaggcg catggcgcat
    24901 taaaaggact ggcggcctcg ctgatgaaaa tcgccaacga tgttcgctgg ctggcatccg
    24961 gcccgcgctg cggcattggc gagattgcta tcccggagaa tgagccaggc agttccatta
    25021 tgcctggtaa agtgaacccg acccagtgtg aagcggtaac gatgctatgt tgccaggtaa
    25081 tgggtaacga tgtggccatc aatatggggg gcgcatcggg caactttgag ctcaacgtct
    25141 atcgtccgat ggttattcat aattttctgc aaacggtgcg cctgctggcc gatggcatgg
    25201 cgagtttcaa tcaacactgt gcgtcaggaa tcgagccaaa ccgcgagcgt attacgcagt
    25261 tgctgaatga gtcgctgatg ctggtcactg cgctcaatac gcacatcggt tacgataaag
    25321 cggcggagat tgcgaagaag gcgcataaag aagggctgac gctcaaagcc tcagccgtgg
    25381 cattaggata ccttagcgac gcggagttcg acgcctgggt acgtccggag ttaatggttg
    25441 gcagtatgac gccgggacgt taatccgcca catacaggtg cagtcgcgga ataatcagtc
    25501 gcagcggctg cgcctgtggt ttaaaacggt gctgaatatt atcggcgtca tagttttcca
    25561 gcccgccaat atccggcacg ccagcgccgt tgtccgtgtt gattaatgcg ataatcggcg
    25621 aggggcaggc gtgttgcacc tgtttctgct ggcctttata ccagatgcgg gcgatcggct
    25681 gtaccttaac cgggcgctta atcttgagtt tggcctgctg cggtaaggca gcgatatcct
    25741 gatattcccg ttccagcttg aattgccatt gttcgcgcgt ccacggcggg acgctgcgcg
    25801 gcgacgcgag gctttttttc aactggctca gaacctcatc ccggcttaaa tttttaataa
    25861 tatgtttatt tgcccaaccg aaacgtatgg tggcggggtt attgataagc gtcagcgtgc
    25921 ggtaagcgtt cagcgtaatt aagccgggta gatgccgatg cacccactca aaacgtgccg
    25981 ctgagggaag accggactct accgtaacca tctgctcgaa ggtggttttc aactggttaa
    26041 tgcgctgtac ctgattttcc agatctaact gtgtcgcatt atccacttga tagcataaaa
    26101 cgccaggcag gcggacggcg gctttactgc tgcggttttc ggactgctgt tgaataaaca
    26161 aatggcgata gtgacgtagc gccagcgctt cggcctcttt ccccagatgt tgcgtgacct
    26221 cgatagtgtc cagcggcgca tgttccgcct ctttggtcac ctgcggcagt gaaaagacac
    26281 tagcgataag tagcgaatgc tgctgtagat tatccgacag cgccgccagg tgttgttcta
    26341 tctggcgaaa agtgccattc aggcgttcaa cgagatcgta gcgggacatg gtatcactca
    26401 ctttagttac aacatactat ctgtatagca caattcccgc ggctcaacca gcgtgcaaaa
    26461 tacgtcaggc cgcggtcatg tcgggcatcg cgtgccagac cggccagcga aagctaaatt
    26521 ttgcgccgcc cagttcgcta tcgtcacaga cgacgctacc gcccatcgcc agagcgatag
    26581 agtgtacgat ggcgagtcca agcccgcagc cgcctgtcgc ccggtctcta ctggggtcga
    26641 gtctgacaaa aggttcaaat acgcgctctc gcgcatccgc ttcaatgccg gggccatcat
    26701 cttcgactat cagcgttgcc tgactgccgt caagtaacag actgacctga acggtggtac
    26761 ggctgtagcg caacgcatta ttcagcaggt tatccagcac tcgcgacatt aaccgcatat
    26821 caagcgcgcc ataatcgccg attacacatg tgagaagatt tacggcgcgt tccgggttca
    26881 cgctctgcac atcctgcaaa tgcgcgaaca accaggcggg gaggtcgggt ttggtcaaca
    26941 tcagttcatt ttgtggtcgg tcaaggcgcg cataggtgag cagttcttca atcagcgctt
    27001 ccagttgacc aatatcgcga ttgagcgcct gtgattccgg cggagtcaga ttttcactca
    27061 tttcaagccg atagcgtaaa cgtaccagcg gcgtgcgaag ctcatgggcg ataccgtcaa
    27121 tcagctgttt tttactggcg atcagagcat taatgttatc cgccatctgg ttgaacgcga
    27181 cgcccagacg ttcgaaactg gaaccattat cgaaatgcag gcgttcagtc aaatgaccct
    27241 cgccaaagcg ctgcgcggcg gattcgagcc tgagcatttc ttgccagtgc gggcgcatcc
    27301 agataaacac aggaaaggcg agagaaaagg caatgagcgc cattaaggcg atatccagca
    27361 gtcgcatttg atgcaggaaa tagagatagg gaaccgggcc aaccgccagg acgtaatggc
    27421 tgcgcgggat acgctgaata aaggtgtatt gatcgtcaag cgcgacaata tcgccttcac
    27481 gcagtcgctg cgtggtggcg gcatcaagct tatagtgatt taacggttca acgcgtaaat
    27541 cgaaagagag gttcaggtcc atctctttta acgttttccc ccattcacgc ggcggaattt
    27601 cccgcagttc gctgcgcatc agatagagcg aacttttcat cagatcgtcg agcgattgcc
    27661 tgcccgcgcg ttcggcagtg aatttgtaca ccagtccgac caataaggtc atgaccagaa
    27721 aacagacgaa cagcaaaagg taaaactgca caaacagctt tttcatcaac gcccaccgga
    27781 tctcaataca ttagctctat cgcgcgctga cggaaaagat ttcccgtcag cgccgctggt
    27841 gggttataaa agcaggcttt gcgtcaactg acaacctcat tgtccggcgt taaggtccgg
    27901 actttcgtga acaatgcgtc catcgacaag cgtcaaaaca gcgcgaatgg tatcaattct
    27961 gtcttccggc atcgtcataa agggctgatt gagcaccgcc agatcggcct gttttccgac
    28021 gctaagctgg ccccggtgtt gttcggcaaa ggcgagccag gcggcatgac gtgtatataa
    28081 cgctagcgct tccagacgcg tgagccgctc gctggcgggt ttacgcacgg aaccgcctga
    28141 cgctataccg gtgatatgat attcgatagc gtgccagaca ccggcaatgc caatacgcgt
    28201 cgaatcggtg ccgccagcta cgacaagccc tttatccagc gccagtcgaa ccggcggcga
    28261 attgtccgtc gcaccgggtg ggttggcgtc acggatggca agcccctcaa agtaaggccc
    28321 catttgcaca gtgtatgcca gacccagctt acgcattcgc tcaagtgtct gtggcgaacc
    28381 ggtattcaga tgcgcaatag accagcggag agggcgcaga tcgtactgct gcgctacctg
    28441 ctcaaaaatc gtcaatatcg cgtcggcgct gtcatcggta taggcgtgga tctcaagcgg
    28501 tattccccgt tttgccgcaa acgtcgcgac ctggcgaagc gcggttttgt cctgctctga
    28561 ggaagaaaac cctggggcca tccgcacgcc gtcattcatt cctgccacca ggctttcccc
    28621 caggccaaga aaagccagtt gcccgtcgtc ggcacgcgcc gggcgaaagg ccatcaggtt
    28681 gctgaaccac tgcgcttcat gacctttcgc ttccggctgt accggaatgc gataccccac
    28741 gcgcagcggt aaatccccct ggtttcgcat tgcaaataaa ggctcataag cggcggcagg
    28801 cccggcagag gggtcaatga tgccggtcac gccgcgagcg ttcatatcag cgaaaaattg
    28861 tcgcagaccg ccctcgcgat cggcgttact acttatgctg gcaaaaagct ggttaaacgc
    28921 ggcgatgtca ccaaataatt tccccgtggc gctacctttt gcgtcgcgct ctacgcggat
    28981 tcccgctaaa tcaggaggag gggtgtcgtt aaggccaagt acgtctatac cgcgctgatt
    29041 cactaacgca tagtcgtaaa gatactgaat ataagccgga tgatcgggaa gggcgtggct
    29101 cagttcggct accgtcgacg cccggttttc tgcaaattgc gccggtatcc atgatcccac
    29161 tacggctacc cattgatcgt ggggacgacg gttagcgtcg gcgcgtaatt tatccagcgc
    29221 gtctttaagc gaagggctgt cgtaccagta ggtttcgaat gtccaggttt gtccgccgcg
    29281 aatggcgtga atatgggtat cggtcaggcc gggtatcacg gttttaccct gtaaatcgat
    29341 ggtacgggta tggtcgccgc gccattcatt tgtcgccgta tcatcgccaa tcgccacaat
    29401 ccgcgagccg gaaatcgcca gcgcgctggc ctgcggctgg gcatcattca gagtgatgat
    29461 attaccgtta tgcaaaataa tatccgctgc cgggcgggcg gcggtggctg cgcctgtggc
    29521 cgtgagcaga aagagaagcg cggttctgga aagcagaggc gggacgagac tgatcattag
    29581 catgttcctt ttgtcgggag ataagcaaac catagagagc gaacaagaat tgttcaatct
    29641 gtgcccaggg aacagtgcgt tctgttttta gaacggtggt gatagaaaaa gaaaagcccg
    29701 ccgaaacggc gggcttgaga agaattaatg aataattaga actggtaaac catacccagc
    29761 gcgacgatat catcagtgct gataccggca tctttataga acgggtcgtc gtcatccagc
    29821 aggttgattt tataatcaac ataggtggag aagtttttgt tgaaatagta ggtagcacct
    29881 acatcagcat atttaaccag gtctttatca tcgccattaa cgttgttata ggtcagatct
    29941 ttacctttag acatcaggaa agaaaccgcc gggcgcagac cgaaatcaaa ttgatattgg
    30001 gctgtaactt cgaagttttg cgttttgttt gctacgccgc catcataacc cttgtccgtt
    30061 ttaccataag gcgtcatatt acgggtttca gaatacatag tcgctaaata gatgttgttg
    30121 gcatcatatt tcaagccagc tgtccatgca tccgctttgt cgccgccagc aatcgtgccg
    30181 ccagcattga cttgctcatt agtacgatcg gaagtggtat acgcagcgcc tgcgctgaag
    30241 cccatgccaa tatcataggt agtagaaata ccgaagccat caccgttatc gtaacgaata
    30301 tcgtcgccat tattacggtt attggtaccg atatttacat cgtcagcgct ttggctttca
    30361 tttttaccct gatattgcaa cgcgaagttc agaccgtcta ccagaccgaa gaaatcagtg
    30421 ttacggtagg tggccacgcc gttagcacga ccggtcatgt agttgtcagc gtaagtatag
    30481 gagtcgccgc cgaactcagg cagcatatcg gtccagcctt ccacgtcgta caggacgccg
    30541 tagttacgac catagtcgaa tgagccgtag tcgccgaatt tcagaccggc gaatgccaga
    30601 cgagtccagg agttcgcgcc ttcgccttcg gtagtgttag cctgaacgtt atattcccac
    30661 tggccgtaac cggtcagttg gtcgttaatc tgcgtttcgc ctttaaagcc gacacgcata
    30721 taggtctgat cgccatcttt agaagagtca tcagagaaat agtgcaggcc gtctactttc
    30781 ccgtaaaggt ccagtttgtt gccgtctttg ttataaattt cagcggcgtg tgctgcgcca
    30841 gcagccagca gagccgggat gacaagtgcc aatacttttc ttttcatttt tttatcctta
    30901 aaaacttaac ttatttgcaa aagattgaac ttctacagat tcgttgaatc aaaggcatcc
    30961 taatctgaat aatattattt cagcaaatgc taacttttct tatatgttat taattaatac
    31021 aaaagttact atcggaaacg catatattta tggtgaatat gtttgttatt atatattcat
    31081 ggttgtgatt tgtttgattt cacaatttgc gaaaaaagat ggcaatatag cggcggg
//
LOCUS       DAJVSD010000022        31037 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.022, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000022 DAJVSD010000000
VERSION     DAJVSD010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 31037)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31037)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31037
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.022"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..1668
                     /gene="slrP"
                     /locus_tag="OQP62_000871"
     CDS             <1..1668
                     /gene="slrP"
                     /locus_tag="OQP62_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system effector E3
                     ubiquitin transferase SlrP"
                     /protein_id="HCS1720494.1"
                     /translation="QITTLILDNNELKSLPENLQGNIKTLYASSNQLTSIPATLPDTI
                     QKMELSINRITELPERLPSALQSLDLFHNKISSLPENLPEELRYLSVYDNRIRTLPEH
                     LPSGITHLNVQSNSLTALPETLPPGLKNLEAGENALTSLPASLPPELQFLDVSKNQIT
                     VLPETLPPTITTLDVSRNALSNLPENLPAALQIMQASRNRLVRLPESLPRFRGEGPQP
                     TRIIVEHNPFSERTIQNMQRLMSSAGYQGPQVFFAMGDFSIVRVTRPLHQAVQGWLTN
                     LEEEDVNQWRAFETEVNAAAFSMFLDRLSDTQNTRHSDFKEQVSAWLMRLADDSALRE
                     TAFIIAMDATISCEDRVTLAYHQMQEATLVHDAERGAFDSHLAELIMAGREIFRLEQI
                     ESLAREKVKRLFFIDEIEVYLGFQNQLRESLSLTTMTQDMRFYNVSGITESDLDEAEI
                     RIKIAENRDFHKWFALWGPWHKVLERIAPEEWREMMAKRAECIETDEYQSRVNAELEA
                     LGIAGDPDAERMAGMRIMEEINQTLFTEIMENILLKKEVSSLMSAYW"
     gene            complement(1763..2671)
                     /gene="yvcK"
                     /locus_tag="OQP62_000872"
     CDS             complement(1763..2671)
                     /gene="yvcK"
                     /locus_tag="OQP62_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine diphosphate-N-acetylglucosamine-binding
                     protein YvcK"
                     /protein_id="HCS1720495.1"
                     /translation="MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDN
                     GGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLK
                     ALDHLSVRPLEAINLIRNLLKVDAQLIPMSELPVDLMAIDDQGHEIYGEVNIDQLATP
                     PQEIMLTPNVPATREAVQAINDADLILIGPGSFYTSLMPCLLLDELAQALRRTPAPMV
                     YIGNLGRELSLPAASLTLVDKLAMMEQYIGKKVIDTVVVGPRVDVSAVNDRLVIQEVL
                     EASDIPYRHDRQLLHNALEKALQALG"
     regulatory      2936..3080
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            3068..4057
                     /gene="moaA"
                     /locus_tag="OQP62_000873"
     CDS             3068..4057
                     /gene="moaA"
                     /locus_tag="OQP62_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HCS1720496.1"
                     /translation="MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPGGVTNN
                     GFLTVDEIRRVTRAFASLGTEKVRLTGGEPSLRRDFTDIIAAVGENDAIRQIAVTTNG
                     YRLARDAANWREAGLTGVNVSVDSLDARQFHAITGQDKFRQVMAGIDAAFDAGFEKVK
                     VNTVLMRDVNHHQLDTFLAWIQPRPIQLRFIELMETGEGSDLFRKHHISGQVLRDELI
                     KRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSVGKLHLCLF
                     GDGGVSLRDLLQDDAQQYALEERISDALREKKQTHFLHQSNTGITQNLSYIGG"
     gene            4079..4591
                     /gene="moaB"
                     /locus_tag="OQP62_000874"
     CDS             4079..4591
                     /gene="moaB"
                     /locus_tag="OQP62_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein B"
                     /protein_id="HCS1720497.1"
                     /translation="MSQVSAEFIPTRIAILTVSSRRGEEDDTSGHYLRDSAQEAGHEV
                     VAKAIVKENRYAIRAQVSAWIASDEVQVVLITGGTGLTEGDQAPEALLPLFDREVEGF
                     GEVFRMLSFEEIGTATLQSRAVAGVANNTLIFAMPGSTKACRTAWENIIAPQLDARTR
                     PCNFHPHLKK"
     gene            4594..5079
                     /gene="moaC"
                     /locus_tag="OQP62_000875"
     CDS             4594..5079
                     /gene="moaC"
                     /locus_tag="OQP62_000875"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HCS1720498.1"
                     /translation="MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMI
                     VDGKHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEIQLQAEPEHNRVRIESL
                     CRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDIVIGPVRLLAKSGGKSGDFKVDAH
                     D"
     gene            5072..5317
                     /gene="moaD"
                     /locus_tag="OQP62_000876"
     CDS             5072..5317
                     /gene="moaD"
                     /locus_tag="OQP62_000876"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase sulfur carrier subunit"
                     /protein_id="HCS1720499.1"
                     /translation="MIKVLFFAHVRELTGTDALDLPADFSTVESLRQHLATKSDRWAL
                     ALEDGKLLAAVNQTLVSFDHPLTAGDEVAFFPPVTGG"
     gene            5319..5771
                     /gene="moaE"
                     /locus_tag="OQP62_000877"
     CDS             5319..5771
                     /gene="moaE"
                     /locus_tag="OQP62_000877"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase catalytic subunit MoaE"
                     /protein_id="HCS1720500.1"
                     /translation="MHETRIVVGPAPFSVGEEYSWLAARDEDGAVVTFTGKVRNHNLG
                     DSVKALTLEHYPGMTEKALAEIVAKARSRWPLGRVTVIHRVGELWPGDEIVFVGVTSA
                     HRSSAFDAGQFIMDYLKTRAPFWKREATPEGDRWVEARDSDQQLAKRW"
     gene            5819..6524
                     /locus_tag="OQP62_000878"
                     /pseudo
     CDS             5819..6524
                     /locus_tag="OQP62_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459785.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
     gene            6671..7378
                     /locus_tag="OQP62_000879"
     CDS             6671..7378
                     /locus_tag="OQP62_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HCS1720501.1"
                     /translation="MGPLAAIRIRQIAFIPATMLSLTYWYTALGLWCTAGIIWLTLYS
                     HFLITHVQPVVVLWISALLLGLGYGAVTCLSRFGTVVATLIYIAIITLTGVSLAYLFS
                     GGATIFVIVGIMFSLNALFIFYLNISSGLFRPLIFMAVSGIIAAIVVNSLVASSTLVW
                     IVSVLTVLVWTLITALEKSTLHGYARMLYHSEFSSLPRCALFGALTLYLGIINAVVTL
                     CRYIILMILEILLSFRP"
     gene            7568..7810
                     /locus_tag="OQP62_000880"
     CDS             7568..7810
                     /locus_tag="OQP62_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000017217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720502.1"
                     /translation="MSGVIIYRYVLLLAIISVTLATFCTLSSVFMGEFNEVLLLLFSW
                     SLLLFSRLQMNTSFFSAYVYFYRIKRVVLESENASA"
     gene            complement(7813..8775)
                     /locus_tag="OQP62_000881"
     CDS             complement(7813..8775)
                     /locus_tag="OQP62_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0104 family protein"
                     /protein_id="HCS1720503.1"
                     /translation="MAKSHPRWRLAKKVLTWLFFIAVVVLLVVYAKKVDWGDVWTVIR
                     DYNRTALLSAVGLVIVSYLLYGCYDLLGRLYCGHKLAKRQVMLVSFVCYAFNLTLSTW
                     VGGIGMRYRLYSRLGLPGSTITRIFSLSITTNWLGYILLGGIIFTFGVVQLPDHWYID
                     EGTLRILGIVLLLIIAVYLWFCAFAKRRHMTIKGQKLVLPSWKFALAQMAISSANWMA
                     MGAIIWLLMGQDVNYFFVLGVLLVSSIAGVIVHIPAGIGVLEAVFLALLAGEHTSQGT
                     IIAALLAYRVLYYFIPLLLALVCYLILESRAKKLRAKNERAMAK"
     gene            complement(8775..10016)
                     /gene="clsB"
                     /locus_tag="OQP62_000882"
     CDS             complement(8775..10016)
                     /gene="clsB"
                     /locus_tag="OQP62_000882"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase ClsB"
                     /protein_id="HCS1720504.1"
                     /translation="MKCGWREGNQIQLLENGDQFYPAVFEAIAQAQQKIILETFILFE
                     DEVGKKLHAALLKAAQRGVKAEVLLDGYGSPDLSDAFVGELTSAGVIFRYYDPRPRLL
                     GLRTNIFRRMHRKIVVIDDRIAFVGGINYSAEHMSDYGPQAKQDYAVRVEGPVVADIL
                     QFEVENLPGQSPARRWWKRHHQAEENRHPGEAQALFVWRDNEEHRDDIERHYLKMLTQ
                     AKREVIIANAYFFPGYRLLHAMRKAARRGVSVKLIVQGEPDMPIVKVGARLLYNYLVK
                     GGVQVYEYRRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANLIIHDRTFNQTLRD
                     NLQGIIVNDCKQVDESMLPKRTWWNLTKSVLAFHFLRHFPALVGWLPAHTPHLAQVPP
                     PAQPEMETQDRVDPENSGVKP"
     gene            complement(10013..10771)
                     /locus_tag="OQP62_000883"
     CDS             complement(10013..10771)
                     /locus_tag="OQP62_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HCS1720505.1"
                     /translation="MTQHTRNFSFKVLTINTHKGFTAFNKRFILPELRDAVRTVGADI
                     VCLQEVMGAHEVHPLHIENWPDTTHYEFLADTMWSDFAYGRNAVYPEGHHGNAVLSRY
                     PIEHYENRGVSVGGSEKRGVLYCRITPPMLNRPIHVMCVHLGLRESHRQAQLTMLAGW
                     VNALPESEPVLVAGDFNDWRQKAGPPLNAAGLEEIFTRAHGRPARTFPVSMPLLRLDR
                     IYVKNANASSPGALPLRNWRHLSDHAPLSAEIHL"
     gene            10904..11314
                     /locus_tag="OQP62_000884"
     CDS             10904..11314
                     /locus_tag="OQP62_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhQ family protein"
                     /protein_id="HCS1720506.1"
                     /translation="MKWQQRVRVATGLGCWQIMLHLLVVAMLVIGWMSGTLVRVGLGL
                     CVLYGVTVLLMLALQRHHEQRWRDVADVLEELTTTWYFGTALIVLWLLSRVLQNNVLL
                     ALAGLAILAGPAVVSLLAKDKKLHHFASKHRIRR"
     gene            complement(11276..12382)
                     /locus_tag="OQP62_000885"
     CDS             complement(11276..12382)
                     /locus_tag="OQP62_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1720507.1"
                     /translation="MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLE
                     VTNATIAIYNEDNGKHSVELTQRFARAKAFTHVLLLNSPQEIQPTIDTQKALLLVRFP
                     ADFSRNLDTFQPAPMQLILDGRNSNSAQIAANYLQQIVKEYQQTLMDGKPKPNNSELV
                     VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQI
                     FVGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISA
                     LCATQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLK
                     DASLGIVWGSLWPLLVIAATTGSAAYAMFRRKVM"
     gene            complement(12498..13628)
                     /locus_tag="OQP62_000886"
     CDS             complement(12498..13628)
                     /locus_tag="OQP62_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1720508.1"
                     /translation="MSKSLSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFGY
                     GINLDSSKLRVGILLEQQSQEALDFTHAMTGSPYIDATISDNRHELIEKMQAGRIRGL
                     VVIPVDFAQQMARDGDSAPIQVITDGSEPNTANFVQGYVEGIWQIWQQQRAEDRGDTF
                     EPLIDVQTRYWFNPAAISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLST
                     EVTRVELLLCKLIPYYFLGMLAMLLCMLVSVFILGVPYRGSLVILFIITSLFLLSTLG
                     MGLLISTITRNQFNAAQVALNAAFLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFVS
                     TLQSLFLAGNIPVVLGVNVLFLIASAVMFIGLTWLKTKRRLD"
     gene            complement(13621..15357)
                     /locus_tag="OQP62_000887"
     CDS             complement(13621..15357)
                     /locus_tag="OQP62_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1720509.1"
                     /translation="MSEAVITLNGLTKRFAGMDKPAVAPLDCTIHSGYVTGLVGPDGA
                     GKTTLMRMLAGQLKADGGSASVLGFDPIQNDSELHAVLGYMPQKFGLYEDLTVMENLN
                     LYADLRSVTGEIREKTFARLLEFTALGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVL
                     LLDEPGVGVDPISRRELWQMVHELAGDGMLILWSTSYLDEAEQCRDVLLMNEGELLYQ
                     GEPKALTQTMAGRSFLMSSPQENNRKLLQRALRLPQVSDGMIQGRSVRLILKKEATAA
                     DIRQAEGMPEITLNETAPRFEDAFIDLLGGAGTSESPLGSILHTVEGTAGETVIEAQE
                     LTKKFGDFAATDHVNFVVQRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGKALVLDMD
                     LKVSSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKIQRMSEAFGL
                     KSIASHPTDALPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVE
                     KGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQAADEQQADPTMEQAFIT
                     LINDWDKEHTHE"
     gene            complement(15350..16345)
                     /gene="hlyD"
                     /locus_tag="OQP62_000888"
     CDS             complement(15350..16345)
                     /gene="hlyD"
                     /locus_tag="OQP62_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretion protein HlyD"
                     /protein_id="HCS1720510.1"
                     /translation="MKKPVVIGLVIAAIVAVIAGGTWWYQSRQDDGLTLYGNVDIRTV
                     NISFRVGGRLASLNVDEGDTIKAGQVLGELDHAPYENALMQAKAGVSVAQAQYDLMLA
                     GYRDEEIAQAAAAVRQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQAT
                     LKSAQDKLSQYRTGNREQDIAQAKASLEQAKAQLAQAQLDLQDTTLIAPANGTLLTRA
                     VEPGSMLNAGSTVLTLSLTRPVWVRAYVDERNLSQTQPGRDILLYTDGRPDKPYHGKI
                     GFVSPTAEFTPKTVETPDLRTDLVYRLRIIVTDADDALRQGMPVTVKFNDEARHE"
     gene            complement(16345..17019)
                     /gene="cecR"
                     /locus_tag="OQP62_000889"
     CDS             complement(16345..17019)
                     /gene="cecR"
                     /locus_tag="OQP62_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator CecR"
                     /protein_id="HCS1720511.1"
                     /translation="MNIPTTTTKGEQAKSQLIAAALAQFGEYGLHATTRDIAALAGQN
                     IAAITYYFGSKEDLYLACAQWIADFLGEKFRPHAEKAERLFSQPAPDRDAIRELILLA
                     CKNMIMLLTQEDTVNLSKFISREQLSPTSAYQLVHEQVIDPLHTYLTRLVAAYTGCDA
                     NDTRMILHTHALLGEVLAFRLGKETILLRTGWPQFDEEKAELIYQTVTCHIDLILHGL
                     TQRSLD"
     gene            17249..18607
                     /gene="rhlE"
                     /locus_tag="OQP62_000890"
     CDS             17249..18607
                     /gene="rhlE"
                     /locus_tag="OQP62_000890"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlE"
                     /protein_id="HCS1720512.1"
                     /translation="MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMAS
                     AQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL
                     NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADR
                     MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASE
                     QVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH
                     GNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIG
                     RTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQ
                     QRGGGRGRGQNQGGAGRSQQPRRQDSGAAKAKPKPRTGEGKPAGDKARPPRRPRRITP
                     AQ"
     gene            18815..20959
                     /gene="dinG"
                     /locus_tag="OQP62_000891"
                     /pseudo
     CDS             18815..20959
                     /gene="dinG"
                     /locus_tag="OQP62_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459799.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase DinG"
     gene            20989..21963
                     /gene="ybiB"
                     /locus_tag="OQP62_000892"
                     /pseudo
     CDS             20989..21963
                     /gene="ybiB"
                     /locus_tag="OQP62_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459800.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein YbiB"
     gene            complement(22119..22379)
                     /locus_tag="OQP62_000893"
     CDS             complement(22119..22379)
                     /locus_tag="OQP62_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1720513.1"
                     /translation="MKTIKYAVAAIALSTLSFGAFAAEPVSASQTQNLHKIGVVSADG
                     ATTLDGLEAKLAEKAAAAGASAYNITSAVGNDKMSGTAVIYK"
     gene            complement(22664..22930)
                     /locus_tag="OQP62_000894"
     CDS             complement(22664..22930)
                     /locus_tag="OQP62_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DksA/TraR family C4-type zinc finger protein"
                     /protein_id="HCS1720514.1"
                     /translation="MASGWANDDAVNEQINNTIEDAVARARGELPHGESRDECESCGD
                     PIPEARRKAVPGVRLCISCQQEKDLHNATFSGYNRRGSKDSQLR"
     gene            23135..24056
                     /gene="rlmF"
                     /locus_tag="OQP62_000895"
                     /pseudo
     CDS             23135..24056
                     /gene="rlmF"
                     /locus_tag="OQP62_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459803.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(1618)-N(6))-methyltransferase
                     RlmF"
     gene            complement(24053..26275)
                     /gene="ybiO"
                     /locus_tag="OQP62_000896"
     CDS             complement(24053..26275)
                     /gene="ybiO"
                     /locus_tag="OQP62_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel protein"
                     /protein_id="HCS1720515.1"
                     /translation="MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKK
                     AAYAALADVLENEASRNELIAQLREASTTPPTEPAPALAPPAAKDEKTVLENVTTVTR
                     QYGDAFATRFAQLYRNITDAPYKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPL
                     YRKMGLWARKKNRERSNWLQLPAMIAGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIA
                     FQQSLFLNAFALIEFFKAILRLIFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYG
                     LIVAVPIISNQVNVQVGAMANVAIMLCITIWALYLIFKNKAEITQHLLSLAERSLAFF
                     SLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFISGMF
                     TRWIAKTITLSPHTQRNYPELQKRLNGWLSSALKVARFLTVCVAVMLLLNAWGLFDFW
                     HWLHYGAGEKMVDILIRIALILFFSAVGWTILASLIENRLASDIHSRPLPSARTRTLL
                     TLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFI
                     QFENGMNTGDLVTIGPLMGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGIGS
                     VVANYDVDRHEDADKANQALKDAVTALMETEDIRGLIIGEPTFAGIVGLTNTAFTLRV
                     SFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQVLPAPAGGPPPDSLPPREPTI
                     "
     gene            complement(26394..27116)
                     /gene="glnQ"
                     /locus_tag="OQP62_000897"
     CDS             complement(26394..27116)
                     /gene="glnQ"
                     /locus_tag="OQP62_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000569103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter ATP-binding protein
                     GlnQ"
                     /protein_id="HCS1720516.1"
                     /translation="MIEFKNVSKHFGPTQVLHNIDLNIRQGEVVVIIGPSGSGKSTLL
                     RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP
                     LRVRGVKKEEAEKQAKALLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLF
                     DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG
                     SPQALIENPPSPRLQEFLQHVS"
     gene            complement(27113..27772)
                     /gene="glnP"
                     /locus_tag="OQP62_000898"
     CDS             complement(27113..27772)
                     /gene="glnP"
                     /locus_tag="OQP62_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015367581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter permease GlnP"
                     /protein_id="HCS1720517.1"
                     /translation="MQFDWSAIWPAIPLLLEGAKMTLWISVLGLAGGLVIGLAAGFAR
                     TFGGWFANHIALVFIEIIRGTPIVVQVMFIYFALPMAFNDLRIDPFSAAVVTIMINSG
                     AYIAEITRGAVLSIHKGFREAGLALGLSRRETIRHVILPLALRRMLPPLGNQWIISIK
                     DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKI
                     L"
     gene            complement(27918..28664)
                     /gene="glnH"
                     /locus_tag="OQP62_000899"
     CDS             complement(27918..28664)
                     /gene="glnH"
                     /locus_tag="OQP62_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter substrate-binding
                     protein GlnH"
                     /protein_id="HCS1720518.1"
                     /translation="MKSLLKVSLAALTLAFAVSSHAADKKLVVATDTAFVPFEFKQGD
                     KYVGFDVDLWDAIAKELKLDYTLKPMDFSGIIPALQTKNIDLALAGITITDERKKAID
                     FSDGYYKSGLLVMVKANNNDIKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPN
                     IDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGESLEAQQYGVAFPKGSDEL
                     REKVNGALKTLRENGTYNEIYKKWFGTEPK"
     gene            complement(29141..29644)
                     /gene="dps"
                     /locus_tag="OQP62_000900"
                     /gene_synonym="pexB"
     CDS             complement(29141..29644)
                     /gene="dps"
                     /locus_tag="OQP62_000900"
                     /gene_synonym="pexB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001730644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein Dps"
                     /protein_id="HCS1720519.1"
                     /translation="MSTAKLVKTKASNLLYTRNDVSESDKKATVELLNRQVIQFIDLS
                     LITKQAHWNMRGANFIAVHEMLDGFRTALTDHLDTMAERAVQLGGVALGTTQVINSKT
                     PLKSYPLDIHNVQDHLKELADRYAVVANDVRKAIGEAKDEDTADIFTAASRDLDKFLW
                     FIESNIE"
     gene            complement(29947..30834)
                     /gene="rhtA"
                     /locus_tag="OQP62_000901"
     CDS             complement(29947..30834)
                     /gene="rhtA"
                     /locus_tag="OQP62_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/homoserine exporter RhtA"
                     /protein_id="HCS1720520.1"
                     /translation="MPGSTRKLPVWLPILVLLIAMSSIQSGASLAKSLFPLVGAPGVT
                     ALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGLSLGGMNYLFYLSIQTVPLGIAVA
                     LEFTGPLAVALFSSRRPVDFIWVVLAVLGLWFLLPLGQDMSHVDLTGAALALGAGACW
                     AVYILTGQRAGAEHGPATVAVGSLITAIIFVPIGAVQAGDALWHWSILPLGLAVAVLS
                     TALPYSLEMIALTRLPTRTFGTLMSMEPVLAAISGMIFLGETLTGIQILALCAIIAAS
                     MGSTLTIRREPQIKQVDVK"
BASE COUNT         7477 a         7979 c         8350 g         7231 t
ORIGIN      
        1 cagataacta ctctgatact cgataacaat gaactgaaaa gtttgccgga aaatttacag
       61 ggaaatataa agaccctgta tgccagcagt aatcagctaa ccagtatccc tgccacgtta
      121 ccggatacca tacagaaaat ggagctgagc attaaccgta ttactgaatt gccggaacgt
      181 ttgccttcag cgcttcaatc gctggatctt tttcataata aaattagttc cttacctgaa
      241 aatctacctg aggaacttcg gtacctgagc gtttatgata accgcataag gacactgcca
      301 gaacatcttc cgtcagggat tacccatttg aatgtgcaga gtaattcgtt aaccgctctg
      361 cctgaaacat tgccgccggg cctgaagaat ctggaggccg gcgaaaatgc tttaaccagt
      421 ctgcccgcat cgttaccacc agaattacag ttcctggatg taagtaaaaa tcagattact
      481 gttctgcctg aaacactacc tcccacgata acaacgctgg acgtttcccg taacgcattg
      541 agtaatctac cggaaaacct cccggcggca ttacaaataa tgcaggcctc tcgcaatcgc
      601 ctggtccgtc tcccagagtc gttaccccgt tttcgtggtg aaggacctca acctacaaga
      661 ataatcgtag aacataatcc tttttcagaa cgaacaatac agaatatgca gcggctaatg
      721 tcctctgcgg gttatcaggg accccaggta ttttttgcca tgggcgactt ttcaattgtt
      781 cgggtaactc gaccactgca tcaagctgtc caggggtggc taaccaatct cgaggaggaa
      841 gacgtcaacc aatggcgggc gtttgagacg gaagtaaacg cggcagcctt cagcatgttt
      901 ctggatcgtc ttagcgatac gcagaacacc cgacattcgg attttaagga acaagtctcc
      961 gcctggctaa tgcgcctggc tgatgatagc gcactaagag aaaccgcatt tattatagcg
     1021 atggatgcaa cgataagctg tgaagatcgg gtcacactgg cataccatca aatgcaggaa
     1081 gcgacgttgg ttcatgatgc tgaaagaggc gcctttgata gccacttagc ggaactgatt
     1141 atggcggggc gtgaaatctt tcggctggag caaatagaat cgctcgccag agaaaaggta
     1201 aaacggctgt tttttattga cgaaatcgaa gtatatctgg gttttcagaa tcagttacga
     1261 gagtcgctgt cgctgacaac aatgacccag gatatgcgat tttataacgt ttcgggtatc
     1321 actgagtctg acctggacga ggcggaaata aggataaaaa ttgctgaaaa tagggatttt
     1381 cacaaatggt ttgcgctgtg ggggccgtgg cataaagtgc tggagcgtat agcgccagaa
     1441 gagtggcgtg aaatgatggc caaaagggct gagtgtattg aaacggatga gtatcagagc
     1501 cgggtcaatg ctgaactgga agcgttagga atagcaggtg atcctgacgc agagcgcatg
     1561 gctggaatgc ggataatgga agagatcaat cagaccctct ttactgagat catggagaat
     1621 atattgctga aaaaagaggt gagctcgctc atgagcgcct actggtgata gctgaacgca
     1681 gtttatcaga agagggagag agcctgttta cccttcggtg taaacaggct tctgataagc
     1741 gcagcgtcgt cggtaaacgg gcttaaccca acgcctgtag cgctttttcc agcgcattgt
     1801 gtaataactg acgatcgtgg cgatagggga tatcgctggc ctccagcact tcctgaatca
     1861 ccagccgatc gttcaccgca ctgacgtcaa ctcgcggccc aaccactact gtgtcaatga
     1921 cttttttgcc aatatattgc tccatcatcg ccagcttatc gaccagcgtt aaactggcgg
     1981 cgggcagact cagttcgcga cccagattgc cgatatacac cattggcgct ggggtgcgcc
     2041 gcagcgcctg cgccagttca tccagcagca ggcaaggcat caggctggta taaaaactgc
     2101 cagggccaat cagaatcaga tccgcgtcat taatggcctg taccgcttcc cgcgtcgccg
     2161 gaacgtttgg cgttaacatg atctcctgcg gcggcgtcgc taactgatcg atattcacct
     2221 cgccataaat ctcatgcccc tgatcgtcaa tcgccatcag atctaccggt agctccgaca
     2281 tcgggatcag ctgcgcgtcc actttaagca gattacgaat taaattaatc gcttccagag
     2341 gccgcacgct caggtgatct aacgccttta acatcaaatt tccgaggtta tgaccagaaa
     2401 gttcgccatt accgccaaaa cggtactcaa acatagcgga tgcgacgctg ggttcggtaa
     2461 ttaactgatt cagacagttg cgcatatcgc cccaggcgat cccgccttcc gagcggcgaa
     2521 tacggccagt tgaccccccg ttatctgtgg tagtcacaat gccggtcagg cgcgaaccta
     2581 atgaagaaag cgaggagagg acgcgtccta atccatgccc tccgccgagg gcaacgacac
     2641 gatcaaggtc agccagcgta cgattgcgca taaaaattcc tgaagtcaaa taagcagcgc
     2701 tacagtagcg caagtcgcgg gttttcagca attagccgac cggctaaaag acaattaatt
     2761 attcccgact acccctttat agcgagggcg ttaccacggc taaatgatat atatcaatgt
     2821 aaaagtgtga ttttcacgta ttctgtcgct aaatagcacg atcatatcgc tatgtatatg
     2881 tttatatagc gaaagcgtga tggcgaaatt gtcatttaca cgctagtatc ggcgtaacca
     2941 caataaacac tctagcctct gcacctgggt catttttgat atggtgcttt ggccgtgaca
     3001 acgtttaacg tttgccacca gggcgcagga agaaatgact ccgcctcccg tatttggaaa
     3061 ggtgtacatg gcttcacaac ttaccgatgc tttcgcgcgt aagttttact acttgcgttt
     3121 gtcgattacc gatgtgtgta actttcgttg cacctactgt ctgccggatg gctacaaacc
     3181 tggcggcgtc actaacaacg gtttccttac cgtcgatgaa attcgtcgcg ttacgcgcgc
     3241 ttttgccagt cttggcacgg aaaaggtgcg tcttaccggc ggcgagcctt cattacgccg
     3301 cgattttacc gacatcattg ccgccgtggg tgaaaatgat gctattcgcc agatcgcggt
     3361 gaccactaac ggttatcgac tggcgcgcga tgccgcgaac tggcgcgaag cggggctgac
     3421 gggcgtcaat gttagcgtgg atagtctgga tgcgcgtcag ttccatgcga ttaccggtca
     3481 ggacaaattc cgccaggtga tggcgggcat cgatgccgcc tttgacgccg gtttcgaaaa
     3541 ggtgaaagtc aacaccgtgc tgatgcgcga cgtgaatcac catcagttgg ataccttcct
     3601 tgcctggatt cagcctcgcc ccattcagct acgcttcatt gaacttatgg agacgggcga
     3661 ggggagcgat ctcttccgca aacatcatat ttcgggtcag gtattacgtg acgagctgat
     3721 taagcgcggt tggatccacc agctccgcca gcgtagcgat ggtccggcgc aggttttttg
     3781 tcaccccgat tacgccggtg agatcggtct cattatgccg tacgaaaaag atttctgcgc
     3841 cacctgtaac cgcctgcgtg tttcgtccgt cggtaagctg catttatgtc tgtttggcga
     3901 cggcggcgtg agtttacgcg acctgttaca ggatgatgcg cagcaatacg cgcttgagga
     3961 acgtatttcc gacgcgttgc gggagaaaaa gcagacccat ttccttcacc agagcaatac
     4021 tggtattacg caaaatttat cttacattgg cggttaatcc ttaataagga gatttcagat
     4081 gagtcaggtc agcgctgaat ttatcccgac ccgcatcgct attcttactg tttccagccg
     4141 acgcggcgaa gaagacgaca cctccggtca ttatctgcgt gattcggcgc aggaggccgg
     4201 gcatgaagtg gtggcgaaag ccatcgttaa agagaaccgt tacgcgattc gcgcccaggt
     4261 ttccgcctgg atcgccagtg atgaggtgca ggtcgtattg ataactggcg ggaccggttt
     4321 gaccgaaggc gatcaggcgc cggaagcgct gttgccgctg ttcgatcgtg aagtggaagg
     4381 atttggcgaa gtgtttcgca tgctctcgtt tgaagagatc ggcaccgcaa ctctgcagtc
     4441 gcgcgcggta gctggcgtgg cgaataacac cttgattttc gccatgccgg gctccacaaa
     4501 agcgtgcaga accgcatggg agaatatcat tgcgccgcag ctggatgccc gtacacgccc
     4561 atgtaatttt caccctcatt taaagaaata acgatgtcgc aattaaccca tataaacgcc
     4621 gcaggcgaag cgcacatggt ggacgtttcc gcgaaagcgg aaaccgttcg tgaagcacgg
     4681 gcggaagcat tcgttaccat gcgtagtgaa acgctggcga tgattgttga tggcaaacac
     4741 cacaagggcg atgttttcgc gactgcccgt attgccggta ttcaggccgc taaacgcacc
     4801 tgggagctga tcccgctgtg ccacccgcta ctgctaagta aagtggagat tcagcttcag
     4861 gccgagccgg agcataaccg tgtacgtatt gagtctctgt gccgtctgac cggtaaaacc
     4921 ggcgtcgaaa tggaagcatt aaccgcggcg tccgtcgcgg cgttaaccat ctacgacatg
     4981 tgcaaagcgg tacaaaaaga tatagtaatt ggtccggtgc gtctgctggc gaaaagcggc
     5041 ggcaaatcgg gggattttaa ggtggatgcg catgattaaa gtgcttttct tcgcccacgt
     5101 tcgcgagctt acaggaactg atgcgctgga tcttccagca gatttttcca ccgttgagtc
     5161 gctgcgacag catctggcga caaagagcga tcgttgggcg ctggcgctgg aagacggcaa
     5221 gctgttggcg gcggtcaacc agacgctggt aagttttgac catccgctga cggcgggcga
     5281 tgaagtggcg tttttcccgc cagtcacggg gggctaacat gcacgaaacg cgaattgtag
     5341 tcggccctgc gccgtttagc gtcggggagg aatattcctg gctggcggcg cgcgacgaag
     5401 acggcgcggt cgtcaccttt accggaaaag tgcgcaatca taacctgggc gatagcgtta
     5461 aggcgctgac gctggagcat tatcccggca tgactgagaa agctctggcg gagatcgtcg
     5521 cgaaggcgcg ttcccgctgg ccgctggggc gggtcacggt gattcatcgc gttggcgaat
     5581 tatggccggg cgatgagatt gtgtttgtcg gcgtcaccag cgcgcaccgc agtagcgcgt
     5641 tcgacgccgg tcagttcatt atggattatc tgaaaacccg tgcgccgttc tggaagcgtg
     5701 aagccacgcc ggaaggcgat cgctgggtcg aagcgcgcga cagcgaccag cagttggcga
     5761 aacgttggta gcagaatgtg atacgcttta gggtatcatt tccacacagg agttcatcat
     5821 ggacagattt ccacgatctg attcaatagt gcaggcgcgg tctggcctgc agacctatat
     5881 ggcgcaagtg tatggctgga tgacggtcgg actgttactg accgcgttta tcgcgtggta
     5941 tgcggctaat acgccagccg tcatgatgtt tgtcttttcc agtaagatca ccttctttgg
     6001 cttaatcatt gctcagcttg cgctggtgtt tgttctgtcg ggactggtgc ataaacttag
     6061 cgccggaatg gcgacgacgc tgtttatgct ctattcggcg ctaaccggat ttgacgttat
     6121 ccagtatttt tatcgtttac acctattcct ccatcgccag cacgtttgtg gtgacggggg
     6181 gaatgtttgg cgccatgagc ctgtatgggt acaccactaa acgcgatctt agcggtttcg
     6241 gcaatatgct gtttatggcg cttattggta tcgttctggc ctcgctggtc aatttctggc
     6301 tgaagagtga agcgctgatg tgggcggtaa cctatatcgg ggtggtggtg tttgtcggtc
     6361 tgaccgccta tgacacgcag aaactgaaaa atatcggcga gcaaatagat acccgcgata
     6421 gcgctaatct gcgtaagtat tcgattctcg gcgcgttaac gctgtacctg gactttatca
     6481 acttgttcct gatgttactg cgtatttttg gcaatcgccg ctaatcatat tgatctctta
     6541 aaatcctggc cctgcgccag gatttttttt aggactatat ttagggcaaa acagcataaa
     6601 catcttagaa atattttcct gcgcttgcca ttcttattac ggtgataata agaagagtga
     6661 taaatgacaa gtgggacctc tggctgcaat acgtatacgg caaatagcat ttattcccgc
     6721 gacaatgtta tcccttacct attggtatac tgcgctggga ctatggtgta ccgccggtat
     6781 tatatggtta acgttgtata gtcatttttt gataactcac gttcaacctg ttgttgtttt
     6841 gtggatatca gcacttttgc ttggcctggg gtatggggcc gttacctgtc tttcccgctt
     6901 tggcactgtt gtcgcaacgt tgatatatat tgccatcatt acgcttaccg gcgtgtcatt
     6961 agcttacctt ttctcaggtg gcgcgaccat tttcgtgatt gttggaatca tgtttagtct
     7021 taatgcctta tttattttct acctgaatat cagttctggt ctattcaggc cgttaatttt
     7081 tatggcggta agcgggatca tcgctgcgat agttgtcaat agcctggtgg ccagtagcac
     7141 tctggtctgg atagtcagtg tgctgacggt attggtatgg acattgatta cagcactaga
     7201 aaaatcgaca cttcatggtt atgcccgcat gttataccac agcgagtttt catccctgcc
     7261 tcgttgcgct ttatttggcg cgctgacgct ttaccttggc attattaatg ctgtggttac
     7321 gctgtgtcgt tatatcattt tgatgattct ggaaatacta ttatctttca ggccgtaggt
     7381 gttgcaggtt ttttattcag gttggtgatg atgggtataa tgagtaaatt atgtggcaaa
     7441 caattttggt tagcgttttg tgaagctaaa gacgtcactc gcgccattaa aaatggcggt
     7501 gaggatttta ataagaaatg cccgccagcg ctgatttctc atttcattac cggattgtca
     7561 tgggaacatg agcggggtca ttatttaccg gtatgtgcta ttgctggcca ttatttccgt
     7621 tacgttggca acgttctgta ccctgtcatc agtattcatg ggtgagttta acgaagtgct
     7681 cctgctgctg tttagctggt cattgctgct tttttcccgc ttacagatga atacgtcttt
     7741 tttctcagca tatgtttatt tttaccggat aaaacgcgtt gtgctggaaa gcgaaaacgc
     7801 gtctgcttaa attcatttcg ccatcgcccg ctcgtttttc gcccgcaact tcttcgcccg
     7861 gctctccagg atcagatagc acaccagcgc cagcaacagg ggaataaaat agtaaagcac
     7921 acggtacgcg agcagggcgg cgataatcgt gccttgcgac gtatgttcgc ccgccagcaa
     7981 cgcgaggaat acggcctcca gcacgccgat gcctgccgga atatgcacga tgacgcccgc
     8041 gatactgctc accagcagta cgcccagtac aaagaaatag ttcacatcct gacccatcag
     8101 cagccagatg atggcgccca tcgccatcca gttcgcgctg gagatcgcca tctgcgccag
     8161 cgcgaatttc catgacggca gcaccagttt ctgcccttta atcgtcatat gccgccgctt
     8221 cgcaaaggcg caaaaccaca gatagaccgc gataatcaac aataaaacga taccgagaat
     8281 acgtagcgtg ccttcatcga tataccagtg gtcgggaagc tggacaacgc cgaaggtaaa
     8341 aatgatgccg ccaagcagaa tatagcccag ccagttagtg gtaatgctga gtgagaaaat
     8401 gcgcgtaata gtactgccgg gcaatccgag gcgagagtat agtcggtaac gcatcccgat
     8461 cccgccgacc caggtgctga gcgtcaggtt gaatgcatag cagacaaacg ataccaacat
     8521 cacctgtcgc ttcgccagct tatggccgca ataaagccgt ccaagcaggt cgtagcagcc
     8581 gtacagaaga tagctaacga tcaccagtcc tacagcgctt aaaagcgccg tgcggttata
     8641 gtcgcggatg acggtccaga catcacccca gtcgaccttt ttagcataaa ccaccagcag
     8701 aacgacgacc gcaataaaaa acagccaggt cagcactttt ttagccagcc gccagcgcgg
     8761 atgcgattta gccattaggg cttcactcct gaattttctg gatcaacgcg atcctgggtt
     8821 tccatttccg gctgagcagg cgggggaacc tgcgccagat gcggggtatg cgcaggtagc
     8881 cagccgacca gcgccgggaa atggcgtaaa aagtggaacg ccagcacgct tttggtcagg
     8941 ttccaccagg tacgtttcgg cagcatagac tcatcgacct gcttacaatc attcacgatg
     9001 atgccttgta agttatcgcg tagggtctgg ttaaaagtac gatcgtgaat gatcaggtta
     9061 gcttcaaggt taagcgacag gctgagcgga tcgagattac tcgaccctac cgtggcccag
     9121 tgatcgtcca tcagcgccac tttgccatgc agcggacggc gtcggtattc ataaacctgc
     9181 acgccgccct tcaccagata gttatagagc aaccgcgcgc cgactttgac tatcggcatg
     9241 tctggttctc cctggacaat cagttttacg ctcacgccac ggcgggcggc tttacgcatt
     9301 gcgtggagca agcgatagcc ggggaaaaaa taggcgttag cgataatcac ttcacgcttt
     9361 gcctgggtca gcattttcag ataatgacgt tcgatatcgt cgcggtgttc ttcattatcc
     9421 cgccagacaa acagcgcctg cgcttcgccg gggtggcgat tttcttcagc ctgatgatgg
     9481 cgcttccacc agcggcgcgc ggggctttgc cccggcagat tctcgacttc gaattgcagg
     9541 atatcggcca caacaggccc ttcgacccgt accgcgtagt cttgtttcgc ctgcgggccg
     9601 taatccgaca tatgttcggc ggagtagtta atgccgccga caaaggcaat acgatcatca
     9661 atcaccacaa ttttgcggtg cattcggcgg aagatattgg ttcgcaaccc cagtagacgc
     9721 gggcgggggt cgtaatagcg aaaaatcacg cccgccgagg ttaattcgcc gacaaacgcg
     9781 tcgctgagat cgggagagcc gtagccgtcg agtaatactt cggcttttac gccgcgctgt
     9841 gcagctttta gcagagcggc atggagtttt ttacccacct catcttcaaa caagataaag
     9901 gtttccagaa tgattttttg ctgtgcctga gcgatagcct caaacacggc aggatagaac
     9961 tggtcgccgt tttccagtag ctgaatttga ttaccttcac gccagccgca tttcatagat
    10021 ggatctccgc gctaaggggg gcatggtctg ataaatgtcg ccagttccgc aacggtagcg
    10081 ccccaggaga actggcgttc gcattcttga cgtaaatacg atcgagtcgc agcagcggca
    10141 tactcaccgg gaatgtgcgc gccggtcggc catgggcacg ggtgaatatc tcctccagcc
    10201 cggccgcgtt taacggcggg ccggcctttt gccgccagtc attaaagtct ccggccacca
    10261 gcaccggttc tgattccggc aaggcattca cccatcccgc cagcatggtt aactgcgcct
    10321 ggcggtggct ctcccgcagg ccgagatgta cgcacatgac gtggataggg cggttgagca
    10381 tgggcggcgt aatgcggcaa tagagcacgc cgcgtttttc gctaccgccg accgagacgc
    10441 cgcgattttc ataatgttca atgggatagc gagaaagaac cgcgttaccg tgatggcctt
    10501 ccggatagac cgcattacgg ccataggcga aatcgctcca catggtgtcg gccaaaaatt
    10561 catagtgggt agtgtccggc cagttttcga tatgcagcgg atgcacttca tgcgcgccca
    10621 tcacttcttg cagacagacg atatcggcgc cgaccgttct gacggcgtcg cgcagctccg
    10681 gcaggatgaa gcgtttatta aaggcggtaa aacctttgtg cgtattaatt gtgagcactt
    10741 tgaatgaaaa atttcgcgtg tgttgagtca ttttcttcct gtccgcgtca ctatcctgat
    10801 tgaaatagtg tagtcgtcgt cacaaaaaga tgcggtctta cggaattttc cgtaaagttc
    10861 ggtactctga ataatgagag aaaaatgctt caggagaaaa gccatgaagt ggcaacaacg
    10921 cgttcgtgtc gcaaccggcc tcggttgttg gcagattatg ttgcatttac tggtagtggc
    10981 gatgctggta ataggctgga tgagcggcac attagtgcgc gtcggcctgg gattatgcgt
    11041 gctttatggc gtgacggtac tattgatgct ggcgttgcag cgccatcatg agcagcgctg
    11101 gcgcgatgtg gcggatgtgc tggaagagct gactaccacc tggtactttg gcaccgcgct
    11161 gattgtcctc tggctgctat cccgcgtatt gcaaaacaat gttttactgg cgctggcggg
    11221 gctggctatc ctggccgggc ccgccgtggt ctcgctactg gcgaaagata aaaagctaca
    11281 tcactttgcg tctaaacatc gcatacgccg ctgaacccgt ggtggccgct atcaccagta
    11341 gcggccacaa acttccccag acaatcccca gactcgcgtc cttaagataa atttgcttag
    11401 taatatcagt aaagtggcgg ataggattta tccacgtcag gttttgcagc cagaccggca
    11461 tattttccac cggcgagaca taacccgaga gcaaaatcgc cggcatcata aagacaaaga
    11521 cgccgataaa cgcctgctgt tgcgtggcgc aaagtgctga tatcagcaag ccaaagccta
    11581 ccagcgacag cccgtaaatc accatcgtga aataaaacag cgctaacgaa ccggcgaagg
    11641 gaatttggta tgcccaaatg ccgatagcca gcacgatcgt ggcctggaag gtcgcgacaa
    11701 tcagcgccgg caccgctttg ccgacgaaaa tctgccaggt ggtgagcgga gagaccagca
    11761 gctgatccag agtgccttgt tcacgctcgc gggcgacgga cagcgaagtg acgatcatca
    11821 cgccgatagt ggtgatcatg gcgatcagcg agggcaccac aaaccacttg tagtccagat
    11881 tcgggttata ccagttgcgt accaccagtt cgctattgtt gggctttggc ttgccgtcca
    11941 tcaatgtctg ctgatactcc ttgacgatct gttgcagata attggcggca atttgcgcgc
    12001 tgttggagtt acgtccatca agaatgagtt gcatcggcgc aggctggaag gtatccagat
    12061 tccgcgagaa atccgccggg aagcgcacca gcagcagcgc tttttgcgta tcgatagtcg
    12121 gctggatctc ctgcggactg ttcagcaata gcacatgggt aaacgctttc gcgcgggcaa
    12181 aacgctgggt aagttctacc gaatgtttgc cgttatcttc gttatagatg gcgatagtcg
    12241 cgttagtgac ttcaagcgtc gcggcgaacg gaaacaggat gacctgaatc agcaccggca
    12301 gaatcaggat cgcgcgcgtt tgcggttcgc gtaaaagcga ttgcagttct ttgcgaatta
    12361 acgtccataa acgatgaaac atgcccgtcc tctcagtcca gtttgtaggc ctgataagca
    12421 aagcgcatca ggcataatgc cggatggcgg cgtgagcgcc ttatccggcc tacgacgaca
    12481 attatccata cacatattta atccagccgt cgtttggttt ttagccacgt caggccaata
    12541 aacatcaccg ccgaggcgat taaaaacagt acgttaacgc ctaacacgac cggaatattg
    12601 ccggccagaa acagactttg cagggtgctg acaaaatagc gcgccggaat aatataggtc
    12661 accgcgcgga tcaccgcagg catactgtct atctggaaga taaatccgga cagcataatc
    12721 gaaggcaaaa acgcggcgtt cagcgccacc tgcgcggcgt taaactggtt gcgagtgatg
    12781 gtggaaatca acagccccat ccccagcgta ctcagtaaaa acagactggt gatgataaac
    12841 agaattacca gcgaaccgcg atacggcacg ccgagaataa acaccgatac cagcatacag
    12901 agcagcatcg ccagcatacc gagaaaataa tagggaataa gcttacacag cagcagttca
    12961 acacgcgtca cttcggttga gagcagcgcc tccatcgtgc cgcgttccca ttcgcgggca
    13021 acgaccagcg aggtgaggat ggcgccaatt accgtcatga taatggtcac cgccccggga
    13081 atgataaaat gctgactgat cgccgccggg ttaaaccagt agcgcgtctg gacgtcgata
    13141 agcggttcaa aggtgtcgcc gcgatcttcc gcgcgctgct gttgccagat ttgccagatg
    13201 ccttcaacat agccctgaac gaagttggcg gtatttggct cgctgccgtc ggtaatcacc
    13261 tgaatcggcg cgctgtcacc gtcgcgcgcc atttgctgcg cgaaatccac cggaatcacc
    13321 accagtccgc gaatgcgtcc ggcctgcatt ttttcaatta attcatgacg attatcgcta
    13381 atggtcgcgt cgatataggg tgaaccggtc atcgcatgag tgaaatccag cgcctcctgg
    13441 ctttgctgtt caagcagaat ccccacccgc agcttgctgg agtcgaggtt aatgccgtaa
    13501 ccaaaaataa acagcaacag cagcgggatc accaccgcaa tcagccagct actgggatcg
    13561 cgcacgatct ggcgcgtctc tttgacgcac aacgcacgca cgcggcgcca ggagagagac
    13621 ttactcatgc gtatgctcct tatcccagtc attgatgaga gtgataaagg cctgctccat
    13681 cgtcggatcg gcctgttgct catcggcggc ctgcgctttg agatcgtccg gcgtaccgct
    13741 ggcgataagc ttcccacgat aaaccagtcc gatgcgatcg caatattccg cctcatccat
    13801 aaagtgggtc gtcaccatta ccgtgacccc tttttccacc atgctattaa tgtgcagcca
    13861 aaattcacgg cgggtgaggg gatcaacccc ggacgttggt tcatcaagga ataaaatatc
    13921 cggttcgtgc atcagcgagc aggccagcgc cagtcgctgt ttaaaaccca gcggcagcgc
    13981 atcggtggga tgcgacgcga tgcttttcag accaaatgct tcactcatgc gctgaatttt
    14041 ttcattttgc gcgcggcccc gcaaaccgta gacgccggag aaaaaacgca ggttctgctc
    14101 aaccgtcagg ttgccgtaaa gcgaaaattt ttgcgccata tagcccagat gctgacgggc
    14161 tttgccggag ctgactttca ggtccatatc cagcaccagc gccttgccgg acgtcggcac
    14221 cagcaggccg cacatcattt taaaggtggt tgatttaccc gcgccgttcg ggccgagcag
    14281 gccaaaaatc tcgccgcgtt gtacgacgaa attaacatgg tccgtggccg cgaaatcgcc
    14341 aaattttttc gtcagttcct gcgcttcaat caccgtttcg ccggcagtgc cttcaaccgt
    14401 atgcaggatt gaacccagcg gagactccga ggttcccgct ccgccaagca gatcgataaa
    14461 cgcatcttcg aaacgcggcg cggtctcatt gagggtgatt tccggcatcc cttcggcctg
    14521 acgaatatct gctgcggtcg cctctttttt caggatcagg cgtaccgaac gcccctgaat
    14581 catgccgtcg ctcacctgcg gcagtctgag cgctctctgt agtaacttac ggttgttttc
    14641 ctgtggacta ctcatcagaa agctacgacc ggccatcgtt tgcgtcagcg ctttaggttc
    14701 gccctgatag agcagctcgc cttcattcat cagcagcaca tcgcgacact gttcggcttc
    14761 atccagatag gaggtgctcc ataaaatcag catcccgtcg cccgccagtt cgtggaccat
    14821 ttgccacaac tcgcgccgtg aaatcgggtc aacgccaacg cccggttcat ccaacagcag
    14881 cactttcggt tcgccgacca gcgtacaggc cagccccagt ttttgcttca tcccgccgga
    14941 caattttccc gccagacggc cagtgaaagg gccgagggcg gtaaactcca acaaacgggc
    15001 aaaggtcttt tcccgtatct cgccggtaac gctgcgcaaa tcggcataga gattaaggtt
    15061 ctccatgacg gtaagatctt catacagccc gaatttctgc ggcatatagc ccagaaccgc
    15121 gtgcagctcg ctgtcgtttt gtatcgggtc gaagcccaat acggacgcgc tgccgccatc
    15181 ggctttgagc tggcccgcca gcatacgcat cagcgtggtt tttcctgcgc cgtccggccc
    15241 taccagcccg gtgacataac cggaatgaat ggtacagtcg agcggcgcga cggcgggttt
    15301 atccattccc gcaaagcgct tcgtcagacc gttcagcgta ataacggcct cactcatgcc
    15361 gtgcctcgtc attaaatttc accgtgactg gcatcccctg gcgtaacgca tcgtccgcat
    15421 cggtgacgat aatgcgcagg cgatagacga gatcggtacg cagatccggc gtttcgacgg
    15481 ttttcggcgt aaattccgcg gtgggggaaa cgaaaccaat cttgccgtgg taaggtttgt
    15541 caggacgtcc atcggtatac agcagaatat cgcgccccgg ttgcgtctga ctgaggttgc
    15601 gttcatcgac ataggcgcgc acccagacgg ggcgggtcag cgagagtgtt aataccgtgc
    15661 tgccggcgtt cagcatactg ccaggctcga ccgcgcgggt gagcaaggtt ccgttggcag
    15721 gcgcgataag cgtggtgtcc tgcaaatcaa gctgcgcctg cgccagttgg gcctttgcct
    15781 gttccagact ggctttcgcc tgggcgatat cctgttcacg attaccggta cggtactggc
    15841 tcagtttatc ctgcgcggac ttcagcgtcg cctgcgcctg atcgcgcgat gagcgggcat
    15901 tttccagatc gttagcggaa atggtgcggc ttttccacaa tccttgctga cggttataaa
    15961 agttttgcgc gtagtcatag gcggcttgcg cctgtctgac ggcggcggcg gcctgggcta
    16021 tctcttcatc gcgatagcct gccagcatca aatcatattg cgcctgcgcg accgacacgc
    16081 cagctttcgc ctgcatcagc gcgttttcgt atggcgcgtg atccagttcg ccgagcacct
    16141 gtccggcttt gatagtatcg ccttcatcaa cattcagcga cgccagcctg ccgccgacgc
    16201 gaaagctgat attgacggta cggatatcga cattaccgta tagcgtcagc ccatcgtcct
    16261 gccgactttg ataccaccag gttccaccgg caatcacagc gacgatcgct gcgattacca
    16321 gtccgataac gacaggtttt ttcatcagtc cagactcctt tgcgttaaac cgtgcagaat
    16381 aagatcgatg tggcaggtta ccgtctggta aatcagctcc gctttttctt catcaaactg
    16441 cggccagccg gtacgtaaca gaatagtttc tttgccgaga cgaaacgcta gtacttcgcc
    16501 cagtaaggca tgggtatgca aaatcatgcg cgtatcattg gcgtcgcagc cggtataagc
    16561 ggcaaccaat cttgtcagat aggtgtgcaa cggatcgata acctgttcat ggaccaattg
    16621 ataggccgat gtgggagaga gctgctcgcg tgaaataaat ttgctcaggt taacggtgtc
    16681 ttcctgcgtc agcagcataa tcatgttctt gcaggcgagc agaatgagct cgcgtatggc
    16741 gtctcggtca ggggcaggct ggctaaacag acgttccgct ttttcagcat gggggcgaaa
    16801 tttttcgcca agaaaatcag caatccactg ggcgcaggcg aggtataaat cctcttttga
    16861 gccgaaatag taagtaatag cggcaatatt ttgccccgcc agcgcggcga tatcgcgcgt
    16921 ggtggcatgg aggccatact cgccaaactg cgccagtgcg gcggcaatga gctgactttt
    16981 cgcctgctcg cccttggtgg tcgtggtggg aatattcatc acacgcccta attattaatc
    17041 aatcgattga ttaagattat gactcataat ggcacttgtc cagtgtggtc gattaatttg
    17101 tctttgccac ctttcgggat aatttatgcg ccgcatcaca aaaactgcta cactccgccc
    17161 cttcatgaca ttgtggtttt tgtcattcca aatttgagca tctccctgaa aactacaccg
    17221 gtaacggtcg gggcggtccg gagtagttat gtcttttgat tccctgggat taaaccctga
    17281 tatcctgcgc gccattgccg agcagggtta ccgtgaacct acccctattc agcaacaggc
    17341 gattcccgcc gtgctggaag gccgcgatct gatggctagc gcccagaccg gaaccggtaa
    17401 aacggcgggt tttaccctgc cattgttgca gcatctgatt acccatcagc cgcacgctaa
    17461 aggtcgtcgc ccggtacgtg cgttgatcct cacgccaacc cgcgagctgg cggcgcaaat
    17521 tggtgaaaac gtcagagatt acagtaaata tctcaatatt cgctcgctgg tggtatttgg
    17581 cggcgtaagc attaatccgc agatgatgaa actgcgcggc ggcgtggatg tgctggtggc
    17641 gacgccggga cgtctgctcg acctggaaca tcaaaatgcc gtgaagctgg atcagattga
    17701 gattctggta ctggatgaag ccgaccgtat gctggatatg ggcttcattc acgacattcg
    17761 tcgcgtgctg gcgaaactgc cggcgaagcg tcagaatctg ctgttctccg ccacgttctc
    17821 cgacgacatc aaagcgctcg ccgaaaagct gttgcgcaac ccgctggaaa tcgaagtggc
    17881 gcgccgcaac acggcctcag agcaggtgac gcagcacgtg cactttgtcg ataaaaaacg
    17941 caaacgtgaa ctgttgtcgc agatgattgg ccagggcaac tggcagcagg tgttggtctt
    18001 cacccgcacc aagcatggcg cgaaccatct ggcggaacag cttaataaag acggtattcg
    18061 cagcgcggcg atccacggta ataaatcgca gggcgcacgt acccgcgcgc tggccgattt
    18121 taaatccggc gatattcgcg tgctggtggc gacggatatt gcggcgcgtg gtctggatat
    18181 tgaagagctg ccgcacgtgg tcaactatga actgccgaac gtgccggaag attatgtaca
    18241 ccgtattggc cgtaccggtc gcgcggcggc aactggcgag gcgctgtcgc tggtctgtgt
    18301 tgacgagcat aaactgttgc gtgatatcga aaaattgctg aaaaaagaga tcccacgcat
    18361 tacgacgccg ggctatgagc cggacccgtc gattaaagcg gagccgattc agaacggccg
    18421 tcagcagcgc ggcggcggtc gtggacgcgg acaaaatcag gggggagcgg ggcgcagtca
    18481 gcagccgcga cgtcaggata gcggggcggc gaaggcgaaa ccaaaaccgc gcacaggcga
    18541 ggggaaaccc gctggcgaca aagcacgtcc gccgcgtcgc ccgcgcagaa tcacgcctgc
    18601 ccagtaaatt ttatccggca acatgcccgg tagcgcgacg cttaccgggc ctacggacta
    18661 tgcaaatacg taggccgggt aaggtgcttg caccgccatc cggcaaaata cacatcgcgt
    18721 tgcgagccgc cttccagaac cggcaaaaaa ggtacttccc gcccctgaaa tgtgacacaa
    18781 tagtggctgt ttatacagta cttcaggttt tctcatggca ttgaccgctg cgctgaaagc
    18841 gcaaatcgcc gcctggtata aggcgcttca ggatcagatt cccgacttta ttccccgtgc
    18901 gccgcagcgg cagatgattg ctgacgtcgc cagaacgctg gccggggaag aagggagaca
    18961 tctggctatt gaagcgccga ccggcgtcgg gaaaaccctc tcctatctta ttcccggtat
    19021 cgccattgcc cgggaagagc aaaaaacact ggtggtcagt accgctaacg tggcgttaca
    19081 ggatcagatc tttagcaaag atttgccgct gctacgaaaa atcatccccg atctgcgctt
    19141 taccgccgcc tttggccgcg ggcgttacgt gtgtccgcga aacctggcgg cgctcgccag
    19201 tagcgagcct acgcagcagg atctgctcgc ctttcttgat gacgaactga cgcctaacaa
    19261 ccaggaagag caaaagcgct gcgccaggct gaaaggggat cttgacggtt acaaatggga
    19321 tggtctgcgg gatcataccg acattgctat tgacgacgat ctgtggcggc gattaagtac
    19381 cgataaagcc agttgtctga accgcaactg tcactattac cgcgaatgtc cattctttgt
    19441 cgcccgacgt gaaatacagg aagcggaagt cgtggtggcg aatcacgcgc tagtaatggc
    19501 ggcgatggaa agtgaagccg tactgccgga accaaagcat ctgctgttgg tactggatga
    19561 aggtcatcat ctgcccgatg tcgctcgcga tgcgctggag atgagcgcgg aaattaccgc
    19621 ctcctggtat cgcttgcaac tggacctgtt cagcaaactg gtggcgacct gcatggagca
    19681 atttcgccct aagaccacgc cgccgttagc gaatcctgag cgacttaacg cccattgcga
    19741 ggaggtgtac gaactgatcg cctcgctcaa tgccattctt aatctgtata tgcccgcagc
    19801 gcaggaggcg gagcaccgtt ttgcaatggg cgagttgcct gatgaggtca tggaaatctg
    19861 ccagcgactg gcgaagctga ccgagacgtt gcgtgggctg gcggagtcct ttctcaacga
    19921 tctcagcgaa aaaaccgggt cgcacgatat tgtgcgtttg catcgggtga ttttacagat
    19981 gaaccgggcg ctgggaatgt tcgaggcgca aagtaaatta tggtgactgg cttcgatggc
    20041 gcagtcttca ggcgcgccgg tgtccaaatg ggcgacgcgt gaaatacgcg aagggcaact
    20101 ccacgtctgg ttccattgtg tcggtatccg cgtcagcgag cagctggaaa gattgttatg
    20161 gcgcagcgta ccgcacatta ttgtcacctc ggcgacactg cgctcgctca atagcttttc
    20221 gcgcctgcag gaaatgagcg gcttaaaaga aaaagccggc gaccgctttg tggcgctgga
    20281 ttcgccgttt aatcatgtgg aacaggggaa actggtgatt cctcaaatgc gctacgaacc
    20341 cactattgat aacgaagagc agcatattgc cgaaatggca gcctattttc gcgagcaact
    20401 ggagagcaaa aaacatcatg gtatgctggt actgttcgcc agcgggcggg cgatgcagcg
    20461 ttttctggag catgtcgctg atgtgcgctt actcctcctg gtccagggcg accagccgcg
    20521 ttaccggctg gtggagctgc accgtaaacg ggtggagagc ggcgaacgca gcgtgctggt
    20581 tgggcttcag tcttttgccg aagggctgga tcttaaaggc gagctactga cgcaggtcca
    20641 tatccataaa attgccttcc cgccgatcga cagcccggtc gtgatcaccg aaggcgaatg
    20701 gctaaaaagt ctgaatcgtt atccgtttga ggtacaaagc ttaccaagcg cgtcttttaa
    20761 tttaattcag caggtagggc gattgatccg tagccacgcc tgtcggggag aagtggtcat
    20821 ttatgataag cggttgttga ccaaaaacta cggacagcgt ttactgaatg ccttacctgt
    20881 ttttccgata gagcagcctg ccgtgccaga cgttatagta aaaccaaaag caaaacctgc
    20941 acgccgccga cggtgttaat gctgtgagca cacttcaagg agctttcaat ggattatcgc
    21001 aagatcatca aagagatcgg gcgaggtaaa aatcacgccc gcgatctgga tctggatacc
    21061 gcgcgcggtt tgtatacccg aatgctgaat ggcgacgtcc ccgacctgga aatgggcagt
    21121 atattgatgg cgctgcgtat taaaggcgaa ggcgaagccg aaatgctggg cttttatgaa
    21181 gccatgtaga atcatgccat caaactgaca ccgcccgcag ataggccgtt gccggtcgtt
    21241 attcccagct ataacggcgc gcgtaaacag gcgaatttaa cgccgctgct ggctatcttg
    21301 ctgcataaat tgggctttcc agtcgtagta cacggcgtca gtgaagatcc gacccgcgta
    21361 ctgacggaaa ctatatttga gctgatgggg attgaaccca ccctacacgg cggacaagcg
    21421 caggccaaac tggacgggcg ccagccggtg tttatcccgg tgagcgcgct ctgcccgccg
    21481 ctggaaaaac agctagcgat gcgctggcgg atgggcgtgc gtaacagcgc gcattcactg
    21541 gccaagctgg cgacgccatt tgctgaggat gccgcgctgc gtttatcaag cgtttctcat
    21601 cctgaatatg ttctgcgtgt ggcgaccttt tttagccgca ttggcgggtg ggctttgctg
    21661 atgcatggta ccgaaggcga agtctatgcc aacccgcaac gctgtccgca aatcagcctg
    21721 attgatagcc gcggcgtgca ggtactgcat gagcgccaga gcgacacgta cgacgagccg
    21781 ctttcactgc ctgcgactaa agatcctgaa atcaccgcgc gctggattga gcgctgcctt
    21841 gccggccacg agccggtgcc gcaatcatta aaaacgcaaa tggcctgttg tctggttgcg
    21901 acgggagagg cggcgacgtt agaagacggg cttgcgcgcg tcgaacaggc ttttagcgaa
    21961 taaaaaaagc ccgtccagtg gcggacgggc aaataagggt aacaaacagg gttaatgagg
    22021 gttggagcag tgggtctgtt ggcaaacaga cgagggtaat acccgtcaga attcaaacaa
    22081 cagcgatgtt acagcctgaa atctggcggg caggtaaatt atttataaat caccgcagtg
    22141 ccgctcattt tgtcattacc tacggcggag gtgatgttat aagcgcttgc gccagcagcg
    22201 gcggcttttt cagccagttt agcttccagg ccatccagcg tggtggcgcc atcggcagac
    22261 actacgccga ttttatgcag gttttgcgtc tgagacgcgc taaccggttc tgcggcaaaa
    22321 gcgccaaaag aaagggtgga aagcgcgatg gctgcaacag catatttaat ggttttcatg
    22381 attaatctct cgcaggttat tctgtttatg ggacgatgtt ccgtcgatgt gatgagtatc
    22441 acggtttttt gcgaaagata aaatcgaata gaattgacgg ccttgctcaa aatttttgaa
    22501 tgacaaataa cctattgatt attaattaat tcaacggtgg aatttaccgt tcttgtcatc
    22561 tggctttaca gagtcgaggt taacggcaca ttctgcgacg cagaacgcta aaaagcatga
    22621 gcgtaaagga atggatgata ctggcggttt cggtaaagaa aagtcagcgt aactgactgt
    22681 cttttgaacc tctacgatta tatcctgaaa atgttgcgtt atgtaaatct ttctcctgtt
    22741 ggcaggatat gcataaccga acgcccggta cggctttacg ccgcgcttca gggataggat
    22801 cgccgcaaga ttcgcattca tcgcgacttt cgccgtgggg aagttcgccg cgagcgcggg
    22861 caacggcatc ttcaatggta ttgttgattt gttcattcac tgcgtcgtca tttgcccagc
    22921 cggatgccat cacgctctcc tgattttagg gtacctgagg ttaagtgtag cgccgtcagg
    22981 tgaaaaaatc gcatcgcgcg atcttttcag accatgagca gagccaatgt cattcagaga
    23041 gccgataaaa cgagcgaggc agggaattcg cggtggtata tttaccccgt ggcgttatac
    23101 gggtatctta cgccgctgct aaaaggagaa tgccatgtcc gcccagaaac cggggttaca
    23161 cccgcgcaac cgccatcaac accgttatga tctcgccgca ctgtgtcaga ccacgccgga
    23221 attgacgtcc ttatcttatc cgcacgcccg ccggtgaaca gagcgttgat tttgctaatc
    23281 cgcaagcggt aaaagcgctc aataaggcgt tgttggcgca tttttatgcc gttacacact
    23341 gggacattcc gccagggttt ttatgtccgc cagtgcctgg tcgtgcggat tatatccatc
    23401 atctggcgga tctgcttggc gaaacaacag ggagtattcc ggcgcaggca actattctgg
    23461 acgtgggcgc caattgtatt tatccgctta tcggcgtcca tgaatatggc tggcgattta
    23521 ccggtagtga agtcagcgac gcagcgatgt ccagcgcgca ggctatcatt caggctaata
    23581 cggggttaag ccgcgccatt cgtctgcgtc ggcaaaaaga tccggcggcc atttttaccg
    23641 gtattattca taaaaatgaa ttttatgacg caacgctttg taacccgcct tttcacgact
    23701 ccgccgccgc agcccgcgcg ggcagcgagc gtaagcgccg caatttgggg cagaataaag
    23761 atgatgcgct gaactttggc ggtcaacagc aggagctatg gtgcgaaggc ggcgaagtcg
    23821 cctttattaa aaaaatgatt gctgaaagcc aaaccttccg ccgtcaggtg ttgtggttta
    23881 cgacgttggt gtcgcgcggc gagaatttac caccgcttta ccgggcgttg acggaggctg
    23941 gcgcggtgaa agtggtgaaa aaagagatgg cccaggggca aaagcaaagc cgctttatcg
    24001 cctggacctt tatggatgac gaccagcgtc gccgttttat cacccgtaaa cgctaaatcg
    24061 tcggttcgcg cggcggcagt gaatcaggcg gcgggccgcc ggcgggggcg ggcagaacct
    24121 gatacgtttg caccggcgcg cgaacattgg ccagatcaaa atgctttttc acctggctat
    24181 caagggcaaa acgcaccgtc cactgcttga gcggtagcgt ggtgaacgac acgcgtaaag
    24241 taaacgccgt gttcgttaaa ccgacaatac cggcgaacgt gggttcgccg ataatcagcc
    24301 cgcgaatatc ctccgtctcc atcagcgccg ttaccgcgtc tttcagcgcc tgattcgctt
    24361 tatccgcatc ctcatggcga tccacgtcat agttggcgac aacagagccg ataccgcgca
    24421 caaagttggc gaaagtggtg atcgaggacc acgggataat atggtatgcc ccggtatcct
    24481 gccgcacgcc gacggaacga atcgacattc tttcgaccgt ccccatcagc gggcctatgg
    24541 tgactaagtc gccggtattc atcccgtttt caaactgaat aaaaacgccg gtaataatat
    24601 ctttcaccag ggtttgcgaa ccgaaagaga tagccagacc taacgccccc gcgccagcca
    24661 gcaacggcgc gatattgacg ccgatttccg ataacacgat catgatggtt atggtactga
    24721 taatcactgc cagcgcattg cggaacagcg tcagcagcgt gcgcgtgcgg gcgctgggta
    24781 gcgggcgact atgaatatcg gaggccaggc gattctcaat cagactggcg agaatcgtcc
    24841 atcccacggc ggagaagaat aagattaacg cgatacggat gaggatatcg accatctttt
    24901 cccccgcgcc ataatgtagc cagtgccaga aatcgaatag cccccaggcg ttgagcaaca
    24961 gcataacggc gacgcagacg gtcaaaaagc gtgcgacttt tagcgccgag gagagccagc
    25021 cgttaagccg cttttgtaat tccgggtaat tgcgctgcgt atggggcgac agggtgatgg
    25081 ttttcgctat ccagcgggta aacataccgg agataaacgc ggcgatgcca ataatcgcca
    25141 gactgcgcac ggtcgcgccc atcataaact tcaggctatt gcctgggtcg aataacgaga
    25201 agaaaaacag cacgataaag taagcgctgg ccagccagtg ccacaccagc gcaaaggcgc
    25261 ggataaacag gctaaaaaag gctaatgatc gttccgccag acttaataaa tgttgcgtaa
    25321 tctccgcttt gtttttaaag atcaggtaca gcgcccagat ggtgatgcag agcatgatcg
    25381 ccacgttcgc catcgccccg acctgaacat tcacctggtt ggaaataatc ggaacggcaa
    25441 caatcagccc gtagccaatc aaactgctaa gggaactcat acggcgattc cagtaacgcg
    25501 ctgtcgcatc ctgaatcgcg aatgggcgta attccggtac attagggcaa aaaataagcc
    25561 gcagaatcgc tttaaagaac tctatcagcg cgaaggcatt caggaacagg ctttgctgaa
    25621 aagcgatagt tcgacttccg gcatggaaat tatcactgag catctgaccg ataaataagg
    25681 tgagcgccag tagcagcagg tcgataataa acgcgccggc gatcatcgcc gggagctgta
    25741 accagttgct gcgttcacgg tttttcttgc gcgcccacag gcccattttt cgatataacg
    25801 gcagggcgca aagccgtatc acgctataaa aaccaaatac cgcgacggcc agaaataaaa
    25861 agtgggttaa cgcgttggtg aaggtttgcg agttaaacgg cttgtacggc gcatcggtga
    25921 tgttgcgata aagctgggcg aaacgggtag cgaaagcatc gccgtactga cgggtaacgg
    25981 tggtgacgtt ctccagtacc gttttctcat ctttggccgc aggcggggca agcgctggcg
    26041 ctggctcggt cggcggcgtg gttgaggctt cgcggagttg cgctatcaat tcgttacgtg
    26101 aagcctcgtt ctccagtacg tcagccaggg ccgcataggc cgcttttttt tgttcaggac
    26161 tgggctctgg cgctgcttgc tggctggttg atgtccccgt ggtcacgccg ggtatggcga
    26221 ccgcatgggc aggcgcgccc agtagacaaa aaaggatgaa cagggtccac cgcatgactc
    26281 ctccagtgag aaaagagacg caaaacacta agtatagatg gcgcagggga gggaaaatga
    26341 aatgggacta ttccatgatg cccttcctgc cgcagggcag gaagggcgat atctcaggag
    26401 acgtgctgta aaaattcctg taaacgtggg cttggcgggt tttcgatcaa cgcctgcgga
    26461 ctgccatctt cggcaatacg gcctttatcg atgaaaatca gccgtgaggc gactttttcg
    26521 gcaaagccga tttcgtgagt gacaatgacc atggtcatgc cttcttccgc cagatcctgc
    26581 atgactttca gcacttcatg gcgcagttca gggtccagag cggaggttgg ctcgtcaaag
    26641 agcatcattt tcggcttcac ggccagcgct cgggcaatgg cgacgcgctg ttgttgacct
    26701 ccggaaagct cggaggggta gtggtgcgcc cgttccgcca gtccaacttt cgctaacaga
    26761 gctttcgcct gtttttccgc ttcttctttc tttacgccgc gcacgcgcag aggaccgaac
    26821 atcacgtttt cgagcgcggt cagatgcggg aacagataaa actgttgaaa caccatgccg
    26881 gcttcctggc gaatcagccg ttcgtctact ttcggatcgt tgactttcag accatcgaca
    26941 atcagatcgc cggaggtgat ctcttccagt ttattgatac agcgtaataa cgtggattta
    27001 cccgaaccgg aagggccgat aatcacaacc acttcgccct gacggatgtt taaatcaatg
    27061 ttatgcagca cctgggtggg gccaaagtgc ttggagacgt ttttaaattc aatcacagga
    27121 ttttcatcct tctttcaaga cgacgcaaaa taaagctcag caccagcgta atgatcaaat
    27181 agaagacggc cacggcgctc cagatttcca gggcgcgaaa gttaccggca ataatttcct
    27241 ggccctgacg ggtcagctcg gctacgccga taacaataaa caacgaggtg tctttgatgc
    27301 taatgatcca ctggttgccc agcggcggca gcatacggcg cagagcaagc ggtaaaataa
    27361 catggcggat ggtttcccgg cgagaaaggc ccagcgccag acctgcttcg cgaaaacctt
    27421 tgtgaatgga tagtactgcg ccacgagtaa tttccgcgat ataagcgccg gagttaatca
    27481 taattgtcac gaccgctgcg ctgaacggat caatacgcaa atcattaaat gccatcggca
    27541 gggcaaagta gataaacatg acctggacaa cgataggcgt gccgcgaata atttcaatga
    27601 aaaccagggc gatgtggtta gcgaaccagc cgccaaacgt acgggcaaaa cctgccgcca
    27661 gtccaataac caggccgcca gccagaccga ggaccgagat ccacagggtc attttagcgc
    27721 cctcaagcaa aagcggaatg gcgggccaga tggcgctcca gtcaaactgc atatgtcgtt
    27781 cctgttaccg tggtgtaaat agtcaaatgc tctatccggc gcggaaatgg cgtgaaagtg
    27841 tcttatccgt cacggaaaag agctgtaggc ccggtgagcg tcctcactac cgggccacaa
    27901 gccaacatca ggtcgtttta tttaggttct gtaccgaacc attttttgta gatttcgtta
    27961 taggtgccat tctcacgcag cgttttcagc gcgccgttga ctttctcgcg cagttcatcg
    28021 ctgcctttcg ggaaggcaac tccgtattgc tgtgcttcca gcgattcgcc taccgccttg
    28081 aactggccgt tgcctgcggt tttgataaag tacaggatgt tcggcgtatc gtgcagaacg
    28141 gcgtctgcgc ggttggtgcc taattccatg tacgcgttat caatgttcgg gaactgacgc
    28201 aggtctttgg ttttgatatt cgctttcgcg taatccaccg acccggttcc gctcttcacg
    28261 gcaacgactt tgccatcgag gtctttaacg cttttaatat cgttattgtt ggctttcacc
    28321 atcacgagca gaccgctttt gtaatagcca tcggaaaagt cgatcgcttt tttacgctcg
    28381 tccgtaatcg taatacccgc cagcgccaga tcgatatttt tggtttgtaa tgccggaata
    28441 atgccgctga aatccatcgg tttcagggtg tagtccagct tcagttcttt cgcgatagcg
    28501 tcccacagat caacatcaaa accgacgtat ttgtcgccct gtttaaattc aaacggaacg
    28561 aacgccgtat cggttgccac aacgagtttc ttatccgcag cgtgcgaaga caccgcaaaa
    28621 gccagggtaa gtgcagccag tgaaactttt aatagagact tcatagcatt tccttttcta
    28681 tccacggggc gatcccctgc gagaacatgt agcgtaatga aaaaatcatg ccaattatgt
    28741 aactcattgt tttaacagaa gcgtcaatca ttcctgtgca caataagtcg ggcaaaacca
    28801 gtatgctgca ctgttttggg gcactgattt agtgcatgaa taacaaagta gagatacagg
    28861 gtctatttag cgtaaaaatt gttgttaaaa caatctttaa ttaacgattg tgtgatgtaa
    28921 ttattacaaa taattcactt ttatcgaagg gaagtacaag acatgtgcac tatttaagtg
    28981 caaaacccct gtgccaggca ggggtatagg gatgacttat atacctgtgt acatcaagtt
    29041 gcaggtgcgt tcgcttcagt gaccgacgga agtcaggctc ctgcggattc gctgcgtttg
    29101 taccttcctg caactcgaag tattcagggt agagatagat ttattcgatg ttggattcga
    29161 taaaccacag gaatttatcg aggtcgcgtg atgcggcggt aaagatatcg gcagtgtctt
    29221 catctttggc ttcaccgata gctttgcgaa catcattagc gacaacagcg tagcgatcgg
    29281 ccagttcttt taagtgatcc tgcacgttat ggatgtcgag cggatagctt ttcagtggag
    29341 ttttgctgtt gataacttgc gtggtgccta acgccacacc gccaagctgt acggcgcgct
    29401 cggccatagt atccagatga tcggtcagtg cggtacggaa gccatccagc atctcatgaa
    29461 cggcaataaa gttagcaccg cgcatgttcc agtgggcctg tttcgtgatc agcgacaggt
    29521 caatgaactg gatcacctga cgattaagca actcaaccgt cgctttttta tcgctctctg
    29581 atacatcgtt acgggtataa agcagattag acgcttttgt ttttaccagt ttagcggtac
    29641 tcataatctc atatcctctt gatgtttgtg tcccaggtaa ttaacgaaaa taagtatagc
    29701 accggttttt aacttcgctt ttttgaattt acctatcact ttaatagtac agacaagatt
    29761 taatatttat tttggttatg aatcaattgg ttagatgagt ttgttgtttg atgggtaata
    29821 attctcattt taatgtaaaa aatgagaaaa aatatgacaa aaaatgacga agtaatagcg
    29881 cgataataaa aggtgaataa cgaggtgata ttctgcatga ttatgcacat catgcagaat
    29941 aagaaactat tttacgtcaa cttgtttaat ttgcggttcg cggcgaatcg ttagggtaga
    30001 acccattgag gcggcaatga tggcgcacag ggccaggatt tgtatgcccg taagcgtttc
    30061 gcccagaaaa atcatcccgg aaatggcggc cagcacgggt tccatgctca tcagcgtacc
    30121 gaaggtgcga gttggcaggc gcgtcagcgc aatcatttcc agtgaataag gcagcgccgt
    30181 agaaagcaca gcgaccgcta accctaaggg aagaatcgac cagtgccata gcgcatcgcc
    30241 agcctgaact gcgccaatcg gcacgaaaat gatggcggta atcagcgagc ctaccgccac
    30301 cgtggccgga ccatgttccg cgcctgctcg ctggccggta agaatataga cagcccaaca
    30361 ggcgccagcg ccgagcgcta acgcggcccc ggtaagatcg acgtgagaca tatcttgtcc
    30421 taatggcagc aggaaccaga gtccaagcac agccagtacg acccaaataa aatctaccgg
    30481 acgccgggat gaaaacagcg cgaccgccag agggccggta aattccagcg cgaccgcaat
    30541 acccaacggc accgtctgaa tcgacagata gaatagatag ttcatcccgc ccagcgacag
    30601 accataaaac agtaaaggca gccgctgctc tttggcaaaa cgcaaacgcc agggtttgaa
    30661 aaaggcgata aggataagcg ttcccaacgc cagacgaagc gccgttacac ccggcgcgcc
    30721 aacaagagga aataacgatt ttgccagtga agcgccactc tgaatagagg acatggcaat
    30781 gagcaaaacc aaaatgggca accagactgg tagtttacgt gttgaccccg gcatcctttc
    30841 tcctgtcaaa aaatgtcagt acgagtaaag gtggcagtgt aatggaaatt ccccggagcg
    30901 gttgaggatt cgttgaaaaa aaaatttcca ggattccata aaatgaactt aaattgatgg
    30961 ataaatagac tgttagttta ggaataatct ggatgaatgt atcgcgccac acgcgcatta
    31021 ttggtgcaat cagccgg
//
LOCUS       DAJVSD010000023        29751 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.023, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000023 DAJVSD010000000
VERSION     DAJVSD010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 29751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29751
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.023"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..520
                     /locus_tag="OQP62_000902"
     CDS             <1..520
                     /locus_tag="OQP62_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YebB family permuted papain-like enzyme"
                     /protein_id="HCS1720521.1"
                     /translation="STASQCWSNHVGIIIGHNGDDYLVAESRVPLSTVTTLSLFIQRS
                     AGQRYAVRRLCGGLTVEQKLAIMEQVPARLNKFYHTGFKYESSRQFCSKFVFDIYKEA
                     LCIPVGDIETFEELLHSNPDAKLTFWKFWFLGSIPWDRKTVTPASLWQHPNLELISAC
                     GIENPQREAEGE"
     gene            complement(522..1043)
                     /gene="ruvC"
                     /locus_tag="OQP62_000903"
     CDS             complement(522..1043)
                     /gene="ruvC"
                     /locus_tag="OQP62_000903"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005068993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HCS1720522.1"
                     /translation="MSIILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVDDLPSR
                     LKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY
                     AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQM
                     SESRLNLARGRLR"
     gene            complement(1080..1820)
                     /locus_tag="OQP62_000904"
     CDS             complement(1080..1820)
                     /locus_tag="OQP62_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS1720523.1"
                     /translation="MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPD
                     ANPRLRAAVDKALANNMTRDTLNRAIARGVGGDEDSNMETIIYEGYGPGGTAIMIECL
                     SDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAE
                     DVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLLR
                     LIDMLEDCDDVQEVYHNGEISDEVAATL"
     gene            complement(1850..2302)
                     /gene="nudB"
                     /locus_tag="OQP62_000905"
     CDS             complement(1850..2302)
                     /gene="nudB"
                     /locus_tag="OQP62_000905"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HCS1720524.1"
                     /translation="MKDKVYKRPVSVLVVIFAQDTKRVLMLQRRDDPDFWQSVTGSIE
                     EGETALQTAVREVKEEVTIDVAAEQLTLVDCQRTVEFEIFSHLRHRYAPGVMHNTEFW
                     FCLALPHERQVIFTEHLTYQWLDAPDAAALTKSWSNRQAIEEFVINVA"
     gene            complement(2405..4177)
                     /gene="aspS"
                     /locus_tag="OQP62_000906"
     CDS             complement(2405..4177)
                     /gene="aspS"
                     /locus_tag="OQP62_000906"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HCS1720525.1"
                     /translation="MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI
                     VQVFFDPDRADALKLASELRNEFCIQVTGTVRARDAKNVNADMATGEIEVLASSLTII
                     NRADSLPLDANHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDI
                     ETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD
                     EDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAE
                     RRYGSDKPDLRNPMELVDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGAQLSRKQI
                     DDYGNFVKIYGAKGLAYIKVNERAKGLDGINSPVAKFLTADIVEAILERTGAQDGDMI
                     FFGADNKKVVADALGALRLKLGKDLSLTDEDKWAPLWVIDFPMFEDDGEGGLTAMHHP
                     FTAPRDMTASELKTAPEEAVANAYDMVINGYEVGGGSVRIHNGEMQQTVFGILGINEQ
                     EQREKFGFLLDALKYGTPPHVGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTE
                     APSFANQAALTELGIQVVKKAENN"
     gene            4502..5068
                     /locus_tag="OQP62_000907"
     CDS             4502..5068
                     /locus_tag="OQP62_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HCS1720526.1"
                     /translation="MLKLNATTTALVVIDLQEGILPFAGGPYTANEVVARAARLAEKC
                     RANGSPVVMVRVGWSDDYAEALKQPVDAATPAHALPENWWTWPTALGKKDSDLEVTKR
                     QWGAFYGTDLELQLRRRGIDTIILCGISTNIGVESTARNAWELGFNLIIAEDACSAAS
                     SEQHQSSMTHIFPRIGRVRSVEDILNAL"
     gene            5065..5883
                     /locus_tag="OQP62_000908"
     CDS             5065..5883
                     /locus_tag="OQP62_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HCS1720527.1"
                     /translation="MIYIGLPQWSHPKWARLGITSLEEYARHFNCVEGNTTLYALPKA
                     EIVDRWYAQTTDDFRFCFKFPATISHQAALRHCDDLVQAFFTRLAPLETRIGQYWLQL
                     PAAFGPRDLPALWQFLDALPATFTYGVEVRHPCFFDKGEDEQRLNRGLHARGVNRVIL
                     DSRPVHAAHPHSEAVRDAQRKKPKVPVHAVVTASHPMVRFIGSDNMAQNREFFAAWLQ
                     KLPQWRQTTTPFLFLHTPDIAQAPELVNTLWHDLRSVLPEIGTAPSIPQQSSLF"
     gene            5936..6331
                     /locus_tag="OQP62_000909"
     CDS             5936..6331
                     /locus_tag="OQP62_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HCS1720528.1"
                     /translation="MVSALYAVLGALLLMKFSFNVVRLRMQYRVAYGDGGFSELQSAI
                     RIHGNAVEYIPVALVLLLFMEMNGAETWMVHICGIILIAGRLMHYYGFHHRLFRWRRA
                     GMSATWCALLLMVLANLWYMPWELVFSLY"
     gene            6372..7115
                     /gene="cmoA"
                     /locus_tag="OQP62_000910"
     CDS             6372..7115
                     /gene="cmoA"
                     /locus_tag="OQP62_000910"
                     /EC_number="2.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HCS1720529.1"
                     /translation="MSHRDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIIS
                     MIGMLAERFVQPNTQVYDLGCSLGAATLSVRRNIRHEHCRIIAVDNSPAMIERCRRHI
                     DAYKAPTPVEVVEGDIRDITIENASMVVLNFTLQFLEPAERQALLDKIYLGLNPGGAL
                     VLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARL
                     RQAGFEHSELWFQCFNFGSLVALKAGVAA"
     gene            7112..8083
                     /gene="cmoB"
                     /locus_tag="OQP62_000911"
     CDS             7112..8083
                     /gene="cmoB"
                     /locus_tag="OQP62_000911"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HCS1720530.1"
                     /translation="MIEFGNFYQLIAKNHLSHWLETLPAQIAAWQREQQHGLFKQWSN
                     AVEFLPEITPWRLDLLHSVTAESETPLSEGQLKRIDTLLRNLMPWRKGPFSLYGVDID
                     TEWRSDWKWDRVLPHLSDLTGRTILDVGCGSGYHLWRMIGAGAHLAVGIDPTQLFLCQ
                     FEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRRSPLEHLWQLKDQLVN
                     EGELVLETLVVDGDENTVLVPGDRYAQMRNVYFIPSAPALKKWLEKCGFVDVRIADVC
                     VTTTEEQRRTEWMVTESLADFLDPNDRSKTVEGYPAPQRAVLIARKP"
     gene            complement(8319..9066)
                     /gene="cutC"
                     /locus_tag="OQP62_000912"
                     /pseudo
     CDS             complement(8319..9066)
                     /gene="cutC"
                     /locus_tag="OQP62_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460864.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
     gene            complement(9086..9655)
                     /locus_tag="OQP62_000913"
     CDS             complement(9086..9655)
                     /locus_tag="OQP62_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HCS1720531.1"
                     /translation="MANWQHIDELHDISADLPRFTLAFRELSTRLGLQINALEADHIS
                     LRCHQNTTAERWRRGFEQCGELLSENIINGRPICLFKLHEPVCVEHWRFSVIELPWPG
                     EKRYPHEGWEHIEIVLPGEPETLNARALALLSDEGLSQPGIVVKTSSPQGEHERLPNP
                     TLAVTDGRVTVKFHPWSIEAIVASEQAAH"
     gene            9892..11625
                     /gene="argS"
                     /locus_tag="OQP62_000914"
     CDS             9892..11625
                     /gene="argS"
                     /locus_tag="OQP62_000914"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HCS1720532.1"
                     /translation="MNIQALLSEKVSQAMIAAGAPADCEPQVRQSAKVQFGDYQANGM
                     MAVAKKLGMAPRQLAEQVLTHLDLSGIASKVEIAGPGFINIFLEPAFLAEQVQQALTS
                     DRLGVSQPTRQTIVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHHVIRANHVG
                     DWGTQFGMLIAWLEKQQQENAGDMALADLEGFYRDAKKHYDEDETFAERARNYVVKLQ
                     SGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKG
                     LAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVL
                     YYIDSRQHQHLMQAWTIVRKAGYVPDSVPLEHHMFGMMLGKDGKPFKTRTGGTVKLAD
                     LLDEALERARRLVAEKNPDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNML
                     AFEGNTAPYMQYAYTRVLSVFRKADIDEQALASAPVIISEDREAQLAARLLQFEETLT
                     VVAREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDAVRNSRLKLAQLTAKTLKLGL
                     DTLGIETVERM"
     gene            11814..12983
                     /gene="mrdA"
                     /locus_tag="OQP62_000915"
     CDS             11814..12983
                     /gene="mrdA"
                     /locus_tag="OQP62_000915"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR03423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HCS1720533.1"
                     /translation="MTFKDFDAEEKLFLRRVIVAFGVVVVCFGILIFNLYNLQIRQHH
                     YYTTRSNENDIKMLPVAPTRGIIYDRNGIPLVRNVTWYDIAVTPYKIADMDALLKQLT
                     PIVDLSPDDIADFRRALKSSSRYRPVVLKNALTDVEIARFAVNQFHFNGVTINSYQDR
                     QYPYGAELAHVLGYVSKINDNDLKALDKKGLAENYAADHNIGKQGIERYYENDLHGKT
                     GYQEVEVDNHGRIVRLLKDVPPIAGKNIHLTLDLHLQEYIESLLAGQRAAVLVEDPHD
                     GSVLAMVSMPSYDPNPFVKGISYQDYGKLLHDKNLPLINRVTQGLYPPASTVKPYMAM
                     SALLCGIITPQTTFFGAPTWTLPGTQRHYRDWKKTGHGMLDVTKAIEESADTFFY"
     gene            12993..13685
                     /locus_tag="OQP62_000916"
     CDS             12993..13685
                     /locus_tag="OQP62_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000971841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HCS1720534.1"
                     /translation="MMGIDRIDTMLSQFGYGKPTGIDLSEEYDGLLPSRAWKQRVHKK
                     AWYQGDTISVGIGQGYWIATPIQMVKAMVALINNSKVIAPHLLLNEESGKTVVPYRPS
                     GTPAQIADPASPYWGLVRQAMYGMANAPNGTGYKFFHTAPYGIAAKSGTSQVFSLKEN
                     QTYNAKMIPIRLRDHVFYTAFAPYKNPKVAIALILENGGSDGVTAAPIMRKILDHLFD
                     PQADTTQSGQAP"
     gene            complement(13739..14878)
                     /locus_tag="OQP62_000917"
     CDS             complement(13739..14878)
                     /locus_tag="OQP62_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 105 protein"
                     /protein_id="HCS1720535.1"
                     /translation="MMVYPVKHSPLLRQPEHFIARDELKALVQKVTHNLVNIKDETGE
                     FLLRLDDGRVIDTKGWAGWEWTHGVGLYGMYHYYQQTGDQTMRKIIDDWFADRFAEGA
                     TTKNVNTMAPFLTLAYRYEETRNPAYLPWLETWAEWAMNEMPRTDYGGMQHITLAEEN
                     HQQMWDDTLMMTVLPLAKIGKLLNRPEYVEEATYQFLLHVQNLMDKETGLWFHGWSYD
                     GHHNFANARWARGNSWLTIVVPDFLELLDLPENNAVRRYLVQVLNAQIAALAKCQDES
                     GLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVERHYAQVAEKAIRGIVKHISPEG
                     ELLQTSFGTGMGHDLDFYRHIPLTSMPYGQAMAMLCLTEYLRNYF"
     gene            complement(15115..15507)
                     /gene="flhe"
                     /locus_tag="OQP62_000918"
     CDS             complement(15115..15507)
                     /gene="flhe"
                     /locus_tag="OQP62_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlhE"
                     /protein_id="HCS1720536.1"
                     /translation="MRKWLALLLFPLTVQAAGEGAWQDSGMGVTLNYRGVSASSSPLS
                     ARQPVSGVMTLVAWRYELNGPTPAGLRVRLCSQSRCVELDGQSGTTHGFAHVPAVEPL
                     RFVWEVPGGGRLIPALKVRSNQVIVNYR"
     gene            complement(15507..17585)
                     /gene="flhA"
                     /locus_tag="OQP62_000919"
     CDS             complement(15507..17585)
                     /gene="flhA"
                     /locus_tag="OQP62_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HCS1720537.1"
                     /translation="MANLVAMLRLPSNLKSTQWQILAGPILILLILSMMVLPLPAFIL
                     DLLFTFNIALSIMVLLVAMFTQRTLDFAAFPTILLFTTLLRLALNVASTRIILMEGHT
                     GAAAAGKVVEAFGHFLVGGNFAIGIVVFIILVIINFMVITKGAGRIAEVGARFVLDGM
                     PGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVI
                     NVVGGLLVGVLQHGMSMGSAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQD
                     VGEQMVGQLFSNPRVMLLAAAVLGLLGMVPGMPNLVFLLFTAALLGLAWWLRGREEKA
                     PEEPQPVKMPENNSVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRK
                     KFAQDMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP
                     GEKTVDPAFGLDAIWIESALKEQAQIQGFTVVEASTVVATHLNHLIGQFSAELFGRQE
                     AQQLLDRVSQEMPKLTEDLVPGVVTLTTLHKVLQNLLAEKVPIRDMRTILETLAEHAP
                     LQSDPHELTAVVRVALGRAITQQWFPGNEEVQVIGLDTALERLLLQALQGGGGLEPGL
                     ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRH
                     IRMTATIGGK"
     gene            complement(17578..18729)
                     /gene="flhB"
                     /locus_tag="OQP62_000920"
     CDS             complement(17578..18729)
                     /gene="flhB"
                     /locus_tag="OQP62_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FlhB"
                     /protein_id="HCS1720538.1"
                     /translation="MAEESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVC
                     IIWFGGESLARQLAGMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVL
                     VALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVT
                     GFYLWNHWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLK
                     KLRMSRQDIRDEFKESEGDPHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVA
                     LQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPG
                     QLYAAVAEVLAWVWQLKRWRLAGGQRPPQPENLPVPEALDFMNEKNTDG"
     gene            complement(18923..19567)
                     /gene="cheZ"
                     /locus_tag="OQP62_000921"
     CDS             complement(18923..19567)
                     /gene="cheZ"
                     /locus_tag="OQP62_000921"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase CheZ"
                     /protein_id="HCS1720539.1"
                     /translation="MMQPSIKPADEGSAGDIIARIGSLTRMLRDSLRELGLDQAIAEA
                     AEAIPDARDRLDYVVQMTAQAAERALNSVEASQPHQDAMEKEAKALTQRWDEWFDNPI
                     ELSDARELVTDTRQFLRDVPGHTSFTNAQLLDIMMAQDFQDLTGQVIKRMMDVIQEIE
                     RQLLMVLLENIPEQSARPKRENESLLNGPQVDTSKAGVVASQEQVDDLLDSLGF"
     gene            complement(19578..19967)
                     /gene="cheY"
                     /locus_tag="OQP62_000922"
     CDS             complement(19578..19967)
                     /gene="cheY"
                     /locus_tag="OQP62_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002210873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HCS1720540.1"
                     /translation="MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALN
                     KLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAG
                     ASGYVVKPFTAATLEEKLNKIFEKLGM"
     gene            complement(19985..21034)
                     /gene="cheB"
                     /locus_tag="OQP62_000923"
     CDS             complement(19985..21034)
                     /gene="cheB"
                     /locus_tag="OQP62_000923"
                     /EC_number="3.1.1.61"
                     /EC_number="3.5.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000036372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate methylesterase/protein
                     glutamine deamidase"
                     /protein_id="HCS1720541.1"
                     /translation="MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDL
                     IKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAI
                     DFVTKPQLGIREGMLAYSEMIAEKVRTAARARIAAHKPMAAPTTLKAGPLLSSEKLIA
                     IGASTGGTEAIRHVLQPLPLSSPAVIITQHMPPGFTRSFAERLNKLCQISVKEAEDGE
                     RVLPGHAYIAPGDKHMELARSGANYQIKIHDGPPVNRHRPSVDVLFHSVAKHAGRNAV
                     GVILTGMGNDGAAGMLAMYQAGAWTIAQNEASCVVFGMPREAINMGGVSEVVDLSQVS
                     QQMLAKISAGQAIRI"
     gene            complement(21031..21897)
                     /gene="cheR"
                     /locus_tag="OQP62_000924"
     CDS             complement(21031..21897)
                     /gene="cheR"
                     /locus_tag="OQP62_000924"
                     /EC_number="2.1.1.80"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HCS1720542.1"
                     /translation="MTSSLPSGQTSVLLQMTQRLALSDAHFRRICQLIYQRAGIVLAD
                     HKRDMVYNRLVRRLRALGLDDFGRYLSMLEANQNSVEWQAFINALTTNLTAFFREAHH
                     FPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVL
                     EKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQQLANYVEFSSVNLLEKQY
                     NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENFSNLVREFSLR
                     GQTVYALSKDKA"
     gene            complement(22058..23719)
                     /gene="tar"
                     /locus_tag="OQP62_000925"
     CDS             complement(22058..23719)
                     /gene="tar"
                     /locus_tag="OQP62_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein II"
                     /protein_id="HCS1720543.1"
                     /translation="MFNRIRVVTMLMMVLGVFALLQLVSGGLLFSSLQHNQQGFVISN
                     ELRQQQSELTSTWDLMLQTRINLSRSAARMMMDASNQQSSAKTDLLQNAKTTLAQAAA
                     HYANFKNMTPLPAMAEASANVDEKYQRYQAALAELIQFLDNGNMDAYFAQPTQGMQNA
                     LGEALGNYARVSENLYRQTFDQSAHDYRFAQWQLGVLAVVLVLILMVVWFGIRHALLN
                     PLARVITHIREIASGDLTKTLTVSGRNEIGELAGTVEHMQRSLIDTVTQVCEGSDAIY
                     SGTSEIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSASET
                     ARHGGKVVDGVVNTMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGR
                     GFAVVAGEVRNLASRSAQAAKEIKALIEDSVSRVDTGSVLVESAGETMTDIVNAVTRV
                     TDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQ
                     AVSAFRLASRPLAVNKPEMRLSVDAQSGNTPRPLAAGDDANWETF"
     gene            complement(23956..24459)
                     /gene="cheW"
                     /locus_tag="OQP62_000926"
     CDS             complement(23956..24459)
                     /gene="cheW"
                     /locus_tag="OQP62_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HCS1720544.1"
                     /translation="MTGMSNVSKLAGEPSGQEFLVFTLGNEEYGIDILKVQEIRGYDQ
                     VTRIANTPAFIKGVTNLRGVIVPIVDLRVKFCEGDVEYDDNTVVIVLNLGQRVVGIVV
                     GGVSDVLSLTAEQIRPAPEFAVTLSTEYLTGLGALGERMLILVNIEKLLNSEEMALLD
                     IAASHVA"
     gene            complement(24480..26495)
                     /gene="cheA"
                     /locus_tag="OQP62_000927"
     CDS             complement(24480..26495)
                     /gene="cheA"
                     /locus_tag="OQP62_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheA"
                     /protein_id="HCS1720545.1"
                     /translation="MSMDISDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIF
                     RAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQL
                     DAYKNSEEPDAASFEYICNALRQLALEAKGETTPAVVETAALSAAIQEESVAETESPR
                     DESKLRIVLSRLKANEVDLLEEELGNLATLTDVVKGADSLSATLDGSVAEDDIVAVLC
                     FVIEADQIAFEKVVTAPVEKAQEKTEVAPVASPAVVAPAAKSAAHEHHAGREKPARER
                     ESTSIRVAVEKVDQLINLVGELVITQSMLAQRSNELDPVNHGDLITSMGQLQRNARDL
                     QESVMSIRMMPMEYVFSRFPRLVRDLAGKLGKQVELTLVGSSTELDKSLIERIIDPLT
                     HLVRNSLDHGIEMPEKRLEAGKNVVGNLILSAEHQGGNICIEVTDDGAGLNRERILAK
                     AMSQGMAVNENMTDDEVGMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEI
                     QSKQGSGTTIRILLPLTLAILDGMSVRVAGEVFILPLNAVMESLQPREEDLHPLAGGE
                     RVLEVRGEYLPLVELWKVFDVDGAKTESTQGIVVILQSAGRRYALLVDQLIGQHQVVV
                     KNLESNYRKVPGISAATILGDGSVALIVDVSALQGLNREQRMAITAA"
     gene            complement(26500..27429)
                     /gene="motB"
                     /locus_tag="OQP62_000928"
     CDS             complement(26500..27429)
                     /gene="motB"
                     /locus_tag="OQP62_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HCS1720546.1"
                     /translation="MKNQAHPIVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLV
                     MWLISISSPKELIQIAEYFRTPLATAVTGGNRIANSKSPIPGGGDDYTQQQGEVEKQP
                     NIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRP
                     MFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADR
                     ANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQAEQAILH
                     ENAESQNEPVSVLQQPAAAPPASVPTSPKAEPR"
     gene            complement(27426..28313)
                     /gene="motA"
                     /locus_tag="OQP62_000929"
     CDS             complement(27426..28313)
                     /gene="motA"
                     /locus_tag="OQP62_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HCS1720547.1"
                     /translation="MLILLGYLVVIGTVFGGYVMTGGHLGALYQPAELVIIGGAGMGA
                     FIVGNNGKAIKGTMKAIPLLFRRSKYTKSMYMDLLALLYRLMAKSRQQGMFSLERDIE
                     NPKESEIFASYPRILADAVMLDFIVDYLRLIISGNMNTFEIEALMDEEIETHESEAEV
                     PANSLAMVGDSLPAFGIVAAVMGVVHALASADRPAAELGALIAHAMVGTFLGILLAYG
                     FISPLATVLRQKSAETTKMMQCVKITLLSNLNGYAPPIAVEFGRKTLYSSERPSFIEL
                     EEHVRAVRNPNQQQTTEEA"
     gene            complement(28441..29019)
                     /gene="flhC"
                     /locus_tag="OQP62_000930"
     CDS             complement(28441..29019)
                     /gene="flhC"
                     /locus_tag="OQP62_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar transcriptional regulator FlhC"
                     /protein_id="HCS1720548.1"
                     /translation="MSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLY
                     KELRGSPPPKGMLPFSTDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLY
                     LEQCPQPPEGSLLALTRAWTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLC
                     QPPSRAVKRRKLSRDAADIIPQLLDEQIEQAV"
     gene            complement(29022..29363)
                     /gene="flhD"
                     /locus_tag="OQP62_000931"
     CDS             complement(29022..29363)
                     /gene="flhD"
                     /locus_tag="OQP62_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310629.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar transcriptional regulator FlhD"
                     /protein_id="HCS1720549.1"
                     /translation="MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMAN
                     TLGALTLPQMVKLAETNQLVCHFRFDDHQTITRLTQDSRVDDLQQIHTGIMLSTRLLN
                     EVDDTARKKRA"
BASE COUNT         6799 a         8422 c         7599 g         6931 t
ORIGIN      
        1 atccaccgct tcacagtgct ggagcaacca tgttgggatt attattggtc ataatggtga
       61 tgactatctg gtggcggaaa gtcgcgtccc cctctcaacc gtcaccacgc tgtcactgtt
      121 tatacaacgt tcagccggac aacgttacgc ggttcgtcgc ctgtgcggcg gcctgacggt
      181 cgagcagaaa ctcgccatca tggagcaggt tcccgcccgg ctgaataagt tttatcacac
      241 ggggtttaaa tacgagtcat cgcgccagtt ctgctcgaaa tttgtgtttg atatctataa
      301 agaagcattg tgtattccgg taggcgatat tgagacattc gaagaattac ttcacagcaa
      361 tcctgatgcg aaactcacct tctggaaatt ctggttttta ggttcaatcc cgtgggatcg
      421 taagacggtg acgcccgcca gcctgtggca acatcccaat ttagaattaa ttagcgcctg
      481 tggaattgaa aaccctcaac gcgaggctga gggagaataa tttagcgcaa ccttccccgc
      541 gccagattga gtcggctctc gctcatttgc atcgcgttct ggctaacatg gcaatgcgta
      601 atggcgatag ccagcgcatc tgcggcgtct gcctgcgggt tagcggggag cttcagcaac
      661 gtacgaacca tatgctgtac ctggcttttc tccgcgctac caataccgac gacagtttgc
      721 ttcacctgac gcgccgcgta ttcaaacacg ggcagttcct ggttgaccgc ggcgacaatc
      781 gctacgccgc gcgcctgtcc cagcttgagg gctgaatcgg cattcttcgc cataaacact
      841 tgttcgatag caaaatagtc cggctggaac tgcgtgatga tttccgtcac gcctgcgtat
      901 atgagcttca aacgagacgg caaatcatcg actttggtac gaatacatcc gctgcccaga
      961 taggtcagtt gtctgcctac ctggcggata acgccataac cggtaatacg cgagccgggg
     1021 tcaataccga gaataatcga cacgctatac cccctgcccg ccggcgttta gcagcaccat
     1081 tacagggtcg ccgccacctc atcagagatc tcaccgttat ggtagacttc ctgaacatcg
     1141 tcacagtctt ccagcatatc gataagacgt agcagtttcg gcgcggtttc cgcatccata
     1201 tccgctttgg ttgacgggat catggacact tcggcgctgt ccgctttcag acccgccgct
     1261 tccagcgcgt cacgcacttt gcccatctct tcccaggcag tgtaaacatc aatcgcgcca
     1321 tcatcatagg tcacaacatc ttccgcgcca gcttccagtg cggcttccat gatggtgtct
     1381 tcatcgcctt tctcaaagga gatgacccct ttcttactga acaggtacgc cactgagcca
     1441 tcggtaccca gattaccgcc gcacttgctg aaagcatgac gcacttccgc tacggtacgg
     1501 ttacggttgt cactcaaaca ctcaatcata atggccgtgc cgccaggacc ataaccttca
     1561 tagatgatgg tttccatgtt cgagtcttca tcaccaccca caccgcgagc gatggcacgg
     1621 ttcagagtgt cgcgggtcat gttgttggcc agcgctttat ctacagccgc gcgcagacgc
     1681 gggttggcat ccggatcgcc gccgcccaat ttagctgccg ttaccagttc acgaataatt
     1741 ttagtgaaga ttttaccgcg cttggcatct tgcgcagctt tacgatgtct ggtgttggcc
     1801 catttactat gacctgccat aaatatttcc tcaaaaaaag cgcgcctttt caggcgacgt
     1861 taatgacaaa ctcttcaatc gcttgccggt tactccagga cttggtaagc gccgccgcgt
     1921 caggcgcatc aagccactgg tacgttagat gttcagtgaa tatcacctgc cgctcatgcg
     1981 gtaacgcaag gcagaaccag aattctgtat tgtgcatgac gcccggcgca tagcgatgac
     2041 gtaaatgtga aaaaatttca aactccaccg tacgttggca gtcgactaag gtcagttgct
     2101 ctgccgcaac atcaatcgtg acctcctctt tgacttcacg cacggcggtc tgcaacgcgg
     2161 tctccccttc ttctatgctg ccagtcactg actgccaaaa atccgggtcg tcgcgtcgct
     2221 gcaacattag cacccgtttc gtatcctgcg cgaaaataac caccaggacc gaaacggggc
     2281 gcttgtacac tttatccttc acgcgacctc gttgttggct gttgggtgac gccgcgcatt
     2341 gatgagactc ccccttgcgg gccgccgcga tatcacgcga atgatgtcgt gtacattgtt
     2401 catatcagtt attctcggct ttcttcacaa cctgaatccc caactccgtc aacgctgcct
     2461 ggttggcgaa actcggcgct tcagtcatca gacacgcggc ggcggtcgtt ttcgggaagg
     2521 cgataacatc acgaatattg tcggtgccgg tcaacagcat ggtcagacgg tccagaccaa
     2581 acgccaggcc cacgtgcggc ggcgtaccgt atttcaacgc atccaacagg aagccgaact
     2641 tctcgcgctg ctcctgctca ttgataccga gaataccaaa tacggtttgc tgcatttcac
     2701 cgttgtgaat acgcaccgaa ccgccaccca cttcatagcc gttaatcacc atatcgtaag
     2761 cgttagcgac ggcttcttcc ggggcagttt tcagttcaga cgccgtcatg tcacgcgggg
     2821 cggtgaacgg atggtgcatc gcggtcagac cgccttcgcc gtcgtcttcg aacatcggga
     2881 agtcaatcac ccacagcggc gcccatttgt cttcgtcggt caggctcagg tctttgccca
     2941 gtttcagacg cagcgcgccc agcgcatcgg caaccacttt tttgttatct gcgccgaaga
     3001 agatcatgtc gccgtcctgc gcgccggtac gttcaaggat agcctcgacg atgtcggcgg
     3061 tcaggaactt ggccaccgga ctgttaatcc cgtccagacc tttcgcgcgc tcgttaactt
     3121 tgatatatgc cagtcctttc gcgccgtaga tcttaacaaa gttaccgtaa tcgtcgatct
     3181 gcttacggct aagctgtgcg ccgccaggca cacgcagcgc tgccacgcgg cctttcggat
     3241 cgttagccgg gcccgcgaag accgcgaact ctaccgattt cagcaggtca gcgacatcta
     3301 ccagctccat cgggttacgc aggtctggct tgtcggaacc gtagcgacgt tccgcttcgg
     3361 caaacgtcat gaccgggaaa tcccccagat ccacgccttt cacttccagc cacaaatggc
     3421 gcaccagcgc ttccatcact tcgcgcacct gtggcgcggt catgaaggag gtctcgacgt
     3481 cgatctgagt aaactccggc tgacggtcag cacgtaagtc ttcatcacgg aagcatttga
     3541 ctatctgata gtaacggtcg aaaccggaca tcatcaggag ctgtttgaac agctgcggcg
     3601 actgcggcaa cgcatagaat ttacctttgt gtacgcggga cggtaccagg taatcgcgcg
     3661 cgccttccgg ggtcgctttg gtcagcatcg gggtttcaat atcaaggaaa ccgtgatcgt
     3721 ccataaaacg acgcaccagg ctggtaattt tggcgcgagt tttcaggcgc tgcgccattt
     3781 ccggacgacg caaatccaga tagcggtact tgagacgcgc ctcttcggta ttaacgtggt
     3841 tagcgtcaag cggcagtgag tctgcgcggt tgatgatagt gagagaggac gccagcactt
     3901 caatttcgcc ggtcgccata tccgcattga cgtttttcgc gtcacgcgca cgcacggtgc
     3961 ccgtaacctg aatgcagaac tcattacgca gttcagaggc cagctttaac gcgtccgcac
     4021 gatccggatc gaagaacacc tgcacaatac cttcgcggtc gcgcatatcg ataaagatca
     4081 ggctgccaag atcacgacga cggttgaccc aaccacacag agtcacctgc tgccccacgt
     4141 gggacagacg tagctgtccg caatattctg tacgcatgag atatccctta acttagccgc
     4201 aggcggattg ttgcctgcca tgcaggcgac gaagtcgcag ctttagctgt atgtcacaac
     4261 tggatgaaaa aaggcggcta ttatactgga aattctgccg cacgataaga gtcaatccag
     4321 catgggagcg ataacttgcc cgtttcatgc ggtatcgaca cttggttcat actgactgta
     4381 cccgggtttt tcacgcgggt attgcgtatg ctcacaaaaa ttaacaatat ttgtcgccgc
     4441 tttcctcttt aatcgcgctt aaggtgtagt gaaatccgct atttttagga gagtgattat
     4501 catgctgaaa ctcaacgcga ccacaaccgc cctggtggtt attgatttac aggaaggaat
     4561 tcttccgttt gccggcggcc cgtatacggc aaatgaggtg gtcgcccgcg ccgcgcggct
     4621 ggcggaaaag tgtcgcgcca acggctcgcc cgtggttatg gtacgcgttg gatggtctga
     4681 tgattatgcc gaagcgttaa aacagccggt ggatgccgca acgcctgcgc acgcgttgcc
     4741 ggaaaactgg tggacctggc ctacggcatt gggtaaaaag gacagcgatc tggaagtgac
     4801 taaacgccag tggggcgcgt tttacggcac cgacctggaa ttacagcttc gccgccgggg
     4861 tatcgacacc atcatattgt gcggaatctc aaccaatatc ggcgtcgaat ccacagcgcg
     4921 taacgcctgg gagttgggat ttaaccttat tattgccgaa gatgcctgta gcgccgccag
     4981 cagtgagcag catcagagca gtatgacgca tattttcccg cgcattggcc gggtacgcag
     5041 cgtagaggat attttaaacg ccttatgatc tacattggct tgccgcaatg gtcgcacccg
     5101 aaatgggcgc ggctcggcat caccagtctg gaagagtatg cccgccactt taactgcgtg
     5161 gagggcaaca ccacgcttta cgcgctgccg aaagcggaaa ttgtcgatcg ctggtatgcg
     5221 caaactacgg acgatttccg tttttgcttt aaatttcccg ccaccatttc tcaccaggcc
     5281 gctctgcgcc attgcgacga tctggtacag gcgtttttta cccgcctggc gccgctggaa
     5341 acgcgtattg gccaatactg gctgcagttg cccgccgcct ttggaccgcg cgatctcccc
     5401 gccttatggc agtttcttga tgcgctcccc gccacgttta cctatggcgt agaagttcgt
     5461 catccgtgtt tttttgacaa gggtgaggat gaacagcggc tcaatcgcgg gttacacgcg
     5521 cgcggcgtaa accgcgtgat cctggatagt cgtccggtac atgccgccca tccccacagc
     5581 gaggccgtcc gtgacgcgca gcgaaaaaaa cccaaagtcc cggtacatgc ggtcgtgacg
     5641 gccagccatc cgatggtgcg ttttatcggt agcgataata tggcgcaaaa ccgtgagttt
     5701 ttcgctgcct ggttgcagaa actcccgcag tggcggcaga ccaccacgcc ttttctgttt
     5761 ttacatactc cggatatcgc gcaggcgccg gaactggtga atacgctttg gcatgattta
     5821 cgcagcgtct taccggaaat cggcactgct ccgtccattc cacagcaatc ttctcttttc
     5881 tgaaaatgcc ccctatcata gacagtgcca tcagccattt taaaagggag tttgtatggt
     5941 aagcgcgctg tatgccgttt tgggtgcgtt attattaatg aagttctctt ttaatgtcgt
     6001 tcgcttacga atgcagtacc gtgtcgccta tggcgacggc ggttttagcg aattgcaaag
     6061 cgccatccgt attcatggca acgcggtgga atatattcct gtcgcgctgg tgctgctgct
     6121 gtttatggaa atgaacggcg ccgaaacgtg gatggtgcat atctgcggca tcattttaat
     6181 cgccggtcgg ctgatgcatt attacggttt tcaccaccgc ctgttccgct ggcggcgggc
     6241 ggggatgagc gcgacctggt gcgcattgtt gctgatggtg ctggcaaacc tgtggtatat
     6301 gccctgggag ttggttttct ccctgtatta gcgcacaata tgcgccttta tttttcccgg
     6361 atgtatacgt tatgtctcac cgcgacacgc ttttttctgc gcctatcgcc cgtctcggcg
     6421 actggacttt tgatgaacga gtagccgaag ttttccccga catgattcag cgttcggtac
     6481 caggctactc caacatcatc tccatgatcg gcatgttagc tgaacgcttt gtgcagccga
     6541 acacgcaggt ctacgatctg ggctgctcgc tgggtgccgc gacgctgtct gttcggcgta
     6601 atatccgcca tgagcattgt cgcattatcg ccgtcgataa ctccccggcc atgattgaac
     6661 gctgccgccg tcatattgat gcgtataaag cgcctacgcc ggttgaagtc gttgaaggcg
     6721 atatccgcga tatcactatt gaaaacgcct cgatggtggt gctgaatttt accctacaat
     6781 tccttgaacc tgccgaacgc caggcattgc tggataagat ttacctgggg ttgaatcccg
     6841 gcggcgcgct ggtactgtcg gaaaaattta gctttgaaga cgcgaaagtg ggcgagctgt
     6901 tattcaacat gcaccacgat tttaaacgcg ctaatgggta cagcgaactg gagatcagcc
     6961 aaaagcgcag tatgctggaa aacgtgatgc tcaccgactc ggtggaaaca cataaagcgc
     7021 gcctgcgtca ggcgggtttc gaacacagcg aactgtggtt ccagtgcttt aacttcgggt
     7081 cgcttgtcgc gttaaaagcc ggagttgccg catgatcgag tttggtaact tttatcagct
     7141 cattgctaaa aatcatctct cccactggct ggaaacattg cccgcgcaga ttgccgcctg
     7201 gcaacgcgag cagcagcatg gcttgtttaa acagtggtcg aacgcggtag aatttttacc
     7261 ggaaattacg ccctggcggc tggatttact gcacagcgtc acggcggaaa gcgaaacgcc
     7321 gctcagcgaa ggtcagctaa agcgtattga tacattgctg cgtaatctga tgccgtggcg
     7381 taaaggcccg ttctcgcttt atggcgtaga tattgatacc gaatggcgct cagactggaa
     7441 gtgggatcgc gtactgccgc atctgtcaga tttaaccggc cggacgatcc ttgatgtcgg
     7501 ctgcggcagc ggctatcacc tgtggcggat gattggcgcg ggcgcacatc tggcggtcgg
     7561 catcgatcct acacagcttt tcctctgcca atttgaggcg gtgcgtaaac tgttgggtaa
     7621 cgatcagcgc gcgcatctgc tgccgttggg cattgaacaa ctcccggcgc tgaaagcatt
     7681 tgataccgtc ttttcaatgg gggtgcttta tcaccgtcgc tcgccgctgg agcatctgtg
     7741 gcaattaaaa gatcagttgg tcaacgaggg tgagctggta ctggaaacgc tggtcgtcga
     7801 cggcgacgaa aataccgtac tggtgccggg tgaccgctac gcgcagatgc gtaacgtcta
     7861 ttttattcct tccgcgccgg cattaaaaaa atggctggaa aaatgcggct ttgttgatgt
     7921 gcgtatcgct gacgtttgcg tcactaccac cgaagagcag cgccgtaccg aatggatggt
     7981 taccgagtcg ctggccgatt ttcttgaccc gaacgatcgc agcaagacgg tggaaggcta
     8041 tcccgccccg cagcgcgcgg tgctgattgc gcgtaaaccg tgatggattg ccgaatgacc
     8101 gttacgtata gcaccgtttc tccaaaatag ttcaagttgc agcaaggcgg caacgcagca
     8161 aatccccggg aacgtaggta gctacgtgac cggggtgcgc gaggcggcca acgctgctgc
     8221 ggcttgaaat atgaaggaga aaaaaaggcc cctgttgaat tggcaggggc ctggtacgag
     8281 caagcatcat attgggcgac atgatgcaac ggtaaaaatc atttggcctg atggcgaaca
     8341 atgattcctt tcattctcag cgaccgccgc accctctacc ctatagcgag aatactcgtc
     8401 cgcctgtata tcggcagaca tcgataaccc ctgattgcga tagcgcatcg gcgaaggcag
     8461 taagactccg gcggaactgt gtacttcccg tactccggca tcgaggaaat tctgcaggtt
     8521 atttgcacga acccccgcac cagccataat gattggagca tccccctggg caataagttc
     8581 cataattatt gataaacctt gcgccgcatc ggctttttgc ccggaagtca gtactcttgc
     8641 tacgcctgcg tcagccagat tctttagcgc attgaaggga ttagcgcaca tatcgaaggc
     8701 gcggtggaat gtcaccgcca gcggcccggc cgccgccatt attttttcca ttcgcgacat
     8761 atcgacatcc ccatcaacgg tcaacacgcc agtaaccagc ccgggaaacc ccaactctct
     8821 gacgagacgg atatcttcca gcatggcggc aaattcgccg tcagtgtagt aaaaatctcc
     8881 gccgcgagga cgaataatcg gatgtacggg aatcgtaata tgctcgcgta cgctgcgtaa
     8941 gatgccgaaa gaaggcgtaa gccccccttc tttcggcgcg gcgcacagtt cgatacgatc
     9001 cgcgccgttt cgctgcgcgg tgagcgcgca ttccatgctg taacaacaga tctcaagtaa
     9061 cgccatattc actccgctcg gcaggttaat gggccgcctg ttcgctggcg acaatcgctt
     9121 caatcgacca tggatgaaat tttaccgtga cgcggccatc ggtcacagcc agcgtagggt
     9181 ttggcaaacg ttcatgctcg ccctgtggcg aactggtttt aaccacgatc cccggctgac
     9241 taagcccctc atccgacaac aacgccaggg ccctcgcgtt caaggtctcc ggctcgccgg
     9301 gcagcacgat ttcaatatgc tcccaccctt cgtgtggata gcgtttttct cccggccacg
     9361 gtaattcaat aacagaaaac cgccagtgtt ccacacatac cggttcatgc agtttaaaca
     9421 gacaaatcgg cctgccgttg atgatatttt ccgacagtag ctcgccgcat tgttcaaaac
     9481 cgcgacgcca acgctccgcc gtcgtattct ggtgacagcg caatgaaatg tgatcggcct
     9541 caagggcgtt aatctgcaga ccaaggcgag tggaaagttc tctgaacgcc agagtgaatc
     9601 gcggtaaatc tgcggaaata tcatgcagtt catcaatgtg ttgccagttc gccatatcag
     9661 gacgctcttc ttgctgtgaa aaccgctaat ttacgctgtt gcgccccggc aaccaacctt
     9721 tgatttgatt gggcgtttat tgaatgctta tgcagattat tgttgcgtat atttcaggcg
     9781 acgcgccgcg cgcgcaatgc tgacgccaac gggcatttgc agtatactcc cgccctaatt
     9841 cttaaactgg cgcgggcaat acagtccgct tcataaacgt aaggtattcc ggtgaatatt
     9901 caggctcttc tctcagaaaa agttagtcag gccatgattg ctgcaggcgc gcctgcagat
     9961 tgcgagcccc aggttcgtca gtcagccaaa gttcagttcg gcgactatca ggccaacggc
    10021 atgatggcag ttgcgaaaaa actgggtatg gccccccgac aacttgcaga gcaggtgctg
    10081 actcatctgg atctcagcgg catcgccagc aaggttgaaa tcgccggccc tggctttatc
    10141 aatattttcc tcgaaccggc ttttctcgct gaacaggtgc aacaggcgct gacctccgat
    10201 cgtctgggcg tttctcagcc gactcgccag acgattgtcg tcgactactc cgcgcccaac
    10261 gtcgcgaaag agatgcacgt tggtcatcta cgctccacga tcattggcga tgcggcagtg
    10321 cgcacgctgg agtttctggg ccatcatgtt attcgcgcta accacgtcgg cgactggggc
    10381 acccagttcg gtatgcttat cgcttggctg gaaaaacagc agcaggaaaa cgcgggcgac
    10441 atggcgctgg cggatctcga aggattttac cgcgatgcga aaaaacatta tgacgaagat
    10501 gaaacgtttg ccgagcgcgc gcgtaactac gtcgtcaaat tgcagagcgg tgatacctat
    10561 ttccgtgaga tgtggcgtaa gctggttgat atcacgatga cgcaaaacca gatcacctat
    10621 gatcgtctga acgtcactct gacgcgtgac gatgtgatgg gcgaaagtct gtataatccg
    10681 atgctgccgg gcatcgtcgc cgatctgaaa gccaaaggcc tggcggttga aagcgaaggc
    10741 gcaacggtgg ttttccttga tgagtttaaa aacaaggaag gcgacccgat gggcgtcatt
    10801 attcagaaga aagatggcgg ttatctgtat accactaccg atatcgcctg cgccaaatac
    10861 cgttacgaaa cgctgcacgc cgaccgcgtg ctctactaca ttgactcccg tcagcaccag
    10921 cacctgatgc aggcctggac cattgtgcgt aaagccggtt atgtgccgga ttccgttccg
    10981 ctggaacacc acatgttcgg catgatgttg ggtaaagacg gtaaaccgtt taaaactcgc
    11041 acgggcggta cggtgaaact ggcggacctg ctggatgagg cgctggagcg cgcgcgtcgt
    11101 ctggtggcgg agaagaaccc ggatatgccg gctgacgagc tggaaaaact ggctaacgcc
    11161 gtcggtattg gcgcggtgaa atacgccgat ctgtcaaaaa accgcaccac tgactatatc
    11221 ttcgactggg ataatatgtt ggctttcgaa ggcaataccg caccttatat gcagtatgcc
    11281 tatacgcgtg tgctgtctgt tttccgtaaa gcggacatcg acgagcaggc gctggcgagc
    11341 gcgccggtta tcattagcga agatcgcgaa gcgcagctcg ctgcccgtct gctgcagttt
    11401 gaagaaaccc tgacggtggt cgcgcgtgaa ggtacgccgc acgtcatgtg cgcgtatctg
    11461 tatgacgtcg ccgggctgtt ctccggcttc tacgagcact gccctattct cagcgccgag
    11521 aatgacgcgg ttcgcaatag ccgcctaaaa ctggcgcaac tgacggcgaa gacgctgaaa
    11581 ctgggtctgg atacgttggg tatcgaaacc gtagaacgca tgtaaacgcg ccgtcgttaa
    11641 catcatcagg cctgactccg ggtaacggac tcaggccttt ttattgccac agcggtatat
    11701 ctgtaacaaa tcacaaggaa tgacacattt ctatagagag atggaacatc ttttacctgt
    11761 gctggcgctg accgccccgt atcattaggc ggcggattgt tcaggtacag gtaatgactt
    11821 ttaaagactt tgatgcggaa gagaaactct tcctgagacg tgtgattgtg gcgtttggtg
    11881 tagtggttgt ctgctttggt atcctgatct tcaacctcta taacttgcaa atccgccagc
    11941 accactacta caccacccgt tcgaatgaga acgatatcaa gatgctaccc gtcgcgccca
    12001 cgcgcggcat catttacgat cgcaacggca ttccgctggt gcgtaacgta acctggtatg
    12061 atatcgcggt tacgccctat aaaattgccg atatggatgc gctgctaaaa cagctcaccc
    12121 ctattgttga tctctccccc gacgatatcg ccgactttcg ccgcgcgcta aaatccagta
    12181 gccgctatcg tccggtagtg ctcaaaaacg cgctaacgga tgttgaaatc gcacgctttg
    12241 cggtcaatca gtttcatttc aacggcgtca cgatcaatag ctatcaggat cggcagtatc
    12301 cttacggcgc ggagctggcg catgttctcg gttacgtgtc aaagataaac gataacgacc
    12361 ttaaagcgct ggataaaaaa gggctggcag agaattacgc ggcggaccat aacatcggta
    12421 aacaggggat tgagcgttac tacgaaaacg atcttcatgg caaaaccggt tatcaggagg
    12481 tcgaggtgga taatcacggg cgtattgtcc gcctgctgaa agacgttcct cccatcgcgg
    12541 gtaagaacat tcacctgacg ttggatctcc atttacaaga gtacattgaa agtttgctgg
    12601 ccgggcagcg tgctgccgta ctggttgaag atccgcacga tggttcagtg ctagcgatgg
    12661 tatctatgcc cagctacgac ccgaacccct ttgtaaaagg cattagctat caggattacg
    12721 gcaaactgct gcacgataaa aatctgccgc tgatcaaccg cgtgacgcaa gggctttatc
    12781 ccccggcgtc aacggttaaa ccctatatgg cgatgtccgc gctgttatgc gggattatta
    12841 cgccgcaaac caccttcttt ggcgcgccaa cctggacgct tcccggcacg cagcgtcatt
    12901 accgggactg gaaaaaaacc ggacacggta tgctggatgt cactaaagcg attgaggaat
    12961 ctgcggatac ctttttctat taggtcgctt atatgatggg tattgaccgt atcgacacga
    13021 tgttgtctca gttcggctat ggcaaaccga cgggtatcga ccttagtgaa gagtatgacg
    13081 ggctgcttcc cagccgcgca tggaaacagc gggtccataa aaaagcctgg tatcagggcg
    13141 ataccatctc tgtcggcatc ggccagggct actggattgc cacccccatc cagatggtaa
    13201 aagcgatggt ggcgctcatc aacaacagta aggtgattgc ccctcacctg ttactcaatg
    13261 aagagagcgg caaaacggtg gttccgtatc gtccttcagg aacaccggca cagatagccg
    13321 atccggcgtc gccatactgg ggactggtgc gtcaggcgat gtacggcatg gcgaatgcac
    13381 ccaacggaac gggctataag ttctttcaca ccgcgcccta cggcattgcg gccaaaagcg
    13441 gcacgtcgca ggtgtttagc ctgaaagaaa atcagaccta caatgcgaaa atgatcccca
    13501 ttcgcctgcg cgatcatgtg ttttataccg cttttgcacc gtataaaaac cctaaggtcg
    13561 ctattgcctt gattctggaa aacggcggaa gcgacggcgt taccgccgcg cccatcatgc
    13621 gaaaaatcct tgaccacctg tttgatccac aggctgatac cacacagtcg ggtcaggcgc
    13681 catagtcaaa taagcaaagc gccatcagac aaggatacga ccggaatatc tgcatacatc
    13741 agaaatagtt acgcagatat tccgtcaaac acagcattgc catcgcctgc ccgtaaggca
    13801 tagaggtcaa cggaatatga cggtaaaaat cgagatcgtg gcccatgcca gtgccaaatg
    13861 atgtttgcag cagttcgcct tccggcgaga tatgtttcac tatcccccga atagcttttt
    13921 ccgccacctg cgcatagtgc cgttcgacat agcgtttgcg caccgcttta agaataccgt
    13981 aggcaaaacc cgccgtcgcc gacgcctcaa gataagagtg cggatcgtca agcagcgtat
    14041 gccacaaacc gctttcatcc tgacatttcg ccagcgcggc gatctgcgca ttcagtacct
    14101 ggaccagata acggcgcacg gcattatttt ccggcaagtc cagcagttca agaaaatccg
    14161 ggaccacaat ggtcagccag ctgttgccgc gcgcccagcg agcgttagcg aagttatgat
    14221 gaccgtcata gctccagccg tggaaccaca gccccgtctc tttatccatc aaattctgca
    14281 cgtgtagcag gaactgatag gttgcctctt ccacatattc cggccggttc aacagcttac
    14341 cgattttcgc cagcggcagc accgtcatca ttagcgtgtc gtcccacatc tgctgatgat
    14401 tttcctccgc cagcgtgatg tgctgcattc cgccgtaatc ggtacggggc atttcattca
    14461 tcgcccattc ggcccacgtt tccagccacg gtaaatacgc tggattacgc gtctcttcat
    14521 agcgatacgc cagcgttaaa aacggcgcca tcgtattaac gtttttcgtc gtcgcgcctt
    14581 ccgcaaagcg atcggcaaac cagtcatcaa tgatcttacg catcgtctgg tcgccggtct
    14641 gttggtaata gtgatacatt ccgtacaggc ccacgccgtg cgtccactcc catccggccc
    14701 agcctttagt atcgatcacg cgtccgtcgt ccagtcgcaa taaaaattcg cctgtctcat
    14761 ctttaatatt gaccaggtta tgcgtcacct tttgcaccag ggcttttagt tcatctctgg
    14821 cgataaaatg ctcaggctga cgcaatagcg gactgtgttt gactggataa accatcattt
    14881 gcttaacctc tgtgtaatgt cgaattcagt gctgcgtgca gttttaccgc cgacgcagtc
    14941 gattcgctac agtaaaagct aagctgggcg gaaacctttt tgtttctgcc attgtcagag
    15001 cgtaaatggc aaaaacgcaa agagtccggc aacctacctc accattttat aaaacgacgt
    15061 ttctatttat tcaaaaagag agtcaggtct gctacctggc aaagaaaggg gcggttagcg
    15121 gtagttcaca atcacctgat tgctccgcac ttttaacgcc gggataagtc tgccgccgcc
    15181 ggggacttcc cagacaaagc ggagcggctc gactgcggga acatgagcaa aaccgtgggt
    15241 cgtgccactc tgaccatcaa gttctacgca acgggactgg gaacataaac gtacccgtaa
    15301 tcctgcgggg gtcgggccat tcagttcata acgccaggcg accagcgtca tcacaccgga
    15361 aaccggctgg cgcgccgaca atggcgaaga cgatgcggaa acgccccggt aatttaaggt
    15421 tacgcccata ccgctatcct gccacgcgcc ttcgcctgcg gcctgaaccg ttaggggaaa
    15481 gagcaacaat gccagccatt tacgcattat tttcctccaa tggtcgccgt catgcggata
    15541 tgacggttat cggaaagctc aaggttcgac aacaccacca gctgcggtaa actgcgccgc
    15601 aaaaagcggg acaataatgg acgtagcgca tggttaacca gtaataccgg cggcgcgcca
    15661 agcatttcct ggcgagaaag tgcctcttgg gtctgcgcca gcaggcgatc cgccaaccca
    15721 ggctcaagtc caccgccgcc ctgcaatgcc tgaagcagca aacgctccag cgcggtatcc
    15781 aggccaatca cctgcacttc ttcattaccg gggaaccact gttgcgtaat cgctcgccct
    15841 aatgccacgc gtaccacggc ggttaattca tgcggatcgc tttgtaacgg cgcatgttcc
    15901 gccagcgttt ccagaatggt gcgcatatcg cgaataggga ctttttccgc cagtaagttt
    15961 tgcaggactt tgtgtaaagt cgtgagggtc acgacgccgg ggaccagatc ttccgtgagt
    16021 ttaggcatct cctgagagac acgatccaac agttgctgcg cttcctggcg gccaaacagt
    16081 tcggcggaga attggccaat caagtggtta aggtgcgtcg ccacaacggt actggcttcc
    16141 acgacggtaa agccctgaat ttgcgcctgc tctttcaggg cgctttcaat ccagatggca
    16201 tcaaggccaa aagctggatc gacggttttc tcgcccggta gcgttcccgc cgccgtgccg
    16261 gggttaatag ccagccagcg tcccggatag gcgtccccgc tgccgatctc tacccctttc
    16321 atcaaaatac ggtagcgcgc aggctgtaaa tccatattgt cgcgaatgtg gaccaccggc
    16381 ggcaggaacc ccatatcctg cgcgaatttt ttacgaatac tgcgaatacg tccgagcaat
    16441 tcgccatcct gttgaaaatc caccatcggg atcaggcggt agcccacttc cattcccagt
    16501 gaatcctcaa gctgtacgtc attccaggtg gcttcgacca ccgagttatt ttccggcatt
    16561 tttaccggct gcggctcctc cggcgctttt tcttcacgcc cgcgcagcca ccatgccagg
    16621 ccgagcaaag cggcggtaaa gagtaaaaat accaggttag gcattccagg caccatgcca
    16681 agcagcccca gcaccgccgc cgccagcagc attacccttg gattactgaa cagttggcca
    16741 accatctgct cgcctacatc ctgatcggta ctgacgcggg tcacaatgac gcccgccgcc
    16801 gtggagataa ccagcgccgg gatctgggcg accaggccgt cgccaatggt cagcagggtg
    16861 tagctttccg ccgcgctgcc catgctcatt ccgtgctgta atacgccgac cagcagcccg
    16921 cctaccacgt taatgaccat gatgagaata ccggcgatgg cgtcgccgcg tacaaattta
    16981 cttgccccgt ccatcgaacc gtagaagtcg gcttcctgag tgacttccga acgccgtttt
    17041 ttggcctcgt cttcaccaat cagaccggca ttaagatcgg cgtcaatcgc catttgctta
    17101 ccgggcatac catccagcac aaagcgcgcg ccgacttcgg caatacgtcc ggcacctttg
    17161 gtgatgacca tgaagttgat aatgacgagg atgataaaaa ccacaatccc gatcgcgaag
    17221 ttaccgccga ccaggaaatg accgaacgcc tctaccacct ttcccgccgc cgccgcgccg
    17281 gtatgccctt ccatcaaaat aatgcgcgtt gaggcaacgt taagcgccag acgcagtagc
    17341 gtggtaaaca gcaggatggt cggaaacgcg gcaaaatcca gagtacgctg ggtaaacatc
    17401 gccaccagca gcaccatgat cgatagcgca atattaaagg taaacaataa gtcgaggata
    17461 aaagcaggta gcggcagcac catcatcgac aaaatcagca gaatgaggat cggcccggca
    17521 agaatttgcc attgcgtcga tttcaggttg ctgggcaggc gcagcatcgc gaccagatta
    17581 gccatcagta ttcttctcgt tcataaaatc cagcgcttct ggcaccggaa ggttctcagg
    17641 ttgtggagga cgttgcccgc ccgcaagccg ccagcgttta agctgccaga cccaggccaa
    17701 cacttccgca acggcagcat ataactgccc gggaatttgc tgaccgattt cggcgtggcg
    17761 atataatgcc cgcgccagcg gcggcgcttc taaagtggga acccgatgtt cagcgccgat
    17821 ctcgcgaatg cgcagcgcta ttaatccagc ccccttcgcg accactttcg gcgcgctcat
    17881 tttgttttcg tcatactgca gcgccacgga atagtgcgtc gggttagtga caatgacgtc
    17941 cgctttcggc acatcttcca tcatgcggcg ctgcgcggcg gcgcgttgca tctggcgaat
    18001 tttgccctta acatgcggat cgccttcgct ctctttaaat tcgtcgcgaa tgtcctgccg
    18061 cgacatgcgt aattttttca ggtggctaaa gatctggaaa aaaacgtcaa atcccaccat
    18121 cgggatcacg cccagtacca ccagtaacgc gcagagtcca accagatcca gcgcattccc
    18181 cattgcgacg atcggcgact ccgccatcag gcgcatcatt tgcggccagt gattccagag
    18241 ataaaagccg gtaacgcagc cgaccagcgt ggatttcaac accgctttta gcagttccgc
    18301 gccggtctgc gccgaaaaca tgcgcttaat tcccggcagc gggtttaatt tagaaaattt
    18361 tggctgtagc gacttaccgc taaaaatcag gccgccaagc ataaccggcg agataagcgc
    18421 caccagcacc acgcccgcga tgagcggtag cagtgccatc atcgccgctt taatcagcaa
    18481 aattatctgc cccaggatca ggttaggatc gttcaccata cggtgatcga agtgcaggcc
    18541 tgctgagagc attcccgcca gctgccgcgc taacgactcg ccgccgaacc aaataataca
    18601 aacgcccacc agcaatatca gcagtgaggt cagttctctg gaacggggga tctgcccttc
    18661 ttcccgcgct ttttcaagtc ggtggggtgt gggggcttct gttttgtcgt cgtcgctctc
    18721 ttctgccacg cagcaaaccc tggatagatt gataagcgag aatgatgcca gaaccgcttt
    18781 acgccaatgg gcagagtaag cggtaaaaaa ggcggggttt atggcgttaa tagagatagc
    18841 cggatacgat aagaaagtat cgtatccggc cgggttgacg gattcggacc cgataagcgc
    18901 agcgccatca ggtcaaaaaa gcttaaaagc caagactgtc cagcaggtcg tccacctgct
    18961 cctgactggc gacgacgcca gctttcgagg tatccacctg cgggccgttg agcaagcttt
    19021 cgttctcgcg ttttggtcgc gcgctctgtt ccgggatgtt ttccagcagc accattaaca
    19081 actggcgctc aatctcctga atcacgtcca tcatgcgttt gatcacctga cccgtcagat
    19141 cctggaaatc ctgtgccatc atgatgtcca gcagttgcgc gttagtaaag ctggtatggc
    19201 ccgggacatc cctgagaaac tggcgcgtat ccgtcaccag ttcacgggcg tcggaaagct
    19261 cgatcggatt gtcaaaccac tcgtcccaac gttgggttag cgctttcgcc tctttttcca
    19321 tcgcatcctg atgcggctgc gaggcttcga cactgtttag cgcgcgttcc gccgcctgcg
    19381 ccgtcatctg gacgacataa tccagacggt cgcgcgcatc agggatcgcc tccgccgctt
    19441 cggcaatcgc ctggtccagc cccagttcac gcaggctgtc gcgcagcatt cgggtcagac
    19501 taccgatgcg cgcaatgatg tctcctgctg agccttcatc agcaggcttg atagatggtt
    19561 gcatcatcat cgcatcctca catgcccagt ttctcaaaga ttttgttgag cttctcttcc
    19621 agagtcgctg cggtgaacgg ttttacgaca taaccgctgg cgccagcctg tgcggcggcg
    19681 ataatattct ctttcttggc ttccgccgtg accatcaaca cgggtaacgc cgacatggcg
    19741 ctatcggcgc gaatggtttt cagcagctcc aggccatcca tgttcggcat gttccagtca
    19801 gagataataa aaccaaagcc gcctgcctgg agcttgttca gcgcatcgac gccgtcttcg
    19861 gcctcttcca cattgttaaa tccaagctct tttaagaggt tgcgcacgat acgacgcatg
    19921 gtcgaaaagt catccacaac caaaaattta agctctttat ccgccataaa atactactcc
    19981 tggttcaaat acgtatcgcc tgtccggcac tgattttcgc cagcatctgc tggcttacct
    20041 ggctaagatc gaccacttcg cttacgccac ccatattgat ggcctcgcgc ggcatgccga
    20101 acaccacaca acttgcttcg ttttgcgcaa tggtccaggc gccagcctgg tacatcgcta
    20161 acattccagc ggcgccatcg ttgcccatcc ccgtaagaat gacgcctacg gcgttgcgcc
    20221 ccgcgtgttt cgccaccgaa tgaaacagca catccacgga aggccgatgc cggtttaccg
    20281 gcgggccatc atgaattttg atttgataat tcgccccgct acgcgccagc tccatatgct
    20341 tgtcgccggg cgcaatgtag gcatgacctg gcaatacgcg ttcgccgtcc tccgcctcct
    20401 tcacgctgat ttgacagagt ttattcaggc gctcggcaaa cgagcgggta aagccaggcg
    20461 gcatatgctg cgtaataatc actgccggac tggaaagcgg cagcggttgc agcacatgtc
    20521 ggatagcttc agtaccgccc gttgaagcgc cgatagcaat cagtttttcc gaactgagca
    20581 gcggaccggc ttttaaggtt gtcggggccg ccatcggttt atgtgcggcg atgcgggccc
    20641 gcgcggcggt acgcactttt tcggcaatca tctcgctata cgccagcata ccttcacgaa
    20701 tgccaagctg cggtttggtg acaaaatcga tggcccccaa ctccagcgcc cgtagcgtca
    20761 cttcggaacc tttcccggtc agcgaagaga ccatcaccac cggcatcggt cgcaggcgca
    20821 tcagtttttc cagaaaatcg aggccgtcca tacgcggcat ctcaacgtcc aaggtcaata
    20881 cgtccggatt aaattttttg atgagatccc tggcgaccaa cgggtccggc gcagtcgcta
    20941 ccatctccat atcgctatgg ctattaataa tttcagtcat gatttggcgc attagcgcgg
    21001 aatcatcaac tgacaatacc ctgattttac tcatgcttta tccttactta gcgcatacac
    21061 cgtctgtccg cgcaggctaa actcgcgcac gaggttgcta aagttttctg agtgaccggc
    21121 aaacaacagt ccgtcaggtt taaggagtgg aacaaaacgg cgcagaatgt cctcctgagt
    21181 cgttttatca aaatagatca tgacgttacg gcaaaaaatc gcgtcaaagg gaccgggtac
    21241 gttgtactgc ttttccaata aattaacgga ggaaaattca acataattgg ccagttgctg
    21301 acgcacgcgc accagtcctt catgcggccc cgtaccgcgc atgaagtaac gttgtagctg
    21361 ctgcggcgat aacgttttca gttcgctgag gcgataaata ccgcttctcg ctttttccag
    21421 cacttcagta tcaatatcgc tggcgaatac tttccagcga ccgggggcca tccctaacgc
    21481 atccgccagc gtaatggcga tactgtaagg ttcttctcct gtcgatgccg ccgcactcca
    21541 gacgcggtac tcgccgtggc ggcgacgcgc atgttccgca aggatgggaa aatggtgcgc
    21601 ctcgcgaaaa aaagcggtca ggttggtagt cagagcgttg ataaaagcct gccactcaac
    21661 gctgttttga ttagcctcca gcatactgag ataacggcca aaatcatcca gtcccagggc
    21721 acgcagccga cggaccaggc ggttataaac catatcccgc ttatggtcgg ccagcacgat
    21781 ccctgcacgc tggtagatta attgacatat ccgacgaaaa tgcgcgtcgg acagcgcgag
    21841 gcgctgtgtc atctgtaaca atactgacgt ttgcccggag ggcagagatg atgtcatagc
    21901 gccttcttaa tcacattcaa agtacaacgg gcgcgccctg cggcagcgcc atgcttcccg
    21961 tattacacat tttttgcttt tatctatgcg aaccagacga aagggatcgg cgggttcgca
    22021 aattaatcga taaccgacag cacacagcgc acatcgatca gaaggtttcc cagttcgcat
    22081 catccccggc ggctaagggc cgcggcgtat tgccggactg agcgtccact gataaacgca
    22141 tctcaggttt atttaccgcc agcggtcgcg atgccaggcg gaaagccgat accgcctggg
    22201 tcagacggct ggcctgctct tccagcgcgg cggcggccgc tgcggattcc tgaaccagcg
    22261 aggcgttctg ttgcgttacg cgatccattt cggaaacggc caaagcgacc tgatcgatac
    22321 cccggctttg ctcatccgag gcggaggcga tttcgcccat gatatccgtg acgcgcgtaa
    22381 cggcattgac gatgtcagtc atggtttccc cggcgctttc caccagcact gaaccggtat
    22441 cgacacgcga gacggaatct tcaatcaacg cttttatttc tttcgctgcc tgggcactgc
    22501 ggctggccag attacgcacc tcgcctgcca cgaccgcaaa accgcgcccc tgctctcccg
    22561 cgcgcgccgc ttctaccgcc gcgttcagcg ccagaatgtt agtctggaag gcaataccgt
    22621 cgataacgct gataatgtca gcgatttttt tcgaactgtc ggcaatttcg tgcatagtgt
    22681 ttactacgcc gtcgaccact ttgccgccat gacgcgcggt ctcggaggcg ctttgcgcca
    22741 gttgcgaagc ctgacgggca ttatcggcgt tttgcttcac ggtggccgtc agttgttcca
    22801 tgctggccgc cgtctcctcc agagcggagg cttgttgttc ggtacgggaa gagaggtcgg
    22861 tattaccggc ggcaatttca ctggtgccgg aataaatcgc atccgaacct tcacaaacct
    22921 gcgtcacggt gtcaatcagc gagcgttgca tatgttcaac cgttcccgcc agttcgccaa
    22981 tttcattacg tcctgagacg gtgagcgttt tcgtcagatc gccgctggca atttcacgga
    23041 tatgagtaat cactcgcgct aatgggttaa gcaaggcatg acgaatgccg aaccaaacca
    23101 ccatcaaaat cagcaccagc acgaccgcaa gaacccccag ttgccattgc gcaaaacggt
    23161 agtcatgagc actttgatca aatgtctggc ggtacaggtt ttcgctcacc cgggcgtaat
    23221 tgcccagcgc ctcgcccaac gcgttttgca ttccctgggt tggctgggcg aagtaggcat
    23281 ccatattgcc attgtccaga aactgaataa gttcggctaa tgcggcctga tagcgctgat
    23341 atttttcatc gacgttcgcg ctggcctccg ccatcgctgg caatggcgtc atgtttttga
    23401 aattggcgta gtgcgccgcc gcctgtgcga gggtcgtttt tgcattctgg agtaaatccg
    23461 ttttggcgct gctctgctgg ttagaagcgt ccatcatcat gcgtgcggcg gagcggctca
    23521 ggttaatgcg cgtttgcagc attaagtccc atgtcgacgt gagttcgctt tgttgctggc
    23581 gtaattcgtt agaaataaca aaaccttgct ggttatgctg taatgaagaa aacagcaaac
    23641 caccggaaac aagctgtagc agtgcgaaaa cccccagcac catcatcagc attgtgacaa
    23701 cgcggatacg gttaaacata aggcaccttc ctgataacga gttatcaacg ttatcggcac
    23761 ctgcggtgat aactttactt ttgcaaaaag gaaatacgct gttccggaag acgacattgc
    23821 caatgacagt gtcgcagcgg cgatgccggc gcaaaatgca ggggctgggc gcgggcgatg
    23881 aagaggcact ctcaccgctg gcggaagcat aacggtgaat attgccggat ggcgcgacgc
    23941 catccggcaa cgttattacg cgacgtgtga tgctgcgata tccagcagcg ccatctcttc
    24001 gctgttaagc agtttttcga tattcaccag aatcagcata cgctcgccga gcgcgcccaa
    24061 tcccgtcaaa tattctgttg acaaggtcac ggcaaattct ggcgccggac ggatctgttc
    24121 cgccgttaac gacagtacgt cagacacgcc gcctaccact atcccgacga cacgttgccc
    24181 cagattcagt acgatcacta ccgtattgtc atcatactca acgtcgcctt cgcagaattt
    24241 cacgcgcaga tcgacaatgg ggacaatcac gccgcgcagg ttagtcaccc cttttataaa
    24301 ggccggtgta ttggcgatgc gcgtcacctg gtcatagcca cggatctcct gcactttcag
    24361 gatatcgatg ccgtactctt catttcccag tgtaaacacc aggaattcct gacctgacgg
    24421 ctcgccggcc agtttgctta cattactcat accggtcata ttattccctt ctcactcaat
    24481 caggcggctg tgatcgccat acgttgttcg cggtttaaac cctgcaatgc ggaaacatca
    24541 acaatcagcg cgacgctgcc gtcgcccagg atcgtcgcgg cggaaatccc cggtaccttg
    24601 cgataattgc tttccagatt tttgaccacc acctggtgct gaccgatgag ctgatcgacc
    24661 agcagcgcgt aacggcgtcc cgcgctttgc aggatcacaa caatgccctg cgtggattcg
    24721 gttttcgccc cgtccacgtc aaacactttc cacaattcga ccagcggcaa atactcgccg
    24781 cgaacttcca gaacccgttc gccgcccgcc agcggatgaa gatcctcttc acgcggttgc
    24841 agcgactcca tcaccgcatt taacggcagg ataaaaactt cccccgccac gcgaaccgac
    24901 atcccatcga ggatggccag cgtcagcggc agcagaatac gaatcgtggt gccggagcct
    24961 tgttttgact ggatctcaac gtgaccgccc atctcctgaa tgttacgttt caccacatcc
    25021 atgccaacgc cgcgaccgga gacatccgtg acctgttccg cagttgagaa tcccggcgcg
    25081 aagatcaaca tgcctacttc atcgtcggtc atgttttcat tcaccgccat cccctgcgac
    25141 atggccttcg ccaggatacg ctcacggtta agccccgcgc cgtcatcggt cacttcaata
    25201 caaatattcc cgccctgatg ttctgcagaa aggatcagat tgccgacaac atttttcccc
    25261 gcctcaaggc gtttttccgg catttcaatc ccgtggtcga gactgttgcg caccaggtgc
    25321 gtcagcgggt cgataatgcg ttcgatcagg cttttatcaa gttcagtgga gctccccacc
    25381 agcgtcagct ctacctgctt gcccagtttg cccgctaaat cgcgtaccag acgcgggaaa
    25441 cggctgaaga cgtactccat aggcatcata cgaatcgaca tcaccgactc ttgtaagtcg
    25501 cgggcgttac gttgtaactg ccccatactg gtaatgagat cgccgtggtt taccgggtcc
    25561 agctcgttag aacgctgggc caacattgac tgggtaatca ctaactcgcc gaccaggttt
    25621 atgagctgat ccactttctc taccgccacg cgaatgctgg tggactcgcg ttcacgcgca
    25681 ggtttttcac gccccgcatg atgttcatgg gccgcgcttt tggcggctgg cgcaacgact
    25741 gccggagacg ctaccggtgc tacctcggtt ttctcttgcg ctttttcaac cggcgcggtg
    25801 accacttttt caaaagcgat ctgatcggcc tcgatgacaa aacagagcac cgcgacaatg
    25861 tcatcttccg cgacgctgcc atccagagtt gccgacagtg aatccgcccc cttaacgaca
    25921 tccgtcagag tagccagatt gcccaactct tcttcaagca gatcgacctc attggctttc
    25981 aaccgtgaaa gtacaatgcg cagtttactc tcgtcacgag gcgattcggt ttcggctacg
    26041 ctctcttcct ggatcgccgc acttagtgcc gcggtttcta cgaccgccgg cgtggtttcg
    26101 cctttcgcct ccagcgccaa ctggcgtagc gcattgcaga tatattcgaa gcttgcggca
    26161 tccggctctt cggagttttt ataggcgtcg agctgttcct gcataatatc tttcgtttcc
    26221 aaaaacaggt tgataatgtc ggtattgagc tgcatttcac cgcgtcgggc ttcatccagc
    26281 aggttttcca ttaaatgtgt ggtttcctgc agaatagtga agccgaatgt gcccgcgccg
    26341 cctttaatgg agtgcgccgc gcgaaaaatg gcgttcagtt gttcagcgtc cggggattcc
    26401 ggcaccaaat ccagcagatg ctgctccata tcagccaaca gctcgtcagc ttcatcaaaa
    26461 aatgtctgat aaaaatcgct aatatccatg ctcacgctat cacctcggtt ccgcttttgg
    26521 cgatgtgggt acgcttgccg gcggggctgc cgcaggctgt tgtaatacac ttaccggctc
    26581 attctggctt tcagcgtttt catgcaaaat ggcctgttcc gcctgtttgt ttaacaccag
    26641 caggcttata cggcggttga tggcgtcatc aggaccgcga tcgctcagcc gcatcgtggc
    26701 ggccatgcca accacccgta atacttttcc gttatccagc ccgccagcga ccagttcgcg
    26761 acgagaggca ttggcgcgat cggcggataa ctcccagttg ctatagcctt tttcgccgtt
    26821 cgcgtaggga aagtcatcgg tatggccggc caggctaatg cgattaggta taccgtttaa
    26881 cactggcgca atcgcacgca ggatatcgcg catatacggc tcaacttcgg cgctgccggt
    26941 tttaaacatc gggcggttct ggctgtcgat aatctggatg cgcaacccct cctgaactaa
    27001 atcaattttc agatgcggac gtaacgcgcg cagtttggga tcggattcga tcagttgatc
    27061 cagatcgccg cgcagtttgt ttaaccgact ctgctccatc cgttttttca gctcgtcgat
    27121 attcggctgc ttttccactt caccctgctg ttgggtgtaa tcatcgccgc cgcctggtat
    27181 cgggctcttg ctattggcaa tccgatttcc ccccgttacc gcggtggcca acggcgtacg
    27241 aaaatattcg gcaatctgaa ttaattcttt agggctggag atggaaatca gccacatcac
    27301 cagaaaaaaa gccatcatcg ccgtcataaa atcggcgtag gcaattttcc aggaaccgtg
    27361 cgccccgccg ccgtgcggtt tgtgcctgcg gcgttttacg acgacaatgg gatgagcctg
    27421 atttttcatg cttcctcagt cgtctgctgc tggtttgggt ttctcactgc gcgaacgtgt
    27481 tcttccaact caataaacga tggacgctca ctggaataaa gcgttttacg accaaattcc
    27541 acggcaatcg gcggcgcata gccgttcaga ttagacagca gtgtaatttt tacgcactgc
    27601 atcatcttag tggtttcggc gctcttctgg cgcaaaacgg tcgctaacgg tgaaatgaat
    27661 ccataagcca gtaaaatacc gaggaacgta cctaccatgg catgggcaat cagcgccccc
    27721 aactccgctg ccggacgatc ggctgaagcc agagcgtgaa ccacccccat taccgccgcg
    27781 acgataccaa aggcaggcag cgaatccccc accatcgcca gactgttggc cgggacttcc
    27841 gcctcgcttt catgggtttc aatctcttca tccatcaacg cttcaatttc gaacgtattc
    27901 atgttgccgc tgatgatcag acgcagataa tcgacaataa aatcaagcat taccgcatcg
    27961 gccagaatac gcggataact ggcgaagatt tcactctctt tcggattttc aatatcgcgt
    28021 tcaagggaga acatcccctg ctggcgtgat ttggccatca ggcgatagag caacgccagc
    28081 aaatccatgt acatagattt cgtgtatttc gaacggcgaa ataacaacgg gatcgctttc
    28141 atcgtgcctt tgatggcctt cccgttgttg ccgacaatga acgcccccat ccccgcgccg
    28201 ccaatgatga ccagttcagc aggttgatag agtgccccaa ggtgtccgcc ggtcatgaca
    28261 taaccgccga aaactgtacc gataaccacc aagtaaccta ataagataag cacgacatca
    28321 tccttccgct gttgactatg acaggatgcg cagtcgggcg attaacgcga aggcaaggca
    28381 aaaaaaaaaa gcagcggtaa tggcttaccg ctgctggagt gtttgtccac accgtttcgg
    28441 ttaaacagcc tgttcgatct gttcatccag cagttgtgga ataatatcgg cagcatctcg
    28501 ggaaagttta cgtcttttta ctgcgcggga tggcggctgg cataaactac acgcaaagct
    28561 gcctacgggc tgatgcgcat gggtaataaa gttcccaccg cagcagttac agctcgacaa
    28621 ttcaagcaac ccactttcaa caaaacgcac cagcgtccat gcgcgagtca gcgccaacaa
    28681 cgacccttca ggcggttgcg gacactgctc aagataaagc cgataagctt taatcaccgc
    28741 atccacaccg ctgcataagc cggtcttcag taaaaattgc caggcgttgc agaacatgga
    28801 ggcatgaata ttttgctccc aggtcataaa ccagtctgtc gaaaatggca gcatcccttt
    28861 aggcggcggg ctaccgcgta attctttgta cagcctgatg aggcgaccac ggctgagctg
    28921 tgtttcgctt tccagcattt gtagacgagc gccaagatta atcaactcca tcgccaactg
    28981 gatatcgcga gcttcctgaa caatgctttt ttcgctcatt atcatgccct tttcttacgc
    29041 gccgtatcgt ccacttcatt gagcagacgc gttgaaagca tgatacctgt gtgaatctgc
    29101 tgtaagtcat cgacgcgcga atcctgagtc aaacgggtga tcgtctgatg atcgtcaaac
    29161 cggaaatgac aaactaactg gttcgtctcc gccagtttga ccatctgcgg cagggtcaac
    29221 gcgcccagtg tgtttgccat ctcttcgttg ataccgaggc ggaacatcgc agatgcttta
    29281 tcctggacga tcaaacgctg tgcaaggagt aaatatgaca aattgatgtc ataaatgtgt
    29341 tttagcaact cggatgtatg cattgttccc atccagaata accaacttta tttttgtgcg
    29401 acgtagccgc accccgtgat gtcgccggga aggtccggta aaagaagcaa aaaggtcaaa
    29461 tgcatagcag cgctcagaca ttatggacat tgtgacgtat aacgcagctt cccactggga
    29521 ttcgccttac acgtttacat caatttttac aaatgcctaa gatttttcct aattcgacgc
    29581 aactctactc gtcagtttcg tgacatacaa cggagcggga cggcgatttt agaaaatatg
    29641 cgatgcagat cacataattt aacagaatac ttacgataaa accatcagta tggcttttac
    29701 tttgtttaat taataaccta atattcactt tttctattcc acactgctga a
//
LOCUS       DAJVSD010000024        29423 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.024, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000024 DAJVSD010000000
VERSION     DAJVSD010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 29423)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29423)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29423
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.024"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            21..179
                     /locus_tag="OQP62_000932"
     CDS             21..179
                     /locus_tag="OQP62_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720550.1"
                     /translation="MFMFLPFLLALSVAMGAINRKDKVSYILWAVLLIVTILSFIHHM
                     TNSLTLSF"
     gene            189..803
                     /locus_tag="OQP62_000933"
     CDS             189..803
                     /locus_tag="OQP62_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HCS1720551.1"
                     /translation="MKTHHHPTTFVHLINQIGLLGICVALVVAFYYQLVRHELPCPIC
                     LLQRAGLIIAGFGFLFNLCFGLRGIHYGMVIIGSILTGVMASRQICLHIMPGDTGYGS
                     AFFGLHFYTWTLITSILIIIAVAVVLAISSMNAAFRSLNINPNLFSIVGWVFLLLITA
                     NLISTVLECGGGECAANPVTYKLLSKQDIAFLKTGLLTRTVLRL"
     gene            complement(1212..3191)
                     /locus_tag="OQP62_000934"
     CDS             complement(1212..3191)
                     /locus_tag="OQP62_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020078314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HCS1720552.1"
                     /translation="MRLKSIVKSFALAGLLSSTALTPLFAQEAPKGATASTKQANNAL
                     YNQLPFSDNTDFTNAHKGFIADLPAEVIKGEQGNVIWNPQQYAFIKEGEKSPDTVNPS
                     LWRQSQLINISGLFEVTDGVYQIRNLDLSNMTIIEGKEGITVVDPLVSAETAKAGMDL
                     YFKNRGNKPVVAIIYTHSHVDHYGGVRGVVDEADVKSGKVKVYAPAGFMEAAVAENIM
                     AGNVMSRRASYMYGNLLKPDASGQVGAGLGTTTSAGTVTLIAPTNIIDKDGQKEVIDG
                     LTYDFMLAPGSEAPSEMLWFIEEKKLIEAAEDVTHTLHNTYSLRGAKIREPLPWSKYI
                     NEAIVRWGDKAEIIMAQHHWPTWGNENVVGLLKSQRDLYRYINDQTLRMANEGLTRDE
                     IAANFKLPDSLAKTWANRGYYGSISHDVKATYVLYLGWFDGNPATLDELPPEEAAKKF
                     VEYMGGADAILQKAKADFDQGNYRWVAQVVSKVVFADPNNQNARNLEADALEQLGYQA
                     ESGPWRNFYLTGAQELRNGVVKGPTPNTASPDTVRAMTPEMFFDFLAVHINGEKAGNA
                     RAVFNIDLGSDGGKYKLELENGVLNHTANAEAKDADATITLNRDTLNKIILKEETLKQ
                     AQDKGEVNVTGNAAKLDEMLGYMDKFEFWFNIVTP"
     gene            3587..4717
                     /locus_tag="OQP62_000935"
     CDS             3587..4717
                     /locus_tag="OQP62_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000529511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HCS1720553.1"
                     /translation="MGQDSDDRRRTSSAGRVWQDHKDMVRQALRVSIPWFTFVNISFA
                     LIILFRHILISDFDKSISAQTGILPLIDDIMGSIIVFSFLILLFIYRLPARFTPLCLV
                     MLLILSLMWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTA
                     LLASVQLNQYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMA
                     HQDALTGTANRRSMESFLGDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVA
                     CVVKRSIRTPADLVARYGGEEFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASAVS
                     ETVTVSMGITLSTAGDTVTGIIARADEALYRAKQQGRNRWVK"
     gene            complement(5003..5398)
                     /locus_tag="OQP62_000936"
                     /pseudo
     CDS             complement(5003..5398)
                     /locus_tag="OQP62_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000089414.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF977 family protein"
     gene            complement(5411..5521)
                     /locus_tag="OQP62_000937"
                     /pseudo
     CDS             complement(5411..5521)
                     /locus_tag="OQP62_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000140163.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
     gene            5522..5883
                     /locus_tag="OQP62_000938"
                     /pseudo
     CDS             5522..5883
                     /locus_tag="OQP62_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415865.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecT"
     gene            5885..6190
                     /locus_tag="OQP62_000939"
                     /pseudo
     CDS             5885..6190
                     /locus_tag="OQP62_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001189081.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
     gene            complement(6554..6907)
                     /locus_tag="OQP62_000940"
     CDS             complement(6554..6907)
                     /locus_tag="OQP62_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebY family protein"
                     /protein_id="HCS1720554.1"
                     /translation="MKKILLPALLLATSGVALAAPQVITVSRFEVGKDKWAFNREEVM
                     LTCRPGQALYVINPSTLVQYPLNAIAEQQVAEGKTRAQPIAIIQIDNPAKPGEKMSLA
                     PFIERAQKLCDPSNS"
     gene            complement(6924..7799)
                     /gene="copD"
                     /locus_tag="OQP62_000941"
     CDS             complement(6924..7799)
                     /gene="copD"
                     /locus_tag="OQP62_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis membrane protein CopD"
                     /protein_id="HCS1720555.1"
                     /translation="MMLTFVWITLRFIHFASLMLVYGCALYGAWLAPASIRRLMTRRF
                     LHLQRHAAAWSVISAAFMLAIQGGLMGGGWPDVFSVSVWGAVLQTRFGAVWIWQIILA
                     LVTLAVVVIAPVKMQRRLLILTVAQFILLAGVGHATMRDGVAGTLQQINHALHLLCAA
                     AWFGGLLPVVYCMRMAQGRWRQHAISAMMSFSRYGHFFVAGVLLTGIGNTLFITGFTA
                     IWQTTYGQLLLLKCALVVLMVAIALTNRYVLVPRMRQENPRTDLWFVRMTQIEWGVGG
                     IVLAIVSLFATLEPF"
     gene            complement(7800..8174)
                     /gene="yobA"
                     /locus_tag="OQP62_000942"
     CDS             complement(7800..8174)
                     /gene="yobA"
                     /locus_tag="OQP62_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopC domain-containing protein YobA"
                     /protein_id="HCS1720556.1"
                     /translation="MASSAPSRRLALLLLASTFATPAAWAHAHLTHQYPAANAAVTAS
                     PQALTLNFFEGIEPGFSGATITGPQQESIKTRPAKRNEQDKTQLIIPLEQPLKSGAYT
                     VDWHVVSVDGHKTKGKYTFSVK"
     gene            8312..8542
                     /locus_tag="OQP62_000943"
     CDS             8312..8542
                     /locus_tag="OQP62_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit theta"
                     /protein_id="HCS1720557.1"
                     /translation="MKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQ
                     PEHLRAWFRERLIAHRLASVSLSRLPYEPKVK"
     gene            8650..9306
                     /locus_tag="OQP62_000944"
     CDS             8650..9306
                     /locus_tag="OQP62_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HCS1720558.1"
                     /translation="MSSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPS
                     LSLLGCDERNKPLPAPPDEALLQPLTHAADTHHMTIIVGMPVEHNCRFVKGIAIFAPW
                     LTSPLMFHKSHGACIARQRSAINVVDEQPEGGDIGPSFTLFTTSQCLNEPELHASTSR
                     LQRFSHKYALAVLMANACGSSALWDESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR
                     "
     gene            9330..10028
                     /gene="exoX"
                     /locus_tag="OQP62_000945"
     CDS             9330..10028
                     /gene="exoX"
                     /locus_tag="OQP62_000945"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease X"
                     /protein_id="HCS1720559.1"
                     /translation="MLRIIDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDRPIT
                     PQAMAIHRITEAMVADKPWIEDVIPLYYGSEWYVAHNASFDRRVLPELPGEWICTMKL
                     SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRTTGWTAEE
                     MVNITGRPALLTTFPFGKYRGKAVSEVAKRDPGYLRWLFNNLDNMSPELRLTLKHYLE
                     DVQAGEQRSNGTPQ"
     gene            complement(10065..12116)
                     /gene="ptrB"
                     /locus_tag="OQP62_000946"
     CDS             complement(10065..12116)
                     /gene="ptrB"
                     /locus_tag="OQP62_000946"
                     /EC_number="3.4.21.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase B"
                     /protein_id="HCS1720560.1"
                     /translation="MLPKANRIPYAMTVHGDTRIDNYYWLRDDTRSQPEVLDYLHQEN
                     EYGRKVMSSQQALQDRILKEIIDRIPPREVSAPYVKNGYRYRYIYEPGCEYAIYQRQS
                     ALSEEWNVWETLLDANQRAAHSEFYTLGGLAITPDNTIMALAEDYLSRRQYGLRFRNL
                     ESGNWYPELLDNVAPEFVWANDSLTLYYVRKHKKTLLPYQVWRHTIGTPSSQDELVYE
                     EKDDTFYVSLHKTTSQHYVVIHLASATTSEVLLLDAELADAEPFSFLPRRKDHEYSLD
                     HYQHKFYLRSNRNGKNFGLYRTRVRNENAWEELIPPREHIMLEGFTLFTDWLVVEERQ
                     RGLTSLRQINRKTREVIGIAFDDPAYVTWLAYNPEPETSRLRYGYSSMTTPDTLFELD
                     MDTGERRVLKQTEVPGFDSGCYQSEHLWITARDGVEVPVSLVYHQKYFRKGQNPLLVY
                     GYGSYGSSIDADFSSSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKRNTFNDY
                     LDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINERPELFHGVIAQVPFVDVLTTML
                     DESIPLTTGEFEEWGNPQDIEYYDYMKSYSPYDNVKAQDYPHLLVTTGLHDSQVQYWE
                     PAKWVAKLRELKTDQRLLLLCTDMDSGHGGKSGRFKSYEGVALEFAFLIGLAQGTLHS
                     A"
     gene            complement(12330..12989)
                     /locus_tag="OQP62_000947"
     CDS             complement(12330..12989)
                     /locus_tag="OQP62_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HCS1720561.1"
                     /translation="MANWLNQLQSLLGQKGASASPSGEQGLNKLLVPGALGGLAGLLV
                     ANKSSRKLLTKYGTGALLVGGGAVASSVLWNKYKDKVRAAHQGEPQFGSQSTPLDIRT
                     ERLILALVFAAKSDGHIDAKERAAIEHQLRESGVEEQGRVFIEKAIEQPLDPQRLAQG
                     VRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQEVRDGIEQDLQQQKQALP
                     G"
     gene            complement(13083..13436)
                     /locus_tag="OQP62_000948"
     CDS             complement(13083..13436)
                     /locus_tag="OQP62_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720562.1"
                     /translation="MNKRGALLSLLLLSASVSAFAASTESKSVKFPQCEGLDAAGIAA
                     SVKRDYQQNRIVRWADDQKKVGQADPVAWVNVQDVVGQNDKWTVPLTVRGKSADIHYQ
                     VIVDCKAGKAEYKPR"
     gene            complement(13504..13794)
                     /gene="yebG"
                     /locus_tag="OQP62_000949"
     CDS             complement(13504..13794)
                     /gene="yebG"
                     /locus_tag="OQP62_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein YebG"
                     /protein_id="HCS1720563.1"
                     /translation="MAVEVKYVVIREGEEKMSFTSKKEADAWDKMLDTADLLDTWLEQ
                     SPVVLEDGQREALSLWMAEHKEVLSTILKTGKLPSPQAVEKDAASKTKKQAA"
     gene            13925..15103
                     /gene="purT"
                     /locus_tag="OQP62_000950"
     CDS             13925..15103
                     /gene="purT"
                     /locus_tag="OQP62_000950"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HCS1720564.1"
                     /translation="MTLLGTALRPAATRVMLLGAGELGKEVAIECQRLGIEVIAVDRY
                     PDAPAMHVAHRSHVINMLDGEALRHVITEEKPHYIVPEIEAIATDTLRELEGEGLNVV
                     PCARATQLTMNREGIRRLAAEELGLPTSTYRFADSEASFHDAVAAVGFPCIVKPVMSS
                     SGKGQSFIRSAEQLAQAWEYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFC
                     APVGHRQQDGDYRESWQPQQMSELALKRAQEIARHVVLALGGHGLFGVELFVCGDEVI
                     FSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGMPIGAIRQYGPAASAVILPQLTSQN
                     VTFDDVHAAVGAGVQVRLFGKPEIDGTRRLGVALATGENVEEAVIRAKKAASRVTVKG
                     "
     gene            complement(15203..15844)
                     /gene="kdgA"
                     /locus_tag="OQP62_000951"
                     /gene_synonym="eda"
     CDS             complement(15203..15844)
                     /gene="kdgA"
                     /locus_tag="OQP62_000951"
                     /gene_synonym="eda"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HCS1720565.1"
                     /translation="MKNWKTSAEAILTTGPVVPVIVVNKLEHAVPMAKALVAGGVRVL
                     EVTLRTACAMDAIRAIAKDVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLK
                     AATAGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGTKALQAIAGPFSQVRFCP
                     TGGISLANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVEGAKQ"
     gene            complement(15882..17693)
                     /gene="edd"
                     /locus_tag="OQP62_000952"
     CDS             complement(15882..17693)
                     /gene="edd"
                     /locus_tag="OQP62_000952"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HCS1720566.1"
                     /translation="MNPNLLRVTQRIVERSQQTRKAYLARIEQAKTATVHRSQLACGN
                     LAHGFAACQPEDKASLKSMLRNNIAIITSYNDMLSAHQPYEHYPQIIRQALHSVNAVG
                     QVAGGVPAMCDGVTQGQDGMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPG
                     LAMAALSFGHLPAIFVPSGPMASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAP
                     GTCTFYGTANTNQMVVEFMGMQLPGSSFVHPDAPLREALTAAAARQVTRLTGNGNTWM
                     PLGKMIDEKVVVNGIVALLATGGSTNHTMHLVAMARAAGILINWDDFSDLSEVVPLMA
                     RLYPNGPADINHFQAAGGVPVLMRELLNAGLLHEDVNTVAGFGLKRYTLEPWLNNGEL
                     DWREGAERSLDNDVIASFDKPFSPHGGTKVLSGNLGRAVMKTSAVPVENQIIEAPAMV
                     FESQHDVLPAFDAGLLDRDCVVVVRHQGPKANGMPELHKLMPPLGVLLDRRFKIALVT
                     DGRLSGASGKVPSAIHVTPEAYDGGLLAKVRDGDIIRVNGQTGELTLLVDEAELAARQ
                     PHIPDLSASRVGTGRELFGALREKLSGAEQGATCITF"
     gene            complement(17928..19403)
                     /gene="zwf"
                     /locus_tag="OQP62_000953"
     CDS             complement(17928..19403)
                     /gene="zwf"
                     /locus_tag="OQP62_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HCS1720567.1"
                     /translation="MAVTQTAQACDLVIFGAKGDLARRKLLPSLYQLEKAGQIHPDTR
                     IIGVGRADWDKEAYTHVVREALETFMKEKIDEGLWDTLSGRLDFCNLDVNDTPAFSRL
                     GDMLDQKNRTTINYFAMPPSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSREIN
                     DRVGEYFEECQVYRIDHYLGKETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVG
                     IEGRWGYFDQAGQMRDMIQNHLLQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDR
                     SNVREKTVRGQYTAGFAQGQKVPGYLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFY
                     LRTGKRLPTKCSEVVVYFKTPELNLFKESWQDLPQNKLTIRLQPDEGVDIQVLNKVPR
                     LDHKHNLQITKLDLSYSETFNQTHLADAYERLLLETMRGIQALFVRRDEVEEAWKWVD
                     SITEAWAMDNDAPKPYQAGTWGPVASVAMITRDGRSWNEFE"
     gene            19745..20614
                     /locus_tag="OQP62_000954"
     CDS             19745..20614
                     /locus_tag="OQP62_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HCS1720568.1"
                     /translation="MNMLEKVQSQLEHLSKSERKVADVILAAPGRSIHLSIAMLAQEA
                     NVSEPTVNRFCRSMNTRGFPDFKLHLAQSLANGTPYVNRNVDEDDSVEAYTGKIFESA
                     MASLDHVRQSLDKSAVNRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVIYS
                     DDIVLQRMSCMNCNDDDVVVLISHTGRTKSLVELAQLARENDAMVIALTSAGTPLARE
                     ATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES
                     RFDKELLIRSDDR"
     gene            20738..22180
                     /gene="pyk"
                     /locus_tag="OQP62_000955"
     CDS             20738..22180
                     /gene="pyk"
                     /locus_tag="OQP62_000955"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HCS1720569.1"
                     /translation="MSRRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSP
                     EDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGK
                     GEGDKEKVGIDYKGLPADVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNK
                     GINKLGGGLSAEALTEKDKADIQTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDA
                     KIVAKVERAEAVCDQNAMDDIILASDVVMVARGNLGVEIGDPELVGIQKALIRRARQL
                     NRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAM
                     ARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTA
                     LMTSRISSGLPIFAMSRHERTLNLTALYRGVTPVHFDSAADGVVAAHEAVNLLRDKGY
                     LVSGDLVIVTQGDVMSTVGSTNTTRILTVE"
     gene            complement(22253..23224)
                     /gene="lpxM"
                     /locus_tag="OQP62_000956"
                     /gene_synonym="msbB"
     CDS             complement(22253..23224)
                     /gene="lpxM"
                     /locus_tag="OQP62_000956"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460846.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HCS1720570.1"
                     /translation="METKKNNSEYIPEFEKSFRYPQYWGAWLGAAAMAGIALTPASFR
                     DPLLATLGRFAGRLGKSSRRRALINLSLCFPQRSEAEREAIVDEMFATAPQAMAMMAE
                     LAMRGPKKIQQRVDWEGLEIIEEMRRNDEKVIFLVPHGWGVDIPAMLMASQGQKMAAM
                     FHNQGNPVFDYIWNTVRRRFGGRLHARNDGIKPFIQSVRQGYWGYYLPDQDHGPEHSE
                     FVDFFATYKATLPAIGRLMKVCRARVIPLFPVYNGKTHRLTIQIRPPMDDLLTADDHT
                     IARRMNEEVEIFVGPHPEQYTWILKLLKTRKPGEIQPYKRKDLYPIK"
     gene            complement(23341..24660)
                     /gene="mepM"
                     /locus_tag="OQP62_000957"
     CDS             complement(23341..24660)
                     /gene="mepM"
                     /locus_tag="OQP62_000957"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein DD-endopeptidase MepM"
                     /protein_id="HCS1720571.1"
                     /translation="MQQIAGSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHPE
                     SAPIVKTIELEKSEIRSLLPEASEPIDQAAQEDEAIPQDELDDKTAGEVGVHEYVVST
                     GDTLSSILNQYGIDMSDISRLAASDKELRNLKIGQQLSWTLTADGDLQRLTWEVSRRE
                     TRTYDRTANGFKMSSEMQQGDWVNSLLKGTVGGSFVASAKEAGLTSSEISAVIKAMQW
                     QMDFRKLKKGDEFSVLMSREMLDGKREQSQLLGVRMRSDGKDYYAIRAADGKFYDRNG
                     VGLAKGFLRFPTAKQFRISSNFNPRRLNPVTGRVAPHRGVDFAMPQGTPVLSVGDGEV
                     VVAKRSGAAGYYIAIRHGRTYTTRYMHLRKLLVKPGQKVKRGDRIALSGNTGRSTGPH
                     LHYEVWINQQAVNPLTAKLPRTEGLTGSDRREYLAQVKEILPQLRFD"
     gene            complement(24676..25620)
                     /gene="znuA"
                     /locus_tag="OQP62_000958"
     CDS             complement(24676..25620)
                     /gene="znuA"
                     /locus_tag="OQP62_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     ZnuA"
                     /protein_id="HCS1720572.1"
                     /translation="MLQKNTLLFAALSAALWGSATQAADAAVVASLKPLGFIASAIAD
                     GVTDTQVLLPDGASEHDYSLRPSDVKRLQGADLVVWVGPEMEAFMEKSVRNIPDNKQV
                     TIAQLADVKPLLMKGADDDEDEHAHTGADEEKGDVHHHHGEYNMHLWLSPEIARATAV
                     AIHEKLVELMPQSRAKLDANLKDFEAQLAATDKQVGNELAPLKGKGYFVFHDAYGYYE
                     KHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVEAVARGTS
                     VRMGTLDPLGTNIKLGKTSYSAFLSQLANQYASCLKGD"
     gene            25699..26454
                     /gene="znuC"
                     /locus_tag="OQP62_000959"
     CDS             25699..26454
                     /gene="znuC"
                     /locus_tag="OQP62_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter ATP-binding protein ZnuC"
                     /protein_id="HCS1720573.1"
                     /translation="MTSLVSLENVSVSFGQRRVLSDVSLELSPGKILTLLGPNGAGKS
                     TLVRVVLGLVAPDEGVIKRNGQLRIGYVPQKLYLDTTLPLTVNRFLRLRPCTQKTDIL
                     PALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY
                     DLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCSGAPEVVSMHPEFISMFG
                     PRGAEQLGIYRHHHNHRHDLQGRIVLRRGNGHS"
     gene            26451..27236
                     /gene="znuB"
                     /locus_tag="OQP62_000960"
     CDS             26451..27236
                     /gene="znuB"
                     /locus_tag="OQP62_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease subunit ZnuB"
                     /protein_id="HCS1720574.1"
                     /translation="MIELLLPGWLAGMMLACAAGPLGSFVVWRRMSYFGDTLAHASLL
                     GVAFGLLLDVNPFYAVIAVTLLLASGLVWLEKRPHLAIDTLLGIMAHSALSLGLVVVS
                     LMSNVRVDLMAYLFGDLLAVTPEDLISIAIGVVIVLAILFWQWRNLLSMTISPDLAFV
                     DGVKLQRVKLLLMLVTALTIGVTMKFVGALIITSLLIIPAATARRFARTPEQMAGVAV
                     GVGMIAVTGGLTFSAFYDTPAGPSVVLCAALLFIFSMMKKQAS"
     gene            complement(27315..28325)
                     /gene="ruvB"
                     /locus_tag="OQP62_000961"
     CDS             complement(27315..28325)
                     /gene="ruvB"
                     /locus_tag="OQP62_000961"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HCS1720575.1"
                     /translation="MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIF
                     IQAAKRRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLT
                     NLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
                     TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARG
                     TPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKF
                     FGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE
                     MP"
     gene            complement(28334..28945)
                     /gene="ruvA"
                     /locus_tag="OQP62_000962"
     CDS             complement(28334..28945)
                     /gene="ruvA"
                     /locus_tag="OQP62_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012131997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HCS1720576.1"
                     /translation="MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQE
                     AIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAV
                     EREELGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDAE
                     QEAVAALVALGYKPQEASRMVSKIARPDASSETLIRDALRAAL"
BASE COUNT         6985 a         7852 c         7274 g         7312 t
ORIGIN      
        1 atgtaataaa ggagtttttt atgttcatgt ttctgccatt cttgcttgca ctgagcgtgg
       61 caatgggagc cataaacaga aaggataaag tcagctacat tctatgggcc gttttactca
      121 tcgtcactat tttatcattc atccatcata tgaccaattc gctaactttg tcattttaag
      181 gagtgtgtat gaaaacgcat catcatccaa caacatttgt tcatctgatt aatcagatag
      241 gactccttgg gatatgcgtt gctctggttg tagcctttta ttatcaactc gttaggcatg
      301 agctgccttg tccaatttgc ttattacagc gggctggcct catcatcgcc ggttttggct
      361 ttttatttaa cctctgcttt ggtctacgag gcatacatta cgggatggta attattggca
      421 gtatcctgac cggagttatg gcatcccggc aaatatgttt gcatatcatg cccggtgaca
      481 caggatatgg ttctgcattt tttggattac acttttatac ctggactctg attacgtcaa
      541 ttctcattat tattgctgtt gcggtagttc tggcaatcag tagcatgaat gctgcatttc
      601 gttcattgaa tattaatccg aacctgttca gtattgtcgg ttgggtattt ctattactga
      661 ttactgccaa ccttatttca actgtactgg aatgtggcgg aggggaatgt gctgctaacc
      721 cggtcacata taagctactg tcgaagcagg atattgcctt tctgaaaaca ggcctcctga
      781 cgaggacagt tctccggtta tgacgcactt ttaaaatgac tgattggtaa atatatagca
      841 agcacctgtc ttgtagaaac tggaatggtt atgggctaac acggaagttt cagtaacgtt
      901 gaaatggtgc aataatagga atcaaactta taaccttcgc attacgaatt agtagaatca
      961 catttaacta actaaaagca tgttgaccag actcgcagac cattgaatca cgcaacaacc
     1021 agttactgtc atctgatgaa aaaggctgtg cataacagaa tcaggactga ctggcatcag
     1081 ggtcatgtgc ttcagcagca aatacataaa atgaagcaag atataaagaa tgaaggaaaa
     1141 atcgagtatg aaaaacgtac agaattgtct gaagtaactt ccctgcagca ttgacgccgc
     1201 agggaatcta tttatggtgt aactatattg aaccagaact caaacttgtc catatagccc
     1261 agcatctcat ccagtttcgc agcattaccg gtaacgttga cttctccttt atcttgagcc
     1321 tgcttcagag tttcttcctt caggataatt ttattcagcg tgtcacggtt cagagtaatc
     1381 gtggcatcag cgtctttcgc ttcagcatta gccgtgtggt tcagcacgcc attttccagc
     1441 tcaagcttgt actttccgcc gtcgctgcca aggtcaatat taaacaccgc ccgggcatta
     1501 cccgcttttt caccgttgat atgtacagcc aggaaatcga agaacatttc aggggtcatt
     1561 gcccgaacgg tatccggact tgctgtattt ggcgtcggac ctttaaccac accgttacgc
     1621 agctcctgcg caccggtcag gtagaagtta cgccatggac cagattcagc ctgatacccc
     1681 aattgttcca acgcatcggc ttcaaggtta cgtgcattct ggttatttgg atcggcaaac
     1741 acgaccttac tcaccacctg agcaacccaa cggtagttcc cctggtcaaa gtctgctttg
     1801 gctttctgaa gaatcgcatc ggcaccgccc atatattcaa caaatttctt agccgcttct
     1861 tcgggtggca gctcatcaag ggttgccgga ttgccatcga accaaccgag atacagcaca
     1921 tacgttgctt ttacgtcatg gctgatggag ccgtaatagc cgcggttggc ccaggttttt
     1981 gccaggctat ccggtagttt gaagttggcc gctatttcgt cgcgagtcag accttcattg
     2041 gccatacgca gagtctggtc attgatataa cgatacaggt ctcgctggct tttcagcaga
     2101 ccaacaacat tctcgttacc ccaagtcggc cagtggtgct gggccataat aatttcagct
     2161 ttgtcacccc aacgcactat agcttcgttg atatatttcg accacggcaa cggctcacga
     2221 atttttgcgc cgcgtagcga gtaagtgtta tgcagggtgt gagtgacgtc ctctgcggct
     2281 tcgatgagtt tcttctcttc gatgaaccac agcatttccg aaggggcttc cgaaccaggg
     2341 gccagcataa agtcgtaagt caggccatca atcacttctt tctggccgtc tttatcaatg
     2401 atattagtgg gcgcaatcag tgtcaccgtc cccgcagagg tggtcgtccc cagtccggcg
     2461 ccaacctggc cggaggcatc tggtttcagg aggttgccat acatatagct ggcacggcgg
     2521 ctcatcacgt tgccggccat aatattctcg gctactgctg cctccataaa gccagcaggc
     2581 gcatacactt tcaccttgcc ggatttcacg tccgcttcat cgacaacgcc acgcacacca
     2641 ccatagtggt caacatggct atgagtataa atgatggcga caacaggctt attgccacgg
     2701 tttttgaaat acaaatccat accggctttg gctgtttccg cagaaaccag cggatcgaca
     2761 accgtaatcc cctctttacc ttcgataatc gtcatgttgg ataaatcaag gttacgaatc
     2821 tggtagacgc cgtctgttac ttcaaacaag ccactgatat tgattagttg ggactgacgc
     2881 cacagactag ggttaacagt gtcaggagat ttttcccctt cttttatgaa agcgtactgc
     2941 tgtggattcc agatgacatt cccttgctct cccttaatca cctctgcagg taaatcagca
     3001 ataaagcctt tatgggcatt cgtgaaatcg gtgttatcag agaaaggaag ttggttataa
     3061 agcgcattgt tagcttgctt ggttgaagca gtggcacctt ttggggcttc ctgggcaaat
     3121 aaaggtgtca gcgcagtgga agagagtagc cccgccagcg caaaactttt aacgatcgac
     3181 ttaagtctca tttgtacccc tcatgtaaaa atattctgta tcactcagtc tggtcgatta
     3241 attatctgtt aattcaaaca attaaagtta ttgctgacca ttttcgctct tttaaatata
     3301 accaaaacgt tacatttcgc tatttatgga tacaaataag tcgtgtttta cgtctgccag
     3361 ttacatcctc ttttagtaag tggggtaaac tcgcttccag tttccgggaa acactataat
     3421 tctcccccct actacaggaa ttgtgactat aagttcgtca ctgtggagca aaaatcatct
     3481 catcagccaa aaatgcagcc tggcctgata gcttttccat ttttcaccat gaagtatctc
     3541 cgcactacac tggatagtaa ttattcatta tatgaggcga ttaaggatgg ggcaggattc
     3601 ggacgacagg cgccgtacct ccagtgctgg aagggtatgg caggatcata aagatatggt
     3661 caggcaagcg ctacgtgtaa gtattccgtg gttcacattt gtgaatatca gctttgcgct
     3721 tatcatttta tttcgccaca tactcatcag tgactttgac aagtcgatca gtgcacagac
     3781 tggaatactg cctttaatag acgatattat gggcagtatt attgtttttt cgttcctgat
     3841 actccttttc atttaccgcc ttccggccag atttactcct ctttgtctgg tgatgctgct
     3901 gattctcagt ctgatgtgga gctattgtag ctactgtttt attgtctggt ggcaactgcc
     3961 ttttgcctgg cctctcagtg tcatccttat gcttaccgcg ctggctgcgc tttattatca
     4021 tctgccagcg ttgctacttt tcatcgtccc gttatggctg accgccctac tggccagcgt
     4081 gcagcttaac cagtatgtga atatccggtt tttattagtc tggcttactc ttaccgccat
     4141 actcatttat ggtcgcttta tcctgcagcg ctggtttgat gaagcctggt tgcgttacca
     4201 ggaaaaccgg atgcttatcg cgcgtctcga cgttatggct caccaggatg cactgaccgg
     4261 gaccgctaat cgacgttcaa tggaaagttt tcttggggat gctctccgcc agacggagcc
     4321 gtttgcactg atcatgctcg atgtggacta tttcaaaaac tataacgaca attatggtca
     4381 ccaggctggc gatgcctgtc tggcaaaggt ggcctgtgta gtaaagaggt cgattcgtac
     4441 tccggcagac ctggtggcac gttacggggg cgaggagttt gtcgttgtgc tgccttcgtc
     4501 gtcgctgaat gaagctgcac tggttgctaa acgtattcag acaaacctgc gtgaaaccgc
     4561 actgccgcat gtagcatctg cggtaagcga aacggtcacc gtcagcatgg gcatcaccct
     4621 ttccacagcc ggtgacactg ttaccggcat tattgccaga gcggatgagg ccctttatcg
     4681 ggctaaacaa cagggacgta atcgttgggt aaagtaaaac cagttgcccg gtgtttgata
     4741 cagaagatca ccttgccata ctcagataat taaaactgaa tatttggaag caaaaaagac
     4801 agtcggactc acggaacctt tgcgctggta cagcctgaat atcagataaa attatgtcca
     4861 gccgcagaca ccagttgaca gtggaatatt cctggtgttg tgaacaaggc gacattcaca
     4921 acacgactgt gctcacggaa ttcaaatgcc aaacggatga ttacgatatt cgctacctct
     4981 gcaaagttat attattcgat tttcatgcag atttcgcctc ccggtaattt ccccgataaa
     5041 atgccagtac cctttgcatc gtcacgctgt tccggcactc cgtacagata acgtttctgg
     5101 tccggtcgta ggaactcacg acaccttccg gcgttttcag aaagcgggta atcctggcat
     5161 cttcacgttt ctacttccaa agcaggaaag cctgttccga aggaaaaata ccgcttctcc
     5221 cggcctgata cagatcccca caactttccg ccttttccag gtagtgacgg gctgtaaaaa
     5281 tggttaaccc tgttatcttc cgaagttctc caaacgtcat ccgaccgtgt gttcgtacca
     5341 gttccgtcag gcgcttttgt atttcagctt tctgcgccgg tgtgtaattt ctgctcataa
     5401 gtccccccag ttaaagcctt cccgccgcct tacgccgtct gaatttttcc atcatcagtt
     5461 gtgccggggt tggccctgcc ggatgacgcg gcgctgcaag ttgacggcgt accggcggta
     5521 tgccacaacg gaaatccgaa aagttccggc gctgggtgac tgtgacacca tgagttttgt
     5581 cagcgccatc gttcagtgtt cccagcttgg gctggaaccc ggcggcgcgc tcggtcatgc
     5641 ctatctgctg ccgttcggaa acaaaaacga aaagtcaggc aaaaaaacgt tcagttaatt
     5701 attggctacc ggggaatgat cgaccttgcc cgccgttccg gacagattgc cagcctttcc
     5761 gcgcgcgttg tccgtgaagg tgacgatttc agcttcgagt ttggtctgga agagaagctg
     5821 gtacaccgtc cgggtgagaa cgaagatgca caggttactc atgtctatgc cgttgcccgc
     5881 cttaatcgat cgctgccgac tggtaagccg aactgatttc atgatcagtg ccggaatcag
     5941 gaaaaatagc ccaaccggga atattcaccc ggatgggctg acaaagaaat ttgtaaaagc
     6001 cagaaaaatt tcaggcgtta aatgtagtga taacccaccg acatttcaca agatccgtag
     6061 cctggctggt cggctgtaca aaaacgaacg cggcgaggaa ttcgctcaaa aactactggg
     6121 ccacacctca gagaacacca cgaaactcta tctcgatgaa cgcgataata aagcttacgt
     6181 gatgctctga ttttgttgta aaagaaatgt taaactgaat ttgattgtga tataaccaaa
     6241 aagaccggaa tacagaaatt cgaggaaatt tcgagggaaa acacataacc cgttgattta
     6301 taatcgaaat aaaaagagac cgaatacgat tcctgtattc ggtccaggga aatggctctt
     6361 gggagagagc cgtgcgctaa aagttggcat taatgcaggc taaatcgcct tgctctttaa
     6421 gaatagatga cgacgccagg ttttccagtt tgtgacgaag gtgattgaaa aaacctggcg
     6481 tattgtctgt catcagagat aaaaaaaccg taagcctttt cgtgaaggtt tacggttttt
     6541 tattaaaaat cagtcagcta ttggatggat cacaaagctt ttgcgcacgt tcgataaacg
     6601 gcgccagact cattttctca ccgggctttg ccgggttatc gatttgaatg atggcaatag
     6661 gctgagcgcg cgttttaccc tccgctactt gctgctcggc aatagcattc aagggatact
     6721 gcaccagagt actggggttg atcacataga gcgcctggcc aggccgacag gtcaacatga
     6781 cctcttcccg attaaacgcc cacttgtctt ttcctacttc aaaacgactt acggtaatca
     6841 cctgcggcgc cgccaacgct acgcccgaag tggccagcag aagcgccgga aggagtattt
     6901 ttttcattcg ttatgccagt ccatcagaaa ggttcgaggg ttgcaaacag gctgacgatc
     6961 gccagaacta tgcctccaac tccccattca atttgcgtca tcctgacaaa ccataggtca
     7021 gtccggggat tttcctgtcg catacgtggt acgagaacat accgattcgt cagcgcaatt
     7081 gctaccataa gcaccaccag cgcacatttt aacaaaagca actgtccata agtggtctgc
     7141 cagatagcgg taaatcccgt gataaatagc gtgttgccaa tgcctgtgag caatacgccc
     7201 gccacaaaaa agtgaccata acgagaaaaa ctcatcatgg cgctaatggc atgttgacgc
     7261 cagcgtcctt gagccatgcg catacaataa accactggca acagcccgcc aaaccaggct
     7321 gcggcacaga gcaaatgcag agcatggtta atttgctgta atgttcccgc tacaccatcg
     7381 cgcatcgtcg catgtccaac gcctgccagc aggataaact gagcaacggt tagaataaga
     7441 agccgtcgtt gcatttttac cggcgcaatg actaccaccg ccagcgtgac cagcgcgagg
     7501 ataatttgcc atatccagac cgcgccaaag cgggtttgca gtaccgcgcc ccaaaccgag
     7561 acggaaaaaa catcgggcca gccgccgccc atcagtccgc cctgaattgc cagcataaaa
     7621 gccgcgctga taacgctcca ggcggcggca tgtcgttgca gatgtaaaaa tcgacgcgtc
     7681 attaaacgac gaattgatgc gggtgccagc caggcgccgt aaagcgcgca gccgtagacc
     7741 agcatcaaac tagcaaaatg aataaatcgg agagttatcc agacgaatgt cagcatcatt
     7801 tatttcacgc tgaaggtgta tttccctttt gttttatgtc catccaccga cacaacgtgc
     7861 cagtctaccg tgtaagcgcc agattttaac ggctgctcaa gcgggataat caactgcgtt
     7921 ttatcctgtt catttcgctt tgccgggcgc gttttgatgg actcttgctg agggccagta
     7981 atggttgcgc cgctgaatcc tggctcaatc ccttcaaaaa agttcagagt cagcgcctgt
     8041 ggcgaggccg taacggcagc attcgctgct ggatactgat gcgtcaggtg cgcatgtgcc
     8101 caggccgctg gcgtcgcaaa tgtcgatgcc agcagcagta aagctaaacg tcgcgatggt
     8161 gcagaagaag ccatattcac tattcctttt tgttatacct acgttacaaa gaataacctt
     8221 caacaatcaa tgagtcgagg atcatcattt ccatcttgcc attgccgcgg actcttagta
     8281 ccttctggcg gcaacaaaaa aggagacacg tatgaaaacg aatctggctc agcttgaaca
     8341 agcggaaatg gataaagtca atgtggatct ggcggcagct ggggtggcat ttaaagagcg
     8401 ctacaatatg ccagttgtcg cggaggcggt cgaacgtgag cagccagagc atctacgcgc
     8461 ctggtttcgc gagcggctga ttgcccatcg tctggcttcc gtatcactat cccgactccc
     8521 ttacgaaccc aaagttaaat aaaaattata taacgttaca cttccttaca tgcagacgac
     8581 tacattataa ggcgattctt aacctatgct ttttagaatg gctgtagaga ctatgaaaag
     8641 gaagtcatta tgtcctcctg gaaaattgcc gctgcgcagt acgcgcccct gaacgcttcg
     8701 ccggcagagc atgtcgccca tcatctggaa tatattgagc ttgcggctcg tcaacagtgc
     8761 gaactgctgg tctttccgtc actgtcgcta ttaggctgcg acgaaagaaa taaaccgttg
     8821 cccgccccgc ctgacgaggc gcttttacag ccgctcactc atgcggccga tacccaccat
     8881 atgactatca ttgtgggtat gcctgttgag cataactgcc gcttcgtaaa aggcatcgct
     8941 atttttgccc catggctaac gtcgccgctc atgtttcaca aaagtcatgg cgcctgtatt
     9001 gccaggcagc gaagcgctat caacgtggtg gatgagcagc cagaaggtgg tgatataggc
     9061 ccctcattta cgttattcac aaccagtcaa tgtcttaacg agcctgaact ccatgcttct
     9121 acctcacgct tacaacgttt ttcgcataaa tatgcgctgg ccgtactgat ggccaatgcc
     9181 tgtggcagta gcgcgctgtg ggatgaaagc gggcaactta ttgttcgtgc cgattgcggt
     9241 tcgctattac tgacgggtct gcgcacaacc gagggttggc aaggcgatat cattccatta
     9301 cgctaaggtc tttgggtgag gaatgaatca tgttgcggat tatagacacg gaaacctgcg
     9361 ggctgcaggg cgggatcgta gagatagcct ctgtagatgt cattgatggc aacattgtca
     9421 atcccatgag tcacctgata cgccccgatc gccctattac gccgcaggcg atggcgatac
     9481 accgtattac cgaagccatg gtcgccgata agccgtggat tgaagatgtc ataccgcttt
     9541 attacggtag tgagtggtat gtcgctcaca atgccagttt cgacagacgc gtattacctg
     9601 aattgccggg tgagtggatc tgtaccatga agttgtcgcg acgcctgtgg ccgggaataa
     9661 aatacagcaa tatggcgctc tataaatcgc gcaaactaag cgtacaaacg ccgccggggc
     9721 tgcaccatca ccgggcgctt tatgattgct atatcaccgc cgccttgctg attgatatta
     9781 tgcgaaccac cggctggacc gcggaagaga tggtcaatat cacgggccgt cctgcgctgt
     9841 taaccacttt cccgttcggt aaataccgcg gtaaggcggt atctgaagtc gcaaaacgcg
     9901 atccgggcta tttacgctgg ctttttaata accttgataa tatgagcccg gaacttcgcc
     9961 tgacgcttaa acactacctg gaagatgttc aggctggcga gcaacgcagc aatggaacac
    10021 cacaataacc cgcgacgctc acaagccgtt gcgggcgcgc gcgtctatgc gctatgtaag
    10081 gttccctgcg ccaggccgat taaaaaggcg aactccagcg cgacgccttc gtaggattta
    10141 aaccgccccg acttaccacc gtgcccggag tccatatccg tacataacag cagcagacgt
    10201 tggtccgttt ttagctcgcg taattttgcc acccacttcg ccggttccca gtattgcacc
    10261 tgggaatcgt gcaatcctgt cgtcaccagc aggtgcggat agtcctgcgc tttgacattg
    10321 tcataaggac tatagctttt catatagtca taatactcaa tatcctgcgg gttcccccac
    10381 tcttcaaact cccctgtcgt taatgggatc gactcatcca gcatcgtggt taatacatca
    10441 acaaagggca cctgggcaat aacgccgtgg aaaagctcgg ggcgttcgtt gatagcgacg
    10501 cccattagca ttccgcccgc gctcccgccc atcccataac acagcgacgg tgaaccgtaa
    10561 cccagtttta ataaggcatc gcaggcatca agatagtcat taaaagtatt ccgctttttg
    10621 aggaatttgc catcttcata ccactgctgc cccagctcac cgccgccgcg aacgtgtacg
    10681 attgcgtaaa caaagccacg atccagcaag ctcagtcggc tgctgctgaa gtcggcgtca
    10741 atactggaac cgtaagatcc gtaaccgtaa accagaagcg gattttgccc tttacgaaaa
    10801 tacttctgat gataaaccag cgataccggc acttcgacgc cgtcgcgtgc ggtgatccac
    10861 aggtgttcgc tctgataaca gccagaatca aacccaggca cttccgtctg tttaagtacc
    10921 cgtcgttctc cggtatccat atccagttca aacaaggtat ctggcgtcgt cattgaagaa
    10981 tagccgtaac gcagccggga ggtctcaggt tcgggattat aggcaagcca cgtcacgtaa
    11041 gccggatcgt caaaggcaat gcctatcact tcacgggttt tacggttaat ttgccgcagg
    11101 ctggtaagcc cccgttgacg ctcttcgacc actaaccagt cggtaaacag ggtaaaccct
    11161 tccagcataa tatgctcgcg cggagggatc agctcttccc aggcgttttc attgcgcacg
    11221 cgggtacggt acaacccaaa gtttttaccg ttccggttag agcgcaggta aaacttatgt
    11281 tgatagtgat cgagactata ttcatggtct ttgcggcgcg gtaagaatga aaacggctcg
    11341 gcatcggcca gttccgcgtc aagtaatagc acttcgctag tggtggcgct ggcaagatga
    11401 atcaccacat aatgctgcga agtggtttta tgcaggctga cataaaaggt atcgtctttc
    11461 tcctcatata ccagttcatc ttgcgatgac ggagtgccaa tcgtgtgccg ccaaacctga
    11521 tagggcagca gcgtcttctt atgcttacgc acatagtaaa gagtcaggga atcattggcc
    11581 cagacaaatt caggcgcaac gttatccagc agttccggat accagttacc gctttcgagg
    11641 ttacgaaaac gcaacccata ctgacgacgg gataaataat cttctgccag cgccatgatg
    11701 gtattatccg gcgtaatggc aagcccgccg agcgtataaa attcgctgtg cgcggcccgc
    11761 tggttcgcat cgagcaaggt ttcccacaca ttccactctt cgcttaacgc cgattgtcgt
    11821 tgatagatgg catattcgca gccgggttca tagatataac ggtagcgata gccgtttttc
    11881 acatacggag cggaaacttc tctgggcggg atgcgatcga taatttcttt tagaatgcgg
    11941 tcctgtaacg cctgctgaga ggacatgacc ttccggccat actcattttc ctgatgcagg
    12001 taatcaagga cttccggctg cgagcgagtg tcatctcgca gccagtaata attatcaatg
    12061 cgcgtatcgc catgtacggt catggcatag ggaattcgat tggcttttgg caacatgtcg
    12121 ttttttcttt tgcgttaata tttgttatat atcacgcggc aaacacagcg gcttagcatg
    12181 gtagtcccgg tccgctcacc tcggtaagcg cctgagatgt cactgcttcg ccgctatctt
    12241 gcaacatgaa tgacgtaaac tatccatcct ataagggtgg caaaagacac gcatgatgca
    12301 agcgaaacat gttacttaat ggcaggttat cagcctggta gcgcctgttt ttgctgctgc
    12361 aagtcctgct cgataccgtc ccgaacctcc tgaggaattt ttagcgcgtc tcctaacgca
    12421 ttcagatagc tacgttccat aaagtggtca atatcaatgg cggcgcagct caggaagtag
    12481 atttccaggg cttcttcttc attgcgaacg ccctgtgcca gacgttgtgg atcaagcggc
    12541 tgctcaatag ctttctcgat aaacacacgc ccttgctctt ccacacctga ttctcgcagt
    12601 tggtgctcaa tcgccgcgcg ttctttggca tcaatatgcc catcgctttt tgcagcaaaa
    12661 accagcgcta ggatcagtcg ctcagtgcga atatccagcg gcgtactttg gctgccgaat
    12721 tgcggctccc cctgatgcgc agcgcgtact ttatctttgt acttattcca caatacggaa
    12781 ctcgccaccg cgccgccgcc caccagcaaa gcgccagtac cgtatttggt taataatttg
    12841 cgcgaagact tattggcgac caacagtcca gccagaccgc ccagcgcgcc gggaaccagc
    12901 agtttattta acccctgttc accggaaggc gatgcagaag cgcctttttg cccaagaagt
    12961 gattgtaatt ggttcaacca gttagccata gtacccctca aatacagacc aataatggtc
    13021 aagcgtacct gaggggatgt caggaattgt ctgttccggc aaaagaagcg caaattacgc
    13081 tgctagcggg gcttatattc cgccttgccg gctttgcaat caacgatgac ctgataatgg
    13141 atatcggcgc ttttaccgcg aacggttagc ggaacggtcc atttatcatt ttgacccaca
    13201 acgtcctgca cattaaccca cgcgaccggg tcagcctgcc cgaccttttt ttggtcgtct
    13261 gcccaccgca cgatacgatt ttgctggtag tcgcgcttca cgcttgccgc aatcccggcg
    13321 gcatccagcc cttcgcactg cggaaactta accgatttac tctcggtgga tgccgcaaat
    13381 gccgatacgc tggcggataa caacagcagg ctcaacaacg ctcctctttt attcatactt
    13441 ttctccttag cacaatgatt caggaaaagc atggtacaaa acgccgagag cgcaagtgtg
    13501 ggttcaggcg gcttgctttt tcgttttact cgcggcgtcc ttttcaaccg cctgcggaga
    13561 aggcaactta ccggttttga ggatcgtgct taacacctct ttatgttccg ccatccacag
    13621 cgacaacgcc tcgcgctgcc catcttccag cacgactggc gactgctcaa gccaggtatc
    13681 aagaagatcg gcagtatcga gcattttgtc ccaggcgtcg gcttcctttt tactggtaaa
    13741 tgacatcttc tcctcaccct cgcgaatgac tacgtattta acttcaaccg ccattttgca
    13801 gccccttatt tacctgtgtt tatatacagt atattgcaag gcggcaagaa aagcaattta
    13861 ttcgaaaaga catacgcaaa cgttttcgta tatactgcgc gcaggtaaat aaggggacag
    13921 aaatatgacg ctattaggca ctgcgctacg tccggcagca acgcgggtga tgttattagg
    13981 ggcaggtgaa ttgggaaaag aggtggcgat tgaatgccaa cgcctgggga tcgaggttat
    14041 cgccgtcgat cgctatcctg atgctcccgc catgcatgtg gctcaccgtt cacacgtcat
    14101 taatatgctg gacggcgagg cgctacgtca tgtgattaca gaggaaaaac cgcattatat
    14161 cgtgccggaa atagaagcga tcgccaccga tacgctgcgc gagctggagg gcgaagggct
    14221 gaatgtcgtg ccttgcgccc gtgcaacgca gctcacgatg aaccgcgaag ggatccgtcg
    14281 cctggccgca gaagaattag gtctgccgac atcgacgtat cgctttgccg acagtgaggc
    14341 cagttttcat gatgcggtag ccgcagtggg ttttccttgc atcgtcaaac cggtcatgag
    14401 ctcttccggc aaaggccaga gctttatccg ctcggccgaa cagctcgcgc aggcatggga
    14461 gtatgctcaa cagggcggac gcgctggcgc gggtcgcgtg attgtggaag gcgtggttaa
    14521 atttgatttt gaaattacgc tgctcaccgt tagcgccgtc gatggcgtgc atttctgcgc
    14581 gccggtcggt catcgtcagc aagatggtga ctatcgcgaa tcctggcaac cacagcagat
    14641 gagcgaactg gcgctgaagc gggcgcaaga gattgctcgt catgtggtac tggcgttagg
    14701 cggtcatggt ctgttcggcg ttgaactctt cgtctgtggc gatgaagtca ttttcagcga
    14761 agtctcccct cgcccgcacg ataccggaat ggtcacgttg atttctcagg atctttctga
    14821 gtttgcgctg catgtgcgcg cctttctggg aatgcccata ggcgctattc gccagtatgg
    14881 tcccgctgcc tcggccgtga ttctgccgca gcttaccagt caaaatgtga cgtttgatga
    14941 tgtacacgcg gcggtagggg ccggagtgca ggtacggctg tttggtaagc ctgagatcga
    15001 cggcacccgt cgtcttggtg tagcgttagc gacaggtgaa aacgttgaag aagcggtgat
    15061 aagagcgaaa aaggccgcca gccgcgtgac ggtaaaaggc taatgcgcca tcgcctgatg
    15121 gcgacgttag cgcattttta tcaggcctgc ctgatcgcca ctcgtaagcc cgataagcaa
    15181 gcgccatcgg gcatttaacg gcttactgct tcgcgccttc taccgcttcg cgcgccagtt
    15241 tggtgatgcg atcgtaatca cccgcttcca gcgcgtcggc cggcaccagc caggaaccgc
    15301 cgatgcacaa cacgcttttc agcgccagat agtcacgata gtttgccaga gagatgccgc
    15361 cggttgggca gaaacgtacc tgagagaacg gaccggcaat cgcctgcaac gctttagtgc
    15421 cgccattcgc ttccgccggg aagaatttga actctttcag accatagtcc atgcccaaca
    15481 tcagttcaga aacggtgcta ataccgggaa tcaatgggat agtgcctgcc gtcgcggctt
    15541 tcagcagtgg ctcagtcagt cccgggctaa tcgcaaactg cgcgcccgcc tccgtcacct
    15601 ccgccaactg ctgcggattg agaacggttc cggcgccgac aatcgcttcc ggcacgtctt
    15661 tagcgatagc gcgaatagca tccatcgcgc aggccgtacg taaagtcact tccagaacgc
    15721 gaacgccccc ggccaccagc gctttagcca tcggcaccgc gtgctccagt ttattgacta
    15781 caatgaccgg gacaaccggg ccggtggtca ggattgcttc tgcacttgtt ttccagtttt
    15841 tcatcggaat tcttctctcg cctgattact agtgtgtcat cttaaaaagt gatacaggtt
    15901 gcgccctgct ccgcacccga cagcttttcg cgcagcgcgc caaacaactc acgccccgtt
    15961 ccgacgcgcg acgcgctcag gtccggaata tgaggctgac gagcggcaag ttccgcctcg
    16021 tcgaccagca gagttaactc acctgtctgc ccattcacgc gaatgatgtc gccatcgcgc
    16081 acttttgcca gtaagccgcc atcgtaggct tccggcgtta cgtggatagc tgaaggcact
    16141 ttacccgaag cgcctgaaag tcgtccatca gtaactaacg cgattttgaa acggcggtcc
    16201 aataatacac caagtggcgg catgagttta tgtaattctg gcattccatt cgcttttggt
    16261 ccctgatgac gcacgacaac gacacaatcc cggtcaagca ggcccgcgtc aaacgcaggc
    16321 agcacatcat gctgactttc aaataccatg gcaggcgctt caatgatctg gttttcaacc
    16381 ggtaccgcag acgtcttcat tactgcgcgc cccagattac cgcttagcac cttagtaccg
    16441 ccgtgaggag agaacggctt atcaaaagag gcaatgacat cgttatccag tgacctttcc
    16501 gcgccttcac gccagtccag ctcgccgttg ttgagccagg gctccagcgt atagcgtttc
    16561 aggccgaagc ctgcgacagt attaacgtct tcgtgcagca atccggcatt gagcagctca
    16621 cgcatcaata ccggtacgcc gcccgccgcc tggaagtggt taatgtccgc cggaccgttc
    16681 gggtacagac gcgccatcaa cggaaccact tccgacaaat ccgagaagtc atcccagttg
    16741 atcagaatgc ccgccgcgcg cgccattgca accagatgca tggtgtggtt ggtggaaccg
    16801 ccggtagcca gcagcgcgac aatgccgttc accacgactt tttcgtcgat cattttaccg
    16861 agcggcatcc acgtattgcc gttgccggta agacgtgtta cctgacgtgc ggcagcggca
    16921 gtcaatgcct cgcgcagcgg cgcatccgga tgcacaaacg aggaacccgg caactgcatt
    16981 cccataaact ccaccaccat ctggttggtg ttggcagtgc cgtaaaatgt acaggtgccc
    17041 ggcgcatggt aagaggcggc ttccgactcc agcagcgcca ttctgtctac ttttccttcc
    17101 gcatatagct gacgaatacg gactttttct ttattcggca ggccgctcgc catcgggcct
    17161 gacggaacaa aaatcgcggg taaatgacca aaagagagcg cggccatcgc cagccccgga
    17221 acaattttgt cgcatacgcc gaggaataac gcgccgtcaa acatattgtg agaaaggcct
    17281 actgctgccg acatcgctat cacttcgcgg ctgagtaatg acaactccat gccatcctgc
    17341 ccttgcgtaa cgccatcgca cattgccggt acgccgcctg cgacctgacc taccgcattc
    17401 acggaatgca gggcctgacg aataatctgc ggataatgtt catacggttg atgcgcagag
    17461 agcatgtcat tgtaggaggt aatgatggcg atattattgc gcaacatact tttcagcgag
    17521 gctttgtcct ctggctgaca ggcggcgaag ccatgcgcca ggttgccgca ggccagttga
    17581 gatcggtgga ccgtggcggt tttcgcctgc tcaatgcggg caagataggc ttttcgggtc
    17641 tgctgcgagc gttcgacaat gcgctgtgtt acgcgtaaca aattaggatt catagaggct
    17701 cctgaaattt atctgtccgg ctaccgggtt taccatgcgt ttcatcaatg tggaaagaca
    17761 gtgaaataca tgatgtccgg ggataatggg gcaaaatcgt ttcaggcagt gtaataaaaa
    17821 aagcctcgca ggtgaatcca cacgaggctt aaaagtgcaa aaatgattct acaatctgtg
    17881 ttagatcatg ttaccggtaa aataccacct aagagtgagt ggcaaattta ctcaaactca
    17941 ttccacgaac gaccgtcacg ggtaatcatc gccacggacg ctaccggtcc ccaggtgccc
    18001 gcctgatacg gcttcggcgc gtcgttgtcc atcgcccatg cttcggtaat ggagtccacc
    18061 cacttccagg cttcttccac ttcgtcacgg cggacaaaca gcgcctgaat gccacgcatc
    18121 gtttccagca gcaggcgctc atatgcatcc gccaggtgcg tctgattaaa ggtctcggag
    18181 tagctcagat caagcttcgt gatttgcaga ttatgcttat gatccagcct cggtactttg
    18241 ttaagtacct gaatatctac gccttcatcc ggctgcaggc gaatcgtcaa tttgttctgc
    18301 ggcaggtctt gccaggactc tttaaagaga ttcagttcag gcgtcttgaa ataaaccacg
    18361 acttcagagc acttagttgg cagacgcttg ccggtgcgca gatagaatgg cacgcccgcc
    18421 caacgccagt tatcgatgtc gacgcggatc gcgacgaaag tttcggtgtt gctgctttta
    18481 ttcgcgccct cttcttccag atagcccggc accttttgac cctgcgcaaa gcccgcggtg
    18541 tattgaccac gaaccgtttt ttcacgcacg ttggagcgat caatacggcg caacgatttc
    18601 aacactttta ctttttcatc gcgaatactg tcggcgctca ggtcagacgg cggtgacatg
    18661 gcaatcatgc agagaatttg cagcaagtgg ttctggatca tatcgcgcat ctgaccggcc
    18721 tggtcaaaat atccccagcg cccttcaatc cccacctctt ccgctacggt aatctcaacg
    18781 tgatcgatag tgcggttatc ccagttatta acgaataacg agttggcaaa acgcagcgcc
    18841 agcaggttga gaaccgtttc tttgcccaga tagtggtcga tacgatatac ttggcactct
    18901 tcaaagtatt cgccgacccg atcgttaatc tcacgcgagg tcgccagcga agtacccaac
    18961 ggtttctcca tcacgacacg cgccggtttg gcgttgagtt tagcctcccc taaccctttg
    19021 caaatagcgc caaacgtgct gggcggcatc gcaaaatagt taatggtggt gcggtttttt
    19081 tgatccagca tatcgcccag gcgactgaac gcaggcgtat cgttaacgtc aagattacaa
    19141 aaatccagac ggccgctcag cgtatcccac aagccttcat caattttttc cttcatgaag
    19201 gtttccagcg cctcacgcac aacgtgggta taagcttctt tatcccagtc cgcgcgcccc
    19261 accccaatga tccgggtatc cggatggatc tggccggctt tctcaagctg atacagggaa
    19321 ggcagcagtt tccggcgcgc caggtcgcct ttcgcgccga aaatgaccag gtcacatgcc
    19381 tgggctgttt gcgttaccgc catgtcattc tcctcagtta atctcctggt actttagcca
    19441 ggatatcgtt gtaattttat tacacagcac tgtactgctt ttacgagatt acggaaaccg
    19501 taaacgcctt ttcataggtg aaccggcgtt tgattggcaa tataatcggc aaaacgccta
    19561 ataaaattgt cgcttttcca cacaagctgg aacttaaaat ccgacgtcgg tcatgtaatg
    19621 aaaaaaaacg acaccttttt tagccatttt gccccctttg acagccgcca ggagtaatat
    19681 ctaacaaaac gcgctcggtt tcgcgcatca ttgaaatcgc taatacccat gagccttgct
    19741 aatcatgaat atgctggaaa aagtccagtc tcaactggaa catttaagca aatctgaacg
    19801 aaaagtcgcc gatgttattc tggccgcccc aggcagatcg attcacttaa gcattgccat
    19861 gctggcccag gaagctaacg ttagcgagcc aacggtgaac cgtttctgtc gcagcatgaa
    19921 tacccgcggc tttcctgatt ttaaactgca tctggcgcaa agtctggcaa atggcacccc
    19981 ctatgttaat cgcaatgtgg atgaagatga cagcgttgag gcctatacag gaaaaatctt
    20041 cgagtccgcc atggccagtc tcgaccatgt tcgtcagtcg ctggataaat cggccgtcaa
    20101 ccgcgccgtc gatttactga cccaggcaaa aaaaatcgcc ttttttggtc ttggttcctc
    20161 cgccgcggtc gcgcatgacg ccatgaataa gttttttcgc ttcaatgtgc cggtgattta
    20221 ctccgacgat atcgtgctgc aacggatgag ctgtatgaat tgtaacgatg atgacgtcgt
    20281 cgtgctcatt tcgcatactg gcagaaccaa gagcctggtg gaactggcgc agttggcgcg
    20341 ggaaaacgat gcgatggtga tcgccctgac ctccgctgga acgccgctgg cgcgcgaagc
    20401 cacgctggcc attaccctcg acgtaccgga agatacagac atttatatgc ccatggtctc
    20461 tcgacttgct caactgaccg tgatagatgt gctggcaacg ggatttactt tgcgtcgcgg
    20521 ggcaaaattc agagataact tgaagcgtgt caaggaagcg ctcaaggaat cgcgttttga
    20581 taaagaatta ctcatcagga gtgatgaccg ctaaaagcaa taacaatgtt ctaccctttt
    20641 cgtcatccgg ggacgttcat tttataccgt taaggtttca gaacgaccgg atcaatgttc
    20701 acgcaacacc aagttgtttt agtcaacgga gtattacatg tccagaaggc ttcgcagaac
    20761 caaaatcgtt accacgttag gcccggcaac tgaccgcgat aacaaccttg agaaggttat
    20821 cgccgcgggc gcaaacgtag tacgtatgaa cttctctcac ggctcgccgg aagatcataa
    20881 aatgcgtgct gataaagtcc gtgagattgc cgccaaattg gggcgtcatg tggctatttt
    20941 aggcgacctg caagggccaa aaattcgcgt ttccactttt aaagaaggca aagtgttcct
    21001 caatatcggg gacaaatttc tgttagacgc taacctgggt aaaggcgaag gcgataaaga
    21061 aaaagtcggc attgattaca aagggttgcc ggcagacgtc gttcctggcg atatcctgct
    21121 gcttgacgat ggtcgagtgc agttgaaagt gcttgaagtc cagggcatga aagtctttac
    21181 cgaggtcacc gtcggcggcc cgctgtctaa caataaaggc attaacaagc tcggcggcgg
    21241 gctttctgct gaagcgctga ccgaaaaaga taaagccgat attcaaaccg ctgcgctgat
    21301 aggcgttgac tatctggcag tctccttccc gcgctgcggc gaagatctga actatgcacg
    21361 ccgcctggcg cgcgacgccg gctgtgacgc gaaaattgtg gctaaagtcg aacgcgccga
    21421 agcggtatgc gatcaaaacg ctatggacga tatcattctg gcctctgacg ttgtgatggt
    21481 cgcacgtggc aacctgggcg ttgaaatcgg cgatccggag ctggttggta tccagaaggc
    21541 gctgattcgc cgtgcgcgtc agctaaaccg cgcagtcatc accgcaacgc agatgatgga
    21601 gtcgatgatc accaacccga tgccgacccg tgcggaagtg atggacgtgg cgaacgccgt
    21661 cctggatggc acggatgcag ttatgctgtc tgccgaaacc gcagccggtc agtatccttc
    21721 tgaaaccgtt gccgcaatgg cgcgcgtctg tctgggcgca gaaaaaatcc ccagcatcaa
    21781 tgtgtctaaa caccgtctcg acgtgcagtt cgacaatgtt gaagaagcca ttgccatgtc
    21841 tgcgatgtat gcggcaaacc atctgaaagg cgttaccgcg atcatcacca tgacggaatc
    21901 cggtcgtacc gcgctaatga cttcccgtat cagctccggc ctgccgattt tcgccatgtc
    21961 gcgccatgaa cgcacgctga acctgaccgc gctctaccgc ggagtaacgc cggtgcattt
    22021 tgatagcgcg gctgatggcg ttgtcgcggc gcatgaagct gttaatctgc tgcgcgataa
    22081 agggtatctg gtttccggtg acctggttat cgtgacccag ggcgatgtca tgagcaccgt
    22141 cggttcaacc aataccacgc gtattttgac cgttgagtaa agctccccct ggcctgctca
    22201 tcaggtaata cagggtttgt cagcataaag cctctcttac gagaggcttt atttatttga
    22261 tgggataaag atctttacgc ttatacggct gaatctcgcc tggcttgcgg gttttgagca
    22321 acttcagaat ccaggtgtac tgttccggat gcgggccgac aaaaatttcg acctcttcgt
    22381 tcatccgtct ggcgatagtg tggtcgtcag ccgtgagcag atcgtccatt ggcggacgaa
    22441 tctggatagt caggcgatgc gttttaccat tatacaccgg gaaaagcggt atcacgcgtg
    22501 cgcggcacac tttcatcagc cgaccaattg caggcagcgt tgctttgtat gtcgcaaaga
    22561 aatcaacgaa ttcactatgc tccgggccat gatcctggtc cggcaggtag taaccccagt
    22621 agccctgacg aacagactga ataaagggtt taatcccgtc attgcgcgca tgcaaacgtc
    22681 cgccaaaacg ccgacgcacg gtattccaga tatagtcaaa aaccggatta ccctgattat
    22741 gaaacatcgc cgccattttt tgcccctgag aggccatcag catggctgga atgtcgacgc
    22801 cccagccatg cggtacgaga aaaataactt tttcgtcgtt acgacgcatc tcctcgataa
    22861 tctccagacc ttcccagtca acacgctgtt gaattttttt cggaccgcgc atcgccagct
    22921 cagccatcat cgccattgcc tgcggcgcgg tggcgaacat ctcatcgaca atcgcttcgc
    22981 gttcagcttc gctacgctgc ggaaagcaca atgacagatt aattagcgcc cggcgacgag
    23041 aactcttccc cagccgtccg gcaaaacgcc ccagcgtcgc cagcaaaggg tcgcggaatg
    23101 atgccggcgt taatgcgatc cccgccattg ccgcagcgcc caaccaggcg ccccaatact
    23161 gcggatagcg aaaggatttt tcgaattcag ggatatactc actattattt tttttggttt
    23221 ccatgctttt ccagggtctg ctgacgcgaa aaggaattgt gaatagtgta gcgatgtctg
    23281 cgccgcacac aaaacaaaac agccggcaca catcgcgtac cggctctgtc aacgcatttg
    23341 ttaatcgaag cgcagttgcg gcagaatctc tttcacctgt gccaggtatt cacgacgatc
    23401 tgaccccgtc agaccttccg tgcgcggcaa ttttgctgtc agagggttaa cggcttgctg
    23461 gttgatccat acctcataat gcagatgcgg ccctgtggaa cgcccggtgt taccagaaag
    23521 cgcaatacga tcgccacgtt tcactttttg ccccggtttc accagcagct tacgcaagtg
    23581 catgtaacgt gtggtgtagg tgcgtccatg acgaatcgca atgtagtaac cggcagcgcc
    23641 gctacgttta gcaaccacga cctcgccatc ccccaccgac agcaccggcg taccctgcgg
    23701 catcgcaaag tcaacgccac gatgcggcgc aacgcgtccg gtaaccgggt tcagacgacg
    23761 cggattgaag ttggaggaga tgcggaactg tttggcggtc gggaagcgta aaaagccttt
    23821 cgccaggcca acaccgttac ggtcatagaa tttaccgtca gcggcgcgaa tggcgtagta
    23881 atctttacca tcggaacgca tacgcacgcc caacaactga ctctgttcac gcttgccatc
    23941 cagcatctca cgcgacatca gaaccgaaaa ttcatcgccc tttttcagct tccgaaaatc
    24001 catctgccac tgcattgctt ttatcactgc gctgatttcg ctgctggtta aaccagcctc
    24061 tttcgcgctg gcgacaaagc tgccccctac cgtgcctttc agcagactgt tgacccagtc
    24121 cccctgctgc atttcactgc tcattttaaa accgttggca gtgcgatcgt aggtacgcgt
    24181 ttcacggcgg gagacttccc atgtcagacg ctgtaaatcg ccatcggcgg tcagtgtcca
    24241 ggaaagctgt tggccaattt tcagattgcg cagctcctta tcagaagcgg caagtcggct
    24301 aatatcgctc atatcgatgc cgtactgatt cagaatactg cttaacgtat cgcctgtgga
    24361 gacgacgtat tcatggacgc cgacttcgcc tgcggtttta tcgtccagct catcctgagg
    24421 aatagcttca tcttcctgcg cggcctgatc gatgggttcg ctggcctccg gtaagaggga
    24481 acgaatctcg cttttctcca gttcaatagt tttaacgatt ggtgcggatt ctgggtggta
    24541 aacatagggc cgccatacgg cgacggccag tgtcagaacg gtaagtgacc ccagcataac
    24601 gcggtggggt cggggcagat tattaaatgc cagggcgaca gagccggcta tctgttgcac
    24661 gtattcactt cctcgttaat ctcctttcag gcagctcgca tactggttgg ctaattggct
    24721 taaaaacgct gaatagcttg ttttacccag tttaatgttc gtcccgaggg ggtccagtgt
    24781 tcccattcga acggatgtcc ctctcgccac ggcttccacg accgctggcc tgaattgtgg
    24841 ctcagcaaaa acgcaggttg ctttttgctc aaccaactgt gttcttattt catgtaaacg
    24901 ctgcgcgcca ggttgtatct cagggttcac ggtaaagtga ccgagtgggg tgagtccgta
    24961 gtgtttttcg tagtaaccgt aggcgtcatg aaaaacgaaa taccctttcc ccttgagcgg
    25021 cgcgagctcg ttaccgacct gtttatcggt tgcggctaat tgtgcctcaa aatccttcag
    25081 gttggcgtcg agtttagctc gactttgcgg cataagttcc actaattttt catggattgc
    25141 aaccgctgta gcccgcgcta tctctgggga gagccaaaga tgcatgttat attcgccgtg
    25201 atggtgatgt acgtcacctt tttcctcatc ggcgcccgta tgcgcatgtt catcctcatc
    25261 atcatccgcg cccttcatga gtaacggttt tacatcggca agttgcgcaa tggtaacctg
    25321 cttattatca gggatattcc tgaccgactt ctccataaag gcttccattt ccgggccaac
    25381 ccagacgact aagtccgcgc cctgtaagcg ttttacgtct gatggacgca atgaataatc
    25441 atgctcggat gccccatccg gaagtaatac ttgcgtatcc gtaacgccat cagcaatggc
    25501 ggaagcaata aacccaagcg gtttaagcga agcgacaacg gcggcgtcgg cagcctgggt
    25561 tgcactcccc caaagcgcgg cggataatgc tgcgaaaaga agcgtatttt tctgtaacat
    25621 aatgcgacta atcatcgtaa tgaatatgtg aaatgtgata ttataacatt ctatcacttc
    25681 tgcaagccta aaattaacat gacaagttta gtttcactgg aaaacgtctc ggtctcattt
    25741 ggtcaacgcc gcgtcctctc tgacgtgtcg cttgaattga gccccggaaa aattttaacg
    25801 cttctcggcc ctaacggtgc ggggaagtca acgcttgtac gcgtggtttt aggactggta
    25861 gcccctgatg aaggggtgat caagcgcaac gggcaactcc gtatcggcta tgtcccgcaa
    25921 aagctctatc tcgataccac gcttccgctg acggtaaacc gatttttacg tttacgtccc
    25981 tgcacgcaaa aaacggatat tctcccggcg cttaaacgcg ttcaggccgg acatttgatt
    26041 gacgcgccca tgcaaaaact ctccggcggt gagacacagc gcgtactgct ggcccgtgct
    26101 ctgcttaaca ggccgcagtt gctggtactt gatgagccga cgcaaggcgt ggatgtcaac
    26161 ggccaggtcg cgttatacga ccttatcgat cagctgcgcc gtgaactcga ttgcgccgtt
    26221 ctgatggtgt cgcatgatct acatctggtc atggcaaaaa cggatgaagt gttatgcctg
    26281 aaccatcata tttgctgttc cggcgcgccg gaagtggtgt ctatgcatcc ggaatttatc
    26341 tctatgtttg gcccgcgtgg cgcggagcaa ttagggattt atcgccatca tcataatcat
    26401 cgccacgatt tacagggtcg tattgtactg cgccggggaa atggtcactc atgattgaat
    26461 tattactgcc cggctggctg gccgggatga tgctggcctg cgctgctggt ccgttgggct
    26521 catttgtggt ctggcgtcgg atgtcctatt ttggcgatac gctggctcac gcgtcgcttc
    26581 tgggcgtggc gtttggcctg ttgctggacg ttaacccctt ttatgcggta atcgccgtta
    26641 cgctgctgct ggcctccggt ctggtatggc tggagaaacg ccctcacctc gcgattgata
    26701 ccttactggg cattatggca cacagcgcct tgtctttagg actggtcgtg gtcagcctga
    26761 tgtccaacgt ccgcgttgat ttaatggctt atctgtttgg cgatttgctg gccgtgacgc
    26821 cggaagatct tatctcgatc gctattgggg tcgttattgt gctggccatt ctcttctggc
    26881 agtggcgcaa cttgctgtca atgactatca gtccggatct tgcctttgtc gatggcgtga
    26941 agttacagcg cgtgaagctg ctattgatgc tggtaacggc gttaaccatt ggcgtaacga
    27001 tgaagtttgt cggagcgctg attatcacct cgctgctgat tatccccgcc gcaaccgcgc
    27061 gtcgctttgc ccgtacgccg gagcagatgg cgggcgtcgc cgttggtgta ggtatgatag
    27121 cggttacagg tggactgacc ttctcagcct tttatgatac cccggcaggg ccatccgtag
    27181 tgctgtgtgc cgcgctgctg tttatcttca gtatgatgaa aaagcaggca agctaagcgt
    27241 gtgttgcccg gtggcgctgc gcttaccggg cctacaaaat cgcccaggcc tgatgagcgc
    27301 agcgacttca ggcgttaagg catctctggc ggcgtaatac caaagtggtt ccaggcgcgc
    27361 accgttgcca tacgcccacg cggcgtgcgc tgcaaaaagc cttgctgaat cagatacggc
    27421 tccagcacat cctcaatggt ttcacgctct tcgccaatcg ccgccgccag attatccagt
    27481 cccaccgggc caccgaagaa tttatcaata accgccagca gtagcttgcg atccatataa
    27541 tcaaaccctt ccgcatcgac gttcagcata tccagcgcct gcgcggcaat ttccgctgaa
    27601 atagccccgt catgcttcac ctcagcaaaa tcacgcacac gtctgagcag gcggttggct
    27661 atacgcggcg taccgcgcgc ccgacgcgcc acttccagcg cgccgtcatc gctcatctca
    27721 agccccatgt gccttgcgct gcgcccgacg atgtgctgca gatcgggcac ctggtagaac
    27781 tccaggcgct gcacaatacc aaaacggtca cgtagcgggg acgttaacga cccggcgcgc
    27841 gtcgtcgcgc caatgagcgt aaacggcggc agatcgattt taattgaacg tgcagccggc
    27901 ccttcgccaa tcataatatc caactggtaa tcttccatcg ccggatagag tacctcttcc
    27961 accaccggtg aaagccggtg gatctcatca ataaacagca catcatgcgg ttcaagattg
    28021 gtgagcatag ccgccagatc gcctgctttt tccagcaccg ggccggacgt ggttcggagg
    28081 ttgacgccca tttcattggc aacgatattc gccagagtcg ttttacctaa ccctggcggg
    28141 ccgaaaatca gcaagtgatc taatgcgtcg ccacgccgtt ttgccgcctg aataaagatc
    28201 tccatctggg agcgcacctg cggttggccg acatattccg ccaataactt cgggcgaatg
    28261 gcgcgatcgg cgacgtcttc tgcgatcgtg gcgcctgctg aaatcaggcg atctgcttct
    28321 atcatccttt acctcatagc gcggcgcgta acgcgtcgcg aatcagtgtt tcactgcttg
    28381 cgtccggacg ggcgatctta cttaccatcc gactggcttc ttgcggttta taacccagcg
    28441 ccaccagcgc agcaactgct tcttgttctg catcttccga ggttgggctg gccggcgacg
    28501 tcaataccag atcgaccgct ggcgtaaaga gatcgccatg tagcccttta aagcggtctt
    28561 tcatttcgac aatcagcctt tcggcggttt tcttgccgat acccggcagc ttcaccagcg
    28621 cacccagctc ttcgcgctca accgcattca caaactgctg cgccgacatg ccggagagga
    28681 tcgccagcgc cagcttaggc ccgacgccat tcgttttaat tagctcttta aatagcgtgc
    28741 gctcttgctt attgttaaat ccgtacagca actgcgcatc ttcacgcacc acgaagtggg
    28801 tgaagacgat tgcctcctgc ccggcctccg gcagctcgta aaagcaggtc ataggcatat
    28861 gtacttcata gcctacgccc cctgtctcca gcagcacgat cgggggttgt ttttcgagaa
    28921 taatgcctct gagtctgcct atcacatgac gctcctgcgt aaagggctga aaagataatg
    28981 cactatcata aaaaaagact ggatgtttat ccagatgaaa aacacttatc ccgatatttc
    29041 tgtactccga caacccgcga tagttaacga cgggcacgct ccccgctgcg tacaaaataa
    29101 gtcgtacact cattgacaac tttttgcgtc ctacgcgaat aactttttgc caacatgccg
    29161 tggcgcaagt ttggtagtct tcaataatga gtatcctgat aacactaata ctgtatccag
    29221 tacgaatgcc aacagcggaa catcggtccc cccaaaaaac agacccgaga atagatttaa
    29281 taaaattaac cactagcgct gaatttaatc gcatgttgtt ttatcgtcgc gcacaacata
    29341 ttttaattca ccatgacaca ataaatattg tgcaaactca tttttcatgc catcgaaatt
    29401 cacggctggt atcccttctg aat
//
LOCUS       DAJVSD010000025        29179 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.025, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000025 DAJVSD010000000
VERSION     DAJVSD010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 29179)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29179)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29179
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.025"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            31..972
                     /gene="iaaA"
                     /locus_tag="OQP62_000963"
     CDS             31..972
                     /gene="iaaA"
                     /locus_tag="OQP62_000963"
                     /EC_number="3.4.19.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-aspartyl-peptidase"
                     /protein_id="HCS1720577.1"
                     /translation="MNKAVIAIHGGAGAIARAQMSHEQELRYIQALSEIVESGQKMLE
                     AGDSALDVVTEAVRLLEACPLFNAGIGAVYTRDGTHELDACVMDGNTLKAGAVAGVSH
                     VRHPVLAARLVMERSPHVLMVGEGAENFAFSQGMARVSPDIFSTPARYEQLLAARAAG
                     EMALDHSGAPLDETKKMGTVGAVARDKFGNLAAATSTGGMTNKLPGRVGDSPLVGAGC
                     YANNASVAVSCTGTGEVFIRTLAAYDIAALMEYGGLSLADACERVVMEKLPALGGSGG
                     LIAVDHEGNVALPFNSEGMYRAWGYAGDTPTTGIYRE"
     gene            983..2854
                     /gene="gsiA"
                     /locus_tag="OQP62_000964"
     CDS             983..2854
                     /gene="gsiA"
                     /locus_tag="OQP62_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter ATP-binding protein
                     GsiA"
                     /protein_id="HCS1720578.1"
                     /translation="MPHSDELDSRDVLSVSGLNIAFHHEGQQVDAVRNVSLRLKRGET
                     LTIVGESGSGKSVTALALMRLIEQSGANVRCGEMLLRRRNRQVIELSEQSDAQMRRVR
                     GADIAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASHEEALAEAKRMLDQVRIPESQA
                     ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQQEM
                     SMGVIFITHDMGVVADIADRVLVMYQGEAVETGSVEQIFHAPTHPYTQTLLAAVPQLG
                     AMRGHSLPRRFPLISADEPALYESQIEQDTVVEGEPILQVRGLVTRFPLRSGLFNRVT
                     REVHAVENISFDLWPGETLSLVGESGSGKSTTGRALLRLVESRQGEIIFNGQRIDTLS
                     AGKLQPLRRDIQCIFQDPYASLDPRQTVGYSIMEPLRIHGLGQGDAAAKRVAWLLERV
                     GLRPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSVRGQIINLLLD
                     LQREMGIAYLFISHDMAVVERISHRVAVMYLGQIVEMGPRRAVFENPQHPYTRKLMAA
                     VPVADPSRHRPRRVLLSDDIPSNIHKRGEETPAVSLQLVGPGHYVARPLQDNALSRL"
     gene            2887..4425
                     /gene="gsiB"
                     /locus_tag="OQP62_000965"
     CDS             2887..4425
                     /gene="gsiB"
                     /locus_tag="OQP62_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter substrate-binding
                     protein GsiB"
                     /protein_id="HCS1720579.1"
                     /translation="MTQFITHKWLAALGLASSIAAFPALAAKDVVVAVGSNFTTLDPY
                     DANDTLSQAVAKSFYQGLFGLDKDMKVKNVLAEGYTVSDDGLTYTITLRQGVKFQDGA
                     DFNAAAVKANLDRASNPDNHLKRYNLYKNIAKTEVVDPATVKITLKQPFSAFINILAH
                     PATAMISPQALEKYGKDIGFHPVGTGPYQLETWNQTDFVKVKKFAGYWQQGLPKLDSI
                     TWRPVTDNNTRAAMLQTGEAQFAFPIPYEQAALLAKNKNLELVASPSIMQRYISMNVT
                     QKPFDNPKVREALNYAINRQALVKVAFAGYATPATGVVPPSIAYAQSYQPWPYDPAKA
                     RELLKEAGYPDGFSTTLWSSHNHSTAQKVLQFTQQQLAQIGIKARITAMDAGQRAAEV
                     EGKGQKESGVRMFYTGWSASTGEADWALSPLFASQNWPPTQFNTAFYSNKQVDSDLAA
                     ALKTNDPQEKTRLYKEAQDIIWKESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFDD
                     ADLK"
     gene            4486..5406
                     /gene="gsiC"
                     /locus_tag="OQP62_000966"
     CDS             4486..5406
                     /gene="gsiC"
                     /locus_tag="OQP62_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter permease GsiC"
                     /protein_id="HCS1720580.1"
                     /translation="MLNYVLKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEAD
                     AQVIALVRQQLGLDQPLHVQFWHYITHVLQGDFGTSMVSRRPVSEEIASRFLPTLWLT
                     ITSMIWAVLFGMAIGIAAAVWRNRWPDRVGMTLAVTGISFPAFALGMLLMQIFSVDLG
                     WLPTVGADSWQHYILPSLTLGAAVASVMARFTRSSFVDVLSEDYMRTARAKGVSETWV
                     VLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVDMRDYPVIQA
                     EVLLFSLEFILINLVVDVLYAAINPAIRYK"
     gene            5409..6320
                     /gene="gsiD"
                     /locus_tag="OQP62_000967"
     CDS             5409..6320
                     /gene="gsiD"
                     /locus_tag="OQP62_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter permease GsiD"
                     /protein_id="HCS1720581.1"
                     /translation="MRLFNWRRQAILHAMPVVKPDQIRTPWREFWRRFRRQHVALVAG
                     GFVLALILVAIFARWLTPYDAENYFDYDSLNNGPSLQHWFGVDSLGRDIFSRVLVGAQ
                     ISLAAGVFAVFIGAIIGTVLGLLAGYYEGWWDRFIMRICDVLFAFPGILLAIAVVAVL
                     GSGIANVIVAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDTTILFSHILPGT
                     VSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVALFPA
                     VAIFLTVLAFNLLGDGLRDALDPKIKG"
     gene            complement(6411..7736)
                     /gene="rimO"
                     /locus_tag="OQP62_000968"
     CDS             complement(6411..7736)
                     /gene="rimO"
                     /locus_tag="OQP62_000968"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HCS1720582.1"
                     /translation="MSNVTHQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPHYDD
                     ADMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITG
                     PHSYEQVLQHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIP
                     SMRGDLVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPMKTS
                     MVSLCEQLSKLGVWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMK
                     RPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCF
                     KYSPVEGAGANELPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDE
                     EGAIGRSMADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV"
     gene            7967..8350
                     /gene="bssR"
                     /locus_tag="OQP62_000969"
     CDS             7967..8350
                     /gene="bssR"
                     /locus_tag="OQP62_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator BssR"
                     /protein_id="HCS1720583.1"
                     /translation="MVVDRLRTDLLNKLINARIDLAAYLQLRKAKGYMSVSESDTLRD
                     NFFELNRELHDHALRQGLHLDQEEWNALRRAEGALAAAAVCLMSGHHDCPTFIAVNAD
                     KLENCLTTLTLSIQSLKAHSPLTQV"
     gene            8469..9590
                     /locus_tag="OQP62_000970"
     CDS             8469..9590
                     /locus_tag="OQP62_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001252732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HCS1720584.1"
                     /translation="MRRILLAIVSFSLFSSWANANLAPVNVEVLQTRLDHPWSLAFLP
                     DNRGMLITLKGGQLRHWQTGRGLSDPLAGVPKVWANGQGGLLDVVLAPDFAQSRRVWL
                     SYAEADREGNAGTAAGFGRLSDDFQRLEHFRTVFRQMPKLSTGNHFGGRMVFDAQGFL
                     FIALGENNQRATAQDLDKLQGKLVRLTGQGEIPPDNPFVHQAGARPEIWSYGIRNPQG
                     LAINPWSGALWLHEHGPRGGDEINIPEKGKNYGWPLATWGVNYSGLKVPEAKGEIVEG
                     TEQPVYYWKDSPAISGMAFYASDVFAPWRHKLFIGALKDKEVIVMRVDGNTVTEEGRI
                     LGDRKQRIRDVRVGPDGYLYVLTDESDGQLLKVSPAATR"
     gene            complement(9587..10213)
                     /locus_tag="OQP62_000971"
     CDS             complement(9587..10213)
                     /locus_tag="OQP62_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HCS1720585.1"
                     /translation="MITLWGRNNSTNVKKVLWTLEELELPYDQILAGGKFGVNQDADY
                     LAMNPNGLVPLLKDDETDLLLWESNAIVRYLAAQYGQNRLWVDNPARRAEGEKWMDWA
                     NQTLSPAHRVILMGLVRTPPEKRDQAAIEAGIEKCDSLFALLDDALAHQPWFSGDNFG
                     TGDIAIAPFVYNLLNVGLKWTPRPNLQRWYQQLTERPAFRKVVMIPVT"
     gene            10457..11659
                     /gene="dacC"
                     /locus_tag="OQP62_000972"
     CDS             10457..11659
                     /gene="dacC"
                     /locus_tag="OQP62_000972"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HCS1720586.1"
                     /translation="MTQYASSLRSLAAGSVLLFLFASPVKAEEQTIAPPGVDARAWIL
                     MDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGN
                     PALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAK
                     RLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQP
                     NRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEK
                     LLTWGFRFFETVTPIKPDATFVTQRVWFGDKREVNLGAGDAGSVTIPRGQLKNLKASF
                     TLNEPQLTAPLKKGQVVGTIDFQLNGKSIEQRPLMVMENVEEGGFFSRMWDFVLMKLH
                     QWFGSWFS"
     gene            complement(11705..12463)
                     /gene="deoR"
                     /locus_tag="OQP62_000973"
     CDS             complement(11705..12463)
                     /gene="deoR"
                     /locus_tag="OQP62_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor DeoR"
                     /protein_id="HCS1720587.1"
                     /translation="METRRDERIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLNH
                     KSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKRRAAQLAAGLVQAHQTVFIDCGT
                     TTPWIIEAIDNDLPFTAVCYSLNTFLALQDKPHCRAILSGGEFHASNAIFKPLDFHET
                     LNNICPDIAFYSAAGVHTSKGATCFNLEELPVKHWAMTMAQSHVLVVDHSKFGKVRPA
                     RMGELSRFDTIISDRRPDEAFVAYAKAQQITLMY"
     gene            complement(12535..13143)
                     /gene="ybjG"
                     /locus_tag="OQP62_000974"
     CDS             complement(12535..13143)
                     /gene="ybjG"
                     /locus_tag="OQP62_000974"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HCS1720588.1"
                     /translation="MLENLNNSLFYFINATPDSAQWIISLAIFIAKDVINIVPLLAVV
                     LWLWGPRDRVCAQRQLIVKIGIALIISLAVSWTMGHLFPHDRPFVDHIGYNFLHHAAD
                     DSFPSDHGTVIFTFALAFLFWHRLWSGIVMMAIAMTIAWSRVYLGVHWPLDMIGALLV
                     AMLGCLSAQLIWQWYGAPLYQALQRCYRFCFALPIRKGWVRD"
     gene            13456..14688
                     /locus_tag="OQP62_000975"
     CDS             13456..14688
                     /locus_tag="OQP62_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1720589.1"
                     /translation="MQNRLQSGGRLGRQALLFPLCLVLYEFSTYIGNDMIQPGMLAVV
                     EQYQAGLDWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVVWFIVTCLATLLA
                     KNIEQFTFLRFLQGISLCFIGAVGYAAIQESFEEAVCIKITALMANVALIAPLLGPLV
                     GAAWVHVLPWEGMFILFAALAAIAFFGLQRAMPETATRRGETLSFKALGRDYRLVIKN
                     RRFVAGALALGFVSLPLLAWIAQSPIIIISGEQLSSYEYGLLQVPVFGALIAGNLVLA
                     RLTSRRTVRSLIVMGGWPIVAGLIIAAAATVVSSHAYLWMTAGLSVYAFGIGLANAGL
                     VRLTLFSSDMSKGTVSAAMGMLQMLIFTVGIEVSKHAWLSGGNGLFSLFNLANGILWL
                     LLMLVFLKDKRTGNLQTV"
     gene            complement(14742..15557)
                     /locus_tag="OQP62_000976"
     CDS             complement(14742..15557)
                     /locus_tag="OQP62_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HCS1720590.1"
                     /translation="MSIKLIAVDMDGTFLSDQKTYNRDRFMAQYQQMKRQGIRFVVAS
                     GNQYYQLISFFPEIAHEIAFVAENGGWVVSEGEDVFNGELAKADFQAVVEHLLTRADV
                     EIIACGKNSAYTLKRYDDALKAVAAMYYHRLEFVDNFNNISDVFFKFGLNITDERIPE
                     VQAALHDAIGDIMVPVHTGYGSIDLIIPGVHKANGLRLLQQRWGIHDSEVVVFGDGGN
                     DIEMLRQAGFSFAMSHASEAVAAAAKYRAGSNNQEGVLDIIDSVLNNEPPFNV"
     gene            complement(15554..16765)
                     /locus_tag="OQP62_000977"
     CDS             complement(15554..16765)
                     /locus_tag="OQP62_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1720591.1"
                     /translation="MTVLSSRNALKRRTWALFMFFFLPGLLMASWATRTPAIRDILSV
                     STAEMGTVLFGLSIGSMSGILCSAWLVKRFGTRKVIHTTMTCAVTGMVILSVALWCAS
                     PLIFALGLAVFGASFGAAEVAINVEGAAVERELNKTVLPMMHGFYSFGTLAGAGVGMA
                     LTALSVPANIHIILAAAVAIAPIFIAIRAIPDGTGKNASEGSHLQEKGLPFYRDIQLL
                     LIGVVVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTVGRFTGGWFID
                     RYSRVTVVRASALMGALGIGLIIFVDSDWVAGVSVILWGLGASLGFPLTISAASDTGP
                     DAPTRVSVVATTGYLAFLVGPPLLGYLGEHYGLRSAMMVVLALVILAALVAKAVAKPV
                     STPQPVMEHNA"
     gene            16933..17553
                     /locus_tag="OQP62_000978"
     CDS             16933..17553
                     /locus_tag="OQP62_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HCS1720592.1"
                     /translation="MKENAVRRANDPKRREKIIQATLEAVKTYGVHAVTHRKIAAIAQ
                     VPLGSMTYYFAGMDALLSEAFTLFTENMSRQYQDFFAQVTDVEGACQAITEMIYGSQV
                     TTPDNMALMYQLYAYASDKPALKIVMQNWMQRSQNTLAQWFDAQTARALDAFIEGMTL
                     HFVTDRTPLAREAILQMVKRIAGESMSCHSASGNKKPTNLEPKWRG"
     gene            complement(17670..19355)
                     /locus_tag="OQP62_000979"
     CDS             complement(17670..19355)
                     /locus_tag="OQP62_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate:alanine antiporter"
                     /protein_id="HCS1720593.1"
                     /translation="MNINVADLLNGNYILLLFVVLALGLCLGKLRLGSVQLGNSIGVL
                     VVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGS
                     ALLIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGIASTQLSSALDNLS
                     LGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAY
                     RVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYP
                     DAHARLDPSFRNGKEVFDRDLLDMRIVTEEIVVKNHNAVGRRLAQLKLTDHGCFLNRV
                     IRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFII
                     GLMIGMITFQFRNFSFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLM
                     VFMAGVGLSAGSGISNGLGAVGGQMLIAGLVVSLIPVVICFLFGAYVLRMNRALLFGA
                     MMGARTCAPAMEIISDTARSNIPALGYAGTYAIANVLLTLAGTLIVIIWPGLG"
     gene            19626..20003
                     /locus_tag="OQP62_000980"
     CDS             19626..20003
                     /locus_tag="OQP62_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YbjM"
                     /protein_id="HCS1720594.1"
                     /translation="MKHKHGWASVVCCFVLFIVVCLSLTMHVQGAFRAAGHPEIGLLF
                     FTLLGAVASFCSHRREVIRPLIGAMLAAPFCLVLMRVVFMPTRSFWQELAWLFSAVFW
                     CALGALCYLFISSLFSHRRKKRR"
     gene            complement(20035..20298)
                     /locus_tag="OQP62_000981"
     CDS             complement(20035..20298)
                     /locus_tag="OQP62_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GrxA family glutaredoxin"
                     /protein_id="HCS1720595.1"
                     /translation="MFTVIFGRPGCPYCVRAKELAEKLSKERDDFNYRYIDIHAEGIT
                     KADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAWAKENLNLFA"
     gene            20468..20758
                     /locus_tag="OQP62_000982"
     CDS             20468..20758
                     /locus_tag="OQP62_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjC family protein"
                     /protein_id="HCS1720596.1"
                     /translation="MRTIGVLPKSVLILECLGMILLALALLSLNHYLTLPAPFNTSLA
                     GVLMVFLGVVLILPAAVAMMWRIAQLLAPQLMKRPPDISSRSDREKHNESDH"
     gene            20742..21464
                     /gene="nfsA"
                     /locus_tag="OQP62_000983"
     CDS             20742..21464
                     /gene="nfsA"
                     /locus_tag="OQP62_000983"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase NfsA"
                     /protein_id="HCS1720597.1"
                     /translation="MSPTIELLCGHRSIRHFTDEPVTDAQREAIIAAARSTSSSSFLQ
                     CSSIIRITDRALREALVPLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLL
                     LGVVDTAMMGQNALTAAESLGLGGVYISGIRNNIESVTELLKLPKHVLPLFGLCLGWP
                     ADNPDLKPRLPAELVVHENQYQPLDEKLLARYDEQLAEYYLTRGSNTRRDTWSDHIRR
                     TLIKENRPFILEYLHKQGWATR"
     gene            21522..22424
                     /gene="rimK"
                     /locus_tag="OQP62_000984"
     CDS             21522..22424
                     /gene="rimK"
                     /locus_tag="OQP62_000984"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6--L-glutamate ligase"
                     /protein_id="HCS1720598.1"
                     /translation="MKIAILSRDGTLYSCKRLREAAMRRGHLVEILDPLSCYMNINPA
                     ASSIHYKGRRLPHFDAVIPRIGSAITFYGTAALRQFELLGSYPLNESVAITRARDKLR
                     SLQLLARQGIDLPITGIAHSPDDTSDLIKMVGGAPLVVKLVEGTQGIGVVLAETRQAA
                     ESVIDAFRGLNAHILVQEYIAEAKGCDIRCLVVGNEVVAAIERCAKAGDFRSNLHRGG
                     VASIATITPRERDIAIKAAQTLGLDVAGVDILRAARGPLVMEVNASPGLEGIEKTTGV
                     DIAGRMIQWIERHATPEFCLKIGG"
     gene            22521..22997
                     /locus_tag="OQP62_000985"
     CDS             22521..22997
                     /locus_tag="OQP62_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HCS1720599.1"
                     /translation="MISLVVPTLDTLRQWLDDLGMNFFECDTCQALHLPHMQNFDGVY
                     DAKINLVDNTVLFSAMAEVRPSALLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVC
                     QSLSVMQGVTYEQFEWFVRQSEEQISMVILEAGAHQLLFNAEEDAQKTSAVDHFLH"
     gene            23346..24458
                     /gene="potF"
                     /locus_tag="OQP62_000986"
     CDS             23346..24458
                     /gene="potF"
                     /locus_tag="OQP62_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein PotF"
                     /protein_id="HCS1720600.1"
                     /translation="MTALKKKWLSGLVAGALMVVSVGTLAAEQKTLHIYNWSDYIAPD
                     TVANFEKETGINVIYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLD
                     KSKLPGWKNLDPELLKLVAKHDPDNKYAMPYMWATTGIGYNVDKVKAVLGDDAPVNSW
                     DLVLKPENLEKLKSCGVSFLDAPEEIFATVLNYLGKDPNSSKADDYTGPATDLLLKLR
                     PNIRYFHSSQYINDLANGDTCVAIGWAGDVWQAANRAKEAKNGVNISFSIPKEGVMAF
                     FDVFAMPADAKNKDEAYQFLNYLLRLDVIAHISDHVFYANANKEATALVSQQVRDNPG
                     IYPPADVRAKLFTLKVQEPKIDRVRTRAWTKVKSGK"
     gene            24546..25679
                     /gene="potG"
                     /locus_tag="OQP62_000987"
     CDS             24546..25679
                     /gene="potG"
                     /locus_tag="OQP62_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000996010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter ATP-binding subunit
                     PotG"
                     /protein_id="HCS1720601.1"
                     /translation="MNDAPHRPQVKTRKALTPLLEIRNLTKSFDGQHAVDDVSLTIYK
                     GEIFALLGASGCGKSTLLRMLAGFEPPSSGQIMLDGVDLAHVPPYQRPINMMFQSYAL
                     FPHMTVEQNIAFGLKQDKLPKAEITSRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVAL
                     ARSLAKRLKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAG
                     RIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGLLKAREEDGLVIDAPGLV
                     HPLKVDADASVVDNVPVYVALRPEKIMLCESPPADGYNFAVGEVAHIAYLGDLSIYHV
                     RLKSGQMISAQLQNAHRYRKGLPTWGDEVRLCWEADSCVVLTV"
     gene            25689..26642
                     /gene="potH"
                     /locus_tag="OQP62_000988"
     CDS             25689..26642
                     /gene="potH"
                     /locus_tag="OQP62_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter permease PotH"
                     /protein_id="HCS1720602.1"
                     /translation="MSTLEPPARISKPGGAALWLARMQMKHGRKLVIALPYIWLILLF
                     LLPFLIVFKISLAEMARAIPPYTDLLEWADGQLSITLNLGNFLQLTDDPLYFEACLQS
                     LQIAGISTICCLLLGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKN
                     NGVLNNVLLWLGVIDQPLTILHTNLAVYIGIVYAYLLFMVLPIYTALTRIDYSLVEAS
                     LDLGARPMKTFFSIIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQ
                     EFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQKSVGEHG"
     gene            26639..27484
                     /gene="potI"
                     /locus_tag="OQP62_000989"
     CDS             26639..27484
                     /gene="potI"
                     /locus_tag="OQP62_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter permease PotI"
                     /protein_id="HCS1720603.1"
                     /translation="MNNLPVVRSPWRILILVLGFTFLYAPMLMLVIYSFNSSKLVTVW
                     AGWSTRWYGELFRDTAMMSAVGLSLTIAACAATMAVVLGTIAAVVMVRFGRFRGANGF
                     AFMITAPLVMPDVITGLSLLLLFVALGHTIGWPSDRGMLTIWLAHVTFCTAYVAVVIA
                     SRLRELDRSIEEAAMDLGAAPLKVFFVITLPMIMPAVISGWLLAFTLSLDDLVIASFV
                     SGPGATTLPMLVFSSVRMGVNPEINALATLILGVVGIIGFIAWYLMARAEKQRIRDIQ
                     RARRG"
     gene            27558..28031
                     /locus_tag="OQP62_000990"
     CDS             27558..28031
                     /locus_tag="OQP62_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjO family protein"
                     /protein_id="HCS1720604.1"
                     /translation="MGFIKQSTSSHARLNVPTLVQVAAMAIILIRGLDVLMIMNTLGI
                     RGMGEFIHRSVQTWSLTLVFLASLVLVFIEIYCAFSLVKGRSWARWVYLAAQIIVSGY
                     LWAASLGYGYPELFSIAGESKRDILHSLVMQKLPDLLILFLLFIPAPSRRFFRLQ"
     gene            28074..29179
                     /gene="rlmC"
                     /locus_tag="OQP62_000991"
                     /pseudo
     CDS             28074..29179
                     /gene="rlmC"
                     /locus_tag="OQP62_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459859.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(747)-C(5))-methyltransferase
                     RlmC"
BASE COUNT         6510 a         7387 c         8264 g         7018 t
ORIGIN      
        1 gttgtgtgcc accgttaatg gaccctaaaa atgaataaag cagtgattgc gattcacggc
       61 ggcgcaggcg cgattgctcg cgcgcaaatg agccatgagc aggagctacg ctatatccag
      121 gcgctgtcag agattgtcga aagcgggcaa aagatgctgg aagcgggtga cagcgcgctt
      181 gatgtagtga cggaagcggt gcgcctgctg gaagcgtgtc cgctcttcaa tgcgggtatc
      241 ggcgcggtct atacccgaga cggaactcat gaactggatg cctgcgtgat ggacggcaat
      301 accctgaaag ccggagccgt cgcgggcgtg agtcatgttc gccatcctgt gctcgccgcc
      361 agactggtga tggagcgcag cccgcatgta ctcatggtgg gggaaggggc ggaaaacttt
      421 gccttttcac aggggatggc gcgcgtttcg ccggatatct tttccacccc ggcgcgttac
      481 gagcaattgc tggcggcgcg tgcggcgggc gaaatggcgc tcgatcacag cggcgcgccg
      541 ctggacgaaa cgaaaaaaat gggtacagtc ggcgcggtgg cgcgggataa attcggcaat
      601 ctggcggcgg caacgtctac cggcgggatg accaataaat tgcccgggcg cgtcggcgac
      661 agcccgctgg tcggcgccgg gtgttatgcc aacaacgcca gcgtcgccgt ttcctgtacc
      721 ggaacgggag aggtctttat tcgcacgctc gcggcttacg atatcgccgc attgatggaa
      781 tatggcggac tcagccttgc cgacgcctgt gagcgcgtgg tgatggaaaa attaccggcg
      841 ctgggcggca gcggtggatt aatcgccgtt gatcacgaag gtaatgtcgc gttgccgttt
      901 aacagcgaag ggatgtatcg cgcctgggga tatgccgggg atacgcctac cacaggaatt
      961 taccgggaat aaggagccgc aggtgccgca cagcgatgaa ctggatagcc gcgatgttct
     1021 gtccgtcagt ggcctgaata tcgcgtttca ccacgaaggg caacaggtag acgccgtgcg
     1081 taatgtgtca ttacgcctga agcgtggaga gactctgacg attgtcggcg agtcgggctc
     1141 gggaaaatcg gtgacggcgc tggcgttaat gcggctgatt gagcagtcgg gcgcgaacgt
     1201 gcgctgcggc gaaatgctgt tgcgtcggcg taatcgccag gtgattgagc tgtctgagca
     1261 gagtgacgcg cagatgcggc gtgtgcgcgg cgcggatatc gccatgattt tccaggagcc
     1321 aatgacctcg ctcaacccgg tatttaccgt tggcgagcaa attgccgaat ctattcgttt
     1381 gcatcagggg gccagccacg aagaggcgct ggcggaagcg aaacgtatgc tcgatcaggt
     1441 acggatcccg gagtcgcagg cgattttatc gcgttatccg catcagcttt ccggcgggat
     1501 gcgccagcga gtcatgattg cgatggcgct atcctgccgt ccggcggtat tgattgccga
     1561 tgaacccacc acggcgctgg atgtcactat ccaggcgcaa attctgcaac ttatcaaagt
     1621 gttgcagcaa gagatgtcga tgggcgtgat ttttatcact cacgacatgg gcgtcgtggc
     1681 ggatattgcc gatcgcgtgc tggtgatgta tcagggcgag gccgtggaaa ccggcagcgt
     1741 agagcagatt ttccatgcgc cgacgcatcc ttatacccaa acgttactgg ccgccgtccc
     1801 tcagcttggc gcgatgcgag gccactcgct gccacgccgt ttcccgttga tttccgctga
     1861 cgaaccggcc ctttatgaat cgcagattga gcaagacacg gtggtggaag gcgaacctat
     1921 tctccaggtt cgggggctgg tgacgcgatt cccgctgcgt agcggtctct ttaaccgcgt
     1981 tacgcgtgaa gttcatgccg ttgagaatat cagtttcgat ctctggcccg gcgaaacgct
     2041 atcgctggtg ggcgagtccg gtagcggaaa atcgacgacc ggacgcgcgc tgctgcggtt
     2101 ggttgaatcc cggcaggggg agattatctt taacggccag cgcattgaca cgctgtctgc
     2161 gggtaaactc cagccgttgc gccgcgatat tcagtgtatt ttccaggacc cttacgcctc
     2221 gctcgacccg cgccagaccg tggggtattc cattatggaa cctttacgga ttcatggtct
     2281 ggggcagggg gacgctgcgg caaagcgcgt ggcctggttg cttgagcgtg tcggattacg
     2341 tcctgaacat gcctggcgtt atccgcacga gttttccggc ggtcaacgtc agcgcatctg
     2401 cattgctcgc gcgctggcat tgaatcctaa agtgattatt gctgatgagg cggtctccgc
     2461 gctggatgtt tccgttcgcg gacagatcat taatttactg ctcgatttac aacgggaaat
     2521 ggggatcgcc tacctgttta tttcgcatga tatggcggtc gtggagcgaa ttagccatcg
     2581 cgtggcggtg atgtatcttg gtcaaattgt tgagatgggg ccgcggcgcg ccgtttttga
     2641 aaatccgcag catccttata cgcgtaaatt gatggcggcg gtgccggttg ccgatccctc
     2701 cagacaccgg ccgcggcgcg ttctgctatc agatgatata cccagcaata ttcataaacg
     2761 tggcgaagag acgcccgccg tttcattaca gttggtcggg ccgggacatt atgttgcgcg
     2821 gccgctgcag gataatgcgc tctcgcgctt ataacattca gacaggcagg gtttcaggag
     2881 aacaacatga cgcaatttat tacgcataaa tggctggcgg cgctgggact ggcctcatcc
     2941 attgcggctt ttccggccct ggcggccaaa gatgtggtgg tggcggtagg gtctaatttc
     3001 accacgctcg atccgtatga cgccaacgat acgctctcgc aggcggtggc gaagtcattt
     3061 tatcaaggtc tgtttggcct ggataaagac atgaaggtaa aaaacgtcct ggcggaaggc
     3121 tataccgttt ctgatgacgg tctgacctac accattaccc tacggcaggg ggtgaaattt
     3181 caggacggcg cggattttaa tgcggcggcg gtaaaagcga atctcgatcg cgccagcaat
     3241 ccggataacc acctcaagcg ttataacctg tataaaaata tcgcaaaaac ggaggtcgtc
     3301 gatccggcaa cggtaaaaat taccctgaaa cagccgttct ccgctttcat taatattctg
     3361 gcgcacccgg cgacggcgat gatctcgccg caagcgctgg aaaaatatgg caaggatatt
     3421 ggttttcatc cggtcggcac tggtccatat cagcttgaaa cctggaatca gaccgacttt
     3481 gtcaaagtga aaaagttcgc cggttactgg cagcagggct tacccaagct ggattctatt
     3541 acctggcgtc cggttactga caacaatacc cgcgcggcga tgctgcaaac cggcgaagcg
     3601 caatttgctt ttcctatccc ttatgagcag gccgcgttac tggcgaaaaa taaaaacctc
     3661 gaactggtcg ccagcccgtc cattatgcag cgttatatca gtatgaatgt gacgcagaag
     3721 ccgtttgata atcctaaggt gcgtgaggcg ttgaattacg ctatcaatcg tcaggcgctg
     3781 gttaaagtgg cgtttgccgg atacgccacg ccggcgacgg gcgtggtgcc gccgtcgata
     3841 gcctatgcgc aaagctatca gccgtggccc tatgatccgg ctaaagcgcg cgaactattg
     3901 aaagaggcgg ggtatccaga cggtttcagt accacgctgt ggtcatcgca caaccatagc
     3961 accgcgcaaa aagtgttgca gtttacccaa cagcaactgg cgcagattgg cattaaagcc
     4021 cggataaccg cgatggacgc cggccagcgc gccgcggaag ttgagggcaa agggcaaaaa
     4081 gagagcggcg tgcgaatgtt ctataccggc tggtcggcgt cgacgggcga agctgactgg
     4141 gcgttatcgc cgctcttcgc atcacaaaac tggccgccga cgcagtttaa taccgctttt
     4201 tacagcaaca agcaggtcga cagcgatttg gcggcggcct taaagactaa cgatccgcag
     4261 gagaaaacac gattatacaa agaggcgcag gatattatct ggaaagagtc gccctggata
     4321 ccgttggtgg tggagaaatt ggtttctgcg cacagtaaaa atttgaccgg tttctggatt
     4381 atgccggata ccggtttcag ctttgacgat gcggatttga agtaagtaat gcgatggggc
     4441 tggatggcgc gcgcgttgtc cgccatccgg taaaaggttc gtgtgatgct taactatgtt
     4501 ctcaagcgcc tgctgggatt aattcctacg ctgttgattg tggcagtgct ggtgttttta
     4561 tttgttcatt tgttgcccgg cgacccggcg cggctgatag ccggaccgga agccgacgcg
     4621 caggtgatag cgctggttcg tcagcagctg gggcttgatc agccgcttca tgtccagttt
     4681 tggcattaca tcacccatgt tttacaaggc gatttcggga cgtcaatggt ttcccgccgc
     4741 ccggtttctg aggagatcgc cagccgcttt ttgccgacgc tgtggctgac gataaccagt
     4801 atgatatggg cggtgttgtt tggcatggcg atcggcatcg ccgccgccgt gtggcgtaat
     4861 cgctggcctg accgggtagg aatgacgctt gccgtgaccg gcatttcttt cccggctttt
     4921 gcgctgggaa tgttgttaat gcagattttt tccgtggatc tgggctggct accgaccgtg
     4981 ggggcggata gctggcaaca ttatatttta ccctccctga cgcttggcgc ggcggtggca
     5041 tcagtcatgg cgcgttttac gcgctcctcg tttgtcgatg tgctgagcga ggattacatg
     5101 aggaccgcgc gggcgaaagg cgtcagtgaa acgtgggtgg tgttaaaaca tggcctgcgc
     5161 aatgcaatga tcccggtcgt caccatgatg ggactgcaat ttggctttct gcttggcgga
     5221 tcgatcgtcg tcgaaaaagt gtttaactgg ccggggcttg ggcgattact ggtcgactcc
     5281 gtcgacatgc gcgactaccc cgtgattcag gcagaagtgc tgctgttttc tctggaattt
     5341 attcttatca acttagtggt ggatgtcctc tatgccgcca ttaatccggc tatcaggtat
     5401 aagtaaggat gcgattattt aactggcgcc gtcaggcgat tttacatgct atgccggtgg
     5461 taaaacccga ccagatacgc acgccgtggc gggagttctg gcgtcgtttt cgccgccagc
     5521 atgtcgcgtt ggtcgccggg ggattcgtac tggcgttaat tctggtggcg atttttgccc
     5581 gttggctaac gccctacgat gcggaaaact attttgacta cgatagcctg aacaatggcc
     5641 cctctttgca gcattggttt ggcgttgact cgctgggaag agacatcttt agccgggttc
     5701 tcgttggcgc gcagatctca ctggcggcgg gcgtgttcgc ggtatttatc ggcgcgataa
     5761 tcggcacggt gttgggattg ctggcgggat attatgaagg ctggtgggat cgtttcatta
     5821 tgcgcatttg cgatgtgttg ttcgccttcc ccggcatttt gctggcgatt gccgttgtgg
     5881 cggtgttagg cagcggtatt gctaatgtga tcgttgcggt ggcgattttc tctattccgg
     5941 cgtttgctcg tctggtgcgc ggaaataccc tggtcttaaa acagcagacg tttattgagt
     6001 ctgcccgcag tatcggcgcc agcgacacga cgattttgtt tagccacatc ttgccgggaa
     6061 cggtctcgtc aattgtggtt ttctttacga tgcgtatcgg tacgtcaatt atttccgcgg
     6121 caagcctgtc atttctcggg ttaggcgcgc agccgccaac gccggagtgg ggagcgatgc
     6181 ttaatgaagc gcgggcggat atggtcatcg cgccgcacgt ggcgctcttc ccggcggtgg
     6241 cgattttcct gactgtgctg gcgtttaatc tgttaggcga cgggttgcgc gatgcgctgg
     6301 acccgaagat taaggggtaa gccagcccgg tggcgttgac gcctggcggg cctggaaccg
     6361 gctcgccagg tggggtaaca cattcggcac ccgcgccggg ggaagtggcg ttaaacccga
     6421 ctgccccaca aatcatattc gtcggcgttt tccactttca cgcgcacgat atcgcccggc
     6481 ttgacgttgg tttcgccgtt caaatagacc gcgccgtcaa tttccggcgc atccgccatg
     6541 ctacgcccga tagcgccttc ttcgtcaacc tcatcgacga tcaccagaat ttcgcggccc
     6601 actttttcct gcaagcgctc agcggagatt tgctgttgca gttgcataaa gcggttccag
     6661 cgctcttctt tcacctcttc cggcacctga tccggcagct cattcgcgcc tgcgccttcc
     6721 accgggctgt acttgaagca gcctacacga tcgaggcgcg cctctttcag gaagtcgagc
     6781 agcatctgga agtcttcttc cgtttcgccg gggaagccga caataaaggt ggagcgtagg
     6841 gtcagttccg ggcagatttc gcgccactgc ttaatgcgcg ccagctggcg gtcaacggaa
     6901 ccaggacgtt tcatcagttt aagaatccgc gggctggcat gttgcagcgg aatgtccaga
     6961 taaggcagga ttttgccttc cgccattagc ggaatcacat catcaacgtg tgggtagggg
     7021 tagacgtagt gcagacgtgt ccagacgccc agttttgata actgctcgca caggctcacc
     7081 atactggttt tcatcggttc gccattatgg aatccggtgc ggtgcttcac atctacgccg
     7141 taggcggagg tatcttgcga aatcaccaga atctctttga ccccggcatc aaccagacgt
     7201 ttcgcttcgc ttaatacgtc gccaatcgga cggctgacca gatccccgcg catcgacggg
     7261 atgatgcaga acgtgcagcg gtgattacag ccttcagaaa ttttcagata cgcataatgg
     7321 cgcggcgtca gttttacacc ctgttccggt acgaggctta aaaatggatt gtgcttcggc
     7381 ttcggtacgt aatgatgtac gtgctgcaga acttgctcat agctatgcgg cccggtgatt
     7441 tccagtactt tcggatgcac ttcgcggatc tgatcttctt ttgcgcccag gcagccggtg
     7501 acgattacct taccgttttc gttcagcgct tcgccaatgg cttccagtga ctcttgtacc
     7561 gcgctgtcaa taaagccaca ggtattaacg ataaccatat ccgcatcgtc atagtgtggc
     7621 acaacgtcat agccttcggt acgcagctca gtcaggattc gttccgaatc aacgaggttt
     7681 ttcggacagc ccagggaaac gaagccgatc tttggctggt gggttacatt actcatagct
     7741 taaaaagtgt tcatttattg gaatggtcag ggcagggatt ctacagatat ccgaacaaaa
     7801 attgtatcgc aatctcatca ggagcggcgg catcaaccgt tgtggttatc agcaaaaggt
     7861 gaaaaagggc aattctaaga aaattcttga tctctgacac ccctttgtct aaaaaacgac
     7921 catactatta agttgaaccc tggtagaaaa gaggaggaaa aaaggtatgg tcgttgacag
     7981 actgagaacc gatcttctca acaagctgat aaacgcgcgt atcgatcttg ccgcttatct
     8041 gcaattgcga aaagcgaagg ggtatatgtc agtcagcgaa agtgacactc tgcgtgacaa
     8101 tttttttgaa ctgaatcgcg agctccacga tcacgcttta cggcagggac tgcatctcga
     8161 tcaggaagag tggaacgcgc tgcgccgtgc cgaaggcgcg cttgcagccg ccgccgtttg
     8221 tttaatgagt ggacaccatg attgtccgac ctttattgcc gtcaacgcag ataaacttga
     8281 aaactgtctg acaactttga cgctgagtat tcagagtctg aaagcacatt caccgcttac
     8341 acaggtctga ataaggggga ggcgactccc cctttttacc ggaccgcgcc gcttaatgtt
     8401 ttgtaaaaat aaacccgacc tcttgcgatg ctgactacgc tttaacgcag agccctgaag
     8461 gaggcggtat gcgtcgaata cttctcgcga tagtttcatt ctctcttttc tcttcatggg
     8521 cgaacgccaa tcttgcgccg gtgaacgttg aggtgctgca aacccgactc gatcacccgt
     8581 ggtcgctggc ttttttgccg gataaccgtg ggatgctcat taccctgaaa gggggacaac
     8641 tgcgccactg gcagacgggg cggggacttt ccgatccgct ggctggcgta ccgaaagtgt
     8701 gggcaaacgg gcagggaggt ttgctggacg tcgtgctggc gcctgatttt gcccagtcgc
     8761 gccgcgtctg gctgagctat gctgaagctg accgcgaagg aaacgccggt acggcagccg
     8821 gctttggacg gctgagcgac gattttcagc gtctggagca ttttcgtacc gtgtttcgcc
     8881 agatgcctaa gctgtctacc ggcaaccatt tcggcggacg tatggtattc gatgcgcaag
     8941 ggtttctttt tattgccctg ggtgaaaata accagcgcgc taccgcgcag gatttggata
     9001 aattacaggg taagctggtg cgcctgaccg ggcagggcga aattccgccg gataatccgt
     9061 ttgtacatca ggcgggcgcg cgtccggaaa tctggtctta cggtattcgt aatccgcagg
     9121 ggctggccat caatccctgg agcggcgcgc tatggctgca tgaacacggt ccgcgcggcg
     9181 gcgatgaaat taacatcccg gaaaaaggca aaaattatgg ctggccgctg gccacatggg
     9241 gcgtcaacta tagtggtctg aaagtgccgg aagccaaagg tgaaattgtc gagggaacgg
     9301 agcaaccggt ttactactgg aaggattctc cggcgatcag cgggatggct ttttatgcca
     9361 gcgacgtttt tgcgccgtgg cggcacaaac tgtttatcgg cgcgctaaaa gataaagagg
     9421 tcattgtgat gcgcgtcgat ggcaatacgg tgacggaaga aggccgtatt ctgggtgaca
     9481 gaaagcagcg tattcgggat gtgcgtgtcg gacctgacgg ctacttatat gtgttaaccg
     9541 atgagtccga cgggcagtta ctcaaggtaa gtcctgcagc cacgcgttag gtcaccggga
     9601 tcatcaccac tttgcgaaaa gcagggcgct cggtaagctg ttgataccag cgttgcagat
     9661 tcgggcgcgg cgtccacttc agacccacgt tcagcaggtt atagacgaag ggcgcaatag
     9721 cgatatcgcc ggtgccaaag ttatcccctg agaaccacgg ctggtgggcc agcgcatcat
     9781 caagaagcgc aaacaggcta tcacactttt cgataccggc ttcaattgcc gcctggtcgc
     9841 gtttttccgg cggggttctg accagtccca tcaggatcac gcggtgcgcc gggcttaacg
     9901 tttgattcgc ccagtccatc catttttcgc cctccgcacg ccgtgccgga ttatcaaccc
     9961 atagccggtt ctggccgtat tgcgccgcca gatagcggac aatggcattg gattcccaca
    10021 ataacaggtc ggtttcatca tctttaagca gcggcaccag cccattagga ttcatcgcca
    10081 gatagtcggc atcctggtta acgccgaatt ttccacctgc cagaatttga tcgtatggca
    10141 gttccagctc ttcaagcgtc cacaacactt ttttaacatt agtcgagttg ttccggcccc
    10201 acagcgtaat catattaacc ccttctgttt tatcaggatg atgacagtaa tcggcctacc
    10261 gtgagataaa cctaacattt acacaatggt ctgtaaaaaa atcgttatga aggaagcgta
    10321 acgggatgtt attgcataaa ctttaaaaac tttaccaagt tacggtttct ttaacgtcgt
    10381 gagtgcgtta ttactcaccg cacttattac acggtggtgt gacgtgtgtt tttggaatgg
    10441 atactcgggt ggtactatga cgcaatacgc ttcttccctt cgtagcctcg cggcaggttc
    10501 ggttctctta ttccttttcg cttcgcctgt aaaggcagag gaacaaacga tcgcgccgcc
    10561 gggcgttgat gcgcgagcct ggatcttaat ggattacgcc agcggtaaag tactggcgga
    10621 aggcaacgcc gatgagaaac tcgaccctgc cagtttgaca aaaattatga ccagctacgt
    10681 ggtgggccag gcgctgaagg caggcaaaat caagctgacc gatatggtga cggtgggcaa
    10741 agatgcctgg gcgacgggga acccggcgct acgtgggtcg tcggtgatgt ttctgaagcc
    10801 cggcgatcag gtgtcggttg cggatcttaa taaaggcatc atcattcagt caggtaatga
    10861 tgcctgtatc gcgcttgccg actacgtcgc cggaagccag gagtccttta tcggcctgat
    10921 gaatgcctat gcgaaacgat tggggttaac caatacaacc ttccagacgg tacacggcct
    10981 tgatgcgcca gggcagttca gtaccgctcg cgatatggcg ctgctcggca aggccttgat
    11041 tcacgatgtg cctgacgaat acgccattca taaagagaaa gaatttactt ttaataatat
    11101 tcgtcagcca aaccgcaacc gcctgttgtg gagtaccaat ctgcatgtcg acggcatgaa
    11161 aacggggaca acggcaggcg ctggatataa ccttgtcgcc tccgccaccc agggcgatat
    11221 gcgcctgatc tctgtcgtgc tgggggcgaa aacggaccgt attcgtttta atgagtcaga
    11281 aaaactgctg acctggggtt tccgcttctt tgaaacggtc acgccgatta aacctgacgc
    11341 gacattcgtg acgcaacggg tctggtttgg cgataagcgt gaggtcaatt tgggagcggg
    11401 cgatgcgggg tctgtgacga ttccgcgtgg gcagcttaaa aacctgaagg ccagctttac
    11461 gttgaacgaa ccacagctca cggcgccatt gaagaaaggg caggttgtcg gcaccatcga
    11521 tttccagctt aacggaaaat ccattgagca acgcccgtta atggtgatgg aaaacgtcga
    11581 ggagggggga tttttcagcc gtatgtggga ttttgtgctg atgaaactcc atcagtggtt
    11641 tggcagttgg ttctcgtaaa ataaccccgt tgccgggtgc gcgtcgcatc cggcaaacct
    11701 gcggttaata catcagagta atttgttgcg ctttagcgta ggccacaaag gcctcatcgg
    11761 gacggcggtc gctgataatc gtatcaaagc gtgataattc ccccatccgc gccggacgta
    11821 ccttgccgaa tttactgtga tccaccacca gtacatggct ctgggccatt gtcatggccc
    11881 aatgttttac cggcagctct tccagattaa agcaggtagc gcctttactg gtatgaacgc
    11941 cggcggcgga ataaaacgcg atatccggac aaatattgtt taacgtttca tggaaatcaa
    12001 gcggtttgaa aatggcgttg ctggcgtgaa actccccgcc gctgaggatg gcgcggcaat
    12061 ggggtttgtc ctgcagcgcc agaaaggtat taagtgaata gcacaccgcc gtaaagggaa
    12121 gatcattatc aatagcttca atgatccacg gcgtggtggt gccgcagtca ataaataccg
    12181 tctgatgcgc ttgtaccaag cccgcagcca actgagcggc acggcgtttt tcttccacca
    12241 gacgagattt ttgatcgctt aacagataat gactggcgct gcggggctcc agtacgatat
    12301 agccgcccag caacacgaca ggcgcgcttt tatggttcag gtcgcgacga atggtcattt
    12361 cagagacgcc caacagggtc gcggcttctt taagatgaag tttatcgctg cgttttaagg
    12421 cctgcagcaa ttgaccaata cgctcgtcgc gtcgcgtttc catagttccc ctggagagtt
    12481 aaataagcgc tccgcaccat acagagcgct taatattact ctttttttcg ctatttagtc
    12541 acgtacccag ccttttcgaa tgggcaatgc gaaacagaaa cggtaacaac gttgcagcgc
    12601 ctggtagagc ggcgcgccgt accattgcca gatcagctgt gcgctcaggc agccaagcat
    12661 cgctaccagc agcgcgccaa tcatatctaa cggccagtgt acgccgagat agacgcgcga
    12721 ccaggcgatg gtcatggcta tcgccatcat cacgatgcct gaccagaggc ggtgccagaa
    12781 caaaaacgcc agcgcaaagg taaaaatcac cgtaccgtga tcgctgggga acgagtcatc
    12841 ggcggcatga tgcaggaagt tatagccgat atgatcgaca aacggacggt cgtgcgggaa
    12901 aaggtgtccc attgtccagg agaccgccag actgataatc agcgcgatgc cgattttaac
    12961 gatcagctgg cgctgggcgc agacccgatc gcggggcccc cacagccaga gtaccacggc
    13021 taagagcggg acgatgttga tgacatcttt ggcgataaag atagcgagcg aaattatcca
    13081 ctgcgcggaa tcaggcgtgg cgttaataaa ataaaacagc gagttgttaa ggttttccag
    13141 cataacatcc aggctcggag caatgaaatc aaaagggata gccagctcat ccccgtgcaa
    13201 actgagcata aatgcagcgt aacagggagg aaaagcagta ttgtcttatt tggcggcaac
    13261 atgaagagat ttaagacaat ggcataaaat aacgttgatg ataacggcgc aaacttaaat
    13321 taaccttaaa gtacgcaagc gctaagcagc tttctgtaaa aatgtgcgct atttcccttg
    13381 cagcctcata attcgctatc tcagttcccc gactttcatt acactctgcg cggtttttat
    13441 tggcgaagag atggtatgca gaatcgttta caatcaggcg gcaggctggg acgtcaggcg
    13501 ctgctttttc ctctctgtct ggtgctgtac gagttttcta cttatattgg caacgacatg
    13561 atccaaccgg gtatgctggc ggtggttgag cagtatcagg cgggcctgga ctgggttccg
    13621 acgtccatga ccgcttatct ggcgggcggt atgttcttac aatggctgct tggcccgttg
    13681 tctgaccgga ttggccgtcg tcccgtgatg ctggcgggcg tcgtgtggtt tattgtcacc
    13741 tgcctggcga cgttactggc gaaaaacatc gaacaattta cattcctgcg ttttttgcaa
    13801 gggattagcc tgtgttttat cggcgctgta gggtatgccg cgattcagga atcctttgag
    13861 gaggcggtgt gtataaaaat taccgcgctg atggcgaacg tggcgttaat cgcgccgcta
    13921 ctgggaccac tagttggggc ggcatgggtg catgttctgc cgtgggaggg gatgtttatt
    13981 ttatttgccg cactggccgc tatcgccttt ttcgggctac agcgcgcaat gccggagacc
    14041 gccacgcggc ggggcgaaac gctgtcattt aaggcgcttg gccgggatta tcggctggtg
    14101 ataaaaaatc ggcggttcgt cgcaggggcg ttagcgctgg gatttgtcag cctgccgctg
    14161 ttggcctgga ttgcgcagtc gccgattatc atcattagcg gcgaacagct cagcagctat
    14221 gaatatggtt tgctgcaggt gcccgttttt ggcgcgctca ttgccggtaa tctggtgttg
    14281 gcgcgtttaa cctcccgacg tacggttcgc tcgctgatcg tgatgggcgg ctggcctatc
    14341 gtcgcggggc tgatcatcgc cgcggcggcg acggtggttt catcccatgc ttatttatgg
    14401 atgacggcgg gattaagcgt atacgctttt ggcattgggc tggcgaatgc cggactggtg
    14461 cgtctgacgc tcttttccag cgatatgagt aaaggaacgg tctcggcggc gatgggaatg
    14521 ctacaaatgc tgatttttac cgttggcatt gaagtcagta aacacgcctg gttaagcggc
    14581 ggcaatgggc tatttagcct gtttaatctg gcaaacggta ttctttggct actgctgatg
    14641 ctggtcttct taaaagataa gcggacgggg aatttgcaaa cagtctgaga gagcggctac
    14701 gcctgataag ctttctgtta tcaggcgtag agaggcatcc gctagacgtt gaacggcggc
    14761 tcgttgttta atacgctgtc gatgatatcc agcacgcctt cctgattgtt cgatccggcg
    14821 cggtatttcg ccgccgccgc gaccgcttcg ctggcgtgcg acatggcaaa actaaacccg
    14881 gcctgacgca gcatctcaat atcgttgccg ccgtcgccga ataccaccac ttcactatca
    14941 tgaatgcccc agcgctgctg taacagacgc aggccgttgg ctttatgcac gccgggaatt
    15001 attaaatcaa tactgccata gccggtatga acggggacca tgatatcgcc aatggcgtcg
    15061 tgcagcgccg cctgtacttc cggtatccgt tcatcggtaa tattaaggcc gaatttgaaa
    15121 aaaacatcgc tgatattgtt gaaattatcc acaaactcca gacgatgata atacattgcc
    15181 gcaacggctt ttaacgcatc gtcgtaccgt ttcagcgtgt aggcgctgtt ttttccacag
    15241 gcgatgatct ccacatcggc gcgtgtgagc aggtgttcga caaccgcctg gaagtcggct
    15301 tttgccagct cgccgttaaa aacatcctct ccttcgctga ccacccagcc accgttttcc
    15361 gcgacaaaag cgatttcgtg cgcaatttcc ggaaagaagg agattaactg gtaatactgg
    15421 ttgccgctgg ccacgacaaa gcgaatgcct tgccgcttca tttgttggta ctgcgccata
    15481 aaccggtcac ggttataggt tttttgatcg ctcagaaaag tgccgtccat gtcgacggcg
    15541 attaatttaa tactcatgcg ttatgctcca tcaccggttg cggagtcgat acaggtttgg
    15601 cgacggcctt cgccaccagc gctgccagaa taaccagcgc cagcacaacc atcatggcgc
    15661 tgcgtaatcc atagtgctct cccagatagc ccaacagcgg cggcccgacc aaaaacgcca
    15721 gatagccggt cgtggcgaca acgctcacgc gcgtcggcgc gtcgggaccg gtatcgctgg
    15781 cggcggaaat ggtcagcggg aagccgagcg aagcgcctaa gccccaaaga atgaccgaga
    15841 cgccggcaac ccagtcgcta tcgacaaaaa taatcaggcc aatgcccaac gctcccatca
    15901 acgcgctggc gcgaacaacc gtcacccggc tatagcggtc aataaaccag ccgccggtaa
    15961 agcggccaac ggtcatacca agcgtgaaac cggcgtagat cagagagccg gaggttgggc
    16021 taaaaccgtg tccgtctacc atcagtagcg gtagccagtc attcgcagat ccttcggcga
    16081 atgccattgc cagcaccacc acgccaataa gcaaaagctg gatgtcccga taaaaaggta
    16141 atcctttttc ctgaaggtga gaaccttccg atgcgttttt acccgtaccg tcagggatcg
    16201 cccgaatggc gataaaaatg ggcgcgatcg ccacggcagc cgcgaggatg atatggatgt
    16261 tagccgggac gcttaatgcg gttaacgcca tgccgacacc agcgcccgcc agcgtgccga
    16321 aactgtagaa accatgcatc atcggcagaa cggttttatt cagctcgcgt tcgaccgccg
    16381 cgccttcgac attaatcgcc acttcggcgg cgccaaaact ggcgccgaaa acggctaatc
    16441 caagggcaaa aatcagcggc gaggcgcacc acagcgcgac gctaagaata accatcccgg
    16501 ttactgcgca ggtcatcgtc gtgtgaataa ccttccgggt gccaaatcgt ttcaccagcc
    16561 aggcggaaca aagaataccg ctcattgaac cgatagaaag cccgaataag accgtcccca
    16621 tttccgcggt agagacggaa agaatatccc gaatagcagg cgttcgggtt gcccaggagg
    16681 ccatcagcag tccgggtaaa aagaagaaca taaacagcgc ccaggtacgg cgttttaagg
    16741 cgttacgtga ggagaggacg gtcatagcgt caggccagaa aatagaagcg agaggtaaac
    16801 attagcaagc ttgtgtacat ttgtacatat cgtcgtcata cttcgttgtg cagacagttt
    16861 ttgctgtctg ttttttcagc gtaagcggca ggctactatc gcctgcatcc tgaatgagat
    16921 gtggaactca tcatgaaaga aaatgccgta agacgcgcca atgatcctaa gcgacgggaa
    16981 aaaataattc aggccacact ggaagcggta aagacctatg gcgttcatgc cgtgacgcac
    17041 cggaaaatcg ccgctatcgc tcaggtgccg cttggctcga tgacctacta ttttgccggt
    17101 atggatgcgt tattgagtga agcttttaca cttttcaccg agaacatgtc gcgtcaatac
    17161 caggattttt ttgcgcaggt gacggatgtg gagggggcgt gccaggcgat aacggaaatg
    17221 atttacggct cgcaggttac gacgccggat aatatggcgt taatgtatca gttatatgcc
    17281 tatgccagcg ataagccagc gttaaaaata gtcatgcaaa actggatgca gcgtagccag
    17341 aatacgctgg cgcagtggtt tgacgcacag accgcccgcg cgctggatgc gtttatcgag
    17401 gggatgacgc tgcattttgt gacggatcga acgccgttgg cgcgtgaagc gattttacag
    17461 atggtaaagc gaatagccgg agagtcaatg tcgtgtcact ctgcgtcggg caacaaaaaa
    17521 cccaccaacc ttgaaccgaa atggcggggt tgatgggctc cacaaaatgg ggacatcaaa
    17581 gaaaagcagt ggcaataggt atgactgatg ctttaacgaa aagttcgacc tattggcaaa
    17641 attttttcac ttaaaggcaa acttcagttt tatcctaatc ccggccagat gatgacaata
    17701 agcgtccccg ccagcgttag cagaacgttg gcgatggcgt aagtccccgc ataacccagc
    17761 gctggaatat tgctgcgcgc tgtatcgcta atgatttcca tcgccggggc gcaggtacgc
    17821 gcgcccatca tggcgccgaa cagcagcgcc cggttcatgc gcagcacata agcgccaaac
    17881 aagaagcaga tcaccaccgg tatcaggctg acgacaagcc cggcgatcag catttgtccg
    17941 ccgaccgcgc ccagaccgtt gctgataccg ctgccggcgc ttaaaccaac gcctgccata
    18001 aataccatca agccgaattc tttcaccatg ttaagcgcgc cctgcggaat ataaccaaag
    18061 gtaggatggt tagcgcgcag gaaaccgagc atgatcccgg cgaacagcaa tccggccgcg
    18121 ttgccgatgc cgaaactaaa atttctgaac tggaaggtaa tcatcccgat cattaacccg
    18181 atgataaaaa aagcgcagaa ggcgagcagg tccgtcacct gactatggat cgaaataaaa
    18241 ccaatgcgat cggcgatggt ttttacgcgt ctggcgtcgc cgctcacctg taacacgtcg
    18301 cctttattca gcacgacgtt atcgtcgata ggcatttcga tctggctgcg gatgacgcgg
    18361 ttaaggaagc agccatgatc ggtcagcttg agctgagcga ggcggcgacc gaccgcattg
    18421 tggtttttca ccacaatttc ctccgtcacg atgcgcatat caagcagatc gcgatcaaac
    18481 acttccttac cattacggaa gctgggatcg agcctggcgt gcgcgtccgg atagccgacc
    18541 agcgcaatct catcgcccat ttgcagcacc gcatcgccat ccgggttcgc cagaataccg
    18601 ttacgacgaa tacgttcgat atagcagcct gtctggcggt aaatacccag ctcgcgcagg
    18661 tttttaccgt cagtccaggc caccagttcc gggccaaccc gataggcgcg gataaccggc
    18721 aaataaacct tgcgattagc atcggtatcc agaccgcgct cgcgagcaat ttgctgggcg
    18781 ctggtttgca aatcctgatg ctgtagttta ggcaagtaac gcgcgcccac gatcagactg
    18841 accagcccaa tcagataggt cagggcatag cccaggctca gattatcaag agcggaggag
    18901 agttgggtgc tggcgatgcc ggaatgtcgc agggtatcgc ctgcgccaac cagcacgggc
    18961 gtggatgtca ttgagccggc cagcataccg gccgtcaggc cgatatccca gccgaatagc
    19021 ttaccaaggc ctaaggcgat tagcagagcg ctaccgacca tgaccagggc aagcatcaga
    19081 taatttttac cgtcgcgaaa aaaaatcgaa aaaaagttgg ggccagcctc gacgccgaca
    19141 caaaaaataa acagcataaa tcccagattt agcgcgtcgg tgttaatact aaagtgttgc
    19201 tgccctaata atagagagac cactaaaacg ccaatggaat taccaagttg gactgaaccc
    19261 agacgtaact tgccaagaca caggccaaga gccaggacca caaataataa caggatgtaa
    19321 ttcccattta acaaatctgc gacgtttata ttcacggaga ctaacttctt gtttacgagt
    19381 aagctgttga aagaaatggt aatttacgct actgttttta tcatgaatta agggtgcaat
    19441 cgtattgcat acagcatcca aataaaaaca acacaacaat atatcctgct agtttaatct
    19501 tattgcgtac taacggctat aagaattgtg caggtgtgtt tttggcatgg aatgccacat
    19561 gactttatct gactggatgc ctcacggcgg aaagcgtgtt cgatagagag tgtcaggagg
    19621 aacggttgaa acataaacac gggtgggcaa gcgttgtctg ctgctttgta ctctttattg
    19681 tggtgtgtct ttcattaact atgcatgtac aaggcgcttt tcgcgcggca gggcatcctg
    19741 agattggact gttatttttt acgttgcttg gtgcggtggc cagtttttgt tctcaccgac
    19801 gcgaggtgat ccgaccgctg atcggggcga tgctggcggc gccgttttgc ctggtgttaa
    19861 tgcgcgtggt atttatgcct acccgatcgt tttggcaaga actggcgtgg ttatttagcg
    19921 ccgtattctg gtgtgcgtta ggcgcgctct gctatttgtt tattagcagc ctgtttagcc
    19981 accggcgaaa aaaacgccga tagcgccctc cggcagaggg cgtcgccaga gcaatcaggc
    20041 gaaaagattc agattttctt ttgcccatgc ttcaaaatcc gtacagccgc cgatatgttt
    20101 ttgatcgaca aaaatctgcg gtacggtttc tacaggttta cctacggttt tttccaaatc
    20161 cgctttagta atgccttcgg catggatatc aatatagcgg tagttgaaat cgtcgcgttc
    20221 tttgctcagt ttttccgcca actcttttgc acgcacgcaa taagggcacc ctgggcggcc
    20281 aaaaataaca gtaaacatat ctctcctcga acataaagcc agacggcgaa caggtgttat
    20341 catgccgcga tttacggcag atgaaaagca ggttacgcct gttcctttga taactcaggg
    20401 ctatatctgt taagcacgcc ggaccagaac gttctacact gtgcgtcagt taaccgggag
    20461 gcttgatatg cgcacgatcg gcgtgttacc caaaagcgta ctgatactgg aatgcctcgg
    20521 tatgattttg ctggcgcttg ctctgctatc gcttaatcat taccttacgc tgcccgcgcc
    20581 gttcaatacg tcgctggctg gcgtattgat ggttttcctg ggcgtcgtgt tgatcctccc
    20641 cgccgcggtg gcgatgatgt ggcgtattgc gcagttactg gcgccgcagt tgatgaaacg
    20701 tccacccgac atttcttccc gttcagatag agaaaagcat aatgagtccg accattgaac
    20761 ttctttgtgg ccatcgttct attcgccatt tcaccgatga acccgtgact gacgcgcagc
    20821 gagaggccat tattgccgcc gcgcgcagca cgtccagttc cagtttttta cagtgcagct
    20881 ctataatccg tattaccgat cgggcgctgc gcgaggcgtt agtgcccctg acgggcgggc
    20941 aaaagcatgt ggcgcaggcc gctgagttct gggtattttg tgccgatttt aatcgtcatt
    21001 tgcagatctg tcctgacgcg cagttggggc ttgccgaaca actgctgctc ggtgtcgtcg
    21061 atacggcgat gatggggcaa aacgcgctga cggcggcgga atcactgggg ttaggcggcg
    21121 tgtatatcag cggcatccgt aataatattg aatctgttac cgaactatta aaattgccga
    21181 agcatgtatt gccgctcttt ggcctgtgtt tgggatggcc tgcggataat ccggatctga
    21241 aaccgcgcct gcctgccgag cttgtggttc atgagaacca gtatcaaccg cttgatgaaa
    21301 agctgctggc gcgctatgac gagcagttgg ctgagtatta tctgacccgc ggcagtaata
    21361 cgcgacgcga tacctggagc gatcatatcc gtcgcaccct gattaaagaa aatcgcccat
    21421 ttatccttga atatttgcat aaacagggct gggcgacgcg ctaaaacctg cgggccagtg
    21481 tatgatacgc gggcttttca gggttttcag cgaggtgcag ggtgaaaatt gccatattgt
    21541 ctagggatgg aacgctctat tcttgcaaac gtctgcgcga agcggcgatg cggcgcggcc
    21601 atctggtcga gatactcgat cctctttcct gctatatgaa tattaatccg gcagcgtcgt
    21661 cgatccatta caaggggcgt cgtctgcccc attttgacgc cgttattccc cgtattggtt
    21721 cggccattac cttttatggt accgctgcgc tacgtcagtt tgagctactg ggtagctatc
    21781 cgctgaatga atccgtcgct attacccgcg cgcgcgataa gctgcgatcg ctacaacttc
    21841 tggcgcgcca ggggatcgat ctccccatta ccgggatcgc ccattcgccg gatgatacca
    21901 gcgatcttat taagatggtt ggcggggcgc cgctggtcgt gaagctggta gaaggcacgc
    21961 aagggatcgg cgtggtattg gcggagacgc gtcaggctgc tgaaagcgtt attgatgcgt
    22021 ttcgggggct gaatgcccat atcctggttc aggaatacat tgccgaagct aaaggatgcg
    22081 atattcgttg tctggtcgtc ggcaatgagg ttgtggcggc gattgagcgg tgcgcgaaag
    22141 ccggtgattt tcgctccaat cttcatcgtg gcggggtggc cagcatcgcg acgatcacgc
    22201 cccgtgaacg ggatatcgcc atcaaagccg cacagacgct ggggctggat gtggcgggtg
    22261 tcgatatttt acgcgccgcg cgcgggccgc tggtgatgga ggtgaatgcc tcgccgggac
    22321 tggaaggtat cgaaaagact acgggcgtgg atatcgcggg gcgaatgatt cagtggatag
    22381 aacgtcacgc tacgcctgaa ttttgcctta aaatcggcgg ctaatcgcaa tcgtggattc
    22441 cgccgtagta cgaagcacgc tttttgcgta agctgtgccg gtaatttttt catcgtcatc
    22501 gtaagaggta gcacattatt atgatatcac tggtcgttcc cactctggat acgttgcgtc
    22561 aatggctcga cgacctgggc atgaatttct tcgaatgtga tacctgccag gcgctgcatt
    22621 tgccgcatat gcagaatttt gacggcgtct acgatgctaa aatcaatttg gtggacaaca
    22681 ccgttctttt ttccgcgatg gcggaggtca ggccttccgc gttgctgccg ctggcggccg
    22741 atctctctgc tatcaacgcc agttcgttga cggtaaaagc ctttctcgat atgcaggatg
    22801 ataatctgcc aaaactggtt gtgtgccagt ctttatccgt tatgcaaggc gtcacctacg
    22861 agcagttcga atggtttgtt cgccaaagtg aagagcagat ttctatggtg atccttgagg
    22921 ccggggcgca tcagcttctg tttaacgcgg aagaagacgc gcaaaaaacc agcgcggttg
    22981 accattttct tcactgatcc ctcccgataa tcaggcagtc gctgccagcg cggctgctgt
    23041 ttacgttttt ttatgctgct gttaaccttt atttaaagaa ttattcacct cctttctggc
    23101 catttcgctt tatcacatag acaaaacctg cataaaaaat tgataaaagg cgttttttaa
    23161 tctgggctat agcctcaaac cttagctaaa gttattcttg cgaagcttct atagcgagct
    23221 tgatggcagg gagggcgacc tctcttcttc atttgtatca aatgaaaagg tatgcacatt
    23281 tcaggcatgt tttaaaccac gcctaatggg ttcatttgtt aacggatttt agaaggaaag
    23341 cgatgatgac cgccttaaag aaaaaatggc tatcgggtct ggttgcgggt gctctgatgg
    23401 tcgtctctgt cggcacgctc gctgccgaac aaaaaacgct gcacatttat aactggtcag
    23461 attatatcgc gccggacacg gtggcgaact ttgaaaaaga gaccgggatt aacgttatct
    23521 atgatgtctt tgactctaac gaagtgctgg aaggcaagtt aatggcaggc agcaccgggt
    23581 tcgatctggt ggtgccatcg gccagttttc ttgagcgcca gctcaccgcg ggcgtttttc
    23641 agccgctgga taaaagcaaa cttcccggct ggaaaaacct cgatcctgaa ctgctgaaac
    23701 tggtagcgaa gcacgatcct gacaacaaat acgccatgcc ctatatgtgg gccacgacgg
    23761 gcattggcta taacgttgat aaagtgaaag cggtgctggg ggatgatgcg ccagtgaata
    23821 gctgggattt agtcctcaag ccggaaaatc tggagaagct aaaaagctgc ggcgtctctt
    23881 tccttgatgc gcctgaagaa atttttgcca ccgtgctgaa ttatctgggt aaagatccga
    23941 atagcagcaa agcggatgac tacaccggcc cggcaaccga tctgttgttg aagctacggc
    24001 caaacattcg ctatttccac tcctcgcaat acattaacga tctggctaat ggcgatacct
    24061 gtgtggccat cggctgggcg ggcgatgtct ggcaggccgc taaccgggcg aaagaggcga
    24121 aaaatggcgt caatatctct ttctcgatcc ccaaagaggg ggtaatggca ttttttgatg
    24181 tgtttgccat gccggctgac gccaaaaata aagacgaggc ctaccagttc cttaattatc
    24241 tgctgcgcct tgatgtgatt gctcatattt ccgatcacgt tttctacgcc aatgcgaata
    24301 aagaggcgac ggcgctggtc agccagcagg tgcgcgataa cccaggaatt tatccgccgg
    24361 cggatgtgcg ggccaagttg tttaccctga aagtgcagga gccgaagatt gatcgcgtcc
    24421 gcacccgcgc atggacgaag gtgaaaagcg gtaagtaatt tattaacggt atggcctgat
    24481 aagcgtgcgc tatcgggcat tccaccgttt gtatcgtttg attgtgttat gccggagagc
    24541 gccttgtgaa tgatgccccc caccgcccgc aggtgaaaac ccgtaaagcg ctgacgccgc
    24601 ttctggaaat tcgcaacctg acgaagtcat tcgacgggca acatgctgtc gatgatgtca
    24661 gtctgactat ctataaaggt gagatttttg ccctgctggg cgcgtcaggt tgtggaaaat
    24721 cgactctgtt acggatgctg gcgggttttg aaccgccgag cagcgggcaa attatgctcg
    24781 acggcgtcga tctggcgcat gttccgccgt atcagcgtcc gattaatatg atgtttcagt
    24841 cctatgcgtt gtttccgcat atgacggtag agcagaacat cgcttttggt ctgaagcagg
    24901 acaaactgcc gaaggcggag attaccagcc gcgtcaatga gatgctgggt ctggtgcaca
    24961 tgcaggagtt tgcaaaacgt aagccgcatc agctttccgg cggtcagcgt cagcgcgtgg
    25021 ccctggcgcg cagcctggcg aaacgtctta agctgctctt gttggatgaa ccgatgggcg
    25081 cgctggataa aaaattacgc gaccggatgc agctggaagt ggtggatatc cttgagcgcg
    25141 tcggcgtgac ttgcgtcatg gtgacgcacg atcaggaaga agccatgacg atggcggggc
    25201 gcattgccat catgaaccgt ggaaaatttg tgcaaattgg cgaaccggag gagatttacg
    25261 agcatccgac aacccgctat agcgccgaat ttatcggatc ggtaaatgtt tttgagggct
    25321 tactgaaagc gcgtgaagag gacggtctgg tcattgacgc gcccggtttg gttcatccgt
    25381 taaaagtcga tgcagatgcc tctgtcgttg ataatgtgcc ggtatatgtg gcgctacgtc
    25441 cggaaaaaat catgctgtgt gagtcgccgc ctgccgatgg ctataatttc gccgtcggcg
    25501 aagtggcgca tattgcgtat ctcggcgatc tgtctattta tcatgtgcgg ctaaaaagcg
    25561 ggcagatgat cagcgctcaa ctgcagaatg cgcaccgtta ccggaaaggg ttaccgacct
    25621 ggggcgatga agtgcgtttg tgctgggaag cggatagctg cgtggtcctg acggtataag
    25681 ggggaaacat gagcacactt gaacctccgg cacgcatcag taaacctggc ggcgcggcgc
    25741 tatggttggc gcgaatgcaa atgaaacatg ggcgtaagct ggttattgct ttgccttata
    25801 tctggctcat tctgctgttt ttactgccgt ttcttatcgt ctttaagata agcctggcgg
    25861 aaatggcgcg ggcgatcccg ccgtataccg atctgctgga atgggctgac ggtcagttgt
    25921 cgattacgct caacctcggc aattttttgc aactgaccga cgatccgctc tatttcgaag
    25981 cctgtctgca atcgttacaa attgccggta tttccacaat ctgctgcctg ctgctgggct
    26041 acccgctggc gtgggcggtg gcgcacagca agccctccac gcgcaatatc ctgctgctgt
    26101 tggtgattct gccctcgtgg acgtcttttt taatacgcgt ctatgcctgg atgggcattt
    26161 tgaaaaacaa cggtgtgctg aacaatgtgt tgctgtggct aggggttatc gatcagccgc
    26221 tgacgatcct gcacactaac ctggccgtct atatcggcat tgtttatgcg tatctgctgt
    26281 ttatggttct gcccatttat accgcgttga cgcgcattga ttattcgctg gtggaagcgt
    26341 cgctggatct cggcgcccga ccgatgaaaa cattttttag catcattgtc ccgctcacca
    26401 aaggcggaat catcgccggc tcgatgctgg tttttatccc ggcggtgggc gagttcgtga
    26461 tcccggaact gcttggcggg ccggacagta tcatgattgg tcgcgtcctg tggcaggagt
    26521 ttttcaataa ccgcgactgg ccggtggctt ctgcggtcgc cattattatg ttgctgctgc
    26581 tgatagtccc gatcatgtgg ttccataaac atcagcaaaa aagtgtgggg gagcacggat
    26641 gaataactta ccggtcgttc gctcgccctg gcgcattctg attctggtgc tggggtttac
    26701 ttttctctat gcgccgatgt taatgttggt gatttactcg tttaacagtt cgaagctggt
    26761 gacggtgtgg gcgggatggt cgacgcgctg gtatggcgag ctctttcggg ataccgccat
    26821 gatgagcgca gtgggactaa gcctgacaat tgccgcctgc gcggcgacga tggcggtggt
    26881 gctcggtact atcgccgcgg tggtgatggt gcgatttgga cgatttcgcg gcgcaaacgg
    26941 ctttgcgttt atgatcaccg cgccgctggt gatgccggat gtgattaccg ggctgtcgct
    27001 gctgctgctg tttgtcgcgc tcggtcatac tatcggctgg ccctccgatc gcggaatgct
    27061 gaccatctgg ttggcgcacg tcactttctg taccgcctat gtggcagtgg tgatcgcttc
    27121 gagattacgc gaactggatc gttcgattga agaggcggcg atggatcttg gcgcggcgcc
    27181 gttgaaggtc ttttttgtca ttacgttacc gatgatcatg ccagcggtga tctcgggctg
    27241 gctgttggcc tttacgctct cccttgacga tctggtgatt gccagcttcg tttccggtcc
    27301 cggcgccacc acgctaccga tgctggtttt ctccagcgtg cgcatgggtg tgaacccgga
    27361 aatcaacgcg ctggcgacgt taatcctcgg cgtggtagga atcatcggat ttattgcctg
    27421 gtacctgatg gcgcgagcgg aaaaacagcg gattcgcgat atccagcgtg caagacgcgg
    27481 ctgaagccac taaaatcttc cactatggca atgcgttgcc gcgcgagtcg cggcatcatt
    27541 ttcagggaag acattcattg ggatttataa agcaatcaac ctcatcacat gcccgtttaa
    27601 atgtgcctac gctggtgcag gttgcggcta tggcgattat tttgattcgc ggtctcgatg
    27661 tgctgatgat tatgaatacc ctcggcatac gcgggatggg cgagtttatt catcgcagcg
    27721 tgcagacgtg gagcttaacc ctggtctttc tggccagctt agtgctggtc tttattgaaa
    27781 tttattgtgc gttttcgctg gtgaaaggcc gtagctgggc gcgctgggtg tacctggcgg
    27841 cacaaattat tgtgagtggg tatctgtggg cggcgtcgtt aggctacggg tatccggagt
    27901 tgtttagcat cgcgggagaa tcgaagcgtg atatcctgca ttccctggtc atgcaaaaac
    27961 tccccgatct tttaattctg tttctgctgt ttattcccgc tcccagccgt cggttcttcc
    28021 ggctgcaata atgtgtataa tcgtcacccc ggataatatg aaggtttttt ggtatgcagt
    28081 gcgcactcta tgacgcgggt cgctgccgtt cctgtcaatg gattacgcag tcggttaacg
    28141 aacaactttc cgcaaaaaca gccgatttac atcgtttgct ggccgggctg cctgttgaac
    28201 agtggtgcgc gccgattagc ggcccggaac agcatttccg caacaaagcg aaaatggtcg
    28261 tgagcggtag tgtagaaaaa ccgctcttcg ggatgctgca tcgcgacggt acgccggtcg
    28321 atctttgcgc ttgcccgctg tatcccgcct cctttgcccc cgtattcagc gcgctaaaac
    28381 cttttattgc ccgtgccgga ctcacgcctt ataacgtggc gcgaaaacgc ggcgaactga
    28441 aatacctgtt gctgacggaa agtcagttcg atggcggcat gatgctacgc ttcgtgttgc
    28501 gttcagaaac caaacttacg caactgcgcg cggcgttacc gtggctgcgc gcgcaactgc
    28561 cgcagctcag agtgatcact gcgaatatcc agccggtaca tatggcgatt atggaagggg
    28621 agacggaaat ctatctgacg gatcagcagg cgctggcgga acgttttaac gatgtgccgc
    28681 tgtggattcg tccgcaaagt ttctttcaga ccaaccctac ggtcgccagc cgattatatg
    28741 cgacggcgcg cgactgggta gggcaattgc cggtacgcca tatgtgggat cttttttgcg
    28801 gagtgggcgg attcggcctg cactgcgcga cgccgcagat gcaattaacc ggtattgaga
    28861 tcgcgccgga ggcgattgcc tgcgcgaagc aatccgctgc cgagctggga ttaacccgcc
    28921 ttcatttcta ggcgctggat tccacccaat tcgccaccgc acaaggcgaa acgcccgatc
    28981 tggtgttggt gaatcctccc cgccgcggca ttggcaagcc gttgtgcgat taccttgcac
    29041 aaatggcgcc gcgttttatc atttattcga gctgtaacgc gcagacgatg gcgcaggata
    29101 ttcgccatct gccgaactac cgtattcaac gtgttcagct tttcgatatg ttcccccata
    29161 ccgcgcatta tgaagtgtt
//
LOCUS       DAJVSD010000026        29080 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.026, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000026 DAJVSD010000000
VERSION     DAJVSD010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 29080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29080
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.026"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            93..1370
                     /gene="waaA"
                     /locus_tag="OQP62_000992"
     CDS             93..1370
                     /gene="waaA"
                     /locus_tag="OQP62_000992"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HCS1720605.1"
                     /translation="MLELLYTALLYLIQPLIWIRLWVRGRKAPAYRKRWGERYGFYRR
                     PLKPGGIMLHSVSVGETLAAIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGNDVQ
                     HVYLPYDLPDALNRFLNKIDPKLVLIMETELWPNLIAALHKRHIPLVIANARLSARSA
                     AGYAKLGKFVRTLLRRITLIAAQNEEDGERFVALGAKNNQVTVTGSLKFDISVTPQLA
                     AKAVTLRSQWAPHRPVWIATSTHDGEESIVIAAHQALLHQFPNLLLILVPRHPERFPD
                     AINLVRQAGLSYITRSSGEVPSASTQVVVGDTMGELMLLYGIADLAFVGGSLVERGGH
                     NPLEAAAHAIPVLMGPHTFNFKDICARLEQASGLITITDAATLAKEVSSLLTDADYRN
                     FYGRHAVEVLYQNQGALQRLLQLLEPYLPPKTH"
     gene            1379..1858
                     /gene="coaD"
                     /locus_tag="OQP62_000993"
     CDS             1379..1858
                     /gene="coaD"
                     /locus_tag="OQP62_000993"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HCS1720606.1"
                     /translation="MQKRAIYPGTFDPITNGHLDIVTRATQMFDHVILAIAASPGKKP
                     MFTLNERVALAQKATAHLGNVEVVGFSDLMANFARDRQANILIRGLRAVADFEYEMQL
                     AHMNRHLMPQLESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPDNVHQALMDKLK"
     gene            complement(1886..2695)
                     /gene="mutM"
                     /locus_tag="OQP62_000994"
     CDS             complement(1886..2695)
                     /gene="mutM"
                     /locus_tag="OQP62_000994"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HCS1720607.1"
                     /translation="MPELPEVETSRRGIEPHLVGATILHAHIRNGRLRWPVSDEIYRL
                     SDTPVLSVQRRAKYLLLELPDGWIIIHLGMSGSLRILSEALPAEKHDHVDLVMSNGKI
                     LRYTDPRRFGAWLWTKELEGHNVLAHLGPEPLSDEFNGEYLQQKCAKKKTAIKPWLMD
                     NKLVVGVGNIYASESLFAAGIHPDRLASSLSTEECDLLARVIKAVLLRSIEQGGTTLK
                     DFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRHCQK"
     gene            complement(2793..2960)
                     /gene="rpmG"
                     /locus_tag="OQP62_000995"
     CDS             complement(2793..2960)
                     /gene="rpmG"
                     /locus_tag="OQP62_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HCS1720608.1"
                     /translation="MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVR
                     QHVIYKEAKIK"
     gene            complement(2981..3217)
                     /gene="rpmB"
                     /locus_tag="OQP62_000996"
     CDS             complement(2981..3217)
                     /gene="rpmB"
                     /locus_tag="OQP62_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008457442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HCS1720609.1"
                     /translation="MSRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEK
                     RFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY"
     gene            complement(3435..4100)
                     /gene="radC"
                     /locus_tag="OQP62_000997"
     CDS             complement(3435..4100)
                     /gene="radC"
                     /locus_tag="OQP62_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HCS1720610.1"
                     /translation="MDTLDELLPREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLA
                     KEILQHFGSLYGLLSADFAQFRGVNGIGLAKFAQLKGIAELARRYYSVRMNEESALLS
                     PEMTREFLQSQLTGEEREIFLVIFLDAQHRVLQHSRLFSGTLNHVEVHPREIVREAIK
                     LNASAVILAHNHPSGCAEPSKADKLITERVIKCCQFMDIRVLDHLIIGRGEYVSFAER
                     GWI"
     gene            4276..5496
                     /gene="coaBC"
                     /locus_tag="OQP62_000998"
     CDS             4276..5496
                     /gene="coaBC"
                     /locus_tag="OQP62_000998"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HCS1720611.1"
                     /translation="MSLAGKKIVLGVSGGIAAYKTPELVRRLRERGADVRVAMTEAAK
                     AFITPLSLQAVSGYPVSDSLLDPAAEAAMGHIELGKWADLVILAPATADLIARVASGM
                     ANDLVSTICLATPAPVAVLPAMNQQMYRAAATQHNLEVLASRGLFIWGPDSGSQACGD
                     VGPGRMLDPLAIVDKAAAHFAAVNDLRHLNIMITAGPTREPLDPVRYISNYSSGKMGF
                     AIAAAAARRGANVTLVSGPVSLPMPPFVKRVDVITALDMEAAVQAAVQQQHIFISCAA
                     VADYRAETIASEKIKKQAAQSDELIIKMVKNPDIVAGVAALSDNRPYVVGFAAETNNV
                     EEYARQKRTRKNLDLICANDVSLSNQGFNSDKNALHLFWQDGDKVLPLERKELLGQLL
                     LDEIVTRYDEKNRR"
     gene            5474..5932
                     /gene="dut"
                     /locus_tag="OQP62_000999"
     CDS             5474..5932
                     /gene="dut"
                     /locus_tag="OQP62_000999"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000976070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HCS1720612.1"
                     /translation="MMKKIDVKILDPRVGQQFPLPTYATSGSAGLDLRACLDDAVELA
                     PGATTLVPTGLAIHIADPSLAAVMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMVSIW
                     NRGQDSFTIEPGERIAQMVFVPVVQAEFNLVEAFDATERGEGGFGHSGRK"
     gene            6040..6636
                     /gene="slmA"
                     /locus_tag="OQP62_001000"
     CDS             6040..6636
                     /gene="slmA"
                     /locus_tag="OQP62_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000818604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion factor SlmA"
                     /protein_id="HCS1720613.1"
                     /translation="MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVS
                     EAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTSTRLRLIVLLILGFGERN
                     PGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYTTDKNLLAS
                     QLLAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ"
     gene            complement(6714..7355)
                     /gene="pyrE"
                     /locus_tag="OQP62_001001"
     CDS             complement(6714..7355)
                     /gene="pyrE"
                     /locus_tag="OQP62_001001"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HCS1720614.1"
                     /translation="MKPYQRQFIEFALNKQVLKFGEFTLKSGRKSPYFFNAGLFNTGR
                     DLALLGRFYAEALVDSGIEFDLLFGPAYKGIPIATTTAVALAEHHDKDLPYCFNRKEA
                     KDHGEGGSLVGSALQGRVMLVDDVITAGTAIRESMEIIQAHRATLAGVLISLDRQERG
                     RGEISAIQEVERDYGCKVISIITLKDLIAYLEEKPDMAEHLAAVRAYREEFGV"
     gene            complement(7434..8150)
                     /gene="rph"
                     /locus_tag="OQP62_001002"
     CDS             complement(7434..8150)
                     /gene="rph"
                     /locus_tag="OQP62_001002"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006803115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HCS1720615.1"
                     /translation="MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE
                     EGVPRFLKGQGQGWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAV
                     DLKTLGEFTITLDCDVIQADGGTRTASITGACVALADALNKLVANGKLKTNPMKGMVA
                     AVSVGIVNGEAICDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLL
                     ALARGGIESIVATQKAALEN"
     gene            8276..9139
                     /locus_tag="OQP62_001003"
     CDS             8276..9139
                     /locus_tag="OQP62_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HCS1720616.1"
                     /translation="MIRSMTAYARREIKGEWGSATWEMRSVNQRYLETYFRLPEQFRS
                     LEPVVRERIRTRLTRGKVECMLRFEPDASAQGELILNEKLAKQLVSAANWVKMQSDEG
                     EINPVDILRWPGVMAAQEQDLDAIAAEILAALDGTLDDFIVARETEGQALKALIEQRL
                     EGVSAEVAKVRAHMPEILQWQRERLVAKLEDAQVQLENNRLEQELVMMAQRIDVAEEL
                     DRLEAHVKETYNILKKKEAVGRRLDFMMQEFNRESNTLASKSINADVTNSAIELKVLI
                     EQMREQIQNIE"
     gene            complement(9189..10091)
                     /locus_tag="OQP62_001004"
     CDS             complement(9189..10091)
                     /locus_tag="OQP62_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1720617.1"
                     /translation="MNLLQMDMNLLKVLYVLLETSSTGKTAQKLALSPSAVSHALMRL
                     RDALNDPLFRREGNRQIATPYAQALRDKLAPVFVSLNEELFGDKENGSRCFRVVLPPA
                     LNALLTPVLAEKGHLHQAVIECLPFARRPWRDELLDSSVDLVLAIGDHQKQVSALHYE
                     RVGTTRLIAVYGAPLRSRLENAAALNFADLQHYQHIYCLPWTKENNELDRQQARAGFE
                     RPLAFVCHDYSQLAPAVQSAPLMAIVPRPWYENLSDKRGLFVLPLAGEQAEGAIFMQY
                     RASTVEWKRRLIDAIRRKLKTYYR"
     gene            10165..11049
                     /locus_tag="OQP62_001005"
     CDS             10165..11049
                     /locus_tag="OQP62_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001083230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HARLDQ motif MBL-fold protein"
                     /protein_id="HCS1720618.1"
                     /translation="MNRYVLFFVCIFSTSALPAMAALDPSQPLSPAPPLSLFKAWAKP
                     MKPFQITEGVWYVGTENLSSILLTTPAGHILIDAGLDESAPQIKANIEAAGFRFTDVR
                     YLLSSHARLDQAGGMARLKAWSGAQLVASQPNADQMARGGRQDFALGDALPFPLVTTD
                     KIIHNQESISLGGVTVTALFTPGHLPGSTSWRVTLRNGKTLIYADSLATPDYLLINNK
                     NYPDLVTDIQSSFKTLAAQHVDIFIANKGDRFGLLEKRQQLRNGDTQAFFDSNGLQQY
                     VERSRQRFITQLTAQQPQ"
     gene            11297..11914
                     /locus_tag="OQP62_001006"
     CDS             11297..11914
                     /locus_tag="OQP62_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HCS1720619.1"
                     /translation="MLLHVLYLIGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGG
                     SVRDILLGHYPLGWVKHPEYVIIVATAAVLTTIVAPVMPYLRKLFLVLDALGLVVFSI
                     IGAQIALDMGEGPIIAVVAAATTGVFGGVLRDMFCKRIPLVFQKELYAGISFASAVLY
                     IALQHYVMNPDVVVISTLLFGFTARLLALRLKLGLPVFYYRHEGH"
     gene            complement(11911..13595)
                     /gene="ligB"
                     /locus_tag="OQP62_001007"
                     /pseudo
     CDS             complement(11911..13595)
                     /gene="ligB"
                     /locus_tag="OQP62_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462639.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigB"
     gene            13852..14475
                     /gene="gmk"
                     /locus_tag="OQP62_001008"
     CDS             13852..14475
                     /gene="gmk"
                     /locus_tag="OQP62_001008"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000046969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HCS1720620.1"
                     /translation="MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRAP
                     RPGEVHGEHYFFVNHDEFKTMIGREAFLEHAEVFGNYYGTSRETIEQVLATGVDVFLD
                     IDWQGAQQIREKMPQARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHY
                     AEYDYLIVNDDFDTALSDLKTIIRAERLRMSRQKQRHDALISKLLAD"
     gene            14530..14805
                     /gene="rpoZ"
                     /locus_tag="OQP62_001009"
     CDS             14530..14805
                     /gene="rpoZ"
                     /locus_tag="OQP62_001009"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013511051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HCS1720621.1"
                     /translation="MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEND
                     KTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR"
     gene            14824..16935
                     /gene="spoT"
                     /locus_tag="OQP62_001010"
     CDS             14824..16935
                     /gene="spoT"
                     /locus_tag="OQP62_001010"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HCS1720622.1"
                     /translation="MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEP
                     YITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSK
                     LDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIAR
                     ETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVRAARGNRKEMIQKILS
                     EIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVHDSDTCYRV
                     LGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMG
                     VAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFT
                     PEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLSSGQTVEIITAPG
                     ARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLAEIPQENI
                     QRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQQGEAVVPTVAQSNHGHLPIKGADG
                     VLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETEQ
                     EFITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSTFIRLTARDRVHL
                     ANIMRKIRVMPDVIKVTRNRN"
     gene            16940..17629
                     /gene="trmH"
                     /locus_tag="OQP62_001011"
     CDS             16940..17629
                     /gene="trmH"
                     /locus_tag="OQP62_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(18)-2'-O)-methyltransferase
                     TrmH"
                     /protein_id="HCS1720623.1"
                     /translation="MNPKRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVG
                     VHEVHAIWPGSRMRTMASAAAGSNSWVQVKTHRTIDDAVAHLKGRGMQILATHLSDKA
                     VDFREIDYTRPTCILMGQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYE
                     AQRQRQNAGMYLRENSMLPEDEQQRLLFEGGYPVLAKVAKRKGLPYPRVNQQGEIDAD
                     ADWWATMQAAG"
     gene            17635..19716
                     /gene="recG"
                     /locus_tag="OQP62_001012"
     CDS             17635..19716
                     /gene="recG"
                     /locus_tag="OQP62_001012"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HCS1720624.1"
                     /translation="MSGRLLDAVPLNSLTGVGAAQSSKLAKIGLHTVQDLLLHLPLRY
                     EDRTHLYPIGELLPGIYATVEGEVLNCNITFGGRRMMTCQISDGSGILTMRFFNFNAA
                     MKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQ
                     ATLRKLTDQALELLDTCAIAELLPPELAQGMMSLPEALRTLHRPPPTLQLADLETGKH
                     PAQRRLILEELLAHNLSMLALRAGAQRYHTQPLSTNNILKDKLLASLPFKPTSAQARV
                     VAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHA
                     NNFRNWFEPLGVEVGWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLA
                     LVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE
                     LPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATW
                     EELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMI
                     IENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQ
                     KDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRIARHIHERYPQQAQALIER
                     WMPETERYSNA"
     gene            complement(19752..20957)
                     /gene="gltS"
                     /locus_tag="OQP62_001013"
     CDS             complement(19752..20957)
                     /gene="gltS"
                     /locus_tag="OQP62_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016507315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/glutamate symporter"
                     /protein_id="HCS1720625.1"
                     /translation="MFELDTLSTLVAATLVLLLGRKLVQSVSLLKKYTIPEPVAGGLL
                     VAVALLVLKKSVGWEVNFDMTLRDPLMLAFFATIGLNANLASLRKGGRVVGVFLVVVV
                     GLLLMQNAIGIGMASLLGLDPLMGLIAGSITLSGGHGTGAAWSKLFVERYGFASATEV
                     AMACATFGLVLGGLIGGPVARYLVKHSTTPDGMPDDQAVPTAFEKPDVGRMITSLVLI
                     ETIALIAICLTVGKIVAQLLAGTVLELPVFVCVLFVGVILSNGLALVGFYRVFERAVS
                     VLGNVSLSLFLAMALMSLKLWELASLALPMLAILVVQTIFMALYAIFVTWRMMGKNYD
                     AAVLAAGHCGFGLGATPTAIANMQAITDRFGPSHMAFLVVPMVGAFFIDIVNALVIKL
                     YLMLPIFAQ"
     gene            21184..22575
                     /gene="xanP"
                     /locus_tag="OQP62_001014"
     CDS             21184..22575
                     /gene="xanP"
                     /locus_tag="OQP62_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine/proton symporter XanP"
                     /protein_id="HCS1720626.1"
                     /translation="MSVNAIEPADAQPVAQTQNSELIYRLEDRPPLPQTLFAACQHLL
                     AMFVAVITPALLICQALGLPAQDTQHIISMSLFASGVASIIQIKAWGPVGSGLLSIQG
                     TSFNFVAPLIMGGTALKTGGADVPTMMAALFGTLMLASCTEMVLSRILHLARRIITPL
                     VSGVVVMIIGLSLIQVGLTSIGGGYAAMSDNTFGAPKNLLLAGVVLAIIILLNRQRNP
                     YLRVASLVIAMAAGYLLAWFMGMLPENNAPVSQDILMVPTPLYYGLGIDWNLLLPLML
                     VFMITSLETIGDITATSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCF
                     GQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIA
                     ASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPQILQFAPEWVKNLLSSGIAAGGIT
                     AIVLNLILPPEKP"
     gene            22696..24405
                     /locus_tag="OQP62_001015"
     CDS             22696..24405
                     /locus_tag="OQP62_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HCS1720627.1"
                     /translation="MKLIGRLLLYVLIACLVVIFGFYFLLQTRWGADHVSNWVSENSG
                     YHLTFDVMDHRFSAPSHLLLENVTFGRDGQPATLVAKTVDIGLSIRQLTAPLHVDTIL
                     LQDGTLNISVQTAPFPFEADRLQLRNMALNSPGSEWRLSAQRVNGGVMPWRPEAGRVL
                     GNKAQIQLSAGSLTLNDVPATNVLIEGSIDHDQMMLNTVGADMARGALTGVARRNADG
                     SWVVENLRLNDIRLQSDKSLSEFFAPLTTVPSLQIGRLEVTDSSLQGPDWAVTDLDLS
                     LRNLTLRKEDWQSQEGKLSMNASEFIYGSLHLLDPILNAEFSPQGVALRQFTTRWEGG
                     MVRTSGAWLRESKALILDDTAIAGLEYTLPENWKQLWMKPLPDWLNSLTLKKFSASRN
                     LVIDIDPTFPWQITALDGYGANLELVQHHQWGVWSGNATLNAAAATFNRVDVRRPSLS
                     LTANASTVNISDLSAFTEKGILEATASVSQQPQRQTQISLNGRGVPMDVLQQWGWPAL
                     PIAGDGNIQFTASGNIQADAPLKPTVNGQLHAVNAQKQQIMQTMQAGVVSGGEVTSTE
                     PAL"
     gene            complement(24508..26826)
                     /gene="yicI"
                     /locus_tag="OQP62_001016"
     CDS             complement(24508..26826)
                     /gene="yicI"
                     /locus_tag="OQP62_001016"
                     /EC_number="3.2.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-xylosidase"
                     /protein_id="HCS1720628.1"
                     /translation="MKISDGNWLIQPGLNLIHPVQVFDVEQHGNEMVVYAAPRDVRER
                     TWQLDTPLFTLRFFSPQEGVIGVRMEHFQGALDNGPHYPLNVLQDINVEMQNNAEFAE
                     LKSGSLSVCVTKGELWSLDFLRNGVRITGSQLKNNGYVQDTNSGRNYMFERLDLGVGE
                     TVYGLGERFTALVRNGQTVETWNRDGGTSTEQSYKNIPFYITNRGYGVLVNHPQCVSF
                     EIGSEKVSKVQFSVESEYLEYFVIDGPTPKDVLNRYTQFTGRPALPPAWSFGLWLTTS
                     FTTNYDEATVNRFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPVTFPDPKGMIHR
                     LKAKGLKVCVWINPYIGQKSPVFQELKEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNP
                     QACEWYADKLKGLVKMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWN
                     VLKETVGVEEAVLFARSASVGAQQFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFW
                     SHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTEQK
                     CRMMPYLYREAARANEAGTPMMRAMMLEFPDDPACDYLDRQYMLGDAVMVAPVFSEAG
                     DVEFYLPEGRWTHLWRNDEVQGSRWHKQQHDFLSLPVYVRDNTLLALGNNSQKPDYAW
                     HEGTAFQLFHLDDGCEAVCEVPATDGSTIFTLQAKRTGNTITVSGEGEARNWTLCLRN
                     ITQISGTKCGSYAGSELGVVVTPQGNEVVITL"
     gene            complement(26838..28220)
                     /locus_tag="OQP62_001017"
     CDS             complement(26838..28220)
                     /locus_tag="OQP62_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside-pentoside-hexuronide family
                     transporter"
                     /protein_id="HCS1720629.1"
                     /translation="MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPA
                     GFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPD
                     LSLNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM
                     LSTVLMMPLVKLIGGENKALGFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMR
                     EDLRDIWHNDQWRIVGLLTILNILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGN
                     LIGSALAKPLTDWKCKVSVFWWTNALLAVISVAMFFVPMHATIAMFVFIFVIGVLHQL
                     VTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDA
                     AAKTQNSATISIIIALFTIVPAICYLLSAAIAKRYYTLKSPFLKTILEQLAQGAHRNE
                     QEFTHKELQN"
     gene            28508..28602
                     /locus_tag="OQP62_001018"
     tRNA            28508..28602
                     /locus_tag="OQP62_001018"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:28542..28544,aa:Sec,seq:tca)
BASE COUNT         6809 a         8072 c         7593 g         6606 t
ORIGIN      
        1 gagccaattt ggcgcaaaaa tgggaaaagt aatggtaaag cccaggctaa atacatagaa
       61 tccccagcac atccataagt cagctattta ctatgctcga attgctttac accgctcttc
      121 tctaccttat tcagcctctg atctggatac ggctttgggt gcgtggacgt aaagcgccgg
      181 cctatcgtaa gcgctggggt gaacgctacg gattctaccg ccgtccgttg aaaccgggcg
      241 gaatcatgct gcattccgtc tcggtgggcg aaactctggc ggccatccca ttggtccgcg
      301 ctctacgtca tcgctatccc gatctgccta ttaccgtaac gaccatgacg ccgaccggct
      361 cggagcgcgt ccagtccgcc tttggcaacg atgttcagca cgtttactta ccttatgatt
      421 tgcccgatgc gctcaatcgt ttcctcaata agattgatcc taagctggta ttgatcatgg
      481 agactgagct ctggccaaat ctgattgctg cgctgcacaa acgtcatatt ccgctggtta
      541 tcgctaatgc gcggctttcc gcccgctccg ccgcgggtta tgcgaagctt ggcaagtttg
      601 tccgtacgct cctgcgccgt atcaccctga ttgccgcgca aaacgaagaa gatggcgaac
      661 gctttgtggc attgggcgcg aagaacaatc aggtcacggt caccggcagt ctgaaatttg
      721 atatttcagt tacaccgcaa ctggcggcta aagccgttac gctacgtagc cagtgggcgc
      781 cgcaccgtcc ggtctggatt gccaccagca cccacgatgg cgaagagagt atcgttatcg
      841 ccgctcacca ggcgttatta catcaattcc cgaatttatt actgattctg gtgccccgcc
      901 atccggagcg tttcccggat gctatcaatc ttgtgcgtca ggcagggtta agctacatca
      961 ctcgctcttc gggcgaagtg ccgtccgcca gcacccaggt cgtggtaggc gataccatgg
     1021 gcgaattaat gttgctctat ggcattgccg atctcgcctt tgttggtggt tcgctggttg
     1081 aacgcggcgg tcacaacccg ctggaagccg ccgctcatgc gattccggta ctgatgggtc
     1141 cgcatacctt taactttaaa gatatttgcg cccgtctgga gcaggcgagc gggcttatca
     1201 cgattaccga tgcggctacg ctggcaaaag aagtttcctc tttactgacc gacgctgatt
     1261 atcgtaattt ctacggacgt cacgcagttg aagtgctgta tcaaaatcag ggcgcgctcc
     1321 agcgtctgct gcaactgctg gaaccttatc tgccaccgaa aacgcattga gggctgtcat
     1381 gcaaaaacgg gcgatttatc caggcacgtt tgatccgatt actaacggtc atctcgatat
     1441 tgtgacgcgc gcaacgcaga tgttcgacca tgtcattctg gccatcgccg ccagccccgg
     1501 caagaaaccc atgttcaccc tgaacgaacg tgtggcgctg gcgcaaaaag cgaccgcaca
     1561 cctgggtaac gtagaggtgg tgggttttag cgacctgatg gccaatttcg cccgcgacag
     1621 acaggcgaat atcctgattc gtggtctgcg cgcggtggcg gattttgaat atgaaatgca
     1681 gttggcgcat atgaatcgcc atctgatgcc gcaactggaa agcgttttcc tgatgccgtc
     1741 caaagagtgg tcgtttattt catcgtcgct ggtcaaagaa gtggcgcgcc atcagggcga
     1801 tgtgacccac tttctgcccg acaatgtgca tcaggcgcta atggataagt tgaaataagt
     1861 ttccttcctt gccgggcctg gcattttact tctgacagtg acggcaatag aacgtcgcgc
     1921 gctgtgcgtg tttcgttgcg actatcggcg taccgcatac ccgacacggc tcgcctttgc
     1981 gcccgtacac ctgcaactcc tgggcaaaat agcccggctt cccatcgctt tgcagaaaat
     2041 ccttcagcgt tgtcccgcct tgttcaatag agcgcagcaa aacggcttta atcacccgcg
     2101 ccagcaggtc gcactcctct gtcgagagtg acgacgccag gcggtcaggg tgaataccag
     2161 cggcaaacag cgactcgctg gcgtagatat tccccacgcc gaccaccagc ttgttatcca
     2221 tcagccaggg tttaatcgcc gtcttcttct tcgcgcattt ctgttgcaaa tattcgccat
     2281 taaactcatc gcttagcggc tccggtccca gatgcgccag tacgttatgt ccttccagct
     2341 ctttggtcca taaccaggcg ccaaagcggc gaggatcggt ataacgtaga attttgccat
     2401 tgctcatcac caaatcgaca tggtcgtgct tttccgccgg cagcgcttcc gacagtatcc
     2461 gcaagcttcc cgacatcccc aggtgaataa ttatccagcc gtcaggcaac tccagcagta
     2521 gatatttagc acgacgctga acgctaagga cgggtgtgtc gctcagacga taaatttcgt
     2581 ctgaaaccgg ccagcgcaga cgaccgttac ggatatgggc gtgcaggata gtagcgccaa
     2641 ctaaatgagg ttcaataccc cggcggctgg tttcaacttc gggtaattca ggcataacgt
     2701 ctccggctgt gtggcaggtc tcattaatat ggggacggcc agaaaacaaa aaaccccgcc
     2761 gaagcgaggt ttttgttaca tcaaagcgag aattatttga ttttcgcttc tttgtagatc
     2821 acgtgctgac ggacaactgg atcgaatttt ttcagttcca gtttttccgg cttagtacgt
     2881 ttgttcttcg tagtggtata gaagtgacca gtaccagcag aagaaaccag cttgattttc
     2941 tcacgaatac ctttagccat gatttatttc ctcttagtac ttagtacttt tcgccacggg
     3001 cacgcagttc agacagaact gtttcgatgc cttttttatc gatgatacgc atacctttag
     3061 cagatacacg cagggtgaca aaacgcttct cgctctcaac ccagaaacgg tgagagtgca
     3121 ggttaggcag gaaacggcgt ttagtcgcgt tcagtgcgtg ggaacggttg ttaccggtca
     3181 ccggacgctt gccagtaact tggcagactc gggacatgtc tattctccaa aaatcaaatt
     3241 agctcgagct tcgtatgggg tatcggcgcc tcgtcaggct ttacagcctg gtcatcgcgc
     3301 agttctattg aactctcgat tgccaggccc aaatgccaaa cccgagattc tcaaaggtgg
     3361 cgtagtatac gctgacccgg cgatatgctc aagtcccgaa cagacaaaga tcccgatgga
     3421 tcgcgcaaag aatcttaaat ccagccgcgt tcggcaaaag aaacgtactc tccgcgccca
     3481 attatcaggt gatcgagcac ccggatatcc ataaactggc aacactttat cacgcgctca
     3541 gtgataagtt tatctgcttt acttggctct gcgcagcctg aagggtgatt atgcgccaga
     3601 atgaccgctg aagcattgag tttaatcgct tcccgaacaa tctcacgcgg atgcacctct
     3661 acgtggttaa gcgtgccgga aaacaggcgg ctgtgctgaa gcacccggtg ctgggcatct
     3721 aggaagatca ccagaaagat ctcacgctct tcgcccgtca gttggctttg cagaaattcc
     3781 cgcgtcattt ccggactcag caacgcactt tcctcattca tgcgcacgct gtaatagcgc
     3841 cttgccagct cagcaatgcc tttcaactgc gcgaatttcg ccaggccgat gccgtttacg
     3901 ccgcgaaact gcgcaaagtc cgccgacagc aggccataca gcgacccaaa gtgctgcaat
     3961 atctcttttg ccaacgtcat aacatctttt cccggcgtgc cggtacgtaa aaaaagcgcc
     4021 agcagttcca cgtcgctgag ggaagcaatg ccggatctga gcattttttc acgcggcaat
     4081 aattcgtcca acgtatccat acgcgcacct ccttttttaa ggaagcggca tagtggcaca
     4141 gcctttggga gagatcgacg ccccgatttt gttcttgcgt agcgcctcgc aaagtggagc
     4201 gcaggcaaag acacgacgcc gtagagattg tgataaaata gccgcctttc aaagtcaccc
     4261 aacaggaaag acatgatgag cctggccggt aaaaaaattg ttctcggcgt tagcggcggt
     4321 atcgctgcgt ataaaacgcc ggagctggtg cgccgtttac gtgagcgcgg cgctgacgtg
     4381 cgcgtggcaa tgaccgaggc ggcaaaagcc tttattaccc ccctgagctt acaggccgtg
     4441 tcgggctatc ccgtatccga cagtctgctt gaccctgccg ccgaagctgc gatggggcat
     4501 atcgagttgg ggaaatgggc cgacctggtg attcttgccc ccgcgaccgc cgatctgatc
     4561 gcccgtgtag catcgggtat ggctaatgat ttagtctcca ccatctgcct ggcgacgcca
     4621 gccccggtgg ccgttcttcc ggccatgaac caacagatgt accgcgctgc cgccacgcaa
     4681 cataatctgg aggtgctcgc ctctcgcggc ctgttcattt gggggccgga tagcggcagt
     4741 caggcgtgcg gcgatgtagg cccaggccga atgctggacc cattagctat cgttgataag
     4801 gccgccgcgc atttcgctgc cgtcaacgat ctgcgacatc ttaatatcat gattacggca
     4861 ggcccgacgc gcgaaccgct cgacccggtg cgttatattt ccaactacag ctccggtaaa
     4921 atgggcttcg ctattgcggc ggccgcagcg cgtcgcggcg caaatgtcac gctggtctcc
     4981 ggtcccgttt cgttaccgat gccgcctttt gtaaaacggg ttgatgtcat aaccgcgctg
     5041 gacatggaag ccgctgttca ggccgccgtt caacagcagc atattttcat tagctgcgcc
     5101 gccgtggctg actatcgcgc agagactatt gccagtgaaa aaatcaaaaa acaggcggcg
     5161 caaagtgatg aattaataat aaaaatggtc aaaaacccgg acattgtcgc cggggtggcc
     5221 gcactcagtg acaatcgccc ctacgttgtt gggtttgccg cggaaacgaa taatgtggaa
     5281 gaatacgccc ggcaaaaacg tacccgtaag aaccttgacc tgatttgtgc aaatgatgtt
     5341 tctctttcaa atcagggatt taatagcgat aaaaacgctt tacacctttt ctggcaggat
     5401 ggagataaag tcttaccgct tgagcgaaaa gaactcctgg gccaattatt actcgacgag
     5461 atcgtgaccc gttatgatga aaaaaatcga cgttaagatt ctggacccgc gtgttggtca
     5521 gcagtttccg ctgccgactt atgctacttc tggttctgcc gggcttgacc tgcgcgcctg
     5581 tctcgacgac gccgtagaac tggcgcctgg cgcaacgacg ttggtgccta ccggactggc
     5641 cattcatatc gccgatccat cattggcggc agtcatgttg ccgcgttctg gcctgggcca
     5701 taaacatggt atcgtgctgg gcaacctggt cgggctgatt gattccgatt atcaggggca
     5761 actgatggtt tcgatctgga accgtggtca ggacagtttt accattgaac cgggcgaacg
     5821 tatcgcgcaa atggtgtttg ttccggtcgt tcaggccgaa tttaatctgg tggaagcatt
     5881 tgacgctacc gaacgtggcg agggcggctt cggtcattct ggccgtaagt aaattttacg
     5941 catccccata acgtcataat actgccgcaa gcgctgagtt tgcggttata gcgtgggtgc
     6001 tcgcctggca agtgcttatt ttcaggggta ttttgtaaca tggcagaaaa acaaactgcg
     6061 aaaaggaatc gtcgcgaaga aatacttcag tcactggcgc tgatgcttga atccagcgat
     6121 ggaagccaac gcatcacgac ggcaaaactg gcggcctcgg tcggcgtttc cgaagcggcg
     6181 ctataccgcc attttcccag caagacccgc atgttcgata gcctgattga gtttatcgaa
     6241 gatagtctga ttacccgtat caatctgatt ttaaaagatg aaaaagacac cagcacgcgt
     6301 ttgcgcctga ttgtgttact gattctgggt tttggcgaac gcaaccctgg cctgacgcgc
     6361 attcttaccg ggcatgcgct gatgtttgaa caggatcgcc tgcaggggcg cattaatcag
     6421 ctttttgaac gcatcgaagc gcagctccgc caggtgctac gagaaaaaag aatgcgtgaa
     6481 ggcgaaggct acacgacgga taaaaatctg ctggcaagcc agctgttagc cttctgtgaa
     6541 ggtatgcttt cacggttcgt gcgtagcgaa tttaaatacc gcccaacgga cgatttcgac
     6601 gcccgctggc cgctcattgc cgcgcagttg cagtaacgct gactggatag tggctcacgc
     6661 cttatccagg cgacagaaat ataggcccgg taaagcgcca ccgggcaatt cgcttacacg
     6721 ccaaattctt cccggtatgc tcgcacagcc gccagatgct cagccatatc aggtttttct
     6781 tccagatagg caatcaggtc tttcagcgta atgatggaga taaccttaca accatagtcg
     6841 cgctccactt cctgaatcgc ggaaatctcg ccgcggccac gttcctgacg atccagcgaa
     6901 atcagtacgc cagccagtgt agccctgtgc gcctgaataa tctccatcga ctcgcgaatc
     6961 gccgtacctg cggtaatcac gtcatccacc agcatcacgc ggccctgtag cgcgctgccc
     7021 accagactcc cgccttcgcc atgatctttt gcctctttgc ggttaaagca gtacggcagg
     7081 tctttatcgt gatgttccgc cagcgcaacc gccgtcgtcg tcgcgatcgg aatacctttg
     7141 tacgcggggc caaacagcag atcaaattca ataccggaat ccaccagcgc ttcggcataa
     7201 aaacggccta acaacgccag gtcgcgcccg gtattaaaca gcccggcgtt gaagaaatag
     7261 gggcttttgc gcccggattt cagcgtaaac tcgccaaact ttagtacctg cttgttaagc
     7321 gcaaactcaa taaactggcg ctgatacggt ttcatggatt cgctcctttt cttactttca
     7381 tcatttacga aatttacgga caaaaaaaag gcgacttttc agtcgcctta aaatcaattt
     7441 tctaacgccg ccttctgcgt cgccacaatg gattcaattc cccctcgggc cagcgccaac
     7501 aaagtgagaa gttcttcatg gctgaacggc tcgccttccg cggtaccctg aacttcaata
     7561 atgcggccgt cttcagtcat cacgacgttc atgtcggttt ctgcggcgga atcttcaaca
     7621 tattccagat cgcagatcgc ttcgccgtta acgatgccta cggaaaccgc cgccaccatg
     7681 cctttcatcg gattggtttt cagcttaccg ttggcaacca atttattcag cgcatccgcc
     7741 aacgccacgc aggcaccggt aatagacgct gtacgcgtac cgccatctgc ctggattaca
     7801 tcgcagtcca gcgtaatggt aaattcgccg agcgttttca gatcgaccgc cgcacgcagc
     7861 gcacgcgcga tcaaacgctg aatttccata gtacgaccgc cctgcttacc ctttgccgct
     7921 tcgcgcgcat tacgggtatg ggtagcgcga ggtaacatgc catactctgc ggtgatccac
     7981 ccctggcctt gtcctttcag aaaacgtgga acgccttctt caatggaggc agtgcacaac
     8041 actttggtat ctccaaattc gaccagtacc gagccttcag cgtgttttgt atagttacgg
     8101 gtcagggtta cgggacgcac ctgattagcg ctacggcctg ctggacgcat attgagatct
     8161 ccggcttaaa acgaatgtgg ctgcgcatta tacggacttc cgatggttat tcctatcctg
     8221 acaaggcatg gatagctata atcccctcat ctctccttta aaaacgggaa catctatgat
     8281 ccgcagtatg accgcctacg cccggcgtga aatcaagggt gaatggggta gcgcgacctg
     8341 ggaaatgcgc tcggtaaacc agcgttatct ggaaacttac tttcgtctgc cggaacagtt
     8401 ccgtagtctt gaacccgtcg tgcgcgaacg cattcgtaca cgcctgacgc gcggcaaagt
     8461 cgaatgtatg ctgcgttttg aacccgatgc cagcgcgcaa ggcgagctta ttctgaatga
     8521 aaagctcgcg aaacaattag ttagcgccgc aaactgggtc aaaatgcaga gcgacgaagg
     8581 ggaaatcaat ccggttgata ttttgcgctg gccaggtgtc atggcggcgc aagagcagga
     8641 tctggacgcg attgccgcag aaattttagc cgcactggac ggtacgctgg atgactttat
     8701 cgtcgcgcgc gaaacggaag gccaggcgct gaaagcgctg attgaacaac gtctggaagg
     8761 cgtcagcgcc gaagtagcga aagtccgcgc gcatatgccg gaaatcctgc aatggcagcg
     8821 tgaacgcctg gtcgcgaagc tggaagatgc tcaggttcag ttggaaaaca accgtctgga
     8881 gcaagagctg gtgatgatgg cgcagcgcat tgatgtggcg gaagagctgg atcgtctcga
     8941 agcgcacgtc aaagagactt acaacattct gaagaaaaaa gaggcggtag gtcgccgtct
     9001 ggacttcatg atgcaagaat ttaaccgtga gtcgaacacc ctggcctcta aatccatcaa
     9061 cgctgatgta actaactccg ctattgaatt aaaagtgttg atcgagcaaa tgcgcgagca
     9121 gatccagaat attgaataat tctggcgctc aatatgtcac agagtccgcc ttatgcgggc
     9181 tctcgcgttt atcggtagta cgtttttaat ttccggcgaa tagcgtcgat aaggcgtcgc
     9241 ttccactcta ccgtcgaagc ccgatactgc ataaaaatag cgccttccgc ctgctccccg
     9301 gcaagcggca ggacaaaaag accgcgctta tcggataaat tttcatacca ggggcgcggt
     9361 acaatcgcca ttagcggcgc cgactggaca gcaggcgcaa gttgactgta atcatgacaa
     9421 acaaacgcca acggacgttc aaacccggca cgagcctgct gcctgtccag ttcgttgttc
     9481 tcttttgtcc acggcaaaca gtaaatgtgt tgataatgct gcagatcagc aaaattcaac
     9541 gctgcggcat tctccagacg tgaacgcaat ggcgcgccat aaaccgcgat caaacgcgtc
     9601 gtccccaccc gctcgtaatg cagagcgctg acctgctttt gatggtcgcc aattgccagc
     9661 accaaatcaa ccgagctatc caacagttca tcacgccagg gtcggcgggc aaaaggaagg
     9721 cactcgatca ccgcctgatg aagatgacct ttctctgcga gaacgggcgt aagcagcgcg
     9781 ttcaatgcgg gaggaagtac cacccggaaa caacgggagc cgttctcttt atcgccaaac
     9841 agctcctcat taagcgaaac aaacacaggc gccaacttgt cacgcagcgc ctgcgcataa
     9901 ggcgtagcaa tctggcggtt cccctcccgt cgaaacaacg gatcgtttag cgcatcgcgc
     9961 aatctcatta gcgcatgact caccgcagaa ggcgacaaag ccagcttttg cgccgttttc
    10021 cccgtagagc tcgtctccag cagcacatac agtactttta acaggttcat atccatttgc
    10081 agcaagttca ttaaacgtct ctcttattga acctgactaa attactgcca ggtatactgc
    10141 gggcgcttca atcaggagaa cattatgaat cgctatgtat tattctttgt atgtatattt
    10201 tcaacatcag cacttcctgc catggcggca ttagatcctt cacaaccgtt atcacccgcg
    10261 cctccgttat cactgtttaa agcgtgggct aagcctatga agccgtttca aatcacagaa
    10321 ggcgtgtggt atgtcggtac ggaaaatctc tcttctattc tgctgaccac tccggcaggg
    10381 catattctta ttgatgcggg gctggatgaa agcgcaccgc aaattaaagc gaatattgaa
    10441 gcggcaggat ttcgcttcac tgacgtgcgc tatctgttga gcagccatgc gcggctggat
    10501 caagcggggg gcatggcacg tttgaaagcg tggagcggcg cacaattggt cgccagtcaa
    10561 cccaacgccg atcagatggc gaggggtgga cgacaggatt ttgcgcttgg cgatgcgctc
    10621 cccttcccgc tcgtcaccac tgataaaatt atccacaacc aggaaagcat cagcctcgga
    10681 ggggtaaccg tgacagcact attcacgcct ggacatctgc ccggctcaac ctcctggcgc
    10741 gtaacgctcc gcaacggcaa gacgctaatt tacgcagata gtctcgccac acctgactat
    10801 ctgctgatta acaacaaaaa ttaccctgac ctggttactg atattcagag cagctttaaa
    10861 acactggccg cccagcatgt tgatatcttt attgccaaca aaggtgaccg cttcgggcta
    10921 ctggagaaac gacagcaact tcgcaacggc gatacacagg cattctttga ttccaatggc
    10981 ttgcaacagt atgtggaacg ctcgcgtcag cgcttcatca cacaacttac cgcacagcag
    11041 ccacaatgaa atgactcacc ggcggcgcgt ccagggcgcc gttcaggtaa tttatctaag
    11101 tcaaaacaga aaaacctcgt atacaataaa ccacaaaaat gatgttcaat ttattgatat
    11161 ttataataaa taattattaa tcataaattt agaatcatta ctaaaattta ttaatcgtgt
    11221 aatgccttag aaaatctcaa tcgtgataca gcgcacaaat cgttaatctt cgcccccagt
    11281 aaattagggg gaaatcatgc tgttgcacgt tctttattta attggcatca ctgccgaggc
    11341 catgacgggc gcactcgctg cgggtcgtcg tcgcatggat acattcggcg taattattat
    11401 tgctaccgcc accgccattg gtggaggctc ggttcgcgac attctgctcg gtcactatcc
    11461 gctgggttgg gtgaagcatc ccgaatatgt cattattgtg gcgactgccg ccgtattgac
    11521 caccattgtt gctcccgtca tgccctattt acgcaagctt ttcctggtac ttgacgcgct
    11581 ggggttggtg gttttctcta ttattggcgc tcagatagcc cttgatatgg gcgaagggcc
    11641 aattatcgcc gtggtagccg ccgccactac cggcgtcttt ggcggcgtgc tccgcgatat
    11701 gttctgcaaa cgcattccac tggtgtttca aaaagagctg tatgccggca tttcgttcgc
    11761 ctcggcggtg ctctatattg cgctacaaca ttacgtcatg aatccggatg tcgtcgttat
    11821 ctctacgcta ctgtttggct ttacagcaag gttattagcg ctacgtctta aacttggcct
    11881 gccggtattt tattaccgtc atgaaggaca ctaagaccca aatccgggaa tatgctgagt
    11941 agccagccat ctgctcagcg cgttgatctg cggattattc cgccagtcga taactctccc
    12001 ggcacggcgc tcgcccgtcg ctggcaattg ccgccagtgt tgctctgttc gcattaataa
    12061 ctgctcccat gagcgatcac cgctggcctg taatgcggcc tgcgttaagg ggatatccat
    12121 cgccatgatc cagcgggtaa atgactgccg gcgcgccagg ttaaattgcc gccatatctg
    12181 ctcgcttttt cctttagcaa cgcctggcgt gttggctatt tgcgctgacg tcagggcaag
    12241 ccaggagaag atatgctcaa agcgatgcgt ctgatgcaaa gcccgccagc tagcttcacc
    12301 cattccgtcc agacccaacg ccgaccgtga ccccagccat accagcctgg agataaactg
    12361 ttcctgacac gttgccgacg cgtaaaagca ggtcagcgag ttgaaatggc tacctggcgg
    12421 cacaggctta ctccgctcac gactccgcca gacgacctca tcaagccgag gaatgccttg
    12481 cccggccaga ctcaccagga tctgatcgcc cggcgcaata tcccacgctt cccaacgctt
    12541 cacagaaccg atattgaccc gctgaacccg cttatcatcc aatataacgg ggacaagcga
    12601 cgctactacg gtaatcttgc cgcttttccc caccgagaac tgaatagcgc tcacttgcgc
    12661 gacctgcgct actggcggat atttccatgc tgccagccag tcgccctgcc cgggtcgcca
    12721 gtattgtgac gcgggttctt tagccatgcg tatcactacg ccatccgtca caaagggtaa
    12781 tgctgacgtc agccatgact ggcgcgcccg ctcgacctcg ctggcatctt ttaccgccag
    12841 agaatatttc ttcgtcagac tgaatccagc cttagcaagt tggcttaatc tttcgggcat
    12901 atttgccgga ccgtccggcc acgcccaaat aaaaataccc aacgaattta gcgcggaggc
    12961 gttatcctgg cgcattaaca ttcctgcggc tttcgagcgc gcattcatcc cgcccatccg
    13021 ttgctggata tgtccctcgc gctgtagaaa gatttcgccc tgcaacaccg cgttagctag
    13081 cgcgccttgt gttgtctgcg gtatagaggg gatcaggcga atttttggcg tccagtcctc
    13141 gccttgtagt ccgttacccc ggctaatggc cctggtcagt ttaccgtttt gataaaccag
    13201 cgttaccgct acgccatcca cttttggctg tacccaaagc tcgctgcgcc cgcgcatcca
    13261 ctgttctacg cctgtcggtc cgcgagttta cgtacgcccg tgtgcgcaac agggtgcatt
    13321 gttgtaccgt ttaacggcgg tgaaaccgga gtagatgaaa catcctgacc aacacagcgt
    13381 tgccactgaa ccagccttgc gctgagttgg tcgtacacac tatcgtcaac cgcgctaaca
    13441 ccttgtttcc agtagatgtc attccagtca gcgagctgtt gctgtaaacg ggtgatttct
    13501 tcagcggccc ttgctggcgg ccaggccggg caaagcgccc cactctgcga atgccacaat
    13561 aaaattcccc acgccatact tttccataat ctcatcacaa cctcctgcgc acattgcccg
    13621 gcaggtatag cgctttagtg aataaaaacc gacaggtaaa aatgcaccat ccgagccgct
    13681 ttccagattt tttggtgggt tgctgcaacg acgcgataaa agcggaaaaa gggacgcaaa
    13741 atgcaataat ctggcgcaaa aagtgtgaca aagactacgt cgcataacgg cgatgtgtat
    13801 aataagcccg tatcaaggct ctatttcgat aatcacagac gtaagatact catggctcaa
    13861 ggtacgcttt atattgtttc tgcccccagt ggcgcgggta aatccagcct gattcaggct
    13921 ttattaaaaa cccaaccgtt gtacgacact caggtttccg tttcacatac cacgcgcgcg
    13981 ccgcgtccgg gtgaagtgca cggtgagcac tatttctttg taaatcatga tgagtttaaa
    14041 accatgattg gcagggaggc gtttctggag cacgcggaag tgtttggcaa ttactacggc
    14101 acttcgcgcg aaaccattga gcaagtgctg gcaactggcg ttgatgtttt tctggatatc
    14161 gactggcagg gcgcccagca aattcgcgaa aagatgccgc aagcacgcag catttttatt
    14221 ttgccgccat caaagatcga attggatcgc cgtttacgcg gccgcgggca agatagcgaa
    14281 gaagtcattg ccaaacgaat ggcgcaagcg gttgcagaaa tgagccatta cgccgaatat
    14341 gattatctta ttgtgaatga cgactttgat accgcgttaa gcgacttgaa aaccatcatt
    14401 cgcgctgaac gtctgcgtat gagccgccaa aagcagcgtc atgacgcttt aatcagcaaa
    14461 ttgttggcag actgaaccca ctttcagtat catgcccagt catttcttca cctgtggagc
    14521 attttaagta tggcacgcgt aactgttcag gacgctgtag agaaaattgg taaccgtttt
    14581 gacctggtac tggtcgccgc gcgtcgcgct cgtcagatgc aggtaggcgg aaaggatccg
    14641 ctggtaccgg aagaaaacga taaaactacc gttatcgcgc tgcgcgaaat cgaagaaggt
    14701 ctgattaaca accagatcct cgacgtccgc gagcgccagg aacagcaaga gcaggaagcc
    14761 gctgaattac aagccgttac cgctattgct gaaggtcgtc gttaatcaca aagcgggtcg
    14821 cccttgtatc tgtttgaaag cctgaatcaa ctgattcaaa cctacctgcc ggaagaccag
    14881 attaagcgtc ttcggcaggc gtatctcgtt gcacgtgacg ctcacgaggg ccagacacgt
    14941 tcaagcggtg aaccctatat cacgcacccg gtagcggtgg cctgtattct ggccgagatg
    15001 aaactcgact acgaaacgct gatggccgct ctgctgcatg acgtgattga agataccccc
    15061 gccacctatc aggacatgga acagcttttc ggtaaaagcg ttgccgagct ggtagagggg
    15121 gtgtcgaaac ttgataagct caagttccgc gataagaaag aggcgcaggc cgaaaacttt
    15181 cgcaaaatga ttatggcgat ggtgcaggat atccgcgtca tcctcattaa gcttgctgac
    15241 cgtacccata acatgcgcac gctgggctcg ttacgcccgg ataaacgtcg tcgtattgcc
    15301 cgtgaaaccc tcgaaatcta cagcccgctg gcgcaccgtt taggtattca tcatattaaa
    15361 accgagctgg aagagctggg ttttgaagcg ctgtatccca atcgttaccg cgtcattaaa
    15421 gaagtggtaa gagcggcgcg cggcaaccgt aaagagatga tccaaaaaat cctctctgaa
    15481 atcgaaggac gtttgcaaga ggcgggaatt ccgtgtcgcg ttagcggtcg cgaaaaacat
    15541 ctttactcga tctactgcaa aatggtgctc aaagagcagc gttttcactc gatcatggac
    15601 atttacgctt tccgcgtgat cgttcatgac tccgatacct gctatcgcgt actcggccag
    15661 atgcacagtc tctataagcc gcgtccggga cgcgtgaaag actatatcgc cattcccaaa
    15721 gcgaacggct atcagtcttt gcacacctcg atgatcggcc cgcacggcgt tcctgttgaa
    15781 gtccagatcc gtaccgaaga catggatcag atggcggaaa tgggggttgc ggcgcactgg
    15841 gcgtataaag agcacggtga gaccagcacc acggcgcaga tccgcgccca gcgctggatg
    15901 cagagcctgc tggagctaca acagagcgcc ggtagttcgt ttgaatttat cgaaagcgta
    15961 aaatccgatc tcttcccgga tgagatttac gttttcaccc cggaagggcg cattgtcgaa
    16021 ctgcccgctg gcgctacgcc ggtggatttt gcctatgcag tgcataccga catcggccac
    16081 gcctgcgtcg gcgcgcgtgt cgaccggcag ccttatccgc tgtcacagcc gcttagcagc
    16141 ggtcagaccg tcgaaattat taccgcgccg ggcgcgcgtc ccaacgccgc ctggctgaac
    16201 tttgtcgtca gctctaaagc gcgcgctaaa attcgtcagt tgctgaaaaa cctcaaacgt
    16261 gatgactccg taagcctggg ccgtcgtctg cttaaccatg ctttaggcgg cagtcgtaag
    16321 ctggcggaaa ttccgcagga aaatattcag cgcgaattgg atcgtatgaa gctggcaacg
    16381 cttgacgatc tgctggcgga aatcggtctc ggcaacgcga tgagcgtagt ggtcgcgaaa
    16441 aatctgcagc aaggcgaagc cgtggtgccg accgttgcgc aatcgaatca cggccacctg
    16501 ccgattaaag gcgcggatgg cgtgcttatc acctttgcga agtgttgtcg tccgatccca
    16561 ggcgacccga tcatcgctca cgtcagccca ggtaaaggac tggtgatcca ccatgaatcc
    16621 tgccgtaata tccgtggata ccagaaagag ccagagaaat ttatggcggt cgaatgggac
    16681 aaagagacgg agcaggaatt cattaccgaa atcaaggtgg aaatgtttaa ccatcagggc
    16741 gcgctggcta acctgacggc ggcgattaat accaccacct ccaatattca aagcctgaat
    16801 actgaagaaa aagatggtcg cgtctatagt acctttattc gccttaccgc acgcgatcgc
    16861 gtacatctgg cgaatatcat gcgcaaaatc cgcgtgatgc cagacgttat taaagtcacc
    16921 cgtaaccgaa actagcgcta tgaatccaaa acgttatgcg cgtatatgcg aaatgctcgc
    16981 caggcgtcag cctgatctca cggtctgcat ggagcaagtc cacaaacctc ataacgtttc
    17041 tgcaatcatt cgtaccgcag atgccgttgg cgtccatgaa gtccatgcca tctggcctgg
    17101 tagccggatg cgcaccatgg cttccgcggc ggcgggcagc aacagttggg tacaggtgaa
    17161 aactcaccgt accattgacg atgcggtagc ccatttgaaa ggacggggaa tgcagattct
    17221 ggccacccat ctttctgata aggccgtaga ctttcgcgag attgattaca cgcgcccgac
    17281 ctgtattctg atgggtcagg agaaaaccgg tattactcag gaagcattag acctggcgga
    17341 tcgggacatc atcattccga tgatcggcat ggtacagtcg ctgaacgttt ccgtcgcctc
    17401 cgcgctcatt ctttatgaag cccagcgcca gcgacagaac gcgggcatgt atctgcgtga
    17461 aaatagcatg ttgccggaag atgaacagca gcgcctgctg tttgagggtg gttatccggt
    17521 gctggcgaaa gtcgctaaac gtaaaggtct gccttatcct cgcgtcaatc agcagggcga
    17581 aatcgacgcc gatgctgact ggtgggcgac gatgcaggcg gcagggtaat caccatgtca
    17641 ggccgcttgt tagacgctgt tccgctcaat tccctgacag gcgtcggcgc agcgcaaagc
    17701 agtaaactgg cgaaaattgg cctgcatacc gtccaggatt tactattaca tcttcctctg
    17761 cgttacgaag accgtaccca tctctacccc attggcgaac tgctgcctgg catctacgcc
    17821 accgttgaag gtgaagtgct gaactgcaat atcactttcg gcggtcgccg gatgatgacc
    17881 tgccagatta gcgacggttc cggcattctt accatgcgct ttttcaattt taacgcggcg
    17941 atgaaaaaca gcctggcgac ggggcggcgt gtgctggcct acggggaagc gaagcgcggc
    18001 aagtatggcg cagagatgat ccatccggaa tatcgcctgc agggcgatct cagcacgccg
    18061 gaacttcagg aaacgctcac ccccgtctat ccgaccaccg agggcgtgaa gcaagcgaca
    18121 ctgcgcaagc ttaccgatca ggcgctggag ttgctcgaca cctgcgccat tgccgaacta
    18181 ctgccgccgg aactggcgca gggtatgatg agcctgccgg aagcgctacg taccttgcat
    18241 cgcccgccgc cgacactcca gctcgccgat ttagaaaccg gcaaacaccc ggcgcagcgg
    18301 cggcttattc ttgaagagct actggcgcat aacctcagta tgctggcgct tcgcgcaggc
    18361 gcgcagcgct accacactca gccgctaagt accaacaaca tattgaaaga caagctgctg
    18421 gcgtcgttgc cgtttaaacc caccagcgcg caggcgcggg tggtagcaga gatcgaacgt
    18481 gatatggcgc tggatgtgcc gatgatgcgt ctggttcagg gcgacgtcgg ctcagggaaa
    18541 acgctggttg cggcgcttgc cgccttgcgc gctattgccc acggtaagca ggtcgcgttg
    18601 atggcaccga ccgaactgct ggctgaacag cacgcaaata atttccgcaa ctggttcgaa
    18661 ccgttgggcg ttgaagtggg ttggctggcg ggtaagcaaa aaggtaaagc gcgtcaggcg
    18721 cagcaagagg ctattgccag cggtcaggtg cagatgattg tcggcaccca cgctatcttt
    18781 caggaacagg tgcagttcaa cggcctggcg ctggtcatta tcgatgagca gcaccgcttt
    18841 ggcgtccacc agcggctggc attgtgggaa aaaggccagc agcagggctt tcatccgcat
    18901 cagttgatta tgaccgcaac gcccataccg cgcaccctgg cgatgactgc ctacgccgat
    18961 ctcgatacct cggtgattga cgagctaccg ccgggccgta cccctgtcac taccgttgcg
    19021 attccggata cccgtcgcca tgaaatcatt gatcgtgtgc gcaacgcctg cacaaccgaa
    19081 ggccgtcagg cctactgggt ctgtacgctg attgaagagt ccgacctgct ggaagcgcag
    19141 gcggcggaag ccacctggga ggagctcaag ctggcgttac cggagttgaa tatcggcctg
    19201 gtacacggcc gcatgaagcc cgccgaaaaa caggcggtga tgcaggcctt taagcagggt
    19261 gaactgcatc tgctggtcgc cacaacggtg attgaggtgg gggtcgatgt tcctaacgcc
    19321 agcctgatga ttattgaaaa cccggagcgg ctgggcctgg cgcaattaca ccagctcaga
    19381 gggcgcgttg gccgtggcgc ggtcgcatcg cactgcgtgc tgctctataa atcgccgctg
    19441 tcgaaaacgg cgcagaagcg tttacaggta ttgcgcgaca gcaacgacgg ctttgtgatt
    19501 gcacaaaaag atttagagat tcgcggcccg ggggaattac tgggcacgcg ccagacgggt
    19561 aacgccgaat ttaaagtagc tgatttgctg cgcgatcaag ccatgattcc cgaagttcag
    19621 cgtattgccc gtcatattca cgaacgttat ccgcagcagg cacaagcgct gattgagcgc
    19681 tggatgccgg aaaccgaacg ttattctaac gcctagtgag cacggcggct ttaatgccgc
    19741 cgtacaaacc cttattgcgc gaaaatcggt aacatcaagt acagcttaat caccagcgca
    19801 ttgacgatat cgataaagaa cgcgccgacc attggcacca ccaggaacgc catatgcgag
    19861 gggccaaaac ggtcggtaat cgcctgcata ttagcaatgg cggtcggcgt tgcgcccagg
    19921 ccaaaaccac agtgacccgc cgccagcacc gccgcatcat agtttttccc catcatgcgc
    19981 caggtgacga agatcgcgta cagcgccatg aagatggtct gtaccaccag aatcgccagc
    20041 atcggcagcg ccagtgacgc cagttcccac agcttcaggc tcatcagcgc cattgctagg
    20101 aacagtgaca aactcacgtt ccccagcacc gaaacagcac gctcaaatac gcgataaaaa
    20161 cccaccagcg ccaggccatt gctgaggatc accccaacaa atagcacaca aacgaagacc
    20221 ggcagttcaa gcaccgttcc cgccagtagc tgcgctacga ttttgcccac ggtcagacag
    20281 atagcaatca gggcgatagt ttcgattagc accagagagg tgatcatacg acccacatcc
    20341 ggcttttcaa aggctgtcgg cacggcctga tcgtcaggca ttccatccgg cgtggtggag
    20401 tgtttcacca gataacgcgc taccgggccg ccaatcaacc cgcccagcac caggccaaag
    20461 gttgcacatg ccatcgcaac ttcggtggca ctggcaaaac cataacgttc gacaaacagt
    20521 ttactccacg ccgcgccggt accgtgtccg ccggacagcg taattgaccc ggcaatcagc
    20581 cccattaacg ggtccagccc caacagactc gccatgccga taccgatggc attctgcatc
    20641 agcagtaatc cgaccacgac gaccaggaag acgccaacaa cgcgtccccc cttgcgcagg
    20701 ctggcaaggt tagcgttaag gccgatcgtc gcgaaaaacg ccagcatcaa cggatcgcgc
    20761 agggtcatat caaagttgac ctcccaaccg acgctttttt tcagcaccag cagagcaacc
    20821 gcgaccagta gcccccccgc caccggctcc ggaatcgtat atttcttcag taaggagaca
    20881 gactggacca gcttgcgacc cagtagcagc accagcgtgg cggcgacaag ggtcgataag
    20941 gtatcgagtt caaacattta aagctcctgt agtgcgctgt gacatgtgcg cacaaatcat
    21001 ttcctgagtc agttttttag ctctttgcga gtcttcggca tggattttaa gcagaaaaag
    21061 gcaaaaagtt atataaaagg tgcatttatc ttttttaaat attaagaata ttcgctcgca
    21121 atcgtttgct tttaccacct ggtcagataa aatcaccgct tttccaccac gagaatgtcc
    21181 ctgatgtccg ttaacgccat cgagccggca gatgcgcaac cggttgcgca gacgcaaaac
    21241 agcgaattaa tttaccgtct tgaagatcgc ccgccgctcc ctcaaaccct ttttgccgct
    21301 tgtcagcatc tgctggccat gtttgtcgcg gtaattacgc cagcgctgtt aatctgccag
    21361 gcgttgggtt taccggcgca ggatactcag cacattatca gcatgtcgct gttcgcctcc
    21421 ggcgtagcct ctattattca aatcaaagcg tgggggccgg taggatcggg gctgttatcc
    21481 atccagggaa ccagttttaa ctttgtcgcc ccgctgatta tgggcggtac cgcgctgaaa
    21541 accggcggcg cggatgtccc gacgatgatg gcggcgctgt tcggcacgct gatgctggca
    21601 agctgcaccg agatggtgct ttctcgcatt ctacatctgg cgcgccggat tatcacgccg
    21661 ttagtctccg gcgtcgtggt aatgattatt ggcctgtcgc tgattcaggt ggggctaact
    21721 tccatcggcg gcggctatgc cgccatgagc gacaacacct ttggcgcacc gaaaaacctg
    21781 ttactggccg gcgtcgtcct ggccattatc atcctgctga atcggcaacg taatccctac
    21841 ctgcgcgtgg cttctttggt tattgccatg gcggcaggct atcttttggc ctggtttatg
    21901 ggcatgttgc ctgagaataa cgcgccggtc tcgcaggaca tcctgatggt gccgaccccg
    21961 ctgtattatg gtctgggcat tgactggaac ctgttactgc cgttgatgct ggtctttatg
    22021 attacgtcgc tggagaccat cggagacatc accgccacct ctgatgtctc cgagcagccg
    22081 gtatccggcc ccttgtacat gaaacggcta aagggcggcg tactggctaa cggcctgaac
    22141 tcatttgttt cagcggtatt taatacgttc ccgaattcct gtttcggtca gaacaacggc
    22201 gtcattcagt tgaccggcgt cgccagtcgc tatgtgggat ttgtcgtcgc gctgatgctg
    22261 attgtgctcg gcctgttccc ggcggtaagc ggttttgtgc aacatatccc ggaaccggtg
    22321 ctcggcggcg ccacgttggt gatgttcggc accattgccg cctccggggt gcgtattgtc
    22381 tcgcgtgagc cgctgaaccg ccgcgcgatt ctgattatcg ccctgtcgct ggccgtgggt
    22441 cttggcgtct cgcaacagcc gcagatcctg cagttcgcgc cggaatgggt gaaaaatctg
    22501 ctctcatccg gaattgccgc tggcggcatc acggctatcg tgctgaacct gattctcccg
    22561 ccggaaaaac cgtaaaaacc ctgcggcggc gacacgattc gccgctgctg taacgctctt
    22621 tcaccattcc tgtcttgagg attgcacgca aatcgtgcat aaatccccta tgtgcatttc
    22681 acgggatgga agaccatgaa attgattggg aggttgcttc tctacgtgct gatcgcctgt
    22741 ttagtggtga ttttcggctt ttattttctg ctgcaaacgc gctggggcgc agatcatgtc
    22801 agcaactggg tatcagagaa cagcggctat cacctcacat tcgacgtgat ggatcatcgt
    22861 ttttccgccc catcccatct tttactggag aatgtgacct ttggtcgtga tggtcagcct
    22921 gctaccctgg tcgcgaaaac cgtagatatc ggtctgagca ttcgccagtt aaccgcgccg
    22981 ctgcatgtcg acacgattct gttacaggac ggcacgctga atatttcagt gcaaaccgcc
    23041 cctttcccgt ttgaggccga ccgcctgcaa cttcgcaata tggcgctcaa tagtcccggc
    23101 agcgaatggc ggttgagcgc ccagcgcgtt aacggcggcg ttatgccctg gcgccccgaa
    23161 gccggtcggg tattgggcaa taaagcccag atccaactga gcgccggttc gctgacgtta
    23221 aacgacgttc ccgccacgaa tgtgcttatt gaaggcagta ttgaccatga tcagatgatg
    23281 ttaaacaccg tcggcgccga tatggcgcgc ggagcgttaa ccggcgtcgc ccggcgtaac
    23341 gctgatggta gttgggtcgt tgaaaatctg cggctgaatg atatccggtt acaaagcgat
    23401 aaatccctga gcgagttttt cgcgccgctt actacggttc catctttgca gattggtcgt
    23461 cttgaagtga cggactccag cctgcaagga ccagactggg cagtcaccga tcttgacctg
    23521 agtttgcgca atctgactct gcgcaaagaa gactggcaaa gtcaggaagg taaattatcg
    23581 atgaatgcca gcgagtttat ttacggctcg ctgcacttgc tcgatccaat cctgaacgcc
    23641 gaattttcac cacagggcgt tgcgctacgc cagttcacca cccgctggga aggcggtatg
    23701 gtcagaacct ccggcgcctg gttacgcgag agcaaagcgc tgattctgga cgataccgct
    23761 atcgccgggc tggagtatac gctgccggaa aactggaagc agttatggat gaagccgttg
    23821 cccgactggc tgaacagcct gacgctgaaa aaattcagcg ccagccgcaa tctggtgatc
    23881 gatatcgacc cgaccttccc gtggcaaatc accgctctgg acggctacgg cgcaaacctg
    23941 gagctggtac aacatcatca atggggcgtc tggagcggca atgcgaccct caacgccgca
    24001 gcggcaacct ttaaccgtgt ggacgtgcgc cgcccgtcgc tgtcgttgac ggcgaatgcc
    24061 agcacggtca acatcagtga tctgagcgcg tttactgaaa aagggatact ggaagccact
    24121 gccagcgtat cacaacagcc gcagcgtcag acgcaaatca gcctgaacgg acgcggcgta
    24181 ccaatggatg tgctacaaca gtggggctgg ccggcattac cgattgctgg cgatggcaat
    24241 attcagttca cggccagcgg caatattcag gccgatgcgc cgttgaaacc gacggtaaac
    24301 gggcaattac acgcggtcaa cgcacaaaag cagcagataa tgcaaacgat gcaagcgggt
    24361 gtggtgtccg gcggggaagt tacgtcaacg gagccagcgc tgtaattgag ggcttgcccg
    24421 gtggcgctgg cgcttaccgg gcttacggtt cttgctcatt tgtaggccgg ataagcgcag
    24481 ctcacggcgc catccggcga ttcagattta aagcgtaatc accacttcat ttccctgcgg
    24541 ggtgaccact acgcccagtt cacttcccgc atatgagccg catttggtac cgctaatctg
    24601 cgtaatatta cgcagacaca gcgtccagtt gcgcgcctcg ccttcgccgc tcaccgtaat
    24661 ggtattgcct gtgcgtttcg cctgcagcgt aaagattgtc gaaccatccg tagcagggac
    24721 ttcgcagacc gcttcgcaac cgtcatccag atggaataac tggaaggccg taccctcatg
    24781 ccaggcgtaa tcgggcttct ggctattgtt gcccagcgcc agtagtgtat tgtcacgcac
    24841 gtacactggc aggctcagga agtcatgctg ctgtttatgc cagcggctgc cctgcacttc
    24901 atcgttgcgc cacaagtgcg tccagcggcc ttctggcagg tagaactcca cgtcgcccgc
    24961 ttcactaaat accggcgcta ccatgaccgc atctcccagc atgtactggc gatcaagata
    25021 atcacacgcc ggatcgtccg gaaactccag catcatcgcc cgcatcattg gcgtaccggc
    25081 ttcgttggcg cgcgccgctt cccgatacag atacggcatc atccggcact tctgttcggt
    25141 gaagaagcgc accacgtcac aggactcgtc gtcataggcc cacggaaccc ggtaggattt
    25201 gctaccgtgc aggcggctgt ggctggagag caagccgaat gcgcaccaac gcttgtagac
    25261 atgcgccggc gcggtattct cgaatccgcc aatatcatgg ctccagaagc caaaccctga
    25321 caggccgatg gacagcccgc cgcgcaggct ttccgccatc gattcgtaat tggcgtagca
    25381 gtcgccgccc cagtgcaccg ggaactgttg cgcgcccacc gaggcggaac gggcgaacaa
    25441 caccgcctct tcaacgccca cggtctcttt cagcacgttc cacaccagtt cgttgtagat
    25501 gtaggcataa tggttgtgca ttttctgtgg atctgaacca tcaaaccact gcacatccgt
    25561 tggaatgcgt tcgccgaagt cagttttgaa gcagtccact cccatcttca ccaggccctt
    25621 cagcttgtcg gcataccatt cgcaggcttg cgggttggtg aagtcgtaaa tcgccagtcc
    25681 cggctgccat ttatcccact gccacaagga gccgtccggg cgtttaagta aatacccttt
    25741 ctctttcagc tcctggaaaa ccggggattt ctggccgatg taggggttaa tccacacgca
    25801 gactttcagc cctttcgctt tcaggcggtg aatcatccct ttcggatcgg ggaaagtcac
    25861 cgggtcccat tcaaaatcgc accactggaa ggccttcatc cagaaacagt cgaagtggaa
    25921 gacatgcagc ggcagattgc gctcggccat accgtcgata aagcggttaa cggtcgcttc
    25981 gtcgtagttg gtggtaaatg aggtggtcag ccacaggcca aacgaccagg cgggcggcag
    26041 cgccggacga cccgtaaatt gggtatagcg gttcagcacg tctttcggag tcgggccgtc
    26101 gatgacgaag tattccagat actcgctctc gacgctgaac tggactttgg agactttctc
    26161 ggagccaatt tcaaacgaca cgcactgcgg atgattcacc agcacaccgt agccacggtt
    26221 ggtgatatag aacgggatat tcttgtacga ttgctcggtg ctggtgccgc cgtcacggtt
    26281 ccaggtctcc accgtctgac cgttacgcac cagcgcggta aagcgctcgc ccagcccgta
    26341 gacggtttcg cccacgccga gatccagacg ctcgaacatg tagttgcgcc cgctgttggt
    26401 atcctgcaca tagccgttat tcttcaactg gctaccggtg atacgtacac cgttgcgcag
    26461 aaaatccagt gaccagagct cgcctttggt gacacacacg ctcaggctgc cgctcttgag
    26521 ttcggcaaat tcggcgttgt tctgcatctc cacgttgata tcttgcaaga cattgagcgg
    26581 ataatgtggg ccgttatcca aagcgccctg gaagtgttcc atccgtacac ctatcactcc
    26641 ttcctgtggc gagaaaaagc gcagggtaaa caacggggta tccagttgcc aggttcgttc
    26701 gcggacatcg cgcggcgcgg catagaccac catctcattc ccgtgctgtt caacgtcgaa
    26761 cacctgaacc gggtgaatca aattaaggcc aggctggatc agccagtttc cgtcgctaat
    26821 tttcatagtc tgttccttta gttttgcaat tctttatggg taaattcttg ttcgttgcgg
    26881 tgtgcgccct gcgccagttg ttccagaatg gttttcagga acgggctttt cagggtgtag
    26941 tagcgtttag cgatcgcggc gctcagcaga taacagatgg ccgggacgat agtgaacaga
    27001 gcgatgatga tgctgatcgt ggcgctgttt tgcgttttcg ccgccgcgtc gtaaccgccg
    27061 cctgccagca tccagccaat cagcgccccg ccgagggcaa gacccagttt cagcacgaac
    27121 aacgtgccgg caaaactgat ccccgtcagg cgtttgccgt tacaccattc gccgtagtcg
    27181 acggtgtcag acatcatcac ccactggata ggcgtgacta actggtgcaa tacgccaatc
    27241 acgaagataa agacgaacat agcgatcgtg gcgtgcatcg gtacgaagaa catcgccacg
    27301 ctgattactg cgagtaaggc gttggtccac cagaaaacgc tcactttgca tttccagtcg
    27361 gtcaacggtt ttgccagcgc cgagccaatc aggttgccga cgcaataggt ggtgaggaag
    27421 gcgacaaaca cgcccggttt gcccaatatc caggtgacgt aatacatcat cgccccgccg
    27481 cgcacgcata ccgccagaat attcaggatg gtgagcaggc cgactatgcg ccactggtcg
    27541 ttgtgccaga tatcacgcag gtcttcacgc atggaggtat gggtggcagg cgcttcaacg
    27601 cgctctttgg tggtaaaaaa gcagaacgcc agcatcagga acgccaccac cgagagcgcc
    27661 gcgatccccc cctggaagcc cagcgcctta ttctcgccgc caatcagttt caccagaggc
    27721 atcatcagta cggtagagag cattccgccc gccgttgcca gcacaaagcg ccaggattgc
    27781 agggagatac gctgcgttgg gtcattggtt attacaccac ccaacgcgca gtaagggatg
    27841 ttgaccacag tatacagaag ggtgagcaac gtgtaggtga tggcggcata aatcattttg
    27901 ccgttcagac tgagatccgg cgtgctataa gccagcacac aaacgatacc aaacggcaac
    27961 gcgccaaaca gcacccaggg tcggaatttg ccccagcgag agcgggtacg gtcggccaac
    28021 aggcccatgc aagggtcgga gatggcatca agcgcacgcg ccagtaaaaa catggtgccg
    28081 acaaaaccag cgggaatgcc gaaaatatcg gtatagaaga acatcatata taacatgacg
    28141 ttatcaaaga tgatgtggct ggcggcatcg cccataccat agccaatctt ctccttaacg
    28201 gagagaattt cacttttcat tacgcatcct taacgctcac aacgctcact gataccggtt
    28261 acagtttttg taaaccttcc ctgcgagcgt gaatattccg ttatttggtt atcaaattac
    28321 gattcttgtt ttctgtgatc agggtagcgc caaaaagtgt gatgaaatgt aactaatgga
    28381 ttttatgggg gtttatatga aaccgatcat ggcagaagga aagggaagtt aaaaaagcac
    28441 gggaggggat gtggaaacgc caggaagtag ctataatgcg cgcgcctcca tgtagcaatc
    28501 gaggcgcgga agatcgtcgt ctccggtgag gcggctggac ttcaaatcca gttggggccg
    28561 ccagcggtcc cgggcaggtt cgactcctgt gatcttccgc caaaatcctt ctctcatgcc
    28621 caccattcgt cctctatttc gggacaaagt atttgcttat tattaagact agttcttgca
    28681 tataatacga aaggaaaggt ggagagagaa agtggaatat tattttatta atcaccattt
    28741 accgattgct aaaaccgaac gtccatttat tgtgggatat cgtccgcaaa gaagggataa
    28801 aagtacgcca ggactaacgc gggcgggact taactaatca ccaaacgagc ttgtgggtca
    28861 tacttacaga ctcatccttt ctcaaaagag ataacgctta ccagaccaaa attatgagat
    28921 caacgtatag agccatccgg ataaagatac atgcctccct ccagatacac gggttctcct
    28981 tcttctaccg ctaaattatg atatagcgat tgcatttcat catctgcact ttcttcctgt
    29041 tggttttcaa cccgataata ggtatctaca tcatagttct
//
LOCUS       DAJVSD010000027        28897 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.027, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000027 DAJVSD010000000
VERSION     DAJVSD010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 28897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28897
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.027"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            100..2712
                     /gene="pepN"
                     /locus_tag="OQP62_001019"
     CDS             100..2712
                     /gene="pepN"
                     /locus_tag="OQP62_001019"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000193787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HCS1720630.1"
                     /translation="MTQQPQAKYRHDYRAPDYQITDIELTFDLDAEKTVVTAISQAVR
                     HGAPDAPLRLDGEDLTLVSIHVNDAPWTAYKEEEGALIISDLPERFTLRIVNEISPAA
                     NTALEGLYQSGDALCTQCEAEGFRHITWYLDRPDVLARFTTKIIADKSKYPFLLSNGN
                     RVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRG
                     NLDRAPWAMTSLKNSMKWDETRFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYV
                     LARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL
                     GSRAVNRISNVRTMRGLQFAEDASPMAHPIRPDKVIEMNNFYTLTVYEKGAEVIRMIH
                     TLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQSGTPIVTV
                     KDDYNPETEQYTLTISQRTPATADQAEKQPLHIPFAIELYDNEGNVIPLQKGGHPVNA
                     VLNVTQAEQTFTFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWD
                     AAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDEKIDPALAAEILTLPSANE
                     IAELFEVIDPIAIAQVREALTRTLAAELADEFLAIYNANHLDEYRVDHGDIGKRTLRN
                     ACLRFLTFGETELANTLVSKQYRDANNMTDALAALSAAVAAQLPCRDTLMQEYDDKWH
                     QDGLVMDKWFILQSTSPAENVLETVRSLLKHRSFSMSNPNRIRSLIGAFAGSNPAAFH
                     AQDGSGYQFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDDKRQEKMRAALEQLKGLEN
                     LSGDLYEKITKALA"
     gene            2920..3930
                     /gene="pyrD"
                     /locus_tag="OQP62_001020"
     CDS             2920..3930
                     /gene="pyrD"
                     /locus_tag="OQP62_001020"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HCS1720631.1"
                     /translation="MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPLEALVRQKVPT
                     KPVTCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSLEIGTVTPRPQPGNDKPRLFR
                     LVDAEGLINRMGFNNLGVDNLVENVKKAHFDGILGINIGKNKDTPVENGKDDYLICME
                     KVYAYAGYIAINISSPNTPGLRTLQYGDALDDLLTAIKNKQNDLQVIHHKYVPVAVKI
                     APDLCEEELIQVADSLLRHNIDGVIATNTTLDRSLVQGMKNCQQTGGLSGRPLQLKST
                     EIIRRLSLELKGQLPIIGVGGIDSVIAAREKIAAGATLVQIYSGFIFKGPPLIKEIVT
                     HI"
     gene            4096..4638
                     /gene="zapC"
                     /locus_tag="OQP62_001021"
     CDS             4096..4638
                     /gene="zapC"
                     /locus_tag="OQP62_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapC"
                     /protein_id="HCS1720632.1"
                     /translation="MRIKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFSRKMLTPDAF
                     CPTGFCVDDAALYFSFEEKCRDFELTKEQRAELVLNALVAIRYLKPQMPKSWHFVAHG
                     EMWTPGTGDAASVWLSDTAEQVNLLVVEPGENAALCLLAQPGVVIAGRTMQLGDAIKI
                     MNDRLKPQVHCHSFSLEQAV"
     gene            complement(4635..5744)
                     /locus_tag="OQP62_001022"
     CDS             complement(4635..5744)
                     /locus_tag="OQP62_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbX family protein"
                     /protein_id="HCS1720633.1"
                     /translation="MATLSRLFIHPVKSMRGIGLTHALADISGLAFDRIFMVTESDGT
                     FITARQFPQMVRFTPSPLHDGLHLTAPDGSSALVRFTDFTPQDAPTEVWGNHFTARVA
                     PTAINQWLSGFFSRDVQLCWVGPQLTRRVKRHNAVPLGFADGYPYLLTNEASLRDLQQ
                     RCPAGVQMEQFRPNLVVSGVAAWEEDSWKVLRIGDVIFDVVKPCSRCIFTTVSPEKGQ
                     KHPSGEPLATLQAFRTAQDNGDVDFGQNLIARNSGVIRVGDEVEILATAPAKAYGATT
                     LDDSVTPEKHPDGSVTIDWQGQTFCGNNQQVLLEQLENQGIRIPYSCRAGICGCCRIR
                     LLEGEVSPLKKSAMGDDGTILSCSCVPKTALRLEN"
     gene            5843..7951
                     /gene="rlmKL"
                     /locus_tag="OQP62_001023"
     CDS             5843..7951
                     /gene="rlmKL"
                     /locus_tag="OQP62_001023"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HCS1720634.1"
                     /translation="MNSLFASTARGLEELLKIELEKLGAVGCQVVQGGVHFQGDTRLI
                     YQSLMWSRLASRIILPMGECKVYSDLDLYFGVQAINWTEIFNPGATFAVHFSGLNDTI
                     RNSQYGAMKVKDAIVDAFTRKNLPRPNVDRESPDLRINVWLNKETASIALDLSGDGLH
                     LRGYRDRTGLAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMWATDRAPGL
                     HRGHWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIERARSNAR
                     RAGIGELITFEVKDVAQLSNPLPKGPYGTVISNPPYGERLDSDPALIALHSLLGRTMK
                     NQFGGWNLSLFSASPDLLGSLQLRADKQFKAKNGPLDCVQKNYHIAETTADSKPATVA
                     EDYANRLRKNLKKLEKWARQEGIECYRLYDADLPEYNVAVDRYGDWAVIQEYAPPKTV
                     DAQKARQRLFDIIAATLSVLGIPPNKLVLKTRERQKGKNQYQKMSEKGEFLEVSEYNA
                     RLWVNLTDYLDTGLFLDHRIARRMLGEMSKGKDFLNLFSYTGSASVHAGLGGARNTTT
                     VDMSRTYLEWAERNLRLNGLSGRAHRLIQADCLGWLREANEQFDLIFIDPPTFSNSKR
                     MEESFDVQRDHVALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELGLTAQEITQKT
                     LSPDFARNRQIHNCWLIRAA"
     gene            7964..9871
                     /locus_tag="OQP62_001024"
     CDS             7964..9871
                     /locus_tag="OQP62_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000053132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1720635.1"
                     /translation="MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKST
                     LMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNIAGSVYDFVAEGIEEQAEYLKRYH
                     EISRLVMTDPSEKNLNEMARVQEQLDHHNLWQLENRINEVLAQLGLDPNAALSSLSGG
                     WLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRN
                     MATRIVDLDRGKLVTYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKA
                     RRTRNEGRVRALKAMRRERSERREVMGTAKMQVEEATRSGKIVFEMENVDYQVEGKQL
                     VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRA
                     ELDPEKTVMDNLAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRALSGGERNRLL
                     LARLFLKPSNLLILDEPTNDLDVETLELLEELIDGYQGTVLLVSHDRQFVDNTVTECW
                     IFEGGGKIGRYIGGYHDARAQQEQHLATKQPMTKKNEEVIAPKAEIVKRGSSKLSYKL
                     QRELEQLPGQLEDLEAKLEALQAQVADAAFFSQPHEQTQKVLADLSQAEQELEQAFER
                     WEYLEGLKNGA"
     gene            9886..11139
                     /gene="pqiA"
                     /locus_tag="OQP62_001025"
     CDS             9886..11139
                     /gene="pqiA"
                     /locus_tag="OQP62_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiA"
                     /protein_id="HCS1720636.1"
                     /translation="MCEHHHAAKHILCPQCDMLVALPRLSHGQKAACPRCGATLTTEW
                     DAPRQRPTAYALAALFMLLLSNLFPFVNMNVAGVTSEVTLLEIPGVMFSEDYASLGTF
                     FLLFVQLVPAFCLVTILLLVNRASLPLSVKKTLARIFFLLKSWGMAEIFLAGVLVSFV
                     KLMAYGDIGIGSSFIPWCLFCLVQLRAFQCVDRRWLWDDIAPQPALAQPLTPGITGIR
                     QSLRSCACCTAILPAESLVCPRCHTKGYVRRKNSLQWTLALLFTSIMLYLPANILPIM
                     ITDLLGSKMPSTILAGVILLWSEGSYPVAAVIFLASIMVPTLKMIAIAWLCWDAKGHG
                     KRDSERMHFIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMNIYPAMGALMFALVVIM
                     TMFSAMTFDPRLSWDREYEPGHEES"
     gene            11144..12784
                     /gene="pqiB"
                     /locus_tag="OQP62_001026"
     CDS             11144..12784
                     /gene="pqiB"
                     /locus_tag="OQP62_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intermembrane transport protein PqiB"
                     /protein_id="HCS1720637.1"
                     /translation="MEPKKGEAKVQKVKNWSPVWIFPIVTALIGAWILFYHYSHQGPE
                     VTLITTNAEGIEGGKTTIKSRSVDVGVVESATLTDDLTHVQIKARLHSGMEKLLHKDS
                     VFWVVKPQVGREGISGLGTLLSGAYIELQPGSKGSQPESYQLLDSPPLAPPDAKGIRV
                     ILDSKKAGQLSPGDPVLFRGYRVGSVETSSFDPQKRTMSYQLFIKAPNDRLVTSNVRF
                     WKDSGIAVDLTSAGMRVEMGSLTTLFGGGVSFDVPEGLEQGQPVAEKTAFNLYDDQKS
                     IQDSLYTDHIDYLMFFKDSVRGLQPGAPLEFRGIRLGTVSKVPFFASNMRQVFNDDYR
                     IPVLVRIEPERLKAQLGENADVGAHLTELLKRGLRASLKTGNLVTGALYVDLDFYPKE
                     PPITGLREFDGYEIIPTVSSGLAQIQQRLVETLDKINNLPLNPMIEQATNTLSESQRT
                     MRRLQTTLDNMNKITSSQSMQQLPADMQTTLRELNRSMQGFQPGSAAYNKMVADMQRL
                     DQVLRELQPVLKTLNEKSNALVFEAKDKKDPEPKRAKQ"
     gene            12781..13344
                     /gene="pqiC"
                     /locus_tag="OQP62_001027"
     CDS             12781..13344
                     /gene="pqiC"
                     /locus_tag="OQP62_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HCS1720638.1"
                     /translation="MKKWLVVIMAFWLASCSSGGENKSYYQLPIAQSGVQSTASQGNR
                     LLWVEQVSVPDYLAGNGVVYQTSDVQYVIANNNLWASPLDQQLRNTLVANLSARLPGW
                     VVASQPLGTTQDTLNVTVTGFHGRYDGKVIVSGEWLLNHNGQLIKRPFHIEASQQKDG
                     YDEMVKVLASAWSQEAAAIADEIKRLP"
     gene            13598..13765
                     /gene="rmf"
                     /locus_tag="OQP62_001028"
     CDS             13598..13765
                     /gene="rmf"
                     /locus_tag="OQP62_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome modulation factor"
                     /protein_id="HCS1720639.1"
                     /translation="MRRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSYWLGGW
                     RQAMEDRAVMA"
     gene            complement(13865..14383)
                     /gene="fabA"
                     /locus_tag="OQP62_001029"
     CDS             complement(13865..14383)
                     /gene="fabA"
                     /locus_tag="OQP62_001029"
                     /EC_number="4.2.1.59"
                     /EC_number="5.3.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014915875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-hydroxydecanoyl-ACP
                     dehydratase/trans-2-decenoyl-ACP isomerase"
                     /protein_id="HCS1720640.1"
                     /translation="MVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMT
                     ETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEG
                     KGRALGVGEVKFTGQVLPTARKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTAHD
                     LKVGLFQDTSAF"
     gene            complement(14452..16212)
                     /locus_tag="OQP62_001030"
     CDS             complement(14452..16212)
                     /locus_tag="OQP62_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lon protease family protein"
                     /protein_id="HCS1720641.1"
                     /translation="MTITKLAWRDLVPDSESYQEIFAQPHATDENDTLLSDTQPRLQF
                     ALEQLIQPWASSSFMLTKAPEEQEYLTLLSDAVRALQTDAGQLTGGHYDVSGHTVHYR
                     AAQNAQDNFATVTQVVSADWVEAEQLFGCLRQYNGDITLQPGLVHQANGGVLIISLRT
                     LLAQPLLWMRLKAIVSRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQE
                     MEPELAEQAIYSEFEDNLQIADAEAMTLWCQWVTRIALRDNLPPPAPDAWPVLIREAV
                     RYTGEQDTLPLCPLWIARQFKEASPLCEGDTCGAEALSLMLARREWREGFLAERMQGE
                     ILQEQILIETEGERVGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFNDIERKAE
                     LGGNIHAKGMMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISA
                     LANVPVNQNIAITGSVDQFGRAQPVGGLNEKIEGFFAICEQRELNGKQGVIIPAANVR
                     HLSLKSELLQAVKEEKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQERIAQATQ
                     QEGRHRFPWPLRWLNAFIPN"
     gene            16398..16850
                     /gene="matP"
                     /locus_tag="OQP62_001031"
     CDS             16398..16850
                     /gene="matP"
                     /locus_tag="OQP62_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ter protein MatP"
                     /protein_id="HCS1720642.1"
                     /translation="MKYQQLENLESGWKWKYLVKKHREGELITRYVEASAAQEAVNLL
                     LALENEPVRVNVWIDRHMNPALLNRMRQTIRARRKRHFNAEHQHTRKKSIDLEFMVWQ
                     RLAGLAQRRGKTLSETIVQLIEDAEHKEKYATQMTTLKQDLQALLGKK"
     gene            complement(16922..17974)
                     /gene="ompA"
                     /locus_tag="OQP62_001032"
     CDS             complement(16922..17974)
                     /gene="ompA"
                     /locus_tag="OQP62_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpA"
                     /protein_id="HCS1720643.1"
                     /translation="MKKTAIAIAVALAGFATVAQAAPKDNTWYAGAKLGWSQYHDTGF
                     IHNDGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGDNTNGAYKAQGVQLTA
                     KLGYPITDDLDVYTRLGGMVWRADTKSNVPGGASTKDHDTGVSPVFAGGIEYAITPEI
                     ATRLEYQWTNNIGDANTIGTRPDNGLLSVGVSYRFGQQEAAPVVAPAPAPAPEVQTKH
                     FTLKSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQG
                     LSEKRAQSVVDYLISKGIPSDKISARGMGESNPVTGNTCDNVKPRAALIDCLAPDRRV
                     EIEVKGVKDVVTQPQA"
     gene            complement(18329..18838)
                     /gene="sulA"
                     /locus_tag="OQP62_001033"
     CDS             complement(18329..18838)
                     /gene="sulA"
                     /locus_tag="OQP62_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division inhibitor SulA"
                     /protein_id="HCS1720644.1"
                     /translation="MYTSGYANRSSSFPTTTHNAARTATENAAAGLVSEVVYHEDQPM
                     MAQLLLLPLLRQLGQQSRWQLWLTPQQKLSREWVQSSGLPLTKVMQISQLAPRHTLES
                     MIRALRTGNYSVVIGWMTEELTEEEHASLVEAAKVGNAVGFIMRPVRAHALPRRQHSG
                     LKIHSNLYH"
     gene            19055..19660
                     /locus_tag="OQP62_001034"
     CDS             19055..19660
                     /locus_tag="OQP62_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family DNA transformation protein"
                     /protein_id="HCS1720645.1"
                     /translation="MRALSYDRIYESQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVA
                     NGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLNYYRVDESLWRDQQQLVRLSKYS
                     LDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
                     PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG"
     gene            complement(19647..21800)
                     /gene="yccS"
                     /locus_tag="OQP62_001035"
     CDS             complement(19647..21800)
                     /gene="yccS"
                     /locus_tag="OQP62_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01666 family membrane protein"
                     /protein_id="HCS1720646.1"
                     /translation="MLSPLIRRYTWNSTWLYYIRIFIALCGTTALPWWLGDVKLTIPL
                     TLGMVAAALTDLDDRLAGRLRNLIITLICFFIASASVELLFPWPWLFALGLTLSTSGF
                     ILLGGLGQRYATIAFGALLIAIYTMLGAFLYDHWYQQPLLLLAGAVWYNLLTLTGHLL
                     FPIRPLQDNLARSYEQLAHYLELKSRLFDPDIEDESQAPLYDLALANGQLMATLNQTK
                     VSLLTRLRGDRGQRGTRRTLHYYFVAQDIHERASSSHIQYQTLRDYFRHSDVMFRFQR
                     LMSMQAQACTQLARCILLRTPYQHDPRFERVFTHIDAALERMRASGASLELLNTLGFL
                     LTNLRAIDAQLATIESEQAQAMPRNESENQLADDSLHGFSDIWLRLSRNFTPESALFR
                     HAVRMSLVLCIGYALIQITGMRHGYWILLTSLFVCQPNYNATRHRLALRIIGTLVGVA
                     IGLPILWFVPSLEGQLVLLVITGVLFFAFRNVQYAHATMFITLLVLLCFNLLGEGFEV
                     ALPRVIDTLIGCAIAWAAVSFIWPDWRFRNLPRVLQRATDANCRYLDAILEQYHQGRD
                     NRLAYRIARRDAHNRDAELASVVSNMSSEPDVTAETREAAFRLLCLNHTFTSYISALG
                     AHREKLSNPDVLGLLDDAVCYVDDALHHQPEDEQRVHQALEGLKQRVQSLETRPDSKE
                     PLVVQQIGLLIALLPEIGRLQRQISPPTSTLITQP"
     gene            complement(21819..22265)
                     /locus_tag="OQP62_001036"
     CDS             complement(21819..22265)
                     /locus_tag="OQP62_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YccF domain-containing protein"
                     /protein_id="HCS1720647.1"
                     /translation="MRTVLNILNFVLGGFATTLAWLLATLVSIVLIFTLPLTRSCWEI
                     TKLSLFPYGNEAIHVDELNPAAKSVLMNTGGTLLNIFWLLFFGWWLCLMHIASGIAQC
                     VTIIGIPVGIANFKIAAIALWPVGRRVVSVETARAAREANARRRFE"
     gene            22389..24443
                     /gene="helD"
                     /locus_tag="OQP62_001037"
     CDS             22389..24443
                     /gene="helD"
                     /locus_tag="OQP62_001037"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase IV"
                     /protein_id="HCS1720648.1"
                     /translation="MELKATSLGKRLAQHPYDRAVILNAGVKVSGDRHEYLILFNQLL
                     AIHCKRGLVWGELEFVLPEDKVVRLHGTEWSETQQFHRYLDAHWRRWSQEMSDVAAQA
                     LQEQWARISERTGGNQWLTREHVRGLEHEIRQTFAALPLPVSRLEEFAHCREIWRKCL
                     AWLQDSEGSRQQHNQAYADAMLEAHADFFTQIESSPLNPSQARAVVNGESSLLVLAGA
                     GSGKTSVLVARAGWLLARGQADAGQILLLAFGRKAAEEMDERIRERLHTEEITARTFH
                     SLALYIIQQGSKKAPVVSKLESDATARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQ
                     WVVPEGNFWDDETLQRRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKRIKLM
                     APLLKAWKSALKAENAVDFSGLIHQAMVILEKGRFISPWKHILVDEFQDISPQRAALL
                     EALRKQNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTFGEGEHCHLDTTYRFNSRI
                     GDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQLDALLDKLSGYAKEDERILVL
                     ARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQADYVILVGLQEGNDGFPAPARES
                     IMESALFPQVEDFPDAEERRLLYVALTRARARVWLLFNKDNPSRFVEALKQLDVPVAR
                     KP"
     gene            complement(24479..24937)
                     /gene="mgsA"
                     /locus_tag="OQP62_001038"
     CDS             complement(24479..24937)
                     /gene="mgsA"
                     /locus_tag="OQP62_001038"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HCS1720649.1"
                     /translation="MELTTRTLPTRKHIALVAHDHCKQMLMNWVERHQPLLEKHVLYA
                     TGTTGNLIQRATGMDVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDV
                     KALLRLATVWNIPVATNVSTADFIIQSPHFNDAVDILIPDYARYLAERLK"
     gene            complement(25032..25694)
                     /locus_tag="OQP62_001039"
     CDS             complement(25032..25694)
                     /locus_tag="OQP62_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2057 family protein"
                     /protein_id="HCS1720650.1"
                     /translation="MKTGALATFLALCLPVTVFATTLRLSNEVDLLVLDGKKVSSSLL
                     RGAESIELENGPHQLVFRVEKTIRLPGNEERLYISPPLVISFDTQLISQVNFQLPRLE
                     NEREASHFNAAPRLALLDGDAMPIPVKLDILAITSTAKVVDYEIETERYNKSAKRASL
                     PQFATMMADDSTLLSDVSELDTVPPQSQTLTEQRLKYWFRLADPQTRHHFLQWAEKQP
                     PS"
     gene            25868..26281
                     /locus_tag="OQP62_001040"
     CDS             25868..26281
                     /locus_tag="OQP62_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HCS1720651.1"
                     /translation="MKETDIADVLTSTRTIALVGASDKPDRPSYRVMKYLLEQGYHVI
                     PVAPKVAGKTLLGQQGYATLADIPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWLQL
                     GVINEQAAVLARDAGMTVVMDRCPAIEIPRLGLAK"
     gene            complement(26326..26643)
                     /gene="hspQ"
                     /locus_tag="OQP62_001041"
     CDS             complement(26326..26643)
                     /gene="hspQ"
                     /locus_tag="OQP62_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein HspQ"
                     /protein_id="HCS1720652.1"
                     /translation="MIASKFGIGQQVRHSLLGYLGVVVDIDPEYSLDEPSPDELAVND
                     ELRAAPWYHVVMEDDDGQPVHTYLAEAQLRSEMRDEHPEQPSMDELARTIRKQLQAPR
                     LRN"
     gene            complement(26701..27912)
                     /gene="rlmI"
                     /locus_tag="OQP62_001042"
     CDS             complement(26701..27912)
                     /gene="rlmI"
                     /locus_tag="OQP62_001042"
                     /EC_number="2.1.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytosine(1962)-C(5))-methyltransferase
                     RlmI"
                     /protein_id="HCS1720653.1"
                     /translation="MTESTFPQYPRLVLSKGREKSLLRRHPWVFSGAVSRLEGKANLG
                     ETIDIVDHQGKWLARGAWSPASQIRARVWTFDKTESIDIAFFTRRLRQAQQWRDWLAK
                     KDGLDSYRLIAGESDGLPGVTIDRFGHFLVLQLLSAGAEYQRAALISALQTCYPDCAI
                     YDRSDVAVRKKEGMALTQGPVTGELPPALLPIEEHGMKLLVDIQGGHKTGYYLDQRDS
                     RLVTRRYVENQRVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLD
                     LSKAEFVRDDVFKLLRAYREHGEKFDVIIMDPPKFVENKSQLMGACRGYKDINMLAIQ
                     LLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEG
                     LYLKGFACRVM"
     gene            28127..28674
                     /locus_tag="OQP62_001043"
                     /pseudo
     CDS             28127..28674
                     /locus_tag="OQP62_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460055.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
     gene            28700..>28897
                     /locus_tag="OQP62_001044"
     CDS             28700..>28897
                     /locus_tag="OQP62_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HCS1720654.1"
                     /translation="MHIRHQDLTTAEVRSSHLHRLHRVTLFSAAICHITQGSKVIIQD
                     DSRLVAGPGELIIIPANTPLEI"
BASE COUNT         7088 a         7145 c         7960 g         6704 t
ORIGIN      
        1 ccgtttgtgc ctgaaaagat gaacattctg cgtagcgcga tttgcgcaac aggaatagac
       61 tggagtcgac actctacaca aagatgcgaa aggtttttta tgacacaaca gccacaagcc
      121 aaataccgcc atgactatcg cgcgccggat taccagatta ctgatattga attgaccttt
      181 gacctcgatg ccgaaaaaac cgtggtcacc gcaataagcc aggctgttcg tcatggcgcg
      241 cctgatgcgc ctcttcgcct tgatggggaa gatttaacgc tggtatctat ccacgtcaac
      301 gatgcgccgt ggacagcata taaggaagaa gagggcgcgc ttatcatcag cgacctgcca
      361 gagcgtttta cgttacgcat tgtcaacgag ataagtccgg cggcgaatac ggcgctggaa
      421 ggattgtacc agtccggcga tgcgctctgt acccagtgtg aagcggaggg cttccgccat
      481 attacctggt atcttgaccg cccggacgta ctggcgcgat ttaccaccaa aattattgcc
      541 gataaaagca aatatccgtt cctgctttcc aatggcaacc gtgttgcgca gggtgaactg
      601 gagaatggcc gtcactgggt tcagtggcaa gatccgttcc cgaaaccgtg ttatctgttt
      661 gcgctggtgg ccggtgattt tgacgtgctg cgcgatacct ttaccacccg ctccgggcgt
      721 gaagtcgcat tagaactgta cgttgaccgt ggcaatctgg atcgcgcgcc gtgggcaatg
      781 acctcgctga aaaattccat gaaatgggat gaaacgcgtt ttgggctcga atatgacctc
      841 gacatctata tgattgtcgc ggtggatttc tttaatatgg gcgcgatgga gaataaaggt
      901 ctcaatatct ttaactccaa atacgtgctg gcgcgaaccg ataccgcgac ggataaagat
      961 tatctcgata ttgagcgcgt gataggccat gagtatttcc acaactggac cggcaaccgc
     1021 gtcacctgcc gcgactggtt ccagttgagc ctgaaagagg ggctcaccgt gttccgcgat
     1081 caggagttta gctctgattt ggggtcacgc gcggtgaacc gcatcagtaa cgtgcgtacc
     1141 atgcgcggtt tacaattcgc ggaagacgcc agcccgatgg cgcatcctat ccgcccggat
     1201 aaagtaatcg aaatgaataa cttctacacc ctcaccgttt atgaaaaggg tgcggaagtc
     1261 attcgcatga tccacacgtt gctgggtgag gaaaatttcc agaaggggat gcagctttat
     1321 tttgagcgcc atgacggcag cgccgcgacg tgtgatgact tcgtacaggc gatggaagat
     1381 gcttctaatg tcgatttgtc ccatttccgc cgctggtaca gtcagtccgg cacgccgatt
     1441 gtaacggtaa aagatgatta taatccggaa accgagcagt acacgttgac catcagccag
     1501 cgcactccgg cgacggcgga tcaggcggag aagcagccgc tgcatattcc attcgccatc
     1561 gaactgtacg ataacgaagg caacgtcatt ccgttgcaaa aaggcggtca cccggtcaat
     1621 gccgtgctga acgtcacgca ggcggagcag acatttacct tcgataatgt ctacttccag
     1681 cctgttccgg ccttgctgtg cgagttttca gcgccggtga agctggaata taaatggagc
     1741 gatcagcagt tgacgttcct gatgcgccat gcgcgcaatg atttctcccg ttgggatgcg
     1801 gcgcaaagcc tgctggccac atacattaaa ctgaatgtgg cgcgtcatca gcaggggcaa
     1861 ccgctatcgc ttccggtgca tgtcgctgat gcgttccgtg cagtactgtt ggatgagaaa
     1921 atcgatccgg cgttggccgc agaaatttta acgctgcctt cggccaatga aattgcggag
     1981 ctgtttgagg tcattgaccc gatcgccatt gcgcaagttc gtgaagcgct aacgcgtacg
     2041 ctggcggcag aactggcgga tgagttcctg gctatctata acgccaatca tctggatgag
     2101 tatcgtgttg atcacggcga tatcggtaag cgcacgctgc gcaatgcttg cctgcgcttc
     2161 ctgacgttcg gcgagacgga gctggctaat acgctggtca gcaaacagta tcgcgacgcc
     2221 aataatatga ccgatgcgct ggcggccctg tctgctgcag tggcggcgca gttgccgtgc
     2281 cgcgatacgc tgatgcagga gtatgacgat aagtggcatc aggacggcct ggtaatggat
     2341 aaatggttta tcctgcaatc cacaagcccg gcggaaaatg tactggaaac cgtacgcagc
     2401 ctgctcaaac accgttcttt cagtatgagc aacccgaacc gcatccgttc attaattggc
     2461 gcgtttgctg gcagcaaccc ggcggcgttc catgcgcaag acggtagcgg ataccagttc
     2521 ctggtcgaga tgctgaccga tctgaatagc cgtaacccgc aggtagcatc tcgcctcatt
     2581 gaaccgctga ttcgtctgaa acgttatgat gataagcgtc aggagaaaat gcgcgcggcg
     2641 ctggagcagt taaaaggact ggagaatctt tccggcgatc tgtacgagaa gataactaaa
     2701 gcgttagcct gacagtatcc gttataaaga ggtaaaacat gcccggtaag cgttagcgct
     2761 gccgggtatt tttttgccgg atgatgacgc ttcctggcga aacgtgaagt gagaatgaag
     2821 gaaaacgatt gctatttatt gccataggtc aattcccttt tgctttgtta tcgcccataa
     2881 tacgcccccg gtttgcacac cgggaatcca ggagagttca tgtactatcc cttcgttcgt
     2941 aaagcccttt tccagctcga tccagagcgc gctcatgaat ttacatttca acaattacgc
     3001 cgcattacag gtacgccgct ggaagcgctg gtgcgccaga aagtaccgac aaagccggtt
     3061 acctgcatgg gacttacctt taaaaatcca ctggggctgg ctgccggtct ggataaagac
     3121 ggggagtgca tcgacgcatt aggcgcgatg gggtttggct ccctggaaat cggcaccgtg
     3181 acgccgcgcc cacagccggg taacgataag ccacgtcttt ttcgtctggt ggatgctgaa
     3241 ggtctaatca atcggatggg ctttaataat ctgggcgtcg ataacctggt cgagaatgtt
     3301 aaaaaagccc attttgatgg tattctggga attaacatcg gtaaaaataa agatacgcct
     3361 gtcgaaaatg gcaaagatga ctacctgatt tgtatggaaa aagtctatgc ttatgcgggt
     3421 tatatcgcca ttaatatttc ttcgccgaat acgccagggt tacgtacgct ccagtatggc
     3481 gatgcgctgg acgatctgtt aactgccatt aaaaataagc aaaacgatct tcaggtgatc
     3541 caccataaat atgtgccggt ggcagtaaag atcgcgccgg atctttgtga agaagaattg
     3601 atccaggttg ccgatagcct gcttcgtcat aatattgatg gggtgattgc gacaaatacc
     3661 accctcgatc gttctctggt acaaggaatg aaaaattgcc agcaaacggg gggattaagt
     3721 ggccggccat tacaattaaa aagcacagaa attattcgcc gtttatccct ggagttaaaa
     3781 ggacaattgc ctattatcgg cgtcggcggc attgactcag ttatcgccgc gcgcgagaag
     3841 atagcggcag gagctacgct ggtacaaatt tattccggct ttatttttaa aggcccgcca
     3901 ttgattaaag aaatcgtaac gcacatctaa actttaccct ttatcagaca accagggctt
     3961 tatttccggc actggttgtt ttatatttct ccactgttgc ttatttagac attttaggct
     4021 tttattattg gggtaataaa cgaagcggca aaaggacaat gctgttacga gttgcttaaa
     4081 agcgggagag aggtgatgcg aattaaacct gacgataact ggcgctggta ttatgatgaa
     4141 gagcacgatc gtatgatgct cgatctcgcc aatggtatgc tttttcgctc gcgcttctct
     4201 cgtaaaatgc ttacgccgga cgcgttttgc ccgaccggtt tttgtgtgga tgatgccgcg
     4261 ctctattttt cctttgaaga aaaatgccgg gatttcgaat taaccaaaga gcaacgcgcg
     4321 gagctggtat tgaatgcgct ggtggcgatt cgctatctca aaccgcagat gccgaaaagc
     4381 tggcattttg tggcgcatgg cgaaatgtgg accccgggca cgggtgatgc cgcaagcgtc
     4441 tggttaagcg atacggcgga acaggttaat ttgctggtcg ttgagccggg agaaaatgcc
     4501 gcgttgtgtc tgctggcaca gccaggcgtg gtgatagcag gccgaaccat gcagcttggc
     4561 gatgcgatta aaattatgaa cgacaggctg aaaccgcagg ttcactgtca cagtttcagc
     4621 cttgaacaag cggtttaatt ttccagtcgt aacgcggtct taggcacgca gctacagctc
     4681 agaatcgtac catcgtcacc catagccgat tttttcagcg gacttacttc gccttccagc
     4741 aaacgtatcc ggcagcaacc acagatacca gcccggcaag aatacggaat acgaattccc
     4801 tgattctcca actgttccag tagcacctgt tgattattcc cgcagaaggt ttgcccctgc
     4861 cagtcgatgg ttacactccc gtccgggtgt ttctctggcg taacgctgtc gtcgagcgtt
     4921 gtggcgccat aagcttttgc cggcgctgtc gccagtatct ccacctcatc gccgacgcga
     4981 atgacgccgc tattgcgggc aatcagattc tgaccgaaat ccacatcgcc attgtcctgg
     5041 gcggtacgaa aagcttgcag tgtcgccagc ggttcgccgg aaggatgttt ttgccccttt
     5101 tcagggctga cggtcgtaaa aatacagcga ctacagggct tcacgacgtc aaaaatcaca
     5161 tcgccaatgc gaagcacttt ccagctatct tcctcccagg ccgctacgcc ggaaaccact
     5221 aagtttgggc gaaattgttc catttgtacg cctgccggac aacgctgttg cagatcgcgc
     5281 agtgaggctt cgttggtcaa taaatacggg tagccatcgg caaatcccag cggcaccgcg
     5341 ttatgccgtt taacccggcg cgtcaactgc ggcccaaccc agcacaactg gacatcgcgg
     5401 gagaaaaagc cgctcaacca ttgattaatc gccgtcgggg cgacgcgagc ggtaaaatgg
     5461 tttccccaga cctcggtcgg cgcatcctgc ggggtgaaat ccgtaaagcg aaccagcgcg
     5521 ctgctgccgt ctggcgcggt caaatggagg ccgtcgtgta agggagaggg ggtaaaacgt
     5581 accatttgtg gaaactggcg ggcggtaata aatgtgccgt cagactcggt taccatgaag
     5641 atgcgatcaa aagccaggcc gctgatatct gccagcgcat gagtcaggcc aatgccgcgc
     5701 atggatttga ccggatgaat aaagagccgt gataacgtcg ccaccgtaca gtccctcaaa
     5761 tgaaaataag ccttcaactt tatgacatgg gcgtgagatt agctataatg cgcaacaatt
     5821 ttcttagcgt aaaagtgaca atatgaattc tctgtttgcc agtacggccc gcgggctgga
     5881 agagctgtta aaaattgaac tggaaaaact gggcgccgta gggtgtcagg ttgttcaggg
     5941 tggggtccat tttcagggcg acacgcggct tatttaccag agcctgatgt ggagccgcct
     6001 ggcctcgcgt attatcctgc cgatgggtga gtgcaaggtc tacagcgatc tcgatcttta
     6061 cttcggcgtt caggcgataa actggacaga gatttttaat cctggcgcga cgtttgcggt
     6121 gcatttcagc ggcctgaacg acaccatccg taatagtcag tatggcgcga tgaaagttaa
     6181 agacgcgatt gtcgatgcgt ttacgcggaa aaatcttccg cgtccaaatg tggaccgcga
     6241 atcgccggac ctccgtatta acgtctggct gaataaagaa acggccagca ttgcgctgga
     6301 tctcagtggt gatggcctgc acctgcgcgg ttatcgcgat cgcaccgggc tggcgccaat
     6361 taaagagacg ctggcggcag cgattgttat gcgttccggc tggcaaccag gtacgccgct
     6421 gctcgaccct atgtgtggtt cggggacact gttgattgag gccgcgatgt gggcgaccga
     6481 tcgcgcgccg ggcctgcatc gtggtcactg gggatttagc ggctgggcgc agcatgacga
     6541 ggctatctgg caggaagtga aagccgaagc gcagacccgg gcgcgtaagg ggctggcgga
     6601 gtattcctct catttctacg gttccgacag cgatgcgcgc gtcattgagc gggcgcgcag
     6661 caacgcccgt cgcgccggta tcggggagct tatcactttt gaagtgaaag atgtggcgca
     6721 actgagtaat ccattgccga aaggcccgta tggtacggtg atcagtaacc cgccttacgg
     6781 cgaacgtctg gacagcgatc cggcgctgat tgcgttgcac agcctgttgg gccgtaccat
     6841 gaaaaatcag tttggcggct ggaacctgtc gctgttcagc gcttcgcccg atttgctggg
     6901 cagcctgcaa ttacgcgccg acaaacagtt taaagccaag aatggcccgc tggactgtgt
     6961 gcagaaaaac tatcatattg cggaaaccac ggcggacagt aaaccggcga cggtggcgga
     7021 agattacgct aatcgcctgc gtaaaaatct taaaaagctg gagaaatggg cgcgccagga
     7081 agggattgaa tgctatcgct tgtatgatgc cgacctgccg gaatataacg tggcggtaga
     7141 ccgttacggc gactgggcgg tgattcagga atatgcgccg ccgaaaacgg tggatgcgca
     7201 aaaagcgcgg caacgtctgt tcgatattat tgcggcaacc ttgtcagtgc tcggtattcc
     7261 gccgaataaa ctggtgttaa aaacccgcga acggcaaaaa ggaaaaaacc agtatcagaa
     7321 aatgagcgag aagggcgagt tccttgaggt cagcgaatat aatgcgcgct tatgggtaaa
     7381 tctgacggat tatctcgaca ctggtctgtt cctcgatcac cgtattgccc gcagaatgct
     7441 gggagaaatg agcaaaggca aagatttcct gaatctcttt tcttataccg gcagcgccag
     7501 cgtacatgcg ggtctgggcg gcgcgcgcaa caccacaacg gtggatatgt cccgcaccta
     7561 tctggagtgg gccgaacgta atttgcgtct gaacggactg agcggccgcg cgcatcgcct
     7621 gattcaggcc gactgcctgg gctggctgcg cgaggcgaat gaacagttcg atttgatctt
     7681 tatcgatccg ccgacgttct ctaactcaaa acgtatggaa gagtcgtttg atgttcagcg
     7741 cgatcatgtc gcgttaatga aagatttaaa acgcctgctg cgtaaaggcg gcaccatcat
     7801 gttctcaaat aataagcgcg gattccgtat ggatctggaa gggctggctg agctggggct
     7861 taccgcacaa gaaattacgc aaaaaacgct ttccccggat tttgcccgta accgtcagat
     7921 tcataattgc tggctgatcc gcgccgcctg aaaggaaaag taaatgtcat taatcagtat
     7981 gcatggcgca tggctgtcgt tcagcgacgc gccgcttctc gataacgcag agttgcatat
     8041 cgaagataac gaacgcgtct gtctggtggg gcgtaacggc gccgggaaat ccaccttgat
     8101 gaagatcctc aaccgcgaac agggtctgga cgatgggcgt attatttatg aacaggatct
     8161 gatcgtcgcg cgtctgcaac aggacccgcc ccgtaatatt gcgggtagcg tctatgactt
     8221 tgtcgccgaa ggtatcgaag aacaagcgga atatctcaag cgctatcatg agatttcccg
     8281 tctggtgatg accgatccca gcgagaaaaa cctcaatgaa atggcgcgcg tacaggaaca
     8341 gctcgatcat cataatctgt ggcagctgga aaaccgtatt aatgaagtgc tggcgcagct
     8401 tggactcgat cctaacgccg cgctgtcgtc gctctccggc ggctggctgc gtaaagccgc
     8461 gctgggtcgg gcgctggtca gcaatccgcg cgtattgtta ctggatgaac cgactaacca
     8521 tctggatatc gaaactatcg actggctgga agggtttctg aaaaccttta acggaacgat
     8581 tatttttatc tctcacgatc gttcgtttat tcgcaatatg gcgacccgca ttgtcgatct
     8641 cgatcgtggc aaactggtca cctatccggg aaattacgat caatacctgc tggagaaaga
     8701 agaagcgctg cgcgtagaag agttacaaaa cgcggaattt gatcgcaaac tggcacagga
     8761 agaagtctgg attcgccagg ggatcaaggc gcgccgcacc cgtaatgaag ggcgcgtgcg
     8821 ggcgttaaaa gcgatgcgtc gtgaacgcag cgagcgccgg gaagtgatgg gcacggcgaa
     8881 gatgcaggtc gaagaggcga cgcgctccgg taaaatcgtt tttgagatgg aaaacgtcga
     8941 ttaccaggta gaaggaaaac agctggtaaa agatttctcc gctcaggtac agcgcggcga
     9001 caagattgcg ttaattggcc cgaacggctg cggtaaaacc acgctactga aactgatgct
     9061 gggacagctt caggctgaca gcgggcgcat ccacgtagga acgaagctgg aagtcgccta
     9121 cttcgatcag catcgcgccg aactggaccc ggaaaaaacc gtgatggata accttgcgga
     9181 aggcaagcaa gaggtgatgg taaacggtaa gccgcgccat gtactgggct atttgcagga
     9241 cttcctgttt caccccaaac gggcgatgac gcccgtccgc gcgctttccg gcggcgaacg
     9301 taaccgtctg ctgctggcgc gactgttcct caagccgagc aatcttttaa ttctcgatga
     9361 accaacgaac gatcttgacg tcgaaacgct ggaactatta gaagaattaa ttgatggcta
     9421 tcagggcacg gtactactgg tcagccatga tcggcaattt gtcgataata ccgtgacgga
     9481 atgctggatt ttcgagggcg gcggcaaaat cggacgttat atcggcggct accatgatgc
     9541 gcgtgcgcag caagagcagc atctggcgac gaaacagccg atgacgaaaa aaaatgagga
     9601 agttattgcc cctaaagcag aaattgtaaa acgtggcagt agcaaactaa gctataaact
     9661 gcagcgcgag ctggagcagt tacccggtca gcttgaagac ctggaagcga agctggaagc
     9721 gctacaggcg caggttgcgg atgcggcctt ttttagccaa ccccatgagc aaacgcagaa
     9781 agttctggcc gatttaagtc aggcggagca agaacttgag caagccttcg aacgttggga
     9841 gtatcttgaa ggcctgaaaa acggggcata acgaaaggag cgcctatgtg tgaacatcac
     9901 catgctgcga agcacatatt gtgcccgcaa tgcgacatgc tggtggcttt accccgcctc
     9961 tcgcatgggc aaaaagcagc atgtccacga tgcggcgcaa cgttaacgac cgagtgggac
    10021 gcgccccggc agcgtcctac cgcctatgcg ttagcggcac tatttatgtt gctgctttct
    10081 aacctttttc ccttcgtgaa tatgaatgtc gcgggcgtca ccagcgaagt cacgcttctg
    10141 gaaatccccg gcgtcatgtt ttctgaagat tacgccagcc tcggcacgtt ctttttatta
    10201 tttgtccaac tggtgccggc attttgcctg gtgaccattc tattacttgt caaccgcgcc
    10261 agtctgccgt tgtcggtaaa aaaaacgctg gcaaggatct ttttcctcct caaatcgtgg
    10321 ggaatggcgg aaatatttct cgccggggtg ttggtcagtt ttgttaagct gatggcttac
    10381 ggcgatatcg gcatcggcag cagctttatt ccctggtgct tattttgtct cgttcaactg
    10441 cgggcgttcc agtgtgtcga tcgccgctgg ttgtgggatg atatcgcccc gcaacctgca
    10501 ctggcgcagc cgttaacgcc ggggattacc ggtatccggc agtctttgcg ttcttgcgcc
    10561 tgctgtacgg cgatcctgcc tgcggagagt ctcgtctgtc cgcgttgcca tacgaaaggc
    10621 tatgtccggc gtaaaaacag tttgcagtgg acgctggcgt tattatttac ctcgatcatg
    10681 ctttatctgc ccgccaatat attgccgatt atgattactg acttactggg ctcgaaaatg
    10741 ccgtcgacca ttctggctgg cgtgattttg ctgtggagcg aggggtctta tccagtggcg
    10801 gcggttatct ttcttgccag tattatggtg ccgacgctaa aaatgatcgc cattgcctgg
    10861 ctttgttggg atgcgaaagg ccacggtaag cgcgacagtg aacggatgca ttttatttat
    10921 gaagtagtgg agtttgtggg gcgctggtca atgattgatg tctttgtcat tgccgtactc
    10981 tctgcgctgg tgcgtatggg agggttaatg aatatttatc ctgcgatggg tgcgttgatg
    11041 tttgctttag tcgtcataat gacaatgttt tctgcgatga cctttgatcc gcgtctgtcg
    11101 tgggatcgtg aatacgaacc aggccatgag gagtcctgat agcatggaac ctaaaaaagg
    11161 ggaagccaaa gtacaaaagg tgaaaaattg gtcgcctgtc tggatattcc cgattgttac
    11221 tgcgcttatc ggagcctgga ttctgtttta tcactacagc caccagggac cggaagttac
    11281 cttaattacc accaatgcgg aaggcattga aggcggaaaa acgacgatca aaagtcgcag
    11341 cgtggatgtc ggcgtggttg aaagcgcgac gctgactgac gatctgaccc acgtacaaat
    11401 caaagcgcgg cttcattccg gtatggaaaa gttgctgcat aaagactcgg tattttgggt
    11461 cgtaaaaccg caggtggggc gtgaaggcat aagcgggctt gggacgttgt tatcaggcgc
    11521 gtatattgaa ctacaaccag gaagtaaggg cagtcagccg gaaagctatc agcttcttga
    11581 ctcaccgccg ttggcgccgc ccgatgccaa aggtattcgt gtgattctgg acagcaaaaa
    11641 ggccggtcag ctcagtcctg gcgatcccgt tctgttccgg ggctatcggg tagggtccgt
    11701 tgaaaccagc tctttcgatc cgcaaaaacg gacaatgagt tatcagttgt tcattaaggc
    11761 gccaaacgat cgattggtca ccagtaatgt ccgattctgg aaagatagcg gtatcgctgt
    11821 ggatctgaca tcggcgggaa tgcgcgtgga aatgggatcg ttgacgacgt tatttggcgg
    11881 cggcgtgagt tttgatgtgc cggaaggact tgagcagggg caacccgtcg ccgaaaaaac
    11941 ggcgtttaat ctctacgacg atcaaaaaag tattcaggat tcgctgtaca ccgatcatat
    12001 cgattacctg atgttcttta aagattcggt gcgcggatta caacccggcg cgccgctgga
    12061 gttccgcggt attcgtctgg ggacggtaag caaagtgcct ttctttgcgt ctaatatgcg
    12121 tcaggtgttt aacgacgatt accgtattcc tgtgctggtg cgcattgaac cggagcgtct
    12181 gaaagcgcaa ctgggagaaa atgcggatgt tggcgcgcat ttgacggaac tgcttaagcg
    12241 cggtttacgc gcttcgctta aaaccggtaa cctggtgacc ggggcgctgt atgtcgatct
    12301 ggacttttat cctaaggagc cgccgattac cggactacgc gaatttgatg gttatgaaat
    12361 tattcccacc gtcagcagcg gcctggcgca aattcaacag cgactggtgg aaacgttgga
    12421 taagatcaac aacctgccgc tgaatccgat gattgaacaa gcgaccaata cgctgtctga
    12481 aagccagcgt actatgcgtc ggttgcaaac cacgctggat aatatgaaca agattacctc
    12541 cagtcagtcg atgcagcagc ttccggcgga tatgcaaacg acgttacgcg aacttaaccg
    12601 cagtatgcag ggcttccagc ctggatcggc ggcgtataac aaaatggtgg cggatatgca
    12661 gcgtctcgat caggtgcttc gtgagttaca accggtgttg aaaactctga acgagaagag
    12721 caacgcgctg gtatttgaag cgaaggataa aaaagatcct gagcctaaga gggcgaaaca
    12781 atgaaaaaat ggctagtcgt gataatggcg ttctggctgg cgtcatgtag ttccggcgga
    12841 gaaaataaaa gctattatca gctcccgata gcgcaaagcg gtgtgcaaag caccgcaagt
    12901 cagggcaacc gtctcttatg ggtagagcag gtttccgtac ctgactatct ggcaggtaac
    12961 ggtgtggtgt atcaaaccag tgatgtccag tatgtgattg ccaataacaa tctgtgggcc
    13021 agcccgctgg atcagcaatt acgtaacacg ctggtggcga atcttagcgc ccggcttcct
    13081 ggctgggtcg tcgcttccca gccgttggga accacccagg atacgttgaa cgttaccgta
    13141 accggattcc atggacgtta cgatggtaag gttatcgtca gcggggagtg gttattaaac
    13201 cacaacggac aactgattaa gcggcctttc catatcgaag ccagccagca gaaagatggc
    13261 tatgatgaga tggtcaaagt actggcaagc gcatggagtc aggaagcggc cgctatcgca
    13321 gatgagataa agcgccttcc ctgagataaa aataatgtaa atttaaccgc ttcaggtcgt
    13381 gcgcctgagg cggtttttat ttttgacgcc ggaaaaatag ttgttatggc tcacattttt
    13441 tgtacaaatg atttaccgta tagctcacaa atatgacatt ggtgtgaatt ttgcgcattg
    13501 acgggcgatc catttagagg tattcgtgta gtgtgattgc acattttgta atcactgttt
    13561 tcttttccac cagatacaaa tatgagggaa acgaggcatg aggagacaaa aacgagatcg
    13621 cctggaacgg gcacatcaac gtggatatca ggccggcatc gccggacgat caaaagaaat
    13681 gtgtccctat cagacgctga atcaacggtc atactggttg ggaggttggc gacaagccat
    13741 ggaggacagg gcggtaatgg cctgattctg tctctttaga aaaagaaacc tccgcagtgc
    13801 ggaggtttcg cctttatggg ctttgcaagc atgataccga tagcgcggaa tatcaattca
    13861 acacttagaa cgcggaagta tcctggaaca aaccgacttt caaatcgtgt gcggtataga
    13921 tcagacgacc atccaccaga acctcaccgt ccgccaggcc catgatcagg cgacggttta
    13981 cgatacgttt aaaatgaatg cgataggtga ctttcctggc tgtcggcaga acctgaccgg
    14041 taaatttcac ttcgcccacg cccagagcgc ggcctttgcc ttcgccgccc aaccagccca
    14101 ggtagaatcc caccaattgc cacatagcat ccagacccag acaaccgggc atcaccggat
    14161 cgccgataaa gtggcatccg aagaaccata gatccggatt gatatccagc tcggcttcga
    14221 catagccttt gtcgaaattg ccgcccgttt cggtcatctt aacgacgcgg tccatcatca
    14281 gcatgttcgg cgcagggagt tgcggccctt tagcgccaaa cagttcacca cgaccagagg
    14341 caagaaggtc ttcttttgta taggattcgc gtttatctac catgttttat gtaaacctta
    14401 ttttattgaa gcacgcagga tagctaacac gtgtacgctg aacaagtccg atcagttcgg
    14461 aataaaagcg ttcagccaac gtaatggcca cgggaaacga tgacggcctt cctgttgcgt
    14521 cgcctgcgcg atacgctcct ggatagtctg catcaacgtc gtttgacctt cgccatccca
    14581 caccagattt aacagtagcg gtaaggcgtc ggtcacgtcg tctaccgccc agatagtgaa
    14641 cttctcttct ttaaccgctt gcagcagttc agatttaaga ctgagatggc ggacattggc
    14701 ggcagggata atcacgccct gtttaccgtt taattcccgc tgctcgcaga tggcgaagaa
    14761 accttcaatt ttttcgttta gcccgcccac tggttgcgcg cgaccaaact gatcgaccga
    14821 gccggtaatc gcaatatttt gattcactgg cacattggcc agcgcgctga tgagcgcaca
    14881 taattccgcc attgaggcgc tatcgccatc cacttcgctg taggactgct caaaggttaa
    14941 cgaggcagag aagggaattt gttgctccag ctgcaactcc gacatcagga aggcctgcat
    15001 aatcatcatt cccttagcgt ggatatttcc gccaagttcg gccttgcgct caatatcgtt
    15061 aaattcgcca tcgccgatat gcacaacaca gctaattcgc gacggttcgc caaaggcgcg
    15121 cggatgtccg ggaaactcaa tgacggaaag cgcattgatt tgtccaacgc gttcgccttc
    15181 ggtttcaatc aggatctgct cttgcagaat ctcgccttgc atccgctccg ccagaaagcc
    15241 ttctcgccat tcgcgtcggg caagcatcag actgagcgct tctgcgccgc aggtatcgcc
    15301 ttcgcataaa ggcgacgcct ccttaaactg gcgggctatc cacagtgggc aaagaggcag
    15361 cgtatcctgt tcgccggtat agcgcacagc ctcgcgtatc aggacgggcc aggcgtccgg
    15421 tgccggaggg ggcaaattat cgcgtaaagc gatacgcgtc acccattgac accacagggt
    15481 catagcttct gcgtccgcta tctgtaaatt gtcttcaaat tcactgtaga tagcctgttc
    15541 cgcgagctcc ggttccatct cctgaaaatc agccagtgat tcacgttcgc caaccagaat
    15601 caccttcagt ttgagcggca ttgatggcac ggagaccggt aatggacgcg actcgtcaaa
    15661 ggccacccag tcaaaacgct cgcggctaac gatggctttc agacgcatcc atagtaacgg
    15721 ctgcgccaga agggttcgta aggaaataat cagcacgccg ccgttcgcct gatgaaccag
    15781 tcccggttgc agggtaatgt cgccgttata ctgccgcagg caaccaaaga gctgttcggc
    15841 ttcgacccag tcagcgctga cgacttgtgt gacggtggca aagttgtctt gcgcattctg
    15901 cgcggcgcgg taatgaacag tatgcccgga aacgtcataa tgtccgccgg ttaattgtcc
    15961 ggcatcggtt tgcagagcgc ggacggcatc tgaaagtaaa gtgagatact cttgctcttc
    16021 aggcgcttta gtcagcataa aagaggatga tgcccacggc tgtataagtt gctcaagcgc
    16081 aaattgcagt cgtggctgag tatcactgag taaggtgtcg ttttcgtcag tcgcgtgtgg
    16141 ctgtgcaaat atctcctgat agctttcgct atccggaacc agatcacgcc atgcaagttt
    16201 cgtaatggtc aaagttgagg ttttttagtc tgttgtaaaa ggggggatta tagcctaacc
    16261 cgtcacgctg cacacgcgga aagcgaatgc aaagtaatat gaagacgtgt aaccattcac
    16321 aggttcgaga ttcttttctt cagatggcta aaaaactgat attctgataa cagttacacg
    16381 gtaacattgg gatcacaatg aaatatcaac aacttgaaaa tcttgaaagc ggttggaaat
    16441 ggaaatatct ggtgaaaaag caccgcgaag gggagttgat cacccgctac gtggaagcca
    16501 gtgctgccca ggaagccgtc aatttgttgt tggccctcga aaatgaaccg gtgcgggtaa
    16561 atgtctggat agacaggcat atgaatcctg ccttgcttaa tcggatgaga caaaccattc
    16621 gggcaagacg caaacgacac ttcaatgcgg agcatcagca tacgcgcaaa aaatctatcg
    16681 atttagagtt tatggtctgg cagcgtctgg cgggccttgc gcagcgacgc ggtaaaacat
    16741 tatccgaaac gattgtgcaa ctgatagaag acgcggagca taaagagaaa tatgccacgc
    16801 aaatgaccac gttaaagcag gatttacagg cgttattagg caagaagtaa cgctgaaagg
    16861 cgttgccacc cagaccagag caaaaaaccc cgcgaagcgg ggttttttat cagacggaaa
    16921 cttaagcctg cggctgagtt accacgtctt taacgccttt aacttcgatc tctacacgac
    16981 gatccggagc caggcaatcg atcagggcag cgcgaggttt cacgttgtca caggtgttgc
    17041 cggtaaccgg gttagattcg cccataccac gtgcggagat tttgtcagac ggaatacctt
    17101 tggagatcag gtaatcaaca acagactgag cacgtttttc ggacagaccc tggttgtaag
    17161 cgtcagaacc gatacggtca gtgaagccca gaacgacaac ggaaccgtct ttcggatcca
    17221 ggttgctcag ctggctgtac agctgatcca gagcctgctg gccttccggc ttcagggtcg
    17281 atttgttgaa gttgaacagt acgtcagact tcagagtgaa gtgcttggtc tgtacttccg
    17341 gagccggagc cggtgccgga gctactaccg gagcagcttc ttgctggccg aaacggtagg
    17401 aaacacctac gctcagcagg ccgttgtccg gacgggtgcc gatggtgttg gcatcaccga
    17461 tgttgttagt ccactggtat tccagacggg ttgcgatttc aggggtgatg gcatactcga
    17521 taccgcccgc gaataccggg gaaacgccgg tgtcgtggtc tttagtagac gcgccgccag
    17581 ggacgttaga cttggtgtct gcacgccata ccataccacc cagacgggta taaacgtcca
    17641 gatcgtcagt gattggataa cccagtttag cggtcaactg aacgccctga gctttataag
    17701 cgccattggt gttgtcgcct ttgtacggca tacggcctaa ccagtcgtag cccatttcaa
    17761 agccaacgta cgggttaacc tggtaaccac caaaagcacc tgcgcccagt tggttttcat
    17821 gagtcgggcc atcattgtga atgaagccgg tgtcatggta ctgagaccag cccagtttag
    17881 caccagcgta ccaggtgtta tctttcggag cggcctgcgc tacggtagcg aaaccagcca
    17941 gtgccactgc aatcgcgata gctgtctttt tcattttttg cgcctcgtta tcatccaaaa
    18001 tacgccatga atatctccaa cgagataaca cggttaaatc cttcaccggg ggatctgctc
    18061 aatagttact ctaccgatat ctacggctta tgctgagcac ccctggcgat gtaaagtcta
    18121 caacgtagtt ggaaacttac aagtgtgaac tccgtcagac atgtgaaaaa acatgacggg
    18181 tatacacatc atttaacagt ttcggatgat aaatcgtaca gcaaagattg cggaaaccgc
    18241 ttctggcaag cgttctcgca aaaaaacgtt agcactcaaa ggagatacgt tcgcgtaaaa
    18301 aaaagtccag gataaatcct aattttactt aatgatacaa attagagtga atttttagcc
    18361 cggaatgctg tctcctgggt aaagcgtgcg cacgtacagg gcgcatgata aaccctaccg
    18421 cattacctac cttcgctgct tcaaccaggc tggcatgttc ttcttctgtc agttcttcag
    18481 tcatccaacc aattaccacg ctgtaatttc ctgtacgcaa agcgcggatc atcgactcca
    18541 gcgtatgacg aggcgcaagc tggctaattt gcatcacttt cgttaatggc aaacctgaag
    18601 actgtaccca ttcacggctg agcttttgct gcggcgtgag ccagagctgc cagcgtgatt
    18661 gttggcctaa ctgacggagt aaaggcaaaa gcaggagttg cgccatcatg ggctggtctt
    18721 cgtggtagac aacttcactg accagtcctg ccgcggcatt ttccgtagcg gtgcgcgcag
    18781 cgttgtgggt agtggtagga aatgacgaag aacgatttgc ataacctgaa gtgtacataa
    18841 tcaatccagc cctgtgagtt actgtatatt catacagtac tcctgtggcg atgaaagatc
    18901 aactctattt tcggaaactg tctcgcaatt tttattctta gtggcgtcaa aaataaaaat
    18961 catcttgctc gcggagtata agttgcctat tttcgtcatt aacggatccg ttactgcaaa
    19021 tcattctttt actttatgat ttaaaaggaa ttttatgaga gcactctctt atgacaggat
    19081 ctatgaatcg caagaatatt tggcctcttt ggggacgatc cagtatcgat ctttattcgg
    19141 tagctatagt ctgactgtgg aggataccgt ctttgcgatg gtggctaatg gcgagcttta
    19201 tctccgcgcc tgtgaagaaa gcgtacccta ctgtgtgaag catccccccg cctggctcat
    19261 gtttatgaaa tgtggacgtc ccgttatgct caactattac cgggtggatg aaagcctgtg
    19321 gcgcgatcag cagcagctgg tacgtttatc gaagtattct cttgacgcgg caatgaagga
    19381 aaaacacagc cgtattttac agcacagact caaagatctc cccaatatga ccttccatct
    19441 ggaaacattg ctcaatgagt cagggataaa ggacgaaaat atgttacgca tactgggcgc
    19501 gaaaatgtgc tggttaaggt tgcgacaaag caatcccttg ctgacggtga aagttttgta
    19561 tgccctggaa ggcgcaattg tcggcgtaca tgaagcggcg ctcccggcga gtcgtcgcca
    19621 ggagcttgcc gactgggctc attcgcttac ggctgggtaa ttaatgtaga agtcggcggt
    19681 gaaatttgcc gttgcaagcg tccaatctcg ggcagtaagg caatgagcaa accaatttgt
    19741 tgaacaacca gaggttcttt gctgtccgga cgtgtttcca gcgactgaac tcgctgcttt
    19801 aaaccctcca gcgcctggtg tacgcgctgt tcgtcttctg gctgatgatg aagcgcatca
    19861 tcaacgtagc agaccgcgtc atccagaagc cccaacacgt ccggattgct gagcttttcg
    19921 cggtgcgcgc cgagggcgga gatatagctg gtaaaagtgt gattgaggca aagcagcctg
    19981 aacgccgcct cccgggtttc agccgtgacg tcgggttcgc tcgacatatt agaaaccacg
    20041 gatgccagtt ctgcatcgcg gttgtgcgcg tcgcgtctgg caatgcgata ggccaggcgg
    20101 ttatcccgtc cctgatgata ttgctcaagg atcgcatcaa ggtagcggca attagcatcg
    20161 gtggcgcgct ggagtacccg gggaaggttg cgaaagcgcc agtccggcca aataaagctg
    20221 accgcagccc aggcgatagc gcagccaatt aacgtgtcga tgacgcgcgg taacgctacc
    20281 tcgaagcctt cgcccaggag gttaaagcag agtaatacca gcagggtgat gaacatcgtc
    20341 gcatgggcat actgcacatt acggaatgcg aagaaaagca cgccggtaat caccagcaga
    20401 actaactgtc cttcaagcga agggacaaac cataaaatcg gcaggccgat cgcaacgcct
    20461 accaacgtac cgataatcct gagcgcaagg cgatggcggg tcgcgttata gttaggctga
    20521 caaacgaaca ggctggtgag caatatccag tacccgtggc gcatcccggt aatttggatg
    20581 agagcataac cgatgcacaa taccagcgac atgcgtaccg catggcgaaa gagagcggac
    20641 tccggggtaa aattacggct cagacgcagc cagatgtcgc taaacccgtg caggctatcg
    20701 tcagccaact ggttttctga ctcattgcgc ggcattgcct gggcctgctc cgactcgatc
    20761 gtcgccagtt gcgcatcaat agcgcgtagg ttggttaata agaatccaag cgtattcagc
    20821 agctctaaag aagcgccgct ggcgcgcata cgttcaagcg cggcgtcaat gtgggtaaag
    20881 acgcgttcaa agcgcggatc atgctggtac ggcgtacgca gtaagataca gcgcgccagc
    20941 tgcgtacagg cctgcgcctg catcgacatc agacgttgaa agcggaacat gacgtcgcta
    21001 tggcgaaaat aatcgcgcag cgtctggtat tgaatatgcg aagaactggc gcgttcatga
    21061 atatcctgcg ccacaaaata gtaatggaga gtgcggcgcg taccgcgttg accgcgatcg
    21121 ccgcgcaggc gagtcaacaa cgacactttc gtttggttca gcgtcgccat taactgcccg
    21181 ttcgctaacg ctaaatcata gagcggcgcc tggctttcat cttcaatatc aggatcaaac
    21241 agacgtgatt tcagttccag atagtgcgcc aactgttcgt aactgcgtgc cagattatcc
    21301 tgcaacggac ggatcggaaa tagcagatgc ccggttagcg tcagtaggtt ataccatact
    21361 gcgcctgcca gcaggagcag tggttgctga taccagtgat cgtataaaaa agcgcccagc
    21421 atcgtataaa tcgcaatgag taacgcgccg aacgcgatgg tggcatagcg ttgccctagt
    21481 cctcccaaca gaataaatcc gctggtggat aacgttaagc ccaacgcaaa tagccacggc
    21541 cagggaaaga gcagctccac agaagccgac gcgataaaaa agcaaattaa ggtaatgatt
    21601 aaattacgca agcgtccggc aaggcggtcg tcgagatcgg ttagcgccgc ggcaaccata
    21661 ccgagcgtga gcgggatggt cagtttgacg tcgcccagcc accagggcag ggcggtggtg
    21721 ccgcacagag cgataaaaat gcggatgtaa tacagccagg tactgttcca ggtataacgg
    21781 cgaatcaacg gacttaacat aaaggctatt tgtcccgatc attcaaaacg gcggcgcgcg
    21841 ttagcttctc gcgcggcgcg agcggtttct acagagacga cgcggcgacc gacaggccaa
    21901 agcgcaatcg cggcaatttt aaagttcgca ataccgacag gtatcccgat gatagtgaca
    21961 cactgcgcga taccggaggc aatgtgcatc aggcatagcc accagccgaa aaaaagtaac
    22021 cagaaaatat tcagcaaggt accgccagta ttcattaata cgctttttgc cgccggatta
    22081 agttcgtcaa cgtgaatggc ttcattaccg taagggaaca gggacagttt ggttatctcc
    22141 cagcaggagc gggtcaacgg cagggtaaaa ataagcacaa tactgaccag cgtcgccagc
    22201 agccaggcca gcgtagtggc aaagccgccc agtacaaagt ttaaaatatt cagaacggta
    22261 cgcataaacc ctcagttcat tccggttttc tattactgcg ggcaattgta acgttttttt
    22321 agactggagc acgttttctc tggcggttac actgataagc acatctttac gtctggattc
    22381 gctgagtcat ggaactgaaa gcaacttctc ttggaaaacg tctggcgcaa cacccgtatg
    22441 atcgtgccgt gatcctcaat gctggggtga aagtgtctgg cgacaggcat gaatatctta
    22501 ttctattcaa tcagttattg gcgattcact gtaagcgtgg gctggtatgg ggcgagctgg
    22561 agtttgtcct cccggaggat aaagtcgtgc gtttgcacgg taccgagtgg tcggaaaccc
    22621 agcaattcca tcgctatctg gacgcgcact ggcgtcgctg gagccaggag atgagtgatg
    22681 tcgccgcgca ggcattacag gagcaatggg cgcgtattag tgagcgaacg ggcggaaacc
    22741 aatggcttac ccgtgaacac gttcgtgggc tggaacacga aattcgccag acgtttgccg
    22801 ccttaccgct gccggtctca cgtctggagg agtttgctca ctgtcgcgag atatggcgta
    22861 agtgtctggc atggttacag gatagcgagg gaagtcggca gcagcataat caggcgtatg
    22921 ctgatgccat gctggaagcg catgccgact tttttacgca gatagaatct tctccgctta
    22981 atccttccca ggccagggcg gtggttaacg gcgaatcatc gttactggta ctggcgggcg
    23041 cgggaagcgg taagacctcg gtgctggtgg cgcgcgcggg ttggctgttg gcgcgcgggc
    23101 aagccgatgc ggggcaaatt cttttactgg cgtttggtcg caaggcggca gaagagatgg
    23161 atgagcgtat ccgcgagcgc ttacatacgg aagagattac tgcccgtacg ttccattcgc
    23221 tggcgctgta tattattcag caaggcagta aaaaagcgcc ggttgtcagt aagctggaaa
    23281 gtgacgccac cgcgcggcat cagctatttc tgcacacctg gcgtcagcag tgtagcgaga
    23341 aaaaagcgca ggccaaaggc tggcgtcagt ggctggaaga ggagatgcag tgggtagtgc
    23401 cggaaggtaa tttctgggac gatgagacat tgcagcggcg tctggcccct cgcctggatc
    23461 gttgggtcag tttgatgcgt atgcacggcg gcgcgcaggc agaaatgatc gctggcgcgc
    23521 cagaggagtg ccgcgagctg tttggcaaac gcattaagtt gatggcgccg ctgctgaagg
    23581 cctggaaaag cgcattgaaa gcggaaaatg ccgttgattt ctccgggctg atccatcagg
    23641 caatggtgat cctcgaaaaa gggcgtttta ttagcccgtg gaagcatatt ctggtcgatg
    23701 aatttcagga tatttccccg caacgggcgg cgctgttaga ggcgctacgc aagcagaata
    23761 gccagactac gctgtttgcc gttggcgatg actggcaggc gatttaccgt tttagcgggg
    23821 cgcagctctc cttaacgacg gcgtttcatc agacgttcgg cgagggcgag cattgtcacc
    23881 tggacaccac gtaccgtttt aacagtcgga ttggcgatat tgccaatcgc tttgtacagc
    23941 agaatccgca ccaacttaaa aaaccgttaa atagtctgac cccaggcgat aaaaaagcgg
    24001 ttacgttatt ggatgaaagc cagttggacg cgttactgga taaattatcc ggctatgcga
    24061 aggaggatga acgtatcctg gtgctggcgc gctatcacca tctgaaaccc gcgagtctac
    24121 aaaaagcggc gactcgctgg ccgaagttac agatagattt catgactatc catgccagca
    24181 aaggccaaca ggccgattac gtgattcttg tcggattgca ggagggtaac gacggtttcc
    24241 ccgccccggc gcgagaatcc attatggaaa gtgcgctttt tcctcaggtt gaggattttc
    24301 cggacgctga agagcggcgt ttgttatatg tggcgttgac gcgcgcgcgt gcgcgggtct
    24361 ggctgctttt caataaagat aatccctcgc gctttgtgga ggcgcttaaa cagctggatg
    24421 tgccggtggc gaggaagccc taaagcgcgg gcggtatagc atcccgcccg cgtagcggtt
    24481 atttcaggcg ctcggccaga taacgcgcat aatccggaat aagaatatct acagcgtcat
    24541 taaaatgcgg ggactggatg ataaagtccg ccgttgagac attagtggcg acagggatat
    24601 tccatacagt ggccagacgc agtagcgctt tgacatcggg gtcgtgcggt accgcgttaa
    24661 gcgggtccca gaagaaaatc aacacgtcga ttttcccttc tgaaatgagc gcgccaacct
    24721 gctggtcgcc gcccatcggg ccgctcagca tcgcattaac gtccataccg gttgcgcgct
    24781 ggatcagatt ccccgtggtg ccggttgcat aaagaacgtg tttttccagc aacggctgat
    24841 ggcgttccac ccagttcatt aacatctgtt tgcagtggtc gtgagcaacc aacgcgatat
    24901 gtttgcgcgt cggcaaggtg cgagtcgtca gttccataat tcgattccgt agttaacctg
    24961 tctacagatt actggaagcg cttgatgctg caagagaaag acaaaaaaat tgcgcgctgg
    25021 gacaactcat atcaagaggg cggctgtttt tccgcccatt gcagaaaatg atggcgtgtc
    25081 tgcgggtcgg ccagtcggaa ccaatatttc agccgctgtt ctgtcagagt ttgtgattgc
    25141 ggcggtacgg tatcaagctc tgagacgtcg gaaagtaatg tgctgtcgtc tgccatcatc
    25201 gtggcgaact gaggaagcga ggcgcgtttc gccgatttat tataacgctc ggtctctatt
    25261 tcgtaatcga ccactttagc cgtagaagta atggccagaa tatcgagttt taccggaatg
    25321 ggcatggcgt cgccgtccaa aagcgccaga cgcggcgccg cgttaaaatg cgaggcttcg
    25381 cgctcgtttt ccagccgcgg gagctgaaaa ttgacctgac ttatcagctg ggtatcgaag
    25441 cttatcacca gcggcggaga aatataaagc cgctcttcat taccgggcag gcggatggtt
    25501 ttttccaccc ggaaaacgag ttgatgcggc ccgttttcca gttcgatgct ctctgcgccg
    25561 cgtaataaag agctggacac ctttttgccg tccagcacca gcagatcaac ctcattagac
    25621 aaacggagcg ttgtggcaaa aacagtcacc ggcaaacaga gagcaaggaa ggtggctagc
    25681 gcgccggttt tcataaggtt ctcctgtcca aaggccgtct ggctaataat gcatcgaaat
    25741 ttttcttaga tcatgtttac taacatatag acatattttg gcgttttgct ctcatacatc
    25801 ggtatgggat gaatggttgc tatgtcaggt ttgtcgtaca ctttgcaaaa cagccaggag
    25861 aaagatgatg aaagagaccg atattgctga tgttttgacg tccactcgca ctatcgcgct
    25921 ggtaggtgcg agcgataaac ccgatcgtcc aagctatcgg gtaatgaaat acctgcttga
    25981 acagggctac catgtgattc cggttgcgcc aaaagtcgcg ggtaagacat tgctggggca
    26041 acaggggtat gccacgctgg cggatattcc cgaaaaagtc gatatggtgg atgtttttcg
    26101 caactctgaa gctgcatggg gcgtcgcgca ggaagctatc gccatcggcg caaaaacgct
    26161 gtggctacag cttggcgtga tcaacgaaca ggcggcggta ctggcgcggg atgcaggcat
    26221 gactgtggtg atggatcgct gcccggcgat tgagatccct cgcctggggc tggcgaaata
    26281 aaagtttaaa tggccggata tcgctctccg gccttttaca tacaatcagt tacgtagtcg
    26341 cggcgcctga agctgcttgc gaatggtacg cgccagttca tccatcgatg gctgttctgg
    26401 atgctcgtcc cgcatttcgc ttcgcaactg ggcctcggcc agataagtat gcactggctg
    26461 accatcatca tcttccatta ccacgtggta ccacggagcg gcgcgaagtt cgtcgttaac
    26521 cgccagttca tcaggcgacg gctcatcaag cgaatattcc gggtcgatat cgacgaccac
    26581 tccgaggtaa cctaacaggg aatggcggac ctgttggccg ataccgaatt tgctggctat
    26641 catagtcacc tcccgggaaa tagataccct ttatatgagg atactattcc acttttcaag
    26701 ttacatgacg cgacaggcaa accctttcag atacagccct tccgggtagg tggcgatcac
    26761 cgggtgatcg gcggcctgac ggaactgctc tataaattgt acatcacgac cggcatctat
    26821 tgcggcatcg gcaatgattt tctgaaataa atcgctggtc atcagtccgg agcaagagaa
    26881 tgtcagcagt atgccgcccg gattgagcag ttgaatcgct aacatgttaa tgtctttata
    26941 gccccggcag gcgcccatta actggctttt attttcgacg aatttgggcg ggtccatgat
    27001 gatgacgtcg aatttttcgc cgtgttcacg gtaagcgcgc agcaacttaa acacgtcgtc
    27061 gcgcacgaat tcggctttgc tcaagtccag ttggttcagt tcaacgtttt gcctggcgat
    27121 atccagcgca tcctgtgagg tatccacgct gacaacctgg cgacaaccac ccattaacgc
    27181 cgacacggca aaaccgccgg tataagagaa gcagttcagt acccgctgat tttctacgta
    27241 gcggcgcgtc accagacgac tgtcgcgctg atcaagataa taaccggttt tgtggccgcc
    27301 ctgtatatcg accagcaatt tcataccgtg ttcttcaatt ggcaaaagcg caggcggcag
    27361 ttcgccagtg accgggcctt gcgtcagcgc catcccttct tttttccgca cggcgacgtc
    27421 gctgcgatcg taaatagcgc aatccggata gcatgtttgc agagcgctaa ttaatgcggc
    27481 gcgttgatat tcggccccgg cgctgagcag ttgcagcacc aaaaaatgac caaaacgatc
    27541 gatagtgacg ccaggcaggc catcggattc accggcgatc agacgatagc tatccagacc
    27601 gtcttttttc gccagccagt cgcgccactg ctgcgcctgg cgcaggcggc gggtgaaaaa
    27661 cgcaatatca atggattctg ttttatcaaa tgtccagacg cgcgcgcgga tctgggaggc
    27721 tggcgaccag gcgccgcgtg ctaaccactt tccctgatgg tcgacgatat cgatagtttc
    27781 accgaggttg gctttgcctt ccagacggga tacggcgccg gaaaagaccc atgggtggcg
    27841 gcggagtaaa gatttttctc gccctttgct gaggactaaa cggggatatt gcggaaatgt
    27901 agattcagtc atgcggagta acctctcaca aacagtgacg cgagccggat gatagttcca
    27961 gccagggacc gtgaaaacga aatggcgcgt agggtagcac agatgagagg ggcaatcacc
    28021 agcgtatggc ggtgagcgtt tctgcacaaa atagaatcgt aaaggcacag tttcttcagc
    28081 ggacgctttt tatagtgtta tttctttaca tgaagaagga aatacaatga aaacagtctt
    28141 ctctttgacc gcagccgcaa tgatggcatt gagtggcggc gtatctgccg cgtcggcgtt
    28201 tagcctcagt agcgcggata ttccggcaga ttttcgttta acgcaacagc acgtctttaa
    28261 aggatttggt tgtagcggag aaaatatttc gccgcagctg agctggcgca atccgcctgc
    28321 cggaaccaaa agctacgcta ttaccgtctt cgatcctgat gctcccaccg gaagcggctg
    28381 gtggcactgg acgatggtga atattcctgc gcagattcac gacctgccga cgggggctga
    28441 taaaaaacgt tacccgctgg agtggtgcag ggacggaatg atttcggtta tgctggcttt
    28501 ggcggcgcct gtccgccgcc gggcgatgag cctcatcgct atcagtttac tgtgtgggcg
    28561 ctgaatacgg caacactgcc gctcgacagt gagtcgagtg gcgcgttggt agggtttatg
    28621 cttaacgcgc atgtgattgc gaaagcacaa ttcacggcca catacggaag gtaaaacaga
    28681 ggacggcacg gtgcaggaga tgcatattcg acatcaggat cttacgacgg cagaggtgcg
    28741 ttccagtcat ctgcaccgtt tgcatcgtgt tacgcttttt tccgccgcga tctgccatat
    28801 tacgcagggc agtaaagtca tcattcagga tgatagccgc cttgtcgccg ggcctggcga
    28861 gttaattatt attccggcga acacgccgct ggagatt
//
LOCUS       DAJVSD010000028        28066 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.028, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000028 DAJVSD010000000
VERSION     DAJVSD010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 28066)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28066)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28066
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.028"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(20..95)
                     /locus_tag="OQP62_001045"
     tRNA            complement(20..95)
                     /locus_tag="OQP62_001045"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(60..62),aa:His,seq:gtg)
     gene            complement(150..226)
                     /locus_tag="OQP62_001046"
     tRNA            complement(150..226)
                     /locus_tag="OQP62_001046"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(190..192),aa:Arg,seq:ccg)
     gene            complement(329..1714)
                     /locus_tag="OQP62_001047"
     CDS             complement(329..1714)
                     /locus_tag="OQP62_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1720655.1"
                     /translation="MAEKKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS
                     VLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMA
                     VGISEITAIGVYVQFWFPEMAQWIPALIAVGLVALANLAAVRLYGEIEFWFAMIKVTT
                     IIVMIIIGLGVIFFGFGNGGQAIGFGNLTEHGGFFAGGWKGFLTALCIVVASYQGVEL
                     IGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFA
                     KIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAVAKVSRHGVPVA
                     GVALSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKEA
                     IADHPFRSIMFPWANYLTMAFLVCVLIGMYFNEDTRMSLFVGVIFLLAVTLVYKVFGL
                     NRHGTAHKVGE"
     gene            complement(1921..2661)
                     /gene="rffM"
                     /locus_tag="OQP62_001048"
     CDS             complement(1921..2661)
                     /gene="rffM"
                     /locus_tag="OQP62_001048"
                     /EC_number="2.4.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     N-acetylmannosaminouronosyltransferase"
                     /protein_id="HCS1720656.1"
                     /translation="MTNNAAAPLYSLRGLPLIGWRDMSHALNYLFADGQLKQGTLVAI
                     NAEKLLTAEDNPEVRALIAAAEFKYADGISVVRSIRKKFPQAQVSRVAGADLWEALMA
                     RAGKEGTPVFFVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFARIHASG
                     AKIVTVAMGSPKQELLMRDCREVHPHALYMGVGGTYDVFTGHVKRAPKIWQNLGLEWL
                     YRLLSQPKRITRQMRLLRYLRWHYTGDL"
     gene            complement(2658..4016)
                     /gene="wzyE"
                     /locus_tag="OQP62_001049"
     CDS             complement(2658..4016)
                     /gene="wzyE"
                     /locus_tag="OQP62_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECA oligosaccharide polymerase"
                     /protein_id="HCS1720657.1"
                     /translation="MSLMQFSGLLVVWLLSTLFIATLTWFEFRRVRFNFNVFFSLLFL
                     LTFFFGFPLTSVLVFRFDVGVAPPEILLQALLSAACFYGVYYVTYKTRLRKRVVDVPR
                     KPLFTMNRVETHLTWVILMGIALVSVAIFFMHNGFLLFRLHSYSQIFSSEVSGVALKR
                     FFYFFIPAMLVVYFLRQDSKAWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIG
                     IIRGWISLWMLAAAGVLGIVGMFWLALKRYGLNVSGDEAFYTFLYLTRDTFSPWENLA
                     LLLQNYHNIDFQGLAPIVRDFYVFIPTWLWPGRPSIVLNSANYFTWEVLNNHSGLAIS
                     PTLIGSLVVMGGALFIPLGAIVVGLIIKWFDWLYELGNREPNRYKAAILHSFCFGAIF
                     NMIVLAREGLDSFVSRVVFFLVVFGASLLVAKLLFWLFDSAGLIHKRTTSLPQAQMDG
                     KL"
     gene            complement(4013..5092)
                     /locus_tag="OQP62_001050"
     CDS             complement(4013..5092)
                     /locus_tag="OQP62_001050"
                     /EC_number="2.4.1.325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDP-N-acetylfucosamine:lipid II
                     N-acetylfucosaminyltransferase"
                     /protein_id="HCS1720658.1"
                     /translation="MTVLIHVLGSDIPHHNHTVLRFFNDTLAATGEHAREFMVAGEDN
                     GFTESCPALSLRFYGSKKALAQAVIAKAKANRRQRFFFHGQFNISLWLALLSGGIKPA
                     QFYWHIWGADLYEVSNGLKFRLFYPLRRIAQGRVGGVFATRGDLSYFARQHPGVRGEL
                     LYFPTRMDPSLNAMAKERQRAGKLTILVGNSGDRSNQHIAALRAVYQQFGDTVNVVVP
                     MGYPANNQAYIDEVRQAGLALFSAENLQILSEKMEFDAYLALLRQCDLGYFIFARQQG
                     IGTLCLLIQADIPCVLNRDNPFWQDMAEQHLPVLFTTDDLNEQVVREAQRQLASVDKS
                     GITFFSPNYLQPWHNALRIAAGEAE"
     gene            complement(5089..6339)
                     /gene="wzxE"
                     /locus_tag="OQP62_001051"
     CDS             complement(5089..6339)
                     /gene="wzxE"
                     /locus_tag="OQP62_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid III flippase WzxE"
                     /protein_id="HCS1720659.1"
                     /translation="MSLAKASLWTAVSTLVKIGAGLLVVKLLAVSFGPSGVGQAGNFR
                     QMITVLGVLAGAGIFNGVTKLVAQHHDDPAQLRTVVGTSSAMVLGFSTLLALVFLLAA
                     APISQGLFGHTDYQGLVRLVALVQMGIAWANLLLALMKGFRDASGNALSLIVGSFLGV
                     AAWYLCYRVGGYEGALLGLALVPALVVVPAGIILIKRGTVPLRYLKPSWDNGLAGQLS
                     KFTLMALITSVTMPVAYVMMRNQLAAHYSWSDVGIWQGVSSISDAYLQFITASFSVYL
                     LPTLSRLTEKQDITREVVKALKFVLPAVAAASFTVWLLRDFAIWLLFSAKFTAMRDLF
                     AWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEISQFILLTAFAHWLIPAHGALGAAQ
                     AYMATYIVYFSLCCGVFLLWRRRA"
     gene            complement(6341..7471)
                     /gene="rffA"
                     /locus_tag="OQP62_001052"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
     CDS             complement(6341..7471)
                     /gene="rffA"
                     /locus_tag="OQP62_001052"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /EC_number="2.6.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
                     /protein_id="HCS1720660.1"
                     /translation="MIPFNAPPVVGTELEYMQSAMSSGKLCGDGGFTRRCQQWLEQHF
                     GSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSFTFVSTANAFVLRGAKIVFVDIRP
                     DTMNIDETLIEAAITDKTRAIVPVHYAGVACEMDVIMALADKYNLFVVEDAAQGVMST
                     YKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDRTLIERAEIIREKGTNRSQFFR
                     GQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLSLWQTYYDALTPLARAGR
                     IELPSIPENCGHNAHMFYIKLRDIADRSALINFLKEAEIMAVFHYIPLHDCPAGDKFG
                     EFIGDDVYTTKESERLLRLPLFYNLAPVDQRTVITTLLNYFS"
     gene            complement(7476..8153)
                     /gene="rffC"
                     /locus_tag="OQP62_001053"
                     /gene_synonym="wecD"
     CDS             complement(7476..8153)
                     /gene="rffC"
                     /locus_tag="OQP62_001053"
                     /gene_synonym="wecD"
                     /EC_number="2.3.1.210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxy-D-galactose
                     acyltransferase"
                     /protein_id="HCS1720661.1"
                     /translation="MPVRASIEPLHWENTFFGVNSGIVRIDASAPELTPEALQAWQRV
                     QAKVPAENIAWLSALQSLGFSLVEGEVDFALPVKGHRDQHGAEIAHLTDIPALRQLAG
                     EAFTQSRFRAPWYAPDASARFYAQWIENAVRGTFDHQCLVLRTETGAIRGYVSLRELN
                     DTDVRIGLLAGRGAGAELMQAAICWAQSRGKATLRVATQLGNTAALKRYIQSGANIES
                     TAYWLYR"
     gene            complement(8131..9012)
                     /gene="rfbA"
                     /locus_tag="OQP62_001054"
     CDS             complement(8131..9012)
                     /gene="rfbA"
                     /locus_tag="OQP62_001054"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HCS1720662.1"
                     /translation="MKGIILAGGSGTRLHPITRGVSKQLLPVYDKPMIYYPLSVLMLA
                     GIREILIITTPEDKRDFQRLLGDGAAFGIDLHYAEQPSPDGLAQAFIIGETFLNGEPS
                     CLVLGDNIFFGQGFSPKLRQVAARTEGATVFGYQVMDPERFGVVEFDDDFRALSLEEK
                     PKQPKSNWAVTGLYFYDSKVVEYAKRVKPSGRGELEITSINQMYLEEGKLTVELLGRG
                     FAWLDTGTHDSLIEASTFVQTVEKRQGFKIACLEEIAWRNGWLDDDGLKRAASQLEKT
                     GYGQYLLELLRARPRQY"
     gene            complement(9045..10112)
                     /gene="rffG"
                     /locus_tag="OQP62_001055"
     CDS             complement(9045..10112)
                     /gene="rffG"
                     /locus_tag="OQP62_001055"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HCS1720663.1"
                     /translation="MKRILVTGGAGFIGSAVVRHIIHETADAVVVVDKLTYAGNLMSL
                     ASVAQSDRFAFEKVDICDRASLEQVFQQYQPDSVMHLAAESHVDRSIDGPAAFIETNI
                     VGTYTLLEAARAYWSALDADAKAAFRFHHISTDEVYGDLHTADDFFTETTPYAPSSPY
                     SASKASSDHLVRAWLRTYGLPTLVTNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYG
                     NGQQIRDWLYVEDHARALYHVVTNGAVGETYNIGGHNERKNLDVVRTICALLEELAPQ
                     KPQGVANYHDLITFVDDRPGHDLRYAIDASKIARELGWTPQETFESGMRKTVQWYLAN
                     EAWWKPVQDGSYQGERLGLKR"
     gene            complement(10112..11374)
                     /gene="wecC"
                     /locus_tag="OQP62_001056"
     CDS             complement(10112..11374)
                     /gene="wecC"
                     /locus_tag="OQP62_001056"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HCS1720664.1"
                     /translation="MSFTTISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINR
                     GEIHIVEPALGNVVKMAVEGGFLRATTTPVEADAYLIAVPTPFKGDHDPDMAYVEAAA
                     KSIAPVLKKGALVILESTSPVGATEQMAGWLAGMRPDLTFPQQAGEQADVNIAYCPER
                     VLPGQVMVELIKNDRVIGGMTPVCSARASALYKIFLEGECVVTNSRTAEMCKLTENSF
                     RDVNIAFANELSLICAEQGINVWELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVA
                     QNPQQARLIRTAREVNDGKPHWVVDQVKAAVADCLAATDKRASEVKIACFGLAFKPNI
                     DDLRESPAMGIAQSIARWHSGETLVVEPNIRQLPKKLDGLCTLAKLDAALAAADVLVM
                     LVDHDEFKAIPGDAVHQRYVVDTKGVWR"
     gene            complement(11371..12501)
                     /gene="wecB"
                     /locus_tag="OQP62_001057"
     CDS             complement(11371..12501)
                     /gene="wecB"
                     /locus_tag="OQP62_001057"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HCS1720665.1"
                     /translation="MKVLTVFGTRPEAIKMAPLVHALEKDPHFEAKVCVTAQHREMLD
                     QVLTLFSIVPDYDLNIMQPGQGLTEITCRILERLKPILADFKPDVVLVHGDTTTTIAT
                     SLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFAPTENSRQNLLREN
                     IPDERIFVTGNTVIDALIWVRDRVLTSDTLQAELAEQYPFLNANKKMILVTGHRRESF
                     GQGFEHICQALAEIAAANQNVQIVYPVHLNPNVSEPVNRILGHVENVVLIEPQDYLPF
                     VWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRETTERPEAITAGTVRLIGTDSRRIVA
                     EVMRLLHDENEYQTMSRAHNPYGDGQSCARILQALKSYRVSL"
     gene            complement(12557..13603)
                     /gene="wzzE"
                     /locus_tag="OQP62_001058"
     CDS             complement(12557..13603)
                     /gene="wzzE"
                     /locus_tag="OQP62_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECA polysaccharide chain length modulation
                     protein"
                     /protein_id="HCS1720666.1"
                     /translation="MTQPLPGARAVSAENELDIRGLFRTLWAGKFWIIGIGLLFALIA
                     LAYTFFARQEWSATAITDRPTVNMLGGYYSQQQFLRNLDIKTDPASSDKPSVMDEAYK
                     EFIMQLASWDTRRDFWLQTDYYKQRMVGNSKADAVMLDELINNIQFTPGDFTRAINDN
                     VRLIAETAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTVQMKAQVKRQEEVAKA
                     IYSRRVNSIEQALKIAEQHNISRSATDVPADELPDSELFLLGRPMLQARLENLQAVGP
                     AFDLDYFQNRAMLNTLNVGPTLDPRFQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGA
                     LIGAGVALTRRRTI"
     gene            complement(13615..14718)
                     /gene="wecA"
                     /locus_tag="OQP62_001059"
     CDS             complement(13615..14718)
                     /gene="wecA"
                     /locus_tag="OQP62_001059"
                     /EC_number="2.7.8.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--undecaprenyl-phosphate
                     N-acetylglucosaminephosphotransferase"
                     /protein_id="HCS1720667.1"
                     /translation="MKLLTALSELISIFLFTTIFIFLARKVAIKIGLVDKPNFRKRHQ
                     GVIPLVGGISVFAGICFMFGLSDYYIPHLSLYLICAGVLVFVGAMDDRFDISVKIRAV
                     VQAVIAVVMMVIAKLHLGSLGYIFGPWELVLGPFGYFLTLFAVWAAINAFNMVDGIDG
                     LLGGLSSVSFAAMGLILWFDGQTSLAMWCFAMIAAILPYIMLNLGILGRRYKVFMGDA
                     GSTLIGFTVIWLLLETTQGKTHSISPVTALWIIAIPLMDMVAIMYRRLRKGMSPFSPD
                     RQHIHHLVMRAGFTSRQAFVLITLAAAILAGVGVTAEYSHFVPEWVMLVLFLLAFFLY
                     GYCIKRAWKVARFIKRVKRRLRRQRKNRPNLTK"
     gene            complement(14948..16207)
                     /gene="rho"
                     /locus_tag="OQP62_001060"
     CDS             complement(14948..16207)
                     /gene="rho"
                     /locus_tag="OQP62_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HCS1720668.1"
                     /translation="MNLTELKNTPVSELITLGESMGLENLARMRKQDIIFAILKQHAK
                     SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR
                     PPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR
                     VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE
                     MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT
                     VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEE
                     FKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGE
                     IDAMEFLINKLAMTKTNDDFFEMMKRS"
     gene            complement(16295..16429)
                     /locus_tag="OQP62_001061"
     CDS             complement(16295..16429)
                     /locus_tag="OQP62_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rho operon leader peptide"
                     /protein_id="HCS1720669.1"
                     /translation="MWFYPSLPVFSRTRSGKIPGSSLIPSCRFSSAYFPVTRQRTDMS
                     "
     gene            complement(16626..16955)
                     /gene="trxA"
                     /locus_tag="OQP62_001062"
     CDS             complement(16626..16955)
                     /gene="trxA"
                     /locus_tag="OQP62_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017375425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxA"
                     /protein_id="HCS1720670.1"
                     /translation="MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILD
                     EIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE
                     FLDANLA"
     gene            17099..18364
                     /gene="rhlB"
                     /locus_tag="OQP62_001063"
     CDS             17099..18364
                     /gene="rhlB"
                     /locus_tag="OQP62_001063"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="HCS1720671.1"
                     /translation="MSKTHLTEQKFSDFALHPQVVEALEKKGFYNCTPIQALALPLTL
                     AGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHA
                     DAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQ
                     VVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNMLFSATLSYRVRELAFEQMNNAEY
                     VEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEDIWGHL
                     AADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLP
                     DDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIESYIGHSIPVSKYNPEALMND
                     LPKPLRLTRSRPGNGPRRAGAPRNRRRSG"
     gene            18483..19964
                     /gene="gppA"
                     /locus_tag="OQP62_001064"
     CDS             18483..19964
                     /gene="gppA"
                     /locus_tag="OQP62_001064"
                     /EC_number="3.6.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanosine-5'-triphosphate,3'-diphosphate
                     diphosphatase"
                     /protein_id="HCS1720672.1"
                     /translation="MNSTSLYAAIDLGSNSFHMLVVREAAGSIQTLTRIKRKVRLAAG
                     LNNDNHLSAEAMERGWQCLRLFAERLQDIPQPQIRVVATATLRLAVNAGEFIAKAQTI
                     LGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQTTSLFSLS
                     MGCVTWLERYFSDRNLAQENFDDAEKAARDVLRPVADELRFHGWKVCVGASGTVQALQ
                     EIMMAQGMDERITLAKLQQLKQRAIQCGRLEELEIEGLTLERALVFPSGLAILIAIFT
                     ELNIQSMTLAGGALREGLVYGMLHLAVDQDIRSRTLRNIQRRFIVDTDQANRVAKLAD
                     NFLKQVENAWHIEPISRELLLSACQLHEIGLSVDFKQAPYHAAYLVRHLDLPGYTPAQ
                     KKLLATLLLNQTNPVDLSSLHQQNAVPPRVAEQLCRLLRLAILFAGRRRDDLVPEITL
                     QALNENLTLTLPGDWLAHHPLGKELIDQESQWQSYVHWPLDVR"
     gene            complement(20004..22028)
                     /gene="rep"
                     /locus_tag="OQP62_001065"
     CDS             complement(20004..22028)
                     /gene="rep"
                     /locus_tag="OQP62_001065"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HCS1720673.1"
                     /translation="MRLNPGQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCG
                     YQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMK
                     SNFSLFDDTDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGER
                     DRIFAHCYGLYDAHMKACNVLDFDDLILLPTLLLQRNDEVRERWQNKIRYLLVDEYQD
                     TNTSQYELVKLLVGQRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALQVIKLEQN
                     YRSSGRILKAANILIANNPHVFEKRLFSELGYGAELKVLSANNEEHEAERVTGELIAH
                     HFVNKTQYKDYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRV
                     LTNPDDDSAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGY
                     DSLTRFTHWLGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQL
                     FSWMTEMLEGNELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFL
                     YVYMVGMEEGFLPHQSSIDEDNIEEERRLAYVGITRAQKELTFTLCKERRQYGELVRP
                     EPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLKAMMAAKRAKS"
     gene            complement(22128..22856)
                     /locus_tag="OQP62_001066"
     CDS             complement(22128..22856)
                     /locus_tag="OQP62_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016506088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HCS1720674.1"
                     /translation="MDFFSINNVMVNIPLGEGGYALSWIEAIGTVFGLLCIWCASREK
                     IINYLFGLINVTLFAAIFFQIQLYASLLLQVFFFAANIYGWYAWSRQNDAREAALKVR
                     WLSCQQTWRLGGICIISILLMTWFIDPVFAMLTRVMLALLQTVGMQVAMPELQPDAFP
                     FWDSTMLVLSIAAMVLMTRKYVENWLLWVIIDVISVVIYAVQGVYAMSLEYVLLTVIA
                     LMGSYSWIKSAQRNGYTSLAARAC"
     gene            complement(22856..23599)
                     /locus_tag="OQP62_001067"
     CDS             complement(22856..23599)
                     /locus_tag="OQP62_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001182423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside phosphorylase"
                     /protein_id="HCS1720675.1"
                     /translation="MQPHIRLNTSMTRAKYALLPGDPGRVDRIARFLDKAEILGQNRE
                     FRAARGWYQGVEIVVLSTGIGGPSTAIAIEELRQVGVNTLIRIGSCGALQDSLALGDV
                     IIAHGAVADDGASKTYAPASYPACADPYLTATLIQQAKQMNISAVCGLVRSHDSFYTD
                     REAELDAEWSARGVLGADMETAALMVVGALRGLRTASLLNVVVAHSGCLESSINHYVQ
                     QETLCQQGEERQISLALQAIYFDSLQGEQ"
     gene            complement(23627..24328)
                     /locus_tag="OQP62_001068"
                     /pseudo
     CDS             complement(23627..24328)
                     /locus_tag="OQP62_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004127355.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
     gene            24522..24803
                     /gene="ppiC"
                     /locus_tag="OQP62_001069"
     CDS             24522..24803
                     /gene="ppiC"
                     /locus_tag="OQP62_001069"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PpiC"
                     /protein_id="HCS1720676.1"
                     /translation="MAKMAAALHILVKEEKLALDLLEQIKNGGDFEKLAKKHSICPSG
                     KKGGHLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRK"
     gene            complement(24895..26370)
                     /gene="ilvC"
                     /locus_tag="OQP62_001070"
     CDS             complement(24895..26370)
                     /gene="ilvC"
                     /locus_tag="OQP62_001070"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HCS1720677.1"
                     /translation="MANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVG
                     CGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLV
                     VNLTPDKQHSDVVRSVQPLMKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTE
                     VREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDL
                     MGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLIQFGWETITEALKQGGITLMMDR
                     LSNPAKLRAYALSEQLKEIMAPLFQKHMDDIISGEFSSGMMADWANDDKKLLTWREET
                     GKTAFETAPQFEGKIGEQEYFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLH
                     ELPLIANTIARKRLYEMNVVISDTAEYGNYLFSYACVPLLKPFMAELQPGDLGSAIPE
                     GAVDNAQLRDVNDAIRSHAIEQVGKKLRGYMTDMKRIAVAG"
     gene            26535..27422
                     /gene="ilvY"
                     /locus_tag="OQP62_001071"
     CDS             26535..27422
                     /gene="ilvY"
                     /locus_tag="OQP62_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator IlvY"
                     /protein_id="HCS1720678.1"
                     /translation="MDLRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLG
                     QPLFVRDNRTVTLTEAGEELRVFAQQTLLQYQQLRHTLDQQGPSLSGELHIFCSVTAA
                     YSHLPPILDRFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSM
                     LENLAVVLIAPALPCPVRNQVSVDKPDWSTVPFIMADQGPVRRRIELWFRRHKISNPQ
                     IYATVGGHEAMVSMVALGCGVALLPEVVLENSPEPVRNRVMILERSDEKTPFELGVCA
                     QKKRLHEPLIDAFWKILPN"
     gene            complement(27425..27766)
                     /locus_tag="OQP62_001072"
     CDS             complement(27425..27766)
                     /locus_tag="OQP62_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HCS1720679.1"
                     /translation="MIAKTDSDFRHVTPSGGNVFADLGFHKQDAEKFYADSLNEIENT
                     LAIKQQLMEEITLWITQNQMKQAEVATVLHISRPRVSDVVNKKCSKFTIDALVNMLSR
                     IGKPVRVMVGP"
     gene            complement(27763..>28066)
                     /locus_tag="OQP62_001073"
     CDS             complement(27763..>28066)
                     /locus_tag="OQP62_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HCS1720680.1"
                     /translation="EDLLAFPITVRKAVGYQLHKIQYGIEPDDWKPFSEIGAGVNEIR
                     IRNNNGIYRVMYVANFAEALYVLHSFQKQTQQTSQHDKNIARTRYNRVVQQRRNSL"
BASE COUNT         6902 a         7812 c         7106 g         6246 t
ORIGIN      
        1 tttcacaact ctatattaat ggggtggcta atgggattcg aacccacgac aactggaatc
       61 acaatccagg gctctaccaa ctgagctata gccaccactg aaacttttta cgcggtatta
      121 aaccaccgca gctcaagcac ctaaataaat ggtacgcccg acaggattcg aacctgagac
      181 ctctgcctcc ggagggcagc gctctatcca gctgagctac gggcgcttag cgccgttgcg
      241 ggggtggata atacggactt cacaccccgc tgtccagtgc ctttttaaat aaaatgcgcg
      301 tttggttatg ctttgcgcat tttggcgctt attcccccac cttgtgggcg gttccgtgac
      361 gattcaggcc gaaaactttg tagaccagcg tgacggccag caggaagatg acgccgacaa
      421 acagcgacat gcgcgtatct tcattaaagt acatgccgat taaaacgcaa accagaaacg
      481 ccatcgtcaa atagttcgcc cacggaaaca taatggaacg aaaaggatga tccgcaatcg
      541 cttctttatg cgcccgacga aagcgcagtt ggctaatcag aatgacaaac cacggcacca
      601 tccccggcag tacgctggcg ctataaacgt aaacaaagac gcgctgcgga ttggggataa
      661 tgtagttcag gcaagaacct accagcaaaa tcaaaataga gagcgccacg cccgcgaccg
      721 gcacgccgtg gcgagagacc ttcgcaactg ccgccggcag ttgacggttt ttcgccagcg
      781 cgtaaagcat acgcccacag ctatacattc cgctgttaca gccggagagc gccgccgtca
      841 gcacgacaaa gttgataatg cctgccgcgg cggtgatgcc gattttcgcg aaggtgagca
      901 caaaggggct gccgttgctg ccaatctcat tccacgggaa aatggtgacg atcacgaaaa
      961 tcgcgccaac ataaaaaatc aggatacgcc acagcacttt acccaccgcg ctacgcaacg
     1021 tcacctgcgg attcttcgct tcaccggcgg taataccgat caactcaacc ccttgataag
     1081 aggccaccac gatacataat gcggtcagaa agcctttcca gccgccggca aaaaagccgc
     1141 catgctcggt cagattacca aagccaatcg cctggccgcc gttaccaaag ccgaagaaaa
     1201 tcacccccag gccgatgatg atcatcacaa taatcgtggt gactttgatc atcgcaaacc
     1261 agaactcgat ttcaccatac aggcgcaccg cagccagatt cgccaacgcg accagtccga
     1321 cggcaatcag cgccggtatc cactgcgcca tctccggaaa ccagaactgg acgtagaccc
     1381 caatggcggt aatttccgag atcccgaccg ccatccacat aaaccagtat gaccaggcgg
     1441 taagatagcc aaaaaaagga ctcatatacc ggtgggcgta cacggcaaag gagccggtaa
     1501 caggttccag aaagagcatc tcccccatcg aacgcatgat gaaaaagacg aacaatccgg
     1561 cgatgatata cgccagcagc actgacgggc ccgcccattt cagcgtactg gcggcgccca
     1621 taaagagtcc gacgccgatg gtgcccccga gggcaatcaa ttcaatatga cgagcttcca
     1681 gcccacgctg tagctccggt tttttctctg ccataaatcc tcatgtcgtg tttgcaacgg
     1741 ttccggtagt accggttatt gttatgggta catcgattgt tgcgaatatt ttcttaaatt
     1801 tggacaaatg gcaaatgaag cattaaaaaa atgcgcttat tgtgtaagaa agcatcgatt
     1861 atgttgtaaa tgagcagagc cataagcaca gtccgctgct caagtcatca gaagggagaa
     1921 tcagagatcg ccagtatagt gccagcgaag atagcgcagc agacgcatct ggcgggtaat
     1981 acgcttcggt tgcgaaagca gacgatacaa ccactccagc cccaggttct gccatatttt
     2041 tggggcgcgt ttgacgtgac cggtaaacac atcataggta ccgcccaccc ccatatatag
     2101 cgcatgggga tgcacttccc gacaatcgcg catgagtaat tcctgttttg gcgatcccat
     2161 cgcgacggtg acaattttcg cgccgctggc atggatacgc gcaaatagcg cctgacgctg
     2221 ctccggcgta aagtaaccgt cctggctacc cacaatattg acgttccact gcgtccgcag
     2281 ttttgcttcc gtctgcgcca gcacctcagg cttgccgccg acaaaaaata ccggcgtgcc
     2341 ttctttcccc gcgcgcgcca ttaacgcttc ccaaaggtcg gcgccagcca cgcgagaaac
     2401 ctgcgcctgc ggaaattttt tacgtattga acgcaccacg ctgatgccat cggcatattt
     2461 aaattccgcc gctgctatca acgcgcggac ttccggatta tcttccgccg tcagcagctt
     2521 ttcggcgttg atcgccacca acgtgccttg cttcagttga ccatcggcaa acagataatt
     2581 cagcgcatgt gacatgtcgc gccagccaat cagaggtaat ccacgcagcg agtaaagggg
     2641 cgcagcggca ttattggtca tagttttcca tccatctgtg cctgagggag cgaagttgta
     2701 cgtttatgaa tcagtccggc gctatcaaat aaccagaaca gaagtttagc gaccagcagg
     2761 ctggcgccaa aaaccaccag gaagaaaacc acgcgcgaaa caaacgaatc cagcccttct
     2821 cgcgccagca caatcatatt aaagatggcg ccaaagcaga aactgtgcag aatcgccgcc
     2881 ttatagcgat tgggttcccg gttacccagt tcatacagcc agtcgaacca tttgataatc
     2941 agcccgacga cgatcgcgcc gagcggaata aacagtgccc cgcccatgac caccagcgat
     3001 ccgataagcg ttggcgatat cgccaggcca gaatggttgt tcaggacttc ccaggtgaag
     3061 taattcgcag aattcagcac gatactgggt cgtcccggcc ataaccaggt aggaataaag
     3121 acgtagaaat cacgcacgat aggggccagc ccctgaaaat cgatattgtg gtaattttgc
     3181 aacagcagcg ccagattctc ccacggcgaa aaggtatcgc gcgtcagata aagaaacgta
     3241 tagaacgcct catcgccgct cacatttaat ccgtagcgtt tgagcgccag ccagaacata
     3301 ccgacaatcc ccagcacgcc cgccgctgcc agcatccaca ggctgatcca gccccgaata
     3361 atgccgataa acaggaagat agcaaacgca ataatgatgt tggcgcgcgt gccgccgaca
     3421 atcatgtagg tcaacagacc aaacgcgacg gtgctcacca gaaagaacag ccacgctttg
     3481 ctgtcctggc gcaggaaata gaccaccagc atcgccggaa tgaagaaata gaagaaccgt
     3541 tttaacgcca cgccggaaac ttcgctggaa aagatctggc tgtaggagtg tagtcggaac
     3601 agcaaaaagc cgttatgcat aaagaaaatc gccacgctca ccagcgcgat gcccatcagg
     3661 atcacccagg taaggtgggt ttccacccgg ttcatggtaa atagcggctt gcgtggtaca
     3721 tccacaacgc gtttgcgtaa acgcgtttta taggtcacgt aatacacgcc gtagaaacag
     3781 gcggcggata atagagcctg caataagatt tccggcggcg cgacgccaac gtcgaaacga
     3841 aataccagca cgctggttag cggaaaacca aaaaagaagg tcaacaaaaa aagcaacgaa
     3901 aagaaaacgt tgaagttaaa acgcacgcgg cggaattcaa accaagtcag cgtggcgata
     3961 aacagcgtag agagcagcca gaccaccagc agcccgctga attgcattaa actcattcgg
     4021 cttctcctgc ggcgattctc aacgcattat gccacggttg caggtagttg gggctaaaga
     4081 aggtgatgcc gcttttatct accgatgcga gctgacgctg cgcctcgcgc acgacctgct
     4141 cattaagatc gtccgtggta aacaggacgg gcagatgctg ttccgccata tcctgccaga
     4201 aaggattgtc gcgattcaac acgcacggga tatcggcctg aattagcaga cacaacgtcc
     4261 cgatcccctg ttggcgggca aaaataaaat aaccgaggtc gcactggcgc aacagcgcaa
     4321 gataggcatc aaattccatt ttttcgctaa gaatttgtag attttcggcg ctaaatagcg
     4381 ccagaccggc ctgacgaacc tcatcaatat aggcctggtt attggctgga tagcccatcg
     4441 gcaccaccac gtttaccgtg tcgccaaact gctgatacac cgcccgtaac gccgcaatat
     4501 gttggttact gcgatcgccg gagttcccta ccaaaatggt caatttcccc gcacgttggc
     4561 gctcttttgc catagcattc agagaaggat ccatgcgcgt cgggaaatag agcaactcgc
     4621 cgcgtacgcc cgggtgctgg cgcgcaaaat agctgagatc gccgcgcgtc gcgaatacgc
     4681 cccctactcg cccctgcgcg atacgacgaa gcgggtagaa aaggcggaat ttcagcccgt
     4741 tggacacttc gtagagatcc gcgccccaga tatgccagta aaactgggct ggcttaatac
     4801 cgccgcttaa cagcgccagc cacagactga tgttgaactg cccgtgaaag aagaatctct
     4861 gtcgacgatt tgctttcgct ttggcgataa ccgcctgcgc cagcgctttc ttactgccat
     4921 aaaaacgaag cgagagtgcc ggacagcttt ccgtgaagcc gttatcttca ccggcaacca
     4981 taaattcgcg cgcgtgctcg cctgtggcgg ccagcgtatc attgaaaaac cgcagcacgg
     5041 tgtggttatg gtgagggata tccgatccca ggacgtgaat cagtacagtc atgctcgcct
     5101 acgccagagt aaaaatacgc cgcaacaaag tgaaaaatag acaatatagg tggccatata
     5161 agcctgtgcc gcacccagcg cgccgtgagc gggaatcagc cagtgagcga acgccgttaa
     5221 cagaatgaac tggctaattt cggccagaat gtaaaatcgc aacgacgctt tggcaatcac
     5281 cagataaccg aaaacatagg cgccgacttt cagcacgtcg cccactaact gccaagcgaa
     5341 cagatcgcgc atcgcggtga atttggcgga aaaaagcagc cagatagcaa aatcgcgcaa
     5401 tagccagacg gtaaaactcg ccgccgcaac cgccggtaaa acaaatttca gcgcttttac
     5461 cacttcacgc gtaatgtcct gtttttccgt caggcgtgag agcgtaggta acaggtaaac
     5521 gctgaaggag gcggtgataa attgtagata ggcatcagaa atactgctca cgccctgcca
     5581 gatcccgaca tcgctccagc tatagtgcgc ggccagttgg tttcgcatca tcacataggc
     5641 gaccggcatc gtaacagagg taatcagcgc catcagggta aatttactga gttgccctgc
     5701 cagaccgttg tcccaggagg gcttgagata gcgtagcggg acggtgccgc gcttaatcag
     5761 tattataccg gctggcacta ccaccagcgc cggcaccagc gccaggccaa gcagagcgcc
     5821 ttcatagccg ccgacacggt agcagagata ccaggcggcg acgcccaaaa agctgccgac
     5881 aattaacgat aaggcattac ccgacgcgtc acgaaagccc ttcattagcg ccagcagcag
     5941 gttcgcccag gcgatcccca tttgtaccag cgcaaccaga cgcaccagcc cttgatagtc
     6001 cgtatgaccg aacagtccct ggctaatcgg cgccgccgcc agcaggaaga ccagcgccag
     6061 cagcgtagag aaccccaata ccatcgcgga ggaggttccc accacggtac gtaactgcgc
     6121 cgggtcatca tgatgttgtg cgacgagttt ggtaacgccg ttaaatatcc cggcgccagc
     6181 caatacgccc agcacggtaa tcatctggcg gaagttaccc gcttgtccga cgcccgacgg
     6241 accgaaagag acggccagta gtttcaccac cagcagtccg gcgccaattt ttaccagcgt
     6301 actgaccgcc gtccacaggg aggctttagc aagcgacata tcaggagaaa taatttagca
     6361 aggtagtaat caccgttcgt tgatcgacgg gcgcaaggtt ataaaacagc ggcagacgca
     6421 acaaacgttc gctctctttt gtggtgtaga catcgtcccc gataaactcg ccgaatttat
     6481 cgcccgccgg gcaatcatgt agcggaatgt aatggaatac cgccatgatt tccgcctctt
     6541 tcaggaaatt aatcagcgcg ctgcgatcgg cgatatcccg cagtttgatg taaaacatgt
     6601 gggcattatg cccgcagttt tccggaatag aaggcagctc aatacgcccg gcgcgcgcca
     6661 gcggcgttaa cgcatcgtag taagtctgcc acagcgacag acgctgttga ttgatacgat
     6721 cggcggcctc cagttgcgcc cacaggtagg cagcctgcag atcggacatc aagtaactgg
     6781 agccgatatc ccgccaggtg tatttgtcca cctgaccacg gaagaactgg ctacggttgg
     6841 tgcctttttc gcggatgatc tccgcgcgtt caatcagcgt acgatcgttg atcagcgtcg
     6901 cgccgccttc gccgccagcg gtgtaatttt tggtttcatg gaagctaaaa cagccgatgt
     6961 gaccgatcgt ccctaacgcg cgccctttgt acgtggacat tacgccctgg gcggcgtcct
     7021 cgacaacgaa cagattatac ttatccgcca gcgccatgat gacgtccatt tcacaagcga
     7081 cgccagcgta gtgtaccggc acgatagcgc gggttttatc agtaatcgcc gcctcaatca
     7141 gcgtttcgtc aatattcatc gtatccggac gaatatcgac aaacacaatt ttcgcgccgc
     7201 gcaggacaaa agcgttagca gtggagacaa acgtaaagct cggcatgatc acttcatcgc
     7261 cgggctgaat atccaacaac agggccgcca tctccaaaga cgcggtacag gaaggcgtca
     7321 gcaacacctt cgcgctgccg aaatgttgct ccagccactg ctggcaacga cgcgtaaagc
     7381 cgccgtcgcc gcacagtttg ccgctgctca ttgcagactg catgtattcg agttcggttc
     7441 ccaccaccgg cggcgcatta aaaggaatca tgttgtcacc tgtataacca gtacgcagtg
     7501 ctttcgatgt tggcaccgct ttgtatgtaa cgtttaagcg cggcggtgtt gcccaactgg
     7561 gtcgccaccc gcaatgttgc tttgccgcga ctctgcgccc aacagatcgc cgcctgcata
     7621 agttccgctc ccgcgccgcg tccggccaac aggccaatgc gcacgtcggt atcattcaat
     7681 tcccgcagcg agacgtaacc acggatagcg cctgtctccg tgcgaagcac caggcattgg
     7741 tgatcaaacg tgccgcgtac cgcattctca atccactggg cgtaaaaacg ggcgctggcg
     7801 tcgggcgcat accacggcgc gcgaaaacga ctctgcgtaa acgcctctcc ggccaactga
     7861 cgcaaagcag gaatgtccgt aagatgtgca atttccgcgc catgctggtc gcgatgccct
     7921 tttaccggca acgcaaaatc cacctcgcct tcaaccaaag agaatcccag cgattgcaac
     7981 gccgacagcc aggcgatgtt ttcagccggc acttttgcct gcacgcgttg ccatgcctgc
     8041 agcgcttctg gcgttaattc gggcgctgag gcatcgatac gcacaatgcc gctattcacg
     8101 ccaaagaacg tattttccca gtgtaacggt tcaatactgg cgcggacggg cacggagcaa
     8161 ctccagtaaa tattggccat agccggtttt ttcaagctga ctggcggcgc gtttcaaacc
     8221 atcatcatcc agccagccgt tgcgccaggc aatctcctcc agacaggcaa ttttgaagcc
     8281 ctggcgcttt tccaccgtct gcacaaaagt gctcgcctca atcagactgt cgtgggtgcc
     8341 cgtatccaac caggcgaagc cgcggcccag cagttcaacg gtcagcttac cttcctccag
     8401 atacatctgg ttgatagaag tgatctccag ctcgccacgc ccggacggtt tcacgcgctt
     8461 cgcatactcg acgaccttgc tgtcatagaa atagaggccg gtgaccgccc agttagattt
     8521 aggctgtttc ggcttttctt ccagcgagag cgcgcgaaaa tcatcgtcaa actccacgac
     8581 gccaaagcgt tccgggtcca tgacctgata gccaaatact gtggcgcctt cggtacgcgc
     8641 cgcgacctga cggagtttgg ggctaaagcc ctgaccaaaa aagatattgt cgcccaatac
     8701 taggcatgag ggttcaccgt tgaggaacgt ttcgccaatg ataaaggcct gcgccagccc
     8761 gtccggactg ggctgctcgg cataatgtaa atcgataccg aatgctgcgc cgtcgcccaa
     8821 caaacgctga aagtcgcgtt tatcctccgg cgtggtgatg atcaagatct cacgaatgcc
     8881 cgccagcatt agcaccgata acggatagta aatcatcggt ttatcgtaga cgggcagaag
     8941 ctgctttgat acgccgcgcg taatgggatg caaccgggta ccggaacctc ccgccagaat
     9001 gatgcctttc attcgtttct cctccaggag taagagcctg ccgtttagcg tttcagacct
     9061 aagcgttcgc cctgataact gccatcctgc acgggtttcc accaggcctc attggcgaga
     9121 taccactgaa cggtttttcg catcccgctt tcgaaggttt cctgcggcgt ccagcccagc
     9181 tcgcgggcga ttttcgacgc gtcgatggca taacgtaagt catggccggg tcgatcgtcg
     9241 acgaaggtaa tcagatcgtg ataattcgcc acaccctgcg gtttttgcgg ggccagttcc
     9301 tccaacagag cgcagatcgt cctgaccaca tccagatttt tacgttcgtt atgaccgccg
     9361 atattatacg tttcgcccac cgcaccgttc gtcaccacgt gatacaacgc acgggcatga
     9421 tcctccacat acagccagtc gcgaatttgc tgaccgttgc catagaccgg caatggttta
     9481 cccgccagcg cgttcagaat catcagcggg atcagttttt ccgggaaatg gtagggcccg
     9541 tagttattag agcagttggt gacaagcgta ggcagaccgt aggtacgtaa ccaggcgcgt
     9601 accagatggt cgctgctggc tttggaggcg gaataagggc tgcttggcgc atatggcgtg
     9661 gtttcggtga agaaatcgtc tgcagtatgc agatcgccat acacttcatc ggtggagata
     9721 tggtggaagc ggaacgccgc tttagcgtcc gcgtcaagcg cggaccagta agcgcgagcg
     9781 gcttccagca aggtgtaagt accaacgata ttcgtttcaa taaacgccgc cgggccgtcg
     9841 atggaacggt ctacatggct ttccgccgcc aggtgcatca cgctatcggg ctgatactgc
     9901 tggaaaactt gctccagtga tgcccgatcg cagatatcca ccttctcaaa ggcgaaacgg
     9961 tcgctttgcg ccaccgacgc cagagacatc aggttgcccg cataggtgag tttatccacc
    10021 accaccaccg cgtctgccgt ttcatggatg atatgccgca ccaccgcaga tccgataaag
    10081 cctgcgccgc cggtcaccag aatgcgtttc atcagcgcca gacccctttg gtatcaacca
    10141 cataacgttg atgaaccgca tcgccgggaa tcgctttaaa ttcgtcgtga tcgaccagca
    10201 tcaccagcac atcggcggcg gccagcgccg cgtccagttt cgccagcgtg caaagtccgt
    10261 ccaatttttt cggcaactga cggatattcg gttcgacgac cagggtttcg ccgctgtgcc
    10321 agcgggcgat actttgcgcg atccccatcg ccgggctttc gcgcagatcg tcgatattcg
    10381 gcttaaaggc cagcccaaaa caggcgattt tcacttcgct ggcgcgttta tcggtggctg
    10441 ccaggcaatc tgcgaccgcg gcttttacct gatcgaccac ccagtgcggt ttgccgtcat
    10501 tcacttcacg cgcggtgcga atcagtctcg cctgctgcgg attttgcgcc acaataaacc
    10561 acggatcgac cgcaatgcag tgcccgccaa cgcctgggcc cggctgcaaa atattgacgc
    10621 gcggatggcg gttcgccagg cggatcaatt cccagacgtt aatcccctgt tcggcgcaaa
    10681 tcagcgacaa ttcattcgca aaggcgatat tcacatcacg gaagctattt tccgtcagct
    10741 tgcacatctc tgcggtgcgc gagttggtga caacgcattc gccctcaagg aaaattttgt
    10801 acagcgcgct ggcgcgagcc gaacatactg gcgtcatacc gccaatcacg cggtcatttt
    10861 taatgagttc caccatcacc tgacccggca gcacacgctc cggacaatag gcgatattca
    10921 cgtcggcctg ctcgcccgcc tgctggggaa aggtcagatc cgggcgcatc ccggccagcc
    10981 agccagccat ttgctccgtt gcgccgaccg gcgatgttga ttccagaatc accagtgccc
    11041 ctttttttaa taccggcgca atggatttcg ccgcggcttc cacataggcc atgtcagggt
    11101 cgtgatcgcc tttgaatggc gtcggcacgg caatcaggta cgcatcggcc tcgacaggtg
    11161 tcgtcgtcgc acgcagaaag ccgccttcca ccgccatctt caccacattg cccaacgccg
    11221 gctccacgat gtgaatttca ccgcgattta tggtgtctac agcatgttgg ttgatatcca
    11281 cgccgataac ctgcttctgg cgggaagcaa aagcggccgc agtcggtaat ccgatatacc
    11341 ccagcccaat aacagaaatg gtcgtaaaac tcataacgat acccgataac tttttaacgc
    11401 ctgtaaaatg cgcgcgcatg attgcccgtc accataagga ttatgggcgc ggctcatggt
    11461 ttgatattca ttttcgtcgt gcagcagacg cataacttcc gccacaatgc gccgggagtc
    11521 cgtgccgatc agtcttaccg taccagcggt aatggcttcc ggacgctctg tggtttcacg
    11581 catgaccaat accggcttac ctaatgacgg cgcttcttcc tgaataccgc cggaatcggt
    11641 cagaatgagc caggcgtgat tcatcagcca gacaaaaggt aagtagtcct gcggctcaat
    11701 cagtaccacg ttttcaacat ggccgaggat acggttgaca ggttcgctga cgttgggatt
    11761 gagatgcacc ggatagacaa tttgcacatt ctggttcgcg gcggcaattt ccgccagcgc
    11821 ctggcagata tgctcaaagc cctgaccaaa gctttcacgc cgatgaccgg tcaccaaaat
    11881 catcttctta ttcgcgttga ggaaaggata ctgctcggcc agttcagcct gtaatgtatc
    11941 gctcgtcaga acgcgatcgc gtacccagat cagcgcgtca ataacggtat tgccagtgac
    12001 aaaaatgcgc tcatccggaa tgttctcccg caacagattc tgccgcgagt tttccgtcgg
    12061 cgcaaagtgg tacatcgcca gatgtccggt cagcgtgcgg tttgcctctt ccggccaggg
    12121 ggaatagaga tcgccggttc gcaacccggc ttctacgtgc cctaccggaa ttcgttgata
    12181 gaaagccgcc aggctggtag caatcgtagt ggtggtatct ccatgaacca gcaccacatc
    12241 aggtttaaaa tctgccagga tcggctttaa tctctccaga attcggcagg taatttccgt
    12301 caacccctgt cccggctgca taatgttgag atcgtaatca ggcacaatag aaaaaagagt
    12361 taatacctga tcaagcatct cccgatgctg cgcagtaacg catactttgg cctcgaaatg
    12421 aggatctttt tccagcgcat ggaccagagg cgccatctta atggcctccg gtcgtgtacc
    12481 aaatacagtc agtactttca catcgattct cttcgaatag acagtagggg cccagccccc
    12541 tactgcagag gtgttgctaa atcgtgcggc gacgggttaa ggcaacgccc gcaccgatta
    12601 gcgccccaac gataccccac ataatcatca ggaaggctcg gcgtgggcta tcacgtttta
    12661 ccggttcttc cggcgtacgc aaataacgat aggtctgaaa acgagggtcc agggtcggcc
    12721 ccacattaag cgtattcaac attgcccgat tttgaaagta gtccaaatcg aacgcagggc
    12781 caaccgcttg cagattttca agacgcgcct gcaacatagg gcgaccgagt aaaaaaagct
    12841 ctgagtccgg taattcatcc gccgggacat ctgtcgcgct acgagaaata ttatgttgtt
    12901 ccgcaatttt gagcgcctgc tcaatactgt ttacacgacg cgaatagatc gctttcgcaa
    12961 cctcttcctg ccgtttgacc tgggctttca tctgcacggt acgcgcagcc caggcacctt
    13021 ttaattcatc attcagatgg ctcgccgccc gctggctggc gaatgcgaca tactgacgca
    13081 gcagattatt ggcatccggc gcagtttcag caatcagcct cacgttgtcg ttgatggcgc
    13141 gtgtaaaatc gccgggcgta aactgtatgt tattgatcag ttcatcaagc atcaccgcat
    13201 cagctttgct attcccgacc attcgctgct tgtaatagtc cgtctgtaac cagaaatcgc
    13261 gacgcgtatc ccaggaggca agttgcatga tgaactcttt atacgcttca tccatcaccg
    13321 agggcttatc agaagaagca ggatcggtct taatatccag gttgcgcaga aactgctgct
    13381 gggagtaata accgcccaac atatttacgg ttgggcgatc ggtgatcgcc gtcgcactcc
    13441 actcctgacg agcaaaaaag gtataggcta acgcgataag ggcaaatagc aggccaatgc
    13501 cgataatcca gaatttgcca gcccataaag tacgaaacaa cccgcgaata tccagttcat
    13561 tttcagcgct caccgcgcgt gcccccggta atggttgtgt catcgtatcc tcatttactt
    13621 ggttaagttt ggccggttct tacgttgcct gcgcaggcga cgcttcacac gcttaataaa
    13681 tctcgccacc ttccaggccc gcttaatgca gtagccatag aggaagaatg ctagcaaaaa
    13741 gagcaccaac ataacccatt caggaacaaa atgagagtat tctgccgtta cgcctactcc
    13801 cgccagaatc gccgctgcga gcgtaataag aacaaatgcc tggcgggaag taaaccctgc
    13861 tcgcataacc aaatgatgaa tatgttggcg atcaggggaa aaggggctca tccctttacg
    13921 cagacggcga tacataatcg ccaccatatc catcaatgga atagcgataa tccatagcgc
    13981 ggtaaccggg ctgatagagt gagttttccc ctgcgtcgtt tccagtaaga gccagatgac
    14041 ggtaaagcca atcagtgtac taccggcatc acccataaag actttataac gccgccccaa
    14101 aataccgaga ttaagcataa tgtaaggcag aatcgcggcg atcatggcaa agcaccacat
    14161 tgccagacta gtctgaccat caaaccataa aatcagcccc atcgccgcaa atgagacgct
    14221 ggataaccca cccagcagtc cgtcaatacc gtccaccata ttgaaagcgt tgatcgccgc
    14281 ccatacggca aacagagtaa ggaaatagcc aaaggggcca agcactaact cccaaggccc
    14341 aaagatgtaa ccaaggctac ctaagtgaag ttttgcgata accatcatta caaccgcaat
    14401 aacagcctga accacagcac gaatttttac actgatatca aaacggtcat ccatcgcacc
    14461 aacaaaaacc aatacaccag cgcaaataag atatagcgat aagtgcggta tgtagtaatc
    14521 cgagaggcca aacataaagc agattcctgc aaacacagaa atcccgccga ctaatgggat
    14581 aacgccctga tgtcgtttac gaaagtttgg tttatccact aaaccaattt ttatggctac
    14641 ttttcgcgca agaaaaataa aaatggtcgt gaataaaaaa atactgatta gctcagataa
    14701 agcggtgagt aacttcacag tgtatgtgct ctcagcatat atcatttcct taaagtataa
    14761 tgcgttacgc cagctcctag aagagacctg ttagaacatt acacttttta ccgcaaacaa
    14821 tgtgtattgt gcatggtgtt actctgtagc gcatatcccg atgaccagtt tatatgacat
    14881 gacgccagga tgaatcgcaa aacaaaaacg ccacgtaaaa acgtggcgtt ttcaggtaaa
    14941 gaccaggtta tgagcgcttc atcatctcga aaaagtcgtc attagttttg gtcatcgcca
    15001 gtttgttaat gaggaattcc atcgcgtcaa tctcacccat cggatggatg attttacgca
    15061 ggatccacat tttctgcagc tcttcctgag tggtgagcag ctcttcttta cgggtaccgg
    15121 aacggttgta gtcgatagcc gggaagacac gtttttcagc gatcttacgc gagagatgca
    15181 gctccatgtt accggtgcct ttaaactctt cgtagataac ttcgtccatc ttggaaccgg
    15241 tatcgattag cgccgtcgcg atgatagtca ggctaccgcc ctcttccacg ttacgcgccg
    15301 cgccgaagaa gcgcttcgga cgatgcaggg cgttagcatc cacaccaccg gtcagtactt
    15361 taccggaagc cggcaccacg gtgttgtagg cacgcgccag acgggtgatg gagtcgagca
    15421 ggatgatgac gtctttcttg tgttcaacca gacgtttcgc cttctcgata accatttcgg
    15481 caacctgaac gtggcgggat gccggttcgt caaaggtaga ggcaaccact tcgcctttca
    15541 ccagacgctg catctcggtt acttcttccg gacgttcgtc aatcagcagc accatcagca
    15601 cgcagtctgg gtggttatac gcgatgctct gcgcgatgtt ctgcagcagc atggttttac
    15661 ccgccttcgg cggcgcgaca atcagaccgc gctggccgcg accgatcggc gaagccagat
    15721 ccagaacgcg cgccgttaag tcttcggtag aaccgttacc acgctccata cgcagacgag
    15781 agtttgcgtg cagcggggtt aagttctcaa agaggatttt gttacgggcg ttttccggtt
    15841 tgtcgtagtt aacttcgtta actttcaaca gcgcaaaata gcgttcacct tctttcggcg
    15901 ggcgaatctt accagaaatg gtatcaccag tgcggaggtt gaaacggcgg atttggctgg
    15961 gggaaacgta gatatcatca ggaccggcga ggtaggagct gtctgcagaa cggaggaaac
    16021 caaatccatc ctgcaatatc tccagcacac cgtcgccaaa gatatcttcg ccactctttg
    16081 cgtgctgctt caggatggca aaaataatgt cctgcttgcg catacgggcc aggttttcca
    16141 gccccatact ttcgccgaga gtgatcagct cagaaaccgg cgtattcttt aattcggtaa
    16201 gattcataat ggtgtgagtt cttaaacttg gggtaaatct cgaacttaat gttgtgaatg
    16261 gtatggcagg gtcatccatg cctgtttacg gctatcaact catgtctgtt cgctgtctgg
    16321 tcacaggaaa gtacgcagaa ctgaaacgac aagacggaat gagcgaagag ccaggaatct
    16381 ttccacttct cgtgcgagaa aaaacgggaa gtgacggata aaaccagatt caaacttaat
    16441 aaggtatgtt taattcgaag tcaatactaa cttagcacga ctcagaccgg gcgtccagag
    16501 atcctgacaa tttaagaata acgtaaggac aacagacgcc acgaaactgc ctgatacctt
    16561 aatcattcgt cgaatgacag acgcctgacc atacagcgcc tttgtcattc gacgtataaa
    16621 aggtattacg ccagattggc gtcgagaaac tctttcaact gacctttaga caatgcgcct
    16681 actttggttg ccgccacttc gccgttttta aacagcagca gagtcggaat accgcggatg
    16741 ccatatttag gcgcagtacc tgggttctgg tcaatgttca gtttggcaac ggtcaatttg
    16801 ccctgatatt cgtcagcgat ttcatccaga atcggagcga tcattttaca cggcccgcac
    16861 cactctgccc agaaatcaac gaggatagcc ccgtccgctt tgagtacatc cgtgtcaaaa
    16921 ctgtcgtcag tcaggtgaat aattttatcg ctcatatata actccacagg aataagcctg
    16981 gcgtgttggt gtagcattaa ccaacgaggt gctgatgtta acttcgccaa caaaggttga
    17041 ctttatttca ccggatacgc tttcgtaaag caatagtaag ctgatattct accacactat
    17101 gagcaaaaca catttaacag aacagaagtt ttccgacttc gccctgcacc cacaggtggt
    17161 tgaagccctt gaaaaaaaag ggttttataa ttgtacgccc attcaggcac tggcccttcc
    17221 gctaacgctg gcgggtcgtg acgttgcagg gcaggcgcaa accggtaccg ggaaaacgat
    17281 ggcgtttctg acgtcaacgt ttcattattt actttctcat cccgcgatcg acgatcgcaa
    17341 ggtgaaccag ccgcgcgcgc tgatcatggc gccgacgcgt gaattagccg tacaaattca
    17401 cgcagacgcg gagccgctgg cgcaagcgac aggcttaaaa ttaggcctgg cttacggcgg
    17461 cgatggttac gacaagcagc ttaaagtgct ggaaagcggc gttgatattc ttattggtac
    17521 gacgggccga ttgatcgact acgccaaaca aaaccacatt aacctcggcg ccattcaggt
    17581 cgtcgtactc gatgaagccg atcgcatgta cgatttgggc tttattaaag atatccgctg
    17641 gctgttccgt cgtatgccgc cggctgcgca gcgtctgaac atgttgttct ccgccaccct
    17701 gtcttatcgg gttcgcgagc tggcgtttga acagatgaac aacgccgaat atgttgaagt
    17761 ggaaccggag caaaagaccg gccaccgcat taaagaagag cttttctacc cctctaatga
    17821 agagaaaatg cgtttactgc aaacgctgat cgaagaagag tggccggatc gcgccattat
    17881 tttcgccaac accaagcatc gttgcgaaga tatctgggga catctggcgg cagatggcca
    17941 tcgtgttggt ctgctgaccg gcgacgtcgc gcagaaaaag cgcctgcgga ttctggatga
    18001 gttcacccgc ggcgatctgg atattcttgt ggcgaccgat gtcgcggcgc gcgggttgca
    18061 tatccccgcc gtaacgcacg tctttaacta cgatctgcca gacgattgtg aagactatgt
    18121 tcaccgtatc ggtcgtaccg gtcgcgctgg cgccagcgga cattccatca gcctggcttg
    18181 tgaagagtat gcgctgaatc tgcccgctat tgagagctat atcggccact cgattccggt
    18241 cagcaaatac aatccggaag cgctcatgaa cgatctgccc aagccgttgc gtctgacgcg
    18301 ttcgcgtcct ggcaatggtc cgcgccgcgc tggcgctccg cgtaatcgtc gtcgttcagg
    18361 ttaagaaaag ttatgccata cacaaaatca tttagcctgt atcaaggcgg caagaaaaca
    18421 aatcccgatg agcttaggaa gagtacgcag ccaacacgga tacaggttga aggatgaagt
    18481 gtatgaattc cacctcgttg tatgccgcca ttgatctcgg ttccaatagt tttcatatgc
    18541 tggtcgtgcg cgaggcggcg ggaagcatcc agacgctgac ccgaataaaa cgcaaggtgc
    18601 gtctggccgc gggtctgaac aacgacaacc acctttcagc cgaagcgatg gaacgcggct
    18661 ggcaatgcct gcgtctgttt gctgaacgtt tgcaggatat cccgcagcca caaatccgcg
    18721 tggttgccac cgcaacattg cgtctcgccg tcaatgcagg tgaatttatc gcgaaagcgc
    18781 agactatcct tggttgtccg gtgcaggtta tcagcggcga agaagaggcg cggctaattt
    18841 atcagggggt cgctcatacc accggcggcg cagatcagcg actggtggtg gatatcggcg
    18901 gcgccagcac tgaactggtt accggcactg gcgcgcaaac cacgtcgctg tttagcctgt
    18961 cgatgggctg cgtaacgtgg cttgaacgct attttagcga tcgtaatctg gcgcaagaaa
    19021 actttgatga tgcggagaaa gccgcgcgcg atgtactgcg tccggtcgcc gatgaactgc
    19081 gttttcatgg ctggaaggtc tgcgtgggtg cctccggcac cgtacaggca ttgcaggaaa
    19141 tcatgatggc gcaggggatg gacgagcgca ttacgctcgc caaactgcag cagctaaaac
    19201 aacgcgcgat acagtgcggg cgtctggaag agctggaaat cgaaggcctg acgctggagc
    19261 gcgcgctggt tttcccaagc gggctggcta ttctaatcgc gatatttacc gagctgaaca
    19321 tccagagcat gacgctggca ggcggcgcgt tacgcgaagg gctggtgtat gggatgttgc
    19381 atctggcggt agatcaggat atccgcagcc gcacgctgcg aaacattcag cgtcggttta
    19441 tcgtcgatac cgatcaggca aatcgtgtgg cgaagctggc agataacttc ctcaaacagg
    19501 tagaaaatgc ctggcatatt gaacctatca gtcgtgaact gttgcttagc gcttgccagt
    19561 tgcatgagat cggtctgagc gttgatttta aacaggcgcc ctatcatgcc gcctatttag
    19621 tacgccattt ggatctgcct ggctatacgc ccgcgcagaa aaagttgctc gccaccctct
    19681 tactgaatca gaccaatccg gtcgatctct cttcgcttca tcagcaaaac gcggtaccgc
    19741 cccgtgttgc ggaacagcta tgccgtttgc tgcgactggc gattcttttt gccggtcgcc
    19801 gtcgtgacga tctggtacca gaaattacgc tacaggcgct aaatgaaaat ctgacgttaa
    19861 ccttgcctgg cgactggctg gcgcatcacc cgctgggtaa agagttgatt gatcaggaaa
    19921 gccagtggca aagctatgta cactggccgc tggacgttcg ctaaccgtag tctgattgcc
    19981 ggatgacgct tcgcttatcc ggcctacgat ttcgctcgct ttgccgccat catggctttc
    20041 agattagcca ggtgactttg ccctttttgc attcgctcct cagcgcttac cactttgcgc
    20101 tcctgctccc agattaaatc atcctgcggc agttctaaca ggaagcgact gggttccggg
    20161 cgcaccagtt ccccatactg acggcgctct ttacataatg taaaggtgag ctctttctgc
    20221 gcacgagtga tcccgacata ggccagccga cgctcttcct caatattgtc ttcgtcaatg
    20281 ctgctttgat gcggcaaaaa tccttcttcc attcccacca tatagacata caggaattcc
    20341 agtcctttcg acgcatgaag cgtcatcaac tgtacctgat ccagctcttc ttcgctctcg
    20401 ccgcgctcca tcatatcgcg cagcgtaaag cgtgtaacca cctgggtgag cgtcatcggc
    20461 tcatcgagtt cgttgccttc cagcatctca gtcatccagc taaagagctg gttaacgttt
    20521 ttcatacgca tttccgccgc tttggggctc ggcgaggttt cgtacaacca ggattcatag
    20581 tcaataccgt ggatgagatc gcgcacggcg gcgacaggct cacgttcggc cagacgctgg
    20641 atttccccca gccagtgggt aaaacgcgtc aatgaatcgt aaccacgtcc ggtcagcttc
    20701 tggctaagcc ccatatcaaa gctggcggta aacaggcttt tattacgcgt cattgcccat
    20761 tcacccagct tttgcagagt ggccggaccg atttcgcgtt ttggcgtatt cacgatgcgc
    20821 aggaaagcgc tgtcatcatc cgggttggtc aacacccgca gataggccag caagtcttta
    20881 atctccggac gggagaaaaa tgaggtgccg ccggaaattt tgtacggaat gcggttctgc
    20941 atgaggaatt tttcaaatac ccgcgactga tgattcccgc gatacagaat ggcgtaatcc
    21001 ttgtactggg tcttgttcac aaagtgatgg gcaatcagtt cgccggtaac gcgctcagct
    21061 tcatgctctt cattgtttgc gcttaacact ttgagttccg cgccgtaacc gagttcggaa
    21121 aagaggcgct tttcaaagac gtgcggattg ttggcgatga gaatatttgc cgctttcagg
    21181 atgcggcccg aagaacgata gttttgctcc agcttaatca cctgcagcgc cggaaaatcc
    21241 tggctcagta acaccaggtt ttgcggacgc gccccgcgcc aggagtagat agactgatcg
    21301 tcatcgccta cgaccgtaaa gcgcgcgcgt tgcccaacca gcagcttaac caactcatac
    21361 tggctggtgt tagtatcctg atattcatcc accagcagat aacgaatttt attctgccag
    21421 cgctcgcgca cctcgtcatt gcgttgcagc agcagcgtcg gcagcaaaat caaatcatca
    21481 aaatcgagaa cgttacatgc cttcatatgg gcgtcgtaaa gcccgtagca gtgggcaaaa
    21541 atacgatcgc gttcaccttt cgcccccgcc gctgcctgtg caggcgtttt gagatcgttt
    21601 ttccagttgg agatcgtgga gatcagctgt tgcaacagaa ccttgtcgtc ttcgatcagg
    21661 ccttcggtca gctctttgag caaggcgacc tggtcggtat cgtcaaacaa tgaaaagttc
    21721 gatttcatcc ccagcgcagc gtactcgcgc ttaataatat ccagccctag cgtatgaaag
    21781 gtggagatca tcaaaccgcg cgcttcctta cggccgagcg tctgcccgac acgttctttc
    21841 atctcacgcg ctgccttgtt ggtaaacgtc accgccgcaa tatgccgggc ctgatagccg
    21901 catccgcgga tcaggtgggc gattttattg gtaattacgc gagttttacc agaacccgct
    21961 cctgccagca ccaggcaggg tccggtgacg aattcgacag cgtgttgttg gccaggattt
    22021 aaacgcatgg gaatagtgct caatcttcga acgggggagg gattgtagca gaaagcgagg
    22081 cccagagaag accaggctgc tttttcaggc agcctggaaa aggtcaatca gcaggctctg
    22141 gcggcaagcg acgtatagcc attacgctgt gcgctcttga tccaactgta agaacccatt
    22201 agcgcgatca ccgtcagcag aacatactca agcgacatcg cataaacgcc ctgtactgca
    22261 tagatcacga cgctaattac atcaataatc acccacagca gccagttttc cacgtacttg
    22321 cgggtcatca gcaccatcgc cgcaatcgac aacaccagca tggtggaatc ccagaacggg
    22381 aacgcgtccg gctggagttc aggcatcgcc acctgcatac ctaccgtttg cagcagagcg
    22441 agcataacgc gggtcaacat agcgaagacc ggatcgataa accacgtcat cagcagaatg
    22501 ctaataatac atatgccccc caacctccat gtttgttgac aagaaagcca gcgtactttc
    22561 agagcggctt cccgggcgtc attctgccgg ctccatgcgt accagccgta aatattcgcc
    22621 gcaaagaaaa acacctgaag tagcaagctg gcatacagtt gaatctgaaa aaagatggcg
    22681 gcaaacagag tgacgttaat caagccaaac aggtaattaa tgattttttc ccggctggcg
    22741 caccagatgc acaataagcc aaagacggta ccgatagcct caatccacga tagcgcatac
    22801 ccaccctcgc cgagaggaat gttgaccatt acattgttaa tgctgaaaaa gtccatcatt
    22861 gctctccttg caaactatcg aaataaatgg cctgaagcgc cagagaaatc tggcgctctt
    22921 caccttgctg gcacaaggtt tcctgctgaa cataatggtt aatgctgctc tccagacagc
    22981 cactatgcgc gacgaccacg tttagcaacg acgcggtacg cagcccacgt aacgctccca
    23041 ccaccatcag cgcggcggtt tccatatccg cgccgagaac tcccctggcc gaccattcgg
    23101 catccagttc agcttcgcga tcggtataaa aactgtcatg gctgcgcacc agcccgcaaa
    23161 cggcagagat gttcatctgt ttcgcctgct gtatcagcgt ggcggtaaga taagggtccg
    23221 cacaggccgg ataactggcg ggcgcatagg ttttgctggc gccgtcgtca gccaccgcgc
    23281 cgtgggcgat gatcacatcg cccaacgcca gcgagtcctg caacgcgccg caactaccga
    23341 tacggattag cgtgttgacg ccaacctggc gtaactcctc aatggcgata gcggttgacg
    23401 gtccgccgat tcccgtggag agcacgacta tttcaacccc ctggtaccag ccgcgcgccg
    23461 cgcgaaactc ccggttttgc cccagaatct cagccttatc aagaaaacgg gcgattctat
    23521 ccacccgccc gggatcgccg ggcaaaagcg catatttcgc gcgggtcatg cttgtgttaa
    23581 gccgaatatg gggttgcatc tccctctcct tattgttctg agaggttcag atttccgcct
    23641 cctgtttgag tttttcagga gccagtaaaa tgatccgctc accgtcggta tcgataatgt
    23701 tcagcgattt cagatcgtgc agtatccggt tgatactgcg cgtcgtcgcc gcaaattcct
    23761 gaccaagatt ctgcttatca agcaaaatag tggttgattc atattgttga taacgcagcc
    23821 ataatgcctg gcatacgcgc tgatgcagcg agtacaaatt gtcgctactg gcctttttcg
    23881 acaactggta atactgttgg ctgaaaaacc gcagcattcg ctggttaaag tggttatcca
    23941 gcgtcagcca gcggcaaaaa tgtgcttgcg gcaggctaag tagctgtaca ttgccgacgg
    24001 ctacgacaga acagatgtaa tgccgcgact caaatatctc tagctcgccc agcatgtctc
    24061 ctttgccata acgcgcctgc cggtaacggc gtccatcttc agcttcgtaa aaaacatcca
    24121 cttcgccggc cacgatgagc gaaaattgct agcatgtttc cccctggcgg cagataagcg
    24181 cgccgcggga aatgtcgtca aatcgccagc actgcatgat ttccaacggg cagtatttga
    24241 gtaattcata gagcactggg tcgcgtacga cctggcgtag ccctaaaagc cagtcgtctg
    24301 gaaattctgc gtttttcatt atgttcatgg tatctcgccc cttgtcagaa aggacaggac
    24361 cgtcgtcccg cccatccgaa atacgcccgc taaaaatgcc gcttatctcc cggttcatta
    24421 aatcaggcgg gacatctgtc ctgtaatggc gaagagtata tgtctgacgg cctaaggagt
    24481 gataaagtga cggccaatct ttgcgacgtg agaacacaat aatggcaaaa atggcagcag
    24541 cactgcatat tcttgtaaaa gaagagaaac tggctttaga tcttctggag caaattaaaa
    24601 acggcggcga ttttgagaag ctggcgaaga agcattctat ctgcccatcc ggtaaaaaag
    24661 gcggtcattt aggcgaattt cgtcagggcc agatggttcc ggcattcgat aaagtagtct
    24721 tttcctgccc ggtactggag ccaaccggcc cactgcatac ccagttcggt taccacatca
    24781 ttaaggtatt gtatcgtaaa taaaaagccg ggtggcggct acgccttacc cgacctacat
    24841 cgtctgcttg attttgtcgg tcgggtaagc gctagcgcca cccgacaagg tatatcaacc
    24901 cgctaccgca atacgcttca tatccgtcat atagccgcgc agtttcttac ctacctgctc
    24961 aatcgcatga ctacgaatcg cgtcgttcac gtcgcgaagc tgtgcgttgt ctaccgcgcc
    25021 ttccgggata gcactaccca gatcgcccgg ttgcaattcc gccataaacg gtttcagtag
    25081 cggtacgcaa gcgtaagaga acaggtagtt accgtattct gcggtatcgg agataaccac
    25141 gttcatttcg tacaggcgct tacgggcgat ggtgttggca atcagcggca actcgtgcag
    25201 tgattcgtag taagcggatt cttcgatgat gccggaatcg accatggttt cgaacgctag
    25261 ctcaacgccc gctttcacca tcgcgatcat cagaacgcct ttatcgaagt actcctgctc
    25321 gccgatttta ccttcaaact gcggcgcggt ttcgaacgcg gttttaccgg tctcttcacg
    25381 ccaggtcagc agtttcttat cgtcgttcgc ccagtcagcc atcatgccgg aagagaattc
    25441 gccggagatg atgtcatcca tgtgtttctg gaacagcggc gccataatct ctttcagctg
    25501 ttcggacagc gcgtaagcac gcagtttcgc cgggttagac agacggtcca tcatcagggt
    25561 gatgccgccc tgcttcagcg cttcggtgat ggtttcccag ccgaactgaa tcagtttttc
    25621 ggcgtatgcc gggtcggtgc cttctgccac cagcttgtcg aagcacagca gagaaccggc
    25681 ctgcagcata ccgcacagaa tggtctgctc gcccatcagg tcagatttca cttccgccac
    25741 gaaagaagat tccagtacgc ccgcacggtg accgccggtg gccgcagccc aggctttagc
    25801 aatcgccata ccttcgcctt tcggatcgtt ttccgggtga acggcgatca gcgttggcac
    25861 accgaagcca cgcttgtatt cttcacgtac ttcggtgccc ggacacttcg gtgccaccat
    25921 caccacggtg atgtctttac ggatctgctc gcccacttcg acgatgttga agccgtggga
    25981 gtaacccagc gctgcgccgt ctttcatcag cggctgtaca gaacgtacaa cgtcggagtg
    26041 ctgtttgtcc ggcgtaaggt taaccaccag gtcagcctgc gggatcagct cttcgtaggt
    26101 gcctactttg aagccgtttt cggtcgcttt acgccaggag gcgcgcttct cagcaatagc
    26161 ttctttacgc agggcgtagg aaatatccag accggagtca cgcatgttca ggccctggtt
    26221 cagaccctga gcgccacagc cgacgatgac cactttttta ccctgcaggt agctcgcgcc
    26281 gtcggcgaat tcgtcgcggc ccataaagcg acatttaccc agctgcgcca gctgctggcg
    26341 cagattcagt gtattaaagt agttagccat gatggtgtac tccgtgatgt tgtgttgtcg
    26401 cgcttattgt tcggtttaca gattgctatc tgtgcgaatg aacccacatt acaacaggaa
    26461 atttattgcg gaaattgata tattcacaac gttatgttgc ggtttatgca acgtcaaaaa
    26521 ccggaggtct gtctgtggat ttacgcgatc taaaaacctt cctgcatctg gcggaaagcc
    26581 gccattttgg ccgcagcgcg cgggcgatgc atgtcagtcc ttccaccctt tcccgacaga
    26641 ttcagcggct ggaagaagac ctcggccagc cgctgtttgt gcgcgataac cgtacggtca
    26701 cgctgaccga agcgggtgaa gagctgcgag tgtttgccca acagacgctt ttgcaatatc
    26761 agcagttgcg ccataccctc gatcagcagg ggccgtccct ttccggcgaa ctccatatct
    26821 tctgttcagt gactgcggcg tacagccacc tgccgccgat tctcgaccgt tttcgcgccg
    26881 aacacccttc tgttgaaatc aaattgacga ccggagacgc cgccgatgcg atggaaaagg
    26941 tggtaacggg agaagcggac ctggcaatcg ccggcaaacc agaaacgctg cccggcgcgg
    27001 tggcgttttc gatgctggaa aatctggcgg tggtgctgat cgccccggcg ctgccctgcc
    27061 cggtgcgtaa tcaggtgtcg gttgataagc ccgactggtc aacggtgccg tttatcatgg
    27121 ccgatcaggg accggtacgc cgccgcattg agctgtggtt tcgccgccat aaaatcagca
    27181 atccgcagat ttacgccacc gtcggcggtc acgaagcgat ggtctcaatg gtggcgctgg
    27241 gctgcggcgt ggcgctgctg ccggaagtgg tgctggaaaa cagtccggag ccggtgcgca
    27301 accgggtgat gattttagaa cgcagtgatg aaaaaacgcc gtttgagctt ggcgtctgcg
    27361 cgcaaaaaaa gcggctgcat gagccgctaa ttgatgcgtt ctggaagatt ttaccgaatt
    27421 agttttacgg ccctaccatt acccgaacag gcttcccaat acggctaagc atattcacca
    27481 gagcatcaat ggtgaatttg ctgcatttct tgttgacgac atccgaaacg cgcggtcggg
    27541 atatatgcaa aactgtagca acctcggctt gcttcatctg gttttgcgta atccagaggg
    27601 taatttcttc cattagctgt tgtttaatgg ctaacgtgtt ttcgatttca ttcagggaat
    27661 cagcgtaaaa cttttctgcg tcctgcttat gaaaccccaa atcagcaaaa acattaccgc
    27721 cagatggcgt cacatggcga aaatcactat cagttttggc aatcacaagc tgtttctccg
    27781 ttgttgcacc acccggttat aacgcgttct ggcgatgttt ttatcatgct gactggtttg
    27841 ttgcgtctgt ttttggaaac tatgcaaaac gtagagtgct tctgcaaaat tagcgacata
    27901 cataacgcga tagataccat tgttgttacg aatacgaatt tcatttaccc cagccccaat
    27961 ttctgaaaac ggtttccagt catcgggttc aattccatac tgaattttgt gaagctgata
    28021 accgactgct ttacgtaccg ttatgggaaa agccaggaga tcctcc
//
LOCUS       DAJVSD010000029        27839 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.029, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000029 DAJVSD010000000
VERSION     DAJVSD010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 27839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27839
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.029"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..1684
                     /locus_tag="OQP62_001074"
     CDS             <1..1684
                     /locus_tag="OQP62_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016159766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
                     /protein_id="HCS1720681.1"
                     /translation="LGAVVVDPYGNAPLTALVELDSHIISDVKVTVHGKGEKGVPVTY
                     TVGKESLETYDGIPIFGLYQKFANNVTVEYKENGKAMKDDYVVQTSAIVNHYMDNRSI
                     SDLQQTKVIKVAPGFEDRLYLVNTHTFTPQGAEFHWHGEKDKNAGILDAGPAGGALPF
                     DIAPYTFVVDTQGEYRWWLDQDTFYNGHDMNINKRGYLMGIRETPRGTFTAVQGQHWY
                     EFDMMGQILADHKLPRGFLDASHESIETVNGTVLLRVGKRDYRKEDGIHVHTIRDQII
                     EVDKSGRVVDVWDLTKILDPMRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPYGDA
                     LGVGAGRNWAHVNSIAYDAKDDSIILSSRHQGIVKIGRDKQVKWILAPSKGWNKQLAS
                     KLLKPVDDHGKPLTCDENGKCKDTDFDFTYTQHTAWLSSKGTLTVFDNGDGRGLEQPA
                     LPTMKYSRFVEYKIDEKKGTVQQVWEYGKERGYDFYSPITSVVEYQKDRDTMFGFGGS
                     INLFDVGKPTVGKLNEIDYKTKEVKVEIDVLSDKPNQTHYRALLVHPTQMFK"
     gene            1704..2375
                     /locus_tag="OQP62_001075"
     CDS             1704..2375
                     /locus_tag="OQP62_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HCS1720682.1"
                     /translation="MSSKWITSLFKSVVLTAALVTPFAASAFTEGTDYMVLEKPIPNA
                     DKTLIKVFSYACPFCYKYDKAVTGPVSDKVADLVTFTPFHLETKGEYGKQASEVFAVL
                     IAKDKAAGISLFDAKSQFKKAKFAWYTAYHDKKERWSDGKDPAAFIKTGLDAAGMSQA
                     DFEAALKDPAVQETLEKWKAAYDVAKIQGVPAYVVNGKYLIYTKNIKSIDSMAELVRE
                     LATKK"
     gene            2390..3067
                     /gene="dsbI"
                     /locus_tag="OQP62_001076"
     CDS             2390..3067
                     /gene="dsbI"
                     /locus_tag="OQP62_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HCS1720683.1"
                     /translation="MDFIKGLWRDLRARPVDTLVRWQEQRFLWLLMAIAMGGLIILAH
                     SFFQIYLYMAPCEQCVYIRYAMFVMVIGGVIAAINPKNIVLKLIGCIAAFYGSIMGIK
                     FSIKLNGIHHAVHNADPDSLFGVQGCSTDPTFPFNLPLAEWAPEWFKPTGDCGYDAPI
                     VPDGVTLSSVQQWFVDLYQQSEGWYLLPPWHFMNMAQACMLAFGLCLILLLVMSGAWA
                     LKLARGK"
     gene            complement(3238..3891)
                     /gene="ribB"
                     /locus_tag="OQP62_001077"
     CDS             complement(3238..3891)
                     /gene="ribB"
                     /locus_tag="OQP62_001077"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HCS1720684.1"
                     /translation="MNQTLLSSFGTPFERVELALDALREGRGVMVLDDEDRENEGDMI
                     FPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAA
                     EGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDL
                     MTLAGFKPAGVLCELTNDDGTMARAPECIAFAGQHNMAVVTIEDLVAYRQAHERKAS"
     regulatory      complement(3997..4195)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            4328..4624
                     /gene="ubiK"
                     /locus_tag="OQP62_001078"
     CDS             4328..4624
                     /gene="ubiK"
                     /locus_tag="OQP62_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000566826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis accessory factor UbiK"
                     /protein_id="HCS1720685.1"
                     /translation="MIDPKKIEQIARQVHESMPKGIREFGEDIEKKIRQTLQSQLTRL
                     DLVSREEFDVQTQVLLRTREKLALLEQRLSELEARDKPEEVKPAPAIPPVDPQE"
     gene            complement(4699..4908)
                     /gene="glgS"
                     /locus_tag="OQP62_001079"
     CDS             complement(4699..4908)
                     /gene="glgS"
                     /locus_tag="OQP62_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface composition regulator GlgS"
                     /protein_id="HCS1720686.1"
                     /translation="MLMNNNNVYSLNNFDFLARSFARMQAEGRPVDIQAVTGNMDEEH
                     RDWFCKRYALYCQQATQAKKLELEH"
     gene            5166..5786
                     /locus_tag="OQP62_001080"
     CDS             5166..5786
                     /locus_tag="OQP62_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1449 family protein"
                     /protein_id="HCS1720687.1"
                     /translation="MTLFAEYNSPYLFAIAFVFFIGVLEMISLIFGHFLSGALDAHLD
                     HYDALSSGPAGQALHYLNIGRVPALVVLCLLAGYFGLFGILIQHGGIMLWQAPLSNLL
                     LVPLSIVLSVFAVHYSEKILAPWLPRDESSALREEEFIGGMAIITGHAAVAGTPCEGK
                     FTDKFGQIHYLLLEPEKGKEFKKGDKVLIVCRLSATRYLAERTFYV"
     gene            5805..7484
                     /locus_tag="OQP62_001081"
     CDS             5805..7484
                     /locus_tag="OQP62_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flotillin family protein"
                     /protein_id="HCS1720688.1"
                     /translation="MDDVFGILPSWMFTAIVAVIVLLIIGIIFARLYRRASAEQAFVR
                     TGLGGQKVVMSGGAIVMPIFHEIIPINMNTLKLEVSRATVDSLITKDRMRVDVVVAFF
                     VRVKPSVEGIATSAQTLGQRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENF
                     VQGVQNTVAEDLSKNGLELESVSLTNFNQTSKEHFNPNNAFDAEGLTKLTQETERRRR
                     ERNEVEQDVEVAVREKNRDALERKLEIEQQEAFMTLEQEQQVKTRTAEQNAKIAAFEA
                     ERHREAEQTRILAERQIQETEIEREQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKS
                     IAIAAKSEQQSQAEARANDALADAVRAQQNVETTRQTAEADRAKQVALIAAAQDAETK
                     AVELTVRAKAEKEAAELQAAAIIELAEAARKKGLAEAEAQRALNDAINVLSDEQTSLK
                     FKLALLQSLPAVIEKSVEPMKSIDGIKIIQVDGLNRGATAGDVAAGGANGGNLAEQAL
                     SAALTYRTQAPLIDSLLNEIGIAGGSLKALTTPLVSSATDEINREATIKEQ"
     gene            7725..7784
                     /locus_tag="OQP62_001082"
     CDS             7725..7784
                     /locus_tag="OQP62_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS1720689.1"
                     /translation="MMHQVIILIVLLLISFPAY"
     gene            complement(7944..9377)
                     /gene="hldE"
                     /locus_tag="OQP62_001083"
     CDS             complement(7944..9377)
                     /gene="hldE"
                     /locus_tag="OQP62_001083"
                     /EC_number="2.7.1.167"
                     /EC_number="2.7.7.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase/D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase HldE"
                     /protein_id="HCS1720690.1"
                     /translation="MKVNLPAFERAGVMVVGDVMLDRYWYGPTCRISPEAPVPVVKVN
                     TVEERPGGAANVAMNIASLGANARLVGLTGIDDAARALSKTLAEVNVKCDFVSVPTHP
                     TITKLRVLSRNQQLIRLDFEEGFEGVDPQPLHERINQALGSIGALVLSDYAKGALTSV
                     QTMISLARQAGVPVLIDPKGTDFERYRGATLLTPNLSEFEAVAGKCKSEDELVERGMK
                     LIADYDLSALLVTRSEQGMTLLQPNKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAA
                     GNTLEEACYFANAAAGVVVGKLGTSTVSPIELENAVRGRADTGFGVMTEEELRQAVAS
                     ARKRGEKVVMTNGVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGESRPVNP
                     LEQRMIVLGALESVDWVVSFEEDTPQRLIAGILPDLLVKGGDYKPEEIAGSEEVWANG
                     GEVMVLNFEDGCSTTNIIKKIQTESEK"
     gene            complement(9425..12268)
                     /gene="glnE"
                     /locus_tag="OQP62_001084"
     CDS             complement(9425..12268)
                     /gene="glnE"
                     /locus_tag="OQP62_001084"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HCS1720691.1"
                     /translation="MTPLSSPLSQYWQTVVERLPEGFTETSLSAQAKSVLTFSDFALD
                     SVIAHPEWLAELESASPQADEWRHYAGWLQEALAGVCDDASLMRELRLFRRRIMVRIA
                     WAQTLSLVDDETILQQLSHLAETLIVGARDWLYAACCREWGTPCNPQGVPQPLLILGM
                     GKLGGGELNFSSDIDLIFAWPEHGETRGGRRELDNAQFFTRLGQRLIKALDQPTMDGF
                     VYRVDMRLRPFGDSGPLVLSFAALEDYYQEQGRDWERYAMVKARLMGDNDDAWSRELR
                     AMLRPFVFRRYIDFSVIQSLRNMKGMIAREVRRRGLKDNIKLGAGGIREIEFIVQVFQ
                     LIRGGREPSLQSRSLLPTLDAIAALHLLPENDVAQLRVAYLFLRRLENLLQSINDEQT
                     QTLPADDLNRARLAWGMKAENWPQLVGELTDHMANVRRVFNELIGDDEADTPQEEERS
                     EPWREVWQDALQEDDSTPVLAHLADEDRRQVLTLIADFRKELDKRPIGPRGRQVLDQL
                     MPHLLADVCSREDAAVTLSRITPLLAGIVTRTTYLELLSEFPGALKHLIMLCAASPMI
                     ASQLARYPLLLDELLDPGTLYQPTATDAYRDELRQYLLRVPEEDEEQQLEALRQFKQA
                     QLLRIAAADIAGTLPVMKVSDHLTWLAEAMIDAVVQQAWTQMVARYGQPAHLDERQGR
                     GFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDVMTNGEREIDGRQFYLRLAQRIMHLF
                     STRTSSGILYEVDARLRPSGAAGMLVTSADAFADYQQHEAWTWEHQALVRARVVYGDP
                     QLTSQFDAVRRTIMTTARDGKTLQTEVREMREKMRAHLGNKHRDRFDIKADEGGITDI
                     EFIAQYLVLRYAHEKPKLTRWSDNVRILELLAQNGIMDEHEAQALTVAYTTLRDELHH
                     LALQELPGHVAQTCFSKERALVQASWRKWLVAV"
     gene            complement(12386..13687)
                     /locus_tag="OQP62_001085"
     CDS             complement(12386..13687)
                     /locus_tag="OQP62_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic triphosphatase"
                     /protein_id="HCS1720692.1"
                     /translation="MAQEIELKFIVNHDAVDALRNHLHTLGGEHHAPSQLLNIYFETP
                     DNWLRRHDMGLRIRGENGRYEMTMKIAGRVTGGLHQRPEYNVALSEPVLDLTQLPAEV
                     WPDGNLPDGLASSVQPLFSTDFYREKWCLDVDGSRIEIALDLGDVKAGEFAEPICELE
                     LELLRGDTRAVLKLAKQLLSQTGLRQGSLSKAARGYHLAQGNAPRENTPTAILRTAAK
                     ATVEQGLEASLDLALSQWQYHEELWLRGDESAKEHVLDAMGLVRHALMLFGGIVPRKA
                     SAHLRDLLTQAEATMTSAVSAVTAVYSTQTAMAKLALTEWLVTKAWQPFLDAKAQAKM
                     ADSFKRFADIHLSRHAAELKKVFGQPLGDKYRDQLPRLTRDIDSVLLLAGYYDAMVAQ
                     AWLENWQGLRHAIITGQRIEIEHFRNEAINQQPFWLHSGKR"
     gene            13929..14543
                     /locus_tag="OQP62_001086"
     CDS             13929..14543
                     /locus_tag="OQP62_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HCS1720693.1"
                     /translation="MPKLRLIGLTLLALSATAVSHAEETRYVSDELNTWVRSGPGDNY
                     RLVGTVNAGEEVTLLQSDANYGQIKDSSGRTAWIPLKELNTTPSLRTRVPDLENQVKT
                     LTDKLNNIDTTWNQRTADMQQKVAQSDSVINGLKEENQKLKNELIVAQKKVSAANLQL
                     DDKQRTIIMQWFMYGGGVLGIGLLLGLVLPHMIPSRKRKDRWMN"
     gene            14606..15847
                     /locus_tag="OQP62_001087"
     CDS             14606..15847
                     /locus_tag="OQP62_001087"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HCS1720694.1"
                     /translation="MKIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGR
                     DFPVFLHPQTHEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDD
                     DGQIIDPYHGRRDLEARLLRHVSPAFGEDPLRVLRVARFAARYAHLSFRIADETLTLM
                     REMTAAGELEHLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPA
                     PAKWHPEIDTGVHTLMTLSMAAMLSPQLDVRFATLCHDVGKGLTPKNLWPRHHGHGPV
                     GVKLVEQLCQRLRVPNDLRDLAKLVAAYHDLIHTFPILQPKTIVKLFDAIDAWRKPQR
                     VEQIALTSEADVRGRTGFEASDYPQGRWLREAWQVAQAVPTKEVVEAGFKGIEIREEL
                     TKRRIAAVANWKEKRCPNPAS"
     gene            complement(15952..16773)
                     /gene="bacA"
                     /locus_tag="OQP62_001088"
     CDS             complement(15952..16773)
                     /gene="bacA"
                     /locus_tag="OQP62_001088"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HCS1720695.1"
                     /translation="MSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDT
                     AKTFEVVIQLGSILAVVVMFWRRLFGLIGIHFGRPLQREGESKGRLTLIHILLGMIPA
                     VVLGLVFHDTIKSLFNPINVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFMI
                     GCFQCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAVPMMMGATVLDLYKSWSF
                     LTAADIPMFAVGFVTAFVVALIAIKTFLQLIKRISFIPFAIYRFVVAAAVYVVFF"
     gene            complement(16871..17230)
                     /gene="folB"
                     /locus_tag="OQP62_001089"
     CDS             complement(16871..17230)
                     /gene="folB"
                     /locus_tag="OQP62_001089"
                     /EC_number="4.1.2.25"
                     /EC_number="5.1.99.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708868.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional dihydroneopterin
                     aldolase/7,8-dihydroneopterin epimerase"
                     /protein_id="HCS1720696.1"
                     /translation="MDIVFIEQLSVITTIGVYDWEQTIEQKLVFDIEMAWDNRKSAKS
                     DDVADCLSYADIADTVINHVEGGRFALVERVAEEVADLLLSRFNSPWVRIKLSKPSAV
                     ARAANVGVIIERGNNLK"
     gene            17337..17948
                     /gene="plsY"
                     /locus_tag="OQP62_001090"
     CDS             17337..17948
                     /gene="plsY"
                     /locus_tag="OQP62_001090"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HCS1720697.1"
                     /translation="MSAIAPGMILFAYLCGSISSAILVCRIAGLPDPRESGSGNPGAT
                     NVLRIGGKGAAVAVLIFDILKGMLPVWGAYALGVTPFWLGLIAIAACLGHIWPVFFGF
                     KGGKGVATAFGAIAPIGWDLTGVMAGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKP
                     QFTFPVSMLSCLILLRHHDNIQRLWRRQETKIWTKLKKKRQKD"
     gene            17947..18075
                     /locus_tag="OQP62_001091"
                     /pseudo
     CDS             17947..18075
                     /locus_tag="OQP62_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311971.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase"
     gene            18077..18157
                     /locus_tag="OQP62_001092"
                     /pseudo
     CDS             18077..18157
                     /locus_tag="OQP62_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311973.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:sulfate symporter"
     gene            complement(18198..19211)
                     /gene="tsaD"
                     /locus_tag="OQP62_001093"
     CDS             complement(18198..19211)
                     /gene="tsaD"
                     /locus_tag="OQP62_001093"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001264383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HCS1720698.1"
                     /translation="MRVLGIETSCDETGIAIYDDKKGLLANQLYSQVKLHADYGGVVP
                     ELASRDHVRKTVPLIQAALKEAALTASDIDAVAYTAGPGLVGALLVGATVGRSLAFAW
                     NVPAIPVHHMEGHLLAPMLEDNPPDFPFVALLVSGGHTQLISVTGIGQYELLGESIDD
                     AAGEAFDKTAKLLGLDYPGGPMLSKMASQGTAGRFVFPRPMTDRPGLDFSFSGLKTFA
                     ANTIRSNGDDEQTRADIARAFEDAVVDTLMIKCKRALESTGFKRLVMAGGVSANRTLR
                     AKLAEMMQKRRGEVFYARPEFCTDNGAMIAYAGMVRFKAGVTADLGVTVRPRWPLAEL
                     PAA"
     gene            19439..19654
                     /gene="rpsU"
                     /locus_tag="OQP62_001094"
     CDS             19439..19654
                     /gene="rpsU"
                     /locus_tag="OQP62_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HCS1720699.1"
                     /translation="MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTE
                     RKRAKASAVKRHAKKLARENARRTRLY"
     gene            19890..21635
                     /gene="dnaG"
                     /locus_tag="OQP62_001095"
     CDS             19890..21635
                     /gene="dnaG"
                     /locus_tag="OQP62_001095"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HCS1720700.1"
                     /translation="MAGRIPRVFINDLLARTDIVDLIDVRVKLKKQGKNYHACCPFHN
                     EKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAG
                     TGLSQIERHQRQNLYQLMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGF
                     APPGWDNALKRFGNNSDNKALLLDAGMLVNNEQGSTYDRFRNRVMFPIRDKRGRVIGF
                     GGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQY
                     DINYAVASLGTSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQ
                     VRFMFLPDGEDPDTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLA
                     ALALPLINQVPGDTHRIQLRQTLGLKLGIFDDSQLDRLVPKQAESGVSRPAPQLKRTT
                     MRILIGLLVQNPDLAPLVPPLDALDQNKLPGLGLFKELVKTCLAQPGLTTGQLLELYR
                     GTNDAATLEKLSMWDDIADKAIAEKTFTDSLNHMFDSLLQLRQEELIARDRTHGLSSE
                     ERRELWTLNQELARK"
     gene            21785..23632
                     /gene="rpoD"
                     /locus_tag="OQP62_001096"
     CDS             21785..23632
                     /gene="rpoD"
                     /locus_tag="OQP62_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HCS1720701.1"
                     /translation="MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDI
                     IQMINDMGIQVMEEAPDADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRM
                     YMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARL
                     SDLITGFVDPNAEEEMAPTATHVGSELSQEDLDDDEDEDEEDGDDDAADDDNSIDPEL
                     AREKFAELRAQYVVTRDTIKAKGRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMR
                     VMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSETWFNAAIAMNKPWSEKLHD
                     VAEEVQRCLQKLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISI
                     AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR
                     TIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPIS
                     METPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFG
                     IDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD"
     gene            complement(23756..24262)
                     /gene="mug"
                     /locus_tag="OQP62_001097"
     CDS             complement(23756..24262)
                     /gene="mug"
                     /locus_tag="OQP62_001097"
                     /EC_number="3.2.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G/U mismatch-specific DNA glycosylase"
                     /protein_id="HCS1720702.1"
                     /translation="MVKDILAPGLRVVFCGINPGLSSANTGFPFAHPANRFWKVIHLA
                     GFTDRQLKPEEAEKLLDFRCGVTKLVDRPTVQATEVKLHELRSGGRNLIEKIEDYQPA
                     ALAVLGKQAFEQGFSQRGIAWGKQKIAIGATMVWVLPNPSGLNRIKTEKLVEAYRELD
                     QALIMRGL"
     gene            24388..24463
                     /locus_tag="OQP62_001098"
     tRNA            24388..24463
                     /locus_tag="OQP62_001098"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:24421..24423,aa:Ile,seq:cat)
     gene            complement(24543..25310)
                     /locus_tag="OQP62_001099"
     CDS             complement(24543..25310)
                     /locus_tag="OQP62_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore-interacting protein"
                     /protein_id="HCS1720703.1"
                     /translation="MTTSSARYPQRVRNELRFRELTVLRVERISAGFQRIVLGGEALD
                     GFTSLGFDDHTKVFFPEPGCRFTPPTVTEEGIIWGEGVRPVSRDYTPLYDEAHRELAL
                     DFFIHDGGVASRWAMEAREGDTLTIGGPRGSLVVPEDYACQVYVCDESGMPALRRRLE
                     SLSRLPARPAVTALVSIQDAAYRDYLAHLTDITVEYVVGGDEQAMQTRLSQLAIPESD
                     YFIWITGEGKTVKRLSQCFEKGFDPHLVRAAAYWHRK"
     gene            25542..26189
                     /locus_tag="OQP62_001100"
     CDS             25542..26189
                     /locus_tag="OQP62_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HCS1720704.1"
                     /translation="MMQNQHEGCCKNQDHKHDGCCKDREHQHEGCHSAHQHENASCGG
                     EHRHGHGCGRHGQGGGRRQRFFGHGELRLVILDILTRDASHGYELIKAIENLTGGGYT
                     PSAGVIYPTLDFLQDQQFITISDEEGGRKKIAITANGAQWLDENREHLTHIQARLKAR
                     CVGMELRKNPQMKRALDNFKAVLDLRINHSDINDAQIKRIIGVIDRAALEIAELD"
     gene            complement(26186..27754)
                     /locus_tag="OQP62_001101"
     CDS             complement(26186..27754)
                     /locus_tag="OQP62_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP four helix bundle domain-containing protein"
                     /protein_id="HCS1720705.1"
                     /translation="MFLHNIKIRSKLFMAFGLFIVLMVVSSALSLFSLDRANTGMQDI
                     ITNDYPTTVKANLLIDNFNDFIIAQQLMLLDEEGRWSQSSQKELSEISQRISALLDEL
                     SRENSHDADSQKIINEIREARQQYLESRFRILKDIQSNNRQAAIQEMMTRTVQVQKVY
                     KDKVQELIAVQDALMHEASVQVKEDFKNNRTLLITLALISIAAGGVIGWYIVRSITRP
                     LDDAVRFAEAIADGDLTRHITTDYKDETGVLLQALMAMKTRLLDIVQEVQNGSESIST
                     AAAQIVAGNQDLAARTEEQASSVEETAASMEQITATVKNTADHTSEATKLSAGAASVV
                     KNNGEMMNQVTQKMRVINDTANRMSDIINIIDSIAFQTNILALNAAVEAARAGEHGRG
                     FAVVAGEVRQLAQKSASSASEIRNLIEDSTSQTQEGMHLVEKASALINGMVDNVEEMD
                     VILREIGQASREQTDGISQINSAIGLIDAATQQNSCLVEESVAAAASLNEQALHLKEL
                     VNVFRVREEDTQPA"
BASE COUNT         6845 a         7616 c         7061 g         6317 t
ORIGIN      
        1 attaggcgcg gtcgttgtcg atccttacgg taatgcccct ctcaccgcac tggtggaatt
       61 agatagccat attatttcag acgttaaagt tactgtacat ggcaaagggg aaaaaggcgt
      121 tcccgttact tataccgttg ggaaagagtc tttagaaacc tatgacggta ttcctatttt
      181 tggcctttat cagaaatttg ccaacaacgt cacggtagaa tataaagaaa acggcaaagc
      241 catgaaggat gactatgtgg tgcagacgtc cgccatcgtc aaccattata tggataaccg
      301 ttctatttca gatctccagc aaacgaaagt tattaaagtt gcgccaggat ttgaagatcg
      361 cctttatctg gtaaataccc atacctttac gccgcagggc gctgaatttc actggcacgg
      421 cgaaaaagat aaaaatgcgg gcattcttga tgccggcccg gcgggcgggg ctttgccttt
      481 cgatatcgcc ccttatacgt ttgtggtcga cacccagggt gaataccgct ggtggctgga
      541 tcaagatacc ttctacaacg gccacgatat gaatatcaac aaacgtggct acctgatggg
      601 gattcgtgaa acgcctcgcg gcacctttac cgcggtgcag ggccaacact ggtacgagtt
      661 tgacatgatg gggcaaattc ttgccgatca taaactgccg cgcgggttcc tggacgcatc
      721 tcatgaatcc atcgaaaccg tgaacggtac cgtactgctg cgcgtcggca aacgcgatta
      781 ccgcaaagaa gacggcatac atgttcatac tattcgtgac caaatcattg aggttgataa
      841 gtctggccgc gtagtagacg tttgggattt aaccaaaatc ctcgacccta tgcgtgatgc
      901 gctgctcggc gcgctggatg cgggcgcagt atgcgtgaac gtcgatctgg cccatgccgg
      961 acagcaggcg aaactcgaac cggatacgcc gtatggcgat gcgcttggcg ttggtgccgg
     1021 tcgtaactgg gcgcacgtca actctatcgc ttatgacgcg aaagacgact ccatcatcct
     1081 ttcttcccgc catcagggta ttgtaaaaat tggtcgcgat aagcaggtga aatggatact
     1141 ggcaccgtct aaaggctgga ataagcagct agccagtaaa ttgctgaaac cggtagacga
     1201 tcatggtaag ccgttgacct gtgacgaaaa cggcaagtgt aaggacaccg atttcgattt
     1261 cacctatacc caacatacgg catggctttc cagcaaaggt acgttaacgg tctttgataa
     1321 cggtgatggt cgcggcctgg agcaaccggc tctaccgacc atgaaatatt cccgttttgt
     1381 cgaatataag atcgatgaga agaaaggcac cgtacaacaa gtttgggaat acggtaaaga
     1441 acgtggatat gatttctata gtcctattac ctcggttgtt gaatatcaaa aagaccgcga
     1501 caccatgttc ggctttggcg gttctattaa cctgttcgac gttggtaaac caacagtcgg
     1561 caaactgaat gagattgact ataaaacgaa agaagtgaaa gttgaaattg atgtgctgtc
     1621 ggataaaccc aaccagactc actatcgtgc gttactggta catccaacac aaatgtttaa
     1681 ataaatcacg ggaaggaatt aatatgtcat ctaaatggat tacctcttta tttaaaagcg
     1741 tagtattaac cgcggcattg gtcactcctt ttgcggcatc ggcttttacc gagggcacag
     1801 attatatggt tctggagaaa ccaattccta atgcggataa aacgctgatt aaggtattta
     1861 gctacgcctg ccctttctgc tacaaatatg acaaagccgt aacaggtccg gtttctgata
     1921 aagtcgccga tctcgttacg ttcaccccgt tccacctgga aacaaaaggc gaatatggca
     1981 aacaggccag cgaagtattt gcagtcctga tcgccaaaga taaagctgcc gggatttcgt
     2041 tatttgatgc taaatcacaa ttcaaaaaag cgaagttcgc ctggtatacg gcttaccatg
     2101 ataagaaaga gcgctggtca gatgggaaag atccggcggc atttattaaa accgggctgg
     2161 acgccgcagg catgagccag gctgattttg aagcggcgct gaaagatcct gccgttcagg
     2221 agactctgga aaaatggaaa gcagcctatg acgttgccaa aattcagggt gttccggctt
     2281 acgtcgtcaa cggcaagtac cttatctaca ccaaaaacat caaatccatc gattctatgg
     2341 ctgaactcgt tcgggaactg gccactaaaa aataagcagg gaaacgatta tggattttat
     2401 taagggatta tggcgagacc tacgcgcaag accagtggat acgctggtga gatggcagga
     2461 acagcgcttt ctgtggctgt taatggccat cgcgatggga ggattaatta tcctggcgca
     2521 ctcgttcttc caaatctacc tctacatggc accgtgcgag cagtgtgttt acatccgtta
     2581 cgcgatgttt gtgatggtaa ttggcggggt gattgcggca ataaatccca aaaatattgt
     2641 gctgaagctg attggctgca tcgcggcgtt ttatggcagc attatgggca ttaagttttc
     2701 tattaagctt aatggtatcc atcatgcggt acataatgcg gaccccgatt cactttttgg
     2761 cgtgcaagga tgttcgactg acccgacctt tcctttcaac ttaccgttgg cggaatgggc
     2821 accggagtgg tttaaaccta ccggagactg cggttatgac gcgcctatcg tccctgatgg
     2881 cgtgacgctc agtagcgtac agcagtggtt tgtcgatctc taccagcagt ccgaaggctg
     2941 gtatctgctt ccgccctggc actttatgaa catggcgcag gcatgtatgt tggcctttgg
     3001 gttgtgcctg attctgctgc tggtgatgag cggcgcctgg gcattgaaac tggccagagg
     3061 caaataacct gaatagataa accaaagcag aggtctgcat tcaggcctct gcttttctca
     3121 caataatttt accattcagc ttattcgtcg ttctttgaaa ctgaacaata tggcaccgaa
     3181 ggaatacaaa aaagccgatg agatgtcatc ggcttttttc aaccatgatc cgttcgatca
     3241 gctggctttg cgctcatgcg cctggcggta agccaccaga tcttcaatcg tgaccaccgc
     3301 catattatgc tggcctgcaa acgcgataca ctccggcgcg cgcgccatcg tcccatcgtc
     3361 gttagtcaac tcgcacagta cacctgcagg tttaaaaccg gccagcgtca tcagatcgat
     3421 ggtcgcctcc gtatgaccgc cgcgcgtcag cacgccgccc gcctgagcgc gcagtgggaa
     3481 aacgtgcccc ggacggttaa gatcggacgg ttttgcgcca tccttaattg ccgcacgcac
     3541 cgtagtgaca cggtcagcgg cggaaacgcc ggtggtcacg ccttctgcgg cttcaatggt
     3601 cacggtaaaa ccggtgccgt aggcgctggt gttgttttcc accatcattg gcaaatcgag
     3661 ctgcttacgg cgatcttcag taatacacag gcaaacaata ccgctaccgt gacgaatggt
     3721 taacgccatc tgttctacgg tcattgtctc tgcggggaaa atcatatcgc cttcgttttc
     3781 acgatcttca tcatcaagca ccatcacacc gcgtccttca cgcagcgcat ccagtgcaag
     3841 ttcaacacgt tcaaaaggcg taccaaaaga ggaaagtagc gtctgattca tggtaaaaaa
     3901 acctcattaa cattatggtt accagaatca gggcagtctt aggagtgccg acaagcggca
     3961 aaaaaataac gtgagcgggt ccatgcccga ctggatcgtt accctctccc atccggactt
     4021 taaccgtcgg ccccggaatt acaccggatc tgctgacctt ttcgctatgg caaaaagcgc
     4081 tcgcgggctt tcaacctgct ctccgcgttc cgtcacggcg caccgtgatg agaaatgcgt
     4141 taaacatcgc tgatttaccg ccggtgggga atttcgcccc gccctgagaa taagcgggtt
     4201 aactataacg ctattgatta ccttcatcaa cgcctttact ccgtatgaca tcacacaatt
     4261 ctggtttatg gcgtccacat atcgcactac aataagagct aacacttacc agttcaggga
     4321 aaccacaatg attgacccga aaaaaattga gcaaatcgca cgccaggttc atgagtcaat
     4381 gccgaaaggt attcgcgagt tcggggaaga tatcgagaaa aaaatccgtc aaacgctgca
     4441 atctcagctg acgcgtctcg atctggtgag ccgcgaagag tttgatgtcc agactcaggt
     4501 cttgctgcgc acccgggaaa aactggcgct gctggagcaa cgcctcagcg aactggaagc
     4561 tcgcgacaag cctgaagaag taaaacctgc gcccgccatt ccgccagtcg atccacaaga
     4621 gtaaaaacgt gaacgggcct gacggcccgc tcatataaga tctgaataat gccctgcgcc
     4681 tgtataaggg agcctgcatt agtgttctaa ttctaacttt ttcgcctgag tcgcctgctg
     4741 gcagtaaagc gcgtaacgct tgcaaaacca gtcgcggtgc tcctcgtcca tattgccggt
     4801 taccgcctgg atatcaacag gacgcccctc cgcctgcatt ctggcaaagc tgcgcgccag
     4861 aaaatcgaaa ttatttaatg aatagacgtt attgttgttc atcagcatac cctccagtta
     4921 ttgaattctg ttaaggctat atgctttttc taatttcagt atttccctat atgtacggcg
     4981 gttttataca taacgtgcgc aaatttaatg cgcaaaatca caatattcac caaagataac
     5041 gacggataaa tcgcttttcg gacttaagga gatatgggtc acatgatatt gtaacgcaat
     5101 gaaataacaa gcatgaaaat tatcacgcga acatccttct gaaggcggcg acaaggatag
     5161 aaaatatgac cttatttgcg gagtataaca gcccctatct gtttgccatc gcgttcgttt
     5221 tctttatcgg cgtgctggag atgatttctc tgatttttgg ccactttctt tcaggcgcgc
     5281 tcgacgccca tctcgatcat tatgatgccc tgtcatccgg ccctgcgggc caggcgcttc
     5341 attatctgaa tattggacgc gttcccgccc tagtcgtcct ctgtctattg gccggctatt
     5401 tcggcctctt cggtatcctc atccagcatg gcgggatcat gctctggcag gcgccgctca
     5461 gcaatctgct gctggtcccg ttaagcattg tcctgtcggt ctttgccgtg cattacagcg
     5521 aaaaaatcct cgcgccctgg ctacccagag atgaaagctc cgccctccgg gaagaggaat
     5581 ttatcggcgg catggcgatt attaccggcc acgccgccgt cgccggaaca ccttgcgaag
     5641 gaaaatttac cgataagttc ggccagattc actatttact gctggaaccc gaaaagggaa
     5701 aagaatttaa aaaaggagac aaggtgctga ttgtctgccg actttccgca acgcgttatt
     5761 tggctgagcg taccttctat gtttaattga gaggaactta cataatggat gatgtttttg
     5821 gcatattgcc atcatggatg tttaccgcca tcgtggcggt tatcgtctta ctaattatcg
     5881 ggatcatttt tgctcgcctt tatcgccgcg catctgcgga acaggcgttt gtccgtaccg
     5941 ggcttggcgg gcaaaaagtg gtgatgagcg gcggcgctat tgtgatgcca atctttcacg
     6001 aaattattcc gatcaatatg aataccctaa aacttgaagt cagccgtgct accgtcgaca
     6061 gcctgatcac caaagatcgt atgcgcgttg acgtggtcgt tgctttcttc gtgcgtgtaa
     6121 aaccctctgt tgaaggtatt gccacctccg cacaaacgct tggccagcga acgctgtcac
     6181 cggaagatct gcgtatgctg gttgaggata aattcgttga cgccttacgc gctaccgcag
     6241 cccagatgac gatgcatgag ctacaggata cgcgtgaaaa cttcgttcag ggcgtacaaa
     6301 acaccgttgc ggaagatttg tcgaaaaacg gcctggagct ggaaagcgtc tcattaacca
     6361 actttaacca aacgtccaaa gagcatttca atccaaacaa tgcctttgat gccgaaggtc
     6421 tgacgaaact gacgcaggaa accgaacgcc gccgtcgtga acgtaatgaa gtggaacagg
     6481 atgtggaagt ggcggtgcgc gaaaagaacc gcgacgcgct tgaacgcaag ctggaaatcg
     6541 agcaacaaga agcctttatg actctggagc aggagcaaca ggttaaaacc cgcaccgccg
     6601 aacaaaacgc caaaattgcc gcttttgagg ccgagcgcca tcgtgaagca gaacagacgc
     6661 gcattcttgc tgagcggcag atccaggaga cggagatcga acgtgagcaa gcagtacggt
     6721 ccaggaaagt tgaggccgag cgtgaagtac gtattaaaga gatcgaacag caacaggtga
     6781 cagaaatcgc caaccagacg aaatctatcg ccattgccgc caaatccgag cagcaatcgc
     6841 aagcggaagc gcgcgccaac gacgcgctgg ccgatgcggt tcgcgcccag caaaacgtag
     6901 aaaccacccg ccagaccgcc gaagcggatc gcgccaagca ggtcgctctg atcgccgcgg
     6961 cgcaggatgc ggaaaccaaa gcggtcgaac tgaccgttcg ggcaaaagca gagaaagaag
     7021 cggcagaatt gcaagccgcc gccatcatcg aactggcgga agcagcgcgt aaaaaaggtc
     7081 tggcggaagc cgaagcgcaa cgggcgctga atgacgctat caacgtacta tctgacgaac
     7141 aaaccagcct caaatttaaa ctagcgctct tacaatcgtt gcctgctgtt attgagaagt
     7201 ctgttgaacc gatgaaatcc atcgacggca ttaagattat tcaggtcgat ggcctcaatc
     7261 gcggcgcgac ggcgggcgac gtcgccgctg gcggcgctaa cgggggaaac ctggcggaac
     7321 aagcgttatc tgccgcgctc acctatcgta cccaggcgcc gctgatcgat tcgctgttaa
     7381 acgagattgg catcgccggc ggctcgctaa aggcgctgac cacgccgttg gtttcatcgg
     7441 caacggatga gattaatcgc gaagcaacga taaaagagca ataacctccc cgccatatct
     7501 cctgtccctg gccataaggc cggggatttt tttatctttt ttccaccttg tctgtacaaa
     7561 gcgttatgac cagcaggcca ttttgcgtgg gcgatccagt aacgcaaaat cggcgggaga
     7621 aagcccttgc gccagacagg ccactcacca acaatcgcga tgtcagcaag gggctgaaac
     7681 gggaaagccc ctcccgagga aggggcttta ataaggaaag ggttatgatg caccaggtca
     7741 tcatactgat tgttctgtta ctgataagtt tcccagctta ctaacagcca atcagagggg
     7801 ggagagatcc cctctcaccc ttattccttt actttaggtc gaaaaaaaag cagcgtcaac
     7861 cgcgagatac gcgtcgaaac aaaatgtccg acgcaccttc aaaatcagcg cccgcagcgt
     7921 ctgtaacgcc tgatgacgcg gttttacttc tcgctctcgg tctggatctt tttgatgata
     7981 ttggtcgtgg aacaaccatc ttcgaagttc agcaccatga cttcgccgcc gttggcccag
     8041 acctcttcgc tgcccgcgat ctcttccggc ttatagtcgc cgccttttac cagcagatcc
     8101 ggcagaatac cggcaatcag tcgttgcggc gtatcctctt caaaagagac aacccagtcg
     8161 accgactcca gcgcgcccag cacgatcata cgctgttcga gcggattaac cggacggctt
     8221 tcgcctttca gacgtttagt cgaggcgtca ctattgaccg caacaatcag gcggtcgccc
     8281 agtttgcgcg cgttcgccag ataagagacg tggcccgcgt gcagaatatc gaaaacgccg
     8341 ttggtcatga ccactttctc gccacgctta cgcgcgctgg cgacggcctg tctcaactcc
     8401 tcttcggtca tgacgccgaa gccggtatcc gcgcgtccgc gcactgcgtt ttccagctca
     8461 ataggggaaa ccgttgacgt cccgagttta cctaccacta cgcccgccgc cgcattggcg
     8521 aaataacacg cctcctccag ggtatttccc gccgccagcg tcgccgccag cacgccgatc
     8581 accgtatcgc ccgcaccggt aacatcataa acttcctgcg cctgcgtcgg catatgtagc
     8641 ggcgctttat tcggttgcag cagcgtcatt ccctgttcgg aacgcgtgac caacagcgcg
     8701 gaaaggtcgt aatcggcaat gagcttcatg ccgcgttcaa ccagttcgtc ttcgctttta
     8761 catttccccg caaccgcctc gaattcagaa aggtttggcg tcagcagcgt ggcgccgcgg
     8821 taacgttcaa aatccgttcc tttcggatcg atgagcaccg gcacgcccgc ctggcgcgct
     8881 agggaaatca tagtctgcac gctggtcaga gcgcctttgg cataatcgga caataccagc
     8941 gcgccgatcg atcccagcgc ctggttgata cgctcatgca acggctgcgg gtccacgccc
     9001 tcaaagcctt cttcaaaatc aagacgaatg agctgctgat tacgtgatag tacgcgcagt
     9061 ttggtaatcg tcggatgcgt cggcacagaa acgaagtcgc acttcacatt gacctccgcc
     9121 agcgttttgc tcagcgcgcg cgcggcgtca tcaatacccg tcaggccgac cagacgggcg
     9181 ttcgctccca gagacgcaat gttcatcgcc acgttcgccg cgccgcccgg acgttcctca
     9241 acggtattta ccttaaccac gggcaccggc gcttccggtg aaatacggca agtggggcca
     9301 taccaatagc gatccagcat tacatcaccc acaaccatga cgcctgcacg ttcaaacgct
     9361 ggcagattta ctttcattcc tgtctcctga gagattcaaa atttgcgcgc gataatagca
     9421 taattcaaac ggctaccagc cacttccgcc agcttgcctg caccagcgcg cgctctttgc
     9481 taaaacatgt ctgcgccaca tgaccgggaa gctcctgcaa cgccaggtgg tgcagttcat
     9541 cacgcagtgt ggtgtaggct accgtcagcg cctgcgcttc gtgttcatcc ataatgccgt
     9601 tttgcgccag aagctccagg atgcgcacgt tatcagacca gcgcgttaat ttaggttttt
     9661 catgagcgta gcgcagtacc agatattgcg cgataaactc aatatccgta ataccgcctt
     9721 catcagcttt aatatcaaaa cgatcgcgat gcttattgcc gagatgcgcc cgcattttct
     9781 cgcgcatttc acgcacttca gtctgcaatg tcttaccgtc acgcgccgtc gtcatgatag
     9841 tgcggcgcac cgcatcaaac tgtgaggtaa gctgcgggtc gccatatacc acgcgagcgc
     9901 gtaccaacgc ctgatgttcc caggtccagg cttcatgctg ctgataatcg gcaaacgcgt
     9961 ccgctgaagt caccagcatt ccagccgcgc cagaggggcg tagacgcgca tccacctcat
    10021 acaaaatgcc ggaggaggtg cgcgtactga acagatgcat aatgcgctgc gccaggcgca
    10081 gataaaactg ccgcccgtcg atttcgcgtt cgccgttggt catgacgtcc atcggacagt
    10141 catgcaggaa gatgagatcc agatcggaac tgtagcccag ctcccatccg cccaacttgc
    10201 cataaccgac gaccgcaaac ccccgcccct ggcgttcgtc cagatgcgct ggctgaccat
    10261 aacgcgcaac catttgcgtc cacgcctgct gcaccacagc atcaatcatc gcctccgcca
    10321 gccatgtgag gtgatcgctc actttcatca ccggcagcgt accggcaata tccgccgccg
    10381 caatccgcaa aagctgtgcc tgtttaaact ggcgtaatgc ctccagttgt tgttcttcgt
    10441 cctcttccgg cacgcgcagc aaatactggc gtaattcgtc gcggtaagcg tcggtagccg
    10501 tcggctgata aagcgtgccg gggtcgagca gttcatcaag caacaacgga taacgcgcca
    10561 gttggctcgc tatcattggc gaagcggcgc agagcataat caggtgtttc agcgcgccgg
    10621 gaaattcgct cagcagctcc agataggtgg tgcgagtgac aatccccgcc agcaacggcg
    10681 ttatccgcga tagcgtaaca gcggcgtctt cgcgggaaca gacgtcagca agcaggtgcg
    10741 gcatcagttg gtccagcacc tgccgcccgc gcgggccgat agggcgttta tccagttcct
    10801 tacggaagtc agcgataagg gtcagaacct gtcgccgatc ctcatcggct aaatgcgcca
    10861 gcactggcgt cgaatcatcc tcctgtagcg catcctgcca tacttcacgc cacggctctg
    10921 aacgttcttc ctcctgcggg gtatcggctt catcatcgcc aattaattcg ttgaatacgc
    10981 ggcgtacatt agccatatga tccgtcagtt cgccaacaag ctgcggccag ttctccgcct
    11041 tcattcccca ggccagccgc gcccgattca gatcgtcggc aggcaacgtt tgcgtctgtt
    11101 cgtcattgat gctttgcagc agattctcca gacgacgtag aaaaagatag gccacgcgta
    11161 gttgcgccac gtcattctca ggcagcaaat gcagcgcagc gatagcatcc agcgtcggca
    11221 gtaacgaacg cgactgtagc gacggctcgc gtccgccgcg gatcagctgg aatacctgca
    11281 cgataaactc aatttcccga ataccgcccg cgccaagttt aatgttgtct ttcaaaccgc
    11341 ggcgtcgcac ttcgcgggcg atcatccctt tcatattacg tagcgactgg atgacgctga
    11401 aatcgatata gcggcggaaa acgaaaggcc gcagcatggc gcgtaattca cgagaccagg
    11461 cgtcgtcgtt atcgcccatt agccgcgctt tcaccatggc gtagcgttcc cagtcgcgtc
    11521 cttgctcctg atagtaatcc tccagcgcgg caaaactcag taccagcggg ccgctgtcgc
    11581 caaacggtcg caggcgcatg tctacccgat agacaaaacc atccattgtg ggctgatcca
    11641 gcgctttgat cagccgctgc ccgagacgcg taaaaaactg ggcgttatcg agttcacgac
    11701 gcccgccccg ggtctcgcca tgttccggcc aggcgaaaat cagatcgata tcagacgaaa
    11761 aattcagttc gccgccgccc agcttgccca tgcctaaaat cagcagcggc tgcggaacgc
    11821 cctgcgggtt acagggggtt ccccattcgc ggcaacaggc ggcatacagc cagtcgcgcg
    11881 ccccgacgat gagcgtctcc gccagatggc tcaactgttg taaaatagtc tcatcgtcca
    11941 ccagcgacag cgtctgtgcc caggcgatgc gtaccatgat gcgacgacga aaaagcctca
    12001 gctcacgcat cagcgaggcg tcgtcacaga cacctgccaa cgcctcctgt aaccagccag
    12061 cgtaatgtcg ccattcatca gcctgcggcg atgcggattc cagttcggca agccactccg
    12121 gatgcgctat cacgctatcc agcgcaaaat cgctaaatgt aagcactgac ttcgcctgcg
    12181 cgctaagcga tgtctcagta aatccttctg gtaggcgctc aacaacggtc tgccagtact
    12241 gcgataaggg tgaagagagc ggcgtcattt aggggatatc ctttaaataa tgccggatgg
    12301 cggcgtttcg cctgatccgg cctacaagtc cgcataccgt aagcctgata agcgcagcgt
    12361 catcaggcgc tttctacggt tctgattatc gttttccgct gtgcaaccag aacggctgct
    12421 ggttgatggc ctcattacgg aaatgttcaa tttcaatacg ttgcccggta ataatggcgt
    12481 gacgcaatcc ctgccagttt tccagccatg cctgcgcgac catcgcatca taatacccgg
    12541 ccagcagtaa aacgctgtcg atatcgcgag tcaaacgcgg caactggtcg cgatacttat
    12601 cacccagcgg ttgtccaaaa acttttttta attcagcagc atgacgagaa agatgaatgt
    12661 cggcgaaacg cttaaaagaa tcggccattt tggcctgcgc cttcgcgtcc agaaatggct
    12721 gccaggcttt cgtcaccagc cattccgtca atgccagttt cgccatcgcc gtttgcgtac
    12781 tataaacggc tgtgacggcg gacaccgcgg atgtcatcgt cgcttccgcc tgggtaagta
    12841 gatcacgtaa gtgagcgctc gctttacgtg gaacaatgcc accaaaaagc attaaggcat
    12901 ggcgcactaa tcccatagca tccagcacat gttctttcgc cgactcgtcg ccgcgcagcc
    12961 agagctcttc atggtactgc cactgtgaca acgccagatc cagcgaggcc tccagccctt
    13021 gctctaccgt agctttcgcg gcagtccgca gaattgccgt tggtgtattc tctcgcggcg
    13081 cattcccctg cgccaggtga taacctcgcg ccgccttact cagactgccc tgacgcaaac
    13141 cggtttgcga cagcagttgc ttcgccagtt ttaacacggc gcgcgtatcg ccgcgaagca
    13201 actcaagctc cagctcacaa attggttcgg caaactcgcc cgcttttacg tcgccgagat
    13261 cgagcgcaat ttcaatcctg ctgccgtcaa cgtccagaca ccatttttcc cggtaaaaat
    13321 cggtactgaa cagcggctgt acgcttgatg ccaggccgtc gggcaggttg ccatccggcc
    13381 agacctccgc cggaagttgc gtcagatcca gcacgggttc gcttagcgca acattgtatt
    13441 cgggtcgctg gtgcagcccg cccgttaccc ggccggcaat tttcatggtc atttcatagc
    13501 gcccattttc accacgaata cgcagcccca tatcatggcg gcgtagccag ttatcaggcg
    13561 tttcgaaata gatattcagc aactggctgg gcgcatgatg ctcgccgccg agcgtatgaa
    13621 gatgatttcg cagcgcatct acggcgtcgt gattgacgat aaactttaat tcgatttcct
    13681 gagccatggc cttgtactta tgggttatgt cacatctggg aagattcttg gcgaacttac
    13741 ccgcattatt tttgtcagta gatagtattt tgcgccaaat tgccatgcaa cgagcaattt
    13801 gacgggcgta aaagtttgac gtagcggcaa aggcgacaca gatgattccg attgatgtcg
    13861 actgctttgc gtagcgacac tgatgccgtt actatcgttc cactttctct gacaataacg
    13921 acagcctgat gccaaaatta cgcctgattg gactaacttt acttgcgctt agcgccaccg
    13981 ccgtctctca tgctgaagag acgcgttacg tttctgatga actgaatacc tgggtccgca
    14041 gcggtccggg agataattat cgccttgtgg gtaccgtcaa cgccggcgag gaagtcacgc
    14101 tcttacagag cgatgccaac tatggtcaaa ttaaagacag ttctggtcgt actgcctgga
    14161 taccgttaaa agaactgaat accacgccaa gcctgcgtac ccgcgtgccg gatctggaaa
    14221 atcaggtcaa aacgttaacc gataaactca acaatattga taccacgtgg aatcagcgca
    14281 ccgccgacat gcagcagaaa gtggcgcaaa gcgacagcgt catcaacggg ctaaaagaag
    14341 agaaccagaa gctgaaaaac gagctgattg tcgcgcagaa aaaagttagc gccgcgaatc
    14401 tgcaactgga tgacaaacag cgcaccatta ttatgcagtg gtttatgtat ggcggcggcg
    14461 tattgggtat tggcttgctg ttagggctgg tgctgccgca tatgatccca agccgtaaac
    14521 gcaaagaccg ctggatgaac taaatcgcct tctctgcggc actgtcttat cattagagga
    14581 tgatcgtttt taaaaggaaa gtggcgtgaa gatttatctg gtcggtggtg cggttcggga
    14641 tgcgttgtta gggctaccgg ttaaagataa agattgggtc gttgtcggcg ccacgccgca
    14701 ggagatgctt gatgcgggct accagcaggt aggccgtgat tttcctgtgt ttctccaccc
    14761 gcaaactcac gaagaatacg cgctggcgcg taccgagcgt aaatccggtt ccggctacac
    14821 gggtttcacc tgctatgccg cgccggacgt taccctggaa gccgacctcc agcgtcgcga
    14881 tctgaccatt aatgctctgg cgcgcgacga tgacggacag attatcgacc cttaccacgg
    14941 gcgccgggat ctggaggcgc gtctactgcg ccatgtctct ccggcgtttg gcgaagatcc
    15001 cttgcgcgta ttgcgcgtgg cgcgttttgc cgcccgttac gctcatctta gtttccgtat
    15061 cgccgatgaa acactgacgc taatgcgcga aatgaccgcg gcaggcgagc tggaacatct
    15121 gacgccggaa cgggtatgga aagagacgga aaatgcgctt accacccgca atccgcaggt
    15181 ttacttccag gtattgcgcg actgcggcgc cctgcgcgtc ctgtttccgg aaatcgacgc
    15241 cctgtttggc gtacccgcgc cggcaaagtg gcatccggaa attgataccg gagttcatac
    15301 gttgatgacg ctgtcgatgg ccgccatgct cagtccgcag cttgatgtcc gtttcgccac
    15361 gctttgtcat gatgtgggca aaggcttaac gccgaaaaac ctctggccgc gccatcatgg
    15421 ccacggcccg gtgggcgtga aactggtcga acagttatgc cagcgtttgc gcgtccccaa
    15481 tgacctgcgt gatttagcta aactggtcgc cgcgtaccac gatctgattc acacctttcc
    15541 gatactccag ccgaaaacga tcgttaagct gtttgacgcc attgatgcat ggcgtaaacc
    15601 gcagcgcgtc gagcagattg cgctgaccag cgaggccgat gtccgtggac gtaccggctt
    15661 tgaagcgtcg gattacccgc aggggcgctg gctgcgcgaa gcctggcagg tggcccaagc
    15721 ggtaccaacg aaagaggtgg tggaggccgg atttaagggc attgagattc gcgaggagct
    15781 gacgaagcga cgaattgcag cggtcgccaa ctggaaagag aagcgctgcc cgaaccccgc
    15841 cagctaaacg ccatccggca cgataaattg cctgatggcg ctgcgcttat cagaccgaca
    15901 aaactgttag gccggacaag gcggtacgcc gccatccggc acggtcaatc atcagaagaa
    15961 gacaacgtaa acggcagccg ccaccacaaa gcggtaaatc gcaaacggaa taaacgagat
    16021 acgcttaatc agttgcagga aggtcttgat ggcgatcagc gccaccacaa acgccgtcac
    16081 aaagcccacc gcgaacattg gaatatccgc tgcggtcagg aatgaccaac ttttgtagag
    16141 atccagaacc gttgcgccca tcatcatcgg cacagccagt aagaacgaga actcggaggc
    16201 ggcgtaacgg ctgacgccca tcagcatccc accggaaatg gtcgctccgg aacgcgagaa
    16261 gcccggccac agcgccagac actggaaaca gccaatcata aacgcctgac gatacgtcat
    16321 atcatccagc cccggcgcgc gcggttcttt cggcttcagg cactcggcgg caatcagcaa
    16381 cagaccgcct accaccagcg catacatcac gttaatcggg ttaaatagcg acttgatcgt
    16441 gtcatgaaag actaacccca gcaccaccgc cggaatcatg cccagcagga tgtgaatcaa
    16501 cgttaatcga cctttacttt caccttcacg ctgtagcggg cggccaaagt gaataccgat
    16561 gagaccaaac aaccgccgcc agaacatcac cacgaccgcc agaatagatc caagttgaat
    16621 caccacttcg aatgtcttgg ccgtatcgcc ttcaaacccc agcagatgac ccacaataat
    16681 catatggccc gtgctggata ccggcaaaaa ctccgtcaat ccttcgacca cacccaaaat
    16741 tgccgctatc agcagcgagt gcatatcgct catcaataaa cccctaaaat gaaaaacact
    16801 gcaaaaatgg atctcgcgtt aagaccccat atataaccgt ttggtttaaa aaatataaaa
    16861 ttatttattt ttatttcaga ttattgccac gctcaataat tacccctacg ttcgccgcgc
    16921 gcgcgacggc gctaggcttg ctcagtttga tgcgaaccca cggagaattg aatcggctaa
    16981 gcagtagatc cgccacctct tccgccacac gctcgaccag agcaaaacgc ccgccttcaa
    17041 catgatttat caccgtgtcg gcgatatccg cgtaacttag acaatctgcg acatcatcgc
    17101 ttttcgccga cttgcggtta tcccatgcca tttcgatatc gaacaccagt ttttgctcga
    17161 tagtctgttc ccagtcgtaa acaccgatag tggtgattac cgaaagttgc tctataaata
    17221 caatatccat cacgacctgc ctgctttttg gctaacccgg ataccacttc cggcgaaatg
    17281 tgcgtattat ccacagaaat agtaaataaa acgacacttt caatacggaa cagcttatga
    17341 gtgcaatcgc gcctggaatg atcctcttcg cgtacctctg cggctcaatt tccagtgcca
    17401 ttctggtttg ccgcatcgcc gggctgcccg atccgcgaga aagcggctcc ggcaacccgg
    17461 gcgcgacgaa cgtattacga atcggtggca agggagcggc tgtcgcggta cttatttttg
    17521 acatccttaa aggcatgttg cccgtctggg gcgcgtatgc gttaggcgtt acccctttct
    17581 ggctggggct tatcgctatc gccgcctgtc tgggacatat ctggccggtc ttttttggct
    17641 ttaaaggcgg gaaaggcgta gcaaccgcgt ttggcgccat tgcgcccatc ggctgggatt
    17701 taaccggcgt catggcaggc acctggctgc tgacggtcct gttaagcggt tattcatcgt
    17761 taggggcgat tgtcagcgcc ttgattgcgc cgttttacgt ctggtggttt aaaccgcagt
    17821 tcactttccc ggtgtcgatg ctgtcatgtc tcattttgct gcgccatcat gacaacatcc
    17881 agcgtctgtg gcgtcgccag gagacgaaaa tctggacgaa gctgaaaaag aaacgccaga
    17941 aagattgagc tggaactgcg tctggaagag ggcctcaacc gtctggggat cggcccacaa
    18001 gggttgaccg gcaatagctc ggtgataggc gtacatatcg aatccgccgc gcgtcaccct
    18061 tccaccattg gcgtggttag gcgcgatttt cggcctgatt ttcctggtgc tgctgatcgt
    18121 ctccaggctg ttgtggatgc ccatcgtttt gctgtaaatc cgttggggcg gcatgatgtc
    18181 gccccctttt tccgctttta cgccgccggc agctcggcca gcggccagcg cggacgtacc
    18241 gttacgccaa gatccgccgt aacgcccgcc ttaaaccgca ccattccggc ataggcgatc
    18301 atcgccccgt tgtcggtaca aaattccggg cgcgcataga acacttcgcc gcggcgtttt
    18361 tgcatcattt cggcaagctt cgcacgcagc gtgcggttag cgctgacgcc gcccgccatg
    18421 acaagacgct taaaaccggt gctttccagc gcgcgcttgc acttgatcat cagcgtatcc
    18481 acgaccgcat cttcaaaagc gcgcgcgata tcagcgcgag tttgttcgtc gtcgccatta
    18541 ctacgaatgg tgttagcggc aaaggttttc agaccggaaa aactaaaatc cagccccggg
    18601 cgatcggtca tcgggcgcgg aaagacaaaa cgccccgccg tcccctgcga cgccattttc
    18661 gacagcatcg ggccgccagg ataatccagc cccaacaatt tggcggtttt atcaaacgct
    18721 tcaccggcgg catcgtcaat cgactctccc agcagttcgt actgaccgat tccggtcacg
    18781 ctaatgagct gcgtatgtcc gccggagacc agcagcgcca caaacgggaa atccggaggg
    18841 ttatcttcca gcattggcgc cagcagatga ccttccatat ggtgtacagg aatggctggc
    18901 acattccagg caaatgccag cgaacgcccg acggttgcgc cgaccagcag cgcgccgacc
    18961 aagcccgggc ctgcggtata ggccaccgcg tcgatatcgc tcgccgtcag agcggcttct
    19021 tttaatgccg cctgaatcag cggcacggtt ttacgcacat gatcgcggga agccagttca
    19081 ggcactacgc cgccgtaatc agcatgtaat ttcacctgac tatacaattg gttggctaac
    19141 agaccttttt tgtcgtcgta aatagcgatg ccggtttcat cgcaagatgt ttcaataccc
    19201 agtacacgca tgacttgttt tacctcgctc taataccgcg cagtgtaggt cgaatgcggg
    19261 tggatgtata ccctcagtcc cgacttcgtg tatactccct ccccttataa aagtcccttt
    19321 caaaaaaggc cgcggtgctt tacaaagcag cagcaattgc agtaaaattc cgcaccattt
    19381 tgaaataagc tggcgttgat gccagcggca aaccgaatta atcaaaggtg agaggcacat
    19441 gccggtaatt aaagtacgtg aaaacgagcc gttcgacgta gctctgcgtc gcttcaagcg
    19501 ttcctgcgaa aaagcaggtg ttctggcgga agttcgtcgt cgtgagttct atgaaaaacc
    19561 gacgaccgaa cgtaagcgcg ctaaagcttc tgcagtgaaa cgtcacgcga agaaactggc
    19621 tcgcgaaaac gcacgccgta ctcgtctgta ctaatctttt gagagcgggc tgctctcaat
    19681 tcagatcgag ttgtagttgt aaggccgtgc ttccgaaagg aatgcgcggc ttgttttcgt
    19741 ttatgcatta gcatatacac aaaatcattc atgctacgtc caggcggcaa gagagcaagt
    19801 ccccggcgct tacgcaagtc agcgacaggg gtgagcaaac gtagccaaca ctacggcagc
    19861 ctgaagaatg acgtgtataa aaggggcata tggctggacg aatcccacgc gtatttatta
    19921 atgacctgct ggcgagaacc gatatcgtcg atctgatcga cgtgcgcgta aaactcaaga
    19981 aacagggcaa gaactatcac gcgtgttgtc cattccataa tgagaaaacc ccttctttca
    20041 ccgtaaacgg tgaaaaacag ttttatcact gctttggatg cggcgcgcat ggcaatgcga
    20101 tcgacttttt gatgaattac gacaagctcg aatttgtcga aaccgtcgaa gaattagcgg
    20161 ccatgcataa cctggaaatt ccctatgaag caggcaccgg gctcagccag atagagcgcc
    20221 atcaacggca aaacctctat cagttgatga atggtctgaa tgacttttat cagcagtcgc
    20281 ttacccatcc tgcggcaaaa cctgcgcgtg actatctgca aaagcgcggt ctgagcgctg
    20341 aaattattca gcgtttcgcc attggcttcg cgccgcctgg ttgggataac gcgttaaagc
    20401 gcttcggtaa taacagcgat aacaaggcat tgttgctgga tgccggaatg ctggtcaata
    20461 acgagcaggg cagcacttac gatcgtttcc gtaatcgggt catgttccct attcgggaca
    20521 aacgcggcag ggtgattggt tttggcggtc gagttctggg gaacgacacg ccgaaatacc
    20581 ttaactctcc ggaaacggac attttccata aaggccgcca gctatatggt ctttatgagg
    20641 ctcagcaata tagtgctgaa ccgcaacgct tgcttgtggt cgaaggttat atggatgtcg
    20701 tcgcactagc gcaatacgac attaactatg cggtcgcctc gctgggtacc tcaaccacgg
    20761 cagaccatat gcatatgtta ttccgggcga cgaacaacgt aatttgctgt tacgacggcg
    20821 accgggctgg ccgtgatgcc gcctggagag cgctggaaac agcaatgcct tatatgaccg
    20881 acggtcggca ggtacgcttt atgtttttac ctgacggcga agacccggat acgctggtgc
    20941 gtaaagaagg caaggcggct tttgaagcgc ggatggagca ggcgcagccg ctctctacgt
    21001 ttctgtttaa tagcctcctg ccgcaggtgg atttaagctc gccggatggc agcacgcagt
    21061 tagccgcgct ggcgctgccg ctcattaatc aggtgcctgg cgacacgcac cgtattcagc
    21121 tgcgccagac gttggggctg aagttaggca ttttcgatga tagtcagctt gatcgtttag
    21181 tgccaaaaca ggcggaaagc ggcgtttccc gcccggctcc gcagctaaaa cgcacgacca
    21241 tgcgtatact gataggatta ctggtgcaaa atccggatct cgcgccgtta gtgccgccct
    21301 tagacgcgct ggatcagaat aagctgcctg gacttggctt atttaaagaa ttggtcaaaa
    21361 cttgtttggc tcagccaggt cttactaccg gacaacttct ggaactctac cgtggcacaa
    21421 atgatgctgc gacccttgaa aaattatcga tgtgggacga tatagcagat aaggcgattg
    21481 ccgaaaagac ctttaccgac tcactcaacc atatgtttga ttcgctgctg caactgcgac
    21541 aagaagagct gatcgctcgc gatcgcactc acggtttaag cagcgaagaa cgccgagagc
    21601 tctggacgtt aaaccaggag ctggccagaa aatgaattta acggcttaaa tgccgcatat
    21661 cgttcgggaa gcccccgaca gccgcagtga gaggcagcgg ccaaaatata agtatgccct
    21721 cgctttaaat gtcgacagct ataccgtcga caccaatcaa acgaataagt gtggataccg
    21781 tcttatggag caaaacccgc agtcacagct gaaacttctt gtcacccgtg gtaaggagca
    21841 aggctatctg acctatgctg aggtcaatga ccatctgccg gaagatatcg tcgattcaga
    21901 tcaaattgaa gatatcatcc aaatgatcaa cgacatgggt attcaggtaa tggaagaagc
    21961 gcctgatgcc gatgatctgc tgctggctga aaataccacc agcaccgatg aagatgcgga
    22021 agaagctgct gcacaagttc tgtccagtgt tgagtctgaa atcggtcgta cgactgaccc
    22081 ggtacgcatg tatatgcgtg aaatgggcac tgttgaactg ttgacccggg aaggcgaaat
    22141 cgacatcgct aaacgtatcg aagacgggat caaccaggtt caatgctccg ttgccgaata
    22201 cccggaagcc attacctatc tgctggaaca gtacgatcgc gttgaggctg aagaggctcg
    22261 tttgtccgat cttatcaccg gctttgtcga tccgaacgcg gaagaagaga tggcgccgac
    22321 cgcaactcac gtcggttctg aactctccca ggaagacctg gatgatgacg aagacgaaga
    22381 tgaagaagac ggcgacgatg acgccgccga tgacgacaac agcattgacc ctgaactggc
    22441 acgcgaaaaa ttcgctgaac tgcgcgcgca atacgtcgtt acgcgcgaca ccatcaaagc
    22501 gaaaggccgc agccatgctg ccgcgcagga agagattctg aagctgtctg aagtgttcaa
    22561 acagttccgt ctggtaccga agcaattcga ctatctggtc aacagtatgc gcgtgatgat
    22621 ggatcgcgtg cgtactcagg aacgtctgat catgaagctc tgcgtcgagc agtgcaaaat
    22681 gccgaagaag aactttatca cgctgtttac cggtaacgaa accagcgaaa cctggttcaa
    22741 tgccgctatc gcgatgaaca aaccgtggtc ggaaaaactg cacgatgtcg cggaagaagt
    22801 gcaacgctgc ctgcaaaaac tgcggcagat agaagaagag accggtctga ccatcgaaca
    22861 ggtgaaagac atcaaccgtc gcatgtccat cggggaagcg aaagcccgcc gtgcgaaaaa
    22921 agagatggtt gaagcgaact tgcgtctggt tatttctatc gccaagaaat acaccaaccg
    22981 aggtctgcag ttcctcgatc tgattcagga aggcaacatc ggtctgatga aagcggtaga
    23041 taagttcgaa taccgtcgtg gttacaagtt ctccacctac gctacctggt ggattcgtca
    23101 ggcgatcacc cgctctatcg ccgaccaggc gcgcaccatc cgtattccgg tgcatatgat
    23161 tgagaccatc aacaagctca accgtatttc tcgccagatg ctgcaagaga tgggccgcga
    23221 gccaacgccg gaagagctgg ctgaacggat gctgatgccg gaagataaaa ttcgtaaggt
    23281 gctgaaaatc gccaaagagc ctatctccat ggaaacgccg atcggcgacg atgaagattc
    23341 gcatctgggt gatttcatcg aggatactac cctcgagctg ccgctggact ctgccaccac
    23401 cgagagcctg cgcgccgcca ctcacgacgt tttggctggc ctgaccgctc gtgaagcgaa
    23461 agtcctgcgt atgcgtttcg gtatcgatat gaacaccgac cacacgctgg aagaagtggg
    23521 taaacagttc gacgttaccc gcgaacgtat ccgtcagatc gaagcgaagg cgctgcgtaa
    23581 actgcgccac cctagccgtt ctgaagtgct gcgcagcttc ctcgacgatt aattcgccgt
    23641 acacgtataa acgccgccgc aaggcggcgt ttttttatca ggtcatgcgc gagcgttcta
    23701 tttggcctgc agaatctcta cacaacgcga gtattcgcgc cctcattccc cattgctata
    23761 gcccacgcat aatgagcgct tgatccagct cgcgataggc ctcgaccagt ttttccgttt
    23821 taattcggtt taagccgctg ggattcggca acacccacac catcgtcgcg ccaatggcga
    23881 tcttttgttt accccaggcg ataccgcgct ggctgaatcc ctgttcaaaa gcctgtttac
    23941 caagcaccgc cagcgccgcg ggctggtagt cctctatctt ttcaatcagg ttgcgtccgc
    24001 cgctacgtaa ttcatgcaac ttcacctcag tcgcttgtac cgtcggtcgg tcgacgagtt
    24061 tcgttacccc gcagcgaaaa tccagtaatt tttccgcctc ctccggtttc aactgtcgat
    24121 cggtgaaacc ggccaaatga ataactttcc aaaaacgatt cgcgggatgc gcaaacggaa
    24181 agccggtatt cgccgaggag agtcccggat tgatgccgca aaaaaccacc cgtagccctg
    24241 gcgccagtat gtccttaacc attattactc ctgagcaata caacgttctt taagtataac
    24301 gggttgaaaa cacattgttt ataaaaacag cacccgcacg gttacggctg gattacagcg
    24361 taaagttaca ttataatcca ccgccacggc cccttagctc agtggttaga gcaggcgact
    24421 cataatcgct tggtcgctgg ttcaagtcca gcaggggcca ccaaatttta gctttaaaat
    24481 catataatta agccactcta aagagtggct tttttgtttc tgacagggct cgccccatac
    24541 cgctatttac gatgccaata ggctgccgca cgtaccaggt gtggatcaaa ccccttttca
    24601 aagcactgac ttaaacgttt taccgttttg ccttcgccag taatccagat gaaatagtct
    24661 gattctggta ttgccagctg cgacaggcgc gtttgcattg cctgttcatc gccgccaaca
    24721 acatattcca cagtaatatc cgtcaaatgg gcgagataat cgcgatatgc ggcatcctga
    24781 atgctcacca gcgcggttac cgcagggcgc gcaggcagac ggctaagcga ttccagacga
    24841 cgacgtagcg caggcatacc ggactcatcg cagacataaa cctgacaagc ataatcttcc
    24901 ggcaccacca gcgaaccgcg cggcccgcca atcgtcagtg tatcgccttc acgggcttcc
    24961 attgcccaac ggctggctac gccgccatcg tggataaaga aatccagcgc cagctcgcga
    25021 tgcgcctcgt catacagcgg cgtgtaatcc ctggagaccg gacgaacgcc ctccccccag
    25081 ataatgcctt cctcagtgac tgtcgggggc gtaaagcgac agcctggctc agggaaaaaa
    25141 actttcgtgt gatcgtcaaa gcccagggag gtgaaaccgt ccagcgcctc gccgccaagt
    25201 acgatccgct gaaatcctgc gctaatacgt tctacccgca gaacggtcag ctcgcgaaaa
    25261 cgcagttcat tacgaacacg ctgtggatag cgtgcggatg atgtcgtcat tttttgcctt
    25321 cgtgaagtaa tacgatatat ctaaattaaa gttttaaatg ataatgattg ttaatcagta
    25381 aaaatgcaac tgttttttga tagtgttctg gcaacgcgta gctaactata accttaagat
    25441 aaaaccttat aaattaatag attatagcaa aaatggcttt tacccttgct aaaacccatc
    25501 atttagatat aaattagata tatctaaata agcaggagac aatgatgcaa aatcaacatg
    25561 aagggtgttg caaaaaccag gatcataagc acgacggctg ctgtaaagat cgagaacatc
    25621 agcatgaagg ctgccatagc gcgcatcagc atgagaacgc cagttgcggc ggcgaacatc
    25681 gtcacggaca cggctgtggt cgtcatggac agggcggtgg tcggcgtcag cgattttttg
    25741 gccacgggga acttcggctg gtcattcttg atatcctgac ccgggacgcc agccacggct
    25801 atgaactgat taaagcgata gaaaacctga cggggggcgg ctatacgcca agcgctggcg
    25861 tgatctaccc tacgctggat tttttacagg atcagcaatt tatcacgatt agcgacgaag
    25921 aaggcgggcg gaaaaaaatc gcgattaccg cgaacggcgc gcaatggctt gatgaaaatc
    25981 gcgaacatct gacgcatatt caggcgcggc taaaagcccg ttgtgtgggc atggagttac
    26041 gtaaaaatcc tcagatgaag cgggcgctgg ataacttcaa ggccgtgctg gatctgcgga
    26101 taaaccacag cgatatcaac gacgcgcaaa tcaaacgcat tatcggcgtg attgatcgcg
    26161 cggcgctgga aatcgccgaa ctggattaag cgggctgcgt gtcctcttcg cggacgcgga
    26221 acacgttaac cagctctttt aaatgtaacg cctgttcgtt cagcgacgct gcggcggcaa
    26281 cagactcttc cacaaggcag gagttttgtt gcgtggcggc gtcaatcagg ccaatcgcgc
    26341 tgttaatctg cgaaataccg tcagtttgct cgcggctggc ctgcccaatc tcacgtaata
    26401 tcacatccat ctcttcgacg ttgtccacca tgccattaat cagggcgctg gctttctcca
    26461 ccaggtgcat cccttcctga gtctgactgg ttgaatcttc aatcaaatta cggatttcac
    26521 tggccgacga ggcgctcttt tgcgccaact ggcgaacctc tccggcgaca acggcaaaac
    26581 cgcgcccatg ttcgcccgcg cgcgccgctt caaccgccgc gttcagcgcc agaatattgg
    26641 tctgaaaggc aatggaatca atgatattga tgatatccga catacgattt gccgtatcgt
    26701 taatgacgcg cattttctgc gtcacttgat tcatcatctc cccattgttt ttcactacgc
    26761 tggcggcgcc agcagagagt ttggtcgctt cactggtatg atcggctgtg tttttaaccg
    26821 tggcggtaat ctgttccatc gacgccgccg tttcttcaac cgagctggcc tgctcttccg
    26881 tacgcgccgc caaatcctgg ttaccggcga caatttgcgc cgccgccgtg gagatactct
    26941 ccgaaccgtt ttgcacttcc tgtacgatat ccagcagacg cgttttcatc gccattaacg
    27001 cttgcagtag tacgcctgtt tcatctttat agtcggtggt gatatggcga gtcagatcgc
    27061 catcggcaat cgcctcggca aagcgtaccg cgtcatcaag cggtcgggta atagaacgca
    27121 caatatacca tcctattacg cctccggcgg cgatgcttat cagcgccaaa gtgattaaca
    27181 acgtccgatt atttttaaaa tcctctttga cctgcacgct cgcttcatgc atcagcgcgt
    27241 cctgaacagc gataagttcc tggactttgt ccttatagac tttttgcacc tgcaccgttc
    27301 tggtcatcat ctcctgaatg gccgcctgac gattattgct ttgaatatct ttcaaaatac
    27361 ggaatctgga ctccaggtat tgctggcgcg cttcacggat ttcattaatg attttctgtg
    27421 aatccgcatc gtgactattt tccctggaaa gctcatccag taacgccgaa atgcgctggc
    27481 ttatctcact gagttctttc tgcgagctct ggctccagcg cccctcttca tccagtaaca
    27541 tgagctgctg cgcgatgatg aaatcattaa aattatcgat taacagattg gcttttaccg
    27601 tggtgggata atcattggta ataatgtcct gcatacccgt attagcccga tcaaggctaa
    27661 acaaagacag agcggaactc accaccatga gaacaatgaa taagccaaag gccataaata
    27721 attttgaacg tattttaatg ttatgcaaaa acatattttc tccctgggat cgcatatcct
    27781 catacaggaa gatttatcgg caataatgtt actaacttta tgatattgat cgcttttta
//
LOCUS       DAJVSD010000030        27307 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.030, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000030 DAJVSD010000000
VERSION     DAJVSD010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 27307)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27307)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27307
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.030"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..307)
                     /gene="tuf"
                     /locus_tag="OQP62_001102"
     CDS             complement(<1..307)
                     /gene="tuf"
                     /locus_tag="OQP62_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="EF-Tu; promotes GTP-dependent binding of
                     aminoacyl-tRNA to the A-site of ribosomes during protein
                     biosynthesis; when the tRNA anticodon matches the mRNA
                     codon, GTP hydrolysis results; the inactive EF-Tu-GDP
                     leaves the ribosome and release of GDP is promoted by
                     elongation factor Ts; many prokaryotes have two copies of
                     the gene encoding EF-Tu; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HCS1720706.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA
                     RAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGA
                     "
     gene            complement(379..2493)
                     /gene="fusA"
                     /locus_tag="OQP62_001103"
     CDS             complement(379..2493)
                     /gene="fusA"
                     /locus_tag="OQP62_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020455498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HCS1720707.1"
                     /translation="MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVGQIKT
                     RLGANPVPLQLAIGAEEGFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMQDLANEW
                     HQNLIESAAEASEELMEKYLGGEELTEEEIKQALRQRVLNNEIILVTCGSAFKNKGVQ
                     AMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLT
                     FFRVYSGVVNSGDTVLNSVKTARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVT
                     TGDTLCDPENPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTD
                     EESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYREAIRAKVTDIEGKHAKQ
                     SGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKSGPL
                     AGYPVVDLGVRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETP
                     EENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTM
                     EFLKYDDAPNNVAQAVIEARGK"
     gene            complement(2590..3060)
                     /gene="rpsG"
                     /locus_tag="OQP62_001104"
     CDS             complement(2590..3060)
                     /gene="rpsG"
                     /locus_tag="OQP62_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015873274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HCS1720708.1"
                     /translation="MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVY
                     SALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMR
                     WIVEAARKRGDKSMALRLANELSDAADNKGTAVKKREDVHRMAEANKAFAHYRW"
     gene            complement(3156..3530)
                     /gene="rpsL"
                     /locus_tag="OQP62_001105"
     CDS             complement(3156..3530)
                     /gene="rpsL"
                     /locus_tag="OQP62_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005306278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HCS1720709.1"
                     /translation="MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGAL
                     DCSGVKDRKQARSKYGVKRPKA"
     gene            complement(3656..3943)
                     /gene="tusB"
                     /locus_tag="OQP62_001106"
     CDS             complement(3656..3943)
                     /gene="tusB"
                     /locus_tag="OQP62_001106"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusB"
                     /protein_id="HCS1720710.1"
                     /translation="MLHTLPHCASGVDFPALLRLLKEGDALLLLQDGVTVAIEGNRFL
                     ESLRDAPITVYALKEDIDARGLGGQISDSVVRVDYTEFVRLTVKYANQMAW"
     gene            complement(3951..4307)
                     /gene="tusC"
                     /locus_tag="OQP62_001107"
     CDS             complement(3951..4307)
                     /gene="tusC"
                     /locus_tag="OQP62_001107"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusC"
                     /protein_id="HCS1720711.1"
                     /translation="MKRIAFVFSTAPHGSASGREGLDALLATSALTEALGVFFISDGV
                     FQLLPGQKPDAVLARDYIATFKLFDLYDIDQCWICAASLRERGLENVNFVVNATPLEP
                     VALRRELGNYDVILRF"
     gene            complement(4307..4693)
                     /gene="tusD"
                     /locus_tag="OQP62_001108"
     CDS             complement(4307..4693)
                     /gene="tusD"
                     /locus_tag="OQP62_001108"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusD"
                     /protein_id="HCS1720712.1"
                     /translation="MRYAIMVTGPAYGTQQASSALQFAHALLNEGHELASVFFYREGV
                     YNANLLTSPASDEYDLVRVWQKLNTQHGVALNICVAAALRRGIIDETEAGRLELPSAN
                     LQPGFTLSGLGALAEASLTCDRVVQF"
     gene            complement(4693..5415)
                     /locus_tag="OQP62_001109"
     CDS             complement(4693..5415)
                     /locus_tag="OQP62_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1720713.1"
                     /translation="MSRSLLTNETSELDLLDQRPFEQTDFDILKSYEAVVDGLAMLIG
                     SHCEIVLHSLQDLKCSAIRIANGEHTGRKIGSPITDLALRMLHDMTGADSSVSKCYFT
                     RAKSGVLMKSLTIAIRNREQRVIGLLCINMNLDVPFSQIMNTFIPPETPEVGSAVNFA
                     SSVEDLVTQTLEFTIEEVNADRNVSNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNI
                     SKHTVYLYIRQFKSGDFQGQDK"
     gene            complement(5692..6510)
                     /gene="fkpA"
                     /locus_tag="OQP62_001110"
     CDS             complement(5692..6510)
                     /gene="fkpA"
                     /locus_tag="OQP62_001110"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HCS1720714.1"
                     /translation="MKSLFKATLLATTMAVAMHVPITFAADAAKPAATADSKAAFKND
                     DQKAAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTL
                     QTFEARVKSAAQAKMEKDAADNEAKGKTFRDAFAKEKGVKTSSTGLLYKVEKEGTGEA
                     PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKSGKIKLV
                     IPPALAYGKTGVPGIPANSTLVFDVELLDIKPAPKADAKPADAADAKAADAAKK"
     gene            6730..6948
                     /locus_tag="OQP62_001111"
     CDS             6730..6948
                     /locus_tag="OQP62_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein SlyX"
                     /protein_id="HCS1720715.1"
                     /translation="MQDITMEARLAELESRLAFQEITIEELNLTVTAHEMEMAKLRNH
                     LRLLTEKLKASQPSNIASQAEETPPPHY"
     gene            complement(7135..7725)
                     /gene="slyD"
                     /locus_tag="OQP62_001112"
     CDS             complement(7135..7725)
                     /gene="slyD"
                     /locus_tag="OQP62_001112"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCS1720716.1"
                     /translation="MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISG
                     LETALEGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQ
                     GPVPVEITEVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHH
                     DHGEDGCCSGHGHDHGHEHGGEGCCGGGGKGSCGCH"
     gene            complement(7820..8020)
                     /locus_tag="OQP62_001113"
     CDS             complement(7820..8020)
                     /locus_tag="OQP62_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheV family putative metal-binding protein"
                     /protein_id="HCS1720717.1"
                     /translation="MAIRKRFIAGAKCPACQAQDTMAMWRENNVDIVECVKCGHQMRE
                     ADKDVREHVRKEEQVIGIFHPD"
     gene            complement(8030..9835)
                     /gene="kefB"
                     /locus_tag="OQP62_001114"
     CDS             complement(8030..9835)
                     /gene="kefB"
                     /locus_tag="OQP62_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     protein KefB"
                     /protein_id="HCS1720718.1"
                     /translation="MEGADLLTAGVLFLFAAVAAVPLAARLGIGAVLGYLLAGIAIGP
                     WGLGFISDVDEILHFSELGVVFLMFIIGLELNPSRLWQLRRSIFGVGAAQVLLSAAVL
                     AGLLMLADFLWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAV
                     IPALALVPLLAGSADEHFDWFKVAMKVLAFAVMLIGGRYLLRPVFRFIAASGVREVFT
                     AATLLLVLSAALFMDALGLSMALGTFIAGVLLAESEYRHELENAIDPFKGLLLGLFFI
                     SVGMSLNLGVLYTHLLWVAASVVILVVIKMLTLYLLARLYGIRSSERMQFASVLSQGG
                     EFAFVLFSTASSQRLFQGDQMALLLVTVTLSMMTTPLLMKGIDKWLSRRLNGPEENDE
                     KPWVEDDKPQVVVVGFGRFGQVIARLLMANKMRITVLERDIGAVNLMRKYGYKVYYGD
                     ATQVELLRSAGAEAAESIVITCNEPEDTMKLVALCQQHFPHLHILARARGRVEAHELL
                     QAGVTQFSRETFSSALELGRKTLVSLGMHPHQAQRAQLHFRRLDMRMLRELIPEHSDM
                     VQISRAREARRELEEIFQREMQQERRQLDGWDEFE"
     gene            complement(9835..10386)
                     /gene="kefG"
                     /locus_tag="OQP62_001115"
     CDS             complement(9835..10386)
                     /gene="kefG"
                     /locus_tag="OQP62_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     ancillary protein KefG"
                     /protein_id="HCS1720719.1"
                     /translation="MSQPAKVLLLYAHPESQDSVANRVLLKPAIQHNNVTVHDLYARY
                     PDFFIDTPYEQALLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLVG
                     KYWRSVITTGEPESAYRYDALNRYPMSDVLRPFELTAAMCRMHWMPPIIVYWARRQSP
                     QTLASHAKAYGEWLANPVSAGGY"
     gene            10652..12559
                     /locus_tag="OQP62_001116"
     CDS             10652..12559
                     /locus_tag="OQP62_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1720720.1"
                     /translation="MIVFSSLQIRRGVRVLLDNASATINPGQKVGLVGKNGCGKSTLL
                     ALLKNEISADAGSFTLPGTWQLAWVNQETPALPQPAIEYVIDGDREYRHLEAQLNDAN
                     ERNDGHAIASIHGKLDAIDAWTVRSRAASLLHGLGFSNDQLERPVSDFSGGWRMRLNL
                     AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYPGTLILISHDRDFLDPIVDKIIH
                     IEQQTLFEYTGNYSAFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQA
                     QSRIKMLERMELIAPAHVDNPFHFSFRAPESLPNPLLKMEKVSAGYGDRIILESIKLN
                     LVPGSRIGLLGRNGAGKSTLIKLLAGELEPLHGEIGLAKGIKLGYFAQHQLEFLRADE
                     SPLQHMARLAPQELEQKLRDYLGGFGFQGDKVTEETQRFSGGEKARLVLALIVWQRPN
                     LLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLIRSTTDDLYLVHDKKVEPF
                     DGDLEDYQQWLSDVQKQENQADDAPKENNANSAQSRKDQKRREAELRTLTQPLRKEIT
                     RLEKEMEKLNAQLAQAEEKLGDSSLYDPSRKAEMTECLQLQASAKSGLEECEMAWLEA
                     QEQLEQMMQND"
     gene            12704..12925
                     /locus_tag="OQP62_001117"
     CDS             12704..12925
                     /locus_tag="OQP62_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001054026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1720721.1"
                     /translation="MNLSITDDITFRKLTIFMMLVEKGNIARTAETLHTLEENVRCPL
                     FVHKGLFGTRPDIKVTVAVGSTGTEACVM"
     gene            complement(12927..13238)
                     /locus_tag="OQP62_001118"
     CDS             complement(12927..13238)
                     /locus_tag="OQP62_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monooxygenase"
                     /protein_id="HCS1720722.1"
                     /translation="MSKTLLQIHFNFSGPFGEEMTQQLVGLAESINEEPGFIWKIWTE
                     SEKNQQAGGIYLFESEETAQAYIKKHTARLKNLGVDEVTFTLFGVNDALTKINHGNLC
                     R"
     gene            13436..14423
                     /locus_tag="OQP62_001119"
                     /pseudo
     CDS             13436..14423
                     /locus_tag="OQP62_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462365.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
     gene            14420..14638
                     /locus_tag="OQP62_001120"
     CDS             14420..14638
                     /locus_tag="OQP62_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462366.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheU family protein"
                     /protein_id="HCS1720723.1"
                     /translation="MIIPWQGLAPDTLDNLIESFVLREGTDYGEHERSLEQKVADVKR
                     QLQSGEAVLVWSELHETVNIMPKKQFRE"
     gene            14690..15559
                     /locus_tag="OQP62_001121"
     CDS             14690..15559
                     /locus_tag="OQP62_001121"
                     /EC_number="2.7.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribulokinase"
                     /protein_id="HCS1720724.1"
                     /translation="MSAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDSF
                     HRYTRPEMDMAIRKARDAGRHISYFGPEANDFSLLEHTFIEYGQTGKGQSRKYLHTYD
                     EAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQHDVARHVDLLVGVVPIVNLE
                     WIQKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHINFQRVPTVDTSNPFA
                     AKGIPSLDESFVVIHFRNLEGIDFPWLLAMLQGSFISHINTLVVPGGKMGLAMELIML
                     PLVQRLMEGKKIE"
     gene            complement(15655..16059)
                     /locus_tag="OQP62_001122"
     CDS             complement(15655..16059)
                     /locus_tag="OQP62_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HCS1720725.1"
                     /translation="MQARVKWVEGLTFLGESSSGHQILMDGNSGDKAPSPMEMVLMAA
                     GGCSAIDVVSILQKGRQNVTNCEVKLTSERREDAPRLFTHINLHFIVTGGDLKEAAVA
                     RAVDLSAEKYCSVALMLEKAVNITHSYEVIAA"
     gene            16367..16999
                     /gene="crp"
                     /locus_tag="OQP62_001123"
     CDS             16367..16999
                     /gene="crp"
                     /locus_tag="OQP62_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016506431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cAMP-activated global transcriptional regulator
                     CRP"
                     /protein_id="HCS1720726.1"
                     /translation="MVLGKPQTDPALEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIV
                     KGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKK
                     FRQLIQVNPDILMRLSSQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
                     PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR"
     gene            17048..19135
                     /locus_tag="OQP62_001124"
                     /pseudo
     CDS             17048..19135
                     /locus_tag="OQP62_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462370.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
     gene            complement(19178..20395)
                     /locus_tag="OQP62_001125"
     CDS             complement(19178..20395)
                     /locus_tag="OQP62_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HCS1720727.1"
                     /translation="MATEQTAITRATFDEVILPVYAPADFIPVKGKGSRVWDQQGKEY
                     IDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALCLGRKLIDATFAERV
                     LFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFQNAFHGRSLFTVSVGGQPKYSDG
                     FGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDK
                     HQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAF
                     HVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSD
                     IRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADINEG
                     MQRFAQAVGKVVA"
     gene            complement(20481..21044)
                     /gene="pabA"
                     /locus_tag="OQP62_001126"
     CDS             complement(20481..21044)
                     /gene="pabA"
                     /locus_tag="OQP62_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component 2"
                     /protein_id="HCS1720728.1"
                     /translation="MILLIDNYDSFTWNLYQYFCELGAEVQVRRNDALTLAHIDALNP
                     QKIVISPGPCTPNDAGISLAVIRHYAGRIPMLGVCLGHQAMAQAFGASVVRAAKVMHG
                     KTSPVTHNGQGVFRGLPSPLTVTRYHSLIVDPATLPECFEITAWSETQEIMGIRHREW
                     DLEGVQFHPESILSEQGHALLENFLRR"
     gene            complement(21076..21678)
                     /locus_tag="OQP62_001127"
     CDS             complement(21076..21678)
                     /locus_tag="OQP62_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative adenosine monophosphate-protein
                     transferase Fic"
                     /protein_id="HCS1720729.1"
                     /translation="MSDKFGEGRDPYLYPGLNVMRNRLGIHQAQRLAQAAYEMTALRA
                     ATIELGPLVRGLPHLCAIHRQLYQDIFDWAGQLREVDIYQGDTRFCHFAYIEKEGNAL
                     MQDLEEEGYLVGLTHEKFVERLAHYYCEINVLHPFRLGSGLAQRIFFEQLALHAGYAL
                     SWQGIAVETWNQANQSGAMGDLSALRAIFQKAISEARETE"
     gene            complement(21668..21835)
                     /locus_tag="OQP62_001128"
     CDS             complement(21668..21835)
                     /locus_tag="OQP62_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfG family protein"
                     /protein_id="HCS1720730.1"
                     /translation="MKKLTDKQKSRFWEQRRNVNFQQSRRLEGIEIPLVTLTADEALA
                     RLDELRRHYER"
     gene            complement(21944..22516)
                     /gene="ppiA"
                     /locus_tag="OQP62_001129"
                     /gene_synonym="rotA"
     CDS             complement(21944..22516)
                     /gene="ppiA"
                     /locus_tag="OQP62_001129"
                     /gene_synonym="rotA"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase A"
                     /protein_id="HCS1720731.1"
                     /translation="MLKSTLAAVAAVFALSALSPVALAAKGDPHVLLTTSAGNIELEL
                     NSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFNEQMQQKKPNPPIKNEAD
                     NGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVAD
                     KISQVPTHDVGPYQNVPTKPVVILSAKVLP"
     gene            22793..23974
                     /gene="tsgA"
                     /locus_tag="OQP62_001130"
     CDS             22793..23974
                     /gene="tsgA"
                     /locus_tag="OQP62_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter TsgA"
                     /protein_id="HCS1720732.1"
                     /translation="MTNSNRIKLTWISFLSYALTGALVIVTGMVMGNIADYFQLPVSS
                     MSNTFTFLNAGILISIFLNAWLMEIVPLKTQLRFGFILMVLAVAGLMFSHSLALFSAA
                     MFVLGLVSGITMSIGTFLITQLYEGRQRGSRLLFTDSFFSMAGMIFPMVAAFLLARSI
                     EWYWVYACIGLVYLAIFILTFGCEFPALGKHAQHSQAPVVKEKWGIGVLFLAVAALCY
                     ILGQLGFISWVPEYAKGLGMSLNDAGALVSDFWMSYMFGMWAFSFILRFFDLQRILTV
                     LAGMAAILMYLFITGTQAHMPWFILTLGFFSSAIYTSIITLGSQQTKVASPKLVNFIL
                     TCGTIGTMLTFVVTGPIVAHSGPQAALLTANGLYAVVFVMCFALGFVSRHRQHSSPAA
                     H"
     gene            24291..26834
                     /gene="nirB"
                     /locus_tag="OQP62_001131"
     CDS             24291..26834
                     /gene="nirB"
                     /locus_tag="OQP62_001131"
                     /EC_number="1.7.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-nitrite reductase large subunit"
                     /protein_id="HCS1720733.1"
                     /translation="MSKVRLAIIGNGMVGHRFIEDLLDKSDASLFDITVFCEEPRKAY
                     DRVHLSSYFSHHTAEELSLVREGFYEKHGVKVLVGERAITINRQEKVIHSSAGRTVYY
                     DKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEA
                     AGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTQEIVQQGN
                     EARKTMRFADGSELEVDFIVFSTGIRPRDKLATQCGLAVAQRGGIVINDTCQTSDPDI
                     YAIGECASWNNRVYGLVAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVGGIG
                     DAHGRTPGARSYVYLDESKEVYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIE
                     LPENPDSLILPSHASSGKPAIGVDKLPDSAQICSCFDVTKGDLIAAINKGCHTVAALK
                     AETKAGTGCGGCIPLVTQVLNAELAKQGIEVNNNLCEHFAYSRQELFHLIRVEGIKTF
                     EELLTKHGKGYGCEVCKPTVGSLLASCWNEYILKPQHTPLQDTNDNFLANIQKDGTYS
                     VIPRSAGGEITPEGLVAVGRIAREFNLYTKITGSQRIGLFGAQKDDLPEIWRQLIEAG
                     FETGHAYAKALRMAKTCVGSTWCRYGVGDSVGFGVELENRYKGIRTPHKMKFGVSGCT
                     RECAEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLLAADLDRDTLIKYLDRFMMFY
                     IRTADKLTRTAPWLDNLEGGIEYLKSVIIDDKLGLNEHLEEEMARLRAAVVCEWTETV
                     NTPAAQVRFKHFINSDKRDPNVQVVPEREQHRPATPYERIPVTLVEENA"
     gene            26831..27157
                     /gene="nirD"
                     /locus_tag="OQP62_001132"
     CDS             26831..27157
                     /gene="nirD"
                     /locus_tag="OQP62_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase small subunit NirD"
                     /protein_id="HCS1720734.1"
                     /translation="MSQWQNICKIDDILPGTGVCALSGGEQVAIFRPYHSDQVFAISN
                     IDPFFEASVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYDARVKDG
                     VVQLRG"
BASE COUNT         6485 a         7523 c         7000 g         6299 t
ORIGIN      
        1 tcgcgccatc catctgcgca gcaccggtga tcatgttttt tacatagtcg gcgtgccccg
       61 ggcagtctac gtgtgcgtag tggcgggtcg gggtatcgta ttcaacgtga gaagtgttga
      121 tggtgatacc acgcgctttt tcttccggag cgttatcgat ctggtcgaat gcacgagcag
      181 caccgccgta ggttttagcc agtacggtgg tgattgcagc ggtcagggta gttttaccgt
      241 ggtcaacgtg gccgatggtg ccgacgttaa cgtgcggttt tgtacgttca aatttttctt
      301 tagacacggc tatattcctt actatagcgc tctccccttc aggagagagc acgggatttt
      361 ggtttttaac cctgcggctt atttaccacg ggcttcgatt acggcctgag caacgttgtt
      421 cggcgcatca tcatacttca ggaattccat agtgtacgat gcgcgacctt tggtcagaga
      481 acgcagctga gttgcatatc cgaacatttc agacagcggt acttcagcgt ggatcttaac
      541 gcctgtaact tcagattcct gacctttgag cataccacga cggcggctaa ggtcgccgat
      601 aacgtcaccg gtattctctt caggtgtttc tacttcaacc ttcatgatcg gctcaagcag
      661 aactggtttt gctttcttaa agccttcttt aaaggcgata gacgcagcca gtttaaacgc
      721 cagctcagag gagtcaacgt catggtaaga accgaagtgc agacgcacac cgagatcaac
      781 taccggataa cccgccagcg ggccagattt cagctgctcc tggatgcctt tatcaacggc
      841 cgggatgtac tcgccaggaa ttacaccacc tttgatgtcg ttgatgaact cgtaaccttt
      901 cgggttagag cccggctcca gcgggtacat gtcgataaca acatgaccat actgaccgcg
      961 accaccagac tgtttcgcgt gtttaccttc gatgtcggta actttcgcgc gaatcgcttc
     1021 gcggtaagca acctgaggtt tacccacgtt cgcttcaacg ttgaattcac gcttcatacg
     1081 gtcaacgatg atatctaggt gaagttcacc cataccagcg atgatggtct ggttagattc
     1141 ttcatcagtc catacgcgga acgacgggtc ttctttcgcc agacggccca gagccagacc
     1201 cattttttcc tggtcagctt tggttttcgg ttctaccgcg atggagatta ccggctcagg
     1261 gaattccata cgttccagaa tgatcgggtt ttccggatca cacagggtgt caccggtagt
     1321 cacgtctttc aggccgatag cagccgcgat gtcgcccgcg cgaacttctt tgatctcttc
     1381 acgtttgtta gcgtgcatct gaacgatacg accgaaacgc tcacgtgcgg ttttcacgga
     1441 gttcagtacg gtatcaccag agttaaccac accggagtac acacggaaga aggtcaggtt
     1501 acccacaaac gggtcggtag cgattttgaa cgccagcgca gagaacggct cgtcgtcgct
     1561 tgcgtgacgc tcagccggag tatctttacc gtcgtccaga ataccgttga tcgcaggtac
     1621 gtctaccggg gatggcaggt aatcaattac cgcatccagc atcgcctgaa cacctttgtt
     1681 cttaaatgca gaaccacagg ttaccaggat gatttcgttg ttcagaacgc gctgacgcag
     1741 agcttgtttg atctcttctt cagtcagttc ttcaccaccc aggtattttt ccatcagctc
     1801 ttcagaagct tctgcggcgg actcgatcag gttctggtgc cattcgttag ccaggtcctg
     1861 catgtcagcc gggatatctt cgtattcgaa ggtaacgccc tggtcggcat cgttccagtt
     1921 gatggctttc attttcacca ggtcaacaac gccggtgaaa ccttcttcag caccaattgc
     1981 cagctgcagc ggaaccgggt tcgcgcccag acgggttttg atctgaccaa caactttcag
     2041 gaagttcgcg cccatgcggt ccattttgtt aacgaacgca atgcgcggaa ctttgtattt
     2101 gtttgcctga cgccatacgg tttcagactg cggctgaaca ccaccaactg cgcagtaaac
     2161 cattaccgca ccatcgagaa cacgcatgga acgttctact tcgatagtga agtcaacgtg
     2221 ccccggggtg tcgatgatgt tgatgcgatg cggttcatac tgcttagcca taccagacca
     2281 gaatgcagta gtcgctgcgg aggtgatagt aataccacgc tcctgctcct gctccatcca
     2341 gtccatggta gctgcgccgt catgaacttc accgattttg tggtttacac cggtgtagaa
     2401 cagaatacgt tcggtagtag tggttttacc ggcgtcgatg tgcgcactga taccgatatt
     2461 acggtagcgt gcgatgggtg ttgtacgagc catttgattc ctcgttgata tctttaggcg
     2521 ttcagttaag ttatccaaaa cgggcgactt acctgaagcg cccgcctggt gactatgact
     2581 ccgaagggat taccaacggt agtgtgcgaa cgccttgttg gcttctgcca tacggtgaac
     2641 gtcttcacgt ttcttaactg cagtaccttt gttgtctgca gcgtcagaaa gttcgttcgc
     2701 caggcgcaga gccatggatt tatcaccgcg tttacgagca gcttctacga tccaacgcat
     2761 tgccagagca ttacgacgga ccggacggac ttcaactggt acctgataag tagaaccacc
     2821 tacacggcgg gatttaactt ctacagtcgg gcgaacgttt tcgagagcga cttcgaaagc
     2881 ttccagttca gatttaccag aacgctgagc cagggtctcc agcgcgctgt atacgattga
     2941 ttctgcagta gattttttac catctaccat caggatattg acaaatttag ccagcagttc
     3001 tgatccgaac ttcggatccg gcagaatttt acgctgacca atgacgcgac gacgtggcat
     3061 ggaaatactc cgttgttaat tcaggattgt ccaaaactct acgagtttag tttgacatta
     3121 atttaaaacg tttggcctta cttaacggag aaccattaag ccttaggacg cttcacgccg
     3181 tacttagaac gagcttgctt acggtcttta acgccggagc agtcaagcgc gccacgaacg
     3241 gtgtggtaac gaacacccgg gaggtcttta acacgaccgc cacggatcag gatcacggag
     3301 tgctcctgca ggttgtgacc ttcaccaccg atgtaggaag tcacttcaaa accgttagtc
     3361 agacgaacac ggcaaacttt acgcagtgcg gagttcggtt ttttaggagt ggtagtatat
     3421 acacgagtac atacgccacg tttttgcggg catgcttcca gcgcaggcac gttgcttttc
     3481 gcaactttgc gagcacgtgg tttgcgtacc agctggttaa ctgttgccat taaatagctc
     3541 ctggttttag cttttgcttc gtaaacacgt aataaaacgc cctcacacaa tatgaggacg
     3601 ccgaatttta gggcggtgtc gaaaaggtgt caagaaatat acaacgatcc cgccatcacc
     3661 aggccatctg gttggcatac ttaaccgtga gtctgacaaa ctcagtatag tcaaccctga
     3721 cgacactgtc tgaaatttga ccacccaggc cgcgagcgtc aatgtcttct ttcaaggcat
     3781 agaccgttat gggggcatcg cgcagacttt caaggaagcg gttaccttca atcgcgacgg
     3841 taacgccatc ctggagcagc aaaagcgcat cgccctcttt tagcaggcgc agcaaagcgg
     3901 gaaaatcaac gcccgaagcg caatgaggta aggtatgcag cataaacgcc tcagaatctc
     3961 aggatgacat catagttgcc aagctcgcgg cgtaacgcca cgggttccag cggcgtggcg
     4021 tttaccacaa aattaacgtt ttccagacca cgctcgcgca gcgatgccgc gcagatccag
     4081 cattgatcaa tatcgtacaa atcaaagagc ttgaaagtag caatatagtc acgcgccagc
     4141 acagcgtctg gtttttgccc cggtaataac tgaaagacgc cgtcgctgat aaaaaagacg
     4201 cccagcgctt ccgttagcgc tgacgtcgcc agcagcgcat ccagtccttc acggcctgag
     4261 gcgctaccgt gcggcgcggt ggaaaagaca aatgcaatac gtttcattaa aactgcacca
     4321 cccgatcgca ggtgagagaa gcctccgcca gcgcgcccag tccgcttagc gtaaagcccg
     4381 gctgaagatt ggcggacggc aactccagtc tgccggcttc agtttcatca ataataccgc
     4441 gacgaagcgc cgccgcgaca cagatgttca gcgctacgcc atgctgcgta ttcaatttct
     4501 gccagacgcg taccagatca tattcatcgc tcgccggcga ggtcaggaga ttggcgttat
     4561 agacaccttc ccgatagaaa aagacgctgg ctaactcatg cccctcattg agcagcgcgt
     4621 gggcgaactg caatgcgctg ctggcctgct gggtgccata tgcaggcccg gtgaccataa
     4681 tggcataacg cattatttat cctgcccctg aaaatcgccg cttttgaact ggcgaatata
     4741 gaggtaaacc gtgtgttttg agatattcag acgatcggct acctggttaa tggcgtcttt
     4801 aatatcgaaa atgccttttt cgtacaagtt aaggacgatc tgacgatttt tcgcattgtt
     4861 agagacatta cgatcggcat tcacttcttc gatcgtgaac tccagcgtct gggtgactaa
     4921 atcttcgact gaggaggcaa aattaaccgc tgagccgact tccggcgttt ccggcggaat
     4981 aaaggtattc ataatctgtg aaaatggcac atcaagattc atgttgatgc acagtagacc
     5041 aatgacgcgc tgctcgcggt tgcgaatggc aatcgtcaac gacttcatca agacaccgct
     5101 tttcgcgcgc gtaaaatagc atttcgacac gctactgtcc gcccctgtca tgtcgtgcaa
     5161 catgcgcaac gccaggtcgg taatcggcga gccaatttta cggcccgtat gttcgccatt
     5221 ggcaatacga atggctgaac attttagatc ctgcaaagag tgcaatacga tttcacaatg
     5281 ggaacctata agcatcgcta acccgtccac taccgcttcg taggatttca gaatatcgaa
     5341 gtcggtttgc tcgaagggac gctgatccag caaatcaagt tcactggttt cgttggttaa
     5401 aagcgacctg gacatgaaaa aaaacactcc ttttcaggag cctgtcgtta tgttttcagg
     5461 gcaggctcat tatttacgcg gatgattaaa ttaatacagt gagggttcat ctttccagta
     5521 ctaatttgct cgtctatttc agactacgtg tgcgttggcg gtcattcagc ctacggtctc
     5581 gcccttaacg accagcgcaa gcgccgttat ccgcaaatca aattatggtg agtaatatat
     5641 ccggcctgaa taaaaaaaac cgccgctatt acaagcggcg gctctcagtt tttatttttt
     5701 agcagcatct gcggctttag cgtcagccgc atcggcaggt ttagcatccg ctttcggcgc
     5761 tggtttgata tccagcagct ctacgtcgaa taccagggtg gagttcgcag ggatacccgg
     5821 aacgcccgtt ttaccgtagg ccagcgccgg tgggataacc agcttgatct tgccgctttt
     5881 cttaatattt ttcaggcctt cagtccagcc agggataacg ccgtccagac ggaaggagag
     5941 cggttcgccg cgcgtgtaag agttatcaaa ctctttaccg tcgatcagcg tacctttgta
     6001 gttcaccaca acggtatcgc tatctttcgg cgcctcgcct gtgccttctt tctctacttt
     6061 gtaaagcaga ccggtagagg aggttttcac gcctttctct ttagcaaaag cgtcacggaa
     6121 cgttttacct tttgcttcgt tatcggcagc gtctttttcc atcttcgcct gagcagcgct
     6181 cttcacacgt gcttcaaacg tctgcagcgt ttgctcaatt tcctgatcgg acagtttgct
     6241 cttatcggca aaggcatcct gaacgccggc aatcaactga tctttatcca gtttgatgcc
     6301 caacttttcc tgctctttaa gcgaattttc catgtaacga cccagcgagg cgcccagcgc
     6361 ataagccgct ttttgatcgt cgtttttaaa tgctgctttg ctatcagcgg tagctgccgg
     6421 tttcgccgca tcagcagcaa aagtgatcgg tacgtgcata gcaacggcca tcgtcgttgc
     6481 cagcagcgtg gctttaaaca gtgatttcat ccatatctcc agggccgggg catctcgccc
     6541 catgttaact tacgtaagaa gcgtactata aatcgttgca gaacaaatca acatacgaac
     6601 acgccctatt atcacttctt ttcagactct ttttgtttaa attagtttcg tagggcgcgt
     6661 aatggttgct gtgaaagccg gtaaagttaa gtagaatccg ccgacggaga caacataaag
     6721 aggtacatca tgcaggatat cacgatggaa gctcgtctgg ctgaactgga aagccgtctg
     6781 gcgttccagg agattaccat agaagaacta aacctgacgg taaccgcaca tgaaatggag
     6841 atggcgaagc tgcgcaatca tctgcgtttg ctcacggaaa agttaaaagc cagtcagccg
     6901 tcaaatatcg cctctcaggc agaagaaacg ccgccgccgc attattgaga cgaaaaaaag
     6961 cggggatacc cgcttttttt gtgcccgatg atttatcgaa ccaatgataa taacctaagg
     7021 atttcgagtc acagcaaagc ggcaagcttg aaaattcccc gggaacatag ataactatgt
     7081 gaccggggtt tgaaagcgta gccaacaccg cggtggcttg aaagacgacg gggattaatg
     7141 gcagccgcag ctgcctttac caccaccgcc gcagcagcct tcgccgccgt gctcgtgacc
     7201 atggtcatga ccatgaccgc tacagcagcc gtcttcaccg tgatcgtggt ggtgatcgtg
     7261 cgcgccgtga acatgaccgt gagccagttc ttcttcagtc gcttcacgaa tcgcaacaac
     7321 ttcgacgtta aatttcagat tctggcccgc cagcatgtgg ttaccatcaa ccacaacgtg
     7381 atcgtcttcc acttcggtaa tctctaccgg taccgggccc tggtcggttt ccgccaggaa
     7441 acgcatccct acctgcagtt catcaacgcc cataaagacg tctttaggca cacgctgcac
     7501 cagattttcg tcatactggc cgtaagcgtc gttcgcgcca acagcgacat caaatttgtc
     7561 gccaacttca tggccttcca gcgcggtttc cagaccagag atcagggagc cgtgaccgtg
     7621 caggtaatcc agcggcgcac tcaccggaga ctcatcaacc aacacaccgt cttctgtacg
     7681 tacctgatag gccaggctga ccaccaggtc ttttgctact ttcatgatat ctcctgagca
     7741 tgggaagaat agtggcgcag attgtagcgg aattctgcag ccgtgtaccc cttagcttaa
     7801 aaaaacctgc ggcatatcgc tagtccggat gaaaaatccc gatcacttgc tcttctttgc
     7861 gaacatgctc gcgaacgtct ttatccgctt cccgcatttg atgcccgcac ttaacgcatt
     7921 caacaatatc gacattattt tcacgccaca tcgccattgt atcctgcgcc tgacaggccg
     7981 gacatttcgc gcctgcaata aaacgtttac ggattgccat tgttcacctc tactcaaatt
     8041 catcccagcc atccaactgg cgccgttcct gttgcatttc gcgctgaaaa atctcctcca
     8101 gctcgcgtcg ggcctctctg gcgcgcgaaa tctgtaccat gtcgctatgc tccgggatca
     8161 gctcccgcaa cattcgcata tccagccgac gaaaatgcaa ctgcgcgcgt tgcgcctgat
     8221 gcggatgcat acctaacgac accagagttt tacgtcccag ttccagcgcg ctggaaaacg
     8281 tttcacggga aaactgcgtg acgccagcct gtaataactc atgggcctcc acacgtccac
     8341 gcgctcgcgc aagaatatgc agatgaggaa aatgctgctg acacagcgcc accagcttca
     8401 tcgtgtcttc cggttcatta cacgtgatga ctatcgactc cgccgcctcc gcgcccgcag
     8461 aacgcagcag ctcgacttgt gtagcgtcgc cgtaatacac tttataacca tatttgcgca
     8521 tcagattaac ggcgccgata tcgcgttcca gcacggtgat acgcatctta ttcgccatca
     8581 ataagcgagc gatcacctga ccaaaacggc caaagccgac gacaaccacc tggggcttat
     8641 catcctcaac ccacggcttt tcatcattct cttccgggcc attaagacgg cgcgataacc
     8701 acttatcaat ccctttcatc agtagcggcg tggtcatcat tgataatgtg acagtcacca
     8761 ataataacgc catctgatcg ccctgaaaca ggcgctgaga agaggcggta gaaaagagca
     8821 caaaagcgaa ctcgcccccc tgactcagca cgctggcaaa ctgcatccgt tcagaacttc
     8881 ttattccata tagccgcgcc agcagataca gcgtcagcat ttttatgacg accagaataa
     8941 caacgctcgc cgccacccac agtaaatggg tataaagtac gccgagattt agcgacatac
     9001 cgacggagat aaagaacagc ccaagcagta aacctttaaa gggatcgata gcattttcca
     9061 gctcatgccg gtattcgctc tctgccagta aaacgccggc aatgaaggtt cccagggcca
     9121 tcgacagtcc cagcgcatcc ataaataagg cggcgctcaa caccagcaac agcgtcgcgg
     9181 cagtgaagac ctcccgcacg ccagacgcag caataaaacg aaataccggg cgcagcaggt
     9241 aacgaccgcc aatcagcatt accgcgaaag ccagtacctt cattgccact ttaaaccagt
     9301 cgaaatgctc gtcggccgat cccgccaata aaggcaccaa cgccagcgcg gggatcaccg
     9361 ctaaatcctg aaacagtaag acggaaaacc ctaactgccc ggactcgcta cgattcatgc
     9421 ctttctcgcg catcagttgt agcgccatcg ccgtcgaaga catcgccagg ccaatcccgc
     9481 cgacgaccgc cgcctgccat aagaaatcag caagcatcaa taatcccgcc agcaccgccg
     9541 cgcttaacag cacctgagca gcgccgacgc cgaagataga gcgccgcagt tgccaaagcc
     9601 gtgacggatt gagttcgaga ccaatgataa acatcagaaa cacgacgccc agttcggaaa
     9661 agtgcaggat ctcgtcaaca tcgctgataa atcccagccc ccacggaccg atggcgattc
     9721 ccgccagcaa ataccctagc accgcgccga tgcccagcct cgcggccagc ggcaccgccg
     9781 ctaccgccgc gaagaggaac aacactcccg cggtcaataa atcagcacct tccatcaata
     9841 gcctcccgcg ctcacaggat tcgccagcca ctcgccatag gctttcgcat gactggccag
     9901 cgtctgcggc gactggcggc gcgcccagta cacaataatg ggcggcatcc agtgcatccg
     9961 gcacatggcc gcggtcagtt caaaagggcg gagtacatcg ctcattggat agcggtttag
    10021 cgcgtcatac cggtaagcgc tctccggctc gccggtcgta atcacgctac gccagtactt
    10081 tcccaccagt tggtttcccc ctggtccgct ggcgaaccct cgactcaaaa cgcgatcaag
    10141 ccattctttc agtaaagccg gacagctata ggtgtaaagg ggatgctgaa aaacaatgac
    10201 gtcgtgctca cgtaacaggg cttgttcata gggcgtatcg ataaaaaaat caggatagcg
    10261 cgcataaaga tcgtgcacgg ttacgttatt gtgctgtatg gccggtttaa gcagtacccg
    10321 gttagcaacc gagtcctgag attccggatg ggcatacaac agcaagactt tcgctggctg
    10381 agacatcaat ccccctcccg gttgttttgg gtcgatacat gccattcttc aggccgcttc
    10441 tacgttgaca gcgtttgttc aactcagaaa cgtactccat gtccgccgct ggggattaat
    10501 gagagatatt cttgtccctc accaaaggcg gcctgaatga ttttgtgtat cgttgttgtt
    10561 ttgagctacc attgcgctcc agcgcggcgg tacgcccgaa tattacatta tcataatgat
    10621 aaattaacat agtctgaaca tacggcgcct tatgattgtt ttctcctcgt tacaaattcg
    10681 tcgcggcgtg cgcgtcctac tggacaatgc ctcggctacc attaatccag gccagaaagt
    10741 cggcctggtg ggtaaaaacg gctgcggtaa atctaccctg ctggcattgc taaaaaatga
    10801 aatcagcgcc gatgccggga gttttaccct gcccggaacc tggcaattag cgtgggtgaa
    10861 tcaggaaaca cctgcgttgc ctcagccagc gattgagtat gtcattgacg gcgaccgtga
    10921 ataccggcat ctggaggcgc agcttaacga cgccaacgaa cgtaacgacg ggcatgctat
    10981 cgcctccata cacggtaagc tggacgccat cgacgcatgg accgttcgct cgcgcgccgc
    11041 cagcctgtta cacggcctcg gcttctctaa cgatcagctg gaacgtccgg tcagcgactt
    11101 ttccggcggc tggcggatgc gccttaatct ggcccaggcg ctgatttgcc gttccgattt
    11161 actgctgctc gacgaaccga ccaaccacct cgatctggat gccgttatct ggctggaaaa
    11221 atggctgaag agctatccag gcaccctgat tctgatctcc cacgatcgcg attttcttga
    11281 cccgatagtg gataaaatta tccatatcga acagcagact ctgttcgagt acaccggtaa
    11341 ctacagcgcg tttgaagttc agcgcgccac gcgcctggcg cagcagcagg cgatgtatga
    11401 gagtcagcag gagcgtgtgg cgcatctgca aagctacatc gaccgtttcc gcgccaaggc
    11461 caccaaggcc aagcaggcgc aaagccgtat caagatgctg gagcgtatgg agttgattgc
    11521 gccggctcat gtcgacaacc cgttccattt cagcttccgc gcgccggaaa gcctgccgaa
    11581 cccgctgctg aagatggaaa aagtcagcgc aggttatggc gatcgcatca ttctggaatc
    11641 catcaagctg aacctggtgc ccggctcgcg tatcggcctg ctgggccgca acggcgcggg
    11701 gaaatcgacg ctgatcaagc tgctggcggg cgaactggaa ccgttgcacg gtgaaatcgg
    11761 cctcgccaaa ggcattaagc tcggctactt cgcccagcac caactggagt tcctgcgcgc
    11821 cgatgaatcc ccgctgcagc atatggcgcg tctggcgccg caggaactgg agcagaagct
    11881 gcgcgactat ctcggcggct tcggtttcca gggcgacaaa gtaacggaag agacgcaacg
    11941 tttctccggc ggcgagaaag cgcgcctggt actggcgctg atcgtctggc agcgtccaaa
    12001 tctgctactg ctcgatgaac caaccaacca cctggatctc gacatgcgtc aggcgctcac
    12061 cgaagcgctg attgatttcg aaggcgcatt ggtcgtcgtg tcgcacgacc gccacctgat
    12121 tcgctccacc accgacgacc tctatctggt tcacgacaaa aaggtcgaac cgttcgacgg
    12181 cgacctggag gattatcagc agtggctgag cgacgtgcag aagcaggaaa accaggccga
    12241 cgacgcaccg aaggaaaaca acgccaacag cgctcagtca cgcaaagatc agaagcgtcg
    12301 cgaagccgag ctacgcactc taacgcagcc gctgcgtaaa gagattaccc gtctggaaaa
    12361 agagatggaa aagctcaacg cccaactggc gcaggcggaa gagaagcttg gcgacagcag
    12421 cctgtatgac ccaagccgta aagcggagat gaccgagtgt ctgcaactgc aggccagcgc
    12481 caaatccggg ctggaagaat gtgaaatggc atggcttgag gcgcaggagc agcttgagca
    12541 gatgatgcag aacgactaag agcctatccc attaggctat tttattcgcc attttagggc
    12601 cgggcagtgc tcgaaatcct cacggtttct gcgcgctgtc cggccccaaa ctggcttcaa
    12661 caattacgcc tactgggata ggctctaacg cacggggcgg acgatgaacc tgtctatcac
    12721 cgatgacatt accttccgca agctcaccat cttcatgatg cttgtggaga agggtaacat
    12781 cgcccgcacc gccgagacgc tgcacacgct ggaagagaac gttcgttgtc cactgttcgt
    12841 ccataaaggc ctcttcggta ctcgtcccga tataaaggtt accgttgcgg tcggcagcac
    12901 cggaacagaa gcctgcgtta tgtgagttag cggcaaaggt tgccgtgatt tattttcgtc
    12961 agcgcgtcgt tcacgccaaa taatgtaaac gtcacctcat caacgccaag atttttcaga
    13021 cgcgcagtgt gttttttaat ataagcctgc gccgtttctt cggattcaaa caagtaaatg
    13081 ccgccagctt gctggttttt ctcgctttct gtccagattt tccagatgaa gcccggctcc
    13141 tcattgatag actccgccag cccgaccagt tgctgagtca tctcctcgcc aaaagggccg
    13201 ctaaagttaa aatggatctg taaaagtgtc ttcgacatgc cttctccttg agtcacataa
    13261 ctatcgtgtt gccacactac cacgattaat tcggctgatg cagaggttca cgcgatttct
    13321 gtggggtatt gcgcgcgcct tgcataccgc cccctctggt gaaatgaggc gcaattttat
    13381 ttcgccagac gaccaattga acgtaaaatc acatattgac taatctgtga accttatgcg
    13441 cggtatagta ttgtttccaa ttatcaattg ttctggtgct atggttgaga tcacgtccac
    13501 agaaatgacc ccgcctgtca atgactcgca tgaatttatt cccatgcgtg gcattcgtaa
    13561 tcgccattta caaactatgc tgccacgttt aatccgccgc aaagtgaagt tcaacgccca
    13621 ctggcagcgg ctggagctac cggacggcga ttttgtcgat ctggcatgga gcgaagaacc
    13681 gcaacaggca aagcataaag cgcggctggc tgggcgtggt gatgcacttt cgcggctgta
    13741 gcggcgaacc caaccgtctg aatcgtattt accactccgg tgaaacggag gacggagcct
    13801 ggtttttacg ctggctacag cgggagttcg gcgccgttcc gacagccgcc gtgggctatt
    13861 cgctcggcgg taatatgctg gcgtgcctgc tggcgaaaga aggccgcgat attcccatcg
    13921 aggcggcggt aattgtttct gcgcctttcg ttctcgaagc ctgtagctac cacatggaca
    13981 aagggttttc ccgcgtctat cagcgttatt tgcttaatct gttaaaagcg aatgcgtcac
    14041 gcaagctggc ggcgtatccc gggtcgctgc cggtgaatct ggcgcaactg aaatcaatgc
    14101 gccgtattcg cgaatttgac gacctgatca ccgcgaaaat tcacggcttt gccgacgcca
    14161 tcgactacta tcgtcagtgt agcgccatgc cgttgcttaa ccagattgct aaaccgacgc
    14221 tgattattca cgctaaagac gatccgttta tggatcatca tgtgatccct aaagcggaag
    14281 atctgccccc gcaggtggag tatcagctga ctgagcatgg cggacacgta ggatttatcg
    14341 gcggtacgcc actgcgccct gaaatgtggc tggaacgccg aattcctgac tggctgacaa
    14401 cgtacctgga ggcgtcatca tgatcattcc ctggcagggg ctcgcccccg acacgctgga
    14461 caacctgatc gaaagctttg tgttgcgcga aggcaccgat tatggtgaac atgaacgttc
    14521 gcttgaacaa aaagtcgctg acgtaaaacg ccaactgcaa tccggcgagg ccgtgctggt
    14581 atggtctgaa ttacatgaaa cggtcaatat tatgccgaaa aagcagtttc gcgaataaaa
    14641 cgcctttgcc gacaatacat tattaataaa gctcaatcat ggagttgcca tgtcagccaa
    14701 acatccggtg atagcagtaa cagggtcaag cggcgcgggg accaccacca ccagcctcgc
    14761 gtttcgtaaa attttcgcgc agttaaatct gcatgccgcc gaggtggaag gcgacagttt
    14821 tcatcgttac acccgcccgg aaatggacat ggcgatccgc aaagcgcgtg acgccgggcg
    14881 gcatatcagc tatttcgggc ctgaagccaa tgacttcagc ctactggaac atacctttat
    14941 tgagtacggg cagacgggta aaggccagtc gcgtaaatat ctgcatacct atgatgaagc
    15001 cgtaccgtgg aatcaggttc ccggcacgtt taccccctgg cagccgcttc ctgaaccgac
    15061 cgatgtgctg ttttatgaag gactgcacgg cggcgtcgtc accccacaac atgatgtcgc
    15121 gcgtcatgtt gatctgttgg ttggcgtggt gcctatcgtc aaccttgagt ggattcagaa
    15181 actaatccgc gacaccagcg agcgcggaca ctcccgtgaa gcggtgatgg attccgtggt
    15241 gcgttccatg gacgactaca tcaattacat tacgccgcag ttctcgcgta cccatatcaa
    15301 cttccagcgc gtaccgaccg tcgacacgtc caatccgttc gccgcaaagg gtattccctc
    15361 gctggatgag agttttgtgg tgatccattt ccgcaacctg gaagggatcg attttccctg
    15421 gctcctggcg atgctccagg gctcgttcat ttctcacatt aatacattag tggtgccggg
    15481 cggcaaaatg gggctggcga tggagctgat tatgttgccg ctggtgcagc gattaatgga
    15541 aggcaaaaaa atcgaataac cgcggtgaaa tgcccgatgg cgctacgctt atcgggccta
    15601 cgagataaaa acgggtaggc cggataaggc cacgccgcca tccggcatca cgtgttacgc
    15661 cgcaatcact tcatacgaat gggtaatatt gaccgctttt tccagcatta gcgccaccga
    15721 gcaatatttt tccgcggaga gatcgacagc gcgcgcgacg gcagcctctt tcagatcgcc
    15781 gccggtaacg ataaaatgca aattaatgtg cgtaaacagg cgcggcgcgt cttcccggcg
    15841 ctcggatgtt agcttcactt cgcagttggt gacattctga cggccctttt gcagaattga
    15901 taccacatca atagcgctac atccgccagc cgccattaat accatctcca tcgggctcgg
    15961 cgctttgtca ccggagttac catccattaa aatctggtgg ccggaggagg actctccgag
    16021 gaacgtgagt ccttcaaccc actttacacg cgcttgcata tttcgtaact ccaatgtttc
    16081 aattttcctg aaagattacg cgcatacaac aaaactcgca atggaaggcg acctgggtca
    16141 tgctgaagcg agacaccagg agacacacgg cgaaagctat gctaaaacag acaagatgct
    16201 acagtaatac attgacgtac tgcatgtatg cagaggacat cacattacag gctacaatct
    16261 attttcgtag cccccttccc aggtagcggg aagtatattt ttgcaacctc agagacagtg
    16321 ccgttttctg gctctggaga cagcttataa cagaggataa ccgcgcatgg tgcttggcaa
    16381 accgcaaaca gacccggctc ttgaatggtt cttgtctcat tgccacattc ataagtaccc
    16441 gtcaaagagc acgctgattc accagggtga aaaagcagaa acgctgtact acatcgttaa
    16501 aggctccgtg gcagtgctga tcaaagatga agaagggaaa gaaatgatcc tttcttatct
    16561 gaatcagggt gattttattg gtgaactggg cctgtttgaa gaaggccagg aacgcagcgc
    16621 ctgggtacgt gcgaaaaccg catgtgaggt cgctgaaatt tcctacaaaa aatttcgcca
    16681 attaatccag gtcaacccgg atattctgat gcgcctctct tcccagatgg ctcgtcgctt
    16741 acaagtcacc tctgaaaaag taggtaacct cgccttcctt gacgtcaccg ggcgtatcgc
    16801 tcagacgctg ctgaatctgg cgaaacagcc cgatgccatg acgcacccgg atgggatgca
    16861 gatcaaaatc acccgtcagg aaatcggcca gatcgtcggc tgctcccgcg aaaccgttgg
    16921 tcgtattttg aaaatgctgg aagatcaaaa cctgatctcc gcgcatggca agaccatcgt
    16981 cgtctacggc acccgttaat cccgtcagaa tggcgcgttt tatcatgcgc catttttgtt
    17041 tgcatcgatg tggcgaagac tgatttatca cccagagatt aattacgcac tacggcaaac
    17101 gctggtgctg tgcctgcctg tggctgttgg tttattgata ggccagctac acctgggctt
    17161 gcttttctct ctcgttcccg cctgctgcaa cattgcaggt ctggataccc cgcacaaacg
    17221 cttttttaaa cgcctgatca tcggcgcgtc gctgttcgcc ggatgcagtc tggtaacgca
    17281 acttctgctg gcggaatcca tccccctgcc gttgatcctg accgggctca cgctggtgct
    17341 tggcgtgacg gcggaaatta gcccgcttca cgcgcggcta ctgccagcgt cgctgattgc
    17401 cgccatcttt accctgagcc ttgcgggata catgcccgtc tgggagccgc tgctcattta
    17461 tgcgctgggc acgctatggt acggcgtgtt taactggttt tggttctgac tatggcgcga
    17521 acagccgctg cgcgagtcat tgagtttgtt ataccgtgaa ctggccgatt attgtgaagc
    17581 gaaatacagc ctgctcaccc aacatatcga tccggaaaaa gcgctgcctc ccctgctgat
    17641 acgccagcaa aaagcggtcg atctcattac ccagtgttac caacagatgc atatgctttc
    17701 ggcgcacaac aataatgatt acaagcgtct actacgggct tttcaggaag cgatggattt
    17761 gcaggagcac atctccgtca gcttgcatca gccggaagag gtacagaaac tggtagaacg
    17821 cagccatgcg gaagaggtga ttcgctggaa tgcgcaaacg gtcgccgccc gtctgcgcgt
    17881 gctggcggat gacattcttt atcatcgtct gccgacgcgc ttctccatgg aaaaacagat
    17941 tggcgctctg gagaagatcg ctaatcagca tcctgaaaat ccggtaggcc agttctgcta
    18001 ttggcacttc agtcgaatcg cccgtgtgct gcgtactcag cggccgctgt acgcccgcga
    18061 cctgatggcc gataaacagc gtcgtctgcc gctacttccg gcgctgaaaa attatatgtc
    18121 tctaaaatcg ccggcgctac gcaacgccgg acgcatcagc gtgatgatga gcatcgccag
    18181 tctgatgggc agcgcgttgc acctgcctaa accgtactgg atcctcatga cggtgctgtt
    18241 tgtcacccaa aacagctatg gcgcgacgcg cgtacgtatt ctgcaccgtt cggtcggaac
    18301 gctggtcggc ctggtgattg ccggcgtcac gctgcactta catattcccg aaagcattac
    18361 gctggcggtc atgctggtac taacgctggc aagttatctg attattcgta aaaactacgg
    18421 ctgggcgacg gtcggcttta cggtgacggc ggtatacacc atccagttac tgacgttaaa
    18481 cggagagcag tttattgtgc cgaggctgat cgatacgctg attggctgtt taattgcctt
    18541 tggcggcatg gtctggctgt ggccgcaatg gcaaagcggg ctattacgta aaaacgccca
    18601 tgatgcgctg gaagccgatc aagaagctat ccgactgatc ctcagtaacg atccgcaggc
    18661 caccccgctc gcttatcaaa gaatgcgggt caaccaggcg cataacacgt tattcaactc
    18721 gttaaatcag gcaatgcagg aacccggatt caatacccac tatctgtcgg atatgaaact
    18781 gtgggtcacg cacagccagt ttattgtcga gcatatcaac gctatgacga cgctggcgcg
    18841 ggaacacacc atgctgacgc ctgatctggc gcagcgctat ctggaatctt gcgagattgc
    18901 gattcagcgc tgccagcagc gcctagagta cgacaggcca ggcggctccg gcgatgtcaa
    18961 tattctggag tcgccggaca tgccgtcaca tggcttattg agcactctgg aacaacattt
    19021 acagcgcatc attggccatc tgaacaccat gcacaccatt tcgtcgatgg cctggcgtca
    19081 gcgtccgcat cacggtatct ggctgagtaa gcggctacgg gatacaaaag gttaagaccg
    19141 actgccggat gcgctacgct tatccggcaa tccgccatca ggccaccacc ttccctaccg
    19201 cctgcgcaaa gcgctgcatt ccttcattga tatccgcctc ttccaccacc agcgacgggg
    19261 caaaacgcat cacgtcggct ccggcattga gcaccatcac gccggcctcc gcgcctgcgt
    19321 acagaaaatc gcgcgcccga cctttgtact tcggcttcag ttccgcgcca atcagcagcc
    19381 ccatgccgcg aatatcgctg aaaatgtcaa attgctcgtc aatcgcctgc aaatgttgca
    19441 caaactgttg ccgcttagtg tgaatgcctt gtagtacctc tggcgtatta ataatatcga
    19501 atgccgcgcc agccaccgca caggccagcg gattgccgcc ataggttgaa ccatgcgaac
    19561 cgacatggaa ggccgaggcg atctcctgcg tggtcagcat ggcgctcacc ggaaaaccgc
    19621 cgcctaacgc tttggcgctg gtgaggatat ccggcgtgac gccgtagtgc atataggcaa
    19681 acaggtctcc ggtgcgcccc atcccacact gcacttcatc aaacaccagc aacgcctgat
    19741 gcttgtcaca caggtcgcgt aaccctttga ggaattccgg tgtagccgcc tgcacgccgc
    19801 cttcaccctg aatcggctcg actaccaccg cgcaggtgtg gtcatccatt accgctttca
    19861 ccgcatgaag atcgttgaag ggaacgtgaa taatatcggc gggtttcggc ccaaagccgt
    19921 cggaatattt cggctgcccg cctacagaga cggtaaacaa ggaacggcca tgaaaggcgt
    19981 tctggaaggc aatgattttc gttttgaacg ggctatggcg cacgcaggca taatgacgcg
    20041 ccagtttaaa agcggtttcg ttcgcttcgg tgccggaatt cataaacagc acgcgctcgg
    20101 caaacgtggc gtcgatcagt ttacgtccca gacacaacgc cggttcattg gtaaaaacgt
    20161 tactggtatg ccacaaggtt tccccctggg atttcagcgc ctcgaccagt gccggatggc
    20221 aatggcccag cgcagtcact gcaatcccgc cggcgaaatc gatatactct ttgccctgct
    20281 gatcccatac gcggctgcct ttacctttga ccggaataaa gtccgccggt gcataaacag
    20341 gcagaattac ctcatcaaaa gttgcgcgcg taatagccgt ttgttcagtt gccatatcat
    20401 taccacccgg ttaagtagaa atgccagtga aattataatc acaaaatatg aataaaaaat
    20461 cactcaatag caaccacaaa tcaacgccgg aggaaatttt ccagcagagc gtgtccttgt
    20521 tcgctgagaa tactttccgg gtggaactgc acgccttcca gatcccactc gcggtggcga
    20581 atgcccataa tctcctgcgt ttcgctccag gcggtgatct caaaacactc aggcaacgtg
    20641 gcagggtcga caatcagcga gtggtaacgt gtcacggtta acgggctggg caatccccga
    20701 aacacgccct gtccattatg cgtaacaggt gacgttttac cgtgcatcac tttcgctgcc
    20761 cgcaccaccg acgcgccaaa ggcctgcgcc atcgcctgat gacccaggca aacgcccagc
    20821 atcggaatac gtccggcata atggcggatg accgccagtg aaatgccagc gtcatttggc
    20881 gtacaggggc caggagagat aacgattttt tgcgggttca aagcgtcaat gtgcgccagc
    20941 gtcagcgcat cattgcgccg aacctgcact tccgcgccca gttcacaaaa atactggtag
    21001 aggttccagg taaaggaatc atagttatcg ataagcagga tcatggcggc tccgggtcag
    21061 tagaaccgcc ctattttact cagtttcgcg agcttcgctt atcgctttct gaaaaatcgc
    21121 ccgcaaagcg gagagatcgc ccatcgcgcc gctctggttc gcctgattcc atgtttcaac
    21181 cgcaatacct tgccaactca gcgcgtagcc tgcatgtagc gccagttgtt caaagaagat
    21241 gcgctgcgcc agcccgctcc ccaaacgaaa cggatgaagc acattaattt cacagtagta
    21301 atgcgccagc cgctcgacaa acttctcgtg cgtcagacca accaggtagc cctcttcttc
    21361 cagatcctgc atcagggcat tgccctcttt ttcgatatag gcaaagtggc agaaacgggt
    21421 atcgccctgg taaatatcga cctcccgcag ttgccctgcc cagtcgaaaa tatcctgata
    21481 gagctggcga tgaatcgcgc acagatgagg caagccgcgt accagcggcc ccagttcaat
    21541 cgtagcggcg cggagcgcgg tcatttcgta tgccgcttgc gccagtcgct gggcctgatg
    21601 aatccccagc cgattacgca tcacattcag ccccggatag aggtacggat cgcgcccttc
    21661 gccaaattta tcgctcatag tgcctccgaa gctcgtcaag acgtgccagc gcttcatcgg
    21721 cggtcagggt tactaagggg atctcaatac cttcgagacg gcggctttgc tggaagttaa
    21781 cgttgcgccg ctgttcccaa aagcgtgact tttgtttatc ggtaagtttc ttcacctggc
    21841 ctccctgaat atgcctgtga ttgaccacaa gtataagcag caatttcagg ttacgctgag
    21901 acagggagaa aacgcgggcg gctcgcaccc gcgcaggcat gttttatggc aggactttcg
    21961 cggaaaggat aacgactggt tttgtcggca cattctgata aggcccgaca tcgtgcgtcg
    22021 gtacctgtga gattttatcg gcgacatcca taccttttac cactttacca aataccgcat
    22081 agccaaagtc gcgctggccg tggtcgagaa aagcgttatc cgcgacgtta ataaagaact
    22141 ggctggtggc gctgtcttta tctgcggtgc gagccatcgc gatcgtgccg cgagtattac
    22201 gcagaccgtt gtcggcttca ttcttaatag gcggattcgg tttcttctgc tgcatctgct
    22261 cgttaaaacc accaccctga atcataaagc caggaataac gcggtgaaac gtagtgttgt
    22321 tatagaaacc actgttgacg taatcgacaa agtttttcac agaaaccggc gctttctggc
    22381 tgttcagctc cagctcaata ttcccggcgg aggtggttaa cagcacatga ggatcacctt
    22441 ttgctgccaa cgctacggga gaaagagcag aaagagcgaa aacagctgcg acagccgcca
    22501 gagtcgattt gagcatgaga tttccttaaa gagagcagaa ataaagcaag tggaatgatt
    22561 ctaaagagcc ttcctgggcc aggccagccc tttacctaat tttacgtaca tgaaacaaat
    22621 gtaacgttac gacgcaacgc cttgtccttg caatatgatg tgacaaacat cacattaaaa
    22681 aatgtaatga acattactat cactaataat tatttaaata catcacaaaa gcgcttaaaa
    22741 tctgcccgct taacgcgccc tccacgcgct tcacttctct tcaaggccag acatgactaa
    22801 cagcaaccgc atcaagctca catggatcag ctttctttcc tacgccctga ccggggcgct
    22861 ggtgattgtc accgggatgg tgatgggaaa tatcgcagac tattttcagt tgcccgtttc
    22921 cagcatgagt aacaccttta ctttcctgaa tgccgggatt ttgatctcga tcttcctcaa
    22981 tgcgtggttg atggaaatcg tcccgctgaa aacacagcta cgctttggtt ttatcctgat
    23041 ggtactggcg gtggccgggc tgatgttcag ccatagcctg gcgttgttct cagcggcgat
    23101 gtttgtgctg gggctggtca gcgggatcac catgtcgatt ggcaccttcc tgattacgca
    23161 actgtatgaa gggcgtcagc gcggttcccg actgctgttt accgactcct tcttcagcat
    23221 ggcggggatg atttttccta tggtcgccgc cttcctgctg gcgcgtagta ttgagtggta
    23281 ctgggtctac gcctgcatcg gcctggtcta cctggcgatt tttatcctga ccttcggctg
    23341 tgaatttccg gcgctgggta aacatgcgca gcactctcag gcgcctgtcg tcaaagaaaa
    23401 atggggcatt ggcgtactgt ttctggccgt cgccgcgctg tgctatatcc tcggtcaatt
    23461 gggctttatc tcctgggtgc cggaatacgc caaaggcctc ggcatgagcc tgaatgacgc
    23521 cggggcgctg gtgagtgatt tctggatgtc ctatatgttt ggcatgtggg cgttcagctt
    23581 tatcctgcgc tttttcgatc tgcaacgcat cctgaccgta ctggcgggta tggcggcgat
    23641 actgatgtat ctgtttatta ccggcacgca ggcgcatatg ccgtggttta ttctgacgct
    23701 gggcttcttc tccagcgcca tttatacctc catcattacg ctgggatcgc agcaaacgaa
    23761 agtggcctcg cctaagctgg ttaactttat tctgacctgc ggcaccatcg gaacgatgct
    23821 gaccttcgtc gtcaccggcc cgattgtggc tcacagcggc ccacaggcgg cgttactcac
    23881 cgcgaatggt ctgtatgcgg tggtctttgt gatgtgcttt gcgctcggct ttgtctcccg
    23941 tcatcgccag catagttcgc cagcggcgca ttaataatga ttgccggatg gcgacgcgat
    24001 gcgtcttatc cggcctacag cgtaagctgt tggtaggccg gataaggcga cgtcgccctc
    24061 cggcactcta tccccccctg acgaggtagg cttgttggtc taaaaacccc tcattttgta
    24121 tgttatttgt acaaacctga aaagcctgac aattccgcca cttataaaaa cccagacaaa
    24181 tcagccatat acccattaag aggtatataa aggtgaattt gatttacatc aataagcggg
    24241 gttgctgaat cgttaaggta ggcggtaata gaaaagaaat cgaggcaaaa atgagcaaag
    24301 tcagactcgc tattatcggt aatggtatgg tcggccaccg ctttattgag gatctccttg
    24361 ataaatccga cgctagcctg ttcgacatta ccgtgttctg tgaagaaccc cgtaaagcct
    24421 atgaccgtgt ccacctgtca tcctacttct ctcaccacac cgcggaagag ctctctctgg
    24481 tgcgtgaagg attttacgag aagcacggcg taaaggtact ggttggcgaa cgcgcaatta
    24541 ccattaaccg tcaggagaaa gtgattcact ccagcgcggg tcgtaccgtt tattatgaca
    24601 agctgatcat ggcgaccggt tcctatccgt ggattccgcc gattaaaggc tccgaaaccc
    24661 aggattgctt cgtttaccgt accattgaag acctcaacgc tatcgaagcc tgcgcccgcc
    24721 gcagcaagcg cggggcggtg gtcggcggcg gtctgctggg gctggaagcc gctggcgcgc
    24781 tgaaaaacct cggcgtggaa acgcacgtca ttgaatttgc gccaatgctg atggcggaac
    24841 aactcgatca aatgggcggc gagcagctac gtcgcaagat cgaaagcatg ggcgtgcgtg
    24901 tacacaccag taaaaacacg caagagattg ttcagcaggg taacgaagcg cgtaagacta
    24961 tgcgttttgc cgatggcagc gagttggaag tcgattttat cgtcttctct accggtattc
    25021 gcccccgcga caagctggct acccagtgcg gtctggccgt cgcgcagcgc ggcgggatcg
    25081 tgattaacga cacctgccag acgtccgacc cggatatcta cgctatcggc gagtgcgcca
    25141 gttggaacaa ccgcgtttac ggtctggtcg caccgggcta taaaatggcc caggtcgccg
    25201 ttgaccatat cctcggcagt gaaaacgcct ttgaaggcgc ggatctcagc gccaaactga
    25261 agctgctggg cgtggacgtc ggcgggattg gcgatgcgca tggccgcacg ccgggcgcgc
    25321 gtagctacgt ttacctcgat gaaagcaaag aagtctacaa acgtcttatt gtcagcgaag
    25381 ataacaaaac gctgctcggc gcagtactgg tcggcgacac cagcgattac ggcaatttgc
    25441 tgcaactggt actgaacgcc atcgaactgc cggaaaaccc ggattcgctg atcctgccgt
    25501 cgcacgcgag cagtggtaaa cccgctatcg gcgtggataa actgccggac agcgcgcaga
    25561 tctgctcctg cttcgatgtg actaaaggcg atctgatcgc tgctatcaat aaaggctgcc
    25621 ataccgtggc agcgctgaaa gcggaaacca aagccggaac cggctgcggc ggctgcatcc
    25681 cgctggtgac gcaggtactg aacgccgaac tggcgaaaca gggtattgaa gtcaacaaca
    25741 acctgtgcga gcactttgct tattctcgtc aggaactgtt ccacttaatc cgcgtggaag
    25801 gtatcaaaac ctttgaagaa ctgctgacga aacacggtaa aggctacggc tgcgaagtgt
    25861 gtaagccaac cgtcggttcg ctgctggcgt cgtgctggaa cgaatacatc ctcaaaccgc
    25921 agcacacgcc gctacaggat actaacgata acttcctagc gaatattcag aaagacggca
    25981 cctactcggt gatcccgcgc tcggcgggtg gtgaaatcac gccggaaggt ctggtggccg
    26041 tgggtcgtat cgcccgcgag tttaacctct ataccaaaat caccggttct cagcgtatcg
    26101 gtctgttcgg cgcgcaaaaa gacgatctgc cggaaatctg gcgtcagttg attgaagccg
    26161 gtttcgaaac cggtcacgcg tacgccaaag cgctgcggat ggcgaaaacc tgcgtcggca
    26221 gcacctggtg ccgctacggc gtgggcgaca gcgtcggttt cggcgtggag ctggaaaacc
    26281 gctacaaagg cattcgtacc ccgcacaaaa tgaaattcgg cgtctccggc tgtacccgtg
    26341 aatgtgcgga agcacagggt aaagatgtcg gtatcatcgc cactgagaaa ggctggaacc
    26401 tgtacgtttg cggtaacggc gggatgaaac cgcgtcatgc ggatctgctg gcagccgatc
    26461 tcgatcgcga cacgctgatc aagtacctcg accgctttat gatgttctac atccgtaccg
    26521 ccgataagct gacgcgtacc gcgccgtggc tggataacct ggaaggcggc atcgaatatc
    26581 tgaagtcggt cattatcgac gataagctgg gcctgaacga acatctggaa gaagagatgg
    26641 cgcgcctgcg cgcagcggtg gtctgcgagt ggacggagac cgtcaacacg ccagcggcgc
    26701 aggttcgttt caaacacttc atcaacagcg acaaacgcga cccaaatgtc caggttgtgc
    26761 ctgaacgcga acagcatcgt ccggccacgc cgtatgaacg catcccggtc actctggtgg
    26821 aggaaaacgc atgagccagt ggcaaaacat ctgcaaaatt gatgacatcc tgccgggaac
    26881 cggcgtctgc gcgctgtcag gcggcgagca ggtggcgatt ttccgtcctt accatagcga
    26941 tcaggtgttt gcgatcagca acatcgaccc gttctttgag gccagtgtgc tgtctcgtgg
    27001 gctgattgcg gaacaccagg gcgaactgtg ggtcgccagc ccgttgaaaa agcagcgctt
    27061 tcgtttaagc gacgggctgt gcatggaaga tgagcagttc tctgtgaagc attacgacgc
    27121 gcgggtaaaa gacggcgtgg tgcagttgcg cggttaatta tttttgggag gcgcaacgcc
    27181 tccccttttt tgacgtattt gtaggtcttt tattggtagg cctgataagc gtagcgccat
    27241 caggcaattg caaaagcaca ttgccggatg gcggcataaa cgccttatcc ggcctacggt
    27301 tacgatt
//
LOCUS       DAJVSD010000031        27109 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.031, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000031 DAJVSD010000000
VERSION     DAJVSD010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 27109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27109
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.031"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            149..1729
                     /locus_tag="OQP62_001133"
     CDS             149..1729
                     /locus_tag="OQP62_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HCS1720735.1"
                     /translation="MEWIADPSIWAGLVTLIVIELVLGIDNLVFIAILAEKLPPGQRD
                     RARITGLILAMIMRLLLLASISWLVTLTKPLFSVQALSFSARDLIMLFGGFFLLFKAT
                     MELNERLEGKDSANPTQRKGAKFWAVVAQIVVLDAIFSLDSVITAVGMVDHLAVMMAA
                     VIIAISLMLLASKSLTRFVNNHPTIVILCLSFLLMIGFSLVAEGFGFHIPKGYLYAAI
                     GFSVMIEALNQLAIFNRRRFLSANHTLRQRTTEAVMRLISGKKEDAELDAETAAMLAD
                     HDDSQIFNPQERRMIERVLNLNQRTVSSIMTSRHDIEHIDLNAPEAEIRALLEKNQHT
                     RLVVTGENEQEDLLGVVHVIDLLQQSLRGEPLNLRALIRQPLVFPETLPLLPALEQFR
                     NARTHFAFVVDEFGSVEGIVTLSDVMETIAGNLPNEVEEIDARHDIQKNPDSSWTANG
                     HMPLEDLVQYVPLPLDEKREYHTIAGLLMEYLQRIPQTGEEVQVGDYLLKTLQVESHR
                     VQKVQLIPLHNGEPDQEM"
     gene            complement(1815..3671)
                     /gene="asmA"
                     /locus_tag="OQP62_001134"
     CDS             complement(1815..3671)
                     /gene="asmA"
                     /locus_tag="OQP62_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane assembly protein AsmA"
                     /protein_id="HCS1720736.1"
                     /translation="MRRFLTTLMILLVVLVAGFSALVLLVNPNDFRAYMVQQVAARSE
                     YQLQLDGPLRWHVWPQLSILSGRMTLTARGASEPLVRADNMRLDVALWPLLSHQLHVK
                     QVMLKGGVIQLTPQTEAVRSDDAPVAPKDNTLPDVAEDRGWSFDIRSLRVAGSVLVFQ
                     HENDDQVTVRDIRLNMEQDAEHRGTFDFSGRVNRDQRDLALSFSGTVDASDYPHNLTA
                     GIEQLRWQLQGADLPAQGIEGQGQLQAQWQEAQKRLSFNHLNLTANDSSLTGHVQVTL
                     AEQPEWQIDLRSSKLNLDNLLPHHSAVAQTGGAVSQGQNTLPLTRPVIASRVGAPPYQ
                     GLQSFTAEIALQADSVRWRGMDFTQVSTKMSNQTGLLDITELQGKLADGEMSLPGTLD
                     ARTASPRIEFHPRLNHVEIGTILKAFNYPISLTGKMSLVGDFSGADIDAEAFRHSWKG
                     KAHVDMSNTRLEGMNFQQLVQQAVERSGGDAQQSQENMDNATRLDRFTTDLTLNKGTL
                     TLDDMVGQSSMLALTGSGTLDLVKQSCDTQFNLRVLGGWNGDSNLITFLKETPVPLRV
                     YGKWQELNYTLQVEQLLRKHLQDEAKRRLNDWADRNKDTRNGKDVKKLLNKL"
     gene            complement(3710..4291)
                     /gene="dcd"
                     /locus_tag="OQP62_001135"
     CDS             complement(3710..4291)
                     /gene="dcd"
                     /locus_tag="OQP62_001135"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004942378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HCS1720737.1"
                     /translation="MRLCDRDIEAWLDEGRLSITPRPPVERINGATVDVRLGNKFRTF
                     RGHTAAFIDLSGPKDEVSAALDRVMSDEIVLPDGEAFYLHPGELALAVTFESVTLPPD
                     LVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSF
                     EPLSGPAARPYNRRQDAKYRDQQGAVASRIDKD"
     gene            complement(4382..5023)
                     /gene="udk"
                     /locus_tag="OQP62_001136"
     CDS             complement(4382..5023)
                     /gene="udk"
                     /locus_tag="OQP62_001136"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HCS1720738.1"
                     /translation="MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVI
                     PEDSYYKDQSHLSMEERVKTNYDHPNAMDHSLLFQHLQALKRGSAIELPVYSYVEHTR
                     MQETVRVEPKKVIILEGILLLTDARLREEMNFSIFVDTPLDICLMRRIKRDVNERGRS
                     MDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE"
     gene            5354..8344
                     /locus_tag="OQP62_001137"
     CDS             5354..8344
                     /locus_tag="OQP62_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MASE1 domain-containing protein"
                     /protein_id="HCS1720739.1"
                     /translation="MSKPSQHVFVTVPHPLLRLVSLGLVAFVFTLFSLVLSRVGTQLA
                     PLWFPTSIMMVAFYRHAGRLWPGIAVACSLGSIGASLTLFPAASLNFSWTAINIIEAA
                     TGAILLRKLLPSYNPLQNLNDWFRLAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWV
                     LSEAIGALTLVPLGLLFKPHYLLRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTC
                     VIVLLMWSAVRLPRMEAFLIFLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMI
                     LLPANMMTMVMYAFRTERKHITESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHF
                     LGYSQDELRTMTFQQLTWPEDLNNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALL
                     AVSLVRHKDNQPLYFIAQIEDINDLKQSEQENQRLMERITQANEALFQEKERLHITLD
                     SIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGNKGPLLEDIYR
                     ANRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVTESRKMLRQL
                     SYSATHDALTQLANRASFEKQLQQRLQTIQESPQHHALVFIDLDRFKAVNDSAGHAAG
                     DALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIATRLINAVNEYHFM
                     WEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHALTSS
                     KGMMPLEEQWHMIKNNLLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAFRA
                     GLADSALHHALDRRVFHEFFRHAATAVASKGLSVALPLSAAGLYSATLIDELLEQLEH
                     SPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGRDLQLFNLLPPHIV
                     DYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGVDL
                     IYGDTIAEAQPLDLLLNTSYFAIH"
     gene            complement(8312..9181)
                     /gene="alkA"
                     /locus_tag="OQP62_001138"
     CDS             complement(8312..9181)
                     /gene="alkA"
                     /locus_tag="OQP62_001138"
                     /EC_number="3.2.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase 2"
                     /protein_id="HCS1720740.1"
                     /translation="MFTLSWQPPYDWSWMLGFLAARAVDGVETVGEGFYARSLVVGEH
                     RGLVSVRPHLPTHTVQVSVSAGLLPVAPACLAKVSRLFDLDCQPEQVAAVLGPLGEDR
                     PGLRLPGSVDTFEQGVRAILGQLVSVAMAARLTAKVARRYGEALPDAPDYVCFPGPET
                     LALADPLALKALGMPLRRAEALIHLAQATLAGKLALSAPPDIEQSVKNLQTFPGIGRW
                     TANYFALRGWQAKDIFLPDDYLIKQRFAGMTAAQIRRYAERWKPWRSYALLHIWYTHG
                     WQPSMDSEIAGIQ"
     gene            9315..10667
                     /gene="yegD"
                     /locus_tag="OQP62_001139"
     CDS             9315..10667
                     /gene="yegD"
                     /locus_tag="OQP62_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HCS1720741.1"
                     /translation="MFIGFDYGTANCSVAIMRDGHPQLLTMENNSALLPSMLCAPTRE
                     AVSEWLYRHHDVPATDEETQALLRRAIRYNREEDIEVGAQSVQFGLASLAHYIDDPQE
                     VWFVKSPKSFLGASGLKPQQVALFEDLVCAMMVHILHTAHSQLPEAITQAVIGRPINF
                     QGLGGDDANRQAQGILERAAKRAGFQEVVFQYEPVAAGLDYEATLREEKRVLVVDIGG
                     GTTDCSMLLMGPQWRQRADRENSLLGHSGCRVGGNDLDIALAFKNLMPLLGMGGETEK
                     GIALPVLPWWNAVAINDVPAQSDFYSSANGRLLNDLVRNAREADKVALLLKVWRQRLS
                     YRLVRCAEESKIALSGQADVTARLPFISDDLAVAISQQGLEAALDQPLARILEQVQLA
                     LDSAQEKPDVIYLTGGSARSPLIKKALSEQLPGIPVAGGDDFGSVTAGLARWAEVVFR
                     "
     gene            complement(10766..10879)
                     /locus_tag="OQP62_001140"
     CDS             complement(10766..10879)
                     /locus_tag="OQP62_001140"
                     /inference="COORDINATES: protein motif:HMM:NF025322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS1720742.1"
                     /translation="MLKRESPSRGRGQNKERVMMKVVIIMVILLVISLPAY"
     gene            11108..12349
                     /gene="mdtA"
                     /locus_tag="OQP62_001141"
     CDS             11108..12349
                     /gene="mdtA"
                     /locus_tag="OQP62_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter subunit MdtA"
                     /protein_id="HCS1720743.1"
                     /translation="MKGSNTFRWAIAIGVVVAAAAFWFWHSRSESPTAAPGVAAQAQH
                     TAAAGRRGMRDGPLAPVQAATATTQAVPRYLSGLGTVTAANTVTVRSRVDGQLIALHF
                     QEGQQVNAGDLLAQIDPSQFKVALAQAQGQLAKDNATLANARRDLARYQQLAKTNLVS
                     RQELDAQQALVNETQGTIKADEANVASAQLQLDWSRITAPVSGRVGLKQVDVGNQISS
                     SDTAGIVVITQTHPIDLIFTLPESDIATVVQAQKAGKTLVVEAWDRTNSHKLSEGVLL
                     SLDNQIDPTTGTIKIKARFTNQDDTLFPNQFVNARMLVDTEQNAVVVPAAAVQMGNEG
                     HFVWVLNDENNVSKKRVKIGIQDNRNVVISAGLSAGDRVVTDGIDRLTEGAKVEVVEP
                     QTTMADEKSPSRHEGQKGARA"
     gene            12349..15471
                     /gene="mdtB"
                     /locus_tag="OQP62_001142"
     CDS             12349..15471
                     /gene="mdtB"
                     /locus_tag="OQP62_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MdtB"
                     /protein_id="HCS1720744.1"
                     /translation="MQVLPPGSTGGPSRLFILRPVATTLLMAAILLAGIIGYRFLPVA
                     ALPEVDYPTIQVVTLYPGASPDVMTSSVTAPLERQFGQMSGLKQMSSQSSGGASVVTL
                     QFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPIYSKVNPADPPIMTLAVTSNAMPM
                     TQVEDMVETRVAQKISQVSGVGLVTLAGGQRPAVRVKLNAQAIAALGLTSETVRTAIT
                     GANVNSAKGSLDGPERAVTLSANDQMQSADEYRKLIIAYQNGAPVRLGDVATVEQGAE
                     NSWLGAWANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTT
                     NIRASVRDTQFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFS
                     INNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFS
                     LIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSRQSLRKQN
                     RFSRACERMFDRVIASYGRGLAKVLNHPWLTLSVAFATLLLSVMLWITIPKGFFPVQD
                     NGIIQGTLQAPQSSSYASMAQRQRQVAERILQDPAVQSLTTFVGVDGANPTLNSARLQ
                     INLKPLDARDDRVQQVISRLQTAVATIPGVALYLQPTQDLTIDTQVSRTQYQFTLQAT
                     TLDALSHWVPKLQNALQSLPQLSEVSSDWQDRGLAAWVNVDRDSASRLGISMADVDNA
                     LYNAFGQRLISTIYTQANQYRVVLEHNTASTPGLAALETIRLTSRDGGTVPLSAIARI
                     EQRFAPLSINHLDQFPVTTFSFNVPEGYSLGDAVQAILDTEKTLALPADITTQFQGST
                     LAFQAALGSTVWLIVAAVVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALIIAGS
                     ELDIIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIFQACLLRFRPILMTT
                     LAALLGALPLMLSTGVGAELRRPLGIAMVGGLLVSQVLTLFTTPVIYLLFDRLSLYVK
                     SRFPRHKEEA"
     gene            15472..18552
                     /gene="mdtC"
                     /locus_tag="OQP62_001143"
     CDS             15472..18552
                     /gene="mdtC"
                     /locus_tag="OQP62_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MdtC"
                     /protein_id="HCS1720745.1"
                     /translation="MRFFALFIYRPVATILIAAAITLCGILGFRLLPVAPLPQVDFPV
                     IMVSASLPGASPETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDIN
                     GAARDVQAAINAAQSLLPGGMPSRPTYRKANPSDAPIMILTLTSESWSQGKLYDFAST
                     QLAQTIAQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQG
                     AIEDSVHRWQIQTNDELKTAAEYQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGMTN
                     AKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV
                     EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMAL
                     TIATGFVVDDAIVVLENIARHLEARMKPLQAALQGTREVGFTVISMSLSLVAVFLPLL
                     LMGGLPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLL
                     VALQQGYGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQA
                     DQSISFQAMRGKLQDFMKIIRDDPAVNNVTGFTGGSRVNSGMMFITLKPRGERKETAQ
                     QVIDRLRVKLAKEPGAKLFLMAVQDIRVGGRQANASYQYTLLSDSLPALREWEPKIRK
                     ALSALPQLADVNSDQQDNGAEMNLIYDRDTMSRLGIDVQAANSLLNNAFGQRQISTIY
                     QPMNQYKVVMEVDPRYSQDISALEKMFVINRDGKAIPLSYFAQWRPANAPLSVNHQGL
                     SAASTIAFNLPTGTSLSQATEAIDRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILI
                     VAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLI
                     GIVKKNAIMMVDFALEAQRSGGLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSG
                     GDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSRKNSKPVVEI"
     gene            18549..19961
                     /locus_tag="OQP62_001144"
     CDS             18549..19961
                     /locus_tag="OQP62_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1720746.1"
                     /translation="MTEFPDNTRWQLWIVAFGFFMQSLDTTIVNTALPSMAKSLGESP
                     LHMHMVVVSYVLTVAVMLPASGWLADKIGVRNIFFAAIVLFTLGSLFCALSGTLNQLV
                     LARVLQGVGGAMMVPVGRLTVMKIVPRAQYMAAMTFVALPGQIGPLLGPALGGVLVEY
                     ASWHWIFLINIPVGIVGAMATFMLMPNYTIETRRFDLPGFLLLAIGMAVLTLALDGSK
                     SMGISPWTLAGLAAGGAAAILLYLFHAKKNSGALFSLRLFRTPTFSLGLLGSFAGRIG
                     SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQIVNRFGYRRVLVATT
                     LGLALVSLLFMSVALLGWYYLLPLVLLLQGMVNSARFSSMNTLTLKDLPDTLASSGNS
                     LLSMIMQLSMSIGVTIAGMLLGMFGQQHIGIDSSATHHVFMYTWLCMAVIIALPAIIF
                     ARVPNDTQQNMVISRRKRSL"
     gene            19961..21364
                     /gene="baeS"
                     /locus_tag="OQP62_001145"
     CDS             19961..21364
                     /gene="baeS"
                     /locus_tag="OQP62_001145"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     BaeS"
                     /protein_id="HCS1720747.1"
                     /translation="MKVWRPGITGKLFLAIFATCIVLLISMHWAVRVSFERGFIDYIK
                     HGNEQRLQMLGDALGDQYQQHGNWRFLRNNDRFVFQILRSFEHDNDRDKPGPGMPPHG
                     WRTQFWVVDQNGRVLVGPRGPVPHDGTRRPILVNGVEVGAIIASPVERLTRNTDINFD
                     MQQRRASWMIVALSTLLAALATFLLARGLLAPVKRLVEGTHRLAAGDFTTRVTPTSAD
                     ELGKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGVRQFTPE
                     SVTSLQAEVGTLTKLVDDLHQLSLSDEGALAYQKTTVDLVPQLEVAGGAFRERFTSRG
                     LTLHYALPDSMTVFGDPDRLMQLFNNLLENSLRYTDSGGGLHISAEQRDKSLFLTFAD
                     SAPGVSDEQLQKLFDRFYRTEVSRNRASGGSGLGLAICVNIVHAHNGHLHAAHSPFGG
                     VSITVELPLDRDLQREV"
     gene            21361..22083
                     /gene="baeR"
                     /locus_tag="OQP62_001146"
     CDS             21361..22083
                     /gene="baeR"
                     /locus_tag="OQP62_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BaeR"
                     /protein_id="HCS1720748.1"
                     /translation="MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLINHGD
                     KVLPYVRQTPPDLILLDLMLPGIDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEI
                     GADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLMIDESRFQASWCGKALD
                     LTPAEFRLLKTLSLEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAE
                     QSFIRAVYGVGYRWEADACRLV"
     gene            22352..23538
                     /locus_tag="OQP62_001147"
                     /pseudo
     CDS             22352..23538
                     /locus_tag="OQP62_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000141078.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytoplasmic protein"
     gene            23548..24255
                     /locus_tag="OQP62_001148"
     CDS             23548..24255
                     /locus_tag="OQP62_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001786138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
                     /protein_id="HCS1720749.1"
                     /translation="MFLLLPPYFLAGATTKKNKPLIAARIAEEKEKDRLKDLRRDTRR
                     RQWALALADILARRNGLPIKGVELVFKLDDDKHRYLAQQVKKELGLSENLNGAALRHK
                     VEDILRRWPAGIGSSPSTFYHHLAAQGQVRDALAFDCMRTAFLTRCIAGLGWCDENEA
                     WLVLLLNAQRAQDCFDSWEDYATAYVRARRVWLTLRDTPIALAGRDLQEATHYLQDPV
                     SRWRQLPWNEFKIFEPI"
     gene            24266..26377
                     /locus_tag="OQP62_001149"
     CDS             24266..26377
                     /locus_tag="OQP62_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4034 domain-containing protein"
                     /protein_id="HCS1720750.1"
                     /translation="MEQDDRLLNAMFEMCNHKNPLNDGQREWHIADIPGLLREERYDE
                     LDERYNQALTESFTSREAEKRYFFAWNQMDNPFYDMDTLVEAGPQGLALIKNWQRARP
                     RSTHAWLAEAQYWNHRAWLYRSYGWARETTRAMWICAAACNERMVIAALNAIDCEPRQ
                     WMAAALTSTNSKVFGQPDWLVEFLEGADVAGQPLMEDLAEYHRHSPQEVDALMAHSGL
                     SFADAVCPNLPRPSVLPECNDDAGQKYWLAVCLAIFPTAFYVLDEYIPFRMPRWGGSH
                     EEIREFLESSVCDHLSAAEREHLELLIWWDDHRDLRIKEVDSPAEQERIIAKAEEISL
                     RAHIQESRHNTLKWLRVCYSDLDDNDALWRTLQRSIVEKVKFNNYFFDDTIKFALRDF
                     PDTWWMYNFLCQNAQQTEFAVPKIRRGYFQYAGLLGFEKDEAQGLAWLDSVADIQYNH
                     NWRAAIKNFDWFGLPEHFVPLAELGAQRNIPAALNLLGLEHNNKENNGLLPYDPAIAL
                     GYFQRAAEILHRRLALRESTPYKLIDNGGYTDYENDLQNIHFSIGICNQRLSKQELDT
                     EKRSAYEKELLDNLWLAHQFGHKEAWGLFLLNIFEVKDITLAHKHLELVQQEANKGTL
                     HAMVTLSRLHGNKHDRTLFNMKLSARWAHFAFTLYPDNEIVMDCLDHLHFDSFWKRFR
                     FAWYTVRIPNSELPGQVNSMV"
     gene            26382..27101
                     /locus_tag="OQP62_001150"
     CDS             26382..27101
                     /locus_tag="OQP62_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000586683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HCS1720751.1"
                     /translation="MIIQRKSLFLCALLLLFATARAEITEQQIEADCAKIPVLASQGE
                     QLYKTQKYAKALDAFEQLAAWSESCALDDNAIATAYNNVALTWIREGEWRKARAWLML
                     RPNDSKSIYNLKLIKDKLSVLPPPVSTAGEYWRYAGRASWNVLSVKALPTPSRYQVNF
                     QGYWFGLMGIYFGPNIGEFYAEITLENDKAIVALREGDDIHCDISLAFSSETIDASTD
                     TFVDCGFGANVRADGHYLRVE"
BASE COUNT         5991 a         7557 c         7387 g         6174 t
ORIGIN      
        1 gtttccgaca gaaacattac ggctatttta aagttatttt atagccccgt aacaaagata
       61 aattgctctg cggcattgca tttttccgcc gtattatcca tgatcgaatt gtgacaattg
      121 tcatattaca gaaggtattg ctcttactat ggaatggatt gccgatccgt caatctgggc
      181 cggactggta acgttaatcg ttatcgaact tgttctcggc attgataacc tggtctttat
      241 tgccatcctc gctgaaaaac taccgccggg gcagcgcgac cgcgcgcgca ttaccggcct
      301 gatactggcg atgatcatgc gcctgctgct gctggcgtca atctcgtggc tggtcacctt
      361 gactaagccg ctctttagcg tacaggcgtt aagctttagc gcccgcgatc tgattatgct
      421 gttcggcggc ttcttcctgc tctttaaagc caccatggag ctcaacgaac ggctggaagg
      481 gaaagatagc gccaacccta cccagcgtaa gggggcgaaa ttctgggcgg tggtcgcgca
      541 aatagtggtg ctggacgcta tcttttctct cgactccgtg attaccgccg tggggatggt
      601 cgatcaccta gcggtcatga tggcggccgt gataatcgcc attagcctga tgctgctcgc
      661 cagcaagtcc ctgacccgat ttgtgaacaa ccatcccacc attgtcattt tgtgccttag
      721 cttcctgcta atgatcggct ttagcctggt ggcggaaggg tttggtttcc acattccgaa
      781 agggtatctg tacgcggcta tcggcttctc ggtgatgatc gaggcgctca accaactggc
      841 tatttttaac cgccgccgtt ttctttccgc taaccatacg ctgcgccagc gcacaacgga
      901 ggccgtgatg cggctgatta gcggtaaaaa agaggatgcc gaactggatg cggaaaccgc
      961 cgcgatgctg gcagaccatg acgacagcca gatttttaat ccgcaggagc gcaggatgat
     1021 tgagcgggtg ctgaatctca accagcgcac cgtaagtagc atcatgacgt cgcgtcacga
     1081 tatcgagcat atcgatctca acgcgccgga agcggaaatc cgcgctctgc tggaaaagaa
     1141 ccagcatacg cgtctggtcg tgacgggtga aaatgaacag gaagatttac tcggcgtcgt
     1201 ccacgtcatc gatctgttgc aacaatcgct gcgcggcgaa ccgctcaacc tgcgggcgct
     1261 gattcgccaa ccgctggttt tcccggaaac attgccgctg ctgcctgcgc tggagcagtt
     1321 ccgtaacgcc agaacccatt ttgcctttgt cgtagatgag tttggctcgg ttgaaggcat
     1381 tgtgacatta agcgatgtca tggagactat cgccggtaat ctgccgaatg aagtcgagga
     1441 aattgacgcc cgccacgata ttcagaagaa cccggacagt tcctggacag caaacggcca
     1501 tatgccgctg gaggatttgg tgcagtacgt gccgctaccg ctggatgaaa aacgggaata
     1561 ccatacgatt gccggattat tgatggaata tttgcaacgc ataccgcaaa ccggtgaaga
     1621 ggttcaggtg ggcgattatt tgctgaaaac attgcaggta gaaagccatc gagtgcagaa
     1681 agtgcagtta attccgctgc ataacggcga gccagaccag gagatgtaac gtctgttcgc
     1741 ctgccccggc ctgcttacca ggcaggccgg aggcgcgtta gcctcgccat ccggctctgc
     1801 cctttggcca aaaactacag cttattcagc agcttcttca catctttacc gttgcgggta
     1861 tctttattgc gatccgccca gtcattgagc cgacgcttcg cctcatcctg taaatgctta
     1921 cgcaataact gctccacttg cagggtatag ttcagctcct gccacttgcc atagacgcgc
     1981 aacggcaccg gcgtctcttt caggaaggtg atcaggttgc tatcgccgtt ccagccgccc
     2041 agcacacgca gattaaattg tgtatcacag ctctgcttaa ccagatccag cgttccgctg
     2101 ccggttaacg ccagcataga agattgcccg accatgtcgt cgagcgtcag cgtgccctta
     2161 tttagcgtca gatcggtcgt gaagcgatcc agtcgggtcg cgttgtccat attttcctgc
     2221 gactgctgcg cgtcgccgcc gcttcgctct acggcctgct gcaccagttg ctggaaattc
     2281 attccttcaa ggcgcgtatt gctcatgtca acatgcgctt ttcctttcca actatggcga
     2341 aatgcctctg cgtcaatatc cgccccggag aaatcgccaa ccagcgacat cttaccggtc
     2401 aggctaatcg gataattgaa ggctttcagg atagtcccaa tctcaacatg gttgaggcga
     2461 gggtggaatt cgatgcgcgg actggcggtg cgggcgtcca gcgtgccggg cagcgacatc
     2521 tctccgtcgg ccagtttccc ctgcaactca gtaatatcca gcaatccggt ctgattagac
     2581 atcttcgtcg aaacctgggt aaagtccatt ccccgccagc gaactgaatc cgcctgtaaa
     2641 gcaatctccg ccgtaaagct ttgcagcccc tgataaggcg gcgcaccaac acgcgacgcg
     2701 ataactggcc tggtcagggg gagcgtattt tgcccctgcg acaccgcgcc gcctgtctga
     2761 gccacggcgc tatgatgcgg caacaggttg tccagattaa gcttgctgga ccggaggtca
     2821 atttgccatt ccggctgctc cgccagcgtt acctgaacat gcccggtcag agaactgtca
     2881 ttcgccgtta aatttaagtg gttaaatgaa agacgttttt gcgcctcctg ccactgcgcc
     2941 tgcaattgtc cctgcccctc aatcccctgc gccggtagat ccgcgccctg caattgccag
     3001 cgcagttgct caatacccgc ggttaaatta tgcggataat cggaagcatc caccgttccg
     3061 ctgaacgata aagcaagatc ccgctgatcg cggttcacgc gtcccgaaaa atcaaacgtg
     3121 ccgcgatgct cggcatcttg ttccatattc agacgaatat cgcgcaccgt gacctgatca
     3181 tcattttcat gctggaaaac cagcacgctg ccggcaacgc gcaggctacg aatatcaaac
     3241 gaccagccgc gatcttccgc tacgtccggc aaggtattat ctttcggcgc gaccggcgca
     3301 tcatcactgc gtaccgcttc cgtttgcggc gtcagttgaa tcaccccgcc tttcagcatc
     3361 acctgcttaa catgaagctg atgactcaac agcggccata aagcgacatc caggcgcata
     3421 ttgtcagccc gcaccagcgg ttcgctggcg cctcgcgccg ttagcgtcat tcgcccggaa
     3481 aggatactga gttgcggcca tacgtgccag cgcagcggcc cgtccagttg caactgatat
     3541 tcactacgcg cggcaacctg ctgcaccata taggcgcgga aatcattcgg attgaccaac
     3601 aataccaacg cagagaatcc ggccaccagc acgaccaaga gaatcatcag cgtcgtcaga
     3661 aatcgtctca tgctaccctc aatggaccgg cagtattgcg ccgaatggct cagtctttat
     3721 caatccggct ggcaacagcg ccctgctgat cgcgatattt ggcatcctga cggcggttat
     3781 aaggccgcgc cgccgggccg gacagcggct caaagctcag cgcgccgatg agcatacccg
     3841 gacgcaacgc cagcggcagc ttcccggagt tgtaaaactc aagcacaatg cagcccgacc
     3901 agccgggatc gatacggtgc gccgtcacat gcaccatcag tcccagacgc gccagcgagg
     3961 aacgaccatc cagccagccc actaaatccg gtggcagggt aacggattca aaggtgacgg
     4021 ccagcgccaa ttcgcctgga tgcagataaa atgcctcgcc gtccggcaaa acgatttcat
     4081 cgctcatcac gcgatccaac gccgcgctga cctcatcttt cggcccgctc agatcgataa
     4141 acgccgccgt atggccacgg aaggttcgaa atttattgcc aagacgtaca tcgaccgtcg
     4201 cgccgttaat gcgctctacg ggaggtcgcg gggtgataga caaacggcct tcatccagcc
     4261 aggcttcaat atctcggtcg cataaacgca tggcactttc tcctttcgcg catcaagccc
     4321 ttaaatcaag cacatcaagg gctaaccagg ttatcactga acggtacaca attcgccaga
     4381 tttattcaaa gaactggctg attttcgctt tcagaatatc aatagcgatg cggtttttac
     4441 cgccgcgcgg cacgataata tccgcatatt gtttggaagg ctcaataaat tgcaggaaca
     4501 tcggacgcac cgttttctga tattgcgcca tcaccgaatc cattgagcga ccacgctcgt
     4561 tcacatcgcg tttgatacgg cgcatcaaac agatatccag cggcgtatcg acaaaaatag
     4621 agaagttcat ctcttcacgc aaacgcgcgt cggtcagtaa cagaatacct tcaagaataa
     4681 tcactttctt cggttctacg cgaaccgttt cctgcatacg ggtatgctca acataactgt
     4741 ataccggtaa ttcaatcgcc gaaccgcgct tgagcgcctg aagatgctga aatagcaggc
     4801 tgtgatccat cgcattcgga tggtcatagt tagtttttac gcgttcttcc atcgacagat
     4861 ggctttgatc tttgtaataa ctgtcttcgg gaataacgcc aatatgttcg tcacccactt
     4921 gttcacgcaa ttcgcggtaa agggtactgg caataagact cttgccggaa gccgatgcgc
     4981 cagcgatacc gataatgacg cactgatgag actgatcagt cataaattta gcgacctgat
     5041 taacctggat gtaaagaagg ggggcgccga aacgccaaac gcggcaatta tagggatttc
     5101 agcagcacga taccagtccg gcgctatgcc acggtgaatt tgttggcggc gcattcgacg
     5161 tcgcgacgta aaagcgttca gttttaatgc ggacagcgga tttatcgacc cgtctggagg
     5221 aggaatacgc cgggagccac aatttatatt cagtcagcgt ataaatcatt acgcgtttat
     5281 actagcataa tcacagagta aactgacgcg tccggtattc cgcgacgtta ccggcgattc
     5341 ggatagagtg gtaatgagta aaccatccca acatgttttc gttaccgtcc cccacccgct
     5401 attgcgtctg gtcagtttag gcctggtcgc gtttgtcttt acgctctttt cgctcgtatt
     5461 atcgcgtgtc ggcacccaac tcgcgccgct gtggttcccc acctccatta tgatggtcgc
     5521 gttttaccgc catgcgggcc gtctgtggcc tgggatcgcg gtcgcctgct cgctcggcag
     5581 catcggcgcc tcactgactt tatttcctgc cgcctcgctt aactttagct ggacggcaat
     5641 aaatattatc gaggcggcca ctggcgcgat actgctacga aaactgctcc ccagctacaa
     5701 ccccttacaa aatttgaatg actggtttcg tctggctatc ggcagcgccg tgattccgcc
     5761 gctactcggc ggcctgttat tttggctgat agcgccggaa gcggtcgcct cgaaagcgtt
     5821 tctgatttgg gtattatcgg aagccatcgg cgcgctgacg ctggtgccgt taggtttact
     5881 gtttaaacca cactatctgt tgcgtcatcg cgacccgcat ctgttgctgg aaacgctatt
     5941 gacgctggtc attacgctgg cgctaagctg gctcgctatg cgctatattc cgtggccgtt
     6001 tacgtgcgtt atcgtcctgt tgatgtggag tgcggtgcgc ctgccgcgaa tggaggcgtt
     6061 tttaattttt ttagctaccg ttatcgtggt ctcgctcatg ctggccaatg accccacgct
     6121 gctcgccacg ccgaaaaccg acgtgatggt caatatgccg tggctgcctt ttttaatgat
     6181 cctgctgcct gccaatatga tgacgatggt gatgtacgcg tttcgcacgg agcgcaaaca
     6241 tatcaccgag agcgaatccc gctttcgcaa cgcgatggag tattccgcca ttggtatggc
     6301 gctggtcggt acggagggtc agtggctaca ggtcaataaa tctctgagcc attttcttgg
     6361 ctatagccag gatgaattac gcacgatgac atttcagcaa ttgacctggc cggaagacct
     6421 gaataacgac cttgaacagc taaacatgct ggtgcgcggc gacatcaaca gctattccat
     6481 ggaaaaacgc tactacaccc gcaacggcga tgtcgtctgg gcgctgctgg ccgtctcgct
     6541 ggttcgtcat aaagacaatc aacctctcta ttttattgct cagattgaag atattaacga
     6601 tctcaagcaa agcgagcagg aaaaccagcg gttgatggag cgtattacac aggcgaacga
     6661 ggcgctgttt caggaaaaag aacggttgca catcacgctt gactctatcg gagaagcggt
     6721 ggtgtgtatt gatgtcgcga tgaatatcac ctttatgaat ccgatcgccg agaagatgag
     6781 cggctggcgg caagaggatg ctttaggcgc gccattatta acggttctgc gcattacgtc
     6841 aggtaataag gggccgctgc tggaggatat ttatcgcgcc aacaggtcgc gatcggacat
     6901 ggaacaggag atagtgctcc attgtcataa cggcggtagc tacgatattc attacagtat
     6961 cacgccgctc agtacgcttg acggcgataa gattggttcg gttctggtta tccaggacgt
     7021 taccgaatca cgaaaaatgt tacgccagct cagctacagc gcaacgcatg acgccctcac
     7081 ccaacttgcc aaccgcgcca gttttgaaaa acagctgcaa cagcgcctgc aaacaataca
     7141 ggaatcgcct caacatcatg cgctggtgtt tatcgatctg gaccgtttta aagcggttaa
     7201 cgacagcgcg ggacatgccg ccggcgatgc cttattgcgc gagctcgcgt cactgatgct
     7261 cagtatgctt cgctccggcg atctcctggc ccgcctgggt ggcgatgagt ttggcctgtt
     7321 gctaccggat tgtaatagtg acagcgcgcg ctttatcgcg acgcggctta tcaacgccgt
     7381 taatgaatat cactttatgt gggaaggacg cctgcatcgg atcggcgcca gcgccgggat
     7441 cacaatgata aatgaacata actgccagct cacagaggtc gtgtctcagg ccgatattgc
     7501 ctgctacgcc gcgaaaaata gcggtcgagg ccgtctgacc gtgtacgaac cgcagcacgc
     7561 attaacctcc tcaaagggaa tgatgccgct ggaagaacag tggcatatga ttaaaaataa
     7621 cctcctgcta atgcttgcca gaaacgtcgc gccgccgcgt acgccggagg ccaccagctt
     7681 ttggctggtc tcactcaggc tgtggaccag cgaaggggaa gtgatggaag agcgcgcgtt
     7741 ccgggcaggg ttagccgact ccgcgctgca tcacgcgctt gaccgacggg tattccatga
     7801 gtttttccgc catgcggcga ccgccgtcgc cagcaaggga ttaagcgttg cgctgccgct
     7861 gtccgccgcg ggattataca gcgcgaccct tattgatgag ctgctggaac aactggagca
     7921 tagcccactg ccgccacggt tattacacct gattatcccg gctgacgtta tcgttaagca
     7981 ggcgcagacc gccgctgcga ctctgcgaaa actgcggcaa cgcggctgcc aggtgattct
     8041 cagccatgtc gggcgcgatt tacagctgtt taatttactg cccccgcata tcgtcgatta
     8101 tttactgctg gatagcgacc ttatcgccaa cgttcatgaa agtttaatgg atgaaatgct
     8161 gacctcgatc atccagggac acgcccagca tctggacatc aaaacgctcg ccgggccggt
     8221 acaaaaccca caggtgctgg atacgctctc ccgtattggc gtggatctga tttatggcga
     8281 cactatcgcc gaagcgcaac cgctggattt gttactgaat accagctatt tcgctatcca
     8341 ttgacggttg ccagccgtgg gtataccaga tatgcagtag cgcgtaggaa cgccacggtt
     8401 tccagcgctc cgcgtagcga cggatctgcg cggccgtcat cccggcgaag cgctgcttaa
     8461 ttaagtaatc atcgggcaaa aagatatctt ttgcctgcca accgcgcagg gcgaaatagt
     8521 tcgccgtcca gcggccaatt cccggaaatg tttgtaaatt tttaacgctc tgctcaatat
     8581 ccggcggcgc ggagagcgcc agttttcccg ccagcgtcgc ctgcgccaga tgaatcagcg
     8641 cttcggcgcg ccgcagcggc atccccagag ctttaagcgc cagcggatcg gccaacgcca
     8701 gcgtttccgg accgggaaaa cagacataat cgggcgcatc cggcaacgcc tcgccatagc
     8761 ggcgcgccac tttcgccgtc aaccttgccg ccatcgcgac actcaccagt tgccccagta
     8821 tcgcccgcac gccctgttca aacgtatcaa ccgatcccgg taaacgcagc cccggtctgt
     8881 cctcgcccag tggccccagc acggcggcaa cctgctcggg ctggcagtca agatcaaaca
     8941 gacgcgaaac tttcgccaga cacgccggcg cgacgggaag taatccggcg ctcacgctaa
     9001 cctgcacagt gtgggtgggc agatggggcc tcacgctgac cagtccgcga tgctcgccca
     9061 ccaccaggct gcgcgcataa aagccctcgc ctactgtttc cacgccgtcc accgcacgcg
     9121 cggcaagaaa gcccaacatc cacgaccagt cgtaaggcgg ctgccagctc agggtaaaca
     9181 tacttttctc ctttatttga cctttcagca taaacgctaa tcgcacgtaa cgccttgctt
     9241 tcatattcca gttgtcgccg cgacgacatt tcgctaaagt cacgcccctt cttcactggc
     9301 atggggattt taaggtgttt ataggatttg attacggtac ggcaaactgc tcggtcgcca
     9361 ttatgcgcga cgggcatcca cagttgctga caatggagaa taacagcgca ttactgccgt
     9421 ctatgctgtg tgcgccgacg cgcgaagcgg tgagcgagtg gctgtatcgc catcatgatg
     9481 tgccggcaac ggacgaagaa acccaggcgc tgctacgccg cgctatacgc tacaaccgcg
     9541 aggaagatat tgaggttggc gcgcaaagcg tacagtttgg tctggcgtcg ctggcgcact
     9601 atattgacga tccccaggaa gtctggttcg tcaaatcgcc gaaatccttt ttaggcgcca
     9661 gcggcctgaa accgcagcag gtcgcgctgt ttgaagattt ggtctgcgcc atgatggtac
     9721 atattcttca tacggcgcac agccaattgc cggaggccat tactcaggcg gtgatcggtc
     9781 gcccgatcaa ctttcaggga ctcggcggcg atgacgcgaa ccgccaggcg cagggtattc
     9841 tggagcgggc agcaaaacgc gccggttttc aggaggtggt attccagtat gaaccggtcg
     9901 cagcgggcct ggactacgag gctacgctgc gggaagagaa gcgtgtgctg gtcgtggata
     9961 ttggcggcgg taccaccgac tgttccatgc tgctgatggg gccgcagtgg cgtcagcgcg
    10021 ccgatcgtga aaacagcctg ttggggcaca gcggttgccg cgtgggcgga aacgatctgg
    10081 atatcgcgct ggcctttaaa aatctgatgc ctttgctggg catgggcggc gaaaccgaaa
    10141 aaggtatcgc cctgccggtg ctgccgtggt ggaacgccgt cgcgattaac gacgtcccgg
    10201 cgcaaagcga tttttacagt agcgcgaatg gtcgtctgtt gaacgatttg gttcgcaacg
    10261 cgcgtgaagc agacaaggtc gcgttgctgc tcaaggtctg gcgtcagcgg cttagctacc
    10321 gcctggtacg ctgcgcggaa gagagcaaaa tcgccctttc cggccaggcg gatgttacgg
    10381 cgaggctgcc atttatcagc gacgacctgg cggtcgctat cagccagcaa ggactggaag
    10441 cggcgctgga tcaaccgctg gcgcgtattc tggaacaggt gcaactggcg ctggacagcg
    10501 cgcaggaaaa accggatgtc atctatctga ccggcggcag cgcccgttcg ccattgatta
    10561 aaaaagcgct ttccgaacag ctaccgggca tacccgtcgc tggcggcgat gatttcggct
    10621 ccgtcaccgc aggactggcg cgctgggcgg aggtcgtttt ccgctaagcg cctcgcaagc
    10681 ccagcgctga tggattgaca ttattcttga tgtggcttaa cgtcaggagt gagggtaagg
    10741 gaggattcct cctccccctg gtgtcttagt aagctggtag gctaatcact aagagtatca
    10801 ccattatgat gactaccttc atcataaccc tttccttatt ttggcccctt cctcgggagg
    10861 ggctttcccg tttcagcatc ctgctgaaat cggtggctta tcttcattgc cgtgccggca
    10921 ctttaccgca ctccggcgcg ttaacgattt tcaccgatga gagttgcgta gcgcctcgca
    10981 aagcgggtcg ccattcagaa taatcccgac cgtgttccat aattcctcca tttttctccc
    11041 ttccctgctg actacaatag aggaagcaac attccgcaaa acgtttcagg atgagaaact
    11101 tataccgatg aaaggcagta atactttccg ctgggcaata gcgattgggg ttgtagtggc
    11161 cgccgccgca ttctggttct ggcatagccg tagcgaaagc ccgaccgccg cgccgggcgt
    11221 cgccgcgcaa gcgcagcata ccgccgccgc aggtcgccgc ggtatgcgcg acggccctct
    11281 ggcgccggta caggccgcga ccgcgaccac acaggctgta ccgcgctatc tgagcgggct
    11341 gggtaccgtg accgcagcga ataccgttac ggtgcgtagc cgcgtggatg gtcaactcat
    11401 cgccctgcac tttcaggaag gtcagcaggt taacgcaggc gatctgctgg cgcaaatcga
    11461 tcccagccag tttaaggtcg ccctggcgca ggctcaggga cagttagcga aagataacgc
    11521 tacgttggcg aatgcgcgtc gtgatctggc gcgctatcag caactggcca aaaccaatct
    11581 ggtttcccgt caggaactgg atgcgcaaca ggcgctggtc aacgaaaccc agggaaccat
    11641 taaagcggat gaagccaatg tcgccagcgc gcagctacag ctcgactgga gtcgtatcac
    11701 agccccggtc tcgggacgcg tgggtctgaa acaggtggat gtcggcaacc agatttccag
    11761 cagcgatacc gcaggtattg tcgtcattac gcaaacgcac ccgattgatc tcatttttac
    11821 tctgccggaa agcgatatcg cgaccgtggt tcaggcacag aaagcgggga aaacgctggt
    11881 cgtagaagcc tgggatcgaa ctaactcgca caaattgagc gaaggcgtgt tgctcagtct
    11941 ggacaaccag attgatccca cgacgggaac gatcaaaatt aaagcgcgct ttaccaatca
    12001 ggacgatacg ctgttcccca atcaatttgt gaacgcccgg atgctggtcg ataccgaaca
    12061 aaatgccgtt gtggtgcctg ccgcggcggt gcaaatgggc aatgagggcc actttgtgtg
    12121 ggtgctgaac gacgaaaata acgtcagcaa gaagcgggta aaaatcggta ttcaggataa
    12181 ccgaaacgtg gtgatcagcg caggattgtc ggcaggcgat cgcgtcgtta ccgatggtat
    12241 tgatcggctg acggaaggcg caaaagtcga ggtcgttgag ccgcaaacca ccatggcgga
    12301 tgaaaaatcc ccttcccgcc atgaaggtca aaaaggagcg cgcgcctgat gcaggtatta
    12361 cctccgggca gcacgggcgg cccttcgcgt ctgtttattc tgcgccccgt ggccaccact
    12421 ctgctgatgg cggcgatttt actcgccggg attatcggct atcgcttcct gcccgtcgcc
    12481 gctttgccgg aggtcgacta ccccactatt caggtggtta cgctctaccc tggcgccagc
    12541 ccggatgtca tgacctcctc cgtcaccgcg ccgcttgagc gccagttcgg ccagatgtca
    12601 ggacttaagc agatgtcgtc gcaaagctcc ggcggcgcat cggtggtgac gctacagttt
    12661 cagttgacgc tgccgctgga cgttgccgag caggaagtac aggcggcgat taacgcagcc
    12721 accaatttat tgccttccga cctgccgaat ccgccgattt atagcaaagt caatccggcg
    12781 gacccgccga ttatgacgct tgccgtcacc tcaaacgcga tgccgatgac ccaggtagag
    12841 gacatggtag aaacccgcgt ggcgcagaag atctcacagg tctccggcgt cgggctggtg
    12901 acgcttgccg gcgggcagcg ccctgcggta cgcgtaaaac tgaatgctca ggctatcgcc
    12961 gcgctcggtc tgaccagcga aacagtccgt accgcaatta ccggcgccaa cgtcaactcg
    13021 gcgaaaggca gtctggatgg ccccgaacgg gcggtgacgc tttctgctaa cgatcagatg
    13081 cagtctgccg acgaataccg caagcttatc atcgcgtatc aaaacggcgc gccggtacgg
    13141 ctgggcgatg tcgccaccgt cgaacagggg gcggaaaata gctggctcgg cgcatgggcg
    13201 aatcaagctc cggctatcgt gatgaacgtt caacgccagc ccggcgccaa tatcattgcg
    13261 acagcggaca gcattcgcca gatgctgccc cagcttaccg aaagcctgcc gaaatcggtg
    13321 aaggtcacgg tcctgtccga tcgcaccacc aatattcgcg cttccgtgcg cgatacccag
    13381 tttgaactga tgctggcgat cgcgctggtc gtcatgatta tctatctgtt tttacgtaat
    13441 attcccgcca caattattcc cggcgtcgcc gtaccgctgt cgcttatcgg cacctttgca
    13501 gtgatggtgt ttttggattt ttccattaat aacctgacgc tgatggcgct cactatcgcc
    13561 acgggtttcg tggtggacga tgcgattgtg gtgatcgaga acatctcgcg ctacatcgaa
    13621 aaaggagaaa aaccgctggc ggcggcgctc aaaggcgcgg gcgaaatcgg ctttaccatt
    13681 atttccctca ccttttccct gattgcggta ctgatcccgt tgctctttat gggcgatatt
    13741 gttggtcgac tgttccgcga atttgcggtg acgttggcgg tagcgatttt aatctccgcc
    13801 gtcgtctctt tgacgcttac gcccatgatg tgcgcgcgta tgctcagccg gcagtctctg
    13861 cgtaaacaaa accgcttttc ccgcgcctgc gagcggatgt ttgaccgcgt gatcgccagc
    13921 tacggacgcg gattagcgaa agtgctcaac catccatggc ttacattgag cgtggcattc
    13981 gccacgctcc tgctcagcgt tatgctgtgg ataaccatcc cgaaagggtt ctttccggta
    14041 caggataacg gcattatcca ggggacgctg caggcgccac aatcatcatc gtatgccagt
    14101 atggcgcaac gtcagcgcca ggtggcggag cggatattac aggacccggc ggtgcaaagc
    14161 ctgacgactt ttgttggcgt agacggcgct aatcccacgc tgaatagcgc gcgcctgcaa
    14221 attaacctca agccgctgga tgcgcgtgat gaccgcgtgc agcaggtgat ctcccggctg
    14281 caaaccgccg tggcgacgat tcccggcgtg gcgctgtatc tccagccgac gcaggattta
    14341 accatcgaca cgcaggtcag ccgcacgcag tatcagttta ccctgcaggc cacgacgctc
    14401 gatgcgctca gccactgggt gccaaaactg cagaacgcgc tacagtcgtt accacagctc
    14461 tctgaggtaa gcagcgactg gcaagatcgg ggattagcgg cctgggtgaa tgtcgaccgc
    14521 gacagcgcca gccgtctggg tatcagcatg gcggatgtgg ataacgcgct ctacaacgcg
    14581 ttcggacaac gcctgatttc aacgatttat acccaggcga accagtaccg cgtcgtgctg
    14641 gaacataata ccgccagcac gccgggtctg gcggcgctgg agacgattcg cctgacgagc
    14701 cgcgacggcg gcaccgtacc gctcagcgcg attgcccgca ttgagcagcg cttcgccccg
    14761 ctctccatca atcatttaga tcagttcccg gttacgacat tttcgtttaa cgtgccggag
    14821 ggctattcgc tcggcgatgc ggtgcaggcg attctcgata cggaaaaaac gctcgccctg
    14881 ccagcggata ttacaacgca gtttcagggc agtacgctcg ccttccaggc ggcgctgggc
    14941 agcaccgtct ggcttattgt cgccgccgtg gtggcgatgt atatcgtgct tggcgtgctg
    15001 tatgagagtt ttatccatcc gattacgatt ctctcaacgc tgcctacggc gggcgtcggc
    15061 gcgctgctgg cgctgatcat cgctggtagc gagctcgata ttatcgccat tatcggcatt
    15121 attttactga tcggtatcgt gaagaaaaac gccatcatga tgattgactt cgccctcgcc
    15181 gccgaacgcg aacaggggat gagtccgcgc gacgctatct tccaggcctg tctgctgcgt
    15241 tttcgaccga ttctgatgac cacgctggcg gcgttgctcg gggcattgcc attaatgttg
    15301 agtaccggcg ttggcgcgga attacgtcgc ccgttgggga tcgcgatggt gggcggctta
    15361 ctggtcagcc aggtattaac tctgtttacc actccggtga tttatctcct gtttgaccgc
    15421 ctgtcgctgt acgtgaaaag tcgctttccg cgccataaag aggaggcgta gatgcgcttt
    15481 ttcgcccttt tcatctaccg cccggtcgcc accattttga ttgccgccgc cattacgctg
    15541 tgcggcattc tgggctttcg tctgctgccg gtcgccccgc tgccgcaggt cgatttccca
    15601 gtgattatgg ttagcgcctc gctgccgggc gcctcgccgg aaaccatggc ttcgtcggtg
    15661 gcgacgccgt tggaacgttc tttgggacgc attgcaggcg tcaatgaaat gacttccagc
    15721 agctcgctcg gcagtacgcg cattattctc gaatttaatt tcgatcgcga tattaacggc
    15781 gcggcgcgcg acgtgcaggc cgccattaac gccgcgcaaa gcttgttgcc aggcggaatg
    15841 cccagccgcc cgacttatcg caaggccaac ccgtccgacg cgccgattat gattttaacg
    15901 ctcacctcag agagctggtc acagggcaaa ctgtatgatt tcgcctctac ccaactggcg
    15961 caaaccatcg cgcaaattga cggcgttggc gacgttgacg tcggcggcag ctccctgccc
    16021 gcagtacgtg taggcttaaa cccgcaggcg ctctttaacc agggcgtctc gctggatgag
    16081 gtccgcgaag cgatcgacag cgccaacgta cgccgaccgc aaggcgcaat tgaagatagc
    16141 gtccaccgct ggcaaatcca gaccaacgac gaactgaaaa ccgccgccga atatcagccg
    16201 ctgattattc actataacaa cggcgcggcg gtacgcctgg gtgacgtcgc cagcgtcacc
    16261 gactcggtgc aggatgtccg taacgccggg atgacgaacg ctaaacccgc tattttgttg
    16321 atgatccgca agctgccgga ggccaacatt attcagacgg tcgacggcat ccgggcaaaa
    16381 ctgccggaac tgcgggcaat gatccccgcc gctatcgatt tacaaatcgc ccaggatcgt
    16441 tcgccgacga ttcgcgcatc gctgcaagag gtagaagaga cgctggctat ctctgtcgcg
    16501 ctggtgatcc tggtggtgtt tttattcctg cgttccgggc gcgccacgct aatccccgcc
    16561 gtcgccgttc ccgtttcgct catcggcacc ttcgccgcca tgtatctgtg cggcttcagc
    16621 ctcaacaatc tgtcgctgat ggcgctgact atcgcgaccg gatttgtcgt tgatgatgcc
    16681 attgtggtgc tggaaaatat cgcccgccat ctggaggcga gaatgaaacc tttgcaggcg
    16741 gcattacagg gtacgcggga agtcgggttt acggtcatct ccatgagtct gtcgctggtg
    16801 gcggtatttc tgccgctgct gttaatgggc ggcctgccag gacgattatt acgggaattc
    16861 gccgttaccc tctcggtggc gattggcatt tcgctggtgg tctcgctcac actgacgccg
    16921 atgatgtgcg gctggatgct taaatcaagc aaaccgcgca cccaaccgcg taaacggggc
    16981 gttggccgtt tgctggtcgc cttgcaacag ggttacggca cgtcgttaaa atgggtgctt
    17041 aaccatacgc gtcttgtcgg tgtggttttt cttggcaccg ttgcgctgaa catctggctt
    17101 tatatcgcca tccctaaaac attctttccg gagcaggaca ccggcgtgtt gatgggcggt
    17161 attcaggctg accagagcat ctctttccaa gccatgcgcg gcaagctgca ggattttatg
    17221 aaaattattc gcgacgatcc ggcggtgaat aatgtcactg gttttaccgg cggatcgagg
    17281 gtgaatagcg gcatgatgtt tattacgctg aagccgcgcg gcgaacgcaa agagacggcg
    17341 cagcaagtca ttgaccgact gcgggtcaaa ctggcaaaag aacccggcgc caagctgttt
    17401 ctgatggcgg tacaggatat tcgcgtcggc gggcggcagg ctaacgccag ttaccaatat
    17461 acgttgctgt ctgactccct gccggcgctg cgcgagtggg agccgaaaat acgcaaagcg
    17521 ctctcggccc tgccgcaact ggcggacgta aactccgacc agcaggataa cggcgcggag
    17581 atgaacctta tctacgaccg cgacaccatg tcacggctgg gcattgatgt tcaggccgca
    17641 aacagcctgt taaataacgc tttcggccag cggcaaattt ccaccattta tcagccgatg
    17701 aaccagtata aagtggtgat ggaagtcgat ccgcgctata gccaggatat cagcgcgctg
    17761 gagaaaatgt tcgttatcaa ccgcgacgga aaagcgattc ctctctctta tttcgcccaa
    17821 tggcggcccg ccaatgcgcc gctgtcggta aaccatcagg gactttccgc agcgtccacg
    17881 attgccttta acttgccgac cggcacatcg ttatcgcagg cgacggaggc cattgatcgc
    17941 accatgacgc agcttggcgt cccctcgacg gtacgcggca gtttttccgg aacggcgcaa
    18001 gtcttccagc agaccatgaa ttcacagctt attttgatag tggcggcgat cgctaccgtc
    18061 tacattgtgc tggggatact gtacgaaagc tacgtccatc cgctgaccat tctctctact
    18121 ctgccatcgg cgggcgttgg ggcgcttctg gcgctggaac tcttcaatgc ccctttcagc
    18181 ctaatcgccc tgatagggat catgctatta attggcattg tgaagaaaaa cgccattatg
    18241 atggtcgatt ttgcgcttga agcgcaacga agcggcggcc tgacaccgga acaagccatt
    18301 ttccaggcct gcttgttacg cttccgtcca ataatgatga ccacgctggc ggcgctgttc
    18361 ggcgcactgc cattggtgtt atctggcgga gacggttcgg aattacggca gccgctgggg
    18421 ataaccattg tcggcggttt ggtcatgagc cagctcctga cgctctatac cacgccggtg
    18481 gtgtacctct ttttcgaccg tctgcggctg cgtttttcgc gtaaaaatag caaaccggta
    18541 gtagagatat gacagaattt cctgacaaca cccgctggca actctggatt gtggcattcg
    18601 gcttttttat gcagtcgctg gataccacca tcgtcaacac tgcgctgcct tccatggcga
    18661 aaagcctggg ggaaagcccg ctgcatatgc acatggtagt ggtgtcatat gttctcaccg
    18721 tcgccgtgat gctccccgcc agcggctggc tggcagacaa aatcggcgtg cgtaatattt
    18781 tctttgccgc catcgtgctg ttcacgctgg gttcgctgtt ttgcgccctc tccggtacgc
    18841 ttaatcaact ggtattagcg cgagttttac aaggcgtagg cggcgcgatg atggtgccgg
    18901 tcggacgcct gacggtcatg aaaatcgtgc cgcgtgcgca atatatggcg gcgatgacct
    18961 tcgtcgccct accgggacag atcgggccgt tactcggccc cgcgctgggc ggggtgctgg
    19021 tggaatatgc ttcatggcac tggatctttc tgatcaatat cccggtggga attgtcggcg
    19081 ctatggcgac ctttatgctg atgccaaact acaccataga gacccggcgc tttgatctgc
    19141 cggggttcct gctgttagct atcggcatgg cggtactcac gctggcgctg gacggtagta
    19201 aaagcatggg gatttcgccc tggacattag ccggacttgc tgcgggtggc gcggcagcca
    19261 ttctgctcta tctcttccat gccaaaaaaa actcaggtgc gttattcagc ctgcgattgt
    19321 tccgcacgcc cacgttttca ctggggttgc tgggcagttt tgccgggcgt atcggcagcg
    19381 gtatgctgcc gtttatgacg ccggtctttt tacaaattgg tcttggtttt tcaccgtttc
    19441 atgccggttt gatgatgatc cccatggtgc tgggcagcat gggaatgaag cggattgtgg
    19501 tgcagatagt taaccgtttt ggctatcgtc gggttctggt agcgaccacg ctcggactgg
    19561 cattggttag cctgttgttt atgtcggtcg cgctgctcgg ctggtattat ctcctgccgc
    19621 tggtactgct tttgcaggga atggtgaact cggcgcgctt ttcttccatg aataccttaa
    19681 cgctaaaaga ccttcccgat acgctggcca gcagcggcaa tagcttatta tcgatgatta
    19741 tgcagctctc gatgagtatt ggcgtcacta ttgccggaat gctgctgggt atgtttggcc
    19801 aacagcatat cgggatagac agtagcgcca cacatcacgt ctttatgtac acctggttat
    19861 gtatggcggt tattatcgcg ctaccggcga taatttttgc ccgcgtgccg aacgatacac
    19921 agcaaaacat ggtcatttca cggcgtaaaa ggagcctgta atgaaagtct ggcggcccgg
    19981 aatcaccggc aagctgtttc tggcgatttt cgccacctgc atcgtgctgc tgatcagtat
    20041 gcattgggcc gtgcgcgtca gttttgaacg cggatttatt gactatatca aacacggcaa
    20101 cgagcagcgg ctacaaatgc tgggcgatgc gctgggcgac cagtaccagc aacacggcaa
    20161 ctggcgtttt ttacgtaaca atgatcgctt cgttttccag attctgcgtt catttgagca
    20221 tgacaacgac cgggataaac ccggccccgg tatgccgccg cacggttggc gcacccagtt
    20281 ctgggtcgtc gatcaaaatg gccgggtgct ggtcggccca cgcggtccgg tgccgcatga
    20341 cggtactcgc cgccccattc tggttaatgg cgtcgaagta ggcgcgatta tcgcctctcc
    20401 tgtcgagcgg ctgacgcgca atacggatat taattttgat atgcagcagc ggcgtgccag
    20461 ttggatgatc gtggcgttat caaccttgct ggccgcgctg gcgacgtttt tgctggcgcg
    20521 tggcctgctc gccccggtca aacggttggt cgagggtacg cacaggctgg cggcggggga
    20581 ttttaccacg cgcgtgaccc caaccagcgc cgatgagctg ggaaaactgg cgcaagactt
    20641 taaccagctt gccagcacgc tggaaaaaaa tcagcagatg cgccgcgact ttatggcgga
    20701 tatttcccac gaactgcgca cgccgctggc ggtattgcgc ggcgaactgg aagccattca
    20761 ggatggcgtt cgccagttca cgccagaatc ggttacctcg ctacaggcgg aagtcggtac
    20821 gcttaccaaa ctggttgacg acctgcatca gctgtcgttg tctgacgagg gcgcgctggc
    20881 ttaccaaaaa acgaccgtcg atcttgttcc ccagttggaa gtcgctggcg gcgcgtttag
    20941 agaacgcttt accagccggg ggctaacgct acattacgcg ttgccggata gtatgaccgt
    21001 cttcggcgac ccggatcgcc tgatgcaact gtttaataat ctactggaaa acagtctgcg
    21061 ctacaccgac agcggcggcg gcctgcatat ttccgccgaa caacgcgaca aatcattatt
    21121 cctgaccttt gccgattctg caccgggcgt cagcgatgag cagttacaaa agctttttga
    21181 ccgtttttac cgcacggaag tgtcccgtaa ccgcgccagc ggcggttctg gactggggct
    21241 ggcgatatgc gtcaatattg tacacgcgca taacggtcat cttcacgccg ctcattcgcc
    21301 ttttggcggg gttagcatta cagtagagtt accgctggat cgcgatttac agagagaagt
    21361 atgactgaat tacccattga tgaaaacacg ccgcgcattt tgattgttga agatgaaccc
    21421 aagctgggac agctgcttat tgactactta cgcgcggcga gttacgcccc cacgctcatc
    21481 aatcatggcg acaaggtact gccgtatgtg cgtcaaacgc cgccggatct gatcctgctg
    21541 gatctgatgc tgccgggtat cgatggtctg acgctatgcc gggagattcg ccgtttttcc
    21601 gacatcccca ttgtgatggt cacggccaaa attgaagaga tcgaccggct gcttgggctg
    21661 gaaatcggcg ccgatgatta tatctgtaag ccttacagcc cacgcgaagt cgtggcccgc
    21721 gtgaaaacca ttttgcgccg ctgtaaaccg cagcgcgaac tccagcagca ggatgccgaa
    21781 agcccgttaa tgattgatga aagccgcttt caggcctcct ggtgtggtaa agcgctggat
    21841 ttaacccccg ctgaattccg tctgctaaaa accttatcgc ttgaaccggg taaagttttt
    21901 tcccgcgagc agttgttaaa ccacctctac gacgactacc gtgtggtgac cgatcgtact
    21961 atcgacagcc acattaaaaa cctgcgccgt aaactggaat cgctggatgc cgaacagtca
    22021 tttatacgcg cggtctacgg ggtgggatat cgctgggaag cggatgcgtg tcgcctggta
    22081 taatgattat tggcataaca ataacaaggt cgtaagacga tattttccgc caacgctatt
    22141 ctggcggaat taacacactg ccctctttca tttggccgag cggtatcccg aaaaccacga
    22201 cgaacgcgat cggggacaat aaattatttg gccgctcttt ttagtttacc gatatactgt
    22261 gagtagtttt ttaaacttat tgcgcattaa ttcattaagt gaatctaaaa atacataaac
    22321 ataatgccag cttaattaca catggatttt tatgacagaa acgtcatctc accgctataa
    22381 accacgcaat ataataaatg cgccaaatgt aaaatcatct attttttccc ggagccaaca
    22441 acgcggcgat agcgaaaata tccagcgctg gttaagcaat catttttatc gttggatcat
    22501 tggtgacttt cctcacgttt accctgtgcg ctccgtcgct gattatgccg tttattttag
    22561 ccctgatgca gaaatccccg cctgggtggc gatgagcgct tttactacct taacgttcag
    22621 cacccgcaac ttgtggcaat ggaaagagat ttagtggaat ttctttcgcg tcaggaagga
    22681 acgcggctgg aaactaaact acagcgcatc aactgcttta ccgtgctggc aatgcgcgaa
    22741 gcggagcatc aaaaaatgca gcacctgcgt gaacaaggtt ggtatccctc caacagcgag
    22801 gcgctaaaac cggtgatggc ggtgaataac ggtgtgctgg ttgagcttga tgcaacaaac
    22861 cccggcctgc gcagtgagat ggcgtatgaa tcctggcata tgcaacactg cgtcggagat
    22921 tttgataata aaggcgcgct ttccggcggc tacggcgatt actacgcccg gcaaattgaa
    22981 caacagaaac ttcgcctgtt cagcctgcgc gacggcaata atattcccca cgtcacaata
    23041 agcctggtgg ttggtaataa cggcctgagc attgatcaga ttaaaggtaa gcaaaatcgc
    23101 catcctatta agaaatatgc taacgatgtt ttatctctgt tacgccatct gcaaccactt
    23161 cctgagcgcc acgctgattg cgaagggatg ggaatagttt atgaatcgac gccggaatat
    23221 tcaggttgga aatttattac tcatattcat gacctcaatt ttctgctcaa tgtgctgcat
    23281 gacaattttc atttaatgga acacttcccc actcccccgg tagctttaca gtggctgctg
    23341 ctgcacagcg ccccggaggc gctgcgctac cttcaggttg ttgatcctaa cgtggcgacg
    23401 gctgcggaaa tgctgtttcc acggcatgaa tggcacccta cgcttgccgg gaaaaacacc
    23461 agtagtgaac ctttcgaaat tgaaagcctg acgctacaaa ccacgcgtta cctccctgtc
    23521 atcaaggagg tgcaataatg ttctggattg ttcttattat tgccgcccta ttttttagct
    23581 ggcgcaacta caaaaaaaaa caaaccgctg attgcggccc gtatcgccga ggagaaagaa
    23641 aaagatcgtc tgaaggatct gcgtcgcgat acccgacggc ggcaatgggc gctggcgcta
    23701 gctgatatcc tcgcccggcg caacgggcta ccgatcaaag gcgttgagct ggtcttcaaa
    23761 cttgacgatg acaaacaccg ctatctggca cagcaggtaa aaaaagagct gggcttgagc
    23821 gaaaacctca acggcgcggc gttacgccac aaggtcgagg atatcttacg ccgctggcct
    23881 gcgggcatcg gcagctcgcc gagcacgttt tatcatcatc tggcggccca gggccaggtc
    23941 cgcgacgcgc tggctttcga ctgcatgcga accgcctttc tgacccgctg tatcgccggg
    24001 ctcggctggt gtgacgaaaa cgaggcctgg ctggtgttat tacttaacgc ccagcgcgct
    24061 caggactgtt ttgattcctg ggaggattac gccaccgcct acgttcgcgc ccgccgggta
    24121 tggctcacgc tacgtgacac gccaatagcg cttgccggac gggatttaca ggaagccacc
    24181 cattatctgc aagaccctgt cagccgctgg cgacaactgc cgtggaatga attcaaaatt
    24241 ttcgagccga tttaaaggac tatttatgga acaggatgat cgtctgctca acgctatgtt
    24301 tgagatgtgc aaccacaaaa atcccctcaa tgacgggcaa cgagagtggc atatcgccga
    24361 tattcccggc ctgctgcgcg aagaacgcta tgacgaactg gacgaacgct acaaccaggc
    24421 gctgacggag agctttacca gccgcgaagc ggaaaagcgc tatttcttcg cctggaatca
    24481 aatggacaac cctttttacg atatggacac gctggttgag gctgggccgc aaggattagc
    24541 gctgatcaaa aactggcagc gcgctcgtcc ccgctccact cacgcctggc ttgccgaggc
    24601 gcaatactgg aatcaccgtg cgtggcttta ccgcagctat ggctgggcga gagaaaccac
    24661 ccgagcgatg tggatctgcg ccgccgcctg caacgaacgg atggtcatcg ccgcgctcaa
    24721 tgctatcgac tgtgaaccgc gccagtggat ggcggcggcc ctgaccagca ccaactcaaa
    24781 agtcttcggc cagcccgact ggctggttga gttcctcgag ggcgcggatg ttgccgggca
    24841 gccattaatg gaagatctgg ctgaatatca tcgccattca ccgcaggagg tggatgcgct
    24901 gatggcccat tccgggctgt cgtttgccga cgcggtttgc ccaaatttgc cgcgcccgtc
    24961 cgtgctgccg gagtgcaatg acgatgccgg gcaaaaatac tggctcgccg tctgcctggc
    25021 tattttcccg acggcatttt acgtgctgga tgaatatatc ccgtttcgta tgccgcgctg
    25081 gggagggtct cacgaggaaa tccgcgaatt tctggaatca agcgtatgcg atcacctttc
    25141 tgccgcagaa cgtgaacatc tggagctatt gatctggtgg gacgatcacc gcgatctgcg
    25201 catcaaagag gttgactccc cggcagaaca ggaacgcatt atcgccaaag ccgaagagat
    25261 tagcctgcga gcgcatatcc aggaatctcg ccacaacacg ctgaagtggc tgcgggtctg
    25321 ctatagcgat ctggacgata atgacgcgct ctggcgaacc cttcagcgtt cgatcgtgga
    25381 aaaagttaag ttcaacaatt acttctttga tgacacgata aagttcgccc tgcgcgattt
    25441 tcctgacacc tggtggatgt ataattttct ctgtcagaat gcgcagcaaa cggaattcgc
    25501 agtgccgaaa atccgtcgtg gctactttca gtacgccggg ttattgggtt tcgaaaagga
    25561 tgaggcgcaa ggcctcgcct ggctcgatag cgtcgccgac attcaatata accataactg
    25621 gcgggcggcg attaaaaatt tcgactggtt cgggctcccg gaacattttg tgccgctggc
    25681 agagctgggc gcacaaagaa atatacccgc cgcgctaaac ctgctgggcc ttgaacacaa
    25741 taataaagag aacaacggcc tactacctta cgatcctgcc atcgcgttag ggtattttca
    25801 gcgcgcggcg gagattttgc accggcggtt agcgctgcgc gagagcaccc cgtacaaatt
    25861 aatagataac ggaggctata ccgactatga aaatgacctg caaaatattc atttcagcat
    25921 cggcatctgc aaccagcgtc tgagtaaaca agaacttgat accgaaaaac gttccgctta
    25981 tgaaaaagaa ctgctcgata atctctggct ggcgcatcag ttcgggcata aagaggcctg
    26041 gggcttgttc ctgctgaata tttttgaagt gaaggatatt acgctggcgc ataagcatct
    26101 ggaactggtg caacaagagg ccaacaaagg cacgctacac gctatggtga ccctatcgcg
    26161 cctgcacggt aataaacacg atcgaacgct gtttaatatg aagctaagcg cacgctgggc
    26221 acattttgcc ttcacgcttt acccggataa tgaaatcgtt atggattgcc tggaccacct
    26281 gcatttcgat tctttctgga aacgctttcg tttcgcctgg tataccgtcc gtatcccgaa
    26341 ttcagagctg ccgggacagg tcaactcaat ggtgtaatgg agtgataata caaagaaaat
    26401 ctctatttct ttgcgccctg cttctactct tcgccaccgc cagggctgaa attacggagc
    26461 agcagatcga ggccgactgc gcaaaaattc cagttttggc cagccagggc gaacagcttt
    26521 acaagaccca aaagtatgcc aaagcactcg acgcttttga acagctggcc gcatggagcg
    26581 aaagctgcgc ccttgacgac aacgccatcg cgacggccta caacaacgtg gcgctaacct
    26641 ggatacgcga aggcgagtgg cgtaaagccc gcgcctggct gatgctaagg ccgaatgata
    26701 gcaagtcgat ctacaacctg aaactgatca aagataagct atcggtcctg ccgccaccgg
    26761 tttccacggc gggtgaatac tggcgctatg ccgggcgcgc ctcctggaac gtgcttagcg
    26821 tgaaggcatt acccacccca tcgcgctatc aggttaattt tcagggttac tggttcggtt
    26881 taatggggat ctacttcggc cccaatatcg gcgagttcta cgcagagata acgctggaaa
    26941 acgataaagc catcgtggcg cttcgggaag gcgatgatat tcactgtgac atttcgctgg
    27001 ctttttcttc tgaaaccatt gatgccagca ctgatacgtt tgtggactgc ggttttggcg
    27061 caaatgtccg cgccgacggg cactatctgc gcgttgaata aatctggcg
//
LOCUS       DAJVSD010000032        26818 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.032, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000032 DAJVSD010000000
VERSION     DAJVSD010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 26818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26818
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.032"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(38..3484)
                     /gene="mfd"
                     /locus_tag="OQP62_001151"
     CDS             complement(38..3484)
                     /gene="mfd"
                     /locus_tag="OQP62_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HCS1720752.1"
                     /translation="MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVL
                     IAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQ
                     RGVLIVPVNTLMQRVCQHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHG
                     EYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFP
                     TDKAAIELFRSQWRDTFEVKRDAEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF
                     PANTLVVNTGSLETSAERFQADTLARFENRGVDPMRPLLPPEALWLRVDGLFSELKRW
                     PRLQLKTDHLPEKAANTNLGFQKLPDLAIQAQQKAPLDALRKFLESFSGPVIFSVESE
                     GRREALGELLARIKIAPKRILRLDEAQDAGRYLMIGAAEHGFIDTQRNLALICESDLL
                     GERVARRRLDSRRTINPDTLIRNLAELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEY
                     LMLTYANDAKLYVPVSSLHLISRYAGGAEESAPLHKLGGDAWSRARQKAAEKVRDVAA
                     ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDR
                     LVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM
                     LSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLIVDEEHRFGVRHKE
                     RIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVV
                     REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND
                     FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL
                     LTPHPKAMTADAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF
                     SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI
                     ASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGTIE
                     FAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQQLEENA
                     IA"
     gene            3822..5021
                     /gene="lolC"
                     /locus_tag="OQP62_001152"
     CDS             3822..5021
                     /gene="lolC"
                     /locus_tag="OQP62_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004976588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolC"
                     /protein_id="HCS1720753.1"
                     /translation="MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTV
                     LSVMNGFERELQNNILGLMPQAILSAEHGSLNPNQMPEKAVNLQGVNRIAPLTTGDVV
                     LQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQSELQPGKYNVILGEQLAGQLGVNRGD
                     QIRLMVPSASQFTPMGRLPSQRLFTVIGTFAANSEVDGYEMLVNIQDASRLMRYPAGN
                     ITGWRLWLDEPLQVDTLSQQTLPQGTKWQDWRERKGELFQAVRMEKNMMGLLLSLIVA
                     VAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMVFMVQGASAGIIGALLGAALGA
                     LLASQLNNLMPIIGAFLDGAALPVAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQP
                     AEALRYE"
     gene            5014..5715
                     /gene="lolD"
                     /locus_tag="OQP62_001153"
     CDS             5014..5715
                     /gene="lolD"
                     /locus_tag="OQP62_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HCS1720754.1"
                     /translation="MNKILLQCDNLCKRYQEGTVQTDVLHDVSFSIGEGEMMAIVGSS
                     GSGKSTLLHLLGGLDTPTSGDVIFSGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF
                     TALENVAMPLLIGKKKPAEIDARAREMLHAVGLEHRATHRPSELSGGERQRVAIARAL
                     VNNPRLVLADEPTGNLDARNADSIFELLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM
                     RDGRLTAELSLMGAE"
     gene            5715..6959
                     /gene="lolE"
                     /locus_tag="OQP62_001154"
     CDS             5715..6959
                     /gene="lolE"
                     /locus_tag="OQP62_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolE"
                     /protein_id="HCS1720755.1"
                     /translation="MASPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVG
                     LSAMNGFERELNNRILAVVPHGEIEAVNQPWTNWREALAKVQKVPGIAAAAPYINFTG
                     LVESGANLRAIQVKGVDPKQEQQLSALPSFVQNHAWDHFKAGEQQIIIGKGVADALNV
                     KQGDWVSIMIPNANADHKLLQPKRVRLHVIGILQLSGQLDHSFAMIPLEDAQQYLDMG
                     SSVSGIALKVHDVFNANKLVRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAM
                     ILVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLLGSLIG
                     VAIGVVVSLQLTAIINGIEKEIGHQFLSGDIYFIDFLPSELHWLDVVYVLVTALLLSL
                     LASWYPARRASNIDPARVLSGQ"
     gene            6988..7896
                     /gene="nagK"
                     /locus_tag="OQP62_001155"
     CDS             6988..7896
                     /gene="nagK"
                     /locus_tag="OQP62_001155"
                     /EC_number="2.7.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
                     /protein_id="HCS1720756.1"
                     /translation="MYYGFDIGGTKIALGVFDSTRRLQWEKRVPTPHTSYSAFLDAVC
                     ELVAEADQRFGVKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRL
                     DNDANCFALSEAWDDEFTQYPLVMGLILGTGGGGLVLNGKPITGQSYITGEFGHMRLP
                     VDALTLMGFDFPLRRCGCGQMGCIENYLSGRGFAWLYQHYYDQSLQAPEIIALWEQGD
                     EQAHAHVERYLDLLAVCLGNILTIVDPDLLVIGGGLSNFTAITTQLAERLPRHLLPVA
                     RAPRIERARHGDAGGMRGAAFLHLTD"
     gene            7915..8736
                     /gene="cobB"
                     /locus_tag="OQP62_001156"
     CDS             7915..8736
                     /gene="cobB"
                     /locus_tag="OQP62_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent protein deacylase"
                     /protein_id="HCS1720757.1"
                     /translation="MQSRRFHRLSRFRKNKRLLRERLRQRIFFRDRVVPEMMENPRVL
                     VLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFARNPGLVQTFYNARRQQLQQP
                     EIQPNAAHLALAKLEEALGDRFLLVTQNIDNLHERAGNRNIIHMHGELLKVRCSQSGQ
                     ILEWNGDVMPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGH
                     VYPAAGFVHEAKLHGAHTVELNLEPSQVGSEFEEKHYGPASQVVPEFVDKFLKGL"
     gene            complement(8818..9864)
                     /gene="potD"
                     /locus_tag="OQP62_001157"
     CDS             complement(8818..9864)
                     /gene="potD"
                     /locus_tag="OQP62_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein PotD"
                     /protein_id="HCS1720758.1"
                     /translation="MKKWSRHLLAAGALALGMSAAHASDNDTLYFYNWTEYVPPGLLE
                     QFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKS
                     KLTNFHNLDPEMLNKPFDPNNDYSVPYIWGATAIGVNSDAIDPKTITSWADLWKPEYK
                     NSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYEELKKLMPNVAAFNSDNPANPY
                     MEGEVNLGMVWNGSAFVARQAGTPLEVVWPKEGGIFWMDSLAIPANAKNKEGALKLIN
                     FLLRPDVAKEVAETIGYPTPNLAARKLLSPEVANDKSLYPDAQTISKGEWQNDVGDAS
                     AIYEEYYQKLKAGR"
     gene            complement(9889..10668)
                     /gene="potC"
                     /locus_tag="OQP62_001158"
     CDS             complement(9889..10668)
                     /gene="potC"
                     /locus_tag="OQP62_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HCS1720759.1"
                     /translation="MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTT
                     KWYELLVNNDSLLQAAQHSLTMAIFSATFATLIGSLTAVALYRYRFRGKPFVSGMLFV
                     VMMSPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFSLPFVVVTVYSRLKGFDVRMLE
                     AAKDLGASEVTILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPGYEILPLKI
                     YSMVKVGVSPEVNALATVLLVLSLVMVIASQLIARDKTKGR"
     gene            complement(10984..11994)
                     /gene="sifA"
                     /locus_tag="OQP62_001159"
     CDS             complement(10984..11994)
                     /gene="sifA"
                     /locus_tag="OQP62_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-2 type III secretion system effector SifA"
                     /protein_id="HCS1720760.1"
                     /translation="MPITIGNGFLKSEILTNSPRNTKEAWWKVLWKKIKDFFFSTGKA
                     KADRCLHEMLFADRTPTRERFTEIFFELKELACASQRDRFQVHNPHENDDTIILRIMD
                     QNEENELLRITQNTDTFSCEVMGNAYFLIKDRPDILKPHPQMTAMINRRYSEIVDYPL
                     PSTLCLNPAGAPTLSVPLDNIEGYLYSEWRKGNLDEWKTQEKATYLAAKIQSGIEKTT
                     RILQHANISESTQQNAFLETMTMCGLKQLEIPPPHTHIPIEKMVEEVLLADKTFQAFL
                     VTDPSASLSMLAEIVEAISDQVFHAIFRIAPQSIQKMAEEQLTTLHVRSEQQSGYLCC
                     FL"
     gene            complement(12323..13186)
                     /gene="potB"
                     /locus_tag="OQP62_001160"
     CDS             complement(12323..13186)
                     /gene="potB"
                     /locus_tag="OQP62_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotB"
                     /protein_id="HCS1720761.1"
                     /translation="MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFV
                     KMVFTLDNYARLLDPLYFEVLLHSLNMALIATLSCLVLGYPFAWFLAKLPEKIRPLLL
                     FLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYI
                     LLPFMVMPLYSSIEKLDKPLLEAARDLGASKMQTFIRIIIPLTMPGIVAGCLLVMLPA
                     MGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDWPFGAATSITLTIVMGLMLLIYWRASR
                     LLNKKVSDISD"
     gene            complement(13170..14306)
                     /gene="potA"
                     /locus_tag="OQP62_001161"
     CDS             complement(13170..14306)
                     /gene="potA"
                     /locus_tag="OQP62_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein PotA"
                     /protein_id="HCS1720762.1"
                     /translation="MGQSKKLNKQPRSLSPLVLLSGISKSFDGKEVISQLDLTINNGE
                     FLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQSYALFP
                     HMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIAR
                     AVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI
                     VVMRNGVIEQDGTPREIYEEPKSLFVAGFIGEINRFDATVIERLDEQRVRASVEGREC
                     NIYVNFAVELGQKLNVLLRPEDLRVEEINDDNHIEGLIGYVRERNYKGMTLESVVELE
                     NGKMVMVSEFFNEDDPDFDHSLDQKMAISWVESWEVVLADEEHK"
     gene            14557..15786
                     /gene="pepT"
                     /locus_tag="OQP62_001162"
     CDS             14557..15786
                     /gene="pepT"
                     /locus_tag="OQP62_001162"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HCS1720763.1"
                     /translation="MDKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEE
                     MGLVNITLSEKGTLMATLPANVEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGD
                     IALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLKGNPI
                     PHGEIKVAFTPDEEVGKGAKHFDVEEFGAQWAYTVDGGGVGELEFENFNAASVNIKIV
                     GNNVHPGTAKGVMVNALSLAARIHAEVPADEAPETTEGYEGFYHLASMKGTVDRAEMH
                     YIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILD
                     IAQQAMRDCHITPEMKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEK
                     AVQVIVRIAELTGKRGQ"
     gene            15790..17124
                     /locus_tag="OQP62_001163"
     CDS             15790..17124
                     /locus_tag="OQP62_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720764.1"
                     /translation="MLHIVVKRFIIYGGIFSAINFSAWSAEYTPSWSQRQQQSAACFM
                     TGDETCMTFIDDAVRLASRQYGKRSIQLVRSLLLQSDIYQWLGKPELTPQMLLRARAI
                     MKTFPAGTYPGDRADMFEHLAAFYVYGDDRHIEYSPTEQWRYEIKVDYRQRIAWQEQA
                     LTWRLKDKKTSTEALVYTLNRMRDAYSDALEERDVECDSARKAYYLAKIDAAERQWLS
                     VILRDKTWDNRERVASFLQQKADIAYNAGHISEAINALSQALKIEQTLYGTEFGEMTV
                     DSNNLAGFYAQGHHYKEAKDLYLKLIAYYQSRLTPMATVISRLRFYLPENIDLDSTSP
                     YLPLLEEYKRRQSDVSMVLYGISLLYKNNQQLEQAKDFAERAFTLDAVAYPAKMQYER
                     LQQLANIAEGLGDNAQARRYRQMSFRHRMAHSIYPGDPQYNDFAKPGGDRCG"
     gene            complement(17164..18285)
                     /locus_tag="OQP62_001164"
     CDS             complement(17164..18285)
                     /locus_tag="OQP62_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HCS1720765.1"
                     /translation="MEYQLTLNWPDFLERHWQKRPVVLKRGFTNFIDPLSPDELAGLA
                     MESEIDSRLVSHQDGKWQVSHGPFESYDHLGESNWSLLVQAVNHWHEPTAALMRPFRA
                     LPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMRQHCPHPDLL
                     QVDPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNSRELISGFADYV
                     LQRDLGNTYYSDPDMPSRKHPADILPQEMDKLRNMMLDLINQPAHFQQWLGEFISQSR
                     HELDIAPPEPPYQPDEIYDALKQGEALVRLGGLRVLRIGDEVYANGEKIDSPHRPALE
                     ALTSHIVLTAENFGDALEDPSFLAMLAALVNSGYWFFEG"
     gene            complement(18366..19829)
                     /gene="phoQ"
                     /locus_tag="OQP62_001165"
     CDS             complement(18366..19829)
                     /gene="phoQ"
                     /locus_tag="OQP62_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     PhoQ"
                     /protein_id="HCS1720766.1"
                     /translation="MNKFARHFLPLSLRVRFLLATAGVVLVLSLAYGIVALVGYSVSF
                     DKTTFRLLRGESNLFYTLAKWENNKISVELPENLDMQSPTMTLIYDETGKLLWTQRNI
                     PWLIKSIQPEWLKTNGFHEIETNVDATSTLLSEDHSAQEKLKEVREDDDDAEMTHSVA
                     VNIYPATTRMPQLTIVVVDTIPIELKRSYMVWSWFVYVLAANLLLVIPLLWIAAWWSL
                     RPIEALAREVRELEDHHREMLNPETTRELTSLVRNLNQLLKSERERYNKYRTTLTDLT
                     HSLKTPLAVLQSTLRSLRNEKMSVSKAEPVMLEQISRISQQIGYYLHRASMRGSGVLL
                     SRELHPVAPLLDNLISALNKVYQRKGVNISMDISPEISFVGEQNDFVEVMGNVLDNAC
                     KYCLEFVEISARQTDDHLHIFVEDDGPGIPHSKRSLVFDRGQRADTLRPGQGVGLAVA
                     REITEQYAGQIIASDSLLGGARMEVVFGRQHPTQKEE"
     gene            complement(19829..20500)
                     /gene="phoP"
                     /locus_tag="OQP62_001166"
     CDS             complement(19829..20500)
                     /gene="phoP"
                     /locus_tag="OQP62_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator PhoP"
                     /protein_id="HCS1720767.1"
                     /translation="MRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHL
                     PDIAIVDLGLPDEDGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKP
                     FHIEEVMARMQALMRRNSGLASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMET
                     LIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY
                     LFELR"
     gene            complement(20627..21997)
                     /gene="purB"
                     /locus_tag="OQP62_001167"
     CDS             complement(20627..21997)
                     /gene="purB"
                     /locus_tag="OQP62_001167"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002950897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HCS1720768.1"
                     /translation="MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWL
                     QKLAAHAAIKEVPAFAADANGYLDTLVANFNEEDAARIKTIERTTNHDVKAVEYFLKE
                     KAAAIPALHDVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQVINAVKDLATQ
                     YRDIPLLSRTHGQPATPSTLGKEMANVAYRMERQFRQLNQVEILGKINGAVGNYNAHI
                     AAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCIARFNTILIDFDRDVW
                     GYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLHHLANKLPVSRWQ
                     RDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTV
                     MRRYGIEKPYEKLKELTRGKRVDAEGMKQLIDSLALPEAEKTRLKAMTPANYIGRAVN
                     LVDELK"
     gene            complement(22001..22642)
                     /gene="hflD"
                     /locus_tag="OQP62_001168"
     CDS             complement(22001..22642)
                     /gene="hflD"
                     /locus_tag="OQP62_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high frequency lysogenization protein HflD"
                     /protein_id="HCS1720769.1"
                     /translation="MAKNYYDITLALSGICQSARLVQQLAHQGHCDADALHVSLNSVI
                     DMNPSSTLGVFGGSEANLRLGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSA
                     KGALNTLGDRINGLQRQLDHFDLQSDTLMSAMAGIYVDVISPLGPRIQVTGSPAVLQS
                     PQVQAKVRASLLAGIRAAVLWHQVGGGRLQLMFSRHRLTTQAKQILAYLTPEL"
     gene            complement(22729..23835)
                     /gene="mnmA"
                     /locus_tag="OQP62_001169"
     CDS             complement(22729..23835)
                     /gene="mnmA"
                     /locus_tag="OQP62_001169"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309632.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HCS1720770.1"
                     /translation="MSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDD
                     GEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC
                     NKEIKFKAFLEFAAEDLGADYIATGHYVRRADVNGKSRLLRGLDGNKDQSYFLYTLGH
                     EQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQP
                     GKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQG
                     HEHPRLMSVGLIAQQLHWVDREPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEVIFD
                     EPVAAVTPGQSAVFYSGEVCLGGGIIEQRLPLTV"
     gene            complement(23889..24350)
                     /locus_tag="OQP62_001170"
     CDS             complement(23889..24350)
                     /locus_tag="OQP62_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HCS1720771.1"
                     /translation="MFKPHVTVACIVHAEDKFLVVEETINGKSLWNQPAGHLEADETL
                     AQAAARELWEETGITAQPQYFIRMHQWIAPDKTPFLRFLFAIKLDHICATAPHDNDID
                     CCRWVSADEILNAPNLRSPLVAESIRSYQTGQRYPLSIVGEFNWPFTEGVK"
     gene            complement(24362..24691)
                     /locus_tag="OQP62_001171"
     CDS             complement(24362..24691)
                     /locus_tag="OQP62_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1311 domain-containing protein"
                     /protein_id="HCS1720772.1"
                     /translation="MKRLLIAFALLTPLSVNAASFDCQKAQAADEKAICAHLTLNDKD
                     VEMHTKYQFLKGLFAMGSRGALQDAQQSWLKQRQQCKADVTCLTKAYNERLKQLDAIY
                     DHIDKPL"
     gene            complement(24688..25353)
                     /gene="rluE"
                     /locus_tag="OQP62_001172"
     CDS             complement(24688..25353)
                     /gene="rluE"
                     /locus_tag="OQP62_001172"
                     /EC_number="5.4.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2457) synthase RluE"
                     /protein_id="HCS1720773.1"
                     /translation="MRQLISSENTMQKTSFRNHYVKRFSSRQASKSRKENQPKRVVLF
                     NKPYDVLPQFTDEAGRRTLKDFIPVQGVYAAGRLDRDSEGLLVLTNDGALQARLTQPG
                     KRTGKIYYVQVEGIPDNAALQALRTGVTLNDGPTLPAGIEIVAEPDWLWPRTPPIRER
                     KNIPTSWLKVTLYEGRNHQVRRMTAHVGHPTLRLIRYSMGDYTLNGLDNGQWCEIAQE
                     KDR"
     gene            25525..26775
                     /gene="icd"
                     /locus_tag="OQP62_001173"
     CDS             25525..26775
                     /gene="icd"
                     /locus_tag="OQP62_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000444467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HCS1720774.1"
                     /translation="MESKVVVPVEGKKITLQNGKLNVPENPIIPFIEGDGIGVDVTPA
                     MLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIRDYRVAIKGP
                     LTTPVGGGIRSLNVALRQELDLYVCLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIY
                     AGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAI
                     TNDRDSVTLVHKGNIMKFTEGAFKDWGYQLARDEFGGELIDGGPWLKIKNPNTGKEIV
                     VKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECAL
                     FEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMQWFEAADLIVKGMEGAIAAKTVTYD
                     FERLMDGAKLLKCSEFGDAIIANM"
BASE COUNT         6278 a         6769 c         7188 g         6583 t
ORIGIN      
        1 taggccgggc gcagagtaat gacgcccggc ctgacgctta tgcaatagcg ttttcttcca
       61 gttgctgcat gaactggcgt acccagtcta tacgcgtttt acgttcgctt aaatcctgaa
      121 taaacttgag gcgcgtcggg ccatccagac ggaaatgctg cggctgtttt tgcagtaacc
      181 cgataagcca ggcggggtca acgtggtttt tctcggcgaa ctcaatcgtt ccacctttct
      241 cgttaccctc cagttttcgg atgccgagct tttgcgcctg ttggcgcagg cgggcgatat
      301 ccagcagatt acgcgccgga tcgggcagca ggccgaagcg gtcgatcaat tccactttga
      361 tctcttccag ctcgttttcg ttcttcgcgc tggcaatgcg tttatagaat gacagccggg
      421 tattaacatc cggaataaaa tcatccggca gtaacgacgg cattcgcagc tcgacttccg
      481 tttgctgact ggtgagatct tccagcgagg gttcgcggcc tgctttcagc gcatcaacgg
      541 cgttttccag caattccatg tagagtgaga agccaatggt ttccattgag ccgctttgct
      601 cttcgccaag cagctcgccc gcgccgcgga tctccagatc gtgggtcgcc agcgcaaacc
      661 cggcgcctaa atcctccagc gacgcaatcg cctccagccg tttttgcgca tcggcggtca
      721 tggccttagg atgtggcgtc aacagccagg cgtaggcctg gtggtgcgag cgccctacgc
      781 ggccacgcag ctggtgcaac tgcgcgaggc cgaaatgatc cgcgcgttca atgatgatcg
      841 tgttagcggt gggaatgtcg atccccgttt cgataatggt agtacacacc agcacgttaa
      901 aacgttgatg gtggaaatcg ttcatgaccc gttccagctc acgttcgcgc atctgcccgt
      961 ggcctatagc gattcgcgct tccggcacca gttccgccag ccgctctgcg gctttctgaa
     1021 tattttcgac gtcattgtac aaatagtaaa cctgaccgcc gcgcaggatt tcacgcagaa
     1081 tcgcttccct taccaccagg ctatcatact cgcggacaaa ggtttttacc gccagacgac
     1141 gggcaggggg agtggcgata atggagagat cgcgcatacc gctcatcgcc atattcagcg
     1201 tccgcgggat cggcgtcgcc gtgagcgtca gaatatcgac atcggcgcgc atcgccttaa
     1261 ttcgctcttt gtggcgcacg ccgaaacggt gctcttcatc gacaatcagc aggccgaggt
     1321 cgcgtagctt cacatcgctt tgtagcagtt tatgcgtacc gatcagaata tcgatcttac
     1381 cttcggcggc ttccgccagg atttgcgtct gctctttggc gctgcgaaag cgggacagca
     1441 tctcaatgcg taccggccag ttggcgaaac ggtcgcggaa gttgtcatag tgttgctgcg
     1501 ccagcagcgt agtcggcacc agtaccgcca cctgtttatg gttttccacc gccaggaacg
     1561 cggcgcgcat cgccacttcg gttttgccga agccgacgtc gccgcacacc agcctgtcca
     1621 tcgccagcgg ttggcacata tcgctcaata cggcgttaat cgcctgtgcc tgatcgggcg
     1681 tcgtttcaaa cgggaagctg tcgcagaata actgatactg ctcacgatca tgcttaaagg
     1741 caaaaccctc ttttgccgct cgttgcgcat aaatatccaa cagttccgct gcgacatcgc
     1801 gcactttttc cgccgctttc tgccgggcgc gcgaccaggc gtcgccgccc agtttatgca
     1861 gcggcgcact ttcttccgcg ccgccggcat agcggctaat cagatgcaat gaggagaccg
     1921 gcacatacag tttggcgtca ttggcgtaag tgagcatcag atattcaccc ttgatgccgc
     1981 cagcctccag agtggtcatg ccggcatagc gtccgacgcc gtgctccaga tgcactaccg
     2041 gttgaccgac gtggagctcc gccaggttac gaatcaacgt atccgggttg atcgtgcggc
     2101 gggaatccag gcggcgacgc gccacccgct cacccaaaag atcgctttca caaatcagcg
     2161 ccagattgcg ttgggtgtcg ataaagccat gttctgcggc gccaatcatc agatagcgtc
     2221 ccgcatcctg cgcctcgtcc aggcgtaata ttcgcttcgg cgcgattttt atgcgagcca
     2281 ggagctctcc cagagcttcg cggcgtcctt cgctttccac cgaaaaaatc accggaccgc
     2341 tgaaagattc gaggaactta cgcagcgcgt ccagcggcgc tttctgctgt gcctggatag
     2401 ccaaatccgg taatttctgg aaaccgagat tggtattggc ggctttttcc ggcagatggt
     2461 cggttttaag ctggaggcga ggccagcgtt taagctcgga aaagagccca tccacccgta
     2521 gccagagggc ttccggcggc aaaagcgggc gcataggatc gacgccacga ttttcaaaac
     2581 gcgccagcgt atcggcctga aagcgttcgg cgctggtttc cagcgagccg gtattcacca
     2641 ccagagtatt ggcggggaaa tagctaaata atggcggtaa cggttcgctg aaaaagagcg
     2701 gctgccagta ttcgatcccg gcgggcagag tgcctttgct aacctgctga tagatgtgct
     2761 cggcgtcgcg ttttacctca aaggtatcgc gccactggct acggaaaagc tcaatagcgg
     2821 ctttgtcggt aggaaattcg tgcgcgggca acaaattgat ggcctcaacc tcctccagcg
     2881 tacgctgggt atccgcgtca aacagacgca ggctgtcaat ttcatcatca aaaaagtcga
     2941 ggcgataagg ctgttcgctg cccatcggaa agagatccaa cagcgcgccg cgcgtcgcgt
     3001 attcgccatg ctccatcacc tgatcgacat gccgataacc ggcgctgtca agctgcgcgc
     3061 gcagagcgtc gcgggacagc cgctggcctt ttttcatcac cagcgcatga ccatgcagat
     3121 agctatgctg acaaacgcgc tgcatcaggg tgtttaccgg tacaatcaag acgccgcgct
     3181 gcattgacgg caactggtag agcgtggaca ggcgcgaaga gataatttcc tgatgcgggg
     3241 agaagctgtc atacggtagc gtttcccagt ccgccaggtt catgaccatc tgatcggtaa
     3301 actggcggat ttcatcatgc aatcgcagag cattttgcat gtcaggcgct atgagtacca
     3361 ccggaccggc atggcgttca gctatctccg ccaccagcgt agcgcaggcg gcaccggtaa
     3421 gttcgcccaa ctggcgctga tcgcccgctt ttgtcggcag cgtgtaacgt tgtttttcag
     3481 gcataacggt tgtcagtatc tctttttgtt ttacgccgca ctctacgcgt cacccttcag
     3541 gctgcttcat ggttggctgc gcgccaggac agcatgaagg actcaggtat tcaggggcat
     3601 atgactgata agcaatgttc tttattatcc gcgatcgttg tttattagca aattgaatcc
     3661 gccggataac acgccgaaca ggtaaagtat gaacatgtaa gtgacttgat ttgtcggcct
     3721 ttttcagaat aacgctgacg aactcttacg gttcagacat ttacgcattc cgctttcgct
     3781 tatatactcg ggactttgct aacagcaacc agacggatta catgtatcaa cctgtcgctt
     3841 tattcatcgg cctgcgttac atgcgcgggc gtgcagcaga tcgcttcggt cgcttcgttt
     3901 cctggctttc cactatcggc attaccctgg gggtgatggc gctggtcacg gtattgtcgg
     3961 tgatgaacgg ttttgagcgc gaactgcaaa ataacattct tggtttgatg cctcaggcca
     4021 tcctctctgc tgaacatggt tctcttaacc cgaatcagat gccggaaaaa gcggtgaatc
     4081 tgcaaggcgt taaccgtatt gcgccgctga cgacgggcga tgtcgtactg caaagcgcgc
     4141 gtagcgttgc ggttggcgtg atgttgggta tcgatccggc gcaaaaagat ccgttaacgc
     4201 cgtatctggt caatgtgaag caaagcgaat tacagccggg taagtataat gtcatcctcg
     4261 gcgagcagct cgccggacag ttaggggtca accgcggcga tcagattcgg ctaatggtgc
     4321 catctgccag ccagtttacg ccaatgggac gcctgcccag ccagcgtctg tttacggtga
     4381 ttggcacatt tgccgccaat agcgaggtcg atggctatga aatgctggtc aatattcagg
     4441 acgcgtcgcg tttaatgcgc tatccggcag gcaatattac cggctggcgt ctgtggctgg
     4501 atgaaccgct gcaagtcgat actctcagcc aacagacgct gccgcaaggc acgaagtggc
     4561 aggactggcg cgaacgtaaa ggcgagttgt tccaggctgt gcgcatggaa aagaacatga
     4621 tgggattgtt gctgagcctc atcgtggcgg tcgcggcttt taacattatt acttcgttgg
     4681 gtctgatggt catggagaag cagggcgaag tggcgatttt acaaactcaa gggctgacgc
     4741 cgcgacaaat tatgatggtc tttatggtgc agggcgccag cgccgggatt atcggcgcgc
     4801 tgttgggcgc cgcgctgggc gcattgcttg ccagccaact gaataacctg atgccgatca
     4861 tcggcgcgtt tctggatggc gctgcgttgc ccgtggcgat agagccgtta caggtgatcg
     4921 ttatcgcgct ggtggcaatg gccatcgcgc tgctttctac gctttatcct tcctggcgcg
     4981 ctgccgccac tcaacccgct gaggctttac gttatgaata agatcctgtt gcaatgcgac
     5041 aacctgtgca aacgctatca ggaaggcacc gtacaaaccg acgtgttgca cgatgtcagc
     5101 ttcagtatcg gcgaaggcga aatgatggcg atcgtcggca gttccggttc gggtaaaagt
     5161 acgttgctgc atctgttagg cgggctggat acgcctacct ctggcgatgt gatttttagc
     5221 ggccagccga tgagcaaact ctcttctgcg gcaaaagcgg aattacgtaa ccagaaactg
     5281 gggtttatct atcagtttca tcatctcctg ccggatttta cggcgctgga aaacgtggcg
     5341 atgccattat tgattggcaa aaagaaaccg gcggagattg acgctcgggc gcgagaaatg
     5401 ttgcatgctg tagggctgga gcatcgcgca acccatcgac cttcggaact ttccggcggt
     5461 gagcgccagc gtgtcgcgat agcgcgcgcg ttggtgaata acccgcgtct ggtactggcg
     5521 gatgagccga ccggtaatct ggatgcgcgt aatgccgaca gtatttttga gcttctgggc
     5581 gagttaaatc gtctgcaggg aaccgcgttt ctggtggtga ctcacgattt gcaactggcg
     5641 aaacgtatga gccgccagct tgagatgcgc gatggccgcc tgacagcgga actgagcctg
     5701 atgggggctg agtaatggcg tcgcctttat cattgttaat tggcttgcgt ttcagccgtg
     5761 gacggcggcg cggcggtatg gtttcgctca tttccgtcat ttctaccatc ggtatcgcgc
     5821 tgggcgtggc ggtgttgatt gtcggtttaa gcgcgatgaa cggtttcgaa cgcgagttga
     5881 ataaccgtat tctggcggtg gttccacacg gggagattga agcggtcaat cagccgtgga
     5941 ccaactggcg tgaagcgctg gcaaaagtgc agaaggtgcc gggcattgcc gccgccgcgc
     6001 cgtatatcaa ttttaccggc ctggtagaga gcggggcgaa tttgcgcgcc attcaggtta
     6061 aaggcgtcga tcctaagcaa gagcagcagc ttagcgcgtt accgtcattt gtgcaaaatc
     6121 acgcctggga tcatttcaaa gcgggcgagc agcagatcat tatcggtaaa ggcgtcgccg
     6181 atgcgctgaa cgtgaaacag ggcgactggg tgtccatcat gatccccaat gcgaatgccg
     6241 accataagct gctccagccc aaacgcgtgc gtttgcatgt catcgggatt ctgcaactga
     6301 gcggccagct cgatcacagc ttcgccatga tcccgcttga ggatgcgcag cagtatctgg
     6361 atatggggtc cagcgtttcc ggtatcgcgc ttaaagtcca cgacgtgttt aatgcgaaca
     6421 aactggtgcg tgatgcgggt gaagtgacta acagctatgt ctacattaag agctggatcg
     6481 gcacctacgg ctatatgtat cgcgatatcc agatgattcg cgccattatg tatctggcga
     6541 tgattctggt gatcggcgtg gcctgtttta atatcgtttc caccttagtg atggcggtaa
     6601 aagacaaaag cggcgacatt gcggtattaa gaacgctggg ggcgaaagat ggtttgattc
     6661 gtgccatttt cgtctggtac ggactactgg cgggcttgct gggcagcttg attggcgtgg
     6721 cgatcggcgt tgtcgtttcg cttcagctta ccgccattat taatgggatt gaaaaggaga
     6781 tcgggcatca gtttttgtcc ggcgatatct attttatcga cttcctgcca tccgaattac
     6841 attggctgga cgttgtttac gtactggtca cggcgttgtt gttaagctta ctggcgagct
     6901 ggtatccggc gcggcgggcg agcaacattg accctgcgcg agtattgagc ggccagtaat
     6961 cgcggaatat aaaaacaagg agcggcgatg tattacgggt ttgacattgg cggaacaaag
     7021 attgcgttag gcgtatttga ctcaacgcgg cggctgcagt gggaaaaacg ggttcccacg
     7081 ccccatacca gctatagcgc ctttttagac gccgtgtgcg aactggtcgc ggaagccgac
     7141 cagcgatttg gcgtaaaagg gtcggtaggg attggcatac ccggtatgcc ggaaactgaa
     7201 gacggcacgc tgtacgccgc gaatgtcccg gcagccagcg gtaagccgtt gcgcgccgat
     7261 ctcagcgccc gactggatcg cgatgtgcgt ctggacaatg acgctaactg ttttgccttg
     7321 tccgaagcct gggatgatga attcacgcaa tatcctttgg ttatggggct tatcctcggc
     7381 accggcggcg gcggcctggt gctaaacggg aagccgatta ccggtcagag ctatatcacc
     7441 ggcgagtttg gccatatgcg tttgccggtt gacgcgctaa cgttgatggg gtttgatttt
     7501 cctctccgcc gttgtggatg cggccagatg ggctgcattg agaattatct gtccgggcgc
     7561 gggtttgcgt ggctatatca acattattat gatcaatcgc tgcaggcgcc ggagattatc
     7621 gcgttgtggg agcagggtga tgagcaggcg cacgcgcatg ttgagcgcta tctggattta
     7681 ctggcggttt gtctggggaa tatactgacg attgtcgatc ccgatttatt ggtgatcggc
     7741 ggcggactat cgaactttac ggcaataaca acgcaactgg cggaaagact gccgcgccat
     7801 ctcctccctg ttgcccgcgc gccgcgcatt gagcgtgcgc ggcatgggga tgcaggtggg
     7861 atgcgcggtg ctgctttttt acatcttacc gactaatcaa aaaaagaggt tgttatgcag
     7921 tcgcgtcggt ttcatcgatt aagccgcttt cgtaaaaata aacgtctgtt gcgtgaacgt
     7981 ctgcgccagc ggatcttttt cagagacaga gtggtgccgg aaatgatgga aaacccaaga
     8041 gtattagtcc ttacaggtgc aggaatttct gcagagtctg gtattcgtac gtttcgcgcg
     8101 gcggatggcc tttgggaaga gcatcgggtt gaagacgtgg caacgccgga aggattcgcc
     8161 cgtaatccgg ggctggtgca gacattttat aatgcccgcc gtcagcagct tcaacagccg
     8221 gaaatacaac ccaatgcggc gcatctggcg ttagcgaagc ttgaagaagc gcttggcgat
     8281 cgctttttgc tggtgacgca aaacatcgac aatttgcatg aacgcgcggg caaccgcaac
     8341 atcattcata tgcatggcga gctgttgaag gtgcgctgtt cgcaaagcgg ccagattctg
     8401 gaatggaacg gcgatgtgat gccggaagat aaatgtcact gctgccagtt cccggcgccg
     8461 ctacgtccgc acgtggtgtg gtttggcgag atgccgcttg gcatggatga aatttatatg
     8521 gcgctgtcga tggcggatat ttttatcgcc attggcacat ccggtcatgt ctatccggct
     8581 gcgggttttg tgcatgaagc aaaactgcac ggcgcacata cggtggaact gaatcttgag
     8641 ccaagccagg tcggcagcga gtttgaagag aagcactacg gcccggcaag ccaggttgtg
     8701 ccggaatttg ttgataaatt cctgaaaggg ctgtagtgcc gtttgcccgg taacgcctta
     8761 tccggcctac atttcacgtt acgttcatct gtaggcccga caggcgcttt ggctgaatta
     8821 gcgtcctgct tttagcttct gataatactc ttcataaatg gcgctggcgt cgccgacatc
     8881 gttttgccac tcgcctttgc tgatggtttg cgcatccgga tagagcgact tatcattggc
     8941 gacctccggg cttaacagct tacgcgccgc caggttgggg gtagggtagc cgatggtttc
     9001 tgccacctct ttcgcgacgt caggacgcag caggaagttg attagcttca gcgcgccctc
     9061 tttatttttc gcgtttgccg gaatagccag gctatccatc cagaaaatac cgccttcttt
     9121 cggccagacg acctccagcg gcgtgccagc ctgacgagca acgaaggccg aaccgttcca
     9181 caccatcccc agattgactt ccccttccat atacggattc gccggattat cggagttgaa
     9241 ggccgctacg ttcggcatca gttttttcaa ctcttcatat gccgcttcga tctctttagg
     9301 atcggtagtg ttaccggaat aacctagctt gcgcagcgcc atctggaaga cttctcgcgc
     9361 atcgtcggtt aaaagcaggc tgtttttata ttccggtttc cacaaatcag cccagctggt
     9421 aatggttttt ggatcgatag catcgctgtt cacgccaatc gccgttgcgc cccagatata
     9481 cggaacagaa taatcgttgt tggggtcaaa cggtttgttg agcatttccg gatcgaggtt
     9541 gtggaaattg gttaatttcg acttatcgat cttctggatc atgccttctt tgcgcatttt
     9601 gtcgacatag tatgtagaag gaacaaccag gtcatacgcg ccatctttat aggttttgag
     9661 tttggcatac atggtttcgt tcgactcgta ggtcgaataa atcaccttaa tgcctgtctc
     9721 tttagtgaac tgttccagca ggcccggcgg tacatactca gtccagttat agaaatagag
     9781 cgtgtcgttg tcggaggcat gagcggcact catacccagc gccagggcgc ctgccgcgag
     9841 caggtggcgt gaccattttt tcatttaacg tcccctgaat tacgggcctt atcggccctt
     9901 ggttttatca cgagcaataa gctggctggc aatgaccatt accagagaca gcaccaataa
     9961 aacggtcgcc agcgcgttca cttctggtga aacgccgact tttaccatgg aataaatctt
    10021 taagggtaaa atttcatagc ccggcccggt gacaaacgac gagactacta catcgtccat
    10081 cgacaacgta aagctcagca accagcccgc cgccaccgcc ggcatcgcca gcggcagaat
    10141 gattttgcgt aaaatcgtta cctcactggc ccccaggtct tttgcggctt ccagcattct
    10201 gacatcaaag cctttcaggc gcgaatagac cgtgacgacc acaaacggca ggctaaaggt
    10261 gatgtgcgag aacagcaacg accaaaagcc cagttgaatg ccgagtaaca taaacagcac
    10321 cagcagggag atcgccatca cgatatccgg cgacatcatt actacaaaca gcatcccgct
    10381 gacgaatggc ttcccgcgaa agcggtagcg ataaagcgct accgcggtta acgagccaat
    10441 caacgtggcg aaggtcgctg agaaaatcgc catcgtcagt gaatgttgag cggcctgtaa
    10501 cagactgtcg ttattgacca gtagttcgta ccatttagtg gtaaagccct gccagttaat
    10561 gccgaaccgc gaactgttga aggagttcac gatcagaata atgatgggaa tatacagata
    10621 cgcatagatg gcagtcatga aaccgccacg gagcagccga ccgatcattc aagttccacc
    10681 ttcttattca gaggatgggg tgcttttaga gtattgaaaa tgatcaattt tttctcttct
    10741 ccaaaatctc tccaaaacgt ctcgcggtta tcagcagcca ggaagaagca agctgccgct
    10801 tgaagccgcg aattttacaa caaattgcca gacgagcggg aaaaaaaggc catttaaatg
    10861 actattctca tccgatccgg tcatatgcgg cattattgcg ccaggcaaga ggttactctg
    10921 taggcaaaca tgaagtacgt gagtaaaccc tgaacgtgac gtctgagaaa gcgtcgtctg
    10981 attttataaa aaacaacata aatagccgct ttgttgttct gagcgaacgt gtagcgtggt
    11041 taactgttct tccgccattt tttgtataga ctggggggct attctaaaaa tggcgtgaaa
    11101 aacctgatca gagatggctt cgactatctc agctaacatg cttaggctgg cgctgggatc
    11161 cgttacaagg aacgcctgaa acgtcttatc cgccagtaaa acctcttcta ccattttttc
    11221 aataggtatg tgggtatgtg gtggtggtat ttcaagctgt tttaagccac acatcgtcat
    11281 tgtttctaaa aatgcgtttt gctgagtact ttcggatata ttcgcatgct gtaaaatgcg
    11341 cgttgtcttt tcaatcccag actgaatttt cgctgccagg taggttgcct tttcttgcgt
    11401 tttccactca tctaaatttc cttttctcca ttcagaatat aaatacccct ctatgttgtc
    11461 taatggaacc gataatgtcg gcgcgccagc agggttgaga cataatgtcg aagggagggg
    11521 gtaatctacg atttcgctat atcttctatt aatcatggcc gtcatttgtg gatgcggttt
    11581 taaaatatcg gggcgatctt ttattaaaaa ataagcattc cccatgactt cacagctaaa
    11641 ggtatcggta ttttgagtga tacgtaacaa ttcgttttct tcgttttgat ccatgatgcg
    11701 aagaataatc gtgtcatcat tttcatgagg attatgaacc tgaaatctat ctctttgcga
    11761 tgcgcaggct aactctttta actcaaaaaa aatctctgta aatcgctctc gtgtgggggt
    11821 gcgatcggca aacaacatct catgtagaca acggtccgct tttgctttgc cagtagaaaa
    11881 aaagaagtct ttaatttttt tccataaaac tttccaccat gcttctttcg tattccttgg
    11941 ggagttggta aggatttcac tttttaaaaa accattccct atagtaatcg gcatattaat
    12001 ctcacttata ctggagtaaa aatgactaca taattgatta aatcaactct ttttatctca
    12061 actgcgggcg catcggatgt aatataattt ttaaaagaga ctggcaatca gtataaaacc
    12121 tgagagcttc gcgtataaac gcattactgt ctgcgatagc gtcgctacag gtaaaaataa
    12181 aagaaggcct accgcggatg atgttgtaga tttgcaatac tggcggcaac ttctttcatg
    12241 cgttttttat gccggaggca tgaagtttac ccttgaataa acttcatgcc tggatgcgtg
    12301 tggatttgtt agcgttgcgc aattaatcgc ttatatcact caccttctta ttcaataagc
    12361 gggaagcccg ccagtaaatc aacagcatga gtcccatcac aatggtcagc gtaatgctgg
    12421 tagccgcgcc aaacggccag tcgcgaatat tcaggaactg taccttaatg acgttaccaa
    12481 tcagcaggtt tttcgcgcca cccattaaat cggagacgta gaacaggccc attgccggta
    12541 gcatcacgag caggcaaccg gcgacaatgc ccggcatggt taatggaata atgatgcgga
    12601 tgaacgtttg cattttactg gcaccgagat cgcgagcggc ctccagtagc ggtttgtcga
    12661 gcttctcaat gctggagtag agcggcatga ccataaacgg cagcaaaatg taaaccaggc
    12721 cgataataac ggcgctcggg gtgaacatga tgcgaatcgg cgtatcaatc acgcccagcc
    12781 acagcaggaa ttcattgaga taacctttag tgctcaggaa tatttttagc ccatagatgc
    12841 ggatcagtga gttggtccag aaaggaacaa tcagcaaaaa cagcaataac ggacgtatct
    12901 tttccggtaa cttcgccaga aaccaggcga aaggatagcc cagcaccagg caggagaggg
    12961 tggcgatcag cgccatattc agagagtgca ggagcacttc aaaatagagc ggatcgagca
    13021 ggcgtgcgta gttatccagc gtaaagacca tcttgacgaa actggcgtcg tcacgggtca
    13081 gaaagctggt gccaatgatc atcaggttgg gcagaaaaac aaacaacaca agccaaccga
    13141 cgatagtgac aatcactaca ttctggaatt tacttgtgtt cttcatcagc cagtacgacc
    13201 tcccagcttt ctacccaact aatggccatt ttttggtcaa gtgaatggtc gaagtcagga
    13261 tcgtcttcgt tgaagaattc gctgaccatc accattttgc cattttccag ttcaaccacc
    13321 gactccagcg tcataccttt gtaattgcgc tcgcgcacgt agccgataag cccttcgatg
    13381 tggttatcat cgttgatctc ttcgacgcgt agatcttccg gtcgcagcag gacgttcagt
    13441 ttttggccca gttcgacagc gaaattgacg tatatattgc actcccgacc ttctacgctg
    13501 gcgcggacgc gctgttcatc aagccgttca atgacggttg cgtcaaagcg gttaatttcg
    13561 ccgataaaac cggcgacaaa caggcttttt ggctcttcat agatttcacg cggcgtgccg
    13621 tcttgctcaa tcacgccatt acgcattacc acgatacgat cggacatggt gagcgcttct
    13681 tcctgatcgt gagtgacaaa aacaaacgtg ataccgagtt tacgctgtaa tgctttaagc
    13741 tcgttctgca tttgtttgcg caatttatag tccagcgcgg agagcgattc gtccagtaat
    13801 aacaggcgag gtttattcac caccgcgcga gcgatagcca cacgctgctg ctgtccgccg
    13861 gaaagctggt gcggtttacg ttgtgcaaac tcttcaagct gcaccatacg cagcgcatcg
    13921 gtcacgcgag gcgctatctc ggcggctggt gttttttgca ttcgtaagcc aaacgcgaca
    13981 ttttcaaaca ccgtcatatg cggaaataaa gcgtagcttt gaaatacggt atttacataa
    14041 cgattttcgg cgggaacgtg ggtgatatcc tggttatcca acatgatatg cccggcatca
    14101 acggtttcca ggccggcaat caggcgaaga acggttgttt taccgcagcc ggaagggcca
    14161 agcagcgtga ggaattcgcc attgttaatg gtcaaatcca gctgtgaaat gacctctttg
    14221 ccatcgaaac ttttgctaat tcccgacaaa agcaccagcg gtgaaagcga acgcggttgt
    14281 ttattcaatt tcttactctg tcccatgtaa acgcaacgga tggctgaccg ctgcggggtt
    14341 tgtggttaac caccttaatc actcttaatg agggcggtca ttctacggca aaccaccgtg
    14401 atcgccaatc cttgttgcga attactgact tagctttata gtcagaaagc gtgtcaaagt
    14461 gaaatattct tgtttgcagg gataaaagtg acctgacgca atatttgtct tttcttgctt
    14521 attaataatg ttgtcacgaa aagtgagggt gactgcatgg ataaactact tgagcgtttt
    14581 ttacactacg tatcgctgga tacccaatca aagtcgggtg ttcggcaggt tcccagcact
    14641 gaggggcagt ggaagttact acgtttgctc aaacagcagc tcgaagagat ggggctggtt
    14701 aacattacat taagtgaaaa agggacgttg atggcgacgc tcccggccaa tgttgagggg
    14761 gatattcccg ccattggttt tatctcccat gtggatacct ctccggattt cagcggtaaa
    14821 aacgttaacc cgcagattgt cgagaattat cgcggcggcg atatagcatt agggattggc
    14881 gatgaggtgt tgtcacccgt gatgttcccg gtactgcatc aattactggg acagacgctg
    14941 attactaccg atggtaagac attgctgggc gcggacgata aagccggtgt tgcggagatc
    15001 atgaccgcgc tggcggtgct gaaaggtaat cctattcccc acggcgaaat taaagtggcg
    15061 tttacgcctg acgaagaggt agggaaaggc gcgaagcact tcgatgttga ggaatttggc
    15121 gcgcagtggg cctatacggt cgacggcggc ggcgtgggag aactggagtt tgaaaacttc
    15181 aatgccgcct cggtgaatat caaaatcgtc ggcaataacg tgcatcctgg tacggcgaaa
    15241 ggcgtgatgg tcaatgcgct gtcgttggcg gcgaggattc acgcggaagt gccggcggat
    15301 gaagcgcctg aaaccactga aggttacgaa gggttttatc atctggccag catgaaaggc
    15361 accgttgacc gggccgaaat gcactacatc attcgcgatt tcgaccgtaa gcagtttgaa
    15421 gcgcgtaaac gcaaaatgat ggagattgcc aaaaaagtcg gcaaggggct gcatccggac
    15481 tgctatatcg aactggtgat tgaagacagt tattacaata tgcgcgaaaa agtggttgag
    15541 catccgcata ttctcgatat cgcccagcag gccatgcgcg actgtcatat tacgccggag
    15601 atgaaaccaa ttcgcggcgg tacagacggg gcgcaactgt cgtttatggg cctgccgtgt
    15661 cctaatctct ttaccggcgg atataactat catggtaaac atgagtttgt gacgctggag
    15721 gggatggaaa aagcggtaca ggtgattgta cgtatcgcgg agctgacggg taagcgcggc
    15781 cagtagcgaa tgttacacat tgtggtgaag cgttttatta tttatggcgg gatattttcc
    15841 gccataaatt tttctgcctg gagcgccgaa tatacgcctt cctggtccca gcgccagcaa
    15901 caatctgcag catgttttat gaccggcgat gaaacctgca tgacgtttat tgatgatgcg
    15961 gtgaggctgg cctcgcggca atatggcaaa cgctcaatac agcttgttcg tagcctgcta
    16021 ttacaaagcg atatttatca atggctgggt aaaccggagt taacgccgca aatgctgctg
    16081 cgagcgcggg caatcatgaa aacatttccg gcgggcactt atccgggcga tcgggccgat
    16141 atgtttgaac acctggcggc cttttatgtt tacggtgacg atcgccatat agagtattca
    16201 ccgacagagc agtggcgata cgagatcaag gttgattacc gtcagcggat agcctggcaa
    16261 gagcaggcat taacgtggcg tcttaaagac aaaaagacat cgacggaagc gttggtttat
    16321 accttaaaca ggatgcgcga cgcttattct gatgcgctgg aagagcggga tgtcgaatgt
    16381 gatagtgcgc gtaaagccta ttatttggcg aagatagacg cagcggagcg gcagtggctg
    16441 agcgttattt tacgggataa aacctgggat aatcgtgagc gcgtcgcctc ttttttgcag
    16501 cagaaagcgg atattgctta taatgcaggg catattagcg aggcgattaa tgcgctaagt
    16561 caggcgctaa aaattgagca aacgctttat ggcaccgaat tcggcgaaat gacggttgac
    16621 agcaataatc ttgctggctt ttatgcacag ggccatcatt ataaggaagc gaaagatctc
    16681 taccttaaac ttatcgcgta ttaccagagc cgtttaacgc caatggcgac ggtaatatca
    16741 cgattacgct tttatttgcc cgaaaacatc gacctggaca gtacctcccc ctatctccca
    16801 ttgctggaag aatataaacg tcggcagtcc gacgtatcca tggtgttgta tggtatttcg
    16861 ctgctttata agaataatca acagcttgaa caagcaaaag actttgcgga acgcgccttt
    16921 acgcttgatg ccgtagctta tccagcaaag atgcagtatg aacgattaca gcaactggct
    16981 aatattgccg aaggtcttgg agataacgcg caggcgcggc gctatcggca aatgtcattt
    17041 cgccatcgaa tggcccactc gatttatccg ggcgatccgc aatataacga tttcgccaaa
    17101 cctggcggcg atcgttgtgg atagtttgcg tcagcccggc ggtcgccggg cattgcgatg
    17161 ttcttatcct tcgaaaaacc agtatccgct attcaccagc gccgccagca tcgcgaggaa
    17221 ggaagggtct tccagcgcat cgccgaagtt ttcagcggtc agtacaatat gactggtgag
    17281 cgcttccaga gcggggcgat gcggagagtc tattttttcg ccattcgcat agacttcatc
    17341 gccgatacgc aatacgcgaa gcccgccgag acgtactaat gcctcgcctt gctttaaggc
    17401 atcgtaaatt tcgtctggct gatacggcgg ctccggcggc gcaatatcca gttcgtggcg
    17461 tgactgagag ataaactcgc caagccactg ttggaaatgc gcgggctgat tgatcaaatc
    17521 gagcatcata ttacgcagtt tatccatctc ctgcggcagg atatccgccg gatgtttgcg
    17581 ggacggcata tccggatcgc tgtagtatgt gttgcccaga tcccgttgca ggacgtaatc
    17641 ggcaaaaccg ctgatcagct cacggctatt gggcgcgcga aaaccgactg aatagttcat
    17701 ggcgttttcc agcgcatacc cttcatgcgg gaatccaggc ggaatataca gaatgtcgcc
    17761 cggctccagc tcttcgtcaa taatggcctc gaacggatcg acttgtaaca ggtcgggatg
    17821 cgggcagtgc tgacgcattt gcagcttttc gcccacgcgc cagcgacggc gaccggttcc
    17881 ctggataata aacacatcat actgatccag atgcgggcca acgccgccac cgggaacgga
    17941 aaaggagatc atcagatcgt cgatacgcca gtccggcaga gcgcggaacg ggcgcatcag
    18001 cgcggcggtg ggttcatgcc agtggtttac cgcctgtacc agcagcgacc agttgctctc
    18061 acccagatga tcgtagcttt cgaaagggcc atggctgacc tgccatttgc catcctgatg
    18121 gctaacgaga cggctgtcga tttcgctttc catcgccagc cccgccagct catccggcga
    18181 gagcggatca ataaagttgg taaacccacg ttttaagacc accgggcgtt tttgccagtg
    18241 gcgttcaaga aagtcgggcc agttaagagt taattggtat tccatgttaa gtatccgcag
    18301 gctggtatct gacaccgatt ataacggatg cttaacgaga tgcgtggaag aacgcacaga
    18361 aatgtttatt cctctttctg tgtgggatgc tgtcggccaa aaacgacctc catacgggcg
    18421 ccaccgagca gactgtcgct ggcaatgatc tgcccggcgt attgttccgt aatctcgcgc
    18481 gcgacagcca gccccacgcc ttgtcctggt cgtagggtat cggcgcgctg accgcgatca
    18541 aacaccaggg aacgtttgct gtggggtatg cctgggccgt catcttcgac gaaaatatgc
    18601 aaatgatcgt cggtctggcg agccgaaatc tcgacaaact ccagacaata tttacaagcg
    18661 ttgtccagta cgttgcccat tacttcgaca aagtcgtttt gctcgccgac aaaactgatc
    18721 tctggtgaaa tatccatact gatattcacc cctttacgct gataaacttt attgagcgcg
    18781 gagatcaggt tatctaacaa cggcgcgacg ggatgcagtt cgcggcttaa caacacgccg
    18841 ctaccgcgca tactggcgcg atgcagataa tagccgatct gctgggaaat ccgactgatc
    18901 tgttccagca tcaccggttc agctttgctg acgctcatct tttcgttgcg taaagagcgt
    18961 aacgtactct gcaaaaccgc gagcggcgtt tttaaactgt gcgtcaggtc ggttagggtc
    19021 gtgcggtatt tgttataacg ttcgcgctcg cttttgagca gttgattaag gttgcgcaca
    19081 aggctggtca gctcacgcgt cgtctccgga ttgagcattt cgcggtgatg atcttcaagt
    19141 tcgcggactt cccgcgccag cgcctcgata gggcgtaagc tccaccaggc ggcgatccac
    19201 agtaaaggaa tgactaacag taaattggcg gccagcacgt atacgaacca gctccacacc
    19261 atataggagc gttttagctc tatcggaatg gtatcgacca ccacgatggt taactgcggc
    19321 atccgcgtcg tggcaggata aatatttacc gctaccgagt gggtcatctc cgcatcatcg
    19381 tcatcttcac gtacttcttt gagtttttcc tgcgcggaat ggtcctcgct caacagcgtg
    19441 ctggtggcgt ctacgttggt ttcaatttca tggaagccgt tcgtttttaa ccattccggt
    19501 tgaatgcttt taatcagcca ggggatgttg cgctgcgtcc ataataattt gcccgtttca
    19561 tcgtaaatca gcgtcatggt cgggctttgc atgtccagat tttcaggcag ctcaacgctg
    19621 attttattat tttcccattt ggcgagggta taaaacaggt tgctttcgcc gcgcagcaga
    19681 cgaaacgtgg ttttatcaaa acttacgcta tagccgacca gcgccactat gccatatgcc
    19741 agagaaagca ccagcacgac gccggctgtc gccagcaaaa aacgaacccg cagcgacagc
    19801 ggcagaaaat ggcgagcaaa tttattcatt agcgcaattc aaaaagatat ccttgtccgc
    19861 gtacggtggt aatgacatcg tgcggatact gggcctgtat ttttttccgc agacgcccca
    19921 tgagaacatc aatggtatga ctttcccgca gttccgcatc cggatacagc tgaagcatca
    19981 gagaatcttt gctgaccact ttaccgttgt tacggataag cgtttccata atggtgtatt
    20041 cgaacgccgt gagtttgatg acctcttcat tgacggataa ttcccggcgt gagagatcca
    20101 cctggaaagg cgagatgttg atcacctggg aggccagacc gctattacgg cgcattaacg
    20161 cctgcatacg cgccattacc tcttcgatgt ggaatggctt cgtcacgtag tcatcggccc
    20221 cggagctgag aacctcgact ttatcctgcc agccttcgcg cgcggttaac accagaaccg
    20281 gcagtgaaac atcactgctg cgccagcggc gtattaagga aaggccgtct tcatccggca
    20341 gacctaaatc gacaatagcg atatccggaa ggtgttcatt aaggtagtaa tcagcttccc
    20401 tggcatcttc tgcggcatcg acctggtgac ctgaatcctg gagctgaacc ttcaggtggt
    20461 ggcgtaataa tgcattatcc tctacaacca gtacgcgcat catctcttct cccttgtgtt
    20521 aacaataaga acagtctagc gttgattatg gtgctttggg gataaacagt taataaacca
    20581 gacaaatagt caccctcttt ctgaagaaaa gagggtgagg cacacattat ttaagttcgt
    20641 cgaccagatt cacagcgcga ccgatataat ttgccggcgt catggcttta aggcgcgttt
    20701 tttctgcttc cggcagggcc agactatcaa taagctgttt cattccttcg gcatcgacac
    20761 gcttgccacg ggtcaactct ttcagttttt catatggttt ttcaatgcca tagcggcgca
    20821 tgacggtctg gatcggttcg gctaatactt cccagttgtg atccagttcg tcaagcagat
    20881 gatcgcggtt cacttccagc ttgctgacgc ccttcagggt cgactgataa gcgataagcg
    20941 catagccgat gccgacaccc aggttacgca ggacggttga gtcggtcaga tcgcgctgcc
    21001 agcgggaaac cggcagtttg tttgccagat ggtgcaacac tgcattagac agaccgaggt
    21061 tgccttctga gttttcaaag tcaatggggt taactttatg cggcatggta gaagaaccga
    21121 tctctccggc gatggttttc tgtttgaaat ggttcaacgc aatatagccc cagacatcgc
    21181 gatcgaaatc gatcaggatg gtgttaaagc gcgcgataca gtcaaacagt tccgcaatat
    21241 aatcatgcgg ttcaatctgg gtggtgtaag ggttccactg gatgcccagc gaggtgacga
    21301 actcttcgct gaactgatgc cagtcaactt ccggataggc ggcgatatgc gcgttatagt
    21361 tgcctacggc gccgttaatt ttaccgagga tctccacctg attgagctgg cggaactgac
    21421 gctccatccg atacgccacg ttcgccatct ctttacccag agtggaaggt gttgccggct
    21481 ggccgtgggt gcgggagagc agaggaatat cgcgatactg cgtggcgaga tctttaaccg
    21541 cgttaatcac ctgacgccag taaggcagga tcacttcatc gcgcgcagtt ttgagcatta
    21601 acgcgtgcga caggttgtta atatcctcag aggtgcaggc aaagtggata aattcggaaa
    21661 cgtcatgtag cgccgggatc gcggcggctt tttctttcag aaaatactca accgctttca
    21721 catcgtgatt cgtggtgcgc tcaatggttt taatgcgcgc ggcatcttct tcattgaagt
    21781 ttgccacaag cgtatccagg taaccgtttg cgtcggcagc aaaagcagga acttccttga
    21841 tcgctgcgtg cgcggctaat ttctgcagcc aacgtacttc gacttgtaca cgaaatttca
    21901 gcaaaccgta ttcgctaaaa attccgcgca gcgcgctgac tttatcgccg tagcgtccat
    21961 cgacagggga aacggcggtc agtgaggata attccataga tcataactcc ggggttaaat
    22021 aagcaagaat ttgttttgcc tgagtcgtca ggcgatgacg agaaaacata agctgtaggc
    22081 gaccaccgcc tacctgatgc cagagcacgg ctgcacggat gcctgccagt agcgaggcgc
    22141 ggactttggc ctgcacctgc ggactttgca gaacggccgg ggagcccgtc acctgaatgc
    22201 gcgggcccaa tgggctaatc acatccacgt agatgcccgc catggcgctc attaacgtgt
    22261 ctgactgtaa atcaaaatgg tcaagctggc gctgcaggcc gttaatgcga tcgcctaacg
    22321 tattcaacgc gcctttggcg gatgacagct tgcgctccag caccatcagg ctaagcgtat
    22381 aacgcgtcag ttcggcgtta agtccttgtc ggctgctggc attcagcacg ccgagcagtg
    22441 tttccagacc aagacgcagg ttagcttcgc tgccgccgaa cacgcccaga gtagaactgg
    22501 gattcatatc aatgacactg ttgagtgaaa cgtgcaacgc gtcggcatca cagtgtccct
    22561 ggtgcgccag ttgttgcacc aggcgtgccg actggcaaat gccagacagc gcgagggtga
    22621 tgtcataata attctttgcc acaatcactg cttccttgta tcaaataaaa tacacttcat
    22681 cttttaagcc gctttgaggt gacttgaatg gtgttgtgta ttgaataatc agaccgtcag
    22741 cggcagtcgc tgctcgataa tgccgccgcc caggcagact tctccgctgt aaaagacagc
    22801 ggactggccc ggcgtaacgg cggcaaccgg ctcgtcaaaa atgacctcga tacgatcgtc
    22861 atccagcgcg ttaatcgtgc acggaatatc ggtctggcgg tagcgggttt ttaccgtaca
    22921 gcgcagggtg ccggtgaacg gttcgcgatc gacccaatgt agctgctggg cgatgaggcc
    22981 taccgacatc aggcgtgggt gctcatgccc ctgggcgaca attaacacat tgttttcaac
    23041 gtctttatcc accacatacc aggggtcttc gctaccgtct ttggtgccgc caattcccag
    23101 ccctttacgc tgaccgagcg tatgatacat cagaccctga tgctcgccga tttcatcgcc
    23161 gtcaacagta atgattttcc ccggctgcgc aggcagatag cgccctaaaa agtcgcggaa
    23221 tttgcgctcg ccgataaagc agataccggt agaatctttt ttcttggcgg ttaccagccc
    23281 caaatcttcg gcgattttac gcacctgcgg tttttccagc tcgccaaccg ggaacagact
    23341 ttgcgcaatc tgctcatggc caagcgtata gaggaagtag ctctgatctt tgttaccgtc
    23401 gagcccgcgc aacaaccggc ttttgccgtt tacatccgcg cggcgaacgt agtgaccggt
    23461 ggcgatatag tcggcgccta aatcttctgc ggcaaattca aggaaggctt taaatttgat
    23521 ctctttattg cacagaatat ccggattcgg cgtacggccc gctttgtact cttcaaggaa
    23581 cagttcaaag acgttatccc aatattctgc ggcaaaatta acggtatgca gttcaatgcc
    23641 aagcttgtcg cacacggcct gcgcgtcagc cagatcggct gccgcggtgc agtattcctc
    23701 accatcgtcc tcttcccagt tcttcatgaa caggccttct acctgataac cctgttgttg
    23761 caacagccag gcggaaacgg aggaatcgac accgccggac atgccgacga tcactttttt
    23821 tgggctttct gacattggaa tactcgcgac attgaacttc aaggcggcgt attctatcac
    23881 gcagcccttt acttgacacc ctctgtaaac ggccagttaa attcgcccac tatagataag
    23941 gggtaacgtt gtcccgtttg ataactgcga atgctttcag ccaccagcgg agaacgtaaa
    24001 ttcggcgcgt tcagaatctc gtcggcgctc acccaacggc agcaatcgat gtcattgtca
    24061 tggggggcgg tcgcgcaaat atgatcaagc ttgatagcga ataaaaagcg caggaacggg
    24121 gttttatccg gcgcaatcca ctgatgcata cggataaaat actgtggttg cgccgtgatg
    24181 ccagtctctt cccacagttc tcgcgcggcg gcctgcgcca gcgtttcatc tgcctccagg
    24241 tgtccggcag gttgattcca taacgattta ccgttgatgg tctcttccac caccagaaat
    24301 ttatcttcgg catgtacgat gcaggcaacg gtcacgtgcg gcttgaacat aggcatcctt
    24361 attaaagcgg tttatcaatg tggtcataga tcgcgtcaag ctgtttcaga cgctcgttat
    24421 aagcttttgt caggcaggtg acgtcggcct tgcactgctg acgctgttta agccagctct
    24481 gctgggcgtc ctgcagcgcg ccgcgactgc ccatcgcgaa caaccctttc agaaactgat
    24541 atttggtgtg catttccacg tctttatcat tcagcgtcag gtgcgcgcag atagcctttt
    24601 catccgcagc ctgcgctttc tggcagtcga agctggccgc attaacggat aacggtgtta
    24661 ataaagcaaa agcaatgaga agccgtttca tctgtctttc tcctgtgcga tctcgcacca
    24721 ctgtccatta tcgaggccgt tgagcgtgta gtcgcccatg ctgtaacgaa ttaatcgtag
    24781 agtgggatga ccgacatgcg ctgtcatgcg tcttacctgg tggttgcggc cttcatataa
    24841 ggtgactttt agccaactgg tgggaatatt cttccgttcg cgaatcggcg gggtgcgcgg
    24901 ccacagccag tcaggctccg cgacaatctc aataccggcg ggcagggtag ggccatcgtt
    24961 gagcgtgacg ccagtacgaa gcgcctgcag cgctgcatta tccgggatgc cttctacctg
    25021 aacatagtaa atcttgccgg tgcgtttgcc cggttgcgtg aggcgcgcct gcagcgcgcc
    25081 gtcattagtc agcaccaaaa gcccttcgct gtcgcggtcc aggcggcctg cggcataaac
    25141 gccttgcaca ggaataaaat cttttaacgt gcggcgacct gcttcatccg tgaactgcgg
    25201 caacacatcg taaggtttat tgaacaaaac cacgcgtttt ggctggtttt ctttccgtga
    25261 tttagatgct tgtcgtgagc tgaatcgctt aacgtagtga tttctaaaag aagttttttg
    25321 catggtgttt tcagaactta ttaattgccg cattatagcg caataatgag tgtctttcat
    25381 ggcggcaaac aatagggtag tattgacatg ctcattacaa aacattaaca aaaaattgct
    25441 ctaacgcagt cgtgcagcag gacgccattg cacatgcagc gcgatgacag acgagcaaac
    25501 cagaagcgct cgaaggagag gtgaatggaa agcaaagtag ttgttccggt ggaaggtaag
    25561 aagatcaccc tgcaaaacgg caaactcaac gttcctgaga atccgattat cccgtttatt
    25621 gaaggcgatg gtatcggtgt tgatgtcact ccagccatgc ttaaagtggt cgatgccgcc
    25681 gtcgagaaag cctataaagg cgagcgtaaa atttcctgga tggaaattta caccggagaa
    25741 aaatccacac aggtttacgg ccaggatgtc tggcttcccg ctgaaaccct tgatttaatt
    25801 cgtgactacc gcgtagcgat taaaggtcca ttgaccacgc cggttggcgg cggtatccgc
    25861 tctctgaacg ttgccctgcg tcaggagctt gacctgtacg tttgtctgcg tcccgttcgt
    25921 tactatcagg gcacgccaag tccggtgaaa catccggagc tgaccgatat ggtcatcttc
    25981 cgtgaaaact ctgaagacat ctacgccgga attgaatgga aagctgactc tgcagacgct
    26041 gagaaagtga tcaagttcct gcgcgaagag atgggcgtga agaaaattcg cttcccggag
    26101 cactgcggta tcggtatcaa accgtgttct gaagaaggca ctaaacgtct ggttcgcgcg
    26161 gcgattgaat acgctattac caacgatcgc gattccgtca cgctggtaca taaaggcaat
    26221 atcatgaagt tcaccgaagg cgcgtttaaa gactggggct accagttggc gcgcgacgag
    26281 ttcggcggtg agcttattga cggcggtccg tggctgaaaa ttaagaaccc gaacacgggt
    26341 aaagagatcg tggttaaaga cgttatcgcc gatgcgttcc tgcaacaaat cctgttgcgt
    26401 ccggcggaat acgacgttat cgcctgtatg aacctgaacg gtgactatat ttccgatgcc
    26461 ctggcggctc aggttggcgg tatcggtatt gcaccgggtg cgaatatcgg cgacgaatgc
    26521 gcgttgtttg aagcgactca cgggactgcg ccgaaatatg cgggccagga taaagtcaac
    26581 ccaggctcca ttattctgtc tgcggagatg atgctgcgcc acatgcagtg gttcgaagcg
    26641 gcggatctga ttgttaaagg tatggaaggc gcgattgccg cgaagaccgt gacctatgac
    26701 tttgaacgcc tgatggacgg cgctaagctg ctgaaatgta gtgagtttgg cgacgcgatt
    26761 atcgcaaata tgtaatatcg ataattgtta aaaacaaaaa cgggggctta acgtcccc
//
LOCUS       DAJVSD010000033        26758 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.033, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000033 DAJVSD010000000
VERSION     DAJVSD010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 26758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26758
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.033"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            211..441
                     /gene="chaB"
                     /locus_tag="OQP62_001174"
     CDS             211..441
                     /gene="chaB"
                     /locus_tag="OQP62_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative cation transport regulator ChaB"
                     /protein_id="HCS1720775.1"
                     /translation="MPYKAKSDLPDNVRNVLPAHAQDIYKEAFNSAWEQYKDKADRRD
                     DASREETAHKVAWAAVKNDYEKGEDDKWHKKK"
     gene            complement(521..874)
                     /locus_tag="OQP62_001175"
     CDS             complement(521..874)
                     /locus_tag="OQP62_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/DsrF/TusD sulfur relay family protein"
                     /protein_id="HCS1720776.1"
                     /translation="MQNIVIIANGAAYGSESLFNSLRLAIALREQESHLDLRLFLMSD
                     AVTAGLRGQKPAEGYNIQQMLEILTAQNVPVKLCKTCADGRGITPLPLIDGVEIGTLV
                     ELAQWTLAADKVLTF"
     gene            1051..2475
                     /locus_tag="OQP62_001176"
     CDS             1051..2475
                     /locus_tag="OQP62_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460724.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchO/YchP family invasin"
                     /protein_id="HCS1720777.1"
                     /translation="MPFLLSFVVEVADTLSRIVFRSFSLSLLLLAASGTIRAQAQDPF
                     DQNRLPDLGMMPESHEGEKHFAEMAKAFSEASMKNNDLDTGEQARQFAFGQVRDVVSE
                     QVNQQLESWLSAWGSASVDINVDNEGHFNGSRGSWFIPLQDKQRYLTWSQLGLTQQTD
                     GLVSNVGIGQRWAQDGWLLGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSANYYQPFA
                     DWQTHTATLEQRMARGYDINAQVRLPFYQHINTSVSLEQYFGDSVDLFDSGTGYHNPV
                     ALKLGLNYTPVPLLTMTAQHKQGESGVSQNNLGLTLNYRFGVPLKKQLAASEVAQSQS
                     LRGSRYDTPQRNSLPTMEYRQRKTLTVFLATPPWDLTPGETVALKLQVRSVHGIRHLS
                     WQGDTQALSLTAGTDTRSTEGWTIIMPAWDHREGAANRWRLSVVVEDEKGQRVSSNEI
                     TLALTEPFITMPDDNPHWQPFQEQ"
     gene            complement(2476..3126)
                     /gene="narL"
                     /locus_tag="OQP62_001177"
     CDS             complement(2476..3126)
                     /gene="narL"
                     /locus_tag="OQP62_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator NarL"
                     /protein_id="HCS1720778.1"
                     /translation="MNNQEPATILLIDDHPMLRTGVKQLVSMAPDISVVGEASNGEQG
                     IDLAESLDPDLILLDLNMPGMNGLETLDKLREKALSGRIVVFSVSNHEEDVVTALKRG
                     ADGYLLKDIEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTDRDVTQLTPRE
                     RDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWMHQERIF"
     gene            complement(3119..4915)
                     /gene="narX"
                     /locus_tag="OQP62_001178"
     CDS             complement(3119..4915)
                     /gene="narX"
                     /locus_tag="OQP62_001178"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarX"
                     /protein_id="HCS1720779.1"
                     /translation="MFKRCFSPLTLVNQLALIVMLSTAIGVAGMAVSGWLVQGVQGSA
                     HAINKAGSLRMQSYRLLAAVPLDAKDQKLLDEMEQTAFSPELTRAAERDGQQKQLKAL
                     QDYWHNELSPGLQHAQNAHAVAEDITRFVAGLDRLVTSFDHTTELRIERVVLVHRVMA
                     IFMALLLVFTIIWLRVRLLQPWKQLLSMARAVSQRDFTQRANISGRNEMAALGSALNN
                     MSEELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSQAPLCERLSPVLNGLQ
                     NLTQLHDIELRVYDLEDEDNHQEFTCQSDISCDDKGCHLCPRSALPMINGGTTLKWRL
                     TDSHTQYGILLATLPYGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQRLIVMEERA
                     TIARELHDSIAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNCSWAQLRELLT
                     TFRLQLTEPGLRPALEASCQEFSARFGFTVKLDYQLPPRLVPSHQAIHLLQIAREAPS
                     NALKHSHADDVVVTVTQCGKQVKLKVQDNGCGVPENAERSNHYGMIIMRDRAQSLRGD
                     CQVRRRETGGTEVTVTFIPETNFTETQGDTHE"
     gene            5255..6652
                     /gene="narK"
                     /locus_tag="OQP62_001179"
     CDS             5255..6652
                     /gene="narK"
                     /locus_tag="OQP62_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate transporter NarK"
                     /protein_id="HCS1720780.1"
                     /translation="MSHSSAPERATGAVITEWRPEDPAFWQQRGHRVASRNLWISVPC
                     LLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPLFGGR
                     RWTAFSTGILIVPCVWLGFAVQDTSTPFSTFIIISLLCGFAGANFASSMANISFFFPK
                     QKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAAFGSHGVEQPDGSQLYLANAAWI
                     WVPFLAIFTLAAWFGMNELATSKASLKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAG
                     FAMLSKTQFPDVQILHYAFFGPFIGALARSAGGAISDRLGGTRVTLINFVLMAIFSGL
                     LFLTLPTGGVGGSFIAFYGVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSD
                     ERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACV
                     VITWAVYGRHSKNKK"
     gene            7040..10783
                     /locus_tag="OQP62_001180"
     CDS             7040..10783
                     /locus_tag="OQP62_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit alpha"
                     /protein_id="HCS1720781.1"
                     /translation="MSKFLDRFRYFKQKGETFADGHGQLLETNRDWEDGYRQRWQHDK
                     IVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDMPNHEPRGCPRGASYSWY
                     LYSANRLKYPLMRKRLMKMWREAKKLHRDPVEAWASIIEDADKAKSFKQARGRGGFVR
                     SSWQEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFY
                     DWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGT
                     KTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPRQYFTDYVRRY
                     TDMPMLVMLEERDGYYAAGRMLRAADLVDSLGQENNPEWKTVAINSNGEMVAPNGSIG
                     FRWGEKGKWNLEQRDGTTGAETELQLSLLGSQDEIADVGFPYFGGEGSEYFNHVALDN
                     VLLHKLPAKRLQLADGSSALVTTVYDLTMANYGLERGLNDENCAASYDDTKAYTPAWA
                     EQITGVPRAQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLVFCG
                     CVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETV
                     TAEELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLGTNPLYIAREAEKAGMTPVD
                     YTVKSLKDGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTEHGIQ
                     GLDLGKQGGVKPEEVEWRDNGLDGKLDLVVTLDFRLSSTCLCSDIVLPTATWYEKDDM
                     NTSDMHPFIHPLSAAVDPAWESKSDWEIYKGIAKKFSEVCVGHLGKETDVVTLPIQHD
                     SAAELAQPLDVKDWKKGECDLIPGKTAPHIMTVERDYPATYERFTSIGPLMEKIGNGG
                     KGIAWNTQSEMDLLRKLNYTKADGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAW
                     AALSEFTGRDHTHLATNKEEEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNV
                     HELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKAVMGRKSNGNPEKALN
                     FLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSETDAKELGIEDNDWIEVFNSNGALT
                     ARAVVSQRVPAGMTMMYHAQERIVNLPGSEITQQRGGIHNSVTRITPKPTHMIGGYAQ
                     LAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK"
     gene            10780..12315
                     /gene="narH"
                     /locus_tag="OQP62_001181"
     CDS             10780..12315
                     /gene="narH"
                     /locus_tag="OQP62_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit beta"
                     /protein_id="HCS1720782.1"
                     /translation="MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNV
                     ESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNRALLLGKIFANPHLPGIDDYYE
                     PFDYDYQNLHTAPESKHQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNF
                     ENMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRG
                     WRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDA
                     DAIESAASTENEKDLYQRQLDVFLDPNDPAVIEQALKDGVPQSVIDAAQQSPVYKMAM
                     DWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVDSLRIPVQYLANL
                     LTAGDTQPVLLALKRMLAMRHYKRAETVDGKVDTRALEEVGLSEAQAQEMYRYLAIAN
                     YEDRFVVPSSHRELARDAFPEKSGCGFTFGDGCHGSDTKFNLFNSRRIDAVDVTSKTE
                     PHA"
     gene            12312..13022
                     /gene="narJ"
                     /locus_tag="OQP62_001182"
     CDS             12312..13022
                     /gene="narJ"
                     /locus_tag="OQP62_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase molybdenum cofactor assembly
                     chaperone"
                     /protein_id="HCS1720783.1"
                     /translation="MIELVIVSRLLEYPDAALWQHQQELFDALASSENLDKEDAQTLG
                     VFLRDLTAQDMLDVQAAYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYEQHG
                     LQLDSRELPDHLPLYLEYLAQLPKSEALGGVQDIAPILALLSARLQQRDSRYAVLFDL
                     LLKLANTVIDSGKVAEKIANEARDDTPQALDAVWEEEQVKFFADQGCGESEISAHQRR
                     FAGAVAPQYLNITTGGQH"
     gene            13022..13699
                     /gene="narI"
                     /locus_tag="OQP62_001183"
     CDS             13022..13699
                     /gene="narI"
                     /locus_tag="OQP62_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="respiratory nitrate reductase subunit gamma"
                     /protein_id="HCS1720784.1"
                     /translation="MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLD
                     RKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYEAFLPVDVKQKMAMIAGGACGMLTL
                     VGGILLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLV
                     GWAQSVVTFHGGASAHLDGVAFIFRMHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKY
                     QIVRARH"
     gene            13941..15470
                     /locus_tag="OQP62_001184"
     CDS             13941..15470
                     /locus_tag="OQP62_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HCS1720785.1"
                     /translation="MRFSSIFKIIILNIFISKMAHAAVCEERYPPDSEECQYVQELEQ
                     KAEQGDEGAQFSLGSWYAEGRYVKPDYKLAIKWLEKAGKQGSDFSYFILGYHYNYGEN
                     FPLSRQKALEWYRKAAELGDSSTQEILGDAYMYGDGFPQNTQLALEWYRKAASPTNDA
                     GVVRGQGSASSAQFKLGVMYAHGQGVPQDYQQTAILMRKAAENMYYPAQLYLGVAYFY
                     GEGVPQDYRQAVYWLNEGIPGSYTPGHIPLNALYDKAHPADQVHSQTWYRKTAQRVMA
                     KVQFNFGVWYYNGYHLLKDHNLALEWYRRAAAQGLAEAQDAIGVMFMQGEAVSQDYQQ
                     ALAWYRKAARQGLPAAQTHLGIMSAFGRGVAQSDRQAIAWYRKAAKQDFAKAQYQLGV
                     AYSMGRGVPENSRNALKWYLKAAEQGFTPAQLALGEIYAHGRQGVPKDNKQAYIWYYM
                     ASIYTEKSKDDCSALIAERNRLKGTLTPDQLSETYAAFDLIRRKINQSKEAKKIARKK
                     Y"
     gene            complement(15573..15704)
                     /locus_tag="OQP62_001185"
     ncRNA           complement(15573..15704)
                     /ncRNA_class="other"
                     /locus_tag="OQP62_001185"
                     /product="RtT sRNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00391"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="rtT sRNA, processed from tyrT transcript; Derived
                     by automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00391"
     gene            complement(15755..15906)
                     /locus_tag="OQP62_001186"
     tRNA            complement(15755..15906)
                     /locus_tag="OQP62_001186"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(15870..15872),aa:Tyr,seq:gta)
     gene            complement(15935..16076)
                     /locus_tag="OQP62_001187"
     ncRNA           complement(15935..16076)
                     /ncRNA_class="other"
                     /locus_tag="OQP62_001187"
                     /product="RtT sRNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00391"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="rtT sRNA, processed from tyrT transcript; Derived
                     by automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00391"
     gene            complement(16247..17089)
                     /gene="purU"
                     /locus_tag="OQP62_001188"
     CDS             complement(16247..17089)
                     /gene="purU"
                     /locus_tag="OQP62_001188"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HCS1720786.1"
                     /translation="MQSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHR
                     TGRFFMRTELEGIFNDSTLLADLDSALPEGSVRELNPAGRRRVVILVTKEAHCLGDLL
                     MKANYGGLDVEIAAVIGNHETLRSLVERFEIPFELVSHEGLTREEHDTKMADAIDTHQ
                     PDYVVLAKYMRVLTPGFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAH
                     YVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNR
                     TIIL"
     gene            complement(17140..17598)
                     /locus_tag="OQP62_001189"
                     /pseudo
     CDS             complement(17140..17598)
                     /locus_tag="OQP62_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460714.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
     gene            17707..18612
                     /gene="rssA"
                     /locus_tag="OQP62_001190"
     CDS             17707..18612
                     /gene="rssA"
                     /locus_tag="OQP62_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase RssA"
                     /protein_id="HCS1720787.1"
                     /translation="MRKMKIGLALGSGAARGWSHIGVIKALKQTGIDIDIVAGCSIGS
                     LVGAAYACNKLSALEQWVCSFRYWDVLRLMDVSWGRGGLLRGKRVFNHYRDIMPVTDF
                     DHCSRRFGAVATNLSTGRELWFTEGDLHLAVRASCSMPGLMSPVEHNGYWLVDGAVVN
                     PVPVSLTRALGADIVIAVDLQHDAHLMQQDLLSVNVGNINEESDDALPWHKRLKERFS
                     SLTSRRGVSSSGAMEIMTTSIQVLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRAH
                     AAIAAGQLTVEKKMDELIPLVRTDV"
     gene            18703..19716
                     /gene="rssB"
                     /locus_tag="OQP62_001191"
     CDS             18703..19716
                     /gene="rssB"
                     /locus_tag="OQP62_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator RssB"
                     /protein_id="HCS1720788.1"
                     /translation="MTQPLVGKQILIVEDEPVFRSLLDSWFSSLGATTALAGDGVDAL
                     ELMGRFTPDLMICDIAMPRMNGLKLVENLRNRGDQTPILVISATENMADIAKALRLGV
                     EDVLLKPVKDLNRLRETVFACLYPNMFNSRVEEEERLFRDWDAMVSNPTAAAQLLQEL
                     QPPVQQVISHCRINYRQLVSADQPGLVLDIAPLSDNELAFYCLDVTRAGDNGVLAALL
                     LRALFNGLLQDQLGQQKHRLPELGALLKQVNHLLRQANLPGQFPLFVGYYHSELKNLI
                     LVSAGLNATLNTGAHQVQISSGVPLGTLGNAYLNQLSQRCDSWQCQIWGAGGRLRLML
                     SAE"
     gene            19919..20827
                     /gene="galU"
                     /locus_tag="OQP62_001192"
     CDS             19919..20827
                     /gene="galU"
                     /locus_tag="OQP62_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HCS1720789.1"
                     /translation="MAALNSKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQY
                     VVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHV
                     TIMQVRQGLAKGLGHAVLCAHPVVGNEPVAVILPDVILDEYESDLSQDNLAEMIRRFD
                     ETGNSQIMVEPVEDVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRY
                     VLSADIWALLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAF
                     VEYGIRHNSLGAEFKAWLEEEMGIKK"
     gene            complement(20959..21372)
                     /gene="hns"
                     /locus_tag="OQP62_001193"
     CDS             complement(20959..21372)
                     /gene="hns"
                     /locus_tag="OQP62_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator H-NS"
                     /protein_id="HCS1720790.1"
                     /translation="MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEE
                     SAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDE
                     NGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE"
     gene            22035..22652
                     /gene="tdk"
                     /locus_tag="OQP62_001194"
     CDS             22035..22652
                     /gene="tdk"
                     /locus_tag="OQP62_001194"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HCS1720791.1"
                     /translation="MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRF
                     GAGKVSSRIGLSSPAKLFNQNTSLFEEIRAESARQTIHCVLVDESQFLTRQQVYQLSE
                     VVDKLDIPVLCYGLRTDFRGELFVGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQD
                     GRPYNEGEQVVIGGNERYVSVCRKHYKDALEEGSLTAIQERHRHI"
     gene            complement(22849..25527)
                     /gene="adhE"
                     /locus_tag="OQP62_001195"
                     /gene_synonym="adhC"
     CDS             complement(22849..25527)
                     /gene="adhE"
                     /locus_tag="OQP62_001195"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HCS1720792.1"
                     /translation="MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAAD
                     ARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAE
                     PIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKEATNKAADIVLQAAIAA
                     GAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTP
                     VVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFASHGGYMLQG
                     QELKAVQNVILKNGALNAAIVGQPAYKIAELAGFSVPETTKILIGEVTVVDESEPFAH
                     EKLSPTLAMYRAKDFEEAVEKAEKLVAMGGIGHTSCLYTDQDNQPERVAYFGQMMKTA
                     RILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAEN
                     MLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGV
                     ETEVFFEVEADPTLSVVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHF
                     EELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDNATGQKYPLAD
                     YALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLL
                     KENLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLA
                     NALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKL
                     LAWLESIKAELGIPKSIREAGVQEADFLAHVDKLSEDAFDDQCTGANPRYPLISELKQ
                     ILLDTYYGRDFTEGEVAAKKDVVAAPKAEKKAKKSA"
     gene            26004..26651
                     /locus_tag="OQP62_001196"
     CDS             26004..26651
                     /locus_tag="OQP62_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchE family NAAT transporter"
                     /protein_id="HCS1720793.1"
                     /translation="MIQPLFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTATARN
                     KTNLTANLSVAIILWSSLFLGDGILQLFGISIDSFRIAGGILVVTIAMSMISGKLGED
                     KQNKQEKSETAIRESIGVVPLALPLMAGPGAISSTIVWGTRYHSIAHLLGFSVAIALF
                     ALCCWGVFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN"
BASE COUNT         6333 a         6607 c         7198 g         6620 t
ORIGIN      
        1 agcagaaatt tgtatttttt tagtggtttt ttacgtagtt ttacggcgta gacgattttt
       61 ttctttcaag gtcagtaaaa caagtatctt gttttaacag tgtttaaata acaaaaagtt
      121 aatttccgta aaaagcaaaa atcctcctcg actggcgtaa taacgcattg tttaccacac
      181 ttaatgtttt ccctgaagac ggaggcgctg atgccgtata aagccaaaag tgatttaccc
      241 gataatgtgc ggaatgttct tccagcccat gcccaggaca tttacaaaga agcgtttaat
      301 agcgcctggg agcaatataa agataaagcc gatcgtcgtg atgacgccag tcgcgaggaa
      361 accgcacaca aagtcgcttg ggcggcggtt aaaaacgatt atgaaaaagg cgaggatgat
      421 aaatggcata agaaaaaata aacgcggtat tactcacgcg ttagcctgat tttcttgccg
      481 gaagtctatc ctgacgcggg agcttttccc gcgtacagat tcaaaatgtc agcactttgt
      541 ccgccgccag cgtccattgc gccagctcga ccagcgttcc gatttccaca ccgtcaatca
      601 gcggcagggg agtgatacca cgtccgtccg cacaggtttt gcataatttt accggtacgt
      661 tttgcgcggt tagaatttcc agcatttgct gaatattgta gccttcggct ggtttttgac
      721 cgcgtaaccc tgcggttacg gcatctgaca tcaaaaacag gcgtaaatcg agatggcttt
      781 cctgctcgcg aagcgcaatg gccagacgca ggctattaaa taatgattcg ctgccgtagg
      841 cggcgccgtt agcgataatg acgatatttt gcatggataa cccttctcct tgagaaattt
      901 tgtcggcaat ggcgttatgt tacctcggga accgggtacc gccaaatgcg tggagaaaat
      961 cccgggacgc tctgcggaaa aaataaggat attcctggaa acacgagaaa aggctgcaaa
     1021 acctgtccgg acacgttatg gtttactctg atgccattcc tcttatcttt tgttgtagaa
     1081 gttgccgaca cgttgagccg tattgttttt cgttcattct cactctcgct tctcttgctg
     1141 gctgccagcg gtacgatccg tgcgcaggcg caagaccctt tcgatcaaaa ccgtctgccg
     1201 gatttaggca tgatgccgga atcccacgaa ggggaaaagc attttgccga gatggccaaa
     1261 gcgtttagcg aagccagcat gaaaaataac gatctggata ccggtgaaca ggcgcggcaa
     1321 ttcgctttcg gacaggtacg cgatgtggtc agcgagcagg ttaaccagca gcttgaaagc
     1381 tggctatcag cctggggcag cgccagcgtg gatattaacg tcgataacga aggtcatttt
     1441 aacggcagtc gcggaagctg gtttatccct ttacaggata aacagcgcta tctgacctgg
     1501 agccagcttg gtcttacgca acagactgac ggactggtaa gcaacgttgg cataggacag
     1561 cgctgggcgc aggatggctg gcttcttggc tataatacct tttacgataa tctgctggat
     1621 gaaaatctgc agcgcgccgg ctttggcgcg gaggcgtggg gagaatattt gcgtttatcc
     1681 gccaactatt atcagccttt tgccgactgg cagacgcata cggcgacctt agaacagcga
     1741 atggcgcgcg gatatgatat caacgcgcaa gtgcggctgc cgttttacca gcatatcaat
     1801 accagcgtta gtctggagca gtactttggc gatagcgtgg atctgtttga ctccggaacg
     1861 gggtatcaca atcctgtcgc gttaaaactg ggtctcaact atacgccagt acctttgctt
     1921 actatgaccg cccagcacaa acagggcgag agcggggtca gtcagaataa cctggggctg
     1981 acgcttaact accgcttcgg cgtgccgctc aaaaagcagc ttgccgccag tgaagtggcg
     2041 caaagccagt cattacgcgg tagccgctat gatacgccgc aacgtaactc gctgccgaca
     2101 atggagtatc ggcagcgtaa aacgttaacg gtttttctgg cgacgccgcc ctgggatctt
     2161 acgcctggtg agacggttgc gttaaaattg caggtgcgca gcgtgcacgg tattcgtcat
     2221 ttgagctggc agggcgatac acaggcatta agtttgacgg caggaacgga cacccgcagt
     2281 accgagggct ggacaatcat tatgccggcc tgggatcacc gcgaaggcgc ggcaaatcgc
     2341 tggcgtttat cggtggtggt tgaggatgaa aaaggtcagc gtgtctcttc caatgagatc
     2401 acgctcgcgc tgactgaacc gtttatcacg atgccggacg ataatccgca ttggcaaccg
     2461 ttccaggagc aataattaaa agatgcgttc ctgatgcatc cagacggcgg cctccacgcg
     2521 cgatttcagc ttcattttct tgagcatatg tttcacgtgc actttgaccg tactttcggt
     2581 gatatccaga cgccgggcaa tcatcttatt tggcaatccc tgcgcgatga gcttcagaat
     2641 atcgcgctca cgcggggtga gttgcgtcac atcgcgatcg gtggtagcgc ggttggcccg
     2701 caggctggcc gccagtaccg gcgttaacgc ttcacttaat accatttcgc cggcggcggc
     2761 ctgttgtaac gctttgagca agtcctccgg ctctatgtct ttcaacagat aaccatccgc
     2821 gccgcgcttt agcgccgtga cgacatcttc ttcatggttg gatacgctga aaacgacaat
     2881 acgtcctgac agcgcttttt cgcgtaattt atccagcgtt tcgagaccat tcattcccgg
     2941 catattcaaa tcaaggagga tcagatcggg atcgagcgat tccgccaggt caataccctg
     3001 ctcaccgttg ctggcttctc cgaccacgct gatatcgggc gccatactca caagctgctt
     3061 tacacccgtg cgtagcatcg gatggtcatc gattaacagg atggttgccg gttcctgatt
     3121 attcatgggt atctccctgg gtttctgtga agtttgtttc tggaataaaa gtaacagtga
     3181 cctctgttcc gccagtctcg cgtcggcgta cctggcaatc gccgcgcaaa ctttgcgccc
     3241 gatcgcgcat gatgatcatg ccgtagtgat tactgcgttc ggcgttttcc gggacgccgc
     3301 agccattgtc ctgcactttt agtttgacct gtttgccaca ttgcgtcact gtcaccacca
     3361 catcgtcggc atgagagtgt ttaagggcgt tgctgggggc ttccctggca atttgcaaca
     3421 ggtgtatcgc ctggtgtgat ggcaccaggc gggggggaag ctgataatcc agttttaccg
     3481 taaagccaaa ccgggcgctg aactcctggc agcttgcctc cagcgccgga cgtagcccgg
     3541 gttccgtcaa ctgtaagcgg aaagtggtta acagttcgcg cagttgcgcc caggagcagt
     3601 tcagctcatt gcgaatttgg ctgagtaact cacggctgct ttccggtaac gcgtcgccct
     3661 gcatttgcag gcagctcacc tgcatcttca tacaagagag cgactgggca atagaatcat
     3721 gcagttcgcg ggcaatggtg gcacgctctt ccatgacaat caaccgctgc tggcgctcct
     3781 gatgcctgtc gagcgccaga gtcgcggtaa gctgttcaac cagcgtgtcc accaactgtt
     3841 gctgatcgtg gctgagatgg cgtccatagg gcagcgtcgc cagcaaaata ccgtattggg
     3901 tgtgagagtc ggtgagccgc cattttaagg tggtgccgcc gttaatcatc ggcagggcgc
     3961 tacgtgggca aaggtggcag cctttatcat cgcaactgat gtccgactga caggtaaatt
     4021 cctggtgatt atcttcatct tccaggtcat agactcgcag ctcaatatca tgcaactggg
     4081 ttaaattttg caggccattc agtaccggtg aaagacgttc acatagcgga gcctgtgaat
     4141 gcagtcggcg gttggcttgc cacaaaaacg agagaatctg gtttttatgt tccagaccgg
     4201 ctgttttttc ctgtactcgc tgttccagta ctgcataact ttcggccagt tcttcagaca
     4261 tattattgag cgcagaaccc aacgcggcca tctcattgcg tccactgata ttggcacgtt
     4321 gggtaaagtc gcgctgactg acggcgcgcg ccattgataa caactgtttc cagggctgca
     4381 aaaggcgaac acgtagccag ataatcgtaa ataccagcaa tagcgccata aagatcgcca
     4441 ttacccggtg aactaatacc actcgttcga tacgcaattc agtcgtatgg tcgaacgacg
     4501 tcaccaggcg atccaggccc gccacaaagc gcgtgatatc ttctgcgacc gcgtgcgcgt
     4561 tttgcgcgtg ctgtagccct ggcgagagtt cgttatgcca gtaatcctgc aacgctttaa
     4621 gctgcttctg ctgcccgtct cgctcagcgg cgcgggtcag ttcagggctg aatgccgttt
     4681 gctccatctc atccagcagc ttttgatctt tagcatccag cgggacagcg gccagtagtc
     4741 gatagctttg catacgcaat gagcccgctt tattaatcgc atgagcgcta ccctgcacgc
     4801 cctgaaccag ccagccggaa accgccatcc ccgccacgcc gatagcggta gagagcatga
     4861 caatcagcgc cagttggtta accagcgtaa gaggagagaa acaccgttta aacatgttac
     4921 cttctttctt cggggtaatg tcgccgaaaa aacgtagcaa aaaagggggc gtcaatcggc
     4981 tgtgccgcta ttctcaacga tacagcggag tatacccata cctataacga gttactcctt
     5041 aattgccgcc gtaaagaggt atctgcgacg ggaaggagta gacagacaca gcatggtgaa
     5101 aaaccacagc ttttttacca aaatagccta ctcattaagg gtaataacta tttttagtcg
     5161 ccggtgatga cgacttttcc tttgatttat atcaacttac cttcggcagt aaaccctaat
     5221 gtggcagaca tcaaatcaag aatcagaggt gtctatgagt cactcatccg ccccggaaag
     5281 ggcaactggc gctgttatca cggaatggcg tccggaagat ccggcgttct ggcagcagcg
     5341 cggccatcgt gtcgctagcc gtaatttgtg gatttctgtc ccgtgtttac tgctggcgtt
     5401 ttgcgtctgg atgctattca gcgcagtggc ggtgaacctg ccgaaagtgg gatttaattt
     5461 tacgaccgat cagctcttta tgttgactgc gctgccatct gtttccggcg cgctgctacg
     5521 ggtgccttac tcctttatgg tgccgctatt tggcggacgt cgctggacag cgttcagtac
     5581 cggtatcctc atcgtgcctt gcgtatggtt aggctttgcc gttcaggata ccagtacgcc
     5641 atttagcact ttcattatta tttccttgct gtgtggtttt gccggcgcga actttgcctc
     5701 cagtatggcg aacatcagct ttttctttcc taaacaaaag cagggcggcg cgctgggtct
     5761 gaacggcggt ctgggcaata tgggcgtgag cgtgatgcag ctggttgcgc cgctggtggt
     5821 ttcgctctct atctttgccg cctttggcag ccacggtgta gagcagccgg acggttctca
     5881 gctctatctg gcgaacgcag cctggatttg ggtgcctttc ctggccattt ttacgctggc
     5941 agcgtggttc ggcatgaacg aactggcgac gtctaaggcc tcgctaaaag agcaactgcc
     6001 ggtgctcaaa cgtggtcatc tgtggatcat gagtctgctg tatctggcga ccttcggatc
     6061 gtttatcggt ttctccgcgg ggttcgctat gctgtctaaa acgcaattcc cggatgtgca
     6121 gatcctgcat tatgcgtttt tcggtccgtt tatcggcgcg ctggcgcgtt cggcaggcgg
     6181 cgcaatttct gaccgtctgg gggggactcg cgtcacgctt atcaactttg tcctgatggc
     6241 gattttcagc ggtctgctgt tcctgacatt acctactggc ggcgttggcg gtagctttat
     6301 cgcattctac ggggtatttc tggcgctatt cctgacggcg gggctgggga gtggttctac
     6361 cttccagatg atctccgtta tcttccgtaa actgacgatg gaccgggtaa aagcggaagg
     6421 cgggtcggac gaaagagcca tgcgtgaagc ggcgaccgat acggcggcgg cgctgggctt
     6481 tatttccgcg attggcgcga ttggcggctt ttttattccg aaagcgtttg gttcatcttt
     6541 agcattaacc ggttcgccag tcggcgcgat gaaagtcttt cttattttct atatcgcctg
     6601 cgtcgttatt acctgggcgg tatatggacg tcattctaaa aataaaaagt aacttttgat
     6661 tatcctttgc gcggcgttag accgcgcttt tttttacccg catttagtta caacatactt
     6721 atagtcaaga agagaggcgc gacagggctg accacgcaca tttttatcgg tcatccaggg
     6781 ggatacccct taatacccac ttgttgaaaa tttaacattc atgtcgtgcg taaatttaat
     6841 tttatgtaat taaatcagta atatatataa ataaaactcc tcctccaaaa ggagtatgcc
     6901 ggaggtttgc gcgccatttg catccctgtc cgccttgatc gttatcaatt ctcacgccca
     6961 ttcagcgcgt taccttcgcc cttagttaag caatgtcgat ttatcagaga gccgtaaggt
     7021 tccacacagg agaaacccga tgagtaaatt cctggaccgg tttcgctact tcaagcagaa
     7081 gggcgaaacc tttgccgatg ggcacggcca gcttctcgaa acaaaccggg actgggagga
     7141 cggataccgc caacgttggc agcatgacaa aattgtgcgc tcaacccatg gggtgaactg
     7201 caccggttct tgtagctgga aaatttatgt caaaaatggt ctggtgacct gggaaacaca
     7261 gcaaaccgat tacccgcgca cccgtcctga tatgccaaac catgaacctc gcggctgccc
     7321 gcgcggggca agttactcct ggtatctcta cagcgctaac cgactgaaat atccgctaat
     7381 gcgcaaacgt ctgatgaaga tgtggcgcga ggcgaaaaaa ctgcatcgcg atccggtaga
     7441 ggcatgggcc tccatcattg aagatgccga taaagccaaa agcttcaaac aggcgcgtgg
     7501 tcgtggcggc tttgttcgct cctcatggca ggaagtgaac gagctgatcg ccgcttccaa
     7561 cgtgtacacc gtgaaaacct atggccctga ccgcgtcgcg ggcttctcac ccattccggc
     7621 gatgtcgatg gtttcctacg cttccggcgc acgttatctt tcgctgattg gcggtacctg
     7681 cctgagcttc tacgactggt actgcgacct gccgccagcc tccccgcaaa cctggggcga
     7741 gcagaccgac gtgccggaat ccgctgactg gtacaactcc agctatatta tcgcctgggg
     7801 ctctaacgtg ccgcaaaccc gtacgccgga tgcccacttc tttaccgaag tacgttacaa
     7861 aggcactaaa accgtcgcgg tgacgccgga ctatgccgaa atcgccaaac tgtgcgatct
     7921 gtggctggcg ccgaagcagg ggaccgatgc ggcgatggcg ctggcgatgg gccacgtcat
     7981 gctgcgcgag ttccacctcg acaacccgcg ccagtacttc accgattatg tccgtcgcta
     8041 taccgacatg ccaatgctgg tgatgcttga agagcgtgat ggttattatg ccgcaggtcg
     8101 tatgctgcgc gctgccgatc tcgttgattc gctggggcag gaaaataacc cggaatggaa
     8161 aaccgtcgct atcaacagca acggtgaaat ggtggcgcca aacggttcaa ttggtttccg
     8221 ctggggcgaa aaaggcaaat ggaacctcga acagcgcgac gggactaccg gtgcagaaac
     8281 tgaattgcag ctcagcttgc tgggcagcca ggatgagatt gctgacgtgg gcttcccgta
     8341 tttcggcggc gagggttcag agtactttaa tcatgtggcg ctggataacg tcctgctgca
     8401 taaactgccg gcaaaacgtc tgcaactggc cgatggttct tcagcgttag tcactaccgt
     8461 ttacgatctg accatggcga actatggtct ggaacgcggc ctgaacgatg aaaattgtgc
     8521 cgccagttat gatgatacca aagcatatac gccagcatgg gccgagcaga tcaccggcgt
     8581 gccgcgggcg cagatcatcc gtatcgcacg ggaattcgcc gataacgcgg acaaaacgca
     8641 cgggcgttca atgattatcg ttggcgccgg tctgaaccac tggtatcacc tcgatatgaa
     8701 ctatcgcggg ctgatcaata tgttggtgtt ctgtggttgc gttggtcaga gcggcggcgg
     8761 ctgggcgcac tacgtcggcc aggaaaaact gcgtccgcag accggctggc agccgctggc
     8821 gtttgccctt gactggcagc gtcccgcgcg tcacatgaac agcacctctt acttctataa
     8881 ccactccagc cagtggcgct acgagacggt gaccgccgag gagttactgt cgccgatggc
     8941 ggacaaatcc cgctatagcg gccatctgat tgacttcaat gtgcgcgccg aacgtatggg
     9001 ctggttgccg tcggcaccgc agttaggcac caacccgctg tatattgcgc gtgaagcgga
     9061 aaaagccggt atgacgccgg tagattatac cgtcaaatcc ctgaaagacg gttcgattcg
     9121 ctttgccgcc gagcagccgg aaaacggtaa aaaccatcca cgtaacctct ttatctggcg
     9181 ttccaacctg cttgggtctt ccggtaaagg tcacgagtat atgctgaaat atctgctggg
     9241 tactgagcat ggtattcagg ggctggatct cggcaagcag ggcggtgtga agccggaaga
     9301 agtggaatgg cgtgacaatg gcctggacgg caaactggat ctggtggtga cgctggactt
     9361 ccgcctgtcg agcacctgcc tgtgctccga tatcgtactg ccgaccgcca cctggtatga
     9421 aaaagacgat atgaatacct cggatatgca tccgtttatt catccgctgt ctgccgccgt
     9481 agatccggcc tgggaatcga aaagcgactg ggaaatctac aaaggcattg cgaagaaatt
     9541 ctccgaagtc tgtgtaggcc acctgggtaa agagactgac gtcgtgacgc tgccgatcca
     9601 gcacgactct gccgctgaac tggcacagcc gctggacgtg aaagactgga aaaaaggtga
     9661 atgcgatctg atcccaggga aaaccgcgcc gcacatcatg accgttgagc gcgattatcc
     9721 ggccacctat gagcgcttta cctctattgg cccgctgatg gagaaaatcg gcaacggcgg
     9781 gaaagggatt gcctggaaca cgcagagcga aatggacttg ctgcgtaagc tcaattacac
     9841 caaagcggac ggtccggcga aaggccagcc gatgctcaac acggcgattg acgcggcaga
     9901 gatgatcctg acgttagcgc cggaaaccaa cggtcaggtg gcagtgaaag cctgggcggc
     9961 gctgagcgag tttaccggtc gcgaccatac gcatctggca actaataaag aagaagagaa
    10021 aatccgcttc cgcgatattc aggcccagcc gcgcaaaatt atctccagcc cgacctggtc
    10081 tggtctggaa gatgagcatg tttcttataa cgccggttat accaacgttc acgagctgat
    10141 cccgtggcgt acgctgtctg gtcgccaaca gttgtatcag gatcaccagt ggatgcgcga
    10201 cttcggcgaa agtctgctgg tgtatcgccc accgatcgac acccgctcgg tgaaagcggt
    10261 gatggggcgt aaatccaacg gtaatccgga gaaggcgctc aacttcctga cgccgcacca
    10321 gaaatggggt atccactcga cctacagcga taacctgttg atgctgacct tgtcgcgtgg
    10381 cggcccgatt gtatggatga gtgaaaccga cgccaaagag ctgggcattg aagataacga
    10441 ttggatcgaa gtcttcaaca gcaacggcgc attgaccgca cgcgcagtgg tcagccagcg
    10501 tgtaccggcg ggcatgacca tgatgtacca cgcgcaggaa cgtatcgtaa acctgccggg
    10561 gtcggaaatt acccagcagc gcggcggtat tcataactcg gtgacgcgta ttacgccgaa
    10621 accgacccat atgatcggcg gctatgcgca gttagcctac ggctttaact actacggtac
    10681 cgtcggctcc aaccgcgatg agtttgtggt ggtacgtaag atgaagaaca ttaactggtt
    10741 ggatggcgaa ggcaatgacc aggtacagga gagcgtaaaa tgaaaattcg ttcacaagtc
    10801 ggcatggtgc tgaatctcga taagtgcatc ggctgtcata cctgttcagt cacctgtaaa
    10861 aacgtctgga ccagtcgcga aggtatggaa tacgcctggt tcaacaacgt agaaagtaag
    10921 cccggcgttg gttttcctaa tgactgggaa aatcaggaaa aatggaaagg cggctggatc
    10981 cgcaaaatca acggcaaact acagccgcgc atgggcaacc gggcgctgct gctgggtaaa
    11041 atcttcgcta acccgcatct gccgggcatc gacgactact acgagccgtt tgattacgac
    11101 taccagaacc tgcatactgc gccggaaagc aaacatcagc cgatcgcgcg tccgcgctcg
    11161 ctgattaccg gccagcggat ggacaaaatt accagcgggc caaactggga agagattctg
    11221 ggcggcgagt tcgaaaaacg cgccaaagat cagaatttcg aaaacatgca gaaggcgatg
    11281 tacggccagt tcgaaaacac cttcatgatg tacctgccgc gcctgtgcga gcactgcctc
    11341 aatccggcgt gcgtggcaac ctgcccaagc ggtgccatct acaagcgtga agaagacggc
    11401 atcgtgctga tcgaccagga caagtgccgc ggctggcgta tgtgcatcac cggctgcccg
    11461 tacaagaaga tttacttcaa ctggaagagc gggaagtccg agaagtgcat cttctgctac
    11521 ccgcgtatcg aagcgggtca gccgaccgtt tgctccgaaa cctgtgttgg ccgtatccgt
    11581 tatcttggcg tactgctgta tgacgccgat gccattgaaa gcgctgccag tacggaaaac
    11641 gaaaaagatc tgtaccagcg tcaactggac gtgttcctcg atccgaacga tccggctgtc
    11701 attgagcagg cgctgaagga cggcgtgccg cagagcgtga tcgatgcggc gcagcaatcg
    11761 ccagtgtaca aaatggcgat ggactggaag ctggcgctgc cgctgcatcc ggaataccgc
    11821 acgctgccga tggtctggta cgtgccgcct ttgtcaccga ttcagtctgc cgccgacgcg
    11881 ggtgaactgg gcagcaacgg tattctgccg gatgtagaca gtctgcgtat cccggtgcag
    11941 tacctggcga atctgttgac cgctggcgac actcagccgg tactgttggc gctgaaacgg
    12001 atgctggcga tgcgtcacta caaacgtgcg gaaaccgtag acggtaaagt ggatacccgc
    12061 gcgctggaag aggtgggttt aagcgaagcc caggcgcagg aaatgtatcg ttacctggcg
    12121 attgctaatt acgaagatcg ctttgtggtg ccgagcagcc atcgtgaact ggcgcgtgac
    12181 gcattcccgg agaaaagcgg ttgtggcttt accttcggcg atggttgcca cgggtctgat
    12241 accaaattca atctgttcaa cagccgccgc atcgacgctg ttgatgtgac cagcaaaacg
    12301 gagccgcacg catgattgaa ctcgtcattg tttcgcgtct gctcgagtac ccggatgctg
    12361 ccctgtggca gcatcagcag gagttgttcg atgcgctcgc gtcatctgag aacctggata
    12421 aagaggatgc ccagactctg ggcgttttcc tgcgcgattt aaccgcgcag gacatgctgg
    12481 atgtacaggc cgcttatagt gaactgtttg accgtggtcg cgccacatcg ctgcttctgt
    12541 ttgaacatgt acacggggaa tcccgcgatc gcggtcaggc gatggttgac ctgatggcac
    12601 agtatgaaca gcacggtttg cagctcgaca gccgcgaact gcccgatcat ctgccgctgt
    12661 atctggaata ccttgcgcag ttgccgaaaa gcgaagcgtt agggggggta caggatatcg
    12721 cgccgattct ggcgttgctc agcgcacgtt tgcaacagcg tgacagccgt tatgcggtgc
    12781 tgttcgatct gctgttaaaa ctggcgaata ccgttatcga cagcggcaaa gtggctgaaa
    12841 aaattgcgaa tgaagcacgt gatgataccc cgcaggcgtt ggatgcggtc tgggaagaag
    12901 agcaggtgaa attcttcgcc gatcaagggt gtggcgagtc ggaaatctcc gctcaccagc
    12961 gtcgttttgc cggggccgtg gcgccgcaat atctgaatat caccaccgga ggacagcact
    13021 aatgcacttc ctgaatatgt tcttctttga tatctacccg tacattgccg gatcggtatt
    13081 tctgatcggt agctggttac gttacgacta cggccagtac acctggcggg cggcttccag
    13141 tcagatgctg gatcgcaaag gaatgaacct ggcgtcaaac ctgttccaca ttgggattct
    13201 gggtattttc gccggtcatt tcctgggcat gttaacgccg cactggatgt atgaagcttt
    13261 tctgccggtc gacgtgaagc agaagatggc gatgattgcc ggcggcgcct gcggaatgct
    13321 gacgctggtt ggcggtattt tactgctcaa gcgtcgtctg ttcagcccac gtgtccgcgc
    13381 caccactacc ggtgcagata ttttgattct ctcattgctg gtgattcagt gcgcgctggg
    13441 tctgctgacc attccgttct ccgcccagca tatggacggg agtgaaatga tgaagctggt
    13501 cgggtgggcg cagtcagttg tgaccttcca cggtggcgca tccgcacatc tggacggtgt
    13561 agcctttatc ttccgtatgc acctggtact ggggatgacg ctgttcctgt tattcccatt
    13621 ctcgcgcctg gtgcatatct ggagcgtgcc ggtcgagtac ctgacccgca aataccagat
    13681 tgtacgtgcg cgtcactgat tttctctcga tgccctaaac tccgcttcgg cggagttttt
    13741 ttatggctgt ttgccggagt gcagcataaa tgccttatcg accgccgcct tgtttcgttt
    13801 acagcgggtc tgccatgtct ggcatctgaa tccggactct ttgtttctgg gtttattcag
    13861 catctgtgcg agttttttgt aagcagaaaa aggatgatgc agcatataat cacgccataa
    13921 acgacaataa ggatagttgt atgcgttttt catcaatttt caaaataata atattaaata
    13981 tatttatttc aaaaatggct cacgctgctg tctgcgagga gcgctatccc cccgactcag
    14041 aagaatgcca gtacgttcag gaattagagc aaaaagcgga acaaggagat gaaggcgcgc
    14101 agttctcgct tggaagctgg tatgcggagg ggcgatacgt taagcctgat tataaactag
    14161 ccataaaatg gctggagaaa gcgggtaaac aaggttctga tttttcctat ttcatccttg
    14221 gctatcatta caactatggt gaaaattttc cacttagtcg gcaaaaagcg ctggagtggt
    14281 atcgcaaggc ggcagaacta ggggatagta gtacgcaaga aatcctcggt gacgcctata
    14341 tgtatggcga tgggtttccc caaaataccc agctagcgct ggagtggtat cgaaaagccg
    14401 cctctccaac caatgatgcg ggcgttgtcc gcggccaggg ttcagcttcg tcagcacaat
    14461 ttaagcttgg agtaatgtac gcccacggtc agggcgttcc tcaggattat cagcaaacgg
    14521 cgatcttgat gcgtaaagcg gcggaaaata tgtactaccc cgcgcaactt tatctcggtg
    14581 ttgcctattt ttatggtgaa ggcgtgcctc aggattatcg tcaggcagtt tactggctta
    14641 atgaaggtat accaggcagc tatacgccag gccacattcc gctgaatgcg ctctatgata
    14701 aagcgcatcc cgctgaccag gttcactctc agacgtggta tcgaaaaaca gcgcaacgcg
    14761 tgatggcaaa ggtacagttc aattttggcg tatggtatta caacggttat cacttattga
    14821 aagatcacaa tctggcgctg gagtggtatc gcagagccgc agcgcaggga ttggccgagg
    14881 cgcaggatgc gatcggcgtg atgtttatgc agggcgaggc cgtttctcag gactaccaac
    14941 aggcgctggc gtggtatcgc aaagccgcac gccagggact gcctgctgcg caaacgcatc
    15001 tgggcatcat gtctgctttt ggtcgcggcg tcgcgcaaag cgacagacag gctatcgcat
    15061 ggtatcgaaa agcagcaaaa caggattttg cgaaagcgca atatcagctt ggcgtagcat
    15121 atagcatggg aagaggcgtg cctgaaaata gccggaatgc gctgaagtgg taccttaaag
    15181 cggcagagca ggggtttact ccggcacaat tagcgcttgg ggaaatttat gctcatgggc
    15241 gccagggggt gcctaaagat aataagcagg cctatatttg gtattacatg gcaagtatat
    15301 atacggaaaa atctaaggat gattgttcag cgctcattgc cgaaagaaac cgactcaagg
    15361 gaacgcttac cccagatcaa cttagcgaga catatgccgc ctttgatctc atcaggcgaa
    15421 aaatcaacca gtcaaaggag gcgaaaaaga ttgccaggaa gaagtattga taagatagcc
    15481 aataagctat ggcgccatgg tgtgaagtct gcctgtgggg taaggatacg gggcagtgct
    15541 gattgatttg aaattggtgc cttatgaagt aatggtggtg ggggaaggat gactcagcgc
    15601 tgcgcgtttc gcccttcggg tcgttgcctg cggcaacgtt ctctcgcttt cgctcgaatc
    15661 gaaccttagt cgaagcttct catccttccc cacatgggta gaattatgac aaaccgatgt
    15721 cgaatgaagg ttagatgctt tctgaagatc atgatggtgg tgggggaagg atgactcagc
    15781 gctgcgcgct tcgcccttcg ggtcgttgcc tacggcaacg ctttctcgct gcgctcgaat
    15841 cgaaccttcg aagtcgatga cggcagattt acagtctgct ccctttggcc gctcgggaac
    15901 cccaccacgg gataaattca ttatgctgct tgcattctat agcgggaagg attattcgga
    15961 gctaaagctc ctcacccttc gggccgttgc ctgcggcaac gttctctcac tattgctcga
    16021 gtcgaacctt gaagtcgatg acggcagatt tgcagtcagc tcccttatga tcgctcggga
    16081 accccaccac ggggtaatgc ttaatactgg cccgcttcct ttcgggaagc ggggcgcatc
    16141 atatcaaatg acacgtcgct gtaaagcatt cctttgcctg aaatgaactg tttgcgtact
    16201 tttcatccgt aacggattaa agctaatcaa ttcatattac tgacgattaa agaataatcg
    16261 tccgattgcc gtaaacaaag acccgctgcg ccagaacctg atacagcgcg cggcttaata
    16321 cgtttttctc aacgtcgcgc ccggcacgca tcatatcttc tgcggtgtag gtgtgatcga
    16381 cgtgaatcac gtcctgcata atgattgggc cttcatctag attatcattc acatagtgcg
    16441 cggtagcgcc gatgattttc acgccgcgct cataggcctg atgataagga cgcgcgccga
    16501 taaacgccgg caggaatgag tggtggatat tgataatttt gttcgggaag cgcgccacaa
    16561 aacctggcgt caaaacacgc atatacttgg ccagcactac atagtccggt tgatgggtat
    16621 caatggcgtc cgccatcttc gtgtcatgct cttcacgcgt taatccctca tggctgacca
    16681 gttcgaaagg gatctcaaaa cgttcaacca gcgagcgtaa cgtttcatgg ttgccaatga
    16741 ccgcggcgat ttcaacatcc agcccgccat agttggcttt catcagcagg tcgcccagac
    16801 aatgcgcctc tttggtaacc agaatcacta cccgacggcg tccggcggga ttgagttcac
    16861 gaacagagcc ttccggtaag gcgctgtcca gatcggccag aagagtggaa tcattgaaga
    16921 tgccttccag ctcggtccgc ataaaaaagc gtccggtgcg atggtccaca aattcattgt
    16981 tttgcacaat attaagctcg tgcttatagc aaatgttggt aatccgcgcg ataaggcctt
    17041 tttgatcggg acaaatagta cgcagaactt tacgttgtag tgattgcatt gccggaaaaa
    17101 tcctgttgag agtgtttgct gtatcaatac tgtcaggcgt cactggccgc agcacttttt
    17161 aaattttttg cctgaaccgc acgggcaggg atcatttcga cccaactgcg ggcgggtacc
    17221 gtcaatataa taccactgac cgttttcttt gataaaacga gaacgttcga taatcgcccc
    17281 gtttttccct tgttcggaaa aacgcgcgat aaaactaaca taccctgtat tttctgcttc
    17341 tgactaggta tgttcaaaaa tagtcaggcc gagccacctg gtattggcaa atccggcgat
    17401 gatatcatca cgaaacgcgg ccgcattgca agttggatgc cagctcttaa ttaagtaatc
    17461 tgcgtctttc atcacaaaag cgcagtaacg agagcgcatg agatgtgacg gatcgggtgc
    17521 tactcgttct ccggacacaa tacgaccaca acataggcta tactcgtcag cgctaccaca
    17581 gggacaaggc tgagacacaa taatctccct gaatataaaa cggcgttgaa cgccagggtg
    17641 gcattatgtt aactgagcag tggcgatgtt gctacgtctt gaagccaggg gaagtcgtta
    17701 agtacgatga gaaaaatgaa aatagggctg gcgctgggat ctggcgcagc gagaggatgg
    17761 tctcatattg gggtcatcaa agccctcaag caaacaggca ttgatattga tatcgttgca
    17821 ggatgctcaa taggttcact ggtcggcgcc gcgtatgcct gtaataaatt atcggcgctt
    17881 gaacagtggg tatgttcatt ccgctactgg gatgttttac gcctgatgga tgtatcctgg
    17941 ggcagaggag ggttgcttcg cggcaaacgc gtatttaatc actatcggga tattatgccc
    18001 gtcacggatt ttgaccactg ttcaagacgt tttggcgcgg tcgcgacgaa tcttagcacg
    18061 ggacgagagc tatggtttac tgaaggcgat ctacaccttg ccgtacgcgc gtcgtgcagt
    18121 atgccagggc tgatgtctcc ggttgaacat aacggttact ggctggtaga tggcgcagtc
    18181 gttaatccgg tacctgtttc gttaaccagg gcgctggggg ctgatatcgt tattgcggta
    18241 gacctgcaac atgatgccca cctcatgcag caagatttgc tctctgtaaa tgtcgggaat
    18301 atcaatgaag agagcgatga tgcgctgccc tggcataagc gtttaaaaga acgtttcagt
    18361 agcctgactt cacgccgtgg cgtgagttcg tctggggcaa tggaaatcat gacaacctcc
    18421 atccaggtgt tggaaaatcg tcttaaacgt aaccgtatgg ctggcgatcc gcctgatatt
    18481 ctcattcaac cattctgtcc gcaaatctct acgctggatt ttcatcgcgc ccatgccgct
    18541 attgcggcgg gtcagttaac cgtagagaaa aagatggacg aacttatacc cttggtgcgt
    18601 accgacgttt aatgtacctt ttacgatcac ttaagcaaat tctgacaggc gcaagcggca
    18661 ataccatgcc actattgatt aaagccagtc aggggagaga acatgacgca gccattggtc
    18721 ggaaaacaga ttcttattgt tgaagacgag cctgtatttc gctcgcttct ggattcgtgg
    18781 ttttcctctt tgggagcgac aacggcattg gcaggcgacg gggtggatgc cctggagttg
    18841 atggggcgtt ttacccctga tctcatgata tgtgatatcg ctatgccgag aatgaacggt
    18901 ctcaaactgg tagaaaactt acgtaatcgc ggagaccaga cgcctattct ggttatttcc
    18961 gcaacagaaa atatggcgga tatcgccaaa gcgttacgcc ttggggttga agatgtcttg
    19021 ctgaagccgg taaaagatct caaccgcttg cgggaaaccg tattcgcttg cttataccct
    19081 aatatgttta actcgcgggt tgaagaagaa gaacgcctgt ttcgtgactg ggatgcaatg
    19141 gtgagtaatc cgaccgccgc agcgcaattg ttgcaggaat tgcagccccc ggtacagcag
    19201 gtgatttctc attgccgcat taattaccgg cagctcgtct ccgccgatca gcctggactg
    19261 gtgctggata ttgcgccgct atctgataac gaactggcat tttattgcct ggatgtcacc
    19321 cgggcgggcg ataacggcgt gttagccgca ttgttgctgc gggcgctatt taacggctta
    19381 ttgcaggatc agctcggcca acaaaagcac cgtttaccgg agttaggcgc gctattaaaa
    19441 caggtaaatc atctgctcag acaagccaat ttacctgggc aattcccgct atttgtcggc
    19501 tactatcaca gtgagctcaa aaatttgatt ctcgtctccg ccggattgaa cgccacctta
    19561 aatacgggcg ctcatcaggt tcaaattagc agcggcgtgc cgctaggaac attgggtaac
    19621 gcctacctta accaattaag ccagcgttgc gactcgtggc agtgtcaaat atggggcgca
    19681 ggagggcgtc tgcgattgat gttgtctgcg gaatgaccaa acggaagagt gagcggaaat
    19741 tgctttaccg gcctttcccg acgagtgtta ctatctgcgg cagatttata agtatttgtc
    19801 ttaattatac caatataagt cctttttgga cctgaggctt gttctggtac tgatatactg
    19861 gaacacgata cagattaatg aacacgttca atacatgaac agtccaggag aattttaaat
    19921 ggctgccctt aattcgaaag tcaaaaaagc cgttatcccg gtcgcgggat tgggaaccag
    19981 gatgctgcca gcgaccaaag ctatcccgaa agagatgctg ccgctggttg ataagccatt
    20041 aattcagtac gtcgtgaacg aatgtatcgc tgctggcatt actgaaatcg tgcttgttac
    20101 gcactcgtct aaaaactcta ttgaaaacca ctttgatacc agttttgagc tggaagcgat
    20161 gctggaaaaa cgcgttaagc gtcagcttct ggaggaggtt cagtctattt gccctccgca
    20221 tgtcactatt atgcaggtac gtcaagggct ggcaaaaggc ctgggccatg ccgtattgtg
    20281 cgcgcatccc gttgtcggaa acgaacctgt cgctgttatt ctgccagacg ttattcttga
    20341 cgaatatgag tccgacctgt ctcaggataa cctggctgaa atgatccgcc gtttcgacga
    20401 aaccggcaat agccagatta tggttgagcc agtagaagat gtgactgcat acggcgtggt
    20461 cgattgcaaa ggcgttgagc tggcgccggg cgaaagtgtg ccgatggttg gcgtggttga
    20521 aaaaccaaaa gcggatgtcg cgccgtctaa ccttgcgatt gtcgggcgtt atgtgttgag
    20581 cgcggatatc tgggcgttgc tggcgaaaac ccctccgggc gccggggatg aaattcagtt
    20641 gaccgatgct atcgatatgc tgatcgaaaa agaaacggtt gaagcctacc acatgaaggg
    20701 taaaagccat gactgtggta ataagttagg atatatgcag gcattcgttg aatatggcat
    20761 ccgtcataat tcgctgggtg ctgaatttaa agcctggctt gaagaagaaa tgggtattaa
    20821 gaagtaacga tacgttataa attttttaac agaagcgctg gtaaatccgg cgcttttttt
    20881 atgcctgggg tcgtcagcgg agaactcagg caaaaaaaat cccgccagcg gcgggatttt
    20941 aagcatccag gaagtaaatt attccttgat caggaaatct tccagttgct taccttgttc
    21001 ttccattgct tttttgatta cagccggtgt acgaccctgg ccagtccagg ttttagtttc
    21061 accgttttcg tcaacatagc tatatttagc cggacgagct gcgcgtttag ctttggtacc
    21121 ggatttagcg gcagccatgc tattcagcag ttcattcggg tcaatgccgt cggcaattaa
    21181 catttcacga tactgttgca gtttacgagt gcgttcttcc acttcagcag cagcagcgct
    21241 ttcttcttca cgacgctcat taacgacaac ttctaatttt tccagcattt cttcaagcgt
    21301 ttccagagta cattctcttg cctgcgcacg aagagtacgg atgttgttca gaattttaag
    21361 tgcttcgctc attgtagtaa tctcaaactt atattggggt ggtttgttga gctaataata
    21421 gagcgataaa ttcagttgtg caatagccag gaatgtaagg aattcaaaat tacgctttat
    21481 taagcacacg ttttaattat ctcaacttaa attttccttg aggcgccgca caaaaaagag
    21541 cttattgcca ggggggatac tcaccgtctg tcactaaaaa tttaggattc aggtcacatt
    21601 ttatcatgat gaaatacgat ctcattgcag agatatcaat ctcttgtatt agctttcctt
    21661 acaagaaaac cctattactt tgcattgggt atgagtaacg gtaacaataa gtacaaggtt
    21721 ttcatattgg cgggtgatga taagcattgt tgatgaattt taacggcata atttgtgaag
    21781 gaatgtgtat atacccttca tacttcaagt tgcttatgtg ttggctacgc tcgcgcaccc
    21841 cagccacata gttatctatg ctcctgggga ctcactccct tgccgccttt aagcaactcg
    21901 aattattttg ggtatagtga gcgatgtttg tacaattctt aatactcacc ggagcgcgag
    21961 ccgcgccgtc gcatcggtaa attatggtac aatcccgcca atctttattt cactcaggtg
    22021 aggtcctgcg accaatggca cagctatatt tctactattc ggcaatgaat gcgggtaagt
    22081 cgactgcact gctgcaatct tcatacaatt atcaggaacg cgggatgcgt accgtcgtat
    22141 atacggcgga aatcgacgat cgtttcggcg caggcaaagt cagctctcgt atcggtttgt
    22201 cgtcgccggc aaaattgttt aaccaaaata catccttgtt tgaagagatt cgtgccgaga
    22261 gcgcgcggca gacaatacat tgcgtgttag tcgacgaaag ccagtttttg actcgccagc
    22321 aggtttatca attatccgag gttgtcgaca aattagatat tccagtactc tgctatgggc
    22381 tacgaacaga ctttcgtggg gagctctttg tcggcagcca atacttgctg gcatggtcag
    22441 ataagctggt ggaattaaaa actatctgtt tctgcggtcg taaagccagt atggttttgc
    22501 gccttgatca ggacggcagg ccttataacg aaggcgaaca ggtggttatt ggcgggaatg
    22561 aacgctacgt ttcagtttgc cgtaagcatt ataaggacgc gctggaggag ggctcactga
    22621 cggcgattca ggagcgccat cggcacatat gatacctgag gtaaagatcg gcttataaaa
    22681 cgccctgtag cgctttggag gtcattattc aggcctcctg acgaagggcg tgccgtgagc
    22741 gcgtaggcca gatggtaagc atagcgcctt caggcatcag ataaacaggt aaaacaaaaa
    22801 aacggcctca attgaggccg ttattgtcat gctaaaacag ataacgaatt aagcggattt
    22861 tttcgctttt ttctctgctt tcggtgcggc aacgacgtct ttcttcgctg caacttcacc
    22921 ttcggtgaaa tcacgaccgt agtaggtatc cagcagaatc tgtttcagtt cggagatcag
    22981 cggataacgc gggttagcgc cggtgcactg gtcatcgaag gcatcttcag acagtttgtc
    23041 aacgtgtgcc aggaagtcag cttcctgcac gcctgcttca cgtatagact taggaatgcc
    23101 cagctcagct ttaatgcttt ccagccatgc cagcagtttt tcaatcttag cggcggtacg
    23161 gtcgcccggc gcgctcaggc ccaggtggtc agcaatttca gcgtaacgac ggcgtgcctg
    23221 cggacgatcg tactggctga aagcggtctg cttggtcggg ttgtcattcg cgttgtagcg
    23281 gataacgtta caaatcagca gggcgttcgc cagaccgtgc ggaatgtgga actgagagcc
    23341 cagtttgtgc gccatggagt gacatacacc gaggaaggcg ttggcaaacg cgataccggc
    23401 gatagtcgct gcactgtgaa cacgttcacg cgcaaccggg tttttagacc cttcgtggta
    23461 agacgccggc aggttttctt tcagcagttt cagagcctgc agagcctgac cgtcagagaa
    23521 ctcagaagcc agtacggaaa cgtaagcttc cagggcgtga gttaccgcat ccagaccacc
    23581 gaacgcacac agggacttcg gcatatccat caccaggttg gcatcgacaa tcgccatatc
    23641 cggggtcagg gcatagtcag ccagcggata tttctgaccg gttgcattgt cggtcacaac
    23701 cgcaaacggt gtgacttcag aaccggtacc ggaagtggtg gtgacggcga tcattttcgc
    23761 tttcacgccc attttcggga acttgtagat acgtttacgg atgtccataa agcgcagcgc
    23821 cagttcttcg aagtgagttt ccggatgttc gtacatgacc cacatgattt tcgcggcgtc
    23881 catcggggaa ccgccgccca gcgcgatgat cacgtccggt ttgaaggagt tagccagctc
    23941 agcgcctttg cgaacaacgg aaagcgtcgg gtctgcttca acttcgaaga agacttcggt
    24001 ttcaacgcca gccgctttca gcacagaggt gatctggtct gcatagccgt tgttgaacag
    24061 gaagcggtca gtcacgatga gcgcacgttt gtggccatca gtaatcactt catccagcgc
    24121 gatgggcaga gagccacggc ggaagtagat agatttcgga agtttgtgcc acaacatgtt
    24181 ttcagctcgc ttagcaacgg ttttcttgtt gatcaggtgt ttcggaccaa cgttttcaga
    24241 gatggagtta ccaccccagg aaccacaacc caacgtcagg gaaggtgcga gtttgaagtt
    24301 gtacaggtca ccgataccac cctgagaggc cggggtgttg atcaggatac gcgcggtttt
    24361 catcatctga ccgaagtaag caacgcgttc tggctggtta tcctggtcag tgtacaggca
    24421 ggaggtgtga ccgataccgc ccatagcgac cagtttttct gctttttcta ccgcttcttc
    24481 gaaatctttc gcacggtaca tcgctagagt cggagacagt ttttcgtgtg cgaacggttc
    24541 gctttcgtca acgaccgtaa cttcaccgat cagaatcttg gtggtttctg gtacggagaa
    24601 gcctgccagt tcagcgattt tgtaggctgg ctgaccgacg atagcggcgt tcagagcgcc
    24661 atttttcaga ataacgtttt gaaccgcttt cagctcctgg ccctgcagca tgtagccgcc
    24721 gtggctggcg aaacgttcgc gaacggcatc atagacggaa tcaacaacga caacagactg
    24781 ttcagaagca cagattacgc cgttatcgaa ggttttagac atcagaacag acgccacagc
    24841 gcgtttgata tcagcggttt catcaatgac aaccggggtg ttacctgcgc ctacgccgat
    24901 tgccggttta ccggagctgt atgcagcttt aaccatgcct ggaccgccag tggcgaggat
    24961 caggttaata tccgggtggt gcatcagcgc attagacagt tctacggaag gttgatcgat
    25021 ccagccaatc agatctttcg gtgcgccggc agcgatagcc gcttgcagaa cgatgtctgc
    25081 cgctttgtta gttgcttctt tagcgcgcgg atgcggagaa aagatgatgg cgttacgggt
    25141 cttcaggcta atcagcgatt tgaagatcgc agtagaggtc gggttagtgg ttggaacgat
    25201 accgcaaata atgccgatag gttcagcaat ggtgatggtc ccgaaggtgt cgtcttctga
    25261 cagcacgccg caggtttttt catctttata ggcattgtaa atatattcag aagcgaagtg
    25321 gtttttaatc actttgtctt ccacgatacc catacctgat tcggcgacgg ccattttggc
    25381 cagcggaatg cgggcatcag cggctgccag agcggcggcg cggaagattt tgtcgacctg
    25441 ttcttgagtg aaactggcat attcacgctg ggcttttttt acacgctcta cgagtgcgtt
    25501 aagttcagcg acattagtaa cagccataat gctctcctga taatgttaaa cttttttagt
    25561 aaatcatctg cgcgatacgt gagtatagac agatcgacga tactttgtat aaatacctga
    25621 aattcaggtg gttacttaac gtccgtttcg ctctgattta ctaaaagagc ttctgcgtta
    25681 gtatcattta actctaacgc gttacgtcca ggtggcgtaa gcaagattac tcacttctga
    25741 gtagcgattg tgtgatctaa atcaagatta cgcaaagctg acacctttca gcaggccatt
    25801 ttagcctttt atgtaaattg ttaagaaatc gttgtcatga agagtaagtg gattagcata
    25861 acgagtacat ataaataaca gcgatgaatg gatgaaatta ggtgtagata agaggtgaac
    25921 tatgcgaata aaaggcgtat cttctgcgcg ttttgatcat taacgaacat tgacttcatc
    25981 cggctaacgc ttcggagcta accgtgattc aaccgctttt tgattttcct gtttacttta
    26041 agttctttat cgggctcttt gcgctggtta acccggtggg gattattccc gttttcatca
    26101 gcatgaccag ctaccagacg gccacggcgc gtaataaaac taacctcacc gcgaatctgt
    26161 cggtcgcgat tatcttgtgg agttccttat tcctcggcga tggcatcctg cagctgtttg
    26221 gtatttctat tgattcgttc agaattgcgg gcggtatcct ggttgtcacc attgcaatgt
    26281 cgatgatcag cgggaagctg ggggaagata aacaaaacaa gcaagaaaag tcagagacgg
    26341 ccatacgcga gagcattggc gttgtgccgt tagcgctacc gttaatggcg gggccagggg
    26401 cgattagctc cactatcgtc tgggggacgc gttatcacag catcgcgcat ttgcttggtt
    26461 tttcagttgc cattgcgctt tttgcgcttt gctgctgggg cgtgttccgt atggcgccgt
    26521 ggctggttcg tttgctgggg caaaccggta tcaacgttat tacccgaatc atggggttgt
    26581 tgttaatggc gctcggcatc gaatttattg tcacaggaat aaaaggcatt ttccccggct
    26641 tgctcaacta aactcccacc tgttgattta caggcggcgc cctaaggggg ccgccttgtg
    26701 acattcccag tgacattccc acgtaacact tcttactttg ataagcattc agcgttta
//
LOCUS       DAJVSD010000034        26673 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.034, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000034 DAJVSD010000000
VERSION     DAJVSD010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 26673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26673
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.034"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..640
                     /locus_tag="OQP62_001197"
     CDS             <1..640
                     /locus_tag="OQP62_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HCS1720794.1"
                     /translation="LSDADVKALSNNACKQMDSENQLAGSKSKYTKRLSKIAKALGNN
                     IDGTPVSYKVYMTSDINAWAMANGCVRVYSGLMDLMTDNEIEGVLGHELGHVSLGHSR
                     KAMQTAYATLAARDAISATSGVAAQLSQSQLGDLAEGVINLAFSRSQESDADDFSYNL
                     LKKRGINTQGLVTAFDKFAIMDAGHAKSLMDSHPASADRAQHMRDRIAEDKK"
     gene            813..1496
                     /gene="cmk"
                     /locus_tag="OQP62_001198"
     CDS             813..1496
                     /gene="cmk"
                     /locus_tag="OQP62_001198"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HCS1720795.1"
                     /translation="MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA
                     LAALHHHVDLASEDALVPLASHLDVRFVSTDGNLEVILEGEDVSGEIRTQEVANAASQ
                     VAAFPRVREALLRRQRAFREAPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRML
                     QLQENGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTRLSIEQVIEKALQ
                     YARQKLALA"
     gene            1610..3283
                     /gene="rpsA"
                     /locus_tag="OQP62_001199"
     CDS             1610..3283
                     /gene="rpsA"
                     /locus_tag="OQP62_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HCS1720796.1"
                     /translation="MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKS
                     ESAIPAEQFKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAY
                     EDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLD
                     QKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLL
                     HITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPE
                     GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLD
                     IDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH
                     LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKK
                     GAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDDVEAKFTGV
                     DRKNRAISLSVRAKDEADEKDAIATVNKQEDANFSNNAMAEAFKAAKGE"
     gene            3439..3723
                     /gene="ihfB"
                     /locus_tag="OQP62_001200"
     CDS             3439..3723
                     /gene="ihfB"
                     /locus_tag="OQP62_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006819309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HCS1720797.1"
                     /translation="MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIE
                     IRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG"
     gene            3953..6217
                     /locus_tag="OQP62_001201"
     CDS             3953..6217
                     /locus_tag="OQP62_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC family protein"
                     /protein_id="HCS1720798.1"
                     /translation="MKITTVSVCVVCGILPLMILPVLPDTWILAVLFCLACLLCLIPH
                     HYARYAALTLLFFMWGIFAARQAIWVGNVLPAATQEATVVITATDHMTTHYGRITHLH
                     GKPLFPAVGIVLHGQYLPTEVCAGQQWAMTLKVRAVHGQLNEGGFDSQRYALAQHQPL
                     TGRFLQAKAINPECSLRGRYLASLRATLAPYPWQQVILALGMGERGAVSQEVKAVMRD
                     TGTAHLMAISGLHIAFAALLAAGLIRGGQFFLPVRWIRWQTPLLGGILCAICYAWLTG
                     LQPPALRTVAALSVWGGLKLSGRQWSGWQVWCCCLAAIIFADPVAVISQSLWLSAFAV
                     AGLLFWYQWFPAPNGNFPRGLRWLLNLLHLQAGITLLLLPLQVALFHGISVTAMLANL
                     FAVPWVTFVTVPLILAGMILHLTGPFFLEEWVWYLTDRALAALFYLLNALPQGWVNID
                     NRWQWLTLLPWLTLIAWRLNVWRTWPAVCLCGLLLMSWPLWRPINASGWQVHMLDVGQ
                     GLAIAIVRGDKVILYDTGRAWPEGDSGQQVIIPWLRWHNLTPEGVILSHEHLDHRGGL
                     RSLQQVWPSMWIRSPLGWQGHLPCFRGEQWQWQGLTFQAHWPLRESADRGNNRSCVVK
                     VDDGVHSILLTGDIEAGAEQKMLSRYWRHLAATFIQVPHHGSNTSSSLPFIQRVHGEA
                     ALASASRYNAWRLPSRKVKQRYRQQAYQWFDTPHQGQISLLFSPQGWRIQGLRDQILP
                     RWYHQWFGVSEDNG"
     gene            6254..8002
                     /gene="msbA"
                     /locus_tag="OQP62_001202"
     CDS             6254..8002
                     /gene="msbA"
                     /locus_tag="OQP62_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A ABC transporter ATP-binding
                     protein/permease MsbA"
                     /protein_id="HCS1720799.1"
                     /translation="MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFM
                     LSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRR
                     RLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMM
                     FYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVL
                     IFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM
                     DSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRV
                     IDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF
                     YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQI
                     EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT
                     SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL
                     AQHGVYAQLHKMQFGQ"
     gene            7999..8976
                     /gene="lpxK"
                     /locus_tag="OQP62_001203"
     CDS             7999..8976
                     /gene="lpxK"
                     /locus_tag="OQP62_001203"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HCS1720800.1"
                     /translation="MIARIWSGESPLWRLLLPLSWLYGLVSGAIRLSYKLGLKRAWRA
                     PVPVVVVGNLTAGGNGKTPVVIWLVEKLQQRGVRVGVVSRGYGGKAAAYPLLLTPETT
                     TAEAGDEPVLIYQRTGAPVAVAPERAAAVKAILAAHNVQIIITDDGLQHYRLARDIEI
                     VVIDGVRRFGNGWWLPAGPMRERASRLKTVDAAIVNGGVARAGEIPMQLAPGLAVNLR
                     TGARCDVAQLSNIVAMAGIGHPPRFFATLEACGAHPQKCVPLADHQTLAPADVQALVG
                     EGQTLVMTEKDAVKCRAFAEDNWWFLPVDARLSGEQPDKLLEHITSLVR"
     gene            9020..10252
                     /locus_tag="OQP62_001204"
                     /pseudo
     CDS             9020..10252
                     /locus_tag="OQP62_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459961.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YcaQ family DNA glycosylase"
     gene            10304..10486
                     /gene="ycaR"
                     /locus_tag="OQP62_001205"
     CDS             10304..10486
                     /gene="ycaR"
                     /locus_tag="OQP62_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YcaR"
                     /protein_id="HCS1720801.1"
                     /translation="MDHRLLEIIACPVCNGKLWYNQEQQELICKLDNLAFPLRDGIPV
                     LLENEARALTSDESKS"
     gene            10483..11229
                     /gene="kdsB"
                     /locus_tag="OQP62_001206"
     CDS             10483..11229
                     /gene="kdsB"
                     /locus_tag="OQP62_001206"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HCS1720802.1"
                     /translation="MSFVVIIPARFSSTRLPGKPLVDINGKPMIVHVLERARESGAER
                     IIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCGFTDDTVIVNVQGDEP
                     MIPAVIIRQVAENLAQRQVGMATLAVPIHSAEEAFNPNAVKVVLDAEGYALYFSRATI
                     PWDRDRFAKSLETVGDTCLRHLGIYGYRAGFIRRYVSWQPSPLEHIEMLEQLRVLWYG
                     EKIHVAVAKAVPGTGVDTADDLERVRAEMR"
     gene            11440..12333
                     /locus_tag="OQP62_001207"
     CDS             11440..12333
                     /locus_tag="OQP62_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbJ family phosphotransferase"
                     /protein_id="HCS1720803.1"
                     /translation="MEQLRAELSHLLGEKLSRIECVNEKADSALWSLYDSQGNPMPLM
                     ARSFTTPGVAQQLAWKTSMLARSGTVRMPVIYGVLTHEEHPGLDVLLLERLRGVPVEA
                     PARTPERWEQLKDQIVEGLLAWHRQDSRGCVGAVDHTQENIWPSWYRQRVEVLWTTLN
                     QFSNTGLTMQDKRILFRTREYLPSLFEGFNDNCVLVHGNFCLRSMLKDARSDQLLAMV
                     GPGLMLWAPREFELFRLMDNPLAEGLLWHYLQRAPVAESFIWRRWLYVLWDEVAQLVN
                     TGRFNRTNFDLAAKSLLPWLA"
     gene            complement(12313..13089)
                     /gene="elyC"
                     /locus_tag="OQP62_001208"
     CDS             complement(12313..13089)
                     /gene="elyC"
                     /locus_tag="OQP62_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope biogenesis factor ElyC"
                     /protein_id="HCS1720804.1"
                     /translation="MLFTLKKVIGGMLLPLPLMLLIIGIGLALLWFSRFQKTGKVFIS
                     VGWLALLLLSLQPVSDHLLRPIENRYPTWQGPQKVEYIVVLGGGYTWNPQWAPSSNLI
                     NNSLPRLAEGIRLWRANPGARLIFTGGVAKTNTVSTAEVGARVAQSLGVPRSDIITLD
                     KPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQHAGLNPLPAPANQLAIDSPL
                     NPWERAIPSPVWLMHSDRAGYETLGRLWQWLKGISGKPGE"
     gene            13225..14028
                     /gene="cmoM"
                     /locus_tag="OQP62_001209"
     CDS             13225..14028
                     /gene="cmoM"
                     /locus_tag="OQP62_001209"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine 5-oxyacetic acid(34)
                     methyltransferase CmoM"
                     /protein_id="HCS1720805.1"
                     /translation="MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLEEIGGR
                     KLRVLDAGGGEGQTAIKMAERGHQVTLCDLSGEMIARARQAAEAKGVSKDMHFIQCPA
                     QDVASHLESPVDLILFHAVLEWVADPVGVLETLWSVLRPGGALSLMFYNANGLLMHNM
                     VAGNFDYVQAGMPKRKKRTLSPDYPRDPAQVYQWLEAIGWQITGKTGVRVFHDYLREK
                     HQQRDCYETLVELETRYCRQEPYISLGRYIHVTAIKSPALAADARITYE"
     gene            14021..15343
                     /gene="mukF"
                     /locus_tag="OQP62_001210"
     CDS             14021..15343
                     /gene="mukF"
                     /locus_tag="OQP62_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukF"
                     /protein_id="HCS1720806.1"
                     /translation="MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLD
                     GEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYR
                     LTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAAAEGGDEFHWHRNVYAPL
                     KYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL
                     QDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIG
                     YDRHVHKFIRTAIDMDKNRIFAQRLRQSVQTYFDDPWALTYANADRLLDMRDEEMALR
                     DDEVTGELPPDLEYEEFNEIREQLAAIIEEQLAIYKTRQTPLDLGLVVREYLAQYPRA
                     RHFDVARIVIDQAVRLGVAQADFTGLPAKWQPINDYGAKVQAHVIDKY"
     gene            15324..16028
                     /gene="mukE"
                     /locus_tag="OQP62_001211"
     CDS             15324..16028
                     /gene="mukE"
                     /locus_tag="OQP62_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukE"
                     /protein_id="HCS1720807.1"
                     /translation="MSLTNIEQVMPVKLAQALANPLFPALDSALRSGRHIGLDELDNH
                     AFLMDFQEYLEEFYARYNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMMVGKILCYL
                     YLSPERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLN
                     RLRRLGMVWFMGHDSSKFRITESVFRFGADVRAGDDPREAQRRLIRDGEAMPIENHLQ
                     LNDETEESQPDSGEEE"
     gene            16028..20494
                     /gene="mukB"
                     /locus_tag="OQP62_001212"
     CDS             16028..20494
                     /gene="mukB"
                     /locus_tag="OQP62_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukB"
                     /protein_id="HCS1720808.1"
                     /translation="MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTM
                     AAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVV
                     GVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLSLAELKDKLDEM
                     EGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLR
                     DYLLPENSGVRKAFQDMEAALRENRLTLEAIRVTQSDRDLFKHLISEATDYVAADYMR
                     HANERRVHLDQALAFRRELYTSRKQLAAEQYKHVDMARELGEHNGAEGSLEADYQAAS
                     DHLNLVQTALRQQEKIERYEADLEELQIRFEEQNEVVAEAAEMQDENEARAEAAELEV
                     DELKSQLADYQQALDVQQTRAIQYNQAISALARAKELCHLPDLTPESAAEWLDTFQAK
                     EQEATEKLLSLEQKMSVAQTAHSQFEQAYQLVAAINGPLARSEAWDVARELLRDGVNQ
                     RHLAEQVQPLRMRLSELEQRLREQQEAERLLAEFCKRQGKNFDIDELEALHQELEARI
                     ASLSESVSSASEQRMALRQEQEQLQSRIQHLMQRAPVWLAAQNSLNQLSEQCGEEFTS
                     SQEVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGAEDQRLNALAERFG
                     GVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQIAEQLEGLTDCPEDLYLIEGD
                     PQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPSLPIFGRAARENRIESLHAEREVLS
                     ERFATLSFDVQKTQRLHQAFSRFIGSHLSVAFEDDPEAEIRRLNGRRVELERALATHE
                     SDNQQQRLQFEQAKEGVSALNRLLPRLNLLADETLADRVDEIQERLDEAQEAARFVQQ
                     YGNQLAKLEPMVSVLQSDPEQFEQLKEDYAWSQQMQRDARQQAFALAEVVERRAHFSY
                     SDSAEMLSGNSDLNEKLRQRLEQAEAERTRAREALRSHAAQLSQYSQVLASLKSSYDT
                     KKELLNDLQRELQDIGVRADSGAEERARQRRDELHAQLSNNRSRRNQLEKALTFCEAE
                     MENLTRKLRKLERDYHEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAYLSADEL
                     RSMSDKALGALRLAVADNEHLRDVLRLSEDPKRPERKIQFFVAVYQHLRERIRQDIIR
                     TDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRMLNQGL
                     QSVSFGQVNSVRLNVNVRETHATLLDVLSEQQEQHQDLFNSNRLTFSEALAKLYQRLN
                     PQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSIL
                     VMVVQSWEDEARRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPE
                     NISPEKGTTYKLVRKVFQNTEHVHVVGLRGFAPQLPETLPGTQAEDTPSEAS"
     gene            20839..22686
                     /gene="ldtD"
                     /locus_tag="OQP62_001213"
     CDS             20839..22686
                     /gene="ldtD"
                     /locus_tag="OQP62_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HCS1720809.1"
                     /translation="MLLNKMCGRCLSAISLCLAVTFAPLFNAQADEPEMIPGDSAVAA
                     TGQAGPQKQSAATAILAGIQPLPEGVSAEKVRADLQSQLPSGYTPVYMSQLTLLYAAR
                     DMKPMWDNRDAVKAFQQQLAEVAIAGFQPQFTAWVALLTAPAVNGMARDVVLSDAMMG
                     YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQY
                     APMHDALLKLVADSRPWPQLTNTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG
                     DNTSDSAVVSPSAVVDETSVAQPVDEPTARRSKPAPAARAYDRELVEAVKRFQAWQGL
                     GADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELSTGIMVNIPAYSLVYYQNG
                     NQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERH
                     GYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYL
                     HDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDAGWNDARISGALKQGDTRYVNI
                     RQNIPVNLYYLTAFVGADGRMQYRTDIYNYDLTARSSAQIVPKVEQLIR"
     gene            22946..23494
                     /locus_tag="OQP62_001214"
     CDS             22946..23494
                     /locus_tag="OQP62_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HCS1720810.1"
                     /translation="MDKFDANRRKLLALGGVALGAAILPSPAFATLSTPRPRILTLNN
                     LHTGESIKAEFFDGRAYIQDELAKLNHFFRDYRANKVRSIDPRLFDQLYRLQGLLGTR
                     KPVQLISGYRSLDTNNELRARSSGVAKKSYHTKGQAMDFHIEGVALSNIRKAALSMRA
                     GGVGYYPRSNFVHIDTGPARHW"
     gene            23522..24169
                     /locus_tag="OQP62_001215"
     CDS             23522..24169
                     /locus_tag="OQP62_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003035823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HCS1720811.1"
                     /translation="MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDA
                     SGVTLMQILLTHGHLDHVGAASELAQHYGVPVIGPEKEDEFWLQGLPAQSRMFGLDEC
                     QPLTPDRWLNDGDRVSVGNVTLQVLHCPGHTPGHVVFFDEQSQLLISGDVIFKGGVGR
                     SDFPRGDHTQLIDAIKRKLLPLGDDVTFIPGHGPLSTLGYERLHNSFLQDEMPVW"
     gene            complement(24231..25421)
                     /gene="aspC"
                     /locus_tag="OQP62_001216"
     CDS             complement(24231..25421)
                     /gene="aspC"
                     /locus_tag="OQP62_001216"
                     /EC_number="2.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009653304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate transaminase"
                     /protein_id="HCS1720812.1"
                     /translation="MFENITAAPADPILGLADLFRADDRPGKINLGIGVYKDETGKTP
                     VLTSVKKAEQYLLENETTKNYLGIDGIPEFARCTQELLFGKGSALINDKRARTAQTPG
                     GTGALRIAADFLAKNTPVKRVWVSNPSWPNHKSVFNAAGLEVREYAYYDAENHSLDFE
                     ALQASLSEAQAGDVVLFHGCCHNPTGIDPTLEQWQVLAELSVEKGWLPLFDFAYQGFA
                     RGLEEDAEGLRAFAALHKELIVASSYSKNFGLYNERVGACTLVAADAETVDRAFSQMK
                     SAIRANYSNPPAHGASIVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA
                     NRDFSFIIKQNGMFSFSGLTKDQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAI
                     VAVL"
     gene            complement(25606..26670)
                     /gene="ompF"
                     /locus_tag="OQP62_001217"
     CDS             complement(25606..26670)
                     /gene="ompF"
                     /locus_tag="OQP62_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000769035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpF"
                     /protein_id="HCS1720813.1"
                     /translation="MIPALLAAATANAAEIYNKDGNKLDLYGKAVGRHVWTTTGDSKN
                     ADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVG
                     SIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVD
                     GLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGN
                     GDRAESWAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQF
                     DFGLRPAISYVQSKGKQLNGADGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDEND
                     YSSSYVGTDDQAAVGITYQF"
BASE COUNT         6069 a         6793 c         7678 g         6133 t
ORIGIN      
        1 actgtccgat gcggatgtta aagcattatc taataatgcc tgtaaacaaa tggacagcga
       61 gaatcaactg gcaggttcga aaagcaaata caccaaacgt ctgagtaaaa tcgctaaagc
      121 gctgggtaac aacattgacg gtacgccggt tagctataaa gtctatatga ccagcgatat
      181 caacgcatgg gcgatggcga acggttgcgt tcgcgtatac tccggcctga tggatctgat
      241 gaccgataat gaaattgaag gcgtactggg ccatgaactg ggccatgtct ctttagggca
      301 ctcccgcaag gcaatgcaga ccgcctatgc cacgctggcg gctcgcgatg cgatttccgc
      361 caccagcggc gtcgcagcgc agctttccca gtctcaattg ggcgatctgg cggaaggcgt
      421 catcaatttg gcgttttctc gcagtcagga gtcggatgcg gatgacttct cttacaatct
      481 gctgaaaaaa cgtgggatta acacccaggg cttagtcacg gcattcgata aattcgccat
      541 aatggacgca ggtcatgcaa aatcattgat ggactcccac ccggcctcag ccgatcgcgc
      601 gcagcatatg cgcgacagaa ttgccgaaga taaaaagtaa atcattgtca tctttcgggc
      661 tggtttctcg ccagcccgct ataattgcgc aattattccg catctgatta cagacaaaac
      721 tggtttttgc acgcaacgtt aacggtcgcg agcgttggcg cgtataatgc gcggcgttta
      781 cgttaacggt acgcctgttt aaggagataa agatgacggc aattgccccg gtaataacca
      841 ttgatggccc aagcggtgca ggtaaaggca ccttgtgcaa agcaatggcg gaagcattgc
      901 aatggcatct gctggattcc ggcgcgatat accgcgtact ggcgctggcg gcattgcacc
      961 accatgtcga tctcgcctct gaagatgcgc tggtgccgct ggcgtcccat ctggacgtgc
     1021 gtttcgtctc aacggacggc aacctggaag ttatcctgga aggcgaggac gttagcggcg
     1081 aaattcgtac gcaggaagtc gcgaacgcgg catcccaggt ggcggcattc ccacgcgtgc
     1141 gtgaagcgct tcttcgccgc caacgcgcat tccgcgaagc gcctggttta atcgccgatg
     1201 gacgcgatat ggggaccgtg gtcttcccgg atgcgccggt aaaaattttc cttgacgcct
     1261 cctcggagga acgtgcgcat cgacgtatgc tacagttgca ggagaatggc tttagtgtta
     1321 actttgaacg ccttttggcc gagatcaagg aacgcgacga tcgcgatcgt aatcgcgctg
     1381 tagcgccgtt agttcctgct gctgatgcat tagttttgga ttctacccga ttaagcattg
     1441 agcaagtgat tgaaaaagcg ttacaatatg cgcgccaaaa attggctctc gcttaaatgc
     1501 gaccgaattt gtagtacccc cgttgcaaag gattgacagc gggtatgtta aacaacccca
     1561 tccggcacgg agccaggtgg acgttaaata tgaaacctga agattaaaca tgactgaatc
     1621 ttttgctcaa ctctttgaag aatccttaaa agaaatcgaa acccgcccgg gttccatcgt
     1681 tcgtggtgtt gttgttgcta tcgacaaaga cgtagtactg gttgacgccg gtctgaaatc
     1741 tgagtctgcc attccggctg agcagttcaa aaacgcccag ggcgaactgg aaatccaggt
     1801 tggtgacgaa gttgacgttg ctctggatgc agtagaagac ggcttcggtg aaactctgct
     1861 ctctcgtgag aaagctaaac gtcacgaagc atggatcacg ctggaaaaag cttacgaaga
     1921 tgctgaaact gttaccggtg ttatcaacgg caaagttaag ggtggcttca ctgttgagct
     1981 gaacggtatt cgcgcgttcc tgccaggttc tctggtagac gttcgtccgg tgcgtgacac
     2041 tctgcacctg gaaggcaaag agcttgaatt caaagtaatc aagctggacc agaaacgtaa
     2101 caacgttgtg gtttctcgtc gtgccgttat cgaatccgaa aacagcgcag aacgcgatca
     2161 gctgctggaa aacctgcagg aaggcatgga agttaaaggt atcgttaaga acctcactga
     2221 ctacggtgca ttcgttgatc tgggcggcgt tgacggcctg ctgcacatca ctgatatggc
     2281 ctggaaacgc gttaagcatc cgagcgaaat cgtgaacgtt ggcgacgaaa tcaacgtgaa
     2341 agtgctgaaa ttcgaccgcg agcgtacccg tgtatccctg ggcctgaaac agctgggcga
     2401 agatccgtgg gttgctatcg ctaaacgtta tccggaaggt accaaactga ccggtcgcgt
     2461 gaccaacctg accgactacg gctgcttcgt tgaaatcgaa gaaggcgttg aaggcctggt
     2521 tcacgtttcc gaaatggact ggaccaacaa aaacatccac ccgtccaaag tggttaacgt
     2581 tggcgacgta gtggaagtga tggttctgga tatcgacgaa gaacgtcgtc gtatctcctt
     2641 agggttgaag cagtgcaaat ctaacccgtg gcagcagttc gcagaaaccc acaacaaggg
     2701 cgaccgcgtt gaaggtaaaa tcaagtctat cactgacttc ggtatcttca tcggcctgga
     2761 cggcggcatc gacggcctgg ttcacctgtc tgacatctcc tggaacgttg caggcgaaga
     2821 agcagttcgt gaatacaaaa aaggcgacga aatcgctgca gttgttctgc aggttgacgc
     2881 agaacgtgaa cgtatctccc tgggcgttaa acagctcgca gaagatccgt tcaacaactg
     2941 ggttgctctg aacaagaaag gcgctatcgt aaccggtaaa gtcactgcag ttgacgctaa
     3001 aggcgcaacc gtagaactgg ctgacggcgt tgaaggttac ctgcgtgctt ctgaagcatc
     3061 ccgtgaccgc gttgaagatg cgactctggt tctgagcgtt ggcgacgacg ttgaagctaa
     3121 attcaccggc gttgatcgta aaaaccgcgc aatcagcctg tctgttcgtg cgaaagacga
     3181 agctgacgag aaagatgcca tcgcaactgt taacaagcag gaagatgcaa acttctctaa
     3241 caacgcaatg gctgaagcat tcaaagcagc taaaggcgag taatcctctg aaacttcggg
     3301 ccttttagtc cgaagtataa cgagattact tgacagattg caggtttcgg cctgtaatca
     3361 agcactaagg gcggctacgg ccgcccttaa tcaatctcac ggctgcagcc aatttgcctt
     3421 taaggaaccg gaggaatcat gaccaagtca gaattgattg aaagacttgc aacccagcaa
     3481 tctcacattc ccgctaaggc ggttgaagac gcggtaaaag agatgctgga gcatatggcc
     3541 tcgactcttg cgcagggcga gcgtattgaa atccgcggtt tcggcagttt ttctttgcat
     3601 taccgcgcgc ctcgtaccgg acgtaacccc aagaccggcg ataaagtgga actggaagga
     3661 aaatacgttc ctcactttaa accgggtaaa gaactgcgcg atcgcgccaa tatttacggt
     3721 taagttttaa cgcaaaactt gaacccgaaa aaagcaccgt cagggtgctt ttttcattta
     3781 tacgccgtca ggcgcaaacg ctattcgacc gaaaactgga aaacgtttcg cattttttgc
     3841 tgcgtcttac atttatcagg taaaaaacct ggaatccgcg ccgtatagca caaaatcccc
     3901 tccagacaat ggcgtcctga acctgcacac tttcccgcac agggaggtgt ctatgaagat
     3961 aacgacggtc agcgtatgcg tagtatgcgg catacttccg ctcatgatat tgccagtatt
     4021 acctgatacg tggattctcg cggtgctgtt ttgtctggca tgtttgcttt gcctcatacc
     4081 ccatcactat gcgcgctacg cggcattaac cttgctcttt ttcatgtggg ggatttttgc
     4141 cgccaggcag gccatctggg tgggaaacgt cctgcccgcc gcgacgcagg aggcgacagt
     4201 cgtcattact gccaccgatc atatgaccac tcattatggg cgaattaccc atttgcatgg
     4261 aaagccactc tttcctgctg tagggattgt cctgcatggc cagtacttac ccacggaagt
     4321 gtgtgccgga cagcagtggg cgatgacgct gaaggtcaga gcggtacacg gacagcttaa
     4381 cgaaggcggt tttgatagcc agcgttacgc gctggcgcag caccaaccgt tgaccgggcg
     4441 ttttctacag gctaaagcga ttaaccctga gtgtagcttg cgtgggcgct atcttgcttc
     4501 gcttcgcgct acgcttgcgc cttatccgtg gcagcaggtt attctggcgt tgggaatggg
     4561 ggagcgggga gcggtgtcgc aggaggtgaa ggccgttatg cgcgatacgg ggactgccca
     4621 tttgatggcg atttccggcc tgcatatcgc ttttgctgcg ttattggctg ccggattaat
     4681 ccgtggcgga caattctttt tgccggtcag atggattcgt tggcagacgc cattgctggg
     4741 cggcattctt tgcgcgatat gttatgcctg gcttaccggc ttacaaccgc ctgcgctgcg
     4801 cacggtggcg gcactgagcg tctggggagg attgaaatta agcggacgac agtggagcgg
     4861 ctggcaagtc tggtgctgct gtctggccgc gattattttc gccgatcctg tggcggttat
     4921 atcacaaagt ctttggctgt cagcatttgc ggttgccggc ctgttattct ggtatcagtg
     4981 gtttcctgcg ccaaacggaa attttccacg aggcttacgc tggttgctta acctgcttca
     5041 cctacaggca ggcattacac ttctgctttt gcctctccag gtggcgcttt ttcatggcat
     5101 aagcgttacc gcaatgctgg cgaatctttt tgccgtacct tgggtcacat ttgtgacggt
     5161 tccactcatc ctggcgggaa tgattctgca tttaaccggg ccgttttttc ttgaagagtg
     5221 ggtatggtac ctgaccgatc gcgcgttagc cgcgctattt tacctgttga atgctttacc
     5281 gcagggctgg gtgaatattg ataaccgttg gcagtggctg acgcttttac cctggctaac
     5341 gcttatcgcg tggcgattaa acgtctggcg tacctggccg gcggtctgtt tatgcgggtt
     5401 attgttgatg agctggccac tctggcggcc gataaacgcc agcggatggc aggtgcatat
     5461 gctggatgtc ggtcaggggc tggcgatagc gatcgtcagg ggcgataaag taatactcta
     5521 cgataccggt cgggcatggc cggagggcga cagcgggcaa caggttatta ttccctggtt
     5581 gcgctggcat aatctgacgc cggagggcgt tattttgagt catgagcatc tggatcatcg
     5641 gggcgggctg cgttcgctac agcaggtctg gccgtcaatg tggattcgca gcccgttagg
     5701 ctggcaggga catttgccct gttttcgcgg cgagcagtgg caatggcagg ggctaacgtt
     5761 tcaggcgcac tggccgttac gcgaaagtgc cgatcgagga aataaccgtt cttgtgtggt
     5821 caaagtggat gacggtgtac atagcatcct gctcacgggc gatatcgaag cgggcgctga
     5881 acaaaaaatg ctaagtcgtt actggcgaca tcttgcggcg acgtttatcc aggtgccgca
     5941 tcatggtagt aatacgtcgt cgtcgttacc atttattcag cgcgtacatg gtgaagcggc
     6001 gctggcgtcc gcatcgcgct ataacgcatg gcggctgccg tcccgcaagg taaaacagcg
     6061 ctaccgacag caggcgtatc agtggtttga tacaccccac caggggcaaa tttcgctgct
     6121 gttttctccg cagggctggc gcatacaagg cttacgggat caaattttac ctcgctggta
     6181 tcatcagtgg tttggcgtgt ccgaggataa cgggtagaat atgcggctat ttcaacaaat
     6241 gctggttttt tgaatgcata acgataaaga tctctctacg tggcagacct tccgccgact
     6301 gtggccaacc atagcgcctt ttaaagcagg tctgatcgtg gcgggcatag cgttaattct
     6361 caacgcagcc agcgatacct tcatgctatc gctcctcaag ccattactgg atgatggttt
     6421 cggtaaaacg gatcgctcag tgttgctgtg gatgccgctg gtggttattg ggctgatgat
     6481 attacgaggc atcactagct atatctccag ctactgtatt tcatgggtgt caggcaaggt
     6541 ggtaatgacc atgcgccgtc gcctgtttgg ccatatgatg ggaatgcccg tcgccttctt
     6601 tgataaacag tctaccggta cgctgctgtc gcgtattaca tacgattcag aacaggttgc
     6661 ctcttcttca tctggcgcgc tgattaccgt ggtgcgtgaa ggggcatcga tcatcggatt
     6721 gtttattatg atgttctatt acagctggca gctgtcgatc atcctggttg ttttagcgcc
     6781 gattgtgtcg attgcgattc gcgttgtctc aaagcggttc cgcagcatca gtaaaaatat
     6841 gcagaacacg atgggacaag tgactaccag cgctgaacaa atgctgaaag gacacaaaga
     6901 ggtactgatt ttcggcggtc aggaagtcga aactaaacgc tttgataaag tcagcaataa
     6961 gatgcgactg caaggcatga aaatggtctc tgcctcgtca atttccgatc ctatcattca
     7021 gctcattgcc tcgctggcgc tggcgtttgt tctctatgct gcgagcttcc caagcgtaat
     7081 ggatagcctg acggcaggga ccatcacggt ggtgttctcc tccatgatcg cgctgatgcg
     7141 tccattaaaa tcgctgacaa acgttaacgc gcagttccag cgtgggatgg cggcttgtca
     7201 gacgttgttt gcgattctgg acagcgaaca ggagaaagat gaaggtaaac gtgtcattga
     7261 ccgcgcgacc ggcgatctcg aattccgcaa tgtgacgttt acttacccgg gccgtgaagt
     7321 gccggcattg cgtaacatca atttgaaaat tcctgccggg aaaaccgtgg cgctggtggg
     7381 gcgttccgga tcgggtaaat caactatcgc cagtctgatc acccgtttct acgatattga
     7441 tgaaggacac atcctgatgg atggtcacga tctacgcgaa tacactctgg cctctctacg
     7501 taatcaggtg gcgctggttt cgcaaaacgt gcatctgttt aacgacacgg tcgccaataa
     7561 cattgcttat gcccggacgg aagaatacag ccgcgagcag attgaagagg cggcgcgcat
     7621 ggcctatgcc atggacttta tcaacaagat ggataatggt ctggatacca ttatcggcga
     7681 aaacggcgta ctgctttccg gcggtcagcg ccagcgtatc gcgattgccc gcgccttact
     7741 gcgcgacagc ccgattctga tccttgatga agctacgtcc gcgctggata ccgagtccga
     7801 acgtgcgatt caggccgcgt tggatgagct gcaaaaaaac cgtacctctc tggtgattgc
     7861 gcaccgtctc tccaccatcg aacaggcgga tgagatcgtt gtagtcgaag acggtattat
     7921 cgttgagcgc ggcactcata gcgagctgct ggcgcaacac ggcgtttacg cccagctgca
     7981 taagatgcaa tttggccaat gattgcgcgt atctggtcgg gtgaatcccc gctatggcgg
     8041 ttactgctgc cgctctcctg gctgtatggc ctggtgagcg gggcgattcg tctgagctat
     8101 aagcttggtt tgaaacgcgc ctggcgagcg ccggtaccgg tggttgtggt agggaatctt
     8161 acggctggcg gtaacggtaa aacacccgta gtcatttggc tggtggaaaa gctgcaacag
     8221 cgtggcgtgc gcgtgggggt cgtttcccgc ggctacggcg ggaaagctgc cgcttatccg
     8281 ctgctcctga cgcctgagac gacaaccgca gaagcgggag atgaaccggt attgatttat
     8341 cagcggaccg gcgcgcctgt cgcggtggcg cctgaacgcg ccgcggcggt gaaagcgatt
     8401 ctggcggcgc ataatgtgca gattattatc accgacgatg ggttgcagca ttaccgacta
     8461 gcgcgagata ttgaaattgt ggtgattgac ggggtgcgcc gttttggcaa cggctggtgg
     8521 cttcctgccg gccctatgcg cgaacgcgcc agtcgcctga aaaccgtgga cgccgctatc
     8581 gtgaatggcg gcgtcgcccg ggcgggcgaa atccccatgc agctagcgcc tggactggcg
     8641 gtgaacttac gtacgggagc gcgttgcgat gtggcgcaac tgagcaatat tgtggcgatg
     8701 gcgggcatcg gtcatccgcc gcgctttttc gccacgctgg aagcctgtgg cgcgcatccg
     8761 caaaagtgcg tcccgctggc cgatcatcaa acgctcgccc ctgctgacgt tcaggcgttg
     8821 gtcggtgaag ggcagaccct ggtaatgacg gaaaaagacg cggtgaaatg ccgtgctttc
     8881 gccgaagata actggtggtt cttaccggtt gatgcgcgtt tgtccggcga gcagcctgat
     8941 aagttgcttg aacatatcac ctcgctggtt cgctagcgta ccccaatgca gcggcagtga
     9001 tgaatttatg gagtcatgaa tgtcattgcc gtacctttct ctttcccagg cccgttgtct
     9061 tcaccttgct gcgcaggggc tattgaaaaa gccgcgccgt aacgcgatgc ctggcgatgt
     9121 tcttgccgcc atctcacgca tggcgttgct gcaaattgat accatcaatg ttgtcgcacg
     9181 tagcccctat ctggtgctgt ttagccgtct cggttcgtac ccgcaggcct ggctggatga
     9241 ggcgctgcga cgcggcgagt taatagaata ctgggcgcat gaggcctgtt tcttaccacg
     9301 ccgcgacttt aaacttatcc gccatcgtat gctgtcgccg gaaaaaatgg gctggaaata
     9361 tcgcgcggca tggatgcatg agcacgcgga agaaatagaa cagctggtgc ggcatattca
     9421 ggagcatggt ccggtgcgtt ctgccgattt tgaacatgcg cagaaaggcg tcagcggctg
     9481 gtgggaatgg aaaccacata aacgccacct tgagggttta tttaccgccg gaaaagtcat
     9541 ggttgttgag cggcgtaatt ttcaacgtgt atatgattta acgccccgtg tgatgccgca
     9601 ctgggatgat gaacgcgatg gactgtcaca gccgcaggcg gaaagcctga tgctggataa
     9661 tagcgcgcgc agtctgggga ttttccgtga acagtggctg gcggattact accgcctgaa
     9721 acgtcctgac ctgaaaggat agcgggagag ccgggcggaa cagcagcaga ttattccggt
     9781 cgaggtggaa acgttggggc ggatgtggct tcatgccgat cttctttcgc agcttgaacc
     9841 ggcgctaaat aacgccttaa aggcgaccca tagcgcagta ctgtcgcctt tcgatcctgt
     9901 ggtatgggat cgtaagcggg cagcgcagct cttcgcattc gactaccggc tggaatgtta
     9961 tacgcccgcg gcgaagcgcc agtacggtta ttttgtgctg ccgctattat accagggccg
    10021 tttagtcggg cgaatggacg ccaaaatgca ccgtaaaacg ggggtgcttg aggttatctc
    10081 gctgtatctg gaggacgata ttcgccctgg cgttagtctg caaaaaggaa tctggcaggc
    10141 cattagcgcg tttgctgcct ggcaacgagc atcgcgcgtg acgctgggac aatgtccgcc
    10201 aggcctgttt agcgccatgc gtcatggctg ggaaatagac cctgcaccat aaccgattat
    10261 gttaatattg aaggattcac aatccggtcc atctggagga actatggatc atcgtctgct
    10321 tgaaatcatc gcctgcccgg tatgtaacgg caaactctgg tataaccagg aacagcaaga
    10381 attaatttgc aaactggata atctcgcttt cccgttacgc gacggcattc ctgtattgct
    10441 ggaaaatgaa gctcgcgccc tgacatctga tgagagtaaa tcatgagttt cgtcgtcatc
    10501 attccggccc gtttttcatc tacccgactg ccaggcaaac cattagtgga tattaatggt
    10561 aaacccatga ttgttcatgt cctggagcgg gcgcgcgaat ctggcgcgga acgcattatt
    10621 gtcgcgaccg atcatgaaga cgtggctcgt gcggtagaag cggctggcgg cgaagtgtgc
    10681 atgacgcgcg ccgatcacca gtccggcacc gaacggttgg cggaagtggt agagaagtgc
    10741 ggattcaccg acgataccgt tattgtgaac gttcagggcg atgagccgat gatcccggcg
    10801 gttattattc gccaggtcgc ggaaaatctg gcgcagcgcc aggttggcat ggcgacgctg
    10861 gcggtgccga ttcacagcgc cgaagaagcg tttaacccga atgcggtaaa agtcgtgctg
    10921 gatgctgaag gctatgcgct ttacttttcc cgggcgacga ttccctggga tcgcgatcgc
    10981 tttgcaaaaa gtctggaaac ggtaggggat acttgccttc gtcacctggg catttatggc
    11041 tatcgcgcgg gatttatccg ccgttacgtg agctggcaac ccagcccgct ggaacatatt
    11101 gaaatgctgg agcaactccg tgtgctgtgg tacggcgaaa aaattcatgt cgctgtcgcc
    11161 aaagcggtgc ccggcacggg cgtagacacc gccgacgacc tggagcgcgt gcgcgctgaa
    11221 atgcgttaac atgatcctgt tcatgatcgt cttagacggt catgaacagc gcggtatgat
    11281 agcgcaaaga tgaatactca cgtctgctca tcagtggcgg ctttctcgta ccgttacgat
    11341 tttcctcatt tttcttttct tcccttgatc tgatacgggt gacatctgtc catacgacgc
    11401 tcattattaa agcagtagca ctaatggggg taatctggaa tggaacagtt gcgggccgaa
    11461 ctcagtcatt tgttgggtga aaaacttagc cgtatagagt gcgtgaatga gaaagcggat
    11521 tccgcattgt ggtcattata tgacagccag ggaaatccga tgccgctgat ggcgcgaagt
    11581 tttaccactc ctggcgttgc gcagcaactg gcatggaaaa cctcaatgct ggcgcgtagc
    11641 ggtacggtga ggatgccggt aatctatggc gtattgacgc atgaagagca tcctggtctg
    11701 gatgtgctgc tactggaacg actgcgcggt gtgccggtcg aggcgccggc gcgcactccg
    11761 gaacgctggg aacagctaaa agatcagatt gtcgaaggat tgttagcctg gcatcggcag
    11821 gatagccgcg gttgcgtggg cgccgtagac catactcagg agaatatctg gccttcctgg
    11881 tatcgtcagc gtgtggaggt gctgtggacg acgctaaatc agttcagcaa taccggcctg
    11941 acgatgcagg acaaacgcat tctgtttcgt accagagaat atcttccttc gttatttgaa
    12001 gggtttaacg acaactgcgt actggtgcat ggcaacttct gcttgcgcag tatgcttaaa
    12061 gacgcccgta gcgatcagct tctggcgatg gtcggccccg ggctgatgct gtgggcgccg
    12121 agagaattcg aactgtttcg cctgatggat aatccattgg cggagggatt gctttggcat
    12181 tatctgcaac gcgcgccagt ggcggagtca ttcatctggc ggcgttggct ctatgtgctg
    12241 tgggacgagg ttgcgcaatt ggtcaatacc ggacgtttta accgtaccaa ttttgatctg
    12301 gcggcgaaat cattactccc ctggcttgcc tgatatgcct ttcagccatt gccaaagtcg
    12361 ccctaatgtt tcatacccag cgcgatcgct gtgcatcagc cagaccgggg acggaattgc
    12421 ccgctcccag ggattgagcg gcgaatcgat cgccaactga ttcgccggcg cgggaagcgg
    12481 attcagcccg gcatgctgaa agaaaatcat cgcacgcggc aaatgcgagg cggaggttac
    12541 cagcaggaaa ggggcgtcgc cgatggcctg cttaacggcg gcggcttctt cttccgtatc
    12601 ttttggctta tccagcgtaa taatatcgct acgcggtacg cccagcgact gcgccacccg
    12661 cgcgccgact tccgccgtgc ttaccgtatt ggtttttgct acgccgccgg taaaaatcag
    12721 cctggctccc ggattcgcgc gccacagccg aatgccttcc gccagccgcg gcaagctgtt
    12781 gttaattaaa ttagagctcg gcgcccactg cgggttccag gtatagccgc cgccgagaac
    12841 cacaatatat tccacctttt gcggaccctg ccaggtaggg tagcggtttt ctatcggacg
    12901 cagcaaatgg tcagagacgg gttgcaggct taatagcaat agcgccagcc aacctacgct
    12961 gataaatact tttccggtct tctgaaagcg gctaaaccag agcagcgcca ggccgatgcc
    13021 aatgatcagc aacatcagcg gaagcggcaa taacatgccg ccaatcactt tctttagcgt
    13081 aaaaagcatc ctttttggtt ccttttttaa ccatatagcg gaggattaac ggtgatatta
    13141 caccagacag gttcattctc gccgcggctg tgacaaaata gcggttttat cagataacgc
    13201 ctgagccagc ctgtggagag tccgatgcag gatcgcaatt ttgatgacat tgctgaaaag
    13261 ttttcccgta acatttacgg cacgaccaaa gggcaactgc ggcaagccat tctgtggcaa
    13321 gacctggatc gcgtgctgga ggagattggc gggcggaaac tgcgggtgct ggatgccggc
    13381 ggcggcgaag ggcaaacggc gattaagatg gcggaacgcg gccatcaggt gacgttatgc
    13441 gatctgtctg gcgaaatgat cgcccgcgcg cggcaggcgg ccgaggcaaa aggtgtgagc
    13501 aaagacatgc attttataca atgcccggct caggacgtcg cttcgcattt ggaaagcccg
    13561 gttgatctga tattgtttca tgctgtgctg gagtgggtag ccgatcctgt cggcgtatta
    13621 gaaacgctct ggtcagtatt gcgccctggc ggcgcgctgt cgttgatgtt ctataacgct
    13681 aacggtttgc tgatgcacaa tatggtggcg ggtaattttg actacgtgca ggcggggatg
    13741 cctaaacgca agaagcgcac gctgtcgcct gactacccgc gcgaccccgc gcaggtgtac
    13801 cagtggctgg aggcgattgg ctggcagatt accggtaaaa ccggcgtgcg tgtgtttcat
    13861 gattatctgc gtgaaaaaca ccagcagcgt gactgttatg agaccctggt cgaactggaa
    13921 acgcgttatt gccgccagga gccgtatatt agccttgggc gctacattca tgtcaccgcg
    13981 attaaaagcc cggcgctagc cgcagatgca aggataacct atgagtgaat tttcccagac
    14041 agtccccgaa ctggttgcct gggccagaaa aaacgacttt tccatctcgc tgccggtaga
    14101 cagactttcc tttctgctgg cggtcgccac gttgaacggc gaacgccttg acggcgagat
    14161 gagtgaaggc gagctggtgg atgcattccg ccatgtgagt gatgcgtttg agcaaaccag
    14221 cgaaaccatc ggcgtgcgcg cgaacaacgc gattaacgat atggtgcgtc aacgtctgct
    14281 gaaccgcttt accagcgagc aggcggaagg caatgcgatt taccgattaa ccccgctcgg
    14341 gattggcatc accgattact acattcgtca acgcgaattc tctacgctgc gtctttctat
    14401 gcagttgtcg attgtggccg gcgaattgaa gcgcgcggcg gatgcggcag cggagggggg
    14461 cgatgagttc cactggcatc gcaatgttta cgcgccattg aaatattcgg tggcggagat
    14521 tttcgacagt atcgatctca cccagcgcat tatggatgaa cagcagcagc aggtgaaaga
    14581 cgatatcgca caactgctga ataaagactg gcgggcggcg atttccagct gtgagctgct
    14641 gctttccgaa acgtccggta cgctgcgcga gttgcaggat acgctggagg cggcgggcga
    14701 taagctgcag gctaacctgc tgcgcattca ggatgccacg atgacgcacg acgatctgca
    14761 ttttgtcgac aggctggtgt ttgacttaca aagtaaactc gaccgcatta tcagttgggg
    14821 tcagcagtct attgatttat ggatcggcta cgatcgtcac gtgcataaat ttatccgtac
    14881 cgcgatcgat atggataaaa accgtatctt cgcccagcgg ttgcgccagt ccgtgcagac
    14941 ttattttgac gatccgtggg cgctaaccta cgcgaatgcc gatcgtctgc tggatatgcg
    15001 cgatgaagag atggcgttgc gtgacgatga agtcaccggg gagttgccgc cggatctgga
    15061 atatgaagag tttaacgaga tccgcgagca gttagcggcc atcattgaag aacagctggc
    15121 tatctacaaa accagacaaa cgccactgga tcttgggctg gtggtgcgcg agtatctggc
    15181 gcaatacccg cgcgcgcgtc atttcgacgt ggcgcgtatt gttatcgatc aagcggtacg
    15241 tcttggcgta gcgcaagcag atttcaccgg actgccagcc aaatggcagc cgattaatga
    15301 ttacggagcc aaggtacagg cgcatgtcat tgacaaatat tgaacaagtg atgccggtta
    15361 agctggcgca ggcgctggcg aatccgttat ttccggcgct ggatagcgca ttacgttcgg
    15421 gccgccacat cgggctggac gaactggata atcatgcctt tctgatggat tttcaggaat
    15481 acctggaaga gttttacgcg cgttataacg tggagttgat tcgtgcgccg gaggggttct
    15541 tttacctgcg tccgcgttct accacgctta tcccgcgctc ggtgttatcc gaactggata
    15601 tgatggtcgg taaaattctc tgctacctct atcttagccc ggagcgtctg gccaacgaag
    15661 ggatctttac tcagcaggag ttgtacgacg agctgcttac ccttgcggac gaagccaaac
    15721 tgctaaagct ggtgaataac cgttcgacgg gatctgacgt tgatcgtcag aaactgcagg
    15781 aaaaggtgcg ttcttcttta aaccgcctgc gtcgtttggg catggtatgg tttatgggcc
    15841 acgacagcag caaattccgc attaccgaat cggtcttccg ctttggcgcg gatgtccgcg
    15901 ccggcgacga tcctcgcgag gcgcagcgtc gtctcatccg cgacggggaa gcgatgccca
    15961 ttgaaaacca tctgcaactt aatgatgaga ccgaagagag tcagccggac agtggagagg
    16021 aagaataatg attgaacgcg gtaaatttcg ctcgctaacg ctgattaact ggaacggttt
    16081 ttttgcccgc acttttgacc tggatgaact ggtcacgacg ttatccgggg gcaacggcgc
    16141 cgggaaatcc acgacgatgg cggcgttcgt cacggcgctg atcccggatc tcacattact
    16201 gcactttcgt aacaccacgg aagccggcgc caccagcggt tcgcgcgata aaggtctgca
    16261 cggtaagctg aaggcgggtg tctgttactc catgctcgac accattaatt cccgccatca
    16321 gcgggtggtg gtcggcgtgc gtctgcagca ggtcgctggg cgcgatcgca aagtggacat
    16381 caaaccgttc gctattcagg ggctgccgat gtcggtacag ccgacacaac tggtgacgga
    16441 gacattaaac gaacgtcagg cgcgcgtact gtcgcttgct gagctgaaag acaagcttga
    16501 cgagatggaa ggcgtgcagt ttaagcagtt taactccatc accgattatc attcgctgat
    16561 gtttgactta gggattatcg cccgtcgtct gcgttccgct tccgatcgta gtaaattcta
    16621 tcgtttgata gaggcctcgc tgtacggcgg gatctccagc gccattaccc gatcgctacg
    16681 cgattattta ttgccggaaa acagcggcgt gcgcaaggcg ttccaggata tggaagcggc
    16741 gctgcgcgag aaccgactca cgctggaagc gattcgtgtt acccaatccg atcgcgatct
    16801 gtttaagcat ttgatcagcg aagccaccga ttatgtggcg gcggattata tgcgccacgc
    16861 caatgagcgt cgggttcacc ttgatcaggc gttggcgttt cgacgcgaac tgtacacatc
    16921 gcgcaaacaa ctggcggcgg agcagtacaa gcacgtcgat atggcccgtg agttgggcga
    16981 acataacggc gccgaaggtt ctcttgaagc ggattaccag gcggcgagcg atcacctgaa
    17041 tctggtgcaa accgcgctgc gccagcagga aaaaattgaa cgctacgaag cggatcttga
    17101 agagctgcag attcgattcg aagagcaaaa tgaagtggtg gcggaagccg ccgaaatgca
    17161 ggacgaaaat gaagcgcgtg ccgaagccgc cgagctggaa gtcgatgaac tcaaaagcca
    17221 gcttgcggat taccagcagg cgctggatgt acagcaaacg cgcgcgattc agtataacca
    17281 ggcgatatca gcgcttgccc gcgctaaaga actttgccat ctaccggatc taacgccgga
    17341 aagcgccgcc gaatggctgg atactttcca ggcaaaagag caggaagcta cggaaaaact
    17401 gctgtcgttg gaacaaaaaa tgagcgtggc gcaaaccgcg cacagccagt ttgagcaggc
    17461 ttaccagctg gtggcggcga tcaacggccc gctggcgcgt agcgaagcct gggacgtggc
    17521 gcgcgagctg ttacgggacg gcgtgaacca gcgtcatctg gcggaacagg tacagccgct
    17581 gcggatgcgc ctgagcgaac tggaacagcg gctgcgcgag cagcaagagg cggaacgtct
    17641 gctggcggag ttctgtaagc gacagggcaa aaattttgat attgacgaac tggaagcgct
    17701 gcatcaggag ctggaagccc gcatcgcgtc cttgtctgag agcgtgtcgt cagccagcga
    17761 acagcgtatg gccttgcgtc aggaacagga acagctgcaa tcccgtatcc agcatctgat
    17821 gcaacgcgct cctgtctggc tggcggcgca gaatagcctg aaccagctta gcgaacagtg
    17881 cggcgaggag tttacgtcca gccaggaagt gaccgaatac ctgcaacagc tactggagcg
    17941 tgagcgcgaa gccattgtcg aacgcgacga agtgggcgca cgtaaaaatg cggttgatga
    18001 agagatcgaa cgtttaagcc agccgggcgg tgcggaagat cagcgtttga atgcgctggc
    18061 ggagcgtttt ggcggggtac tgctgtcgga aatctacgac gatgtcagtc ttgaagatgc
    18121 gccgtacttc tccgcactgt atggcccgtc gcgccatgcg atcgtcgtac cggatttatc
    18181 gcaaatagcc gaacagcttg aaggtctgac cgactgcccg gaagatctgt acctgatcga
    18241 aggcgatccg cagtcttttg atgacagcgt attcagcgtt gacgagctgg aaaaggcggt
    18301 ggtcgtgaaa attgccgacc gtcagtggcg ttattcgcgt ttcccgtcgc tacctatttt
    18361 tggccgcgcg gcgcgcgaga accgtattga gagtctccat gcggaacggg aagtgctttc
    18421 cgagcgcttt gccacgctct cgtttgacgt gcagaaaacc cagcgtttgc accaggcgtt
    18481 cagccgtttt atcggtagcc acctttccgt tgcctttgag gacgatccgg aagcggaaat
    18541 tcgccgactg aacgggcgtc gcgtcgagct ggagcgcgcg ctggcgacgc atgaaagcga
    18601 caaccagcag cagcgccttc agtttgagca ggccaaagag ggcgtttccg cgcttaaccg
    18661 tttgctgccg cggctgaatt tattggccga tgaaacgctg gccgatcggg tcgatgaaat
    18721 tcaggagcgg ttggatgagg cgcaggaagc ggcgcgattt gtgcagcaat atggcaacca
    18781 gttagccaaa ctggagccaa tggtttccgt tctgcaaagc gatccggaac agtttgagca
    18841 attaaaagaa gactatgcat ggtcgcagca aatgcagcgc gacgcgcgcc agcaggcttt
    18901 tgctctggct gaagttgtcg aacgtcgggc gcatttcagc tattccgact cggcggaaat
    18961 gctgagcggc aacagcgatc tcaacgaaaa gctgcgccag cggctggagc aggcggaagc
    19021 cgagcgtacc cgcgcccgcg aagcgctgcg cagccatgcc gcgcagttaa gtcagtacag
    19081 ccaggttctg gcctcgctaa aaagctctta cgacacgaaa aaagagctgc ttaacgattt
    19141 gcagcgcgaa ttacaggaca ttggcgttcg cgccgacagc ggggcggaag agcgcgcccg
    19201 ccagcgtcgg gatgaactgc acgctcagtt gagcaataac cgttcgcgtc gcaatcagct
    19261 tgagaaagcg ctcaccttct gcgaagcgga gatggagaac ctgacccgta agctgcgcaa
    19321 gctggagcgc gattatcatg aaatgcgcga gcaggtcgtg accgcgaaag ccggctggtg
    19381 cgcggtcatg cggatggtga aagacaatgg cgtggaacgc cgtctgcacc gtcgtgagct
    19441 ggcttatctg tcggcggatg aactgcgctc catgtcggat aaggcgttgg gcgcgctgcg
    19501 tctggccgtc gcggataacg aacatctgcg cgacgtattg cgtctgtcgg aagatccgaa
    19561 acgcccggaa cgtaaaatcc agttctttgt ggccgtttac cagcatctgc gcgagcgtat
    19621 tcgtcaggat attattcgta ccgacgatcc ggttgaagcc attgaacaaa tggagattga
    19681 gctgagccgt ctgacggaag agctgacatc gcgtgagcaa aagctggcga tcagttcccg
    19741 cagcgtggca aacatcatcc gcaaaactat ccagcgtgag cagaaccgta tccgtatgct
    19801 gaaccagggt ttgcaaagcg tctcgtttgg ccaggtgaat agcgtgcggt taaacgtcaa
    19861 cgtgcgtgaa acgcatgcca ccttgctgga tgtgctttca gaacagcagg agcagcatca
    19921 ggatctgttt aacagcaatc gtctgacctt ctccgaagcg ctggcgaaac tgtaccagcg
    19981 cctgaatccg cagatcgata tgggtcaacg cacgccgcag accatcggcg aggagttgct
    20041 ggactaccgt aactatctgg aaatggaagt tgaagttaac cgtgggtctg acggctggct
    20101 gcgtgcggaa tccggcgcgc tatcaacggg tgaagctatc ggaacaggga tgtcaattct
    20161 ggtgatggtg gtgcaaagct gggaagacga agcgcgcaga ctgcgcggga aagatatttc
    20221 gccatgtcgc ctgctgttcc tcgatgaagc ggcgcgtctg gatgcgcgct ctatcgccac
    20281 gctgtttgaa ctatgcgaac gtttgcagat gcagctcatc atcgctgcgc cggaaaacat
    20341 cagtccggag aagggcacga cgtataaact ggtgcgtaaa gtgtttcaga atactgagca
    20401 tgttcatgtt gtcgggctgc gtggctttgc gccgcagctt ccggaaacgc ttcccggtac
    20461 gcaggcggaa gatacgcctt cagaagcgag ttaaacacgg cagaaacgat gaagtgcctg
    20521 atggcgcctc gcttatcagg caaggccgga taagtcggtt atgccggcat ccggcataac
    20581 aagttctgct ttatcattag cctggggcgg cgaaagccgc ctttttcttt atctgaaaaa
    20641 tctctccggg tagtgtattt tctttaaact tctttacatt aggttaggca aaaacgtaac
    20701 gaactttata tactggagtt aagcctgacg agtgagcagg ctgactcgtc atactaaaca
    20761 aaagcattgg ttgaggttga cccgcgctgc gggcagcaca gtcatgcgga gtatgataac
    20821 gaaaacaggg ggcaagggat gttgcttaat aagatgtgtg gtcgttgtct gtcggcaatc
    20881 agtttatgcc tggccgtaac attcgctcca ctgttcaatg cgcaggccga tgagcctgaa
    20941 atgatacctg gcgatagcgc cgttgccgcg acgggtcagg ctgggccgca gaagcaatcc
    21001 gccgcgacgg cgattctggc cgggattcag ccgctgccgg agggcgtttc agccgagaaa
    21061 gttcgggctg atttacagtc gcagcttcct tccggctata cgccggtcta tatgagccag
    21121 ctgacattgc tgtatgccgc gcgcgacatg aagcccatgt gggataatcg cgatgcggtg
    21181 aaagccttcc agcaacagtt ggcggaggtg gcgatcgccg gattccagcc gcagtttacc
    21241 gcctgggtgg cattgttgac cgctcccgcc gtaaacggta tggcgcgcga tgttgtgttg
    21301 tcagacgcca tgatgggcta tctccatttc attgcgaata tccccgtcaa aggccaacgc
    21361 tggctatata gcaacaaacc ttacgcattg gcgacgccgc cagtctcggt gattaaccag
    21421 tggcaaatcg cgctggaaga ggggcagttg ccgatgtttg tcgccagcct ggcgccgcag
    21481 catccacagt atgcgcccat gcatgacgca ctgctgaagc tggtggcgga ctctcgcccg
    21541 tggccgcagt tgaccaatac cgcgacgctg cgcccggggc aatggagtaa cgatgtgcct
    21601 gcgctgcgcg aaatattaca gcgtacgggg atgctggatg gcggtccaaa gatagcctta
    21661 cccggcgata acacctctga tagtgccgtc gtcagcccct ccgccgtagt cgacgaaaca
    21721 tcggtggcgc agccggtcga cgaaccaacg gcccgccgta gtaagccggc tccggcggca
    21781 cgcgcctacg atcgtgaact ggtcgaggcg gtaaagcgtt ttcaggcatg gcaaggactg
    21841 ggggcggatg gcgtcattgg cccggcgacg cgtaactggc ttaatatgac ccccgcgcaa
    21901 cgcgcaggcg tactggcact gaatatccaa cgtttacgcc tgctgccggc ggaactctct
    21961 accggtatta tggtaaacat tcccgcttat tcgctggtct actatcagaa tggcaaccag
    22021 gtgctggctt caagggtgat cgtcgggcgt cccgatcgta aaacgccgat gatgagcagc
    22081 gcgctgaata atgtggtggt gaacccgccg tggaacgttc cgcccacgct tgcgcgtaaa
    22141 gacattttac cgaaggtgtg gaatgaccca ggctatctgg agcgccatgg ctacaccgtg
    22201 atgcgcggct ggaacagcaa agaagcgatc gatccgtggc aggttgactg ggccaccatt
    22261 acgccatcga atcttccgtt ccgtttccag caggcgccag gcgcgcacaa ttcgctgggg
    22321 cgttataaat ttaatatgcc gagttcagat gcgatctatc tgcacgatac gcctaaccat
    22381 aatctttttc agcgtgacgc cagggcgtta agttccggct gcgtgcgggt caataaggcc
    22441 tctgaactgg cgaatatgct tttgcaggat gctggctgga acgatgcgcg gatctctggc
    22501 gccctgaagc aaggcgacac gcggtatgtc aatatccggc agaacattcc agtaaatctt
    22561 tactatctga ccgcgtttgt cggcgcagat ggacgtatgc aatatcgtac agatatttac
    22621 aattacgatc tcacagcgcg atccagcgca caaattgtgc caaaggttga acaattaatc
    22681 aggtaaatga agaagttctg gtaaatatgt tgtcctaatg tttggcttca acggggcgtt
    22741 tcgctgtaga cccccgttgt ggctggggga gggccatctt gacgcgggct ttatcgccag
    22801 ttaaggtgcc tttcgtgcgc cagaagtgca tatacaacaa cctttaagtc gaccgggccg
    22861 ttcagaagtc tgtgccagcc ggtatcatgt ctgcttaaag gtagaagtgt attaacgata
    22921 acattgacct gtagacctga ttatcatgga caaatttgac gctaatcgcc gcaagctgct
    22981 ggcgcttggt ggtgtcgctc tcggcgccgc catcctgccc tcgccagcgt ttgccacact
    23041 ctcgacccca cgcccgcgca ttttgacgtt aaacaatctc cataccggag agtcaatcaa
    23101 ggcggagttt ttcgatggaa gagcctacat tcaggatgaa ttagcaaagt taaaccattt
    23161 tttccgtgac tatcgcgcga ataaagtccg atcaatcgat ccccgcctgt ttgaccaact
    23221 ttaccgactt caggggctgt tagggacgcg taaacctgtg cagctcatct caggctaccg
    23281 ttctcttgat accaataatg aattacgcgc ccgtagcagc ggcgtagcga aaaaaagcta
    23341 ccatacaaaa gggcaggcga tggattttca tattgagggc gtggcgctga gcaatattcg
    23401 caaagcggcg ttatctatgc gcgcaggtgg tgtaggatat tacccacgta gtaactttgt
    23461 gcatattgat accgggccag cgcggcactg gtaatcagcg aggcttaatc aaaggagcag
    23521 tatgaactat cgtattattc cggtcaccgc gttctcccag aactgttcat taatctggtg
    23581 cgaacaaacc cggctggcgg cgctggtcga tccgggcggc gacgcggaaa aaattaaaca
    23641 ggaagtggac gccagcggcg tgacgttgat gcaaatttta ctcacgcatg ggcatctcga
    23701 tcatgtcggc gcggcgagtg aactggcgca gcattacggc gttcctgtta tcggtccgga
    23761 aaaagaagat gagttctggc tgcaaggact gccggcgcaa agccgcatgt ttggtctgga
    23821 tgagtgtcag ccgctgacgc ctgatcgctg gctgaacgac ggcgatcgcg tcagcgtggg
    23881 gaatgtgacg ttacaggtgt tacattgtcc gggacacacg ccgggacacg tggttttctt
    23941 tgatgaacag tcgcaactgc tgatctccgg cgatgtgatt ttcaaaggtg gcgtcgggcg
    24001 cagcgatttt cctcgcggcg atcacaccca gttgattgac gccattaagc gtaaattatt
    24061 gccgcttggc gatgatgtga cctttattcc tggccacggc ccgctctcta cgctcggata
    24121 cgagcgtctg cataattcct tcctgcaaga tgagatgccg gtctggtaag cagaatgaaa
    24181 aagcctgcaa tgtgcaggct tttttatcgg tcacgccagt cggcagcttt ttatagtacc
    24241 gcgacaatgg cttcgcacag cggcgccata ttatccgggg tcatgcccgc cacgttcacg
    24301 cgaccagaag ccacggcata aacgccaaac tcttcacgca gacgcagcac ctgatctttg
    24361 gtcagaccgc tgaatgagaa catcccgttc tgcttgataa taaagctgaa gtcacggttc
    24421 gcgccttttt cctgcaaggt attcacgaac agttgacgca tacgctgaat acgctggcgc
    24481 atgtccgtca gttcctgttc ccagatagcg cgcagggcgt cattactcag gatagtcgcg
    24541 acgatggacg cgccgtgcgc tggtgggttg gagtagttag cgcgaatggc ggatttcatc
    24601 tggctaaaag cgcgatccac ggtttccgca tcggcggcaa cgagggtgca ggcgccgacg
    24661 cgctcattat ataagccgaa gtttttggag taggagctgg cgacaatgag ctctttatgc
    24721 agcgcggcaa aggcgcgcag accttccgca tcttcttcca ggccgcgggc aaagccctgg
    24781 taggcgaaat cgaatagcgg cagccaccct ttttcaacgg aaagctcagc cagaacctgc
    24841 cactgttcca gagtagggtc aatgccggtt gggttatgac agcaaccgtg gaacagaacc
    24901 acatcgccgg cctgtgcttc gctcaggctg gcttgtagcg cttcaaaatc cagcgagtga
    24961 ttttccgcat cgtagtaagc gtactcccga acttccaggc cggcagcgtt aaacacgctt
    25021 ttgtggttcg gccagctggg gttgctcacc cacacccgtt ttaccggagt attttttgcc
    25081 aaaaagtcgg cggcaatgcg taacgcgccg gtaccgcccg gcgtttgcgc cgtgcgtgcg
    25141 cgcttatcat taatcagcgc gctgcctttg ccgaacagca gttcctgagt gcagcgagca
    25201 aattccggaa tcccgtcaat gccgagatag tttttcgtcg tttcattttc cagtaaatac
    25261 tgctcggctt ttttaacgct ggtgagcacc ggtgttttgc cggtttcatc tttatatacg
    25321 ccaatgccaa ggttaatttt ccctggacgg tcatcggcgc gaaacagatc ggccaggccc
    25381 aaaatcgggt cggcaggagc ggcggttatg ttctcaaaca tgacgaggtt ccattatagt
    25441 tacagaaggg aaatccgcta tcaggttaac ggcagattta caaaatgcca accgttagcg
    25501 ctaaaaagcc cgcctgtttt tgaaagacgc acattttctc taagagagat aaaaaaacag
    25561 gaccgaagtc ctgtttttga ggcataaaac aaaggggtct gctgatcaga actggtaagt
    25621 aataccgaca gccgcctgat cgtcggtgcc aacgtagctg gagctgtagt cgttttcgtc
    25681 cagcaggttg aaacggtagt caacccatac gttcatgttt ttgttgaagt agtaagtcgc
    25741 gcccgcctga atatatttcg ccagatcggc cgagccgtcg gcgccgttca actgcttacc
    25801 tttactctgc acatacgaga ttgccggacg caggccgaag tcaaactggt actgagcgac
    25861 cacttccagg ttctgcgttt tgtttgccat ttccacggta tcggtaaccg tattttcaac
    25921 aatgctcata ttgcgggttt cagcatatac ggcagccagg tagacgttgt ttgcatcata
    25981 tttcgcgcca acggcccacg attctgcgcg atcgccatta ccatcgcgat cctgctgatc
    26041 gttagtacgc ttgctgttgc tgtacgctgc ggtgacgcca aagccgtcga actcatatgc
    26101 catggtgtaa cctacgccat cgccattctg agagttaatg ctgtggttgt cctgattttt
    26161 accctgatac tggataccga aagagagacc gtccaccaga ccaaagaagt cagagttacg
    26221 gtaggtcaac aaaccgccag cacggctggt catgtagtta tcggtatagg cgccgcccca
    26281 ggtttcgccg gagaagtagg gggccatatc ggtataggat tcaacatcgt aaacgatacc
    26341 gtagttacga ccataatcga ttgaacccac ttccgcgtat ttcaaacccg cgaaagccag
    26401 acgtaccaga ttcgagttct gctgttcgcc ttcagcgcgg tctgctttag tacggtattc
    26461 ccactgaccg aaaccggtca gatcggtgtt aatctgcgtt tcccctttaa aaccaatctg
    26521 ggcataagtc tggtcggcat ttttactatc gccggtcgtt gtccatacgt gacgacccac
    26581 ggctttaccg tacagatcca gcttattacc atctttatta taaatttctg ctgcgtttgc
    26641 ggttgcagca gccagcaggg cagggatcac cgc
//
LOCUS       DAJVSD010000035        26361 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.035, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000035 DAJVSD010000000
VERSION     DAJVSD010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 26361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26361
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.035"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            170..724
                     /locus_tag="OQP62_001218"
     CDS             170..724
                     /locus_tag="OQP62_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HCS1720814.1"
                     /translation="MSDTLRPYKDLFPEIGQRVMIDTSSVVIGDVRLADDVGIWPLVV
                     IRGDVNYVAIGARTNIQDGSVLHVTHKSPSNPHGNPLIIGEDVTVGHKVMLHGCTIGN
                     RVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSDAERSG
                     LQYSANNYVKWKDDYLSQDNHIQP"
     gene            complement(700..957)
                     /locus_tag="OQP62_001219"
     CDS             complement(700..957)
                     /locus_tag="OQP62_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1488 domain-containing protein"
                     /protein_id="HCS1720815.1"
                     /translation="MNQAIQFPDREEWDTAASAIIFPALVNGMQITCAIKKDVLAYRF
                     GGETAEQWLAIFREYRWDLEEEAEALILAQQEDDHGWIWLS"
     gene            complement(954..1772)
                     /gene="aroE"
                     /locus_tag="OQP62_001220"
     CDS             complement(954..1772)
                     /gene="aroE"
                     /locus_tag="OQP62_001220"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HCS1720816.1"
                     /translation="MEAYAVFGNPIAHSKSPFIHQQFAQQLDIVHPYGRVLAPINNFI
                     NTLDAFFAAGGKGANITVPFKEEAFARSDELTERASLAGAVNTLKRLEDGRLLGDNTD
                     GIGLLSDLERLNFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTASRAEALAK
                     IFAHTGSVHAMDMDKLDGCEFDLIINATSSGIRGEIPAIPASLIHPSLCCYDMFYQKG
                     NTPFLSWCVQQGAKRYADGLGMLVGQAAHAVLLWHGVLPQVEPVIKLLQQELLA"
     gene            complement(1777..2349)
                     /gene="tsaC"
                     /locus_tag="OQP62_001221"
     CDS             complement(1777..2349)
                     /gene="tsaC"
                     /locus_tag="OQP62_001221"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase type 1
                     TsaC"
                     /protein_id="HCS1720817.1"
                     /translation="MNNNLPTGSSAAVVDLLNKENVIAYPTEAVFGVGCDPDSETAVT
                     RLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPAT
                     TPRWLTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEVRAQFGD
                     DFPVVEGATGGRLNPSEIRDALTGELFRQG"
     gene            complement(2354..2896)
                     /locus_tag="OQP62_001222"
     CDS             complement(2354..2896)
                     /locus_tag="OQP62_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase"
                     /protein_id="HCS1720818.1"
                     /translation="MAKSALFSVRKNEPCPQCGAELVIRSGKHGPFLGCSRYPECDYV
                     RPLKSQADGHIVKILEGQLCPECGAVLVLRQGRFGMFIGCSQYPQCEHTVVIDKPDET
                     AIACPACQQGHLVQRRSRYGKIFHSCDRYPECQFVINFTPVAGECPECHYSLLIEKKT
                     AQGVKRFCASKQCGKPVPVE"
     gene            complement(2923..3396)
                     /locus_tag="OQP62_001223"
     CDS             complement(2923..3396)
                     /locus_tag="OQP62_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF494 domain-containing protein"
                     /protein_id="HCS1720819.1"
                     /translation="MFDVLMYLFETYIHNEAELRVDQDRLERDLTDAGFDREDIYNAL
                     LWLEKLADYQDGLAEPMQLASDPLSMRIYTVEECERLDASCRGFLLFLEQIQVLNLET
                     REMVIERVLALDTAEFDLEDLKWVILMVLFNIPGCENAYQQMEELLFEVNEGMLH"
     gene            complement(3368..4492)
                     /gene="dprA"
                     /locus_tag="OQP62_001224"
     CDS             complement(3368..4492)
                     /gene="dprA"
                     /locus_tag="OQP62_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HCS1720820.1"
                     /translation="MARTEIWLRLMYVGDLYGEAMLNMANSLIRQPQINRTHLQEAGL
                     TARQAERFLQLPAGVLDETLRWLELPQHHFLCADSEIYPPQLRAIDDYPGAIFIDGDP
                     ACLHTCQLAVVGSRSHSWYGERWGRLLCESLAKSGLTITSGLARGIDGVAHNAAMSMG
                     GKSVAVLGNGLAKIYPRRHAMLAENLIATGGAVVSEFPLSTPPLSQNFPRRNRIISGL
                     SKGVLVIEAALRSGSLVTARCALEQGRDVFALPGPIGSPGSEGTHWLIKQGATLVTTP
                     EDILENLQYGLHWLPTTAENSLYSLNQDEAALPFPELLANVGDEVTPVDVVAERAGQP
                     VPAVVAQLLELELAGWIAAVPGGYVRLRRASHVRRTNVFV"
     gene            4624..5133
                     /gene="def"
                     /locus_tag="OQP62_001225"
     CDS             4624..5133
                     /gene="def"
                     /locus_tag="OQP62_001225"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HCS1720821.1"
                     /translation="MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEG
                     IGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVP
                     RAEKVKIRALDRNGNPFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVE
                     KLDRLNARA"
     gene            5149..6096
                     /gene="fmt"
                     /locus_tag="OQP62_001226"
     CDS             5149..6096
                     /gene="fmt"
                     /locus_tag="OQP62_001226"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HCS1720822.1"
                     /translation="MSDSLRIIFAGTPDFAARHLDALLTSGHNIVGVFTQPDRPAGRG
                     KKLMPSPVKVLAEEKGLPVFQPVSLRPQENQHLVADLHADVMVVVAYGLILPKAVLDM
                     PRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLACPIT
                     AEDTSGSLYNKLAELGPQGLITTLKQLADGTATPEAQNEALVTHAEKLSKEEARIDWS
                     LSAAQLERCIRAFNPWPMSWLEIDGQPVKVWQASVIEDATQSLPGTILAATKQGIQVA
                     TGKGILNLLSLQPAGKKAMSAQDLLNSRREWFIPGNRLA"
     gene            6148..7437
                     /gene="rsmB"
                     /locus_tag="OQP62_001227"
     CDS             6148..7437
                     /gene="rsmB"
                     /locus_tag="OQP62_001227"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HCS1720823.1"
                     /translation="MKKQNNLRSLAAQAVELVVEQGQSLSNVLPPLQQKVADKDKALL
                     QELCFGVLRTLSQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAET
                     VEGAVSIKRPQLKGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQ
                     WQRIIEANNQRPPMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVH
                     ALPGFAEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAV
                     DIDEQRLSRVYDNLKRLGMKATVKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH
                     PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQR
                     TPDAALSETGTPDQPGQQNLPGGEEGDGFFYAKLIKK"
     gene            7459..8835
                     /gene="trkA"
                     /locus_tag="OQP62_001228"
     CDS             7459..8835
                     /gene="trkA"
                     /locus_tag="OQP62_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004125888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HCS1720824.1"
                     /translation="MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRSLQDKFD
                     LRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSP
                     DYVRDADKLFHSEAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKA
                     YYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHI
                     RAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERDQQRAAELAEKLQN
                     TIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRA
                     YVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTS
                     RVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERL
                     FQPSPFFL"
     gene            8977..9390
                     /gene="mscL"
                     /locus_tag="OQP62_001229"
     CDS             8977..9390
                     /gene="mscL"
                     /locus_tag="OQP62_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HCS1720825.1"
                     /translation="MSFIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPP
                     LGLLIGGIDFKQFAFTLREAQGDIPAVVMHYGVFIQNVFDFVIVAFAIFVAIKLINRL
                     NRKKAEEPAAPPAPSKEEVLLGEIRDLLKEQNNRS"
     gene            complement(9326..9595)
                     /locus_tag="OQP62_001230"
     CDS             complement(9326..9595)
                     /locus_tag="OQP62_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome-rescue factor A"
                     /protein_id="HCS1720826.1"
                     /translation="MSRYQHKKGQIKDNAIEALLHDPLFRQRVEKNKKGKGSYLRKGK
                     HGNRGNWEASGKKVSDFFTTGLLLIKNGYFVLSADRGFRPITLPL"
     gene            complement(9654..10079)
                     /gene="zntR"
                     /locus_tag="OQP62_001231"
     CDS             complement(9654..10079)
                     /gene="zntR"
                     /locus_tag="OQP62_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(2+)-responsive transcriptional regulator"
                     /protein_id="HCS1720827.1"
                     /translation="MYRIGELAKLADVTPDTIRYYEKQQMMDHEVRTEGGFRLYTEND
                     LQRLKFIRYARQLGFTLESIRELLSIRIDPEHHTCQESKSIVQERLQEVEARIAELQT
                     MQRSLQRLNDACCGTAHSSVYCSILEALEQGASGAKSVC"
     gene            complement(10090..10458)
                     /locus_tag="OQP62_001232"
     CDS             complement(10090..10458)
                     /locus_tag="OQP62_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1992 domain-containing protein"
                     /protein_id="HCS1720828.1"
                     /translation="MWLLDQWAERHIIEAQRKGEFDNLPGRGEPLILDDDSHVPAELR
                     AGYRLLKNAGCLPPELEQRRDAIQLLDILNSIREDDPQYHQVSRQLSLLELKLRQAGL
                     STDFLHGEYAEKLLHKINDN"
     gene            complement(10565..10948)
                     /gene="rplQ"
                     /locus_tag="OQP62_001233"
     CDS             complement(10565..10948)
                     /gene="rplQ"
                     /locus_tag="OQP62_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HCS1720829.1"
                     /translation="MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKEL
                     RRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGF
                     RAGDNAPMAYIELVDRSEKTEAAAE"
     gene            complement(10989..11978)
                     /gene="rpoA"
                     /locus_tag="OQP62_001234"
     CDS             complement(10989..11978)
                     /gene="rpoA"
                     /locus_tag="OQP62_001234"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HCS1720830.1"
                     /translation="MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALR
                     RILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTL
                     NKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIH
                     SEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIR
                     RAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIH
                     YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIADE"
     gene            complement(12004..12624)
                     /gene="rpsD"
                     /locus_tag="OQP62_001235"
     CDS             complement(12004..12624)
                     /gene="rpsD"
                     /locus_tag="OQP62_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HCS1720831.1"
                     /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIGQAPGQHGAR
                     KPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVV
                     YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE
                     LAEQREKPTWLEVDAGKMEGTYKRKPERSDLSADINEHLIVELYSK"
     gene            complement(12658..13047)
                     /gene="rpsK"
                     /locus_tag="OQP62_001236"
     CDS             complement(12658..13047)
                     /gene="rpsK"
                     /locus_tag="OQP62_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HCS1720832.1"
                     /translation="MAKAPVCARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGW
                     ATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNA
                     AGFRITNITDVTPIPHNGCRPPKKRRV"
     gene            complement(13064..13420)
                     /gene="rpsM"
                     /locus_tag="OQP62_001237"
     CDS             complement(13064..13420)
                     /gene="rpsM"
                     /locus_tag="OQP62_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019935869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HCS1720833.1"
                     /translation="MARIAGINIPDQKHAVIALTSIYGVGKTRSKAILAAAGIAENVK
                     ISELSEEQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRT
                     KTNARTRKGPCKPIKK"
     gene            complement(13567..13683)
                     /gene="rpmJ"
                     /locus_tag="OQP62_001238"
     CDS             complement(13567..13683)
                     /gene="rpmJ"
                     /locus_tag="OQP62_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020322760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HCS1720834.1"
                     /translation="MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG"
     gene            complement(13715..15046)
                     /gene="secY"
                     /locus_tag="OQP62_001239"
     CDS             complement(13715..15046)
                     /gene="secY"
                     /locus_tag="OQP62_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004868351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HCS1720835.1"
                     /translation="MAKQPGLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGI
                     DAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLLTVVHPTL
                     AEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVMNPGFAFYFTA
                     VVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFL
                     VLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIP
                     AIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTA
                     LVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTHLTLVGALYITFICLIPEFMR
                     DAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKANLKGYGR"
     gene            complement(15054..15488)
                     /gene="rplO"
                     /locus_tag="OQP62_001240"
     CDS             complement(15054..15488)
                     /gene="rplO"
                     /locus_tag="OQP62_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HCS1720836.1"
                     /translation="MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGG
                     GVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIG
                     IQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE"
     gene            complement(15492..15671)
                     /gene="rpmD"
                     /locus_tag="OQP62_001241"
     CDS             complement(15492..15671)
                     /gene="rpmD"
                     /locus_tag="OQP62_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HCS1720837.1"
                     /translation="MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAV
                     RGMVNAVSFMVKVEE"
     gene            complement(15675..16178)
                     /gene="rpsE"
                     /locus_tag="OQP62_001242"
     CDS             complement(15675..16178)
                     /gene="rpsE"
                     /locus_tag="OQP62_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004106339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HCS1720838.1"
                     /translation="MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNG
                     RVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEG
                     TGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKS
                     VEEILGK"
     gene            complement(16193..16546)
                     /gene="rplR"
                     /locus_tag="OQP62_001243"
     CDS             complement(16193..16546)
                     /gene="rplR"
                     /locus_tag="OQP62_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HCS1720839.1"
                     /translation="MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNG
                     SEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGR
                     VQALADAAREAGLQF"
     gene            complement(16556..17089)
                     /gene="rplF"
                     /locus_tag="OQP62_001244"
     CDS             complement(16556..17089)
                     /gene="rplF"
                     /locus_tag="OQP62_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HCS1720840.1"
                     /translation="MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVK
                     HADNALTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNV
                     VNLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGK
                     GVRYADEVVRTKEAKKK"
     gene            complement(17102..17494)
                     /gene="rpsH"
                     /locus_tag="OQP62_001245"
     CDS             complement(17102..17494)
                     /gene="rpsH"
                     /locus_tag="OQP62_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HCS1720841.1"
                     /translation="MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEG
                     FIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIA
                     VVSTSKGVMTDRAARQAGLGGEIICYVA"
     gene            complement(17528..17833)
                     /gene="rpsN"
                     /locus_tag="OQP62_001246"
     CDS             complement(17528..17833)
                     /gene="rpsN"
                     /locus_tag="OQP62_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HCS1720842.1"
                     /translation="MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNATDEDRWNA
                     VLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW"
     gene            complement(17848..18387)
                     /gene="rplE"
                     /locus_tag="OQP62_001247"
     CDS             complement(17848..18387)
                     /gene="rplE"
                     /locus_tag="OQP62_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HCS1720843.1"
                     /translation="MAKLHDYYKDEVVNKLMTEFNYNSVMQVPRVEKITLNMGVGEAI
                     ADKKLLDNAAADLTAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER
                     LITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA
                     KSDEEGRALLAAFDFPFRK"
     gene            complement(18402..18716)
                     /gene="rplX"
                     /locus_tag="OQP62_001248"
     CDS             complement(18402..18716)
                     /gene="rplX"
                     /locus_tag="OQP62_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000729185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HCS1720844.1"
                     /translation="MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKK
                     HQKPVPALNQPGGIVEKEAAIQVSNVAIFNTATGKADRVGFRFEDGKKVRFFKSNSET
                     IK"
     gene            complement(18727..19098)
                     /gene="rplN"
                     /locus_tag="OQP62_001249"
     CDS             complement(18727..19098)
                     /gene="rplN"
                     /locus_tag="OQP62_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015817037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HCS1720845.1"
                     /translation="MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIK
                     EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVILNNNSEQPIGTRIFGP
                     VTRELRNEKFMKIISLAPEVL"
     gene            complement(19262..19516)
                     /gene="rpsQ"
                     /locus_tag="OQP62_001250"
     CDS             complement(19262..19516)
                     /gene="rpsQ"
                     /locus_tag="OQP62_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006817275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HCS1720846.1"
                     /translation="MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKM
                     HVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL"
     gene            complement(19516..19707)
                     /gene="rpmC"
                     /locus_tag="OQP62_001251"
     CDS             complement(19516..19707)
                     /gene="rpmC"
                     /locus_tag="OQP62_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000644743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HCS1720847.1"
                     /translation="MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLK
                     QVRRDVARVKTLLTEKAGA"
     gene            complement(19707..20117)
                     /gene="rplP"
                     /locus_tag="OQP62_001252"
     CDS             complement(19707..20117)
                     /gene="rplP"
                     /locus_tag="OQP62_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HCS1720848.1"
                     /translation="MLQPKRTKFRKMHKGRNRGLAAGADVSFGSFGLKAVGRGRLTAR
                     QIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVL
                     YEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM"
     gene            complement(20130..20831)
                     /gene="rpsC"
                     /locus_tag="OQP62_001253"
     CDS             complement(20130..20831)
                     /gene="rpsC"
                     /locus_tag="OQP62_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HCS1720849.1"
                     /translation="MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLT
                     KELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN
                     IAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGA
                     EIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPE
                     KPAAQPKKQQRKGRK"
     gene            complement(20849..21181)
                     /gene="rplV"
                     /locus_tag="OQP62_001254"
     CDS             complement(20849..21181)
                     /gene="rplV"
                     /locus_tag="OQP62_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HCS1720850.1"
                     /translation="METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAA
                     VLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSH
                     ITVVVSDR"
     gene            complement(21196..21474)
                     /gene="rpsS"
                     /locus_tag="OQP62_001255"
     CDS             complement(21196..21474)
                     /gene="rpsS"
                     /locus_tag="OQP62_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HCS1720851.1"
                     /translation="MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNM
                     IGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK"
     gene            complement(21491..22312)
                     /gene="rplB"
                     /locus_tag="OQP62_001256"
     CDS             complement(21491..22312)
                     /gene="rplB"
                     /locus_tag="OQP62_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HCS1720852.1"
                     /translation="MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLVEKNSKSGGRN
                     NNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERR
                     YILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGT
                     YVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRP
                     TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK"
     gene            complement(22330..22632)
                     /gene="rplW"
                     /locus_tag="OQP62_001257"
     CDS             complement(22330..22632)
                     /gene="rplW"
                     /locus_tag="OQP62_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007891652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HCS1720853.1"
                     /translation="MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIK
                     AAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE"
     gene            complement(22629..23234)
                     /gene="rplD"
                     /locus_tag="OQP62_001258"
     CDS             complement(22629..23234)
                     /gene="rplD"
                     /locus_tag="OQP62_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HCS1720854.1"
                     /translation="MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR
                     AQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYR
                     GALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLA
                     ARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA"
     gene            complement(23245..23874)
                     /gene="rplC"
                     /locus_tag="OQP62_001259"
     CDS             complement(23245..23874)
                     /gene="rplC"
                     /locus_tag="OQP62_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HCS1720855.1"
                     /translation="MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDG
                     YRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEYTVGQSISVELFA
                     DVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKK
                     MAGQMGNERVTVQSLDVVRVDAERNLLLVKGGVPGATGCDLIVKPAVKA"
     gene            complement(23907..24218)
                     /gene="rpsJ"
                     /locus_tag="OQP62_001260"
     CDS             complement(23907..24218)
                     /gene="rpsJ"
                     /locus_tag="OQP62_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HCS1720856.1"
                     /translation="MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPT
                     RKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISL
                     G"
     gene            24598..25065
                     /gene="hopD"
                     /locus_tag="OQP62_001261"
     CDS             24598..25065
                     /gene="hopD"
                     /locus_tag="OQP62_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leader peptidase HopD"
                     /protein_id="HCS1720857.1"
                     /translation="MFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYH
                     QICLPERLPDALWGAIAGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETL
                     PLLVFLAAMLACGRFGVALLVRGKSALINPLPFGPWLAVAGFITGWKVFFPDG"
     gene            complement(25062..25538)
                     /gene="bfr"
                     /locus_tag="OQP62_001262"
     CDS             complement(25062..25538)
                     /gene="bfr"
                     /locus_tag="OQP62_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HCS1720858.1"
                     /translation="MKGDVKIINYLNKLLGNELVAINQYFLHARMFKNWGLTRLNDVE
                     YHESIDEMKHADKYIERILFLEGIPNLQDLGKLGIGEDVEEMLRSDLRLELEGAKDLR
                     EAIAYADNVHDYVSRDMMIEILADEEGHIDWLETELDLIAKLGMQNYLQSQIKVTD"
     gene            complement(25611..25805)
                     /gene="bfd"
                     /locus_tag="OQP62_001263"
     CDS             complement(25611..25805)
                     /gene="bfd"
                     /locus_tag="OQP62_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin-associated ferredoxin"
                     /protein_id="HCS1720859.1"
                     /translation="MYVCLCNGISDKKIRQAVRQFHPQSFQQLRKFIPVGNQCGKCIR
                     AAREVMQDELTQMPEFKEIA"
     gene            complement(25990..>26361)
                     /gene="tuf"
                     /locus_tag="OQP62_001264"
     CDS             complement(25990..>26361)
                     /gene="tuf"
                     /locus_tag="OQP62_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="EF-Tu; promotes GTP-dependent binding of
                     aminoacyl-tRNA to the A-site of ribosomes during protein
                     biosynthesis; when the tRNA anticodon matches the mRNA
                     codon, GTP hydrolysis results; the inactive EF-Tu-GDP
                     leaves the ribosome and release of GDP is promoted by
                     elongation factor Ts; many prokaryotes have two copies of
                     the gene encoding EF-Tu; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HCS1720860.1"
                     /translation="GENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKD
                     EGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGL
                     RFAIREGGRTVGAGVVAKVLG"
BASE COUNT         6393 a         6996 c         6371 g         6601 t
ORIGIN      
        1 cccatttttt tgcacaagcg ttttttggat cttttttctg tttgttgatt tttcatccct
       61 ttcgctccat tcctgcgcaa agtggcgatt ttttgatgct atctcccctt gcacaacgcc
      121 gttaaagcaa ccaaagtctt catgactatt catttatgat gaggtagaca tgtctgacac
      181 attacgtcct tataaggatc tttttcctga aatcggtcag cgcgtgatga tcgataccag
      241 cagcgtggtt attggcgatg tccgtctggc ggatgatgtc gggatctggc cgcttgtggt
      301 gattcgcggc gatgtgaatt acgttgcgat aggggctcgt acgaacattc aggatggcag
      361 cgttcttcac gtaacccaca agtctccatc caatccacac ggcaacccat taatcattgg
      421 cgaagatgtt accgttggcc ataaagttat gctgcacggc tgtaccatcg gtaaccgcgt
      481 actggtcggt atgggctcca ttgtgctgga tggcgcgata atagaagatg acgtaatgat
      541 tggcgcggga agcctggtgc cgcagcacaa acggctggaa agcggctatt tatatcttgg
      601 cagtccggta aaacagatcc gccccctgag cgatgctgag agatcgggcc tgcagtactc
      661 cgccaataac tatgtaaaat ggaaagacga ctatctttct caggataacc atatccaacc
      721 gtgatcgtct tcctgctggg ccaggattaa tgcttcagcc tcttcttcca ggtcccagcg
      781 atactcacga aaaatggcca gccattgctc cgctgtttct ccaccaaagc gatacgccag
      841 tacatctttt tttatcgcac acgtgatttg catcccattg accagggcgg gaaagatgat
      901 agcgctggcg gcagtatccc attcttcgcg gtcagggaat tgtatggcct ggttcacgct
      961 aataattcct gctgtagcag cttaatcact ggctcgacct gcggtaatac accgtgccaa
     1021 agcaaaacgg catgtgcagc ctgccccacc agcattccca gcccatctgc gtagcgtttc
     1081 gcgccctgtt gtacacacca ggagagaaat ggcgtattcc ctttttgata gaacatgtca
     1141 tagcaacaga gggaaggatg aataagtgac gccggaatcg ccgggatttc gccccgtatg
     1201 ccgctggagg tcgcattaat aatcaggtca aactcacaac catccagctt gtccatatcc
     1261 atagcatgaa cgctgccggt atgagcaaag attttcgcca acgcttcggc acgtgaagct
     1321 gtacggttag tgatagtgac cgcacaatcc aaagaaagca ggggtaacag cacgccccgg
     1381 gatgcgccgc ccgcgccaat cagcaaaata cgcaatcctg ggcggataaa atttaaacgt
     1441 tcgagatcgc ttaataaacc gataccgtca gtattgtcgc caagcaaacg accatcttcc
     1501 agccgtttta atgtattgac ggctcccgcc agcgatgctc gttccgttaa ctcatccgaa
     1561 cgcgcaaacg cctcctcttt aaaaggtact gtgatgtttg cgccttttcc ccctgccgcg
     1621 aaaaaggcat caagcgtatt aatgaaatta ttaatggggg ccagcacgcg accatagggg
     1681 tgaacaatat ctagctgctg agcaaattgc tgatgaataa atggcgattt gctgtgcgca
     1741 atcggatttc caaaaacagc ataggcttcc atcatattac ccctgtcgaa atagttcgcc
     1801 cgtcagagca tcgcggattt ctgaaggatt taaacgccca cccgttgcgc cttcaaccac
     1861 cggaaaatca tcgccaaatt gcgcacgcac ctcttcaacg gtacggcatg gcggtaatcc
     1921 gctcagattg gcgctggtgg aaaccagcgg tttgccatac gcattgcata gcgcgaccac
     1981 cagcgggtgg ttggtaacac gaacggccag ggaatcaaaa cgtcccgtga gccaccgcgg
     2041 cgttgtcgcg ggcgcaggaa aaacaaacgt taccggcccg ggccagcaat caaataccgc
     2101 tttacgctgt gcggcggtaa gtatgctgtc atcaatataa ggttttaact gctcaaagct
     2161 ggcggcaatc aaaatgagtc ccttatcgac gggccgttgt tttaacgcca gcaggcgcgt
     2221 aacggctgtt tcactatcgg gatcgcagcc gacgccgaaa acggcttctg ttggataagc
     2281 gatgacattt tctttattca ggagatctac caccgcggcg ctagatcctg ttggcaggtt
     2341 attattcact tgtttattcc accggaaccg gctttccaca ttgtttactg gcgcaaaagc
     2401 gcttcacgcc ctgcgcggtt ttcttttcga tgagtagcga ataatggcac tcggggcatt
     2461 cccccgcaac cggtgtgaag ttaatgacga actgacattc cgggtagcga tcgcaggaat
     2521 gaaagatttt accgtaacga gaacggcgct ggaccaaatg tccttgctgg caggctggac
     2581 aggcaatcgc cgtttcatcc ggtttatcaa taaccactgt atgttcacat tgcggatact
     2641 gactgcatcc gatgaacatg ccaaagcgcc cctgacgcag caccagtacg gcgccacact
     2701 caggacacag ttgcccctcc agaattttaa cgatatgtcc gtccgcctga cttttcagcg
     2761 gacgaacgta atcgcattcc ggatagcgag aacagccgag aaacggacca tgtttcccgg
     2821 aacgaattac cagttcggcc ccgcactgcg ggcagggctc atttttacgc accgaaaaca
     2881 gtgctgattt agccatattc actcatgcag cattaacacc tatcaatgca gcataccttc
     2941 atttacctca aagagtaatt cttccatttg ctgataggcg ttttcacagc ccggaatgtt
     3001 gaataacacc atcaaaataa cccatttcaa gtcttccagg tcaaactctg cggtatccag
     3061 cgccagcaca cgctcaatca ccatttctcg tgtttcgagg tttagcacct gaatctgctc
     3121 aaggaataac aggaaccccc ggcaactggc atcaagcctt tcacattctt caaccgtata
     3181 aatgcgcatt gaaagagggt cggaagcaag ttgcatgggt tccgcgaggc catcctgata
     3241 gtcagcgagt ttttccagcc acagcagcgc attgtagatg tcttcgcgat caaacccagc
     3301 gtcggtgaga tcacgctcca gtctgtcctg atccacgcgc agctcggctt cgttatggat
     3361 gtatgtttca aacaaataca ttagtacgtc gaacatggct tgccctcctt aatcggacat
     3421 agccgccggg tacagctgcg atccatcctg ctaactccag ttcgagtagc tgagccacta
     3481 ccgctggcac aggttggccg gcacgttcag cgacgacgtc aacaggtgtt acctcatctc
     3541 ctacgttagc caggagctca ggaaatggca atgccgcctc atcctgattt agtgaataaa
     3601 gtgaattttc cgccgtagtt ggcaaccagt gtaagccgta ttgcaaattt tccagaatat
     3661 cctccggcgt cgtcacaagc gtggcccctt gtttaattaa ccagtgcgtg ccttcgcttc
     3721 ccggactacc gatagggcct ggtaatgcaa aaacgtcccg cccctgttca agcgcgcagc
     3781 gcgccgtcac caacgaaccg ctgcgcaacg ccgcctcaat caccagtacg cctttgctca
     3841 gtccgctgat gatacggttt ctgcgaggaa aattttgcga tagcggaggc gttgaaagcg
     3901 gaaattctga gaccactgcg ccgccagtgg caatcaagtt ttcagccagc atggcatgtc
     3961 ggcgaggata aatctttgcc aagccattcc ctaacaccgc tacacttttt ccccccatac
     4021 tcatcgcggc gttgtgtgct acgccatcaa ttcctcgggc aaggccgctg gtgatcgtca
     4081 aaccgctttt cgcaaggctt tcgcaaagca gacgtcccca gcgttctcca taccaggagt
     4141 ggctccggct cccgacgacg gcaagttggc aggtatgcag acaggcagga tcgccgtcaa
     4201 taaaaatagc gccgggataa tcgtcaatag cacgcagttg aggaggataa atctcactat
     4261 ccgcacacag aaaatggtgc tgcggtagtt caagccagcg taacgtctca tcaagcacac
     4321 ctgctggaag ctgtaaaaaa cgttcagctt gccgcgcagt aagaccagcc tcctgaaggt
     4381 gcgtgcgatt tatctgaggc tggcgaataa gcgaattcgc catgttcaac atcgcctcgc
     4441 cataaaggtc gccgacgtac attaaacgta accaaatttc ggtacgggcc atcctttccc
     4501 tcccctgcca caagcagtct gaacaatctt tgcgattggt cactgatgct gtcaatcagg
     4561 tggggatttg tctagaatag aggtaataat cttttcaact cctgaacaca actctggata
     4621 attatgtcag ttttgcaagt gttacatatt ccggacgagc gccttcgcaa agtcgcaaag
     4681 ccggttgaag aagtgaatgc agaaattcag cgtatcgtcg atgatatgtt cgaaacgatg
     4741 tacgcggaag aaggtatcgg tctggccgca acgcaggtcg atatccacca gcggatcatc
     4801 gtgattgacg tttcggaaaa ccgcgacgag cgcctggtac tcattaaccc ggaattgctg
     4861 gagaaaagtg gcgaaacggg tatagaagaa ggctgtctgt cgatcccgga acagcgcgct
     4921 ttagtgccgc gcgccgagaa agtgaaaatc cgcgcgctgg atcgcaacgg caacccgttt
     4981 gagcttgaag cggatggttt gctggcaatc tgcattcagc atgagatgga tcacctggtc
     5041 ggtaaactgt ttatcgatta tttgtcgccg ctgaagcaac aacgtattcg tcagaaagta
     5101 gaaaaactcg accgcctgaa cgcccgggct taaaggacaa gaaccaacgt gtcagattca
     5161 ctacgtatta tttttgcggg tacacctgac tttgcagcgc gtcatctcga cgcgctgtta
     5221 acttctggac ataacattgt cggcgtattt acccaacccg atcgtccagc aggtcgcggc
     5281 aaaaagttga tgcccagccc ggtaaaagtg ctggcggaag aaaaaggcct gcccgttttc
     5341 cagcccgtgt cgcttcgtcc tcaggaaaac cagcatctgg tggctgactt acatgccgac
     5401 gtcatggttg tcgtagcata tggtctgatt ctcccaaagg cagtgctgga tatgccccgt
     5461 ctcggatgta tcaacgttca cggttcgctg cttccacgct ggcgcggcgc ggcgcctatt
     5521 cagcgctcac tctgggcagg cgatgcggaa accggcgtca caattatgca gatggatgta
     5581 gggctggata ccggcgacat gctgtataaa cttgcgtgcc cgattaccgc agaagatacc
     5641 agtggctcac tgtataataa gttggctgaa cttggcccac aggggttaat taccacacta
     5701 aaacaactgg cggacggcac agcgacgcct gaagcgcaga atgaagcgct ggtcactcat
     5761 gcggaaaagc tcagtaaaga agaagcgcgt atcgactggt ctctctccgc agcacagctg
     5821 gagcgttgca ttcgcgcctt taatccgtgg ccaatgagct ggctggaaat cgacggccag
     5881 ccggtaaaag tctggcaggc atccgtcatt gaggacgcca cgcagtcgct gccgggaacc
     5941 attctggccg cgacgaaaca gggcattcag gttgcaacag gcaaggggat attaaatttg
     6001 ctttcgcttc agcctgccgg caaaaaagcg atgagcgccc aggatctgtt aaattcacgc
     6061 cgggaatggt ttatccctgg taaccgcctt gcctgacggt cacgtcttta tacgcccggt
     6121 gttaccgggc atttttattt tatacatatg aaaaaacaaa acaatttacg tagtctggca
     6181 gcacaggccg ttgaactggt cgtcgaacag ggacaatcat taagtaatgt gctcccgccg
     6241 ctgcaacaaa aagtcgccga taaagacaaa gcgctacttc aggagctgtg ctttggcgtc
     6301 ctgcgcaccc tttcacagct ggaatggctg atcaataagc tgatgtctcg tccaatgacc
     6361 ggcaagcagc gtacagtgca ttacttaatt atggtcggct tttatcagtt gctgtacacc
     6421 cgcgtccctc cccatgcggc gctggctgaa accgttgaag gcgcggtctc catcaaacgt
     6481 ccgcagttga aagggttaat taacggcgtc ctgcgccagt tccagcgcca gcaggaaacg
     6541 ttgcttaatg agtttgcgac cagcgatgcg cgctttttac atcccggttg gctggtaaag
     6601 cgtttgcaaa atgcttaccc cacacagtgg caacgcatta ttgaagcgaa taaccagcgt
     6661 ccacctatgt ggctacgtgt aaatcgtaca caccacaccc gcgacggttg gcttggctta
     6721 cttgaagacg caggcatgaa gggatatccc catcccgatt atcccgacgc tgtgcgtctg
     6781 gaaacgccag ctccggtaca tgctttaccc ggttttgctg agggttgggt aactgtccag
     6841 gatgcctctg cgcagggatg tgcggttttt ctcgctcctc agaacggtga gcacatttta
     6901 gacttgtgcg ccgcgcccgg cggtaaaacc acgcatattc tcgaagtggc ccccgaagca
     6961 gacgtgttgg cggttgatat tgatgaacaa cggctctccc gcgtttacga caacctaaag
     7021 cgccttggga tgaaagcgac agttaaacaa ggggatggac gttatcccgc ccaatggtgc
     7081 ggcgagcagc agtttgaccg tattctgctg gatgcgccct gctccgcaac cggcgtcatt
     7141 cgccgtcatc cagatatcaa atggctgcgt cgcgatcgcg atatcgcgga actggcgcaa
     7201 ttacaggcgg aaattcttga tgccgtctgg ccgcgcctga agcccggcgg gacgctggtt
     7261 tatgccacct gttccgtact gccggaagaa aaccgcgatc agatcaaagc ctttttgcaa
     7321 cgcactcccg atgccgcgct cagcgaaacg ggaacacctg atcagccagg acagcaaaat
     7381 ctgccgggcg gcgaagaagg tgatgggttc ttttacgcta agctaatcaa gaagtgatga
     7441 gataacgggc cacgactgat gaaaattatc atactgggcg cagggcaagt tggtggaaca
     7501 ctggcggaaa acctggtcgg cgaaaacaac gacatcacgg tggttgatac caacggcgaa
     7561 cgattacgca gtttgcaaga taagttcgat ctacgcgtag ttcaggggca tggttcgcat
     7621 ccccgcgtgt tgcgcgaagc gggcgctgac gatgcggata tgctggtcgc tgtcaccagt
     7681 tcagatgaaa ctaatatggt tgcctgtcag gtagcctatt cactcttcaa caccccaaac
     7741 cgtatcgccc gcattcgctc cccggactat gttcgcgatg cggataaact ctttcattct
     7801 gaagcggttc cgattgatca tctgatcgcg ccggagcagt tggttatcga taatatttat
     7861 cgtctgatcg agtatccggg agcattacag gttgtaaact ttgccgaagg gaaagtcagt
     7921 ctggcagtag taaaagccta ctatggcggt ccactaatag gtaacgcgct ctcgacaatg
     7981 cgagagcata tgccgcatat cgatacccgc gttgccgcaa ttttccgtca tgacagacca
     8041 atccgtcctc agggctcgac tatcgtggaa gcaggggatg aagtcttctt tattgcggct
     8101 tcacagcata tccgtgcagt aatgagcgaa ttacagcgtc tggaaaaacc ctacaagcgc
     8161 atcatgctgg tgggcggcgg caatatcggc gccgggctgg caaggcgtct ggaaaaagac
     8221 tatagcgtta aattgatcga acgcgatcaa caacgcgccg cagaactggc tgagaagctg
     8281 caaaacacga tcgtcttttt tggcgacgct tccgatcagg aattgctggc ggaggagcat
     8341 attgatcagg tcgatctctt tatcgcagtc actaacgatg acgaagccaa tatcatgtcc
     8401 gcgatgttgg ctaagcggat gggcgccaaa aaagtgatgg tgctgattca gcgtcgagct
     8461 tatgtcgatc ttgtgcaggg tagcgttata gatattgcga tttctccgca gcaggccacc
     8521 atctctgcat tactgagcca tgtgcgtaaa gcagatatcg tcggcgtttc ctcactacgt
     8581 cgcggggttg ccgaagccat cgaagccgtc gcgcacggcg atgaaagcac ttcccgcgtg
     8641 gttggccgcg tcattgacga aataaaactg ccgccaggca ccattattgg cgcggtcgtt
     8701 cgcggtaatg atgtcatgat tgctaatgac aatttgcgca ttgaacaagg cgatcacgtc
     8761 attatgtttt tgaccgataa aaagtttatt accgacgtcg aacgtctgtt ccagccaagt
     8821 cctttcttcc tctaatttaa ggggcgctca ttcagcgccc tttttaattc cctttattta
     8881 tcaaggttta atttatttcg ctaaacagaa gccgtaaatg gaaaatgcct tagcatttgt
     8941 taaacttata acgtcagctg catagggaga ataaaaatga gttttattaa agaattccgc
     9001 gaattcgcga tgcgcgggaa tgttgtggat ttggcagtgg gtgtcattat tggcgcggca
     9061 ttcggtaaga ttgtttcttc actggttgcc gatatcatta tgccgccgtt gggattgtta
     9121 atcggcggga tcgactttaa acaatttgct tttacgttac gcgaagcgca gggagatatt
     9181 ccggcggtcg tcatgcatta cggcgtgttt atccagaacg tatttgattt tgtgattgtg
     9241 gcgtttgcta tctttgttgc cattaagctt atcaacagac tcaaccgtaa aaaagcagaa
     9301 gagccggcag ctccgcccgc gccttctaaa gaggaagtgt tattgggcga aatccgcgat
     9361 ctgctgaaag aacaaaataa ccgttcttaa taagcagaag gccagtggta aaaaagtcac
     9421 ttactttctt gccactggcc tcccagttcc cccggttacc gtgtttacct ttacgcagat
     9481 aacttccttt gcctttctta tttttttcaa cgcgttgcct gaaaagggga tcgtgtaaca
     9541 atgcctcgat ggcattgtcc tttatctgcc ctttcttatg ttgataacga ctcataatat
     9601 ctcccgtttg tataaattat acggcgcgag tgtagtcccg ccggttcaat aaatcaacat
     9661 actgatttcg ccccactggc cccctgttcc agggcttcca gaatggaaca atagacgcta
     9721 ctgtgggccg ttccgcaaca agcatcatta agcctttgta acgaacgctg catcgtttgc
     9781 agttccgcaa tcctggcttc aacctcctgc aatcgttctt gcacaatact ttttgactcc
     9841 tgacaggtat ggtgctcagg atcaattctg atcgataaaa gttcgcggat cgactcaagc
     9901 gtgaaaccca actgccgcgc ataacgaata aacttgagac gctgcagatc gttttcggta
     9961 tacagacgaa acccgccttc agtacgtacc tcatgatcca tcatctgctg tttttcatag
    10021 tagcgaatgg tatcaggcgt tacgtctgcc agctttgcca gctcaccaat gcgatacata
    10081 caagctccgt taattatcgt tgattttatg cagcagtttt tctgcatact caccgtgtaa
    10141 aaaatcggta ctcaacccag cctgccgaag ttttagttca agcagcgaga gctggcgact
    10201 aacctgatgg tattgagggt catcttcccg gatactgttg aggatatcaa gtaactgaat
    10261 agcgtctctg cgctgctcca gttcaggggg aagacagccc gcattcttca gtaagcgata
    10321 acccgcacga agttccgctg gcacatgaga atcatcatcc agaataagcg gttcgccgcg
    10381 gccaggcaga ttatcaaact cgcctttacg ctgtgcctcg ataatatgac gctctgccca
    10441 ctggtcaagt aaccacatac gtcgctccag ggattgaacg aaaagaatac aattattgta
    10501 gatatgtggg gttcaggagg atataaaaaa acccgccgaa gcgggttttt tacgttacta
    10561 cagattactc tgcagcagct tctgttttct ctgaacgatc aaccagctcg atgtatgcca
    10621 tcggcgcgtt gtcgcctgca cggaagccac acttcagaat gcgagtgtaa ccaccggcgc
    10681 ggctcgcgaa acgcgggccc agctcgttaa acagttttgc cacgatctcg ttatcacgag
    10741 tacgggcgaa tgccagacga cgattagcaa cgctatcagt cttggcaaga gtaatcagcg
    10801 gctcaactac gcgacgcagc tctttcgctt taggcagggt cgtcttgatg atttcatgac
    10861 gaaccagtga acctgccatg ttgcggaaca tagcctggcg atggctgctg ttgcggttca
    10921 gttgacgacc actcttacga tggcgcatga ccttatcctt ctcagtaaaa ccttaacctg
    10981 tgatccggtt actcgtcagc gatgcttgcc ggtggccagt tttccaggcg catacccaga
    11041 gacagtccac gggaagccag cacgtcttta atctcggtaa gagatttttt acccaggtta
    11101 ggcgtcttaa gaagctcaac ctcggtacgc tgtaccagat caccgatata gtggatagct
    11161 tctgccttga ggcagttagc agagcggaca gtcaattcca gatcgtcaac agggcgcagc
    11221 aggatcggat cgaattctgg tttctcttct ttcacttccg gttgacgtac atcacgtaaa
    11281 tcaacgaaag cttccagttg ttcagccagg atggttgccg cacgacgaat cgcctcttca
    11341 ggatcgattg tgccgttggt ttccatttcg atgaccagct tgtccaggtc ggtacgctgt
    11401 tctacacgcg ctgcttcaac attgtaggca atacgctcta cagggctgta gcaggcgtcg
    11461 accagcagac ggccgattgg gcgctcatct tcttccgaat gaattcgggt agaagccggc
    11521 acataaccac gaccgcgctg aactttgata cgcatactaa tagacgcgtt ttcatcggtc
    11581 aggtggcaga tcacgtgctg cggcttgacg atttcgacat ccccatcatg ggtgatatcg
    11641 gctgcagtca cagggccaat gccagattta ttcaaggtaa gaataacttc atctttaccc
    11701 tgaactctca ccgccagccc tttcaggttg agcaggattt ccaggatgtc ttcctgaacg
    11761 ccttctttgg tgctgtactc atgtagtaca ccatcaatct caacctcggt caccgcgcaa
    11821 cccggcatcg atgagagcag aatacggcgc agtgcgttac ccagagtatg gccgaagcca
    11881 cgctctaaag gctcaagggt caccttggcg tgcgtcgaac tcacttgctc gatatctacc
    11941 aggcgcggtt ttagaaactc tgtcacagaa ccctgcattg tgtcctctct ttggtactaa
    12001 gctttacttg gagtaaagct cgacgatcag gtgttcgtta atgtccgcag acagatcaga
    12061 acgctcaggc ttacgcttgt acgtaccttc catcttgcca gcatcaactt ccagccaggt
    12121 tggcttttca cgctgctcag ccagctccag agcggctttc acgcgagact gcttcttcgc
    12181 tttctcacga atgctaacaa cgtcattcgg actaacctga taagaagcga tgttaacaac
    12241 acgaccgttt accataattg ctttatggct aaccagctga cgtgcttctg cacgagtggc
    12301 gccgaagccc atacggtata caacgttgtc cagacgacct tccagcagag ccaacaggtt
    12361 ttcaccggtg ttgcctttca gacgtgctgc ttctttgtag tagttacgga actgacgctc
    12421 cagcacaccg taaatgcggc gaactttttg cttttcacgc aactgcacac catagtcaga
    12481 cagacgcggc ttacgcgcac cgtgctggcc aggagcttgt ccaattttac acttggtatc
    12541 gatcgcgcga acgccagact taaggaataa gtcggtgccc tcacgacggc tcagcttgag
    12601 cttaggaccc aaatatcttg ccattttctt tctccaacta acctggaaaa cgaagcgtta
    12661 tacgcgacgt tttttcggcg gacgacaacc gttatgaggg atcggagtca catcagtaat
    12721 attagtgatg cggaaaccag cggcgttcag agcacgaata gtagattcgc ggcctggacc
    12781 cggaccttta accataactt ccagattctt gataccgtat tctttcacgg cgtcagcgca
    12841 acgctctgct gcaacctgag ctgcaaacgg agtggatttg cgagaaccac ggaaaccgga
    12901 accaccggct gttgcccaac ccagcgcatt accctgacga tcggtaatag tcacgatggt
    12961 gttgttgaaa gaagcatgga tatgagccac gccgtcagag acttgttttc ttacacgttt
    13021 acgtgcgcaa actggtgcct ttgccattat tcaatcaccc cgattatttc ttgatcggtt
    13081 tgcacggacc cttacgggta cgagcgttgg tcttggtacg ctgaccgcga accgggagac
    13141 cacgacgatg acgcaaaccg cgatagcaac caagatccat caggcgcttg atgctcatgc
    13201 tgatttcacg gcgcagatca ccttcaacga caaatttggc aacttcgtca cgcagcgtgt
    13261 cgatttgttc ttcagacagc tcactgatct taacattttc agcgataccc gctgcagcca
    13321 ggatggcttt agaacgggtc ttgccgacac cgtagatcga agttaacgcg atcacggcgt
    13381 gtttctgatc aggaatgtta atgcctgcta tacgggccac tatgcactcc tactatttaa
    13441 tatgtacgta ccatgctgaa aagcccgttt tcaggatact caaatggaaa cgtacagaca
    13501 tacaaaagat tggctggcta atctagccag ctcaacccaa ctttgcaaga aaaatatgcg
    13561 aaaaaatcag ccttggcgct gtttatgctt cggctcggca ctgcaaatca cacggatgac
    13621 accatcacgc ttaacgattt tgcagttacg gcataatttc ttgacggaag cacgaacttt
    13681 catttttact ctccgtaact tctcaggcga ccaattaacg gccgtagcct ttcaggttcg
    13741 ccttcttcaa tgcagactca tactgactgg acatcatcag agtttgcact tgagccataa
    13801 agtccataat cacgacaaca acgataagca gtgaggtccc accgaagtag aacggcactt
    13861 tcattgcatc acgcatgaac tccgggatca ggcagataaa ggtaatatac agcgcaccaa
    13921 ccagggtcag gtgggtcatt actttatcga tatacttcgc cgtttgctct cccggacgaa
    13981 ttcctggtac aaatgcaccg gacttcttca ggttatctgc tgtttcacgc gggttgaaaa
    14041 ccaacgccgt gtagaagaaa cagaagaaga tgattgcaga cgcatagagt aacacataaa
    14101 gcggttgccc aggctgcaaa tacagcgaaa ttgttgtcag ccagttccaa ccagtaccgc
    14161 ccccgaacca tgacgctatg gtcgccggga acagaataat actggaagcg aagattgccg
    14221 ggattacccc cgccatattc actttcagcg gtaaatgtgt gctctgtgca gcatagacac
    14281 gacgaccttg ctgacgtttg gcgtagttta ccacaatacg gcgttgacca cgttcaacga
    14341 atactacaaa gaacgtcact gcaaatacta atactgcaac caacagcaac acgaggaagt
    14401 gcaggtcgcc ttgacgcgct tgctcgatag tatgggcaat ggctggcggg agtcccgcaa
    14461 cgataccagc gaagatgatg attgagatac cgttaccgat accgcgctca gtaatctgtt
    14521 cgccgagcca catcaggaac atggtccctg taaccagact tacaacagcg gtgaaataga
    14581 atgcaaagcc tggattcatc accaggccct gcataccagg catattcggc aaaccggtag
    14641 caataccgat cgactggaat atcgccagca ccagagtacc gtaacgggtg tactggctga
    14701 tcttacgacg accagactcc ccttctttct taatttctgc gagcgttgga tgaaccaccg
    14761 tcaacagctg gataatgatc gacgccgaaa tatacggcat gatccccagg gcaaagatag
    14821 aagcacggct gagagcacca ccagagaaca tgttaaacat ttcaatgatg gtgcctcgct
    14881 gttgctcaag cagtttggca agtacagcgg catcaatacc agggatcgga ataaaagagc
    14941 caatacggaa cacaatcagc gcgccgataa caaacagcag tctgcgtttc agctcaccta
    15001 agccaccttt ggcactttga aaatctaatc ccggttgttt agccatctgc tacttattcc
    15061 tcgattttac cgccagcagc ttcgatagca gcacgagcgc ctttagtaac acgcaggcca
    15121 cgaacagtta ccggagtagt gacttcgcca gccaggatca ctttcgcgaa ctcgatctgg
    15181 ataccgataa tgtttgccgc tttcagcgtg ttcaggtcta caacgccgcc ttctactttc
    15241 gccaggtcag acagacgaac ttcggctgta atcgctgctt tgcgagaagt gaagccgaat
    15301 ttcggcagac gacggtacag aggcatctga ccaccctcga aaccgcgacg tacgccaccg
    15361 ccagaacgag acttctgacc tttgtgacca cgaccaccgg ttttaccgag gccagaaccg
    15421 ataccacgac ccaggcgttt acccgccttt ttggagcctt cggccggaga cagagtattt
    15481 aaacgcatct cttactcctc aactttaacc atgaaggaaa ccgcgttgac cataccacga
    15541 acagcaggag tatcctcgcg ctctacggtg tggccaatac gacgcagacc caggccaagc
    15601 agcgttgcct tgtgtttcgg cagacgaccg attgcactgc gggtttgagt aattttaata
    15661 gtctttgcca tggtttattt ccccagaatt tcttcaacgg atttaccacg cttggcagcg
    15721 accatttctg gagaattcat attttccagg ccatcaatag ttgcacgaac cacgttgatc
    15781 gggttggtgg aaccgtatgc tttagccaga acgttatgaa ccccagcaac ttccagaacg
    15841 gcgcgcattg caccaccggc gatgataccg gtaccttcgg aagctggctg catgaataca
    15901 cgagaccccg tgtgaacacc tttaaccggg tgctgcaggg tgccgttgtt cagcgcgacg
    15961 ttaatcatat tgcgacgggc tttttccatc gctttctgga tcgctgctgg aacttcacgc
    16021 gctttaccgt aaccaaaacc tacgcgaccg ttaccatcgc ctactacagt cagagctgtg
    16081 aaggagaaaa tacgaccacc tttaacggtt ttagatacgc ggtttaccgc gatcagcttt
    16141 tcctgcagtt cgccagcttg tttttcgatg tgagccatct tacacctcta ccttagaact
    16201 gaaggccagc ttcacgggca gcatctgcca gtgcctggac acgaccatga tattggaacc
    16261 cggaacggtc aaaggacaca tctttgatgc ctttttccag agcgcgttca gcgacagctt
    16321 tacccacagc tgcagccgca tctttgttac cggtgtactt cagttgttca gcgatagctt
    16381 tttctacagt agaagcagct accagaactt cagaaccgtt cggtgcaatt acctgtgcgt
    16441 aaatatgacg cggggtacga tgtaccacca ggcgagttgc gcccagctct ttgagcttgc
    16501 ggcgtgcgcg ggtcgcacga cggatacgag cagatttctt atccatagtg ttaccttact
    16561 tcttcttagc ctctttggta cgcacgactt cgtcggcgta acgaacaccc ttgcctttgt
    16621 aaggctcagg acgacggtag gcgcgcagat ctgctgcaac ctggccgatc acctgcttat
    16681 cagcgccttt cagcacgatt tcagtttgag tcggacattc agcagtgata cctgccggca
    16741 gctgatggtc aaccgggtga gagaaaccta aagacaggtt tactacattc cctttaaccg
    16801 ctgcacgata acctacacca accagctgca gcttcttagt gaagccttcg gtaacaccga
    16861 taaccattga gttcagcagg gcacgcgcgg taccagcctg tgcccaaccg tctgcgtaac
    16921 catcacgcgg accgaaggtc agtgcattat ctgcatgttt aacttcaaca gcatcgttga
    16981 gagtacgagt cagctcgccg tttttacctt tgatcgtaat aacctgaccg ttgattttga
    17041 catcaacgcc ggcaggaaca acgaccggtg ctttagcaac acgagacatt ttttcctccg
    17101 attaggctac gtagcagata atttcgccac caagaccagc ctggcgcgct gcacgatctg
    17161 tcataacacc tttagaggta gaaacaactg cgatacccag accggccata actttcggca
    17221 gctcatcttt acgtttgtag atgcgcaggc ctgggcggct gacacgctga atgctttcta
    17281 caacagcttt accctggaaa tacttaagag tcagttccag ttccggcttg gtgtcgcctt
    17341 caactttaaa atcttcaata aaaccttctt ccttcagcac gttggcaatt gccactttca
    17401 gcttagagga aggcatggtg accgcagctt tgttcgcggc ctgaccgtta cggatacggg
    17461 tcagcatatc cgcgatcgga tcttgcatgc tcatctgtct ttactcccgt gattcaattg
    17521 gtgacaatta ccagctagcc tttttcagac ccggaatttc accgcgcata gcggcttcac
    17581 ggaccttaat acggctcaac ccgaacttcc gcaggaaagc gtgcggacga ccagtttgac
    17641 ggcagcggtt acgctgacgt gacgggctgg aatcacgcgg cagagtctgc agcttaagaa
    17701 ccgcattcca acgatcttcg tcggttgcgt tcacatcaga gatgatcgct ttcagttcag
    17761 cgcgtttcgc gaagtattta tcagctaaag ctacgcgttt tacttcgcgt gctttcattg
    17821 attgcttagc catttagtaa ccctacctta cttgcggaac gggaagtcaa aggcagccag
    17881 cagagcacgg ccttcttcgt cagatttcgc agtagtggta atggtaatat ccaaaccacg
    17941 aacgcggtcg actttatcgt agtcgatttc tgggaagatg atctgctcac ggacacccat
    18001 gctgtagtta ccacgaccgt cgaatgactt agcggacaag ccacggaagt cacggatacg
    18061 aggaacagca atagtgatca ggcgctcaaa gaactcccac atgcgttcgc cacgcagagt
    18121 tactttacag ccgatcggat agccctgacg gattttgaag cctgcaacag atttgcgtgc
    18181 tttggtgatc aacggttttt gaccggagat tgctgtcagg tctgctgctg cgttatccag
    18241 cagtttcttg tcagcgatcg cttcaccaac acccatgttc agggtgatct tctcgacccg
    18301 agggacttgc atgacagaat tgtagttaaa ctcagtcatg agtttgttaa ctacttcgtc
    18361 tttgtagtaa tcatgcagtt tcgccatcgt actactccaa attacttgat agtttcgctg
    18421 ttagacttga agaaacggac ttttttgccg tcttcgaatc taaagcctac acggtcagcc
    18481 ttgccggttg ccgtattgaa gattgcaacg ttagaaacct gaattgcagc ttctttttca
    18541 acgatgccgc ccggttggtt cagagccgga accggcttct ggtgtttctt aaccaggttg
    18601 ataccttcaa caatgacctt gccggaagac aggacattct taactttacc gcgtttacct
    18661 ttatctttac cggttaacac gataacttcg tcatcacgac ggattttcgc tgccatgatt
    18721 cgctccttag agtacttctg gtgccagaga gataattttc atgaacttct cgttacgaag
    18781 ttcacgagtt accggcccaa aaatacgcgt accgataggc tgctcgctgt tattgtttaa
    18841 aataacgcat gcattaccat cgaagcgaat gacagaaccg tccgggcgac gaacaccctt
    18901 cttggtgcgc accactaccg ccttcagcac atcacctttt ttgaccttac cacgcggaat
    18961 cgcttctttg atggtgatct taatgatgtc gcctacgcct gcgtagcgac ggtgcgagcc
    19021 acccagaacc ttgatacaca ttacgcgacg tgcaccggag ttgtcggcga cgttcagcat
    19081 agtctgttct tggatcattt tagtgctccg ctaatgtcaa ctactactga gacccgaaaa
    19141 tcaggtcgtt aaaaaaaccc catatcgagg gcgcggcatt ataacaccgc aaatcagata
    19201 tgggtagaaa aaataaacgg cccatcgctg agccgtttat tcgttgagaa tgcgtactgt
    19261 attacagaac cgctttctct acaacgcgaa ccagagtcca ggatttggtc ttggacagcg
    19321 gacggcattc gcggatttca accacgtcgc cgataccgca ttcgttgttc tcgtcatgta
    19381 cgtgcatttt ggtcgtacgc ttgatgaatt taccgtagat cgggtgtttc acaaaacgtt
    19441 cgatagcaac aacaatggat ttctccattt tgtcgctaac cacgcgacct tgcagagtac
    19501 ggattttatc ggtcattacg cacccgcctt ctcagtcagt aaagtcttaa cgcgtgcgac
    19561 atcacgacgc acttgcttca acaggtgaga ctgttgcagc tggccacttg cagcctgcat
    19621 acgcaggttg aactgctcac gcagcaggtt cagtagctcg gtgttcagct cttcaacgct
    19681 cttctcacgc agctcttttg ctttcattac atcaccgtct tagttacaaa ggtggtttta
    19741 atcggcagtt tcgctgctgc cagcttgaat gcttcacggg ccagctcttc cggtacgccg
    19801 tccatttcat acaggacttt acccggctga atcaaggcaa cccaatactc cacgttacct
    19861 ttacctttac ccatacgcac tgccagcggc ttttcagtga tcggtttgtc cgggaataca
    19921 cggatccaga tcttaccttg acgcttaact gcacgggtca tagcacgacg tgctgcttcg
    19981 atctgacggg cagtcagacg accacggcca acagctttca ggccgaagct gccgaagcta
    20041 acatccgcgc ctgcagccag accacggttg cggcctttgt gcattttacg gaattttgta
    20101 cgctttggtt gtaacatcag cgacgctcct tatttacggc ctttacgctg ctgctttttc
    20161 ggttgagcag ccggtttttc cggttgttca acagcagcca taccacccag gatctcgcct
    20221 ttgaagatcc acactttaac gccgattaca ccataagtgg tgtgcgcttc agaggtgttg
    20281 tagtcgatgt cagcacgcag agtgtgcagc ggtacgcgac cttcgcggta ccattcggta
    20341 cgtgcgattt ccgcgccgcc cagacggccg ctaacttcaa ctttgatacc tttagcgccc
    20401 agacgcatgg cgttctgtac agcacgcttc atcgcacgac ggaacataac gcgacgttcc
    20461 agctgagaag tgatgctgtc agcaaccagt ttagcgtcca gttcaggttt acgaacttcg
    20521 gcgatgttga tctgtgcagg aacgccagcg atatccgcta cgaccttacg cagtttttct
    20581 acgtcttcac cttttttacc gataacgata cccgggcgag cggtgtgaat agtcacacgg
    20641 atgctcttag ccggacgctc gataacgata cgagatacag acgctttagc cagttccttc
    20701 gtcaggtact gacgtacttt aaaatcgctg tccaggttgt cagcgaattc tttggtgttc
    20761 gcaaaccagg tagagttcca tggttttaca atacccaggc gaataccatt aggatgtact
    20821 ttctgaccca ttgctagtct ccagagtctc agcgatcgga cacaaccaca gtgatgtggc
    20881 tggtgcgctt caggatgcga tctgcacgac cttttgcacg cggcataatg cgcttcatgc
    20941 tcgggccttc gtctacgaaa attttcgtaa ctttcagatc gtcaatgtca gcgccatcgt
    21001 tgtgttcagc gttagcaatg gcagattcca gaactttctt gaccagtaca gccgctttct
    21061 tgttggtgta ggtcagaata tccagagcct gcgacacttt cttaccgcga atcaggtcag
    21121 caacaaggcg aaccttctga gcagaagaac gagcatggcg atgtttagcg atagtttcca
    21181 tctcttcctc ctaccttatt tcttcttcgc ttttttatca gcagcgtggc cgcgataagt
    21241 acgagtcggt gcgaattcac ccagtttgtg accgaccatt tcgtcggaaa caaataccgg
    21301 aacgtgctga cgaccattat ggacagcgat ggtcaaaccg atcatgttag gaaagatcgt
    21361 tgaacgacgg gaccaagtgc gcaggggctt cttgtctccg ctttccaccg ctttctctac
    21421 cttcttcagc aagtgcaggt caataaaagg acctttcttg agagaacgtg gcatggctta
    21481 tcctctaaaa ttatttgcta cggcgacgta cgatgaattt atcagtacgc ttgttgctgc
    21541 gggtcttctt acctttggtc tgaacgcccc acggagttac cgggtgctta ccaaagttac
    21601 gaccttcacc accaccatgt gggtggtcta ctgggttcat cgcagtaccg cgaacggtag
    21661 gacgaacgcc acgccagcgt gcagcacctg ctttacccag aacgcgcagc atatgctcag
    21721 cattgccaac ttcgcccagg gttgcacggc agtctgcttc gactttacgc atttcaccag
    21781 aacgcagacg cagggtgaca taagcgccat cgcgagcaac gatctgaacg taagtaccag
    21841 cggaacgcgc cagctgaccg cctttacctg gtttcatttc tacgttatga acggtagaac
    21901 caaccgggat attgcgcatc ggcagggtgt tgcctgcttt gattgcagca tcaacgccag
    21961 actgaatctg gtcgccagct ttcaggcctt tcggggccag gatgtaacgg cgttcgccgt
    22021 ctttgtacag aaccagcgcg atgttcgcgg aacggttcgg atcgtactca agacgttcaa
    22081 caactgccgg gataccgtct ttgttgcgtt tgaagtcaac aatacgataa gcctgtttgt
    22141 gaccaccacc gatatgacga gtggtgatac ggccattgtt gttacgacca ccggatttgc
    22201 tgtttttttc aaccagcgga gcaaaaggtt tgcccttgtg cagctctggg ttgaccactt
    22261 taacgacgtg gcgacgaccc ggagatgtcg gtttacattt aacaactgcc attgtattac
    22321 tcctccgact tactcagcgc cgccgacgaa gtccagattc tggccttctt tcagggtgac
    22381 gtaagctttt ttccagtcgc tacgacgacc gatacgctgt ccgtgacgtt taactttccc
    22441 tttaacgacc agggtgttaa cgacttcgac ttcgacttca aacagtttct gcacagcagc
    22501 tttgatttct gctttggtcg cgtctttagc aactttgaga acgatggtgt tggttttttc
    22561 catcgcagta gacgcttttt cagaaacgtg cggtgcgcgc agcaccttca gcagacgttc
    22621 ttcacgaatc atgccagcat ctcctcaact tgcttaacag catcagcagt cattacgact
    22681 ttgtcgaagg cgatcaggct aaccgggtcg ataccagtcg catcgcgtac gtcaaccttg
    22741 tgcaggttac gtgcggccag gaacaggttc tcgtccagct caccggtgat gatcagcaca
    22801 tcttccagag ccatgtcttt cagtttctgt gccagcagct tagttttcgg cgcttctaca
    22861 gagaacttct cgacaacgat cagacgatcc tgacgtacca gttcggacag gatgcttttc
    22921 agcgcgccgc ggtacatctt cttgttaact ttttgactgt ggtcctgcgg acgagcagcg
    22981 aaggtcacgc caccggaacg ccagatcggg ctcttgatag aacctgaacg cgcacggcca
    23041 gtgcctttct ggcgccacgg ttttttaccg gaaccagtta cttcagcacg agtcttctga
    23101 gcacgagtac cctgacgagc accagctgca taagcaacaa caacctggtg aaccagcgct
    23161 tcgttgaaat cacgaccgaa ggtagtttcg gaaacagtca gcgcgctctg cgcgtctttc
    23221 aatactaatt ccattgctat ccccttacgc cttcacagct ggtttaacga tcaggtcgca
    23281 accggttgca cccggaacac cacccttaac cagcagcagg ttgcgctcag cgtcaacgcg
    23341 tactacgtca aggctctgaa cggttacgcg ctcattaccc atctgacctg ccattttctt
    23401 gcctttgaac actttgcccg gagtctggtt ctgaccgata gaacccggaa cgcggtgaga
    23461 caaggagtta ccgtgagtag cgtcctgggt acggaagttc cagcgcttaa cggtaccagc
    23521 gaaaccttta cctttagagg taccggttac gtcaactttt ttaacgtcag caaacagttc
    23581 aacgctgatg ctctgaccta cggtgtattc ttcgccttca gccagacgga attcccacag
    23641 accacggcca gcttctacgc cagctttagc aaagtgaccc gcttccggct tggtgacacg
    23701 gttagctttt ttagcacccg tagtaacctg aacagcgcgg tagccatcgt tagccaggtc
    23761 tttaacctga gtaacacggt ttgcttcaac ttcgattacg gttactggga tagagacgcc
    23821 atcttcagtg aagatgcggg tcatacccac ttttttaccg actaaaccaa tcattgtatc
    23881 aacctctcaa tcgctcgatg acctgattaa cccaggctga tctgcacgtc tacaccggca
    23941 gctaggtcca gacgcatcag agcatcaacg gttttctcgg ttggctcaac gatgtcaacc
    24001 agacgcttgt gagtgcgaat ttcgtactga tcgcgcgcat ctttgttaac gtgcggagag
    24061 atcagaacgg taaagcgctc tttgcgggtc ggcagcggga tcggaccgcg aacctgcgca
    24121 ccagtgcgct tggcagtctc gacgatttcc gcggttgatt gatcgatcag acgatgatca
    24181 aacgctttca ggcggatacg gattctttgg ttctgcatga gaccagagct ccaattattt
    24241 tataaacgaa aatgattact cctcacaccc attacgattg atgggagagt gtaaccgttc
    24301 ttacgtagct ccccgattgg gagcattgtt aaatagccaa atcggctatt cgaggttcaa
    24361 atcgaacctg ccgtcaatta cgacaagccc gcgcattata cgtaaatctc agcctgacgc
    24421 aagtgtcgga tagaaattaa gcgctttatt cttatgcgag catgattcca gatggtacgc
    24481 atgggatggc gacgcgcatc ttttctttgg aaggcatcag gcaaacctgg caatacgtcg
    24541 ttgtcgctgt cgcataaatc tataaaggtg agcacaaacc ttgacgagga tttgcttatg
    24601 tttgttgccc tcccctttct cattttttat gcgtcgttct ctttattact tggcatatac
    24661 gacgcgcgta ccggtctgct acctgaccgg tttacctgtc cattactgtg gggtggtctg
    24721 ctttatcacc agatttgcct gccggagcgt ttaccggatg cgctttgggg cgctatcgcc
    24781 ggctatggcg gattcgcgtt aatttactgg ggctatcgcc tgcgttatca gaaagagggg
    24841 cttggatatg gcgacgtcaa gtaccttgct gccttagggg cgtggcattg ttgggaaaca
    24901 ctgccgttac tggttttcct tgccgctatg ttggcctgtg gcaggtttgg cgtcgcgcta
    24961 ctggtgagag gtaaatcggc attaataaac ccgctacctt ttgggccatg gctggcggtg
    25021 gcgggtttca taacaggttg gaaagttttc tttccagacg gttaatcggt aaccttaatt
    25081 tgtgattgca gataattttg cataccaagt ttggcaatca aatccagctc agtttccagc
    25141 cagtcgatgt ggccttcctc gtcggcaaga atttcaatca tcatatcccg gctgacataa
    25201 tcatgaacgt tatcggcata ggctattgcc tcacgtagat cttttgcgcc ttccagttcg
    25261 agccggagat ccgatcgtag catctcttcg acatcttcac cgatgcccag cttgcccaga
    25321 tcctgtaggt tcggtatgcc ttccagaaat aaaatacgct caatatactt atcggcgtgt
    25381 ttcatctcat caatggattc atggtactca acatcattaa gccgggtcag cccccagttt
    25441 ttgaacatac gggcatgaag aaaatactga ttaattgcga caagctcatt tcccaatagt
    25501 ttattgagat aatttatgat tttaacatca cctttcattt tatagtccct ccgcttccac
    25561 tctctagagc gtagatgggg ctacagggat gtcaaaaaaa agagtgtgac tcaggcgatc
    25621 tctttaaatt ccggcatttg cgttaactca tcctgcatca cttctcgcgc ggcgcgaata
    25681 cacttaccac attgatttcc cacaggaata aatttacgca actgttgaaa tgactgtgga
    25741 tgaaattgtc gtacagcctg gcggattttt ttatcgctta taccattaca caaacaaacg
    25801 tacatgatcg ctcccgttca atttccgcac aaagtgtaaa tgagaatggt tatgattaca
    25861 atagcacaaa gcgatttacg ccacgggaga agcgttaaaa aaggcaaata aatataacag
    25921 cggctaaata gcaggcaaca aaaagggcgc cgaagcgccc tcttcaattc aaaactaatt
    25981 aacgagtaat tagcccagaa ctttagcaac aacgcccgcg ccaacggtac ggccgccttc
    26041 acggattgcg aaacgcagac cgtcgtccat tgcgatcggg tggatcaggg taacaaccat
    26101 tttgatgttg tcgcccggca ttaccatctc tacgccttcc ggcagttcga tggtgccagt
    26161 cacgtcagta gtacggaagt agaactgcgg acggtagcct ttgaagaacg gagtatgacg
    26221 gccgccttca tctttggaca gaatgtacac ttcagattcg aacttggtgt gtggcttgat
    26281 ggtgcccggc ttagccagta cctgaccacg ttcgatttct tcacgtttga taccacgcag
    26341 cagaacacct acgttctcac c
//
LOCUS       DAJVSD010000036        25844 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.036, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000036 DAJVSD010000000
VERSION     DAJVSD010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 25844)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25844)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25844
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.036"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(99..800)
                     /gene="fre"
                     /locus_tag="OQP62_001265"
     CDS             complement(99..800)
                     /gene="fre"
                     /locus_tag="OQP62_001265"
                     /EC_number="1.5.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-flavin reductase"
                     /protein_id="HCS1720861.1"
                     /translation="MTTLSCKVTSVEAITDTVYRVRLVPDAAFSFRAGQYLMVVMDER
                     DKRPFSMASTPDEKGFIELHIGASELNLYAMAVMDRILKDREIVVDIPHGDAWLRDDE
                     ERPLILIAGGTGFSYARSILLTALARNPARDVTIYWGGREEKHLYDLSELEALSVNHP
                     NLRIEPVVEQPEEGWRGRTGTVLTAVLQDYGTLAGHDIYIAGRFEMAKIARDLFCHER
                     NAREDRLFGDAFAFI"
     gene            complement(886..2364)
                     /gene="ubiD"
                     /locus_tag="OQP62_001266"
     CDS             complement(886..2364)
                     /gene="ubiD"
                     /locus_tag="OQP62_001266"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HCS1720862.1"
                     /translation="MDAMKYHDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLR
                     AGGPALLFENPKGYAMPVLCNLFGTPKRVAMGMGQDDVSALREVGKLLAFLKEPEPPK
                     GFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIASGDDVDLTRLPVMTCWPDDAAPLIT
                     WGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDFQEWLAARPGERFPVS
                     VALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCLSNDLEVPASAEIILEGY
                     IEPGEMAPEGPYGDHTGYYNEVDNFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGV
                     ALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTMKKQYAGHAKRVMMGVWSFLRQF
                     MYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSK
                     MGLDATNKWPGETQREWGRPIVKDPEVTARIDAIWDELAIFK"
     gene            2550..3038
                     /gene="rfaH"
                     /locus_tag="OQP62_001267"
     CDS             2550..3038
                     /gene="rfaH"
                     /locus_tag="OQP62_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription/translation regulatory transformer
                     protein RfaH"
                     /protein_id="HCS1720863.1"
                     /translation="MQSWYLLYCKRGQLQRAQEHLERQAVSCLTPMITLEKMVRGKRT
                     FVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPE
                     GVVDPETPYPGDSVIITEGAFEGLKAIFTEPDGETRSMLLLNLLNKEVKQSVKNTGFR
                     KI"
     gene            complement(3046..3828)
                     /gene="tatD"
                     /locus_tag="OQP62_001268"
     CDS             complement(3046..3828)
                     /gene="tatD"
                     /locus_tag="OQP62_001268"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462861.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' ssDNA/RNA exonuclease TatD"
                     /protein_id="HCS1720864.1"
                     /translation="MFDIGVNLTSSQFAKDRDDVVARAFAAGVKGMLLTGTNIHESQQ
                     ALKLARRYPHCWSTAGVHPHDSSQWSSASEDAIIALANQPEVVAIGECGLDFNRNFST
                     PQEQERAFQAQLQIAAELQMPIFMHCRDAHERFLALLDPWLDSLPGAILHCFTGSRQQ
                     MQACVDRGLYIGITGWVCDERRGLELRELLPFIPAEKLLIETDAPYLLPRDLTPKPTS
                     RRNEPAYLPHILERIALWRGEDPQWLAAMTDANARTLFEVVF"
     gene            complement(3870..4649)
                     /gene="tatC"
                     /locus_tag="OQP62_001269"
     CDS             complement(3870..4649)
                     /gene="tatC"
                     /locus_tag="OQP62_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatC"
                     /protein_id="HCS1720865.1"
                     /translation="MAVEDTQPLITHLIELRKRLLNCIVAVLLIFLALIYFANDIYHL
                     VAAPLIKQMPQGATMIATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKH
                     ERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLTHTAPEGVQVSTDIASYLSFVMA
                     LFMAFGVAFEVPVAIVLLCWMGITTPEDLRKKRPYILVGAFIVGMLLTPPDVFSQTLL
                     AIPMYCLFEIGVFCSRFYVGKRRTRDEDNEAETEKAEHTED"
     gene            complement(4652..5200)
                     /gene="tatB"
                     /locus_tag="OQP62_001270"
     CDS             complement(4652..5200)
                     /gene="tatB"
                     /locus_tag="OQP62_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HCS1720866.1"
                     /translation="MFDIGFSELLLVFVIGLIVLGPQRLPVAVKTVAGWIRALRSLAT
                     TVQNELTQELKLQEFQDSLKKVEKASLENLTPELKASMDELRQAAESMKRTYSANDPE
                     QASDEAHTIHNPVVKGNETQHEGVTPAAAETQASAPEQKPEPVKANVPESTETASVAA
                     IDAEKKSAAPVVESSPSSSDKP"
     gene            complement(5204..5458)
                     /gene="tatA"
                     /locus_tag="OQP62_001271"
     CDS             complement(5204..5458)
                     /gene="tatA"
                     /locus_tag="OQP62_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HCS1720867.1"
                     /translation="MGGISIWQLLIVAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMS
                     DDDAKQDKTSQDADFTAKSIADKQGEAKKEDAKSQDKEQV"
     gene            complement(5664..7304)
                     /gene="ubiB"
                     /locus_tag="OQP62_001272"
     CDS             complement(5664..7304)
                     /gene="ubiB"
                     /locus_tag="OQP62_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HCS1720868.1"
                     /translation="MTPGEVRRLYFIIRTFLSYGLDELIPRMRLTLPLRLWRYSLFWM
                     PNRHKDKLLGERLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDG
                     RLAKAQIEEAMGGLPVEAWFDDFDIQPLASASIAQVHTARLKSNGKEVVIKVIRPDIL
                     PVIQADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRR
                     NFENSPMLYIPEVYSDYCSQNMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVKVFF
                     TQVFRDSFFHADMHPGNIFVSHEHPENPQYIGIDCGIVGSLNKEDKRYLAENFIAFFN
                     RDYRKVAELHVDSGWVPPDTNVEDFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTAR
                     RFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALTRAL
                     KEKAPFWVEKMPEIPELVYDSLRQGKYLQHSVDKIARELQVNHVRQSQSRYLLGIGAT
                     LLLSGSFLLVNRPEWGLMPGWLMVGGVVVWLVGWRKTR"
     gene            complement(7301..7906)
                     /gene="ubiJ"
                     /locus_tag="OQP62_001273"
     CDS             complement(7301..7906)
                     /gene="ubiJ"
                     /locus_tag="OQP62_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis protein UbiJ"
                     /protein_id="HCS1720869.1"
                     /translation="MPFKPLVTAGIEGLLNTFLYRSPALKSARTRLQGKVLCVKLKGF
                     STPLVLVFSERQVDVLGAWEGEADCTVITQASVLPKLRDRQQLAALIRSGELEVQGDI
                     QVVQNFVALADLAEFDPAELLAPYTGDIAAESIGKVVRGGAKFLRHGFQRQQRYAAEA
                     ITEEWRMAPGPLEVAWFAEETAAVERAVDSLTTRLEKLGAK"
     gene            complement(7916..8671)
                     /gene="ubiE"
                     /locus_tag="OQP62_001274"
     CDS             complement(7916..8671)
                     /gene="ubiE"
                     /locus_tag="OQP62_001274"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HCS1720870.1"
                     /translation="MVEDSQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMS
                     FGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRMVGETGKVILADINDSMLK
                     MGREKLRNIGVIGNVEYVQANAEALPFPDNTFDCITISFGLRNVTEKEKALRSMFRVL
                     KPGGRLLVLEFSKPIIEPLSKAYDAYSFHILPRIGSMVANDADSYRYLAESIRMHPDQ
                     DTLKAMMQDAGFESVDYYNLTAGVVALHRGYKF"
     gene            complement(8767..10197)
                     /gene="rmuC"
                     /locus_tag="OQP62_001275"
     CDS             complement(8767..10197)
                     /gene="rmuC"
                     /locus_tag="OQP62_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HCS1720871.1"
                     /translation="MDITLMISAVVALAAGAVIGWLATKAHADQIRADLIEERRELDI
                     ELSAARQQLAQEAHWRSECELLNNELRSLHSINTSLEADLREVTTRLEATQQHAEDKI
                     RQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLTPLREQLDGFRRQVQES
                     FGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKAQGNWGEVVLARVLEAS
                     GLREGYEYETQVSIENDARSRMQPDVIVRLPQGKDVVIDAKMTLVAYERYFNAEDDYT
                     REAALQEHIASVRNHIRLLGRKDYQQLPGLRSLDYVLMFIPVEPAFLLALDKQPELIT
                     EALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQHIADRASKLYDKMRLFVDDMSA
                     IGQSLDKAQDNYRQAMKKLASGRGNVLAQAEAFRGLGVEIKREINPDLAEQAVTQDEE
                     YRLRSIPEGRQDEHYPNDERVKQQLS"
     gene            complement(10337..11098)
                     /gene="udp"
                     /locus_tag="OQP62_001276"
     CDS             complement(10337..11098)
                     /gene="udp"
                     /locus_tag="OQP62_001276"
                     /EC_number="2.4.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine phosphorylase"
                     /protein_id="HCS1720872.1"
                     /translation="MSKSDVFHLGLTKNDLQGAQLAIVPGDPERVEKIAALMDKPVKL
                     ASHREFTSWRAELDGKAVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHI
                     NVGDVLVTTASVRLDGASLHFAPMEFPAVADFACTTALVEAAKSIGATTHVGVTASSD
                     TFYPGQERYDTYSGRVVRRFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAG
                     VIVNRTQQEIPNAETMKQTESHAVKIVVEAARRLL"
     gene            11357..12169
                     /locus_tag="OQP62_001277"
     CDS             11357..12169
                     /locus_tag="OQP62_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HCS1720873.1"
                     /translation="MTTTHPSGFAPAASPLAPTMIHTPDGAISAGITSIPSQGDDMPA
                     YYARPKASDGALPVVIVVQEIFGVHEHIRDICRRLALEGYLAIAPELYFREGDPNDFA
                     DIPTLLSGLVAKVPDSQVLADLDHVASWASRNGGDAHRLMITGFCWGGRITWLYAAHN
                     PQLKAAVAWYGKLVGDTSLNSPKHPVDIATDLNAPVLGLYGGQDTSIPQESVETMRQA
                     LRAANAKAEIVVYPDAGHAFNADYRPGYHEASAKDGWQRMLEWFAQYGGKKG"
     gene            complement(12245..13543)
                     /locus_tag="OQP62_001278"
     CDS             complement(12245..13543)
                     /locus_tag="OQP62_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001785009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HCS1720874.1"
                     /translation="MAVAGCHVMAKPGGAICNIDCTYCFYLEKEALYPERNKNWRMSD
                     ETLEQFIRQHIAAQSGDRIDFAWQCGEPTMMGLPFFRRVVALCEKYGDGRKITHALQT
                     NGILVNDEWARFFAEQHFLIGLSIDGPASLHNHYRLNRAGKGTHEQVVAAMARLKAHH
                     VDFNTLTVVGKHNVGHAADVYEFLLAAGSRFIQFIPLVERMSTDNSSVLNLVMPGESA
                     AKLAPWTVPSWQYGEFLNQIFDIWVRRDVDRVYVQMFDVALAAWTAQQPVLCVHSETC
                     GHAFALESNGDLYNCDHFVYPEHLLGNIHQHSIKTLNNSERAIAFGEAKRETLTADCR
                     RCDYRFACHGGCPKHRFAVSPSGHPAHNYLCTGYKHFFQHVTPYMNVWRELLAQGYPM
                     ASIMRWLAQDARKDTGAVSRNHLCPCGSGKKYKNAVVKHS"
     gene            complement(13926..16190)
                     /gene="metE"
                     /locus_tag="OQP62_001279"
     CDS             complement(13926..16190)
                     /gene="metE"
                     /locus_tag="OQP62_001279"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HCS1720875.1"
                     /translation="MTILTHTLGFPRVGLRRELKKAQESYWAGNTTREALLAVGRELR
                     ARHWEQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNNDGSVDIDTLFRIGRG
                     RAPTGEPAAAAEMTKWFNTNYHYIVPEFSKGQQFRLTWTQLLEEVDEALALGHKIKPV
                     LLGPVTYLWLGKVKGEPFDRLTLLKDILPVYQHVLAELAKRGVEWVQIDEPALVLELP
                     QAWLDAFKPAYDALAGQVKLLLTTYFEGVTPNLDTIIVLPVQGLHVDLIHGKDDVVEL
                     HQRLPVDWLLSAGLINGRNVWRADLTEKYAQINAIVGKRALWVASSCSLLHSPIDLSV
                     ETRLDTEVKSWFAFALQKCGELALLRDALNSGETAALEEWSVPIQARRHSHRVHNAAV
                     EKRLAAITAQDSQRENPYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRGLRLDFKKG
                     NLDANNYRTGIAEHIKQAIIEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGW
                     VQSYGSRCVKPPVVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPRE
                     DVTRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLEWGVEA
                     FRINAAVAKDETQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESFEAFDY
                     PNEIGPGVYDIHSPNVPSVEWIEALLKKAAQRIPAQRLWVNPDCGLKTRGWPETRAAL
                     ANMVKAAHNLRQAK"
     gene            16439..17392
                     /gene="metR"
                     /locus_tag="OQP62_001280"
     CDS             16439..17392
                     /gene="metR"
                     /locus_tag="OQP62_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MetR"
                     /protein_id="HCS1720876.1"
                     /translation="MIEIKHLKTLQALRNSGSLAAAAAVLHQTQSALSHQFSDLEQRL
                     GFRLFVRKSQPLRFTPQGEVLLQLANQVLPQISRALQACNEPQQTRLRIAIECHSCIQ
                     WLTPALENFRASWPQVEMDFTSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFD
                     FEVRLVLAPDHPLASKTQITPEDLASETLLIYPVQRSRLDVWRHFLQPAGISPLLKSV
                     DNTLLLIQMVAARMGIAALPHWVVESVERQGLVVTKTLGDGLWSRLYAAVRDGDQRQA
                     VTEAFIRSTRDHACDHLPFVRSAERPIFDAPTAKPGSQPRL"
     gene            complement(17280..18179)
                     /locus_tag="OQP62_001281"
     CDS             complement(17280..18179)
                     /locus_tag="OQP62_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1720877.1"
                     /translation="MALLIITTILWAFSFSLFGEYLAGHVDSYFAVLIRVGLAALVFL
                     PFLRTRGHNLKTISLYMLVGAMQLGIMYMLSFHAYLYLTVSELLLFTVLTPLYITLIY
                     DVMSQRRLRWGYAFSALLAVIGAGIIRYDRVTDHFWVGLLLVQLSNISFAIGMVGYKR
                     LMETRPMPQHNAFAWFYLGAFLVAAVAWSLLGNAQKLPETTLQWSILVFLGVVASGIG
                     YFMWNYGATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPSFITGAAVILASLWVH
                     RKWVAPRSAQTADDRRRDPASSE"
     gene            complement(18260..19060)
                     /gene="yigL"
                     /locus_tag="OQP62_001282"
     CDS             complement(18260..19060)
                     /gene="yigL"
                     /locus_tag="OQP62_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar/pyridoxal phosphate phosphatase YigL"
                     /protein_id="HCS1720878.1"
                     /translation="MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFATGR
                     HHVDVGQIRDNLEIKSYMITSNGARVHDTDGNLVFTHNLDSDIASDLFGVVNANPDIV
                     TNVYRDDEWFMNRHRPDEMRFFKEAVFNYSLFEPALLEPEGVSKVFFTSDTHEKLLPL
                     EQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAQAMGYSLKECIAFGDGMND
                     AEMLTMAGKGCIMGNAHQRLKDLYPELEVIGINADNAVPHYLRDLFLR"
     gene            complement(19076..20092)
                     /gene="pldB"
                     /locus_tag="OQP62_001283"
     CDS             complement(19076..20092)
                     /gene="pldB"
                     /locus_tag="OQP62_001283"
                     /EC_number="3.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipase L2"
                     /protein_id="HCS1720879.1"
                     /translation="MFQQQNDWETRENAFAAFAMGPLTDFWRQREEAEFIGVDNIPVR
                     FVRFRNDSNDRTIVICPGRIESYVKYAELAYDLFHLGFDIFIIDHRGQGRSGRMLSDP
                     HRGHVDHFNDYVEDLAAFWQQEIEPGSWRKRYILAHSMGGAIATLFLQRHRVRCDAIA
                     LTAPMFGIVIRLPSFMVRHILDWAEGHQRIREDYAIGTGQWRALPFGMNALTHSRQRY
                     QRNLRFYADEPQLRVGGPTWHWVREGILAGEQVLAGASDDTTPTLLIQAEEERVVDNR
                     THDRFCEIRAAAGYPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVEFFNKPNLSSG
                     NRFA"
     gene            20203..20823
                     /gene="rhtB"
                     /locus_tag="OQP62_001284"
     CDS             20203..20823
                     /gene="rhtB"
                     /locus_tag="OQP62_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine/homoserine lactone efflux protein"
                     /protein_id="HCS1720880.1"
                     /translation="MTFEWWFAYLLTSTLLSLSPGSGAINTMTTSINHGYRGAAASIA
                     GLQTGLGIHIVLVGVGLGTLFSRSLIAFEILKWAGAAYLIWLGIQQWRAAGAIDLHTL
                     AQTQSRGRLFKRAIFVNLTNPKSIVFLAALFPQFIMPQQPQLAQYLILGVTTIVVDMI
                     VMTGYATLAQRIAAWIKGPKQMKALNKAFGSLFMLVGALLASARHA"
     gene            complement(20863..21483)
                     /gene="rhtC"
                     /locus_tag="OQP62_001285"
     CDS             complement(20863..21483)
                     /gene="rhtC"
                     /locus_tag="OQP62_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine export protein RhtC"
                     /protein_id="HCS1720881.1"
                     /translation="MLMLFFTVAMVHIVALMSPGPDFFFVSQTAVSRSRKEAMMGVLG
                     ITCGVMVWAGVALLGLHLIIEKMAWLHTIIMVGGGLYLCWMGYQMLRGALKKQDAAAS
                     SPHIELAQSGRSFLKGLLTNLSNPKAIIYFGSVFSLFVGDNVGAAARWGIFALITLET
                     LAWFTVVASLFALPKMRRGYQRLAKWIDGFAGALFAGFGIHLIISR"
     gene            complement(21547..23376)
                     /gene="recQ"
                     /locus_tag="OQP62_001286"
     CDS             complement(21547..23376)
                     /gene="recQ"
                     /locus_tag="OQP62_001286"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026263.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HCS1720882.1"
                     /translation="MAQAEVLNLESGAKQVLQETFGYQQFRPGQEAIIDTALSGRDCL
                     VVMPTGGGKSLCYQIPALLLDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSRE
                     QQLEVMAGCRTGQIRLLYIAPERLMLDNFLDHLAHWNPVLLAVDEAHCISQWGHDFRP
                     EYAALGQLRQRFPALPFMALTATADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLM
                     EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRA
                     DVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA
                     EAMLFYDPADMAWLRRCLEEKPAGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG
                     RQEPCGNCDICLDPPKQYDGLNDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDF
                     GHDKLKVYGMGREKSHEHWVSVIRQLIHLGLVMQNIAQHSALQLTDAARPVLRGDVPL
                     KLAVPRIVALKPRVMQKSFGGNYDRKLFAKLRKLRKAIADEENIPPYVVFNDATLIEM
                     AEQMPVSASEMLSVNGVGMRKLERFGKEFMALIRAHVDGDDEE"
     gene            complement(23460..24329)
                     /gene="pldA"
                     /locus_tag="OQP62_001287"
     CDS             complement(23460..24329)
                     /gene="pldA"
                     /locus_tag="OQP62_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HCS1720883.1"
                     /translation="MRAILRGLLPATLLPLAAYAQEATIKEVHDAPAVRGSIIANMLQ
                     EHDNPFTLYPYDTNYLIYTNTSDLNKEAISTYNWSENARKDEVKFQLSLAFPLWRGIL
                     GPNSVLGASYTQKSWWQLSNSKESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGY
                     NHDSNGRSDPTSRSWNRLYTRLMAENGNWLVEVKPWYVIGSTDDNPDITKYMGYYQLK
                     IGYHLGEAVLSAKGQYNWNTGYGGAEVGLSYPVTKHVRLYTQVYSGYGESLIDYNFNQ
                     TRVGVGVMLNDIF"
     gene            24494..24961
                     /locus_tag="OQP62_001288"
     CDS             24494..24961
                     /locus_tag="OQP62_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312777.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HCS1720884.1"
                     /translation="MSAVLTAEQALKLVGEMFVYHMPFNRALGLELERYEKAFAQLAF
                     NNQPMMVGNWAQSILHGGVIASALDVAAGLVCVGSTLTRHETISEDELRQRLSRMGTI
                     DLRVDYLRPGRGNRFTATSSLLRAGNKVAVARVELHNEDQLYIASATATYMVG"
     gene            25005..>25844
                     /gene="rarD"
                     /locus_tag="OQP62_001289"
     CDS             25005..>25844
                     /gene="rarD"
                     /locus_tag="OQP62_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HCS1720885.1"
                     /translation="MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVI
                     WSFFFMVALLSVSRQWRQVKRLLKTPKKIFLLALSAVLVGGNWLLFIWAVNNHHMLEA
                     SLGYFINPLVNILLGMIFLGERFRRMQWLAVILAVCGVLVQLWTFGSLPIIALGLAFS
                     FAFYGLVRKKIAVEAQTGMLVETLWLLPVAAIYLFSIADSATSHMGQNALSLNLLLMA
                     AGVVTTIPLLCFTGAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEVPGADKMVTFAFI
                     WVAL"
BASE COUNT         6164 a         7211 c         6533 g         5936 t
ORIGIN      
        1 aatatcataa ggttttatag ttgacgatta attaatattt aagaggactt ttaggtaggc
       61 taacgtaaaa agggacgcta ctgcgtccca taaaatagtt aaataaatgc gaacgcatcg
      121 ccaaacagac gatcttcccg cgcattacgc tcatgacaga acagatcgcg ggcgattttc
      181 gccatctcaa aacgtccggc aatataaata tcgtgccccg ccagcgtacc ataatcctgc
      241 aataccgccg taagtaccgt tcctgtacgt ccacgccagc cttcttccgg ctgctcgaca
      301 acaggttcaa tacgcaaatt aggatggtta acagagagtg cttccagctc agagagatca
      361 tagaggtgct tttcttcgcg accgccccag taaatggtaa catcgcgggc cgggttgcgc
      421 gctaacgccg tcaacaggat ggagcgtgca taagaaaagc ccgtaccgcc cgcgatcaga
      481 atcaacggac gctcttcatc gtcacgtagc caggcgtcgc catgcggaat atcgacgacg
      541 atttcccggt ctttcagaat tcgatccatg accgccatcg catacagatt gagctcggaa
      601 gcgccaatgt gtaattcaat aaaccctttc tcgtccggcg ttgaggccat cgaaaacggg
      661 cgtttgtcac gctcgtccat tacgaccatc aaatactgac cagcgcggaa tgaaaacgcc
      721 gcgtccggca ctaaacgaac ccgatatacg gtatcggtga tagcttctac cgaggtcact
      781 ttacagctta aggttgtcat gcgctccctc tgtcgggtgt cgggtcaata ccgacatttt
      841 tcaagccgag tcgccgcagc ctgaaatgtc gatgtccgct ttcagttatt taaagatagc
      901 cagctcatcc caaatcgcat caatacgcgc ggtaacttca ggatctttaa caataggacg
      961 accccactcg cgttgggttt cgcccggcca tttgtttgtg gcatccagcc ccatttttga
     1021 acccagcccg gagaccggcg aggcaaaatc caggtagtca atcggcgtat tttcaaccag
     1081 caccgtatcc cgcgcagggt ccatacgggt ggtaatcgcc cagatcacat cattccagtc
     1141 gcgtgcgtta acgtcatcat cgcaaacgat aacaaatttc gtatacataa actggcgcaa
     1201 aaacgaccag acacccatca tgacgcgttt cgcatgacca gcgtactgct ttttcatcgt
     1261 cactaccgcc aggcggtaag aacacccttc cggcggcaga taaaagtcga cgatttccgg
     1321 aaactgtttt tgcagaatag gcacgaagac ttcattgagc gccaccccta ataccgcagg
     1381 ctcatcgggc ggacgcccgg tataggtgga gtgatagatg gcatcctcac gctgcgtaat
     1441 atgcgtgacg gtaaagaccg gaaagttatc cacttcatta taatagcccg tatgatcgcc
     1501 atacggtcct tccggcgcca tctctcccgg ctcaatgtaa ccttcaagga taatctcggc
     1561 gctggcaggc acttccagat cgttagaaag gcatttaacc acttcagttt tcgtgccgcg
     1621 cagcaggccc gcaaaggcat actccgacag agtatcggga acaggagtca cggcgccaag
     1681 tatcgtcgcc ggatcggcgc ccaatgcgac ggagaccggg aaacgttcac ccggacgcgc
     1741 ggctaaccac tcctgaaaat ccaacgcgcc gccgcggtga gacagccagc gcataatcag
     1801 cttattttta cctatcaact gctgacgata aatgcccagg ttttgccgtt ctttgtgcgg
     1861 gccacgcgtt accgtcagtc cccaggtaat cagcggcgcg gcgtcgtccg gccaacaggt
     1921 catgacagga agacgcgtta aatcgacatc atcgccagac gcgattttct gctggcaagg
     1981 cgcgccgcgt aaccgtttcg tcggcatatt cagcacttgc ttaaactgcg gcagcttgtc
     2041 aaacagatcg cgaaagcctt tcggcggctc aggttctttc agaaacgcta ataatttacc
     2101 cacttcccgt aaggcggaaa catcatcctg ccccatgccc atcgccacgc gttttggcgt
     2161 gccaaaaagg ttgcacagca ccggcatggc gtaaccttta ggattttcaa acagcaacgc
     2221 cggtccaccg gcacgcagcg tgcggtcagc gatttccgtg atttccagat gaggatccac
     2281 aggtagcgtg atgcgtttta gttccccctg ctgctcaagt agcgtcagga agtcgcgtaa
     2341 atcgtgatat ttcatggcgt ccattgtagc ctcttggtaa gcgcatcatt atacggcgtt
     2401 catcatcggg atgctgtatt tttgttaaat tagcgtgaac tctggcaacc aacgctaatc
     2461 cagatacggc ttaaaggatg aagtgtataa ttaacttcgc gcatggcttt tgctatgctt
     2521 gcgccccgaa caagcggata agagtcatta tgcaatcctg gtatttactg tactgcaaac
     2581 gcgggcaact tcagcgtgct caggaacacc tcgaaagaca agcggtaagt tgcctgacac
     2641 cgatgatcac cctggaaaaa atggtacgcg gaaaacgtac cttcgtcagc gaaccgctct
     2701 ttcctaatta tctgttcgtt gaatttgatc cggaagtgat acataccact acaatcaacg
     2761 ccacgcgcgg cgtcagccat tttgtgcgct ttggcgcgca tcctgcgatc gtgccttcca
     2821 gcgttattca tcagctttct atctacaagc ccgaaggcgt tgtcgatcct gaaaccccct
     2881 atcccggcga tagcgtcatc atcacggaag gcgcatttga agggctgaaa gcgattttta
     2941 ccgaaccgga tggcgaaacg cgttcgatgt tactgcttaa tttactcaat aaagaagtga
     3001 agcagagcgt aaaaaacacc ggttttcgca agatttagcg atcgttcaga atacgacctc
     3061 aaataaggtt ctggcattgg catctgtcat cgccgctaac cattgcggat cttcaccacg
     3121 ccatagcgct atgcgctcca ggatgtgagg cagatatgcg ggctcgttgc gtcgtgacgt
     3181 tggtttcggc gtaagatcgc ggggcaacag atacggcgcg tcggtttcta tcagtagctt
     3241 ttccgctgga ataaacggta agagttcacg tagctcaagc ccgcgtcgtt cgtcgcaaac
     3301 ccacccggta ataccgatat agagccctct gtccacacag gcctgcattt gctggcgtga
     3361 accggtaaag cagtgcagta ttgcaccagg aagactatcc agccagggat caagcaatgc
     3421 cagaaatcgc tcatgcgcgt cccggcagtg cataaagatt ggcatctgca attcggcggc
     3481 aatttgtagc tgcgcctgaa aggcacgctc ctgctcctgc ggcgtggaaa aattgcgatt
     3541 gaaatccagc ccgcactcac cgatagcgac gacttccggc tggttcgcca gcgcaataat
     3601 ggcgtcttca gacgcagatg accactgact gctgtcatgg ggatggacgc cagccgtcga
     3661 ccaacaatgg gggtagcgcc gcgccagttt taacgcctgc tgactttcat ggatgttcgt
     3721 tccggtcagt agcatacctt ttactcctgc cgcaaacgca cgggcgacca catcatcacg
     3781 atcttttgca aactggctac tggttaaatt aacgccaata tcaaacatgc ttgcccccat
     3841 atgacaaccg ccctggcggg cggttgtgtt tagtcttcag tgtgctcggc cttttcggtc
     3901 tcggcctcgt tatcttcgtc gcgcgtccgt cgcttaccga cataaaagcg tgagcagaaa
     3961 acgccaattt caaacaggca gtacatcggt atcgccagca acgtttgcga gaagacatct
     4021 ggcggcgtaa gcagcatccc cacaatgaat gccccgacca ggatataagg ccgtttttta
     4081 cgcaaatctt ctggcgtggt gatgcccatc cagcacagca acacaatcgc caccggcacc
     4141 tcaaaggcta cgccaaaggc cataaaaagc gccatgacaa agctcagata gctggcgata
     4201 tctgtcgaaa cctgtacccc ttccggcgcc gtatgcgtca ggaaaccaaa ggccaaaggg
     4261 aatacgacaa aataggcgaa ggccatacca atgtaaaaaa gcagcgaact ggataccagc
     4321 agcggtacga ccagacgacg ctcgtgttta tacagcgccg gggcgataaa ggcccaaacc
     4381 tggtacaaaa tgacaggcgc ggataagatc aaagacacca tgaaggtgag tttgataggc
     4441 gtaaaaaacg gcgacgccac atccgtcgca atcattgtcg ccccttgcgg catctgtttt
     4501 atcagcggtg cggcgactaa atgataaata tcattggcga aataaattaa cgccagaaaa
     4561 atcagaagta ctgcgacgat gcagtttagc aggcgcttac gcaactcgat cagatgcgtg
     4621 ataagcggtt gagtatcttc tacagccatg tttacggttt atcactcgac gagggggaag
     4681 attcgacaac aggcgcagcg gatttcttct cggcgtctat cgcggctacg gaagcggttt
     4741 ccgtcgactc aggcacgtta gctttaacgg gctccggctt ttgttccggc gcgctcgcct
     4801 gtgtttcagc ggcggcaggg gtgacgccct catgctgcgt ttcgttccct tttaccaccg
     4861 gattatggat ggtatgcgct tcatcgctcg cttgttcggg atcgttagcg ctgtaggtgc
     4921 gtttcatcga ctccgccgcc tgacgcagtt catccataga tgctttcagt tcgggagtca
     4981 gattttccag gctcgccttt tcgacttttt tcagactgtc ctggaactcc tgaagtttca
     5041 gttcctgagt cagttcattc tgaaccgttg tcgcaaggga gcgcaacgcg cgaatccagc
     5101 ccgctaccgt ttttaccgct actggcaatc gttgcggccc caacacaatg aggccgataa
     5161 cgaacactaa cagcagttcg ctaaaaccga tatcaaacac ggattatacc tgctctttat
     5221 cttggctttt agcgtcttcc tttttcgctt cgccttgctt atccgcgata gatttagcgg
     5281 taaaatcagc gtcctgactg gttttatcct gtttggcatc atcatcgctc atggcctttt
     5341 taaagccttt gatagacgcg ccaagatcgg aaccgatgga accgagtttt ttggtgccga
     5401 acagcagtac gacgataacg gcaacaatca acaactgcca aatactgata ccacccatac
     5461 atgttcctct gtgatagatg atgaattatt agggccgcat tatacacatt atccttcgcg
     5521 ctgcctcttt gttagccgct ttcgcccgtc ctattcacat acttttacat acgaccggga
     5581 cgacattgac ttgcggcctg agtattgcct cgagtgataa tatgtacctg cgtgacacaa
     5641 ccggcgttga gcgataaaaa atctcaacga gttttacgcc agccaaccag ccagaccact
     5701 acgccgccga ccatgagcca gccaggcatc aatccccatt cagggcggtt gacgagtaag
     5761 aatgacccgc tcagtaacag cgttgcgcca attcccaata aataacgaga ctgactttgg
     5821 cgcacatggt ttacctgtaa ctcgcgcgca atcttatcaa cactgtgctg taaatatttg
     5881 ccctggcgca aactgtcgta caccagttca ggtatttctg gcattttttc gacccagaac
     5941 ggcgcttttt ctttaagagc ccgcgtgaga gccggaatac ccacctgatc tttgatccag
     6001 gactcaagaa acggcttcgc cgttttccac aaatcaagct gaggataaag ttgccgccca
     6061 accccttcaa catacaataa tgttttctgc aacaacacca gttgcggctg gacttccatg
     6121 ttaaatcgac gcgctgtatt gaaaaggttt aacaacacat gaccaaacga gatttccgcg
     6181 agcggctttt caaaaatagg ttcacagacg gtgcggatgg caaactcaaa atcttcaacg
     6241 ttggtatctg gcggaaccca acctgaatcg acatgcagct ccgccacctt tcggtaatcg
     6301 cgattaaaaa acgcgataaa gttttcagcc agataacgct tatcttcttt gtttagcgac
     6361 ccgacgatac cgcagtcaat gccgatatat tgcggatttt cagggtgttc atgactgaca
     6421 aaaatatttc ccggatgcat gtccgcatgg aaaaagctgt cgcggaaaac ctgggtgaag
     6481 aaaactttaa ctccgcgttc cgccagcagt ttcatgttgg tgccgttctt ttccagcgcc
     6541 gccacatccg aaaccggaat gccatatatc cgctccatca ccatcatgtt ctggctacag
     6601 taatcggagt acacctccgg gatatacagc atgggactat tttcaaaatt gcgacgtaac
     6661 tgaatcgcgt tggccgattc ccgcagcaga ttcagctcat cgatcagcgt tttctcatac
     6721 tcacgcacca cttccgtcgg gcgcagacga cgcccatccg gcaacaggcg tggtacccag
     6781 cgagcaaggc gataaatcag tttcaggtct gcctgaatta ccggcaaaat atccgggcga
     6841 atgaccttaa taaccacttc tttaccgttt gatttcaatc gcgcggtatg tacctgggcg
     6901 attgacgccg acgctaaagg ctggatatca aagtcgtcaa accaggcttc gacaggtagc
     6961 ccccccatcg cctcttcaat ctgggctttc gccagccgac catcgaatgg cgcgacttta
     7021 tcctggagca aagcgagctg atcggcgatt tgcggcggga acaggtcacg gcgcgtggag
     7081 agcatctgac caaatttgat ccagaccggt cccagctctt gcaacgccag tcttaatcgt
     7141 tcacccagca atttatcttt atgccggttt ggcatccaga acagcgaata gcgccataat
     7201 cggagtggca gtgtaagacg cattcggggg atgagttcat caaggccgta gcttagaaac
     7261 gtgcggatga tgaaatatag gcgccgtact tcacctggcg tcatttggcc cccagttttt
     7321 ccagccgtgt ggtcagagaa tctacggcgc gctcaacagc cgcggtttct tcggcaaacc
     7381 atgcgacttc cagcgggcca ggcgccatac gccactcttc agtgatcgct tcagcggcat
     7441 aacgctgctg gcgttgaaac ccgtggcgca ggaatttagc cccgccacgc acgaccttac
     7501 cgatactttc cgccgcaata tcacccgtgt atggcgccaa cagctccgca ggatcgaatt
     7561 cggcgagatc ggcgagcgcc acaaaatttt gcacgacctg aatatcgccc tgcacttcca
     7621 gttcgccgct gcgaataagc gcggccaact gctgacgatc gcgtagtttt ggcaaaacgc
     7681 tagcttgagt gattaccgta cagtccgctt cgccttccca tgcccccagc acatcaacct
     7741 ggcgttcact gaataccagg actaatggcg tcgaaaatcc ctttagtttc acacacagta
     7801 cttttccctg taagcgcgtt ctggctgatt tcagcgctgg cgaacgatac agaaacgtat
     7861 tgaggagacc ttcaattcct gcggtcacta agggtttaaa aggcattcca ccctcctaga
     7921 atttataacc acggtgcaat gccacaacgc ccgccgtcag attgtaataa tccacgctct
     7981 caaatccggc gtcctgcatc atggctttta aggtatcctg atcgggatgc atacggatgg
     8041 attccgcgag ataccgatag ctatccgcat cgttcgcgac catcgagcca atacgcggta
     8101 aaatatggaa agaataggcg tcatacgctt tactcagcgg ctcaatgata ggcttggaaa
     8161 attcaagcac cagtaaacgt ccgccgggtt tcaacacacg gaacattgac cgcagcgctt
     8221 tttctttttc cgttacattg cgcaaaccaa acgaaatggt aatgcaatca aacgtattat
     8281 cagggaaagg cagagcttcg gcattcgcct gcacatactc tacgttgccg atcacgccga
     8341 tattacgcag cttctcacgc cccattttga gcatagaatc attaatatcc gccaggataa
     8401 ctttgccagt ttccccgacc atacgtgaaa atttcgcggt aagatcgccc gtcccgcccg
     8461 ctaaatcgag aacggtttgt ccacgacgca cgccactgca atcaatggtg aagcgcttcc
     8521 acaaacgatg aatgccaaat gacattaaat cattcatcac atcgtacttt gacgccacag
     8581 aatgaaaaac gtgggccacc atgtcagctt tctgctcttt agcgacggtc tgaaagccaa
     8641 agtgcgtcgt ttcttgtgaa tcttccacca tctcagtgcc tgcttatcga taaaaatgtt
     8701 caagaagtgt aacagattgg gccaatttgc cctactctgc gccaggacta aactactccg
     8761 tatgggttaa cttaactgct gcttcacccg ttcatcattg ggataatgtt catcctgccg
     8821 cccttcaggg atcgatcgta aacgatattc ttcatcttgc gtaacggcct gttccgctaa
     8881 atccggatta atctcgcgtt tgatttccac gcctagcccc cggaaggcct ccgcctgcgc
     8941 caaaacgttg ccacgccccg acgcaagttt tttcatcgcc tggcggtagt tatcctgcgc
     9001 tttatccaga ctctgaccga tcgctgacat atcatcaacg aacaaccgca ttttatcgta
     9061 gagcttactg gctctgtctg cgatgtgctg cgcattgcgg ctctggtgtt catagcgcca
     9121 caggttggcg attgtccgta acgccaccag cagcgtcgtg gggcttacca gcataatgtt
     9181 atttttcagc gcctcggtta tcagttcggg ctgtttatct aacgccagca ggaaagcggg
     9241 ttctacgggg ataaacatca gaacatagtc cagcgagcgg aggccgggaa gctgctggta
     9301 gtctttacgc cccagtaagc gaatatgatt gcgcaccgag gcgatgtgct cttgtaaagc
     9361 ggcctcgcgc gtatagtcat cttcagcgtt aaagtaacgc tcgtaggcga ctaacgtcat
     9421 tttagcgtcg atgaccacat ctttgccctg cggcaagcgg acgatgacat ccggctgcat
     9481 ccgcgagcgc gcatcgttct caatactgac ctgggtttcg tattcgtagc cttcacgcag
     9541 tccggatgcc tccagcaccc gcgccagcac aacttcgccc cagtttcctt gtgccttatt
     9601 gtcccctttc agggcgcgcg tcaggttgat cgcttcctgc gccatttgcg cgttaagctg
     9661 ctgcaaatta cgaatttcgt gcgccagcgt atgccgctcc tgcgcttctt tgccaaaact
     9721 ctcctgaacc tggcggcgaa aaccgtccag ttgctcacgc agcggcgtca gcaggctatt
     9781 caggctttgt cggttttgtt cgtctacgcg acgattactg tgttcaaaga tacggttcgc
     9841 cagattttca aactgctcgc ttaaacgctg ttcgctgttg atcatctgac ggattttgtc
     9901 ttccgcgtgt tgttgagtcg cttccagacg agtcgtgact tcacgcagat cggcttccag
     9961 agaggtatta atactgtgca ggctacgcag ttcgttatta agtaactcgc attcactgcg
    10021 ccagtgcgct tcttgcgcta attgctgccg ggccgcgcta agttcaatat ccagctcacg
    10081 ccgttcttcg ataagatcgg cgcggatttg atcggcgtgc gctttcgtcg ccagccagcc
    10141 aatcaccgcc ccagccgcca gcgccacgac ggcgcttatc ataagagtaa tatccacaac
    10201 acctctcctg gaaccacact gtcctgcaca aaatagaatt gtgctgtata aacgtccagt
    10261 ttaaaaggga tttcctgcga ggcgccacgc aaaaagaaaa ggccgaacgc gtcggccttt
    10321 gcaaaagaga ggagaattac agcagacgac gggccgcttc cacgacaatt ttcaccgcgt
    10381 ggctttcagt ttgtttcatc gtttccgcat tcggaatctc ttgttgggta cggttaacga
    10441 taacgcccgc caccatacct gcgcgtaaac cctggcttgc gcacatggtt aacagcgtag
    10501 cggattccat ttcgtagttc atcacgccca ttgcctgcca ctcttccata gagcctttga
    10561 agcgacgaac aacgcggcca gaataggtgt cgtaacgttc ctgacccgga tagaaagtgt
    10621 cggaagaggc ggttacgcca acgtgagtcg tggcgccaat cgatttcgcg gcttcaacca
    10681 gcgcggtggt gcaggcaaag tcggcaaccg ccgggaattc catcggcgca aaatgcaggc
    10741 ttgccccatc cagacgtacg gatgcggtcg ttaccagaac gtcgccgacg ttgatgtgcg
    10801 gctgaatagc ccccgtggtg ccgatacgca agaaggtacg aatacccagt tgcgccagtt
    10861 cttccacggc aatagaggta gacgggccgc cgataccggt agagcaaacg ataactgctt
    10921 taccatccag ctcagcgcgc caggaggtga attcgcggtg agatgccagc ttaaccggct
    10981 tatccatcag cgcggcgatc ttttccacac gctcaggatc gccagggacg atggcgagct
    11041 gggccccttg taaatcgttt ttggtgaggc cgagatgaaa aacatcagac ttggacatat
    11101 aaaactcctc tgtgaatcgg gtttgtcaga agaagcaaaa agacacttta cctaaggcat
    11161 aaagatattt tcgtgacagc catcactatg gcgtaaaaca attgcactcg tttaccatta
    11221 aaaagtgatg tgcatcacaa taaataatca atatcgccaa gcattgcaca aaagatagcc
    11281 gctttaaggc aatgtggttt gttacacact gtctatagtt aagattgcgc tattttttaa
    11341 gggtacggag aataccatga caacgacaca tccatccggc tttgcacctg cagcttcccc
    11401 acttgcccct acgatgattc atacacctga tggggccatt agcgcgggga taacgtcgat
    11461 cccctctcag ggcgacgata tgccagccta ttacgccaga ccaaaggcaa gcgacggcgc
    11521 gctgcctgtg gtcattgtgg tacaggaaat ttttggcgta catgaacaca ttcgcgatat
    11581 ttgccgacga ctggcgctgg aaggctatct cgctatcgcg ccggagctct atttccgcga
    11641 aggcgacccc aatgatttcg ccgatatacc cacattattg agcgggctgg tggctaaagt
    11701 acccgattcg caagtccttg ccgacctgga tcacgtcgcc agttgggctt cgcgcaacgg
    11761 cggggatgcg catcggctga tgatcaccgg tttttgttgg ggaggccgga ttacctggct
    11821 atacgccgcg cacaacccac agttaaaagc agcggtagcg tggtacggca agctggtggg
    11881 cgacacgtca ctcaattcgc cgaagcatcc cgttgatatc gccaccgatc ttaacgcgcc
    11941 ggtactgggt ttatacggcg ggcaggatac cagtattcca caggagagcg tggaaaccat
    12001 gcgtcaggcg ctacgcgccg ctaatgcgaa ggcggaaatc gtggtctatc ccgatgcagg
    12061 gcacgcgttt aatgccgatt atcgtccggg ctaccacgaa gcctcagcga aagacggctg
    12121 gcaaagaatg ttggaatggt tcgcgcagta cggtgggaaa aaaggctaac cacagcgcat
    12181 tacgatgttt gttgggccta cgagaccgga gtcggtgtag gctcaacaaa tcgtcatcgc
    12241 cacgttagct atgctttacc acagcatttt tatatttttt gccgctgccg cagggacaga
    12301 gatggttacg actgacggct cctgtgtctt tacgcgcgtc ctgcgccagc cagcgcatga
    12361 tcgatgccat cggatagcct tgcgccagca gctcccgcca gacattcata tacggcgtaa
    12421 cgtgctggaa aaaatgttta tagcccgtac acaagtaatt atgcgcagga tgaccggacg
    12481 gcgagacggc aaagcgatgc ttcggacagc cgccatgaca cgcaaagcgg tagtcacagc
    12541 gacgacaatc ggcggtcagg gtctcccgct tggcctcgcc aaacgcaata gcccgctcgc
    12601 tattatttaa ggttttgatg ctgtgctggt ggatattccc cagcagatgc tccgggtaga
    12661 caaagtggtc acagttgtag agatcgccgt tcgactccaa cgcgaaggca tgtccacaag
    12721 tctcggaatg tacacacagt accggctgct gcgccgtcca ggcggctaac gccacgtcaa
    12781 acatctgcac atagacgcgg tctacgtcgc gacgaaccca gatatcaaag atctggttga
    12841 gaaattcgcc atattgccac gacggtaccg tccatggcgc cagctttgcc gcgctttcgc
    12901 cgggcatcac cagattaagt accgatgagt tatcggtgct cattcgctct accagcggga
    12961 taaactgaat aaaacgcgat cccgccgcca gaagaaattc gtagacgtct gctgcatgac
    13021 cgacgttatg ttttcccacg acggttaagg tattaaagtc aacatggtgc gctttaagcc
    13081 gcgccatggc tgcgacgacc tgttcatgag ttccttttcc agcgcgatta agccgatagt
    13141 ggttgtgtaa cgacgccgga ccgtcgatag agagaccgat gagaaaatgc tgttcagcga
    13201 aaaagcgcgc ccactcgtca ttcaccagga tgccgttcgt ctgtaacgca tgagtgattt
    13261 ttcgcccatc gccgtacttt tcacacaatg cgacaacccg gcggaaaaat ggcagcccca
    13321 tcatggtcgg ttcgccgcac tgccaggcaa agtcaatgcg gtcgccactc tgcgcggcaa
    13381 tatgctggcg tataaactgt tccagcgtct cgtccgacat tcgccagttt ttattgcgtt
    13441 ccgggtacag cgcctctttt tcaagataga agcaatatgt gcaatcaata ttgcagatcg
    13501 cgccgccggg tttggccatt acgtgacaac ctgctaccgc catgtcagac atctccgtta
    13561 aaaaataagg ttcaccagcg ccatgagaca atgcgacgtt tatcgtcgcc agggaacata
    13621 acagaatgga aaacctcgtt ttgtgctatg agagcgctgg gcgatcatga caggaaaaac
    13681 gatctgcgag gcaataaaat ccgccgcgct gcttccgggg acgctatccg cctggttgtc
    13741 attcatacgg agaacctttt tattatcaag atcgccaaat agccagatcc tgaaaaagac
    13801 agcgcggaaa ataagaaaaa gggaaatgag aagaaagagg cgctgttaat caggtcagac
    13861 acgggcgcta cccgtcaaag ggtagcgccg cattgctgcc ggataaacgc agcggtcagg
    13921 atgggttatt tcgcctgacg cagattgtgc gccgctttga ccatgttcgc taacgccgcg
    13981 cgggtttccg gccaaccgcg agttttcaga ccgcagtccg gattcaccca caggcgttgt
    14041 gccggaatac gttgtgccgc cttcttcagc agggcttcaa tccactcgac gctcggcacg
    14101 ttcggcgagt gaatatcgta cacgcccggc ccgatttcgt tcgggtagtc gaacgcttcg
    14161 aacgactcca gcaactccat atccgagcgg gaggtctcaa tggtgatcac atccgcgtcc
    14221 agcgcggcga tcgaatccat aatgtcgttg aactcgcagt aacacatgtg ggtgtggatc
    14281 tgggtttcat ccttcgccac cgccgcgttg atgcggaagg cttccacacc ccattccaga
    14341 taggcgtccc agtcgctgcg acgcagcggt aaaccttcac gcagcgccgg ttcgtcaatc
    14401 tgaataatcc cgatccccgc cgcctccaga tccgcgactt catcacgcag cgccagcgca
    14461 atctgtttcg caatcgtttc gcgggtcacg tcttcgcggg ggaatgacca gcaaagaata
    14521 gtcaccgggc cggtcaacat cccttttacc ggcttgtcgg tcagcgactg ggcatatttc
    14581 gcccactcca cggtaatcgg tgccggacgg ctgatatcgc caatcactac cggcggtttc
    14641 acacagcggg agccatagct ttgcacccaa ccattctggg taaagacgaa gccgtccaga
    14701 tgctcgccga agtattccac catgtcgttt cgctcggctt cgccgtgtac cagcacatcc
    14761 agccctaaac gctcctgctc gatgatagcc tgtttgatat gttcggcgat gccggtgcgg
    14821 tagttgttcg cgtcgaggtt gccctttttg aagtccagac gcaggccgcg aatttccgtg
    14881 gtttgcggaa acgaaccgat agtcgtcgtc ggccaggcgg gaagtttaaa gcgggcgcgt
    14941 tgcgcttcag cgcgcacctc atacggattc tcacgctggc tgtcctgcgc ggtgatcgcc
    15001 gccaggcgtt tttctactgc ggcattatgt acgcgatggg agtgacgacg agcctgaatc
    15061 ggtacgctcc attcctcaag cgccgccgtt tcgccgctgt tcagcgcatc gcgcagcaac
    15121 gccagttcac cgcatttttg cagcgcaaag gcaaaccagc tttttacttc cgtatccaga
    15181 cgcgtttcga cgctgagatc gatcgggctg tgcagtaaag agcaggagga tgctacccac
    15241 agcgcgcgtt tgcccacaat ggcgttaatc tgcgcgtatt tttcggtcaa atcggcgcgc
    15301 cagacattac gcccgttaat caagcctgcg gagagcagcc agtcgaccgg cagacgttga
    15361 tgcagttcca ctacatcatc tttgccatga atgaggtcaa catgtagccc ctgtaccggt
    15421 agcacgataa tagtgtccag gtttggcgtc acgccttcaa aataggtcgt cagcaacagc
    15481 ttcacctggc cggcgagcgc gtcgtaagcc ggtttgaagg catccagcca cgcctgcggc
    15541 agttccagca ccagtgctgg ctcatcaatt tggacccact caacaccacg cttcgccagc
    15601 tcagccagca cgtgctgata caccggcaaa atgtctttca gcaacgtcag gcggtcaaac
    15661 ggctcgcctt tcactttacc cagccacaga tacgtgacag gccccagcag tacgggtttg
    15721 atcttatgcc ccagcgccag cgcttcgtcc acttcctcca gcaactgtgt ccaggtaagc
    15781 ctgaactgct ggcctttgct gaactccggt actatgtagt gatagttagt attaaaccat
    15841 ttggtcattt ccgctgccgc cgccggttcg ccggttggcg cgcgaccacg gccaatgcgg
    15901 aacagagtgt cgatgtccac ggaaccgtcg ttgttctgat gacgagccgg cacattgcct
    15961 aacagcaggc tggtggtcag aacatggtcg taccaggcaa agtcgcctac cggtaacagg
    16021 tcaatacccg cttgtttctg ctgctcccag tgacgcgcgc gcagttcgcg gcccaccgcc
    16081 agtaacgctt cacgcgttgt gttccccgcc cagtagctct cttgcgcttt tttcaactcg
    16141 cgacgcaggc caacgcgagg aaaaccgagg gtatgagtca atattgtcat tttacttcct
    16201 ctcttatttt attgaatctg aaagtaaaac tctaaatagt tcggcttgca ggaaggcggc
    16261 gacacagcgc atccccagga gcttactgaa gtaagtgact ggggtaagca aggaagccaa
    16321 cgcatctgca agtcgaaata tgacgagttt tagacgtctg gatgtttaca catccataat
    16381 gtaaaggtac tgtatattcc tcaagcgcaa tttgttcatg gcgaagtgaa ggactttcat
    16441 gatcgaaatt aaacatctga aaacactcca ggcattgcgg aatagtggat cgctggctgc
    16501 tgctgctgcg gtgctgcacc agactcaatc cgctctgtct catcagttca gcgatctgga
    16561 acaacgcctt ggcttccgcc tgttcgtgcg taaaagccag ccgctgcgct ttacgccgca
    16621 gggggaagtt ctgctgcaac tggcaaacca ggtgctgccg caaatcagcc gtgcgctgca
    16681 ggcgtgcaac gaaccgcagc aaactcgtct gcgcatcgct attgaatgtc atagctgtat
    16741 tcagtggctg accccggcgc tggaaaactt ccgtgcaagc tggccgcagg tagaaatgga
    16801 tttcacatcc ggcgtcactt ttgatccgca accggccttg caacaaggcg agctggattt
    16861 ggtgatgacg tcggatattt tgccgcgcag cgggctgcat tattcgccga tgtttgattt
    16921 tgaagtccga ctggtgctgg cgcccgacca tccgctggcc agcaaaacgc agattacgcc
    16981 ggaagattta gccagcgaaa cgctgttgat ttacccggtg cagcgcagcc ggctggatgt
    17041 ctggcgacat ttcctgcaac cggcgggtat cagtccgctg ctgaaaagcg tggataatac
    17101 gctactgctg attcagatgg tggcggccag aatgggtatt gccgccctgc cgcactgggt
    17161 ggtggaaagc gttgagcgcc agggtctggt ggtgaccaaa accctgggcg atggtctgtg
    17221 gagccgcctg tatgccgccg tgcgcgacgg cgaccagcgt caggcggtga ccgaggcgtt
    17281 tattcgctcg acgcgggatc acgcctgcga tcatctgccg tttgtgcgga gcgcggagcg
    17341 acccattttc gatgcaccca cagcgaagcc aggatcacag ccgcgcctgt aataaagctt
    17401 ggccagtggg gctgctgatg ccagatggca agattaacca gcagtcctgc gggaacatgc
    17461 atattattca tgatacccag cgtcccggcg tctacctggg tagcgccata gttccacata
    17521 aagtagccaa tgccggacgc caccacgccg agaaacacca gaatgctcca ttgcagcgtg
    17581 gtttccggca gcttttgcgc gttccccaac agcgaccacg ccaccgccgc caccaaaaac
    17641 gcccccagat agaaccacgc aaaggcgttg tgctgcggca tgggacgggt ctccatcaga
    17701 cgtttatacc ccaccattcc gatagcgaaa ctgatattag aaagctgcac caggagcaaa
    17761 ccgacccaaa aatggtcggt cacgcgatcg tagcgaataa tcccggcgcc aatcaccgcc
    17821 agcaacgcgc taaatgcata gccccagcgc aaacgacgct gactcatcac atcgtaaatc
    17881 agcgtgatat agagcggcgt caaaacggta aacagcagca gttcggatac ggtcaggtag
    17941 aggtaagcat ggaagctcaa catatacatg atgccaagct gcatcgcccc caccagcata
    18001 tacaggctga tggtttttag gttgtgcccg cgagtacgca aaaacggcag aaaaacgagc
    18061 gccgccagcc caacgcgtat cagcaccgcg aaatagctat cgacatgccc ggcaagatac
    18121 tcgccaaata gactaaagga gaaagcccac aggatagtgg tgatgatgag tagcgccaca
    18181 atggatgtct cttaaaacag ggaacaccca ttgtagcgga gagtgaggtt gacaactggt
    18241 caactaacaa acaatcacat cagcgtaaga aaagatcgcg caggtaatgc ggcacggcgt
    18301 tatccgcgtt gatgccgatc acctcaagtt cgggatacag gtctttcaga cgctggtgcg
    18361 cattgcccat gatgcagcct ttgcccgcca tcgtgagcat ttcagcgtcg ttcattccgt
    18421 cgccaaaggc gatacactct ttcaggctgt accccatcgc ctgagcgacc gcttccagcg
    18481 catgaccttt cgacactccg cccgccatca cttccagaca ggttagcgta gagaagctca
    18541 cgtttacccg atcgccccag cgcgcgttaa tcgcctgctc cagcggcaac aacttttcat
    18601 gagtgtcgct ggtgaaaaac actttgctga cgccctccgg ctccagcagc gcaggctcaa
    18661 acagcgaata gttaaatacc gcctctttga aaaaacgcat ttcatcgggg cgatgacgat
    18721 tcataaacca ttcgtcgtcg cgataaacgt tagtcacgat gtccgggttc gcattcacca
    18781 cgccgaacag gtcgctggca atgtcgctgt ccagattatg cgtaaaaacc aaattcccgt
    18841 cggtatcgtg cactcgcgcg ccgttggagg tgatcatgta agacttgatt tcaagattat
    18901 cgcggatttg ccctacatcg acatgatgac gaccagtggc aaagacaaaa tggatgccgc
    18961 gtgcggtcaa cagcttcaga gtctctttgg cataagggga caacgtatgg tcgggggaga
    19021 gcagcgtgcc atctaaatca gacgcaacaa cctgatacat aataaaattt aacctctaag
    19081 caaagcgatt tccgctggat aaattaggct tgttgaaaaa ttcaacaatg gcgttaagcg
    19141 cgactgagcg catggcgtcc ttttcaaaaa ggatctcatg gtacgcgcct ttgataacca
    19201 gcggttttcc cccttcacaa gggtatcccg ccgcggcgcg aatttcacaa aaacgatcgt
    19261 gggtgcggtt atccactacc cgctcttctt ccgcctgaat cagtagcgta ggcgtcgtgt
    19321 catcgctcgc cccagccagt acctgctcac ccgccagaat gccttcgcgt acccaatgcc
    19381 aggtggggcc gccaacgcgc agctgcggct cgtcggcata aaatcgtaag ttgcgctgat
    19441 aacgctggcg gctgtgggtc agcgcattca tcccaaacgg caacgcccgc cactgaccgg
    19501 taccaatagc gtaatcttca cggatacgct gatgcccttc ggcccagtcg agaatatggc
    19561 gcaccataaa ggaaggcaag cgtatcacaa taccaaacat cggcgcggtg agcgcaatag
    19621 cgtcgcaccg cacacgatgg cgttgcagga acagggtggc tatcgcgccc cccattgagt
    19681 gcgccaggat ataacgctta cgccacgacc ccggctcaat ttcctgctgc cagaacgccg
    19741 ctaagtcctc aacataatcg ttaaaatgat cgacatgacc ccgatgcggg tccgataaca
    19801 tccgcccgga gcgcccttga ccacggtggt cgatgatgaa gatatcaaaa ccgagatgaa
    19861 aaaggtcata cgccagttca gcgtatttta cataactctc aatgcggcca ggacaaatga
    19921 cgatcgtccg atcgttggag tcattccgaa aacggacaaa gcgcaccgga atgttatcca
    19981 cgccgataaa ctccgcctct tcccgctgac gccaaaaatc ggtcagcggc cccatagcaa
    20041 aagcggcaaa cgcattttct cttgtttccc agtcattttg ctgctgaaac atcgggtttt
    20101 cggcctcgtt taccaggtaa aatcgttttt tgcgtcgtgc ctgacacaac acagcggcag
    20161 tagcgtattg tggcacaaaa acagacaacc aaggagtttc gcatgacctt tgaatggtgg
    20221 ttcgcctatc tactgacctc aactctgttg agtctttctc cgggttcagg cgccatcaat
    20281 accatgacga cgtctatcaa ccatggatat cgtggcgcag cggcttctat cgccgggctc
    20341 cagaccgggc tggggataca tatcgtactg gtgggcgtcg gactgggtac gctcttttcg
    20401 cgctcgctca tcgcttttga aattctgaaa tgggctggcg cggcttatct tatctggctg
    20461 ggtatccagc aatggcgcgc cgcaggcgct atcgatctgc atactctcgc ccagacgcaa
    20521 tcgcggggtc ggctgttcaa acgggcgata tttgtcaatc taaccaatcc caaaagtatt
    20581 gtctttcttg ccgccctgtt tccgcaattc atcatgccgc agcaaccgca actggcgcag
    20641 tacctcattc tcggcgtcac cacgattgtg gtggatatga ttgtgatgac cggttacgcc
    20701 acgctggcgc agcgcattgc cgcctggatt aaaggaccaa agcagatgaa ggcgctgaat
    20761 aaagcgtttg gttcgttgtt tatgctggta ggcgcgctcc tggcgtcggc aagacacgcg
    20821 tgatagtcgt gccggatgat gtttatccgg cccggaggta aattaacgcg aaataatcag
    20881 gtgaatacca aagcccgcaa acagagcgcc ggcaaagcca tcaatccatt tcgccagacg
    20941 ctgatagcca cggcgcattt tcggcagcgc gaacaggctg gcgactacgg taaaccaggc
    21001 cagcgtttcc agggtaatta acgcgaaaat accccagcgc gccgcagcgc cgacgttatc
    21061 gccgacaaac agtgaaaaaa cggaaccaaa atagataatc gctttcggat tcgacagatt
    21121 ggtcagcagc cctttgagaa aactgcgccc gctctgcgcc agttcaatgt gcggagaaga
    21181 cgccgccgca tcctgttttt tcagcgcgcc gcgcagcatc tgatagccca tccagcacag
    21241 gtacaggccg ccgcctacca taatgatcgt atgcagccag gccatttttt cgatgatgag
    21301 atgcaggcca agcagcgcca cgcccgccca taccatcacg ccgcaggtga tgcccagtac
    21361 gcccatcatc gcttctttac gcgaacggct gacggcagtt tgagacacga agaaaaaatc
    21421 ggggccaggg ctcattagcg caacgatgtg caccattgcc acggtgaaaa atagcatcaa
    21481 cataaaaatg gctcgcgggg aaatagttca gtgagtcacc atcctggcac ttttttgccg
    21541 ggctgactac tcttcgtcat caccatcgac atgcgcgcgg atgagcgcca tgaattcttt
    21601 cccgaagcgc tccagtttgc gcatcccaac cccgttaacg cttaacatct cgctggcgga
    21661 aaccggcatc tgttccgcca tttctatcaa cgtggcgtcg ttaaagacca catacggcgg
    21721 gatattctct tcatcagcga tagctttacg cagcttgcgc aacttagcga acaatttgcg
    21781 atcgtaatta ccgccgaacg atttctgcat cacgcggggt ttgagggcga caatgcgcgg
    21841 caccgcaagc tttagcggaa cgtctccacg gagtaccgga cgcgcggcat ccgtcaactg
    21901 taatgcggag tgctgcgcaa tattttgcat taccagcccc agatgaatga gctggcgaat
    21961 cacgctcacc cagtgctcat ggctcttttc gcgtcccatg ccataaacct tgagtttgtc
    22021 atgaccgaaa tcgcggatgc gttggttatt cgcgccgcgg atcacctcga caacgtagcc
    22081 catgccaaaa cgctggttaa cccgaccaat ggtagaaagc gcaatctggg catcgtttaa
    22141 gccatcatat tgtttgggcg gatcgagaca gatatcgcag ttgccgcacg gttcttgtcg
    22201 gccttcgcca aagtaattaa gcaataccag gcggcggcag gtttgcgctt cggcaaaagc
    22261 gcccatcgca ttcagcttat gccgttcaat atcctgaagc tgtccggctg gtttctcttc
    22321 cagacaacga cgtagccagg ccatatcagc cggatcgtaa aatagcatgg cttccgcagg
    22381 cagtccgtcg cgcccggcgc ggcccgtttc ctgatagtag gattcaatat tacgcgggat
    22441 atcgaaatgc acgacgaaac gtacgttagg tttgtttatg cccattccaa aagcgacggt
    22501 cgccaccacg atttgcagat cgtcgcgctg aaatttttcc tgcacatcgg cgcgaatagc
    22561 gttttccagc cccgcatgat aggccgccgc gctaatgccg cgactttgca agcgcgcggc
    22621 ggtatcttcc actttcgccc gactgttgca gtagatgata cccgatttgc cgcgttgctc
    22681 ctgaacatag cgcattagct ggtcgagcgg cttaaacttc tccatcagca tgtagcggat
    22741 attcggtcgg tcaaagctac tgatctggat taacggatcg ttaagcccaa gcagacgaat
    22801 aatatcctgg cgcgtggtgt cgtcggcggt ggcggtcaat gccataaacg gcaaagcggg
    22861 aaaacgctgg cgaagctgac cgagagccgc atattccgga cggaaatcat gtccccattg
    22921 cgagatacag tgcgcttcat ccaccgccag caataccgga ttccagtgcg ccagatgatc
    22981 aagaaagttg tccagcatca ggcgttccgg cgcaatatac agcagacgaa tctgtccggt
    23041 acggcacccc gccatcacct caagctgctg ctcgcggctt tgagtggagt tcagacaggc
    23101 cgccgccacc ccgttcgcca gtagctgatc gacctggtct ttcatcaacg agatcagggg
    23161 cgaaacgacg acggtcaatc cgtccagcaa caacgcgggg atttgatagc acagagattt
    23221 gccgccgccg gtgggcatga cgaccagaca gtcgcgaccg gagagcgcag tatcaataat
    23281 cgcttcctgg cccgggcgaa actgttggta gccaaaggtt tcctgcaaaa cctgtttggc
    23341 ccctgattcc agattcaaca cttccgcctg cgccacatta accccgttca ccataaatca
    23401 aaacaggcgc tattttcagc gcctgcgaga gaaactgcaa tgtttaaaac acaatccaat
    23461 cagaagatat cgttaagcat cacgccgacg ccgacacgtg tctgattaaa attatagtcg
    23521 atcagcgatt cgccatagcc gctatacacc tgggtataaa gccggacatg tttagtgacc
    23581 ggatagctta atccaacttc cgcgccgccg tagcctgtat tccagttgta ctggcctttg
    23641 gcgcttaata ccgcctcgcc caggtgataa ccgattttaa gctggtaata acccatatat
    23701 ttggtgatgt ccggattatc gtcggtactg ccaatcacgt accatggttt gacctctacc
    23761 agccagttac cgttttcggc catcagacgg gtatacagac ggttccagct acgcgaggtg
    23821 gggtccgaac gtccgttaga gtcatggttg tagcccatct ctacgtcgcg cagcgtccag
    23881 ccggcaaagc gataatcggt agcaaaacca agaaaaagct gcggttcgta gttggtttcg
    23941 cgaaacggcg aagactcttt actgttggaa agctgccacc aggatttctg cgtataggaa
    24001 gcgcccagta ccgagttcgg ccccagtatt ccgcgccaca gcggaaacgc caggctcaac
    24061 tgaaatttca cttcatcttt acgtgcgttt tcagaccagt tgtaggtact tatggcctct
    24121 ttgttcagat cgctggtgtt cgtgtagatc aagtagttcg tgtcataagg gtaaagcgta
    24181 aaagggttat catgctcctg tagcatgtta gcgatgatac ttccccgtac tgcaggcgca
    24241 tcatgaacct cttttatcgt agcttcttgt gcatatgccg ctaatggcag tagcgtggct
    24301 ggcaacaacc ctctcaaaat cgcccgcatt cttgacgttc tcctgacgaa gtattttcag
    24361 cttgaatcat tctctgccaa ccatttttac atatttacac acatagccgt tagttatccc
    24421 ttcttaaagt agaaaacaac aattaagaag cataatatca acatttcatt aaccaatgga
    24481 gtatcaggaa tctatgtccg ctgtacttac cgctgaacaa gctctgaaat tagtgggtga
    24541 aatgtttgtc taccacatgc cgtttaatcg ggcgttaggg ctggagctgg aacgctatga
    24601 aaaagcgttc gcccaactgg ccttcaacaa ccagccgatg atggtcggca actgggcgca
    24661 aagcatttta cacggcggcg tgatcgcctc tgcgctggat gtcgccgccg gactggtatg
    24721 cgtcggcagc acgctaactc gccacgaaac catcagcgaa gatgaactac gccagcgcct
    24781 gtcgcggatg ggaacgattg acctgcgcgt cgattacctg cgtccgggca gaggcaaccg
    24841 ctttacggcc accagtagcc tgctgcgcgc agggaataaa gtggccgtcg cccgcgtgga
    24901 attacacaat gaagatcagc tgtacatcgc cagcgccacc gctacttata tggtgggata
    24961 aaagcaggta aactgttgtt acacttcaga tacgagtttt ccggatggac gcaaaacaaa
    25021 cacggcaggg cgtattactc gctcttgccg cctattttat ttgggggatc gcccccgcat
    25081 atttcaagct gatctattac gttcccgcag atgagatcct gacgcaccgc gtgatttggt
    25141 catttttctt tatggtggcg ctgcttagcg tcagccggca gtggcgacag gttaagcgtt
    25201 tactgaaaac gccaaagaag attttcctgc tggccctgtc cgccgtactg gtcggcggta
    25261 actggctatt gttcatttgg gcggtaaata atcaccatat gctggaggcc agcctgggtt
    25321 atttcattaa tccgctggtt aacatcttgc tggggatgat ttttcttggc gaacgcttcc
    25381 gtcgaatgca gtggctggcg gtgattctgg cggtgtgcgg cgtgctggtg caactctgga
    25441 cctttggctc gctgccgatt atcgcgctgg ggctggcgtt tagttttgcg ttttacggcc
    25501 tggtgcgtaa gaagatcgcc gttgaagcgc agacgggtat gctggtcgaa acgctatggc
    25561 tgttgccggt cgccgcgatt tatctgttta gcatcgccga tagcgccacc agccatatgg
    25621 ggcaaaacgc actatcgttg aacttgctgt taatggcggc gggtgtggtc actacgattc
    25681 cgctgctgtg ctttaccgga gcggctacgc gtctgcgtct ttctacactg ggctttttcc
    25741 agtatatcgg cccaacgctg atgtttttac tggcggtgac gttttatggc gaagtgccgg
    25801 gcgcggataa gatggtgaca tttgcgttta tctgggtcgc gctg
//
LOCUS       DAJVSD010000037        25665 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.037, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000037 DAJVSD010000000
VERSION     DAJVSD010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 25665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25665
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.037"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..2538
                     /gene="sadA"
                     /locus_tag="OQP62_001290"
     CDS             <1..2538
                     /gene="sadA"
                     /locus_tag="OQP62_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric autotransporter adhesin SadA"
                     /protein_id="HCS1720886.1"
                     /translation="DALLWDADSGTFSASRNGSASKITNLAAGTLAADSTDAVNGSQL
                     YETNQKVDQNTSAIADINTSITNLSSDNLSWNETTNSFSASHGSSTTNKITNVAAGEL
                     SEESTDAVNGSQLFETNEKVDQNTTDIAANTTNITQNSTAIENLNTSVSDINTSITGL
                     TDNALLWDEDTGAFSANHGGSTSKITNVAAGALSEDSTDAVNGSQLYETNQKVDQNTS
                     AIADINTSITNLGTDALSWDDEEGAFSASHGTSGTNKITNVAAGEIASDSTDAINGSQ
                     LYETNMLISQYNESISQLAGDTSETYITENGTGVKYIRTNDNGLEGQDAYATGNGATA
                     VGYDAVASGAGCLALGQNSSSSIEGSIALGSGSTSNRAITTGIRETSATSDGVVIGYN
                     TTDRELLGALSLGTDGESYRQITNVADGSEAQDAVTVRQLQNAIGAVTTTPTKYYHAN
                     STEEDSLAVGTDSLAMGAKTIVNADAGIGIGLNTLVMADAINGIAIGSNARANHANSI
                     AMGNGSQTTRGAQTDYTAYNMDTPQNSVGEFSVGSEDGQRQITNVAAGSADTDAVNVG
                     QLKVTDAQVSRNTQSITNLNTQVSNLDTRVTNIENGIGDIVTTGSTKYFKTNTDGADA
                     NAQGADSVAIGSGSIAAAENSVALGTNSVADEANTVSVGSSTQQRRITNVAAGVNNTD
                     AVNVAQLKASEAGSVRYETNADGSVNYSVLNLGDGSGGTTRIGNVSAAVNDTDAVNYA
                     QLKRSVEEANTYTDQKMGEMNSKIKGIENKMSGGIASAMAMAGLPQAYAPGANMTSIA
                     GGTFNGESAVAIGVSMVSESGGWVYKLQGTSNSQGDYSAAIGAGFQW"
     gene            2837..4492
                     /gene="lldP"
                     /locus_tag="OQP62_001291"
     CDS             2837..4492
                     /gene="lldP"
                     /locus_tag="OQP62_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HCS1720887.1"
                     /translation="MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAAS
                     WTVVIALAVALLFYKMPVDHALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDI
                     IRSSILSITPDQRLQMLIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFNPLYAAGLC
                     LIVNTAPVAFGAMGIPILVAGQVTDLDSFEIGQMVGRQLPFLTIIVLFWIMAIMDGWR
                     GVKETWPAVMVAGGSFAIAQYLSSNFIGPELPDIISSLVSLVCLTLFLKRWQPVRIFR
                     FGDMGASQVDQTLARTRYTTGQIVRAWSPFLFLTATVTLWSIPPFKALFAPGGALYDW
                     VINVPVPYLDKLVARMPPVVHEATAYAAVYKFDWFSATGTAILFAALLSIVWLKMKPS
                     AAIQTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGSAFTFFSPFLG
                     WLGVFLTGSDTSSNALFASLQATAAQQIGVSDVLMVAANTTGGVTGKMISPQSIAIAC
                     AAVGLVGKESDLFRFTVKHSLIFTCMVGVITTLQAYVLTWMIP"
     gene            4489..5265
                     /gene="lldR"
                     /locus_tag="OQP62_001292"
     CDS             4489..5265
                     /gene="lldR"
                     /locus_tag="OQP62_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LldR"
                     /protein_id="HCS1720888.1"
                     /translation="MIVMPKRLSDEIASRVRALIEEQNLEAGMKLPAERQLALQLGVS
                     RNSLREALAKLVSEGVLVSRRGGGTFVRWQHETWSEQNIVQPLKMLMANDPDYSFDIL
                     EARHAIEASTAWHAAMRATAADKEKIRLCFDATLSEDPDLASQADVRFHLAIAEASHN
                     VVLLQTMRGFFDVLQSSVKQSRQRMYLVPPVFSKLTEQHQAVLDAILDGNAEGARKAM
                     MAHLSFVHTTIKRFDEDQARQARITRLPGDHNEMTRENKS"
     gene            5262..6452
                     /gene="lldD"
                     /locus_tag="OQP62_001293"
     CDS             5262..6452
                     /gene="lldD"
                     /locus_tag="OQP62_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent L-lactate dehydrogenase LldD"
                     /protein_id="HCS1720889.1"
                     /translation="MIISATSDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQ
                     VALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIP
                     FTLSTVSVCPIEEVAPTLKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPT
                     PGARYRDAHSGMSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLE
                     DYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHG
                     GRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLY
                     ALATAGKTGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLVQELGKSLPAALAPMSK
                     GDAA"
     gene            6517..6990
                     /gene="trmL"
                     /locus_tag="OQP62_001294"
     CDS             6517..6990
                     /gene="trmL"
                     /locus_tag="OQP62_001294"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000932331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HCS1720890.1"
                     /translation="MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRL
                     RRAGLDYHEFAAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPE
                     TRGLPASILDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQLGYPGAVLRS"
     gene            complement(7058..8062)
                     /locus_tag="OQP62_001295"
     CDS             complement(7058..8062)
                     /locus_tag="OQP62_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS1720891.1"
                     /translation="MKRTKSPRAPTLEDVARSAGLSPMTVSRALNSPQLVRPKTVEKV
                     MQAVRVTGYIPNALAGGLASRRSKLIAVVVPQINNNMFVDTIQSLSDELARRGYHILL
                     CVAGYTEQTEAELVATLLSRRPDGVVLTGIHHTIELKKVILNAAIPVVEIWDLTPTPL
                     DMLVGFSHEKVGQATGEYLLSKGYRRPGLLWTADRRAAQRKQGLCSVLQRHAIHAVPQ
                     VDVPLPASLSLGRSGLSQLFDEGTFDVIVCSSDTLAQGAMMEAESRGLRIPHDLAVIG
                     FGDLDFAASNRPSITTVSVDRRAIGQRAATLLADRIEQKPCAEAIVDIGFHLIERESA
                     "
     gene            8381..9577
                     /locus_tag="OQP62_001296"
     CDS             8381..9577
                     /locus_tag="OQP62_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-talarate/galactarate dehydratase"
                     /protein_id="HCS1720892.1"
                     /translation="MALSANSDAVTYAKAANTRTAAETGDRIEWVKLSLAFLPLATPV
                     SDAKVLTGRQKPLTEVAIIIAEIRSRDGFEGVGFSYSKRAGGQSIYAHAKEIADNLLG
                     EDPNDIDKIYTKLLWAGASVGRSGMAVQAISPIDIALWDMKAKRAGLPLAKLLGAHRD
                     SVQCYNTSGGFLHTPLDQVLKNVVISRENGIGGIKLKVGQPNCAEDIRRLTAVREALG
                     DEFPLMVDANQQWDRETAIRMGRKMEQFNLIWIEEPLDAYDIEGHAQLAAALDTPIAT
                     GEMLTSFREHEQLILGNASDFVQPDAPRVGGISPFLKIMDLAAKHGRKLAPHFAMEVH
                     LHLSAAYPLEPWLEHFEWLNPLFNEQLELRDGRMWISDRHGLGFTLSEQARRWTQLTC
                     EFGKRP"
     gene            9651..10961
                     /locus_tag="OQP62_001297"
                     /pseudo
     CDS             9651..10961
                     /locus_tag="OQP62_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462598.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(11044..11865)
                     /gene="cysE"
                     /locus_tag="OQP62_001298"
     CDS             complement(11044..11865)
                     /gene="cysE"
                     /locus_tag="OQP62_001298"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001112113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HCS1720893.1"
                     /translation="MPCEELEIVWKNIKAEARALADCEPMLASFYHATLLKHENLGSA
                     LSYMLANKLASPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPL
                     LYLKGFHALQAYRIGHWLWNKGRRALAIFLQNQVSVSFQVDIHPAAKIGRGIMLDHAT
                     GIVVGETAVIEDDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGA
                     KIGAGSVVLQPVPPHTTAAGVPARIVGKPGSDKPSMDMDQHFNGLHHTFEYGDGI"
     gene            complement(11943..12962)
                     /gene="gpsA"
                     /locus_tag="OQP62_001299"
     CDS             complement(11943..12962)
                     /gene="gpsA"
                     /locus_tag="OQP62_001299"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HCS1720894.1"
                     /translation="MNQSNASMTVIGAGSYGTALAITLARNGHQVVLWGHDPKHIATL
                     EHDRCNVAFLPDVPFPDTLHLESDLATALAASRNILVVVPSHVFSDVLRQIKPLMRPD
                     ARLVWATKGLEAETGRLLQDVAREALGDQIPLAVISGPTFAKELAAGLPTAISLASTD
                     ETFADDLQQLLHCGKSFRVYINADFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTAL
                     ITRGLTEMSRLGAALGADPATFMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVKGA
                     QDKIGQVVEGYRNTKEVRELAHRFGVEMPITEEIYQVLYCGKNAREAALTLLGRARKE
                     ELSRH"
     gene            complement(12962..13429)
                     /gene="secB"
                     /locus_tag="OQP62_001300"
     CDS             complement(12962..13429)
                     /gene="secB"
                     /locus_tag="OQP62_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015369180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HCS1720895.1"
                     /translation="MSEQNNTEMAFQIQRIYTKDVSFEAPNAPHVFQKDWQPEVKLDL
                     DTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQAGIFSISGIEGTQMAHCLGAYC
                     PNILFPYARECITSLVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA"
     gene            complement(13473..13724)
                     /gene="grxC"
                     /locus_tag="OQP62_001301"
     CDS             complement(13473..13724)
                     /gene="grxC"
                     /locus_tag="OQP62_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HCS1720896.1"
                     /translation="MANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEM
                     IKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR"
     gene            complement(13810..14241)
                     /locus_tag="OQP62_001302"
     CDS             complement(13810..14241)
                     /locus_tag="OQP62_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HCS1720897.1"
                     /translation="MQEIMQFVGRHPILSIAWIALLVAVLFTTFKGLTSKVKVITRGE
                     ATRLINKEDAVVVDLRQRDDFRKGHIAGATNLLPSEIKANNVGELEKHKDKPIIVVDG
                     SGMQCQESANALTKAGFEKVFVLKEGVAGWSGENLPLVRGK"
     gene            14489..16033
                     /gene="gpmM"
                     /locus_tag="OQP62_001303"
                     /gene_synonym="pgmI"
     CDS             14489..16033
                     /gene="gpmM"
                     /locus_tag="OQP62_001303"
                     /gene_synonym="pgmI"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HCS1720898.1"
                     /translation="MSVSKKPMVLVILDGYGYREEQQDNAILNAKTPVMDALWAKRPH
                     TLIDASGLEVGLPDRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKERTFFANPVLTNA
                     VDQAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPR
                     SAEASLKKFEDKFAALGKGRVASIVGRYYAMDRDNRWDRVEKAYDLMTLAQGEFQADT
                     AVAGLQAAYARDENDEFVKATVIRAEGQADAAMEDGDTLIFMNFRADRAREITRAFVN
                     ADFDGFARKKVVNLNFVMLTEYAADIKTAVAYPPASLANTFGEWMAKNDKTQLRISET
                     EKYAHVTFFFNGGVEEPFAGEERILINSPKVATYDLQPEMSSAELTEKLVAAIESGKY
                     DTIICNYPNGDMVGHTGVMEAAIKAVEALDNCIEQVTKAVESVGGQLLITADHGNAEQ
                     MRDPATGQEHTAHTNLPVPLIYVGEKNVKAVEGGKLSDIAPTMLSLMGMEIPQEMTGK
                     PLFIVE"
     gene            16043..17326
                     /gene="envC"
                     /locus_tag="OQP62_001304"
     CDS             16043..17326
                     /gene="envC"
                     /locus_tag="OQP62_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator EnvC"
                     /protein_id="HCS1720899.1"
                     /translation="MRGKAINTIQQAVKPRTFSVRPLFYASVLSAGVLLCAFSAHADD
                     RDQLKSIQADIAAKERDVRQQQQQRASLLAQLKTQEEAISAAARKLRETQSTLDQLNA
                     QIDEMNASIAKLEQQKASQERNLAAQLDAAFRQGEHTGIQLILSGEESQRGQRLQAYF
                     GYLNQARQETIAELKQTREQVATQKAELEEKQSQQQTLLYEQRAQQAKLEQARNERKK
                     TLAGLESSIQQGQQQLSELRANESRLRNSIARAEAAAKARAEREAREAQAVRDKQQEA
                     SRKGSTYKPTESERSLMSRTGGLGAPRGQAYWPVRGPILHRYGERLQGELRWKGMVIG
                     ASEGTEVKAIADGRVILADWLQGYGLVVVVEHGKGDMSLYGYNQSALVSVGAQVRAGQ
                     PIALVGSSGGQGRPSLYFEIRRQGQAVNPQPWLGR"
     gene            17330..18292
                     /locus_tag="OQP62_001305"
     CDS             17330..18292
                     /locus_tag="OQP62_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HCS1720900.1"
                     /translation="MPQFRRSILTLATLLAFAHPVFAGKLAIVIDDFGYRPHTENQVL
                     ALPPNISVAVLPNAPHAREMATKAHNSGHEVLIHLPMAPLSKQPLEKDTLRPDMSSDE
                     IERIIREAVNNVPYAVGLNNHMGSAMTSSLFGMQKVMQALEHYNLYFLDSMTIGNSQA
                     MRAASGTGVKVIKRKVFLDDTQNEADIRRQFNRTIELARRNGSAIAIGHPHPATVRVL
                     QQMVYRLPADITLVRPGSLLNEPQVDTSRPDLTPQKIDAPRNPFRGVKMCKPKKPLQP
                     VYATRFFSVIGESITQSSVIVWFQHQWQGWGKIAAPKNMSAKTD"
     gene            complement(18279..19313)
                     /locus_tag="OQP62_001306"
     CDS             complement(18279..19313)
                     /locus_tag="OQP62_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HCS1720901.1"
                     /translation="MKNSKTKVSIIIPLYNAGADFNACMASLIAQTWSALEIIIVNDG
                     STDHSIEIAKHYAEHYPHVRLLHQANAGASVARNLGLQAATGDYVAFVDADDLVYPKM
                     YETLMTMALNDDLDVAQCNADWCVRKTGHAWQSIPTDRLRSTGVLSGPDWLRMALASR
                     RWTHVVWMGVYRRALITDNNITFVPGLHHQDILWSTEVMFNATRVRYTEQSLYKYFLH
                     DNSVSRLQRQGNKNLNYQRHYIKITRLLEKLNRDYARRIPIYPEFRQQITWEALRVCH
                     AVRKEPDILTRQRMIAEIFTSGMYRRMMANVRSAKAAYQTLLWSFRLWQWRDKTLSHR
                     RMARKALNLS"
     gene            complement(19808..20833)
                     /gene="tdh"
                     /locus_tag="OQP62_001307"
     CDS             complement(19808..20833)
                     /gene="tdh"
                     /locus_tag="OQP62_001307"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine 3-dehydrogenase"
                     /protein_id="HCS1720902.1"
                     /translation="MKALSKLKAEEGIWMTDVPEPEVGHNDLLIKIRKTAICGTDVHI
                     YNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGG
                     RTHLCRNTTGVGVNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSF
                     DLVGEDVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMGVTRAVNVAKE
                     SLNDVMAELGMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKV
                     IFKGLFIKGIYGREMFETWYKMAALIQSGLDLSPIITHRFSVDDFQKGFDAMCSGQSG
                     KVILSWD"
     gene            complement(20843..22039)
                     /gene="kbl"
                     /locus_tag="OQP62_001308"
     CDS             complement(20843..22039)
                     /gene="kbl"
                     /locus_tag="OQP62_001308"
                     /EC_number="2.3.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020239151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine C-acetyltransferase"
                     /protein_id="HCS1720903.1"
                     /translation="MRGDFYKQLTNDLETARAEGLFKEERIITSAQQADITVADGSHV
                     INFCANNYLGLANHPELINAAKAGMDSHGFGMASVRFICGTQDSHKALEQKLASFLGM
                     EDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMVE
                     LEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFV
                     GENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNS
                     LAPAIVAASIKVLEMVEAGAELRDRLWANARQFREQMSAAGFTLAGADHAIIPVMLGD
                     AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVDAFTRIGK
                     QLGVIA"
     gene            22242..23174
                     /gene="rfaD"
                     /locus_tag="OQP62_001309"
     CDS             22242..23174
                     /gene="rfaD"
                     /locus_tag="OQP62_001309"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HCS1720904.1"
                     /translation="MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD
                     LNIADYMDKEDFLIQIMSGEELGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLH
                     YCLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANS
                     QIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA
                     AVNLWFLESGKSGIFNLGTGRAESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFT
                     QADLTNLRNAGYDKPFKTVAEGVTEYMAWLNRDA"
     gene            23177..24223
                     /gene="rfaF"
                     /locus_tag="OQP62_001310"
     CDS             23177..24223
                     /gene="rfaF"
                     /locus_tag="OQP62_001310"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001728214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-heptose--LPS heptosyltransferase RfaF"
                     /protein_id="HCS1720905.1"
                     /translation="MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPL
                     LSRMPEVNEAIPMPLGHGALEIGERRRLGHSLRERRYDRAWVLPNSFKSALIPFFANI
                     PHRTGWRGEMRYGLLNDARVLDKDAWPLMVERYVALAYDKGVMRTAKDLPQPLLWPQL
                     QVSEGEKSLMYSDFSLSSERPLIGFCPGAEFGPAKRWPHYHYAELAKQLINEGYQVVL
                     FGSAKDHEAGNEILAALNSEQQAWCRNLAGETQLEQAVILIAACKAIVTNDSGLMHVA
                     AALDRPLVALYGPSSPDFTPPLSHKARVIRLITGYHKVRKGDTAQGYHQSLIDITPQR
                     VLEELHSLLSEEGV"
     gene            24223..25176
                     /gene="rfaC"
                     /locus_tag="OQP62_001311"
     CDS             24223..25176
                     /gene="rfaC"
                     /locus_tag="OQP62_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase RfaC"
                     /protein_id="HCS1720906.1"
                     /translation="MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQI
                     PSWHSAVDRVIPVAIRRWRKAWFSAPIKAERIAFHRAVCAYQYDAVIDAQGLVKSAAL
                     VTRLAHGIKHGMDWSTAREPLASLFYNRKHHIAKQQHAVERTRELFAKSLGYDKPQSQ
                     GDYAIAKHFLHCQQAVSDPYAVFLHATTRDDKHWPEANWRELIGLVGNTGLRIKLPWG
                     APHEEARAKRLAEGFDYVDVLPRMSLEEVARVLAGAKFVVSVDTGLSHLTAALDRPNI
                     TLYGPTDPGLIGGYGKNQMACCSPEQNLANLDATSVFGKIH"
     gene            25216..>25665
                     /locus_tag="OQP62_001312"
     CDS             25216..>25665
                     /locus_tag="OQP62_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase RfaL"
                     /protein_id="HCS1720907.1"
                     /translation="MLTTSLTLNKEKWKPIWNKALVFLFVATYFLDGITRYKHLIIIL
                     MVITAIYQVSRSPKSFPPLFKNSVFYSAAVLSLILVYSILISPDMKESFKEFENTVLE
                     GFLLYTLLIPVLLKDETKETIAKIVLFSFLTSLGLRCLAESILYIEDY"
BASE COUNT         6102 a         6964 c         6727 g         5872 t
ORIGIN      
        1 gatgccctgt tatgggatgc tgactctggc acattcagcg ccagccgtaa cggaagcgcc
       61 agcaaaatca ccaatctggc ggcgggtacc ctggccgcgg acagtacaga cgccgttaac
      121 ggctcacaat tgtatgaaac caaccagaag gtggatcaaa acacctctgc tatcgcagat
      181 attaatacgt ccatcaccaa tcttagctct gacaacctga gctggaatga aacaacgaat
      241 tcgttctctg ccagccacgg aagtagtacg acaaacaaaa tcaccaacgt tgctgccgga
      301 gagctgtctg aagaaagtac cgacgcggtt aacggatcgc agttgttcga aaccaatgaa
      361 aaagtggatc agaacacgac cgatatcgcc gccaatacca ccaacatcac tcagaacagc
      421 accgcgattg agaacctgaa tacttctgtc tccgacatta atacgtccat taccggcctc
      481 actgataacg ctctgttatg ggacgaagac accggcgctt tcagcgcaaa ccacggtgga
      541 agcaccagta aaataaccaa tgtcgccgcc ggggcgcttt ctgaggacag tacagacgcg
      601 gtaaacggat cacagttgta tgaaaccaac cagaaggtgg atcaaaacac ctctgctatc
      661 gcggatatca atacgtccat caccaacctt ggtaccgatg cactgagctg ggatgacgaa
      721 gagggtgcgt tcagcgccag ccacggtacc agcggtacca ataagataac taatgtagca
      781 gcaggtgaaa tcgccagtga cagtactgac gccattaatg gctctcagct ctatgaaact
      841 aacatgctga tttctcagta taatgaatct attagccaac tagccggcga taccagcgaa
      901 acctatatca cggaaaatgg taccggcgtg aaatacatcc gtacgaatga taacgggctt
      961 gaaggccagg atgcatacgc aacgggtaac ggcgcaacgg cagtaggtta cgacgccgtc
     1021 gcctctggcg ctggctgtct ggctcttggc caaaacagca gcagcagcat tgagggcagt
     1081 atcgctttgg gcagtggctc cacctctaac cgcgctatta caaccggtat acgagaaacg
     1141 agcgcaacaa gcgatggcgt ggtgattggc tacaatacaa cagacagaga gttgctgggc
     1201 gcgttgtcat tggggacgga tggagaaagc tatcgtcaaa ttaccaacgt tgctgacggc
     1261 tctgaagcgc aagatgcggt aacagttcgt cagttacaaa atgccattgg tgcggtcact
     1321 actacaccga ccaagtacta ccacgcaaac tcaacggaag aagattcact ggctgtcgga
     1381 actgactcac tggcaatggg tgcgaagact atcgtcaatg ctgatgcagg tattggtatt
     1441 ggtctgaata cactggtgat ggctgatgcc atcaacggga ttgctatcgg ttctaacgca
     1501 cgcgccaacc atgcaaacag tattgcaatg ggtaatggtt ctcagaccac tcgcggtgca
     1561 cagactgact acaccgccta caacatggac acaccgcaga actctgtcgg tgagttctct
     1621 gtcggcagtg aagacggtca acgtcagatc actaacgtcg cggcgggttc ggcagatacc
     1681 gatgccgtta acgttggtca attgaaagta acggacgcgc aggtttccag gaatacccag
     1741 agcattacta acctgaatac tcaggtatcg aatctggata cccgcgtcac caatatcgaa
     1801 aacggcattg gcgatatcgt cactaccggt agcaccaagt acttcaagac caacaccgat
     1861 ggcgcagatg caaatgccca gggtgcggac agcgtcgcga ttggctctgg ctctattgct
     1921 gccgctgaaa acagcgtggc gttaggcaca aattccgtcg cagatgaagc taatactgtg
     1981 tctgtcggct cttctactca acaacgccgt attaccaacg ttgccgcagg ggtgaacaac
     2041 actgacgcgg ttaatgtggc gcaactgaaa gcctcagaag caggctccgt gcgttatgaa
     2101 accaatgcag atggctcggt taactatagc gtgctcaact tgggagacgg gagtggcggc
     2161 accactcgga tcggcaatgt ttcagcggcg gtgaatgata cggatgcggt taactatgcg
     2221 caattgaaac gcagcgtcga agaagcaaac acctataccg accagaaaat gggggaaatg
     2281 aacagcaaaa tcaaaggcat agaaaacaag atgagcggcg gtatcgcttc agcgatggcg
     2341 atggccggtc tgccacaagc ctacgccccg ggcgccaaca tgacctcgat tgctggcggt
     2401 acgtttaatg gtgaaagtgc cgtcgccatt ggtgtctcca tggtaagtga aagcgggggc
     2461 tgggtgtata aactgcaagg aaccagcaac agccagggcg attactctgc agccattggc
     2521 gcgggcttcc agtggtaatg aagtaacaac actcccgaca tcaaaggcaa tggcataatg
     2581 ccattgcctt ttcacttccc tttgtggtcc tctcctctca attggcccta ccaattttag
     2641 ccagttacca cagcctactc acatttcact aaattaactc tacaatatcg ttgccaataa
     2701 ataacatccg gttaactatt tgttgtcatt atccatacac aacaatattg gcaggaccac
     2761 ttttacacat aatgtgactt caactagatg agcaaagatt catcccatta tgcgtgtggt
     2821 tctcaggaga cctgcaatga acctctggca acaaaactat gacccggcgg gtaatatctg
     2881 gctttccagc ctgatcgcat cgctcccaat cctgttcttc tttttcgccc tgattaaact
     2941 caagctgaaa ggctatgttg ccgcttcgtg gacggtggtt atcgcgctcg ccgtcgcgct
     3001 gctgttctat aaaatgccgg tcgatcacgc gctggcatcg gtcgtgtatg gcttcttcta
     3061 cgggctatgg ccgatagcct ggataatcat cgccgcggtc tttgtctata aaatttcggt
     3121 caagaccggg cagtttgaca ttattcgctc gtcaattctg tcgattaccc ccgaccagcg
     3181 tctgcaaatg ctgattgtcg gcttctgctt cggcgcgttc cttgaaggcg cggcgggttt
     3241 cggcgcgccg gtggcgataa ccgctgcgct gctggtgggc ctgggcttta accctctgta
     3301 tgcggcaggg ctgtgcctga ttgtaaacac cgcgccggtc gcctttggcg cgatgggtat
     3361 tccgattctg gttgccggac aggtcacgga cctggacagc tttgaaatcg gtcagatggt
     3421 aggccgccag ttgccgttcc tgaccattat cgtgctgttc tggattatgg cgattatgga
     3481 cggctggcgc ggcgtgaaag aaacctggcc tgcggtgatg gtcgctggcg gctcgtttgc
     3541 tatcgcccag tatctcagct ccaactttat cgggccggaa ctgccggaca tcatctcttc
     3601 actggtgtct ctggtgtgtc tgacgctgtt cctcaaacgc tggcagccgg tacgcatctt
     3661 ccgcttcggc gatatgggcg cgtcgcaggt cgatcagacg ctggcccgca cccgttatac
     3721 gacaggacaa attgttcgcg cctggtcgcc gttcctgttc ctgaccgcca cggtcacgct
     3781 ctggagcata ccgccgttca aagcgctgtt tgcccccggc ggcgcgctgt atgactgggt
     3841 aattaacgtt ccggtaccgt atctcgataa actggtcgcc cgtatgccgc cggtcgtaca
     3901 cgaagcgacc gcttacgcgg cggtgtataa atttgactgg ttctccgcca ccggcactgc
     3961 gatcctgttt gccgcgctgt tgtctattgt ctggctgaaa atgaaaccct cagccgcaat
     4021 ccagaccttt ggcagcacgc tgaaagagct ggcgttgccg atttactcca tcggcatggt
     4081 gctggcgttc gcgtttatct cgaactattc cgggctttcc tccacgctgg cgttagcgct
     4141 ggcgcacacc ggcagcgcct tcacgttctt ctcgccgttc ctcggctggc tgggcgtctt
     4201 cctgaccggc tcggatacct catctaacgc gctgtttgcc tctctacagg ctaccgcggc
     4261 gcagcaaatc ggcgtctctg atgtactgat ggtggcggcg aacaccactg gaggcgtaac
     4321 cgggaagatg atctcgccgc agtctatcgc catcgcctgc gcggcggtgg gactggtagg
     4381 gaaagagtcc gatctgttcc gttttaccgt caaacacagc ctgatcttca cctgtatggt
     4441 gggcgtgatc actacgcttc aggcctatgt tttaacctgg atgattccgt gattgtgatg
     4501 ccaaaacgcc tgtcagacga gattgcctct cgcgtgcggg cgctgattga agaacaaaac
     4561 ctggaagcgg gcatgaaatt gcccgccgag cgccagttgg ctctacagct tggcgtatca
     4621 cgcaactctt tacgcgaagc gctggcgaag ctggtcagcg aaggcgtgct ggtgagccgt
     4681 cgcggcggcg ggacatttgt ccgctggcag cacgaaacct ggtctgaaca gaatatcgtg
     4741 caaccgctga aaatgctgat ggcgaacgat ccggactaca gtttcgacat tctggaagcc
     4801 cgccacgcca ttgaagccag tacggcctgg cacgccgcca tgcgtgccac cgccgccgac
     4861 aaagagaaaa tcagactctg ctttgatgcg acgctcagcg aagacccgga tctcgcctcc
     4921 caggccgacg tgcgctttca tctggcgatc gcggaagcct cgcataatgt ggtgctgttg
     4981 caaaccatgc gcggtttctt cgacgtcctg caatcctccg tcaaacagag tcgccagcgt
     5041 atgtatctcg ttccgcccgt attctcaaag ctgacggaac aacaccaggc ggtgttggac
     5101 gccattctgg acggtaacgc cgagggcgcg cgtaaagcga tgatggcgca cctcagtttt
     5161 gtccacacca cgattaaacg atttgatgaa gaccaggccc gccaggcgcg cattacccgc
     5221 ctgcccggcg accataatga gatgaccagg gagaataaat catgattatt tcagcaacca
     5281 gcgattatcg cgccgcagct cagcgcacgt tgcctccttt cctcttccac tacatcgacg
     5341 gcggcgcgta tgcggaatat accctgcgcc gaaatgtgga agacctgtcg caagtcgctc
     5401 tgcgccagcg cgtgctgaaa aatatgtccg atttaagcct ggaaacgacc ctgtttaacg
     5461 aaacgttgtc gatgccggtg gcattagcgc cggtaggtct gtgcggcatg tacgcccgtc
     5521 gcggcgaagt acaggccgcc gccgccgcag acgcaaaggg cattccgttc accctttcca
     5581 ccgtctccgt ctgtccgatt gaagaagtag cccccacgct taaacgcccg atgtggttcc
     5641 agctttatgt actgcgtgac cggggcttta tgcgtaatgc gctggaacga gcaaaagcgg
     5701 cgggctgctc cacgctggtc tttaccgtgg atatgccgac gccgggcgcg cgctaccgtg
     5761 acgcccactc cgggatgagc ggcccaaacg cggccatgcg ccgttactgg caggcggtga
     5821 tgcaccctaa atgggcgtgg gatgtcggcc tgaacggtcg cccgcatgat ttaggcaata
     5881 tttccgccta tctgggtaaa ccgaccggcc ttgaggacta tatcggctgg ctggcaaata
     5941 acttcgatcc gtccatctcc tggaaagatc tggagtggat acgcgaattc tgggacggcc
     6001 caatggtgat caaagggatc ctcgatccag aagatgcccg cgatgcggta cgtttcggcg
     6061 ctgacggtat cgtggtgtcg aatcacggcg gccgccagct cgatggcgtg ctctcttccg
     6121 cccgcgccct gcccgccatt gccgatgcgg tgaaaggcga tatcgccatt ctggcggata
     6181 gcgggattcg taacgggctg gatgtcgtgc gtatgattgc gctgggggcc gataccgtac
     6241 tgctgggtcg ggcctatctc tacgcgctgg cgacggcagg aaaaactggc gtcgctaacc
     6301 tactggacct gatcgagaaa gagatgaaag tcgccatgac cctgaccggc gcgaaatcca
     6361 ttagcgaaat cagtggcgat tcactggtgc aggaactggg gaaaagtttg cccgccgcgc
     6421 tggcgccaat gagcaaaggc gatgccgcct gaacgtctgg cgcgtgagag cccggtaaat
     6481 ttctgctatt ctgccccccg catttaaggg ggcatcatgc ttaacatcgt actcttcgaa
     6541 ccagaaatcc cgccgaatac cggcaacatc attcgtcttt gcgccaatac cggctttcgt
     6601 ctgcacatca tcgaaccgat ggggtttgcc tgggatgata agcgcttacg ccgcgcaggg
     6661 ttggactatc acgaattcgc cgcggttcag cgccatcacg attatgccgc ctttgtcgcc
     6721 gccgaaaatc cacagcgcct gtttgcgttg acgacaaagg gcacgcccgc ccatagcgcc
     6781 gtaagctatc aggatggcga ttatttgatg tttggcccgg aaacgcgcgg cctgcccgcc
     6841 agcattctcg atgcgttgcc taaagagcag aagattcgca ttccgatgat gccggatagc
     6901 cgtagcatga acctgtcgaa tgcggtgtcg gtggtggtgt atgaagcgtg gcgccagtta
     6961 ggataccccg gcgcggtatt gcggtcgtaa tatattcaat gccggatggc ggctaacgcc
     7021 tgatccggcc tggccgatcc cgatggcatg ttcccgttta tgcggactct cgctcaatca
     7081 aatgaaagcc aatatccaca atagcttctg cgcacggttt ctgttcaata cgatcggcca
     7141 acagcgtagc ggcgcgctga ccaatggcgc gtctgtcaac gcttacggta gtaattgacg
     7201 gtcgattgct ggcggcaaaa tcaaggtcgc caaaaccaat aaccgctaaa tcatgcggga
     7261 tgcgcaaacc acggctttcc gcctccatca tcgccccctg tgccagggta tcagaactgc
     7321 aaacaatgac atcaaacgtc ccttcgtcaa aaagctggct taaaccgcta cgccccagcg
     7381 aaagcgatgc cggaaggggg acatccacct gcggtacggc atgaatagcg tggcgttgaa
     7441 gaacactaca taacccctgc ttacgttgcg cggctcggcg atcggcggtc cacaacaagc
     7501 cgggacgacg atagccctta ctcagaagat actcccccgt cgcctgcccg actttttcat
     7561 gggaaaaacc gaccagcata tcaagcggcg tgggcgttaa gtcccaaatt tccaccaccg
     7621 gaatagccgc gttcaggatg acctttttca gttctatcgt gtgatggatc ccggtaagca
     7681 ccacgccatc ggggcggcgg gaaagcagtg tcgccaccaa ctccgcttcc gtttgttcgg
     7741 tatatcccgc cacgcacagc aatatgtgat atccgcgtcg ggccagttca tcgctcagtg
     7801 actggatggt atcgacaaac atgttgttgt taatttgcgg cacgacgaca gcgattaatt
     7861 tactccgtcg cgacgccaga ccaccggcta acgcgttggg tatgtagcct gtgacgcgaa
     7921 ccgcctgcat gactttctca accgttttgg ggcgaaccag ttgtggcgaa ttcaatgccc
     7981 ggctgactgt catcggagac agcccggcgc tacgtgctac atcttccagc gtcggcgcac
     8041 gaggtgattt ggttctcttc acgtctgatg cccctgcaaa gattggctga tttatccgcg
     8101 cattattcat catgcctgcg gctattgcca gcttcgcatc aggaaaggcc gtaaatacag
     8161 tagcttatca agctcagtca ttacaaaatg atagcgacat cattttgtat tatgcatttc
     8221 cccagatatt tttggatcgt gatccatttt gcaataaatc ctgcttttta tacgacatat
     8281 gtgatcaaat gttcaaatca acatcaactt tctggatcct gcgttcgctt aataataaaa
     8341 atgttagcgc aatcattttg tgtttatcag gagaaaaaaa atggctttaa gcgcgaattc
     8401 cgacgccgta acgtatgcaa aagcggcgaa taccagaacc gcggcagaaa ccggcgatcg
     8461 tatcgaatgg gtgaagctat cactggcttt tctaccgctg gcgacgccag tgagtgacgc
     8521 gaaggtactg accggtcgcc agaaaccttt gaccgaagtg gcaatcatca ttgccgaaat
     8581 ccgcagtcgc gatggctttg agggcgttgg ttttagctac tccaaacgtg ctggcggcca
     8641 gagtatttat gctcacgcca aagagatagc cgacaatcta ctgggcgaag accccaatga
     8701 tatcgacaaa atatacacca agctgctgtg ggccggagcc tcggtggggc gtagcgggat
     8761 ggcggtacag gctatctccc ctatcgatat cgccttatgg gatatgaagg ctaaacgtgc
     8821 cggtctgcca ctggcaaaac tgttgggcgc gcaccgcgac tccgttcagt gttacaacac
     8881 ctcagggggg ttcttgcata caccgctcga tcaagtgctg aaaaatgtgg tgatttcccg
     8941 cgaaaatggc attggcggta ttaagttgaa agtcggacaa cccaactgcg ctgaggatat
     9001 tcgccgctta accgcagtac gtgaagcgct tggggatgag ttcccgttaa tggttgacgc
     9061 taaccagcag tgggatcgcg aaacggctat ccgcatgggg cgtaaaatgg aacagttcaa
     9121 tcttatctgg attgaagaac cattagatgc ttacgacatc gaaggccacg cccagcttgc
     9181 tgccgcgctg gatacgccta tcgccaccgg ggaaatgctg accagtttcc gggaacacga
     9241 gcagttgatt ctgggcaatg ccagcgattt cgttcagcca gatgcgccgc gtgtcggcgg
     9301 tatctctccg ttcctgaaga ttatggatct ggcggcgaaa cacgggcgta agctggcgcc
     9361 gcactttgcg atggaagtac acctgcacct ttccgcagcg tatcccctgg agccgtggct
     9421 ggaacatttc gagtggctga acccattatt caacgagcaa cttgagctgc gcgatggccg
     9481 catgtggatt tccgatcgtc atggtctggg tttcacgctc agtgaacaag cgcgccgctg
     9541 gacacaatta acatgtgaat ttggcaaacg cccttaaccc gactggcggg aatccgtccc
     9601 gcctctctta ccttacagga tgcattctgc ccttatctga ggagtagata atgaacacaa
     9661 taataaagtg cacaaaagtg cgtcatacca ttcttatatt tttatttctt gctaccgtat
     9721 ttaattatgc ggatcgcgca actctatccg tagttgcccc aataatgagt aaagaattag
     9781 gttttgatcc ggaagcgatg ggcctggcct tctcctcatt tggtattgcc tatgtcatta
     9841 tgcaactacc cggcggttgg ctattagacc gctacggttc acgactggtt tacggttgcg
     9901 cattgattgg ctggtcgtta gtaaccatgt ttcagggaac gatctatctg tatggcagcc
     9961 cattaattgt actggttact ctacgtctgc tgatgggcgc gattgaagcg cctgcctttc
    10021 cggcgaacag tcgtttaagc gtacaatagt ttcccaataa tgaacgaggt ttcgttactt
    10081 cagtttatca ggctgcgcaa tatatctcgc tgggcattat caccccgcta atgacgatca
    10141 ttctgcataa tttaagctgg cattttgtct tctattatat tggcgccatt ggtgtgatgt
    10201 tcggtatatt ctggttaatg aaagtcaaag atccgatgca ccactcaaaa gttaatcaag
    10261 cggaaattga ctatattcgt agcggtggtg gcgagccctc tctgggctgt aaaaaggagc
    10321 cgcagaaaat aacgttcgcg cagattaaaa ccgtctgtgt taaccggatg atgatcggtg
    10381 tttacatcgg gcaattctgc gtcacctcta tcacctggtt cttcctgacc tggttcccga
    10441 cctatctgta ccaggcgaaa ggcatgtcga ttctgaaagt cggttttgtg gccagtattc
    10501 cagccattgc cggttttatt ggcggcctgc tcggcggcgt gttctccgac tggctactca
    10561 aacgcggcta tagccttacc gtcgcgcgga aactgcctgt tatctgcggt atgttgctct
    10621 cttgcgtaat tgtgatcgcc aactacacct cttcagaatt tgtggtcatt gcggcgatga
    10681 gtctggcctt ttttgccaaa gggtttggta acctgggctg gtgcgtactc agcgacacct
    10741 cgccgaagga agttctgggt attgctggcg gcgtatttaa catgtgcggc aatatggcaa
    10801 gcatcgttac gccactggtc atcggcgtga ttcttgccaa tactcagtcg ttcgactttg
    10861 ccattttata cgttggctcg atgggactta ttggtctcat ttcatatctg tttatcgtcg
    10921 gcccgctgga tcgcatcacg ctgacatcat ccgcagcctg attgtccaca ttgcgaattc
    10981 ttcgctccgc tgttccggga ttgcactcca tcggaacagc gttttttagt tgtaccgcgc
    11041 aattcagatg ccgtcgccat actcaaacgt atggtgtagc ccgttgaaat gctggtccat
    11101 atccatcgac ggcttatcgc tgcccggctt gccgacaata cgcgccggaa cgcctgcggc
    11161 ggtagtgtgc ggcgggacag gctgtaaaac gacggagcct gcgccaattt tcgcgccgcg
    11221 ccccacctcg atattgccga gaattttcgc gcccgcgcca atcatcacgc cttcgcggat
    11281 tttaggatgg cgatcgccgc tcgttttccc ggtaccgccc agggtgacgg attgcaggat
    11341 cgacacatca tcctcaataa ccgccgtctc ccccaccaca ataccggtgg catggtcgag
    11401 cataatcccg cggccaattt tcgctgccgg gtgaatatcc acctgaaacg agaccgaaac
    11461 ctgattttgc aggaagatag ccagcgcgcg gcgaccttta ttccacaacc agtgaccaat
    11521 gcggtaggcc tgtagcgcat gaaagccttt cagatataac agcggcgtgg agtatttatc
    11581 caccgccgga tcgcgagtgc gcacggcctg aatatcgcag gctgccgacg cgatcatttc
    11641 cgggtcggcg gcataggctt cttcaactac ttcacggata gcgatagcgg gcatgatggg
    11701 cgaagccagt ttatttgcca gcatatagct cagcgcactg cccagatttt catgcttgag
    11761 tagcgtggcg tgataaaaac tggccaacat aggctcacag tcagctaaag cgcgggcttc
    11821 agctttaata ttcttccaga cgatttccag ttcttcacac ggcatggctt actccagacg
    11881 ggcagaaaac gaccaacccg ttctgtgcgg gttgggtcgt ttatgcaaac agttccttac
    11941 ggctagtggc gactcagctc ttccttgcgg gcgcgaccta ataacgttaa tgctgcctcg
    12001 cgcgcgtttt ttccgcaata caatacttga taaatttcct cggttattgg catttcaaca
    12061 ccaaaacggt gcgccaattc acgaacttct ttcgtattgc gatagccttc gaccacctgg
    12121 ccaatcttat cctgcgcgcc tttaacgtcc atgccctggc caagcatcat gccaaaacga
    12181 cggttgcgcg actggttgtc ggtacaggtc agcaccagat cgcctaaacc cgccatcccc
    12241 ataaaggtgg cgggatcggc accaagcgct gcgccaagcc gcgacatttc ggtcagtcca
    12301 cgcgtgatta gcgccgtgcg ggcgttcgcg ccgaagccga tgccgtcaga catccccgcg
    12361 ccaatcgcaa tcacgttttt caccgcgccg ccaagctgca cgccgataaa atccgcattg
    12421 atatagacgc gaaaactttt tccgcagtgc aacagttgct ggagatcgtc ggcaaaggtc
    12481 tcatcggttg aggctagcga gattgccgtc ggcaaacccg ccgccagctc tttagcgaac
    12541 gtcggaccgg aaatcaccgc cagcgggatt tgatcgccta acgcctcgcg agcgacatcc
    12601 tgcaacaggc gccccgtttc cgcttccagg cctttggtcg cccataccag acgcgcatcc
    12661 ggacgcatca gcggtttaat ctgccgcagc acgtcgctga aaacatggct tggcaccacc
    12721 accagaatgt tacgactggc cgccagcgcg gttgctaagt cgctttccag gtgtaacgta
    12781 tcgggaaaag gcacatcggg aaggaacgcg acgttgcagc gatcgtgctc cagggtcgcg
    12841 atatgttttg ggtcgtggcc ccacaggaca acctggtggc cgtttctcgc cagagtgatg
    12901 gcgagagcgg tgccgtacga gccggcaccg atgactgtca ttgacgcatt actttggttc
    12961 atcaggcatc ctgatgttct tcagtacctt cgccagcctg ctgctgcaaa tagttcatga
    13021 acagcgcatc aaagttgacc ggcgcaaggt tcagttgcgg gaacgtaccg cgtgaaacca
    13081 gactggtgat gcactcgcga gcatacggga acagaatgtt cgggcagtat gctcccaggc
    13141 aatgcgccat ctgagtgcct tcaataccgc tgatggagaa aataccggcc tgctgaactt
    13201 cgcacaggaa cgcggtttct tcccccaggg aagccgttac ggtaacacgc agcacaactt
    13261 cataaacgtc atccgccagt tgggaagatg ccgtatcaag atctagttta acctctggct
    13321 gccaatcttt ctggaaaaca tgcggtgcgt ttggcgcttc gaaagaaaca tccttggtat
    13381 agatacgttg gatctggaaa gccatttcag tgttattttg ttctgacatg tgtaaaaccc
    13441 tttagtgttg tccttaaata cttgagtacg ccttaacgca acagcggatc cagtccacca
    13501 cgcgcatcca gcgcatacaa gtcgtcacaa ccgccaatgt gctgtgcatc aataaaaatt
    13561 tgcggaaccg tcgttcggcc actacgtttg atcatctctt cacgcttcac ggcgtcgccg
    13621 tcaatcgcaa tttcctggaa actcacgccc ttgctgttta acagcgcctt tgcacgatgg
    13681 caaaacgggc aggttgcttt ggtgtagatt tcaatattgg ccatgacttc gctcctgttt
    13741 tttacccgat ggatttcatg tcgacgcaag ggcaagtcat tccccttgcg tcatgaaaac
    13801 gacgggtaat cacttaccgc gcaccagagg cagattctcg ccgctccagc ctgctacgcc
    13861 ttctttcaac acaaagacct tttcaaagcc ggcttttgtc agcgcgttag cggattcctg
    13921 gcactgcata ccagaaccgt cgaccacgat aattggcttg tctttgtgct tttccagttc
    13981 gccaacattg ttggctttga tttcgctcgg cagcaaattg gtcgcgccag cgatatggcc
    14041 tttacggaaa tcgtcacgtt gacgtaaatc cacaacaacg gcgtcctctt tgttgataag
    14101 gcgcgtggct tcgccgcgtg taatcacctt aacttttgaa gtcagacctt tgaacgtggt
    14161 aaataaaacc gccaccagta acgcaatcca ggcgatactc agtatgggat gacggccaac
    14221 aaattgcata atttcttgca tggggggtaa caactcccga cgtagtgatt aaaaaaccag
    14281 gaaaggagta tacctgcgca gtggcgcaaa tacagccaga gcgtgcactg gaatgcattt
    14341 ttgcggggcg ctacgaaaaa aaatcacgct attacttgcc ttctcacgcc agcgcgatcc
    14401 ctttctttga tcttctgagg ctattttatc gattcagctg tagtaaaatt acgcaattat
    14461 tttgtctatt gagtatgagg ttgtcgcaat gtcggtttct aaaaaaccta tggtactggt
    14521 gattctggat ggctacggct accgtgaaga acagcaggat aacgctatct taaacgccaa
    14581 aaccccggtg atggatgctc tgtgggcaaa acgtccgcat accctgatcg acgcatccgg
    14641 tctggaagtg ggtctgcctg accgccagat gggcaactcc gaagtgggcc acgttaacct
    14701 gggcgcaggc cgcatcgttt atcaggacct gacgcgtctg gacgttgaaa ttaaagaacg
    14761 tactttcttt gctaacccag tcctgaccaa tgcggtagac caggcgaaaa acgccggtaa
    14821 agcggttcat attatgggtc tgctgtccgc gggcggcgtc cacagccacg aagatcacat
    14881 tatggcgatg gtggagctgg ccgcagagcg cggcgcagaa aaaatctatc tgcacgcctt
    14941 cctcgacggt cgcgacacgc cgccgcgcag cgctgaagcc tcgctgaaaa aattcgaaga
    15001 caaattcgcc gcgctgggca aaggtcgcgt ggcgtctatc gtcggtcgtt actacgctat
    15061 ggaccgcgac aaccgttggg atcgcgtgga aaaagcgtat gatctgatga ccctggccca
    15121 gggcgaattc caggcggata ccgctgtggc tggcctgcag gccgcttacg ctcgtgatga
    15181 aaacgatgag tttgtcaaag cgaccgttat ccgcgccgag ggccaggctg atgcggcgat
    15241 ggaagacggc gacacgctga ttttcatgaa cttccgcgct gaccgcgcgc gcgaaattac
    15301 ccgcgctttc gttaatgctg atttcgacgg ctttgcgcgt aagaaagtgg ttaatctgaa
    15361 cttcgtgatg ctgaccgaat acgccgccga tatcaaaact gccgttgcct acccaccagc
    15421 gtcgctggcg aatacctttg gcgaatggat ggcgaaaaac gacaaaactc agctgcgtat
    15481 ttccgaaacg gaaaaatatg cgcacgtaac ctttttcttt aacggcggcg tagaagaacc
    15541 gtttgctggt gaagagcgta ttctgatcaa ctcaccgaaa gtggccactt atgacctgca
    15601 accggaaatg agctctgcag aattgactga aaaattggtc gcggcgatcg aaagcggtaa
    15661 gtacgacacc atcatttgta actatccaaa cggcgatatg gtcggtcata ccggcgtgat
    15721 ggaagccgcc atcaaagcgg tggaagcgtt ggataactgc attgaacagg taacaaaagc
    15781 ggttgagtcc gttggtggac aactgttgat taccgcggac cacggcaacg cggagcagat
    15841 gcgcgatccg gcgaccggtc aggagcatac cgcccacacc aacctgccgg tgccgctgat
    15901 ttatgtcggc gagaaaaacg tgaaggcggt cgaaggcggc aaactttcag acattgcgcc
    15961 taccatgctg tcgctgatgg ggatggaaat cccgcaagag atgactggta agccgctgtt
    16021 catcgtggaa taatccctcc ccatgagggg aaaggcgatt aacaccattc aacaggccgt
    16081 gaaaccaaga acgttttcag tcaggccttt gttctacgcc agcgtactta gcgctggcgt
    16141 attgttgtgc gccttttccg cccacgcgga tgaccgtgat caactcaaat ctattcaggc
    16201 cgatatcgcc gcgaaagaac gcgacgtacg ccagcagcag caacagcgcg ccagcctctt
    16261 ggcacaactg aaaacccagg aagaggccat ctcggccgca gcgcgtaagc tgcgcgaaac
    16321 gcaaagcact ctggatcagt taaacgcgca aattgatgag atgaacgcct caattgccaa
    16381 actggagcag caaaaagcca gccaggagcg taatctcgct gcgcagttgg acgccgcttt
    16441 ccgccagggc gaacacaccg gcattcagct tattcttagc ggagaagaga gccagcgtgg
    16501 gcaacgcctg caggcctact tcggctatct gaaccaggcg cgccaggaga ctatcgccga
    16561 actgaaacag actcgcgaac aggtcgccac gcaaaaagcc gagctggaag agaagcaaag
    16621 ccaacaacaa acgttgctgt atgaacagcg cgctcagcag gcgaagctgg aacaggcgcg
    16681 taatgaacgt aagaaaacgc ttgccggact ggagtcgtct attcagcaag gccagcaaca
    16741 gttaagcgaa ctacgcgcca acgaatcacg cctacgcaac agtatcgcgc gggcggaagc
    16801 ggcggccaaa gcgcgagcgg agcgtgaagc ccgcgaagcg caggcggtac gcgataagca
    16861 gcaggaagcc tcgcgtaaag gcagcaccta taagccgacg gaaagcgagc gctcgctaat
    16921 gtcccgcacc ggcggtctgg gcgcgcctcg cggtcaggca tactggccgg tacgtggccc
    16981 gatattgcat cgttatggcg aacggctgca gggtgagcta cgttggaagg ggatggtgat
    17041 cggcgcgtcg gaaggcaccg aggtcaaagc catcgccgac ggcagggtga ttctggcgga
    17101 ctggctgcaa ggctatggcc tggtggtggt cgtggagcat ggtaaaggtg atatgagcct
    17161 ttacggctat aaccagagcg cgctggtcag cgtaggcgcg caggtgcgcg ccggacaacc
    17221 tatcgccctt gtgggcagta gcggcggtca gggcagacct tcgctttatt tcgaaattcg
    17281 tcgccagggt caggccgtca atccacagcc gtggttggga agataagttt tgcctcagtt
    17341 tcgtcgctcc attctcacgc tggccacttt gctggcattt gcacatcccg ttttcgctgg
    17401 caagctcgcc atcgtgattg atgattttgg ctatcgcccg cacacggaaa accaggttct
    17461 ggcgctgccg ccaaacatct ccgtcgctgt actgcccaac gcgccgcacg cgcgcgaaat
    17521 ggcgactaaa gcgcacaata gcgggcatga ggtgttaatc catctgccga tggcgccgct
    17581 aagcaaacag ccgctggaga aggatacgct gcgaccagat atgagcagcg atgagatcga
    17641 gcgcattatc cgcgaggcgg taaacaacgt gccgtatgcc gttgggctta ataaccacat
    17701 gggcagcgca atgacttcca gcctgttcgg tatgcaaaaa gttatgcagg cgctggaaca
    17761 ttacaatctc tattttctcg acagcatgac gattggcaat agccaggcga tgcgcgcggc
    17821 atccggtacg ggtgtgaaag tgatcaagcg caaagtgttc ctcgacgata cgcaaaacga
    17881 ggcggatatc cgtcgtcagt ttaatcgcac tatcgaactg gcccgtcgca acggttccgc
    17941 tatcgcgatt ggtcatccgc atcccgcaac ggttcgcgtg ctgcaacaga tggtttatcg
    18001 cctgccggca gatatcaccc tggtacgtcc aggcagcctg ctcaacgaac cgcaggtaga
    18061 tacgtctcga cctgatttga cgccgcagaa aattgacgcg ccgcgcaatc cctttcgcgg
    18121 cgtgaagatg tgcaagccga aaaaaccgct gcaaccagtc tacgctacgc gctttttcag
    18181 cgtcatcggc gagagcatta cgcaaagttc cgtgattgtc tggtttcagc accagtggca
    18241 aggctggggg aaaatcgccg cgcctaaaaa catgagcgct aagacagatt gagcgcctta
    18301 cgggccatac gacggtgcga caaggttttg tcgcgccatt gccacagccg gaaggaccag
    18361 agcagcgtct gataagccgc tttcgcgctg cggacgttag ccatcatccg tctatacatg
    18421 ccagaagtaa aaatttcggc aatcatacgc tggcgggtca aaatatcagg ttctttacgc
    18481 accgcatgac aaacgcgtaa cgcttcccag gtaatttgct ggcgaaactc cgggtaaatc
    18541 ggaatacgcc gggcataatc acgattgagc ttttctaata accgcgtaat tttaatataa
    18601 tgccgctgat aattaagatt tttattgcct tgtctttgca aacggcttac cgaattatca
    18661 tgcaggaaat atttatataa tgattgttcg gtataacgta cgcgcgtggc attaaacata
    18721 acttccgtcg accataatat gtcctgatga tgtagtccgg gaacgaaagt aatattgtta
    18781 tcggtaatta acgcacgtcg ataaacgccc atccagacaa catgcgtcca gcgtcgcgag
    18841 gccaatgcca tacgcaacca atccggtccg cttaataccc cggtggaacg cagacgatcg
    18901 gtcggaatag attgccaggc gtgcccggtt tttcggacgc accagtccgc attacactgc
    18961 gcaacgtcca gatcatcgtt aagcgccata gtcatcagcg tttcatacat cttcgggtag
    19021 accaggtcat ccgcatcgac aaaggcgaca taatctccgg tcgccgcttg caaaccaaga
    19081 ttacgggcga cagatgcgcc agcattggcc tgatgaagca gtcgaacgtg cgggtaatgt
    19141 tccgcgtaat gttttgctat ctcaatggaa tgatctgtcg atccatcatt cacaataata
    19201 atttccagcg ccgaccacgt ttgcgcgatt aacgacgcca tgcaagcatt aaaatccgct
    19261 cccgcattat ataacgggat aatgatactc actttggttt tactattttt cataacgatt
    19321 accagaaaaa ccttaattta ccctgccttt atactgtggc tctattaaga aactattaag
    19381 ccgccataat taatttttac agtaaaaagc aagcacaaaa ctcagagtag ggcgtgacgt
    19441 tagcgagtaa aataagatta aagcgcaatt acgaatgctt gatgtctatg acaattcttt
    19501 acagctttcc agattttccc taacaaaaaa ggttggcgaa tgacaccaac cttttacgat
    19561 gaaacgtata tcagacccga taaatatcat tgggtctcta tacccttcat acttcaagtt
    19621 gcttatgtgt tggctacgga ttactcggcc catctatggg cctcgccctg acgggccgtc
    19681 gcacgcgacg ttcaaatctg ctcccggcag atttgtcgtt caccccagtc acatagttat
    19741 ctatgctcct ggggactcac tcccttgccg cctttaagca actcgaatta ttttgggtat
    19801 atacatatta atcccagctc agaatgactt ttcctgactg gcctgaacac atggcgtcaa
    19861 aacctttctg aaaatcatca acagagaaac gatgggtgat aatcggtgac agatccagac
    19921 cggactggat cagcgccgcc attttgtacc acgtttcgaa catctcacga ccataaatac
    19981 ctttaatgaa caagccttta aagatgactt ttgtccagtc gatagacata tctgatggcg
    20041 gaatccccag catcgcaata cgaccgccgt gattcatggt gtccagcatg gtacgaaacg
    20101 ccggcggcgc gccggacatc tccagaccca catcaaaccc ttcggtcatt cccagctccg
    20161 ccatgacgtc gttcaggctc tctttcgcga cgttgaccgc gcgggtgacg cccattttgc
    20221 gcgccagctc cagacggtat tcattgacgt cagtaatcac cacatgacgc gcgccgacat
    20281 gtttcgccac cgcggcggcc attacgccga ttggccccgc ccccgatacc agtacatctt
    20341 cgccgaccag atcgaaagac agcgccgtat gcaccgcatt accaaacggg tcgaaaatag
    20401 aggctaaatc atcagaaatg ttatccggga ttttaaacgc attgaatgcc gggatgacca
    20461 ggtattccgc gaagcagccg ggacggttga cgcccacgcc ggtggtgttg cgacacaggt
    20521 gagtacgacc gccacggcag ttgcggcaat gaccgcaagt gatgtgacct tcgccggaga
    20581 cgcgatcgcc gattttaaag cctttcactt cctgaccgat gccgaccact tcgccgacat
    20641 attcatgccc cacgaccatc ggaaccggga tggttttttg cgaccattca tcccagttat
    20701 agatgtgaac gtcagtgccg cagatggctg ttttacggat tttaatcagc aaatcgttat
    20761 ggccgacttc cggttccgga acgtcggtca tccagatgcc ctcttccgct ttcagtttgg
    20821 ataacgcttt catcttacat cctcaggcaa tcacgcccag ttgtttacca atacgcgtga
    20881 acgcgtctac cgcacgcgta atttgctcag gcgtatgcgc cgcagacatc tgggtacgaa
    20941 tacgcgcctg accttttggt acgaccggat agaagaaacc ggtaacgtaa atgccctctt
    21001 tttgcagttc gcgggcaaat ttctgcgcga caaccgcatc tcccagcatt accgggatga
    21061 tggcgtgatc cgcgcctgcc agcgtaaatc ccgcggcaga catctgctca cggaactgcc
    21121 gggcgttcgc ccacaagcga tcgcgcagtt ctgcgcccgc ttccaccatc tccaacactt
    21181 taatagaagc cgccacgatt gccggcgcca gggagttgga gaacagatat gggcgggaac
    21241 gctgacgcaa ccactcaacg acctctttac gcgccgcggt atagccgccg gatgcgccgc
    21301 ctaacgcttt gcccagcgta ccggtaataa tatctacgcg gcccattacg tcgcagtatt
    21361 catgggaacc gcgaccgttt tcgccgacaa agcctaccgc gtgagaatca tcaaccatca
    21421 ccagcgcatc gtatttatcg gccagatcac agacgccttt cagattggcg atgacgccat
    21481 ccattgagaa caccccgtcg gtggcgatca ggacatgacg cgcgccggct tcacgcgcct
    21541 ctttcagccg agcttccagc tctaccatat cgttgttggc atagcgatag cgcttcgctt
    21601 tacacaaacg cacgccgtca atgatagacg cgtggttcag cgcgtcggaa ataatagcgt
    21661 cttccgcgcc cagcaacgtc tcaaacaagc cgccgttagc gtcgaaacag gaggaataca
    21721 gaatcgcatc ttccatgccg aggaagcttg ccagcttttg ctccagcgct ttgtggctgt
    21781 cctgggtgcc gcagataaaa cgcacggacg ccataccgaa accgtggctg tccatgcccg
    21841 cttttgcggc attaatcagc tcagggtgat tcgccagccc gagatagtta ttggcgcaaa
    21901 agttaataac gtggcttcca tccgccacgg tgatatccgc ctgctgcgca gacgtaataa
    21961 tgcgctcttc tttaaacaat ccttccgccc gggcggtttc cagatcgttg gttaactgtt
    22021 tgtaaaaatc cccacgcatt gcgattctcc agactgggca aatttcagca catattaccc
    22081 aaagctatac ggtgatacga gatgacgcgt catcacttct ttaaaatgca gcataaatca
    22141 cgcgtatcct cacgagttat cagtgaatgg atgaatagtg atatgataaa agcattcatg
    22201 tctgagacag tctctgacac cataattcaa aggttacagt tatgatcatc gttaccggcg
    22261 gcgcgggctt tatcggcagc aatatcgtta aggccctgaa tgataaaggt atcaccgata
    22321 ttctggtggt ggataacctg aaagacggca ccaagtttgt aaacctggtg gatctgaaca
    22381 ttgctgacta tatggataag gaagatttcc tgatccagat tatgtccgga gaagagctcg
    22441 gcgatatcga agctattttc catgaaggcg cctgctcttc caccaccgag tgggacggca
    22501 agtatatgat ggataataac tatcaatact ccaaagagct gctgcactat tgtcttgagc
    22561 gcgaaatccc gttcctctac gcctcttctg ccgccaccta tggcggtcgc acgtctgatt
    22621 tcatcgaatc gcgtgaatac gaaaaaccgc ttaacgttta cggctattct aaattcctgt
    22681 ttgatgaata cgtgcgccag atcctgccag aagcgaactc gcagattgtc ggtttccgct
    22741 atttcaacgt ctatggacca cgtgaaggcc ataaaggcag catggcaagc gtggcatttc
    22801 atctgaatac acagttaaac aacggcgaaa gtccgaaact gtttgaaggc agcgaaaact
    22861 tcaagcgcga cttcgtttac gtgggcgatg tggccgccgt taacctgtgg ttcctggaaa
    22921 gcggcaagtc cggcatcttt aacctgggca caggccgcgc ggaatctttc caggccgtcg
    22981 ccgacgcgac gctggcatac cataaaaaag gcagcattga atacattccg ttcccggata
    23041 agctgaaagg tcgctatcag gcgtttacgc aggcggattt aaccaatctg cgcaacgcgg
    23101 gctacgacaa accctttaag accgtcgccg aaggcgtcac ggagtatatg gcctggctga
    23161 accgcgacgc gtaagtatga aaattttggt cattggcccg tcctgggtgg gcgacatgat
    23221 gatgtcgcaa agtctctatc gcacgcttaa agcgcgctat ccccaggcga taatcgacgt
    23281 gatggcgcca gcctggtgcc gtccgttgtt atcgcgtatg ccggaagtta acgaggcgat
    23341 acccatgccg ctgggccacg gcgcgctgga aatcggcgag cgccgcagat tgggccatag
    23401 cctgcgagag aggcgctacg atcgcgcctg ggtgctgcca aattcgttta aatcggcgct
    23461 gattcctttc tttgccaata tcccgcaccg taccggctgg cgtggcgaaa tgcgctatgg
    23521 cctgctgaac gatgcgcgcg tccttgataa agacgcctgg ccgctgatgg tggagcgcta
    23581 cgtggcgctg gcctatgaca agggcgtgat gcgcacggcg aaagatctgc cgcagccgct
    23641 gctctggcca cagctccagg ttagcgaggg tgaaaaatcg ctgatgtaca gcgatttttc
    23701 gctatcttct gaacgtcctc taatcggctt ttgccccgga gcagaatttg gcccggcaaa
    23761 acgttggccg cactatcact acgccgaact ggcaaagcag ctcattaacg aagggtatca
    23821 ggtcgtgctg tttggctcgg caaaagacca tgaagccgga aatgagatcc tggcggcgct
    23881 gaatagcgag caacaggcat ggtgtcgcaa cctggcaggg gaaacccagc tggaacaggc
    23941 cgtcattctg atagccgcct gtaaagccat cgtcactaac gattccgggc tgatgcacgt
    24001 cgcggcggcg ctcgaccgcc cgctggtcgc gttgtatggc ccaagtagcc cggatttcac
    24061 gccgccgctg tctcataagg cccgggtgat tcgtctcatt acgggttacc acaaagtgcg
    24121 taaaggcgat acggcgcaag gctatcacca gagcctgatc gatatcacgc cgcagcgggt
    24181 tctggaagag cttcattcgc tgttgtcgga agagggcgtt taatgcgagt tttgatcgtt
    24241 aaaacatcat cgatgggcga cgtattacat accctgcctg cgcttaccga cgcgcaacag
    24301 gcgattccgg ggattcaatt tgattgggtt gtcgaagaag ggtttgcaca aattccgtcc
    24361 tggcacagtg ctgtcgatcg cgtgattccc gtcgctattc gccgttggcg caaggcctgg
    24421 ttttccgcgc ccattaaagc ggaacgcata gcctttcatc gggcggtatg cgcataccaa
    24481 tacgacgctg tgattgatgc gcaggggctg gtaaaaagcg cggcgctggt gacgcgtctg
    24541 gcgcatggga taaagcacgg tatggactgg agtaccgccc gcgaaccgct ggccagcctg
    24601 ttttataacc gtaaacacca tatcgcaaag caacaacatg cggttgaacg gacgcgcgag
    24661 ctgttcgcca aaagcctggg atacgataaa ccgcagtcgc agggcgatta tgccatcgca
    24721 aaacattttc tgcattgcca gcaggcggtt agcgatccgt atgcggtgtt tttacatgcc
    24781 acgacccgcg atgataaaca ctggccggaa gcaaactggc gcgagcttat cggcctggtg
    24841 ggcaacaccg gattacggat aaaacttccc tggggcgcgc ctcatgagga ggctcgtgct
    24901 aaacgactgg ccgaaggctt tgactatgtg gatgtgttac cgcgcatgag cctggaggag
    24961 gtcgctagag tgctggctgg cgcaaaattt gtcgtatcgg ttgataccgg cctgagccat
    25021 ctcaccgccg cgctcgacag accgaatatt acgctatatg gcccaacgga ccctgggtta
    25081 attggaggtt atgggaagaa ccaaatggca tgctgctcac cagaacaaaa cctggcgaat
    25141 ttagatgcca caagcgtatt tggaaagatt cattaaagag actctgtctc atcccaaacc
    25201 tattgtggag aaaagatgct aaccacatca ttaacgttaa ataaagagaa atggaagccg
    25261 atctggaata aagcgctggt ttttcttttt gttgccacgt attttctgga tggtattacg
    25321 cgttataaac atttgataat catacttatg gttatcaccg cgatttatca ggtctcacgc
    25381 tcaccgaaaa gtttcccccc tcttttcaaa aatagcgtat tttatagcgc agcagtatta
    25441 tcattaatcc ttgtttattc catactcata tcgccagata tgaaagaaag tttcaaagaa
    25501 tttgaaaata cggtactgga gggtttctta ttatatactt tattaattcc cgtactatta
    25561 aaagatgaaa caaaagaaac gattgcgaaa atagtacttt tctccttttt aacaagttta
    25621 ggacttcgct gccttgcaga gagtattctg tatatcgagg actat
//
LOCUS       DAJVSD010000038        25322 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.038, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000038 DAJVSD010000000
VERSION     DAJVSD010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 25322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25322
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.038"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..187
                     /locus_tag="OQP62_001313"
     CDS             <1..187
                     /locus_tag="OQP62_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1016 domain-containing protein"
                     /protein_id="HCS1720908.1"
                     /translation="CAGKGAGEAHYALTGLPNTIMASEYKVQLPDEKLLTDELIRSQT
                     MLETQLTRGGSLTTEKN"
     gene            304..1557
                     /gene="codB"
                     /locus_tag="OQP62_001314"
     CDS             304..1557
                     /gene="codB"
                     /locus_tag="OQP62_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HCS1720909.1"
                     /translation="MSQDNNYSQGPVPQAARKGVIPLTFVMLGLTFFSASMWTGGTLG
                     TGLTYHDFFLAVFFGNLLLGIYTAFLGYIGAKTGLSTHLLARYSFGVKGSWLPSLLLG
                     STQVGWFGVGVAMFAIPVSKATGIDANILIAVSGLLMTLTIFFGISALTILSIVAVPA
                     IVILGSYSVWLAVSGVGGLEHLKTIVPQTPLDFSSALALVVGSFVSAGTLTADFVRFG
                     RHAKSAVLIAMVAFFLGNSLMFIFGAAGAAAVGQADISDVMIAQGLLLPAIVVLGLNI
                     WTTNDNALYASGLGFANITGLSSRTLSVVNGIIGTVCALWLYNNFVGWLTFLSSAIPP
                     IGGVIIADYLVNRRRYADFNTVRFIPVNWIAILSVALGIAAGHYVPGIVPVNAVLGGV
                     FSYILLNPLFNRSLAKSPEVSHAEQ"
     gene            1544..2824
                     /locus_tag="OQP62_001315"
     CDS             1544..2824
                     /locus_tag="OQP62_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine deaminase"
                     /protein_id="HCS1720910.1"
                     /translation="MQNNNITIRQTRLQGHEGLWQITIENGRFSRIEPQEATSLPQGE
                     VLDAEGGLAIPPFVEPHIHLDTTQTAGEPSWNQSGTLFEGIERWAERKAMLTHEDVKA
                     RAMQTLKWQMANGIQYVRTHVDVSDPTLTALKAMLEVKQEVAPWVDLQIVAFPQEGIL
                     SYPNGEALLEEAVRLGADVIGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEI
                     DDEQSRFVETVAALAHRDGMGARVTASHTTAMHSYNGAYASRLFRLLKMSGINFVANP
                     LVNIHLQGRFDTYPKRRGVTRVKEMLEAGINVCFGHDDVFDPWYPLGTANMLQVLHMG
                     LHVCQLMGYGQINDGLNLITTHSAKTLHLQDYGLSVGNAANLVILPAENGFDAVRRQT
                     PARYSIRHRRVIAETVPSQTTLHLTQPEAVTFKR"
     gene            complement(2906..3373)
                     /locus_tag="OQP62_001316"
     CDS             complement(2906..3373)
                     /locus_tag="OQP62_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HCS1720911.1"
                     /translation="MMMGEVQSLPSCGLHPRLLDALTLALAARPQEKAPGRYELQGDN
                     IFMNVMQLTTQMPAGKKAELHEQYIDIQLLLTGVERIAFGMSGAARQCEEMHVEEDYQ
                     LCSQIADEQTITLQAGMFAVFMPGEPHKPGCAVGEPDDIKKVVVKVRASLLAA"
     gene            complement(3370..4245)
                     /gene="nanK"
                     /locus_tag="OQP62_001317"
     CDS             complement(3370..4245)
                     /gene="nanK"
                     /locus_tag="OQP62_001317"
                     /EC_number="2.7.1.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine kinase"
                     /protein_id="HCS1720912.1"
                     /translation="MTTLAIDIGGTKLAAALIDNNLRISQRRELPTPASKTPDALREA
                     LKALVEPLRAEARQVAIASTGIIQEGMLLALNPHNLGGLLHFPLVQTLETIAGLPTLA
                     VNDAQAAAWAEYHALPDDIRDMVFITVSTGVGGGVVCDGKLLTGKGGLAGHLGHTLAD
                     PHGPVCGCGRVGCVEAIASGRGMAAAARDDLAGCDAKTLFIRAGEGHQQARHLVSQSA
                     QVIARMIADVKAITDCQCVVIGGSVGLAEGYLEQVRAFLMQEPEPYHVALSAARYRHD
                     AGLLGAALLAQGDTL"
     gene            complement(4242..4921)
                     /locus_tag="OQP62_001318"
                     /pseudo
     CDS             complement(4242..4921)
                     /locus_tag="OQP62_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462247.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
     gene            complement(4968..6458)
                     /gene="nanT"
                     /locus_tag="OQP62_001319"
     CDS             complement(4968..6458)
                     /gene="nanT"
                     /locus_tag="OQP62_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialic acid transporter NanT"
                     /protein_id="HCS1720913.1"
                     /translation="MSTSTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLT
                     EVQSEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVSSIILFSVGTLAC
                     GFAPGYTTMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVA
                     AQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILY
                     RGEHRIINILMTFAAAAALWFCFAGNLQNAAIVAGLGLLCAVIFISFMVQSSGKRWPT
                     GVMLMLVVLFAFLYSWPIQALLPTYLKTELAYDPHTVANVLFFSGFGAAVGCCVGGFL
                     GDWLGTRKAYVCSLLASQILIIPVFAIGGTNVWVLGLLLFFQQMLGQGIAGILPKLIG
                     GYFDTDQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLI
                     GLDMPSRVQRWLRPEALRTHDAIDDKPFSGAVPLGSGKGAFVKTKS"
     gene            complement(6574..7467)
                     /gene="nanA"
                     /locus_tag="OQP62_001320"
     CDS             complement(6574..7467)
                     /gene="nanA"
                     /locus_tag="OQP62_001320"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HCS1720914.1"
                     /translation="MAKALQGVMAALLTPFDHQQQLDSESLCRLVRFNIGQGIDGLYV
                     GGSTGEAFVQSLAEREQVLEIVAEEAKGKITLIAHVGTVSTAESQQLASAAKRYGFDA
                     VSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPG
                     VNALKQTSGDLFQMEQIRRAHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQ
                     GIVQALREGDVAKAQRLQTECNKVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFAP
                     VDEKYLPALKALAQQLMEEKA"
     gene            complement(7602..8393)
                     /gene="nanR"
                     /locus_tag="OQP62_001321"
     CDS             complement(7602..8393)
                     /gene="nanR"
                     /locus_tag="OQP62_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NanR"
                     /protein_id="HCS1720915.1"
                     /translation="MDVMNAFDSQAEDSPTSLGRSLRRRPLARKKLSEMVEEELEQMI
                     RRHEFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADT
                     IISELSGMAKDFLTHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIALLTKALEINSQ
                     SLDDNALFIRSDVEFHRVLAEIPGNPIFMAIHVALLDWLIAARPSVPDRELHEHNNVS
                     YQQHIVIVDAIRQRDPDKADRALQTHLNSVSATWHALGKKSQKMR"
     gene            complement(8502..9002)
                     /gene="sspB"
                     /locus_tag="OQP62_001322"
     CDS             complement(8502..9002)
                     /gene="sspB"
                     /locus_tag="OQP62_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HCS1720916.1"
                     /translation="MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVMLPGVHVPME
                     YARDGQIVLNIAPRAVGNLELSNDEVRFNARFGGVPRQVSVPLAAVLAIYARENGAGT
                     MFEPEAAYDEDVVSLNDDDNTAGAESETVMSVIDGDKPDHDDDSSPDDEPPPPRGGRP
                     ALRVVK"
     gene            complement(9008..9646)
                     /gene="sspA"
                     /locus_tag="OQP62_001323"
     CDS             complement(9008..9646)
                     /gene="sspA"
                     /locus_tag="OQP62_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000257299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stringent starvation protein A"
                     /protein_id="HCS1720917.1"
                     /translation="MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKD
                     NPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLY
                     MHRIEKDWYTLMNVIVNGSASEVDSARKQLREELLAIAPVFGQKPYFLSDEFSLVDCY
                     LAPLLWRLPQLGIEFSGAGAKELKGYMTRVFERDSFLASLTEAEREMRLGRG"
     gene            9761..9934
                     /locus_tag="OQP62_001324"
     CDS             9761..9934
                     /locus_tag="OQP62_001324"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720918.1"
                     /translation="MNIPRYLGRKLDDSLPDFVTFVVSRFWNWGKRDNNPHFIVTDKC
                     IAHKKTRQSGFFR"
     gene            complement(9961..10353)
                     /gene="rpsI"
                     /locus_tag="OQP62_001325"
     CDS             complement(9961..10353)
                     /gene="rpsI"
                     /locus_tag="OQP62_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000829824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HCS1720919.1"
                     /translation="MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETA
                     RMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRGELRKAG
                     FVTRDARQVERKKVGLRKARRRPQFSKR"
     gene            complement(10369..10797)
                     /gene="rplM"
                     /locus_tag="OQP62_001326"
     CDS             complement(10369..10797)
                     /gene="rplM"
                     /locus_tag="OQP62_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HCS1720920.1"
                     /translation="MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEY
                     TPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIE
                     IAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI"
     gene            complement(11098..12222)
                     /locus_tag="OQP62_001327"
     CDS             complement(11098..12222)
                     /locus_tag="OQP62_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AFG1 family ATPase"
                     /protein_id="HCS1720921.1"
                     /translation="MQSLSPTSRYLQALNEGTHQPDDVQKEAVDRLETLYQALTAKKS
                     SATPPGGLIARLGKLLGKNEPDAQIPVRGLYMWGGVGRGKTWLMDLFYHSLPGERKLR
                     LHFHRFMLRVHEELTALQGQIDPLDIIADRFKTETDVLCFDEFFVTDITDAMLLGGLM
                     KALFARGITLVATSNIPPEELYRNGLQRARFLPAIDAIKQHCDIMNVDAGVDYRLRTL
                     TQAHLWLTPLNDETRRQMDKLWLALAGAAREHAPTLEINHRPLSTLGVENQTLAASFA
                     TLCVEARSQHDYIALSRLFHTVLLFDVPVMTPLMENEARRFIALVDEFYERHVKLVVS
                     AAAPLYEIYQGERLKFEFQRCLSRLQEMQSAEYLKREHMP"
     gene            12415..12813
                     /locus_tag="OQP62_001328"
     CDS             12415..12813
                     /locus_tag="OQP62_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1043 family protein"
                     /protein_id="HCS1720922.1"
                     /translation="MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAE
                     LEEYREELVSHFARSAELLDTMAHDYRQLYQYMAKSSSSLLPEMSAESNPFRNRLAES
                     EASNDQAPVQMPRDYSEGASGLLRSGAKRD"
     gene            12970..14337
                     /gene="degQ"
                     /locus_tag="OQP62_001329"
     CDS             12970..14337
                     /gene="degQ"
                     /locus_tag="OQP62_001329"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endoprotease DegQ"
                     /protein_id="HCS1720923.1"
                     /translation="MKKHTQLLSALALSVGLTLSAPFPALASIPGQVPGQATLPSLAP
                     MLEKVLPAVVSVKVEGTATQSQKVPEEFKKFFGEDLPDQPSQPFEGLGSGVIIDAAKG
                     YVLTNNHVINQAQKISIQLNDGREFDAKLIGGDDQSDIALLQIQNPSKLTQIAIADSD
                     KLRVGDFAVAVGNPFGLGQTATSGIISALGRSGLNLEGLENFIQTDASINRGNSGGAL
                     LNLNGELIGINTAILAPGGGSIGIGFAIPSNMAQTLAQQLIQFGEIKRGLLGIKGTEM
                     TADIAKAFKLNVQRGAFVSEVLPNSGSAKAGVKSGDVIISLNGKPLNSFAELRSRIAT
                     TEPGTKVKLGLLRDGKPLEVEVTLDSNTSSSASAEMIAPALQGATLSDGQLKDGTKGV
                     KVDSVEKSSPAAQAGLQKDDVIIGVNRDRISSIAEMRKVMAAKPSIIALQVVRGNENI
                     YLLLR"
     gene            14430..15500
                     /gene="degS"
                     /locus_tag="OQP62_001330"
     CDS             14430..15500
                     /gene="degS"
                     /locus_tag="OQP62_001330"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane-stress sensor serine
                     endopeptidase DegS"
                     /protein_id="HCS1720924.1"
                     /translation="MFVKLLRSVAIGLIVGAILLAVMPSLRKINPIAVPQFDSTDETP
                     ASYNFAVRRAAPAVVNVYNRSMNSTAHNQLEIRTLGSGVIMDQRGYIITNKHVINDAD
                     QIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINTKRTPHIGDVVLAIGN
                     PYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTL
                     SFDKSNDGETPEGLGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQQGSG
                     MDPIQGIVVNEVTPNGPAALAGIQVNDLIISVNNKPAVSALETMDQVAEIRPGSVIPV
                     VVMRDDKQLTFQVTVQEYPASN"
     gene            complement(15534..16265)
                     /locus_tag="OQP62_001331"
     CDS             complement(15534..16265)
                     /locus_tag="OQP62_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triphosphoribosyl-dephospho-CoA synthase"
                     /protein_id="HCS1720925.1"
                     /translation="MIMLPQNEDTVMSEMVAFRQGTSMPSRETILRYVVETVNQITEL
                     EPALHLLPWSGVNSAIYEQRFAQCYDEGLCAAQTSAPNVPQGILPSTDWAQGIGLLCF
                     AAGYMSAGERPLTHNRLCDFVKQAAVGLSPIEGEAASGFSTVRSIALPVFRRLQRDGH
                     ASRVLLLQTLLHLVAWKSASQYARQQAQRLLWMGGILGEGSESGLLTLDKALREEAVG
                     EKSFPALLIFTSFLAHFPAGPVFID"
     gene            complement(16286..17587)
                     /locus_tag="OQP62_001332"
     CDS             complement(16286..17587)
                     /locus_tag="OQP62_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxalacetate decarboxylase subunit beta"
                     /protein_id="HCS1720926.1"
                     /translation="MESLNALLQGMGLMHLGAGQAIMLLVSLLLLWLAIAKKFEPLLL
                     LPIGFGGLLSNIPEAGMALTALESLLAHHDAGQLAVIAAKLNCAPDVHAIKEALALAL
                     PSVQNQMENLAVDMGYTPGVLALFYKVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTL
                     LLGAAAQFGIFATVLGALTLNYFGLIAFTLPQAAAIGIIGGADGPTAIYLSGKLAPEL
                     LGAIAVAAYSYMALVPLIQPPIMRALTSEKERKIRMVQLRTVSKREKILFPVVLLLLV
                     ALLLPDAAPLLGMFCFGNLMRESGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKF
                     LQPQTLGILLLGVIAFGIGTAAGVLMAKLLNLCSKNKINPLIGSAGVSAVPMAARVSN
                     KVGLESNPQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM"
     gene            complement(17600..19375)
                     /gene="oadA"
                     /locus_tag="OQP62_001333"
     CDS             complement(17600..19375)
                     /gene="oadA"
                     /locus_tag="OQP62_001333"
                     /EC_number="7.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-extruding oxaloacetate decarboxylase
                     subunit alpha"
                     /protein_id="HCS1720927.1"
                     /translation="MTIAITDVVLRDAHQSLFATRLRLDDMLPIAAQLDDVGYGSLEC
                     WGGATFDACIRFLGEDPWLRLRELKKAMPKTPLQMLLRGQNLLGYRHYADDVVERFVE
                     RAVKNGMDVFRVFDAMNDPRNMKAALQAVRSHGAHAQGTLSYTTSPAHTLQTWLDLTE
                     QLLETGVDSIAIKDMSGILTPMAAFELVSEIKKRFEVRLHLHCHATTGMAEMALLKAI
                     EAGVDGVDTAISSMSATYGHPATEALVATLAGTEHDTGLDILKLENIAAYFREVRKKY
                     HAFEGQLKGYDSRILVAQVPGGMLTNLESQLKQQNAADRLDQVLAEIPRVREDLGFIP
                     LVTPTSQIVGTQAVLNVLTGERYKTIAKETAGILKGEYGHTPVPVNAALQARVLEGSA
                     PVTCRPADLLKPELAELEADVRRQAQEKGITLAGNAIDDVLTVALFPQIGLKFLENRH
                     NPAAFEPLPQAEAAQPVAKAEKPAASGIYTVEVEGKAFVVRVSDGGDISQLTTAVPAA
                     SSAPVQAAAPAGAGTPVTAPLAGNIWKVIATEGQSVAEGDVLLILEAMKMETEIRAAQ
                     AGTVRGIAVKSGDAVSVGDTLMTLA"
     gene            complement(19391..19633)
                     /locus_tag="OQP62_001334"
     CDS             complement(19391..19633)
                     /locus_tag="OQP62_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxaloacetate decarboxylase subunit gamma"
                     /protein_id="HCS1720928.1"
                     /translation="MTNAALLLGEGFTLMLLGMGFVLAFLFLLIFAIRGMSAVITRFF
                     PEPVAAPAPRAVPAVDDFTRLKPVIAAAIHHHRLNA"
     gene            complement(19789..20406)
                     /gene="ttdB"
                     /locus_tag="OQP62_001335"
     CDS             complement(19789..20406)
                     /gene="ttdB"
                     /locus_tag="OQP62_001335"
                     /EC_number="4.2.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L(+)-tartrate dehydratase subunit beta"
                     /protein_id="HCS1720929.1"
                     /translation="MTKKILTTPIKDEDLADIKAGDIIYLNGHIVTCRDVAHRRLIEG
                     GRELPVDVRGGAILHAGPIVRPIKGEDDKFEMVSVGPTTSMRMEKFEKEFIAQTGVKL
                     IVGKGGMGKGTEEGCAEHKALHCVFPAGCAVVAAVCVEEIEDAQWRDLGMPETLWVCR
                     VKEFGPLIVSIDTHGNNLFEQNKIIFNQRKEIVADEICQNVSFIK"
     gene            complement(20406..21305)
                     /gene="ttdA"
                     /locus_tag="OQP62_001336"
     CDS             complement(20406..21305)
                     /gene="ttdA"
                     /locus_tag="OQP62_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L(+)-tartrate dehydratase subunit alpha"
                     /protein_id="HCS1720930.1"
                     /translation="MSKSEQISHMTDVMAKFVGYTGKVLPDDVTAKLEDLHKKETSKL
                     ADVIFTTMIENQRLAKELDRPSCQDTGVIQFLVECGTNFPLIGELEALLREAVIKATV
                     DSPLRHNSVETFDEYNTGKNVGKGTPTVFWEIVPNSDQCSIYTYMAGGGCSLPGKAMV
                     LMPGAGYEGVTRFVLDVMTSYGLNACPPLLVGVGVATSVETAALLSKKALMRPIGSHN
                     ENERAASLEKMLEDGINKIGLGPQGMSGNTSVMGVNIENTARHPSTIGVAVNVGCWSH
                     RKGHIVFDKDLNYTITSHSGVNF"
     gene            complement(21338..22606)
                     /locus_tag="OQP62_001337"
     CDS             complement(21338..22606)
                     /locus_tag="OQP62_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13/DASS family transporter"
                     /protein_id="HCS1720931.1"
                     /translation="MEPITLTLCLLVFAIVMFVWEKVPLAVTSMIVCVALVITGVLNI
                     KQAFAGFIDTNVILFVAMFIVGGALFETGMANKVGGVITRFAKTEKQLIFTIMVVVGL
                     MSGVLSNTGTAAVLIPVVIGVAAKSGFSRSRLLMPLVFAAALGGNLSLIGAPGNLIAQ
                     SALQNIGGGFGFFEYAKIGLPMLICGILYFLTIGYRFLPNNATGGEVGSVGEQRDYSH
                     VPQWKQRLSLVVLIATILGMIFEKKIGVSLAVTGCIGALVLVVSGVLTEKQAYKAIDS
                     QTIFIFGGTLALAKALEMTGAGKLVADYVIGMLGQNSSPFMLLIAVFALSVVMTNFMS
                     NTATTALLVPVSLSIAAGMGADPRAVLMATVIGGSCAYATPIGMPANMMVLSAGGYKF
                     VDYAKAGIPLIIVSTIVSLILLPILFPFHP"
     gene            complement(22817..23482)
                     /locus_tag="OQP62_001338"
     CDS             complement(22817..23482)
                     /locus_tag="OQP62_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1720932.1"
                     /translation="MQRPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIAG
                     MVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGINEQTIREHYEIRALLESEAVAKA
                     SRPGTDISRIAEVHYAAEKALAENNSAEYSDLNQAFHMEIWNVAGNEKMKMLLCNMWN
                     GLSMGHKVTEEEYAVISIQEHKSILQALELHDETLARQRMREHIIRSMENMLTRYVGD
                     PSA"
     gene            complement(23469..24098)
                     /locus_tag="OQP62_001339"
     CDS             complement(23469..24098)
                     /locus_tag="OQP62_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1720933.1"
                     /translation="MKKIQRTQTRDHITQMLRYEILSGNIKAGEELAQESIAEQLGLS
                     RMPVREALQSLEQEGFLIRLPNRHMQVAHLEADRVSHIFRVIAAMAAEMFSLIPSEVG
                     DALLIRAQALAVAEDKSCELECHAMLISYVNNRYLEKVYQQFLDGYVSYVILHLKKDN
                     QESAQLFAELADVIRQGRRDEIGQVMQRYFLSLAEIMRQHMKDWESAEA"
     gene            complement(24218..25156)
                     /gene="mdh"
                     /locus_tag="OQP62_001340"
     CDS             complement(24218..25156)
                     /gene="mdh"
                     /locus_tag="OQP62_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000861594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HCS1720934.1"
                     /translation="MKVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAV
                     DLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV
                     QQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAE
                     LKGKLPTEVEVPVIGGHSGVTILPLLSQIPGVSFTEQEAAELTKRIQNAGTEVVEAKA
                     GGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVE
                     ERKSIGTLSTFEQHSLDAMLDTLKKDIQLGEDFINK"
BASE COUNT         5906 a         7176 c         6591 g         5649 t
ORIGIN      
        1 gtgcgcaggg aaaggcgcgg gggaagcgca ttacgcgctg actggcctgc caaacaccat
       61 catggcgagc gagtacaaag tgcagttgcc cgacgaaaaa ttactcacag acgaacttat
      121 tcgttcgcaa accatgctgg aaactcaact cacacgcggt ggttcactga caacggagaa
      181 aaactagcga accattaatg ccatgaataa ttatcaaaaa aaatatcaca cgaaaacgtt
      241 tgctttattc tgagaactgt atattatgcg gcggattttt tgggcaaaat tcatggaggc
      301 gttgtgtcgc aggacaacaa ttatagccag gggccagttc cccaggcggc gcggaagggc
      361 gtgattccac tgacgtttgt catgttgggt ttaacgtttt tttccgccag tatgtggacc
      421 ggagggacac tcggcaccgg tcttacctat catgatttct tcctcgcagt tttcttcggt
      481 aatctcctcc tcggtatcta cactgcattt cttggctaca tcggcgcaaa aaccggactc
      541 tccacccacc tccttgcacg ttactccttt ggcgttaaag gctcatggct tccctcgctg
      601 ctgttaggca gtactcaagt gggctggttt ggcgttggcg tagcgatgtt cgctattccg
      661 gtcagtaaag cgacgggcat tgatgccaat atcctgattg ccgtttcggg tctgctgatg
      721 accctgacca tttttttcgg catctcggcg ttgaccattt tgtctatcgt tgccgtaccc
      781 gcgatcgtta ttctgggcag ctactccgtc tggctggcgg tcagcggcgt gggtgggctg
      841 gagcatttaa aaacgatagt gccgcagacg ccgctggatt tttccagcgc gctggcgctg
      901 gtggtgggct cgtttgtcag cgccggtaca ttgaccgccg acttcgtccg cttcggacgt
      961 catgccaaaa gcgccgtact gattgcgatg gtcgcttttt tcctcggtaa ctcgctgatg
     1021 tttatcttcg gcgcggcagg cgctgccgcc gtcggtcagg cggatatctc tgacgtgatg
     1081 atagcgcagg ggctgctgct gcccgcgatt gtggtgcttg gcctgaatat ctggaccacc
     1141 aacgataacg cgctgtacgc atcgggtctg ggcttcgcca atattaccgg tctttccagc
     1201 cgcacgctgt cggtggtgaa cgggattatc ggtaccgtgt gcgcgctgtg gctttacaat
     1261 aattttgtcg gctggctgac gttcctgtca tctgccatcc caccgattgg tggagtgatt
     1321 attgccgact atctggtgaa ccgccgccgc tatgccgact tcaacaccgt gcgctttatt
     1381 cccgttaact ggattgctat tctttccgtc gcgctgggca tcgccgccgg acattatgtt
     1441 cctggtattg tgcccgtcaa cgccgtactc ggcggcgtct tcagctatat cctgctgaat
     1501 ccacttttca accgcagcct tgctaaatca ccagaggtca gccatgcaga acaataacat
     1561 cactattcgt cagacgcgtc tgcagggaca cgaaggatta tggcagatta cgattgaaaa
     1621 cgggcgcttt agccggattg agcctcagga agccacatcg ttaccgcagg gcgaagtgct
     1681 tgatgccgaa ggcggtctgg ctattccacc gtttgttgag ccacatatcc acctggatac
     1741 cacgcaaacg gcgggtgaac cgagctggaa ccagtccggc acactgtttg aagggattga
     1801 gcgctgggca gaacgtaaag caatgctcac gcatgaagat gtgaaagcgc gcgcgatgca
     1861 gaccctgaaa tggcagatgg ctaacggcat ccagtacgtt cgtactcacg ttgacgtttc
     1921 agatcctacg ctcaccgcgc tgaaagccat gctggaagtg aagcaagagg ttgcgccgtg
     1981 ggtagaccta caaatcgtcg cctttccgca agaaggtatt ctgtcttatc ccaacggtga
     2041 agcgctgtta gaggaagccg tgcgtttggg cgctgacgtt attggcgcca ttccgcactt
     2101 tgagttcacg cgggaatatg gcgttgaatc gctgcacaaa accttcgccc tggcgcaaaa
     2161 atacgatcgc ttgatcgatg tgcactgcga cgaaattgat gacgagcagt ctcgctttgt
     2221 cgaaacggtc gcggcgctgg cgcatcgtga tggcatgggg gcgcgcgtga ccgccagcca
     2281 caccacggct atgcactcgt acaacggcgc gtatgcgtca cgcctgttcc gtctgttgaa
     2341 aatgtcgggg attaacttcg tcgccaaccc gctggtaaat attcatctgc aagggcggtt
     2401 tgacacttac ccgaaacgtc gtggcgtcac gcgagtgaaa gagatgctgg aagcggggat
     2461 caacgtctgc tttggccatg atgacgtctt cgacccgtgg tatccattag gcaccgccaa
     2521 tatgctgcag gtgctgcata tggggttaca cgtttgccag ttgatggggt atgggcaaat
     2581 caacgacggg ttaaatctga tcactaccca cagcgcaaaa actttgcacc tgcaggacta
     2641 cggtctgagc gtcggcaatg ccgcgaatct ggttatctta cccgctgaga atggattcga
     2701 tgcggtacgt cgccagacgc ctgcccgtta ctcaattcgc cacaggcggg tgattgccga
     2761 gacggtgccg agccagacga cgctgcacct gacccagccg gaagccgtga cgtttaagcg
     2821 ttaacccgtc atacccgcgc tctccggcac attcaccacg cagcccgtaa ggggctgcgt
     2881 tcggaagact gctccggcaa gagattcagg ccgccagcaa actggcgcgt actttcacta
     2941 ccactttctt gatgtcatcc ggttcaccca ctgcacatcc cggtttatgc ggttctcccg
     3001 gcataaacac agcaaacatc cccgcttgca gcgtaatagt ctgctcgtcg gcaatttgac
     3061 tacaaagctg gtaatcctct tcaacgtgca tctcctcgca ctggcgagcg gcaccggaca
     3121 tcccaaacgc aatacgctcg acgccggtta gtagtagctg aatatcaatg tattgttcat
     3181 gcaattccgc tttcttcccg gcaggcattt gcgtcgttaa ctgcattaca ttcataaaga
     3241 tattgtcgcc ctgcaattca tagcgccccg gtgctttctc ctgcggcctt gccgccagcg
     3301 cgagagtcaa ggcatccagc agtcgcggat gcaacccgca agaaggcaac gactgtactt
     3361 cccccatcat cataatgtgt ctccttgagc taacaaagca gcgcctaata atcctgcgtc
     3421 atgccgatag cgagcggcgc tcagcgccac gtgataaggc tcaggctctt gcatcaaaaa
     3481 cgcgcgaacc tgctccaggt atccctcagc taaccctacg ctgccgccaa tgaccacaca
     3541 ctggcagtcg gtaatcgctt tcacatcggc gatcattcgc gctattacct gcgcggattg
     3601 gcttaccaga tgtcgcgcct gctgatgacc ttcgccagcg cgaataaata gggttttggc
     3661 gtcgcatccc gccagatcgt cccgcgccgc cgcggccatc cctcgtccgg aggcgatggc
     3721 ctctacacaa ccaacgcgtc cacagccgca tacgggcccg tgtgggtccg ccagggtgtg
     3781 tcccaggtgc ccggccagac cgccttttcc ggtaaggagc ttgccgtcgc agacaacgcc
     3841 gccgccaacg ccggttgaaa cggtgataaa taccatatcg cggatatcat cagggagcgc
     3901 gtgatactcc gcccaggccg ccgcctgcgc gtcgttcacc gccagcgtcg gcaggccagc
     3961 gatcgtttcc agtgtttgta ctaacggaaa gtgtagcaag ccgcccagat tatgggggtt
     4021 tagcgccagc agcatccctt cctgaatgat cccggtagaa gctatcgcta cctgacgcgc
     4081 ctctgcccgt agtggttcaa ccagcgcctt taatgcttca cgtaacgcat ccggcgtttt
     4141 gctcgcgggg gtcggtagct cgcgacgctg gctaatgcgc aagttgttgt cgatgagcgc
     4201 ggcggcaagt ttagtaccgc caatatcgat tgctaacgta gtcatgacgc cgcctttttt
     4261 aatgcgtcgt tataccatcc acagatatgt tccagacggg taatggcgga ccccaccgtc
     4321 accgcccatg cgccatagcg gatcgcctcc gccgccagtg ctggcgagtt atagcgccct
     4381 tcggctatta cccggcatcc ggcgtcatgc aacgctttga ctaagggcag atcgggttcc
     4441 tccggcgtat cgggggtggt gtagccggac attgtcgtgc cgataatgtc cgcgcccaac
     4501 cgttggcagg cgagaccatc gtccacggat gagcagtcgg ccatcgccag tagatggtgg
     4561 tgatgaatgc gcgccaacaa cgcctcaacg gctaccggcc gttgccgagc ggttccatca
     4621 acggcgataa tagctgcgcc agcgcatcta catcgtcgag aaaaggggta atgcgcactg
     4681 gagagtcgtc cagatcgcgt ttgataatgc cgataatggg taccgaaacg agcgaacggg
     4741 ccacgcgcag gttgtctatg ccttcaatac gcaccgcaac cgcgcccgcc tgttccgccg
     4801 ccaacgccat tgccgctaca atctccggct tatccagcgg actgcccgga acgggctggc
     4861 aggagacaat caggccgcca gaagcggcaa tatttttatc cagttgttca agtaacgaca
     4921 tactactccc ttacaaatat tgcccggttg aaaaccgggc aagcggatta acttttcgtt
     4981 tttacaaagg cacctttacc actgccaagc ggtacggctc cgctgaacgg tttgtcgtcg
     5041 atagcatcat gggtgcgtaa cgcttccgga cgtagccaac gctgtacgcg agacggcata
     5101 tcaagcccaa taagcaggat cacgacaaac gtcaggctga aagagagcga tgccagcgca
     5161 gtgcccagat ccagacgttg agcgatcagc gctcccagga tcggtgccag cgcgccgccg
     5221 agcgcgccga cgttataagt aaagcccagc cccgccgcgc gctgatcggt atcgaagtaa
     5281 ccgccgatca gtttcggcag aatcccggca atcccctgcc ccaacatctg ttggaaaaac
     5341 agtagcagac ccagaaccca gacgtttgtg ccgccaatcg caaagaccgg aataatgagg
     5401 atttgcgagg ccagcaggct acagacatat gctttacgcg ttcccagcca gtcgccaaga
     5461 aaaccgccta cgcaacaacc aaccgccgcg ccaaatccgc taaagaacag gacattcgcc
     5521 accgtatgcg gatcgtaggc cagctcggtt ttcagataag taggtaatag cgcctgaatc
     5581 ggccaagaat agaggaaagc aaacagtacc accagcatca gcatgacgcc agtgggccag
     5641 cgtttaccgc tgctctgcac cataaagctg ataaagataa ccgcgcacag tagtcccagc
     5701 cccgccacaa tcgcagcatt ttgtaggtta ccggcaaaac agaaccacag cgcagcggcg
     5761 gcggcgaagg tcattaaaat gttgatgata cgatgttcgc cccgataaag aatgtcgacc
     5821 atcgtgcgta ccggcgcttt acccgcgtgt ttttctttcc agtcttccgc ttccggaatg
     5881 tttttccgca gccagagggc gaagataatt ggcaaaatgc caatgaaaaa cagcgcgcgc
     5941 cagccccaga caggcaccac caggctgtac acctgcgcgg caacgaccgc gccgacggag
     6001 aagccggaaa tcagaaaacc actggcttta ttgcgtaaat gttttggcca gctttcaatc
     6061 acataggtcg cgctggaacc atattcgccc gccatgccca taccaatcac cagtcgggcg
     6121 atgaacatgg tggtgtaacc gggcgcaaac ccgcaggcca gggttcccac cgaaaacaga
     6181 atgatgctgc tgaccatcgc cagacgacgc ccatagcgat cgcccatcgc gcccagtaat
     6241 aacccgccga accagcgaga gataaaagcc gcagaaatca ggcttgccgc ctgtaccgtc
     6301 gtcagcccaa attcgctttg tacctcagtc agtacaagag caattaacac aaaatcaaaa
     6361 ccatcaagca gatatcccaa ccaggcagcg gaaaatgccc gccattgcgc ccggttgaga
     6421 tggcgatacc acgggatgtt ctgggtagaa gtactcattt tactctcccg acgatttttg
     6481 ttgtcgttat gccgaatggc ggctccgcct tatccggcct actgttcgca ctgttgtagg
     6541 ccgggcaagc gtagcgcccc cggcattatg ctgttacgcc ttttcttcca tcagttgttg
     6601 agccagcgcc ttgagcgccg gcagatattt ttcatcaaca ggcgcaaacg gtttacgaca
     6661 tagcggcacc gataccacgt ccatataatg caggaccgtt ttcaggccgc ggaatacgcc
     6721 ggttttaatc agtaaatcaa taaccttatt gcactcggtt tgcagacgct gcgctttcgc
     6781 cacatcgccc tcacgcaatg cctgaacaat cccctgataa cgccaaccca taatgttgta
     6841 tgtgctgccg ataccgccgt ccgcgcccgc cagcagaccg gaagcgaaga tttcgtcata
     6901 accgttgtac agcaccagat ccggatgcgc gcggcggatc tgctccatct ggaagagatc
     6961 gccggaggtt tgcttcagcg cgttcacgcc cggtaatgtc accagcgtat tgatctgatc
     7021 gagggtaagt tttacgccgc ttaacgccgg aatgttgtat accaccatcg gcaatccatc
     7081 tgcggaatca atgattgccc gataatggtc acagtgctct tcaaaactga aagggtaata
     7141 aaaaggcgtc accgcagaga ccgcatcaaa accgtaacgc tttgcggcgc tggcaagctg
     7201 ctggctttct gcggtgctta ctgtcccgac atgggcgatc aacgtgattt ttcccttcgc
     7261 ctcttcggcg acaatctcca gtacctgctc tctttcagca aggctctgta cgaatgcttc
     7321 cccggtggaa ccgccaacgt acagcccgtc gataccctgc ccgatgttaa aacgcaccag
     7381 acggcacagg ctttcgctat ccagttgctg ctgatgatca aatggggtca acaacgccgc
     7441 cattacgcct tgcaatgctt ttgccatacc tacctctacg gatgatgaat atattaacta
     7501 cctaccttta tacctgttat accagatcaa ataagcagca aataatacag aacgcttata
     7561 gtgcgatctg cttcactaaa ccgggatcgg aggtgcgatc gctaccgcat tttttgactt
     7621 tttttaccga gcgcgtgcca ggtagcggaa acgctattga ggtgggtttg cagagcgcga
     7681 tccgctttat cgggatctcg ctggcgaatg gcatcaacaa tcacaatatg ctgttgataa
     7741 ctcacgttat tatgttcatg cagctcacga tcgggaacgc ttgggcgagc agcgattagc
     7801 cagtccagca gagcaacatg aatagccata aagatcggat tgccgggaat ttcagccagc
     7861 acccggtgaa actcgacatc cgaacgaata aacagcgcgt tgtcatccag cgactggcta
     7921 ttaatttcca gcgctttcgt taacaacgcg atctgctcgt cggtggcatg ttccgccgca
     7981 tagcgtacca ggctggattc aaagaaaagc cgtagctgtt caaagtgagc gatgccgcca
     8041 ggatgagtaa gaaaatcttt cgccataccc gacagttcgc tgatgatggt atcagcagag
     8101 gggcgcgaga cgcgggcgcg ttcgccgtta ttgatttgca ccagaccttt acgcttcagc
     8161 gcagctaacg cttcacgcac ggagggacgt cccacattga agaaggccat taattcacgt
     8221 tcagacggta gctgttctcc ctcgccaaac tcatgacggc ggatcatctg ctccagctct
     8281 tcctcaacca tttcagacag ttttttacgc gccagcgggc ggcggcgcaa actacgcccg
     8341 agggatgtcg gtgaatcttc tgcttgcgaa tcaaatgcgt tcataacgtc cattcatgag
     8401 tggtcggtgg caaataatag caagcttatc gtaacacagc ttcaaaagca gggtgaaccc
     8461 gcgaggagac caaacaaaac aggcccttca gggcctgttg attattttac tacgcgcagc
     8521 gccggacgtc cgccacgcgg cggaggcggc tcgtcatcag gactactgtc gtcatcgtgg
     8581 tcgggcttat cgccatcaat gacggacatc acggtctcgc tttccgcgcc tgcggtattg
     8641 tcatcatcat ttaagctgac aacgtcttca tcataggcgg cttcaggctc aaacatggtg
     8701 cctgcgccgt tttcacgggc gtaaatcgcc agcaccgcag ccaaaggcac agaaacctga
     8761 cggggaacgc cgccgaagcg cgcattaaaa cgcacttcat cattagacag ctccagatta
     8821 cctaccgccc gcggcgcaat attgaggacg atttgcccat cgcgcgcata ttccataggg
     8881 acatgcacgc caggcagcat cacatccacc accagatgcg gggtcaactg gttatccagc
     8941 aaccactcgt agaaagcacg caacagatag ggacgacgcg gcgtcaactg tgacaaatcc
     9001 atacaggtta accccgaccg aggcgcattt cacgttcagc ttcggttaaa gaagccagga
     9061 aagaatcacg ttcaaagacg cgggtcatat agcctttcag ctctttcgcc cctgcgccgc
     9121 tgaattcgat acccaactgc ggtaaacgcc acaggagagg cgccaggtag caatcaacca
     9181 ggctgaattc gtcgctcagg aaatacggtt tctgaccaaa taccggcgca atcgccagca
     9241 gctcttcacg cagttgttta cgcgcagagt cgacctcgga agcagacccg tttacgatga
     9301 cgttcatcag cgtataccag tctttttcaa tacggtgcat gtacagacgg ctttcaccgc
     9361 gcgcgaccgg ataaaccggc atcagcggcg gatgggggaa acgctcatcc agatattcca
     9421 taatgatgcg agattcccac agggtcagct cacgatccac cagtgtcgga acgctttgat
     9481 tcgggttgag gtcaatcaga tcctgaggtg gattgtcctt ttccacatgt tcgatctcaa
     9541 aactaacacc cttttcagcc aacacaatgc ggacctgatg gctatagatg tcagtaggac
     9601 cagaaaacag cgtcattacc gaacgtttgt tggcagcgac agccatgaaa acctccaggt
     9661 atattcagaa tttttactgc taccagccac aatgtgacca gccagatgtt atgtcaccca
     9721 gggcgaaaaa agccatcatt gctcagaaac gagacaaaaa atgaacattc cccgctattt
     9781 gggcagaaaa ttggatgata gtttaccaga ttttgtgacc tttgtggtga gtcgattctg
     9841 gaattgggga aaaagagaca acaatccgca tttcattgtg acagataaat gcattgccca
     9901 taaaaaaacc cgccaaagcg ggttttttcg ctaacagttg tctgccgaag cagaaaacaa
     9961 ttaacgtttg gagaactgcg gacgacgacg tgctttacgc aggccgactt tcttacgttc
    10021 aacctgacga gcgtcacgag taacgaagcc agctttacgc agttcgccac gcagggactc
    10081 gtcgtactcc atcagagcgc gggtgatacc gtgacggatc gcaccagcct gaccagagat
    10141 accaccacct ttaacagtga tgtacagatc cagtttctca accatgtcga ccagttccag
    10201 cggctgacga actaccatgc gggcagtttc acgaccgaag tactgttcca gagaacgttg
    10261 gttgataacg attttaccgt tgcccggctt gatgaaaacg cgagctgcgg aacttttgcg
    10321 gcgaccagtg ccgtagtatt gattttcagc cattgcctat aatcccgatt agatgtcaag
    10381 aacttgcggt tgctgtgccg cgtggttgtg ctcgttgccc gcgtaaactt tcagtttacg
    10441 gaacatagca cgacccagcg ggccttttgg cagcatgcct ttaaccgcga tttcaatcac
    10501 acgctcagga cggcgggcaa tcatctcttc aaaggtcgct tgtttgatac caccgatgtg
    10561 gccggtgtgg tgatagtaca ctttgtcagt acgcttgttg ccggttacag caactttgtc
    10621 agcgttcaga acgatgatgt aatcaccggt atctacgtgc ggagtgtatt ccgctttgtg
    10681 cttaccgcgc aggcgacgag ccagttcagt agccagacgg cccagagttt taccggtcgc
    10741 gtcaacaaca taccagtcgc gttttacggt ttctggttta gctgtaaaag ttttcattaa
    10801 aagcttaccc aaataaataa gttacacgtt ggtgaacacc caaacgttta aatagttgag
    10861 gttcacacga caaagtccgg taaacctacc ccctcggata tgtttggccg gcacagagaa
    10921 agtttgggaa aaaactctct tgtaacgtgg ggtcgcagga ttatagagaa gtccaggtca
    10981 aagatcgacc cctttttgcg atttgccgcg ggttttgttc aggcctagtt caccctcggt
    11041 cggggaggtt gcacagatat aataccgcat aatgccggag cgctacgctt gtccggctta
    11101 cggcatatgc tcccgcttga gatactccgc actctgcatc tcttgcaggc gcgacagaca
    11161 gcgctgaaat tcaaacttga gtcgctcccc ctgataaatc tcatataacg gcgcggcggc
    11221 gctgaccacc agcttaacgt ggcgctcgta aaactcatcc accagcgcaa taaagcggcg
    11281 cgcttcgttc tccatcagcg gcgtcatgac cggcacgtca aacaacagaa ccgtgtgaaa
    11341 taaccttgag agcgcaatgt aatcatgctg gctgcgagcc tcgacgcaca gcgtagcgaa
    11401 agaggccgct aacgtttggt tttcaacgcc cagggtggat aaagggcgat gattgatttc
    11461 cagcgtcgga gcatgttctc gtgcggcccc cgctaacgcc agccacagtt tatccatttg
    11521 ccgccgggtt tcatcattaa gcggcgttag ccataaatgg gcctgcgtca gcgtccgcag
    11581 ccggtaatcg acgccggcgt ccacattcat aatgtcgcag tgctgtttaa tggcatcgat
    11641 agccggcagg aagcgggcgc gttgcaaacc gttgcggtag agttcctccg gcggaatatt
    11701 ggaggtcgcg accagcgtaa tgccgcgtgc aaacagcgct ttcattaaac cgcccagcag
    11761 catggcgtcg gtaatatcgg tgacgaaaaa ctcatcgaaa cacagtacgt ccgtctcggt
    11821 tttaaaccga tcggcaataa tgtctaacgg atcgatctgt ccctgtagcg cggtaagctc
    11881 ttcatgcacg cgcagcataa accgatgaaa atgcaggcgc aattttcgct cacccggcag
    11941 gctgtggtag aagagatcca tgagccaggt tttgccgcga cccacgcccc cccacatata
    12001 cagcccgcga accggtattt gcgcgtccgg ttcgtttttg cctaataatt tccccagtcg
    12061 cgctatcaga ccgccgggtg gcgtagccga cgattttttc gcggtgagcg cctgataaag
    12121 ggtttccaga cggtcgaccg cctctttctg tacgtcgtca ggctgatggg tgccttcgtt
    12181 gagtgcctgg agataacgcg atgtagggga aagactttgc ataatgttat tgttattcct
    12241 tgaaaatcga tgtgccgtcg ttcacggctg acgaaaaaaa ggccgttcta cactacgcga
    12301 tatgctgtcg ggattccact tctacgaaat tagcggttat agtggcataa tcaggcgcgg
    12361 gcatggagcc tggagccaac accctacgga aacataagac aacgggagat gttcatgacc
    12421 tgggaatatg cgctaattgg attagtcgtc ggtatcatca ttggtgccgt ggccatgcgt
    12481 tttggtaatc gtaagttacg tcaacagcag gcattgcagt acgaactgga aaaaaacaaa
    12541 gctgagctgg aagagtaccg tgaagagctg gttagccact ttgcccgcag cgcggaactg
    12601 ctggatacca tggcgcatga ttaccgccag ctgtatcagt atatggcgaa aagctccagc
    12661 agcctgctgc cggaaatgtc tgcggagtcg aatccgttcc gtaaccgtct ggcggagtct
    12721 gaggcgagca acgatcaggc gccagtacaa atgccacgtg attattctga aggcgcgtct
    12781 ggcctgttac gtagcggcgc aaagcgcgat taatcgcacg ccgttaagaa atttatcggg
    12841 cgcatcgctt gcgccctctc tctatctttc ctgtcccagc tattatcatt gttaccaggc
    12901 tgaaaattca ataacatcaa tctgttttga attgtctatc cgttcattca aggtacgaga
    12961 gcagcatcca tgaaaaaaca cacccagctg ttaagtgcat tagcgttaag tgtcggatta
    13021 actctttcgg caccgtttcc agcccttgca tcgataccag gccaggtgcc aggccaggcg
    13081 acgctgccaa gccttgcccc tatgctggag aaagtgctgc ctgctgtcgt cagcgtaaaa
    13141 gtcgagggaa ccgccaccca gagccaaaaa gtgccggagg agtttaaaaa attctttggc
    13201 gaggatctgc cagaccagcc gtcccagccg tttgaaggac tcggttcggg ggtgattatc
    13261 gatgccgcga aaggctatgt attaaccaat aatcatgtga ttaatcaggc acagaagatc
    13321 agcattcaac tgaatgacgg acgcgaattc gacgcgaagc tgatcggcgg cgacgaccag
    13381 agcgatatcg ctctgttaca aattcagaat cccagcaagt taacgcaaat tgccatcgcc
    13441 gattccgaca aactccgcgt cggcgatttc gccgtggcgg ttggtaatcc gtttggcctt
    13501 ggacaaaccg ccacctccgg gattatttca gcgctgggac gcagcgggct taatctggaa
    13561 gggcttgaga actttattca aaccgatgcc tctattaacc gcggcaactc cggcggcgcg
    13621 ctgcttaacc tgaacggcga gctgatcggg attaataccg caatcctcgc gccagggggc
    13681 gggagcatcg gcattggctt tgctattcct tccaatatgg cgcagacgct ggcgcagcag
    13741 ttgattcagt tcggcgaaat caaacgcgga ttgctgggaa ttaaaggcac tgaaatgacc
    13801 gctgatatcg ctaaggcatt caaactgaac gttcagcgtg gcgcttttgt cagcgaggtt
    13861 ttacccaatt caggttcggc gaaggccggg gtgaaatccg gagacgtgat tatcagtctt
    13921 aacggtaagc cgctgaatag ctttgccgaa ctgcgttcac gtatcgccac caccgaaccg
    13981 ggcacgaaag tgaagctggg cctgctgcgc gatggtaagc cgctggaggt ggaagtcacg
    14041 ctggattcca atacctcttc ttccgccagc gccgaaatga tcgccccggc gttgcaaggc
    14101 gcgacgttga gcgacggcca gctgaaagac gggacgaaag gcgttaaggt tgatagcgtc
    14161 gaaaaaagca gtcctgccgc gcaggccggt ttgcaaaaag atgatgttat catcggcgtt
    14221 aatcgcgatc gcatcagttc tatcgccgaa atgcgcaaag tgatggcggc aaaaccgtcc
    14281 atcattgctc ttcaggtagt acgcggcaac gagaacattt atctattgct gcgctaatcc
    14341 tgtcttaaac cgggcatcag cctgcgatgt gatgtccggt taactcatgg tatgctgctg
    14401 ccgttccctt ttttaacgac gcctccatca tgtttgtgaa gctcttacgt tcggtcgcaa
    14461 taggtttaat tgtcggcgct attctgttgg ccgtcatgcc ttctttgcgc aaaattaatc
    14521 ctatcgccgt cccgcaattc gacagtaccg atgagacgcc agccagttat aattttgcgg
    14581 ttcgccgcgc cgcgcctgcc gtcgtcaatg tctataaccg cagtatgaac agtaccgcgc
    14641 ataatcaact ggagatccgc acgctgggtt ccggcgtgat catggatcaa cgcggttata
    14701 ttattaccaa caagcacgtg attaacgatg ccgatcagat tatcgtcgcg ctacaggatg
    14761 gccgcgtctt tgaagcgcta ctggttggct ccgattcgct taccgacctg gcggtgctga
    14821 agatcaacgc cactggcggg ctgcctacca tcccgattaa tacaaagcgt acaccgcata
    14881 ttggcgacgt cgtactggct atcggcaacc catataatct gggacagacc atcacccagg
    14941 ggatcatcag cgcaacgggt cgtatcggcc tgaacccgac ggggcgacag aattttctcc
    15001 agaccgacgc ctcgattaac cacggtaatt ccggcggcgc gctggtcaac tcgttaggcg
    15061 aactgatggg gatcaacacc ctctcttttg ataagagtaa cgatggcgaa acgccggaag
    15121 gccttggttt tgcgattccc ttccagctag ccacgaaaat tatggataag cttatccgcg
    15181 acggtcgcgt gattcgcggc tatatcggta ttggcggacg agaaatcgcg ccgctgcacg
    15241 cgcagcaggg tagcggcatg gacccgattc agggcattgt cgttaatgaa gtaacgccaa
    15301 acggccccgc tgcgcttgcc ggtattcagg ttaatgattt gattatttcg gtcaataata
    15361 aacccgccgt gtccgcgctg gagacgatgg atcaggtggc ggaaattcgc ccgggctccg
    15421 tcattccggt cgtggtaatg cgggatgata agcagctcac gttccaggtg acggtgcagg
    15481 aatacccggc gtcaaactaa aacgacgcag cttttgcctg cgtcgttcga cggctagtca
    15541 ataaagactg gccctgccgg aaaatgcgcc aggaaactcg tgaagattag cagagcgggg
    15601 aaactctttt ccccgacggc ctcttcacgc agcgccttat cgagtgtcaa taagccagac
    15661 tcgctccctt cccccagaat gccgcccatc cagagcagtc gttgcgcctg ttgacgcgca
    15721 tactgcgatg cgcttttcca ggcgaccaga tgcagcaacg tttgtaacag caggacccga
    15781 gacgcgtgac catcgcgttg taatcgcctg aatacgggta atgcaatact acgcaccgtc
    15841 gagaaaccgc tcgccgcctc cccctcaatc ggcgataaac caacagccgc ctgtttgacg
    15901 aaatcgcata accgattgtg tgttaatggc cgctcgcctg cgctcatata ccctgcggcg
    15961 aaacagagta acccgatacc ctgagcccaa tcggtcgatg gcagaatccc ctgcggaaca
    16021 ttcggtgccg acgtctgtgc ggcacaaagc ccctcgtcgt aacactgtgc aaaacgttgc
    16081 tcatatattg ctgagttgac gccggaccac ggcagcaaat gcagcgctgg ctcaagctca
    16141 gttatctgat tcaccgtctc aacaacataa cgcaagatgg tttctctgga tggcatggat
    16201 gtaccttgcc gaaacgcaac catttcactc attactgtgt cctcattttg cgggagcata
    16261 atcactgctc ccgattagaa ttggattaca ttgccagcac gtacttcagc atcacgcccg
    16321 ccgcaatggc cgaaccgata accccggcca cgttcggccc catcgcgtgc atcagcagga
    16381 agttctgcgg gttcgactcc aggcccacct tgttcgacac cctggctgcc atcggcactg
    16441 ccgacacccc ggctgaacct atcagcgggt tgattttgtt cttactgcac aggttcagca
    16501 gcttcgccat cagcaccccg gccgccgtcc cgataccaaa ggcaatcacc cccagcagca
    16561 gaatgcccag cgtctgcggc tgcaggaact tatccgcgac cagcttcgcg cccaccgaca
    16621 gcccgaggaa aatggtcacg atattaatca gaccgttctg caccgtgtcg ctcagacgct
    16681 ccaccacccc gctttcacgc atcagattgc cgaagcagaa catccccagc agcggcgcgg
    16741 cgtccggcag cagcagggcc accagcagta acagcaccac cggaaagagg attttttccc
    16801 gcttactcac cgtgcgcagc tgcaccatgc ggattttgcg ctctttctcg ctggtcagcg
    16861 cgcgcataat cggcggctgg attaacggca ccagcgccat atacgagtag gccgccaccg
    16921 caatggcccc cagcagctcc ggtgccagct tgcccgacag ataaatcgcc gtcgggccgt
    16981 ccgcgccgcc gataatgccg atggccgccg cctgcggcag ggtgaaggca atcaggccga
    17041 agtagttcag cgtcagcgcc cccagtacgg tggcgaagat gccgaactgt gccgccgccc
    17101 ccagcagcag ggtgcgcgga ttggccagca gcgggccgaa gtcggtcatc gcgccgacgc
    17161 ccataaagat gaccagcggc gcgacgccgg agccaatcgc cactttatag aacagcgcca
    17221 gcacccccgg cgtgtagccc atgtccaccg ccagattttc catctggttc tggactgacg
    17281 gcagggccag cgccagcgct tccttgatgg cgtgcacgtc cggcgcgcag ttgagcttcg
    17341 cggcaatcac cgccagctgc ccggcgtcgt gatgggccag caggctctcc agcgcggtca
    17401 gcgccatgcc cgcttccggg atgttggaga gcaggccgcc gaagcctatc ggcagcagca
    17461 gtaacggttc gaactttttc gctatcgcca gccacagcaa cagcaggctg accagcagca
    17521 tgatggcctg gcccgcgcca aggtgcatca gccccatgcc ctgaagcagg gcgttcagac
    17581 tttccatttc agttctccgt tacgccagcg tcatcagggt gtcgcccacg gagacggcgt
    17641 ccccggactt caccgcgata ccgcggacgg tgccggcctg cgcggcgcgg atttcggttt
    17701 ccatcttcat ggcttccaga atcagcagca cgtcgccttc ggccacgctc tggccttcgg
    17761 tggcaatcac cttccagatg ttgcccgcca gcggcgcggt gaccggggtg ccggcgcctg
    17821 ccggggcggc agcctgaacc ggtgcggaag aggccgccgg aacagccgta gtaagctggc
    17881 tgatatcgcc gccgtcgctg accctcacca caaaggcttt gccttccact tccacggtgt
    17941 agataccgga ggcggcaggc ttctctgctt ttgccaccgg ctgcgcggct tccgcctgcg
    18001 gcagtggctc aaacgccgcc gggttatggc ggttctcaag gaatttgagg ccgatttgcg
    18061 ggaacagcgc cacggtgagc acgtcgtcga tggcgtttcc cgccagagta atccccttct
    18121 cctgcgcctg gcgcctgacg tccgcttcca gttcagccag ctccggcttc agcaggtccg
    18181 ccgggcggca ggtcaccgga gcgctccctt ccagcacgcg ggcctgtaac gcggcgttaa
    18241 ccggcaccgg ggtgtggccg tattcgcctt tcagaatgcc ggcggtttcc ttcgcgatgg
    18301 ttttgtagcg ttcgccggtc aggacgttga gcaccgcctg ggtgccgaca atctgcgagg
    18361 tcggggtgac cagcgggata aagccgaggt cctcgcgcac gcgggggatt tccgccagca
    18421 cctggtccag cctgtccgcc gcgttctgct gcttcagctg gctttcgagg ttggtcagca
    18481 tcccgcccgg tacctgcgcc accagaatac ggctgtcgta gcctttcagc tggccttcaa
    18541 aggcatggta ctttttgcgc acctcgcgga agtacgcggc gatattttcc agcttcagga
    18601 tatccagccc ggtgtcgtgc tcagtacctg ccaacgtcgc caccagcgcc tcggtggccg
    18661 ggtggccgta ggtggcgctc atggacgaaa tcgccgtgtc cacgccgtca acacccgcct
    18721 cgatagcctt cagcagggcc atctccgcca tcccggtggt ggcgtgacag tgcaggtgca
    18781 ggcgcacctc aaaacgtttt ttgatttcgc tcaccagctc aaaagcggcc atcggcgtga
    18841 gaatgccgga catatccttg atggcaatcg agtcaacgcc ggtctctaac aactgttcgg
    18901 tcaggtccag ccaggtctgc agggtgtgcg ccgggctggt ggtgtaggag agcgtcccct
    18961 gggcgtgcgc gccgtggctg cgcaccgcct gcagggcggc tttcatattg cgcgggtcgt
    19021 tcatggcatc gaagacgcgg aacacatcca tgccgttttt caccgcgcgt tcaacgaagc
    19081 gctccaccac atcatcggcg tagtggcggt agccgagcag gttctggccg cgcagcagca
    19141 tctgcagcgg ggttttgggc atggcttttt tgagttcgcg caggcgcagc cacgggtctt
    19201 cgccgagaaa acgaatacag gcgtcaaagg tggcgccgcc ccagcactcc agcgagccgt
    19261 agcccacgtc gtcgagctga gcggcaatcg gcagcatatc gtcaaggcgc aggcgggtgg
    19321 cgaacagaga ctggtgggcg tcacgcagga cgacgtcggt aatggcaata gtcatggatc
    19381 cctccgggaa ttaagcgtta aggcggtgat ggtgaatggc ggcggcaatc accggcttta
    19441 agcgggtgaa gtcgtccacg gcgggaacgg cgcgcggtgc gggcgcggcg acgggttccg
    19501 ggaagaagcg agtaatcacg gcagacatac cgcgaatggc aaagatcagc aggaacagaa
    19561 acgccagcac gaatcccatg ccgaggagca tcagagtgaa gccttcacct aatagcagag
    19621 ctgcattagt cataaaatag ccttcaggca ggaggcacga taatggggct atttatgacg
    19681 atgaaataat aagggtggat ttccctgagc cgccccggcc agagcccttg gttattatta
    19741 tcgtcataac gtattaccac cattatcgtg caatttacgt aatcaggttt atttgatgaa
    19801 acttacgttc tggcatattt catcagcgac gatctcttta cgctgattaa aaataatttt
    19861 gttctgttca aacagattat tcccatgggt atcaatagaa acaatcagcg ggccaaactc
    19921 tttaacccga cagacccaca gcgtttccgg catccccaga tcgcgccatt gggcatcttc
    19981 aatttcttcc acgcacacgg cggctacaac cgcacaaccg gcagggaata cgcagtgcag
    20041 cgctttgtgt tcagcacagc cctcttcggt acctttaccc ataccgcctt tacctacaat
    20101 taatttcacg ccagtctgcg caataaactc tttttcgaat ttctccatac gcatgctggt
    20161 ggttgggcca acggagacca tttcaaactt atcgtcttcg cctttaattg ggcggacaat
    20221 ggggccagcg tgtaaaatag cgccgccgcg aacatctacc ggaagttcgc gaccaccttc
    20281 aattaaacgg cgatgggcta cgtcacggca ggtaacaata tgaccgttga gataaataat
    20341 atcgccagcc ttaatatccg ctaaatcttc atctttaatt ggcgtagtca ggattttttt
    20401 agtcatcaga aattcactcc gctgtgagac gtaatggtgt aattcaaatc tttatcgaaa
    20461 acgatgtgcc ctttacggtg cgaccagcag ccgacgttta ccgccacgcc gatggtagaa
    20521 ggatgacgtg cggtgttttc aatgttcacg cccataacgg aggtattacc ggacatcccc
    20581 tgcggcccca ggccaatttt gttaatgccg tcttccagca ttttttccag cgaggctgca
    20641 cgctcattct cgttatgcga accgatcgga cgcatcagcg cttttttcga tagcagtgcc
    20701 gccgtttcaa cagaggtcgc tacgcccacg ccaaccagca gcggcggaca agcgttgagg
    20761 ccgtagctgg tcatcacatc cagtacaaag cgggtcacac cttcatagcc tgcacccggc
    20821 atcagcacca tcgctttccc cggcagagaa caaccaccgc ccgccatata ggtataaatg
    20881 ctgcactgat cggaattggg aacgatttcc cagaagaccg tcggcgtacc tttacccacg
    20941 tttttaccgg tgttgtattc atcaaaagtt tctacgctgt tgtggcgcag cggagaatct
    21001 acagttgctt tgatcaccgc ctcacgcaac aacgcttcca gctcgccaat cagcggaaag
    21061 ttcgtcccgc actccaccaa aaactgaatg acaccggtgt cctggcagga aggtcgatcc
    21121 agctctttcg ccagacgctg gttctcaatc atggtagtaa agatgacgtc ggccagttta
    21181 ctggtctctt tcttatgcaa atcttccagt tttgcagtga catcatcagg caaaactttg
    21241 ccggtatatc ccacaaactt ggccataacg tcggtcatat gggatatctg ttcacttttg
    21301 ctcataaatg ctccttagtc agaacagctt ccgttaatta cggatgaaaa gggaaaagga
    21361 ttggcagcag gatcaagctg acaatggttg aaacgataat cagggggata ccggccttag
    21421 cgtagtcgac aaatttatag ccacccgcgg agagcaccat catgttggca ggcataccga
    21481 taggagttgc gtaggcgcag gaaccgccaa tgaccgtcgc catcagaacc gcacgcgggt
    21541 cggcccccat acctgcggca atggacaaac tcaccggcac caatagcgct gtcgttgcgg
    21601 tattggacat aaagttggtc atcacaacgg ataaggcgaa aacggcgatc agcaacatga
    21661 acggtgagga gttttgcccc agcatgccga ttacatagtc cgcaaccagc ttgcctgccc
    21721 cggtcatttc cagcgctttt gccagcgcca gggtgccgcc aaagataaaa atagtctgtg
    21781 aatcaatggc tttataggcc tgtttttccg tgagtacgcc gcttacgacc agcacaagag
    21841 cgccaataca accggtcacg gccaggctga caccgatctt cttctcaaag atcatgccga
    21901 ggatcgttgc gatcaacacc acgagtgaga gccgttgttt ccactgtgga acatggctgt
    21961 agtcacgttg ctccccgacg ctccccacct caccgccggt cgcattattc ggcagaaagc
    22021 gatagccaat agtcaggaag tagagaatgc cgcagatgag catcgggaga ccgatttttg
    22081 cgtattcaaa aaagccaaag ccgccgccaa tattctgtag cgcagactgc gcgataagat
    22141 ttcccggcgc gccaattaac gacaggttac cgcccaacgc agcggcgaaa accagcggca
    22201 tcagtagacg agaacgcgag aagcccgatt ttgccgccac gccgatcacc accggaatca
    22261 aaaccgcagc ggtaccggtg ttagagagga cgccagacat caaacccacc accaccataa
    22321 tggtgaagat cagctgtttt tctgttttcg cgaagcgcgt gatgacgccg cccactttgt
    22381 ttgccatacc ggtctcaaac aacgcaccgc ccacgataaa catcgcgaca aagaggatga
    22441 cgttagtgtc gataaagcca gcaaaggcct gtttaatatt cagaacgccg gtgataacta
    22501 aggccacgca gacaatcatg gaagtgacgg ccagcggcac tttttcccat acaaacatga
    22561 cgatagcgaa caccaataaa catagggtaa gggtaatggg ttccatattt ataattatcc
    22621 aatcaatgat atatgatatt gtatccaata ttgacgagga gaaattattc ccatacaaaa
    22681 aataagtcaa atcgtttctc aggaaagatg caggagtggg atctacatca agatcgtagt
    22741 tggatcgtta ctggacgtga ttaatagaat tgaagaattg gttgaagcgc ctgcgatact
    22801 cacgcaggcg aaaagatcag gcagaagggt caccaacata gcgggtcagc atattctcca
    22861 ttgagcgaat aatgtgttcg cgcatgcgct ggcgtgccaa tgtttcatca tgaagttcaa
    22921 gagcttgcag aatactttta tgttcctgaa tggaaatcac ggcatactct tcttcggtga
    22981 ccttatggcc catcgacagg ccgttccaca tattacagag caacattttc attttttcgt
    23041 tgccagcaac attccatatt tccatatgaa atgcctgatt caggtcggag tattccgccg
    23101 agttattttc cgcgagagcc ttttcagcgg cataatgcac ctcggctatc cgcgaaatat
    23161 cggtgccagg acgagaagct ttagccaccg cctcactttc taacagcgcg cgaatttcat
    23221 agtgttcacg gatcgtttgt tcattgatgc ccaacaccac cgccccttta ttagggcgca
    23281 cttttatcag cccatccgcc gccagaatct gaaacgcctc gcgcactggc atactggaca
    23341 cgccgaccat tccggcaatg ccttctaacg taatctcttg cccttccact aactccctcg
    23401 aaagaatcgc tttacgcagc accgccgcga cctgttcttt cgctgaaaga agcttaatct
    23461 tccctaactt aggcctctgc actttcccaa tccttcatat gttgacgcat tatttctgct
    23521 aaagagagga aataacgctg cataacttgc ccaatctcat cacgccgccc ctggcgtatg
    23581 acgtcagcca gttcagcgaa aagctgcgcc gactcctgat tatctttttt cagatgcaaa
    23641 ataacataag agacataacc gtccaggaac tgctgataca ccttttccag atagcggtta
    23701 ttcacataag aaatcagcat cgcatgacac tccagttcgc aggatttgtc ttctgcgaca
    23761 gccagcgctt gcgcacgtat caggagggca tcgcctactt cgctgggtat cagcgaaaac
    23821 atttcggcgg ccatcgcggc aatcacgcga aaaatatgac tcacgcgatc ggcctcaaga
    23881 tgcgcgacct gcatgtgcct gttgggcagt cggattaaaa aaccttcctg ttcgagtgac
    23941 tgtagcgctt ctcgaaccgg cattcgtgaa agaccgagct gctccgcaat actttcctgc
    24001 gcgagttctt ctcccgcttt tatattgccg gaaagaattt catagcgaag catttgcgta
    24061 atgtgatcgc gggtttgcgt tctttggatc tttttcacga cgttctcgtt aataaccgat
    24121 aagacgtgag gagtttagca gatttagtgc ttgatttcgt ggcttgttta tagttaaaga
    24181 agccggagca aaagccccgg catcgggcag gaacagctta tttattaata aaatcttcac
    24241 ccaactgaat atcttttttc agcgtatcca gcatagcgtc cagcgaatgt tgctcgaaag
    24301 tgctcagtgt gccgatggat ttacgctctt ctacgccgtt tttacccagc agcagcggct
    24361 gagagaagaa acgggcatac tgaccgtcgc cttccacata ggcgcattcc accacgcctt
    24421 tttcgccctg cagagcgcga accagagaaa gaccgaaacg cgcggcagcc tggcccatag
    24481 agagggttgc cgatccgccg ccggctttcg cctcgacgac ttcagtaccg gcgttctgaa
    24541 tacgtttagt cagctcggcc gcttcttgtt cggtaaaact tacgcctgga atctgcgata
    24601 gcagcggcag aatcgtcacg ccggagtgcc cgccaatcac cggaacttca acttccgttg
    24661 gcagcttacc tttcagctct gcgacaaagg tattagagcg gatgatatcc agcgtggtaa
    24721 cgccaaacag tttgtttttg tcgtatacgc ctgctttttt caacacttcc gccgcaatcg
    24781 caacggtggt gttcaccggg ttggtgataa tgcccacgca cgctttcggg caggttttag
    24841 cgatctgctg caccaggttt ttcacgatgc cggcgttaac gttaaacagg tcggaacggt
    24901 ccatacccgg cttacgcgcc acacccgcag aaatcagtac tacgtcagcg ccttcaagcg
    24961 ccggggttgc gtcttcaccg gagaaacctt tgatttttac agcggtgggg atgtggctta
    25021 aatcaacggc cacaccggga gtcactggag cgatgtcgta cagggagagt tctgaacctg
    25081 aaggcagttg gttttttaaa agtaatgcca gcgcctgacc gataccacca gcagcgccga
    25141 ggactgcgac tttcatccta aactccttat tatatgatta gctaagtgtc tattgctccg
    25201 cggcggcgac cttaattcac aaattcaatg attacaatcc tcactcatca agaatgcgga
    25261 gtcgcgcaat tttggctttt atgcatttaa tttgcgtaat ccggatcggc tgcaaccaga
    25321 ga
//
LOCUS       DAJVSD010000039        24979 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.039, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000039 DAJVSD010000000
VERSION     DAJVSD010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 24979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24979
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.039"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..233
                     /locus_tag="OQP62_001341"
     CDS             <1..233
                     /locus_tag="OQP62_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UTRA domain-containing protein"
                     /protein_id="HCS1720935.1"
                     /translation="AIERLSDKKISFSESRYAAKLIGNERGHYLDIGEDAPVLHLEQL
                     VFFSRGLAIDFGNVWLKGNKYYLGTILQRLDA"
     gene            251..724
                     /locus_tag="OQP62_001342"
                     /pseudo
     CDS             251..724
                     /locus_tag="OQP62_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462683.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
     gene            721..1008
                     /locus_tag="OQP62_001343"
     CDS             721..1008
                     /locus_tag="OQP62_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HCS1720936.1"
                     /translation="MSKMILFVCATGVATSTAVAEKVMEYCKDNGLDVNYSQTNVASL
                     PNNTDGAALVVSTTKVPYELDIPVVSGLPIITGVGEDKVLEKIVSILKGQA"
     gene            1084..2442
                     /locus_tag="OQP62_001344"
     CDS             1084..2442
                     /locus_tag="OQP62_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HCS1720937.1"
                     /translation="MNDIAHTLYTVVQYVLGFGPTVLLPLVLFFLALFFKVKPAKALR
                     SSLIVGIGFVGIYAIFDILTSNVGPAAQAMVERTGISLPVVDLGWPPLAAITWGSPIA
                     PFVIPLTMLINVAMLALNKTRTVDVDMWNYWHFALAGTLVYYSTGSFVLGLSAAAIAA
                     IVVLKLADWSAPLVAKYFGLEGISLPTLSSVVFFPIGLLFDKIIDKIPGVNRIHIDPE
                     NVQKKMGIFGEPMMVGTILGVLLGIIAGYDFKHILLLGISIGGVMFILPRMVRILMEG
                     LLPLSEAIKKYLNAKYPGRDDLFIGLDIAVAVGNPAIISTALILTPISVFIAFLLPGN
                     KVLPLGDLANLAVMASMIVLACRGNIFRAVITAIPVIIADLWIATKIAPFITGMAKDV
                     NFKMAEGSSGQVSSFLDGGNPFRFWLLEIFNGNIIAIGLIPVLALVIYGVFRLTKGTV
                     YA"
     gene            2435..3919
                     /locus_tag="OQP62_001345"
     CDS             2435..3919
                     /locus_tag="OQP62_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HCS1720938.1"
                     /translation="MPDYHAALVIDIGTTNCKVSCYSCHDVSVLEVRKFPTPTISSDK
                     GEVDLDIEALWQALRLVMAELVASVPFPVKNISIASFGESGVFVDKEGVILTPMLAWY
                     DRRGESYLSSLSKAEAEELYSITGLPPHSNYSAFKMRWLLDNYSLHERKDICWLHAPE
                     VLLWRMTGAKKTEISLASRTLCLDIARRTWSRNAAGILGIPFGVLAPLIKPGEVAGWV
                     TATLRQELGLPHEVKVTLAGHDHMVGARALQMQPGDVLNSTGTTEGILLLNTQPTLDV
                     QARRDKLANGCYSDGEFFTLFASLPVGGYALEWVKKTFRLTDKEISTGLEKVMEQYLK
                     PSWSVEHVPVFIPHLRGSGSPHKNQHTRGLLFGLTDSLPPESLLESVFIGLAMEFAHC
                     HGCFNIPAGRTVKVIGPAVKNPYWLQLKADILQCPIEAIAFDETVSLGALLIACPNVV
                     PPTVPVAERYFPDAVRSAKLKIYQQQWLSFYQFKLRQEGAFIGE"
     gene            3982..4842
                     /locus_tag="OQP62_001346"
                     /pseudo
     CDS             3982..4842
                     /locus_tag="OQP62_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462679.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase"
     gene            4852..5121
                     /locus_tag="OQP62_001347"
     CDS             4852..5121
                     /locus_tag="OQP62_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HCS1720939.1"
                     /translation="MIRQKVRVMNSTGLHARPAATLAKIVKKYQSSLTLVNNDKEIPI
                     KGMMSILGAGVKGNTMIDLICDGQDELAFMDELKSAFADGFGESV"
     gene            complement(5212..5535)
                     /locus_tag="OQP62_001348"
     CDS             complement(5212..5535)
                     /locus_tag="OQP62_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
                     /protein_id="HCS1720940.1"
                     /translation="MSAKTKFKSPAFEAIHSAASGLFSVDAIPQETMRSFDTACLSSI
                     KDLQPLEIKALREELNVSQSVFARYLNTSVSTVQKWESGAKRPSGMSLKLLNVVQKHG
                     LKVLV"
     gene            complement(5519..5877)
                     /locus_tag="OQP62_001349"
                     /pseudo
     CDS             complement(5519..5877)
                     /locus_tag="OQP62_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462676.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            6093..7286
                     /gene="nepI"
                     /locus_tag="OQP62_001350"
     CDS             6093..7286
                     /gene="nepI"
                     /locus_tag="OQP62_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine ribonucleoside efflux pump NepI"
                     /protein_id="HCS1720941.1"
                     /translation="MNENIAEKFRADGVARPNWSAVFAVAFCVACLITVEFLPVSLLT
                     PMAQDLGISEGVAGQSVTVTAFVAMFSSLFITQIIQATDRRYIVILFAVLLTASCLMV
                     SFANSFTLLLLGRACLGLALGGFWAMSASLTMRLVPARTVPKALSVIFGAVSIALVIA
                     APLGSFLGGIIGWRNVFNAAAVMGVLCVIWVVKSLPSLPGEPSHQKQNMFSLLQRPGV
                     MAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFDVDGLTLVLLSFGIASFVGTSFSSYVL
                     KRSVKLALAGAPLLLALSALTLIVWGSDKTVAAAIAIIWGLAFALVPVGWSTWITRSL
                     ADQAEKAGSIQVAVIQLANTCGAAVGGYALDNFGLLSPLALSGGLMLLTALVVAAKVR
                     ITPMS"
     gene            complement(7346..8728)
                     /locus_tag="OQP62_001351"
     CDS             complement(7346..8728)
                     /locus_tag="OQP62_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HCS1720942.1"
                     /translation="MRYRFPDNFWWGSACSALQTEGDSLNGGKSQTTWDVWFERQPDR
                     FHQGIGPAETSTFYRHWKQDIALLKQLKHNSFRTSLSWARLIPDGVGEVNPQAVSFYN
                     HVIDELLAQGITPFITLFHFDMPMVMQEKGGWENRDVVEAFGRYAQTCFTLFGDRVKH
                     WFTFNEPIVPVEGGYLYDFHYPNVVDFKRAATVAYHTVLAHSTAVRAWRAGRYDGEIG
                     VVLNLTPSYPRSQHPADVQAAHHADLLFNRSFLDPVLKGEYPAELVALLKTYDQLPAC
                     QPGDRQLIADGKIDLLGINYYQPRRVKCRDTAVNPQAPFMPEWLFDYYDMPGRKMNPY
                     RGWEIYAPGIYDIITNLRDNYGNPRCFISENGMGVENEQRFVQAGQIHDDYRIDFISE
                     HLKWLHKGISEGCHCLGYHMWTFIDNWSWLNGYKNRYGFVQLDLATQTRTVKKSGEWF
                     AATAEHNGFD"
     gene            complement(8834..9127)
                     /locus_tag="OQP62_001352"
     CDS             complement(8834..9127)
                     /locus_tag="OQP62_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720943.1"
                     /translation="MKRKTLLLIATLVALPGVTYADSPFSSLQSAHEKNTILKDLRKM
                     CTPKGALTDEAWEKKIMASEGNQQHIREAMIAIERNNQHNYWQALGKVECPEM"
     gene            9324..9581
                     /locus_tag="OQP62_001353"
     CDS             9324..9581
                     /locus_tag="OQP62_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014341509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1720944.1"
                     /translation="MRRIEIVLGELERLTRGLCLADLAQETAFTAEAIGFNLGLARNS
                     VSKDLNQLWNDGLAIKSRGRPVYFLASPGAGNVAGTSAGRV"
     gene            9553..12123
                     /gene="dagR"
                     /locus_tag="OQP62_001354"
     CDS             9553..12123
                     /gene="dagR"
                     /locus_tag="OQP62_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014341510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator DagR"
                     /protein_id="HCS1720945.1"
                     /translation="MLGRQLEESEREVRSVADVLPHEEHYAPDDPFTSLIGYDRSLRD
                     AVEKGRAAVLYPHGLHVLLTGPSGVGKTFFAELMHRFACEQASGAIPPLVYFNCAEYA
                     HNPELLSSHLFGHRQGAFTGANEHKTGLVEQADGGYLLLDEVHRLSYEGQEKLFSILD
                     KGEYRPLGVSSQPRSISVRLICATTEPVGSALLRTFQRRIQVCIDLPGIRQRSVEEQI
                     ELIVGFLQRESRKIERTVSIDKPLLLWLLNKPLEGNIGQLKSDIQFLCAQAWASGMTE
                     HNDTLQLDKRLAEMSVNPTPEQRLLVDTLFDGKARLNIDARTLPALKTSLATGAEIEE
                     SDLFYSFLTREYVNLRNSNVPPAETLAILKNKLSSIFEYGLYSRDSVAHPPRYGDQIE
                     ERVTLLIGCVEQVLGFSLPENLVNPLRKHFLALIGYVQRGLIPQLYSSSLILDRCKDE
                     YDNATLLCRKINELLHIQCPATEVVWLCLFLKECRHYRQRIDASPDCGVILIAHGATT
                     ATSQAQYVNRVLERELFSAIDMPFEQSVHDTLETLTQMIQTRQYRRLILLVGIGSLIH
                     FGSTISKLFQIDVLLMPNITLTSLLEVGLDLSYETSDLPQLTALLQSKNIPCQLCTPQ
                     QENGGKVLVISCITGMGTAEKIKKVLEESFGELMSQDTRMVILDYNEVRSLERVQQAL
                     NASERLAGIVGTFQPGLPDIPFISLEELFSEQGPELVLSLLTPDLSNAERRLEMERSA
                     MRFISALTMESIINHISVLNPQRILKEMEGVFNHLTSSLSLKPSRQVTLRFLIHCCCM
                     VERIVINRKPLQMALERQPNLDARAFSVIKSAFLPIEDAYAIRLSDAEYFYIYELLYS
                     "
     gene            12345..12770
                     /locus_tag="OQP62_001355"
     CDS             12345..12770
                     /locus_tag="OQP62_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HCS1720946.1"
                     /translation="MTTTQPLPHILLLTHGGWGQPLCNSLRMVTGEIKGVTEIALMPV
                     DTLGEFYQRVEAVVKTLPEGSLILTDFVGGTTSNVAARLSADYPVAVIAGLNASLLLE
                     ALDRREQGMLTACVDELVEAGRSSCLDVVAHVRQLQQSL"
     gene            12781..13266
                     /locus_tag="OQP62_001356"
     CDS             12781..13266
                     /locus_tag="OQP62_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system
                     mannose/fructose/N-acetylgalactosamine-transporter subunit
                     IIB"
                     /protein_id="HCS1720947.1"
                     /translation="MANIVLCRIDSRLIHGQVVTKWVGQSQANRIAVVSDELDADPFM
                     KNIYLMAAPPNIKVDCFGNQSFAAAWKENQLGDGNVLVLFPSLAAVQDAIQLGFDVTR
                     IQVGGLGGGPNRKAVFQNITLDEKDVGILNDLKNRGVQVFFQTIPEDKPQPLDDILKK
                     F"
     gene            13412..14161
                     /locus_tag="OQP62_001357"
     CDS             13412..14161
                     /locus_tag="OQP62_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HCS1720948.1"
                     /translation="MDTLLFASLMGLYYWFARLRLGYTFSAMLLQPVVIAVFVGLLLG
                     NMQTAMIIGAGMQLVYLGVTSTPGGNVPSDPALAACISIPIAVKAGMDPNLAIALAIP
                     FGVIGVFLDQLRRTLNAAWVHMADKHAETANMAGIMRCAFLYPALLGLVLRFPVVFAA
                     NYFGQDVVESFLKLMPHWLTHSFEIMGGILPALGFAITIMVIGKKSLLPWFIGGFFAV
                     LYLKVDIMAMAIFGTCVAFLIKGLAKNEGAA"
     gene            14158..15018
                     /locus_tag="OQP62_001358"
     CDS             14158..15018
                     /locus_tag="OQP62_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462668.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HCS1720949.1"
                     /translation="MMSSDVMQHELVERARESGALTKADITKAWFIYWLGAEVSSSYE
                     RLQSLIFCASMTPIIKKLYPQKEEQVEALKRHLNFFNSEQTFGAVIQGISIAMEEQKT
                     RGEPINDSSITGIKTGLMGPLAGMGDSIIWAAVMPLLIAIFIPFAANGSAMGGIIPLI
                     LYPAITLAISYGMVHKGYTLGRDSIIGLLQGGRIKELIYGANVLGLIMMGALSASYVK
                     ITTPLKISALKGSEVVVQQILDSIAPGLLPLAAVFAIYFYLVKKGPRYTTILLSIVAL
                     SIVCSLLGVL"
     gene            15022..16131
                     /gene="dgaE"
                     /locus_tag="OQP62_001359"
     CDS             15022..16131
                     /gene="dgaE"
                     /locus_tag="OQP62_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glucosaminate-6-phosphate ammonia lyase"
                     /protein_id="HCS1720950.1"
                     /translation="MTPNIYQQLGLKKVINACGKMTILGVSSVAPEVMQATARAASAF
                     VEIDALVEKTGELVSRYTGAEDSYITSCASAGIAIAVAAAITHGDRARVALMPDSTGM
                     ANEVVMLRGHNVDYGAPVTSAIRLGGGRIVEVGSSNLAARWQLESAINEKTAALLYVK
                     SHHCVQKGMLSIDDFVQVAQANHLPLIVDAAAEEDLRGWVVSGADMVIYSGAKAFNAP
                     TSGFITGKKTWIAACKAQHQGIARAMKIGKENMVGLVYALENYHQGQTTVTAAQLQPV
                     AEAISAIHGLYADIEQDEAGRAIWRIRVRVNASELGLNAQDVEAQLRGGEIAIYARKY
                     QLHQGVFSLDPRTVAEGEMALIVARLREIAEHAAD"
     gene            16118..16861
                     /locus_tag="OQP62_001360"
     CDS             16118..16861
                     /locus_tag="OQP62_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HCS1720951.1"
                     /translation="MQQINFYRQRVAINVLAKDIANAKAIYEAAEGHAVIGVLSAQFA
                     TVEEGVPEVKRWMAEVPSISVGLGAGDPAQYYKAAMIAAHTHPAHVNQTFTGSGFAAG
                     ALAATGGEQTHINALVSPTGTPGEVVISTGVSSSQGMPARVSCEAAVRMMQDMGAHAA
                     KFFPMGGEKSLPELYALATTAARHGMTLIEPTGGISLDNFGIILQTCLEAGVPRVMPH
                     VYSSIIDPQTGNTRPEDIIQLMEIVKALV"
     gene            17097..18038
                     /locus_tag="OQP62_001361"
     CDS             17097..18038
                     /locus_tag="OQP62_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HCS1720952.1"
                     /translation="MKKSPTSTPHDAVFKTFLRHPDTARDFLNIHLPHLLRIRCDLTT
                     LKLAPDSFIEKNLRAFYSDVLWSLKTCEGDGYIYVVIEHQSTPDAHMAFRLMCYATAA
                     MQRHLDAGHKTLPLVIPMLFYHGAKSPYPFSLCWLDEFGDPALARQLYATAFPLVDIT
                     VVPDNEIMQHRRIAMLELVQKHIRQRDLMGLVERLAVLLITGNANDSQLKALFNYLLI
                     QHGSTPRFGKFIREVARCVPQHKERLMTIVDRIRESGRRKGKREGVQQGIQQGIHQGK
                     QEEALRIAHTMLEQGIEREMVLMITGLSDEEIKAKRH"
     gene            complement(18081..18983)
                     /locus_tag="OQP62_001362"
     CDS             complement(18081..18983)
                     /locus_tag="OQP62_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HCS1720953.1"
                     /translation="MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSRMSSQFLTMIRL
                     LFAGLILVTFSFMHGDKIFSILKNRKDALSLLIFSVVGALTVQLTFLLTIEKSNAATA
                     TVLQFLSPTIIVAWFALARRTRPGILVLTAILTSLIGTFLLVTHGNPTSLSISSGALF
                     WGIASAFAAAFYTTWPSRLIAQYGTLPVVGWSMSFGGLILLPFYAKEGTHFAVSGSLI
                     LAFFYLVVIGTSLTFSLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGISFTLPDW
                     LGTLLILSSVILISLDSRRRARAA"
     gene            19489..20184
                     /locus_tag="OQP62_001363"
     CDS             19489..20184
                     /locus_tag="OQP62_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MgtC family protein"
                     /protein_id="HCS1720954.1"
                     /translation="MEERMLMFPYILNLLAAMLLGALIGAERQWRQRMAGLRTNALVA
                     TGAAVFILSSMTTSPDSPGRIAAQIVSGIGFLGAGVIMREGMNVRGLNTAATLWCSAG
                     IGVLCGLGQFKNALAATIIILCANILLREAAQRINQLPVSAEAEKRYILKVTCNKEDE
                     SAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDN
                     DNITAIHWSIDSQ"
     gene            20404..23130
                     /gene="mgtA"
                     /locus_tag="OQP62_001364"
     CDS             20404..23130
                     /gene="mgtA"
                     /locus_tag="OQP62_001364"
                     /EC_number="7.2.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium-translocating P-type ATPase"
                     /protein_id="HCS1720955.1"
                     /translation="MTDMNIENRKLNRPASENDKQHKKVFPIEAEAFHSPEETLARLN
                     SHRQGLTIEEAGERLKVYGRNEVAHEQVPPVLVQLLQAFNNPFIYVLMALAGVSFITD
                     YWLPLRRGEETDLTGVLIILTMVSLSGLLRFWQEFRTNRAAQALKKMVRTTATMLRRG
                     PGNIGAVQEEIPIEELVPGDVVFLAAGDLVPADVRLLASRDLFISQLILSGESLPVEK
                     YDVMADVAGKDSEQLPDKDKSLLDLGNICLMGTNVTSGRAQAVVVATGSRTWFGSLAK
                     SIVGTRTQTAFDRGVNSVSWLLIRFMLIMVPVVLLINGFSKGDWVEASLFALAVAVGL
                     TPEMLPMIVSSNLAKGAIAMSRRKVIVKRLNAIQNFGAMDVLCTDKTGTLTQDNIFLE
                     HHLDVSGVKSSRVLMLAWLNSSSQSGARNVMDRAILRFGEGRIAPSTKARFIKRDELP
                     FDFVRRRVSVLVEDAQHGDRCLICKGAVEEMMMVATHLREGDRVVALTETRRELLLAK
                     TEDYNAQGFRVLLIATRKLDGSGNNPTLSVEDETELTIEGMLTFLDPPKESAGKAIAA
                     LRDNGVAVKVLTGDNPVVTARICLEVGIDTHDILIGTQVEAMSDAELASEVEKRAVFA
                     RLTPLQKTRILQALQKNGHTVGFLGDGINDAPALRDADVGISVDSAADIAKESSDIIL
                     LEKDLMVLEEGVIKGRETFGNIIKYLNMTASSNFGNVFSVLVASAFIPFLPMLAIHLL
                     IQNLMYDISQLSLPWDKMDKEFLRKPRKWDAKNIGRFMLWIGPTSSIFDITTFALMWY
                     VFAANNVEAQALFQSGWFIEGLLSQTLVVHMLRTQKIPFIQSRATLPVLLTTGLIMAI
                     GIYIPFSPLGAMVGLEPLPLSYFPWLVATLLSYCLVAQGMKRFYIKRFGQWF"
     gene            23152..23244
                     /gene="mgtR"
                     /locus_tag="OQP62_001365"
     CDS             23152..23244
                     /gene="mgtR"
                     /locus_tag="OQP62_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001082117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein MgtR"
                     /protein_id="HCS1720956.1"
                     /translation="MNRSPDKIIALIFLLISLLVLCLALWQIVF"
     gene            23445..23923
                     /locus_tag="OQP62_001366"
                     /pseudo
     CDS             23445..23923
                     /locus_tag="OQP62_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462661.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(24246..24926)
                     /locus_tag="OQP62_001367"
     CDS             complement(24246..24926)
                     /locus_tag="OQP62_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HCS1720957.1"
                     /translation="MSTPANFNGQRPAIDANDAVMLLIDHQSGLFQTVGDMPMPELRA
                     RAAALAKIATLCNMPVITTASVPQGPNGPLIPEIHANAPHAQYVARKGEINAWDNADF
                     VQAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITMAR
                     VVQAGVVPMDTAAVASELQRTWNREDAVEWADVYTKIFPAYQLLIESYTKAQEVVKNN
                     ELLDSQRA"
BASE COUNT         5842 a         5992 c         6824 g         6321 t
ORIGIN      
        1 cagcaataga aagattatct gataagaaaa taagtttttc tgaaagccgt tacgcagcta
       61 aattaattgg taatgagcga ggccattatc ttgatattgg tgaagacgca cctgttttgc
      121 atttggaaca gttggtattt ttctctagag gattggccat tgattttggt aacgtctggt
      181 taaaaggtaa taaatattat cttggcacta ttttacagcg cctggatgcc tgactagcaa
      241 agaggaatct atgcaggata ttcattttcg ccgtcattat gttcgccacc tccctaaaga
      301 ggtgagtcag aatgacataa tcaaggctct tgccagtccg ttaattaacg atggtatggt
      361 tgtatctgat tttgccgatc acgtcattac gcgagaacag aattttccaa cgggtctacc
      421 ggttgagcct gtaggtgtcg ctattccaca tactgatcac aggtatgttc gccaaaacgc
      481 cattagcgtt ggaatactgg cagaacccgt caatttcgaa gatatgggcg gggaaccaga
      541 tcccgtacct gtcagggtgg tgtttatgct tgctttaggt gaaagcaata agcagctcaa
      601 cgtactgggt tggattatgg atgtgatcta ggatgaggat tttatgcagc agttactggt
      661 catgaatgat gatgaaattt atcagtcaat ttacacacgc atatctgaaa gaggtgaagt
      721 atgagtaaaa tgatactatt tgtttgcgca acgggtgttg ctacttccac ggctgtggca
      781 gaaaaagtaa tggaatattg taaagacaat gggcttgatg ttaattattc ccaaactaat
      841 gtagcctcat tgccaaacaa taccgatggt gcagctttgg ttgtatcaac aacgaaagtt
      901 ccttatgaac tggatattcc ggttgttagt ggtctgccaa tcattaccgg agtaggtgaa
      961 gataaagttc ttgaaaaaat agtttcaatc cttaaaggcc aagcctgatt tcataaataa
     1021 aaaacagata aattacccag gcgctaacgc gaggtctggt cacatctgaa taagaggtcg
     1081 gatatgaatg atatagcaca tactctctat accgttgtgc aatatgtcct gggatttggc
     1141 ccaacggttt tattgccgct ggtccttttt ttcctggcat tgttcttcaa agtaaaaccc
     1201 gctaaagcac ttcgctcatc gttaattgtc ggaatagggt ttgtcggaat ttatgccatc
     1261 tttgacatac ttaccagcaa cgtaggcccg gctgcacagg caatggttga gcgaactggt
     1321 attagtcttc ctgttgtcga tttaggctgg ccaccattgg ccgcaattac ctggggctca
     1381 ccaatcgccc cctttgtcat tccgctgacg atgctgatta atgtcgccat gctggccctg
     1441 aataagacac gtactgttga tgtcgacatg tggaactact ggcactttgc cctggcggga
     1501 acgctggttt actacagcac agggagtttt gttttgggtc tgtccgcagc cgctattgcc
     1561 gcgatcgtgg ttctcaaact ggcggactgg tcagcgccat tagtggcaaa gtacttcggt
     1621 ctggaaggta tttcacttcc gaccctgtca tctgtcgtct tctttccaat tggattgctg
     1681 ttcgacaaaa ttatcgacaa gatcccgggt gttaaccgta ttcatattga tccggaaaac
     1741 gttcagaaaa aaatgggaat cttcggcgag cctatgatgg tgggtactat tctgggggtc
     1801 ttgttgggca tcattgccgg gtatgacttt aaacatatcc tgttgctggg gatcagcatt
     1861 ggcggtgtca tgttcattct tccgcgtatg gtacgaattt tgatggaagg tttattacct
     1921 ctgtctgaag ccattaagaa atatttgaat gccaaatatc ctggccgtga tgatctcttt
     1981 atcggactgg atatcgcggt agcagtaggt aacccagcca ttatctctac agcactgatt
     2041 ctgacaccca tctctgtctt cattgcattc cttcttcctg gcaataaagt cctgccactc
     2101 ggagaccttg cgaacctggc agtcatggct tccatgattg tactggcatg tcgtggcaat
     2161 attttccggg ctgtgataac cgcaattcct gttattatcg ccgacttgtg gattgcgacc
     2221 aaaattgcgc catttattac cggtatggct aaagatgtca atttcaaaat ggctgagggg
     2281 tcaagtggtc aggtatcaag cttccttgat ggcggtaacc ccttccgttt ctggctgctt
     2341 gaaattttca acggaaatat tattgctatc gggctgattc ctgtgcttgc gctggttatt
     2401 tatggtgttt ttcgcctgac aaaaggaacg gtctatgcct gattaccacg cagcgcttgt
     2461 cattgacatt ggtacaacta actgcaaagt cagctgctat tcctgtcatg acgtgtcagt
     2521 tctggaagtc cgcaagtttc cgacgccaac aatatcgtcg gacaaaggcg aggtagattt
     2581 agatatcgaa gcgctgtggc aggcactgcg actggtaatg gctgaactgg tggcttcagt
     2641 accgtttccg gtaaaaaata tcagtattgc gagtttcggt gagtctggcg tctttgtgga
     2701 taaggagggc gtcattctta ccccgatgct ggcctggtat gatcgacgtg gtgaatctta
     2761 tctctcgtca ttaagcaagg cagaggctga agaactgtat tctataacgg gattgccacc
     2821 tcacagtaat tactcagcat ttaaaatgag atggttgctt gataactact ccttgcatga
     2881 aagaaaagat atctgctggt tacatgctcc agaagtgttg ttgtggcgaa tgacaggtgc
     2941 gaaaaagacg gaaatatccc tggccagtag aacgttgtgt ctggacattg ctcgccgtac
     3001 ctggtctcgt aatgctgccg ggattctcgg cataccgttc ggtgtactgg ctccgttgat
     3061 aaagccgggt gaagtggctg gatgggtgac ggcaacgctc aggcaggagt tgggattacc
     3121 acatgaggta aaagttaccc tggccggaca cgatcatatg gtcggtgccc gcgcattaca
     3181 gatgcaaccg ggcgatgtgc tgaattctac cggcacgaca gagggtattt tactgctgaa
     3241 tacacagcca acgcttgatg tgcaggctcg cagggataag ctggcaaatg gttgttactc
     3301 cgatggtgaa tttttcacgc ttttcgcttc tctgcctgtc ggcggttatg cgcttgaatg
     3361 ggtgaaaaaa acctttcgtt taactgataa ggaaataagc acaggcctgg aaaaagtcat
     3421 ggagcaatac ctcaaacctt cctggtctgt cgagcatgtg ccggtattta ttcctcattt
     3481 gcggggctcg ggttcgccac ataaaaacca gcacactcgt ggcctgcttt ttggtctgac
     3541 ggattcactt cctccggagt ctctgcttga gagtgtcttt atcggcctgg cgatggagtt
     3601 tgcacactgt cacgggtgct ttaatatccc ggcaggcagg acagtaaaag tcattggccc
     3661 tgcggtgaaa aacccatact ggctccagtt gaaggctgac atcctccagt gtccaattga
     3721 ggccattgct tttgatgaaa ccgtctccct tggagcattg ttgatagcct gtccgaatgt
     3781 tgtccccccg actgttcctg tggctgagcg atattttcct gacgcggttc gttctgcaaa
     3841 gttgaaaata tatcagcagc aatggctgtc attttaccaa tttaaactgc ggcaagaagg
     3901 ggcgtttatt ggtgaataac tgtgataact caatagttcg ataatttact tatactgctc
     3961 acataaatat ctggagttaa tatgtcttta gtcaatggta ggatcctgct caattgtatt
     4021 caggaaaaac atgtccttgc gggggcattt aatacaacga acctggagac aacaatttcc
     4081 attcttaatg caatagaacg ttccggattg cccaatttta ttcaaattgc tcctactaat
     4141 gcacagcttt caggttacga ttacatttat gaaatagtga agtgacatgc cgataaaatg
     4201 gatattcctg tcagcctgca tctggatcat gggaaaactc tggaagatgt taagcaggct
     4261 gtccgggccg gatttacctc agtaatgatt gatggcgcgg cgctaccgtt cgaagaaaat
     4321 attgcattta cccgagaagc tgtcgatttc tgtaaatcat ttggtgttcc cgtcgaagcg
     4381 gaattaggcg ctattctggg taaggaagat gatcatgtca gcgaggctga ctgcaaaact
     4441 gaacctgaga aggttcagcg ctttgttgag gagacagggt gcgacatgct ggcagtgtca
     4501 attggtaatg tacatggtct tgaagacatc ccacgcattg atatcccgct attacaacgc
     4561 atcgcgtctg tcagtccggt acctttggtt attcatggag gttctggtat tgacgcggat
     4621 attcttcgca gctttgttaa ttacaaagta gccaaagtga atattgcgag tgatttgcgc
     4681 aaagccttta ttactactgt tggtaaggct tgggtaaata ataacaacga ggctaatctg
     4741 gcgcgtgtca tggcgagcgc aaaacaggca gttgaggatg atgtttattc taaaattaag
     4801 atgatgaata aacatcactc agcactccgc aaagtctctt aaggaaaata tatgattaga
     4861 caaaaagtac gcgttatgaa cagtacgggg cttcatgcgc ggccagccgc tacacttgcg
     4921 aaaattgtca aaaaatacca gtcttcatta acgctagtta ataatgacaa agaaattccc
     4981 attaaaggaa tgatgagtat tttgggggct ggcgtaaagg gaaacacaat gattgattta
     5041 atttgtgatg gacaggatga actggctttt atggatgaat taaaatccgc atttgctgat
     5101 ggctttggtg agtcagtata gtgcaattcc cgtcaaacgg cgcaggaagt tgtagaggct
     5161 tcctgcactc attatcgtat gaatagcctt aacagaccat cggtaaaacc ctcataccag
     5221 cacctttagc ccgtgttttt ggacaacatt aagtagtttc agtgacatcc cgctgggacg
     5281 cttggcgccg ctttcccact tttgaaccgt tgatacgctg gtattcaggt accgagcgaa
     5341 aaccgactgg ctaacgttga gttcttctcg taacgctttt atttcaagtg gctgcaggtc
     5401 tttgatgctg cttaagcagg ccgtgtcaaa actgcgcatt gtctcctggg gaatggcatc
     5461 cacgctaaat aatccagatg ccgcgctatg aatcgcttca aaggcagggc ttttgaattt
     5521 agtttttgct gacatggcgc acctctacca gttctttgtt attaatgagt gccgttatct
     5581 gatcttcggt caggcaagca tagtgttttg ctaactcacg gaaacccgca agttcgcgat
     5641 agcgaatgtt ggccatattc tgtttggtat acaggaaggt gtaaaaccaa tgttcgcctc
     5701 cctttgccaa cacgattgcg cgatcgcggt tttaattgag acgtttttat aaactccgcc
     5761 gccaagatta tctgcttttc cttgcagtac ggcgttgatg gcctcgctta actcgtcatc
     5821 ttttatcgtg tgggacttcg cttctctgtt aaaccacctg gttttgaaga ttcgcatcag
     5881 gttgacatcc tgtaatctaa agtatagcac caggtgatac actatgtctt accttttggt
     5941 tttacacgca gcgagagaag ataattctca acgctcgacc agcctcgcaa aatgcagcgc
     6001 aacaatgtca gttgctaaaa cgttaatcag atcacatttt gtaatgttac actgcgtgga
     6061 ttttccgcac taaaacgacg caggtaacca caatgaatga aaatatcgca gaaaaattcc
     6121 gcgctgatgg ggttgccagg cctaactggt cagccgtttt tgccgtggcg ttttgtgtcg
     6181 cctgcctgat taccgttgag tttttgcccg ttagtctgtt gacgccgatg gcgcaggatc
     6241 tggggatctc cgagggcgtc gccggtcagt cggtcaccgt tacggcgttt gtcgcgatgt
     6301 tttccagcct gttcattacc cagattattc aggcgaccga caggcgttat atcgttattc
     6361 tgttcgccgt tttgctgacg gcttcttgtc tgatggtctc ctttgccaac agctttacgc
     6421 tgctattgct gggccgcgcc tgtcttgggt tggcgctggg cggattctgg gcgatgtcgg
     6481 cgtcgctgac catgcgactg gttcccgcgc gtaccgtgcc gaaagcgctg tcggtgattt
     6541 ttggcgcggt ctccatcgcg ttagtgatcg ccgcgccgct gggcagtttt ttgggcggta
     6601 ttattggctg gcgtaatgtc tttaacgccg ctgcggtgat gggcgtactg tgcgtcatct
     6661 gggtggtgaa atcactgccg tcgctgccgg gcgaaccttc tcaccagaaa cagaatatgt
     6721 ttagcctgtt gcaacgccct ggcgtgatgg ccgggatgat cgccatcttt atgtcttttg
     6781 ccgggcagtt cgctttcttt acctatattc gcccggtcta tatgaatctg gcgggctttg
     6841 acgttgatgg tctgacgctg gtgctgctaa gttttggtat tgccagcttc gttggcactt
     6901 ctttctcctc ttacgtcctg aaacgttcgg taaaactggc gctggccggt gcgccgctgc
     6961 tactggcgct gagcgcgctg acgctcattg tgtggggaag cgacaaaacc gtggcggcgg
     7021 caatagcgat tatctgggga ctggcgtttg cgttggtgcc ggtgggatgg tcaacgtgga
     7081 tcactcgttc tcttgccgat caggcggaaa aagccggttc catccaggtc gcggtgattc
     7141 aactggcaaa tacctgtggc gcggcggtgg gcggttatgc gctcgacaat ttcgggctgc
     7201 tttcgccgct ggcgctttcc ggcggtctga tgctgttgac ggcgttagtc gtggcggcga
     7261 aagtccgtat tacgccaatg agttgatatt gctgccattt gtaggccgga tacgacgtta
     7321 gtcgttatcc ggcaataata aacgcttaat caaaaccgtt atgctctgcg gtggcggcaa
     7381 accattctcc gctttttttc accgtgcgcg tttgggtggc taaatccagt tgtacaaaac
     7441 catagcgatt tttatagccg ttcagccatg accagttatc gataaaggtc cacatgtggt
     7501 agccaagaca gtgacagccc tcgctaatgc ctttatgcag ccatttaaga tgctcagaga
     7561 taaagtcaat ccggtaatca tcgtgaatct gtcccgcttg cacaaaacgc tgctcgttct
     7621 caacgcccat cccgttttcg gagataaaac agcgcggatt gccgtaatta tcccgcaggt
     7681 tggtgatgat gtcgtaaatt cctggcgcgt aaatttccca gccgcggtaa gggttcatct
     7741 tgcgccccgg catgtcgtaa tagtcaaata accactccgg cataaacggc gcttgcggat
     7801 tcaccgctgt atcacggcat ttcacgcggc gcggctgata atagttaatc cccagtaaat
     7861 cgattttgcc gtcggcaata agctgacggt cgcctggctg acaggcaggc agctggtcat
     7921 aggttttcag cagcgccacc agctccgccg ggtattctcc ctttaatacc gggtcaagaa
     7981 aactgcggtt gaataacaga tccgcatgat gcgcggcttg cacatcggcg ggatgctgcg
     8041 agcgtgggta ggacggcgtc agattcagca ctacgccgat ttcaccgtcg tagcgcccgg
     8101 cgcgccaggc gcgcacggcg gtcgagtgcg ccagcacggt atggtacgcc acggtggccg
     8161 cacgtttaaa atccaccaca ttgggatagt ggaagtcgta caaatagccg ccttccaccg
     8221 gcacaatcgg ctcgttaaag gtaaaccagt gcttcacgcg gtcgccaaac aaggtaaaac
     8281 acgtttgcgc gtaccgacca aacgcctcta cgacgtcgcg attttcccag ccgcctttct
     8341 cctgcatgac catcggcata tcaaaatgga acagcgtaat aaacggcgtg atgccctgcg
     8401 ccagtagctc gtcgatgacg tgattgtaga agctcaccgc ttgtggattc acctcgccta
     8461 caccgtctgg aatgagccgc gcccagctta gcgaggtgcg aaaactgttg tgttttaact
     8521 gtttcagtag cgcgatgtct tgcttccagt ggcgatagaa cgttgaggtt tccgctggac
     8581 cgatgccctg atgaaaacga tcaggctggc gctcgaacca cacatcccac gtggtctggc
     8641 ttttaccacc attcagacta tccccttcgg tttgcaacgc tgagcaggcg ctgccccacc
     8701 agaagttatc gggaaaacgg tatcgcattg tcgtactcct tgatcgcgta aattcgctcc
     8761 agaatatgcg cttttggcga acagaaaccg gttacagtcc gcattttcgc gaccaaaaag
     8821 cggaaaagct gtgctacatc tccgggcatt ccaccttgcc gagagcctgc cagtagttat
     8881 gctgattgtt gcgctctatc gcgatcatcg cctcccgaat atgctgctgg ttcccctcgc
     8941 ttgccatgat ttttttctcc caggcttcat cggttagcgc gcctttgggc gtacacattt
     9001 tgcgcaaatc ctttaaaatc gtattttttt catgcgccga ctggagtgag ctaaacggag
     9061 agtcggcata cgtgacgccc ggtagcgcga caagtgtggc aataagcaga agcgtttttc
     9121 gtttcataaa cggtatcctt atcggtttgc actttttcaa gagtaagtgt agaccgtgcg
     9181 acgttcactc atcggggcgt gctatccgtt ggcgttgaag tcaggcaaaa gtgggaaggc
     9241 ggtttctcgc tgcgccttca ctttcttgcg tggcagaata gtgtatgttc tgactactct
     9301 tttatttcgt aagcggtagt gtaatgagac gtattgagat cgtactggga gagctggaac
     9361 ggctgacgcg cgggctatgc cttgccgatt tggcgcagga gacggcgttt acggcggagg
     9421 cgataggttt caatcttggg ctggcgcgta actccgtcag caaagatctc aatcagttat
     9481 ggaatgacgg cctggcaatc aaaagccgtg gccgcccggt ctattttttg gcatcgccag
     9541 gcgctggaaa cgttgctggg acgtcagctg gaagagtctg aacgcgaggt gcggtcggtg
     9601 gcggatgtgc tgccgcatga agagcattac gcgcccgacg atccgtttac cagcctgatt
     9661 ggttacgatc gcagcctgcg cgatgcggta gaaaaaggcc gtgcggcggt gctctatccg
     9721 cacggtttac acgttctgct taccgggccg tccggcgtcg gtaaaacctt ttttgcggaa
     9781 ctgatgcacc gtttcgcctg tgaacaggcg agcggcgcta tcccgccgct ggtctacttt
     9841 aactgcgcgg aatacgccca taacccggaa ctgctctcct cgcatctgtt tggtcatcgg
     9901 cagggggcgt ttaccggcgc gaatgaacat aaaacaggcc tcgtggagca ggcggacggt
     9961 ggttatctgt tgctggacga ggtgcaccgt ctgtcttatg aagggcagga aaagctgttt
    10021 tctattctgg ataaaggcga gtaccgtccg ctcggcgtga gcagccagcc gcgatcaatt
    10081 tcggtacgcc tgatttgcgc cactaccgaa ccggtcgggt cggcgctgtt acgtactttc
    10141 cagcggcgta ttcaggtatg cattgatttg ccgggcattc gccagcgctc cgttgaagaa
    10201 cagatcgaac tgatcgtggg gttcttacag cgggaaagcc gcaaaataga acgcacggtc
    10261 agcattgata aaccgttgtt gctctggttg ctgaataaac ccctggaagg caatatcggt
    10321 cagctaaaaa gcgatattca gtttctttgc gctcaggcgt gggcatcggg aatgaccgag
    10381 cataacgaca cgctacagct ggataaacgg ctggcggaga tgtcggttaa cccgacgccg
    10441 gaacagcgtc tattggtgga tactctgttt gacggtaaag cgcggctaaa tatagacgcg
    10501 cgcacgctgc ccgcattgaa gacgtcgctg gcgaccgggg cggaaattga agagagcgac
    10561 ctcttttaca gcttcctgac gcgcgagtat gttaatttgc gcaacagtaa cgtccccccg
    10621 gcggagacgc tggcgatcct gaaaaataaa ctcagctcga tttttgaata cggtctctat
    10681 agccgcgaca gcgtggcgca tccgccgcgc tatggcgacc agattgaaga gcgcgtgacg
    10741 ctgctgattg gctgcgtaga gcaggtgttg ggcttttcgc tgccggaaaa tctggttaac
    10801 ccactgcgta aacacttcct ggcgctgata ggctacgtgc agcgcggcct gatcccgcag
    10861 ctttactctt ccagtttgat cctggatcgc tgcaaagacg aatatgacaa cgccacgctg
    10921 ctgtgtcgga aaatcaacga actgctgcat atacagtgtc cggcgacgga agtggtctgg
    10981 ctatgcctgt tcctgaaaga gtgccgccat tatcgtcagc gtatcgatgc cagccccgac
    11041 tgcggggtca ttttgatcgc tcacggcgcg accaccgcca ccagtcaggc gcaatatgtc
    11101 aaccgcgtgc tggagcgcga gctgttcagc gccatcgaca tgccgtttga acagtcggtg
    11161 catgacacgc tggaaacgct gacccaaatg attcaaaccc gccaatatcg gcggcttatc
    11221 ctgttggtgg gcatcggttc attgatccat ttcggcagca ccatcagtaa attattccag
    11281 atagatgttt tgctcatgcc gaatatcacg ctgaccagtc tactggaagt cgggctggat
    11341 ttaagctatg aaaccagcga cttaccacag ttgacggcgc tcctgcagag taaaaatatc
    11401 ccctgccagc tttgtacgcc gcagcaggag aacggcggca aagtgctggt catctcctgt
    11461 attaccggca tgggaacggc ggaaaaaatc aaaaaggtgc tggaggagag ctttggcgaa
    11521 ctgatgtcgc aggacaccag gatggtgatc cttgattata acgaggtacg aagtctggag
    11581 cgcgttcagc aggcattgaa tgccagcgag cggctggcgg ggattgtcgg cactttccag
    11641 ccggggctgc cggatattcc gtttatttcg ctggaagagc ttttctccga acaagggccg
    11701 gaactggtgt tgagcctgtt aacgcccgat ctgtccaacg ctgaacgccg tctggagatg
    11761 gagcgcagcg cgatgcgctt tatcagcgcg ctaacgatgg agagcatcat caaccatatt
    11821 tctgtgctta acccgcagcg tattctgaaa gagatggagg gcgtttttaa ccatctgacg
    11881 tcttcgcttt ccctgaaacc aagccgccag gtgacactgc gcttcctgat ccactgctgc
    11941 tgtatggtag agcgtattgt gattaaccga aaaccgttac agatggcgct ggaacgtcag
    12001 ccgaatctgg acgcgcgcgc gtttagtgtc atcaaatccg cttttctgcc gatcgaagac
    12061 gcgtacgcca tccgtttatc ggatgcggaa tatttttata tctacgaact gctctatagc
    12121 taatcctttt actggcgggg cttcgcgcct cgccagacct ttcttcttcc tcgcgtgaca
    12181 caaattctgg cacaaccttt gctcttctga tgatgcgtta tgccggatag cggcgtaaac
    12241 gccttatccg gcctaccggg agtgtcctgt cggtccggta agcgcagtgc caccgggcaa
    12301 tatatgccgg tgttctcatg taattgcgcc aggaggccat tattttgact accacacaac
    12361 cgttgcccca catcctgctg ctgacgcatg gcggctgggg acaaccgctt tgcaacagcc
    12421 tgcgtatggt cacgggcgaa attaaaggcg tgacggaaat cgcgctaatg cctgtcgata
    12481 cgctgggcga gttttatcaa cgcgtcgagg ccgtggtgaa aacgctgccg gaaggctcgc
    12541 tgatcctgac ggattttgtc ggcggcacga cgtccaacgt cgcggcgcgg ctaagcgccg
    12601 attatccggt ggcggtgatt gccggattga atgcgtcgct actgctggag gcgctggaca
    12661 ggcgcgaaca agggatgcta accgcctgcg tggatgagtt agttgaggcc gggcgcagta
    12721 gctgcctgga tgtggtcgcc catgtacgtc agctacaaca atcactctaa ggaaaacatc
    12781 atggccaata tcgttttatg ccgcatcgac agccgtctca ttcatggaca ggttgtcacg
    12841 aagtgggtcg gacaatctca ggcgaaccgg atagccgttg tgagtgatga actggacgcc
    12901 gatccgttta tgaaaaatat ctacctgatg gcggcgccgc caaatatcaa agtggattgc
    12961 ttcggcaacc agagttttgc cgctgcatgg aaagaaaatc agcttggcga cggtaacgtg
    13021 ctggtgcttt ttccctcact ggcggcggtg caggacgcca tacaattggg ctttgacgtc
    13081 acccgcattc aggttggcgg tctcggcggc gggccaaacc gcaaggcggt ttttcagaat
    13141 attacgctgg atgaaaaaga cgtcggcatt cttaacgacc tgaaaaaccg tggcgttcag
    13201 gtatttttcc agaccattcc ggaagataag ccgcagccgc tcgacgatat cctgaaaaaa
    13261 ttctaaccct ttaatagaca caaaatcatt ctggatgcat cgaggcggca actgagtgaa
    13321 tcccctggag cttactaaag taagtgactg gggtgagcga aggcagccaa caaagaggca
    13381 gcctgaagga tgaagtgtat aggataacac tatggatacc ttactctttg caagcctgat
    13441 ggggttgtat tactggtttg cccgtttacg cctcggctac accttctccg cgatgctgtt
    13501 acaaccggtg gtgatcgcgg tatttgtcgg gcttttgctt ggcaatatgc agaccgcgat
    13561 gatcatcggc gcagggatgc agctcgttta tttgggcgtg acctcaacgc cgggcggcaa
    13621 cgtgccgtcg gacccggcgc tggcggcctg tatctccatt cctatcgcgg tgaaggccgg
    13681 tatggaccca aacctggcga tcgcgctggc aatcccgttt ggcgtgattg gcgtgtttct
    13741 cgatcagctg aggcgcacgc tgaacgccgc ctgggtgcat atggcggata aacacgcgga
    13801 aacggcaaac atggcgggca tcatgcgttg cgcctttctt tacccggcat tgctggggct
    13861 ggtgctgcgc ttcccggtgg tctttgccgc taactacttt ggccaggatg tggtggaaag
    13921 tttccttaaa ctgatgccgc actggttaac ccactccttt gaaatcatgg gcggcattct
    13981 gccggcgctg ggctttgcca tcaccattat ggtgatcggt aaaaagagcc tgttgccgtg
    14041 gtttatcggc gggttcttcg cggtgttata cctcaaggtc gacatcatgg cgatggccat
    14101 cttcggcacc tgtgtcgcct tcttgattaa aggcctggcg aaaaatgaag gagcagcatg
    14161 atgagcagtg acgtaatgca acatgaactg gttgagcgcg cgcgggaaag cggggcgctg
    14221 accaaagcag atatcaccaa agcctggttt atctactggc tgggcgccga ggtttccagc
    14281 tcctatgagc gcttacaaag cctgattttc tgcgcctcga tgacgccgat catcaaaaaa
    14341 ctttacccac aaaaagagga gcaggtagaa gcgctaaaac gccaccttaa cttctttaac
    14401 tccgagcaga ccttcggcgc ggtgattcag ggcatctcta ttgccatgga agaacaaaaa
    14461 acgcgcggcg agccgattaa cgactcgtct atcaccggca ttaaaacggg cctgatgggg
    14521 ccgcttgccg ggatgggcga ctcgattatc tgggcggcgg tgatgccgct gttgatagcg
    14581 atctttattc cgttcgcggc aaatggcagc gcgatgggcg gtattatccc gctgattctc
    14641 tacccggcga tcaccctggc gatcagctac ggtatggtcc acaagggata tacactgggg
    14701 cgtgattcga ttatcggcct gctgcaaggg gggcgaatca aagaactgat ctacggggcc
    14761 aacgtgctgg gtttgatcat gatgggcgcg ctttccgcca gctacgtcaa aatcaccacg
    14821 ccgttaaaaa ttagcgcctt gaaaggatct gaagtggtgg ttcagcagat cctcgactct
    14881 atcgcgccgg gcttactgcc actggcggcg gtattcgcca tctacttcta tctggtaaaa
    14941 aaagggccgc gctacaccac cattttgctg tcgattgtcg cactgagcat agtctgttcg
    15001 ttgttgggag tgctgtaaat catgacgccg aatatctatc aacaactggg gttgaaaaag
    15061 gtcattaacg cctgcggcaa aatgaccatt ctgggcgtct caagcgtcgc gccggaggtc
    15121 atgcaggcca ccgcgcgcgc ggcttccgct ttcgtcgaga ttgatgcgct ggtggaaaaa
    15181 accggcgaac tggtatctcg ctatacgggt gctgaagata gctatatcac ctcgtgcgcc
    15241 tcggcgggta ttgccattgc cgtcgctgcc gctatcaccc acggcgatcg ggcgcgcgtc
    15301 gccctgatgc cggacagtac cggtatggcc aatgaggtag tgatgctgcg cgggcataat
    15361 gtggactacg gcgcgccagt caccagcgcc attcgtcttg gcggcgggcg catagtggaa
    15421 gtggggtcga gcaatctggc ggcccgctgg caactggaaa gcgccattaa cgaaaagacc
    15481 gccgcgctac tgtatgtgaa atcacaccat tgcgtacaga aaggcatgtt gagcattgac
    15541 gattttgtac aggtggcgca ggccaaccac ctgccgttga ttgtcgatgc cgcggcggaa
    15601 gaggatttgc gcggctgggt ggtgagcggc gcggatatgg ttatctacag cggcgcgaaa
    15661 gcctttaatg cgccaacctc cgggtttatc actggtaaga aaacgtggat tgccgcctgc
    15721 aaagcgcagc accaggggat tgccagggca atgaaaatcg gcaaggaaaa catggttggg
    15781 ctggtgtatg cgctggagaa ttaccaccag ggccagacga ccgtgaccgc agcacagtta
    15841 cagccggtcg cggaagcgat ttctgccatc catgggcttt atgccgatat cgaacaggat
    15901 gaggccgggc gtgcaatctg gcgtattcgt gtgcgggtga acgcatcaga attggggctg
    15961 aacgcgcagg acgtcgaagc gcagttgcgc ggcggcgaga tagcgattta cgcccgcaaa
    16021 tatcagcttc atcagggggt ttttagcctc gatccacgca cggtagctga aggggaaatg
    16081 gcattgattg tggcgcgact cagggagatt gcagaacatg cagcagatta atttttatcg
    16141 tcagcgggta gcgattaacg tgctggcaaa ggatatcgcc aacgcgaagg ctatctatga
    16201 agccgccgaa ggccatgcgg tcattggtgt actttccgcg cagttcgcta cggtagaaga
    16261 gggcgtgccg gaggtgaaac gctggatggc ggaggtgccg tctatctcgg tggggctggg
    16321 cgcaggcgac ccggcgcagt actacaaagc ggcgatgatt gccgcccata ctcacccggc
    16381 ccatgtcaac cagaccttta ccggcagcgg cttcgcagcg ggcgcactgg cggcgacagg
    16441 cggtgagcaa acacatatta acgccctggt cagcccgacg ggaacgcctg gcgaggtggt
    16501 gatttctacc ggcgtcagca gcagccaggg aatgccagcc cgcgtttcct gtgaagcggc
    16561 ggtacgcatg atgcaggata tgggcgcaca tgcggcgaag tttttcccga tgggcggcga
    16621 aaagtcgtta ccggaactct atgcgctggc gacaaccgcc gcccgccacg gcatgacgct
    16681 catcgagccg accggcggta tctcactgga taatttcggt attatcctgc aaacctgcct
    16741 ggaggcaggc gtgccgcgcg tcatgccgca tgtttacagc tcgattatcg atccgcaaac
    16801 cggcaatacg cgccccgaag acatcattca gttgatggag atagtcaaag cgctggtgtg
    16861 agatttatcg ccgaagagcg ctacgtttac ctggcctaca gatgacgtgt atttgtaggc
    16921 ccggttagcg ttacgctacc gggcgataat gcgtagcagg ctgagcaaaa atgtacgtat
    16981 tgcagccgtc agtgattccc tttcgagcct cctcgcaggg ttaaattttc ctgaatgctg
    17041 tctgtatttt tggcgagtac agtggcgtca tcttattcct caggtgacgg atcgccatga
    17101 aaaaaagccc cacgtccacg cctcatgatg cggtattcaa aacgttttta cgccatccgg
    17161 ataccgcgcg ggattttctc aatattcatc ttccccattt gctaagaata cgttgcgatc
    17221 tgacgacgtt gaaactggcg ccggacagtt ttatcgagaa aaatttacgc gcgttttatt
    17281 ccgacgtcct ttggtcgcta aaaacgtgtg aaggtgacgg ttatatctat gtcgttatcg
    17341 agcatcagag tacgccggac gcgcatatgg cgttccggtt aatgtgttac gcgactgccg
    17401 cgatgcagcg ccatctggat gctggccata aaacgttacc gctggtgatt cccatgctgt
    17461 tttaccatgg cgcgaaaagc ccgtatccct tttcgctttg ctggctggat gagtttggcg
    17521 atcctgcact ggcgcgtcag ctttatgcga cggcatttcc actggtagac attacggtgg
    17581 tgccggataa cgagattatg cagcatcgac gtatcgcgat gctggaactg gtacaaaagc
    17641 atatacgtca gcgcgacctg atgggattgg tcgagcgttt agcggtactt ctgattacgg
    17701 gaaacgctaa tgacagtcag ctaaaagcgc tgtttaatta tttgctaata cagcatggca
    17761 gcacgcctcg ttttggcaag tttatccgcg aggtggcgcg ttgtgttccc caacacaagg
    17821 agagattaat gacgatcgta gacagaatac gtgaatcggg gcgcagaaaa ggtaagcgtg
    17881 aaggcgtgca acaaggcata cagcaaggta tacatcaagg taagcaggag gaagccttgc
    17941 gtattgcgca tacgatgctg gaacagggga tcgagcgaga gatggtgctg atgattaccg
    18001 ggctttctga cgaagagatt aaggcaaagc gccattaaac ttttccctct tccgcccggt
    18061 catcgtgatt atcaacggcg ttaagcggcc cgcgcgcgtc gacgggaatc gagggagatc
    18121 agaatcactg acgagagaat gagcagcgtg cccagccagt ccggcaaggt aaaactaatc
    18181 cccaacagca gcagcgacag cagggcgctg cttaacggtt ccgcgcagct taaaatgctg
    18241 gctttggggc caccaatcag ctgcgcgcct ttcaaataca ggctgaacgt cagcgacgta
    18301 ccgatcacca ccaggtagaa aaaggccaga atcaggctgc cgctcaccgc aaagtgcgtt
    18361 ccttctttag cgtagaaggg cagcagaata aggccgccaa aggacatact ccagccgacc
    18421 actggcagcg tgccgtattg ggcgattagc ctggaaggcc aggtcgtata aaaggcggcg
    18481 gcaaatgcgg aggcgatacc ccagaacagc gcgcctgaag agatcgacag cgatgttgga
    18541 ttgccgtgag tcaccagtaa aaaggtgccg ataagcgatg taagaatggc ggttaagacc
    18601 agaatgcctg gtcgtgttct tcgcgctaat gcaaaccacg cgacaataat ggtcggcgat
    18661 aaaaattgca gcactgtcgc ggtggcggca ttggattttt caatcgtgag caggaaggtt
    18721 agctgaacgg tgagcgcgcc caccacggag aaaatcagca gactcagtgc atctttgcgg
    18781 tttttaagaa tcgaaaatat cttatcgccg tgcataaagg agaaggtcac cagtatcagc
    18841 ccggcgaata acaaacgtat catcgtcagg aactgtgacg acatacggct ttgctccatg
    18901 atgtactgcg cgcaaacgcc tgaactcccc cacaatacgg cggcaatcag gacgtttagc
    18961 atcccttttc tggtggaacc cattttttcc tcgtcatgtt gttttatttt tttacgtgca
    19021 ggcatcataa cagagctatc gccggcatta agcaggaatt tattgtttaa tgatttcaga
    19081 cgagcctgtt attgacataa tattgtcatt tttttgtcac gggaaatatc aaacaaactt
    19141 aaacaaatcg tcactatccc cgcctttgca ctttacagaa catattgact gactataata
    19201 agcgcaaatt catgcaggag taatatgttg gacagtcact tttacgtaaa tcatctggca
    19261 agttaacgca cgctattcct gcgctgcttg ccgaaccggt gggcagcaat ctccccttgt
    19321 gacgattgtc atcccaataa tgttacaaca cgcgcattgt cgcgaggtaa tcgtcatgtt
    19381 catgtttaaa cacgctttat ttcctccgcc gttaacacga cgctaattgc ctcagggcag
    19441 aaatttgtcg tgtgctaaat atagcacgta cttattcttc cagaaaaaat ggaggaacgt
    19501 atgttaatgt ttccttatat tttaaattta ctggccgcta tgctgttggg cgcgctgatt
    19561 ggcgcggaaa gacaatggcg tcaacgtatg gcgggattac gcactaatgc gctggtggcg
    19621 acaggcgccg ccgtttttat tctgagctcc atgacgacat cgccagacag ccccgggaga
    19681 attgcggcgc agattgtctc tggtattggc tttctggggg cgggcgtcat catgcgcgaa
    19741 gggatgaatg tgcgcggact gaacactgcg gcaacgctat ggtgttcggc gggcatcggc
    19801 gtgttatgcg gcttagggca gttcaaaaat gcactggcgg cgacgatcat tattctttgt
    19861 gccaatattt tattgcgtga agcggcgcag cgtataaatc aactcccggt atccgccgag
    19921 gcagaaaaac gttatatcct gaaagtaacc tgtaataaag aagatgagag cgcggttcgt
    19981 cagtggttac tgaatatcgt aaaagaggcc gcgatctgtt tacaagggtt aggttcggtc
    20041 cccgctcagg aacagggcta taaagaaatt cgtgccgagc tcgtgggtca tgctgattat
    20101 cgtaaaacgc gagaactgat tatatccaga ataggtgata acgataatat caccgcaatt
    20161 cactggagca ttgatagtca ataatagttt tttattcaat tgcaacatta cgccaggcgt
    20221 ataaggaggg aatgatggat attcccgagt cgataaaata aaacccactc aaaatagtga
    20281 gtaagcaata acctttttta tgcatagata attctcccgg ggcattcacc ttcaaatcgt
    20341 gagtttacta ttccctgggc gtgatatgca ggaaacacta caccttaatt ttggggattc
    20401 atcatgactg acatgaacat tgaaaaccgg aaactcaatc gcccggcgtc agaaaatgat
    20461 aagcagcata aaaaagtatt tccgatcgaa gcggaagctt ttcatagccc ggaggagaca
    20521 ctggcgcggc tgaacagcca tcgtcagggc ctcacgatag aagaggccgg cgaacggttg
    20581 aaagtgtatg ggcgcaatga agtggcgcat gagcaagttc ctccggtgct ggttcagctt
    20641 ctgcaggcat tcaataaccc gtttatttac gttctgatgg cactggcagg ggtcagtttc
    20701 atcacggatt actggctccc gttacgccgt ggcgaagaga ccgatctcac cggcgtgctg
    20761 attattctga cgatggtcag tttgagcggg ttattgcgtt tctggcagga gtttcgcact
    20821 aacagagcag cacaggcgct gaaaaagatg gtgcgcacca ccgccacgat gttgcgtcgt
    20881 gggccgggca atataggcgc ggtgcaggaa gagattccca ttgaagaact ggtgccgggc
    20941 gatgtggttt ttctggccgc aggcgatctg gtgcccgccg acgtccgtct gctggcgtcg
    21001 cgcgatctct ttatcagcca gttaattctt agtggtgaat cattacccgt agaaaaatac
    21061 gatgttatgg ctgatgtggc aggtaaagac agcgagcaat tgcctgacaa agataagagc
    21121 ctgttagatt tgggcaatat ctgtctgatg ggaaccaatg taaccagcgg cagagcgcaa
    21181 gcggtcgtgg tcgcgacggg aagccgtacc tggttcggct cgctggcgaa atccattgtg
    21241 ggtacgcgta cccagacggc tttcgatcgc ggagtcaaca gcgtgagctg gctgttgata
    21301 cgctttatgc tgatcatggt gccggttgtc ctgctgatca atggtttcag taagggagac
    21361 tgggtagagg cttcgctgtt cgcgctggcg gttgcggttg ggttgacgcc ggaaatgttg
    21421 cccatgatag tcagttccaa cctggcaaaa ggcgcgattg cgatgtcgcg gcgcaaagtg
    21481 atcgtcaagc gcctgaacgc tattcaaaac ttcggcgcga tggatgtgct gtgtacagat
    21541 aaaaccggca ccttaaccca ggacaatatt tttctggagc atcatctgga tgtgagcggt
    21601 gtaaaaagca gccgggtatt gatgctggcc tggctgaata gtagcagcca gagcggcgcc
    21661 cggaatgtga tggatcgcgc catactgcgt tttggcgagg ggcgaatcgc accatcgaca
    21721 aaagcgcgct tcattaaacg cgatgaactg ccattcgact ttgtacgtcg ccgggtatcg
    21781 gtcctggtgg aggatgcgca gcatggagac agatgtctga tctgtaaagg cgccgttgaa
    21841 gagatgatga tggtagccac ccatcttcgc gaaggcgatc gtgtggtggc gctgacggaa
    21901 acacgccgcg agctgctgct ggcgaaaacc gaagattaca atgctcaggg attccgtgta
    21961 ttgctgatag cgacacgtaa gctggatggt tccgggaaca atccgacatt aagtgtggag
    22021 gatgagaccg aacttaccat cgaagggatg ctcacttttc tcgatccgcc gaaagagagc
    22081 gccggaaaag ctattgccgc gttgcgggat aacggcgtgg cggtcaaagt cctcaccggc
    22141 gataatccgg tcgtgacggc gcgtatctgt ctggaagtgg gtattgatac gcacgatatc
    22201 ctgatcggaa cccaggttga ggcgatgtcg gatgccgaac tggcgtctga agtggagaaa
    22261 cgcgcagtat tcgcccggct gacgccgtta caaaaaacgc gtattttgca agcgctacag
    22321 aaaaatggtc ataccgttgg ttttcttgga gatgggatca acgacgcgcc cgcgcttcgt
    22381 gatgcggatg tgggaatttc cgtcgatagc gccgccgata ttgctaaaga gtcatcagat
    22441 attattctgc tggaaaaaga tctcatggtg cttgaggaag gcgttatcaa agggcgggaa
    22501 acctttggca atatcattaa atatctgaat atgaccgcca gctctaattt cggcaatgtt
    22561 ttttcggtac tggtagccag cgcgtttatt ccgtttctgc cgatgctggc gattcatctg
    22621 ttgatccaga atttgatgta cgatatttcg cagttgtcgt tgccgtggga caaaatggat
    22681 aaagagttcc tgcgtaagcc gcggaaatgg gacgcgaaaa atattggtcg ttttatgcta
    22741 tggattggcc caacgtcttc tattttcgat atcacaacct ttgcgctgat gtggtacgtt
    22801 tttgcggcta ataacgtaga ggcgcaggcg ctctttcagt ccggctggtt tattgagggg
    22861 ctgctctcgc agacactggt cgtgcatatg ctaaggacgc agaaaatacc gtttatccaa
    22921 agtcgggcga cgttgccggt attattgacg accggcttga ttatggcgat aggcatttat
    22981 attccattct cacctctggg cgcgatggtt ggactggagc cgctgccgct gagctacttc
    23041 ccgtggttgg tggcgacatt attgagctac tgtctggtgg cgcaaggcat gaaacgcttt
    23101 tatatcaaac gctttggcca gtggttttaa taatgtttga ggatcgccca gatgaatcgc
    23161 tcacccgata aaatcatcgc gctgatattt ttactgatta gcctgttggt gttgtgttta
    23221 gccctctggc aaatcgtttt ctaacgaggt gacgccatgc aaaaaagagg gttggacaaa
    23281 attttttatc aggttgtcct gatagcaatc atcctgattt tactgactat ctggatacga
    23341 taagctgccg ttggcgagcc ccgcttaaaa taagaatcga tgtagttgtt ctttttatgg
    23401 cggggcgcta ttttcatggt atcccacatg agaagggcaa tatcatgaat aatcgtcgtg
    23461 gtttaaccgc cgtcctggcg acgttgatta cgttttccct gagcgctacg cctgtgctgg
    23521 cgaatccggg aaatggcaat ggcggcggac atggtaataa cgcggctaat cagggtaata
    23581 acggtaacgg acataaagga aatgccgggc aaaaaacgga acaccgtaaa aatggcggta
    23641 aaccggatca cgtcgagtcg gacattagct acgctgtcgc caggcaactg gcagtgaatt
    23701 tagggctgac gggttatcag tctttacctc cggggattgc gaaaaatctg gcgagaggaa
    23761 aaccgctgcc gccgggaatc gctaaaaaac ggtgccggcg tctatgctgg gacaattacc
    23821 ttattatccg ggctatgagt ggaaaatcgt tggggataat ctggtgctga tcgcgctcag
    23881 taccgcggtg gtcacggcga ttattaatgg cgtatttgat taagagccta tcccaccagg
    23941 cgttattggc gcagccagtt tggacacgga cagcgcgcaa aaaccggagc gtacacgtag
    24001 tacgtgaggt ttgactcgct acgctcgccc ttcgggccgc cgcaagcggc gttcaaaacg
    24061 ctaacgcgtt ttggcgagca ctgcccaggt ccaaaatggc aagtaaaata gccccaatgg
    24121 gataggctct aagcgtgttg tagtccgatg acatggcgct catctactgg ttgtaggctg
    24181 aataaacagg cgatagataa aatagcccca ttaaatgggg ctatttagcc gcttcagggc
    24241 gttatttatg cgcgttgaga atccagcagt tcattatttt ttactacttc ctgcgctttg
    24301 gtataacttt caatcagtag ctgataggcc gggaatattt tggtatatac atccgcccat
    24361 tctacggcat cttcccgatt ccaggtacgt tgcagctcag aggctaccgc cgcggtatcc
    24421 attggtacta cgcccgcctg caccacgcgg gccatcgtaa tttcctgcgc cattttactg
    24481 tacgtaccgg aggcatcaat taccgcaaat accttgtacc cttccgcgac ggcgctgatg
    24541 gctggaaaag ccatgcagac actggtaata gtaccggcga tgatcagcgt tttacggcct
    24601 gtcgctttta ccgcctgtac aaaatcggca ttatcccagg cattaatttc ccctttacgc
    24661 gcgacatatt gcgcgtgggg cgcattcgca tggatttccg gaatcagcgg accatttggt
    24721 ccctgtggta cggatgcggt agtaatgacc ggcatattgc ataaggtagc gattttagcc
    24781 agcgccgcgg cgcgcgcgcg taattccggc atcggcatgt cgccgacggt ctgaaacagg
    24841 ccactttggt ggtcaatcag cagcatgact gcgtcgttag catcaatggc agggcgttga
    24901 ccgttaaaat tcgcgggtgt agacataatt cattccttgt tgttgccttt cactgatagt
    24961 cactatcagt gttaaagtc
//
LOCUS       DAJVSD010000040        24843 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.040, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000040 DAJVSD010000000
VERSION     DAJVSD010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 24843)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24843)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24843
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.040"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(178..3381)
                     /gene="rne"
                     /locus_tag="OQP62_001368"
     CDS             complement(178..3381)
                     /gene="rne"
                     /locus_tag="OQP62_001368"
                     /EC_number="3.1.26.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E"
                     /protein_id="HCS1720958.1"
                     /translation="MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKG
                     KITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIV
                     QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLEL
                     PEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAF
                     RDYLRQDIGEILIDNPKVMEMARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIE
                     SAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQL
                     RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRL
                     SPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASY
                     LLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVRKGEETPTLSYMLPKLHEE
                     AMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSVATAKKDNVAAEQPAQP
                     GLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRKPRQNNRRDRNERRDTRD
                     NRARRDGGESRDDNRRNRRQAQQQNAEARDTRQQETAEKVKTGDEQQQTPRRERSRRR
                     NDDKRQAQQEVKALNREEQPVQETEQEERVQQVQPRRKQRQLNQKVRFTNSTVVETVD
                     TPVVVDEPRPVENVEQPVPAPRTELAKVDLPVVADIAPEQDDSVEPRDNTGMPRRSRR
                     SPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKVWIRYPIVRPQETQVVE
                     EQREADLALPQPVVAEPQVIAATVALEPQASVQAVENVAVEPQTVAEPQAPEVVKVET
                     THPEVIAAPVDEQPQLIAESDTPEAQEVIADAEPVAETADASITVAENVADVVVVEPE
                     EETKAEAAVVEHTAEETVIAPAQVVEKPQDVVCVDDHNHASAPMTRAPAPEYVPETPH
                     HSDWQRPSFHFEGKGAAGGHSATRHASAPATRPQPVE"
     gene            3955..4914
                     /gene="rluC"
                     /locus_tag="OQP62_001369"
     CDS             3955..4914
                     /gene="rluC"
                     /locus_tag="OQP62_001369"
                     /EC_number="5.4.99.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000846318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(955/2504/2580) synthase
                     RluC"
                     /protein_id="HCS1720959.1"
                     /translation="MKTETPSVKIVAIAADEAGQRIDNFLRTQLKGVPKSMIYRILRK
                     GEVRVNKKRIKPEYKLESGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHI
                     LVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSAL
                     RSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLKNILQSGERIVRVSQEGKPSET
                     RFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDQQLTEAGTG
                     LKRLFLHAAALKFTHPGTGDVMRIEAPMDKQLKRCLEVLRSKA"
     gene            complement(4997..5581)
                     /gene="maf"
                     /locus_tag="OQP62_001370"
     CDS             complement(4997..5581)
                     /gene="maf"
                     /locus_tag="OQP62_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003836743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HCS1720960.1"
                     /translation="MPRLILASTSPWRRALLEKLTIPFECAAPDVDETPMPGEAPRQL
                     VLRLAQAKAQSLAARFPNHLIIGSDQICVLDGEITGKPLTEEKARQQLAKASGSIVTF
                     YTGLALYNSASGHLQTEVEPFDVHFRHLSEAEIDDYVRKEHPLHCAGSFKSEGLGIAL
                     FERLEGRDPNTLIGLPLIALCQMLRREEMNPLNA"
     gene            5779..6300
                     /gene="yceD"
                     /locus_tag="OQP62_001371"
     CDS             5779..6300
                     /gene="yceD"
                     /locus_tag="OQP62_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001174481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA accumulation protein YceD"
                     /protein_id="HCS1720961.1"
                     /translation="MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSD
                     VECSMSFAIDNQRLAVLTGDAVVTVSLECQRCGKPFTHQVHTTYCFSPVRSDEQAEAL
                     PEAYEPIEVNEFGEIDLLATVEDEIILALPVVPVHDSEHCEVSEADMVFGELPDEAQK
                     PNPFAVLASLKRK"
     gene            6352..6525
                     /gene="rpmF"
                     /locus_tag="OQP62_001372"
     CDS             6352..6525
                     /gene="rpmF"
                     /locus_tag="OQP62_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HCS1720962.1"
                     /translation="MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHIT
                     ADGYYRGRKVIAK"
     gene            6659..7738
                     /gene="plsX"
                     /locus_tag="OQP62_001373"
     CDS             6659..7738
                     /gene="plsX"
                     /locus_tag="OQP62_001373"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HCS1720963.1"
                     /translation="MTRLTLALDVMGGDFGPSVTVPAALQALNANSQLTLLLVGNPDI
                     ITPLLAKADFEQRSRLQIIPAQSVIASDARPSQAIRASRGTSMRVALELVKEGRAEAC
                     VSAGNTGALMGLAKLLLKPLEGIERPALVTVLPHQQKGKTVVLDLGANVDCDSTMLVQ
                     FAVMGAVLAEEVVGIKNPRVALLNIGEEETKGLDSIREASLMLKTVPTINYIGYLEAN
                     ELLTGKTDVLVCDGFTGNVTLKTMEGVVRMFLSLLKSQGEGKKRSWWLLLLKRWLQKS
                     LTRRFSHLNPDQYNGACLLGLRGTVIKSHGAANQRAFAVAIEQAVQAVQRQVPQRIAA
                     RLESVYPAGFEPLDDGKGVNLRAHR"
     gene            7818..8771
                     /gene="fabH"
                     /locus_tag="OQP62_001374"
     CDS             7818..8771
                     /gene="fabH"
                     /locus_tag="OQP62_001374"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HCS1720964.1"
                     /translation="MYTKIIGTGSYLPEQVRTNADLEKMVETSDEWIVTRTGIRERHI
                     AAPNETVATMGFTAANRAIEMAGIDKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG
                     CPAFDVAAACAGFTYALSIADQYVKSGVVKHALVVGSDVLARTCDPGDRGTIIIFGDG
                     AGAAVLSASEEPGIISTHLHADGRYGELLTLPNADRVNPDNPIYLTMAGNEVFKVAVT
                     ELAHIVDETLAANNLDRSELDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTS
                     AASVPCALDEAVRDGRIKAGQLVLLEAFGGGFTWGSALIRF"
     gene            8787..9716
                     /gene="fabD"
                     /locus_tag="OQP62_001375"
     CDS             8787..9716
                     /gene="fabD"
                     /locus_tag="OQP62_001375"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HCS1720965.1"
                     /translation="MTQFAFVFPGQGSQSVGMLAEMAANYPIVEETFAEASAALGYDL
                     WALTQQGPAEELNKTWQTQPALLTASVALWRVWQQQGGKMPALMAGHSLGEYSALVCA
                     GVINFADAVRLVEMRGKFMQEAVPEGTGGMSAIIGLDDASIAKACEESAEGQVVSPVN
                     FNSPGQVVIAGHKEAVERAGAACKAAGAKRALPLPVSVPSHCALMKPTADKLAVELAK
                     ITFSAPTVPVVNNVDVKCETDAAAIRDALVRQLYNPVQWTKSVEFIAAQGVEHLYEVG
                     PGKVLTGLTKRIVDTLTASALNEPAALSAALTQ"
     gene            9729..10463
                     /gene="fabG"
                     /locus_tag="OQP62_001376"
     CDS             9729..10463
                     /gene="fabG"
                     /locus_tag="OQP62_001376"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HCS1720966.1"
                     /translation="MSFEGKIALVTGASRGIGRAIAETLVARGAKVIGTATSENGAKN
                     ISDYLGANGKGLMLNVTDPASIESVLENIRAEFGEVDILVNNAGITRDNLLMRMKDDE
                     WNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMGNAGQANYAAAKAGLIG
                     FSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIASA
                     VAFLASDEASYITGETLHVNGGMYMV"
     gene            10619..10855
                     /gene="acpP"
                     /locus_tag="OQP62_001377"
     CDS             10619..10855
                     /gene="acpP"
                     /locus_tag="OQP62_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HCS1720967.1"
                     /translation="MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELV
                     MALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA"
     gene            10941..12182
                     /gene="fabF"
                     /locus_tag="OQP62_001378"
     CDS             10941..12182
                     /gene="fabF"
                     /locus_tag="OQP62_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HCS1720968.1"
                     /translation="MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTS
                     AYATKFAGLVKDFNCDDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEVTEENASRIG
                     AAIGSGIGGLGLIEENHSSLVKGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISI
                     ATACTSGVHNIGHAARIIAYGDADAMVAGGAEKASTPLGVGGFGAARALSTRNDNPQA
                     ASRPWDKERDGFVLGDGAGMLVLEEYEHAKARSAKIYAEIVGFGMSSDAYHMTSPPEN
                     GAGAALAMVNALRDAAIEPAQIGYVNAHGTSTPAGDKAETQAVKSVFGDAASRVMVSS
                     TKSMTGHLLGAAGAVESIFSILALRDQAIPPTINLDNPDEGCDLDFVPHEARQVSDLE
                     YALCNSFGFGGTNGSLIFKKI"
     gene            12306..13115
                     /gene="pabC"
                     /locus_tag="OQP62_001379"
     CDS             12306..13115
                     /gene="pabC"
                     /locus_tag="OQP62_001379"
                     /EC_number="4.1.3.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate lyase"
                     /protein_id="HCS1720969.1"
                     /translation="MFLINGHAQDQLAVSDRATQFGDGSFTTARIVDGNICHLEAHLQ
                     RLQVACEKLRIAFSHWSTLRQEMTMLATGHDSGVLKVIISRGSGGRGYSAMNCQAATR
                     ILSVSAYPAYYSQWRKQGITLTLSPIPLGRNPYLAGLKHLNRLEQVLIRSHLEQTDAD
                     EALVLDSEGWVTECCAANLFWRTGDIVFTPRLDQAGVNGIMRQFCLRQLAQSPFQVLE
                     VQAREEAVRQADEIIICNALMPIIPIRAYHGTSYSSRTLFQFLAPFCEHPN"
     gene            13118..14134
                     /gene="yceG"
                     /locus_tag="OQP62_001380"
     CDS             13118..14134
                     /gene="yceG"
                     /locus_tag="OQP62_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein YceG"
                     /protein_id="HCS1720970.1"
                     /translation="MKKLSGVFLLLLVVLGIATGVGMWKVRHLANSTLLIKNETIFTL
                     KAGTGRLALGDQLYDEKIINRPRVFQWLLRVEPELSHFKAGTYRFTPGMTVREMLELL
                     ESGKEAQFPLRFVEGMRLSDYLKQLREAPYIRHTLPDDDYATVAQALKLAHPEWVEGW
                     FWPDTWMYTANTSDVAILKRAHQKMVKAVDTVWKGRAEGLPYKDQNQLVTMASIIEKE
                     TAVASERDQVASVFINRLRIGMRLQTDPTVIYGMGTSYNGNLSRADLEKPTAYNTYTI
                     TGLPPGPIASPSEASLQAAAHPAKTPYLYFVADGKGGHTFNTNLASHNRSVQEKVLKE
                     KNGQ"
     gene            14124..14765
                     /locus_tag="OQP62_001381"
     CDS             14124..14765
                     /locus_tag="OQP62_001381"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HCS1720971.1"
                     /translation="MGSNYIVIEGLEGAGKTTARDVVVETLEQLGIRNMIFTREPGGT
                     QLAEKLRSLVLDIRSVGDEVITDKAEVLMFYAARVQLVETVIKPALAQGVWVIGDRHD
                     LSTQAYQGGGRGIDQTMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGDLDRIE
                     QESFDFFNRTRARYLELAAQDSRIRTIDATQPLDAVMRDIRATVTKWVQEQAA"
     gene            14762..15766
                     /gene="holB"
                     /locus_tag="OQP62_001382"
     CDS             14762..15766
                     /gene="holB"
                     /locus_tag="OQP62_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HCS1720972.1"
                     /translation="MKWYPWLRPAYEKLVESYQAGRGHHALLIQALPGMGDEALCYAL
                     SRYLLCQQPEGHKSCGHCRGCQLMQAGTHPDYYTLTPDKGKSSLGVDAVREVSEKLYE
                     HSRLGGAKVVWIADAALLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRCR
                     LHHLAPPSESYAMSWLSREVTASQEALLTALRLNAGSPGAALALLQSERWAQREALCQ
                     ALMDSLHTGDWYALLTALNHEQAPARLHWLATLLVDALKRQHGASYLTNVDADAVVAA
                     LAGPLSPARIQAILNDVCHCRDQLLHVTGLNRELVLTDLILRIEHYLQPGTLLPVPHL
                     "
     gene            15777..16574
                     /locus_tag="OQP62_001383"
     CDS             15777..16574
                     /locus_tag="OQP62_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS1720973.1"
                     /translation="MFLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTL
                     PGYRHMRELVGKRDNVVFSCGVHPLNQDEVYDVEELRLLAAEDDVVAMGETGLDYFYT
                     PETKIRQQASFIHHIQIGRELHKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTED
                     RETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKE
                     NQPAMVRDVAEYMAVLKGVAVEELAQITTDNFARLFHIDASRLSSIR"
     gene            16869..18302
                     /gene="ptsG"
                     /locus_tag="OQP62_001384"
     CDS             16869..18302
                     /gene="ptsG"
                     /locus_tag="OQP62_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIBC"
                     /protein_id="HCS1720974.1"
                     /translation="MFKNAFTNLQKAGKSLMLPVSVLPIAGILLGVGSANFSWLPAVV
                     SHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLH
                     LPAEEIAAKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLA
                     AIFTGVVLSFVWPPVGTAIQAFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPF
                     QMQIGEYTNAAGQVFHGDIPRYMAGDPTAGMLSGGFLFKMYGLPAAAIAIWHSAKPEN
                     RAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDG
                     TSFSHGLIDFIVLSGNSSKLWLFPIVGAGYAIVYYTVFRVLIKALDLKTPGREDSTDD
                     AKAGATSEMAPALIAAFGGKENITNLDACITRLRVSVADVAKVDQAGLKKLGAAGVVV
                     AGSGVQAIFGTKSDNLKTEMDEYIRNS"
     gene            complement(18387..20562)
                     /gene="fhuE"
                     /locus_tag="OQP62_001385"
                     /pseudo
     CDS             complement(18387..20562)
                     /gene="fhuE"
                     /locus_tag="OQP62_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460174.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ferric-rhodotorulic acid/ferric-coprogen
                     receptor FhuE"
     gene            20904..21263
                     /gene="hinT"
                     /locus_tag="OQP62_001386"
     CDS             20904..21263
                     /gene="hinT"
                     /locus_tag="OQP62_001386"
                     /EC_number="3.9.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine nucleoside phosphoramidase"
                     /protein_id="HCS1720975.1"
                     /translation="MAEETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIP
                     NILIPTVNDVTAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHM
                     HLLGGRPLGPMLAHKGL"
     gene            21266..21640
                     /locus_tag="OQP62_001387"
     CDS             21266..21640
                     /locus_tag="OQP62_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HCS1720976.1"
                     /translation="MIKGCIAVSLGLLLLTGCRSHPEIPVSDAQSLVMESAVLAAGVT
                     AEPPELTASDIQPSASSRVYNERQEPITVHYRFYWYDARGLEMHPLEAPRSVTIPARS
                     SVTLFGSANYLGAHKVRLYLYL"
     gene            21654..22292
                     /gene="lpoB"
                     /locus_tag="OQP62_001388"
     CDS             21654..22292
                     /gene="lpoB"
                     /locus_tag="OQP62_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HCS1720977.1"
                     /translation="MTKMHRYAAIAALAIFLSGCMAQRQPAPVEEVKPAPEQPAQPPQ
                     PPVVPSVPTIPQQPGPIEHEDQTGQPAPKVRHYDWNGAMQPLVSKMLQADGVTARSVL
                     LVDSVNNRTNGSLNANEATETLRNALANNGKFTLVSVQQLAMAKQQLGLSPQDSLGTR
                     SKAIGIARNVGAQYVLYSSASGNVNAPALQMQLMLVQTGEIIWSGKGAVQQQ"
     gene            22273..23097
                     /gene="thiK"
                     /locus_tag="OQP62_001389"
     CDS             22273..23097
                     /gene="thiK"
                     /locus_tag="OQP62_001389"
                     /EC_number="2.7.1.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine kinase"
                     /protein_id="HCS1720978.1"
                     /translation="MRSNNNNPLTRDEILSRYFPQYRPAVAASQGLSGGSCIIAHDTH
                     RIVLRRHHDPDAPPAHFLRHHRALSQLPASLAPRALFYTPGWMAVEYLHGVVNSALPD
                     ADELAALLYHLHQQPRFGWRIALSPLLAQYWSCCDPARRTPFWLRRLKQLQKNGEPRP
                     LRLAPLHMDVHGDNIVLTSAGLRLIDWEYAGDGDIALELAAVWVEDERQHRQLADAYA
                     ARARIDARQLWRQIRLWHPWVIMLKAGWFEYRWRQTGEQQFIRLADETWRQLRMKG"
     gene            23108..24133
                     /gene="nagZ"
                     /locus_tag="OQP62_001390"
     CDS             23108..24133
                     /gene="nagZ"
                     /locus_tag="OQP62_001390"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HCS1720979.1"
                     /translation="MGPVMLNVEGCELDAEEREILAHPLVGGLILFTRNYHDPEQLRE
                     LVRQIRAASRNHLVVAVDQEGGRVQRFREGFTRLPAAQSFFALHGLEEGGRLAQEAGW
                     LMASEMIAMDIDISFAPVLDVGHISAAIGERSYHADPAKALAMATRFIDGMHDAGMKT
                     TGKHFPGHGAVTADSHKETPCDPRPETDIRGKDMSVFRALISENKLDAIMPAHVIYRA
                     IDPRPASGSPYWLKTVLRQELGFDGVIFSDDLSMEGAAIMGSYAERAQASLDAGCDMI
                     LVCNNRKGAVSVLDNLSPIKAERVTRLYHKGSFSRRELMDSARWKTASAQLNQLHERW
                     QEEKAGH"
     gene            24158..24700
                     /locus_tag="OQP62_001391"
     CDS             24158..24700
                     /locus_tag="OQP62_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS1720980.1"
                     /translation="MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLVSYSTRHPKHDMQ
                     HLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVVFNPNLFPYENMEGKI
                     DRPEEYADIATKCVTNFREKNRDRCLVILSRHDEALDSQRSAQALHPFYEIVWDEEQT
                     HKFKNISPHLQRIKAFKTLG"
BASE COUNT         5528 a         6320 c         7048 g         5947 t
ORIGIN      
        1 tcgttattga gttagtggtc atattgtcgc gcccgtagcg acgccatccg tacgtattat
       61 cccgcccgat ctcataaacg cctggagtga ctaaaagacg ccatggggtg aggcatcgcc
      121 ctgtaagagg cataaaaaaa agccgacctg gcggtcggct ttgtatcagc atttacatca
      181 ttctaccggc tgtgggcgtg tcgccggggc gctggcgtga cgtgtggcgc tgtgtccgcc
      241 tgctgcgcct ttaccttcaa agtggaagga agggcgctgc cagtcgctat ggtgcggggt
      301 ttccggcaca tattccggcg ctggcgcacg cgtcatcggc gcgctggcgt ggttatgatc
      361 gtcaacgcag acaacgtcct gcggcttttc caccacctgg gccggtgcga taacggtttc
      421 ttctgccgtg tgctccacaa cagccgcttc cgcttttgtc tcttcttctg gctcgacaac
      481 gacaacatca gctacgtttt cagccaccgt aatggacgcg tcggcggttt ctgctaccgg
      541 ttcggcgtca gcaataacct cttgcgcttc cggcgtatcg ctttcggcaa tcagttgcgg
      601 ctgttcatca accggcgcgg caatcacttc cggatgcgtt gtctcgacct tgacgacttc
      661 cggcgcctgt ggttcggcga cggtctgcgg ctcaacggca acgttttcta ccgcctgtac
      721 cgacgcttgt ggttcgagcg ctacggtcgc agcgataacc tgcggttcag cgacaaccgg
      781 ttgtggcagc gccagatctg cttcacgctg ctcttcaaca acctgcgttt cctgaggacg
      841 gacaatcggg tagcggatcc agactttacc ggacgccatt tctggcgacg cgcaggcgac
      901 ggttaacggc atcggcgatt gtgtcgggta gcgctcgtca cgatagcgac ggcgacgctg
      961 accgcttacg cgcaggtggc gcggagaacg gcgggagcga cgcggcatac cggtattatc
     1021 gcgaggttct acgctatcat cctgctccgg cgcgatatcg gcaacgacag gtaaatcaac
     1081 tttcgccagc tcggtacgcg gcgctggaac gggctgttca acgttttcaa ccgggcgtgg
     1141 ttcgtcgacg acgaccggcg tgtcaaccgt ttcaaccact gtgctgttgg taaagcggac
     1201 tttctgatta agctgacgtt gcttacggcg cggctgaacc tgctgaacgc gttcttcctg
     1261 ctcggtctcc tggacaggct gttcttcgcg gttaagcgct tttacttcct gctgcgcctg
     1321 gcgtttgtca tcattgcggc ggcggctgcg ttcgcgacgc ggcgtctgtt gctgctcatc
     1381 gccggttttc actttttccg ccgtttcctg ctggcgggta tcgcgcgctt ccgcattttg
     1441 ctgctgcgcc tggcgacggt tacgacgatt atcgtcgcgg ctctcgccgc cgtcacgtct
     1501 ggcacggtta tcacgggtgt cgcggcgttc gttacgatcg cgacggttgt tctgtcgtgg
     1561 cttgcgacga tcctgctgac gctccgcttt ttcttccgct ttcggcgcgg ctgtttcgac
     1621 ggttttcgtt tcttcaccgc tgaacagttg tttcagcgcg ttaaggaagc ggctaaacag
     1681 acccggctgg gcaggctgct cggcggcaac attatccttt ttcgccgtgg caacgctaac
     1741 cgccggttcg acaggcgtcg gcgccggagg cacatctggc atagcgaatg tcgccagcgc
     1801 aggctgttcc gggcgtttac gctcggcgta ctcttcttca gaaggcagcg ccatcgcttc
     1861 ttcgtgcagc ttcggcagca tgtagctcag ggtcggcgtt tcttcccctt tgcgtacgcg
     1921 tagcacggaa tagtgcggcg tttccatctg atcgttcggg acgatgacac agcggacgcc
     1981 atcctgacgc gtctcaatag cgttaactgc cgtccgtttt tcgttaagca gataagaggc
     2041 gatcggcacc ggaacaatgg catggacttc ctgcgtattc tctttcagcg cttcttcttc
     2101 aatcaggcgc agaatggaca gcgacagaga ttcgttatcg cgcacggtgc cggtaccgct
     2161 acagcgcgga cacacgtgat ggctggattc gcccagcgac gggctcaggc gctgacgcga
     2221 catttcgagc aggccgaagc gggaaatatg gctaatctga atacgcgccc ggtcctgacg
     2281 caccgcttca cgcaggcggt tttctaccgc gcgctggtga cgtaccggcg tcatatcgat
     2341 aaagtcgata acgatcaggc cgcccaggtc gcgcagacgc aactggcggg caatctcatc
     2401 ggccgcttcg agattggtgt tgaacgcggt ttcttcgata tcgccgccgc gagttgcgcg
     2461 ggcggagttg atatcgatag cggttaacgc ttcggtgctg tcaatgacga tggagccgcc
     2521 ggagggcagg cgcacttcac gctggaacgc agactcgatc tgcgattcga tctggtaatg
     2581 gctgaacaac gggatttcac cggtgtatag cttaattttg ctgctaaaat ccgggcggcc
     2641 caacgcggcg atatgctgac gcgccatttc catcactttt ggattgtcga ttaggatttc
     2701 accgatatcc tgacgcagat agtcgcgaaa cgcgcgtacg atgacgttgc tttcctgatg
     2761 gatcaggaac ggcgcgggac ggctttcagc ggctttctga atggcttccc agtgtttcag
     2821 gcggaagctt aaatcccact gcaacgcttc ggcggattta cccacgcccg cggtacgtac
     2881 gataagcccc atcccttcag gaagttccag gctggccaac gcttctttta actcggtacg
     2941 atcgtcgcct tcaatgcgac gggagatacc acccgcgcgc gggttattcg gcatcagtac
     3001 caggtagctg cccgccagac tgataaaggt ggttaacgcc gcgcctttgt tgccgcgctc
     3061 ttctttatcg atttgaacaa tgacttcctg gccttcgcgt aacacgtctt tgatgttcgg
     3121 gcgaccatga gcgctgtagt tagcggggaa atattcgcgg gcaatttctt ttaacgggag
     3181 gaaaccgtgg cgttctgcgc cgtaatcaac aaaagccgct tccaggctcg gttcaatacg
     3241 ggtaattttg cctttataga tgttcgcttt tttctgctcg tgtccggggc tttctatatc
     3301 cagatcgtac agacgctgcc catctacaag ggcgacgcgc aactcttcct gctgagtcgc
     3361 gttgattaac attcttttca tcgtaactta ctcattattc ttacgttgac gactaagctg
     3421 cgggcatggt gacgccttac cgggcatgaa ccgatggcct cgtgactatt tcgcgtcgcc
     3481 aacctcacgg ttatcgtcag ctcaaagagg cgcagagtgt cggttgcctg tatttcatac
     3541 ggaaacacag cgcaattatc agggaagcag cctgggcatt actctccaga gaagatccta
     3601 tctaccggta aggactgcaa cccgcagccc gctaactgtc tgaaaaatca atacgtctta
     3661 cgccattgct gcgttgatga tcggtcagac aaaatgggtt attccgctaa actttttgtt
     3721 ttaacaagtt tcggtgcgga aaccgcatca ttattccact gctaaccttg ttatagcaag
     3781 atgactttta ccatttatca cccgcttact cacagttttt tcaccagcgc gagccaatcg
     3841 ctttaataac cagcaaaacc gcagtgaaaa atgttcatcc actggcgtag acgtctctat
     3901 aagcatagaa aaatgtgtgg cgcgaatctc acaggctatt tagaatcgcc ccccatgaaa
     3961 acagaaacgc catccgtaaa aattgttgct atcgccgctg acgaagcggg gcaacgcatt
     4021 gataactttt tgcgcaccca actgaaaggg gtaccaaaaa gtatgattta tcgcatcttg
     4081 cgtaaaggcg aggtgcgggt gaacaaaaaa cgcattaaac cggaatacaa actggaatcg
     4141 ggcgatgaag tccgcattcc gccggttcgc gttgctgagc gcgaagaaga ggctgtgtcg
     4201 ccgcatttgc aaaaagtggc ggcgttggcg gacgtcattt tgtatgaaga cgaccatatt
     4261 ctggtgctga ataagccttc cggcaccgcc gtacacggtg ggagcgggtt aagtttcggc
     4321 gtcatcgaag ggctgcgggc gttgcgtccg gaagcgcgat tcctggaact ggtgcatcgt
     4381 cttgaccgcg atacttccgg cgtgctgttg gtggcgaaaa aacgctccgc gctgcgttcg
     4441 ctgcatgagc aactgcgcga aaagggaatg cagaaagatt atctggcgct ggtgcgcggc
     4501 cagtggcaat cacacgttaa aaccgtacag gcgccattat taaagaacat tctgcaaagc
     4561 ggcgaacgca ttgtccgcgt gagccaggaa ggcaaacctt cagaaacgcg cttcaaggtg
     4621 gaagagcgtt atgccttcgc cacgctggtg cgctgtagcc cggtcacggg ccgtacgcat
     4681 cagattcgcg tacataccca atatgccggt caccctattg cgttcgacga tcgctacggc
     4741 gaccgtgagt ttgatcaaca gcttaccgaa gcgggaaccg gtcttaaacg tctctttctg
     4801 cacgccgcgg cgctgaagtt cacgcatccg ggaacgggcg atgtcatgcg cattgaagcg
     4861 ccaatggata agcaattgaa gcgctgcctt gaggtattac gtagtaaagc ctgatgcgcg
     4921 ttgcttatca ggcctacaat cgtgtgatgc accgtaggcc tgataagacg catcgcgtcg
     4981 ccatcaggca gattaatcag gcattcagcg ggttcatctc ttcccgtcgc agcatctggc
     5041 acagggcaat aagcggcaag ccgatcagcg tgttcggatc gcggccctct aagcgctcaa
     5101 ataatgcaat gcctaaacct tcgcttttaa aacttcccgc gcagtgcagc ggatgctctt
     5161 tacggacata gtcgtctatt tccgcttcgc ttaaatggcg aaagtgaacg tcaaaaggct
     5221 ccacttcggt ttgtaagtgc ccggaggcgg agttatacag tgccagtccg gtataaaacg
     5281 tcacaatact tccgctggct ttggctaatt gctgacgcgc tttttcttcc gtcagcggtt
     5341 tgccggtgat ttcgccgtcc agaacacaaa tttggtcgga gccaataatc aaatgattcg
     5401 ggaaacgcgc ggcgagcgat tgcgccttag cctgcgccag ccgcagcacc aactgacgcg
     5461 gcgcttcgcc cggcatgggg gtttcatcaa catccggcgc ggcgcattcg aaaggaatcg
     5521 tcagcttttc cagcagcgcg cgacgccagg gagaggtaga cgcaaggatg agacggggca
     5581 tattttttcc ctcagatata gcgtaatgat gagagccatc ttaaactatg ctcttcggtc
     5641 ttcaagcctg tcatactgac tcgtcttgag cgaaaataag tctgtaaccc gcaatgtgtg
     5701 cgaattattg gcaaaaggca accgcaggct gcctttttct ttgactatat gacgttacga
     5761 agttaatatg cgcgccctat gcaaaaggta aaattacccc tgactcttga tccggttcgt
     5821 accgctcaaa aacgccttga ttaccagggt atctataccc ccgatcaggt tgagcgcgtt
     5881 gccgaatctg tagtcagtgt ggacagtgat gtggaatgct ccatgtcgtt cgctatcgat
     5941 aaccagcgtc tcgccgtttt gactggcgat gcggtcgtta cggtgtcgct cgaatgccag
     6001 cgttgcggga aaccgtttac ccatcaggtt cacacaacgt attgttttag ccctgtccgt
     6061 tccgacgagc aggctgaagc actgccggaa gcgtatgagc cgattgaggt aaacgaattc
     6121 ggcgaaatcg atctgctggc gacggttgaa gatgaaatca tcctcgcctt gccggtagtt
     6181 ccggtgcatg attctgaaca ctgtgaagtg tccgaggcgg acatggtctt tggcgaactg
     6241 cctgatgaag cgcaaaagcc aaacccattt gccgtattag ccagcttaaa gcgtaagtaa
     6301 taggtcttcc ccgcggacgc agggataaac cgtaattgag gagtaaggtc catggccgta
     6361 caacagaata aaccaacccg ttccaaacgt ggcatgcgtc gttcccatga cgctctgacc
     6421 gcagtcacca gcctgtctgt agacaaaact tctggtgaaa aacacctgcg tcaccacatc
     6481 actgccgacg gttactaccg cggccgtaag gtcatcgcta agtaatcgcg cgatactcga
     6541 tgccttttgc atcacaggcg tgcctgtggt gtaaaagccg aagagtacaa gcgtgataaa
     6601 gcttagtgag gatttctccg cgtaagcgga gaacaccgaa ccaggcagcg acgatacctt
     6661 gacacgtcta accctggcgt tagatgtcat ggggggcgat tttggtcctt ccgtgacggt
     6721 gcctgcagca ttgcaggcac tgaacgctaa ttcgcagctc actcttcttt tagtcgggaa
     6781 tcccgatatt atcacgccat tacttgccaa agctgacttt gaacaacgtt cgcgtctgca
     6841 gattatccct gcacagtcag ttattgccag tgatgcccgg ccttcgcagg cgatccgcgc
     6901 cagtcgcggg acatccatgc gtgtggcctt ggagcttgtg aaagaaggcc gagccgaagc
     6961 ttgcgttagc gccggtaata ccggggcgct gatggggctg gcgaaattat tgctcaagcc
     7021 tcttgagggg attgagcgtc cggcgttggt gacggtatta ccgcaccagc aaaagggcaa
     7081 aacggtagtg cttgatttgg gggccaacgt cgattgcgac agtaccatgc tggtgcagtt
     7141 tgccgtgatg ggcgccgttt tggcggaaga ggtcgtcggg atcaaaaatc cccgcgtggc
     7201 gctactcaat atcggggaag aagaaaccaa aggcctcgac agtattcgcg aagcctcttt
     7261 aatgttaaaa acagtcccaa ccatcaatta catcggctac cttgaggcga atgagttact
     7321 gacgggaaaa accgatgtac tggtgtgtga cggctttaca ggcaatgtca cgcttaaaac
     7381 gatggagggg gttgtcagaa tgttcctttc actgctgaaa tcacagggcg aggggaaaaa
     7441 acggtcgtgg tggctgctgt tattaaaacg ttggttacaa aaaagcctga cgaggcgatt
     7501 cagtcacctc aaccccgacc agtataatgg cgcctgtctg ttaggattgc gcggcacggt
     7561 gataaaaagt catggtgcgg ccaatcagcg agcatttgca gtcgcgattg aacaggcagt
     7621 gcaggcggtg cagcgacaag ttcctcagcg aattgccgct cgcctggaat ctgtataccc
     7681 agccggattt gaaccgctgg acgatggcaa aggcgtaaac ctgcgggcgc acagataata
     7741 tcgctgtctc cccggcgccg ccagcgtgcc agacgtttac aggtaacggt atataaccga
     7801 aaagtgactg agcgtacatg tatacgaaga ttattggtac tggcagctat ctgcccgaac
     7861 aagtgcggac taacgccgat ttggaaaaaa tggttgagac ctctgacgag tggattgtca
     7921 ctcgtacagg tattcgtgaa cgccatatcg ccgcgccgaa tgaaactgtc gcgacgatgg
     7981 gctttaccgc tgcgaatcgc gcgattgaga tggcggggat cgataaagac caaattggct
     8041 tgattgtggt agcgaccaca tcagcaacgc atgcatttcc aagcgcggca tgtcagattc
     8101 aaagtatgct cggtattaaa ggttgcccgg cgtttgatgt cgcggcagcg tgcgcaggtt
     8161 tcacctacgc gttaagtatc gccgaccagt acgttaaatc cggcgtggtt aaacacgcgc
     8221 tggtggtcgg ttccgatgta ttagcccgca cttgcgatcc tggcgatcgc ggtacgatca
     8281 ttattttcgg cgatggcgca ggcgcggccg tactgagcgc ttctgaagaa ccgggtatta
     8341 tctccactca tcttcatgcc gatggccgtt acggtgaatt actgaccctg ccgaatgccg
     8401 atcgtgtaaa tccggataac ccgatttacc tgacgatggc gggtaatgaa gtctttaaag
     8461 tggcggtcac tgaactggcg catattgtcg atgagacgct ggcggctaat aacctggatc
     8521 gctcagaact cgattggctg gtgccgcatc aggctaacct gcgtatcatt agcgcgacag
     8581 cgaaaaaact cggcatgtcg atggacaatg tcgtcgtcac gctggacagg cacggcaata
     8641 cctccgcggc ttctgtgccg tgcgcgctgg atgaagccgt gcgtgacggg cgaattaaag
     8701 ccggtcagct ggtattgctt gaagccttcg ggggtggatt cacctggggc tccgcgctga
     8761 ttcgtttcta gtataaggat ttaaacatga cgcaatttgc atttgtgttc cccggtcagg
     8821 gttctcagag cgttgggatg ttggccgaga tggcggcaaa ttaccctatc gtagaagaaa
     8881 cgtttgctga agcttctgcg gctctgggat atgatctgtg ggcgctcacc cagcaaggtc
     8941 cagcggaaga actgaataaa acttggcaga cgcagccggc gctattaacc gcttccgtcg
     9001 cgctttggcg cgtttggcag cagcagggcg gtaaaatgcc tgcgttaatg gcaggtcaca
     9061 gcctgggcga atattccgcg ctggtttgcg ctggcgtcat caactttgct gatgccgttc
     9121 gtctggtgga aatgcgcggt aaattcatgc aggaagcggt tccggaaggt actggcggca
     9181 tgtctgcgat catcggtctg gatgatgcct ctattgctaa agcctgtgaa gaatctgccg
     9241 aagggcaggt tgtttcgccg gttaacttta actcgccggg acaggtggtt atcgccgggc
     9301 ataaagaggc ggtagaacgc gcgggcgcag cctgtaaagc cgctggcgcg aaacgcgcgc
     9361 tgccgctgcc ggtgagcgtg ccgtcgcact gcgcgctgat gaaaccaacg gcagataagc
     9421 tggcggttga attagccaaa attaccttta gcgcgccaac ggtgccggta gtaaacaacg
     9481 ttgacgtgaa atgtgaaacc gatgccgccg ctatccgcga tgcgctggtt cgccagttgt
     9541 acaatccggt acagtggacg aagagcgtgg aatttatcgc ggcgcagggc gttgaacatc
     9601 tttatgaagt gggtccaggt aaagtcctca ctggtctgac gaaacgtatt gtcgacaccc
     9661 tgacagcgtc ggcgctgaac gagccggcgg cgctgtctgc ggcacttacg caataaaaga
     9721 ggaaaaccat gagctttgaa ggaaagattg cgctggtgac tggtgcaagc cgtggcatag
     9781 gccgcgcaat tgcagagact ctcgttgccc gcggcgcgaa agttatcggg actgcgacca
     9841 gtgaaaatgg tgcgaagaac attagcgact atttaggtgc taacgggaaa ggtttgatgt
     9901 tgaatgtgac cgatcctgca tctattgaat ctgttctgga aaatattcgc gcagaatttg
     9961 gtgaagtgga tatcctggtt aataatgccg gtatcactcg tgataatctg ttgatgcgaa
    10021 tgaaagatga tgagtggaac gatattatcg aaaccaattt atcatccgtt ttccgcctgt
    10081 caaaagcggt aatgcgcgct atgatgaaaa agcgttgtgg tcgcattatc actattggtt
    10141 ctgtggttgg taccatggga aatgcaggtc aggcaaacta cgctgcggcg aaagcgggcc
    10201 tgatcggttt cagtaaatca ctggcgcgtg aagttgcgtc ccgtggtatt actgtcaatg
    10261 ttgtggctcc gggttttatt gaaacggaca tgacgcgtgc gctgtctgac gatcagcgtg
    10321 cgggtatcct ggcgcaggtg cctgcgggtc gcctcggcgg cgctcaggaa atcgccagtg
    10381 cggttgcatt tttagcctct gacgaagcga gttacatcac tggtgagact ctgcacgtca
    10441 acggcggaat gtacatggtt taatcacgat tgaaaaatat ttgcgttatt agggcgaaag
    10501 gccgcaaaat aacgtaaaat cgtggtaaga cctgccggga tttagttgca aatttttcaa
    10561 cattttatac actacgaaaa ccatcgcgaa agcgagtttt gataggaaat ttaagagtat
    10621 gagcactatc gaagaacgcg ttaagaaaat tatcggcgaa cagctgggcg ttaagcagga
    10681 agaagtaacc aacaatgctt ctttcgttga agacctgggc gcagattctc ttgacaccgt
    10741 tgagctggta atggctctgg aagaagagtt tgatactgag attccggacg aagaagctga
    10801 gaaaatcacc accgttcagg ctgccattga ttacatcaac ggccaccagg cgtaagtgaa
    10861 catctccagg cggtcgttcg accgcctgag ttttatcttt ttgtcccact agaatcattt
    10921 tccctccctg gaggacaacc gtgtctaagc gtcgtgtagt tgtgaccgga cttggcatgt
    10981 tgtctcctgt cggcaatacc gtagagtcta cctggaaagc tctccttgcc ggtcagagtg
    11041 gcatcagcct gatcgaccat ttcgatacta gcgcctatgc aacgaaattt gctggcttag
    11101 taaaggattt taactgtgat gacattatct cgcgcaaaga acagcgcaag atggatgcct
    11161 tcattcaata tggaattgtc gctggcgtac aggccatgca ggattctggc cttgaagtga
    11221 cggaagagaa cgcaagccgt attggcgccg ctatcggctc cggtatcggt ggtctcggtc
    11281 tgatcgaaga aaaccacagt tcgctggtaa aaggcggacc gcgtaagatt agcccgttct
    11341 ttgtcccgtc gacgattgtt aacatggtag caggccatct gactatcatg tatggcctgc
    11401 gtgggccaag catctctatt gcgactgcct gtacttcagg cgtgcataac atcggccatg
    11461 ccgcgcgtat catcgcctat ggtgatgcgg acgcgatggt ggcaggtggc gcagaaaaag
    11521 ccagtacgcc gctgggcgta ggtggttttg gcgcagcgcg cgcgctgtcg acccgcaacg
    11581 ataacccaca ggcggcgagc cgtccgtggg ataaagaacg cgatggtttt gtactgggcg
    11641 acggtgccgg tatgttggtg cttgaagagt acgaacatgc aaaagcgcgt agtgcgaaaa
    11701 tctatgctga aatcgtcggc tttggtatga gcagcgatgc ttaccatatg acgtcgccgc
    11761 cggaaaatgg cgcaggcgct gcgctggcga tggttaacgc gttgcgtgat gccgcgattg
    11821 agcctgctca gattggctac gtcaacgcgc acggcacgtc gacgcctgcc ggcgacaaag
    11881 ctgagacgca ggcggttaag tcagtctttg gcgatgctgc aagccgagtg atggtgagct
    11941 cgaccaaatc gatgaccggc catctgttgg gcgccgcagg cgcagtagag tctattttct
    12001 ctattctggc gctacgcgat caggccattc cgccaaccat taatctggat aacccggatg
    12061 aaggttgcga tctggacttc gtgccgcatg aagcgcgcca ggtcagcgat ctggagtacg
    12121 cgctgtgtaa ctcctttggc tttggcggaa ctaacggttc cttgatcttt aaaaagatct
    12181 aagttaagcc agagacagac attaataaaa aggtccgctt gtcgggcctt ttttatcagg
    12241 catatcacct cttgttctgc gttattcatc ctgccacact agcaggcgac ggataaggag
    12301 ccactatgtt tttaattaat ggccatgcgc aggatcaact tgctgtaagc gaccgggcga
    12361 cgcagttcgg cgatggcagt tttacgaccg cacgtattgt tgatggcaac atttgccatc
    12421 tggaagcgca tcttcagcgc ttgcaggttg cctgtgaaaa attacggatc gcttttagcc
    12481 attggtcgac ccttcggcaa gagatgacaa tgttggccac agggcatgat tcaggcgtgt
    12541 tgaaagtgat cattagccgt ggtagcggcg gccggggata cagcgccatg aattgtcagg
    12601 cagctacccg aatcctctcc gtttctgctt atcccgctta ttattctcag tggcgtaagc
    12661 aaggcatcac tcttaccctt agtcccatac cgcttgggcg caatccttat cttgccggat
    12721 taaaacatct gaaccgcctc gaacaggtgt tgattcgctc tcatcttgag cagacggacg
    12781 ccgatgaggc gctggttctt gacagcgagg gatgggttac ggaatgctgt gcggctaatt
    12841 tgttctggcg tacaggcgac attgttttta cgccgcgtct ggatcaggcc ggggtgaacg
    12901 gcattatgcg acaattttgt ttacgccaac tggcgcaatc tcctttccag gttcttgaag
    12961 tacaggcgag agaggaggca gtcaggcagg cggatgagat tatcatctgc aacgcgctaa
    13021 tgccgattat tcccatacgc gcctatcacg ggacgtcgta ttcttcgcga acactgtttc
    13081 aatttttagc cccattttgt gagcatccga attagttatg aaaaaattgt caggcgtttt
    13141 ccttctgctg ttggttgtgc tgggtattgc cacgggcgtg gggatgtgga aagttcgcca
    13201 tctggcgaac agcacgttac ttattaaaaa cgagactatc tttacgctca aggcgggaac
    13261 gggtcggctg gcgcttggtg accagcttta tgatgaaaaa atcattaatc gtccccgggt
    13321 atttcagtgg ctgctgcgcg tggagcctga gttatcgcac tttaaagcgg gaacttaccg
    13381 ttttacgccc gggatgaccg tacgggagat gcttgagttg ctggagagcg gcaaagaagc
    13441 gcaattcccg ttgcggtttg tggaagggat gcgccttagc gattacctga aacagttacg
    13501 agaggcgccg tatattcgcc atacattgcc ggatgatgac tacgccactg tcgctcaggc
    13561 attaaagctt gcgcacccgg aatgggtaga agggtggttc tggcctgata cctggatgta
    13621 taccgccaac accagcgatg tcgctattct caagcgagcg caccaaaaga tggtgaaagc
    13681 tgtcgatact gtctggaaag gtcgggccga ggggctgcct tataaagatc agaaccaact
    13741 ggtgacaatg gcctcgatta ttgaaaaaga gacggctgtc gccagcgaac gcgatcaggt
    13801 ggcctcagtc tttattaatc gcctgagaat cggtatgcgc cttcagaccg atcccaccgt
    13861 gatttacggg atggggacga gttataatgg taacttgtcg cgtgcggatc tggaaaagcc
    13921 gacggcttat aacacgtata ccataaccgg gctgccgcca ggaccgattg catcgcccag
    13981 cgaagcgtca ttgcaggcgg cggcgcatcc ggcgaaaacg ccgtatctct attttgtggc
    14041 cgacggtaaa ggcggtcaca catttaacac caatcttgcc agccataatc ggtcagtgca
    14101 ggagaaagtg cttaaggaaa aaaatgggca gtaattatat cgtcatcgag ggcctggaag
    14161 gcgccggaaa aaccactgcg cgcgacgtgg tggtggagac ccttgagcaa ctgggtattc
    14221 gtaacatgat ttttacccgt gagccgggcg gtacgcagct tgccgaaaaa ctaagaagtc
    14281 tggtgctgga tatccgatcg gtaggcgacg aagtgattac cgataaagcg gaagtgctga
    14341 tgttttatgc cgctcgcgta cagctcgtcg aaacggtaat caaacccgcg ctggcgcaag
    14401 gcgtatgggt gatcggcgat cgccacgatc tctcgaccca ggcgtatcag gggggagggc
    14461 gcggcattga tcaaaccatg ctggcgacac tacgcgatgc cgtgctgggc gattttcgtc
    14521 ctgacctgac gctgtatctg gatgtcacgc cggaagtcgg gctaaaacgc gccagagcgc
    14581 gcggcgattt ggatcgcatt gagcaggaat cttttgattt ctttaaccgg actcgcgcgc
    14641 gctatctgga actggcggcg caagactcgc gtatccgcac cattgacgcg acccagccgc
    14701 tggatgccgt catgcgcgac attcgcgcca cggtgacgaa gtgggtgcag gagcaagcgg
    14761 catgaaatgg tatccatggt tacggcccgc ctatgaaaaa ctggtagaaa gttaccaggc
    14821 gggacgtggg caccatgcgc tactgattca ggccttacct ggcatgggcg acgaggcgct
    14881 gtgctatgcg ctgagccgtt atctgttatg ccagcagcct gagggccaca aaagctgtgg
    14941 gcattgccgt ggctgtcagc ttatgcaggc tggcacgcat ccggactatt acacgctgac
    15001 gccggataaa ggcaaaagca gccttggtgt agatgcggta cgcgaggtca gcgagaaatt
    15061 gtacgagcac tcccgtctgg gtggtgcgaa ggtggtgtgg attgcggatg cggcgctatt
    15121 aaccgacgcc gccgccaatg cgttgctcaa aacgctggaa gagccgccgg agcaaacctg
    15181 gtttttcctt gccagcccgg agcctgctcg tctgttggcg acattacgca gccgttgtcg
    15241 gctgcatcat ctggcgccgc cgtccgaatc gtatgcgatg tcatggctgt cgcgagaagt
    15301 gacggcgtca caagaagcat tgctcacggc gctacgcctg aacgcggggt cgcccggcgc
    15361 cgcgctggcg ctgttgcagt ctgaacgttg ggcgcagcgt gaggcgctgt gtcaggcgtt
    15421 gatggacagt ttacatacgg gcgactggta tgcgttatta acggcgctca atcatgagca
    15481 agccccggcg cgcctgcact ggctggcgac gctgctggta gacgcgctga aacgtcagca
    15541 cggcgcgtcg tacctgacaa acgttgatgc ggacgcggtt gttgccgcgc tggcggggcc
    15601 gctatccccg gcgcgtattc aggcaatcct gaacgatgtt tgccattgtc gtgatcaatt
    15661 acttcatgtg accggattaa atcgcgaact ggtattaacc gatctcattc tccgcatcga
    15721 gcattacctg caaccaggca ccttgttgcc tgttcctcat ctttgagaga gacattatgt
    15781 ttttagtcga ctcacactgc catcttgatg gtctggatta tcaatctttg cataaggacg
    15841 tggacgatgt gctggcgaaa gccgccgcgc gcgatgtgaa gttctgttta gcggtggcga
    15901 cgacgttgcc ggggtatcgc catatgcgcg agctggtggg caagcgcgat aatgtggtct
    15961 tttcctgcgg cgtgcatccg ttaaatcagg atgaagtata tgacgtagaa gaactgcgcc
    16021 tccttgctgc agaagacgat gtggtggcga tgggcgagac cgggcttgat tacttttaca
    16081 cgcctgagac caaaatccgc cagcaggcgt cttttattca tcatatccag attggccgcg
    16141 aattgcataa accggtgatt gtccatactc gcgacgcgcg tgccgatacg ctggctatcc
    16201 tgcgcgaaga aaaagtgacg gattgcggcg gcgtactaca ctgttttaca gaagacagag
    16261 aaacggccgg caaattgctg gatctggggt tttatatctc tttttccggc atcgtaacgt
    16321 tccgtaacgc tgaacagttg cgtgatgcgg cgcgctatgt gccgctggat cggttattag
    16381 tcgagaccga ttctccttat ctggcgccgg tgccgcatcg cggtaaagag aaccagcctg
    16441 cgatggtacg cgacgtcgca gaatatatgg cggtattgaa aggggttgcc gttgaagaac
    16501 tggcgcagat caccaccgat aactttgctc gcctgttcca tattgacgcg tctcgcctgt
    16561 catcaatccg ttaaacgagt ttttttaaag ctcgtaatta ataagcaaag cgcgtaaagt
    16621 tcaccgccac aaaaggggcg gtgagcgagc ttatggaaac attcgaaaac tcattttggc
    16681 agaatgtgat actttttagg ctatctggcg ctgaaacgtg atagccgtca aacaaaatca
    16741 gacgtattta ttttactctg tgtaataaat aaaagggcac ttagatgtcc tgtccacggc
    16801 ggggttctcc cccctcgcca atgcgtgaga acgtagaaaa gcacaaatac tcaggagcac
    16861 tctcaattat gtttaagaat gcatttacta acctgcaaaa ggccggtaaa tcgctgatgc
    16921 tgccggtatc cgtactccct atcgcaggta tcctgctggg tgtcggttcc gctaacttca
    16981 gctggctgcc agccgttgta tcgcacgtta tggcagaagc gggcggatct gtttttgcca
    17041 atatgccgct gattttcgct atcggcgtgg cgttgggctt caccaacaac gacggcgttt
    17101 cggctctggc ggcggtagta gcgtatggca tcatggtgaa aaccatggct gtggttgcgc
    17161 cgctggttct gcatttacct gctgaagaga tcgccgctaa acaccttgct gatacgggtg
    17221 ttctcggggg gattatctcc ggtgcgatcg cagcgtatat gtttaaccgc ttctaccgta
    17281 tcaaactgcc tgagtatctg ggcttctttg cgggcaaacg cttcgtgccg atcatttcgg
    17341 gtctggccgc tatttttacc ggtgtggtgc tgtctttcgt atggccgcca gtcggtacgg
    17401 ctatccaggc gttctcgcag tgggcggctt atcagaaccc ggttgtcgcg tttggcattt
    17461 acggttttat cgagcgttgc ctggtgccgt ttggtctgca tcatatctgg aacgttcctt
    17521 tccagatgca gatcggcgaa tacaccaacg cagcgggtca ggtattccac ggcgacattc
    17581 cgcgctatat ggcgggcgac ccgacggcgg gtatgttgtc tggcggcttc ctgttcaaaa
    17641 tgtacggtct gccggctgcg gccattgcta tctggcactc tgctaaaccg gaaaaccgcg
    17701 caaaagtggg cggtatcatg atttccgccg cgctgacctc gtttttgacg ggtattaccg
    17761 agcctatcga gttctccttc atgttcgtgg cgccgatcct gtacattatt cacgcgattc
    17821 tggcaggtct ggcattcccg atctgtatcc tgctggggat gcgtgacggt acgtcgttct
    17881 cccacggtct gatcgacttt atcgtgctgt ccggtaacag cagcaaattg tggctgttcc
    17941 cgattgttgg cgccggttat gcgattgtgt actacaccgt gttccgcgtg ctgatcaaag
    18001 cgctggatct gaaaacgccg ggccgtgaag actctactga tgacgcaaaa gcgggcgcta
    18061 ccagcgaaat ggcgccggct ttgattgcgg cgtttggcgg taaagagaac atcactaacc
    18121 tggatgcctg tatcacgcgt ctgcgcgtga gcgtagccga tgtagcgaaa gtggatcagg
    18181 ctggcctgaa gaaactgggc gcggcaggcg ttgtcgtcgc gggttccggc gttcaggcta
    18241 ttttcggtac gaaatccgat aacctgaaaa cggaaatgga tgagtacatc cgtaacagct
    18301 aagcagtaat gatgttgggg agtattaagg cagccattcg gctgcctttt ttaatggcgc
    18361 tttacatgac gctctccgac agtctgtcag aactgatagt tggcggtgag gctgacgtta
    18421 cgcggcgcgc cgtaaacaat ggaactatca atattggtgt cgtaggtttt atcgaacagg
    18481 ttgttgatgt ttccctgtac ggagaaattt ttcgtcacct gatagcgggt aaacagatcg
    18541 accagcgcat agctgccctg ttcggcgcgg aaggtgccgt atggcgtcgt ggtatctttg
    18601 taaacccgat tctgccagtt cacgccgccg ccgaccgtca gctccggtat cgccggcaga
    18661 cgatagcggg tgaataactt cacgctggtg cgcgggagat tagggttcac ggcgttacct
    18721 tcattgtcct cggcaacata ccgggtagcc ccgaaagtca tctgccagtt atcggtaatt
    18781 gcgccgttca cttcaaattc gacgcctttg ctcaccgttc cgtcagtaga cttccaggca
    18841 aattccccat tactgccagg gatgggaata gtggttgctt gagcgacatt atcctgctca
    18901 atgcggaaca cggacaacgt agtggtgagg cggctgttca tccagtcgga cttcaggccc
    18961 gcttcatagt tattaccggt aatcggagcc agatattgac ccgctttgtc gcgtttattc
    19021 tgcggctgaa agatagaggt ataactggca taagcggacc agttgtcgtt gatatcataa
    19081 atcagcccgg catacggcgt ggtatggttt ttctccatgc tgtaggtcag tgtatcaaca
    19141 cgccagttgg tataacgagc gccaagaatc agatgcagcg ggtcggccag cgaaatgcac
    19201 gtagcggcat acagcgattt catatgcgtg gtatcgtcct gcgccagatt ttgtggcgcc
    19261 cagtgggttt gggggaaatt accgttaaag gcgccgaagt tgccaatgtc gtccggaaag
    19321 acgttcgccc aggcgctaaa atagcggtta ttctgtttac tataactgcc gccaaacatc
    19381 atattgtgct gacggccaaa cagctcataa gcgccatcag caaagagatc tatggcatct
    19441 actttgcgct tgccgctgtt ccagccagta ccgccgacca cggggtagct tgcgccataa
    19501 ggactcacca gcgtacctgt ctctttatcc actaaagcat cgatatacat cattttactg
    19561 tcgaatttga ccctcagtat gggtcgcatt cagggtcgcc tgccagcttt cggcaaaacg
    19621 ctgcttaagc gtgacgaaga atttatttat ctctttattg ttataagccc agtccggggc
    19681 ggtactacgc gcgcggtcat agctattttt gctgccatcg gtattccagc gcggcagacc
    19741 gccccaggtc gggctgttga catcaatttt ttgatattca taaccggctg aaaggttggt
    19801 agttgcaccc agatcggcat cgataattcc ggaaaagaac gctttctcac tgttatagcg
    19861 gtccagccag gaatcattat tctgataacc cgccacgatg cgcccacgga cattaccgtc
    19921 tgcggtgagc ggactttgca gatccatgac gtaacgctgc ttattccagc taccgtattc
    19981 tgtggagacg ttacctttga actcccgact ggtggcgtgt ttacggatca tattaattga
    20041 ggcagaagga ttgccggttc cggtcatcag cccattcgcg ccgcgaacca cctccacgcg
    20101 ctcatacagc gcggtatccg ttagcgcatc gcccagattc cagcgggact caaaatacgt
    20161 tggaataccg tcaaccatat agttgtcaat ttcaaacccg cgcgagtaat agctgatgcg
    20221 atcggagtca gcctggcttc cgctgatccc cagcgtattg gtcatcacct cgcccagggt
    20281 ttgcaactgc tggtcttcca tacgctgttg gctgacaata ctgaccgact gcgggatatc
    20341 gcgctgagtc atcggcattt tggtgcccgc tgcggtcgtt ttcacgctgt aatcctgttc
    20401 ttcacggttt atggcgtcag cggtcgtcgc gccttcgaca ataacggtat cctcagccgc
    20461 gaaggcggca ggcataaatg ccatcgccat acccatagct aacagcgacg gtgcggcggt
    20521 ggacggaagg tgtttgtccc ggcggtattg aatgaaagac atctgaaaat ccttgcttgt
    20581 tattggggta agttcaggac gtatgacgtt gaaccttttc attctttgct agttaatgcg
    20641 tataaaaatg caaatgagaa atatacgcat ttgtattaaa tgtgtaaaac ggtataacca
    20701 gggaaactag aaatattttt taagcgtaca aaggcgtcat ggcaggggga tatggcggta
    20761 agtccagcat gtagtcattt ttcgcttaat aaatcgtggg ttaaagttga aagagcgtcg
    20821 gtaactcgct catactctat actcgcagta tggctcggcg tagcatgtgc gctgcaaggg
    20881 ctattatgaa aaaggaaaac gtcgtggcag aagaaactat attcagcaaa attattcgtc
    20941 gtgaaatccc ttcggatatc gtttatcagg atgagctggt caccgccttt cgtgatattt
    21001 caccgcaggc gccgacgcat atcttgatta ttcccaatat cctgatccca accgtcaatg
    21061 acgtgacggc ggaacatgaa caggcgttag gtcggatgat caccgtggcg gcgaaaatcg
    21121 ctgaacaaga aggcattgcc gaagatgggt atcgtttaat catgaatacc aaccgtcatg
    21181 ggggccagga ggtttatcat atccatatgc acctactggg cggccgcccg ctaggcccga
    21241 tgctggcgca taaaggcttg taagtatgat caaaggatgc atcgcggttt ctctgggctt
    21301 gctgctgctt accggctgcc ggtcacatcc tgaaattccg gtaagcgacg cgcagtcgct
    21361 ggtgatggag tccgcggttc tggcggcggg tgtcaccgca gagccgcctg aactgacggc
    21421 gtctgatatc cagccatcag cttcttcccg cgtctataac gaaaggcaag agcccataac
    21481 cgttcattat cggttttact ggtatgacgc gcgggggctg gagatgcatc cgctggaggc
    21541 gccgcgtagc gtaaccatac ccgcgcgttc gtcggtaacg ctatttggca gcgccaatta
    21601 tctgggggcg cataaggtca ggctttatct ttatttgtga ggagtgaatt ttgatgacaa
    21661 aaatgcatcg ctacgccgcc attgctgcgc tggcgatatt tctctccggg tgtatggcgc
    21721 aacgtcaacc tgcgccagtt gaagaggtaa aaccagcgcc agaacaaccc gcgcagccgc
    21781 cgcagcctcc tgttgtgccg tctgtgccaa cgattccaca acaaccgggg ccgatcgaac
    21841 atgaagatca aacgggccag ccagcgccta aggtgcgcca ctatgactgg aacggcgcga
    21901 tgcaaccgct ggtcagcaaa atgttgcagg ctgatggcgt gacggccaga agcgtattgc
    21961 ttgtcgacag cgtgaataac cggacgaatg ggtcgttaaa tgcgaacgag gcaacggaaa
    22021 cgttacgtaa tgcgctggcg aacaacggta aatttacgct ggtctccgta cagcaactcg
    22081 cgatggcaaa acagcagtta gggttgtctc cgcaggatag tctgggaacg cgcagtaaag
    22141 ctattggcat tgcgcgcaat gtcggggcgc aatatgtact ttactccagc gcatccggta
    22201 acgttaacgc gcctgcatta cagatgcagt taatgctggt gcaaactggc gagataatct
    22261 ggtcaggtaa aggtgcggtc caacaacaat aatcccttaa cgcgcgacga gatcctgtcg
    22321 cgctattttc cccagtatcg tcccgccgtc gccgcatcgc aggggctaag cggcgggagc
    22381 tgtattattg ctcacgatac tcaccgtatc gtgctgcgcc gtcatcacga ccccgacgct
    22441 ccaccagccc attttttacg tcatcaccgc gccttatccc aattgccggc cagtctggcg
    22501 ccgcgagcgc ttttttatac gccaggctgg atggcggtag aatatctgca tggtgtggta
    22561 aattccgctc tgccagatgc cgacgaactg gcggccttac tgtatcattt gcatcaacag
    22621 ccgcgttttg gctggcgtat cgcgctatcg ccactattgg cgcagtactg gtcgtgttgc
    22681 gatccggcaa ggcgtacgcc gttttggttg cggcggctca aacagttgca aaaaaacggt
    22741 gaacctcgcc cgctgcggct cgcgcctttg catatggatg tccatggcga caatatagta
    22801 ttaacgtccg ccgggttgag actgattgac tgggagtatg ccggcgacgg cgatattgcg
    22861 ttggagctgg cggcagtatg ggttgaggat gaacgccagc accgacaact ggcagacgct
    22921 tatgccgcgc gcgcgcgaat cgacgcccgg cagctatggc gacagatacg attatggcac
    22981 ccctgggtca ttatgctaaa agcagggtgg ttcgaatacc gctggcgaca aaccggcgag
    23041 caacaattta tcaggctggc cgatgaaacc tggcgccagc tacgtatgaa aggataagga
    23101 gagcagtgtg ggcccagtaa tgttgaatgt cgaaggatgt gagctggatg cggaggagcg
    23161 cgagatactg gcgcatccgc tggttggcgg gcttattctg ttcacgcgta attaccatga
    23221 cccggaacag ctgcgcgaat tagtgcgcca gattcgggcg gcatcgcgta accatctggt
    23281 ggtggccgtc gatcaggaag gcgggcgcgt acagcgtttc cgtgaagggt ttacccgcct
    23341 gcccgcggcg caatcttttt ttgcgctgca tgggctggaa gagggggggc gactggcgca
    23401 ggaggcaggg tggctgatgg ccagcgaaat gatcgcgatg gatattgata tcagttttgc
    23461 gccagtgctg gacgttgggc atatcagcgc ggcaattggc gagcgttctt atcatgccga
    23521 tcccgcaaaa gcgttggcaa tggcaacacg ctttattgac ggcatgcatg acgccgggat
    23581 gaaaacgacc ggtaagcatt tccccggcca cggcgcggtc acggcggact cccacaaaga
    23641 gacgccgtgc gatccacgtc ctgaaacgga catccgtggc aaagatatgt cggtgttccg
    23701 cgcgctgatt agtgagaata aactggatgc gattatgcct gcccacgtga tctaccgcgc
    23761 tatcgatccg cgtccggcaa gcggttcgcc gtactggctg aaaacggtgc tgcgtcagga
    23821 gctaggcttt gacggcgtca ttttctccga cgatctgtct atggagggcg cggcgattat
    23881 gggcagctat gctgagcgcg ctcaggcgtc gctggatgcg ggttgcgata tgattctggt
    23941 ctgcaataat cgtaaaggcg cagtcagcgt gctggataat ctgtcgccga tcaaagcaga
    24001 acgtgttaca cgtttgtatc ataaaggttc attttcacgc cgggagctca tggactcagc
    24061 acgctggaaa acagccagcg cccagctcaa ccagttacat gaacgctggc aggaagaaaa
    24121 agcaggtcat taactcgagt tttcgtgagg gtgccagatg attatttatt tacacggttt
    24181 tgattcaaat agtccgggta accatgaaaa agtgttgcaa ttacaattta tcgacccgga
    24241 tgttcggctg gtaagctaca gtacgcggca tcctaagcac gatatgcagc atctgctgaa
    24301 agaagtggac aaaatgttgc agttgaatgt ggacgagcgc cctttaatct gtggcgtagg
    24361 gctgggcggt tactgggcgg agcggattgg ctttttgtgc gatatccgtc aggtggtttt
    24421 taacccgaac ctgttcccct atgaaaacat ggaggggaaa atcgatcgcc cggaagaata
    24481 tgcggacatc gctacaaagt gcgtgaccaa ctttcgcgaa aaaaatcgcg atcgttgtct
    24541 ggtgatcctc tcgcgtcatg acgaagcgct ggacagccaa cgctcagcgc aagcgcttca
    24601 cccgttttat gaaattgtgt gggatgagga acagactcac aaattcaaaa atatttcgcc
    24661 gcacttgcaa cgtatcaaag cgtttaaaac gctggggtaa cgccatccgg caatatggcg
    24721 ttatcagtga ccggataacc agccttgcgg ctggtttttt tatgctcaat tctcgcaaac
    24781 tgtctatctt ttcagcatga aaacttgatg cacatcaatt ttggtatgac caatgcaccg
    24841 ttc
//
LOCUS       DAJVSD010000041        24492 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.041, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000041 DAJVSD010000000
VERSION     DAJVSD010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 24492)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24492)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24492
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.041"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            84..731
                     /gene="fucA"
                     /locus_tag="OQP62_001392"
     CDS             84..731
                     /gene="fucA"
                     /locus_tag="OQP62_001392"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HCS1720981.1"
                     /translation="MERNRLARQIIDTCLEMTRLGLNQGTAGNVSVRYQGGMLITPTG
                     IPYEKLTESHIVFIDADGQHEQGKLPSSEWRFHMAAYQTRPDANAVVHNHAVHCTAVS
                     ILNRPIPAIHYMIAAAGGNSIPCAPYATFGTRELSDHVAVALKNRKATLLQHHGLIAC
                     EENLDKALWLAHEVEVLAQLYLSTLAIVDPVPVLDDEAIAIVLEKFKTYGLRIEE"
     gene            748..1896
                     /gene="fucO"
                     /locus_tag="OQP62_001393"
     CDS             748..1896
                     /gene="fucO"
                     /locus_tag="OQP62_001393"
                     /EC_number="1.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactaldehyde reductase"
                     /protein_id="HCS1720982.1"
                     /translation="MANRMILNETAWFGRGAVDALTDEVTRRGYHKALIVTDKTLVQC
                     GVVDKVTSRMDAAGLAWEIYAGVIPNPTISVVQEGLKVFTQSGADYLIAIGGGSPQDT
                     CKAVGIISNNPEFADVRSLEGLSPTRKPSVPIMAIPTTAGTAAEVTINYVITDEEKRR
                     KFVCVDPHDIPQAAFIDADMMDGMPPALKAATGVDALTHAIEGYITRAAWALTDALHI
                     KAIEIIAGALRGAVAGEKEAGEAMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPH
                     GVANAILLPHVMRFNAGSTNEKFRDIARAMGVKVEGLSLEEARNAAVEAVFTLNRDVG
                     IPLHLRDVGVRKEDIPALAQAAFDDVCTGGNPREASLADIVELYHTAW"
     gene            complement(1988..2743)
                     /gene="xni"
                     /locus_tag="OQP62_001394"
     CDS             complement(1988..2743)
                     /gene="xni"
                     /locus_tag="OQP62_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417278.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flap endonuclease Xni"
                     /protein_id="HCS1720983.1"
                     /translation="MAAHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIIHSQPTH
                     AVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNE
                     ADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGV
                     LPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVQFQNLEGIYAHLDEVPEKWRKKL
                     ETHKEMAFLCRDIARLQTDLHIDGNLQQLRLVR"
     gene            complement(2914..4281)
                     /gene="sdaB"
                     /locus_tag="OQP62_001395"
     CDS             complement(2914..4281)
                     /gene="sdaB"
                     /locus_tag="OQP62_001395"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461891.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase II"
                     /protein_id="HCS1720984.1"
                     /translation="MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARHILTDVTR
                     VVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDAIPSFIQDVNTHGRLLLANGQ
                     HEVEFPVDKCMNFHADNLSLHENGMRITALAGNKVLYSQTYYSIGGGFIVDEEHFGLT
                     NSEPVNVPYPYKTAADLQRHCQETGLSLSGLMMQNELALHSKEALEQHFAKVWEVMRS
                     GIERGITTEGVLPGKLRVPRRAAALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENA
                     AGGRVVTAPTNGACGIVPAVLAYYDKFIREVNANSLARYMLVASAIGSLYKMNASISG
                     AEVGCQGEVGVACSMAAAGLAELLGGSPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPC
                     IERNAIASVKAVNAARMALRRTSEPRVCLDKVIETMYETGKDMNAKYRETSRGGLAMK
                     IVTCD"
     gene            complement(4340..5629)
                     /gene="sdaC"
                     /locus_tag="OQP62_001396"
     CDS             complement(4340..5629)
                     /gene="sdaC"
                     /locus_tag="OQP62_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease SdaC"
                     /protein_id="HCS1720985.1"
                     /translation="MKTTQTSTIASIDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPIN
                     AGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGIGAGKLIT
                     LLYFFAIYPILLVYSVAITNTVESFLTHQLAINPPPRAILSLILIVGMMTIVRFGEQM
                     IVKAMSILVFPFVAALMLLALYLIPQWNGAALETLSFDSAASTGNGLWMTLWLAIPVM
                     VFSFNHSPIISSFAVAKREEYGEGAEKKCSKILAFAHIMMVLTVMFFVFSCVLSLTPA
                     DLAAAKEQNISILSYLANHFNAPIIAWMAPIIAMIAITKSFLGHYLGAREGFNGMVIK
                     SLRGKGKSIEINKLNKITALFMLVTTWIVATLNPSILGMIETLGGPIIAMILFLMPMY
                     AIQKVPAMRKYSGHISNVFVVIMGLIAISAIFYSLFS"
     gene            complement(6194..7558)
                     /gene="ppnN"
                     /locus_tag="OQP62_001397"
                     /gene_synonym="ygdH"
     CDS             complement(6194..7558)
                     /gene="ppnN"
                     /locus_tag="OQP62_001397"
                     /gene_synonym="ygdH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide 5'-monophosphate nucleosidase"
                     /protein_id="HCS1720986.1"
                     /translation="MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNS
                     GSLTDNSKELLSCFENFDINVLRRERGVKLELINPPEDAFVDGRIIRALQANLFAVLR
                     DILFVNGQIHNAGRFQHLDLESSTHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN
                     ENEYLYARRVGTQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPS
                     IIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPA
                     NKNQVLPLILTGPKESADYFRVLDEFITHTLGEAARRHYRIIIDDAAEVARLMKKAMP
                     QVKENRRDTGDAYSFNWSMRIAPDLQVPFEPSHENMANLKLYPDQPVEILAADLRRAF
                     SGIVAGNVKEVGIRAIEANGPYKIHGDREMMRRMDDLLQGFVAQHRMKLPGSAYIPCY
                     EICA"
     gene            complement(7672..8520)
                     /gene="queF"
                     /locus_tag="OQP62_001398"
     CDS             complement(7672..8520)
                     /gene="queF"
                     /locus_tag="OQP62_001398"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HCS1720987.1"
                     /translation="MSSYENHQALDGLTLGKSTDYRDNYDASLLQGVPRSLNRDPLGL
                     TADNLPFHGADIWTLYELSWLNSQGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQ
                     TRFDTWETVRQTLERDLRACAQGNVSVRLHRLDELEGQPVAHFHGTCIDDQDISIDNY
                     QFTTDYLQHAVSGEKQVEETLVSHLLKSNCLITHQPDWGSIQIQYRGRKIDREKLLRY
                     LVSFRHHNEFHEQCVERIFNDILRFCQPETLSVYARYTRRGGLDINPWRSNTDFVPAT
                     GRLARQ"
     gene            8589..9134
                     /gene="syd"
                     /locus_tag="OQP62_001399"
     CDS             8589..9134
                     /gene="syd"
                     /locus_tag="OQP62_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SecY-interacting protein"
                     /protein_id="HCS1720988.1"
                     /translation="MDELTAQALKAFTTRYCDAWQEKHGSWPLSEELYGVPSPCIISS
                     TRDAVYWQPQPFEGEENVNAVERAFDIMVQPALHAFYTTQFAGDMPAQFADEKLTLLQ
                     TWSQDDFRRVQENLIGHLVTQKRLKLPPTLFIATQENELEVISVCNLSGEVIKETLGT
                     RNRTVLAATLAEFLTQLNPLL"
     gene            9744..10073
                     /locus_tag="OQP62_001400"
     CDS             9744..10073
                     /locus_tag="OQP62_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqcC family protein"
                     /protein_id="HCS1720989.1"
                     /translation="MTTHDRVRQQLHALETLLREHRHWRLDAPQAHLFTSTQPFFMDT
                     MEPLEWLQWVLIPRMHTLLDNAQPLPEAFAVAPYYEMALAADHPQREAILAVLQDLDA
                     LFVRDKS"
     gene            10073..10855
                     /gene="truC"
                     /locus_tag="OQP62_001401"
     CDS             10073..10855
                     /gene="truC"
                     /locus_tag="OQP62_001401"
                     /EC_number="5.4.99.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(65) synthase TruC"
                     /protein_id="HCS1720990.1"
                     /translation="MLEILYQDPWLVAVNKPAGWLVHRSWLDRDEKVVVMQTVRDQIG
                     QHVFTAHRLDRPTSGVLLMGLSSEAGRRLAQQFEQHHIRKRYHAIVRGWLIDDAVLDY
                     PLVEERDKIADKFAREDKAPQPAVTQYRGLATVEMAVPTGRYPTTRYGLVELEPKTGR
                     KHQLRRHLAHLRHPIIGDSKHGDLRQNRSAAEHFACRRLMLHASRLELTHPFTGQPLI
                     IQAGLDETWMQVLTQFGWRGLLPDNERVEFTAASRQDETHLT"
     gene            10874..11323
                     /locus_tag="OQP62_001402"
     CDS             10874..11323
                     /locus_tag="OQP62_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HCS1720991.1"
                     /translation="MAEIGIFVGTMYGNSLLVAEEAEAILARQGHSATVFEDPELSDW
                     QQYQDKVALVVTSTTGQGDLPDSIAPLFHGIKDTLGFQPNLRYGVIALGDSSYPNFCN
                     GGKQFDALLQEQSAQRVGEILFIDASEHPEPESQSNPWVENWGTLLS"
     gene            complement(11473..11721)
                     /locus_tag="OQP62_001403"
     CDS             complement(11473..11721)
                     /locus_tag="OQP62_001403"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1720992.1"
                     /translation="MQLLLGRLLCTLHAFIHWQEKYKKRATHTHRATTQYFGDELRLF
                     MAKAQDSGSHFTEMKSEGVGVDAGGVKREECETGRLIT"
     gene            11804..13162
                     /gene="gudP"
                     /locus_tag="OQP62_001404"
     CDS             11804..13162
                     /gene="gudP"
                     /locus_tag="OQP62_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactarate/glucarate/glycerate transporter
                     GudP"
                     /protein_id="HCS1720993.1"
                     /translation="MSSLSHAASSAEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGS
                     EMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSVFTLLQ
                     GFVDIFSGFGIIVALFTLRFLVGLAESPSFPGNSRIVAAWFPAQERGTAVAIFNSAQY
                     FATVIFAPIMGWLTHEVGWSHVFFFMGGLGIIISFIWLKVIHEPNNHPGVNKKELEYI
                     AEGGALINMDQKDTKAKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFP
                     VYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGFLNIARKTPIVLGM
                     LLSMVMVFCNYVNVEWMIIGFMVLAFFGKGIGALGWAVMADTAPKEISGLSGGLFNMF
                     GNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALVAIISYLVLVGDIKRIELKPVAGQ
                     LS"
     gene            13159..14499
                     /locus_tag="OQP62_001405"
     CDS             13159..14499
                     /locus_tag="OQP62_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="HCS1720994.1"
                     /translation="MTTQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTD
                     NAGHTGVGETPGGEVIYQTLVDAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGA
                     WTFELRVNAVAALEAALLDLQGQALNVPVCELLGPGKQRDAVTVLGYLFYIGDRTKTD
                     LPYLESTPGSHEWYRLRHQEALNSDAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDT
                     VRALKKRFPDARITVDPNGAWLLDEAIALCKGLNDVLTYAEDPCGAEQGFSGREVMAE
                     FRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLTGAVRVAQLCDDWGLT
                     WGCHSNNHFDISLAMFTHVGAAAPGKPTAIDTHWIWQEGDCRLTKNPLEIKNGKIAVP
                     DAPGLGVELDWEQVRKAHDAYKKLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH"
     gene            14520..15860
                     /gene="gudD"
                     /locus_tag="OQP62_001406"
     CDS             14520..15860
                     /gene="gudD"
                     /locus_tag="OQP62_001406"
                     /EC_number="4.2.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="HCS1720995.1"
                     /translation="MSTQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIVK
                     DNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLDEYKNVLTAVRNQFADRDAGGRGLQ
                     TFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKVT
                     PLPYQSQPDEQCDWYRLRHEEAMTPETVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAE
                     SIVALAKRFPQARVTLDPNGAWSLNEAISIGKYLKGSLAYAEDPCGAEQGFSGREVMA
                     EFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGL
                     TWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGMVQV
                     PTKPGLGVELDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR"
     gene            15938..17080
                     /locus_tag="OQP62_001407"
     CDS             15938..17080
                     /locus_tag="OQP62_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HCS1720996.1"
                     /translation="MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADG
                     GEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPA
                     QRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGND
                     IAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEM
                     IERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDAL
                     HLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVGVVH
                     EHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR"
     gene            complement(17124..19880)
                     /gene="barA"
                     /locus_tag="OQP62_001408"
     CDS             complement(17124..19880)
                     /gene="barA"
                     /locus_tag="OQP62_001408"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase BarA"
                     /protein_id="HCS1720997.1"
                     /translation="MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDA
                     GASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFH
                     LDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYV
                     ALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRR
                     GQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQN
                     VELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTI
                     ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTL
                     NIKNDVPENVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIR
                     DTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNR
                     GSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCTLDLLSDTPVEVIYS
                     PTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKL
                     KQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKL
                     IGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQ
                     QTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPE
                     PAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGL
                     VDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAK
                     KILG"
     gene            19938..21233
                     /gene="rlmD"
                     /locus_tag="OQP62_001409"
     CDS             19938..21233
                     /gene="rlmD"
                     /locus_tag="OQP62_001409"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HCS1720998.1"
                     /translation="MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGL
                     LPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVGIDLQQR
                     SKSAALARLMKHEVNDIIAGASWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQ
                     CPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKL
                     ERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLTFSPRDFIQVNEAVNQQMVAR
                     ALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVQALVEKGRENAIRNGLHN
                     VTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPAT
                     LARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM"
     gene            21285..23519
                     /gene="relA"
                     /locus_tag="OQP62_001410"
     CDS             21285..23519
                     /gene="relA"
                     /locus_tag="OQP62_001410"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP diphosphokinase"
                     /protein_id="HCS1720999.1"
                     /translation="MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQ
                     QTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKS
                     IVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHL
                     REVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLL
                     HERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDV
                     RAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTV
                     EIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGE
                     MLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP
                     FTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAG
                     RQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNK
                     PSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGF
                     ITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRD
                     ITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR
                     LHGG"
     gene            23604..23960
                     /locus_tag="OQP62_001411"
     CDS             23604..23960
                     /locus_tag="OQP62_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461876.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HCS1721000.1"
                     /translation="MFLTYISFQVYSYVRFILTVEAVMARTMTVDLGDELREFIESLI
                     ESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKT
                     GMIKPDENGKINAKGQ"
     gene            23926..24222
                     /locus_tag="OQP62_001412"
                     /pseudo
     CDS             23926..24222
                     /locus_tag="OQP62_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001532579.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
BASE COUNT         5730 a         6185 c         6900 g         5677 t
ORIGIN      
        1 tattcgatta tttcaacagg acagcagcgt gatgcgaaag gcggttttgt tgtctcattt
       61 tgaatcacag agagaggtaa ataatggaac gaaatagact ggctcggcag attattgata
      121 cctgtctgga aatgacgcgg ttagggttaa atcaggggac ggcaggtaac gtgagcgtac
      181 gttatcaggg cggaatgctg attacgccga cggggatccc ctacgagaag ctgacagagt
      241 cgcacattgt ctttattgat gcagacggtc agcatgagca gggcaagctg ccttccagcg
      301 agtggcgttt tcatatggcg gcataccaga cgcgccctga cgccaatgcc gtggtacata
      361 accacgctgt ccattgtacg gcagtctcga tcctgaatcg cccgattccg gcgattcact
      421 acatgattgc cgccgcgggg gggaactcta ttccctgcgc gccctacgcc acttttggca
      481 cccgcgaact ttctgaccat gttgccgtgg cgcttaaaaa tcgtaaagcg acgctgttac
      541 agcatcacgg gcttatcgct tgtgaagaaa atttagacaa agcgttgtgg ctggcgcatg
      601 aagtggaagt gctggcgcag ctctatttaa gtacgctggc cattgtcgat ccggtaccgg
      661 tactggatga cgaggcgatc gctatcgtac tggagaaatt taaaacttac ggattacgta
      721 ttgaagagtg atgtcaggag acaggcgatg gcgaacagaa tgattctgaa tgaaacggca
      781 tggtttggcc ggggagcggt ggacgcatta accgatgagg tgacgcgccg cggttatcat
      841 aaggcgctga ttgttaccga taaaacgctg gtgcaatgcg gtgtggtcga taaggttaca
      901 agcagaatgg atgccgcagg gctggcgtgg gagatctatg cgggcgtgat ccctaatcct
      961 acgatttccg ttgtccagga agggcttaag gtctttaccc aaagtggcgc ggactatctc
     1021 atcgccattg gcggcggttc tccgcaggat acctgcaaag cggtcggtat tatcagtaac
     1081 aatccggaat ttgccgatgt gcgcagtctg gaagggctat cgccgacccg taaacccagc
     1141 gtgccgatta tggcgatccc gacaacggcg ggaaccgcgg cggaagtcac tatcaattat
     1201 gtgattaccg atgaagagaa acggcgcaaa ttcgtttgtg tcgatccgca tgatattccg
     1261 caggcggcat ttatcgatgc cgatatgatg gacggtatgc cgcccgcgct gaaagcggca
     1321 acgggcgtgg atgcgctaac ccatgctatt gaaggctata ttacccgggc cgcatgggcg
     1381 ctgacggatg cattacatat caaagccatt gagattattg ctggcgcgct gcgcggcgcc
     1441 gtagccggag aaaaagaggc cggtgaggcg atggcgctgg ggcaatacgt tgccgggatg
     1501 gggttttcca atgtggggct gggactggtg catgggatgg cgcatccgtt gggcgcgttt
     1561 tacaacacgc cgcacggcgt cgcgaatgct attttgctcc cgcatgtgat gcgtttcaat
     1621 gccgggtcta ccaacgagaa attccgtgat atcgcccggg cgatgggggt gaaggtagaa
     1681 ggattgagcc ttgaagaggc gcgtaatgcc gcagtggaag ccgtatttac gctaaatcgc
     1741 gatgtgggaa ttccgctgca tttgcgtgat gtcggcgttc gaaaagagga tatcccggcg
     1801 ctggcgcagg cggcgttcga tgatgtctgt acgggcggca atccgcgtga agcgagtctg
     1861 gcggacattg tcgaactgta tcataccgcc tggtaatttt gccggatggc gctgcgctta
     1921 tccgctctac atttcgtgca gttctgtagg ccggataagg cgttcacgcc gccatccggc
     1981 aacaaaacta ccgtaccagc cgtagctgct gtaagtttcc gtcgatatgt aaatcggttt
     2041 gcagacgtgc aatatcgcgg caaagaaatg ccatttcttt atgcgtctca agctttttgc
     2101 gccacttttc cggcacctcg tccagatggg cgtaaattcc ctccagattt tgaaactgaa
     2161 ccaacagctg ggtcgcgctt ttagggccga taccggcaac gccggggact ttcgaactac
     2221 tgattcctgc cagaccccag taatccggca actgccgggg gagtacgcca aactcttttt
     2281 caataaacgg cgcgtccagc cagcgtttct ggaagtagtc gcgaatgcgc aatcccggag
     2341 agagcaactg gcaatagcct ttatcggttg acacaatggt tgcctggtgt ccggcttcgg
     2401 taacttttag cgccagcgtc gccgccagat cgtccgcttc gttaccgtct gatgcccaac
     2461 agcgtacgcc gcgctgttca aacgcggcgc gtagggcggg catttcatta tgtaaatcgt
     2521 caggcatcgg cggacgtcct gctttgtagt ccggcaaacg ctgatgacgc cagccgctgc
     2581 tgcgcgcgtc gtcatcaaat accgctacgg catgggttgg ctggctgtgg ataatcaatt
     2641 gatcgagcgc gtgttggcag gtttccacac agggcgatcc ctgaacggcg tgaatacggc
     2701 gaatcaaatt gagcgcgtcg acgataagca gatgagcagc cacggtgttc tcccttacaa
     2761 acctgcgcgt agggtaacat tcacggcggg gggaggcgag cattgcgaaa tcgcgctatc
     2821 cgtagacctg ataagcgaag cgccatcagg caacaaaagc cggatggcgg cgagcgcctt
     2881 atccggccta cagatcctaa aatgtgctga gaattaatcg caggtaacga tcttcatcgc
     2941 caggccgccg cgcgaagttt cgcggtactt agcgttcatg tctttaccgg tttcgtacat
     3001 ggtctcaatc actttatcga ggcatacgcg cggttcgctg gttcggcgca gcgccatacg
     3061 cgcggcgttg accgctttga ctgaagcaat cgcgttacgc tcaatgcagg gaacctggac
     3121 ctgaccggca accggatcgc aagttagccc cagattatgc tccatggcga tttctgcggc
     3181 gatacacacc tgcgccggac taccgcccag cagctcggcc agacccgctg ccgccatgga
     3241 acaggccacg ccgacctctc cctgacaacc cacttcggcg ccggaaatag aggcgttcat
     3301 cttatacagc gagccaatcg cgctggcgac cagcatatag cgagcaagtg agttagcatt
     3361 tacttcgcgg ataaatttgt catagtacgc cagcaccgcc ggcacaatac cacatgcgcc
     3421 gttagtcggg gcagtgacta ctcgtccgcc tgcggcattc tcttcgttca ccgccagcgc
     3481 gaacatattg atccagtcga cgaccgccat cggatcggtg gtggtcttat cctgactgac
     3541 cagcatccga cgcagcgccg ccgcgcgacg cggaacgcgc agtttgcccg gcaatacgcc
     3601 ctcggtggtg ataccgcgct caataccgct gcgcatcacc tcccagacct tggcgaagtg
     3661 ctgctccagc gcttctttac tgtgcagagc cagttcgttt tgcatcatca gaccggagag
     3721 cgacagaccc gtctcctggc aatggcgctg taaatccgcg gcggttttat aaggatacgg
     3781 tacgttaacg ggttcgctat ttgtcaaacc aaagtgctct tcatcgacga taaagccgcc
     3841 gccaatggag tagtaggttt ggctgtagag cactttattg cccgccagcg cggtaatacg
     3901 catcccgttc tcatgcagag acaggttgtc ggcgtggaaa ttcatgcact tatcgaccgg
     3961 aaattcgact tcatgctgcc cattggccag tagtaaacgc ccatgggtgt tcacatcctg
     4021 gataaaggac ggaatggcgt cgatatcgac ggtgtccggc agattccccg ccaggcccat
     4081 aataatggcg atatcagtgt ggtggccttt acccgtcaat gacagagagc cgtagacatc
     4141 caccacgacg cgggtgacat ctgtaagaat atggcgggca atcagatcgt ccgtgaactg
     4201 cttgcctgct ttcattggtc cgacggtgtg agaactggaa gggccaatgc cgattttaaa
     4261 aatatcgaat acgctaatca tagggcatcc attgcggttg tatcatagag aagcgccgcg
     4321 gtaagcggcg ctaaaggact tagctgaaca gtgagtagaa aatagcggag atggcaatca
     4381 ggcccataat cacaacgaat acgttgctga tatgaccgct gtacttacgc attgccggta
     4441 ctttctggat ggcatacatc ggcatcagga acagaatcat cgcgatgatc gggccgccca
     4501 gggtttcaat catgcccagg atgctggggt tcagcgtcgc cacaatccag gtggtgacca
     4561 gcatgaacag cgcggtaatt ttattcagtt tgttgatttc gatggattta cctttaccac
     4621 gcagcgattt aatcaccatc ccgttaaagc cttcacgcgc gcccaggtag tggccgagga
     4681 aggatttggt gatagcaatc atcgcaatga tcggcgccat ccaggcgatg atcggcgcgt
     4741 taaagtggtt cgccaggtaa gacagaatag agatgttctg ctcttttgcc gctgccagat
     4801 ctgccggcgt caggctcagc acgcagctga agacgaagaa catcacggtc agcaccatca
     4861 tgatgtgggc gaaggccaga attttagaac atttcttctc agcgccttca ccgtactctt
     4921 cacgcttcgc aaccgcgaag gaggagatga tcggggagtg gttgaaagag aaaaccatca
     4981 ccggaatcgc cagccacagc gtcatccaca gaccgttacc ggtagacgcg gcggaatcaa
     5041 aggacagagt ttccagcgcc gcgccgttcc actgcgggat caggtacaag gccagcagca
     5101 tcagcgcagc gacgaacggg aataccagga tactcatcgc cttaacgatc atttgctcgc
     5161 cgaagcgcac gatggtcatc atgccaacaa tcaggatcag ggaaagaatc gcccgcggcg
     5221 gcggattaat cgctaactgg tgggtcagga agctttccac ggtattagta atcgccacgc
     5281 tgtaaaccag caggatgggg taaatcgcga agaagtagag cagggtaatc agtttacctg
     5341 cgccgatacc gaagtgttcc tcaacgactt cagtgatgtc ttcacccggg tttttaccgg
     5401 acagcacgaa gcgggttaaa ccacggtgtg cgaaaaaggt catcgggaaa gcgagaatcg
     5461 ccatgatgat gagcggaatc atgccgccga cgcctgcgtt gatcggcagg aacagaacgc
     5521 ccgcgccgat tgccgtgccg taaaggccca gcatccacat ggtatccgtt ttgcgccatg
     5581 cgcttcgaga gtcaatcgaa gcaatcgtgc tggtctgagt ggttttcatc tatttctcct
     5641 ggaggatgct aaaaatcagg ttgctggtct aatccaatga aaaaagacct gatcgtaaaa
     5701 tgaaatctgc ttagggacgc tttttatata atttttcgcc gtaataattt tcgggcggaa
     5761 agatacattt aagtgatgaa tctatcagtg atcccgatct caaatgcaat aatccgcttc
     5821 ttacatggat aaatttggac cattaatcta ttaaaaaaac gtcataacga atttccgggc
     5881 gcgaaggcta ccattaacga tataaggccg gaaagattgg ggcgcaagat acggaggttt
     5941 gactataaaa atcaaggttt ttagtggatt cttgcgaaga atgagagttt gaaccgataa
     6001 atcacggtaa gaggagtcag gtaaacgttt gcctggcaat ctatttatgg taaattataa
     6061 atggtgttta taaaacaatg cgggctatac ctctgatgat catcataaaa aatgaaggca
     6121 tacgtgaatc gccataccgc aatgaaagga atgggagaag cgcccggctg ctggcggcaa
     6181 ccgggcataa gcgttaagcg cagatctcgt aacaggggat gtaggcggaa cccggcaatt
     6241 tcatacgatg ctgcgcgacg aatccctgca gcagatcgtc catgcgacgc atcatctctc
     6301 gatcgccgtg gattttatac ggaccattag cttcaatggc gcgtatcccg acctccttca
     6361 cgttccccgc gacaataccg gagaaggcgc gccgcagatc cgccgccaga atctcaaccg
     6421 gctgatccgg gtacagtttc aggttggcca tattctcatg cgacggctca aacggcacct
     6481 gcagatccgg tgcaatacgc atcgaccagt taaaactata ggcgtcgcca gtatcgcggc
     6541 gattctcttt cacttgcggc atcgctttct tcatcagccg cgctacctcc gccgcatcgt
     6601 caatgatgat gcggtaatga cggcgggccg cttcgcccag cgtatgggta ataaactcat
     6661 ccagcacgcg gaagtaatcg gcgctctctt ttggtccggt caggatcagc ggcagcacct
     6721 gatttttatt ggctggattc atcagaatcc ccagcaaata aagcagctct tccgccgtac
     6781 ccacgccgcc cgggaagatg atgataccgt gtgcgatacg gacgaacgct tccaggcgtt
     6841 tttcgatatc cggcatgatg atcagttcgt tcaccagcgg gttaggcggt tcagccgcaa
     6901 taatggaagg ttcagtcatg ccgataaagc ggctgtcttt atagcgctgc tgtgcgtgac
     6961 cgaccgccgc gcccttcatg ggggcttcca tcgccccagg gccgcagccg gtgcagatgt
     7021 tcagctcgcg taatcccaac tgcgtgccga cgcgacgggc atacaggtac tcgttttcgt
     7081 taattgagtg gccgccccag cataccacca tgtttggcgc ttcgccgacg tgcagcgccc
     7141 gggcgttgcg caaaatggag aacaccagat tggtgatatg tgttgagctt tcaagatcca
     7201 gatgctggaa acggccggca ttgtggatct gcccattcac aaagagaatg tcgcgcagca
     7261 ctgcgaacag gttagcctgt agcgcacgaa taatccgccc gtcaacaaag gcgtcttcag
     7321 gcggattaat caattccagc ttcacgccgc gctcgcggcg cagtacgtta atatcgaaat
     7381 tttcaaagca ggacagcagc tctttgctgt tgtcggtcag gctgccggag ttaagaacgg
     7441 caagtgaaca gttacgaaac agttgataca ggtcgctact ggccgtgcgt ttcagcatgt
     7501 ccacttccag ttgcgacaac atatccattg agccaagcgg gctaatatgt gtaatcaagt
     7561 aaactcctta tgggacgcaa cacgccattc cctgttgatt acaatagccc tggctgatga
     7621 cctttcacaa ccttacatgc gcaatccggc acgcaaaatt gacaaaaaag attactgacg
     7681 cgccagcctg cccgtggcgg gcacaaaatc ggtattgctg cgccagggat taatgtccag
     7741 cccgccgcgg cgggtatagc gtgcataaac gcttaacgtt tccggctggc agaagcgcag
     7801 aatgtcattg aaaatacgct ctacgcactg ctcgtgaaat tcattatggt gacggaagga
     7861 gaccagataa cgcagcagtt tttccctgtc gattttgcgc ccgcgatact gaatttgtat
     7921 cgagccccag tccggttggt gggtgatcag gcagttggat ttcaacagat gactgaccag
     7981 cgtttcttct acttgcttct cgccgctgac cgcatgttgc agatagtcgg tagtaaactg
     8041 gtagttgtcg atactgatat cctgatcgtc aatacaggtg ccgtggaaat gggcgacagg
     8101 ctgtccttcc agctcatcaa gacgatgaag cctcacgcta acgttgccct gcgcgcaggc
     8161 gcgcagatcg cgctccagcg tctggcgcac cgtctcccag gtgtcaaagc gcgtctggtt
     8221 aaagctgttc agatacagtt taaaactttt ggattcgatt aaattaacgc tggtgtaatc
     8281 cagttcgaca tgtccgacgg cgacctgcgg aagaccctgg ctgttaagcc aggaaagttc
     8341 atacaacgtc cagatatccg cgccgtggaa cggcaaatta tcggctgtta atccgagcgg
     8401 gtcgcgattc aaactgcgcg gtacgccctg cagcaggctg gcgtcataat tgtcccggta
     8461 atccgttgat tttccgagag tcaggccatc gagagcctga tggttttcat aagaagacat
     8521 gtttcaccgt cataaaccag atacactatg cgtcaagtgt atcctggctt ttatgaagag
     8581 agaaactggt ggacgaactg acagcgcagg cattgaaagc ctttacgacg cgttactgcg
     8641 acgcgtggca agaaaaacac ggtagctggc cgttgagcga agaactgtat ggcgtacctt
     8701 ctccgtgcat tatttcttca acccgcgatg ccgtttactg gcagccgcag ccttttgaag
     8761 gcgaagaaaa tgtaaacgcg gttgaacgcg cctttgatat tatggtacaa cctgcgctcc
     8821 acgcgtttta caccacgcag tttgctggcg acatgcccgc gcagtttgcg gatgaaaagc
     8881 ttacgctact gcaaacctgg agtcaggatg actttcggcg cgtgcaggaa aatctgatag
     8941 gccacctggt cacgcaaaag cggctcaagc ttcctcccac gctttttatt gcgacgcagg
     9001 aaaatgagct tgaggtcatt tcggtctgta atctgtccgg cgaggtgatt aaagaaacgc
     9061 tgggcacccg caatcgtacc gttcttgccg caacgcttgc ggaattcctt acgcaactta
     9121 atcctcttct gtaatcgttt gccctaacgg gtgtgagaga tctcttacaa agtctgtagg
     9181 agatcgccag gatatcagcg gatactgagc cccgttttct tatgtaagtc tatataaaac
     9241 aactaattaa aatgtttttg cgcactttca tatgaaaatt tacttaaggt attgtctgta
     9301 agcgtcttgt aagacaaggt gaaacaggcg attctatctt cgtcgacagg gagtcgtaca
     9361 acgaagcgaa cgtcaggatg atgacgcttc agcaggacac gccaggatgg tgttacaagg
     9421 aaaggcttca ggatgaagca aagtggaaag cgcaggatgc gttaaaggac acctccagga
     9481 cggagaacga gagccgatca ggatgttcgg cggatctgga taaccaggga cgcttcagga
     9541 tgaagctatc acatcgggcg atgtgcgcag gatgtaaacg ttcaggatga acaggccgta
     9601 aggtcacagg aaaagttgtc acggatgagc agggagcacg aaaagtagct ggaatgctgc
     9661 gaaacgaacc gggagcactg tttatacagt gctccctttt tttgttattc ttcgcgccag
     9721 attttcatca ttgaggtttt aacatgacga ctcatgaccg tgtgcgtcag cagttacatg
     9781 cgcttgaaac gctgctgcgc gagcatcgcc actggcggct ggatgcgccg caggcgcatt
     9841 tgtttaccag cacccaacca ttttttatgg ataccatgga accgctggaa tggctgcaat
     9901 gggtattgat cccacgtatg cataccctac ttgataatgc gcagccgctg cccgaggcgt
     9961 ttgccgtcgc cccttattat gaaatggcgc tggcggcgga tcatccgcag cgggaggcga
    10021 tcctggcggt tttgcaggat ctggatgcgc tattcgtccg cgataaatcc tgatgctgga
    10081 gatcctctat caagacccgt ggctggttgc cgtgaataaa cccgcaggct ggcttgttca
    10141 ccggagctgg ctggatcgcg acgaaaaagt cgtggtcatg caaacggtgc gcgaccaaat
    10201 cggccagcat gtttttaccg cccaccgtct cgacaggccc acgtcgggcg tactgttaat
    10261 ggggctgtcc agcgaagcgg gacgccgtct ggcgcagcag ttcgagcagc accacatccg
    10321 taaacgctac catgccattg tgcgcggctg gctgatagat gacgcggtac tggattatcc
    10381 gctggtggaa gagcgcgata aaattgccga taaattcgcc cgcgaagata aagcgcccca
    10441 gccggctgta acgcagtatc gcgggctggc gacggtcgaa atggcggtgc cgaccgggcg
    10501 ttatcccacc acgcgttatg gcctggttga gctggaacca aaaacgggac gcaagcacca
    10561 gcttcgtcgt catctggcgc atctgcgtca tcctatcatc ggcgacagca agcatggcga
    10621 tttgcgacaa aaccgcagcg ccgcagagca ttttgcctgt cgtcgcctga tgcttcatgc
    10681 cagtcggctt gaactgacgc accccttcac cggacagccg ttgataattc aggccgggtt
    10741 ggatgaaacc tggatgcagg tgctgacaca gtttggctgg cgtggacttc tccctgacaa
    10801 tgaaagggtt gagtttacgg cggcgtcccg gcaggatgag actcatctga cataattcag
    10861 ggagatacgc ataatggcgg aaattggtat ttttgtcggg accatgtatg gcaactcact
    10921 gctggtggcg gaagaagcgg aagcgatcct cgccagacag ggccacagcg cgaccgtgtt
    10981 tgaagatcct gaactgtccg actggcagca atatcaggat aaggttgcgc tggtcgttac
    11041 ctcgacgacc gggcaaggcg atctaccgga tagcattgcg ccgctctttc acggcattaa
    11101 agatacgttg ggttttcagc caaacctgcg ttacggggtg attgcgctag gtgatagcag
    11161 ctaccccaat ttctgtaatg gcggcaaaca gtttgatgcc ctgttgcaag agcaaagcgc
    11221 gcagcgggtg ggggagatat tattcattga cgccagcgaa catccggagc cggagagcca
    11281 atccaatccc tgggttgaaa actggggaac tttactttcc tgaggtaaat ccctcccccc
    11341 tacgggaggg taccttttcg tttgcttgcg ttgccagtaa gcaaaatcac gacctgtaca
    11401 cagtgtaaag taactgaatc gtgttagctt tgggcatatg cccgcaaaag cggcagtttt
    11461 ttacgggcgt tttcatgtaa tcaagcgacc tgtttcacat tcttctcttt ttactcctcc
    11521 tgcgtcgacg ccgacgcctt ctgatttcat ttccgtgaag tggcttccac tgtcctgggc
    11581 ttttgccata aacaggcgta attcatcgcc aaaatactgt gttgttgcac ggtgagtgtg
    11641 tgtggcgcgc tttttatact tctcctgcca gtgaataaaa gcatgcagcg tgcaaagcaa
    11701 acgacctaat aaaagctgca acaaggaaac gttatctctg attccctacc ggttgtgcag
    11761 ttcagagtga gcgtagctaa cgcgaaattt caggagtgca acaatgagtt cattaagtca
    11821 cgcggcgagc agtgcggaga aacgcacgaa cgcccgctac tggatagtgg tgatgctgtt
    11881 tatcgtcaca tccttcaact acggcgaccg cgccacattg tccattgccg gctcagaaat
    11941 ggccaaagat atcggccttg atccggtagg tatgggctat gttttttctg ctttttcatg
    12001 ggcctatgtt atcgggcaga tcccgggcgg ctggctgctg gaccgctttg gttccaaacg
    12061 cgtctatttc tggtctattt tcatttggtc agtcttcacc ctgttgcagg gttttgtcga
    12121 tatctttagt ggtttcggca ttattgtcgc cctctttacg cttcgtttcc tggtcggtct
    12181 ggcggaatcg ccttctttcc cgggcaacag tcgcatcgtt gcggcctggt tcccggcgca
    12241 ggagagggga acggcggtgg ccatctttaa ctccgcgcaa tactttgcca cggttatttt
    12301 cgcgccgatt atgggctggc tgacgcacga agtgggctgg tcgcatgtct tcttctttat
    12361 gggcgggtta gggatcatca tcagctttat ctggttgaaa gttatccatg aaccaaataa
    12421 ccatccgggc gtaaataaga aagaattgga gtacatcgca gaaggcggcg cgctgatcaa
    12481 tatggatcag aaagacacca aagcgaaagt accgtttagc gtcaaatggg gccagatcaa
    12541 acagctgctg ggctctcgta tgatgattgg cgtttacatc ggtcagtact gtattaacgc
    12601 attgacctat ttctttatta cctggttccc ggtctatttg gtccaggcgc gcggcatgtc
    12661 gattctcaaa gcgggctttg tcgcctcggt tcctgcagtc tgcggcttta tcggcggcgt
    12721 gttgggcggc atcatttccg actggctgat gcgtcgtact ggcttcctga atatcgcgcg
    12781 caagacgccg attgtgctgg gaatgttgct gtcaatggtt atggtgttct gtaactatgt
    12841 gaacgtggaa tggatgatca tcggctttat ggtgttggcc ttcttcggta aaggtattgg
    12901 cgcgttgggc tgggcagtaa tggcggatac cgccccgaaa gagatcagcg gtctttccgg
    12961 cggcttgttt aatatgttcg gcaatatttc cggtattgtg acgccaatcg cgattggtta
    13021 catcgttggc accaccggtt ccttcaacgg cgcgttgatc tatgtcggcg tacatgccct
    13081 ggtggccatc atcagctatc tggtgctggt aggcgatatt aagcgtattg aactgaaacc
    13141 tgtcgcagga caattatcat gacaacgcaa tccagtcccg ttattacgga catgaaggtc
    13201 attccggttg ccggacatga cagtatgcta ctcaacatcg gcggcgcgca taacgcgtac
    13261 ttcacccgta acatcgtcgt cctcaccgat aacgccgggc atactggcgt cggcgagacg
    13321 ccgggcggag aagtgattta tcagacgctg gtcgatgcta ttccgatggt attaggccag
    13381 gaagtcgccc gcctgaacaa agtggtgcag caggtgcata aaggcaacca ggccgctgat
    13441 tttgacacct ttggcaaagg cgcatggacg tttgaactgc gggttaacgc ggtggcggct
    13501 ttggaagcgg cgctgcttga tctacaggga caggcgctta atgtgccggt ctgtgaactg
    13561 ttagggccag gtaaacagcg cgatgccgtc accgtgttgg gctatctctt ctatattggc
    13621 gatcgcacta aaaccgatct gccgtatctg gaaagcacgc cgggcagtca tgaatggtat
    13681 cgtctgcgcc atcaggaagc gctgaacagc gacgcggtcg tgcggctggc ggaagcgtct
    13741 caggatcgct acggctttaa agattttaaa ctcaagggcg gcgtgctgcc gggcgaacaa
    13801 gagattgata ccgttcgcgc gctaaaaaaa cgcttcccgg acgcgcgtat taccgtggat
    13861 ccgaacggcg cctggctact ggatgaagcc attgcgttgt gcaaagggct gaatgatgta
    13921 ctgacctacg cggaagatcc gtgcggcgcg gagcaaggat tctctggtcg tgaagtcatg
    13981 gcggagttcc gccgcgcgac aggactgccg gtggcgacca atatgattgc caccaactgg
    14041 cgtgaaatgg gacacgcggt gatgctcaac gcggtagata ttcctcttgc cgacccgcat
    14101 ttctggaccc ttaccggcgc cgttcgcgtg gcgcaactgt gcgatgactg ggggctaacc
    14161 tggggctgcc attcgaataa ccattttgat atttcactgg cgatgtttac ccatgtcggc
    14221 gcggcggcgc caggcaaacc caccgctatt gatacgcact ggatctggca ggagggcgat
    14281 tgccgcctga ctaaaaatcc gctggaaatt aaaaacggca aaattgccgt tccggatgcg
    14341 ccaggactgg gcgtagagct tgactgggaa caggtgcgaa aagcgcatga cgcgtataaa
    14401 aagctgccag gcggcgcgcg taatgatgca ggcccgatgc aatacctgat ccccggctgg
    14461 acttttgacc gcaaacgccc tgtttttggt cgtcactaat tctgaataag gacacagtta
    14521 tgagtactca atttaccacg cctgtagtga ctgaaatgca ggttatcccg gttgcgggtc
    14581 atgacagtat gctgatgaac ctgagcggcg cgcacgcccc gttctttacg cgcaacatcg
    14641 tcattgttaa agataactcc ggtcatactg gggtcggcga gattccgggc ggcgaaaaaa
    14701 ttcgcaaaac gctggaagat gcgattccac tggtggtggg aaaaacgctg gatgaatata
    14761 aaaatgtcct gaccgccgtt cgcaaccagt ttgccgatcg cgatgcgggc ggacgcggtt
    14821 tacaaacgtt cgatctccgt accactatcc atgtggtgac gggcattgaa gcggcaatgc
    14881 ttgacctttt gggccaacat ctgggcgtca acgtcgcttc gctgttaggc gacggtcagc
    14941 agcgcagcga agtcgaaatg ctgggttatc tgttctttgt cggcaatcgc aaggttacgc
    15001 cgctgccgta tcaaagccag ccggatgagc aatgcgactg gtatcgtctg cgccatgaag
    15061 aggcgatgac gccggaaacg gtagtgcgtc tggcggaagc ggcgtatgaa aaatacggct
    15121 tcaacgactt caaactgaaa ggcggcgtgc tggcgggcga agaagaggcc gagtcaatcg
    15181 tggcgctggc gaaacgtttc ccacaagcgc gcgtcacgct cgatccaaac ggtgcctggt
    15241 cgctgaacga agcgatcagc attggtaaat acctaaaagg ttctctggcc tatgcagaag
    15301 atccgtgcgg cgcggagcag ggtttttccg gtcgtgaagt gatggcggaa ttccgtcgcg
    15361 cgaccggatt accgacggcc accaatatga tcgccaccga ctggcgtcag atggggcata
    15421 cgctgtcgct gcaatccgtc gatatcccgc tggcggaccc gcacttctgg actatgcaag
    15481 gctctgtacg cgtggcgcaa atgtgtcatg agttcggcct gacttggggc tcgcactcta
    15541 acaaccactt tgatatttca ctggcgatgt ttacccatgt tgccgcggcg gcgccgggca
    15601 agatcactgc tatcgatacc cactggatct ggcaggaagg caaccaacgt ctgactaaag
    15661 aaccgtttga aattaaaggc ggcatggtgc aagtaccgac caaaccgggg ctgggcgttg
    15721 agctcgatat ggatcaggtg atgaaagcgc atgagctcta tcaaaagcat ggcttaggcg
    15781 cgcgtgacga cgcgatggga atgcagtact taattcctgg ctggacgttt gataataagc
    15841 gcccttgcat ggtgcgttaa gtcagagccg gttccgtaag gaaccggtcc ttctctgggt
    15901 gtatgcttaa caggatcaac atgcgtaagg acgacttatg aaaatagtga tcgcaccaga
    15961 ttcgtataag gaaagtttga gtgctcttga ggtagcgacc gccattgaac aaggatttcg
    16021 cgagatctgg cctgacgcgg attacctgaa attaccgctg gctgatggcg gagaaggtac
    16081 tgtcgaagcg atggttgaag cgacggcggg tcgaatcgtg catgttgagg tcaccgggcc
    16141 gttggggcat cgcgtcaatg cgttttatgg gctttccggc gatgcgcgtt ccgcgttcat
    16201 tgaaatggcg gccgccagcg ggctggagca ggtgccgccc gcgcaacgcg atccgttgaa
    16261 gaccacgtca tggggaaccg gcgagctgat ccgtcatgcg ctggatgcgg gcgttgagca
    16321 tatcattatt ggtatcggcg gtagcgccac caacgatggc ggcgcgggga tggtacaggc
    16381 gctgggtgcc aggctacggg atgcgcaggg caatgatatt gcgcaaggcg gcattgggct
    16441 ggaaacactc gccagcattg atatcagcgg cctggataag cgtttgtcgg cgtgccatat
    16501 agaggtcgcc tgcgatgtca cgaatcccct taccggcaaa gagggcgcgt ctgcagtttt
    16561 tggtccgcaa aaaggggcga cgccggaaat gattgaacgc ctagatacgg cattgactcg
    16621 ctatgcgcat ttgattgccc gcgatctgca tgtcgatgtg ttggatctgg caggcggcgg
    16681 cgcggcaggc ggcatggggg cggcgttata cgcgttttgc ggcgcgcagc tacggcgtgg
    16741 tattgagatt gtcaccgatg cgcttcatct ggaagcgtgt cttgcggatg ctgatttagt
    16801 catcaccggc gagggacgca tcgacagtca gaccattcac ggtaaagtcc ctattggcgt
    16861 ggcaaacatc gccaaacggt ataacaagcc ggtaattggt attgcgggta gcctgacggc
    16921 ggacgttggc gtggttcatg aacatgggct tgatgccgtt ttcagcgtga tttataccat
    16981 ctgcacgttg gaggacgcgc tgaagaatgc gagtgaaaac gtacgaatga ccgcgcgcaa
    17041 cgtggctgca acgctgaaag cggggcaaca attacgctga gttgtaggcc ggataaggcg
    17101 gtcacgccgc catccggcga atatcagcct aatatcttct tcgcttcacg cgcgacatta
    17161 tccatctcat ccagcagctc cagaaactca ggctccagct cctcttcgtg gacgccgctg
    17221 cgaagctgtt gctcaataag ctggcaaagg ttcttcatcc gcggtacgcc gctatagccg
    17281 cagctcccgt gtagcttatg gaccagatcg accaggccgt tgggattctc tcccaccagt
    17341 tgttcttcaa ttttgttgcg cacttccggc agaaaatcaa tcagcatttg cagcatatcc
    17401 cgtgccagat cgggcttacc ggcagcctgg cggagcgcaa gctgccagtc gagcgtcgca
    17461 ttcggattga agataaactc agccggttcc ggcgccatca ggcgcgctgc tacgttggcg
    17521 ccgggtttat agcgcagcaa cagattatgc aacttctctt cttctatcgg tttagccaga
    17581 tagtcgttca tgcccgcgct gagcaacttc tctttttgcc cggccatcgc atgtgccgta
    17641 acggcaataa ccggtgtttg ctgctgatga ggaagctggt gaattaactc gcaggcgcgt
    17701 atgccgtcca tatccggcat ctgaatatcc atcaaaatca gatcaaactg catttgtttc
    17761 gcccgatcca ccgcctgatg tccgctatca caaagctcta cgtgctggac tttatcttcc
    17821 agtaacgcgc cgataagctt cagattagcg ggattatcat caaccgccat aaccgtcatg
    17881 gtgattttac tggtatccat tagcagcggt tcaggatggt gattcaactg gcaatattct
    17941 gtcagcgctg gcaacaggcg cgttgacgtc aatggtttta acagacaggc tgccgcgcct
    18001 ccttgtttca gcttttcggc attaatttgc gcatggcaag gtagcgccag cagtagaaag
    18061 tccgtcattg acgctgcttt cgccagacgt tcatgctgca tggtgagcgg ctcgcggaag
    18121 gtcaccggaa cgctcaaaat cataatatcg tagtgcgcta acggcagcgc ggagaaggtc
    18181 gggctgtaaa tcacttccac cggcgtgtcg ctcagtagat ccagggtaca ttgcgcggcg
    18241 gtagcattcg gttcgatata agccagccgt ttcccggcca gacacgcggt cgacggcccg
    18301 tcaataatga catttgggtt aagatcaaga ttaatatgaa accagaaggt cgagccgcga
    18361 ttaggctggc tgtggaaaga gatatccccg cccatttcgt tgaccagctt ttgcgtaatc
    18421 accagcccaa gcccggtgcc gccgtgacgg cgagaaatac tggcatcggc ctggcgaaac
    18481 gcctgaaaca gtcgcgactg gtcgcgctcc ggaatgccga tccccgtatc gcggatctgc
    18541 acttcaatct gtactttggt gttactgagc gcccgctttt ctaccagaat gtcgatattg
    18601 ccactctcgg tgaacttaat ggcattgccc accagattag taatgacctg ttgcaggcgc
    18661 agcgggtcgc caatcacatt ttccgggacg tcgtttttaa tatttaacgt caactccagc
    18721 cctttatcat gcgacgagtg ggccagcagc gtaaccactt catccagcgt gttgcgcagt
    18781 ggaaaaggga tactttccag aatgagctta ccggcttcca gcttggagaa gtcgagcacg
    18841 tcattaatga ttgccagcag attattcgcg gaacgctcaa tggtgttcag atggtcgcgc
    18901 tgggtggggt tcagctccgt ttttaatgtc aggcgggtaa aaccaatgac gccgttcagc
    18961 ggtgttcgca gttcgtgcga catgttcgcc aggaactccg acttaatacg cgccgcttcc
    19021 tgggcgcgct ttttcgccag atccagctca acgttttgga tttccatctg ctcaagggtt
    19081 tcacgcaggt ccgaggtggc ctgatcgata ttatgctgca tctcttcgtg ataggcggca
    19141 agcgacatcg ccatggaatt aatgccgttt ttcagcatgt ccagctcgcc cagcataaat
    19201 ccttccacac ggctatccag ttgtccgcgg cgaatgcggt caacggtatt caccatatta
    19261 cggataggcc cggtgacatc gcgcataagc cgccagccaa agatcagcgc aatgccaata
    19321 caaaaaagca tcatcacgct ggagataaaa atctctttgt attgctgtag cctgaccgac
    19381 ttgagatcca gttcaagtgc cacatacccc agcatatttt tggtattttt cgcgtcggca
    19441 atcgctgact cgtccggcga atagctctcc gagataatcg gggtgcgcag aatcataata
    19501 tcgccgtggc gatcaacgct cagacgacgt ggaaacggcg ctccggcagg aagctgcatc
    19561 tgtgaggggt ccagatggaa attagacgtt acaaacaggc ggttatgatc gtcataaacg
    19621 gaaatcgccc gcacaatatc agagtgtctg cggtgcagga cgctgataag ttggccgata
    19681 gactcccggt tttgtaagtt cataccatat tcgctggaga cggcgagcgg ttcaataata
    19741 ctggcgccgg catcttccag ttgacgctgc aggtcgttat agcggtgcac tacaaaaaag
    19801 atactgagca gcaaacctat caggacggtc ggggccagga tcagaatcat catgcgtgcg
    19861 cgcaggctgt agttggtcat ggagttccgt tatgggacaa ttagggtcac actgttaaat
    19921 tgagaaaaag ctggtcgatg gcgcaattct actctgcaaa acggcgcgtg acgacgcgtc
    19981 agatcataac cgttaaagtc aatgacctcg attcatttgg tcagggcgta gcccgtcata
    20041 acggaaaggc gctgtttatc cccggtttat tgcctgagga aagcgcagaa gtcattatta
    20101 cagaagataa aaagcaattt gcccgcgcac gcgtttcgcg ccgtttgaat gatagcccgg
    20161 aacgagaaac gccgcgctgc ccgcattttg gcgtctgcgg cggttgtcag caacagcatg
    20221 tcggcatcga cctgcaacaa cgcagcaaaa gcgcggcgct ggcgcgttta atgaaacatg
    20281 aggtgaatga catcatcgcc ggcgcgtcct ggggttatcg gcgtcgtgcg cggttaagtc
    20341 tgaattgccc gccggataaa ccgctgcaaa tgggatttcg caaagcgggt tccagcgata
    20401 tcgtcaatgt cgaacagtgc cccgttttgg cgccccagct tgaagcattg ctgccccgca
    20461 tcagggcgtg tctggcgagt ttacacggca cccgacatct tgggcatgtt gagctggtac
    20521 aggcgggaag cggtacgctg atgattctgc gccataccgc gccattaagt gcggcggata
    20581 aagaaaaact ggaacgcttt tcgcattctg agggattgtc tctgttcctg gcgccgttta
    20641 gcgagatact ggaaacggta tctggcgaag cgccctggta tgattcgcac ggcttacgtt
    20701 taaccttcag tccgcgagac tttattcagg ttaatgaggc ggtaaaccag caaatggtcg
    20761 cccgcgcgct ggagtggctt gatgtgcgcg ccgaggatcg tgtcctggat ctgttctgcg
    20821 gaatggggaa ttttacgcta ccgctggcaa cgcgcgcggc aagcgtggta ggggttgagg
    20881 gcgttcaggc gctggtagaa aaaggccgtg aaaacgccat ccgcaatggt ttacataatg
    20941 tgacattctt ccacgagaac ctggaggaag atgtcacgaa gcagccgtgg gcgaaaaacg
    21001 gctttgacaa agtcttactc gatcctgcgc gtgcgggggc tacaggagtg atgcgacata
    21061 ttataaaatt aaaacctatt cgcattgttt atgtatcctg taacccggcg acgctggcgc
    21121 gcgatagtga agcgctggtc aatgcgggat atgaggttac gcgtttagcg atgctcgaca
    21181 tgttcccgca cacaggacat ctggaatcaa tggttctgtt cgagcgcatg taatgattac
    21241 cggcttaccg acttcggtag gcctggtccc ttaaggagag gacgatggtc gcggtaagaa
    21301 gtgcacatat taataaagct ggtgaatttg atccgaagaa gtggatcgca agcctgggaa
    21361 tttccagcca gcagtcgtgt gagcgcttag ccgaaacctg ggcgtattgc ctgcaacaga
    21421 cacaaggaca tccggatgcg gatctgttgc tgtggcgtgg cgtggagatg gtagaaattc
    21481 tttccacgct gagtatggat atcgacacgc tgcgggcggc gctactgttc cctctggccg
    21541 acgccaacgt agtcagcgaa gatgtactgc gcgaaagcgt tggcaaatct atcgttaccc
    21601 tgattcatgg cgtgcgcgat atggcggcga tccgccagtt aaacgccact cataacgact
    21661 ctgtttcttc ggagcaggtt gataacgtcc gtcgaatgtt attggcgatg gtggatgatt
    21721 tccgctgcgt ggtcatcaaa ctggccgagc gaatcgctca tttgcgcgaa gtgaaagagg
    21781 cgccggaaga tgagcgcgtg ctggcggcga aagaatgtac caacatctat gcgccgctcg
    21841 ctaatcgtct gggcatcggg caactgaagt gggaactgga agactactgt ttccgctacc
    21901 tgcatccggc ggaatacaaa cgcatcgcca aactgctgca tgaacgccgc ctcgatcgcg
    21961 aacattacat cgaagagttt gttggacatc tgcgcgccga aatgaaaaac gaaggcgtgc
    22021 aggcggaagt ctacggacga ccaaaacata tttatagcat ctggcgcaaa atgcagaaaa
    22081 agcatctggc gtttgatgaa ctctttgacg tgcgcgccgt gcgtatcgtc gctgaacgtc
    22141 tgcaagactg ctacgccgcg ttggggatag tgcatacgca ctatcgccac ctgccggatg
    22201 aattcgatga ttatgtcgct aacccgaaac cgaacggtta ccagtctatc cacaccgtgg
    22261 tcttggggcc gggcggtaaa accgttgaga tccagatccg taccaaacag atgcatgaag
    22321 acgccgaact gggtgtggcg gcgcactgga agtataaaga aggcgccgcg tccggcggcg
    22381 tgcgttccgg ccatgaagac agaattgcgt ggctgcgtaa gctgatcgcc tggcaggaag
    22441 agatggccga ttccggcgaa atgctggatg aagtgcgcag ccaggtgttt gacgatcggg
    22501 tctacgtttt tacgccaaaa ggcgacgtgg ttgacttgcc tgccggatct acgccgctcg
    22561 attttgctta ccacatccac agcgatgtcg ggcaccgctg catcggcgcg aaaattggtg
    22621 ggcgcatcgt accgtttacc taccagttac agatgggcga tcaggttgaa attatcactc
    22681 agaagcagcc gaatcccagc cgcgactggc tgaatccaaa cctgggctat gtgacgacca
    22741 gccgcggacg ctcgaaaatt cacgcctggt tccgtaaaca ggaccgtgac aaaaatatcc
    22801 tggctggacg gcagatcctc gacgatgagc tggcgcattt ggggattagc ctgaaagagg
    22861 ccgaaaaaca tctgctgccg cgctacaact ttaatgagct ggaagagttg ctggcggcga
    22921 taggcggcgg cgatatccgt cttaatcaga tggtgaattt cctgcaatcg cagttcaata
    22981 agccgagtgc agaggagcag gatgcagcgg cgctgaaaca gcttcagcaa aaaacatacg
    23041 cgccgcaaaa tcgtcgtaaa gacgacgggc gcgtggtggt ggaaggggtt ggtaacctga
    23101 tgcaccacat tgcccgctgc tgccagccga ttccggggga tgaaattgtc ggcttcatta
    23161 ctcaggggcg ggggatttcc gtgcaccggg ccgactgcga acagctggcg gaactgcgct
    23221 cccatgcgcc ggagcggatc gtagaggcgg tatggggcga aagctactcg gcgggatatt
    23281 cgctggtggt gcgcgtccag gccaacgatc gcagcggttt attgcgtgat atcaccacca
    23341 ttctggctaa cgaaaaagtc aacgtgctgg gcgtcgccag ccgcagcgac attaaacagc
    23401 agatcgccac cattgatatg accatcgaga tctacaacct gcaggtgctg ggccgcgtgc
    23461 tcggtaagct gaaccaggtg ccggatgtga ttgatgcacg gcgactgcac ggggggtaaa
    23521 ccccagacag taataatgta gcggctttgc tactcgttca gcaaagccgc attagccaac
    23581 cccataagca tgatatatga ggtatgtttt tgacgtacat ttcatttcag gtgtactctt
    23641 atgtaagatt tatacttaca gtggaggctg ttatggccag aacaatgacc gttgatcttg
    23701 gcgatgaatt gcgcgagttt attgaatcgc tcatagaatc aggtgattac agaacgcaaa
    23761 gtgaagtgat cagagagtct cttcgtctgc tgagggaaaa acaggccgag tcacgacttc
    23821 aggcgttacg tgaacttctg gctgaaggtc tgaacagcgg agagccgcag gcctgggaaa
    23881 aggatgcctt tttacggaag gtcaaaacag ggatgatcaa acccgatgag aacggtaaaa
    23941 ttaacgccaa aggccagtga agatctggaa aatatctggc attacggctg gcagcatttt
    24001 ggtgaaatac aggccgatcg atatattcat catctatcag aaatattcag cattatgagt
    24061 gccaataaca ttggcacgcc tcgacctgaa ctgggtgaat acatttatgc cttaccgttt
    24121 gaaaggcata ttatctattt tatataatca gttacggaag ttatcgtgat acgtattctg
    24181 agccagaatc aggatgctgg taagcatgta aattggttat agccttttta agttatactc
    24241 tatgtgatat cggttaaggt tttatgtgtt tgaaatacgt aacacctatt ctgaatttta
    24301 ttcattacta tagtatttat tctatgaata attagctatg agtctggatc taagcttctt
    24361 cattctttat ctgttctcat cattaactct tttcgccctg cgattctgga tctgtttttt
    24421 catctatccc gtgaggggct gacctccttt ctggtatgcc gaagcgttcc ctgtacaacc
    24481 aaaaagaaag at
//
LOCUS       DAJVSD010000042        24348 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.042, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000042 DAJVSD010000000
VERSION     DAJVSD010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 24348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24348
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.042"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            249..1781
                     /locus_tag="OQP62_001413"
     CDS             249..1781
                     /locus_tag="OQP62_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460760.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpoVR family protein"
                     /protein_id="HCS1721001.1"
                     /translation="MAMIDSMNKDTTRLSDGPDWTFDLLDVYLAEIDRVAKLYQLDTY
                     PHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNP
                     CIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARNYITRC
                     EERYGVDEVEKLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWR
                     TLPKREEEKTVAEARRFPAEPQENLLYFMEKNAPLLEPWQREILRIVRKVSQYFYPQK
                     QTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINP
                     YALGFAMFQDIKRICQSPTDEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPK
                     VMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRSKLSSQYNLSNLEPNIQVWNVDLR
                     GDRSLTLRYIPHNRAPLDKGRKEVLKHVHRLWGFDVMLEQQNEDGSVELLERCPPRMN
                     TL"
     gene            complement(1828..2547)
                     /gene="fadR"
                     /locus_tag="OQP62_001414"
     CDS             complement(1828..2547)
                     /gene="fadR"
                     /locus_tag="OQP62_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid metabolism transcriptional regulator
                     FadR"
                     /protein_id="HCS1721002.1"
                     /translation="MVIKAQSPAGFAEEYIIESIWNNCFPPGTILPAERELSELIGVT
                     RTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLL
                     SVRTNISTIFIRTALRQHPDKAQEVLATAHEVADHADAFADLDYNIFRGLAFASGNPI
                     YGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSSLCEQGAHDQVYETVRRYGHD
                     SGEIWHRMQKNLPGDLAIQGR"
     gene            2767..4311
                     /gene="nhaB"
                     /locus_tag="OQP62_001415"
     CDS             2767..4311
                     /gene="nhaB"
                     /locus_tag="OQP62_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter NhaB"
                     /protein_id="HCS1721003.1"
                     /translation="MEISWGRAMWRNFLGQSPDWYKLALLVFLIVNPFIFLANPFVAG
                     WLLVAEFIFTLAMALKCYPLLPGGLLAIEAVIIGMTSAAHVREEVAANLEVLLLLMFM
                     VAGIYFMKQLLLFIFTRLLLSIRSKMVLSLAFCVAAAFLSAFLDALTVVAVVISVAVG
                     FYGIYHRVASSRGEENDMLDDSHIDPHYKTVLEQFRGFLRSLMMHAGVGTALGGVMTM
                     VGEPQNLIIAKAAGWHFGDFFLRMSPVTVPVLVCGLLTCMLVEKMRWFGYGETLPEKV
                     RDVLQQFDDQSRKKRTRQDKIKLIVQAVIGVWLVTALALHLAEVGLIGLSVIILATAL
                     TGVTDEHAIGKAFTESLPFTALLTVFFSIVAVIIDQHLFAPIIQFVLQASEHAQLTLF
                     YLFNGLLSSISDNVFVGTIYINEAKAAMENGAISLKQFELLAVAINTGTNLPSVATPN
                     GQAAFLFLLTSALAPLIRLSYGRMVWMALPYTIVLTLIGLLCVEFTLAPATEWMTQAG
                     WLATLS"
     gene            4453..4983
                     /gene="dsbB"
                     /locus_tag="OQP62_001416"
     CDS             4453..4983
                     /gene="dsbB"
                     /locus_tag="OQP62_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbB"
                     /protein_id="HCS1721004.1"
                     /translation="MLRFLNQCSRGRGAWLLMAFTALALEMVALWFQHVMLLKPCVLC
                     IYERCALFGVMGAGLVGAIAPKTPLRYVAMVIWIYSAWRGLQLAYEHTMIQLHPSPFM
                     TCDFMARFPDWLPLGKWLPQVFVASGDCAERQWSFLTLEMPQWLLGIFAAYLVVAIAV
                     VIAQAFKPKKRDLFGR"
     gene            5091..5432
                     /locus_tag="OQP62_001417"
     CDS             5091..5432
                     /locus_tag="OQP62_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1971 domain-containing protein"
                     /protein_id="HCS1721005.1"
                     /translation="MSHLRIPANWKVKRSTPFYTKENVPAALLSHHNTAAGVFGQLCV
                     MEGTVTYYGFANETATEPEVKVVINAGQFATSPPQYWHRVELSDDARFNIHFWVEEDH
                     QGEEMYQQKKA"
     gene            complement(5504..5677)
                     /locus_tag="OQP62_001418"
     CDS             complement(5504..5677)
                     /locus_tag="OQP62_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module toxin, GnsA/GnsB family"
                     /protein_id="HCS1721006.1"
                     /translation="MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETM
                     KGLEGYHVKIKLL"
     gene            complement(5869..6006)
                     /locus_tag="OQP62_001419"
     CDS             complement(5869..6006)
                     /locus_tag="OQP62_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721007.1"
                     /translation="MSERPDLVDPLPEDEPLPGENIPDTPEGDDPLDPDTQNEVEDPR
                     R"
     gene            complement(6358..6804)
                     /locus_tag="OQP62_001420"
     CDS             complement(6358..6804)
                     /locus_tag="OQP62_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309703.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HCS1721008.1"
                     /translation="MSDTPFWQRKTLDEMTDAEWESLCDGCGQCCLHKLMDEDTDEIY
                     FTNVACRQLNIKTCQCRHYERRFEFEPDCIKLTRENLPDFEWLPMTCAYRLLAEGKPL
                     PTWHPLQTGSKAAMHGERISVRHIAVKESEVRDWQDHILNKPSWAE"
     gene            complement(6897..7556)
                     /locus_tag="OQP62_001421"
     CDS             complement(6897..7556)
                     /locus_tag="OQP62_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HCS1721009.1"
                     /translation="MYQHRNWQGALLDYPVSKVVCVGSNYANHIKEMGSATPEEPVLF
                     IKPETALCDIRQPLAIPADMGAVHHEVELAVLIGATLRQATEDHVRKAIAGYGVALDL
                     TLRDIQGKMKKAGQPWEKAKGFDNACPISGFIPVAAFCGDPQNTVIGLNVNGEVRQQG
                     STADMIHPIVPLIAYMSRYFTLKAGDVVLTGTPAGVGPLLSGDELDIRFNGETLSTRV
                     L"
     gene            complement(7606..7899)
                     /locus_tag="OQP62_001422"
     CDS             complement(7606..7899)
                     /locus_tag="OQP62_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001667868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgL domain-containing protein"
                     /protein_id="HCS1721010.1"
                     /translation="MFCVIYRSSKRDQTYLYVEKKDDFSRVPDALMKGFGQPQLAMML
                     PLDGRKKLVNAELEKVKQALSEQGYYLQLPPPPEDLLKQHLSSVGQNTSHADR"
     gene            8025..8732
                     /gene="minC"
                     /locus_tag="OQP62_001423"
     CDS             8025..8732
                     /gene="minC"
                     /locus_tag="OQP62_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HCS1721011.1"
                     /translation="MSNTPIELKGSSFTLSVVHLHEAEPEVIRQALEDKIAQAPAFLK
                     HAPVVINVSGLESPVNWPELHKIVTSTGLRIIGVSGCKDASLKVEIDRMGLPLLTEGK
                     EKAVRPAPVEPATPSEPPQNANPITKTRLIDVPVRSGQRIYAPQCDLIVTSHVSAGAE
                     LIADGNIHVYGMMRGRALAGASGDREAQIFCTHLTAELVSIAGVYWLSDKIPAEFYGK
                     AARLRLADNALTVQPLN"
     gene            8756..9568
                     /gene="minD"
                     /locus_tag="OQP62_001424"
     CDS             8756..9568
                     /gene="minD"
                     /locus_tag="OQP62_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020801817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HCS1721012.1"
                     /translation="MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLR
                     NLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLFILPASQTRDKDALTREGV
                     AKVLDSLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGIL
                     ASKSRRAENGEEPIKEYLLLTRYNPGRVNKGDMLSMEDVLEILRIKLVGVIPEDQSVL
                     RASNQGEPVILDATADAGKAYADTVDRLLGEERPFRFIEEEKKGFLKRLFGG"
     gene            9572..9838
                     /gene="minE"
                     /locus_tag="OQP62_001425"
     CDS             9572..9838
                     /gene="minE"
                     /locus_tag="OQP62_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HCS1721013.1"
                     /translation="MALLDFFLSRKKSTANIAKERLQIIVAERRRSDAEPHYLPQLRK
                     DILEVICKYVQIDPEMVTVQLEQKDGDISILELNVTLPEAEESK"
     gene            complement(9960..11087)
                     /gene="rnd"
                     /locus_tag="OQP62_001426"
     CDS             complement(9960..11087)
                     /gene="rnd"
                     /locus_tag="OQP62_001426"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HCS1721014.1"
                     /translation="MNYQMIETDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLI
                     QLFDGANVALIDPLGISDWSPLKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLID
                     TQILAAFCGRPLSWGFASMVEEYTGVALDKSESRTDWLARPLSERQCEYAAADVWYLL
                     PIAKKLMIETEAAGWLPAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLACLQ
                     LLADWRLRKARERDMAVNFVVREENLWAVARYMPGSLGELDSLGLSGSEIRFHGKTLI
                     SLVAKAQALPEEALPEPLLNLMDMPGYRKAFKAIKALVAEVSASHHVSGELLASRRQI
                     NQLLNWHWKLKPQNGQPELISGWRAELMAEKLTLLLQEYSL"
     gene            complement(11160..12845)
                     /gene="fadD"
                     /locus_tag="OQP62_001427"
     CDS             complement(11160..12845)
                     /gene="fadD"
                     /locus_tag="OQP62_001427"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase FadD"
                     /protein_id="HCS1721015.1"
                     /translation="MKKVWLNRYPADVPAEINPDRYQSLVELFEHAATRYADQPAFVN
                     MGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVV
                     NVNPLYTPRELEHQLNDSGAAAIIIVSNFAHTLEKVVEKTSVQHVILTRMGDQLSTAK
                     GTVVNFVVKYIKRLVPKYHLPDAISFRSALQHGYRMQYVKPEVVAEDLAFLQYTGGTT
                     GVAKGAMLTHRNMLANLEQVKATYGPLLHPGKELVVTALPLYHIFALTMNCLLFIELG
                     GQNLLITNPRDIPGLVKELAKYPFTAMTGVNTLFNALLNNKEFQQLDFSSLHLSAGGG
                     MPVQNVVAERWVKLTGQYLLEGYGLTECAPLVSVNPHDIDYHSGSIGLPVPSTEAKLV
                     DDDDNEVAPGEAGELCVKGPQVMLGYWQRPDATDEIIKDGWLHTGDIAVMDEDGFLRI
                     VDRKKDMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGVPSGSSGEAVKLFVVKKDPAL
                     TDDALITFCRRHLTGYKVPKQVEFREELPKSNVGKILRRELRDEARGKVDNKA"
     gene            complement(13050..13631)
                     /locus_tag="OQP62_001428"
     CDS             complement(13050..13631)
                     /locus_tag="OQP62_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Slp family lipoprotein"
                     /protein_id="HCS1721016.1"
                     /translation="MAVQKRLIKGALACAFALMLSGCVTIPDAIKGSSPTPQQDLVRV
                     MNAPQLYIGQEARFGGKVVAVQNQQGKTRLEIATVPLDSGARPVLGEASRGRIFADVN
                     GFLDPVDFRGQLVTVVGPITGTVDGKIGNTPYKFMLMQATGYKRWHLVQQVVMPPQPI
                     DPWFYGGRAWPYGYGGWGWYNPGPAEVQTIVTE"
     gene            complement(13702..14397)
                     /gene="tsaB"
                     /locus_tag="OQP62_001429"
     CDS             complement(13702..14397)
                     /gene="tsaB"
                     /locus_tag="OQP62_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HCS1721017.1"
                     /translation="MRILAIDTATEACSVALWNNGTINAHFELCPREHTQRILPMVQE
                     ILAASGASLNEIDALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGVSTLATMAQGA
                     WRKTGATRVLAAIDARMGEVYWAEYQRDAQGVWQGEETEAVLKPERVGERLKQLSGEW
                     ATVGTGWSAWPDLAKECGLTLHDGEVSLPAAEDMLPIASQKLAAGETVAVEHAEPVYL
                     RNEVAWKKLPGKE"
     gene            complement(14455..16365)
                     /locus_tag="OQP62_001430"
     CDS             complement(14455..16365)
                     /locus_tag="OQP62_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HCS1721018.1"
                     /translation="MTDDFAADGQLAKAITGFKPREPQRQMAVAVTQAIENAQPLVVE
                     AGTGTGKTYAYLAPALRAGKKVIISTGSKALQDQLYSRDLPTVAKALAFTGKTALLKG
                     RSNYLCLERLEQQALAGGDLPVQTLSDVILLRSWSNQTRDGDISTCVSVAEDSQAWPL
                     VTSTNDNCLGSDCPLYKECFVVKARKKAMDADVVIVNHHLFLADMVVKESGFGELIPQ
                     AEVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLA
                     QSAQDFRLQLGEPGYRGNLRELLADSRIQRAFLLLDDTLELCYDVAKLSLGRSALLDA
                     AFERATLYRSRLKRLKEINQPGYSYWYECTSRHFTLALTPLTVADKFKEVMEQKPGSW
                     IFTSATLSVNDDLHHFTARLGIEQAESMLLPSPFDYTRQALLCVPRNLPQTNQPGAAR
                     QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV
                     SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD
                     EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA
                     RAVRFLAIPSAE"
     gene            16497..16841
                     /locus_tag="OQP62_001431"
     CDS             16497..16841
                     /locus_tag="OQP62_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HCS1721019.1"
                     /translation="MSIVRIDAEDRWSDVVIYNNTLWYIGVPENLDADAFEQTANTLA
                     QIDAVLEKQGSSKSRILDATIFLSDKADFAAMNKAWDAWVVAGHAPVRCTVQAGLMNP
                     KYKVEIKIVAAV"
     gene            complement(16847..17026)
                     /locus_tag="OQP62_001432"
     CDS             complement(16847..17026)
                     /locus_tag="OQP62_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaH family protein"
                     /protein_id="HCS1721020.1"
                     /translation="MFAGLPSLSHEQQQKAVERIQELMSQGMSSGEAIAQVAGELRAN
                     HTGERIVARFEDEDE"
     gene            17107..18471
                     /gene="pabB"
                     /locus_tag="OQP62_001433"
     CDS             17107..18471
                     /gene="pabB"
                     /locus_tag="OQP62_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component 1"
                     /protein_id="HCS1721021.1"
                     /translation="MMKTLSPTVITLPWRPDAAEHYFAPVNHLPWAMLLHSGDAIHPY
                     NRFDILVADPVTTLTTRAQETTVCTARTTTVTLDDPLHVLQTQLEALPFHPQPDPDLP
                     FQGGALGLFGYDLGRRFEILPDTAARDIALPDMAIGLYDWALIVDHHKQVVSLISYHD
                     ADARYRWLTGQRAPTRTPFRLTSAWQSNMTRCEYGEKFRQVQAWLHSGDCYQVNLSQR
                     FQASYEGDEWQAFERLNRANRAPFSAFLRLHDGAILSLSPERFIQLENGHIQTRPIKG
                     TLPRLNDPQADRQQAQKLANSMKDRAENLMIVDLMRNDIGRVAVPGSVKVPELFVVEP
                     FPAVHHLVSTITARLPDSLHATDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWC
                     GSIGYLSFCGKMDTSITIRTVTATQGQLYCSAGGGIVADSNEEAEYQETFDKVNRILH
                     PLEN"
     gene            18475..19053
                     /locus_tag="OQP62_001434"
     CDS             18475..19053
                     /locus_tag="OQP62_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HCS1721022.1"
                     /translation="MDTSRLTLDHFLSRFQLLRPQMTHETLNQRQAAVLIPVVRRPQP
                     GLLLTQRAIHLRKHAGQVAFPGGAVDSTDASLIAAALREAQEEVAIPPQAVEVIGVLP
                     PVDSVTGFQVTPVVGIIPPNLPWRASEDEVSAVFEMPLAQALQLGRYHPLDVYRRGNS
                     HRVWLSWYEHYFVWGMTANILRELALQIGVKP"
     gene            19317..20681
                     /gene="sdaA"
                     /locus_tag="OQP62_001435"
     CDS             19317..20681
                     /gene="sdaA"
                     /locus_tag="OQP62_001435"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HCS1721023.1"
                     /translation="MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDNVTR
                     VAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDIDSIPGFIRDVETRERLLLAQGR
                     HEVDFPKDDGMRFHNGNLPLHENGMQIHAWHDDTVIYSKTYYSIGGGFIVDEAHFGQE
                     ATNEVTVPYPFKSAKEMLEYCNSTGLSLSGMVMQNELALHSKKEIEEYFGHVWQTMQA
                     CIDRGMNTEGVLPGPLRVPRRASALRRMLVSSDKLSSDPMNVIDWVNMFALAVNEENA
                     AGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFLAAGAIGALYKMNASISG
                     AEVGCQGEVGVACSMAAAGLAELLGASPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPC
                     IERNAIASVKAINAARMAMRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIK
                     VQCD"
     gene            20819..22420
                     /locus_tag="OQP62_001436"
     CDS             20819..22420
                     /locus_tag="OQP62_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001192512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HCS1721024.1"
                     /translation="MQTAQRIINHYRRNRFIVCTICALVTLILTLNIRFISERNLNHH
                     RTVAFANHAVDALDNVLHPLLVGRNILLPLLELPCATAHLPLRKQAARLQTIRSIGLV
                     KEGILYCSSIFGARNTPIRQLQPDLPAAGDLLLLSTDQSLLKGSPILIQWYPASADGQ
                     DGVMEIVNIDLLATMLLEPQQPQITSASLTVGKRHLLYGRGVVDTLPELKKDEERYQL
                     SSRHFPFTISVSGPSAGVLAFKHLPTQLPLAVLLSLLIGYIAWLATASRMSFSWEINL
                     ALAEREFELFCQPLLNARTQQCTGVEILLRWNNPRQGWISPDVFIPITEEHNLIAPLT
                     RYVIAETIRQRHYFPINHQFHIGINVAASHFRHGVLLKDLNQYWFSAEPVQQLVLELT
                     ERDALLDVDYRLMRELHRKGVKLAIDDFGTGNSSLSWLEKLRPDILKIDKFFTAVIGT
                     DAVNSTVTDIIIALGQRLNIELVAEGVENQTQAQHLRQHGVQMLQGYLYAKPMPISEF
                     PQWLAGSAPPPARHNGQIMSAMPHL"
     gene            complement(22442..24001)
                     /gene="yoaE"
                     /locus_tag="OQP62_001437"
     CDS             complement(22442..24001)
                     /gene="yoaE"
                     /locus_tag="OQP62_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460784.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family cation transport protein YoaE"
                     /protein_id="HCS1721025.1"
                     /translation="MELLMDPSIWVGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRD
                     KARLIGLSLALIMRLALLSIISWLVTLTKSLFTVWDFTFSGRDLIMLLGGIFLLFKAT
                     TELHERLENREHDTGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA
                     VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAI
                     GFSIVIEVFNQIARRNFIRHQSTLPLRARTADAILRLMGGKRQASMQHETDSPAAISV
                     SEGAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLSVAEIRQQLLSSPHSLF
                     PVCRGELDEIIGIVRAKELLVALEEGADVAAIAASSPAIVVPETLDPINLLGVLRRAR
                     GSFVIVTNEFGVVQGLVTPLDVLEAIAGEFPDADETPEIVADAEGWIVKGGTDLHALQ
                     QALEVDHLVNEEGDIATVAGLVIAANGHIPRVGDVIDVPPLRITIVEANDYRVDLVRI
                     VKEQPAHDEEE"
BASE COUNT         5713 a         6613 c         6161 g         5861 t
ORIGIN      
        1 tatgactttt ttatggtgac gtgcttcaca tataccctaa agacaagcga tcccattggt
       61 ttgggatctc ctgctacgcg gcatggctat acagcataaa atgatgccaa tacccgattt
      121 tttgccgttc aatgtggagg aaatcgcaaa gaaaagtttt cacgatcaag tcgtttttta
      181 acatggtgtt ctatgcttga aaggaggcgc tccatacaga gagcgtcgcc aacaatgagg
      241 gtgcgcgaat ggcaatgatt gattccatga acaaggacac cacacgtttg agcgatggcc
      301 ccgactggac atttgatctg ctggatgttt atctggcaga gatagaccgc gtggcgaaac
      361 tctaccaact ggatacttac ccgcaccaaa ttgaagtcat cacttccgaa cagatgatgg
      421 acgcctactc cagcgtcggg atgccgatca actatccgca ctggtcgttt ggcaaaaagt
      481 tcattgagac ggaacgtctg tataagcatg gtcaacaagg actggcttat gaaattgtga
      541 tcaactctaa tccctgcatt gcctacctga tggaagagaa caccatcacc atgcaggcgc
      601 tggtcatggc gcacgcctgt tacggccaca actccttttt taaaaataat tatctcttcc
      661 ggagctggac ggatgccagc tctatcgtcg attacctgat tttcgcccgg aattacatta
      721 cccgctgtga agaacgctac ggagtggatg aagtagaaaa actgctcgac tcctgccacg
      781 cgctgatgaa ttacggcgtc gatcgctata agcgcccgca gaaaatctcg ttgcaggaag
      841 agaaagcgcg acaaaaaagc cgggaagagt atctacaaag ccaggtgaat atgctgtggc
      901 gcacgctgcc aaaacgcgag gaagaaaaaa ctgtcgccga agcacgccgc tttcctgctg
      961 aaccgcagga aaacctactc tattttatgg agaaaaacgc cccgttgctc gagccgtggc
     1021 agcgcgaaat tctgcgcatc gtgcgtaaag tcagccagta tttttatccg cagaaacaga
     1081 cgcaggtcat gaacgagggc tgggcgacct tctggcacta caccatcctg aaccatctgt
     1141 atgatgaagg caaagtgacg gaacgcttta tgctggagtt tttacacagc cataccaatg
     1201 tcgtatttca gccgccctat aatagcccct ggtatagcgg aattaacccc tatgcgctcg
     1261 gctttgccat gttccaggat atcaaacgta tttgtcagtc gcccacggat gaagataaat
     1321 actggtttcc ggatattgcc ggttccgact ggctggaaac gctgcacttc gccatgcgcg
     1381 attttaaaga tgaaagcttt atcagtcagt tcctgtcgcc aaaagtgatg cgtgatttcc
     1441 gtttcttcac ggtacttgat gatgacaggc ataattatct ggagatctcc gccattcata
     1501 acgaagaagg ttatcgggag attcgatcaa aactgtcgtc acagtataac ctgagcaacc
     1561 tggagccgaa tattcaggtc tggaatgtgg atttacgcgg cgacagatcg ctgacgttgc
     1621 gttatatccc gcataaccgc gcgccgctgg ataaaggccg caaagaggtg ctgaaacatg
     1681 tgcatcggtt atggggcttt gatgtgatgc tggagcaaca aaatgaggat ggcagcgtag
     1741 aactgctgga gcgttgtccg ccgcgcatga acacgctgta atcgagatgc tgcccggtag
     1801 tgtttgcgtc taccgggcat cgcgggatta tcgtccctga atcgctaaat cgccgggcag
     1861 atttttctgc atccgatgcc aaatctcgcc gctgtcatgc ccataacgcc gcaccgtttc
     1921 atacacctgg tcgtgcgcgc cctgctcgca taacgacgat aatttatgat agaaacccag
     1981 tgccagactg cgcgcttccg gattggcgaa atagtggcga ccaatgcggg tgtataaccc
     2041 tttcatgccg ttcaggatca agccgtaaat aggattgccg gaggcaaatg ccagaccacg
     2101 aaagatgtta tagtccagat cggcgaatgc atcggcatgg tcggccactt cgtgggcagt
     2161 ggccagcact tcctgcgcct tatccgggtg ttgacgcaat gcggtacgaa taaagatagt
     2221 agaaatattg gtacgcaccg acaacaaatt gtcgatcagt tgcggaacgc tttcatgatc
     2281 aaggcgggcc agcgtttcaa ggatattcag ccctgacgtt tcccaaaaat tattaacctt
     2341 tgtcggtttg ccatgctgaa tggtcagcca gccatctcgc gccagccgct gtaacacctc
     2401 gcgtaatgtc gtgcgcgtca cgccgatcag ttcggagagt tctcgttctg ccggtaagat
     2461 cgtgccagga ggaaagcagt tattccagat actttcaata atatactctt ccgcgaaacc
     2521 cgcggggctc tgcgccttaa tgaccatagt gagatttcca ttacacagca aaacatagtt
     2581 gtactcatca taccagacgg gcgtaacacc tgatagcgga cgcaatgaag aaaaagggga
     2641 tcaaggcacc atttctgata tcgcctgcca atatcgttaa ggacttgctt gcattcgtcg
     2701 cgctcgctac tctctgtgtt taaacataaa aacgctattt catttttcta ggtaaggaaa
     2761 aatttcatgg agatctcatg gggtcgcgcc atgtggcgca actttttagg ccagtcgccc
     2821 gactggtaca aactggcact acttgtcttt ttaattgtta acccattcat tttcttagct
     2881 aatccctttg ttgctggttg gctgctggtg gcagagttta tcttcaccct ggcgatggcg
     2941 ttaaagtgtt accccctgct gcccggcggg ttactggcca ttgaagccgt tatcatcggc
     3001 atgaccagcg ccgcccatgt acgtgaagag gttgccgcca acctggaagt cttgctgctg
     3061 ctgatgttta tggtggcagg catctacttt atgaagcagt tattgctgtt tatttttacc
     3121 cgtctgttac tcagtatccg ctcgaagatg gttctgtcgc tggccttttg cgtcgccgcc
     3181 gcattcttgt cggctttcct tgacgcgctt accgtcgttg cggtggtgat cagcgtcgcc
     3241 gtcggttttt acgggattta ccatcgtgtg gcctcatcgc gcggcgaaga gaacgatatg
     3301 ctggacgaca gccatatcga tccgcattac aaaacggtgc tggagcaatt ccgcggattc
     3361 ttgcgtagtc tgatgatgca tgcaggcgtg gggacggcgc tgggcggcgt catgaccatg
     3421 gtcggggagc cgcaaaacct gatcatcgct aaagctgctg gctggcattt cggcgacttc
     3481 tttttgcgga tgtcgcctgt caccgtcccg gtactggtat gtggactgtt aacctgtatg
     3541 ctggtcgaga aaatgcgctg gtttggctat ggcgaaacgt tgcccgaaaa agtccgcgac
     3601 gtcttgcagc aattcgacga tcaaagccgt aagaagcgca cccgccagga taaaattaaa
     3661 ctaatagtcc aggcggttat tggcgtctgg ctggttaccg ccctcgccct ccatctcgcg
     3721 gaggtgggac tgattggtct gtcggtcatt attctggcca ccgcgttaac gggtgtcacc
     3781 gatgaacacg ccatcggcaa agcgtttacc gagtcgctgc cgtttactgc gctgttaacc
     3841 gttttcttct ctattgtggc ggttattatc gatcaacatc ttttcgcgcc gattattcag
     3901 ttcgtcttgc aagcctctga acacgcacag ctaacgctgt tctatctctt taacggcctg
     3961 ttgtcttcca tctcagataa cgtctttgtc ggcaccattt atatcaacga agcgaaggcg
     4021 gcaatggaaa acggcgcaat cagcttaaaa cagtttgagc tgctagctgt ggccatcaat
     4081 accggtacta acctgccatc ggtagcgacg ccaaatggtc aggcggcatt cttattcctg
     4141 ctgacctccg cgctggcgcc gttaatccgt ctctcctatg gccgtatggt ctggatggcg
     4201 ttaccgtaca ctatcgtact gaccctgata gggctactgt gcgtcgaatt cactcttgcg
     4261 ccggccaccg aatggatgac tcaggcagga tggttagcaa cgctttcgta acgtttggcc
     4321 gggcaataca ccgcccggct ccgatttttg cctgataatt atccaattac acattatttc
     4381 atttcccgct agtggcgcac gaattgaatt ggtttacact gcggtctcta cgcatgttgc
     4441 agggaaatta ttatgttgcg atttttaaac cagtgctcac ggggtcgggg cgcatggtta
     4501 ctgatggcgt ttaccgccct ggcgctggaa atggtggcgc tgtggttcca gcacgtcatg
     4561 ttacttaaac cttgcgtgct atgtatttac gaacgttgcg ccctgtttgg cgtgatgggc
     4621 gcgggtctgg tcggcgcaat agcgccgaaa acgccgctgc gatacgtggc aatggttatc
     4681 tggatttaca gcgcctggcg gggtctacaa ctggcgtatg aacatacgat gattcagttg
     4741 catccctcgc cgttcatgac ctgtgacttt atggcgcgct ttccagactg gttaccgttg
     4801 ggtaaatggc taccgcaggt gtttgtggca tccggtgatt gcgccgagcg ccagtggtcg
     4861 tttttaacgc tggagatgcc gcaatggctg ttggggatct ttgccgctta ccttgtggta
     4921 gcgatagctg tcgtcatagc tcaggcattt aagcctaaaa aacgcgacct gttcggtcgt
     4981 tgatacacac gctccttcgg gagcgttttt ttgcccgaag cgttgtttgc cagtgattaa
     5041 aaggtgtata ttaaatacat cttttaatca ccacatcagg gagatgtctt atgtcccact
     5101 tacgcatccc ggcaaactgg aaagttaaac gctctacccc cttttacacc aaagagaatg
     5161 ttccggcggc actgctctct catcacaaca cagcggcagg cgttttcgga caactctgcg
     5221 tgatggaagg caccgtgacc tactatggct ttgcgaatga aaccgcgaca gaaccagaag
     5281 tgaaagtggt gattaatgcc gggcaattcg ccaccagtcc gccgcaatac tggcatcggg
     5341 tagagctgag cgatgatgcg cggttcaaca ttcatttttg ggtagaggaa gaccatcagg
     5401 gcgaggaaat gtatcaacag aaaaaagcct gacatcggta aaccagttac cactgggcgg
     5461 cgtcccgccc agtagccagg tgattaatgg cgctaattaa acgctagagt agtttaattt
     5521 taacgtggta tccctcaagc cctttcatcg tttctcgcgg cgcgaactct atttcggaaa
     5581 cctcttgccc ggttttcttc cgtagttcgg cgaccttttt gctaatgagt gccgcgattt
     5641 cctcttctgc tttatgtgtc aactcttcgc tgttcattga tttcctcctt tgaactcgca
     5701 aacggctaag cgcaataaga cagtgtcgtc atggacgcgc tactatttta acgtacaaaa
     5761 aattataggc tatctttctg aggattatca ggatgtttcg ctttagaaga tgcaaaaaac
     5821 cgcctggcac agacggtgca tcaggcggtt ggttaatagc acaagacgct atctacgagg
     5881 atcttcaacc tcattctggg tatccgggtc gagaggatcg tctccctctg gcgtatccgg
     5941 aatattttca ccaggaagcg gctcatcctc tggtaatgga tcgactaaat caggacgttc
     6001 agacataaag cctccaacga accatagtta ttaaagatac cctacagcac tacttttggt
     6061 ttttctttgg attttttcct tcgtcttcgg gtgtcttatc aggcttcctg ggctgatcct
     6121 ttgaaacgcg caacggttgg ttattcatgg ggtaactcct caggataggc agcgatatac
     6181 tgctttgaaa gtatagagtc gccgccatac gtgcgcgagc gcagcgacaa ggcgcgtcag
     6241 ggaagaatag aaggcagtga taacgccagg tgacggaatt tgcacgcaat tcctgatttc
     6301 aggggccgcc cagcgtaaat taaagaattg taaacaatca gccgttttgc cgaagactta
     6361 ttctgcccac gacggtttat ttaaaatatg atcctgccag tcccgtactt cggattcttt
     6421 aaccgcgata tgacggacag aaattcgctc gccatgcata gcggctttcg atccagtctg
     6481 cagcggatgc cacgtcggca agggcttacc ttccgccaac aaacggtagg cgcaggtcat
     6541 cggcaaccat tcaaagtctg gcaagttttc gcgagtgagt ttgatacagt cgggttcaaa
     6601 ttcaaaacgg cgttcataat gacggcactg gcacgttttg atatttaatt gcctgcacgc
     6661 cacgttggtg aagtagattt catctgtatc ttcatccatc agcttatgca ggcagcattg
     6721 accgcagcca tcgcacagcg actcccactc ggcatcggtc atttcatcca gggttttacg
     6781 ttgccagaaa ggtgtatcgc tcattaaagt atccgccatt gcattaaagc tgcaccttat
     6841 aaccagtctg gcctgcagat gcaagtttta ccgccgctga aggcggcaag cagattttac
     6901 agaacgcgag tagacaacgt ttcgccatta aaacgaatgt ccagctcatc gccgcttaat
     6961 aatggcccca cgcctgccgg cgtgccggtt agcaccacgt ccccggcttt gagcgtaaaa
     7021 tagcggctca tataggcgat aaggggcaca ataggatgaa tcatatccgc ggtcgaccct
     7081 tgctggcgaa cctcgccatt aacgttaagt ccgataaccg tattttgcgg atcgccgcag
     7141 aaggccgcga cagggatgaa gcctgaaatc ggacatgcgt tatcgaaacc tttggctttt
     7201 tcccaaggct gtccggcctt tttcattttc ccttgaatat cgcgcagggt taaatcaagc
     7261 gccacgccat aaccggctat cgctttacgt acatgatctt cggtcgcctg gcggagcgtt
     7321 gcgccaatca gcacggcaag ctcaacttca tgatgaacag cgcccatatc cgccggaatc
     7381 gccagcggct ggcgaatatc acacaatgcg gtttccggct tgataaaaag cacgggttct
     7441 tccggcgtcg cgctgcccat ctccttgatg tgatttgcgt aattactgcc cacgcagacc
     7501 accttactta ccgggtaatc aagcaaggca ccttgccagt tacgatgttg atacatattt
     7561 tcccctaaga tcatgatgga attcaggcgc ggcgccgaat accgtttaac ggtcagcgtg
     7621 cgacgtattt tgtcccaccg aagaaagatg ttgtttcagc aaatcttccg gcggcggcgg
     7681 caattgtaaa taatagccct gctcgcttaa cgcctgtttt actttttcga gctcggcatt
     7741 gactaatttt ttacgtccat caagcggcag catcatcgct aactgcggct gaccgaatcc
     7801 tttcatcaac gcgtcaggca cccgcgaaaa atcgtctttt ttttcgacat acaaataggt
     7861 ttgatcgcgc ttgctacttc tatagatcac acaaaacata cttttactct gaattaacgg
     7921 gatggtgact tgcctcaata taatactgac tataacatgc cttctggact tcggaatatc
     7981 actccgtatc ggagatgata aatagcaaat tgagtaaggc caggatgtca aacacgccaa
     8041 tcgagcttaa aggcagtagc ttcaccttat cagtggttca tttgcatgaa gcggaaccag
     8101 aggttattcg tcaggcgtta gaagacaaaa tagcgcaggc tcctgcgttt ttaaaacacg
     8161 cccctgtcgt tattaacgtt agcggtcttg aaagcccggt aaactggccg gaactgcata
     8221 agatcgtgac ctcaaccggc ttacgcatta tcggcgtgag cggctgtaaa gacgccagcc
     8281 tgaaagtaga aatcgatcgg atgggtcttc ctttactgac tgaaggtaaa gagaaagcgg
     8341 ttcggcctgc gcccgttgag ccggcaacgc ccagcgaacc gccgcaaaac gctaatccca
     8401 tcacaaaaac gcgattaatt gatgttccgg ttcgttccgg tcagcgcatt tatgctccac
     8461 aatgtgatct gattgttaca agtcacgtca gcgctggcgc agagcttatc gctgacggca
     8521 atatccatgt ctatggcatg atgagaggtc gcgcgctggc aggggcgagc ggcgatcggg
     8581 aagcgcaaat tttttgtacc catctgacgg cagaactggt ctctatcgca ggtgtttact
     8641 ggctgagtga taaaatcccg gcagaatttt atggcaaagc ggcgcgcctg cgtttagcag
     8701 acaacgcttt gacagttcaa ccgttgaatt gatccctttt taacaaggaa tttttatggc
     8761 acgcattatt gttgttactt cgggtaaagg gggcgttggc aagaccacct ccagcgcggc
     8821 catcgctaca ggtttggccc agaagggaaa gaaaactgtc gtcattgatt ttgatatcgg
     8881 actgcgtaac ctcgatctga ttatggggtg cgaacgtcgt gtcgtttacg attttgtaaa
     8941 cgtcattcag ggcgatgcga cactgaatca ggcgctgatc aaagataagc gtactgaaaa
     9001 tctcttcatt cttccggcgt cgcagacccg ggataaagac gcgctaacgc gcgaaggcgt
     9061 cgctaaggta ctggactcac tgaaagcaat ggactttgag ttcattgttt gcgactcgcc
     9121 ggcgggtatc gaaaccgggg cgctgatggc gctctatttt gccgatgaag cgatcatcac
     9181 gaccaacccg gaagtctctt ctgtccgtga ctcggaccgt attctgggta ttctggcatc
     9241 gaaatctcgt cgcgcagaaa atggcgaaga accgattaaa gaatatctcc tgttgacgcg
     9301 ctacaatcca ggccgcgtca ataaaggcga catgctcagc atggaagatg tactggagat
     9361 tctgcgtatt aaactcgtcg gtgtgatccc ggaagatcaa tccgtactgc gcgcatcgaa
     9421 ccagggcgaa ccggtgattc ttgacgccac tgcggatgcg ggtaaagcct atgcagatac
     9481 cgtagatcgt ctgttgggag aagaacgtcc tttccgcttc attgaagaag agaagaaagg
     9541 tttcctcaaa cgcctgttcg gaggataaat tatggcatta ctggattttt ttctctcgcg
     9601 gaaaaagagt accgctaata ttgcaaaaga gcggttgcaa atcattgtcg cggaacgtcg
     9661 ccgtagcgat gccgaaccgc attatttacc gcagttacgt aaagatattc ttgaggtcat
     9721 ttgtaaatac gtacaaatcg atccggaaat ggttaccgtc cagcttgagc aaaaagatgg
     9781 tgatatctcc atccttgaac ttaacgtaac gctgccggaa gccgaagagt caaaataagc
     9841 tcttttatgg gaaaattcct ggattaaaaa aggcagaaga atctgccttt tttatttttt
     9901 tacattattc cgaatacgga catttatttc actggccgtt ttcccggcaa ttaccgtcgt
     9961 taaagcgaat actcctgcaa cagaagagtt aacttctccg ccatcagttc ggcgcgccag
    10021 ccggaaatca attccggttg cccattttgc ggttttaatt tccagtgcca gttaagcaac
    10081 tgattaatct gccgacgcga tgccagtagc tcgccgctga cgtgatgcga cgcgctcacc
    10141 tccgccacta gcgctttgat ggccttaaac gctttgcgat agcccggcat gtccatcaga
    10201 ttcaacaggg gttccggcaa tgcctcttcc ggtagcgcct gtgctttcgc caccagcgat
    10261 atcaacgtct tgccgtgaaa acgaatctcg ctgccggaaa gccccaggct atccagctca
    10321 ccgagactgc ccggcatata acgcgcgacc gcccacaggt tttcttcacg cacaacaaag
    10381 ttcaccgcca tatcgcgctc acgcgcctta cgtagccgcc agtcagctaa aagttgcaga
    10441 caggctaact ggcgagtacg cagttgccag gcattggtga tatcccgcca tgcttcttcc
    10501 ggcgcctgaa tctcctgacg acgctgctgc atcaatcggc attcatcaag cgcggcaggc
    10561 agccatcctg cggcttcagt ttcaatcatc agctttttgg cgatcggtaa cagataccag
    10621 acatccgccg ccgcgtattc acactgacgt tcgcttaaag gccgggctaa ccagtcggta
    10681 cgagactcgc ttttgtccag cgccacgccc gtatactctt ctaccatcga cgcaaaaccc
    10741 cacgacagcg gacgcccgca aaacgccgcc agaatttgcg tatcaatcag aggttccggc
    10801 agttcgccaa acgcattcag aaatacttcc agatcttcgc tacccgcgtg cagaaatttg
    10861 gtgattcccg tatcgcgcaa caccgctttt aacggcgacc agtcgctgat gccgagcgga
    10921 tcgatcaggg cgacatttgc cccgtcaaat aactggatca atcctaactg cgggtaatag
    10981 gtgcgggtac ggacaaattc cgtatctaaa gcaatagccg gacatgcgcg gacagcctca
    11041 cacaggctcg ccagcgcatc gtccgtttca atcatttggt aattcaaatc gtgttctctt
    11101 tggttcgcgc caaaaaaaac gccggcttaa ccggcgtctc tcgttagctg acttaacgct
    11161 caggctttat tgtctacttt gccacgggct tcgtcacgca gttctcgtcg taaaattttc
    11221 ccaacgttag attttggtaa ttcctcgcga aactcgacct gtttgggcac cttatatccg
    11281 gtcagatggc gacggcagaa ggtgatcaac gcatcgtcag tcaatgccgg atctttctta
    11341 accacaaaaa gcttcaccgc ttcgccgcta ctaccggaag gcacgccaac cgccgcgact
    11401 tcctgcacgc cagaatgctg catcaccaca tcttcaattt cgtttggata aacgttgaaa
    11461 ccagaaacca gaatcatatc tttcttacga tcgacaatcc gcagaaagcc gtcttcatcc
    11521 ataaccgcaa tatcgcccgt atgcagccag ccatctttaa tgatttcatc cgtcgcgtca
    11581 ggacgctgcc agtatcccag cataacctgc gggcctttca cgcaaagctc tccggcctca
    11641 cccggcgcga cttcgttgtc atcgtcatcc accagtttgg cttctgttga cggtactggc
    11701 aggccgatac tgccgctgtg ataatcaata tcatgcgggt tgacgctcac cagcggggcg
    11761 cactcggtca gcccgtagcc ttccagcagg tattgcccgg tcagctttac ccaacgttcc
    11821 gcaacgacgt tttgcaccgg catcccgccg ccggctgaca gatgcagcga agaaaaatcc
    11881 agctgttgaa actctttatt attgagcagg gcgttgaata gcgtattaac gccagtcatc
    11941 gccgtaaatg gatatttcgc cagctccttg accagaccgg ggatatcacg cggattggta
    12001 atcagcaggt tttgcccacc cagctcgata aaaagcagac agttcatggt taaggcaaaa
    12061 atgtgataca gcggcagcgc ggtcactacc agctctttcc ccgggtgcag cagcggccca
    12121 taggtcgctt tcacctgctc cagattcgcc agcatattgc ggtgggtcaa catcgcgcct
    12181 ttcgccacgc ccgtcgtacc gccagtatat tgcaggaaag ccagatcttc agcgacaacc
    12241 tcgggtttga catactgcat acggtagcca tgctgtagcg cgctgcgaaa cgagatcgca
    12301 tctggcaagt ggtattttgg caccagacgc ttgatgtatt tcacgacaaa gttaacaacc
    12361 gtacctttgg cggtagaaag ctggtcgccc atccgcgtca gaataacgtg ctgtaccgac
    12421 gttttctcga ccactttttc cagcgtatgg gcaaagttag aaacaataat gattgccgcc
    12481 gcgccgctat cgttaagctg atgctcaagt tcgcgcggcg tgtaaagcgg gttaacgttc
    12541 accacaatca tgccggcgcg taaaatacca aatagcgcga caggatactg caacaggttt
    12601 ggcatcatca gcgccacacg gtcgcctttt ttgagtccca gcccttgttg taaataagcc
    12661 gcaaatgccc gactacgttc ttctaattta cggaaggtca ttacctcccc catattgacg
    12721 aacgcaggct gatcggcata gcgcgtcgcc gcatgttcaa acagttcaac cagggattga
    12781 taacggtcag ggttgatctc cgccggaaca tcagcaggat aacggttaag ccaaaccttc
    12841 ttcaatgcat cacctctaaa atgagtgttc gtcgtcatca caaccccagt caataaacaa
    12901 gtcgttaaca ttatattaac tcagcgtacc agtttattaa ttacgcaact gaaaggttgc
    12961 gaagcgcgtc actatttatt tttattatgt ctctatgaat gcagaaacag cggaccagcc
    13021 gctgtttctt ttattgataa aacaaagggt tactctgtta ctatcgtctg aacctctgcg
    13081 ggtccagggt tataccatcc ccaaccgcca tatccataag gccaggcgcg tccgccgtaa
    13141 aaccacggat cgatcggctg tggaggcatg acgacctgct gaacaagatg ccagcgttta
    13201 tagccggtag cctgcatcag cataaattta tacggcgtat tgccgatttt accgtcaacc
    13261 gtgccggtta tcgggccgac aacggtaact aactggccac ggaagtccac cgggtccaga
    13321 aaaccgttca catcggcaaa aattctgccg cgcgaggctt cgcccagaac aggacgcgcg
    13381 ccgctgtcga gcggtacggt cgcgatttca agccgggttt ttccctgctg attttgtacc
    13441 gccacaactt tgccgccaaa acgcgcctct tgcccgatat agagctgcgg cgcattcatc
    13501 acccgcacca aatcctgctg cggcgtcgga ctcgaacctt taatggcatc cgggatagtc
    13561 acgcaaccgc tcagcataag cgcaaaagcg cacgccagcg ccccttttat taaccgtttt
    13621 tgaaccgcca tgatgcgact cctttttctc gacctctatt ccaccccaca gcataaagta
    13681 tgggggtaat agtagtgaga gtcattcttt gccgggaagt ttcttccacg ccacttcgtt
    13741 acgcaaataa accggctcgg catgttccac ggcaacggtc tctcctgccg ccagcttttg
    13801 actggcgatg ggcaacatat cttccgctgc cgggagcgac acctccccat catgaagcgt
    13861 caggccgcac tccttcgcca gatcgggcca tgcggaccaa cccgttccta cggtcgccca
    13921 ctcgccggaa agctgtttca accgctcgcc gacccgttcc ggtttcagca ccgcttccgt
    13981 ctcttcgccc tgccagacgc cctgcgcatc acgctggtat tccgcccagt acacttcgcc
    14041 catccgcgcg tcaatcgcgg cgagtacgcg ggtcgcgcca gttttacgcc atgcgccctg
    14101 cgccatcgtg gcaagcgtcg aaacaccgat catcggcaga tttgccccta acgccagccc
    14161 ttgcgcaatc ccaatgccga tacgcacgcc ggtaaagctg cccggaccgc gcccaaacgc
    14221 cagcgcatct atctcattga gcgaggcgcc gctggcggcc agaatctcct gcaccatggg
    14281 caggatacgt tgagtgtgtt ctcgtggaca aagctcaaag tgagcattga tagtaccgtt
    14341 gttccacagg gcgacagaac aggcctctgt ggcggtatcg atagccagaa ttcgcatgag
    14401 gtttcgtgct tagatcaata aaatagcgcg catcttacca tactccgtaa caaattactc
    14461 ggcggatgga atcgcaagaa agcgaacggc acgggcgata tcacgcgtgc gcggcgcagg
    14521 aggcaggctg gcgagaaacg tggcgccata gggccgcatc accagccggt tatcacaaat
    14581 cactaacacc ccgcgatcgt ccgcatcgcg aattagccgc cccactccct gcttcagcgt
    14641 aatcaccgca tcgggcagtt gaacctcatc aaacggatcg ccaccgcgca aacgacagtc
    14701 ttccattcgc gcttttaaca gcgggtcgtc cggggaagta aacggcaatt tgtcgataat
    14761 caccaaagat aacgtatcgc cgcgcacgtc caccccttcc cagaagctgc tggtggcgac
    14821 gagcagcgcg ttgccggcgc taacaaattg ctgtaacagt tggcctttac tggtttcccc
    14881 ttgcaacaat accggcagcg tcatggtggc gcgaaactgc tccgccagat cgcgcatcat
    14941 ggcgtgtgag gtgcacagca taaaacatcg cccgttattg gcttcgataa tcggcctgag
    15001 catagccgcc aactgtcgcg ccgcgccggg ctggttggtt tgcggtaggt tacgcggtac
    15061 gcagagtaac gcctggcgcg tatagtcgaa tgggctgggc aacagcatgg attctgcctg
    15121 ttcaattccc agacgggcgg taaagtggtg gagatcatca tttaccgaca acgtggccga
    15181 ggtaaaaatc cagctaccgg gcttctgttc catcacctct ttgaatttgt ccgccacggt
    15241 gagcggcgtc agcgccagag tgaaatggcg cgaggtgcac tcataccagt agctgtatcc
    15301 cggctgattg atctctttta agcgtttcag ccgtgaacgg tatagcgtgg cgcgttcaaa
    15361 agccgcatcc agcagcgccg aacggcccag cgacagtttc gccacgtcgt aacaaagctc
    15421 cagcgtatca tccagcagta aaaatgcccg ttggatacga gagtcggcta acagttcacg
    15481 caaatttccc cggtagccgg gctcccccag ttgcagacga aaatcctggg cgctctgggc
    15541 aaggcgatcg gcgcattttt gcaactgttg agtgtctttc agttccgtcc ggtaggcgat
    15601 ggtgatgtct tttgctaaat ccagcaactg acggctagag agcgattgtc cgaaatactg
    15661 gctggcgatg tcaggcagtt ggtgggcttc atcgaagatc attacttcag cctgagggat
    15721 aagttcgcca aacccgctct ctttaaccac catatccgca agaaaaaggt ggtggtttac
    15781 aatcaccaca tccgcgtcca tcgccttttt acgcgctttc accacaaagc actctttgta
    15841 aagcggacaa tcgctgccaa ggcagttgtc gttggtactg gtgaccagcg gccaggcctg
    15901 ggaatcctcc gccacgctga cgcaggtgct gatatcgcca tcccgcgtct gatttgacca
    15961 ggagcgcagc aatatcacgt cgcttaacgt ttgtaccggt aaatcgccgc ccgccagcgc
    16021 ttgttgttcc agacgctcca ggcagaggta gtttgaacgt cctttcaaca gggccgtctt
    16081 accggtaaac gccaacgctt ttgctaccgt cggcagatcg cggctgtaga gttgatcctg
    16141 caacgctttc gacccggtcg aaataatgac ttttttcccg gcgcgcaacg ccggagcgag
    16201 gtaagcatag gtcttcccgg ttccggtgcc ggcttcaaca accaaaggct gcgcattttc
    16261 aatcgcttgt gtcacggcaa ccgccatttg tcgctgtggt tcgcgcggtt taaagccggt
    16321 tatcgctttg gccagttggc catctgctgc aaaatcgtcc gtcacactgc cccctgttaa
    16381 tttgcacagg ggattatgtc agggtagaaa ggcttacgcc agttacagag gtgacggcgg
    16441 cgccacattg tggcagtctt gagccattca aatggaaagc aaatgaggaa taagtgatgt
    16501 ctatcgtgcg tattgatgcc gaagatcgtt ggtcagacgt ggtgatctac aataatacgc
    16561 tgtggtatat cggcgtgccg gaaaacctgg acgccgatgc ttttgagcaa acggcgaata
    16621 ctctggcgca aattgatgcg gtgctggaaa aacagggctc cagtaagtca cgtattctgg
    16681 atgccactat tttcctgagc gataaagcgg attttgccgc catgaataag gcgtgggatg
    16741 cgtgggtcgt cgcaggccat gcgccggtac gctgtaccgt acaggccggg ttgatgaacc
    16801 cgaaatataa agttgagatt aagattgtcg cggcggtata agccggttat tcgtcttcat
    16861 cctcaaaacg cgccactatc cgttcgccgg tatggttggc gcgaagttcg cctgccacct
    16921 gggcaatcgc ttctccgcta ctcatacctt gcgacatcaa ttcctggata cgttctacgg
    16981 ctttttgctg ttgttcatga ctgagtgaag gtaaacctgc aaacatgatt aactcctgct
    17041 aaattgttag cgctaattat ttcacgctac ccggcggtaa gccagtagtg ttgtaacgag
    17101 tcaggaatga tgaagacgtt atctcccact gttatcacct taccctggcg tccggacgcc
    17161 gctgaacact attttgcgcc cgtaaaccat ttgccctggg cgatgctgct gcattcaggt
    17221 gatgctattc atccctataa ccgttttgat attctggtcg ccgatcctgt caccacactg
    17281 accacgcgcg cccaggaaac cacggtatgt actgcgcgca cgactaccgt cactctcgac
    17341 gatccgttac acgttttgca gactcaactg gaggcgctgc cttttcatcc tcagcctgac
    17401 cctgacttac cctttcaggg cggcgcgctg ggtctgtttg gttatgattt agggcggcgt
    17461 ttcgaaattc tgcccgatac tgccgcgcgc gatatcgctt tacccgatat ggcgattggc
    17521 ctttacgact gggcgctgat tgtcgatcac cataaacagg tagtgtcgct gataagctat
    17581 cacgatgcag acgcccgata tcgctggctc accggccagc gcgcgccgac ccgaacgccc
    17641 ttcaggctta cctcggcctg gcaatccaat atgacgcgtt gcgagtatgg cgagaagttt
    17701 cgtcaggtgc aggcctggct gcacagcggg gactgctatc aggtcaatct ttcccagcgt
    17761 tttcaggcga gctacgaggg tgatgaatgg caggctttcg aacgccttaa ccgcgcaaat
    17821 cgcgccccgt tcagcgcctt tcttcgttta catgacggcg ccatattgag cctttctccc
    17881 gagcgtttta tccaactgga gaacggtcat attcagacgc gcccgatcaa aggtacgctt
    17941 ccacggctta acgatccgca ggcggatcgt cagcaggcgc agaaactggc taattcaatg
    18001 aaagatcgcg ctgaaaattt gatgattgtc gatttgatgc gtaacgacat tggccgggtc
    18061 gccgtaccag gttcggtgaa agtgccggaa ctgttcgtcg tcgaaccatt tcctgccgtt
    18121 caccatctgg ttagcaccat tactgcccgt ttaccagact cgcttcatgc caccgatctg
    18181 ctgcgcgcgg ctttccccgg cggctccatt accggcgcgc ctaaagtgcg ggcaatggaa
    18241 attatcgacg aactggagcc gcagcgacgc aacgcctggt gcggtagcat cggttatctg
    18301 agtttctgcg gcaagatgga taccagtatt actatccgca ccgtcacggc aacgcagggc
    18361 caactctatt gctcagccgg cggcggtatc gtggccgata gcaacgaaga agcggaatat
    18421 caggaaactt ttgataaagt taatcgtatc ctgcacccac tggagaacta atacgtggat
    18481 accagccgtc tgacgctcga tcatttctta tcgcgctttc agcttttgcg cccgcagatg
    18541 actcatgaaa cgttaaatca acgtcaggcc gccgtactga tccctgtggt tcgccgcccc
    18601 cagccggggc tgctgttgac ccagcgggct attcatttgc gcaaacacgc cggacaggtc
    18661 gcctttcccg gcggggccgt ggacagtacc gatgcttcgc ttatcgccgc agcgcttcgc
    18721 gaagcgcagg aggaagtcgc catcccgccg caagccgtgg aagtgattgg cgttttaccg
    18781 ccggtagaca gcgtgaccgg ttttcaggtc accccggtgg tcggcattat tccgccaaat
    18841 ctcccctggc gcgccagtga agacgaagtg tctgcggtgt ttgaaatgcc gctggcgcaa
    18901 gcgttgcaac tgggtcgata tcatccgctt gatgtttacc gtcgcggcaa ttcgcaccgc
    18961 gtatggctct cctggtatga gcattatttc gtctggggca tgaccgcaaa cattcttcgt
    19021 gagctggcgc tgcaaatcgg cgtaaagccc tgactgtaca caacgccatt cacgttgcct
    19081 caaggcggta acaatcgcct cccccaaaga ggcagcctga agggcaacgt gtatatactt
    19141 aactttacgc gcgcaagaca cgacttgaga ttactgtcgc aatattagta aaaacgcggt
    19201 tattcattag tttaattcat gtgaatagtt aagctgatgc cagcgttccc tcttacacta
    19261 tgcgcagtta taacatcgta accggaagcc ccggttgccc tgtcaggagt attatcgtga
    19321 ttagcctatt cgacatgttt aaggtaggga ttggtccctc ctcttcccac actgttggcc
    19381 cgatgaaggc cggtaaacag ttcgtcgatg acctagtcga aaaaggatta ctggataacg
    19441 ttacccgcgt cgctgtcgat gtctacggct cgctgtcgct gacggggaaa ggtcaccata
    19501 ccgatatcgc cattattatg ggtctggcgg gtaatgaacc cgctaccgtg gatattgata
    19561 gtatccccgg ttttattcgc gacgtcgaaa cgcgcgagcg tctgttactg gcccagggac
    19621 gtcacgaagt cgacttcccg aaagatgacg gaatgcgttt tcacaacggc aatttgccgc
    19681 tgcatgaaaa cgggatgcag atccacgcct ggcatgacga cacggtcatt tatagcaaga
    19741 cgtactattc catcggcggc ggctttatcg ttgatgaagc gcatttcggc caggaagcga
    19801 cgaatgaggt tactgtacct tatccgttta aatcggcgaa agaaatgctg gagtattgca
    19861 acagcaccgg cctttcactc tccggcatgg tgatgcaaaa cgaactggcg ctgcatagca
    19921 agaaagagat tgaagagtat ttcggtcacg tctggcaaac catgcaggct tgtattgatc
    19981 gcggtatgaa taccgaaggc gttctgccgg ggccgctgcg cgtaccgcgt cgcgcctctg
    20041 cgctgcgtcg tatgctggtt tccagcgata agctttccag cgatccgatg aacgtcattg
    20101 actgggtgaa catgtttgct ctggcggtga acgaagagaa cgccgcaggc ggtcgcgtcg
    20161 tgacggcgcc aaccaacggc gcgtgcggca tcgttcctgc ggtactggct tactacgacc
    20221 attttattga gtctgtcagc ccggatattt acacccgcta cttcctggcg gcaggcgcta
    20281 ttggcgcgct gtataagatg aacgcgtcta tttccggcgc ggaagtcggc tgtcagggcg
    20341 aagtcggggt cgcctgttcg atggcggcgg caggccttgc tgaactgttg ggcgccagcc
    20401 cggaacaggt ttgcgttgcc gctgaaatcg gcatggagca taacctgggg ctgacctgcg
    20461 acccggttgc cggtcaggtg caggtgccgt gtatcgagcg taacgccatt gcttcggtta
    20521 aagcgatcaa cgctgcgcgt atggccatgc gtcgaaccag cgcgccgcgc gtctcgctgg
    20581 ataaagtcat cgaaacgatg tacgagaccg gaaaagacat gaacgccaaa taccgcgaaa
    20641 cgtcgcgcgg cgggttggct attaaagtcc agtgtgatta aacgccattt cccctccctt
    20701 cgcccatctg ctacggatgg gcgaaatttt tatctcttcc tcgtcgactc cacgtttccc
    20761 cactacactt gctgtgtcgc ggttggcttt tgtcgccaac gcttattggg cggcccgcat
    20821 gcaaacagca caacggatca tcaatcatta tcgccgtaat cgtttcattg tttgcacgat
    20881 ttgtgcactg gtcacgctca ttcttacgct gaacatccga tttatttcgg agcggaactt
    20941 aaatcaccat cgcacggttg cattcgcgaa tcatgccgtt gatgcgctgg ataatgtgct
    21001 gcatcctctc ctggtcggac gaaacatact gctaccctta cttgagcttc cgtgcgcgac
    21061 cgcgcatctg ccgttgcgta agcaagccgc ccgcctgcaa accattcgtt ctatcgggct
    21121 ggtaaaagag ggaattctct actgctcaag catttttggc gcccgtaata ctcccatacg
    21181 ccagcttcag cccgatcttc ccgcagctgg cgatctgctg ctactttcca cggaccaatc
    21241 gttactcaag ggaagcccga tcctcattca gtggtatccc gcctctgccg atggacagga
    21301 tggcgtgatg gaaattgtga atattgactt gctggcgact atgctacttg agccgcagca
    21361 gccgcaaatt accagcgcca gcctgacggt cggcaaacgg cacctgttat atggtcgggg
    21421 cgtggtcgat actcttccgg aattaaaaaa agatgaagag cgttaccagc tttcatcgcg
    21481 gcatttccct tttactatca gcgtcagcgg gccgtcggca ggcgtactgg cgttcaaaca
    21541 tctcccgacg cagttaccgc tggccgtatt gcttagcctg ttgatcggtt atatcgcctg
    21601 gctggcaacc gccagcagaa tgagcttttc ctgggaaatt aatctggccc ttgccgaacg
    21661 ggagtttgag ctattttgtc agccgttgct taatgcccgc acgcagcagt gtaccggcgt
    21721 tgagatcctg ttacgctgga ataacccgcg ccagggctgg atctcaccgg atgtttttat
    21781 tcctatcacc gaggagcata acctgatagc gccgctgacc cgctatgtga ttgcggaaac
    21841 cattcggcag cggcactact tccccatcaa ccatcagttt catatcggca tcaatgtggc
    21901 ggcaagccat ttccgacacg gcgtgcttct caaggatctt aatcagtact ggtttagtgc
    21961 ggaacctgtt cagcaactgg tgctggagct cacggaacgc gacgcgttgc ttgacgttga
    22021 ttaccgcctg atgcgcgagc tgcatcgtaa aggcgtgaag ttagccatcg atgattttgg
    22081 cacaggaaac agctcgctct cctggctgga aaaactgcgt ccggatattt tgaaaatcga
    22141 taaattcttc accgccgtca tcggtaccga tgcggtcaat tcaacggtga ccgatattat
    22201 tatcgcgctg gggcaaagac tgaatattga actggttgcg gaaggggtcg aaaaccagac
    22261 gcaggcacag catttgcgcc agcatggcgt gcaaatgtta cagggctatc tctatgcgaa
    22321 gccgatgccc attagcgaat ttccacagtg gctggcgggc agcgcgccgc cgcccgcccg
    22381 gcataacgga cagattatgt ccgcgatgcc gcatctatag acttgattcc tgcgtgtgac
    22441 gttattcctc ttcgtcgtgg gcaggctgtt ctttaacaat tcgaaccaga tcgacacggt
    22501 agtcgttggc ctcgacaatg gtgatccgca ggggcggaac atcaatgaca tcgcctacac
    22561 gaggaatatg gccattagcg gcgatcacta accccgcgac cgtcgcaata tcaccctctt
    22621 cgttcaccag atggtcaact tccagcgcct gctgtaacgc atgaagatcg gtgccgccct
    22681 tcactatcca gccctcggca tcggcaacga tttccggcgt ttcatcggca tccgggaact
    22741 caccggcaat cgcttccagc acatccagcg gcgtaaccag cccctgcacc acgccgaact
    22801 cgttagtgac gataacgaaa ctgccgcgcg cgcgacgcaa aacgcctaac agattgatag
    22861 gatcaagcgt ttccggcacc actatcgccg gggaagaggc ggcgatagcc gcaacgtccg
    22921 cgccctcttc cagcgccacc agcaactctt tcgcccgaac gataccgata atttcatcca
    22981 gctcgccccg acataccggg aacaggctat gcggagaaga gagtaactgc tgacggattt
    23041 cagctacgct gagattcgca tccacccaac taatttcgcc tcgcggcgtc ataatgccgc
    23101 gcagggagcg cgacgccaga gtcagtacgc cgttaatcat gtagcgttct tcttcggcga
    23161 aggcgccttc cgacaccgat atcgcggccg ggctatccgt ctcatgttgc atactcgcct
    23221 gacgtttacc gcccatcaga cgcaggatag cgtccgcagt acgcgcgcgc agcggcaacg
    23281 tggactgatg acgaataaag ttgcggcgcg caatctggtt aaacacctcg ataacgatcg
    23341 agaaaccaat tgccgcgtac aggtagcctt tcggaatatg gaaaccaaat ccttccgcca
    23401 ccaggctcaa gccgatcatc agcaggaaac tcagacagag caccaccacc gtcggatgct
    23461 ggttgacaaa acgggtcagc ggttttgacg ccagtagcat caccgccatc gcaatcacca
    23521 ccgccgccat cataaccggc agatggttta ccatacctac cgccgtaatc acggcgtcca
    23581 gcgagaagac cgcatccagg atgacaatct gcgtgactac cacccagaag ctcgcatagc
    23641 ctttaccgtg tccggtgtca tgctcgcggt tttccagacg ttcatgcagc tcggtggtcg
    23701 ctttaaacag caggaatata ccgcccagca gcataattaa atcgcggccg gagaaggtaa
    23761 aatcccagac agtaaagagc gactttgtta aggtcaccag ccacgaaata atggacagca
    23821 gcgccagacg cataatcagc gccagcgaga gcccgataag acgcgctttg tcacgctgct
    23881 ttggcggcaa tttatcggcg aggatcgcga taaagaccag gttatcgata cctaggacaa
    23941 tttccaggac gacgagcgtg agtaaaccca cccaaattga gggatccatt aataattcca
    24001 tgacaagctc ctgcttaagg aatgactaaa cggcgcccac aacatctcaa aggatgcagg
    24061 cggtaacgca ataaacaaag taaggctatg gcaagatatg ccagattgac aggcgcaaaa
    24121 cggccaaaga gtgaaatgac gtcggtgacg atccatacaa cgggctgctg ccctataccc
    24181 cattctaatt aaacggaagc taaacataac agagacaact ggtttttggc aaagatttac
    24241 cttcctttgc aaagagatgt aaccaggata ttttacactt cgaaatttct cattatcgaa
    24301 aacaaaatta cagatctcca tcacacaaaa tatttttttc gatatcta
//
LOCUS       DAJVSD010000043        24336 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.043, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000043 DAJVSD010000000
VERSION     DAJVSD010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 24336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24336
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.043"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..2249
                     /gene="phsA"
                     /locus_tag="OQP62_001438"
     CDS             <1..2249
                     /gene="phsA"
                     /locus_tag="OQP62_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="thiosulfate reductase PhsA"
                     /protein_id="HCS1721026.1"
                     /translation="GVGIGCSACALGAFPPGALARNPIAGINGKTTLTPSLCEMCSFR
                     CPIQAQVVNNKTVFIQGNPSAPQQGTRICARGGSGVSLVNDPQRIVKPMKRTGPRGDG
                     EWQVISWQQAYQEIAAKMNAIKAQHGPESVAFSSKSGSLSSHLFHLATAFGSPNTFTH
                     ASTCPAGKAIAAKVMMGGDLAMDIANTRYLVSFGHNLYEGIEVADTHELMTAQEKGAK
                     MVSFDPRLSIFSSKADEWHAIRPGGDLAVLLAMCHVMIDEQLYDASFVERYTSGFEQL
                     AQAVKETTSEWAAAQADVPADVIVRVTRELAACAPHAIVSPGHRATFSQEEIDMRRMI
                     FTLNVLLGNIEREGGLYQKKNASVYNKLAGEKVAPTLAKLNIKNMPKPTAQRIDLVAP
                     QFKYIAAGGGVVQSIIDAALTQKPYPIKAWIMSRHNPFQTVTCRSDLVKTVEQLDLVV
                     SCDVYLSESAAYADYLLPECTYLERDEEVSDMSGLHPAYALRQQVVEPIGEARPSWQI
                     WKELGEQLGLGQYYPWQDMQTRQLYQLNGDHALAKELRQKGYLEWGVPLLLREPESVR
                     QFTARYPGAIATDSDNTYGEQLRFKSPSGKIELYSATLEELLPGYGVPRVRDFALKKE
                     NELYFIQGKVAVHTNGATQYVPLLSELMWDNAVWVHPQTAQEKGIKTGDEIWLENATG
                     KEKGKALVTPGIRPDTLFVYMGFGAKAGAKTAATTHGIHSGNLLPHVTSPVSGTVVHT
                     AGVTLSRA"
     gene            2264..2842
                     /gene="phsB"
                     /locus_tag="OQP62_001439"
     CDS             2264..2842
                     /gene="phsB"
                     /locus_tag="OQP62_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate reductase electron transport protein
                     PhsB"
                     /protein_id="HCS1721027.1"
                     /translation="MNHLTNQYVMLHDEKRCIGCQACTVACKVLNDVPEGFSRVQVQI
                     RAPEQASNALTHFQFVRVSCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYC
                     VAACPFHVRYLNPQTGVADKCNFCADTRLAAGQSPACVSVCPTDALKFGRLDESEIQR
                     WVGQKEVYRQQEARSGAVSLYRRKEVHQEGKA"
     gene            2839..3603
                     /locus_tag="OQP62_001440"
     CDS             2839..3603
                     /locus_tag="OQP62_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate reductase cytochrome B subunit"
                     /protein_id="HCS1721028.1"
                     /translation="MNTIWGAELHYAPDYWPLWLIYAGVVVLLMLVGLVIHALLRRML
                     APKTAGGEEHRDYLYSLAIRRWHWGNALLFVLLLLSGLFGHFSLGPVALMVQVHTWCG
                     FALLAFWVGFVLINLTTGNGRHYRVNFSGLVTRCIRQTRFYLFGIMKGEAHPFAATEQ
                     NKFNPLQQLAYLAIMYALVPLLIITGLLCLYPQVAGLGPVMLVLHMALAIIGLLFICA
                     HLYLCTLGDTPGQIFRSMVDGYHRHRTAPRGDKSAV"
     gene            3727..4899
                     /gene="dacD"
                     /locus_tag="OQP62_001441"
                     /pseudo
     CDS             3727..4899
                     /gene="dacD"
                     /locus_tag="OQP62_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461007.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase DacD"
     gene            5050..5517
                     /gene="sbmC"
                     /locus_tag="OQP62_001442"
     CDS             5050..5517
                     /gene="sbmC"
                     /locus_tag="OQP62_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor SbmC"
                     /protein_id="HCS1721029.1"
                     /translation="MDYEIRQEQKRKIAGFHMVGPWEHTVKQGFEQLMTWVDRQRIVP
                     VEWIAVYYDNPDVVPAEKLRCDTVVSVAENFILPDNSEGVIVTAIEGGEYATAVARVE
                     DRDFAKPWERFFDVLEQDSAYQIASAPCFETYLNNGMEDGYWDIEMYIPVQRK"
     gene            5636..6694
                     /locus_tag="OQP62_001443"
     CDS             5636..6694
                     /locus_tag="OQP62_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HCS1721030.1"
                     /translation="MRADKSLSPFEIRLYRHYRIVHGIRIALAFILTFLLVRLFSIPE
                     GTWPLITLVVIMGPISFWGNVVPRAFERIGGTILGAALGLVALRLELFSLPLMLVWCA
                     IAMFLCGWLALGKKPYQALLIGITLAVVVGAPAGDMNTALWRGGDVILGALLAMLFTG
                     IWPQRAFLHWRIQLAHCVTAYNRVYQAALSPNLLERPRLDKYLQRLLNDVVKMRGLIT
                     PASKETRIQKSIFEAIQTINRNLVCMLELQINAHWATRASHFVMLNTHTLRETQQMTQ
                     QTLLTIAHALFEGNPQPVLANTGKLNDIAAELRQLMNEQQGDAVAETPIHGYVWLSME
                     TARQLELLSHLICRALRK"
     gene            6939..7274
                     /locus_tag="OQP62_001444"
     CDS             6939..7274
                     /locus_tag="OQP62_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF496 family protein"
                     /protein_id="HCS1721031.1"
                     /translation="METTKPSFQDVLEFVRLFRRKNKLQREIQDIEKKIRDNQKRVLL
                     LDNLSDYIKPGMSVEAIQGIIASMKSDYEDRVDDYIIKNAEISKERRDISKKLKAMGE
                     MKHADVKAE"
     gene            complement(7308..8174)
                     /gene="pduX"
                     /locus_tag="OQP62_001445"
     CDS             complement(7308..8174)
                     /gene="pduX"
                     /locus_tag="OQP62_001445"
                     /EC_number="2.7.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015632997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine kinase PduX"
                     /protein_id="HCS1721032.1"
                     /translation="MAVAQCPASCGELIQGWILGSEKLVSCPVDWYSTVAVTAAPPLV
                     NERPLSRAMVERVLAHWQYPAHWSNEIRVDVRSSIPVAKGMASSTADIAATAVATAHH
                     LGHSLDETTLAQLCVSIEPTDSTVFHQLTLFDHNNAATQIACEPPPPIDLLVLESPVT
                     LRTQDYHRLPRQQKLIASSPTLQQAWNLVQEACITQNPLRLGEAATLSAIASQTLLPK
                     PGFTALLSLVEECDLYGLNVAHSGSVVGLMLDRKRHDIARLKGKLAEKKLTRHWPKQH
                     LLKMVTGGVKLQ"
     gene            complement(8268..9482)
                     /gene="pduW"
                     /locus_tag="OQP62_001446"
     CDS             complement(8268..9482)
                     /gene="pduW"
                     /locus_tag="OQP62_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization propionate kinase PduW"
                     /protein_id="HCS1721033.1"
                     /translation="MSYKIMAINAGSSSLKFQLLEMPQGDMLCQGLIERIGMADAQVT
                     IKTHSQKWQETVPVADHRDAVTLLLEKLLGYQIINSLRDIDGVGHRVAHGGEFFKDST
                     LVTDETLAQIERLAELAPLHNPVNALGIHVFRQLLPDAPSVAVFDTAFHQTLDEPAYI
                     YPLPWHYYAELGIRRYGFHGTSHKYVSGVLAEKLGVPLSALRVICCHLGNGSSVCAIK
                     NGRSVNTSMGFTPQSGVMMGTRSGDIDPSILPWIAQRECKTPQQLNQLLNNESGLLGV
                     SGVSSDYRDVEQAANTGNRQAKLALTLFAERIRATIGGYIMQMGGLDALVFTGGIGEN
                     SARARSAVCHNLQFLGLAVDEEKNQRNATFIQTENALVKVAVINTNEELMIAQDVMRI
                     ALPATEGLCVPA"
     gene            complement(9467..9919)
                     /gene="pduV"
                     /locus_tag="OQP62_001447"
     CDS             complement(9467..9919)
                     /gene="pduV"
                     /locus_tag="OQP62_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization protein PduV"
                     /protein_id="HCS1721034.1"
                     /translation="MKRLMFIGPSQCGKTSLTQSLRGEALHYKKTQAIEWSPMAIDTP
                     GEYLENRCLYSALLTSACEADVIALVLNADAQWSPFSPGFTVPMNRPTIGLVTKADLA
                     DPQRISLVAQWLTQAGARQIFITSALNNSGLDAVLDFLNSKEPLCLTK"
     gene            complement(9924..10274)
                     /gene="pduU"
                     /locus_tag="OQP62_001448"
     CDS             complement(9924..10274)
                     /gene="pduU"
                     /locus_tag="OQP62_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduU"
                     /protein_id="HCS1721035.1"
                     /translation="MERQPTTDRMIQEYVPGKQVTLAHLIANPGKDLFKKLGLQDAVS
                     AIGILTITPSEASIIACDIATKSGAVEIGFLDRFTGAVVLTGDVSAVEYALKQVTRTL
                     GEMMQFTTCSITRT"
     gene            complement(10274..10828)
                     /gene="pduT"
                     /locus_tag="OQP62_001449"
     CDS             complement(10274..10828)
                     /gene="pduT"
                     /locus_tag="OQP62_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduT"
                     /protein_id="HCS1721036.1"
                     /translation="MSQAIGILELTSIAKGMELGDAMLKSANVDLLVSKTICPSKFLL
                     MLGGDIGAIQQAIETGTSQAGEMLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVET
                     WSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVNNAVTVASESAGE
                     KGLLVYRSVIPRSHEAMWRQMVEG"
     gene            complement(10831..12159)
                     /gene="pduS"
                     /locus_tag="OQP62_001450"
     CDS             complement(10831..12159)
                     /gene="pduS"
                     /locus_tag="OQP62_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000059462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin reductase PduS"
                     /protein_id="HCS1721037.1"
                     /translation="MSLSADEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAE
                     CEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAIDALSPLLPAGI
                     RLHILPDVYPAGDEVLTIWMATGRRVAPAALPASVGVVVNNVQTVLNIARAVEQQFPV
                     TRRTLTVNGAVARPLTVTVPVGMSLHEVLALAGGATVDNPGFINGGPMMGGLITSLDN
                     PVTKTTGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSP
                     HLLVRAVNFHQAATPQLLLSALTCSECNVCESVACPVGISPMRINRMLKRELRAQNQR
                     YEGPLNPADEMAKYRLVPVKRLIAKLGLSPWYQEAPLVEEEPSVEKVTLQLRQHIGAS
                     AVPTVAVGERVTRGQCVADVPPGALGASIHASIDGIVSAISEQAITVVRG"
     gene            complement(12183..13295)
                     /gene="pduQ"
                     /locus_tag="OQP62_001451"
     CDS             complement(12183..13295)
                     /gene="pduQ"
                     /locus_tag="OQP62_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-propanol dehydrogenase PduQ"
                     /protein_id="HCS1721038.1"
                     /translation="MNTFSLQTRLYSGQGSLAVLKRFTNKHIWIICDGFLARSPLLDT
                     LCNALPADNRISVFSEITPDPTIHTVVQGIAQMQALQPQVVIGFGGGSAMDAAKAIVW
                     FSQQSGINIETCVAIPTTSGTGSEVTSACVISDPDKGIKYPLFNNALYPDMAILDPEL
                     VVSVPPQITANTGMDVLTHALEAWVSPHASDFTDALAEKAAKLVFQYLPTAVEKGDCV
                     ATRGKMHNASTLAGMAFSQAGLGLNHAIAHQLGGQFHLPHGLANALLLTTVIRFNAGV
                     PRAAKRYARLAKACGFCPAEANDVTAINALIQQIELLKQRCALPSLAVALKEGRSDFS
                     ARIPAMVQAALADVTLRTNPRPASAEEIRELLEELL"
     gene            complement(13307..14701)
                     /gene="pduP"
                     /locus_tag="OQP62_001452"
     CDS             complement(13307..14701)
                     /gene="pduP"
                     /locus_tag="OQP62_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating propionaldehyde dehydrogenase
                     PduP"
                     /protein_id="HCS1721039.1"
                     /translation="MNTSELETLIRTILSEQLTTPAQTPAQPQGKGIFQSVSEAIDAA
                     HQAFLRYQQCPLKTRSAIISAMRQELTPLLAALAEESANETGMGNKEDKFLKNKAALD
                     NTPGVEDLTTTALTGDGGMVLFEYSPFGVIGSVAPSTNPTETIINNSISMLAAGNSIY
                     FSPHPGAKKVSLKLISLIEEIAFRCCGIRNLVVTVAEPTFEATQQMMAHPRIAVLAIT
                     GGPGIVAMGMKSGKKVIGAGAGNPPCIVDETADLVKAAEDIINGASFDYNLPCIAEKS
                     LIVVESVAERLVQQMQTFGALLLSPADTDKLRAVCLPEGQANKKLVGKSPSAMLEAAG
                     IAVPAKAPRLLIALVNADDPWVTREQLMPMLPVVKVNDFDSALALALKVEEGLHHTAI
                     MHSQNVSRLNLAARTLQTSIFVKNGPSYAGIGVGGEGFTTFTIATPTGEGTTSARTFA
                     RSRRCVLTNGFSIR"
     gene            complement(14698..15708)
                     /gene="pduO"
                     /locus_tag="OQP62_001453"
     CDS             complement(14698..15708)
                     /gene="pduO"
                     /locus_tag="OQP62_001453"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-domain cob(I)yrinic acid a,c-diamide
                     adenosyltransferase PduO"
                     /protein_id="HCS1721040.1"
                     /translation="MAIYTRTGDAGTTSLFTGQRVSKTHPRVEAYGTLDELNAALSLC
                     ACAAADENHRTLLEAIQQQLFWFSAELASDSEQPSPKQRYISSEEISALEAAIDRAMA
                     RVEPLHSFILPGRCEAASRLHFARTLARRAERRLVELATEVNVRQVLMRYINRLSDCL
                     YALARAEDSDAHQANIIREVSKRYLAASQPTRSKETTPVALSFHDLHQLTRAAVERAQ
                     QLQVPVVVSIVDAHGTETVTWRMPDALLVSSELAPKKAWTAVAMKTATHELSDVVQPG
                     AALYGLESHLQGKVVTFGGGYALWRDGILIGGLGISGGSVEQDMDIAQTAIAAINVGT
                     HQ"
     gene            complement(15718..15992)
                     /gene="pduN"
                     /locus_tag="OQP62_001454"
                     /pseudo
     CDS             complement(15718..15992)
                     /gene="pduN"
                     /locus_tag="OQP62_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228577.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduN"
     gene            complement(15996..16487)
                     /gene="pduM"
                     /locus_tag="OQP62_001455"
     CDS             complement(15996..16487)
                     /gene="pduM"
                     /locus_tag="OQP62_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduM"
                     /protein_id="HCS1721041.1"
                     /translation="MNGETLQRIVEEIVSRLQRRALSTATLSVAQLRDADCPALFCQH
                     ASLRILLVDLPLLGQLADAETDDAAARKIHDALAFGIRVQLSLHSQLLPVIPVKKLAR
                     LPLVFTDEHGLPLVLHAGSVLGYRDVALLSRGRVVVHRKCIVTAMARDAANARNIQLI
                     KQE"
     gene            complement(16484..17116)
                     /locus_tag="OQP62_001456"
     CDS             complement(16484..17116)
                     /locus_tag="OQP62_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate propanoyltransferase"
                     /protein_id="HCS1721042.1"
                     /translation="MDKELLQSTVRKVLDEMRQRPIPLGVSNRHIHLSAQDYERLFPG
                     HPISEKKALLQPGQYATEQTVTLVGPKGQLKNVRLLGPLRSVSQVEISRTDARTLGIA
                     APLRMSGNLKGTPGIRLVSPFGELELPSGVIVAQRHIHMSPLDALILKVSHGDRVSVA
                     IEGDERGLIFNNVAIRVSPDMRLEMHIDTDEANAAGADNPQAFARLVGPR"
     gene            complement(17116..17598)
                     /gene="pduK"
                     /locus_tag="OQP62_001457"
     CDS             complement(17116..17598)
                     /gene="pduK"
                     /locus_tag="OQP62_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460991.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduK"
                     /protein_id="HCS1721043.1"
                     /translation="MANKEHRVKQSLGLLEVCGLALAISCADIMAKSASITLLALEKT
                     NGSGWMVIKIAGDVASVQAAITTGAQFAEQRNGLVAHKVIARPGEGILLAETPSPSVI
                     EPEPEASEIADVVSEAPAEEAPQESELVSCNLCLDPKCPRQKGEPRTLCIHSGKRGEA
                     "
     gene            complement(17602..17877)
                     /gene="pduJ"
                     /locus_tag="OQP62_001458"
     CDS             complement(17602..17877)
                     /gene="pduJ"
                     /locus_tag="OQP62_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduJ"
                     /protein_id="HCS1721044.1"
                     /translation="MNNALGLVETKGLVGAIEAADAMVKSANVQLVGYEKIGSGLVTV
                     MVRGDVGAVKAAVDAGSAAASVVGEVKSCHVIPRPHSDVEAILPKSA"
     gene            complement(17897..18247)
                     /gene="pduH"
                     /locus_tag="OQP62_001459"
     CDS             complement(17897..18247)
                     /gene="pduH"
                     /locus_tag="OQP62_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol dehydratase reactivase beta subunit
                     PduH"
                     /protein_id="HCS1721045.1"
                     /translation="MDSNHSAPAIVITVINDCASLWHEVLLGIEEEGIPFLLQHHPAG
                     DVVDSAWQAARSSPLLVGIACDRHSLVVHYKNLPASAPLFTLMHHQDSQAQRNTGNNA
                     ARLVKGIPFRDLNS"
     gene            complement(18237..20069)
                     /gene="pduG"
                     /locus_tag="OQP62_001460"
     CDS             complement(18237..20069)
                     /gene="pduG"
                     /locus_tag="OQP62_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol dehydratase reactivase alpha subunit
                     PduG"
                     /protein_id="HCS1721046.1"
                     /translation="MRYIAGIDIGNSSTEVALARQDETGALTITHSALAENTGIKGTL
                     RNVFGIQEALALVAKRAGINVSDISLIRINEATPVIGDVAMETITETIITESTMIGHN
                     PKTPGGAGLGVGITITPEELLTRPADSSYILVVSSAFDFADIANVINASMRAGYQITG
                     VILQRDDGVLVSNRLEKSLPIVDEVLYIDCIPLGMLAAIEVAVPGKVIETLSNPYGIA
                     TVFNLNADETKNIVPMARALIGNRSAVVVKTPSGDVKARAIPAGNLELQAQGRTVRVD
                     VAAGAEAIMKAVDGYGKLDNVNGEAGTNIGGMLEHVRQTMAELTNKPSSEIFIQDLLA
                     VDTSVPVSVTGGLAGEFSLEQAVGIASMVKSDRLQMAMIAREIEQKLNIDVQIGGAEA
                     EAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGEIIATHLAGAGDMVTMIIAREL
                     GLEDRYLAEEIKKYPLAKVESLFHLRHEDGSVQFFPTPLPPAVFARVCVVKPDELVPL
                     PGDLALEKVRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQ
                     LVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSWHKEFAYGQ"
     gene            complement(20276..20797)
                     /gene="pduE"
                     /locus_tag="OQP62_001461"
     CDS             complement(20276..20797)
                     /gene="pduE"
                     /locus_tag="OQP62_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol dehydratase small subunit PduE"
                     /protein_id="HCS1721047.1"
                     /translation="MNTDAIESMVRDVLSRMNSLQGDAPAAAPAAGGTSRSAKVSDYP
                     LANKHPEWVKTATNKTLDDFTLENVLSNKVTAQDMRITPKTLRLQASIAKDAGRDRLA
                     MNFERAAELTAVPDDRILEIYNALRPYRSTKEELLAIADDLENRYQAKICAAFVREAA
                     GLYVERKKLKGDD"
     gene            complement(20812..21486)
                     /gene="pduD"
                     /locus_tag="OQP62_001462"
     CDS             complement(20812..21486)
                     /gene="pduD"
                     /locus_tag="OQP62_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol dehydratase medium subunit PduD"
                     /protein_id="HCS1721048.1"
                     /translation="MEINEKLLRQIIEDVLRDMKGSDKPVSFNTPAASTAPQTAAPAG
                     DGFLTEVGEARQGTQQDEVIIAVGPAFGLAQTVNIVGLPHKSILREVIAGIEEEGIRA
                     RVIRCFKSSDVAFVAVEGNRLSGSGISIGIQSKDTTVIHQQGLPPLSNLELFPQAPLL
                     TLETYRQIGKNAARYAKRESPQPVPTLNDQMARPKYQAKSAILHIKETKYVVTGKNPQ
                     ELRVTL"
     gene            complement(21497..23161)
                     /gene="pduC"
                     /locus_tag="OQP62_001463"
     CDS             complement(21497..23161)
                     /gene="pduC"
                     /locus_tag="OQP62_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol dehydratase large subunit PduC"
                     /protein_id="HCS1721049.1"
                     /translation="MRSKRFEALAKRPVNQDGFVKEWIEEGFIAMESPNDPKPSIKIV
                     NGAVTELDGKPVSEFDLIDHFIARYGINLNRAEEVMAMDSVKLANMLCDPNVKRSEIV
                     PLTTAMTPAKIVEVVSHMNVVEMMMAMQKMRARRTPSQQAHVTNVKDNPVQIAADAAE
                     GAWRGFDEQETTVAVARYAPFNAIALLVGSQVGRPGVLTQCSLEEATELKLGMLGHTC
                     YAETISVYGTEPVFTDGDDTPWSKGFLASSYASRGLKMRFTSGSGSEVQMGYAEGKSM
                     LYLEARCIYITKAAGVQGLQNGSVSCIGVPSAVPSGIRAVLAENLICSSLDLECSSSN
                     DQTFTHSDMRRTARLLMQFLPGTDFISSGYSAVPNYDNMFAGSNEDAEDFDDYNVIQR
                     DLKVDGGLRPVREEDVIAIRNKAARALQAVFAGMGLPPITDEEVEAATYAHGSKDMPE
                     RNIVEDIKFAQEIINKNRNGLEVVKALAQGGFTDVAQDMLNIQKAKLTGDYLHTSAII
                     VGDGQVLSAVNDVNDYAGPATGYRLQGERWEEIKNIPGALDPNEID"
     gene            complement(23180..23992)
                     /gene="pduB"
                     /locus_tag="OQP62_001464"
     CDS             complement(23180..23992)
                     /gene="pduB"
                     /locus_tag="OQP62_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduB"
                     /protein_id="HCS1721050.1"
                     /translation="MSSNELVEQIMAQVIARVATPEQQAIPGQPQPIRETAMAEKSCS
                     LTEFVGTAIGDTLGLVIANVDTALLDAMKLEKRYRSIGILGARTGAGPHIMAADEAVK
                     ATNTEVVSIELPRDTKGGAGHGSLIILGGNDVSDVKRGIEVALKELDRTFGDVYGNEA
                     GHIELQYTARASYALEKAFGAPIGRACGVIVGAPASVGVLMADTALKSANVEVVAYSS
                     PAHGTSFSNEAILVISGDSGAVRQAVTSAREIGKTVLATLGSEPKNDRPSYI"
     gene            complement(23989..24273)
                     /gene="pduA"
                     /locus_tag="OQP62_001465"
     CDS             complement(23989..24273)
                     /gene="pduA"
                     /locus_tag="OQP62_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduA"
                     /protein_id="HCS1721051.1"
                     /translation="MQQEALGMVETKGLTAAIEAADAMVKSANVMLVGYEKIGSGLVT
                     VIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRPHTDVEKILPKGISQ"
BASE COUNT         5103 a         6705 c         6998 g         5530 t
ORIGIN      
        1 agggggtagg cataggctgc tctgcctgcg cgctgggcgc ttttccgccc ggggcgctgg
       61 cgcgcaaccc gattgccggc attaacggta aaaccacgct aacgccaagt ttgtgcgaaa
      121 tgtgttcctt tcgttgccct attcaggcgc aggtagtcaa taacaagacc gtttttatcc
      181 agggcaatcc ttctgcgccg cagcagggga cgcgcatatg cgccaggggc gggagcggcg
      241 tcagcctggt caatgacccg caacggattg taaaacctat gaaacgcacc gggccacgcg
      301 gtgacggtga atggcaggtg attagctggc aacaggctta ccaggaaatc gcggcgaaaa
      361 tgaatgccat caaagcgcag catggccccg agagcgtggc tttctcttcc aaatcgggct
      421 cgctctccag ccatcttttc catctggcta cggcctttgg ttcgcctaat acctttactc
      481 acgcctcaac atgccctgcc gggaaagcca ttgcggcaaa agtgatgatg ggcggcgatc
      541 tggcgatgga tatcgctaac acgcgctatc tggtttcgtt tggccacaat ttgtatgaag
      601 ggattgaagt tgccgatacc catgagttaa tgaccgcgca ggagaagggg gccaaaatgg
      661 tgagcttcga tccgcgtttg tcgatatttt ccagcaaggc ggatgagtgg cacgctattc
      721 gtcccggagg ggatttagcg gttctgctgg cgatgtgcca cgtcatgatt gatgaacaac
      781 tctacgatgc gtcttttgtt gagcgttata ccagcggatt tgaacagtta gcacaggcgg
      841 taaaagagac gacgtcggaa tgggccgccg cgcaggccga tgtcccagcc gacgtcattg
      901 tccgggtgac acgcgaactg gccgcctgtg cgcctcacgc tattgtcagt cctggtcatc
      961 gcgcgacgtt ctcgcaggaa gagatcgata tgcggcgtat gatttttacg cttaatgtgc
     1021 tgctcggtaa tattgagcgc gaaggcgggc tatatcagaa aaaaaacgcg tcggtttaca
     1081 acaaactggc cggagaaaag gtcgcgccaa cgctggcgaa actcaacatt aaaaatatgc
     1141 cgaaaccgac ggcgcaacga atcgatctgg tcgcacctca gtttaaatat atcgccgctg
     1201 gcggcggcgt ggtgcaaagc attattgacg cggcgttaac ccagaagcct tacccgataa
     1261 aggcgtggat tatgtcgcgg cataatcctt tccagaccgt cacctgtcgt tcggacctgg
     1321 taaaaaccgt tgagcaactg gatctggtgg tcagctgcga tgtctatttg agcgagagcg
     1381 cggcatatgc cgactatctg ctgccggaat gcacctatct cgaacgggac gaagaggtat
     1441 ccgatatgtc gggtctgcac ccggcttacg ctctgcgcca acaggtcgta gagccgattg
     1501 gcgaggcgcg tccgagttgg caaatctgga aagaacttgg cgagcagttg ggattagggc
     1561 agtactatcc gtggcaggat atgcagacgc gccaactcta tcagttgaac ggcgaccatg
     1621 ccttagcgaa ggaactgcga cagaaagggt atctcgaatg gggcgttccg ctgctattac
     1681 gcgaaccaga atccgttcgt cagtttacgg cgcgttaccc cggcgctatc gcgacggaca
     1741 gtgacaacac ctatggcgaa cagcttcgct tcaaatcgcc ctccggcaaa atcgaacttt
     1801 attccgcaac cctggaggaa ttgctccctg gctacggcgt tccgcgcgtt cgtgactttg
     1861 cgctgaaaaa agagaatgag ctttacttca ttcaaggcaa ggtggccgtg cataccaatg
     1921 gcgcgacgca gtacgtacct ttactcagcg agctaatgtg ggataacgcg gtctgggtcc
     1981 atccgcaaac agcgcaagaa aaaggcatta agaccggcga tgagatctgg ctggaaaatg
     2041 ccacgggtaa agagaaaggt aaggcgctgg tgacgcccgg tattcgcccg gatacgcttt
     2101 ttgtctatat gggatttggc gctaaagctg gggctaaaac ggcggcgacg acacacggta
     2161 tccactctgg caatttactg ccgcacgtga cgagtccggt atccggtacg gtagtgcata
     2221 ccgcaggcgt gacgctgagc cgggcatgag ggaggaggga accatgaatc atttaacgaa
     2281 tcagtacgtc atgctgcatg atgaaaaacg ttgtatcggc tgccaggcgt gtaccgttgc
     2341 ctgcaaagtg cttaatgacg taccggaggg atttagccgc gtacaggtac aaattcgcgc
     2401 ccctgaacag gcatccaacg cactaaccca ttttcaattt gtccgcgtct cctgtcagca
     2461 ctgtgaaaat gcgccatgtg tcagcgtttg tcctaccgga gcgtcatatc gtgatgaaaa
     2521 cgggatcgtg caggtggata aatcgcgctg tattggctgc gattattgtg ttgccgcgtg
     2581 tcctttccat gtgcgctatc tgaatccgca aaccggcgtc gccgacaagt gtaacttctg
     2641 tgccgacacg cggttggcgg ctggccagtc tccggcgtgc gtatccgttt gcccaacgga
     2701 cgcgctgaaa ttcggcagac tggatgagag cgagatccag cgctgggtcg gtcagaaaga
     2761 ggtctatcgc cagcaggaag cgcgtagcgg cgcggtcagt ctgtaccgtc gtaaagaagt
     2821 ccatcaggag ggtaaagcat gaatactatc tggggagcgg aactacatta tgcgccagat
     2881 tattggccgc tgtggttaat ttacgcaggc gtcgtggtgc tgctcatgct tgttgggctg
     2941 gttatccatg cgttattgcg ccggatgctg gcgccaaaaa cggcgggcgg cgaagagcat
     3001 cgtgactatc tctactcgct ggcgattcgc cgttggcatt ggggaaatgc attactgttt
     3061 gttttattac tgttaagcgg tttatttggt catttttctc tcggccctgt agcgctaatg
     3121 gtacaagtgc atacctggtg tggttttgcc ttactggctt tctgggtcgg gtttgtgctg
     3181 atcaacctca ccacaggtaa cgggcgtcac tatcgggtaa atttttccgg actagtgacg
     3241 cgctgcatac gccagacccg tttttacctt tttggcatca tgaaagggga agcgcatccg
     3301 ttcgcggcaa cagagcagaa taagttcaat ccactgcagc aactggcata tctggcgatt
     3361 atgtacgcgc tggtaccgct gttaatcatc accggtttgc tgtgtctcta tccgcaggtt
     3421 gcgggtctgg gccctgtgat gctggtgctg catatggcgc ttgctatcat cggcttactg
     3481 tttatttgcg cgcatctcta tctgtgtact cttggcgaca cgccgggaca aattttccgt
     3541 agcatggttg acggctatca tcgtcatcgt accgcgccgc gcggggataa gtccgccgtc
     3601 tgagcgtatc cataaaataa agtcagcaag aaaatgtgcc ttgtgtcaca ttttcttgca
     3661 atttatccat gtttgtttaa ctgaacttcc gtaaaaagaa cggcaaattg agaccatcct
     3721 gaagacatgc tgttgaaacg ccgtttgttt attgccgctt ctttattcgc gatgcacctt
     3781 tctcctgcgc ttgcggccga tgccgtaagt tttgctcccc aaccgccagc cattgatgca
     3841 ggcgcctggg tgttgatgga ttacactacg ggacaggttc ttaccgccgg taatgaacac
     3901 cagcaacgta atcccgccag ccttaccaag ctaatgacgg gctacgtcgt cgatcgcgcc
     3961 atcgatagtc atcgtatcag ccctgacgat atcgtcaccg ttgggcgcga cgcctgggcg
     4021 aaggataatc cggtgtttgt cggctcctcg ttgatgtttt taaaagaagg ggatcgcgtg
     4081 tcggtacgcg atttaagccg tggcttaatt gtggattccg gtaacgatgc ctgtgtggcg
     4141 ctggcggatt atatcgcggg cgggcagccg cagtttgtgg cgatgatgaa cagctatgtg
     4201 aaaaaactca atttgcagga tacccatttt gaaaccgtcc acggtctgga tgcgccggga
     4261 caacatagct ccgcgtatga tctggccgta ctctcccggg cgattattca cggcgaacct
     4321 gaattttatc acatgtacag cgagaaaagc ctgacctgga acggcatcac acagcagaac
     4381 cgcaacggct tgttatggga taagaccatg catatcgatg ggcttaaaac cggacacaca
     4441 tcgggggcgg gatttaatct tatcgcatcg gcggtggacg ggcagcgtcg acttatcgcc
     4501 gtcgtgatgg gagcgaaaag ttcgaaagga cgcgaggaac aggcgcgaaa actgttgcag
     4561 tggggccagc aaaactttgc gacggtgcag attttgcaca gcggcaaaaa agtgggcagc
     4621 gagcggatct ggtacggaga caaagaaaag attgcgctgg gtacggaaca ggatttctga
     4681 atggcgctgc ccaaagcgga aattccgcat atcaaagcaa aatatgtgct ggatagaaaa
     4741 gagctggagg cgccaatcgc cgcccatcaa cgggtaggtg aaatagagct ctacgatcgg
     4801 gataaactga tcgctcagtg gccgctggtc actctggaat cggtgggtaa aggcggtatg
     4861 ttctctcgtc tgagcgacta ttttcagcat aaagcgtaag ccgttgtcac acaccgttca
     4921 ccgtcatctg aggtgtcaaa agggcgggat tgcgaggttg ctcacaaaat gatcacgctg
     4981 tccttgtgac cgtaaaaggc tgtaattata ctgtacatta atacagtata gtaaagtgac
     5041 ggaggcagca tggattacga aatcaggcag gaacaaaaac gcaagatagc cggtttccac
     5101 atggtcggtc catgggaaca caccgtgaag cagggttttg aacaactgat gacgtgggtg
     5161 gatcgacagc ggatcgtgcc agttgaatgg attgccgtct attacgacaa tccagatgtc
     5221 gtacctgcag aaaaactccg ctgcgatacc gtggtgtccg tggcagagaa tttcatcctg
     5281 ccggacaata gcgaaggcgt aatcgtgacc gccattgaag gcggcgaata tgccactgct
     5341 gtcgcgcgag tggaagaccg tgactttgcg aagccgtggg aacggttttt tgatgtcctc
     5401 gagcaggata gcgcttatca gatagcctct gcgccctgtt ttgaaaccta tctgaataac
     5461 ggcatggaag atggatactg ggatattgaa atgtatattc cggtacagcg gaagtgatcg
     5521 actggtttcc tggctgaaaa gagcggacgg ataatgtgtt ccgtccgcca gtgcgctatt
     5581 tttgctataa agcaggtaca atgcattttt tgccattccc gtaaggagcg caagcgtgcg
     5641 tgccgataag tcattaagcc cttttgaaat acggttgtac cgtcattatc gcatcgtgca
     5701 tggcatacgt atcgccctgg cgttcattct tacctttctg ctggttcgtc tgttttctat
     5761 tcccgagggc acatggccgc taatcacgtt agtggtgatt atggggccca tctcattctg
     5821 gggaaatgta gtgcctcgtg cttttgagcg cataggcggt acgattctgg gcgcggcgtt
     5881 agggctggtg gcgctacgcc tggagctctt ttccttaccg ctgatgctgg tgtggtgtgc
     5941 gatagcgatg tttttgtgcg gctggctggc cttagggaaa aaaccgtatc aggcgctact
     6001 gataggcata acgctcgccg ttgttgtcgg cgctcccgct ggtgatatga atacggcatt
     6061 atggcgtggc ggggatgtga ttttgggggc gctactggca atgttgttta ccggcatctg
     6121 gccccagcgc gcctttttgc actggcgcat ccaactggcg cattgcgtca cggcgtataa
     6181 tcgggtgtat caggcagcgc tgtcgccgaa tttgctggag cgcccccggt tggataaata
     6241 tttgcaacgg ttgctgaacg atgtcgtcaa aatgcgcggg ctgataacgc cagccagtaa
     6301 agaaacccgg atacaaaaat ctattttcga ggccattcag accatcaacc gcaatctggt
     6361 ttgtatgctt gaattacaaa tcaatgccca ctgggcgacg cgcgccagcc attttgtgat
     6421 gcttaacacg cacacattgc gtgaaaccca gcagatgacg cagcaaacct tgctaacgat
     6481 cgcccacgcg ttgtttgaag gcaacccgca gccggtacta gcaaataccg gtaaactgaa
     6541 tgatattgct gccgagttgc gacagctaat gaacgagcag cagggcgacg cggtggctga
     6601 aacccccatc cacggctatg tttggctaag tatggaaacg gcccgacagt tggaactgct
     6661 ttcacacttg atctgccggg ctttgcgcaa ataaaaagca gatggggtga atgaatttgt
     6721 tgctgcttcg attcagcaaa gattaagagt atgatactaa tataaggata aaatgagtgc
     6781 tactggcaac gattttatcc ccgaaccttc aggtttcccc agacggcgac gtaacggtgt
     6841 ttcttctggc ggcttgaagt atgacgggga taaacgtaat gtttatccac tagcagttgc
     6901 ttaacgaatc cgaatctcac attatcaggg gtgtaaaaat ggaaacaacc aagccttctt
     6961 tccaggacgt gctggagttt gttcgtctgt tccgtcgcaa aaataaactg cagcgtgaaa
     7021 ttcaggacat tgagaagaag atccgtgaca accagaagcg tgtgctgctg ctggacaacc
     7081 tgagcgacta catcaagcca ggtatgagcg ttgaggcgat tcagggtatc atcgccagta
     7141 tgaaaagcga ctatgaagat cgcgttgatg actacatcat taaaaatgcc gaaatctcca
     7201 aagagcgtcg cgacatttcc aaaaagctga aagcgatggg cgaaatgaaa cacgccgatg
     7261 taaaagccga ataatgcgct acggcagtgg gagcgtatat caggctctca ctgcagtttg
     7321 accccgcctg tgaccatctt gagtaaatgt tgttttggcc agtgtcgggt aagttttttc
     7381 tctgccagct tacctttcag acgcgcaata tcatgacgtt tccggtccag catcagaccc
     7441 accacgctac cgctatgcgc cacgttcaat ccgtataaat cacactcttc gaccagcgac
     7501 agcagggcgg taaagcccgg cttaggtaac agcgtctggc tggcgatagc gctaagcgta
     7561 gccgcctcac ccagtcggag cggattttgc gttatacagg cttcctgcac cagattccag
     7621 gcctgctgca aggttggtga acttgctatt aatttctgct ggcgagggag acggtggtaa
     7681 tcttgcgtgc gcagtgtgac cgggctttcc agtaccagca aatcgattgg cggcggtggc
     7741 tcgcaggcga tttgcgtggc cgcattatta tgatcaaaca gcgttaactg atgaaaaacg
     7801 gtgctatcag tgggttcgat tgagacgcaa agctgtgcaa gggtggtttc atccagcgaa
     7861 tggccaagat gatgcgccgt tgccaccgcc gtagcggcaa tatctgcggt gctgctggcc
     7921 atgcctttgg caacgggaat tgacgaacgc acatcgacgc gaatctcgtt actccagtgc
     7981 gcaggatact gccagtgcgc cagaacgcgc tccaccatcg cccgcgacaa tggacgctcg
     8041 tttaccaacg gcggcgcagc cgtgactgct acggtgctgt accagtcaac ggggcaggag
     8101 accagtttct cactgcccag aatccatccc tggataagtt ccccgcatga ggcggggcat
     8161 tgcgcaacag ccacgttatc acctttcagg tacgaatagt gtgcgcgcat agtgtcatgg
     8221 taaaagcgtt attaccatga cttgccgcaa tgcgtcgtat acccctctca ggctggtaca
     8281 caaagccctt ccgtggccgg tagcgcaatg cgcataacgt cttgtgcgat cattaactct
     8341 tcgttggtgt tgatgacggc gactttcacc agggcgttct ccgtctggat aaatgttgca
     8401 ttacgttgat ttttctcttc atcaacggct aagcctaaaa attgcaaatt atggcaaacc
     8461 gccgatctgg cgcgcgctga gttctcgcca attcccccag tgaataccag agcatccagt
     8521 cctcccattt gcataatata gccaccaatg gtggcgcgaa tgcgttcggc aaacagcgtg
     8581 agagcgagtt tagcctgccg gttaccggta ttggctgcct gttcgacatc gcggtaatca
     8641 gacgacacgc cagaaacgcc cagcaagcct gactcattat ttaataactg attcaactgt
     8701 tgcggcgttt tgcattcgcg ctgggctatc cacggcagaa tagagggatc aatatctccg
     8761 ctacgggtgc ccatcatcac gcctgactgc ggcgtaaagc ccatcgacgt attgaccgaa
     8821 cgtccgttct tgatggcgca gacgctgcta ccgtttccaa gatgacaaca aatcacccgt
     8881 aatgcgctga gtggtacgcc cagcttttca gccagaacgc cgctgacata cttatggctg
     8941 gtgccatgaa agccataacg gcgaatcccc agttcagcgt aataatgcca gggaagcggg
     9001 taaatatagg cgggttcatc cagcgtctgg tgaaatgccg tatcaaacac ggctacagaa
     9061 ggggcatcag gcaacagttg acgaaaaacg tgaataccca acgcgtttac cgggttgtga
     9121 agcggggcca gttcagcaag acgttcgatt tgcgctaacg tttcatccgt gaccagcgtc
     9181 gagtctttaa aaaactcacc gccgtgcgcc acacgatggc ccaccccgtc aatgtcccgc
     9241 agactgttaa tgatttgata acccagcagc ttttccagaa gcagcgttac cgcatcgcga
     9301 tgatcggcaa cggggacggt ttcctgccat ttttggctgt gcgtcttaat tgtcacctgc
     9361 gcatccgcca taccgatacg ctcaatcagc ccctggcaga gcatgtcgcc ctgcggcatc
     9421 tccagcagct ggaactttaa cgatgagctg ccggcgttaa tggccattat tttgtaagac
     9481 ataaaggttc cttcgaattc agaaaatcca gcacggcgtc gagacccgaa ttattcaacg
     9541 cgctggtaat aaaaatctgc cgggcgccag cctgcgtaag ccattgtgcg accagcgaaa
     9601 tacgctgcgg gtcggcgaga tcggctttgg tgacaaggcc aatcgtcggg cggttcatcg
     9661 ggacggtaaa acccggagaa aacggcgacc actgagcgtc ggcatttaac accagggcga
     9721 taacgtcggc ctcgcaggcg ctggtcagca gggcgctgta caggcagcgg ttctccaggt
     9781 attcgcccgg cgtgtcgata gccatcggcg accattcaat ggcctgggtt ttcttgtaat
     9841 ggagcgcttc gccacgcagg ctttgggtca gcgaagtttt cccgcactgg ctggggccga
     9901 taaacatcag acgcttcatt ggattacgtc cgggtgatcg agcaggtagt gaactgcatc
     9961 atctcgccca gggtgcgcgt tacctgcttg agggcatatt ccacggcgga aacatcgccg
    10021 gtcagcacca cagcaccggt aaagcggtca agaaaaccaa tctccaccgc gccggatttt
    10081 gtagcaatat cgcaggcgat aatcgacgct tcgctgggcg tgatggtgag gatgccaatg
    10141 gcggaaaccg catcctgcag gcccagcttc ttaaataaat ctttccccgg attagcaatc
    10201 aggtgcgcga gggtcacctg tttccccggc acgtattcct gaatcatgcg atccgttgtc
    10261 ggttgtcttt ccattatccc tccaccatct gtcgccacat ggcttcatgc gagcgtggga
    10321 tcaccgaacg gtaaaccagc agcccttttt cgcccgcgct ttcgctggcg accgtcacgg
    10381 cgttattgac gtcagaaacg tcgcccgcca ccaccatgta gcatttaccg ccgatgccga
    10441 aggccatatg cacccgcacc agggtgacgt ttgagccttt caccgcccgg tctgcggcgc
    10501 taatgcaggc cgccacgctc caggtttcga cgatgccgac cgcctgacgc ttatcgacgc
    10561 tgttcaggcc gctgatggcc ggaagtacgc tgggatgaat atttgccagc accaggctgt
    10621 cgacgagcat ctcgccggcc tgcgacgtac cggtttcaat ggcctgctgg atagcgccga
    10681 tatcgccgcc cagcatcagt aaaaacttac ttgggcagat ggtcttgctg accagtagat
    10741 cgacgttggc gcttttcagc atggcatcac caagctccat gcctttggcg atgctggtga
    10801 gttctaaaat tcctatagcc tgagacatgg ttaacctctt acaacagtga tggcctgttc
    10861 gctgatggcc gaaacaatgc cgtcgatgct ggcgtgaatg gatgcgccga gcgcgccagg
    10921 cgggacatcg gcaacgcatt gcccgcgagt cacgcgctcg ccgacggcaa cagtcggtac
    10981 tgcgctggca ccaatatgct ggcgcagctg caaagtgact ttttctactg acggctcttc
    11041 ttcaaccagc ggcgcttcct ggtaccaggg gcttagtccc agtttggcga tcagccgctt
    11101 caccggcacc aggcgatatt tcgccatttc gtcggccgga ttcagcggcc cttcgtagcg
    11161 ctggttttgc gcccgcagct cgcgttttaa catgcggttg atgcgcatcg gcgagatccc
    11221 gaccgggcag gccacgcttt cgcaaacgtt gcattccgag caggtaaggg cgctcagcag
    11281 cagttgcggc gtggcagcct gatgaaagtt caccgcccgc accagcaggt gcggagagag
    11341 ttcgtggccg atcagatgtc gtgggcagag atcggtacag agtcggcact gttcgcagac
    11401 ggtgcgcgcg acggaaagca ctgtgcgctc gtcctgcatc ctgcgctgga taagcggatg
    11461 gctttttggg agcaccagca ggccgccggt agttttcgtc accgggttat caagagaggt
    11521 aatcaggcca cccatcatcg ggccgccgtt aataaaaccg gggttgtcga ccgtcgcgcc
    11581 gccagccagc gccagcactt catgcagtga catgccgaca ggaacggtaa cggtcaacgg
    11641 tctggcgacc gcgccgttca cggtcaacgt gcgacgagtg accggaaact gctgctcgac
    11701 cgcccgggca atattcagca ccgtttgcac gttattgacg actacgccga cgctggcagg
    11761 cagcgcggca ggggcgaccc gacgaccggt tgccatccag atagtcagca cctcatcgcc
    11821 cgcgggatat acatccggca ggatatgcag gcggataccg gctggcagta gtggggagag
    11881 ggcgtcgatg gcccggcggt atttttcttt cagggcaatc accccttcgc gcgcgccggt
    11941 tgccgtcatg gcgtactgca cgccgcggac aagacgcgcg gcctgctgcc acatcagttg
    12001 ctggtcaact ttgagcatcg gttcacactc ggcggcgttc accagaaaaa tctctacctg
    12061 cgcctgtagc ttaacgtggg cgggaaaacc tgcgccgccc gcaccgacaa cgcccgctgc
    12121 gcgaacgcgc tcacgaattt catcggcgct aagggacatt taaacgctgt tgatggcggc
    12181 gctcatagca gttcctccag cagttcacga atttcctcgg cgctggccgg gcgcgggttg
    12241 gtgcgcaacg tgacatccgc cagcgcggcc tgcaccatcg ctggaatacg tgcggaaaag
    12301 tcggatcttc cttcttttag cgcaacggcc agtgagggaa gggcacagcg ttgcttaagc
    12361 agttcgattt gctgaatcag cgcattgatc gccgtgacat cgttggcttc tgccgggcaa
    12421 aaaccgcagg ctttggccag ccgcgcgtag cgtttggctg cgcgcggaac tccggcgtta
    12481 aaacggatca ccgtcgtgag cagcagcgca ttggccaggc catgcggaag atgaaactgt
    12541 ccgccaagct ggtgggctat cgcgtggtta agccccagcc ccgcctggct gaaggccatc
    12601 ccggcgagcg ttgaggcgtt atgcattttt cctcgcgtcg ccacgcagtc gcctttttcc
    12661 accgccgtcg gcagatactg gaacaccagt ttggcggctt tttccgccag cgcgtcggta
    12721 aagtcgctgg cgtgcggtga cacccaggcc tccagggcgt gggtcagcac gtccatgccg
    12781 gtgttggcgg taatctgcgg cggtacgctg accaccagct ccgggtcgag gatcgccata
    12841 tccggataca gcgcattgtt gaacagcgga tacttgatgc ctttatccgg atcgctaatt
    12901 acgcaggcgc tggtgacttc cgaaccagtg ccgctggtgg tcgggatcgc cacgcaggtt
    12961 tcgatattga tgccgctttg ttggctaaac cagacaatcg ctttcgccgc gtccattgcc
    13021 gagccgccgc caaaaccaat caccacctgc ggctgcaggg cctgcatttg cgcaatgccc
    13081 tgcaccacgg tatggatggt ggggtccggc gttatctcgc taaagacgct gatgcggtta
    13141 tctgcgggca gcgcgttaca cagggtatcc agcagcggcg agcgtgccag aaagccatcg
    13201 cagattatcc agatgtgctt attggtaaag cgcttgagca ccgccaggct gccctgaccg
    13261 ctgtacaacc gcgtttgtag tgagaaggtg ttcatcgcga cctcggttag cgaatagaaa
    13321 agccgttggt cagcacgcag cgccgggagc gggcaaaagt acgcgctgac gttgttcctt
    13381 caccggttgg cgtggcaatg gtaaaggtgg taaagccttc gccgccgacg ccgatcccgg
    13441 cataagaagg gccgtttttg acgaatatcg aggtttgcag ggtgcgggcc gcgaggttca
    13501 ggcgcgacac gttctgcgag tgcatgatcg cggtgtgatg caacccctct tcaaccttca
    13561 gggccagtgc cagcgcgcta tcgaaatcgt taacttttac caccggcagc atcggcatca
    13621 gctgttctct ggtgacccac ggatcgtcag cgttaaccag cgcaatcagc agacgcggcg
    13681 cttttgcagg gacagcgatc ccggcggctt ccagcatggc cgatgggctc ttgccgacca
    13741 gttttttatt cgcctggcct tcaggcaggc agacggcgcg gagtttgtcg gtatcggcag
    13801 ggcttagcag cagcgcgccg aaggtttgca tttgctgcac cagacgttcg gcgacgctct
    13861 ccaccacgat caggctcttc tcggcaatgc agggcaggtt gtaatcgaat gacgcgccgt
    13921 tgatgatatc ttccgccgct ttcaccaggt ccgctgtttc atcaacgatg cagggcggat
    13981 tgccagcgcc agcgccaatc accttcttac cgctcttcat gcccatggcc acaatgccgg
    14041 ggccgccggt aatagccagt accgcgattc gcgggtgggc catcatctgc tgggtcgctt
    14101 cgaaagtcgg ttccgccacg gtcaccacca gattgcggat gccgcagcag cggaaggcaa
    14161 tctcttcaat cagactaatc agcttcagag agaccttttt cgctcccgga tgcgggctaa
    14221 agtagatact attgcccgcc gccaacatgc tgatgctgtt attaatgatg gtttccgtcg
    14281 ggttggtgct tggggcgact gaaccgatga cgccaaacgg cgagtattca aagagtacca
    14341 tgccgccgtc accggtcagc gcggtggtgg tgagatcttc tacgcccggc gtgttgtcca
    14401 gagcagcctt gtttttgagg aatttatctt ctttgttgcc cattcccgtt tcattggcgc
    14461 tctcctctgc cagagcagcc agcagcggcg tcagctcctg acgcatcgcg ctgataatgg
    14521 cgctgcgggt ttttagcggg cactgctgat aacgtaagaa cgcctgatgc gcggcgtcga
    14581 tggcctcgct cacggactgg aaaatccctt tgccctgagg ctgggccggt gtttgcgctg
    14641 gcgtggttaa ttgctcgcta agaatggtgc gaatcagggt ttcgagttca gaagtattca
    14701 ttgatgtgtt cccacgttaa tagccgcgat ggcggtctgt gctatgtcca tgtcctgctc
    14761 aacgctgccg ccactgatgc caagaccccc aattaatatg ccgtcgcgcc atagggcgta
    14821 accgccgcca aaggtgacca cttttccctg taaatgactt tccagaccgt aaagcgccgc
    14881 gcctggctga acgacatcgc tcagctcatg ggtcgccgtt ttcatcgcca ctgcggtcca
    14941 tgcctttttc ggtgccagtt cgctgctgac cagcagggcg tccggcatcc gccaggtcac
    15001 agtttccgtg ccgtgcgcgt caacgatgct gacgactacc ggaacctgca gttgctgcgc
    15061 gcgttcaacg gcggcgcggg tgagctggtg cagatcgtgg aatgagaggg ccacgggcgt
    15121 tgtctccttg ctgcgggtcg gctggctggc agccagatag cgcttgctaa cttcacggat
    15181 gatgttggcc tggtgcgcat cgctatcttc cgcgcgggcc agggcgtaca ggcagtccga
    15241 taagcggttg atgtagcgca tcagcacttg gcgtacgttg acttcagttg ccagttcaac
    15301 cagacggcgt tcggcgcggc gcgccagcgt gcgggcaaaa tgtaatcggc tcgcggcttc
    15361 gcagcgtccg ggtaaaataa agctgtgcag cggttcgacg cgggccattg cccgatcgat
    15421 agcggcttcc agggccgaaa tctcttcgct gctgatgtag cgctgtttgg gcgatggctg
    15481 ctcgctgtcg ctggccagct ctgcgctaaa ccaaaaaagt tgctgctgga tggcctcgag
    15541 taaggtgcgg tgattttcat ccgcagcggc gcaggcgcac aggctcagcg cggcgttcag
    15601 ttcatccagc gtgccgtagg cttcaacccg cgggtgggtt ttgctcaccc gctggccggt
    15661 aaacagtgat gtggtgccag cgtcacctgt tcgggtataa atcgccataa ccgcccctta
    15721 acgcgaaagc gtatctacaa tgccgacaac ggcgaggtcg atggcctcat ttggcccgga
    15781 aaaaacgtgc ctggcgctgg agccgccgct gagcaaaacc agttcgccga cgcccgcgcc
    15841 gacggagtcc acggccactt catcgccgga ggtgggcgag gcggggagtt cgccatcggc
    15901 gctgacccga cgcaccagca gcagcttttc ccaatcaaag aaggtgattt ttgcgtggag
    15961 acaaccgcgc ccgtgactcg tgccagatgc atgatttact cctgcttaat taattgaata
    16021 ttccgcgcat tggccgcgtc acgcgccatg gcggtcacga tgcatttgcg gtggacaacc
    16081 acacgccccc ggcttagcag cgcgacatcg cgatagccca gcaccgaacc cgcatgcaga
    16141 accagcggca gtccgtgctc gtcggtgaat accagcggca gacgagccag tttttttacc
    16201 gggataaccg gcagcagctg gctgtgcagg ctgagctgta cgcggatgcc aaacgccagc
    16261 gcgtcgtgaa ttttccgggc tgcggcatcg tcggtttctg catccgcaag ctgacccagc
    16321 agcggcaggt cgacgagcag gatgcgcagc gacgcgtgct gacagaacag cgctggacag
    16381 tcggcatcgc gaagctgcgc aacgctcagc gttgccgtgc tcagggcacg acgctgcagt
    16441 cgggagacaa tctcctcgac aatgcgctgc agagtttcgc cgttcatcgc gggcctacca
    16501 gccgggcaaa ggcctgcggg ttatcggcac cagcggcgtt ggcttcatcg gtatcaatgt
    16561 gcatttcgag gcgcatgtcc ggtgaaacgc gaatcgccac attgttgaaa atcagcccgc
    16621 gctcgtcgcc ttcaatcgct accgaaaccc tatcgccgtg ggagaccttc aggatcagcg
    16681 catcaagcgg cgacatatga atatgccgct gcgcgacgat aaccccggaa ggtagctcca
    16741 gttcgccaaa ggggctgacc aggcggatgc caggtgtgcc cttcaggttg ccggacattc
    16801 tcagcggcgc ggcaatcccc agtgttctgg catcggtacg cgatatttct acctggctta
    16861 ccgagcgcag cgggccgagc aggcgcacat ttttgagctg tcctttcggc cctaccaggg
    16921 tgacggtttg ctccgtagca tattgtcccg gctgcagtag cgcttttttt tcgctgatgg
    16981 gatggccggg aaacagccgc tcataatcct gcgcggacag gtggatatga cggtttgaga
    17041 cgcccagcgg aataggccgc tggcgcatct cgtcgagaac tttacggacc gttgattgca
    17101 gaagctcttt atccattacg cttcacctcg cttgccggaa tgaatgcaaa gcgtacgagg
    17161 ttcgcccttc tggcgcggac attttggatc cagacacaga ttgcagctga ccagttctga
    17221 ttcctgcggg gcctcttcgg ctggcgcttc agaaacgaca tcagctatct ctgacgcttc
    17281 aggctcaggt tcaatgacgg agggggaggg tgtctctgcg agcaggatcc cttctccggg
    17341 cctggcgata accttgtggg ccaccagacc attccgctgt tcggcaaatt gcgcaccggt
    17401 ggtgatggcc gcctgcacgg aggccacatc accggcaatt ttaatcacca tccagcctga
    17461 accattggtc ttttcgaggg cgagcagcgt gatagaagcg gatttcgcca tgatatcggc
    17521 gcagctgata gccagtgcca gaccacaaac ttcaagtaat cccagtgatt gcttcacgcg
    17581 gtgctcctta ttcgccatcg attaggctga tttcggtaaa atggcctcaa catcgctgtg
    17641 cggacgcggg ataacgtggc aggatttcac ttcacccacg acgcttgccg ccgcgctgcc
    17701 ggcatctacg gctgctttaa ccgcgccgac gtcgccgcga accatgactg taaccaggcc
    17761 agaaccaatt ttttcgtagc ccaccagctg tacgttggcg gatttaacca tggcgtcggc
    17821 agcttcaatg gcgcctacta acccttttgt ttcaaccagt cccagtgcgt tattcatact
    17881 gcagttctcc tgttgcttag ctattcagat cccggaaagg gatccctttg accagccgtg
    17941 ccgcgttatt accggtgttg cgttgggcct gactgtcctg atgatgcatc agcgtaaaaa
    18001 gcggcgccga tgcgggtaaa ttcttgtaat gtacgaccag cgagtgtcga tcgcaggcaa
    18061 tgccgaccag cagcggcgag ctgcgcgccg cctgccaggc gctgtcaacg acatctccag
    18121 ctgggtgatg ctgaagcagg aaagggatgc cttcctcttc aatgcccagc agcacttcgt
    18181 gccagaggct ggcgcagtcg ttgatgacgg taatgacgat agccggggcg ctgtgattac
    18241 tgtccatatg caaactcctt gtgccaggag agaatcagac cggtggccac cgcgtttctt
    18301 gggccttcgc tgccgcgaat atttcctcgc ccggcgacta ggcggtagtg cgccagcgca
    18361 tcggtgacca actgcggaac ttcgaaatcc agcgacgagc cgccgaccag caccacgaac
    18421 ggaatatcgc gaatgttgcc ggttggactg acctgacgca gcgcgcgcag ggcgttggtg
    18481 acaaagacgc gttctttagc gctgcggcga atggcgcgca ctttttccag cgctaagtcg
    18541 ccgggaagcg gcaccagttc gtccggtttc accacgcaga cgcgggcgaa caccgcagga
    18601 ggcagcggcg tcgggaagaa ctggacgctg ccgtcctcgt ggcgtaagtg gaacaggctt
    18661 tcgaccttag ccagcgggta ttttttgatc tcttccgcca gatagcggtc ttccagcccc
    18721 agttcgcggg caataatcat cgtgaccatg tcgcctgccc cggcgagatg ggtggcgatg
    18781 atttcacctt tagggttgat gatggaggca tcggtggagc ccgcgccgag gtcgaggatc
    18841 gccagcggtc gggtggtacc cggcgtggtc agcgcgccca gaatggcggc ttcagcctca
    18901 gcgccgccga tctgcacgtc gatattaagc ttctgctcaa tttcacgggc aatcatcgcc
    18961 atttgcagac ggtctgattt caccatcgag gcgatgccga cggcctgctc cagcgagaac
    19021 tccccggcca gaccgccggt gacgctcacc ggaaccgagg tgtcaacggc cagaagatcc
    19081 tgaatgaaaa tctcgctgct cggcttattg gttagctcgg ccatggtctg gcgcacatgc
    19141 tccagcatgc cgccgatatt ggtcccggcc tcgccgttga cgttgtcgag cttgccgtag
    19201 ccgtccaccg ctttcatgat agcttcggca ccggcggcaa catccacgcg cacggtacga
    19261 ccctgagcct gcagctccag gttaccggcg ggtattgcgc gcgctttgac gtcgccggat
    19321 ggcgttttaa ccaccacggc ggaacggttg ccaatcagcg cgcgcgccat cgggacgatg
    19381 tttttcgtct catcggcgtt gaggttgaat acggtggcga tgccgtaagg gttagagagg
    19441 gtttcgataa cctttcccgg cacggcgact tcaatcgccg ccagcatccc cagcggaatg
    19501 cagtcgatgt acagaacttc atcgacaatc ggtagcgatt tttccagccg gttgctgacc
    19561 agtacgccat cgtcgcgctg caaaatgacg ccggtaatct ggtatccggc gcgcattgag
    19621 gcgttgataa cattggcgat atcagcaaaa tcaaaggctg acgataccac cagaatatag
    19681 gacgagtccg ccgggcgggt taacagctcc tccggcgtaa tcgtgatacc cacaccaagg
    19741 cctgctccgc ccggcgtttt tgggttatgg ccgatcattg tcgattcggt gatgatggtt
    19801 tcggtaatgg tttccatcgc cacatcgcca atcaccggcg tggcttcgtt aatgcggatg
    19861 agcgaaatat cgctgacatt gatccccgcg cgctttgcga cgagggcgag cgcttcctga
    19921 atgccgaaca cgttacgcaa cgtgcctttg atcccggtgt tttccgccag cgcgctgtgt
    19981 gtaatcgtta gtgcgccagt ctcatcttgc cgcgccagtg cgacttccgt tgatgagtta
    20041 ccgatgtcaa tgccagctat atatcgcatc gtatatcctt tttctcgtcg tacttcaaac
    20101 tgcctttttg ttggctgcgt tctttcaccc gaatcactta ctacagtaag ctcatcgggg
    20161 ttatgaggga catccctgtc cctcactaaa gccagcctat ggctgttcaa attcgttcca
    20221 gacgaatttg tcactcactt gccgcctcaa tgcatctcga attacttaga gaaagctaat
    20281 cgtcgccttt gagtttttta cgctcaacgt acagccctgc cgcttcacga acgaaagctg
    20341 cgcaaatctt tgcctgataa cggttttcga gatcgtcggc gatagcgagc agctcttctt
    20401 tcgttgaacg atacggacga agggcgttgt agatttcaag aatgcgatcg tccggtaccg
    20461 cggtcagttc ggcggcgcgt tcgaagttca tcgccagccg gtcgcggccc gcatctttgg
    20521 cgatagacgc ctgtaagcgc agggttttcg gggtaatacg catatcctga gcggtgactt
    20581 tattgctcag cacgttttcc agcgtaaagt cgtccagcgt tttattggtg gcggttttca
    20641 cccattccgg gtgtttgttc gccagcgggt agtcgctgac ctttgcgctg cgggacgtgc
    20701 cgcctgccgc aggagccgct gctggcgcat cgccctgcag gctgttcatg cggctcaata
    20761 cgtcccggac catcgattca attgcgtcgg tattcatgga gttatccttt atcaaagcgt
    20821 cacgcgcagt tcctgcgggt ttttgcccgt cacgacgtac ttggtctctt taatgtgcaa
    20881 aatggccgac tttgcctggt acttcgggcg tgccatctgg tcatttagcg tagggaccgg
    20941 ctgcggtgat tcgcgtttcg catagcgggc ggcgttttta ccaatctgac ggtaggtttc
    21001 cagcgtcagc agcggcgcct gcgggaacag ctccaggttg gagagcggcg gtagcccctg
    21061 ctggtggata accgtagtat ctttcgactg gatgccgatg gagatgccgg agccgctcag
    21121 gcggttacct tcaacggcga cgaacgccac gtcggaagat ttaaagcagc gaatcacgcg
    21181 cgccctgata ccttcttctt caataccggc aatgacttcg cgcaggatgc tcttatgcgg
    21241 taagccgacg atattaacag tctgtgccag gccaaatgcc gggccgacgg cgataatgac
    21301 ttcgtcctgc tgagtgccct ggcgtgcttc gcccacttcg gtcagaaagc cgtcgcccgc
    21361 aggcgcagcg gtctgtggtg ctgtggatgc cgcaggcgta ttaaacgaga cgggtttatc
    21421 gctgcccttc atatcgcgga gcacgtcttc aattatctgg cgcagcaatt tttcattaat
    21481 ttccatttct caccccttaa tcaatctcgt tgggatcaag agcgccaggg atgtttttaa
    21541 tctcttccca gcgttctccc tgcaggcgat aacctgttgc cggaccggca tagtcattga
    21601 cgtcattaac cgcagagagc acttgtccgt cgccgacgat aatggcggag gtgtgcaaat
    21661 agtcgccggt tagcttggct ttctggatgt tgagcatgtc ctgggccacg tcggtaaacc
    21721 cgccctgcgc cagcgcttta acgacttcca gaccgttgcg gtttttattg atgatttcct
    21781 gggcgaactt gatgtcttcg acgatgttac gctccggcat atctttcgaa ccgtgggcat
    21841 aggtcgcggc ttcaacttct tcatcggtaa tcggcggcag ccccattccg gcaaacacgg
    21901 cctgcagcgc gcgggcggct ttgttacgga tggcgataac gtcctcttca cgaaccgggc
    21961 gcagaccgcc gtccactttc aggtcgcgct ggataacgtt gtagtcgtca aagtcttccg
    22021 catcttcgtt ggaaccggcg aacatgttgt cgtagttcgg caccgcggaa taaccagagg
    22081 agataaagtc ggtacccggc aggaactgca tcagcaggcg cgcggtacga cgcatatcgg
    22141 agtgggtgaa ggtctggtcg ttactggagg agcattccag atccagcgaa gagcagatca
    22201 ggttttccgc cagcacggca cgaatgcctg acggcacggc agacggtacg ccgatacagc
    22261 ttacggagcc attttgcaga ccctgaacgc cagccgcttt ggtgatatag atgcagcgcg
    22321 cctccagata cagcatggat ttgccttcgg cgtagcccat ctgcacttcg gatccggagc
    22381 cggaggtgaa gcgcattttc aggccgcgag aggcgtagga agaggctaag aagcctttcg
    22441 accatggcgt atcgtcaccg tcggtgaaga ccggctcggt gccgtaaacg gaaatggttt
    22501 cggcgtagca ggtgtggccc agcatgccga gcttcagctc ggtggcttct tccagggagc
    22561 actgagtcag tacgcccgga cgaccaacct gagagccgac caacagcgcg atggcgttga
    22621 acggcgcgta gcgtgctacc gcaaccgtgg tttcttgttc gtcaaacccg cgccatgcgc
    22681 cttcggcggc atcggcggca atttgcaccg ggttatcctt gacgttggtg acgtgcgcct
    22741 gctgagacgg cgtgcggcgt gcgcgcattt tctgcatcgc catcatcatc tcaaccacgt
    22801 tcatatgcga aaccacttca acaattttcg ccggggtcat ggcggtggtc agcggaacga
    22861 tttcgctgcg cttgacgttc ggatcgcaga gcatgttagc cagcttgacc gaatccatcg
    22921 ccatcacttc ttcggcgcgg ttcaggttga tgccgtagcg ggcgataaag tggtcgatca
    22981 ggtcgaattc gctaaccggt tttccgtcca gctcggtcac cgcgccgtta acgattttaa
    23041 tcgacggttt tggatcgttc gggctttcca tcgcgataaa gccttcttcg atccactcct
    23101 taacgaagcc gtcctgattc acagggcgtt tcgccagtgc ttcaaatctt ttcgatctca
    23161 tgaatcagcc tcgtgggtat cagatgtagg acgggcgatc gtttttcggt tcagaaccga
    23221 gggtcgcaag gacggttttg ccgatttcgc gggcggaggt caccgcctga cggaccgcgc
    23281 cggagtcgcc ggaaatcacc agaatggctt cgttactaaa gctggtgccg tgcgccggag
    23341 agctgtacgc cacgacttca acgttggctg acttcagggc ggtatcggcc atcagtacgc
    23401 caacggaagc cggagcgccg acgatgacgc cgcaggcacg gccaatcggc gcgccgaacg
    23461 ctttttccag ggcgtagctg gcgcgagcgg tgtactgcag ctcgatatgc ccggcttcgt
    23521 tgccgtaaac atcgccgaag gtgcggtcca gctctttcag cgcgacttcg ataccgcgct
    23581 tgacgtcgga aacgtcgtta ccgcctaaaa taatcagcga accgtggccc gcgccgcctt
    23641 tggtatcgcg cggcagctca atgctgacca cttcggtgtt ggtggctttc accgcttcgt
    23701 ccgccgccat aatgtgcggg cctgcgccgg tgcgggcgcc gagaatgccg atggaacgat
    23761 agcgcttctc aagtttcatc gcgtccagca gggcggtatc gacgttggcg ataaccaggc
    23821 caagggtatc gccaatggcg gtcccgacaa attccgttaa actgcagctt ttttctgcca
    23881 tagccgtctc tcgtataggt tggggttgac cagggatggc ctgttgttcc ggcgttgcca
    23941 cacgggcaat cacctgcgcc atgatctgtt ccaccagctc attgctgctc attggctaat
    24001 tcccttcggt aagatttttt ctacatcggt gtgagggcgt gggatgacgt gtacggcttt
    24061 cacttcaccc acgttgcgtg cggctgcggc acctgcatcg gtggccgctt tgaccgcgcc
    24121 aacatcgccg cgcacgatga cggttaccag cccggagcca atcttttcat agcccactaa
    24181 catcacattg gctgacttaa ccattgcatc agcggcctct atggctgcgg ttaagccttt
    24241 ggtttctacc attcctagtg cttcttgttg cataaagacc tcgcatggag tgttccgata
    24301 gttgggacta taagaagatg cgaggaaaaa gaatgg
//
LOCUS       DAJVSD010000044        24192 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.044, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000044 DAJVSD010000000
VERSION     DAJVSD010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 24192)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24192)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24192
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.044"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..965
                     /locus_tag="OQP62_001466"
     CDS             <1..965
                     /locus_tag="OQP62_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YiiG family protein"
                     /protein_id="HCS1721052.1"
                     /translation="EKKADEQPVAQSADSSASNTQSTSAESADANDVLNQKLNVYIDC
                     YNNLQADIYRAVNRYANTFDDFRTGPTGKEDDPSPLVPVYPAFIQDCRKDIKAAAELK
                     PAFASLDSAALAFINAAGPLAETINSMNKYYDQDNFKDDAFAGAKAFHKTFIKQFDEF
                     DPIAKKYIAEITIMSKQHAANEIKATEKKEGKSIKYYTLLTMQEAETLNDAVADASFD
                     VAAVSKQLADFEEHTQKLNEKINVDIDKHRSFPGFISELEKFQGKVKKRIRRVRDNVA
                     YTSHEQDYLNSGSGDMVDGSYKAVVKAYNELIDTYNGYHLEREF"
     gene            complement(1241..2077)
                     /gene="fdhD"
                     /locus_tag="OQP62_001467"
     CDS             complement(1241..2077)
                     /gene="fdhD"
                     /locus_tag="OQP62_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HCS1721053.1"
                     /translation="MNNILSEEVLNVTDFTTSRQLTLWKREDLQSSQLDDVAEEVPVA
                     LVYNGISHVVMMASPKDLTHFAMGFSLSEGIIDSPREIYGMDVVPSCNGLEVQIDLSS
                     RRFMGLKARRRALAGRTGCGVCGVEQLNDIGKPVQPLPFSQTFNLGNLDRALKHLNDF
                     QPTGKLTGCTHAAAWVMPSGELAGGHEDVGRHVALDKLLGRRATEGEEWRQGAALVSS
                     RASYEMVQKSAMCGVEILFAVSAATTLAVDVAERCNLTLVGFCKPGRATIYTHPQRLI
                     AD"
     gene            2272..5322
                     /gene="fdnG"
                     /locus_tag="OQP62_001468"
     CDS             2272..5322
                     /gene="fdnG"
                     /locus_tag="OQP62_001468"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:2857..2859,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HCS1721054.1"
                     /translation="MQVSRRQFFKICAGGMAGTTAAALGFAPGVALAETRQYKLLRTR
                     ETRNTCTYCSVGCGLLMYSLGDGAKNAKASIFHIEGDPDHPVSRGALCPKGAGLVDFI
                     HSESRLKFPQYRAPGSDKWQQISWEEAFDRIAKLMKEDRDANYQAQNAEGVTVNRWLT
                     TGMLCASASSNETGYLTQKFSRALGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV
                     DIKNANLVVVMGGNAAEAHPVGFRWAMEAKIHNGAKLIVIDPRFTRTASVADFYAPIR
                     SGTDIAFLSGVMLYLLTNEKYNREYTEAYTNASLIVREDFGFDDGLFTGYDADKRQYD
                     KTSWHYELDENGFAKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKADFLKVCE
                     YIAETSAKDKTASFLYALGWTQHSIGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN
                     IQGLTDLGLLSQSLPGYLTLPSEKQTDLQTYLAANTPKPLLKDQVNYWGNYPKFFVSM
                     MKAFFGDKATAENSWGFDWLPKWDKGYDVLQYFEMMKQGKVNGYICQGFNPVASFPNK
                     NKVVASLSKLKYLVTIDPLNTETSTFWQNHGESNDVDPSKIQTEVFRLPSTCFAEENG
                     SIVNSGRWLQWHWKGADAPGIAMTDGEILAGIFLRLRKMYSEQGGANPEQVLNMTWNY
                     TKPYEPASEEVAMESNGKALADLIDPATGAVVVKKGQQLSSFAQLRDDGTTSSGCWIF
                     AGSWTPEGNMMARRDNADPSGLGNTLGWAWAWPLNRRILYNRASADPQGNPWDPKRQL
                     LKWEGGKWAGWDIPDYSAAAPGSDVGPFIMQPEGMGRLFAIDKMAEGPFPEHYEPFET
                     PLGTNPLHPNVISNPAARIFKDDADALGKADKFPYVGTTYRLTEHFHYWTKHALLNAI
                     AQPEQFVEIGEKLANKLGIAHGDTVKVSSNRGYIKAKAVVTKRIRTLKADGKDIDTIG
                     IPIHWGYEGVAKKGFIANTLTPFVGDANTQTPEFKSFLVNVEKV"
     gene            5335..6237
                     /gene="fdxH"
                     /locus_tag="OQP62_001469"
     CDS             5335..6237
                     /gene="fdxH"
                     /locus_tag="OQP62_001469"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit beta"
                     /protein_id="HCS1721055.1"
                     /translation="MAYQSQDIIRRSATNGFTPAPQARDHQEEVAKLIDVTTCIGCKA
                     CQVACSEWNDIRDEVGNNVGVYDNPADLTAKSWTVMRFSEVEQNDKLEWLIRKDGCMH
                     CADPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNPEDNRVYKC
                     TLCVDCVVVGQEPACVKTCPTGAIHFGSKEDMKTLAGERVAELKTRGYDNAGLYDPAG
                     VGGTHVMYVLHHADKPNLYHGLPENPEISETVKFWKGVWKPLAAFGFAATFAASVFHY
                     VGVGPNRAEEEDDNLHEEKDEVRK"
     gene            6234..6869
                     /gene="fdoI"
                     /locus_tag="OQP62_001470"
     CDS             6234..6869
                     /gene="fdoI"
                     /locus_tag="OQP62_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase cytochrome b556 subunit"
                     /protein_id="HCS1721056.1"
                     /translation="MKRRDTIVRYTAPERINHWIVAFCFVLAAVSGLGFLFPSFNWLM
                     HILGTPQLARILHPFVGVVMFASFIIMFFRYWHHNLINRDDIFWAKNIRKIVVNEEVG
                     DTGRYNFGQKCVFWAAIIFLVLLLVSGVIIWRPYFAPAFSIPVIRFALMLHSFAAVAL
                     IVVIMVHIYAALWVKGTITAMVEGWVTRSWAKKHHPRWYREVRKTTEKETE"
     gene            6866..7795
                     /gene="fdhE"
                     /locus_tag="OQP62_001471"
     CDS             6866..7795
                     /gene="fdhE"
                     /locus_tag="OQP62_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HCS1721057.1"
                     /translation="MSIRIIPQDELGSSEKRTADMIPPLLFPRLKNVYNRRAERLREL
                     AENNPLGDYLRFAALIAHAQEVVLYDHPLEMDLTARIKEANDQGKPPLDIHVLPRDKH
                     WQKLLHSLIAELKPEMNGPALAVIENLEKASEQELEQMASALFASDFASVSSDKAPFI
                     WAALSLYWAQMASLIPGKARAEYGEARQYCPVCGSMPVSSMVQIGTTQGLRYLHCNLC
                     ETEWHVVRVKCSNCEQSRDLHYWSLENEQAAVKAESCGDCGTYLKILYQEKDPKVEAV
                     ADDLASLVLDARMEQEGFARSSINPFLFPGEGE"
     gene            complement(7833..8207)
                     /locus_tag="OQP62_001472"
     CDS             complement(7833..8207)
                     /locus_tag="OQP62_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HCS1721058.1"
                     /translation="MVKGSALFDTNILIDLFSGRIEAKHALEAYPPQNAISLITWMEV
                     MVGAKKYHQENRTRIALSAFNIIGVTQEIAERSVIVRQEYGMKLPDAIILATAQVHRC
                     ELVTRNTKDFADIPGVITPYHL"
     gene            complement(8207..8449)
                     /locus_tag="OQP62_001473"
     CDS             complement(8207..8449)
                     /locus_tag="OQP62_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix protein, CopG family"
                     /protein_id="HCS1721059.1"
                     /translation="MMAGMDMGRILLDLSDDVIKRLDDLKVQRNLPRAELLREAVEQY
                     LERQDRAETTISKALGLWQGCEEDGVEYQRKLREEW"
     gene            8654..9583
                     /locus_tag="OQP62_001474"
     CDS             8654..9583
                     /locus_tag="OQP62_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS1721060.1"
                     /translation="MALESGIAQLVEEFIAAGRPSSREQNIDDRRAGYIASTTLAGET
                     ETRVQVEDIELDAMTFRVVSPLNATGKLPCIIYYHGGCFVSGGFATHDNQLRQLAFYS
                     RCRVIAAQYRLAPEHTFPAAHNDAETGANTIWKYAQKLGIDRENITLAGDSAGGHLAL
                     VTALRLKAARQWQPAQLILIYPMLDATARFASYTCNGLDYIITRDTLLSGYEMYMPRT
                     DPLHPEASPLWREDFAGLPSTHIITAEFDPLRDEGEALYQRFQEQGVECTCQRYLGVI
                     HGFFQLGGVSKTARDAIRDVAWRVVSPSTSKMT"
     gene            9669..9980
                     /locus_tag="OQP62_001475"
     CDS             9669..9980
                     /locus_tag="OQP62_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HigB family
                     toxin"
                     /protein_id="HCS1721061.1"
                     /translation="MHVISRKLFNEAMLMYPNHELALTELLNVLEKKTFTQPEEMKRY
                     IPSLDNFKYRDKWWVIDVSGNSLRLISYIDFRLHKIFVKHIVSHAEYDKLTAYYRGNE
                     E"
     gene            9977..10423
                     /locus_tag="OQP62_001476"
     CDS             9977..10423
                     /locus_tag="OQP62_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462910.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HigA family
                     antitoxin"
                     /protein_id="HCS1721062.1"
                     /translation="MRTHRQMDATSAKKIVDTFSDAVKSVPLMGEDRNDNEYRRALAL
                     VEFLVDHDDLENPLFELLCARISEYEKHAPEFKALNQHLEKTPPGVSVLRTLMDQYGL
                     KAADLANELGSKSNVSNILNGRRALTVNHIKALTQRFKLPADAFIE"
     gene            complement(10438..11379)
                     /gene="fabY"
                     /locus_tag="OQP62_001477"
                     /gene_synonym="yiiD"
     CDS             complement(10438..11379)
                     /gene="fabY"
                     /locus_tag="OQP62_001477"
                     /gene_synonym="yiiD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001666856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid biosynthesis protein FabY"
                     /protein_id="HCS1721063.1"
                     /translation="MYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDGWDALAH
                     HQMVVDEEGNLVAVGRLYINADNEASIRFMAVHPSVQDKGLGTLMAMTLESVARQEGV
                     KRVTCSAREDAVEFFAKLGFVNQGEITTPTTTPIRHFLMIKPVASLDDILHRGDWCGQ
                     LQQAWYEHIPLSEKMGVRIQQYTGQKFITTMPETGNQNPHHTVFAGSLFSLATLTGWG
                     LIWLMLRERHLGGTIILADAHIRYSKPISGKPNAVADLGSLSGDLDRLARGKKARVQL
                     QVELLGGETAGAIFEGIYIVLPAKPFGPYEEGGNEEE"
     gene            complement(11424..11861)
                     /gene="dtd"
                     /locus_tag="OQP62_001478"
     CDS             complement(11424..11861)
                     /gene="dtd"
                     /locus_tag="OQP62_001478"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000560980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HCS1721064.1"
                     /translation="MIALIQRVTRASVTVEDEVTGKIGPGLLVLLGVEKEDDEQKANR
                     LCERVLGYRIFSDVDGKMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSGGAAPDRA
                     QALYEYFVERCRQQAINTQTGRFAADMQVELVNDGPVTFWLQV"
     gene            complement(11858..12730)
                     /locus_tag="OQP62_001479"
     CDS             complement(11858..12730)
                     /locus_tag="OQP62_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor BrkB family protein"
                     /protein_id="HCS1721065.1"
                     /translation="MLKTVHQKAGRHTRPVRAWLKLLWQRIDEDNMTTLAGNLAYVSL
                     LSLVPLIAVVFALFAAFPMFSDVSIQLRHFIFANFMPATGDVIQRYIEQFVANSNKMT
                     AVGACGLIVTALLLMYAIDSALNTIWRSKRTRPKVYSFAVYWMILTLGPLLAGASLAI
                     SSYLLSLRWASDLNTVIDNVLRILPLLLSWISFWLLYSIVPTTRVPNRDALVGAFVAA
                     LLFEAGKKGFALYITMFPSYQLIYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGEYR
                     KLKQAAEQEEADQP"
     gene            complement(12724..13323)
                     /gene="yihX"
                     /locus_tag="OQP62_001480"
     CDS             complement(12724..13323)
                     /gene="yihX"
                     /locus_tag="OQP62_001480"
                     /EC_number="3.1.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphatase"
                     /protein_id="HCS1721066.1"
                     /translation="MLYIFDLGNVIVDIDFNRVLGVWSDLSRVPLASLKQKFTMGETF
                     HQHERGEITDEAFAEAFCHEMALSLSYEQFAHGWQAVFVGLRPEVIAIMHKLREQGHR
                     VVVLSNTNRLHTHFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQKEGFSAAD
                     AVFFDDNADNIEGANQLGITSILVKDKATIPDYFAKLLC"
     gene            complement(13514..14317)
                     /locus_tag="OQP62_001481"
     CDS             complement(13514..14317)
                     /locus_tag="OQP62_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1721067.1"
                     /translation="MSLTELTGNPRHDRLLMLIDERGYMNIDELASLLEVSTQTVRRD
                     IRKLSEQGLITRHHGGAGRASSVVNTAFEQREISWTQEKKAIAEAVADYIPDGSTIFI
                     TIGTTVEQVARALLNHNHLRIITNSLRVAHILYNNPRFEVMVPGGTLRPHNSGIIGPS
                     AAAFVAGFRADYLVTSVGAIESDGALLEFDVNEASVVKTMMAHSRHILLAADHTKYHA
                     SAAVEIGNVSQITALFTDEYPGPALQNLLQSQQIEVVQVSPSLDDAVSA"
     gene            complement(14351..15247)
                     /locus_tag="OQP62_001482"
     CDS             complement(14351..15247)
                     /locus_tag="OQP62_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462904.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1721068.1"
                     /translation="MVRIACVGITVMDRIYYVEGLPTEGGKYVAKRYTEVGGGPAATA
                     AVAAAKLGAQVDFIGRVGDDDTGNSLLAELESLGVNTRYTRRYTQAMSSQSAIMVDAK
                     GERIIVNYPSPDLLPDADWLNDIDFSQWDVVLADVRWHDGAKQAFTLARQAGVMTVLD
                     GDITPQDISELVALSDHAAFSEPGLARLTGMSEAIDALKKAQMLTNGHVYVTRGSEGC
                     NWLEKAAVRHQPGFTVEVVDTTGAGDVFHGALAFGLASGYAIEEAVRFASGVAALKCT
                     RPGGRAGIPDCEQTRSFLSLFV"
     gene            15412..16308
                     /gene="yihU"
                     /locus_tag="OQP62_001483"
     CDS             15412..16308
                     /gene="yihU"
                     /locus_tag="OQP62_001483"
                     /EC_number="1.1.1.373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfolactaldehyde 3-reductase"
                     /protein_id="HCS1721069.1"
                     /translation="MAVIAFIGLGQMGSPMASNLLKQGHQLSVFDINPDAVQRLVDKG
                     AQPASSPAQTTIGAEFVITMLPNGDLVRSVLFGEQGVCETLSREALVIDMSTIHPLQT
                     DKLIADMQSKGFSMMDVPVGRTSDNAITGTLLLLAGGTTEQVERATPVLMAMGNELVN
                     TGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTT
                     TWPNKVMKGDLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYNLARAAGRGR
                     EDWSAILEQVRISAGLTANVKK"
     gene            16331..17209
                     /gene="yihT"
                     /locus_tag="OQP62_001484"
     CDS             16331..17209
                     /gene="yihT"
                     /locus_tag="OQP62_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfofructosephosphate aldolase"
                     /protein_id="HCS1721070.1"
                     /translation="MNNYTIKDITRASGGFAMLAVDQREAMRLMFAAAGAKTPVADSV
                     LTDFKVNAAKILSPYASAVLLDQQFCYRQAVEQNAVAKSCAMIVAADDFIPGNGIPVD
                     NVVIDKKINAQAVKRDGAKALKLLVLWRSDEDAQQRLDMVKEFNELCHSNGLLSIIEP
                     VVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGKGARSDLLTASQRLNGHI
                     NMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSSVIGLPDTELMLRDVSAPK
                     LQRLGEIVDEMMAKRR"
     gene            17225..18361
                     /gene="yihS"
                     /locus_tag="OQP62_001485"
     CDS             17225..18361
                     /gene="yihS"
                     /locus_tag="OQP62_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015606244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfoquinovose isomerase"
                     /protein_id="HCS1721071.1"
                     /translation="MKWFNTLSHNRWLEQETDRIFNFGKNAAVPTGFGWLGNKGQIKE
                     EMGTHLWITARMLHVYSVAASMGRPGAYDLVDHGIKALNGALRDKKYGGWYACVNDQG
                     VVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDE
                     AFSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRAIRIASVIIHDVARNNHYRVNE
                     HFDSQWNPIRDYNKDNPAHRFRAYGGTPGHWIEWGRLMLHLHAALEARFETPPAWLLE
                     DAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAMGTAYALYTLTGD
                     SQYEEWYQKWWDYCIKYLMDYENGSWWQELDADNKVTTKVWDGK"
     gene            18470..19326
                     /locus_tag="OQP62_001486"
                     /pseudo
     CDS             18470..19326
                     /locus_tag="OQP62_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462900.3"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldose-1-epimerase"
     gene            19370..21406
                     /locus_tag="OQP62_001487"
     CDS             19370..21406
                     /locus_tag="OQP62_001487"
                     /EC_number="3.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HCS1721072.1"
                     /translation="MNSLPQRSTDFELTTSQDGFALSWQQRLILRHSAENPCLWIGAG
                     VADIDMFRGNFSIKDKLNEKIALTEATVSELPDGWLVQFSRGATISATLRISADEAGR
                     LTLDLQNDDLHHNRIWLRLAANPDDHIYGCGEQFSYFDLRGKPFPLWTSEQGVGRNKT
                     SYVTWQADCKENAGGDYYWTFFPQPTFVSTQKYYCHVDNSCYMNFDFSAPEYHELALW
                     EDKTTLRFECADTYIALLEKLTALLGRQPELPDWVYDGVTLGIQGGTEVCQQKLDTMR
                     NAGVKVNGIWAQDWSGIRMTSFGKRVMWNWKWNSDNYPQLDSRIKQWKEEGVQFLSYI
                     NPYVASDKDLCAEAARHGYLAKDATGGDYLVEFGEFYGGVVDLTNPEAYDWFKDVIKK
                     NMIALGCSGWMADFGEYLPTDTYLHNGVSAEIMHNAWPALWAKCNYEALQETGKLGEI
                     LFFMRAGYTGSQKYSTMMWAGDQNVDWSLDDGLASVVPAALSLAMTGHGLHHSDIGGY
                     TTLFDMKRSKELLLRWCDFSAFTPMMRTHEGNRPGNNWQFDGDAETIAHFARMTTVFT
                     TLKPYLKQAVAQNAATGLPVMRPLFLHYENDAATYTLKYQYLLGQDLLVAPVHEQGRC
                     DWTLYLPEDHWVNIWTGEAHHGGEITVDAPIGKPPVFYRAKSEWALLFASLRNI"
     gene            21452..22834
                     /locus_tag="OQP62_001488"
     CDS             21452..22834
                     /locus_tag="OQP62_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1721073.1"
                     /translation="MSQTSSNPATIRLPFKEKLAYGLGDLGSNILLDIGTLYLLKFYT
                     DVLGLPGTYGGIIFLIAKFFTAFTDMGTGIMLDSRRKIGPKGKFRPFVLYAAFPVTLL
                     AIANFVGTPFEVTGKTVVATMLFMLYGLVFSMMNCSYGAMVPAITKNPDERASLAAWR
                     QGGATLGLLLCTVGFVPVMNLIEGNAQLSYIFAATLFSLFGLLFMWLCYAGVKERYVE
                     VKPVDSAQKPGLLQSFRAIAGNRPLFILCIANLCTLGAFNVKLAIQVYYTQYVLNDPI
                     LLSWMGFFSMGCIFIGVFLMPGAVRRFGKKKVYIGGLLIWVAGDLLNYFFGGGSVSFV
                     AFSCLAFFGSAFVNSLNWALVSDTVEYGEWRTGVRSEGTVYTGFTFFRKVSQALAGFF
                     PGWMLTQIGYIPNVVQSAGTVEGLRQLIFIYPCVLAVITIIAMGCFYNLNEKMYVRIV
                     EEIEARKHTV"
     gene            22880..>24192
                     /locus_tag="OQP62_001489"
     CDS             22880..>24192
                     /locus_tag="OQP62_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1721074.1"
                     /translation="MSNHDPLTLKLSLREKCAYGVGDFGSNLMLCIGTLYLLKFYTDE
                     LGMPAYYGGIIFLVAKFFTAFTDMLTGVLLDSRRNIGAKGKFRPFILYASFPVALVAT
                     AQFFATHFTLPVKTAFATVLFMLFGLFYSLMNCSYGAMVPAITKNPHERAQLAAWRQG
                     GATIGLLLCTVGFMPIQALFTRSPSLGYLVAAVIFSVCGLFSMWWCFSGVKERYIETV
                     PDTHKPSILKSFCAIFRNPPLLVLCVANLCTLAAFNIKLAIQVYYTQYVLNDIHLLSW
                     MGFFSMGCILIGVLLVPDAVKRFGKKQVYLGGLILWAVGDILNFIWGGTSFLFVIFSC
                     IAFFGTAFVNSLNWALVPDTVDYGEWKTGIRAEGSVYTGYTFSRKISAALAGFLPGIM
                     LTQIGYIPNIAQSDTTLLGLRQLIFLWPCGLAIIAALTMGFFYKL"
BASE COUNT         5810 a         6436 c         6361 g         5585 t
ORIGIN      
        1 atgaaaaaaa agcggacgaa caacctgtag ctcagagtgc ggattcatca gcgagcaata
       61 cacaatccac atcagcggaa agcgcagatg cgaacgatgt tcttaaccaa aagctgaatg
      121 tttacattga ttgttataat aatctccagg cagatattta ccgtgctgta aatcgttatg
      181 ctaacacatt cgacgatttc cgcaccggtc ctaccggtaa ggaagacgat ccctctccgc
      241 tggttcctgt gtatcctgca tttatccagg actgccggaa agacatcaag gcggcggctg
      301 aattaaagcc ggcgtttgcc tctctggata gtgctgctct ggcatttatt aatgcggctg
      361 ggccactagc tgaaacaatc aatagtatga ataaatacta tgatcaagat aacttcaagg
      421 atgatgcctt tgctggcgct aaagcgttcc ataaaacgtt tataaaacag ttcgatgagt
      481 ttgatcccat tgcgaaaaaa tatatcgccg agattaccat tatgagtaag cagcatgcgg
      541 ctaatgaaat taaggcgacc gagaagaaag aaggtaaatc cattaagtac tatacgcttt
      601 tgacgatgca ggaagccgag acgcttaatg acgctgtagc tgatgcttct tttgatgtgg
      661 cggcagtaag caaacagctc gctgattttg aagagcatac tcagaagcta aacgagaaga
      721 tcaacgttga tatagataaa catcgtagct tccctggttt tatttctgag ctggaaaaat
      781 tccagggcaa ggtgaaaaaa cgcattcggc gcgtgcgcga taacgtggcg tatacctcgc
      841 atgagcagga ctacctcaat agcggcagcg gcgatatggt agatggttct tataaggctg
      901 tggttaaagc ttataacgag ctcatcgaca cctataatgg ctatcatctt gagcgtgagt
      961 tctaagcttt tcacgctgca aatcgcgtgc atatgaccgc tgaactgagc aaataagtcg
     1021 ttaccgactg tcgaaagagc gccccagggg cgcttttttc gttcgaagta ttaccgggta
     1081 gcaagcgcct cgttaatgac tggaataagc tgcggtccag cttaaaaacg attaaaacct
     1141 gtatggcctc gccactatac gtgtatacgt gattccgtta tcaagagagg ctgtaaaatt
     1201 gagaaaatat atattttacg aaaatgtaga gggtactatt ttagtctgcg attaaccgct
     1261 gcggatgggt ataaatcgtc gcccgacccg gcttacagaa ccccaccagc gtaagattac
     1321 accgttcagc gacgtcaacc gcgagcgtgg tagcagcaga aaccgcaaac aaaatttcca
     1381 caccgcacat cgccgacttc tgcaccattt cgtaactcgc acgactggaa accagcgccg
     1441 cgccttgccg ccattcctca ccttccgtag cgcggcggcc gagcagttta tccagcgcaa
     1501 cgtggcgtcc gacatcttca tggccccccg ccagttcacc cgacggcatg acccacgccg
     1561 cagcgtgcgt acaacccgtc agcttacccg tcggttgaaa atcattcaga tgttttaacg
     1621 cgcgatcaag gttaccgaga ttaaacgttt ggctaaacgg cagcggttgc accggcttac
     1681 caatgtcatt gagctgttcc acgccacaca cgccgcaacc ggtgcgtccg gccagcgcgc
     1741 gacgacgcgc tttcagcccc ataaatcgac ggctggaaag atcaatctgc acttcaagtc
     1801 cgttacagga cggcacaacg tccatgccat agatttcacg cgggctgtca atgatccctt
     1861 ccgacagaga aaaccccatt gcgaaatgcg tcagatcttt cggagaggcc atcataacga
     1921 catgcgaaat gccgttatac accagtgcca ctggcacttc ctcggcaaca tcatcaagtt
     1981 gggaggactg caaatcctcg cgtttccaga gtgtcaactg gcgtgaggtt gtgaaatcag
     2041 tcacatttag gacttcttca gacagtatat tgttcacttt cttttaacca tataagaaca
     2101 cacacaccaa cattatggta ttctgttaca actcctcccg gatggaggaa aatttatcca
     2161 attctgaacc tttgcgggcc cgtccgcaaa gaaaaataac aaccactccc tgagcgtttc
     2221 agatagagaa atgtgaaaga gaagtgacaa tgtcgaaaca aggagcaaac catgcaggtc
     2281 agcagaaggc agttctttaa gatctgcgct ggcggtatgg caggcaccac ggcggcggca
     2341 ctgggcttcg cgcccggcgt agcgctagcg gaaacacggc aatataaact gctgcgcacc
     2401 cgcgaaaccc gtaacacctg cacctactgt tccgttggct gcgggctgtt gatgtacagc
     2461 ctcggcgacg gtgcgaaaaa cgccaaagca tctattttcc atatcgaagg ggacccggat
     2521 catccggtaa gccgtggcgc gctgtgcccg aaaggggccg gtctggtgga ctttatccac
     2581 tctgaaagcc gcctgaaatt cccgcaatac cgcgcgccgg gttcagataa gtggcaacag
     2641 atcagttggg aagaagcgtt tgaccgcatc gctaaactga tgaaggaaga tcgcgacgcc
     2701 aactatcagg cgcagaacgc cgaaggcgtt accgttaacc gctggctcac caccgggatg
     2761 ctgtgcgctt ccgcatccag taacgagacg ggttatttaa cgcaaaaatt ctcccgcgcg
     2821 ctgggtatgc tcgcggtcga caaccaggcg cgtgtctgac acggaccaac ggtagcaagt
     2881 cttgctccaa catttggtcg cggtgcgatg accaaccact gggtcgacat caagaacgcc
     2941 aacctcgtcg tggtgatggg cggtaacgcc gcagaagctc acccggtcgg gttccgctgg
     3001 gcgatggaag ccaaaattca caacggcgcg aagctgattg tgatcgatcc gcgcttcacg
     3061 cgtaccgcgt cggtggccga tttttatgcg ccaatacgct ctggtactga cattgccttc
     3121 ttgtcaggcg tgatgctgta tctgctgacc aacgaaaaat acaaccgtga atacaccgag
     3181 gcctatacca atgccagcct gatcgtgcgt gaagattttg gcttcgatga tggtctgttc
     3241 accggctatg acgcagacaa gcggcagtac gataaaacca gttggcacta tgagctggac
     3301 gaaaacggtt ttgccaaacg cgatacgaca ctgcaacacc cgcgctgtgt ctggaatctg
     3361 ttgaaacagc atgtctcacg ctatacgccg gacgtggtag aaaatatctg cggtacgccg
     3421 aaagcggact tcctgaaagt gtgcgagtac attgcagaaa ccagcgcaaa agataaaacc
     3481 gcgtcgttcc tgtacgcgct gggctggacg cagcattcca tcggcgcgca gaacatccgt
     3541 actatggcga tgatccagct tctgctcggt aacatgggga tggcgggcgg cggcgttaac
     3601 gccctgcgcg gtcactccaa cattcaggga ctgaccgact taggactgct gtcgcaaagt
     3661 ctgccgggct atctgacgct gccgagcgaa aaacagaccg acctgcaaac ctatctggct
     3721 gccaatacgc cgaagccatt gttgaaggat caggtcaact actggggcaa ctatccgaaa
     3781 ttcttcgtct cgatgatgaa ggccttcttt ggtgataaag cgacagcgga aaatagctgg
     3841 ggcttcgact ggctaccgaa gtgggacaaa gggtacgatg tactgcagta cttcgagatg
     3901 atgaaacagg gcaaggtcaa cggctatatc tgccagggct ttaacccggt ggcttcattc
     3961 ccgaacaaaa acaaagtggt cgcgtcgctt tccaaactga agtacctagt gactatcgat
     4021 ccgctcaaca cggagacctc caccttctgg caaaaccacg gtgagtcgaa cgatgttgat
     4081 ccgtcaaaaa tccagaccga agtgttccgt ctgccttcca cctgttttgc cgaagagaat
     4141 ggttcgatcg tcaactcggg tcgctggctg cagtggcact ggaagggcgc ggacgccccg
     4201 ggaattgcca tgaccgacgg cgaaatcctc gccggtatct tcttacgcct gcgtaagatg
     4261 tactctgaac agggcggcgc caacccggaa caggtgttga atatgacctg gaactacacc
     4321 aaaccgtacg aacccgcctc tgaagaagtg gcgatggaaa gtaatggtaa agcgctggcc
     4381 gatcttatcg acccggcaac cggcgcggtg gtagtgaaga aaggtcaaca gctcagttcg
     4441 ttcgcgcaac tgcgtgatga cggtacgacg tccagcggct gctggatttt cgccggtagc
     4501 tggacgccgg aaggcaacat gatggcgcgt cgtgataacg ccgacccgtc tggtctcggc
     4561 aacacgctgg gctgggcatg ggcatggccg cttaaccgcc gtattctgta taaccgcgct
     4621 tccgccgatc cgcagggtaa cccctgggac ccgaaacgtc agctactgaa atgggaaggc
     4681 ggaaaatggg ccggatggga tattccggac tacagtgccg ctgcgccagg cagcgacgtc
     4741 ggaccgttta tcatgcagcc ggaagggatg ggtcgcctgt ttgctatcga taagatggcg
     4801 gaagggccgt tcccggaaca ctacgagccg tttgaaacgc cgctgggcac taacccgctg
     4861 cacccgaacg ttatctctaa ccctgccgcc cgtatcttta aagacgatgc cgacgcgctg
     4921 ggtaaagcgg ataagttccc gtatgtcgga accacttacc gtctgaccga gcacttccac
     4981 tactggacca agcacgcgtt gcttaacgct atcgcccagc cggaacagtt tgtggaaatt
     5041 ggcgagaagc tggcgaataa gctcggtatc gcgcatggcg ataccgtgaa ggtctcctcg
     5101 aaccgcggct atatcaaagc caaagcggtg gtgaccaagc gtattcgcac gctgaaagcg
     5161 gacggcaagg atatcgatac catcggtatt cctattcact ggggctacga aggcgtggcg
     5221 aaaaaaggtt ttatagccaa tacgttaacg cctttcgtcg gcgatgcgaa cacgcaaacg
     5281 ccggagttta aatccttcct tgtgaacgtg gaaaaggtgt aacggagacg acctatggct
     5341 tatcaatcgc aagacatcat tcgtcgttcc gccactaacg gtttcacccc cgcgccccag
     5401 gcgcgggacc accaggaaga ggtggcgaaa ctcatcgacg tcaccacctg tatcggctgt
     5461 aaagcgtgtc aggtggcgtg ctccgagtgg aacgacatcc gtgatgaagt gggcaataac
     5521 gtcggggtgt atgacaaccc ggcggactta actgcgaaat cctggacggt gatgcgcttc
     5581 tcggaagtgg aacagaacga caaactggag tggctgatcc gtaaggatgg ctgtatgcac
     5641 tgcgccgatc ccggctgcct gaaggcctgt ccggcggaag gggcgatcat tcagtacgct
     5701 aacggtattg tcgacttcca gtccgagcag tgtatcggct gcggctactg tatcgctggc
     5761 tgcccgttca acgtgccgcg cctcaacccg gaagacaacc gcgtctataa atgtacgctg
     5821 tgcgttgact gtgtggtggt cggccaggaa ccggcctgcg tgaagacctg tccaaccggc
     5881 gctattcatt ttggctcgaa agaggatatg aaaacgctgg cgggcgagcg ggtggcggaa
     5941 ctcaaaaccc gtggttatga caatgcgggt ctgtacgatc cggcgggcgt aggcggtacg
     6001 catgtcatgt acgtgctgca tcatgccgac aagccgaatc tgtatcacgg tctgccggag
     6061 aacccggaaa tcagcgaaac cgttaagttc tggaaaggcg tctggaaacc gctcgccgcg
     6121 ttcggttttg ccgcgacctt tgccgccagc gtcttccact atgtcggcgt cggcccgaac
     6181 cgcgcggaag aggaagatga caacctgcat gaagagaaag acgaggtgcg caaatgaaac
     6241 gacgtgacac catcgtgcgc tatacggcgc cggaacgcat caaccactgg atcgtcgcct
     6301 tctgcttcgt gctggcggcg gtgagtgggc tgggcttttt attcccatcc ttcaactggt
     6361 tgatgcatat cctgggcacc ccacaactgg cgcgaattct gcacccgttt gtgggcgtgg
     6421 ttatgtttgc ctcgttcatc atcatgtttt tccgttattg gcaccacaat ctaatcaatc
     6481 gggatgatat cttttgggca aagaatattc gtaagatcgt cgtcaacgag gaagtgggtg
     6541 acaccgggcg ttataacttc ggtcagaaat gcgtattctg ggcggcgatt atcttcctgg
     6601 tgctgctgct ggtgagcggg gtaattatct ggcgtccgta ctttgcgcct gctttctcaa
     6661 tcccggtgat ccgattcgcg ttaatgttgc attcttttgc cgcagtagcg ttaattgtgg
     6721 ttatcatggt gcatatctac gccgcccttt gggtgaaagg caccattacc gcgatggtgg
     6781 aaggctgggt aacccggtcg tgggcgaaga aacatcaccc acgctggtac cgagaagtcc
     6841 gcaagacaac ggaaaaagaa actgaatgag tattcgcata atcccgcaag atgagctggg
     6901 gtcgagcgag aaacgtacgg cggatatgat tccgccgtta ttgttccccc gactcaaaaa
     6961 cgtctacaac cgccgcgccg aacgtctgcg cgagctggct gaaaataacc cgctgggcga
     7021 ttacctgcgc tttgccgcgc ttatcgcgca cgcgcaggaa gtggtgctgt acgaccatcc
     7081 gctggagatg gatctgaccg cacgcattaa agaagcgaac gaccagggca agccgccgct
     7141 ggatatccac gtgctgccgc gtgataagca ctggcaaaaa ctgctgcatt cgttaattgc
     7201 cgagctaaaa cccgagatga acggccccgc gctggcggtg attgagaacc tggagaaagc
     7261 ctcagagcag gagctagagc agatggccag cgcgctgttt gcctcggatt ttgcctccgt
     7321 cagcagcgat aaagccccgt ttatctgggc cgcgctctcc ctttactggg cgcaaatggc
     7381 cagcttgatt ccaggcaaag cccgcgcgga atacggtgaa gcgcgccagt attgcccggt
     7441 atgcggttcg atgccggtct ccagcatggt gcaaatcggc accacgcagg ggctgcgtta
     7501 tctgcactgt aacctgtgcg aaaccgaatg gcacgtcgtg cgcgtaaaat gcagtaactg
     7561 cgaacagagc cgcgacttac actactggtc gctggaaaat gagcaggctg cggtgaaagc
     7621 cgaaagctgc ggcgattgcg ggacttacct gaagattctc tatcaggaaa aagacccgaa
     7681 agtggaagca gtggccgacg acctcgcctc gctggtgctg gacgcgcgca tggaacagga
     7741 gggcttcgcc cgaagctcta tcaacccgtt cctgttcccg ggggaagggg aataagtttt
     7801 ttactcagac cgggcgaagt ttgccgtccg gtctacaagt gatacggcgt gatcactccc
     7861 ggaatatcgg caaagtcttt tgtattgcgc gtcacaagct cacaacgatg gacttgtgca
     7921 gtggccagaa tgatcgcatc cgggagtttc atgccatact cctgcctgac aatgacgctt
     7981 cgttccgcga tttcctgtgt tacgccaata atattgaacg cacttaatgc aatgcgcgtg
     8041 cggttttcct gatgatattt cttagcaccc accatcactt ccatccatgt gataaggcta
     8101 atcgcatttt gtggcggata cgcttccagc gcatgtttcg cttcaattcg accgctaaac
     8161 aggtcgatga ggatattggt atcaaaaagc gcagaccctt tgaccattac cattcctcac
     8221 gaagtttacg ttggtattca acgccatctt cctcacagcc ttgccagagc cccaatgctt
     8281 tcgaaattgt ggtctcagcc cgatcctgtc tttccagata ctgctcaacg gcctcccgca
     8341 agagttctgc acgaggtagg ttgcgttgca ccttgagatc gtcaagccgt ttaatcacat
     8401 cgtctgataa atcgagtaaa attctgccca tatccatccc agccatcata ctcacatata
     8461 cctccagtat atcattcgcg cttatttttc aaacaacata cacctgagac tgacgagaaa
     8521 atagttatta cgcgaacgat ttttattttt gcgagccgct ttccagaatc gtacgcagcc
     8581 caattttccc attttcattc gaaccaaatc gagttataaa actgtatatc catacagata
     8641 aaggcaatga aaaatggcac tggaaagcgg gattgcgcag ttagtggagg aatttatcgc
     8701 ggcgggacgc ccctcttctc gcgaacagaa tattgatgac cggagggcgg gctacatcgc
     8761 tagcacgaca ttggcaggag aaacagaaac ccgcgtccag gttgaagata ttgaactcga
     8821 tgccatgacg tttcgcgtgg tttcgccgct caatgccaca gggaaattac cctgcatcat
     8881 ttattatcat ggtggctgct ttgtcagcgg cggttttgcc actcacgata accagttaag
     8941 gcagttagct ttttacagcc gttgtcgcgt gattgcggca cagtaccgac ttgcaccaga
     9001 gcacaccttc ccggccgcac ataacgatgc cgaaaccgga gccaatacta tctggaaata
     9061 tgcccagaaa ctggggatag atcgcgagaa cattacgctt gctggtgaca gcgcgggtgg
     9121 gcatctggcg ctggtcaccg cgctacgcct gaaagccgcc cgtcaatggc aacctgcaca
     9181 gctgattctg atctacccca tgctggacgc aaccgccagg tttgcgagct acacctgtaa
     9241 tgggctggat tacattatca cgcgtgacac gctgctttca ggctacgaga tgtatatgcc
     9301 gcgaaccgat ccactgcatc ctgaagccag tccgctctgg cgtgaggact tcgccggtct
     9361 gccatccacg cacatcatta ctgccgaatt cgacccactg cgcgatgagg gcgaggccct
     9421 gtatcaacgg ttccaggaac agggtgtgga atgcacttgc cagcgctatc tcggcgttat
     9481 ccacgggttt ttccaattgg gcggagtgag caagacggcg cgggacgcaa tacgcgacgt
     9541 ggcctggcgt gttgtaagtc catcaacaag caaaatgacc taaaattcaa ttttgttttc
     9601 aacttgaaaa ctggataacg ttgcgctaaa ttgttttcag gttgaaaact ttgtaatgga
     9661 actacattgt gcatgttatc agccgaaaac tgttcaatga agcgatgctc atgtatccaa
     9721 accatgagct tgctctcact gagttgctga atgttctgga gaaaaaaaca ttcactcagc
     9781 ctgaagagat gaagcggtat attccttcgc tggataattt taagtacaga gataaatggt
     9841 gggtgattga tgtttctggt aacagcctga gactcatttc ctacatagat ttcaggttac
     9901 ataagatatt tgtgaaacat atcgtttccc atgccgaata tgacaaactg accgcatatt
     9961 atcggggtaa tgaagaatga gaactcatcg tcagatggat gcaaccagcg caaaaaagat
    10021 cgttgatacc ttcagcgatg cggtaaaaag cgtcccactg atgggggaag accgaaatga
    10081 caatgagtat cgcagggcac tagcgctagt ggagtttctg gtcgaccacg acgatcttga
    10141 aaacccacta tttgaattgc tctgtgcccg aatcagtgaa tacgaaaaac atgcgccgga
    10201 attcaaagca ctcaaccaac acctggagaa aacgccccct ggcgtttcag tattgcgaac
    10261 gctcatggat caatacggtc tcaaagcagc agatcttgcc aacgaacttg gttctaaatc
    10321 gaacgtcagc aacatcttaa atggccgcag agcactaacg gttaatcata ttaaagcgct
    10381 tacacaacgc tttaaactac cagcggatgc cttcatcgag tagttggata tgtccagcta
    10441 ctcttcctca ttcccgccct cttcatacgg gccgaacggt ttcgcaggta gtacgatata
    10501 aatgccttcg aaaattgccc cggcggtctc gccgcccaac agttcaacct gcaactggac
    10561 acgcgctttt ttaccccgcg ccagcctgtc caaatcaccg cttagcgacc ccaaatcagc
    10621 cacggcgttt ggctttccgc taatgggttt actgtagcga atatgggcgt cagcaagaat
    10681 aatcgtcccg cccaggtggc gttcacggag catcagccag ataagtcccc atccggtcag
    10741 cgtcgccagg gagaacaggc tgccggcaaa caccgtgtga tgcggatttt gattaccggt
    10801 ttccggcatc gtggtgataa atttttgccc ggtgtactgc tgaatgcgca cccccatctt
    10861 ttcactcaat ggaatgtgct cataccaggc ctgctgaagc tgcccgcacc aatcgccgcg
    10921 atgcaggata tcatccagcg atgctaccgg tttaatcatc agaaaatggc ggattggcgt
    10981 ggttgtgggc gtagtaatct ccccctgatt gacaaacccg agtttggcaa agaactcaac
    11041 cgcatcttcg cgcgcgctgc aggtgacgcg cttaacgcct tcctggcggg cgacagactc
    11101 cagggtcatc gccattaatg tccccagccc tttatcctgt accgagggat gtacagccat
    11161 aaaacggata gacgcctcgt tatctgcatt gatatacagg cggcccactg caactaagtt
    11221 tccttcttcg tccaccacca tttgatggtg cgccaacgca tcccagccat cccgttccga
    11281 ccctttcggc tggtgcagcg gtttacgcag catctcccag cgaaactggt agtaacgttc
    11341 taattcttct tctgtttgcg gaactcgaag gtgatacata gccgtactct ctcttgttat
    11401 ccgcggccac gccggaagct gactcatacc tggagccaga atgtcacggg accgtcatta
    11461 accagctcaa cctgcatatc ggcagcgaag cgtccggttt gcgtgtttat cgcctgctgg
    11521 cggcagcgtt cgacaaaata ttcataaagc gcctgcgcgc gatccggcgc agccccgccg
    11581 gaaaagcttg gccgcatacc gcgttcggta tctgccgcca gcgtaaactg cgacaccacc
    11641 agcacgctgc cgccagcctg ttgtacattc agattcatct tgccgtcaac atcgctgaag
    11701 atacggtatc ccagcacgcg ctcgcacaga cgattcgctt tttgttcgtc atcttctttt
    11761 tcgacaccca ataacaccaa aagtcctggg ccgattttac ccgtcacctc gtcctccacg
    11821 gtgacgctgg cacgggttac gcgttgaatt aatgcaatca tggttggtca gcttcttctt
    11881 gttctgcggc ttgtttgagt tttcggtatt ccccgagagt gacagttatt tctgcgccaa
    11941 gcaagactat acaccaggtc cagtataccc agacaaacag gatagggatc actgccagta
    12001 cgccataaat gagctgatat gacgggaaca tggtgatata aagcgcgaaa cctttctttc
    12061 cggcctcgaa cagcaacgct gcgacaaacg cgccgacaag ggcgtcacgg ttcggtacgc
    12121 gagttgttgg gacaatactg taaagtaacc agaatgagat ccacgagagc agcagcggaa
    12181 ggatgcgcaa tacattgtcg atgaccgtat tcagatcgct ggcccagcgt aaagaaagca
    12241 gataggagct gatcgccaga ctggcaccgg cgagaagcgg gccgagcgtg aggatcatcc
    12301 agtacaccgc aaaagagtac acttttgggc gtgtgcgttt gctgcgccag atagtgttta
    12361 aggcgctatc aatggcgtac atcaacagca atgccgtcac aatcagtcca caggcgccca
    12421 ccgccgtcat tttgttggag ttagcgacaa actgctcaat atagcgctga atcacgtctc
    12481 cggtggctgg cataaagtta gcaaaaataa aatggcgtaa ctgaatgctg acatcagaaa
    12541 acatcggaaa agcagcgaaa agggcaaaaa cgacggcaat aagcggtact aaggagagta
    12601 atgagacata ggcgaggttt cccgccagag tcgtcatatt atcctcatcg atacgctgcc
    12661 ataatagctt gagccaggcc cgaacagggc gcgtatggcg tccagctttt tggtgaacgg
    12721 tttttagcat aacagcttcg cgaaatagtc agggatggtg gctttatcct tcaccagaat
    12781 gctggtgatc cccaactggt tggccccttc tatattatcg gcattgtcgt cgaaaaagac
    12841 cgcatcggca gcggaaaaac cttctttctg caggacgtgc tgataaatac gcgcttccgg
    12901 tttacgcatt cccaaatcct gcgataaata gatatggtcg gcggcagcgc gcacctccgg
    12961 gtattcctcc ggccagaagt gggtatgcag tcggttagta ttggataaca ccaccacgcg
    13021 atgcccctgc tcgcgcagtt tatgcatgat agcaatcact tcgggccgta atccgacaaa
    13081 taccgcctgc cagccgtgcg caaattgttc ataactgagc gataacgcca tttcatgaca
    13141 gaaagcttca gcaaacgctt cgtccgttat ctcaccgcgt tcatgttggt gaaaagtctc
    13201 gcccatcgta aatttttgct tcagcgaagc caacggtact cgactcaggt cgctccacac
    13261 acctaatacg cggttaaagt cgatatcgac aatcacatta cctaaatcaa agatgtagag
    13321 catgtcattc tccttgctaa ccggggatga ataactgtag cgggaaagga gaagtttgac
    13381 tatgtatccc tttataaatc aattaacaaa aagacaatag aaacgcagac gatgcccaat
    13441 atcgcctgca tcacagcgcc gttttattgg ccggataaag cgctgacgcg accctccggc
    13501 gcaagggcgc ttgtcacgct gaaacggcgt cgtccagcga aggactcacc tgaaccactt
    13561 cgatttgctg ggattgaagt aaattctgta atgccggacc gggatactcg tccgtaaaca
    13621 gagcggtaat ctgtgacaca ttgccgatct caaccgccgc agaagcatgg tatttcgtat
    13681 gatcggcggc cagcagaata tgtcgcgagt gagccatcat ggttttcact acgctggctt
    13741 cgttgacatc aaactccagt aacgcgccat cgctctctat cgcgcctacg ctggtgacga
    13801 gatagtccgc ccggaacccc gccacaaacg ccgccgcgga tggcccgata atgccgctat
    13861 tatgcgggcg cagcgtgccg ccaggcacca tcacttcaaa gcgagggtta ttataaagaa
    13921 tgtgcgcgac gcgcaggcta ttggtgataa tgcgcagatg attatggttg agcagcgcgc
    13981 gcgccacctg ctcaaccgtc gttccaatcg tgataaatat cgtggagcca tccggaatat
    14041 agtcagccac ggcttccgca atggcttttt tctcttgcgt ccaggagatc tctcgctgct
    14101 caaaggcggt attgaccaca ctggacgctc tgccagcgcc gccgtgatga cgcgtaatca
    14161 gcccctgctc gcttaattta cgaatatcgc ggcgaaccgt ctgggtagag acctccaaca
    14221 aactggctaa ctcatcgata ttcatatagc cgcgctcatc aataagcatt aacagccgat
    14281 cgtgtcgcgg attaccggtc agttcggtaa gactcatgag cattcctcta aaagcttcct
    14341 actgctcata ttatacaaaa agtgacaaga aagatcgggt ttgctcacaa tcagggatac
    14401 ccgcccggcc acccgggcgc gtacacttca gcgcggcaac gccgctggcg aatctgacag
    14461 cctcttcgat agcgtatccg cttgccaggc caaatgccag tgcgccatga aaaacatcgc
    14521 ccgcgccggt agtatccacc acctccacgg taaaacccgg ttggtggcgt accgccgctt
    14581 tttccaacca gttgcagcct tcgctgcctc gcgtgacata gacatgtcca tttgtgagca
    14641 tttgtgcttt ttttagcgca tcaatggctt cgctcatccc cgtcaggcgt gccagccccg
    14701 gctcggagaa ggcggcgtgg tcgcttaacg ccaccagctc gctaatatcc tgcggcgtaa
    14761 tatcgccatc aagaacagtc atgacgccag cctgacgcgc cagcgtaaac gcctgttttg
    14821 cgccgtcatg ccagcgcaca tccgccaaca ccacatccca ctgcgaaaaa tcgatgtcgt
    14881 taagccagtc ggcgtcaggt aataaatccg ggctgggata attaacgata atccgctctc
    14941 ctttggcatc caccataatc gctgactgcg acgacatggc ctgcgtgtag cggcgggtat
    15001 agcgggtatt tacccccagg gattccagtt ccgccagcag gctgtttccg gtgtcgtcat
    15061 cgcccacacg gccaataaag tccacctgcg cgcccaattt cgccgcagcc acggcagcgg
    15121 tcgccgcagg cccgccgccc acttccgtat agcgcttcgc cacatatttg cccccttctg
    15181 ttggtaatcc ttccacgtaa tagatgcgat ccatcacggt aatacctaca caagcaatac
    15241 gaaccatggt cattcctcaa gcattttcga tgtgctcatt ttaatttcac gaaatgttta
    15301 aaaagtgacg gctgtcaatt ttttgaccat aaattacaaa tacgatcaca aacagacaga
    15361 aaaaggctca ttaatgacaa aaaatgacac caccgtgttc aggagaacga tatggcagtt
    15421 atagcattta tcgggttggg acagatgggc tcccctatgg cgagcaatct gctaaagcag
    15481 ggccatcaac tcagcgtctt cgatattaat cccgacgccg tacagcgtct ggtagacaaa
    15541 ggcgcgcaac ctgcaagcag cccggctcag acaaccatcg gcgctgaatt tgttatcacc
    15601 atgctcccga acggcgatct ggttcgttcc gttttgtttg gcgagcaagg cgtttgtgaa
    15661 actctttccc gtgaagcgct ggtcattgat atgtccacta ttcatccgtt gcaaaccgat
    15721 aagctgattg ccgacatgca gagcaaaggg ttcagcatga tggatgtgcc ggtaggccgg
    15781 acatccgaca acgcgattac cggcacattg ttgttgctgg caggcggtac gacggagcaa
    15841 gtagagcgcg ctacccctgt tctgatggcg atgggtaatg agctggtcaa caccggcggc
    15901 ccgggaatgg gtattcgcgt aaaactgatc aacaactaca tgagtattgc gctaaatgcg
    15961 ctctccgccg aagccgccgt gctgtgtgaa gcgctggggc tttccttcga cgtggcttta
    16021 aaagtgatga gcggcactgc cgcaggcaaa gggcatttca ccaccacctg gccgaataaa
    16081 gtgatgaaag gggatctgtc tcccgccttc atgatcgatc tggcgcacaa agatcttggc
    16141 atcgcgttgg atgtcgccaa tcaactgcac gtaccgatgc cgctcggcgc cgcctcccgt
    16201 gaagtttata acctggcgcg ggccgcaggc cgcggtcggg aagactggag cgccatcctg
    16261 gaacaggtgc gcatcagcgc cgggctgact gccaacgtaa aaaagtaacg actgtataaa
    16321 ggaaaattga atgaacaact acaccatcaa agacattacg cgagcgtccg gcgggtttgc
    16381 catgctggct gtcgatcagc gcgaggcgat gcgtttaatg tttgctgctg ctggtgcgaa
    16441 aacacccgtt gccgatagcg tgctgacgga tttcaaagtg aatgcggcga aaattctttc
    16501 cccgtatgcc tctgccgttc tgctggatca gcagttctgt tatcgccagg ccgtagaaca
    16561 aaacgcggtc gctaaaagct gcgccatgat cgtcgcggcg gatgatttca tcccaggcaa
    16621 cggtattccc gttgataacg tggtcattga taaaaaaatt aatgcgcagg cggtaaaacg
    16681 ggatggcgcg aaagccttaa aactgttggt gctgtggcgc agcgatgaag acgcgcagca
    16741 gcgtctggat atggttaaag aattcaatga attatgtcac tccaatggtt tgctgagcat
    16801 tatcgaaccg gttgtacgtc cgccgcgctg cggcgacaag ttcgatcgcg agcaggcgat
    16861 tatcgatgcg gccaaagagc tgggcgacag cggcgccgat ctttacaaag ttgaaatgcc
    16921 gctctacggc aaaggcgcgc gttccgatct tcttaccgcc tcacaacgcc tgaatgggca
    16981 tatcaatatg ccgtgggtca tcctctcttc cggtgtggac gaaaaactgt tccctcgcgc
    17041 agtcagggtc gccatggaag ctggcgcatc cgggttcctg gcgggacgcg cggtctggtc
    17101 atcagtgatt ggtttaccgg ataccgagct gatgctacgt gatgtttccg cgcctaaatt
    17161 gcaacgtctg ggcgagatcg tcgatgaaat gatggcaaaa cgtcgttaat acgaggatga
    17221 aagaatgaaa tggtttaaca cgttgagcca caaccgctgg ctggagcagg aaaccgaccg
    17281 catctttaat ttcggtaaaa acgccgcggt gccgacaggc ttcggctggc tgggaaataa
    17341 agggcaaatc aaagaagaga tgggcaccca tctttggatc acggcgcgta tgctgcacgt
    17401 ttattccgtg gcggcgtcga tgggccgacc gggcgcttat gatctggtcg atcacggcat
    17461 caaagccctg aacggcgcgc tgcgcgataa aaaatacggc ggctggtatg cctgcgttaa
    17521 cgatcagggc gtggtggatg cctctaaaca gggttatcaa cacttcttcg ccttgctggg
    17581 tgcggccagc gccgtcacga ccgggcaccc tgaagccaga aaattgctgg attacaccat
    17641 agaagtgatt gagaaatact tctggagtga agaagagcag atgtgccttg agtcctggga
    17701 cgaagccttt agccagacgg aagattaccg tggcggtaac gccaatatgc acgccgtcga
    17761 agcgttcctg attgtttatg acgttaccca tgacaaaaaa tggctggatc gcgctatcag
    17821 aatcgcatca gtcattattc atgatgtagc cagaaataat cattaccgtg ttaatgaaca
    17881 tttcgattca cagtggaacc ctatccgcga ctacaacaaa gataatcctg cccaccgttt
    17941 ccgcgcctac ggcggtacgc caggtcactg gattgagtgg ggccgtctga tgctccatct
    18001 ccatgctgcg ctggaggccc gcttcgaaac gccccccgcc tggctgctgg aggatgcgaa
    18061 aggtctgttc catgccacta tccgcgacgc ctgggcgcca gatggcgcag acggttttgt
    18121 ctactcagtc gactgggacg gtaaacctat cgtacgtgaa cgcgtgcgct ggccgattgt
    18181 ggaagcgatg ggtacggcct acgccctcta caccctgacg ggcgatagcc agtatgaaga
    18241 gtggtatcag aaatggtggg actactgcat taagtacctg atggactatg aaaatggttc
    18301 ctggtggcaa gagctggacg ccgataacaa agtgaccacc aaagtgtggg acggcaagta
    18361 agatatttac catctgctgc actgcctggt cattcctcgt ctgccactgg cgccgggcct
    18421 ggctccggcg gtcgcggcgg gtctcctgga tatcaacgcg aaataggtca tgaggatggc
    18481 agccatgcac agcggtggaa aaactattca gcttaatgcg ggccattacc aggcgaaaat
    18541 cgtcacggtt ggcgcaggtc tggcggaact gactcatcat ggacgtcatg tggtcatccc
    18601 gcataaaccg gaagaaatac ccatggcgca tctggggaag gtattgattc cctggccaaa
    18661 tcgcgtgaca aatggctgct actcctataa cggcaaagtt ttccagcttg ccgttaacga
    18721 cccggtttcg cagaccgcca ttcacggtct gttagcctgg cgagactggc agattaatta
    18781 tcagtcggcg acggaagcgt cgctaacgat ttttctgccg ccctcttacg gctatccctt
    18841 tgcgttgata tcggaagtga tttatcggtt agatgccgcc agtgggctgc acgtattgat
    18901 tcgtacgcaa aacattggcg atgaatcagc cccttatggc gcgggcgcac atccttattt
    18961 gacttgtaat ctgcaaagca tcgatagctg tgtattaaca ctgcctgcaa gcgaagaatt
    19021 gcccgcaggc aggaattttt ccgcatcatg cctgctcggc gaaacgcgcc ttgatcatgc
    19081 ggttaagacc gcgactgccc cggcggagtg ggaggtcaga cttaccagcc caacgcagaa
    19141 catgtctaca tttttacgca gcaagcaacc ctggctacag atctataccg gcgaaaaact
    19201 cagccgaaag gtctcgcggt agagcctatg agctgcccgc ccgatgcatt taattccggg
    19261 atcgcactga ttcatcttgc cccaaaagcg atccatcaac tgcatttttc catcggctgc
    19321 gactagccca aatggattac cgaattaccc tacattcacg gagattacaa tgaattctct
    19381 accacaacgg tcaaccgatt ttgaactgac aacatcacag gatggttttg cgcttagctg
    19441 gcaacagcgc ctgattttac gccacagcgc cgaaaacccc tgtctgtgga ttggcgcggg
    19501 cgttgccgac attgacatgt ttcgcggcaa cttcagcatc aaagacaaac ttaacgagaa
    19561 gattgcatta acggaggcca ccgtcagcga gctacccgac ggctggctgg tacaattcag
    19621 ccgtggcgca acaattagcg ccacccttcg catctccgcc gatgaggcgg gacgcctgac
    19681 gttggatctg caaaacgacg acctgcacca taaccgtatc tggttacgcc tcgcagctaa
    19741 tccagacgac catatctacg gctgcggcga acagttctct tatttcgatt tgcgcggcaa
    19801 gccgttcccg ctgtggacca gcgaacaggg cgttggccgt aataaaacca gctatgtcac
    19861 ctggcaggca gactgtaaag agaacgccgg cggcgactat tactggacct tcttcccgca
    19921 accgaccttt gtcagcacgc agaagtatta ctgccacgtc gataatagct gctatatgaa
    19981 tttcgacttc agcgcgccgg agtatcacga actggcgctg tgggaagata aaactacgct
    20041 gcgttttgag tgtgccgaca cctacatcgc cctgctggaa aaactgactg cgctgttagg
    20101 tcgccagccg gagctgccgg actgggttta cgacggcgtc acgctcggca ttcagggcgg
    20161 tacggaagtt tgtcagcaaa aactggatac catgcgcaac gcaggcgtaa aagtgaacgg
    20221 tatttgggcg caggactggt ccggtatccg catgacctcc tttggcaagc gcgtgatgtg
    20281 gaactggaag tggaatagcg acaactatcc acagctggat agccggatca aacagtggaa
    20341 agaagaaggc gtccagttcc tctcttatat caacccatac gtcgccagtg ataaagacct
    20401 ctgcgctgag gcggcgagac acggctatct ggcgaaagac gccacgggcg gcgactatct
    20461 ggtcgagttt ggcgaattct atggcggcgt ggtcgatctg actaatcctg aagcttacga
    20521 ctggttcaaa gatgtcatca aaaagaacat gatcgcgctc ggctgcagcg gctggatggc
    20581 ggatttcggc gaatatctgc cgaccgacac gtatctgcac aacggcgtca gcgcagagat
    20641 catgcataac gcctggcccg cactgtgggc gaagtgtaac tacgaagcgc tacaggagac
    20701 cggcaagctc ggcgagatcc tgttctttat gcgtgcgggt tacaccggca gtcagaaata
    20761 ttccaccatg atgtgggcag gcgaccagaa cgttgactgg agtcttgatg atggtctggc
    20821 ctctgtcgtg cctgctgcat tgtcgctggc gatgaccggc catggtctgc atcacagcga
    20881 tatcggcggc tacaccaccc tgtttgacat gaagcgcagc aaagagttgc tgctgcgctg
    20941 gtgcgatttc agcgccttta cgccgatgat gcgcacccat gaaggcaacc gccccggcaa
    21001 taactggcag ttcgacggcg acgcggaaac tattgcccac tttgcccgca tgaccaccgt
    21061 ctttaccacg ctgaaaccgt atctcaagca ggcggtggcg caaaacgcgg ctaccggtct
    21121 gccggtcatg cgtccgctat tcctgcacta cgagaacgat gccgctacct acaccctgaa
    21181 atatcaatat ctgctcggtc aggatctgct ggtcgcgccg gttcacgagc aggggcgttg
    21241 cgattggacg ctgtacctgc cggaagatca ctgggtgaat atctggaccg gcgaagctca
    21301 ccacggcggt gaaattaccg tggatgcgcc gattggcaag ccgccggtct tctatcgcgc
    21361 gaagagcgag tgggctttac tttttgcttc tttacggaat atctaatacg gctcgcccgc
    21421 agggaaacct gcgggcagat ggagaagaat aatgagtcaa acatcatcga atccggcaac
    21481 catacgcttg ccgtttaaag aaaaacttgc ctatggactg ggggatttag gttccaatat
    21541 cctgttagat atcgggaccc tctatttact caaattttat accgatgtgc tgggtttacc
    21601 agggacttac ggcgggatca ttttcctgat cgccaaattt tttaccgcat ttaccgatat
    21661 gggtaccggc attatgctcg actcgcggcg taaaattggt ccgaagggca aattccgccc
    21721 gttcgtgctt tacgcggcat ttccggtaac gctactggcg attgctaact ttgtcggcac
    21781 accgtttgag gtgacgggaa aaaccgtcgt cgcaacgatg ctgtttatgc tgtatgggct
    21841 ggttttcagc atgatgaact gctcgtatgg cgcgatggtg cccgcgatta ccaagaaccc
    21901 ggatgaacgc gcctcgcttg ccgcgtggcg tcagggcggc gccactctcg gcctgctgct
    21961 gtgtaccgtt ggctttgtgc cggtcatgaa cctgatcgaa ggcaatgccc aactcagcta
    22021 tattttcgcc gccacgctat tttcattgtt tggcctgcta tttatgtggc tgtgctacgc
    22081 cggcgttaaa gagcgctacg ttgaagtgaa acctgtcgat agcgcgcaaa agcctggatt
    22141 attgcagtcg ttccgcgcca tcgccggtaa ccgcccgctg tttattctgt gtatcgccaa
    22201 cctttgtact ctcggcgcct tcaacgtcaa actggcgatt caagtttatt acacacagta
    22261 cgttcttaac gacccgatcc tcctctcctg gatgggcttc tttagcatgg gctgtatttt
    22321 tatcggcgtc tttttgatgc ccggcgcagt caggcgtttt ggcaagaaga aagtctatat
    22381 cggcgggctg ttaatatggg tggcgggcga tctgctcaac tacttctttg gcggcggctc
    22441 ggtcagtttt gtcgccttct cctgcctggc gttcttcggt tccgccttcg tcaacagcct
    22501 gaactgggcg ctggtttccg acacggtgga gtacggtgaa tggcgcaccg gcgtccgctc
    22561 ggaagggacg gtttacaccg gcttcacgtt cttccgtaag gtctcccagg cgctggcagg
    22621 gttcttcccc ggctggatgc tgacgcaaat cggttatatc ccgaatgtgg tgcaatcggc
    22681 aggcaccgtc gaaggcctac gccagttgat ctttatatat ccttgcgtgc tggcggtcat
    22741 caccattatt gcgatgggct gtttctacaa cctcaacgag aagatgtacg tgcgaattgt
    22801 ggaagagatt gaggcccgga aacatacggt ttaacaacaa taaaatataa cgccctgcgg
    22861 ggcgttttga gaggcgatta tgtctaatca tgatccgcta acgctaaagt tgagcctgcg
    22921 ggaaaaatgc gcctatggcg tgggcgattt cggctcaaat ctgatgctgt gtatcggtac
    22981 gctgtatcta ctgaagtttt ataccgatga actcgggatg cctgcatatt acggtggaat
    23041 tatctttctg gtggcgaaat tcttcactgc ttttaccgat atgctcaccg gcgtattgct
    23101 ggattcacgc cgtaatattg gcgcaaaagg aaagtttcgg ccttttattc tgtatgcgtc
    23161 atttccggtg gctctggttg ctactgcgca attctttgcc actcacttta ctttacccgt
    23221 taaaacagcc ttcgcgacgg tgctgtttat gttgttcggt ctgttctaca gcctgatgaa
    23281 ctgctcatac ggcgcgatgg tacccgctat taccaaaaat ccgcatgagc gggcccagct
    23341 cgccgcatgg cgacaaggcg gcgctaccat tggccttctt ctttgtaccg taggttttat
    23401 gcccattcag gcgctgttta cccgttcccc ttcgctgggt tatctggttg cagcagtcat
    23461 tttttcggtc tgcgggctgt tcagcatgtg gtggtgcttt agcggggtga aagaacggta
    23521 tatcgaaacc gtacctgaca cgcataaacc cagcatattg aagtccttct gcgcgatttt
    23581 tcgtaatccg ccgctgctgg tgctctgcgt tgccaatttg tgcacgctgg ctgcctttaa
    23641 tattaagctg gccattcagg tttattacac tcagtacgtg ctgaacgata ttcatttgtt
    23701 gtcatggatg ggttttttca gcatgggctg tatcctgatt ggcgtcttat tagtacctga
    23761 tgcggtaaaa cgcttcggga aaaaacaggt ttatcttggt ggtctgatac tgtgggccgt
    23821 tggcgatatc ctgaatttta tctggggcgg aacgtcattc ctgtttgtta ttttctcttg
    23881 tattgccttc ttcggtaccg ctttcgtcaa cagcctgaac tgggcgctgg ttccggatac
    23941 ggttgactac ggcgaatgga aaacgggtat tcgcgctgaa ggctcggtgt atacgggtta
    24001 taccttttcc cgcaaaattt ccgctgcgct tgctggcttt ttgccaggta ttatgctgac
    24061 gcaaatcggt tatatcccca acatagctca aagtgacacc acgttgcttg gtttgcgtca
    24121 gctcattttt ttatggcctt gtggtcttgc cattatcgca gcactaacga tgggcttttt
    24181 ttataagctc aa
//
LOCUS       DAJVSD010000045        23145 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.045, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000045 DAJVSD010000000
VERSION     DAJVSD010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 23145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23145
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.045"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            157..1833
                     /locus_tag="OQP62_001490"
     CDS             157..1833
                     /locus_tag="OQP62_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kef family K(+) transporter"
                     /protein_id="HCS1721075.1"
                     /translation="MHHATPLITTIVGGLVLAFILGMIANKLRISPLVGYLLAGVLAG
                     PFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAVAQIAVATLL
                     GMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLLDSQRGQIAIGWLIVEDLV
                     MVLTLVLLPAVAGMVEKGDVGIASLAVDMGITIGKVVAFIAIMMLVGRRLVPWIMARS
                     AATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLP
                     LRDAFAVLFFVSVGMLFDPLVLIQQPLAVLATLAIIVFGKSIAAFFLVRMFGHSPRTA
                     LTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLEKYLA
                     KTETLEEQTLEEAIEEEKQIPVDICNHALLVGFGRVGSLLGEKLLAAGIPLVVIETSR
                     TRVDELRERGIRAVLGNAANEEIMNLAHLDCARWLLLTIPNGYEAGEIVASAREKSPD
                     IEIIARAHYDDEVKYITERGANQVVMGEREIARAMLELLETPPAGEVVAS"
     gene            complement(1882..3186)
                     /gene="gsk"
                     /locus_tag="OQP62_001491"
     CDS             complement(1882..3186)
                     /gene="gsk"
                     /locus_tag="OQP62_001491"
                     /EC_number="2.7.1.73"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inosine/guanosine kinase"
                     /protein_id="HCS1721076.1"
                     /translation="MKFPGKRKSKHYFPVNARDPLLQQIQPEQETNASWVVGIDQTLV
                     DIEAKVDDDFITRYGLSAGHSLVIEDELAEKLYQELTRENLITHQFAGGTIGNTMHNY
                     SVLADDRSVLLGVMCSNIEIGSYAYRYLCNTSSRTDLNYLQAVDGPIGRCFTLIGESG
                     ERTFAISPGHMNQLRAESIPEAVIAGASALVLTSYLVRCKPGEPMPDATMKAIEYAKK
                     HNVPVVMTLGTKFVIADNPQWWQAFLKENVSILAMNEEEAEALTGENDPLLAADKALD
                     WVDLVLCTAGPIGLYMAGFTEEEAKRKTQHPLLPGAIAEFNQYEFSRAMRHKDCTNPL
                     RVYSHIAPYMGGPEKIMNTNGAGDGALAALLHDITANSYHRSNVPNSSKHKFTWLTYS
                     SLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSLEESYWDR"
     gene            3339..4310
                     /gene="aes"
                     /locus_tag="OQP62_001492"
     CDS             3339..4310
                     /gene="aes"
                     /locus_tag="OQP62_001492"
                     /EC_number="3.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl esterase"
                     /protein_id="HCS1721077.1"
                     /translation="MKPENKIPVLTRLSDEMTAVVNFQQPGLPPWPADGDIETQRQYY
                     LLERSFWNADAPSMTTRTCAVSTPYGDVTTRLYSPQPTSQATLYYLHGGGFILGNLDT
                     HDRIMRLLARYTGCTVIGIDYSLSPQARYPQAIEETVAVCSYFSQHADEYSLNVEEIG
                     FAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLYGLQDSVSRRLFGGAWDGLTR
                     EDLDMYEKAYLRNDEDRESPWYCLFNNDLTRDVPPCFIASAEFDPLIDDSRLLHQTLQ
                     AHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMKTPR"
     gene            complement(4307..5269)
                     /gene="hemH"
                     /locus_tag="OQP62_001493"
     CDS             complement(4307..5269)
                     /gene="hemH"
                     /locus_tag="OQP62_001493"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HCS1721078.1"
                     /translation="MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTPRLL
                     WWPLLRGVILPLRSPRVAKLYQSIWMDGGSPLMVYSREQQQALAARLPDTPVALGMSY
                     GSPSLESAVDELLASDVDHIVVLPLYPQYSCSTVGAVWDELGRILARKRRIPGISFIR
                     DYADDGAYIDALAKSARESFARHGEPDLLLLSYHGIPQRYADEGDDYPQRCRDTTREL
                     VSALGLPPEKVMMTFQSRFGREPWLTPYTDETLKMLGEKGTGHIQVMCPGFAADCLET
                     LEEIAEQNREIFLEAGGKKYAYIQALNATPEHIDMILKLTAPYR"
     gene            complement(5499..6143)
                     /gene="adk"
                     /locus_tag="OQP62_001494"
     CDS             complement(5499..6143)
                     /gene="adk"
                     /locus_tag="OQP62_001494"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007706188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HCS1721079.1"
                     /translation="MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSE
                     LGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIV
                     VDYVLEFDVPDELIVDRIVGRRVHAASGRVYHVKFNPPKVEGKDDVTGEDLTTRKDDQ
                     EETVRKRLVEYHQMTAPLIGYYQKEAEAGNTKYAKVDGTQAVADVRAALEKILG"
     gene            complement(6559..8433)
                     /gene="htpG"
                     /locus_tag="OQP62_001495"
     CDS             complement(6559..8433)
                     /gene="htpG"
                     /locus_tag="OQP62_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003903109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HCS1721080.1"
                     /translation="MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAAD
                     KLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTIADNGVGMNRDEVIDHLGTIAKSGT
                     KSFLESMGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGDKPENGVFWESAGEG
                     EYTVADITKNDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDG
                     ETVISWEKINKAQALWTRNKSEIKDDEYNEFYKHIAHDFTDPLTWSHNRVEGKQEYTS
                     LLYIPSQAPWDLWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSNDLPLNV
                     SREILQDSTVTRNLRSALTKRVLQMLEKLAKDDAEKYQTFWKQFGLVLKEGPAEDHAN
                     QEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKNSPHLELL
                     RKKGIEVLLLSDRIDEWMMNYLTEFDGKAFQSVAKADESIEKLADEVDENAKEAEKAL
                     EPFVERVKTLLGDRVKEVRLTHRLTDTPAIVTTDADEMSTQMAKLFAAAGQSVPEVKY
                     IFELNPDHVLVKRTADTKDEAQFKEWVELLLDQALFAERGTLEDPNQFIRRMNQLLVS
                     "
     gene            complement(8544..9149)
                     /gene="recR"
                     /locus_tag="OQP62_001496"
     CDS             complement(8544..9149)
                     /gene="recR"
                     /locus_tag="OQP62_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HCS1721081.1"
                     /translation="MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLA
                     QALTRAMSEIGHCADCRTFTEQDVCNICSNPRRQENGQICVVESPADIYAIEQTGQFS
                     GRYFVLMGHLSPLDGIGPDDIGLDRLEQRLASEKISELILATNPTVEGEATANYIAEL
                     CAEAGVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIIF"
     gene            complement(9149..9478)
                     /locus_tag="OQP62_001497"
     CDS             complement(9149..9478)
                     /locus_tag="OQP62_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001364632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HCS1721082.1"
                     /translation="MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKV
                     TINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLP
                     PGFKMPF"
     gene            complement(9524..11452)
                     /gene="dnaX"
                     /locus_tag="OQP62_001498"
     CDS             complement(9524..11452)
                     /gene="dnaX"
                     /locus_tag="OQP62_001498"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HCS1721083.1"
                     /translation="MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFS
                     GTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVE
                     DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQ
                     KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDAL
                     SLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGI
                     EWEALLVEMLSLLHRIAMVQLSPAALGSDMAAIEQRMRELARTVPPGDLQLYYQTLLI
                     GRKELPWAPDRRMGVEMTLLRALAFHPRMPLPEPETPRQSFAPVAPTAVMTPPQVQQP
                     SAPAPQTSPAPLPASTSQVLAARNQLQRAQGVTKTKKSEPAAASRARPVNNSALERLA
                     SVSERVQARPAPSALETTPVKKEAYRWKATTPVVQTKEVVATPKALKKALEHEKTPEL
                     AAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEQNGNAVCLHLRSTQRHLNSSG
                     AQQKLAQALSDLTGTTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQ
                     TLRRFFDAELDEESIRPI"
     misc_feature    complement(10127..10191)
                     /gene="dnaX"
                     /locus_tag="OQP62_001498"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00382"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="DnaX frameshifting element; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00382"
     gene            complement(11566..12117)
                     /gene="apt"
                     /locus_tag="OQP62_001499"
     CDS             complement(11566..12117)
                     /gene="apt"
                     /locus_tag="OQP62_001499"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HCS1721084.1"
                     /translation="MTATAQQLEFLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALS
                     IELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIAETYEL
                     EYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFD
                     LGGEQRLEKQGITCYSLMPFPGH"
     gene            complement(12270..12647)
                     /locus_tag="OQP62_001500"
     CDS             complement(12270..12647)
                     /locus_tag="OQP62_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF454 family protein"
                     /protein_id="HCS1721085.1"
                     /translation="MQRTILIIIGWLAVVLGTLGVVLPLLPTTPFILLAAWCFARSSP
                     RFHAWLLYRSWFGGYLRHWQRYRAMPPGAKPRAIALILLTFGISLWLVNMMWVRVLLL
                     VILACLLIFMWRIPVIDEKQQKR"
     gene            12716..13243
                     /gene="priC"
                     /locus_tag="OQP62_001501"
                     /pseudo
     CDS             12716..13243
                     /gene="priC"
                     /locus_tag="OQP62_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001519637.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N''"
     gene            13257..13424
                     /gene="rsmS"
                     /locus_tag="OQP62_001502"
     CDS             13257..13424
                     /gene="rsmS"
                     /locus_tag="OQP62_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pleiotropic regulatory protein RsmS"
                     /protein_id="HCS1721086.1"
                     /translation="MSLENAPDEVKLAVDLIVLLEENRLPARTVLRALEIVMRDYENK
                     LKSTEDDSQTE"
     gene            13494..14417
                     /locus_tag="OQP62_001503"
     CDS             13494..14417
                     /locus_tag="OQP62_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HCS1721087.1"
                     /translation="MERLPTTPHDAVFRQMLMQKEVARDFLAIHLPEDFLAICDLDSL
                     KLESGSFVEDNLRSRYSDILYSLHTQHGPGYVYALIEHQSKSDRLMAFRLMRYAIAAM
                     QRHLDAGHDTLPLVVPILFYHGPESPWPYSLNWHNMFVKPDMAKALYSHEFALVDLTI
                     MPDNQLLQHRRIAMLELLQKHIRQRDLSELLDPLITLLTQDHLTDAQLSVLINYMLKA
                     GNAAEPGALIRQLAQGAPQYKEQLMTIAEWLEEKGRTEGLRKGLEQGLAQGREAEARA
                     IARKMLANGLEPGLIASVTGITPEELSTLSH"
     gene            complement(14459..17821)
                     /gene="mscK"
                     /locus_tag="OQP62_001504"
     CDS             complement(14459..17821)
                     /gene="mscK"
                     /locus_tag="OQP62_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HCS1721088.1"
                     /translation="MTMLQLYKRSQHFVFITISVLIILLSCQSLAFARGQTNGDLPSK
                     ADVQNQLDTLNKQKDLSAQDKLVQQDLIDTLATLEKIERVKEETVQLRQKVAQAPEKM
                     RQATAALNALSDVDNDDEMRKTLSALSLRQLELRVAQVLDDLQNSQNDLAAYNSQLVS
                     LQTQPERVQNAMYTASQQIQQIRNRLDGNNVGEAALRPSQQVLLQAQQALLNAQIDQQ
                     RKSLEGNTVLQDTLQKQRDYVTANSNRLEHQLQLLQEAVNSKRLTLTEKTAQEAISPD
                     ETARIQANPLVKQELDINHQLSQRLIVATENGNMLMQQNIKVKNWLDRALQSERNIKE
                     QIAVLKGSLLLSRILYQQQQTLPSADELEDMTNRIADLRLEQFEINQQRDALFQSDAF
                     VDKLEEGHTSEVNDEVHDALLQVVEMRRELLDQLNKQLGNQLMMAINLQVNQQQLMSV
                     SKNLKAILTQQIFWVNSNRPMDWDWLKAFPQTLKEQFSAMKITVNWQKAWPAVFIAFL
                     AGLPLLLIAGLIRWRLKWLKAYQQKLAAAVGSLRNDSQLNTPKAILIDLIRALPVCLI
                     ILAIGLILLTMQLNISDLLWAFSKKLAMFWLVFGLCWKVLEKEGVAIRHFGMPAQLTS
                     HWRRQIVRISLALLPLHFWSVVAELSPLNLMDDVLGQAVIFLNLLVITLLVWPLCRES
                     WRDKESHGIRLVTVTILSIIPVALMVLTATGYFYTTLRLAGRWIETVYLVIIWNLLYQ
                     TVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPQEEPTIALEQINQQTLRITMLLM
                     LALFGVMFWAIWSDLITVFSYLDSITLWHYNGSEAGAAVVKSVTMGSLLFAIIAAMVA
                     WALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYVIIAVGAMTVFGSLGVSWDKLQW
                     LAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGTYSGTVSKIRIRATTIT
                     DFDRKEVIIPNKAFVTERLINWSLSDTTTRLVIRLGVAYGSDLEKVKRVLLQAAMEHP
                     KVMHDPEPAVFFTTFGASTLDHELRLYVRELRDRSHTVDELNRAIDRLCRENDINIAF
                     NQLEVHLHNAKGDEVTEVKRDLNGGDLAPAAS"
     gene            complement(17940..18593)
                     /gene="acrR"
                     /locus_tag="OQP62_001505"
     CDS             complement(17940..18593)
                     /gene="acrR"
                     /locus_tag="OQP62_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter transcriptional
                     repressor AcrR"
                     /protein_id="HCS1721089.1"
                     /translation="MARKTKQQALETRQHILDVALRLFSQQGVSATSLAEIANAAGVT
                     RGAIYWHFKNKSDLFSEIWELSESNIGELEIEYQAKFPDDPLSVLREILVHILEATVT
                     EERRRLLMEIIFHKCEFVGEMVVVQQAQRSLCLESYDRIEQTLKHCINAKMLPENLLT
                     RRAAILMRSFISGLMENWLFAPQSFDLKKEARAYVTILLEMYQLCPTLRASTVNGSP"
     gene            18735..19928
                     /gene="acrA"
                     /locus_tag="OQP62_001506"
     CDS             18735..19928
                     /gene="acrA"
                     /locus_tag="OQP62_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit AcrA"
                     /protein_id="HCS1721090.1"
                     /translation="MNKNRGLTPLAVVLMLSGSLALTGCDDKQDQQGGQQMPEVGVVT
                     LKTEPLQITTELPGRTVAYRIAEVRPQVSGIILKRNFVEGSDIEAGVSLYQIDPATYQ
                     ATYDSAKGDLAKAQAAANIAELTVKRYQKLLGTQYISKQEYDQALADAQQATAAVVAA
                     KAAVETARINLAYTKVTSPISGRIGKSSVTEGALVQNGQASALATVQQLDPIYVDVTQ
                     SSNDFLRLKQELANGSLKQENGKAKVDLVTSDGIKFPQSGTLEFSDVTVDQSTGSITL
                     RAIFPNPDHTLLPGMFVRARLQEGTKPTALLVPQQGVTRTPRGDATVLVVGADNKVET
                     RQIVASQAIGDKWLVTDGLKAGDRVVVSGLQKVRPGAQVKVQEITADNKQQAASGDQP
                     AQPRS"
     gene            19951..23100
                     /locus_tag="OQP62_001507"
     CDS             19951..23100
                     /locus_tag="OQP62_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HCS1721091.1"
                     /translation="MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVT
                     ISATYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADI
                     AQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAA
                     NMKDPISRTSGVGDVQLFGSQYAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQ
                     LGGTPPVKGQQLNASIIAQTRLTSTDEFGKILLKVNQDGSQVRLRDVAKIELGGENYD
                     VIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVK
                     ISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLS
                     AVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEG
                     KKGFFGWFNRLFDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPD
                     EDQGVFLTMVQLPAGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNT
                     GIAFVSLKDWADRPGEKNKVEAITQRATAAFSQIKDAMVFAFNLPAIVELGTATGFDF
                     ELIDQAGLGHEKLTQARNQLFGEVAKYPDLLVGVRPNGLEDTPQFKIDIDQEKAQALG
                     VSISDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDINDWYVRGSDGQM
                     VPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMAMMEELASKLPSGIG
                     YDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALL
                     AATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLVEAMLEAVRMRL
                     RPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATVLAIFFVPVFFVVVR
                     RRFSRKSEDIEHSHSTEHR"
BASE COUNT         5206 a         6369 c         6177 g         5393 t
ORIGIN      
        1 tgtccatccc atgcttatca cttttacgtt ccatgctctt tttgccttca gatcgtatct
       61 ttttataaaa cacaaccatt ttttataaac atcctgattg aaattgtcat aaactattac
      121 ccggagtttt ggagtccagc aaccaaagga gacggaatgc atcacgctac cccgcttatc
      181 accaccattg tcggcggcct tgtgctcgct tttattctcg gcatgattgc caacaaattg
      241 cgtatttctc cactggtggg atatctgtta gcgggcgttc tggcgggacc ttttacccca
      301 ggttttgttg cggataccaa actggcgccg gagctggcgg agctcggcgt gattctattg
      361 atgttcggcg tcgggctgca tttttcgctg aaggatttga tggcggtaaa gtctatcgcc
      421 attcccggcg ctgtcgctca gatagcggtg gcgacgctgc tgggtatggc gctttccgcc
      481 gtgctgggat ggtcattaat gaccggcatc gtttttgggc tctgtctgtc taccgccagt
      541 accgtcgtcc tgctgcgcgc gcttgaggag cgacaactcc ttgatagcca gcgcgggcaa
      601 atcgccatcg gctggctgat tgtcgaagat ctggtgatgg tgctgacgct ggtcttgctg
      661 cccgccgttg ccggcatggt ggaaaaaggc gatgtcggca tagcctcgct ggcagtcgat
      721 atggggataa ccattggtaa agtggtggcg tttatcgcca tcatgatgct ggtcggacgc
      781 cgcctggtgc cgtggattat ggcccgcagc gccgccaccg gctcgcgcga gttatttacc
      841 ctttccgtac tggcgctggc gttaggcatt gcgtttggcg cggtagaact gtttgacgtc
      901 tcttttgcgc tgggcgcgtt cttcgctgga atggtgctta atgagtcgga actgagtcac
      961 cgggcggcgc acgatacgtt gccactgcgc gacgcctttg ccgtcctgtt ttttgtttcc
     1021 gtcggcatgt tgttcgatcc gctagtcttg attcaacagc cgctggcggt gttggcgacg
     1081 cttgccatta tcgtctttgg taaatcgatc gctgcgtttt tcctggtgcg tatgttcggc
     1141 cactcgccgc gaaccgcgct gaccattgcc gccagcctgg cgcaaatcgg tgagttcgcc
     1201 tttattctcg ccggactcgg tatggcgctc aatctgctgc cgcaggcggg acagaacctg
     1261 gtgctggcag gcgctatttt gtcgattatg cttaatcccg tactgtttac cctgctggag
     1321 aagtatctgg cgaaaaccga aacgctggaa gagcaaactc tggaagaggc tatcgaagaa
     1381 gagaagcaaa ttccggtgga tatctgtaat catgccctgc tggtgggttt tggccgcgta
     1441 ggcagtctgc tgggagaaaa attactggcg gcggggattc cgctggtggt tatcgaaacg
     1501 tcccgtaccc gcgtggatga actgcgcgaa cgcgggattc gcgccgtact gggcaacgcc
     1561 gctaacgaag aaatcatgaa tctggcgcat ctggactgcg cccgctggct gttattgacc
     1621 atccccaacg gttacgaagc cggtgagatt gtcgcctcag cgcgagaaaa aagccctgat
     1681 atcgagataa tcgcccgcgc gcactatgat gatgaagtga aatatattac cgagcgggga
     1741 gccaatcagg tagtgatggg cgagcgagaa attgcccggg cgatgctgga actgcttgaa
     1801 acgccgcccg cgggtgaagt cgtcgccagt taagggtttg ccggacggcc cgatgcgcgc
     1861 agcgccatcg ggcaagccag attagcgatc ccagtacgac tcttccaggc tgtcctcacg
     1921 ttccggcagc ccgcgtgtca gacgcggaga atgctggttc agtacctgat aactgacacg
     1981 gttagcatat ttacacacct gcgccagcga cgaataggtc agccaggtga atttgtgctt
     2041 actggagttc ggtacgttgc tacgatggta actgttcgcc gtaatatcgt gcagcagcgc
     2101 cgccagcgcg ccatcgcccg cgccgttggt gttcatgatt ttttccggcc cgcccatata
     2161 cggcgcaata tgcgaataaa cgcgcagcgg attagtacaa tctttatggc gcattgcccg
     2221 gctaaattca tactggttaa attcagcaat agcccccggc agcagaggat gctgggtttt
     2281 acgttttgct tcctcttcgg tgaagcctgc catatataac cctatcggcc cggcggtgca
     2341 taacaccagg tcgacccagt ccagcgcctt atccgccgcc agcagcgggt cgttttcgcc
     2401 ggtcagcgct tccgcttctt cttcattcat tgccagaatc gagacattct ctttgagaaa
     2461 cgcctgccac cactgcggat tatcggcgat cacaaatttg gtgcccagcg tcatgacaac
     2521 cggcacgtta tgctttttcg cgtattcgat cgctttcatc gtcgcgtcag gcatcggttc
     2581 gccaggctta cagcgcacca gatatgaggt caacaccagc gcggaagcgc cagcgatcac
     2641 cgcttccgga atactttccg cccgtagctg attcatatgg ccggggctga tagcgaaggt
     2701 acgctcgccg gattcgccaa tcagcgtgaa acagcggcca atcggaccat ctaccgcttg
     2761 cagataattc aggtcggtac ggctggaagt attacacagg tagcgataag cgtagctgcc
     2821 aatctcaatg ttgctgcaca tcacgcccag taacaccgaa cggtcatccg ccagtaccga
     2881 gtaattatgc atcgtattgc ctatggtgcc gccagcaaac tgatgggtga tcagattttc
     2941 ccgcgtcagt tcctgataca gcttctccgc caactcgtct tctatcacca gagaatgccc
     3001 ggcgcttaat ccatagcgtg taataaaatc gtcatccact ttcgcctcaa tatccaccaa
     3061 cgtctggtcg ataccgacga cccaggaggc gttggtttcc tgttctggct gaatttgttg
     3121 caacaacggg tcacgcgcat tgacgggaaa atagtgtttg gatttacgtt taccgggaaa
     3181 tttcatgatt gtgcttacgg atgaataacg gagcgctgca tggtagcaca ttccccctgc
     3241 tgcgcgcgac ggacgatggc gtttcaatat cggacgacga gatcgcagtt tctccagccg
     3301 cgttttttac aatggttcac tttcacaagg agcgttttat gaagccggaa aataaaattc
     3361 ccgtactcac ccgactgtct gacgaaatga cagccgtcgt aaacttccag caaccaggcc
     3421 ttcccccctg gcctgccgat ggcgatattg agacccagcg tcagtattat cttcttgagc
     3481 gcagtttctg gaatgccgac gcgccgtcca tgaccacccg cacctgcgcc gtctctacgc
     3541 cttatggcga tgtaacaacc cggctctact cgccgcagcc gaccagtcag gccaccttat
     3601 actatctgca cggcggcgga tttatcctcg gtaatctgga tacgcatgac cggataatgc
     3661 gtctgctggc gcgttatacc ggctgcaccg tgatcggtat tgattattcg ctgtcgccgc
     3721 aagcgcgtta tccgcaggcc attgaagaaa ccgtcgcggt atgcagctac ttctctcaac
     3781 atgccgatga atactcgctc aacgtggagg aaatcggttt cgccggagat tccgcaggcg
     3841 ccatgctggc gcttgccagc gcgctctggc tacgtgataa gcacattcgc tgcggtaacg
     3901 ttatcgcgat tctgttgtgg tatgggctgt atgggttgca agattcggta agccgccgtc
     3961 tgttcggcgg cgcgtgggac ggcctgacgc gtgaagatct ggacatgtac gaaaaggcct
     4021 atctgcgtaa cgatgaagat cgggaatcgc cctggtattg tctgtttaat aacgatctca
     4081 cgcgcgatgt gccgccctgc tttattgcca gcgcggagtt tgatccgctc attgatgaca
     4141 gccgcttgct gcaccagaca ttacaggcgc accagcagcc ctgcgaatac aaaatgtatc
     4201 ccggcacgct gcacgccttc ctgcactatt cgcgaatgat gacaatcgcc gacgatgcct
     4261 tgcaggacgg cgcacgcttc tttatggcga ggatgaagac gccgcgttaa cggtacggcg
     4321 ccgtgagttt cagtatcata tcaatatgtt ccggcgtcgc gttcagcgcc tgaatgtacg
     4381 catatttttt accgcccgct tcaaggaaaa tctcgcggtt ctgttccgct atctcttcca
     4441 gcgtctccag acaatccgcg gcaaaccccg gacacatgac ctgaatatgg ccagtcccct
     4501 tttcacccaa catttttagc gtttcatcgg tgtacggcgt cagccacggt tcacggccaa
     4561 agcgcgactg gaacgtcatc attacctttt ccggcggcag tcccaatgcg gaaaccagtt
     4621 cacgcgtggt atcgcgacag cgctgcgggt agtcatcgcc ttcatccgca taacgttgtg
     4681 gaatgccgtg ataggagagc agaagtaaat ccggctcgcc gtgtctggcg aacgactcac
     4741 gcgcgctttt cgccagcgca tcgatataag cgccgtcatc cgcgtaatcg cgaataaatg
     4801 agatcccggg aatacgacgt ttacgcgcca gtatccgccc cagttcgtcc cagactgcgc
     4861 ccaccgttga gcaagaatat tgcgggtaca acggcagcac gacgatatgg tcgacgtcgc
     4921 ttgctaacag ttcatcgaca gcgctttcca gcgagggcga gccgtagctc atccccagcg
     4981 cgacgggcgt gtctggcaac cgcgcggcca gcgcctgttg ctgttcgcgg ctatatacca
     5041 tgagcggcga accgccatcc atccagatag attgatagag tttcgcgacg cgcggcgaac
     5101 gcagcggtaa aataacgcca cgcagcagcg gccaccacag cagacgagga gtatccacca
     5161 cgcgtctgtc gcttaaaaat tgtttcaggt agcgctttac cgcttcagga gttggggcat
     5221 ctggcgtgcc aaggttagcc agcaggatac cggttttcgt ctgacgcatt gccgcctctt
     5281 atctattcaa attgttgata attgtagcgg aaaagcgata aagaagaact aattgctgcg
     5341 agaggtaaga cgagaatttg ccgaatggcg ctaacgatac cggtaggccg gataaggcgt
     5401 tcaggccgcc attcggcacc gattgcctga tggcgctacg cttatcaggc ctgcgggata
     5461 atggcaggcc tgataagcgg ttcactacgc gaaaaaaatt aaccgaggat tttttccagc
     5521 gctgcgcgca cgtcggcaac ggcctgcgta ccgtcaactt tagcgtattt ggtgttgccc
     5581 gcttccgctt ctttctggta gtagccaatc agcggcgcgg tcatctgatg atattccacc
     5641 agacgtttgc gaacggtctc ttcctgatcg tctttacggg tcgtcagatc ttcgccggtg
     5701 acgtcatctt tgccttccac tttcggcgga ttaaacttaa cgtggtaaac gcggccagag
     5761 gcggcgtgta cgcgacgacc cacaatacgg tcaacgatca gttcgtccgg tacgtcgaat
     5821 tccagcacgt aatccaccac aatacccgct tctttcatcg cgtcagcctg cgggatcgtg
     5881 cgcgggaaac cgtccagcag aaaaccgtta cggcagtctt cctgggcgat acgctcttta
     5941 accagcgcaa tcaccagttc atcggtcacc agtttaccgg cgtccatgat atctttcgcc
     6001 tgtttgccca actcggagcc tgatttcact gcggcgcgca gcatatcgcc agtggagatt
     6061 tgcggaatac catatttctc catgatgaac tgagcctgag ttcctttacc cgcgcccgga
     6121 gcgccaagca gaataatacg cattacgaaa atcccctcaa aggttgtcga tattttttaa
     6181 aaagcgctaa acgataccac catcacgcat ttcgctcaag gaagtcgcct gatgctgaaa
     6241 cggttaacga agagaaatcc agaaaagaga aggtattata aaaaatgccg gatggcgctg
     6301 gcgcttatcc ggcctacaaa cagtactcgt ccgtaggccg gataagatgc ttcgcgtcgc
     6361 catccggcag tcacaaaaca gtactcgccc gtaggccgga taagacgctt cgcgtcgcca
     6421 tccggcagtc acaaaacagt acccgtccgt aggccggata agatgcttcg cgtcgccatc
     6481 cggcagtcac aaaacagtac ccgcccgtag gtcgggtaag acgcttcgcg tcgctatccg
     6541 gcaatcagat gagcgttatc aggacaccag caactggttc atacggcgga taaactggtt
     6601 cggatcttcc agcgtaccgc gttcagcgaa cagcgcctga tccagcagca gctcgaccca
     6661 ctctttaaac tgcgcttcat ccttggtatc ggcagtgcgt ttgaccagca catgatccgg
     6721 gttgagctca aagatgtatt tcacttccgg cacggactga ccggccgcgg cgaacagttt
     6781 cgccatctgg gtgctcattt catccgcatc ggtggtgaca atcgccggcg tgtcggttaa
     6841 acggtgtgtc agacgcacct ctttcacgcg atcgcccagc agggttttga cacgctccac
     6901 gaacggctca agcgcctttt ccgcttcttt cgcgttttcg tcgacttcat ccgccagttt
     6961 ttcgatggac tcatcggctt tagcgaccga ctggaatgct ttaccgtcaa actcggtcag
     7021 gtagttcatc atccactcgt cgatgcgatc ggagagcagc agcacttcga tgcctttctt
     7081 acgcagcagc tccaggtgcg ggctgttttt cgccgccgca tagctgtctg cggtgatgta
     7141 gtagattttt tcctgccctt ctttcatccg ggagacgtaa tcttccagcg acacggtctg
     7201 ggcggaagag tcggtatggg tggaggcaaa gcgcaacagt ttagcgatcg cttcctggtt
     7261 ggcgtgatct tccgccgggc cttctttcaa caccagaccg aactgtttcc agaaggtttg
     7321 gtatttttcc gcgtcgtctt tcgccagttt ttccagcatt tgcagaacgc gtttggtcag
     7381 ggcgctgcgc agattacgcg ttaccgtgct gtcctgcagg atttcacggg agacattcaa
     7441 cggcaggtca ttagaatcaa tcaggccgcg cacgaaacgc agatagttcg gcatgaactg
     7501 ctcggcatcg tccataatga acacacgctg tacgtacagc ttcagaccat gtttgtgatc
     7561 gcggttccac agatcccacg gcgcctgcga cgggatatac agcaggctgg tgtactcctg
     7621 cttaccttcc acgcggttgt ggctccaggt cagcggatcg gtgaaatcat gcgcgatgtg
     7681 cttgtaaaac tcgttgtact cgtcgtcttt aatttccgac ttgttacggg tccacaacgc
     7741 ctgggccttg ttgattttct cccaggaaat cacggtttcg ccgtcttttt cttcccgttt
     7801 ttcaatctct accggcaatg cgatgtgatc ggaatattta ctgataattg agcgtacgcg
     7861 ccagtcatcg aggaattcat cttcgccttc acgcaggtgt aaggtgattt ccgtaccacg
     7921 gtcatttttg gtgatatcgg caacggtata ttcgccttcg cctgccgatt cccagaacac
     7981 gccattttcc ggcttgtcgc ctgccgcacg ggtacgtacg gtcactttat cggccacaat
     8041 aaacgcggag tagaagccta cgccaaactg accgatgagc tggctatctt tcgcctgatc
     8101 ggaccccatt gattcgagga aagatttggt gccggacttg gcaatggtgc ctaagtggtc
     8161 aatcacctca tcacgattca tccccacgcc gttatcggca atggtcaacg tacgcttatc
     8221 tttatcgaaa gagacgcgca cacgcagctc gccatctcct tcatacaggt ccgggtttga
     8281 cagagcgcgg aaacgcagct tgtccgccgc atctgaggcg ttagagatga gttcacgcag
     8341 gaagatttct ttattggaat aaagagaatg gatcatcagg tgcagaagct gtttaacttc
     8401 tgactgaaaa ccacgcgttt cttgtccttt catgtggata gacctcaaca atgccatttt
     8461 taatggtaaa aatacgttga gggtgagatg gggacaagcg ggtgtgattt caagcggagg
     8521 ccgcgaacgc cgcctccgtt tgttcagaaa ataatcttat ggcgtcccgc cagcgagtgg
     8581 gacagcgtcg taccgtcgac catctccagt tcgccgccaa ccggcacgcc gtgggcgata
     8641 cgactggctt cgacgccggc ctccgcgcac agctcggcaa tatagttcgc ggtagcctcc
     8701 ccttcaaccg tcgggttggt cgcgaggatc agctcgctga ttttttctga cgccagccgc
     8761 tgttccagac gatcgagacc gatatcatcc ggcccgatgc cgtccagcgg cgacaggtgg
     8821 cccatcagca cgaaataccg cccggaaaat tgcccggtct gctcaatggc gtagatatcc
     8881 gcaggactct ccaccacgca aatctggccg ttttcctggc gccgcgggtt cgaacagata
     8941 ttacaaacat cctgctcggt aaaggtgcgg cagtcggcgc agtggccgat ttccgacatc
     9001 gcccgggtca gcgcctgcgc caggcgcatt ccgccgctac gatcgcgctg caacagggta
     9061 aacgccatcc gttgcgccga cttagggccg acgcccggaa ggcagcgcaa cgcttccata
     9121 agctgagtta acagcggact ggtttgcatc agaatggcat cttaaagcct ggcggcagtt
     9181 gcataccgga agagacggaa gccatcttct ctttttgcgt ctcttcaatg cggcgcgccg
     9241 catcgttgaa ggccgcagcg accagatctt ccagcatctc tttgtcatct tccagcaggc
     9301 ttgggtcaat ttccacacgg cggcagttat gcgcaccgtt gatggtaacc ttcaccagac
     9361 ccgcgccgga ttcgccggtc acttccagct gcgcaatctc ttcctgcatt ttctgcattt
     9421 tttcctgcat ctgctgggcc tgcttcatca gattgcccag accgcctttt ccaaacataa
     9481 gctctctctc ttgatggttc acaatcgcaa gccgggctta cgatcaaatg gggcggatac
     9541 tctcttcatc cagctcggcg tcgaagaatc gacgcagcgt ctgaatgtta ttatccgcga
     9601 taattgactc acgcgcttgc gcgagtttct cttcataaat ggcctgacgc cattccagcg
     9661 gcgtacgcac cgcgggatta tcatcttcaa cgatggtcag ttcaaccgtc gttcccgtca
     9721 gatcgctgag cgcttgcgcc agcttttgct gcgcaccgct ggaattgagg tgccgctgcg
     9781 tcgagcgcag atgcagacaa accgcgttgc cgttctgctc cttccaggca ttgagcgcca
     9841 cctgctccac cagcttaggc aaagaaagct ggcttacctg cgccgcccac ggatcgcgct
     9901 caatcgcttc cgccgccagt ttagccgcca gctccggcgt tttttcatgc tccagagctt
     9961 tcttaagcgc ttttggcgta gccaccactt ctttggtttg cactaccggc gtggtggcct
    10021 tccagcgata agcctctttc tttactggcg tcgtttccag cgcagacggc gccgggcgcg
    10081 cctgtacgcg ctccgaaacc gaggccagcc gctccagcgc agagttattc accggccgcg
    10141 cgcgggatgc ggctgccggt tcactctttt ttgttttggt tactccctgc gcgcgctgta
    10201 gctgattgcg cgccgccagc acctgactgg tagacgccgg cagcggcgct ggcgatgtct
    10261 gcggcgcggg cgccgacggc tgctgcacct gcggcggcgt cattaccgcc gttggggcca
    10321 cgggcgcaaa agactgccgc ggcgtttcag gctccggcaa gggcatacgc gggtgaaacg
    10381 ccagcgcacg caataacgtc atttcaacgc ccatccgccg gtccggcgcc cagggcaatt
    10441 ctttgcgacc aatcaacaac gtctgataat agagctgaag atcgccggga ggcaccgtcc
    10501 gggcaagttc gcgcatccgt tgctcgatag ccgccatatc gctgcctaac gcggcaggcg
    10561 aaagttgcac catcgcaata cggtgcagca ggctaagcat ttcgaccagc agcgcttccc
    10621 attcaatacc gcgcgccgcc gcctcgttga taagcgacat gacgcgttcg ccgttagcgt
    10681 caaccactgc ctcgactaat gacaaagcct ggtcgtcgtc cagcgtaccg agcatggcgc
    10741 ttaccgcctg cgtcgaaacc tgcccgtcgc cactggcgat cgcctggtca gtcagactta
    10801 atgcatcgcg caggctgccg tcagccgcgc gtgataacaa ctgcaacgcg cggggttcgt
    10861 gagcgatatg ttcctcattg agaatatgct caagctgatg gcgaatctgt tcaacatcca
    10921 gcgctttgag atgaaactgt aggcagcgcg acaaaatggt caccggcagc ttctgcggat
    10981 cggtggtcgc cagtaaaaat ttcacatgcg ctggcggctc ttcaagcgtt ttaagtagcg
    11041 cattaaagct gtggcgcgac agcatgtgga cttcatcgat cagatagact ttaaagcgac
    11101 cgcgcgcagg cgcgtactgg acgttatcca gcaggtcgcg ggtgtcttcg actttggtac
    11161 gcgatgcggc gtcaatctca atgagatcga caaaacgccc ttgctcaatt tcccgacagt
    11221 tatcgcaaac gccgcacggc gtcgcggtaa taccggtttc gcagttcagc cccttcgcca
    11281 gcagtcgggc gatagaagtt ttaccgacgc cgcgcgtgcc ggaaaaaaga tatgcgtgat
    11341 gaatgcgccc taacgacaag ccgttcgcca gtgcggtcag cacatgttcc tggccgacga
    11401 cgtcagcaaa ggtttgtggg cgccattttc tggctaagac ctgataactc attggcaggc
    11461 tctgaaacgc tggaaggtgg attcatagaa gggtaatgct aacacaacct cgccgataca
    11521 gcgaggttgt ctctctggct aaaatagcag tgcgaatagc ctgaatcaat gccctggaaa
    11581 cggcatcagg ctataacagg taatcccctg cttttccaga cgctgctcgc cgcccagatc
    11641 gaacaaattg atgatgaacg ccgcatcggt gactttcccg cccagacgac ggatcagctt
    11701 cacggtcgcc tcaatggtgc cgccagtcgc cagcagatcg tccacgacca gcacgttgtc
    11761 gccaggttta atcgcgtcga catggatttc cagctgatcg gtgccgtact ctaattcata
    11821 ggtctcggca atagtttcac gcggtaattt gcgcggttta cgtaccggaa caaaaccaac
    11881 gcccagccca agcgcaaccg gcgcgccaaa caggaagcca cgcgcttcgg tgccgaccac
    11941 tttggtgata cccgcatttt tataacgctc aactaacagt tcaatactga gcgcgtaggc
    12001 tttcgggtct tccagtaagc tggtgacatc acggaaaaga atgcccggtt tcgggtaatc
    12061 ctgaatgctt ttgatgctgt ttttgagaaa ctcaagctgc tgtgcagtcg cggtcatgga
    12121 tatatgcctg ctaagtacgg tgttactcac ggcgcaatac ttttcagtca ggggtaacgc
    12181 tcggttactc tttgaccgcc tgcgcctgtg ctcgaaaacg gtcgaattta ctggctgtga
    12241 acgacaattg caacagcgat tcgtgtgctt cagcgctttt gttgcttttc atcaatcacc
    12301 ggtatccgcc acataaaaat cagcaggcag gccaaaataa ccaacagcag cacccgcacc
    12361 cacatcatat tcaccagcca cagcgaaata ccaaaggtca gcaatatcaa cgcgatcgct
    12421 cgcggtttcg ctcccggcgg catggcccga tagcgctgcc agtggcgcag ataaccgcca
    12481 aaccatgagc ggtataacaa ccaagcatgg aaacgcggcg acgagcgggc gaaacaccag
    12541 gctgccagta aaatgaacgg cgtagtcggc aacaggggca aaaccacgcc cagtgtccct
    12601 aatactaccg ccagccagcc aatgatgatt aaaatagtac gttgcataat gcgaatcgtt
    12661 atcaaacaga aggctactgt agcacagcct gtcttatttt catcggggtg ttgaattgaa
    12721 aaccgctatg ctgttacaga cgctggaaga gaagctggcg acgctacgcc aacgctgcgc
    12781 gccgctggcg taacatgcga cgttaagcgc gcgctttgac cgacaccttt tccgtacccg
    12841 cagtactctg ttgcagggat atctggaaga ggcagacgcc aatctcgccg cgttgcgtca
    12901 ggcggtaaaa catgagcaac tgccgcaagt cgcctggctg gcggaacatc tggcttcgca
    12961 actggaggcg atatcgcgtg aaaccgccgc ctggtcgctg cgccagtggg atgccgccgc
    13021 accagggctt ggccgttggc agcgcagacg aatacagcat caggagtttg aatgtcgact
    13081 gctggcgatg acacaggagc gcaaaattcg tctggcgcag gcgaccggcc ttgtcgaaca
    13141 acaaacgctg caaaaggaag tcgagatcta tgaaggacgg ctggcgcgct gccgacatgc
    13201 gctggagaaa atagaaaacg tactggcgcg tttaccccgt taacccagga gaaagtatgt
    13261 cgcttgaaaa tgcccctgat gaagtcaaac tggccgtgga tttaattgtg ctgcttgaag
    13321 agaatcgctt accggcacga acggtgctac gcgcgctgga aatagttatg cgtgattatg
    13381 aaaacaagtt aaaaagtacg gaagacgact cgcaaacaga gtaatagccc cctggtttgt
    13441 cctcgttgtc gctgacaaag tggtcgctac agtcaggcaa caaaggacgg ggcatggaac
    13501 gtctacccac cacgccgcac gatgcggtat tccgacagat gctgatgcaa aaagaggtcg
    13561 cccgcgactt tctggctatc cacttgccag aagactttct tgcaatctgc gatctggatt
    13621 cactgaagct ggagtcgggg agttttgttg aagacaattt acgcagccgc tattcagata
    13681 ttctctactc tctgcatacc caacacggcc ccgggtatgt ttacgcgctt attgaacatc
    13741 agagcaaatc agaccggctg atggcttttc gcctgatgcg gtacgccatt gccgccatgc
    13801 agcgtcatct ggatgccggc catgatacct tgccgctggt ggtaccaatc ctcttttatc
    13861 acggtccgga aagcccgtgg ccctatagcc ttaactggca taatatgttt gtgaaaccgg
    13921 atatggcgaa agccttatac agtcatgaat ttgcgctggt cgacctaacg ataatgccgg
    13981 ataatcagct tttgcagcat cggcggatag cgatgttaga gctcctgcaa aaacatattc
    14041 gtcaacgcga tttaagcgaa ctgctcgacc cccttatcac gcttttaacg caggatcatt
    14101 tgacggacgc gcagctcagt gtgctgatca actatatgtt gaaagcagga aacgccgcag
    14161 aacccggggc gctaattcgt caactggcgc agggcgcgcc gcagtataag gaacaactga
    14221 tgacaatagc ggaatggctg gaagaaaaag gccgaacgga agggttgcga aaagggcttg
    14281 agcaagggtt ggcacaaggc cgtgaggccg aagcgcgcgc tattgcccgc aaaatgcttg
    14341 ccaacgggct ggaacccggg ctcatcgcca gcgtcaccgg cattacgccg gaagagcttt
    14401 ctacgctttc gcattagcgg cgccgcgcgc actcataaag cgcgcggccc accgcctttt
    14461 agcttgccgc cggcgccaga tcgccgccgt tgagatcgcg cttcacttca gtgacttcgt
    14521 cgcccttcgc gttatgcaga tgcacctcaa gctggttaaa ggcaatattg atatcatttt
    14581 cacggcacag tcgatcgatc gcgcggttca gttcatccac cgtatggcta cgatcacgca
    14641 attcacgcac atacagacgc agttcatgat ccagagtgct ggcgccaaag gtggtgaaga
    14701 atacggcagg ttccggatcg tgcatcacct tcggatgctc catcgccgcc tgtagcagga
    14761 ctcttttcac tttctccaga tccgagccat aggccacgcc aagccggatc accagacgtg
    14821 tcgtggtatc ggagagggac cagttaatca gccgctccgt tacgaacgct ttgttcggaa
    14881 tgatcacttc tttacgatca aaatcggtaa tagtggtggc gcgaatacga atcttactga
    14941 ccgtgccgga gtaggtgccg atcgttaccg tatcgccaat gcgtaccgga cgttcgaaga
    15001 ggatgattaa acccgagaca aagttaccga agatctcctg tagcccaaaa ccgagaccta
    15061 ccgacaacgc cgccgccagc cactggagtt tatcccacga gacgccgagc gatccgaata
    15121 ctgtcatcgc gccaacagcg ataatgacgt agttaaggat cgtggtgatc gcatacgaag
    15181 ccccttggcg catattcagg cgtgaaagca ccagcacttc cagcaggccg ggtaagttgc
    15241 ggatgagcgc ccaggccacc atcgcggcaa taatggcaaa tagcaagctg cccatcgtca
    15301 cgcttttcac caccgcagcg ccagcttcgg agccgttgta gtgccacagc gtgatgctat
    15361 caagatagct gaatacggtg atcaaatcgg accaaatcgc ccagaacata acgccaaaca
    15421 gggcaagcat tagcagcatc gtgatacgta atgtttgctg gttaatttgc tccaacgcga
    15481 tggtgggttc ttcctgtggt tccgcccctt ccgctccctc ttttaccagg ttctgacgac
    15541 gagccagcgc gcgtcgccag gcaatccggc gcgccgctac acttaacccg cgcagcaccg
    15601 tttgataaag caggttccag ataatgacca gatagacggt ttcaatccag cgccccgcca
    15661 ggcgcagggt ggtatagaaa tagccagtcg ccgttaatac cattaacgcc actggaataa
    15721 tggaaagaat cgtcacggtc accagtcgaa tgccgtgaga ttctttatcg cgccagcttt
    15781 cccggcacag tggccacacc agcaatgtta tgaccagcag attgaggaaa ataaccgcct
    15841 gccccagcac gtcatccatc agattcagcg gcgacaactc cgccaccaca gaccaaaagt
    15901 gcagcggcag caatgcgagg ctaatgcgta caatctggcg acgccagtgg ctggtcaact
    15961 gcgccggcat accaaaatgg cgtatcgcca cgccttcttt ttccagcacc ttccagcaca
    16021 gcccaaagac cagccagaac atcgcgagct ttttactaaa ggcccagagc agatcgctga
    16081 tatttagctg catggtcagc aggatcaatc caatcgcgag gataatcagg cacaccggca
    16141 gcgcgcggat cagatcgatc agaatagctt ttggcgtatt gagctgacta tcgttacgca
    16201 gcgatcccac ggcggcggcc agcttctgtt gatacgcttt taaccatttc agacgccagc
    16261 ggattaaacc ggcgatgagc aagagcggca acccggccaa aaaagcaata aatactgcgg
    16321 gccaggcttt ttgccagttc accgtgattt tcatggcgct gaattgctct tttaacgttt
    16381 gggggaacgc tttaagccag tcccagtcca tagggcggtt actgttcacc caaaaaatct
    16441 gctgcgtcag aatggctttc agatttttcg agacgctcat caactgctgc tggttaactt
    16501 gcaggttaat cgccatcatc agctggttac ccaactgttt atttagctga tccaatagct
    16561 cacggcgcat ctccaccacc tgaagcaacg catcatgaac ttcatcattc acctcgctgg
    16621 tatgcccctc ctccagcttg tcgacaaagg catcgctttg gaataaggca tcacgctgct
    16681 ggttgatttc aaactgctcc agacgcaaat ccgcaatgcg gttggtcata tcttcgagtt
    16741 cgtcggcgga gggcagggtt tgctgctgtt gataaagaat acgcgacagc aacaggctgc
    16801 cttttaagac ggcaatctgt tctttgatat ttctttccga ctgcagagcg cgatcgagcc
    16861 agttttttac tttaatgttt tgctgcatca acatattgcc gttttcggtc gcgacaatca
    16921 gacgctggct gagttgatgg ttaatatcca gttcctgttt taccaacggg ttcgcctgga
    16981 tacgcgccgt ttcgtccggc gaaatagcct cctgggccgt tttttccgtt agcgtaagtc
    17041 gtttactgtt gaccgcctcc tgtaaaagtt gaagctgatg ttcaaggcga ttactgttgg
    17101 ccgtcacgta atcccgctgt ttttgcaggg tgtcctgcaa aacggtattc ccttcaagac
    17161 tcttacgttg ctggtcgatc tgcgcattaa gcagcgcctg ttgtgcctgt aataacacct
    17221 gttggctggg gcgaagcgcg gcttcgccga cgttattgcc gtccagacgg ttacggattt
    17281 gctgtatttg ctgtgaggcg gtatacatgg cgttttgcac gcgctccggc tgggtttgta
    17341 gcgaaacaag ctggctgtta taagcggcaa gatcgttttg cgagttttgc aaatcatcca
    17401 gtacctgcgc cacgcgcagc tcaagctgac gtagcgaaag cgcactcagc gtttttcgca
    17461 tttcatcatc attatcgaca tcgctcagcg cattcaacgc agccgtcgcc tgacgcattt
    17521 tttcaggcgc ctgcgccacc ttctgccgta gctgtacggt ctcctctttt acccgctcga
    17581 ttttctccag cgtagctaac gtatcaataa ggtcttgctg gacgagctta tcctgggcgg
    17641 agagatcttt ttgcttattc agcgtatcca gctggttttg cacatccgct tttgacggca
    17701 ggtcgccatt cgtttgcccc cgggcaaacg ccagagactg acaggacagc aggataataa
    17761 gaacgctaat tgtaataaaa acaaaatgct gtgaacgttt ataaagctgc aacatagtca
    17821 tgagaatgaa gtgtctgaac cggcaagcag accggaaata attgagtcgc aagaatatca
    17881 cgcctgtaac aaacagaata gcgacacaga aaatgtccag gagttttcct ggaatattat
    17941 cagggggagc cgttgaccgt cgacgcgcgc agcgtcggac acaattgata catctccagc
    18001 aggatcgtga cgtaggcgcg agcttctttt tttaaatcaa acgattgcgg agcaaataac
    18061 cagttttcca tgagccctga aataaagctg cgcatcagta tcgccgcacg acgggtcagc
    18121 agattttcag gcagcatttt agcattaata caatgtttta acgtttgttc aatccgatcg
    18181 taactttcca gacaaaggct acgttgcgcc tgttgaacca caaccatttc tccgacaaac
    18241 tcacatttat ggaatataat ctccatcaat aagcggcgtc gttcttctgt tacagtagct
    18301 tcaagaatat gaactaaaat ttctcttaat acagatagtg gatcgtcggg gaattttgcc
    18361 tgatactcaa tctcaagctc accaatattg gattctgata gctcccagat ctcactgaat
    18421 aaatccgact tatttttgaa atgccaatag attgcgccgc gcgtcacgcc agcagcgttc
    18481 gcaatctccg ccagcgaggt tgccgatacg ccttgctgcg agaacaaacg cagggccaca
    18541 tccaggatgt gttgtcgtgt ctccagcgct tgttgtttgg tttttcgtgc catatgtcgg
    18601 tgaatttaca ggcgttagat ttacatacat ttatggatgt atgtaccata gcatgacgat
    18661 aatataaacg cagcaatggg tttaaggacc tttgaccatt gaccaatttg aaatcggaca
    18721 ctcgaggttt acatatgaac aaaaacagag ggttaacgcc tctggcggtc gttctgatgc
    18781 tctcaggcag cttagcgcta acaggatgtg acgacaaaca ggaccagcaa ggcggccagc
    18841 agatgccaga agttggggtt gtcacactaa aaacggaacc actgcaaatc acaactgaac
    18901 ttccgggtcg taccgttgct taccgtatcg ccgaagttcg cccgcaggta agcggcatta
    18961 tcctgaagcg taatttcgtt gagggaagtg atatcgaagc gggagtctct ctctatcaga
    19021 ttgatcctgc gacttaccag gcgacttacg acagcgctaa gggcgatctg gcaaaagcgc
    19081 aggccgccgc gaatatcgct gaactgacgg tgaagcgtta tcaaaagctg ctgggtacgc
    19141 agtacatcag taagcaggaa tacgatcagg cgctggctga cgcgcaacaa gcgactgccg
    19201 ccgttgtcgc agcaaaagcc gccgttgaaa ccgcacgtat caacctggcg tataccaaag
    19261 tcacctcacc gattagcggt cgtattggta agtcgtccgt aacggaaggc gcgctggtac
    19321 agaacggtca ggcgtcggcg ctggcgacag tgcagcagct ggaccctatt tatgtcgatg
    19381 tgacccagtc cagcaatgac ttcctgcgcc tgaagcagga gctggcaaat ggttcgctga
    19441 agcaggaaaa cggcaaagcg aaggtcgatc tggtgacaag cgacggtatc aaattcccgc
    19501 agtccggtac gcttgaattc tccgacgtga ccgttgacca aagcaccggg tctattactt
    19561 tgcgcgccat cttccctaac ccggatcaca ccttattgcc aggaatgttc gttcgcgcac
    19621 gtctgcagga agggacaaaa ccgacggcat tactggttcc acaacagggc gttacccgta
    19681 ctccacgcgg cgatgccacg gtgctggtgg ttggcgctga taacaaagtg gaaacccgcc
    19741 aaatcgtcgc aagccaggcg atcggcgata agtggctggt gactgacggg ttgaaagcgg
    19801 gcgaccgcgt agtcgtcagc gggctgcaaa aagtacgtcc tggcgcacag gttaaagtgc
    19861 aggaaattac cgcggataac aaacagcaag ccgcaagcgg tgatcaacct gctcagccca
    19921 ggtcttaact taaacaggag ccgttaagac atgcctaatt tctttatcga tcgccctata
    19981 tttgcgtggg tgatcgccat catcatcatg ttggcagggg ggctcgcgat cctcaaattg
    20041 ccggtagcgc aatatccgac gattgcgcca ccagcagtga cgatctccgc aacctaccct
    20101 ggcgctgatg cgaaaacggt acaggatacc gtcacgcagg ttatcgaaca gaatatgaac
    20161 ggtatcgata acctgatgta tatgtcctcc aacagtgact ccacggggac cgtacagatc
    20221 acgctgacct ttgaatccgg caccgatgcg gatatcgcgc aggttcaggt tcagaacaag
    20281 ttgcaactgg caatgccgtt acttccccag gaagtacagc aacagggcgt gagcgttgag
    20341 aagtcctcaa gtagcttcct gatggtagtg ggcgtcatta acaccgacgg caccatgacc
    20401 caggaggata tttcggatta cgttgccgcc aatatgaaag atccgatcag ccgtacctct
    20461 ggggtgggcg acgtccagct gtttggttcg cagtatgcga tgcgtatctg gatgaatccg
    20521 acagagctga ccaaatacca actgacgccg gtcgacgtga ttaacgcgat caaagcgcag
    20581 aacgcccagg tcgcggcagg tcagctcggt ggtacaccgc cggtaaaagg ccagcagctt
    20641 aacgcatcga ttattgccca aacgcgtctg acctcaacgg atgagtttgg caaaatcctg
    20701 ctgaaagtga atcaggatgg ctctcaggtt cgtctgcggg atgtagcgaa aattgagctt
    20761 ggcggcgaaa actacgacgt catcgcgaaa tttaacggtc agccagcgtc aggtcttggc
    20821 atcaaactgg ctaccggcgc caacgcgctg gataccgcta ccgctattcg cgccgaactg
    20881 aaaaaaatgg aaccgttctt cccgccaggg atgaaaatcg tctacccgta tgacaccacg
    20941 ccgttcgtga agatctctat tcatgaagtg gtaaaaacgc tggtcgaagc gattatcctc
    21001 gtgttcttgg tgatgtacct gttcctgcag aacttccgcg cgacgttgat tccgactatt
    21061 gcggttccgg tggtgttgtt gggaaccttt gccgtgcttg cggcattcgg tttctcgata
    21121 aacacgctga cgatgttcgg gatggtgctc gccatcggct tgctggtgga tgacgccatc
    21181 gtggtggtcg agaacgtcga acgtgttatg acggaagaag gccttccgcc gaaggaagcg
    21241 acgcgcaaat ccatgggcca gattcagggc gcattggtgg gtatcgcgat ggtactgtcg
    21301 gcggtattta ttccgatggc cttctttggc ggctcaaccg gggcaattta tcgtcagttc
    21361 tctatcacca tcgtatcggc gatggcgctg tcggtgctgg tcgcgctgat cctgacgccc
    21421 gcgctgtgcg cgacgatgct caaacccgtc gccaaaggcg atcatggcga agggaaaaaa
    21481 ggctttttcg gctggtttaa ccgcctgttt gataagagca cgcatcacta caccgatagc
    21541 gtagggaata ttctgcgcag caccgggcgt tatctgctgc tctatctcat tatcgtcgtc
    21601 ggtatggctt atctgttcgt tcgtctgcca agctctttct tgccggatga agaccagggc
    21661 gtattcctga caatggtcca gctccccgcc ggcgcgacgc aagagcgcac gcaaaaagtg
    21721 ctggatgagg tcacggatta ctatctgaac aaagagaaag ccaacgttga atcggtattc
    21781 gccgtcaacg gcttcggttt tgcagggcgc ggtcagaata ccggtattgc atttgtgtcg
    21841 ttgaaagact gggccgatcg tccaggcgaa aaaaacaagg ttgaagcgat tacccagcgg
    21901 gcaaccgcag cgttttcaca aattaaagat gcgatggtct tcgcctttaa cctaccggcg
    21961 attgttgaac tgggcaccgc aaccgggttt gacttcgagt tgattgacca ggcgggactt
    22021 ggtcacgaaa aactcaccca ggcacgtaat cagttgttcg gcgaggtggc gaaatatcct
    22081 gatctgttgg tcggcgttcg acctaacggt ctggaagata cgccgcagtt taaaatcgat
    22141 atcgaccagg aaaaagctca ggcgctgggc gtgtctatta gcgacattaa taccacgctg
    22201 ggcgcagcat ggggcggcag ctatgtaaac gactttatcg atcgcggtcg tgtgaagaaa
    22261 gtttacgtga tgtccgaagc gaaataccgc atgttgccgg atgatattaa cgactggtac
    22321 gttcgtggta gcgatggtca gatggtgccg ttctccgcat tctcctcttc ccgctgggaa
    22381 tatggttcgc cgcgtctgga acgctataac ggtctgcctt cgatggaaat tctgggtcag
    22441 gcggcgccag gcaagagtac tggtgaagcg atggcgatga tggaagaact ggccagcaag
    22501 ctgccgtcag gcattgggta tgactggacc gggatgtcct accaggagcg gttgtccggc
    22561 aaccaggccc ctgccctgta tgctatctcg ctaatcgtcg tcttcctgtg tctggcggca
    22621 ttgtatgaga gctggtctat cccgttctcc gtaatgctgg ttgttccgct tggggttatc
    22681 ggcgcgctgc tggccgcgac cttccgcgga ctgactaacg acgtttactt ccaggtgggc
    22741 ctgctcacaa ccattgggtt gtcggcgaag aacgcgatac ttatcgtcga attcgccaaa
    22801 gacttaatgg ataaagaagg gaaaggtctg gtagaagcga tgctggaggc cgtccggatg
    22861 cgtttgcgtc cgattctgat gacctcgtta gcgttcatgc tgggggttat gccgctggtt
    22921 atcagttccg gcgcgggttc cggcgcgcag aatgcggtag gtactggcgt actgggcggg
    22981 atggtaacgg caaccgtact ggctattttc ttcgtaccag tcttcttcgt ggtggtacgc
    23041 cgccgcttta gccgtaaaag cgaagatatt gagcatagtc attcgacaga acatcgctga
    23101 tttgctcact gttgataagg ccgcgcaagc ggcctttttt acgca
//
LOCUS       DAJVSD010000046        22839 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.046, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000046 DAJVSD010000000
VERSION     DAJVSD010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 22839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22839
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.046"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            62..2242
                     /gene="katG"
                     /locus_tag="OQP62_001508"
     CDS             62..2242
                     /gene="katG"
                     /locus_tag="OQP62_001508"
                     /EC_number="1.11.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase/peroxidase HPI"
                     /protein_id="HCS1721092.1"
                     /translation="MSTTDDTHNTLSTGKCPFHQGGHDRSAGAGTASRDWWPNQLRVD
                     LLNQHSNRSNPLGEDFDYRKEFSKLDYSALKGDLKALLTDSQPWWPADWGSYVGLFIR
                     MAWHGAGTYRSIDGRGGAGRGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGQKISWA
                     DLFILAGNVALENSGFRTFGFGAGREDVWEPDLDVNWGDEKAWLTHRHPEALAKAPLG
                     ATEMGLIYVNPEGPDHSGEPLSAAAAIRATFGNMGMNDEETVALIAGGHTLGKTHGAA
                     AASHVGADPEAAPIEAQGLGWASSYGSGVGADAITSGLEVVWTQTPTQWSNYFFENLF
                     KYEWVQTRSPAGAIQFEAVDAPDIIPDPFDPSKKRKPTMLVTDLTLRFDPEFEKISRR
                     FLNDPQAFNEAFARAWFKLTHRDMGPKARYIGPEVPKEDLIWQDPLPQPLYQPTQEDI
                     INLKAAIAASGLSISEMVSVAWASASTFRGGDKRGGANGARLALAPQRDWEVNAVAAR
                     VLPVLEALQKTTNKASLADIIVLAGVVGIEQAAAAAGVSISVPFAPGRVDARQDQTDI
                     EMFSLLEPIADGFRNYRARLDVSTTESLLIDKAQQLTLTAPEMTVLVGGMRVLGTNFD
                     GSQNGVFTDRPGVLSTDFFANLLDMRYEWKPTDDANELFEGRDRLTGEVKYTATRADL
                     VFGSNSVLRALAEVYACSDAHEKFVKDFVAAWVKVMNLDRFDLL"
     gene            complement(2349..3452)
                     /locus_tag="OQP62_001509"
     CDS             complement(2349..3452)
                     /locus_tag="OQP62_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol dehydrogenase"
                     /protein_id="HCS1721093.1"
                     /translation="MDRIIQSPGKYIQGANVIARLGDYLKPMANNWLVVGDKFVLGFA
                     EETLRKSLTDAGLSVEIAPFGGECSQNEIDRLRAVAEKSQCGAVLGIGGGKTLDTAKA
                     LAHFMNVPVAIAPTIASTDAPCSALSVIYTDAGEFDRYLLLPHNPNMVIVDTQIVAGA
                     PARLLAAGIGDALATWFEARACSRSGATTMAGGKCTQAALALAELCYNTLIEEGEKAM
                     LAAEQHVVTPALERVIEANTYLSGVGFESGGLAAAHAIHNGLTAIPDAHHYYHGEKVA
                     FGTLTQLVLENASVEEIETVAALCHSVGLPITLAQLDIKQDIPAKMRIVAEASCAEGE
                     TIHNMPGGATPDEVYAALLVADQYGQRFLQEWE"
     gene            complement(3464..4126)
                     /gene="fsa"
                     /locus_tag="OQP62_001510"
     CDS             complement(3464..4126)
                     /gene="fsa"
                     /locus_tag="OQP62_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HCS1721094.1"
                     /translation="MELYLDTANVAEVERLARIFPIAGVTTNPSIVAASKESIWDVLP
                     RLQNAIGEEGTLFAQTMSRDAKGMVEEAKRLNNAIPGIVVKIPVTAEGLAAIKLLKKE
                     GIVTLGTAVYSASQGLLAALAGAKYVAPYVNRVDAQGGDGIRMVLELQTLLEHHAPDS
                     MVLAASFKTPRQALDCLLAGCQAITLPLDVAQQMLNTPAVESAIEKFEQDWKNAFGNL
                     NL"
     gene            complement(4381..5217)
                     /locus_tag="OQP62_001511"
     CDS             complement(4381..5217)
                     /locus_tag="OQP62_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1721095.1"
                     /translation="MYHDVSHLLSRLINGPLPLRQIYFASASGPAPELAYQVDFPRLE
                     IVLEGELTDMSITAPLIPCDVLYVPAGGWNIPQWQTPVTTLSILFGKQQLGFSVVYWD
                     GQQHQNLTKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQ
                     IQTASRSRALFEAIREYIDERYAAPLTRESVAQAFYISPNYLSHLFQKTGAIGFNEYL
                     NHTRLEHAKTLLKGYDLKVKEVAHRCGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLT
                     EK"
     gene            complement(5378..7111)
                     /locus_tag="OQP62_001512"
     CDS             complement(5378..7111)
                     /locus_tag="OQP62_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase CptA"
                     /protein_id="HCS1721096.1"
                     /translation="MQSTLLQTKPAFSWKALGWALLYFWFFSTLLQAIIYLTGYSGTN
                     GLRDSLLYSSLWLIPVFLFPGRIRVIAAVIGVVLWAASLAALSYYVIYGQEFSQSVLF
                     VMFETNANEASEYLSQYFSLKIVLVALAYTVAAILLWTRLRPVYIPSPWRYLVSFALL
                     YGLILHPIAMNTFIKHKSMEKTLDSLASRMEPAAPWQFITGYYQYRLQLASLNKLLNE
                     NDALPPLANFQDHSGDAPRTLVLVIGESTQRGRMSLYGYPRETTPELDALHKTDPGLT
                     VFNNVVTSRPYTIEILQQALTFADEKNPDWYLTKPSLMNMMKQAGYKTFWITNQQTMT
                     ARNTMLTVFSKQTDKQFYMNQQRTQSAREYDSNVLAPFKAVLADPAPKKFIIVHLLGT
                     HIKYKFRYPENQGKFDGKTDHVPPGLSSDELESYNDYDNANLYNDYVVASLIKDYKAT
                     DPNGFLLYFSDHGEEVYDTPPHKTQGRNEDSPTRHMYTVPFLLWTSEKWQAAHPRDFS
                     QDVDRKYSSSELIHTWSDLAGLTYDGYDPTRSITNPQFKETTRWIGNPYKKNALIDYD
                     TLPYGDQVGNQ"
     gene            complement(7313..9964)
                     /gene="ppc"
                     /locus_tag="OQP62_001513"
     CDS             complement(7313..9964)
                     /gene="ppc"
                     /locus_tag="OQP62_001513"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004203687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HCS1721097.1"
                     /translation="MNEQYSALRSNVSMLGKVLGETIKDALGEHILDRVETIRKLSKS
                     SRAGNEANRQELLTTLQNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPE
                     VIAHTLRKLKNQPDLNDATIKKAVESLSLELVLTAHPTEITRRTLIHKMGEINNCLKQ
                     LDNTDIADYERHQVMRRLRQLIAQSWHTDEIRKQRPSPVDEAKWGFAVVENSLWQGVP
                     NYLRELNEQLEENLGYKLPVDFVPVRFTSWMGGDRDGNPNVTAEITRHVLLLSRWKAT
                     DLFLKDIHVLVSELSMVDATPELLALVGEEGASEPYRYLMKKLRARLMATQSWLEARL
                     KGEKLPKPAGLLTQNEQLWEPLYACYQSLQACGMGIIANGELLDTLRRVKCFGVPLVR
                     IDIRQESTRHTEALGEITRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWEPSND
                     TREVLETCKVIAEAPKGSIAAYVISMAKTPSDVLAVHLLLKEAGIGFAMPVAPLFETL
                     DDLNNADDVMTQLLNIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIK
                     TCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLP
                     EVTVSSLSLYTSAILEANLLPPPEPKDSWRHIMDELSVISCETYRGYVRENKDFVPYF
                     RSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQK
                     VVEDGKQSELEAMCRDWPFFSTRLGMLEMVFSKADLWLADYYDQRLVAKTLWPLGKEL
                     RDLLEEDIKVVLAIANDSHLMADLPWIAESIQLRNVYTDPLNVLQAELLYRSRLTEEQ
                     GKSPDPRVEQALMVTIAGVAAGMRNTG"
     gene            complement(10333..11484)
                     /gene="argE"
                     /locus_tag="OQP62_001514"
     CDS             complement(10333..11484)
                     /gene="argE"
                     /locus_tag="OQP62_001514"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HCS1721098.1"
                     /translation="MKNVLPPFIEIYRALIATPSISATEESLDQSNASLITLLAGWFS
                     DLGFNVEVQPVPGTRNKFNMLASTGHGAGGLLLTGHTDTVPFDDGRWTRDPFTLTEHD
                     NKLYGLGTADMKGFFAFILDALRDVDVTKLKKPLYILATADEETSMAGARYFSETTAL
                     RPDCAIIGEPTSLQPIRAHKGHISNVVRVLGQSGHSSDPARGVNAIELMHDAIGHIMQ
                     LRDSLKARYHYEAFTVPYPTLNLGHIHGGDASNRICACCELHMDIRPLPGMTLNDLNG
                     LLNDALAPVSERWPGRLTVAELHPPIPGYECPPDHQLVEVVEKLLGTKTDVVNYCTEA
                     PFMQTLCPTLVLGPGSINQAHQPDEYLETRFIKPTRELITQVVHHFCWH"
     gene            11573..12577
                     /gene="argC"
                     /locus_tag="OQP62_001515"
     CDS             11573..12577
                     /gene="argC"
                     /locus_tag="OQP62_001515"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HCS1721099.1"
                     /translation="MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKL
                     ISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDL
                     SGAFRVNDRAFYEKYYGFTHQYPELLEQAVYGLAEWNADKLNTANLIAVPGCYPTAAQ
                     LSLKPLIDGGLLDLTQWPVINATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEI
                     AAHLGAEVIFTPHLGNFPRGILETITCRLKAGVTHAQVADVLQKAYGDKPLVRLYDKG
                     VPALKNVVGLPFCDIGFAVQGEHLIVVATEDNLLKGAAAQAVQCANIRFGFAETQSLI
                     "
     gene            12585..13361
                     /gene="argB"
                     /locus_tag="OQP62_001516"
     CDS             12585..13361
                     /gene="argB"
                     /locus_tag="OQP62_001516"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463002.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HCS1721100.1"
                     /translation="MMNPLIIKLGGVLLDSEEALERLFTALVNYRESHQRPLVIVHGG
                     GCVVDELMKGLNLPVKKKDGLRVTPADQIGIITGALAGTANKTLLAWAKKHHIASVGL
                     FLGDGDSVNVTQLDEALGHVGLAQPGSPKLINMLLENGFLPVVSSIGVTDDGQLMNVN
                     ADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTASKAEQLIDQGIITDGMIVKV
                     NAALDAARALGRPVDIASWRHAEQLPALFNGTPIGTRILA"
     gene            13479..14855
                     /gene="argH"
                     /locus_tag="OQP62_001517"
     CDS             13479..14855
                     /gene="argH"
                     /locus_tag="OQP62_001517"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HCS1721101.1"
                     /translation="MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKAL
                     VTVGVLTADEQRQLEEALNVLLEEVRANPQQILQSDAEDIHSWVEGKLIDKVGQLGKK
                     LHTGRSRNDQVATDLKLWCKETVMELLTANRQLQSALVETAQANQDAVMPGYTHLQRA
                     QPVTFAHWCLAYVEMLARDESRLQDTLKRLDVSPLGCGALAGTAYEIDREQLAGWLGF
                     TSATRNSLDSVSDRDHVLELLSDAAIGMVHLSRFAEDLIFFNSGEAGFVELSDRVTSG
                     SSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDI
                     WLDCLHMAALVLDGIQVKRPRCQDAAQQGYANATELADYLVAKGVPFREAHHIVGEAV
                     VEAIRQGKPLEALPLADLQKFSRVIGDDVYPILSLQSCLDKRAAKGGVSPQQVAQAID
                     DAKVRLAL"
     gene            15139..16056
                     /gene="oxyR"
                     /locus_tag="OQP62_001518"
     CDS             15139..16056
                     /gene="oxyR"
                     /locus_tag="OQP62_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016831323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator OxyR"
                     /protein_id="HCS1721102.1"
                     /translation="MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELG
                     VMLLERTSRKVLFTQAGLLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTIG
                     PYLLPLIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCAILALVKESEAFIEVPL
                     FDEPMMLAIYEDHPWANRDRVPMSDLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTH
                     FRATSLETLRNMVAAGSGITLLPALAVPQERKRDGVVYLPCIKPEPRRTVGLVYRPGS
                     PLRSRYEQLAEAIRGAMDGHFDKALKQAV"
     gene            complement(16039..17439)
                     /gene="sthA"
                     /locus_tag="OQP62_001519"
     CDS             complement(16039..17439)
                     /gene="sthA"
                     /locus_tag="OQP62_001519"
                     /EC_number="1.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Si-specific NAD(P)(+) transhydrogenase"
                     /protein_id="HCS1721103.1"
                     /translation="MPHSWDYDAVVIGSGPGGEGAAMGLVKQGARVAVIERYHNVGGG
                     CTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADILNHADNVINQQTRMRQ
                     GFYERNHCEILQGNAHFIDEHTLALECHDGTVETLTAEKFVIACGSRPYHPNDVDFSH
                     PRIYDSDSILSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQE
                     MSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTD
                     SLALENIGLETDSRGQLKVNSMYQTALPHVYAVGDVIGYPSLASAAYDQGRIAAQALV
                     KGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMN
                     VGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTM
                     AEAYRVAALNGLNRLF"
     gene            17638..18273
                     /gene="fabR"
                     /locus_tag="OQP62_001520"
     CDS             17638..18273
                     /gene="fabR"
                     /locus_tag="OQP62_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463006.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor FabR"
                     /protein_id="HCS1721104.1"
                     /translation="MMGVRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGI
                     APTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGN
                     NPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVT
                     IVFSAGAEALDIGAEQRRQLEERLVLQLRMIAKGAYYWYRREQEKIAHHSE"
     gene            18289..18648
                     /locus_tag="OQP62_001521"
     CDS             18289..18648
                     /locus_tag="OQP62_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YijD family membrane protein"
                     /protein_id="HCS1721105.1"
                     /translation="MKQSGQDKGTLLLALIAGLSINGTFAALFSAIVPFSVFPVISLV
                     LTVYCLHQRYQNRTMPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIL
                     VFWIGFKLRNRKQDTAE"
     gene            complement(18695..19795)
                     /gene="trmA"
                     /locus_tag="OQP62_001522"
     CDS             complement(18695..19795)
                     /gene="trmA"
                     /locus_tag="OQP62_001522"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HCS1721106.1"
                     /translation="MTPEHLPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHY
                     RMRAEFRLWHDGDNLYHIMFDQQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALR
                     HKLFQIDYLTTLSNQAVVSLLYHKKLDEEWREAATALRDALRAQGLNVHLIGRATKTK
                     IELDQDYIDERLPVAGKEIIYRQVENSFTQPNAAMNIQMLEWALEVTKDSKGDLLELY
                     CGNGNFSLALARNFNRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG
                     VREFNRLQGIDLKRYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLE
                     TLSQTHTVSRLALFDQFPYTHHMECGVLLTAR"
     regulatory      19910..20103
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            20169..22013
                     /gene="btuB"
                     /locus_tag="OQP62_001523"
     CDS             20169..22013
                     /gene="btuB"
                     /locus_tag="OQP62_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent vitamin B12 receptor BtuB"
                     /protein_id="HCS1721107.1"
                     /translation="MIKKATLLTAFSVTAFSAWAQDTSPDTLVVTANRFQQPRSAVLA
                     PVTIVTRQDIERWQSTSVNDVLRRLPGVDIAQSGGTGQNSSIFIRGTNSSHVLVLIDG
                     VRLNLAGVSGSADLSQFPVSLVQRIEYIRGPRSAIYGSDAIGGVVNIITTRDNPGTEL
                     TAGWGSNSYQNYDLSTQQQLGENTRATLIGDYEYTKGFDVVAKGGTGMQAQPDRDGFL
                     SKTLYGALEHTFSDRWSGFVRGYGYDNRTDYDAYYSPGSPLIDTRKLYSQSWDAGLRF
                     NGERIQSQLVSSYSHSKDYNYDPHYGRYDTSATLDEMKQYNVQWTNSVVVGHGNVGAG
                     VDWQKQTTTPGTGYVPEGYDQRNTGVYLTGLQQLGDFTLEAAARSDDNSQFGRHGTWQ
                     TSAGWEFIEGYRFIASYGTSYKAPNLGQLYGYYGNPNLNPEKSKQWEGAFEGLTAGVS
                     WRISGYRNDINDMIDYDDHLQKYYNEGKARIKGIEATANFDTGPLTHTVSYDYVDARN
                     AITDTPLPRRSKQMAKYQLDWDVYDFDWGVTYQYLGSRYDSDYSAYPYRTVKMGGVSL
                     WDLTVAYPVTSHLTVRGKIANLFDKDYETVYGYQTAGREYTLSGSYTF"
     gene            21958..22809
                     /gene="murI"
                     /locus_tag="OQP62_001524"
     CDS             21958..22809
                     /gene="murI"
                     /locus_tag="OQP62_001524"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HCS1721108.1"
                     /translation="MATKLQDENTPCLAATPSEPRPTVLVFDSGVGGLSVYDEIRRLL
                     PDLHYIYAFDNVAFPYGEKSETFIVERVVEIVTAVQQRYPLSLAVIACNTASTVSLPA
                     LREKFAFPVVGVVPAIKPAARLTANGVVGLLATRATVKRPYTHELIARFANECQIAML
                     GSAELVELAEAKLHGDSVSLEELRRILRPWLRMPEPPDTVVLGCTHFPLLRDELLQVL
                     PEGTRLVDSGAAIARRTAWLLEHEAPDAKSTDANIAYCMAMTPGAEQLLPVLQRYGFE
                     TLEKLAV"
BASE COUNT         5070 a         5910 c         6469 g         5390 t
ORIGIN      
        1 actatatcta tttgctcctg gtgtatatcg taacggtaac actttaaaag ggagctgaga
       61 tatgagcacg accgacgata cccataacac gttatccact ggaaaatgtc ctttccatca
      121 gggggggcat gaccgaagcg caggcgcagg gactgccagc cgcgactggt ggccgaacca
      181 gcttcgtgtg gatcttttga atcaacattc caaccgttct aacccgctgg gcgaagactt
      241 tgactaccgc aaagagttta gcaagttaga ctactccgcc ctgaaagggg atctcaaggc
      301 gctgctgacc gattcacaac cgtggtggcc cgccgactgg ggcagctatg tcggtttgtt
      361 tattcgtatg gcctggcatg gcgctggcac ctaccgttct attgatggtc gtggcggcgc
      421 gggtcgtggt caacagcgtt ttgcgccgct taactcctgg ccggataacg tcagcctgga
      481 taaggcgcgt cgtttgttgt ggccgattaa gcagaaatat ggccagaaaa tttcctgggc
      541 cgacctgttt attctggcgg gtaacgtggc gctggaaaac tccggcttcc gtaccttcgg
      601 tttcggcgcc gggcgtgaag atgtctggga accggatctg gatgtgaact ggggcgatga
      661 aaaagcctgg ttgactcacc gacaccctga agcgctggca aaagcgccgc tgggcgcgac
      721 cgagatgggc cttatctacg ttaacccgga ggggccggat cacagcggcg aaccactttc
      781 tgccgccgcc gctattcgcg ctacctttgg caatatgggg atgaacgacg aagagaccgt
      841 ggcgttgatc gctggcgggc ataccctcgg taaaacccac ggcgcggcag cagcatccca
      901 tgtaggggcc gatccggaag ccgcgccgat tgaagcgcag ggcttaggtt gggccagcag
      961 ctatggtagc ggcgttggcg cggatgctat tacctccggg ctggaagtgg tctggacgca
     1021 gacgccgacc cagtggagca actatttctt cgagaacctg ttcaaatatg agtgggtaca
     1081 aacccgtagt ccggctggcg ctatccagtt tgaagcggta gacgcgccgg atatcatccc
     1141 ggacccgttc gatccgtcga aaaaacgtaa gccaaccatg ctggtcaccg acctgacgct
     1201 gcgttttgat ccggagttcg agaagatttc ccgtcgtttc cttaacgatc cacaggcctt
     1261 taatgaagcc tttgctcgtg cctggttcaa actgacgcac agagatatgg gaccaaaagc
     1321 gcgttacatc ggaccggaag tgccgaaaga agatctgatc tggcaggacc cgttgccgca
     1381 accgctctac cagccaacgc aggaagacat tatcaacctg aaagcggcga tcgctgcatc
     1441 cgggctttct attagcgaga tggtttcggt tgcctgggca tccgcgtcta ctttccgcgg
     1501 cggcgataag cgtggcggcg ctaacggcgc gcgtctggca ttagcgcctc agcgcgactg
     1561 ggaggtcaac gccgttgcgg ctcgcgttct gccggtatta gaagcgctcc agaaaacgac
     1621 gaataaagcc tcgctggccg atattattgt gctggcgggc gtggtcggta tcgagcaggc
     1681 ggccgctgct gcgggtgtca gcatcagcgt accttttgcg ccgggccggg tggatgcgcg
     1741 tcaggatcag accgacatcg agatgttctc gctgcttgaa ccgattgccg atggattccg
     1801 taactatcgt gcgcgtctgg atgtgtcgac gaccgaatcg ctgttgattg ataaagcgca
     1861 gcagttaacg ttgaccgcgc cggaaatgac ggtactggtt ggcgggatgc gtgtgctggg
     1921 aaccaacttt gacggcagcc agaacggtgt ctttaccgac agaccgggcg tgctcagcac
     1981 tgacttcttc gctaatctgc tggatatgcg ttacgagtgg aagcccaccg acgacgctaa
     2041 tgagctgttc gaaggccggg atcgcctgac tggcgaggta aaatacacgg caacccgcgc
     2101 cgatctggtg tttggttcca actccgtact gcgcgcgctg gcggaagttt acgcgtgtag
     2161 cgatgcgcac gagaagtttg tgaaggactt cgtcgcggca tgggtgaaag tgatgaacct
     2221 ggaccgtttc gatctgttgt aaatcttatg ccggatgacg ctaacgctta tccggcctac
     2281 cgtctcatat gcccaccggg caaaaaaatc cccgcgcaat tgcggggatt tttcattgca
     2341 agccgacctt attcccattc ctgcaagaag cgttgaccgt actggtcggc gaccagcagc
     2401 gcggcgtaca cttcatccgg cgttgcgccg ccaggcatgt tatgaatagt ttcaccttct
     2461 gcgcaggagg cttccgcgac gatgcgcatt ttggccggga tatcctgctt aatatccagt
     2521 tgcgccagcg taatcggcag gccaacggaa tggcacagcg cagcaacggt ttcgatttct
     2581 tcgaccgacg cgttttccag caccagttgc gtcagcgtac cgaaagcgac cttctccccg
     2641 tgataatagt ggtgcgcatc cggaatcgcc gttaaaccgt tatgaatcgc gtgcgctgcg
     2701 gccagaccgc cgctttcaaa accgaccccg ctcaggtagg tgttggcttc gatgacacgt
     2761 tccagcgctg gcgtgacgac gtgctgttcg gcggccaaca tggctttttc gccttcttcg
     2821 atcagcgtgt tatagcatag ctccgccagg gccagcgcgg cctgtgtaca cttgccgccc
     2881 gccattgtgg tggcgccgct gcgtgagcag gcgcgcgctt caaaccaggt cgccagcgca
     2941 tcgccgatac cggctgccag cagacgcgcc ggcgcgcccg ccactatctg cgtatcgaca
     3001 atgaccatat tcgggttatg cggcagcagc agataacggt caaactcacc ggcatcggta
     3061 taaataaccg agagtgcgct gcacggtgcg tcggtagagg cgatggtcgg cgcgatagcg
     3121 accgggacgt tcataaagtg cgccagcgct ttggcggtat ccagcgtttt accgccgccg
     3181 atacccagta cggcgccaca ctgacttttt tcggcgacgg cgcgcagcct gtcgatctca
     3241 ttttgcgaac attcgccgcc aaacggggcg atttctactg acaaaccggc atccgtcagg
     3301 cttttgcgca gcgtctcttc ggcaaatccc agcacgaatt tatcgcccac aaccagccag
     3361 ttgttcgcca ttggttttaa ataatcgcca agacgcgcga tgacgtttgc accctgaata
     3421 tacttacctg gtgactgaat aatgcgatcc atacatttct ctcctacagg ttcagattac
     3481 caaaagcgtt tttccagtct tgctcaaact tctctattgc tgactctacc gcaggcgtat
     3541 tgagcatttg ttgcgctaca tctaaaggaa gggtaatcgc ctggcaacct gccagtaagc
     3601 aatccagcgc ctgccgcggc gttttaaagc tggccgccag taccatgctg tcgggcgcgt
     3661 gatgttccag tagcgtttgc agctccagaa ccatacgaat gccatcgccg ccctgcgcat
     3721 caacgcggtt gacgtaggga gcgacatatt ttgcgcccgc cagcgccgcc agcaggccct
     3781 gcgacgcgct gtagacggcg gtgcccagcg tcacgatgcc ttcttttttc agcaatttaa
     3841 tcgctgcaag gccttcggcg gttaccggaa ttttaaccac aatgccgggg atggcgttat
     3901 tcagccgttt ggcttcttcc accatccctt tcgcgtcgcg gctcatggtc tgcgcaaata
     3961 aagtgccttc ttcgccgatg gcgttttgca gcctgggcag cacatcccag atagattctt
     4021 tgctggctgc cacaatgctt ggattggtgg tgacgccggc aatcgggaaa atgcgcgcca
     4081 gacgttcaac ttccgccacg ttagcggtat ccagatagag ttccatagtc tttctcttcg
     4141 tgagttttcg ttatggacag gataaaggag cgtgccccgg atgcgctatg tgacaaatct
     4201 gccaaaaact ggacaaatgt gatgctcttg gtaaagtgtg atttacttca caagttggtg
     4261 atgattaacg tataacgtgc tgttgtatgc catgtggggg agtgaggttt ttgcattgat
     4321 attacaataa tccagtaaat gcgcgtttta tctactgtat tctctttatt ggcgtgtgga
     4381 ttatttctcc gttagctggc tgtgatactg gcggcgatac tccgaaggcg aacgttccgt
     4441 atttttgcga aacaggcggc agaaatagtt actgtcgaca aagccgcagc ggtgcgccac
     4501 ctctttcact ttcaggtcat agcccttcag caacgttttg gcgtgttcca gtcgcgtatg
     4561 gttcaggtat tcgttaaagc cgatggctcc cgttttctgg aacaggtgcg agaggtaatt
     4621 tggcgagata taaaacgcct gtgctaccga ttcgcgcgtc aacggcgcgg cgtagcgttc
     4681 atcaatatac tcccgaatgg cttcaaaaag cgcacggcta cgggaggcgg tctggatttg
     4741 gctgccgagc agatcgcggc aatggcttag taggctggcg acaatcaatc tggccgtttg
     4801 ctgctcttgc ggctgcatct gcatctcatt aagcgtttgt aacaggaacg agccgatacg
     4861 cgggccacgg cgcgcaacgt gctgtttcgt gaggttttga tgctgctgac cgtcccagta
     4921 gaccacgctg aaacctaact gctgtttgcc aaacagaatg ctcagggtgg tgacgggcgt
     4981 ttgccactgc gggatgttcc agccgccagc cggaacgtag agaacatcgc aaggaatgag
     5041 cggggcggta atgctcatgt cagtaagctc gccctccagc acaatctcca gccgcggaaa
     5101 atccacctgg tacgccagtt ccggcgctgg gccgctggcg ctggcaaaat aaatctggcg
     5161 cagcggcagc gggccgttga tgagacggga gagaaggtgg ctgacgtcgt gatacatgat
     5221 aatcccctgc cgatcgcaaa cagaggaaac agtaacgtcg aaaaccgatg tcctcaagca
     5281 attattgccg gatagcggcg ctttgcgcct tatccggact acgggagaga agaacgccag
     5341 gcccgataag cgttagcgtt atcgggcaac atacaggcta ttgattaccg acctgatcgc
     5401 catacggcaa cgtatcataa tcaatcagcg cgtttttctt atacgggttg ccaatccagc
     5461 gcgtggtctc tttgaactgc gggttggtga tggaacgcgt cgggtcgtaa ccatcatagg
     5521 tcaggcccgc taagtccgac caggtatgga taagctcgga actgctgtac ttacgatcga
     5581 catcctgtga gaagtcgcgc ggatgcgccg cctgccattt ctctgaggtc cacagcagga
     5641 acggcaccgt atacatatga cgggttggcg aatcttcgtt tcgtccctgc gtcttatgcg
     5701 gcggcgtgtc atacacttct tcaccgtggt cggagaagta gagcaggaaa ccgttcggat
     5761 cggtcgcttt atagtcctta atcaggctgg cgacaacata gtcgttatac aggttcgcgt
     5821 tgtcgtaatc gttatacgat tccagttcgt cgctgcttaa tcccggcgga acatggtcgg
     5881 ttttaccatc aaacttgccc tggttttctg gatagcggaa cttgtattta atgtgcgttc
     5941 ccagcagatg cacaataatg aattttttcg gcgccgggtc ggctaacacc gctttaaacg
     6001 gcgccagcac gttgctgtca tattcgcgcg cgctttgagt gcgctgctgg ttcatataga
     6061 actgcttatc agtctgctta gagaacacgg tcagcatggt attacgcgcc gtcatcgtct
     6121 gctggttagt gatccagaag gttttatacc cggcctgttt catcatattc atcagcgatg
     6181 gcttcgtcag ataccagtcc gggttctttt cgtccgcgaa cgttagcgcc tgttgcagga
     6241 tctcaatggt gtacggtcgc gaagttacca cattattaaa cacggtcagc ccggggtcgg
     6301 ttttatgcag cgcgtccagt tccggcgtgg tttcgcgcgg ataaccgtac agactcatac
     6361 ggccacgctg ggtcgattcg ccaatcacca gtaccagtgt gcgcggcgca tcgccggagt
     6421 ggtcctggaa gttagccagc ggcggcaggg catcgttttc attcagcagt ttattcagcg
     6481 aggcgagctg taaacggtac tgatagtagc cagtaataaa ttgccacgga gcggcgggtt
     6541 ccattcgtga cgccaggcta tccagcgttt tctccatcga cttatgcttg ataaaggtat
     6601 tcatcgcgat gggatggagg atcagcccgt acagcagggc aaacgacacc agataacgcc
     6661 agggggatgg aatataaacc gggcgcagac gtgtccacag caaaatcgcc gccaccgtat
     6721 aagccagcgc gacaagaaca attttcagac tgaaatattg gcttaaatat tcgctggctt
     6781 cattggcgtt ggtttcaaac atcacaaaca gcacgctttg cgagaactcc tgcccgtaga
     6841 ttacgtaata gctcagcgcc gccagcgagg cggcccagag tacgacgcca ataacggcag
     6901 caataacccg gatgcggcct ggaaacaaaa agaccgggat cagccatagt gagctgtaca
     6961 gtagcgaatc ccgcagaccg tttgtcccac tgtatccggt gagataaata atggcctgca
     7021 ggagggtgga aaagaaccaa aagtagagca gtgcccagcc cagggctttc cagctaaacg
     7081 cgggtttagt ctggagtaat gtggattgca taatgagagc ctgtctttaa tcgtagcgcc
     7141 aaacgtaacg cctgaacctt aaaagaatct gaagcaaacc tgctttatgc cgcacgtttt
     7201 gctaagaaag atttataaat gcagacagga atatattgaa aaaatgacga ggatgacagc
     7261 agtatttcat gccgccccca cataactgcg tgagggcggc tttcttttgg cgttagccgg
     7321 tgttgcgcat accggcggcg acgcccgcaa tcgtgaccat caacgcctgt tcgacgcgag
     7381 gatcgggcga tttgccctgc tcttcagtca gacgggaacg atacagcaat tcggcctgca
     7441 acacgtttaa tggatcggta taaacgtttc ttaactgaat ggactccgca atccacggta
     7501 agtcggccat caggtgcgaa tcgttggcaa tcgccagcac cactttaatg tcttcttcca
     7561 gtaggtctcg tagctctttg cccagcggcc aaagcgtttt cgccaccagg cgctgatcgt
     7621 aatagtcggc cagccacagg tcggctttcg agaacaccat ttccagcatc ccaagacgcg
     7681 tggagaagaa cggccagtcg cggcacatgg cttccagttc gctttgttta ccgtcttcca
     7741 ccactttttg cagcgcagta cccgcgccca gccaggctgg cagcatcagg cggttttgcg
     7801 tccaggcgaa gatccacgga atcgcgcgca gcgattcgac gccgccagtt ggacgacgtt
     7861 tcgccggacg tgagccgagc ggcaatttgc ccagctcttg ttccggcgtc gcggagcgga
     7921 agtacggtac aaagtcttta ttttcgcgca cgtaaccgcg gtaggtttca caggagatga
     7981 cggaaagctc atccataata tgacgccagc tgtctttcgg ttccggcggc ggcagcaggt
     8041 ttgcttccag aattgcgctg gtgtagagcg agaggctgct gacggtgact tccggcaggc
     8101 cgtatttgaa gcggatcatc tcgccctgct cggtcacgcg cagaccgcct ttcagactgc
     8161 ctggcggttg cgaaagcagc gccgcgtggg ctggcgcgcc gccacggcca atagagccgc
     8221 cgcggccgtg gaagagagtg agctcgatgc cggctttttc acaggttttg atcagggcgt
     8281 cctgcgcctg atactgcgcc catgacgcgg ccataacgcc ggcgtctttt gccgagtcgg
     8341 agtagccgat catgaccatc tgcttaccct gaatcagccc gcgataccag tcgatattca
     8401 acaactgggt catcacgtcg tcggcattgt tcaggtcgtc gagggtttca aacagcggtg
     8461 cgaccggcat ggcaaagccg atacctgcct ctttcagcag caaatgcaca gccagcacat
     8521 cagacggcgt tttcgccata gaaatcacgt aggcggcgat cgaccctttt ggcgcttcgg
     8581 caataacctt gcaggtttca agcacttcgc gggtatcgtt gctcggctcc cagttacgcg
     8641 gcagcagcgg acgtttggag ttcagctcgc ggatcaggaa ggcctgcttg tcggcttccg
     8701 accagctttc gtagtcgcca ataccgaggt agcgggtaat ttcgcccagc gcttcggtat
     8761 ggcgggtgct ctcctgacgg atatcaatac gcaccagcgg tacgccgaaa cacttcacgc
     8821 ggcggagcgt gtcgagtaac tcgccgttgg cgataatgcc catgccacag gcctgtaacg
     8881 actggtagca ggcgtacaga ggttcccaga gctgctcgtt ttgcgtcagc aggccagccg
     8941 gtttgggcag cttctcgcct ttcagacgcg cttccagcca ggactgggtc gccatcagac
     9001 gggcgcgcaa ttttttcatc aggtagcgat acggctcaga cgcgccttct tcgcccacta
     9061 acgccagcag ctccggcgtg gcgtcgacca tcgacagttc tgataccagg acatgaatgt
     9121 ctttcaggaa cagatcggtg gctttccagc ggcttaacaa gagtacgtgg cgggtgatct
     9181 ccgccgtcac gttcgggttg ccgtctcggt cgccgcccat ccaggaggta aaacgtaccg
     9241 gcacaaaatc caccggcaat ttgtagccga gattttcttc cagttgttca ttcagttcac
     9301 gcagatagtt aggtacgccc tgccacaggc tgttctcaac cacggcgaag ccccatttgg
     9361 cttcatccac cgggcttggg cgctgcttgc ggatctcatc cgtatgccag gattgggcaa
     9421 tcaactggcg caggcgacgc atcacctggt ggcgttcgta gtcggcgata tcggtattat
     9481 caagctgttt cagacagtta ttgatttccc ccatcttgtg aataagcgta cggcgggtaa
     9541 tttctgtcgg gtgggcggtt agcaccaact ccaaagacag cgactctacc gcttttttga
     9601 tggttgcgtc gttgaggtcc ggttggtttt tcagtttacg cagagtgtgg gcaatcactt
     9661 ccgggttgct ggcggcttcg ccttttggcg aaatgctgtg gtattgctcg gcagtattgg
     9721 ccaggttcag gaactgacta aacgcgcgcg caactggcag cagctcgtca ttagacaaat
     9781 tttgtagcgt ggtgagcagc tcctggcgat tagcttcatt gccggcgcgt gaagatttgg
     9841 atagcttacg gattgtttct acgcgatcaa gaatgtgctc tcccagcgca tccttgatgg
     9901 tttctcccag caccttgccg agcatactga cattactacg caacgcggaa tattgttcgt
     9961 tcatatgacc ccagacaccc catctttaat gtaattgccc tgtctctttc atgccacagc
    10021 ggcagtggct gcgctcgccc gtatgctagt tctgcggaat gggctcgttt gccgccttgc
    10081 tgtgacgtga aatttttctg actttgcttt ttagccgtct tttataaagc cacgtaaaac
    10141 ccgtggcgtc aattactgcg aaatcggttc agcaaacgaa aaaatggcgg taatttatta
    10201 aagttaattc gcatcgtgcc aaataagaaa tgcttatgaa catgtggcgt agagatgccg
    10261 gatggcgctg cgcttatgcg gcctacaaga cgggggaggc ccggtaaaca tcgtgtcacc
    10321 gggcaatatg cattaatgcc agcaaaaatg gtgtactacc tgggtaatca attcccgggt
    10381 tggcttaata aaacgcgttt cgagatattc atccggctga tgcgcctgat taattgagcc
    10441 cggaccaagc accagcgttg ggcataatgt ctgcataaac ggcgcttcag tacagtagtt
    10501 caccacgtcg gtttttgttc ccaacagttt ttctactact tcaaccagtt ggtggtccgg
    10561 tggacactcg taacctggaa tcggcggatg taattccgcc accgtcaggc ggcccggcca
    10621 gcgttcgctt accggagcca gcgcgtcgtt aagcagtcca ttaaggtcgt ttaacgtcat
    10681 gcccggcagt ggacgaatat ccatatgcaa ttcgcagcag gcgcagatac ggtttgaggc
    10741 atcgccgccg tggatatggc ccagattcag cgttggatac ggaacggtaa acgcctcgta
    10801 gtgataccgc gctttcagcg agtcacgcag ttgcatgata tggccaatcg catcgtgcat
    10861 cagttcaatg gcgttaaccc cacgcgccgg gtcgctggaa tgaccggact gccccaggac
    10921 gcgaacgaca ttagagatat gccctttgtg cgcgcgtatc ggttgcaacg acgtcggttc
    10981 gccaatgatc gcgcagtccg gacgtaatgc cgtggtttcg gaaaaataac gcgcccccgc
    11041 catgctggtc tcttcatcgg cggtcgccag aatgtagagc ggctttttca actttgtgac
    11101 gtcaacgtca cgtagcgcgt ccagaataaa agcgaagaag cctttcatat ccgcagtgcc
    11161 cagaccatag agcttattgt cgtgctcggt cagcgtgaac gggtcgcgcg tccagcgtcc
    11221 gtcatcaaag ggaactgtgt cggtatggcc ggtcagcagc aaaccgcccg cgccatgtcc
    11281 ggtgctggcg agcatattaa atttgtttcg cgttcctgga accggttgaa cctctacgtt
    11341 gaaaccaaga tcgctgaacc agcctgcaag caaagtgatt aaagacgcat tactttgatc
    11401 cagggattct tcggttgcgc ttatcgacgg tgtggcaatc agagcgcggt aaatctcgat
    11461 aaatggcggt aaaacgtttt tcattgttga cacacctcag gtcatgatag tatcaatatt
    11521 catgcattaa ttatgaataa aaatacatta acgttgagca taaaggaacc cgatgttgaa
    11581 tacgctgatt gtaggcgcta gcggttatgc gggcgcagag cttgtaagct acgtaaatcg
    11641 ccacccacat atgaccataa ccgctttgac cgtctcagcg caaagcaatg atgcaggaaa
    11701 gttaatttct gatttacatc cgcagttaaa agggattgtt gacctgccat tgcaaccgat
    11761 gtcggatgta cgtgacttta gcgcagatgt tgatgtggtg ttcctggcga cagcgcatga
    11821 agtgagccac gatctggcgc cgcagttttt acaggccgga tgcgtcgtat tcgatctttc
    11881 cggcgcgttt cgggtaaacg atcgcgcctt ctatgaaaag tattacggat ttactcatca
    11941 gtatcctgag ctgctggagc aggcggtgta cggtctggcg gagtggaatg ccgataaact
    12001 gaacacggcg aatctgattg cggttcctgg ttgctatcca accgcagcgc agttgtcgct
    12061 aaaaccgctg attgacggcg ggcttctcga tctgacgcag tggccggtaa ttaatgccac
    12121 cagcggggtg agcggcgcgg ggcgcaaggc ggcaatatcg aacagtttct gtgaagtgag
    12181 tttgcaaccg tatggtgtgt ttacgcatcg tcatcagccg gaaatcgctg cccatctggg
    12241 cgcggaggtc atcttcaccc cgcatctggg gaatttcccg cgcgggattc tggaaaccat
    12301 tacctgccgc ctgaaagcgg gagtaaccca tgcgcaggtc gccgacgtgt tgcaaaaagc
    12361 ctatggcgac aaaccgctgg tgcgcctgta tgacaaaggc gttccggcgt taaagaacgt
    12421 cgtcgggctg ccgttctgcg atattggttt tgccgtccag ggcgaacatc tgattgtggt
    12481 ggcaaccgaa gacaacttgt tgaaaggcgc agcggcgcag gcggtgcagt gcgctaatat
    12541 tcgttttggc ttcgctgaaa cgcagtctct tatttaaggg tgaaatgatg aatccattaa
    12601 ttatcaagct gggtggcgta ttactggata gcgaagaggc tctggaacgt ctttttaccg
    12661 cgctggtcaa ctatcgtgag tcccatcagc gtccgctggt gattgttcac ggcggcggtt
    12721 gcgtggtgga tgagctgatg aaagggctta atttgccagt gaaaaagaaa gacggcctgc
    12781 gcgtgacgcc tgccgatcag attggcatca ttaccggtgc gctggcggga accgctaaca
    12841 aaactctgct ggcttgggcg aagaaacacc atatcgcctc tgttggtctg tttctgggcg
    12901 atggcgacag cgtaaacgtg acccaactcg atgaagcgtt aggccacgtc gggctggcgc
    12961 aaccggggtc gccgaagctg attaacatgt tgctggaaaa cggctttctg ccggtggtca
    13021 gctccattgg cgtaacagac gacggccaac tgatgaacgt caacgccgat caggcggcaa
    13081 ccgcgctggc ggcgacgctg ggggccgatc tgatcctgct ttctgacgtg agcggtattc
    13141 tggacggcaa aggccagcgt atcgccgaaa tgacggcgtc caaagccgaa cagcttatcg
    13201 accagggcat tattaccgac gggatgattg tgaaagtgaa tgcggctctc gatgctgcgc
    13261 gggcgctggg tcgtccggtg gatattgctt cctggcgtca tgcggaacaa ttgccggcgc
    13321 tgtttaacgg cacgccgatt ggcacgcgta ttctggctta actatttgtt cgcccgatgg
    13381 cggctgcgcc ttatcgggcc tacgtgaaca gaaattgtaa gccggataag cgtagcgcta
    13441 tccggcagtg aaattcgaag aatttaagga agtctattat ggcactttgg ggtgggcgtt
    13501 ttacacaggc ggcagaccaa cggtttaaac aattcaatga ttcgttgcgc ttcgattacc
    13561 gtctggcgga gcaggatatt gtcggttctg tggcctggtc caaagcattg gtcacggtag
    13621 gcgtactgac tgccgatgag caacgacagt tggaagaagc gctgaacgtg ctgctggaag
    13681 aggttcgcgc gaatccgcag caaatcctgc aaagcgatgc ggaagatatc catagctggg
    13741 tggaaggtaa gctcatcgac aaagtgggtc agttgggtaa aaagctgcac accgggcgca
    13801 gccgtaacga tcaggtggcg acggacctga aactgtggtg caaagagacg gtgatggaac
    13861 tgctcaccgc taaccgccag ctacagagcg cgctggtgga aaccgcgcag gcgaaccagg
    13921 acgcggtaat gccgggatat acccatctgc aacgcgcgca gccagtgact ttcgcccact
    13981 ggtgtctcgc gtatgtcgaa atgctggcgc gcgatgaaag ccgcctgcag gacacgctta
    14041 aacgtctgga cgtgagtccg ctaggctgcg gcgcgttggc gggaacggcc tatgaaattg
    14101 accgtgaaca attggcaggc tggctgggct tcacgtctgc gacccgcaac agcctggaca
    14161 gcgtgtccga tcgtgaccac gtactggaac tgctttctga tgcggctatc ggcatggtgc
    14221 atctgtcacg tttcgcggaa gatctgattt tctttaattc tggtgaagcg ggctttgtag
    14281 agctttctga ccgcgtgact tccggttcat cgttaatgcc gcagaagaaa aacccggacg
    14341 cgctggagct gattcgcggt aagtgcggtc gcgtacaagg ggcgctaacc ggcatgatga
    14401 tgactttaaa aggtctgccg ctggcgtata acaaagatat gcaggaagac aaagaagggc
    14461 tgttcgatgc gctcgatatc tggcttgact gcctgcatat ggcggcgttg gtgctggacg
    14521 gtattcaggt gaaacgccca cgttgtcagg acgcggcgca acaggggtat gccaacgcca
    14581 ccgagctggc ggattacctg gtcgcgaaag gcgtgccgtt ccgcgaagcg caccatattg
    14641 tcggcgaagc tgtggtagaa gctattcgcc agggtaagcc gctggaagcg ttgccgctgg
    14701 ccgatttaca gaaattcagc cgcgtgattg gcgacgatgt gtatccgata ttgtctttgc
    14761 agtcgtgtct ggataaacgg gcggcaaaag gcggcgtttc tccgcagcag gtggcgcagg
    14821 ccatcgacga tgcgaaggtg cgcctcgcgt tgtaggcctt ataagcgtag cgccatcagg
    14881 taatactgcc cggccgagca tcagcgacgc cgggcttttt tacgcaaaaa aaagcggacc
    14941 agaggtccgc aaaagttcac gttggcttta gttatttcgg gttcgagaga taccctctga
    15001 acgggcggtg tcttcaaggg ttaaacgaga aaccgctccg ttctgtgatg tattattaat
    15061 cagaaaggtt gatagggata atcgttcgtt gctatgctac ctatcgccat gaactatcgt
    15121 ggcgacggag gatgaataat gaatattcgt gatcttgaat atctggtggc gttagccgaa
    15181 catcgccatt tccggcgagc ggcggactcc tgtcacgtca gccagccaac ccttagtggg
    15241 caaatacgta agctggaaga tgagctgggc gttatgctgc tggagcgtac gagccgtaag
    15301 gtgctgttta cccaggcggg cttactgctg gtggatcagg cgcgtaccgt actgcgtgag
    15361 gtcaaggtgc tcaaggagat ggcaagccaa caaggcgaga cgatgtccgg cccgctgcat
    15421 attggtttaa tcccaacaat tggtccctat ttgctgccgc ttatcattcc aatgttgcac
    15481 cagactttcc cgaagctgga aatgtatctg catgaggcgc aaacgcacca gctgttagcg
    15541 caactcgata gcggcaagct tgactgcgct attctggcgc tggtgaaaga gagcgaggcg
    15601 tttatcgaag tgccgctgtt tgatgagccc atgatgctgg ctatttatga agatcatccg
    15661 tgggcgaatc gcgatcgcgt gccgatgtcc gatctggcgg gcgagaaatt gctgatgctg
    15721 gaagatggcc actgtctgcg cgatcaggcg atggggttct gttttgaagc gggagcggat
    15781 gaagataccc atttccgggc gaccagtctg gaaacgctgc gcaacatggt ggcggcgggc
    15841 agtggtatta cactactccc cgcgctggcc gtaccgcagg agcgtaagcg cgacggcgtg
    15901 gtttatctgc catgcattaa gccggagccg cgtcgtaccg tggggctggt ttatcgcccg
    15961 ggatcgccgc tgcgtagccg ttatgagcaa ctggcagagg ccatccgtgg cgcaatggat
    16021 ggacatttcg acaaggcgtt aaaacaggcg gtttaagccg ttcaacgccg caacccgata
    16081 agcttccgcc atggttgggt agttaaaggt ggtgttaacg aagtattcga tggtgttacc
    16141 gccacctttc tgctccatga tcgcctggcc gatatgaata atttcggcgg cgcgttcgcc
    16201 aaagcagtga atccccagaa tttctttggt ttcgcggtga aagagaattt ttagcgtgcc
    16261 gacgttcatg ccgacgattt gcgctcgcgc cagatgctta aactgcgcgc ggcccacttc
    16321 gtaaggcact ttcattgccg ttaactgctg ctcggttttg ccgacagaac tgatttccgg
    16381 aatggtataa atcccggtgg ggatatcttc gataagatgc gcggtcgctt cgcctttcac
    16441 cagcgcctgc gctgcaatac gcccctgatc gtaggcggcg gaggccagac tgggatagcc
    16501 aatcacgtcg cccaccgcat agacgtgcgg cagggcggtc tggtacatac tgttgacttt
    16561 gagctgtcca cggctgtctg tttccagacc aatattctcc agcgccagcg aatcggtgtt
    16621 accggtacgg ccattagcat agagcaggca gtcagccttc agttttttgc cggatttcag
    16681 gtgcatgatg acgccatcat cgcagccttc gattttctca tactcttcat tgtggcgaat
    16741 aaccacgccg ctattccaga aatggtaaga gagagagtcg gacatctcct gatcgagaaa
    16801 ggccagcagg cgatcgcggg tgttgatcag atccactttc acatccatac cgcggaatat
    16861 ggacgcatat tcgcagccga taacgcctgc gccgtaaata ataacgtggc gcggttcatg
    16921 gtggagactc aggattgagt cgctgtcata aatgcgcgga tgcgagaaat ccacatcatt
    16981 gggatggtaa ggacgcgaac cacaggcaat aacaaatttt tctgccgtca gggtttcaac
    17041 cgtgccgtca tggcattcca gcgccagggt atgttcgtca ataaaatggg cgttgccctg
    17101 caagatttca cagtggttac gctcataaaa cccctgacgc atacgcgttt gttgattaat
    17161 cacgttatcg gcatgattaa ggatatcggc gaaagaagaa cgaaggagac gggagtggtc
    17221 gctatagagc gggttttgat taaattcaat aatgcggctg acggcgtggc gaagggcttt
    17281 ggatggaatg gtgccccagt gggtacatcc gccgccaacg ttatgataac gctcaatcac
    17341 cgcgacgcgt gctccttgct taaccagacc cattgcagcg ccttcaccgc cggggcctga
    17401 ccctatgacg actgcatcat aatcccagga atgtggcatg gtattactca cctgttttta
    17461 tacataaaat aaacacgatg ataacatttg cccagcttta acccaattat cgttgtgctt
    17521 ttttgcgaag ccggagcaca aactgtctgt aaacaatcat tcacaatcca gtgtgaaccc
    17581 gttactttta ttctctggta tagtgccgaa taaggcatat ggaaggattc agacattgtg
    17641 atgggtgtta gagcgcaaca aaaagaaaaa acccggcgtt cgctggtgga agccgcattc
    17701 agccaactga gcgctgagcg aagtttcgcc agcctgagtt tgcgtgaggt ggcgcgtgaa
    17761 gcgggcattg cgccaacgtc gttttaccgt cattttcgcg atgtcgatga actcggtcta
    17821 acgatggtgg atgaaagcgg tctgatgctg cgtcagttga tgcgtcaggc gcgacagcgt
    17881 atcgcgaaag gcggcagcgt cattcgcacg tcggtctcta catttatgga gtttatcggc
    17941 aacaatccca acgccttccg tctgttgttg cgcgagcgtt ccggcacttc cgcggcgttt
    18001 cgtgccgccg tcgcgcggga gattcagcat tttattgcgg aacttgccga ctatctggaa
    18061 ctcgaaaacc atatgccgcg cgcgtttact gaagcccagg ccgaagcgat ggtgactatt
    18121 gtctttagcg cgggcgcaga ggcgttggac atcggcgctg aacagcgtcg gcaattagaa
    18181 gagcggctgg tattgcaact gcgcatgatt gcgaaagggg cgtattactg gtatcgccgt
    18241 gagcaagaga aaatagcaca tcattccgaa taacgtgaag gacgagtaat gaaacagtca
    18301 ggtcaagata aaggtacgct gttgctggcg ctcatcgctg gcttatcgat taacggcaca
    18361 ttcgcggcgc tgtttagcgc tattgtgccg ttctccgtat tcccggttat ctcgctggta
    18421 ctgacggtat attgcctgca tcagcgctac caaaatcgta ctatgccggt aggtttgccg
    18481 gggttggccg ccgcttgttt cattcttggc gttttactgt atagcactgt cgtgcgtgca
    18541 gaatatccgg atatcggctc taatttcttc ccggcggtgc tgtcggtgat tctggtattc
    18601 tggattggct ttaagctgcg taaccgcaag caggacaccg cggagtagtg tgcgaatgcc
    18661 ggatggcggt ataaccggcc atccgacgta cattttacct tgcggtgagt aataccccgc
    18721 attccatatg atgcgtatac gggaactgat cgaatagcgc caggcgagac accgtgtgcg
    18781 tctggcttaa cgtttccagg tttttgcaca acgtttccgg attgcaggaa atgtacagaa
    18841 tacgtggata agcctgcacc attttttctg tttcgctgtc cagaccgctg cgcggcggat
    18901 cgacaaaaat ggtttcgcac tgatagcgct tcaggtcgat cccctgcagg cggttaaact
    18961 cacgaacgcc gttcatcgcc tgggtaaact cttccgccgc catgcgaata atttgcacat
    19021 tatcaatatg attagcggca atattgtact gtgcggcagc gacggacggt ttggcgattt
    19081 cggttgccag cacgcggtta aaattgcgcg ccagcgctaa agaaaaattg ccgttgccgc
    19141 aatacaactc aagcagatcg ccttttgagt ctttcgtcac ctccagcgcc cactctaaca
    19201 tctgaatatt catggcggcg tttggctgcg taaagctgtt ttcgacctgg cggtagatga
    19261 tctctttacc tgccacaggc agacgctcat caatataatc ctgatccaat tcgatcttgg
    19321 ttttagtagc ccggccaatc aggtgtacgt tcagaccttg cgcgcgtaaa gcatcgcgta
    19381 acgcagtggc ggcttcacgc cactcttcgt ccagcttctt atggtacagc aacgacacta
    19441 ccgcctggtt gctcaaggtc gtgagataat cgatctggaa cagcttatgc cgcagtgcat
    19501 gattatcgcg cacgccggca atcatcgcct tcattaaggt attaatcagt tggctggccg
    19561 ccgggaatgt gtcaacgcga atccggcttt tggtctgctg atcaaacata atgtggtaca
    19621 ggttatcgcc gtcatgccac aggcgaaatt ccgcacgcat acgatagtga ctgaccggcg
    19681 agcgaaatac ttccggaacc aggccagaaa acggcgccat catactctgc aagcgcgcca
    19741 ctttttcggc cagctgcgcc tcatactgtt ctgtcggaag atgttcgggg gtcatatcgc
    19801 atcctgaata ataaaagtac gcggggattg tagggattgc tcagtggatg tccagctatt
    19861 gatgatttct gatttgtgat gcgcggtctg gacagggtgt tgtgacagac ggtagcatcc
    19921 gtgggccggt cctgtgagtt aatagggaat ccagtgaaaa tctggagctg acgcgcagcg
    19981 gtaaggaaag gtgagatgag agcgtaagca gacactgcct ccggcgggaa gtcatcattt
    20041 ctgctatcca gtcaacggat aaccctccaa gcccgaagac ctgccggcta acgtcgcatc
    20101 tggtttttca tcatcgcgta ctatcgatga agcctgcggc atccttctta tattgtggat
    20161 gctttacaat gattaaaaaa gctacgctgc tgacggcgtt ctccgtcacg gccttttcag
    20221 cttgggcgca ggacactagc ccggatacac tggttgtcac cgccaaccgt tttcagcagc
    20281 cgcgcagcgc ggttctggcg cccgttacca tcgtgacgcg tcaggatatt gaacgctggc
    20341 aatcgacctc cgtaaatgat gttctacgcc gtttgcctgg cgtcgatatt gcgcagagcg
    20401 gcggcaccgg acaaaactcc tccattttca ttcgcggcac caactccagc catgtactgg
    20461 tattgattga cggcgtgcgt ctgaatttag caggcgtgag cgggtccgcc gatctcagcc
    20521 agttcccggt gtcgctggta cagcgcattg aatatattcg cggtccgcgt tccgctattt
    20581 atggttccga tgctatcggc ggcgtagtga atatcattac gacgcgcgat aacccaggca
    20641 cagaattaac cgctggatgg ggaagcaata gctaccagaa ttacgacctc tcgacgcaac
    20701 agcaacttgg cgaaaacacg cgggcgacgt tgatcggcga ttacgaatac accaaagggt
    20761 ttgacgtggt agcgaaaggc ggtaccggga tgcaggcgca gcctgaccgg gacggctttt
    20821 tgagtaaaac gctttatggc gcgttagagc ataccttttc tgatcgctgg agcggattcg
    20881 tgcgtggtta tggctacgat aaccgtaccg attacgacgc ctattactcg ccgggctcgc
    20941 cgctgattga tacacgcaaa ctttatagcc aaagctggga cgccgggctg cgctttaatg
    21001 gcgaacgtat tcagtctcag ctagtttcaa gctatagcca cagtaaagat tacaactatg
    21061 atccgcacta tggtcggtat gatacctccg ccacgctgga tgagatgaaa cagtacaatg
    21121 ttcaatggac caacagtgtg gttgtggggc acggtaatgt tggggcgggc gtagactggc
    21181 agaaacagac taccacgcca ggtaccggct atgtgcccga gggatatgac cagcgtaata
    21241 ccggggttta cctgacagga ttacaacagt tgggtgactt caccctggaa gcggcggcgc
    21301 gcagtgatga caactcccag tttggtcgtc acggtacatg gcaaaccagc gcgggatggg
    21361 agtttataga aggttatcgc tttattgcct cctacggaac ctcctacaaa gcgcctaatt
    21421 tgggccagct gtatgggtat tacggtaatc cgaacctgaa tcctgaaaag agtaaacagt
    21481 gggaaggcgc atttgaaggg ctcaccgctg gcgtcagctg gcgtatttca ggttatcgta
    21541 acgatattaa tgacatgatc gattatgacg atcatctgca aaaatattac aacgaaggta
    21601 aggcgcgtat taaaggtatt gaggcgacgg cgaatttcga taccggaccg ttaacgcata
    21661 cggtcagtta tgattacgtt gatgcgcgta atgcgattac cgatacgcca ttaccccggc
    21721 gttccaaaca gatggcaaaa tatcaacttg actgggacgt ttacgatttt gactgggggg
    21781 tgacatatca ataccttggt tcccgctatg attcggatta ctccgcttac ccataccgga
    21841 cagtaaaaat gggcggcgtc agtttatggg atcttacggt tgcatatccg gtcacctcac
    21901 atctgacagt tcgtggtaaa atagccaacc tgttcgacaa agattacgag acagtttatg
    21961 gctaccaaac tgcaggacga gaatacacct tgtctggcag ctacaccttc tgaaccacgt
    22021 cccaccgtgc tggtatttga ttccggcgtc ggtggattgt cggtctatga tgagattcgg
    22081 cggctcctgc cggatctcca ctatatatat gctttcgata acgtggcttt cccctacggg
    22141 gaaaagagcg aaacgtttat cgttgagcgc gttgtcgaga ttgtgactgc ggtacagcag
    22201 cgctatcccc tttcactggc ggtgattgcc tgtaataccg ccagtacggt ctcacttccc
    22261 gcattacgtg aaaagtttgc cttcccggtg gtgggcgttg tgcctgcgat taaaccagcg
    22321 gcgcggctta ccgccaatgg cgtcgtcggg ctactggcga cgagagccac ggtcaaacgt
    22381 ccttatactc acgagctgat tgcgcgcttc gccaatgaat gtcagatagc gatgttgggg
    22441 tcggcagaac tggtggaact ggcggaagct aaattacatg gcgattcggt atcgctggaa
    22501 gaactgcgcc gtatattacg cccatggcta cgaatgccgg agccgcctga cacggtcgtt
    22561 ctggggtgta cgcatttccc tctattacgg gacgagcttt tgcaagtcct gcccgaaggg
    22621 acgcggttag tggattccgg cgcggcgata gcgcgtcgta cagcctggct gttggaacat
    22681 gaagcgccgg atgcgaaatc aaccgatgcc aatattgctt attgcatggc aatgacgcca
    22741 ggagctgaac aattattacc cgttttacag cgttatggct ttgaaacgct cgaaaaactg
    22801 gcggtttaat ggcgttttgg gtaaatacca ggcacttga
//
LOCUS       DAJVSD010000047        22329 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.047, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000047 DAJVSD010000000
VERSION     DAJVSD010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 22329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22329
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.047"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            36..1637
                     /gene="aceB"
                     /locus_tag="OQP62_001525"
     CDS             36..1637
                     /gene="aceB"
                     /locus_tag="OQP62_001525"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase A"
                     /protein_id="HCS1721109.1"
                     /translation="MNPQATTTDELTFTRPQGELEKQVLTAEAVEFLTELVTRFTPKR
                     NKLLAARIQQQQDIDNGKLPDFISETTSIRESNWQIRGIPADLQDRRVEITGPVERKM
                     VINALNANVKVFMADFEDSLAPDWNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPDP
                     AVLICRVRGLHLPEKHVTWRGEAIPGSLFDFALYFFHNYKALLAKGSGPYFYLPKTQA
                     WQEAAWWSEVFSYAEDRFNLPRGTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGR
                     WDYIFSYIKTLKNHPDRVLPDRQVVTMDKPFLSAYSRLLIKTCHKRGAFAMGGMAAFI
                     PSKDVERNNQVLAKVKADKALEANNGHDGTWIAHPGLADTAMAVFNEVLGEYKNQLFI
                     TRDEDAPITAEQLLEPCEGERTEAGMRANIRVAVQYIEAWIPGNGCVPIYGLMEDAAT
                     AEISRTSIWQWIHHEKTLSNGKPVTKALFREMLAEEMRVIQDELGEHRYSSGRFDDAA
                     RLMEQITTSDDLIDFLTLPGYRLLA"
     gene            1669..2973
                     /gene="aceA"
                     /locus_tag="OQP62_001526"
     CDS             1669..2973
                     /gene="aceA"
                     /locus_tag="OQP62_001526"
                     /EC_number="4.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase"
                     /protein_id="HCS1721110.1"
                     /translation="MKTRTQQIEELQKEWTQPRWEGITRPYSAEEVVKLRGSVNPECT
                     LAQLGAAKMWRLLHGEAKKGYINSLGALTGGQALQQAKAGIEAIYLSGWQVVADANLA
                     SSMYPDQSLYPANSVPAVVDRINNTFRRADQIQWASGIEPNDPRYVDYFLPIVADAEA
                     GFGGVLNAFELMKSMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARL
                     AADVMGVPTLVIARTDADAADLITSDCDPYDSGFITGERTSEGFYRTHAGIEQAISRG
                     LAYAPYADLVWCETSTPDLELARRFADAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIA
                     SFQQQLSDMGYKYQFITLAGIHSMWFNMFDLAHAYAQGEGMKHYVEKVQQPEFAAAKD
                     GYTFVSHQQEVGTGYFDKVTTIIQGGASSVTALTGSTEESQF"
     gene            3074..4855
                     /gene="aceK"
                     /locus_tag="OQP62_001527"
     CDS             3074..4855
                     /gene="aceK"
                     /locus_tag="OQP62_001527"
                     /EC_number="2.7.11.5"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional isocitrate dehydrogenase
                     kinase/phosphatase"
                     /protein_id="HCS1721111.1"
                     /translation="MPRGLELLIAQTILQGFDAQYGRFLEVTSGAQQRFEQADWHAVQ
                     QAMKSRIHLYDHHVGLVVEQLRCITDGKSTDADFLLRVKEHYTRLLPDYPRFEIAESF
                     FNSVYCRLFDHRSLTPERLFIFSSQPERRFRTIPRPLAKDFFPDHGWEPLLMRILSDL
                     PLCLPWQNKSRDIRYIIAHLTETLGEDALPRCHVQVANELFYRNKAAWLVGKLTTPDG
                     TLPFLLPIHRTDEGELFVDTCLTTTAEASIVFGFARSYFMVYAPLPAALVEWLREILP
                     GKTTAELYMAIGCQKHAKTESYREYLCYLAESDEKFIEAPGIRGMVMLVFTLPGFDRV
                     FKIIKDKFAPQKEMSAAHVRACYQLVKEHDRVGRMADTQEFENFVLDKRQIDPALMAL
                     LRQEAPEKITDLGEHIVIRHLYIERRMVPLNIWLEQVEGQQLRDAIEEYGNAIRQLAA
                     ANIFPGDMLFKNFGVTRHGRVVFYDYDEICYMTEVNFRDIPPARYPEDELASEPWYSV
                     SPGDVFPEEFRHWLCADPRIGPLFEEMHADLFRADYWRALQTRIKEGHVEDVYAYRRR
                     QRFSVRYETDRRPDKAFAPPSGNVRRA"
     gene            complement(4900..5724)
                     /gene="iclR"
                     /locus_tag="OQP62_001528"
     CDS             complement(4900..5724)
                     /gene="iclR"
                     /locus_tag="OQP62_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate bypass operon transcriptional
                     repressor IclR"
                     /protein_id="HCS1721112.1"
                     /translation="MVAPVPAKRGRKPAATTAPVTGQVQSLTRGLKLLEWIAESNGSV
                     ALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAVGAHAFIVGSSFLQSRNLL
                     AIVHPILRKLMEDSGETVNLAVLDQSDHQAIIIDQVQCTQLMRMSAPIGGKLPMHASG
                     AGKAFLSQLSEEQVTSLLHRKGLHAYTHATLVSPLHLKDDLAQTRKRGYSFDDEEHAL
                     GLRCVASCIYDEHREPFAALSISGPCSRITDDRVTELGAMVIKAAKEVTLAYGGFR"
     gene            6028..9711
                     /gene="metH"
                     /locus_tag="OQP62_001529"
     CDS             6028..9711
                     /gene="metH"
                     /locus_tag="OQP62_001529"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HCS1721113.1"
                     /translation="MSSKVEQLRAQLNERILVLDGGMGTMIQSYRLHEEDFRGERFAD
                     WPCDLKGNNDLLVLSKPEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYRMESLSAE
                     INYAAAKLARACADEWTARTPEKPRFVAGVLGPTNRTASISPDVNDPAFRNITFDQLV
                     AAYRESTKALVEGGADLILIETVFDTLNAKAAVFAVKEEFEALGVDLPIMISGTITDA
                     SGRTLSGQTTEAFYNSLRHAEALTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAG
                     LPNAFGEYDLDADTMAKQIREWAEAGFLNIVGGCCGTTPEHIAAMSRAVAGLSPRQLP
                     DIPVACRLSGLEPLNIGDDSLFVNVGERTNVTGSAKFKRLIKEEKYSEALDVARQQVE
                     SGAQIIDINMDEGMLDAEAAMVRFLSLIAGEPDIARVPIMIDSSKWEVIEKGLKCIQG
                     KGIVNSISMKEGVEAFIHHAKLLRRYGAAVVVMAFDEQGQADTRERKIEICRRAYKIL
                     LEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVS
                     FSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQLAIYDNLPAELRDAVEDVILNRR
                     DDGTERLLDLAEKYRGSKTDEAASAQQAEWRSWDVKKRLEYSLVKGITEFIEQDTEEA
                     RQQAARPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASK
                     EKGSSNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAREVNA
                     DLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVY
                     VQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHARKKPRTPPVTLEAARDNDL
                     AFDWERYTPPVAHRLGVQEVEASIETLRNYIDWTPFFMTWSLAGKYPRILEDEVVGVE
                     AQRLFKDANDMLDKLSAEKLLNPRGVVGLFPANRVGDDIEIYRDETRTHVLTVSHHLR
                     QQTEKVGFANYCLADFVAPKLSGKADYIGAFAVTGGLKEDALADAFEAQHDDYNKIMV
                     KAIADRLAEAFAEYLHERVRKVYWGYAPNESLSNDELIRENYQGIRPAPGYPACPEHT
                     EKGTIWQLLDVEKHTGMKLTESFAMWPGASVSGWYFSHPESKYFAVAQIQRDQVTDYA
                     FRKGMSVEDVERWLAPNLGYDAD"
     gene            9968..11599
                     /locus_tag="OQP62_001530"
     CDS             9968..11599
                     /locus_tag="OQP62_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HCS1721114.1"
                     /translation="MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRTVLSRSVEKK
                     PLAFCAGIGVTALVQSSNATTLLVTSFVAQDLVALTPALVIVLGADVGTALMARILTF
                     DLSWLSPLLIFIGVIFFLGRKQSRAGQLGRVGIGLGLILLALELIVQAVTPITQANGV
                     QVIFASLTGDIMLDALIGAMFAIISYSSLAAVLLTATLTAAGIISFPVALCLVIGANL
                     GSGLLAMLNNSAANAAARRVALGSLLFKLIGSLVILPFVHPLANLMDELPLPKSELVI
                     YFHVFYNLVRCLAMVPFAELMARFCKRIIRDEPELDTHLKPKHLDVSALDTPTLALAN
                     AAREVLRIGDAMEQMMEGLKKVMHGEPREEKALRKLADDVNVLYTAIKLYLARMPKDE
                     LAAEESRRWAEIIEMALNLEQASDIIERMGSEIADKSLAARRAFSEEGLKELDALYDQ
                     LLSNLQLAMSVFFSGDVTSARRLRRSKHRFRILNRRCSHAHVDRLHQQNVQSIETSSL
                     HLGLLGDMKRLNSLFCSVAYSVLEQPDQDEERGEY"
     gene            complement(11689..12378)
                     /gene="pepE"
                     /locus_tag="OQP62_001531"
     CDS             complement(11689..12378)
                     /gene="pepE"
                     /locus_tag="OQP62_001531"
                     /EC_number="3.4.13.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepE"
                     /protein_id="HCS1721115.1"
                     /translation="MELLLLSNSTLPGKAWLEHALPLIANQLNGRRSAVFIPFAGVTQ
                     TWDEYTDKTAEVLAPLGINVTGIHRVADPLAAIEKAEIVIVGGGNTFQLLKESRERGL
                     LAPVADRVKRGALYIGWSAGANLACPTIRTTNDMPIVDPNGFDALDLFPLQINPHFTN
                     ALPEGHKGETREQHIRELLVVAPELTVIGLPEGNWIQVSNGQAVLGGPNTTWVFKAGE
                     EAVALEAGHRF"
     gene            12450..12551
                     /locus_tag="OQP62_001532"
     CDS             12450..12551
                     /locus_tag="OQP62_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721116.1"
                     /translation="MAHDVARVTGNARSLKVTPGQICHLVSPEKLQV"
     gene            12586..13125
                     /locus_tag="OQP62_001533"
     CDS             12586..13125
                     /locus_tag="OQP62_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2058 domain-containing protein"
                     /protein_id="HCS1721117.1"
                     /translation="MAKLTLQEQLLQAGLVTSKKMAKVQRTAKKSRVQAREAREAVEE
                     NKKAQLERDKQLSEQQKQAVLAKEFKAQVKQLIEMNRINVSKGDIGFNFTDNNVIKKI
                     DVDKLTQTQLINGRLAIARLVINNSGECEYAIIPASVADKIAQRDADSIVVNSALSQE
                     EQDEDDPYADFKVPDDLMW"
     gene            13172..14041
                     /gene="rluF"
                     /locus_tag="OQP62_001534"
     CDS             13172..14041
                     /gene="rluF"
                     /locus_tag="OQP62_001534"
                     /EC_number="5.4.99.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2604) synthase RluF"
                     /protein_id="HCS1721118.1"
                     /translation="MLTDTSTRLNKYISESGICSRREADRFIEQGNVFINGKRAAIGD
                     QVVAGDVVKVNGRLIEPREADDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRIFP
                     IGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPIL
                     GTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEYFGYEVTKLERTRIMNVSLSGIPL
                     GEWRDLTDDELIDLFKLIEGSSSEAKPKAKAKPKTAGIKRPVVAIEKSNEKARPASSG
                     KRFTSPGRKKKGR"
     gene            complement(14038..14310)
                     /locus_tag="OQP62_001535"
     CDS             complement(14038..14310)
                     /locus_tag="OQP62_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3811 domain-containing protein"
                     /protein_id="HCS1721119.1"
                     /translation="MALPRITQKEMTEREQRELKTLLDRARIAHGRPLTNSETNSVKK
                     EYIDKLMALREAEAKKARQLKKKQAYKPDTEASFSWSANTPTRGRR"
     gene            complement(14373..15131)
                     /locus_tag="OQP62_001536"
     CDS             complement(14373..15131)
                     /locus_tag="OQP62_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001068167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1721120.1"
                     /translation="MNPIKRRKHILDELNKFGEVTVIKLSEMLNVTSETIRRDLSLLE
                     SEGKITKIHGGAVKKQVVQEDAFSARIEAHREEKIAIGKLAAEMISERDTLFIDSCTT
                     NLILAEQLPPLAFSVITNSALIADKIKEHNLQARVYVLGGEYDYHFRANLGVSVCQQI
                     NAIHADICFIGAGGISPQHGVLVKSFEEAYVAKAMIAMSKKSVILADHTKFGQDGVMC
                     IASVKEIDNIITDKGFTSTGYTPQDFAGKLRIAD"
     gene            complement(15118..15981)
                     /locus_tag="OQP62_001537"
     CDS             complement(15118..15981)
                     /locus_tag="OQP62_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000924639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HCS1721121.1"
                     /translation="MLLITDLDGTLLTSQKTISPRTRQALIAFRQDGSLLAACSARPV
                     SSMVRLLHQQQVDRLFSWCAGFNCGHLLEMAGQRIIHAAPLSATDLWNIDQHISLSRY
                     HHHFFSAEAIHHRDDRLIAPWTTYEARLFGLPLITETTENIFNRRDIYKITLVAVSSE
                     IDTLCTEVNNHLPYGYYAVVTGENYIDIQRTDVNKGCIIEQLIHYLNISSDKVVVIGD
                     QQNDVSMFAAAGISIAMGNAPDAVKRQADYVTATNDEEGIVHALEWLRCLTHPVTMRQ
                     RLTAAKDNESN"
     gene            complement(15998..16837)
                     /locus_tag="OQP62_001538"
     CDS             complement(15998..16837)
                     /locus_tag="OQP62_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000472335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine biosynthesis protein"
                     /protein_id="HCS1721122.1"
                     /translation="MFKGDMNKKRAKALQKVKEAITLHGGQTILSTGITGDDARLAKA
                     VCEAGVKLLEPNHPALALARGHKGVSNMHAAEQIRHEITNSQMAEAVHGVRNVVPDDI
                     FITVGIAGGFTETLPVPLSETEILEIARAGADGLHTHKSDWDDLQDIVNLAHQYGLTV
                     DAYIGHPDDLHTFGIPARTPEEVASVAKRMQDIGVDMIGLMTGMSYEGVAAGDIPQMI
                     KDRLRALVGAVDVPTLAEGGINLANAKAFKDTGVNILVVGTAIDNMVCNAAKEAVTPF
                     IVH"
     gene            complement(16861..18441)
                     /locus_tag="OQP62_001539"
     CDS             complement(16861..18441)
                     /locus_tag="OQP62_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000716843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter"
                     /protein_id="HCS1721123.1"
                     /translation="MAIIGSSGGNLYNLGGAEPEKLLQEIYQQCEAAGVNVAAVQFIA
                     AEASMDVAKPDTPASVYALTTENQQKPQRIFQGKLSEVNTSVVESDRQIAEMIRRGEI
                     DGIVVMSADPVKANQAVFAAAVEMKTPIVGTGGTSMALVAAKGANVVATSGTTGTTSR
                     TRAVSFVASLCKHWGIKYKPQLGSASPSQSGSGKSLLKRFNIRSIMIPALPGFIAMAI
                     VLALSHIPGLEKLNDIFEILLKGLPVLVAVLAAKQISELDEVSIVAGVVAGVLSVEGG
                     LIGGIIGGVMAGIFVRWLFELCLNWRFPMTTVNIVAGGISGLAAGLIMHYLLSPLALS
                     AGNYIKLAIESTLAFSPILAGLLAGLVIWPAILGGVYHAVILPLVLLEMEKSGVSFLG
                     AVDMVGLVMVAAGINLANVIAPREKSEAAVATPGLLINLGFGTFVESAYPFMFANKIV
                     FGSAIFWAGMGGMMLGFFNVKGVAYVPAFASPFLSSNALQMAIVMIATMAMTCLTTII
                     ANRFKPVVQSESTTTAVN"
     gene            complement(18847..20196)
                     /gene="lysC"
                     /locus_tag="OQP62_001540"
     CDS             complement(18847..20196)
                     /gene="lysC"
                     /locus_tag="OQP62_001540"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-sensitive aspartokinase 3"
                     /protein_id="HCS1721124.1"
                     /translation="MTEIVVSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGI
                     TNLLVALAEGMEPGERFATLDAIRKIQFDILDRLRHPNVIREEIERLLENITILAEAA
                     SLATSAALTDELVSHGELMSTLLFVEILRERDVQAHWFDVRKVMRTSDRFGRAEPDVA
                     ALAELAAQQLLPRLSETLVITQGFIGSESKGRTTTLGRGGSDYTAALLAEALHAARVD
                     IWTDVPGIYTTDPRVVPVAQRIDEIDFEEAAEMATFGAKVLHPATLLPAVRSDIPVFV
                     GSSKDPQAGGTLVCNKTQNPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILAR
                     HNISVDLITTSEVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALI
                     GNNLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGDDAEKVVQKLHQNLFE"
     gene            20585..22234
                     /gene="pgi"
                     /locus_tag="OQP62_001541"
     CDS             20585..22234
                     /gene="pgi"
                     /locus_tag="OQP62_001541"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HCS1721125.1"
                     /translation="MKNINPTQTSAWQALQKHYDEMKDVTIAELFANDSDRFAKFSAT
                     FDDLMLVDFSKNRITEETLAKLQDLAKETDLAGAIKSMFSGEKINRTEDRAVLHVALR
                     NRSNTPIIVDGKDVMPEVNAVLEKMKTFSQAIISGQWKGYTGKAITDVVNIGIGGSDL
                     GPFMVTEALRPYKNHLTMHFVSNVDGTHIAEVLKKVNPETTLFLVASKTFTTQETMTN
                     AHSARDWFLKSAGDEKHVAKHFAALSTNAKAVGEFGIDTANMFEFWDWVGGRYSLWSA
                     IGLSIILSVGFDNFVELLSGAHAMDKHFSTTPAEKNLPILLALIGIWYNNFFGAETEA
                     ILPYDQYMHRFAAYFQQGNMESNGKYVDRNGNAVDYQTGPIIWGEPGTNGQHAFYQLI
                     HQGTKMVPCDFIAPAITHNPLSDHHQKLLSNFFAQTEALAFGKSREVVEQEYRDQGKD
                     PAQLEHVVPFKVFEGNRPTNSILLREITPFSLGALIALYEHKIFTQGVILNIFTFDQW
                     GVELGKQLANRILPELGDDKAISSHDSSTNGLINRYKAWRA"
BASE COUNT         5244 a         5836 c         6127 g         5122 t
ORIGIN      
        1 gggatgtatc tggatcaaca acgaggagct gcatgatgaa tccacaggca accacaactg
       61 atgaattaac ctttaccagg ccgcaaggcg agctggaaaa gcaagtcctg accgctgagg
      121 cagtcgagtt tttgacggag ttagtcaccc gttttacgcc aaaacgcaat aaactcctgg
      181 ctgcacgtat ccagcaacag caggatattg ataacggtaa gttgcctgat tttatttcgg
      241 aaaccacttc cattagagaa agtaattggc agattcgtgg tattccggcg gatttacagg
      301 atcgccgagt agaaattacc gggccggttg aacgtaaaat ggtgattaat gccctgaacg
      361 caaatgtgaa agtgtttatg gcggattttg aagactcgct ggcgccggac tggaataaag
      421 ttattgatgg tcaaatcaac ctgcgtgatg cggtgaacgg caccattagc tataccaacg
      481 aagccggaaa aatctatcag ctcaagcccg atccggccgt attgatttgt cgtgtacgcg
      541 gtctacatct gccagaaaaa catgttacct ggcgggggga agccattccc ggcagcctgt
      601 ttgattttgc tctgtacttt ttccacaact acaaagcgct gctcgctaaa ggtagcggcc
      661 cgtattttta cctgccgaaa acgcaagcct ggcaggaggc agcctggtgg agtgaagttt
      721 tcagctacgc cgaagaccgc ttcaatctac cgcgcggtac gatcaaagcg accctgttga
      781 ttgaaacgct gcctgctgtt ttccagatgg atgagattct tcatgcgttg cgtgatcata
      841 tcgtcggtct caactgtggt cgctgggatt atattttcag ctatatcaaa acgttgaaaa
      901 atcacccgga tcgcgtcctg ccggacaggc aggtggtaac gatggacaaa ccgtttctga
      961 gtgcctactc gcgcctgctg atcaaaacct gtcacaagcg cggcgcgttc gcgatgggcg
     1021 gtatggcggc gtttatcccg agcaaagacg ttgaacgcaa taatcaggtc cttgccaaag
     1081 tgaaagcgga taaagcgctg gaagcgaaca acggccacga cggcacgtgg attgcgcatc
     1141 ccgggttggc ggatacggca atggccgtct ttaacgaggt actgggcgag tacaaaaatc
     1201 agctgttcat tacccgtgat gaagatgcgc cgattaccgc tgagcagtta ctggagccat
     1261 gtgaaggcga acgcacagaa gcgggaatgc gcgccaatat tcgcgtggca gtgcagtaca
     1321 ttgaagcgtg gatccccggc aatggctgtg taccgattta cggtctgatg gaggatgccg
     1381 cgacggcgga aatctcacga acctctatct ggcagtggat tcaccatgag aaaacactga
     1441 gcaatggaaa acccgtaacg aaagcgcttt tccgcgaaat gttggcggaa gagatgcggg
     1501 taatccagga cgaactgggc gagcaccgct acagcagcgg gcgcttcgac gatgccgcac
     1561 gtctgatgga gcaaatcacc acatcagatg acttaatcga cttcctcacc ctgccgggct
     1621 atcgcttact ggcttaattc accacataac aatatggagc atctgcacat gaaaacccgt
     1681 actcaacaaa tcgaagaatt acagaaagag tggacacaac cgcgctggga aggcatcacc
     1741 cgcccgtaca gcgcggagga ggtggtgaaa ttacgcggct cggttaaccc ggaatgcacg
     1801 ctggcgcagc tcggcgccgc gaaaatgtgg cggctgttgc acggtgaagc gaaaaaaggc
     1861 tatatcaaca gcctgggcgc gctgactggc ggtcaggcgc tgcagcaggc gaaagccggt
     1921 attgaggcga tttatctttc aggctggcag gtggtggcag atgccaacct ggcatccagc
     1981 atgtatccgg atcaatcgtt gtacccggca aactctgttc cggcggtagt ggatcggatc
     2041 aacaacactt tccgtcgtgc agatcagatc cagtgggcat ccggtattga acccaacgat
     2101 ccgcgctatg tggattactt cctgccgatc gttgctgatg cggaagccgg ttttggcggc
     2161 gttctgaatg ccttcgaact gatgaaatcg atgattgaag ccggtgcagc ggccgttcac
     2221 ttcgaagatc agctggcgtc ggtgaagaaa tgcggccata tgggcggcaa ggtgctggtc
     2281 cccacgcagg aggcgattca gaaactggtt gctgcgcgtc tggccgctga tgtgatgggc
     2341 gtcccgacgc tggtgattgc gcgtaccgat gcggatgcgg cagatctgat cacctccgac
     2401 tgcgatccct atgacagcgg ttttattacc ggcgaacgca ccagcgaagg tttttaccgc
     2461 acccatgcgg gcattgagca ggcgatcagc cgcggtctgg cgtatgcccc gtatgccgat
     2521 ctggtatggt gcgaaacttc tacgccggat ctcgaactgg cgcgtcgttt tgccgatgct
     2581 atccacgcga agtatccggg caaactgctg gcctataact gttcgccatc cttcaactgg
     2641 cagaagaatc tggacgacaa gaccattgcc agcttccagc agcagttgtc ggacatgggt
     2701 tacaaatacc agtttattac cctggcgggc atccacagca tgtggttcaa catgttcgac
     2761 ctggcgcatg catacgctca gggtgagggc atgaaacact atgttgagaa ggttcaacaa
     2821 cccgagttcg ccgcagcgaa agacggttac acctttgttt cccaccagca ggaagtgggt
     2881 actggttact tcgacaaagt caccaccatt attcagggcg gcgcgtcatc cgttaccgcg
     2941 ttaacgggtt ccaccgaaga atcgcagttt tgattgatgc ccggtggcgc tgcgcttacc
     3001 gggcctacag atagcgtagg ccggataagc gaacgcgcca tccggcatga tgtggtgccg
     3061 gatgagggaa aaaatgccgc gtggcctgga attactgatt gctcaaacca tcctgcaagg
     3121 ctttgacgcg cagtatggtc gatttctgga agtgacttcc ggcgcgcagc agcgttttga
     3181 acaggccgac tggcacgccg tccagcaggc gatgaaaagc cgtatccacc tctatgatca
     3241 tcatgtgggt ctggtggtgg agcaactgcg ctgtattacc gatggcaaaa gtaccgacgc
     3301 ggatttcctt ttacgcgtta aagagcatta cacccggctg ttgccggatt acccgcgctt
     3361 cgagattgcg gagagctttt tcaactccgt ttattgccgg ttatttgacc accgctcgtt
     3421 aacacccgag cggttgttta ttttcagttc gcaaccggag cgtcgcttcc gtactatccc
     3481 gcgcccgctg gccaaagact tctttcccga tcacggttgg gagccgctgt tgatgcgcat
     3541 actcagtgac ttaccgctgt gtctaccctg gcagaataaa agccgggata tccgctatat
     3601 tatcgcgcac ctgactgaaa cactgggcga ggacgcgcta cctcgctgcc atgtccaggt
     3661 ggcgaacgag ttgttttacc gtaataaagc ggcctggctg gtaggtaaat taaccacacc
     3721 tgacggtacg ctgccgtttt tattgccgat tcatcgcact gatgaggggg aactgtttgt
     3781 cgatacctgc ctgaccacca cggcagaagc gagcattgtg tttggttttg cccgctctta
     3841 ttttatggtg tatgcgccgc tgcctgccgc gctggttgag tggttgcgtg aaatcctgcc
     3901 gggtaaaacc actgccgaac tgtatatggc gattggctgc cagaaacatg cgaaaaccga
     3961 aagctaccgc gaatatttat gttatctggc tgaaagcgat gagaaattca ttgaggcgcc
     4021 tggaatccgc ggcatggtga tgctggtatt taccctgcca ggcttcgacc gggtatttaa
     4081 aatcattaaa gacaaattcg ccccgcagaa agagatgtct gccgcccatg tgcgtgcctg
     4141 ttatcaactg gtaaaagagc atgatcgcgt cggtcgtatg gcggataccc aggagtttga
     4201 gaatttcgta ctggataaac ggcaaatcga tccggcgctg atggcgctgt tacgacaaga
     4261 agcgccagag aagattaccg atcttgggga acatatcgtc attcgccatc tctatattga
     4321 acgtcgcatg gtgccgctca atatctggct ggaacaggta gaaggccagc agttgcgcga
     4381 tgcgatagaa gaatatggta atgcgattcg ccagcttgcc gccgctaata ttttccccgg
     4441 cgatatgttg tttaaaaact ttggcgttac ccgtcatggt cgcgtggtgt tctacgacta
     4501 cgatgaaatt tgctacatga cggaagtgaa tttccgcgat attccgccag cgcgttatcc
     4561 ggaagacgaa ctggccagcg aaccctggta tagcgtctcg ccgggtgatg ttttcccgga
     4621 ggagtttcgc cactggctgt gtgccgatcc gcgtatcggg ccattgtttg aagagatgca
     4681 tgccgacctg tttcgcgccg attactggcg cgcgctacag acgcgtatta aagaagggca
     4741 tgtagaagat gtgtatgcct atcgtcgccg ccagcgcttt agcgtgcgtt atgaaaccga
     4801 ccgtaggccg gataaggcct ttgcgccgcc atccggcaat gtacgccgtg cctgatggcg
     4861 ctgcgcttat caggcctaca aatcagttcc aacccttgct tatctaaacc caccataggc
     4921 cagcgtcacc tctttcgccg ctttaatcac catggcgcca agttcggtga cgcgatcgtc
     4981 ggtaatgcgt gagcaggggc cggaaataga gagggccgca aacggttcgc ggtgttcgtc
     5041 ataaatacac gaggccacgc agcgcagacc gagcgcatgt tcttcgtcgt caaaggaata
     5101 gccgcgcttg cgtgtttggg cgaggtcatc tttcagatgc agcggcgaca ccagcgtcgc
     5161 atgggtataa gcgtgcaacc ccttgcggtg cagcagactg gtaacctgtt cctcactgag
     5221 ctgtgataaa aacgccttgc ccgcgccaga ggcgtgcatg ggcagcttgc cgccaatagg
     5281 ggcggacatg cgcatcaatt gtgtgcactg cacctggtcg ataataatag cctgatggtc
     5341 gctctggtcg agtacggcaa ggtttaccgt ttcgccggag tcctccatca gcttgcgcaa
     5401 aatcggatgg acaatcgcca gcagattacg gctctgtaag aagctgctac cgacgataaa
     5461 cgcgtgtgcg cctacggccc agtggcccag ctcaccaacc tggcggacaa aaccctgttg
     5521 ctgcatggtg gtgagtagac ggtgagtcgt ggaattaggc aaacccgcct gttgcgccag
     5581 ttcggtcagc gcgacgctgc cgttggactc ggcaatccac tccagcagct tcagaccgcg
     5641 agttaaagac tgaacctgcc cggttacggg tgcagtggta gcggcaggtt ttctcccgcg
     5701 ttttgcggga acaggggcaa ccatggcaga ctcctttttc tgtatcgtgg aaatcatttt
     5761 cgttttattc aattataatg caagagttcc tgaactgatc ggatgagtga catcacagga
     5821 tgcccgatgg cgctgcgctt atcaggccta cgctttggga gccgccaaag taatttgtag
     5881 actgataagg cgcttgcgcc gccatccggc aaagcgacag aagtgggtgg caagctgaac
     5941 atgtctcatg ttgcccgttg ttctcttttc cgccagcacg ctttgtgcca gtatggctcg
     6001 ttacgtggag cgttgtcggg agcgagtgtg agcagcaaag ttgaacaact gcgtgcgcag
     6061 ttaaatgaac gtattctggt gctggacggc ggtatgggca ccatgatcca gagctatcgt
     6121 ctacatgaag aagatttccg cggggagcgc tttgccgact ggccctgcga cctgaaaggc
     6181 aacaatgacc tgctggtcct cagcaagccg gaggtgatcg ccgctatcca caacgcctac
     6241 tttgaggctg gcgcggatat catcgaaacc aacaccttta actcgacaac cattgcgatg
     6301 gcggattacc ggatggaatc cctgtcggcg gaaattaact atgcggcggc caaactggcg
     6361 cgcgcctgcg ccgatgaatg gacggcgcga acaccagaaa aaccacgctt tgttgcgggc
     6421 gtgcttggtc caactaaccg cacggcctcc atttcgccgg acgtcaacga cccggcgttt
     6481 cgtaatatca ccttcgatca gctggtggcg gcctaccgtg aatccaccaa agcgctggtg
     6541 gaaggcgggg cggacctgat cctgattgaa actgtcttcg acaccctcaa cgccaaagcg
     6601 gcggtgtttg cggtgaaaga agagtttgaa gcgctgggcg ttgatctgcc gatcatgatt
     6661 tccggcacca tcaccgacgc ctctggccgt acgctttccg gccagacgac cgaagccttt
     6721 tataactcgc tgcgccacgc cgaggcgctc acttttggcc ttaactgcgc gctggggcca
     6781 gatgaactgc gccagtacgt ccaggaactg tcgcggattg ccgaatgcta cgtcaccgcg
     6841 cacccgaacg ccggcctgcc gaacgctttc ggcgagtacg acctcgacgc cgacaccatg
     6901 gcgaaacaga ttcgcgaatg ggcggaagcg ggcttcctga atatcgttgg cggctgctgc
     6961 ggcaccacgc cggagcatat tgcggcgatg agccgcgccg ttgccggttt gtcgccgcgc
     7021 cagctgccgg atatcccggt ggcctgccgc ctttccggcc tggagccgct gaacattggt
     7081 gacgatagcc tgtttgtcaa cgtcggcgaa cgtactaacg tcaccggctc ggccaaattt
     7141 aaacgcttga tcaaagaaga gaaatacagc gaagcgctgg atgtcgcccg tcagcaggtc
     7201 gaaagcggcg cgcagattat tgatatcaat atggatgagg ggatgctcga cgccgaagcg
     7261 gcgatggtgc gtttcctcag cctgattgcc ggtgagccgg acattgcccg tgtaccaatc
     7321 atgattgact cctccaaatg ggaggttatc gaaaaagggc tgaagtgcat tcagggtaaa
     7381 ggcatcgtca actctatttc gatgaaagag ggcgtggaag cctttattca tcatgcgaag
     7441 ttgctacgtc gctacggcgc cgcagtggtg gtgatggctt ttgatgagca ggggcaggcc
     7501 gacacccgcg aacgtaaaat cgagatttgc cgccgcgctt acaaaatttt gctcgaagag
     7561 gtaggctttc cgccggaaga catcatcttc gacccgaata tcttcgccgt cgccaccggt
     7621 attgaagagc acaacaacta cgcgcaggac tttatcggcg cttgtgaaga catcaaacgc
     7681 gagctgccgc acgcgctgat ctccggcggc gtgtctaacg tgtccttctc gtttcgcggc
     7741 aacgacccgg tacgtgaggc tatccacgcg gtattcctct actacgccat ccgcaacggc
     7801 atggacatgg gcatcgtcaa cgccgggcaa ctggcgattt atgacaacct gcctgccgaa
     7861 ctgcgcgatg cagttgaaga tgtcattctt aaccgtcgcg atgacggcac cgagcgtttg
     7921 ctggatttgg cggagaaata tcgcggcagc aaaaccgacg aggctgccag tgcccagcag
     7981 gcggaatggc gtagctggga cgtgaaaaag cgtctcgaat actcgctggt gaaaggcatt
     8041 accgagttta tcgaacagga taccgaagaa gcccgtcagc aggccgcccg cccgattgag
     8101 gtgattgaag ggccgctgat ggacggcatg aacgtggtcg gcgacctgtt cggcgaaggg
     8161 aaaatgttcc tgccgcaggt ggtgaaatcc gctcgcgtga tgaaacaagc ggtggcctac
     8221 ctggagccgt ttattgaagc cagcaaagaa aaaggctcca gcaacggcaa gatggtgatt
     8281 gccaccgtga agggcgatgt gcacgacatt ggcaagaaca ttgtcggcgt ggtgctgcaa
     8341 tgcaacaact acgaaatcgt cgatcttggc gtgatggtgc cagcggagaa aatcctcaga
     8401 acggcgcgtg aagtgaatgc cgatctgatt ggtctttccg ggcttatcac cccgtcgctg
     8461 gacgaaatgg tcaacgtggc gaaagagatg gagcgtcagg gctttactat cccgctactg
     8521 atcggcggcg caaccacttc gaaagcgcat acggcggtga aaatcgagca gaactacagc
     8581 ggtccgacgg tctacgtgca gaatgcttcg cgtaccgtgg gcgtggtggc ggcgctactc
     8641 tccgacaccc agcgtgatga ctttgtcgcc cgtacccgca aagagtacga aaccgtgcgt
     8701 attcagcacg cccgcaaaaa accgcgcacg ccgccggtca cgctggaagc ggcgcgcgat
     8761 aatgatctgg catttgattg ggaacgctac accccgccgg tagcccaccg tctgggcgtg
     8821 caggaggtgg aagccagcat cgaaacgctg cgcaactaca tcgactggac gccgttcttt
     8881 atgacctggt cgctggccgg caaatacccg cgcattctgg aagatgaggt ggtgggcgtt
     8941 gaggcgcagc gtctgtttaa agacgccaat gatatgctgg ataaactgag cgccgagaaa
     9001 ctgttgaatc cgcgtggcgt ggtgggcctg ttcccggcga accgtgtggg tgacgacatc
     9061 gaaatctatc gcgacgaaac ccgtactcat gttctgacgg tcagccacca cctgcgccag
     9121 cagaccgaga aagttggttt tgctaactac tgtctggcgg attttgtcgc gccgaaactg
     9181 agcggcaaag cggactacat cggtgctttc gcggtgaccg gcggtctgaa ggaggatgcg
     9241 ctggcggacg ccttcgaagc gcaacacgac gactataaca agatcatggt gaaagcgatt
     9301 gccgaccgtc tggcggaagc gtttgccgag tatctgcatg agcgtgtacg taaggtttac
     9361 tggggatatg cgccgaacga gagcctgagt aacgacgaat taatccgcga aaactaccag
     9421 gggattcgcc cggcgccggg ttatcctgcc tgcccggaac ataccgaaaa aggcactatc
     9481 tggcagctac tggatgtcga aaaacacacc gggatgaagc tcaccgaatc tttcgccatg
     9541 tggcctggcg cgtcggtctc cggctggtac ttcagccatc ctgagagcaa atacttcgcg
     9601 gtagcgcaga tccaacgcga tcaggtgaca gattatgctt tccgtaaagg aatgagcgtt
     9661 gaggacgttg agcggtggct cgcgccgaac ctgggttacg atgcggactg attcataaaa
     9721 tcgtcacttt tccttacaac atacaaggca ctcattgggt gccttgtctc tttcttacaa
     9781 ttaaaccctt atactgaagg aaggctctac gctgaatttg ccggatggcg gcgtaaacgc
     9841 cttatccagc atgtatggta agcctggtgg cgtgcaacgc caccaggcct taacgctgtg
     9901 cgccatcagg caatttatcg caagtgagct tcaggaaaac gtataacgat aaggagaacc
     9961 tgacgccgtg ttaactttgc tccatctact ttctgccgtt gcgctgttgg tatggggaac
    10021 acatatcgtt cgtactggcg taatgcgcgt gtttggcgcg cgtctacgca ctgtcctcag
    10081 ccgcagcgtg gaaaagaaac cgctcgcctt ttgtgcgggt atcggtgtta ccgcgctggt
    10141 acaaagcagt aacgccacca ctttattggt aacgtcgttt gtcgcccagg atcttgtcgc
    10201 cctgacgcca gctctggtga ttgtgctggg cgccgatgtg ggtactgcgc taatggcgcg
    10261 tattctcacc tttgatttgt cgtggctatc gccgctgctg atttttattg gcgtgatttt
    10321 ctttttggga cgtaagcagt cccgcgccgg gcagctgggt cgcgtcggta tcgggcttgg
    10381 cctgattcta ctggcgctgg agctgattgt gcaggcagtg acgccgatca ctcaagctaa
    10441 tggcgtgcag gtcattttcg cgtcgctgac gggcgacatt atgctggatg cgctgattgg
    10501 cgcgatgttc gctattatca gttattccag cctggcggcg gtgttgctga cggcgaccct
    10561 gacggcggcg gggattatat cgttcccggt ggcgttgtgc ctggtcatcg gcgccaatct
    10621 gggatcgggc ctgttggcga tgctcaacaa cagcgccgcc aatgctgccg cgcgtcgcgt
    10681 agcgctcggc agcctattgt tcaaattgat cggcagcctg gtcatcctgc cgtttgtcca
    10741 tccgctggcg aatttgatgg atgagctacc gctaccgaaa tcagagctgg tgatctattt
    10801 ccacgttttc tataacctgg tgcgctgcct ggcgatggtg ccatttgccg agctgatggc
    10861 gcgtttttgt aaacgaatta ttcgtgatga gcctgaactg gatacccatc tgaagccgaa
    10921 acatctggat gtcagcgcgc tggatacgcc aacgctggcg ctggctaatg ctgcccgtga
    10981 ggtgttgcgc attggcgatg cgatggaaca gatgatggaa gggctaaaaa aggtcatgca
    11041 cggcgaaccg cgtgaagaga aagcgctgcg caagctggcg gatgacgtta acgtgctcta
    11101 caccgcgatt aagctttatc tggcgcgaat gccgaaagac gagctggcgg cggaggagtc
    11161 ccgccggtgg gcggagatta ttgagatggc cctgaacctc gaacaggcgt cggatattat
    11221 cgagcgaatg ggcagtgaga ttgccgacaa gtcgctggcg gcgcgtcggg cattttcaga
    11281 agaaggattg aaagagctgg atgcgcttta cgatcaactg ctcagtaatc tgcaactggc
    11341 gatgtcggtc tttttctccg gcgatgtcac cagcgcccgt cggttgcgcc gcagtaaaca
    11401 tcgcttccgt atacttaatc gccgatgctc acatgcgcat gtcgaccgcc tgcaccagca
    11461 gaacgtgcaa agtattgaaa ccagctcgct ccatttaggg ctgctgggcg atatgaagcg
    11521 tcttaactca ctgttctgtt cggtcgccta tagcgtactg gaacagccgg atcaggacga
    11581 ggaacggggc gagtattaag tgaaatgccg gatggcggtg taaacgtctt ccggcctacg
    11641 gaaaacatgc gcgtaggccc gccattcggc attcaatgtg gcctgggatt aaaagcgatg
    11701 acccgcttcc agcgccacgg cctcttcgcc cgctttaaac acccaggtgg tattcgggcc
    11761 gccgagaacc gcttggccgt tgctcacctg aatccagttg ccttccggca aaccaatcac
    11821 tgtcagttcc ggcgcgacca ccagcagttc gcgaatatgc tgctcgcggg tctcgccctt
    11881 atgaccctcc ggcaaggcgt tagtgaagtg aggattaatt tgcagcggga acagatccag
    11941 cgcgtcgaaa ccgtttggat cgacgatcgg catatcgttg gtcgtgcgga tagtcgggca
    12001 ggcaaggttg gcgcccgcgc tccagccgat atacagcgcg ccgcgtttta ccctgtccgc
    12061 caccggcgcc agcagcccgc gttcacgcga ttctttcagt agctggaagg tatttccgcc
    12121 gccgacaata acgatttccg ctttctcaat cgccgcaagc ggatcggcga cacgatgaat
    12181 ccctgtgacg tttatcccta atggcgcaag cacctctgcg gttttatccg tgtactcgtc
    12241 ccatgtttgc gtgacgccgg caaacggaat aaacacggct gagcgtcgac cgttcaactg
    12301 attcgctatc agcggcagag cgtgttccag ccaggcttta cccggcagcg tcgagttact
    12361 taataaaagc agttccatta tttctccacc tcatcaggaa atgtcaaaac gtaataatgc
    12421 taccattatc catttaatgt cttactgata tggctcatga tgttgcgcgt gttacaggca
    12481 acgcgcggtc gctaaaagtg acgccaggcc agatctgcca tctggtatcg cctgaaaaat
    12541 tacaggtata atccgcaaaa ttatttaaca cgtttagaga cgaaaatggc aaaactgacc
    12601 ttacaagagc aactgctaca agcgggatta gtgaccagca aaaaaatggc caaagtccaa
    12661 cgcacggcta aaaaatcacg cgttcaggct cgtgaggcca gagaagcggt ggaagaaaat
    12721 aaaaaggcgc aacttgagcg tgataaacaa ctcagtgaac agcaaaaaca agcggtttta
    12781 gcgaaagagt ttaaagctca ggttaagcaa cttattgaaa tgaatagaat caatgtatct
    12841 aaaggcgata ttggttttaa cttcaccgat aataacgtca tcaaaaaaat agacgtggat
    12901 aagcttaccc agacacaact gattaatggg cgtctcgcga ttgcgcgtct ggttatcaat
    12961 aacagcggtg aatgtgaata tgcgattatt cccgcgagcg tcgccgataa aatcgcacaa
    13021 cgagatgcgg acagtattgt cgtaaacagt gcgctgagtc aggaagagca ggacgaagat
    13081 gatccgtatg ccgattttaa agttcctgac gatttgatgt ggtaagtcac attcccaacg
    13141 tttatgtaga aaaatttctc agagagtaaa tatgctgacc gacacatcta cccggcttaa
    13201 taaatatatc agtgaaagcg gcatctgttc gcgtcgcgag gcggaccgtt ttatcgaaca
    13261 gggcaatgtc tttatcaacg gcaaacgcgc cgccattggc gatcaggtgg tcgccgggga
    13321 tgttgttaaa gtaaatggtc ggttgattga gccgcgagaa gcggatgatt tagtgctgat
    13381 tgcgctgaat aaaccggttg gcattgtcag taccactgaa gacggcgaac gcgacaatat
    13441 tgtcgatttt gtgaaccaca gcaaacgtat cttcccgatt ggtcgtctgg ataaagactc
    13501 gcaggggctg atatttctga ctaaccacgg cgatctggtc aataagattc tgcgtgccgg
    13561 taacgatcac gaaaaagagt atctggtgac ggtggataaa ccgattaccg acgagtttat
    13621 tcgcggtatg ggcgctggcg tgccgattct gggtaccgtc accaaaaaat gtaaggtgaa
    13681 aaaagaggcg ccgtttgtct ttcgcattac cctggtgcag ggattaaacc gtcagatccg
    13741 tcgtatgtgt gaatactttg gttatgaagt gacgaaactg gagcgtacgc gcattatgaa
    13801 cgtcagcctg agcgggattc cgctgggcga gtggcgcgat ctgacggacg atgagctgat
    13861 cgatctgttt aaattgattg agggttcctc ttccgaagcc aaaccaaagg ccaaagcgaa
    13921 gccgaagacc gcgggtatta agcgaccggt cgtggcgatc gaaaaaagca atgagaaagc
    13981 gcgcccggca tcaagcggta agcgctttac ctcaccggga cgaaagaaga aaggacgtta
    14041 acgtctgccg cgcgtcggcg tattcgccga ccaggagaat gacgcttccg tatcgggttt
    14101 atacgcctgc tttttcttca actggcgggc ttttttcgct tcagcctcac gcagcgccat
    14161 cagcttatcg atgtactcct tttttacgct gttggtctca gaattggtca gcggacgccc
    14221 gtgcgcaata cgggcgcggt ccagcaacgt tttcagttcg cgctgttcgc gctcggtcat
    14281 ctctttttgg gtaatgcggg ggagtgccat acgggtgccc tcagttagcc gatgcattta
    14341 gtctacggca atacgcaacg ggcggatagc gctcagtcag caatccgcag ctttccagcg
    14401 aaatcctgtg gcgtataacc cgttgacgta aatcctttat ccgtgatgat gttatcgatt
    14461 tcttttacgc ttgcgatgca catcacaccg tcctgaccaa atttggtatg gtcagcgaga
    14521 atcactgatt ttttgctcat cgcaatcatg gctttggcaa cgtaggcttc ttcaaagctc
    14581 ttcaccaaca cgccatgctg gggagaaatg ccgccagcgc caataaaaca gatatccgcg
    14641 tgaatcgcgt taatctgctg acataccgag acgccgagat tagcgcgaaa atggtaatca
    14701 tattcgccgc ctaatacata cacgcgggcc tgcaggttat gctctttaat tttatcggca
    14761 atcagtgctg aattggtaat cacggaaaaa gcgagaggcg gtaattgctc ggccagaata
    14821 aggttagttg tacaggaatc aataaacaat gtatcccgtt cactgatcat ttcggcggca
    14881 agtttgccaa tcgctatttt ctcttcgcga tgcgcctcta ttcttgcgct aaacgcatct
    14941 tcctggacaa cttgcttttt gaccgcgccc ccatgaatct tagtgatttt gccttctgat
    15001 tccagtaagg agagatcgcg acgaatggtt tccgaggtga cgttgagcat ttccgataat
    15061 ttaataacgg tgacttcacc gaatttgttt aattcatcaa gaatatgttt tcgtctttta
    15121 attggattca ttatctttcg ccgctgtcaa cctttggcgc atggtaactg gatgcgtaag
    15181 gcaacgcaac cactccaacg catggacgat accctcctca tcattcgtgg cagtcacata
    15241 gtcggcctgc cgctttactg catccggcgc gttgcccatt gcgatgctga ttccggcggc
    15301 ggcaaacatg ctgacatcat tctgctgatc gccaatcacg accaccttgt cagaagatat
    15361 atttaaataa tgaattaatt gttctattat gcacccttta tttacatcgg ttctttgaat
    15421 atcaatataa ttttctcccg tgacgaccgc ataatatcca taaggcaggt gattattcac
    15481 ttctgtacac agtgtatcta tctccgaaga tacggcaaca agggtaattt tatatatatc
    15541 gcgacgatta aagatatttt ctgtagtttc agttataagc ggcaacccaa ataagcgggc
    15601 ttcatatgtt gtccagggcg caatcagtct atcgtcacga tggtgaattg cttcggcgct
    15661 aaaaaaatgg tggtgatagc gggaaagaga aatatgctgg tcaatattcc acagatctgt
    15721 ggcggacaac ggagcagcat gaataatgcg ctgccccgcc atctccagaa gatgtccgca
    15781 gttaaaaccg gcgcaccagc taaacaacct atcaacctgt tgttggtgta gcaggcgtac
    15841 cattgaggag accggtctgg cggaacatgc cgccagcaga ctaccgtcct ggcggaacgc
    15901 aatcagcgcc tgacgcgtgc gcgggctgat tgttttctgc gaggtgagta atgttccatc
    15961 cagatcggtg attaacaaca tctctcgttc cctgatatca atgaacaata aacggcgtaa
    16021 cggcttcttt ggcggcgttg cacaccatgt tgtcgatagc cgtaccgacc accagaatat
    16081 tgactccggt atctttaaac gctttcgcgt tggcgaggtt aatcccgcct tccgccagcg
    16141 tcggaacatc caccgcgccg accaacgccc gcaggcgatc tttaatcatc tgcgggatat
    16201 cgcctgccgc tacgccttca tagctcatgc ctgtcatcag accaatcata tccacgccga
    16261 tatcctgcat ccgcttcgcc acgctggcga cctcttccgg cgtgcgtgca ggaataccga
    16321 aagtatgcag atcgtcagga tggccaatgt aggcatcgac ggtcagacca tattgatggg
    16381 cgagattaac gatgtcctgc agatcgtccc agtcggattt atgcgtatgt aaaccgtcgg
    16441 ctccagcgcg ggcaatctcc agaatttccg tttcgctgag cggcaccggt aaggtttcgg
    16501 taaaaccgcc ggcgatacca acggtgataa aaatatcgtc cgggaccaca ttacgaacac
    16561 cgtgtacggc ctcagccatc tggctattgg tgatttcgtg acgaatctgc tccgccgcgt
    16621 gcatgttgct cacgcctttg tgtccacgcg ccagcgccaa cgcagggtgg ttcggctcca
    16681 gaagcttaac gccagcctca cacacggctt tcgccaggcg cgcatcgtcg ccagttattc
    16741 ctgtgctgag gatagtttgc ccaccgtgaa gcgtgatggc ttctttcact ttctgtaacg
    16801 ctttggcgcg ttttttattc atatcgcctt taaacatggt gtacctctgg tgttggtgca
    16861 ttaattaacg gctgtcgttg ttgattcgct ctgtacgaca ggtttgaaac ggttagcaat
    16921 aatggtggta aggcaggtca tcgccattgt ggcaatcatt acgatggcca tctggagcgc
    16981 attgctggat aagaacggtg aggcgaaagc cggaacatag gccacgcctt tgacgttaaa
    17041 aaagcccagc atcatgccgc ccattccggc ccaaaaaatg gcggagccaa aaacaatttt
    17101 gttggcgaac atgaagggat aggcggattc aacaaaggtg ccaaaaccca ggttaatgag
    17161 caggcccggc gtagcaacgg cagcttcgct tttttcacgc ggggcgatca cattggcaag
    17221 gttaatacct gcggccacca tcaccagacc gaccatatcg accgcgccga ggaagctgac
    17281 gccggatttt tccatctcca gcagtaccaa cggcaggatc accgcgtgat agacgccgcc
    17341 gagaatggca ggccagataa ccagaccagc cagcagcccg gcaagaattg ggctgaatgc
    17401 cagcgtgctt tcgatagcca gtttgatgta attacccgca gatagcgcca gcggactcag
    17461 cagatagtgc atgattaacc cagcggcaag gcccgatatc ccaccggcga cgatgttgac
    17521 ggtagtcatt gggaagcgcc agttcaggca cagctcgaac agccaacgga cgaaaatccc
    17581 cgccattaca ccgccgataa tgccgccgat cagtccgccc tctacggaaa gcacgccagc
    17641 gacgacccca gccacaattg aaacttcatc cagttcggaa atctgttttg ccgccagtac
    17701 cgcgactaac actggcagac cttttagtaa tatttcaaag atatcgttaa gtttttccag
    17761 tcctggtatg tggctcaggg cgagtacaat cgccatggcg ataaagcctg gtagcgcagg
    17821 gatcatgatg ctacgaatgt taaaacgttt gagcaggctt tttccggaac cgctctgcga
    17881 gggcgaagcg ctacccaact gtggtttgta cttgataccc caatgtttac atagtgacgc
    17941 cacgaaggag acggcgcggg tacggctggt ggtgccggtt gttccggagg tcgcgaccac
    18001 attcgccccc tttgccgcca ccagcgccat ggaggttccc ccggtgccga caatcggtgt
    18061 tttcatctca acggcggcgg caaaaacggc ttggttcgcc tttaccggat cggcgctcat
    18121 taccacgatc ccatcgatct caccgcggcg gatcatctca gcgatttggc gatcgctttc
    18181 tactaccgag gtgtttacct ccgaaagctt accctgaaat atgcgctgtg gtttttgttg
    18241 gttttctgtg gttaatgcat aaaccgatgc cggggtgtcc ggtttggcga cgtccatcga
    18301 ggcctctgcc gcgataaatt gtacggcggc cacattcacg cccgcagcct cacactgctg
    18361 ataaatctcc tggagtaact tctctggctc ggcgccaccc aggttgtaga ggttgcctcc
    18421 actgcttcca ataatcgcaa ttttttcata gcggcctcaa atagggtaag ggggttatct
    18481 gtgttgtagt gcaatcataa ttccaactaa aacaaaataa agcaacaatg aaaaagtgct
    18541 tttataccaa acgatctcaa tttttaaagg taagttatta aaatataatg ataaatttat
    18601 gtttttgttt tgtgttgttt tgcgtggttt tgtgacgagg ttcaaaatga ggagggcata
    18661 aataggggaa agctgcccat attgatggga cgagcagggt gtacagattc ctgccttctg
    18721 taattggctt tctggagcag tattccgccg gcagtgcctg acgtgggaac cgccggataa
    18781 ggcgcttgcg tcgccatccg gcagcgtatt gcctgatagc gctcacccgc tgtcgtgtca
    18841 gggcgattat tcaaataagt tctgatgtag cttttgcacc actttctcgg catcgtctcc
    18901 cggcacgagg aagcacagat tgtggctgga ggcgccgtaa caaatcatgc gaatgttgaa
    18961 cggttccagg acgccaaaca cttctttacc aacaccgcag gcttttgaca ggttgttgcc
    19021 aatcagcgcg accagcgcca gtccttcttc aacttcgacc cgacacagcg cggaaagctc
    19081 catcaataag gattgggtca gtaacgtatc gcccgtggag gtggagccgg tagtatccag
    19141 cgtcagcgcg acgctcacct ccgaagtggt aatcagatct accgaaatat tatgccgcgc
    19201 cagaatgccg aacacctctg ccaggaaacc tcgtgagtgc agcatattca ggctgtgcag
    19261 cgtcaatagc gtttgattgc ggcgcagcgc cagcgcgcgg aacagcggcg ggttttgggt
    19321 tttattgcac accagcgtac cgcccgcttg cggatcttta ctggagccaa cgaagaccgg
    19381 gatatcgctg cgcacggccg ggagtaaggt ggctggatgc agtacttttg cgccgaaggt
    19441 tgccatctcc gccgcttctt caaagtcgat ttcatcaatt cgctgcgcga cgggcactac
    19501 gcgcgggtcg gtggtgtaaa taccgggcac atctgtccag atatcaaccc gcgcggcgtg
    19561 gagcgcttca gccagcaacg ctgccgtata gtcgctgccg ccgcggccta atgtcgtggt
    19621 gcggcctttg ctttcactgc cgataaagcc ctgagtaatg accaacgttt cgctcaggcg
    19681 cgggagcaac tgctgcgcgg ccagttccgc aagcgctgcg acgtccggtt ccgcacgacc
    19741 aaagcgatcg ctggtacgca tcactttgcg cacgtcgaac cagtgggcct gtacgtcgcg
    19801 ttcacgcagg atctcaacaa atagcagggt agacattagc tcgccgtggc tgaccagttc
    19861 atcggtcagg gctgccgatg tcgccagcga tgccgcctcc gccagaatag tgatgttttc
    19921 cagcaggcgt tcaatctctt cgcgaatgac attcggatga cgcagacgat caaggatatc
    19981 gaactggatt ttacggatgg cgtcgagcgt agcgaaacgt tcgccgggct ccatcccttc
    20041 ggccagcgcc accagcagat tagtgatgcc ggcagacgcg gaaagcacga ctaaacgaac
    20101 attggcgtcg gaaagtacga tatccgcgct acggttcatg gcgtcaaaat cagcgacgct
    20161 ggtaccgcca aatttggaaa caacgatctc tgtcatatca acctcgtgtc aggaaatgaa
    20221 aaacgcgacc atggcacaaa ggcagaacag aaaccggtgc aggcgcaaat gcaagtaacg
    20281 tatttataaa taaaagttgt ggactggact gtcaacgttg ggattatgcg gattttttat
    20341 gctgagttta ggctcagtaa cagcgcttat aaccccgata cccgtttgta ggaatgttgg
    20401 cttatctatg cgcccggcga ctcacccact tgccgccttt ctgcacctcg aattatttag
    20461 ggtatatact ttttatcctc attcgacagt gcctggggca acggcactaa aacaatcaca
    20521 cttttctgtg actggcgtta caatcgatcc cagtcacaat tctcaaatca gaagagtatt
    20581 gctaatgaaa aacatcaatc caacgcagac ttctgcctgg caggcgctcc agaaacacta
    20641 cgacgaaatg aaagacgtta cgatcgctga gcttttcgcg aacgatagcg accgtttcgc
    20701 taaattttcc gcgacgtttg acgatctgat gctggtggac ttctccaaaa accgcatcac
    20761 cgaagagacg ctggcaaaat tacaggatct ggcgaaagag accgatctgg ccggcgcgat
    20821 taaatccatg ttctccggcg agaagatcaa ccgcaccgaa gaccgcgccg tgctgcacgt
    20881 ggcgctgcgt aaccgtagca atacgccgat cattgtggac ggcaaagatg tgatgccgga
    20941 agtgaacgcc gtgcttgaga aaatgaaaac tttctcgcaa gcgattatct ccggtcagtg
    21001 gaaaggctac accggtaagg ccatcaccga cgtggtgaac atcggtatcg gcggttccga
    21061 cctcggcccg ttcatggtga ccgaagcgct gcgtccgtat aaaaatcatc tgactatgca
    21121 cttcgtctct aacgttgatg gtacccacat cgctgaagtg ctgaaaaaag tgaacccgga
    21181 aacgactctg ttcctggtgg cgtcgaaaac cttcaccacg caggaaacca tgaccaacgc
    21241 ccacagcgcg cgcgactggt tcctgaaaag tgcaggcgat gaaaaacacg tggcgaaaca
    21301 ctttgctgcg ctctccacca acgccaaagc ggtcggcgaa tttggtatcg acacggccaa
    21361 tatgttcgag ttctgggact gggtcggcgg tcgttactcg ctgtggtctg ccatcggact
    21421 gtccattatt ctgtccgtcg gtttcgacaa ctttgtcgag ctgctttccg gcgcgcacgc
    21481 gatggacaag catttctcca ccactccggc ggagaaaaac ctacccattc tgctggcgtt
    21541 gattggcatc tggtacaaca atttcttcgg cgcggaaacc gaagccattc tgccgtacga
    21601 ccagtatatg caccgtttcg ccgcctactt ccagcagggc aacatggaat ccaacggtaa
    21661 atacgttgac cgtaacggca acgccgtgga ttaccagaca ggcccaatta tctggggcga
    21721 accaggcacc aacggtcagc acgcgtttta tcaattgatt caccagggta ctaaaatggt
    21781 gccgtgtgac tttatcgccc cggctatcac ccataacccg ctatccgatc atcatcagaa
    21841 gctgctgtct aacttcttcg cgcagaccga agcgctggcg tttggtaaat cccgcgaggt
    21901 ggttgagcag gaatatcgcg atcagggtaa agatccggcg cagcttgaac acgttgtgcc
    21961 attcaaagtg tttgaaggca accgcccgac caactctata ctgctgcgcg aaattacgcc
    22021 gttcagcctg ggcgcgctga ttgcgttgta tgagcataaa atctttacgc agggcgtcat
    22081 cctgaacatc tttactttcg accagtgggg cgttgagttg ggtaaacagt tggctaaccg
    22141 tattctgccg gagctgggcg atgataaagc tatttcgtcc catgatagct ctactaacgg
    22201 tctgattaac cgttataaag cctggcgcgc ctgatggcgc tgcgcttatc cggtctacgt
    22261 aatgcatagc gtctgtaggc cggataaggc gtttcgccgc catccggcaa aaagagaata
    22321 agataataa
//
LOCUS       DAJVSD010000048        22159 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.048, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000048 DAJVSD010000000
VERSION     DAJVSD010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 22159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22159
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.048"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            81..1412
                     /gene="cadB"
                     /locus_tag="OQP62_001542"
     CDS             81..1412
                     /gene="cadB"
                     /locus_tag="OQP62_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cadaverine/lysine antiporter"
                     /protein_id="HCS1721126.1"
                     /translation="MSSVKKIGLFACTGVVAGNMMGSGIALLPANLASIGGIAIWGWV
                     ISIIGAMSLAYVYARLATKNPQQGGPIAYAGEISPAFGFQTGVLYYHANWIGNLAIGI
                     TAVSYLSTFFPALNNPIPAGIACIAIVWLFTFINMLGGAWVSRLTTIGLFLVLIPVVL
                     TAVAGWHWFAIATYHANWNTSTTTDSHAIVKSILLCLWAFVGVESAAVSTGMVKNPKR
                     TVPLATMLGTALAGIIYIAATQVIAGMFPASVMASSGAPFAISTSTILGGWAAPLVSA
                     FTAFACLTSLGSWMMLVGQAGVRAANDGNFPKIYGEMDKNGIPKKGLLLAAVKMTALM
                     ILITIMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEGFNIRNSVSLICSVL
                     GCAFCFIALMGASSFELSGTFIVSLIILMFYGRKMHQRQNNDSDNNTAEAL"
     gene            1495..3639
                     /gene="cadA"
                     /locus_tag="OQP62_001543"
     CDS             1495..3639
                     /gene="cadA"
                     /locus_tag="OQP62_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine decarboxylase CadA"
                     /protein_id="HCS1721127.1"
                     /translation="MNVIAIMNHMGVYFKEEPIRELHRALEGLNFRIVYPNDREDLLK
                     LIENNSRLCGVIFDWDKYNLELCEEISKLNEYMPLYAFANSYSTLDVSLNDLRMQVRF
                     FEYALGAAADIAAKIRQNTDEYIDNILPPLTKALFKYVREGKYTFCTPGHMGGTAFQK
                     SPVGSIFYDFFGPNTMKSDISISVSELGSLLDHSGPHKEAEEYIARVFNAERSYMVTN
                     GTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDITPIYFRPTRNAYGILGGIP
                     QSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDYIKKTLDVKSIHFDSAWV
                     PYTNFSPIYQGKCGMSGDRVEGKIIYETQSTHKLLAAFSQASMIHVKGDINEETFNEA
                     YMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLKSESDGWF
                     FDVWQPEHIDGAECWPLRSDSAWHGFKNIDNEHMYLDPIKVTILTPGMKKDGTMDEFG
                     IPASLVAKYLDERGIIVEKTGPYNLLFLFSIGIDKTKALSLLRALTEFKRAFDLNLRV
                     KNILPALYREAPEFYENMRIQELAQNIHKLVEHHNLPDLMYRAFEVLPKMVMTPYTAF
                     QKELHGETEEVYLEEMVGRVNANMILPYPPGVPLVMPGEMITEESRPVLEFLQMLCEI
                     GAHYPGFETDIHGAYRQADGRYTVKVLKENTK"
     gene            3695..5155
                     /gene="dtpD"
                     /locus_tag="OQP62_001544"
     CDS             3695..5155
                     /gene="dtpD"
                     /locus_tag="OQP62_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide permease DtpD"
                     /protein_id="HCS1721128.1"
                     /translation="MKTPSQPRAIFYIVAIQIWEYFSFYGMRALLILYLTHQLGFNDS
                     HAINLFSAYASLVYVTPILGGWLADRLLGNRVAVITGALLMTLGHVVLGLESDSTLSL
                     YAALAIIICGYGLFKSNISCLLGELYAPDDNRRDGGFSLLYAAGNIGSIAAPIACGLA
                     AQWYGWHVGFALAGVGMFIGLLIFLSGHRHFQQTRGVNRPALRAVKFALPTWGWLVLM
                     LCIAPVFFTLLLENNWSGYVLAIVCVFAAQLIARIMVKFPEHRRALWQIVLLMITGTL
                     FWVLAQQGGSSISLFIDRFVNRHWLNMTVPTALFQSVNAIAVMAAGVVLAWLSSPKES
                     ARSVLRVWLKFAVGLILMGGGFMLLALNAHQARLDGQASMGMMIAGLALMGFAELFID
                     PVAMAQITRLNLPGVTGVLTGIYMLATGAIANWLAGVVAQQTTESQISDTAVAAYGHF
                     FSQMSEWTLSCVALIVAIVGLRWICTRTTSALPQGD"
     gene            complement(5204..5542)
                     /gene="glnB"
                     /locus_tag="OQP62_001545"
     CDS             complement(5204..5542)
                     /gene="glnB"
                     /locus_tag="OQP62_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017373484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulatory protein P-II"
                     /protein_id="HCS1721129.1"
                     /translation="MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTE
                     LYRGAEYMVDFLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRI
                     RTGEEDDAAI"
     gene            complement(5619..6956)
                     /gene="glrR"
                     /locus_tag="OQP62_001546"
     CDS             complement(5619..6956)
                     /gene="glrR"
                     /locus_tag="OQP62_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator GlrR"
                     /protein_id="HCS1721130.1"
                     /translation="MISRKPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEGLR
                     VLHREKVDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQKGVF
                     SFLTKPIDRDALYKAIDEALEQSAPATDDSWRNAIVTRSPLMLRLLEQARMVAQSDVS
                     VLINGQSGTGKEIFAQAIHNASPRNNKPFVAINCGALPEQLLESELFGHARGAFTGAV
                     SNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISA
                     THRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQSAQRHKPFV
                     RAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTF
                     AEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE"
     gene            complement(6953..7717)
                     /gene="qseG"
                     /locus_tag="OQP62_001547"
     CDS             complement(6953..7717)
                     /gene="qseG"
                     /locus_tag="OQP62_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system QseEF-associated
                     lipoprotein QseG"
                     /protein_id="HCS1721131.1"
                     /translation="MNLSLVRMSHVFVQTIKRCLLRWGIPVGISCLALTACVPHASQQ
                     LPGSAAQDTLPHYQLADYLPTACADIWSLRGQAVETNPLYWLRTIDCADRLMPVQSRA
                     EARSLTDDNWQNAFRRGILLADAKITPPERRAIVTRLEALSAQIPAQVRPVYQIWHDG
                     QALQLALSAERQRYSKLQQTSDSELDALRQQQQALQTQLDLTTRKLESLTDIERQLST
                     RKPAGNYNADTPHTNDKPATSEDGAAPSPSQDEVTP"
     gene            complement(7719..9149)
                     /gene="qseE"
                     /locus_tag="OQP62_001548"
     CDS             complement(7719..9149)
                     /gene="qseE"
                     /locus_tag="OQP62_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two component system sensor histidine kinase
                     QseE/GlrK"
                     /protein_id="HCS1721132.1"
                     /translation="MKRWSVFPRSLRQLVMLAFLLILLPLLVLAWQAWQSLNALSDQA
                     AVTNRSTLIDARRSEAMTNVALEMERSYRQYCVLDDPTLTKVYQSQRKRYSDMLDAHA
                     GVLPDDKLYQALRQDLNALAQLQCKDSGPEAAAAARLEAFANANTEMVQATRTVVYSR
                     GQQLQQEIAERGQFFGWQALVLFLVSLAMVLLFTRMIIGPVKGIERMINRLGEGRSLG
                     NTVTFTGPRELRSVGQRIIWLSERLAWLESQRHQFLRHLSHELKTPLASMREGTELLA
                     DQVVGPLTPEQKEVVDILDDSSRNLQKLIEQLLDYNRKLVDSATELEAVDIAPLVDMV
                     VSAHSLPARAKMMHTDVDLEAERCIAEPMLLMSVLDNLYSNAVHYGAESGNICIRSRS
                     QGSTVYIDVVNSGEPIPQTEREMIFEPFFQGSHQRKGAVKGSGLGLSIARDCIRRMQG
                     EIQLVDDKAQEVCFRISLPLPASDKH"
     gene            complement(9799..13686)
                     /gene="purL"
                     /locus_tag="OQP62_001549"
                     /gene_synonym="purI"
     CDS             complement(9799..13686)
                     /gene="purL"
                     /locus_tag="OQP62_001549"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HCS1721133.1"
                     /translation="MMEILRGSPALSAFRINKLLARFQAANLQVHNIYAEYVHFADLN
                     APLNDSEQAQLTRLLQYGPALSSHTLAGKLLLVTPRPGTISPWSSKATDIAHNCGLQQ
                     IDRLERGVAYYIEASTLTAEQWRQVAAELHDRMMETVFSSLTDAEKLFIHHQPAPVSS
                     VDLLGEGRQALIDANLRLGLALAEDEIDYLQEAFTKLGRNPNDIELYMFAQANSEHCR
                     HKIFNADWIIDGKPQPKSLFKMIKNTFETTPDYVLSAYKDNAAVMEGSAVGRYFADHN
                     TGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLVG
                     FSVSNLRIPGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALTGYFRTY
                     EEKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQKGEIVVGAKLIVLGGPAMNIGLGG
                     GAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLGDANPILFIHDVGAGGL
                     SNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDEL
                     CKRERAPYAVIGDATEEQHLSLHDNHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGD
                     ALNRADITIADAVNRVLHLPTVAEKTFLVTIGDRTVTGMVARDQMVGPWQVPVADCAV
                     TTASLDSYYGEAMSIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANW
                     MAAAGHPGEDAGLYDAVKAVGEELCPQLGLTIPVGKDSMSMKTRWQEGNEQREMTSPL
                     SLVISAFARVEDVRHTLTPQLSTEDNALLLIDLGKGHNALGATALAQVYRQLGDKPAD
                     VRDVAQLKGFYDAMQVLVAARKLLAWHDRSDGGLLVTLAEMAFAGHCGVQVDIAALGD
                     DHLAALFNEELGGVIQVRAEDRDAVETLLAQYGLADCVHYLGQALAGDRFVITANDRT
                     VFSESRTTLRVWWAETTWQMQRLRDNPQCADQEHEAKANDADPGLNVKLSFDINEDIA
                     APYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHAL
                     VACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRE
                     LIPGSELWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVR
                     DDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGRVTIMMPHPE
                     RVFRTVANSWHPENWGEDSPWMRIFRNARKQLG"
     gene            13711..13941
                     /locus_tag="OQP62_001550"
     CDS             13711..13941
                     /locus_tag="OQP62_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001669324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721134.1"
                     /translation="MCARGETAAIIKNLTRRRNRLRRNKITAFSCHTVRLSLRISCQL
                     AHCYAKCRSLVTYLLQQNIFFSPRQRTIQRIN"
     gene            13942..15369
                     /gene="mltF"
                     /locus_tag="OQP62_001551"
     CDS             13942..15369
                     /gene="mltF"
                     /locus_tag="OQP62_001551"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000734247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltF"
                     /protein_id="HCS1721135.1"
                     /translation="MKKLKINYLFIGILTLLLAAALWPSIPWFGKTENHIAAIQARGV
                     LRVSTIDSPLTYSVINGKKYGLDYELAQQFANYLGVKLKVTVRQNISQLFDDLDNGNA
                     DLLAAGLVYDSARVKNYQPGPMYYSVSQQLVYRVGQYRPRSLATVNENQLTIAPGHVV
                     VNDLQRLKETKFPDLSWKVDDKKGSTTLLEEVISGKLDYTIADSVAISLFQRVHPELA
                     VALDVTDEQPVTWFSRLDDDNTLSAALLDFFNSINEDGSLARIEEKYLGHGDDFDYVD
                     TRSFLRAVDNVLPELEPLFKKYAKEIDWRLLAAISYQESHWDPLATSPTGVRGLMMLT
                     KNTAQSLGLTDRTDAEQSISGGARYLEDMMAKVPETVPEDERIWFALAAYNMGYAHML
                     DARSLTVKTKGNPDSWTDVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQIS
                     LVGYLQEKEKQEAEAMKLAQDYPAV"
     gene            complement(15537..16088)
                     /gene="tadA"
                     /locus_tag="OQP62_001552"
     CDS             complement(15537..16088)
                     /gene="tadA"
                     /locus_tag="OQP62_001552"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HCS1721136.1"
                     /translation="MPPAFITGVTSLSDVELDHEYWMRHALTLAKRAWDEREVPVGAV
                     LVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDTTLYVTLEPCVMCA
                     GAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHPGMNHRVEIIEGVLRDECATLLSDFF
                     RMRRQEIKALKKADRAEGAGPAV"
     gene            complement(16113..16748)
                     /gene="yfhb"
                     /locus_tag="OQP62_001553"
     CDS             complement(16113..16748)
                     /gene="yfhb"
                     /locus_tag="OQP62_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase C"
                     /protein_id="HCS1721137.1"
                     /translation="MVSHERRVVFFDLDGTLYQQDMFGSFLRYLLRRQPLNALLVLPL
                     LPIIGIGLLVKGRAARWPMSLLLWGCTFGHSETRLQAHQADFVRWFRANVTAFPVVQE
                     RLTTYLLSSDADIWLITGSPQSLVEQVYFDTPWLPRVNLIASQMARRYGGWVLTVRCL
                     GHEKVAQLERKIGTPLRLYSGYSDSKQDNPLLYFCQHRWRVTPHGELQQLE"
     gene            complement(16752..18113)
                     /locus_tag="OQP62_001554"
     CDS             complement(16752..18113)
                     /locus_tag="OQP62_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HCS1721138.1"
                     /translation="MDKTAALASDILRGIGGEQNILRLENCMTRVRVEVQDDSQLDIP
                     RLKALPGVSGYVKQGEQHQLIVGPGKAAQVVDAMRVQIAAGGVKPDDAMARTKSEAKA
                     KYKAPMSDALRKLANVFIPLIPAFIASGLITGIINILKRPDIVGDVAVHYPNLLGLMG
                     IFGSAVFAIMNILVGVNTAKVFGGSQALGGVMAGILSSPQLAQITLFGEALQPGRGGV
                     IAVLLVVALMCWIERQFRKLLPGSLELILNPLLTTVITGAVAIVALQPLGGWISDAIA
                     HGASWAIDRGGFLVGAVLAGTFLPLVLIGLHQGLVPIHVELVQAHGYNALFPILAMAG
                     VGQIGAAIAVLMKTRNARLKKVIKGALPVGLLGIGEPLIFGVTLPLGKPFIGACLGGA
                     VGGALISYWKVATVITFGISGLPLALTIVAGKVLFYLLGYLIAVIAGFIFTWLLGFND
                     PEE"
     gene            complement(18124..19017)
                     /gene="murQ"
                     /locus_tag="OQP62_001555"
     CDS             complement(18124..19017)
                     /gene="murQ"
                     /locus_tag="OQP62_001555"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HCS1721139.1"
                     /translation="MNLGALVSETRNPQTMDLDALSTPELVKRFNEQDTLVAEAVKAT
                     LPDVARAVDAAAAALKSGGRIIYMGAGTSGRLGVLDASECPPTFGVPHGLVVGLIAGG
                     PGALLKAVEGAEDSQQAGEDDLVALNLQEQDLVVGLAASGRTPYVIGGLRYARQSGCT
                     TVAVSCNPDSPIAREANIAISPVVGPEALTGSTRLKSGTAQKMVLNMISTGAMVKFGK
                     VYQNLMVDMKATNVKLVDRACRMVVEATGIGREEAETLLKQTDFEVKPAILMALTGLD
                     AAAAREKLAAHQGFLRAALEH"
     gene            19133..19981
                     /locus_tag="OQP62_001556"
     CDS             19133..19981
                     /locus_tag="OQP62_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HCS1721140.1"
                     /translation="MNCLIRIRQRYPDLAQSDRKLADYLLAQPDTARHLSSQQLAAEA
                     GVSQSSVVKFAQKLGFKGFPALKLAISEALASNPNPHSVPVHNQIRGDDPMRLVGEKL
                     IKENVAAMHATLDVNSEEKLLESVTMLRHARRIVITGIGASGLVAQNFAWKLLKIGIN
                     AVVERDMHALLATVQALAPEDLLLAISYSGERRELNLAADETLRAGAKILAITGFSPN
                     ALQQRATRCLYTIAEEQATRSAAISSTHAQMMLTDLLFMALVQQDLERAPERIRHSEA
                     LVKKLV"
     gene            complement(20020..20937)
                     /locus_tag="OQP62_001557"
     CDS             complement(20020..20937)
                     /locus_tag="OQP62_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS1721141.1"
                     /translation="MKIAIAGAGAMGCRFGYMLLEAGHDVTLIDGWQEHVDAIRSKGL
                     FVETETTQKYYPIPAMLADESQGEFELVILFTKAMQLDSMLQRIKPLLPAAKVVMILS
                     NGLGNIETLEKYVDRQKIYAGVTLWSSELEGAGHIMATGTGTIELQPIASQDSAQEAK
                     VIATLNSAGLNAEISPDVLLSIWKKAAFNSVMNTYCALLDCNVGGFGQRPGALDLAQA
                     VVDEFVLVAASQNIPLTEQMVMNTVKKVFDPRESGHHYPSMHQDLHKGRLTEIDYLNG
                     AIARIGAQNNIAVPVNTLLTQLIHAKEAQ"
     gene            complement(20959..22155)
                     /locus_tag="OQP62_001558"
     CDS             complement(20959..22155)
                     /locus_tag="OQP62_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OFA family MFS transporter"
                     /protein_id="HCS1721142.1"
                     /translation="MSASINRWGMLAAHVCINFVLGGVYAFSYFKTPLMAQYHWDPAT
                     PALAFSINMGIIPLPMIWGGRMIDNGKGKQAIVIGGILFSLGFILSGFVDNLPMLFLT
                     YGVIAGLGSGLAFTGNLNNILKFFPDRRGLASGIVLAGVGVGTLLCTRLAEYFMAQTH
                     DVSRALLYLGIVYLVVIFIVQFFIRSAPAKDSGGIKASPLDKDYRHMLKDLRFWLLFM
                     ILALGVFSGMVISSSSAQIGMTQYGLLSGALVVSLVSIFNSIGRLFWGGLTDKLGGYN
                     TLVIVYLFTCVCMLLLLFFNGNTSVFYFSALGVGFAYAGILVIFLGLTSQNFGMRNQG
                     LNYGFMYFGFAVGAVIAPYVTSAIAKYTGSYNTVFILTTVLLLIGVVLTLITKKYVAT
                     VLAKIH"
BASE COUNT         5195 a         6301 c         5644 g         5019 t
ORIGIN      
        1 cttgtcgaca gttgaacggg cacgcagcat atatgaagca taagcccggt tcttaaaaat
       61 acagctcagg agaaatgaac atgagttctg tcaaaaagat cgggctattt gcctgtactg
      121 gcgtcgttgc cggtaatatg atggggagcg ggattgcatt attacccgcc aaccttgcca
      181 gtattggtgg cattgccatc tggggctggg taatttctat tattggggca atgtcgctgg
      241 cttatgttta tgcgaggctg gcaaccaaaa acccgcaaca gggtggccct atcgcttatg
      301 ctggggaaat atctccggcg tttggtttcc agaccggcgt tctttattat cacgcaaact
      361 ggattggtaa cttagccatc ggtattaccg cggtttctta tctttctacg ttcttcccgg
      421 cattaaataa tccaataccg gcaggtattg cctgtattgc tatcgtctgg ctgttcacct
      481 ttattaatat gctgggcggg gcctgggtca gccgcttgac aacgattggc ctgtttctgg
      541 tgctgatccc ggtagtcttg accgcagtcg ccggctggca ttggttcgct atcgcgacct
      601 atcacgcgaa ctggaacacg tctacgacga ccgactctca cgccattgtt aaaagtattc
      661 tgctctgcct gtgggcgttc gttggcgttg agtctgccgc cgtcagcacc ggcatggtga
      721 aaaacccgaa acgcaccgta ccgctggcaa ccatgctggg taccgcgctg gcaggcatca
      781 tctatatcgc cgcgactcag gttatcgccg ggatgttccc agcttccgtt atggcctctt
      841 ccggcgcgcc gttcgctatc agtacctcca cgattctggg tggctgggct gcgccgctgg
      901 tttccgcctt taccgctttc gcctgcctga cgtctctggg ctcctggatg atgctggtcg
      961 gccaggctgg ggttcgcgcc gccaacgacg gcaacttccc gaaaatttac ggtgaaatgg
     1021 ataaaaacgg tattccgaaa aaaggtctgc tgttggctgc ggtgaaaatg acggcgctga
     1081 tgattctgat caccatcatg aactccagcg gcggtaaagc gtccgacctg ttcggcgaac
     1141 tgaccgggat tgccgtactg cttaccatgc tgccgtactt ctactcttgt gttgacctga
     1201 ttcgtttcga agggttcaac atccgtaact cggtaagcct gatttgttct gtactgggct
     1261 gcgcattttg cttcatcgca ctgatgggcg ccagctcctt cgaactctcc ggcaccttta
     1321 tcgtcagtct gatcatcctg atgttctacg gtcgcaaaat gcaccagcgc cagaacaacg
     1381 acagcgacaa caatacggct gaagcgcttt aaccgctaac tcctttttct caaagcccct
     1441 ttcgtcacct gctatagcgt agcgggaggg gcccacttta ccaggaacaa gactatgaac
     1501 gttattgcta tcatgaacca catgggcgtc tactttaaag aagagcctat tcgtgaactg
     1561 catcgtgcac tggaaggttt aaatttccgt atcgtctatc caaacgaccg agaagacctg
     1621 ctgaagctga ttgaaaataa ctcccgcctt tgcggcgtca ttttcgactg ggataaatat
     1681 aaccttgagc tttgcgaaga gattagcaag ctgaacgagt atatgccgct gtatgccttc
     1741 gccaacagct actctacgct ggacgtcagc ctcaacgatc tgagaatgca ggttcgcttc
     1801 tttgaatatg ctttaggcgc cgcagccgat atcgcggcga aaattcgcca gaataccgat
     1861 gaatacatcg acaatattct gccgccgctg acaaaagcac tgttcaaata tgtgcgcgaa
     1921 gggaaataca ctttctgtac gcctggccac atgggcggta ctgctttcca gaaaagcccc
     1981 gtcggcagca tcttttatga tttcttcggc ccgaacacga tgaaatccga tatttcgatt
     2041 tccgtttccg aactgggttc gctgctggac cactccggcc cgcataaaga agcggaagag
     2101 tatatcgccc gcgtctttaa cgccgaacgt agctacatgg tgacgaacgg cacctctacg
     2161 gcgaacaaaa tcgtcggtat gtactccgcg ccggcaggca gcacggtact gattgaccgt
     2221 aactgccata aatcgctgac ccatctgatg atgatgagcg acattacgcc gatttatttc
     2281 cgcccaaccc gtaacgccta cggtattctt ggcggtattc cgcaaagcga gttccagcac
     2341 gccactatcg ctaaacgggt aaaagagacg cctaacgcca cctggccggt ccatgctgtt
     2401 attactaact caacctatga cggtctgttg tataacactg actacatcaa gaaaactctg
     2461 gatgtgaagt ccattcattt tgactccgcc tgggtgcctt acaccaattt ctcccctatt
     2521 tatcagggta aatgcggtat gagcggcgac cgtgtagaag gcaaaatcat ttatgaaacc
     2581 cagtccacgc ataaactgct ggcggcgttt tcacaggcat ccatgattca tgttaaaggc
     2641 gacattaacg aagaaacctt taacgaagcc tacatgatgc ataccaccac ttctccgcac
     2701 tacggtatcg tagcgtctac tgaaaccgca gcggcgatga tgaaaggtaa tgcgggtaaa
     2761 cgcctgatta acggctctat tgaacgtgcg attaaattcc gtaaagaaat taaacgcctg
     2821 aaaagcgaat ctgacggctg gttctttgac gtatggcagc cggaacatat cgatggagct
     2881 gagtgctggc cgctgcgttc agatagcgca tggcatggct tcaaaaatat cgataacgaa
     2941 cacatgtacc tcgacccgat caaagtcact atcctgacgc cggggatgaa gaaagacggt
     3001 acgatggatg aattcggtat tccggcaagt ctggtcgcca aatatctcga tgaacgcggc
     3061 atcatcgtag aaaaaaccgg tccatacaac ctgctgttcc tgttcagcat tggtatcgac
     3121 aaaaccaaag ctctgagcct gctgcgcgcg ctcactgaat ttaaacgcgc ctttgacctg
     3181 aacctgcgcg tcaaaaacat tctgccggca ctgtatcgcg aagcgcctga gttttatgaa
     3241 aatatgcgca tccaggaact ggcgcagaat attcataaac tggtcgaaca tcataatctg
     3301 ccggacttaa tgtaccgtgc gtttgaagtg ctgccgaaaa tggtgatgac gccgtatact
     3361 gcgttccaga aagagctgca tggcgaaacg gaagaggtgt atcttgaaga gatggttgga
     3421 cgcgtcaacg ccaacatgat ccttccttac cctccgggag tgccgctggt gatgcctggt
     3481 gaaatgatca ccgaggaaag ccgtccggta ctggaattcc tgcaaatgct gtgcgaaatc
     3541 ggcgctcact atccgggctt cgaaaccgat atccacggcg cctatcgtca ggctgacgga
     3601 cgttacaccg ttaaggtgct gaaagaaaat acgaaataag taccaaaggg aagtggcttg
     3661 ccacttccct tttttcacgc agcaaggaga ctttatgaaa acaccctcac aaccgcgcgc
     3721 gattttttac atcgtggcga ttcaaatttg ggaatacttc agcttttacg gcatgcgtgc
     3781 cttactcatc ctttatctta cccaccagct tggttttaat gacagccacg cgatcaacct
     3841 cttcagcgcc tacgcctctt tagtttacgt tacccctatt cttggcggct ggcttgccga
     3901 ccgcctgctt ggcaaccgcg tggcggttat caccggcgcc ttattgatga cgctgggtca
     3961 tgtggtattg ggcttagaat ctgattcaac gctgagttta tatgcggcgc tggccattat
     4021 tatctgcggc tacggcttgt ttaaatccaa tattagctgt ctgctgggcg aactttacgc
     4081 ccctgatgac aaccgccgcg acgggggatt ctcgctgctc tacgccgccg ggaatattgg
     4141 atcgatagcc gcgccgatcg cctgtggtct ggcggcgcag tggtatggct ggcatgtcgg
     4201 ctttgcgctg gcgggcgtcg gaatgttcat cggcctgctc atctttttaa gcggtcatcg
     4261 ccactttcag cagacgcgcg gtgttaatcg ccccgcgctg cgggcggtta aattcgccct
     4321 tccaacctgg ggttggctgg tattaatgct gtgtatcgcg ccggtattct tcaccctcct
     4381 gctggaaaat aactggtctg gctatgtgct ggccattgtc tgcgtcttcg cggcgcaact
     4441 tatcgcccgt attatggtta aatttcccga acaccgtcgc gccttgtggc aaatcgttct
     4501 gttaatgatc accggcactc tcttttgggt tctggcgcag cagggcggaa gttcgatcag
     4561 tttattcatc gaccgttttg tcaaccgcca ctggctgaat atgaccgtcc ccaccgcatt
     4621 gttccagtcg gtcaatgcga ttgcggtgat ggcggcgggc gtggtgctgg cgtggctgag
     4681 cagcccgaaa gagagcgccc gctcggtgct gcgcgtctgg cttaaatttg ccgtggggct
     4741 gatattaatg ggcggcggtt ttatgctgct ggcgctaaac gcgcatcagg cccggttaga
     4801 tgggcaggca tcaatgggaa tgatgatcgc agggctggcg ctgatgggct ttgcggagct
     4861 gtttattgat ccggtcgcga tggcgcaaat tacccgcctc aatctgcctg gcgtcacggg
     4921 cgtactgacc ggtatttata tgctggcgac cggcgcgatc gctaactggc tggctggcgt
     4981 cgtcgcgcaa caaaccacgg aatcgcaaat tagtgatacg gcggtagccg cctacggaca
     5041 ctttttctcg caaatgagcg agtggacact aagttgcgtg gcgctgatcg tcgccattgt
     5101 cggcctgaga tggatttgca cccggactac atcggcgcta ccgcagggcg attaaacggt
     5161 ggttcgctgc ccacaaggag gagacgggca gcgaatcggc acatcagata gccgcgtcgt
     5221 cttcttcgcc agtacggata cgaataacgc gggcgacatc aaagacaaag atcttaccgt
     5281 cgccgatttt ccccgtctgc gcggtacgaa tgatggtatc aacacaggta tccacgatgt
     5341 cgtcaggcac aacgatttca atttttacct tcggcagaaa atccaccata tattccgcgc
     5401 cgcgatacag ctcggtgtgg cctttttgac ggccaaagcc tttgacttca gtgaccgtca
     5461 taccggtaat acctacctcg gccagcgctt cacggacatc gtccagcttg aagggtttaa
     5521 taatcgcatc aatctttttc atgctattcc ttgaaaaggt cgcctgtgtt ttgatcggtt
     5581 aaacgtaaca tatttcgcgc tactttacgg catgaaaact actctttgaa atcattcgca
     5641 tccagttcgt gacgggagag tagcttatag aattccgtgc ggttgcgccc cgccatcctt
     5701 gccgcgtgcg tcacgttacc tttggtaatt tgcagtaact tgcgcagata gttcagttca
     5761 aattggtttc gcgcttcggc aaaagttggc agcgcggtgt tttcgccttc cagcgcctgc
     5821 tcgaccaatg catcgctgat caccggcgaa gaggttaacg ccacacattg ttcaatgacg
     5881 ttgaccagtt ggcgcacgtt gcccggccag cttgccgtca tcagccgttt cattgcatca
     5941 gtagaaaagg cgcgaacaaa cggtttatgc cgctgtgccg actgtctgag cagatgatta
     6001 gccagcagcg gaatatcctc ggtacgctcc gccagcgccg gaattttcag gctcacgaca
     6061 ttcagccggt agtacaaatc ttcacgaaat tcgccccgcg ccatcgcctt cggcagatcg
     6121 cggtgcgtcg cggaaataat tcgcacgtcg atatcaatat cgcgattgct gcccagcggc
     6181 ctgactttgc gctcctgtaa cacccgcagc agcttcacct gtaacggcgc gggcatatcg
     6241 ccaatttcat ccagaaacag cgtgccgcct tccgccgcct ggaacaaccc ttcacgattg
     6301 ctcactgcgc cggtaaaggc gccgcgcgca tggccgaata attcggactc cagcaactgt
     6361 tccggtaacg cgccgcagtt gatggcgaca aacggcttgt tattgcgcgg gctggcatta
     6421 tgaatcgcct gtgcgaaaat ctctttcccg gtgccgcttt gtccgttaat caatacgctg
     6481 acatccgact gcgcgaccat gcgcgcctgt tcaagcagtc gcagcatcag cgggctacgg
     6541 gtaacgatag cgttgcgcca gctatcgtcc gtcgcgggag cggactgctc cagcgcttca
     6601 tctatcgctt tatataacgc gtctctgtcg atcggcttcg tcaaaaagct gaatacgccc
     6661 ttctgggtag cggccaccgc atccggaata gaaccatgcg ccgtcagaat aataaccggc
     6721 attcccggct gtactttctg aatttctgtg aacagttgca taccatccat ttcgtccatg
     6781 cgcaggtcgc ttattaccag atccactttt tcccgatgca gtacccgtag tccttcctgg
     6841 ccgctctctg cggtcacgac gctgtatcct tcactggtca ggcgcatacc gagcaatttc
     6901 agtaatccgg gatcgtcatc gaccagcagc aggtgcgccg gtttacggct tatcatggcg
     6961 ttacctcatc ttgtgacggc gacggcgccg cgccatcttc agacgtcgcg ggtttgtcat
     7021 tcgtatgcgg cgtatcggcg ttgtaattcc ctgccggttt tcgtgtcgaa agctggcgct
     7081 caatgtcggt taaactctcc agcttacggg tagtaagatc gagctgcgtt tgcaaggcct
     7141 gttgctgctg gcgcaacgca tccagctcac tatctgacgt ttgctggagt ttgctataac
     7201 gctgacgttc ggcagaaagc gctaattgca gcgcctgacc gtcatgccag atttggtaga
     7261 cgggccgtac ctgagccggt atttgcgcgc ttaacgcctc cagacgggtc actatggcgc
     7321 gccgctccgg cggcgtaatt tttgcatccg ccagtaaaat cccgcgcctg aaggcattct
     7381 gccagttatc atccgtcaac gagcgcgcct ctgcgcgcga ctgaaccggc atcagacgat
     7441 cggcgcagtc aatcgtgcgt agccagtaca gcggattcgt ctccaccgcc tgcccgcgta
     7501 gcgaccagat atccgcgcac gccgtcggga gataatccgc cagttgataa tgggggagcg
     7561 tgtcctgcgc tgcgctaccg ggcagttgct gtgaagcatg gggaacacat gcggtcagcg
     7621 ccagacacga tatgcccacc ggtattcccc atcgcaaaag gcatcgttta atagtttgga
     7681 cgaaaacgtg tgacatacgc accaggctta aattcatatt agtgtttgtc agatgcaggc
     7741 aatggcagcg agatgcgaaa acaaacttcc tgcgctttgt catccaccag ctggatctct
     7801 ccctgcattc gacgaataca atctctggcg atactcagcc ctaacccact gccttttacc
     7861 gccccttttc gctggtggct tccctggaaa aaaggctcaa aaatcatttc tctttcggtt
     7921 tgcggaatcg gttcgccgct attaaccaca tcgatataaa ccgtggagcc ctgagagcga
     7981 ctacggatac aaatgttacc ggattcagcg ccatagtgca cagcgttgga atagagatta
     8041 tccagcacgc tcatcagcaa catgggctct gctatgcagc gttcggcctc caggtcgaca
     8101 tcggtatgca tcattttagc gcgggcaggc aaactgtggg cggaaaccac catatccaca
     8161 agcggcgcga tatcgaccgc ttccagctct gtggcactgt ctaccagttt ccggttgtaa
     8221 tcaagcaatt gctcaatcaa tttttgtaaa ttacgactgc tgtcatccag aatatcgacc
     8281 acctcttttt gctccggcgt cagcggccca accacctgat cggccagcag ctctgtcccc
     8341 tcgcgcatac tggccagcgg agttttcagc tcatgggaca agtgacgtag aaactgatgg
     8401 cgttgggatt ccagccacgc cagacgctca ctcagccaga taatgcgctg ccccaccgat
     8461 cgtaattcac gcggaccggt aaaggtgacg gtattcccca aagaacggcc ttcgcccagg
     8521 cgattaatca tccgttcaat tcctttcacc ggcccgataa tcatgcgggt aaaaagtagc
     8581 accatcgcca ggctcaccag aaatagcacc agcgcctgcc agccgaaaaa ttgtccgcgc
     8641 tcggcgattt cttgttgtaa ctgctgcccg cgcgagtaaa ccacagtacg cgtcgcctgc
     8701 accatttccg tattcgcgtt ggcaaaggcc tccagacgcg cggccgctgc cgcttccggg
     8761 ccgctatctt tacactgcaa ttgcgccagc gcgtttaaat cctggcgtaa cgcctgatac
     8821 aacttatcat ccggcaagac gccggcatgg gcatccagca tatcgctata gcgcttacgc
     8881 tggctttgat acacttttgt cagcgtcgga tcgtcaagca cgcaatactg tcggtagctt
     8941 cgctccatct ccagcgcgac gttggtcatc gcctcgctgc gccgggcgtc aataagcgtg
     9001 ctgcggttag tcaccgcagc ctgatcgctt aacgcgttaa ggctttgcca cgcctgccag
     9061 gccagaacca gcaacggcag caggatcagc aaaaaggcca gcatgaccaa ttgtcgtaaa
     9121 gaacggggga aaacagacca gcgcttcaac gtgtcgctca cataaaaaga agaataaaaa
     9181 agatgctaac cgaggggagc gtcagataca acaaagccgg gctaaacccg gctttgttat
     9241 ggaataaggc ggtgcctaac tcgacgtttc gcccggaggt tgataaagct acgctattat
     9301 cagaagttag acggcaggca ccttgttgtg cgtcattcga agtttatgta gcgcgtccct
     9361 aaggggctga cataagaagg tgaatgagcc actggttacc attatgcagt aattgtgcca
     9421 acattcaaaa gactttgtta acacaatgat agatatgaaa aatatcgtta ttcatgctaa
     9481 aaatggctct gtctgttttt tgtcccttct gtcgtcaatc agcaacacct gcaacaccta
     9541 aaaataaaat catttaaaat caaatagtta aatgtctctt tttggcgaca acctatcccc
     9601 actcatgtcg ggatttcccg acactttaat cttgcggcat aagcgctagt ttattgccgg
     9661 atggcggcgt aaacgcctta tccgccctac cgcttgacgt tcaagacggt agctacaacc
     9721 gcgcttcccc gtgggcctga taagcgccgt ctacaaaaaa gcccctcgtg aagaggggct
     9781 taatggctat cgggctaatt aaccaagctg cttacgcgca ttacggaaga tacgcatcca
     9841 cgggctatcc tcgccccagt tttccgggtg ccaggagttg gcgacggtgc ggaatacgcg
     9901 ttccggatgc ggcatcataa tcgtcacccg accgttttcg gtcgtcaccg ccgtgatgcc
     9961 gttcggcgaa ccgttcgggt tagccggata ggtttcggtc accttaccaa agttatcaac
    10021 gtagcgcaga gcgaccaggc ctttgctctc aagcgcggca agatgcgcat cgtcacgcac
    10081 ctcaacgcgc ccttccccat gggaaaccgc aatcggcatc tgtgagccta ccattccttg
    10141 cagcagcagc gatgggcttt gcgtcacttc caccaggctg aagcgggctt cgaagcggtc
    10201 agaatggtta cgtacaaaac gcggccacag ttcgctgccc gggatcagct cgcgcagatt
    10261 cgacatcatc tggcaaccgt tgcacacgcc cagcgccagc gtctgcggac gatggaagaa
    10321 ggtttcgaat tcgtcgcgca cccgatggtt aaacagaatg gatttcgccc agccttcgcc
    10381 cgcccccagc acgtcgccgt aggaaaagcc gccgcaagcc accagcgcat ggaagttgcc
    10441 cagaccgata cgaccgccca gcaggtcgct catatggacg tcaatcgcgt caaagcccgc
    10501 acgatggaac gccgccgcca tctccacgtg agagttcacc ccctgctcgc gcagtacagc
    10561 gactttcggt cgtgcgcctg tcgcaatgta cggcgcggcg atatcttcat taatatcaaa
    10621 cgacagcttc acgttgaggc ccggatcggc atcattcgct ttcgcctcgt gttcctggtc
    10681 agcacattgc ggattgtcgc gcagacgctg catctgccag gtggtttccg cccaccagac
    10741 acgcagcgta gtacggcttt cgctgaatac cgtccgatca ttagcggtaa tcacaaagcg
    10801 atcgccagcc agggcctgac caaggtagtg gacgcagtca gcaagaccgt actgcgccaa
    10861 cagcgtttcg accgcgtctc tgtcttcagc gcgtacctga atcacgccgc ccagctcctc
    10921 gttgaacagt gcggccagat ggtcatcgcc cagcgcggcg atatcgacct gcacgccgca
    10981 gtggccggca aaggccatct cggccagcgt caccagcaga ccgccgtcgg aacggtcgtg
    11041 ccatgccagt aatttacgcg cagcaaccag cacctgcatg gcgtcataga agcctttcag
    11101 ttgcgcaacg tcacgcacgt ccgcgggttt gtcgccaagc tgacgataga cctgcgccaa
    11161 cgccgttgcg cccagcgcgt tgtggccctt gccaagatcg atcagcagca aggcgttatc
    11221 ttccgttgac agctgcggcg taagggtgtg acgcacgtct tccacgcggg caaacgcgga
    11281 aatcaccagc gacagcggcg aggtcatttc gcgctgttcg ttgccttcct gccagcgggt
    11341 tttcatcgac atcgaatctt tacccaccgg aatcgtcagg ccaagctgcg gacagagttc
    11401 ctctcccacc gctttaaccg cgtcatacaa accggcatct tcgccaggat gaccggctgc
    11461 cgccatccag ttagcggaaa gcttaatgcg cttgatatcg ccaatctgcg tcgcggcaat
    11521 gttagtcaac gcttcaccga cggccagacg ggcggaggcg gcaaagtcca gcagcgccac
    11581 cggcgcgcgc tcgccaatcg acatcgcttc gccgtagtag ctgtcgaggc tagcggtagt
    11641 gaccgcgcag tcagctaccg ggacctgcca cgggccaacc atctggtcac gcgccaccat
    11701 accggtgacg gtacggtcgc caatagtgac aaggaaggtt ttttccgcca cggtcggcag
    11761 atgcagaaca cgatttaccg cgtcggcaat cgtgatatcc gcgcggttca gcgcatcgcc
    11821 tttcgccttc aatgtttgca catcgcgggt cattttcggt gttttgccca gcaggacatc
    11881 cagcggtaga tcgatcggct gattgtcgaa atggttatca tgcaacgaga gatgctgttc
    11941 ttcggtagcg tcgccaatga ccgcatacgg cgcgcgttcg cgcttacaca gttcatcgaa
    12001 cagcggtaac tggtcagccg cgaccgccag cacatagcgc tcctgggatt cgttacacca
    12061 gatttccagc gggctcatgc ccggctcgtc gctaagaatg tcgcgcagtt cgaatttccc
    12121 gccgcgcccg ccgtcgctta ccagctccgg catggcgttg gagagaccgc ccgcgcccac
    12181 atcatggata aacaggattg ggttagcgtc gcccaactgc cagcagcggt cgatcacttc
    12241 ctggcagcgg cgttccattt ccgggttgtc gcgctgaaca gaggcaaaat cgagatccgc
    12301 atcagactgg ccggaagcca ttgacgatgc cgcgccgccg ccgaggccga tattcatcgc
    12361 cgggccgcca aggacgatca gcttcgcgcc tacgacgatc tcgcctttct gcacgtgatc
    12421 ggcgcggata ttaccgatcc cgcccgccag catgatcggc ttgtgatagc cacgcagctc
    12481 ttcgccattg tggctgttca ctttctcttc ataagtacgg aagtaaccgg tcagcgccgg
    12541 gcgaccaaat tcgttgttaa acgccgcgcc gcccagcgga ccttcggtca tgatatccag
    12601 cgcggtgaca atacgttccg gcttgccaaa atcctcttcc cacggctgtt caaagcccgg
    12661 aatacgcagg ttggaaacgg agaagcctac cagcccggct tttggtttcg cgccacgccc
    12721 ggtggcgcct tcatcacgaa tttcgccgcc ggaaccggtc gccgcccccg gccacggaga
    12781 gatggcggtt gggtggttat gcgtttcgac cttcatcaga atgtgcgcgg gctcctgatg
    12841 aaaatcgtaa cggccggtat tgtggtcggc gaagtagcgc cccaccgcag atccttccat
    12901 caccgcggca ttgtctttat aggcagagag cacatagtcc ggcgtggttt cgaaggtgtt
    12961 tttaatcatt ttaaacagcg acttcggctg cggtttaccg tcgataatcc agtcggcgtt
    13021 aaaaatcttg tggcggcagt gctcggagtt cgcctgggcg aacatgtaca gttcgatatc
    13081 gttcgggttg cgtcccagtt tggtaaacgc ctcctgcaaa tagtcgattt catcttccgc
    13141 cagcgccaga ccgagacgca ggttagcgtc aattaacgcc tgacggcctt ctcccagcag
    13201 atcgacactg gaaaccggcg caggctgatg gtggataaac agtttttccg catcggttaa
    13261 agaagagaac accgtctcca tcatacggtc gtgcagctct gcggccactt gtcgccactg
    13321 ttccgccgtc aacgtcgaag cctcgatata gtacgctacg ccgcgctcca gacggtcaat
    13381 ctgttgcagg ccgcagttgt gggcgatatc cgttgctttt gaagaccagg gggagatggt
    13441 accaggacgc ggtgtgacca acaggagttt acccgccagc gtatggctgc taagcgccgg
    13501 gccgtattgc agcagacggg taagctgcgc ctgctcgcta tcatttaacg gggcgttcag
    13561 gtcagcaaaa tggacatact cagcgtatat attgtggacc tggaggttgg cagcctgaaa
    13621 gcgcgccagc agtttattga tacggaatgc agacagtgca ggcgaaccac gcagaatttc
    13681 catcataagt ctctcgtctt ctaagcttcg gtgtgcgcaa ggggggaaac ggccgccatt
    13741 ataaagaatc tgacgcgccg acgaaaccgt ttgcgtagaa ataaaatcac cgctttttct
    13801 tgtcatacgg tgcggctatc gttgcgaata agttgccaac tggcgcattg ttacgcaaaa
    13861 tgccgctcat tagtgactta tctattgcag caaaacatct ttttcagccc gaggcaacgc
    13921 acgatccaga gaattaacta attgaaaaaa ttaaagatta attatctgtt catcggcata
    13981 ttgacgctgc tgctggcagc agccctttgg ccctcaatcc cctggttcgg taaaaccgaa
    14041 aaccatatcg ccgcgattca agcccggggg gtactgcgcg tcagtacgat cgactcgcca
    14101 ttaacctatt ccgttatcaa cggtaaaaaa tatggtctgg actatgaact ggcgcagcag
    14161 ttcgccaact atctcggcgt gaagctgaaa gtgacggtgc gccagaatat cagccagttg
    14221 tttgacgatc tggataacgg caatgccgac ctgctcgcgg cagggctggt ctacgacagc
    14281 gcgcgcgtta aaaactatca gcccggcccc atgtattatt cggtttcgca acagctcgtt
    14341 taccgggtcg gacaatatcg cccacgttcg ctggcgaccg ttaacgagaa tcagcttacc
    14401 attgcgccag ggcacgtcgt ggtcaatgat ttacagcgtt taaaagagac aaagtttccc
    14461 gacctgagct ggaaggtgga tgataaaaaa ggctcgacga cgctgctgga agaggtcatc
    14521 agcggcaaac tggattacac cattgccgat tcagtggcga tcagtctgtt tcagcgcgtc
    14581 catcccgaac tggccgtggc gctggatgtc acggatgaac agcccgtgac ctggtttagc
    14641 cgactggacg acgataatac gctctccgcc gcgctgctcg attttttcaa ttcgatcaat
    14701 gaagacgggt cgttggcgcg gatcgaagag aaatatctgg ggcatggcga tgatttcgac
    14761 tacgttgata cccgctcttt cctgcgagcg gtggataacg tcctgccgga gctggaaccg
    14821 ttatttaaaa aatatgccaa agagatagac tggcgcctgc tggcggcgat ttcttatcag
    14881 gaatcacact gggacccgct ggcgacctcg ccaaccggcg tgcgcggcct gatgatgctg
    14941 actaaaaata ccgcccaaag tctggggctg accgaccgta ccgatgcgga gcaaagcatc
    15001 agcggcggtg ctcgctatct tgaagatatg atggctaaag ttcccgaaac cgttccggaa
    15061 gacgagcgta tctggtttgc cttagccgcc tacaatatgg gttatgcgca catgctcgat
    15121 gccagatcgc tgacggtaaa aaccaaaggc aatccggata gctggaccga tgtgaagcag
    15181 cgtttgcctc tgttaagcca aaaaccgtat tacagtaagc taacctacgg ttacgcgcgt
    15241 ggacatgagg cttatgctta tgtggaaaat atccgtaaat accagataag tttggtgggg
    15301 tatttgcagg aaaaagaaaa gcaggaagcg gaagctatga aactggcgca ggattacccg
    15361 gcggtgtagc cggaggagct gaataaagcc cccttcccct tcctgtcgtt tttatcgcag
    15421 tcatcaggct acctgacgca ttcgccgtct ttactgttta cgccgcagaa gaaagaagaa
    15481 aaatagcgcg atggtcttat cggatggcga cgcgcaacgt cttatccggc attgcgctat
    15541 actgccggcc ccgcgccttc cgcacggtcg gctttcttca gagctttaat ttcctgacga
    15601 cgcatacgga aaaaatcact gagcagcgtc gcacattcat cgcgcaacac cccttcaata
    15661 atctcgaccc ggtgattcat tcccggatgg tgcagcacgt caattagcga tccggccgcg
    15721 ccagtttttg catcgcgcgc gccaaagaca acgcgtccaa tgcggctatg caccatagcg
    15781 cctgcgcaca tcacacaggg ttccagcgtg acatacagcg tggtatccag taaccgataa
    15841 ttctgcaata ccagaccgcc ctgacgcagc gccattattt cagcatgcgc agtaggatcg
    15901 tggcggccaa tgggtcgatt ccagccttcg ccaatgacgc gatggttatg caccaatacc
    15961 gcgccaaccg gaacctcgcg ttcgtcccag gcgcgtttcg ccagcgtcag cgcgtggcgc
    16021 atccagtatt cgtgatctaa ttcgacatca gacaaagagg taactccggt aatgaaagcg
    16081 ggcggcatta tacacagacg ctatgcgttt cactattcga gctgctgcaa ctcgccgtgc
    16141 ggcgtcaccc gccagcgatg ctggcaaaaa taaagcagcg ggttatcctg tttgctgtcg
    16201 ctgtagccgc tataaagacg caacggcgta ccgattttac gttccagttg cgcgactttt
    16261 tcatggccca gacagcgcac ggttaatacc cagccgccat accgtcgcgc catctggctg
    16321 gcgatgaggt taacacgcgg caaccacggc gtatcaaaat agacttgctc taccaatgat
    16381 tgcggagaac cggtaataag ccagatatcc gcgtcagagc tcaatagata ggtggtcaga
    16441 cgctcctgta cgaccggaaa cgccgtgacg ttagcgcgaa accaacggac aaaatccgcc
    16501 tgatgcgcct gcaaacgcgt ttcgctatgg ccaaaagtac agccccacaa taacagactc
    16561 atcggccagc gggccgcacg cccttttacc agtaaaccga taccgataat gggcaacaac
    16621 ggcagtacga gcagcgcatt tagcggctga cggcgcagca aataacgcag aaaactgccg
    16681 aacatatcct gttgatataa cgttccatcc aaatcaaaaa agacgacacg acgctcgtgg
    16741 ctgaccaaac cttactcctc tggatcattg aaccccagca gccaggtaaa aataaacccg
    16801 gcaattaccg ctattaaata gcctaacaga tagaacagga cttttccggc aacaattgtt
    16861 aatgccagcg gcaaaccgga aataccaaag gtaattaccg tcgccacttt ccagtagctg
    16921 atcaacgccc cgcctaccgc gccgccgagg caagcgccaa taaatggctt acccaatggc
    16981 agcgtgacgc caaaaatcag cggctcgcca atccccagca gtccgaccgg aagcgcgcct
    17041 ttaatcacct ttttgagccg cgcattgcgg gttttcatca gtacggcaat ggccgcgcct
    17101 atctgaccaa cccccgccat cgccaggatg ggaaacagcg cgttatagcc gtgcgcttgc
    17161 accagctcca catgaatagg caccagcccc tgatgcagcc cgatcagtac caacggcagg
    17221 aaggttccgg ctaacaccgc gcccaccaga aaaccgccgc gatcgatagc ccaggacgcg
    17281 ccgtgagcga tagcgtctga aatccagccg ccaagcggtt gcagagcgac aatcgctacc
    17341 gcgccggtga taacagtcgt caataaaggg ttaagaatta actccagcga ccccggcagc
    17401 agcttacgga actggcgctc aatccagcac attaacgcca ccaccagcag gacggcgata
    17461 acgccgcccc gtcccggctg aagcgcctcg ccaaagagcg taatctgcgc cagttgcggg
    17521 ctggaaagga tccccgccat cacgccgcct aacgcctgcg atccgccaaa gactttcgcg
    17581 gtattgacgc caaccagaat gttcatgata gcgaacaccg cgctaccaaa tatccccatc
    17641 aggcccagca ggttaggata gtggacggca acatcgccga cgatatccgg gcgtttaaga
    17701 atattgataa tgccggtaat caagccggat gcgataaagg cgggaataag cggaataaaa
    17761 acattcgcca gcttacgcaa cgcatcgctc atcggcgctt tatacttcgc tttcgcctcg
    17821 gatttggtac gcgccatagc atcgtccggc tttacaccac ctgcggcaat ctgcacgcgc
    17881 atcgcatcaa ccacctgtgc agccttcccc ggcccaacga tcagctgatg ttgctcccct
    17941 tgctttacgt atccactgac gccaggcaac gcttttaagc gcggaatatc cagttggctg
    18001 tcgtcctgta cctccactct gactcgcgtc atacagtttt ccaggcgcag aatattttgc
    18061 tctccgccga taccacgtaa aatgtcgctg gcgagcgctg ccgtcttatc catacacacc
    18121 tctttagtgt tctaacgccg cccttaaaaa gccctgatga gcggcgagtt tttccctggc
    18181 ggctgcagca tccagccccg taagcgccat caaaatggcg ggcttaacct caaaatcggt
    18241 ctgtttcagc aacgtttccg cctcttcacg acctatcccg gtcgcttcaa cgaccatccg
    18301 acacgcgcga tcgaccagtt tgacgttggt ggctttcata tccaccatca ggttctgata
    18361 gaccttaccg aacttcacca tcgcgccggt agaaatcata ttgagcacca ttttctgcgc
    18421 ggtgccggat ttcagccgcg tggagccggt aagcgcttcc ggcccgacaa cgggcgaaat
    18481 agcgatatta gcctcccgcg caataggcga atctggatta caggagacgg caacagtggt
    18541 acaaccggac tgtcgcgcat agcgcaggcc accaatcaca tagggtgtac gacccgacgc
    18601 cgcgagcccc acgaccagat cctgttcttg cagatttagc gcgacaagat cgtcttcgcc
    18661 tgcctgttgg ctgtcttccg cgccttcgac cgccttcagc aacgcgcccg gcccgccggc
    18721 aatcagcccg acgaccagac cgtgcggaac gccaaacgtc ggggggcatt ctgaggcatc
    18781 cagtacgcca agccgaccac tggtgcccgc ccccatatag atgatacgtc cgccagactt
    18841 cagcgccgcc gcagcagcat ccaccgcacg cgcaacgtca ggcagagtgg cttttactgc
    18901 ttccgctacc agcgtatcct gttcattaaa acgcttaact aattcaggag tagacaacgc
    18961 atccagatcc atcgtttgcg ggttacgggt ttcagacact aaggcaccaa gattcatttt
    19021 tgtccctctg gaatttttaa ttcataataa gcgtccatga tggaatagaa tattccccca
    19081 ggcgagtgaa atttcgtttt gtcgtcgcca tcacgtttcg caggagctgc ccatgaactg
    19141 tttgattcgt attcgccagc gttatccgga tctcgcgcaa agcgacagga aactggcgga
    19201 ttatctgctc gcgcaaccgg atacggcgcg acatctgagc tcgcagcaac tggcggccga
    19261 agcgggcgtc agccaatcca gcgtagtcaa gttcgcgcaa aaactggggt ttaaagggtt
    19321 tccggcgttg aaactggcta tcagcgaagc gttggccagc aatcctaatc cgcattccgt
    19381 tcccgttcat aaccagattc gcggcgacga tccgatgcgc ctggtcgggg aaaaattaat
    19441 taaagagaat gtggcggcga tgcacgccac gctggacgtt aacagtgaag aaaagctgtt
    19501 agaaagcgtc acgatgctgc gccacgcccg ccgtattgtg atcaccggaa ttggcgcctc
    19561 tgggctggtg gcgcaaaatt ttgcctggaa gctactgaag attggcatta acgcggtggt
    19621 tgagcgcgat atgcacgccc tgctggcgac ggtgcaggcg ctggcgccgg aggatctgct
    19681 gctggcgatc tcttattccg gggagcggcg cgagctgaac ctggcggcgg acgaaacatt
    19741 acgcgcaggc gcgaaaatcc tggccattac cggtttttct cccaacgcct tgcagcagcg
    19801 cgccacccgc tgtctgtata cgattgccga agagcaggcg acgcgtagcg ccgctatctc
    19861 ctcgacacat gcgcaaatga tgttgaccga cttactgttt atggcgctgg tacaacagga
    19921 tttagagcgg gcgccggagc gtattcgcca tagcgaggcg ctggtaaaaa aactggtttg
    19981 aaaatggctc ttccgcctca tgcagaagag ctatcaagtt tattgcgctt ctttagcgtg
    20041 aatcaattgc gtcaggagtg tgttaaccgg tacggcaata ttgttctgag cgccgattcg
    20101 cgcaatcgca ccatttaaat agtcgatttc ggtcagtcgg cctttatgta aatcctgatg
    20161 catagaagga tagtggtggc cgctctcacg cggatcgaac actttcttca ccgtattcat
    20221 caccatttgc tcagtcaacg gaatattctg gctggcagca actaacacaa actcatcaac
    20281 taccgcttgc gctaaatcta aagcaccagg ccgctgacca aatccgccga cattacaatc
    20341 cagtaacgcg caataggtgt tcattacgct attaaaggct gctttcttcc agatcgataa
    20401 taatacgtca gggcttattt cagcattcaa tccagcacta ttaagggtgg caatgacctt
    20461 agcctcttga gccgaatctt ggctggctat cggctgcagt tcaatcgttc cggtaccggt
    20521 ggccataata tgcccagccc cctccagttc gctggaccat aacgtcacac ccgcatagat
    20581 tttctgccga tcgacatatt tctccagggt ttcgatattt cccaggccgt tagataaaat
    20641 catcacgacc ttcgcggctg gcagcagcgg cttaatacgc tgtaacatgc tatccaactg
    20701 catggctttg gtaaacagaa taaccagctc aaactccccc tgggattcat cagccaacat
    20761 agcagggatg gggtaatact tctgagtcgt ttccgtttcg acaaacaacc ccttgctacg
    20821 aatagcgtcg acatgctcct gccagccatc aataagcgtc acgtcgtgcc cggcctccag
    20881 cagcatatag ccaaaacgac atcccatagc gcctgcacct gcgattgcaa ttttcatttt
    20941 tatttcctta ttatctgatt aatgaatttt ggctaaaacc gttgcgacat attttttcgt
    21001 tatcagggtc aacacgactc caataagcaa tagcaccgtt gtcaaaataa atactgtatt
    21061 gtagcttccg gtatattttg caatagcgga cgtgacgtaa ggagcaataa ccgcaccgac
    21121 ggcaaaacca aaatacataa agccgtagtt tagtccctgg ttacgcatac caaaattctg
    21181 gctggtcaag ccaaggaaga taactaatat accggcataa gcaaagccca cgcccagagc
    21241 gctgaaatag aataccgaag tattaccgtt gaagaacaac agcagcagca tacagacgca
    21301 ggtaaaaaga taaacaataa ccagcgtatt atagccgcct aatttatcgg ttaaccctcc
    21361 ccagaacagg cgaccgatcg agttaaatat cgagaccagg ctaacgacta atgcaccgga
    21421 cagtaaaccg tactgcgtca taccaatttg cgcagaactt gagctaatta ccatcccaga
    21481 gaacacgccc agcgccagaa tcataaacag cagccagaag cgcagatctt tcagcatgtg
    21541 ccgatagtct ttatccagtg gcgaggcttt aattcctccg ctatcttttg ctggcgcgct
    21601 acgaataaag aactggacga taaaaataac caccagataa acaataccca gatataacaa
    21661 cgcccgacta acatcgtgag tttgcgccat aaaatattcg gccaggcggg tgcaaagtag
    21721 cgtcccgacg ccaacacccg ccagtacgat accgctggca agaccgcgac ggtcagggaa
    21781 aaatttcaga atattattaa gattacccgt aaaagccagg cccgatccca acccggcaat
    21841 gacgccgtag gttaaaaaca gcatgggcaa attatccaca aacccggaca agataaaacc
    21901 taaagaaaac aggataccgc cgataactat cgcctgcttt cctttaccat tgtcgatcat
    21961 tctcccgccc caaatcatcg gtaaaggaat gatccccata ttgatagaga atgctaacgc
    22021 cggcgtagcc ggatcccagt gatattgcgc catgagtggt gttttgaaat agctaaatgc
    22081 gtagacgccc ccgagcacaa aattgatgca cacgtgagcg gcaagcattc cccagcggtt
    22141 gattgatgcc gacataatt
//
LOCUS       DAJVSD010000049        22142 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.049, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000049 DAJVSD010000000
VERSION     DAJVSD010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 22142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22142
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.049"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            231..1277
                     /gene="ansB"
                     /locus_tag="OQP62_001559"
     CDS             231..1277
                     /gene="ansB"
                     /locus_tag="OQP62_001559"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2"
                     /protein_id="HCS1721143.1"
                     /translation="MEFFRKTALAALVMGFSGAAFALPNITILATGGTIAGGGDSATK
                     SNYTAGKVGVENLVDAVPQLKDIAVVKGEQVVNIGSQDMNDEVWLTLAKKINTECDST
                     DGFVITHGTDTMEETAYFLDLTVKCNKPVVLVGAMRPSTSMSADGPFNLYNAVVTAAD
                     KQSANRGVLVVMNDTVMDGRDVTKTNTTDVATFKAVNYGPLGYIHNGKIDYQRTPERK
                     HTTSTPFDVSKLTALPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKTVF
                     DTLATAAHNGTVVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQ
                     TKDPKQIQTMFNQY"
     gene            1410..2417
                     /locus_tag="OQP62_001560"
     CDS             1410..2417
                     /locus_tag="OQP62_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1202 domain-containing protein"
                     /protein_id="HCS1721144.1"
                     /translation="MVRQWIAGAALFALISGYSWAEVAQPSDNILKEQFSKQYHGILK
                     LDSITLKNLDSTGNQATWSAEGDISSREDMYTGVGMAADYYFVEKTWTKDRPVKFSAM
                     LTSKGTPASGWTVSYYSLQMAASDQGRAIDDIKTNDKYLIVNSDDFNYRFGNIEASWR
                     AQKASIPGLEEQLSALDKKIAVAKKEADAYWGKGADGKPLTRAEAFKKTLKERDDYVK
                     ANDSSVYAEKYEKEVYQPALDACRKQSEPCNEAAIQQKRDLDIHEQRRQVFLKSEELR
                     RKAQNDWITLEKGQYPLNIAVQKLQMQQSDIRMKIMDINDGYERWKKDTDDLRRKGVI
                     K"
     gene            complement(2508..3644)
                     /gene="hemW"
                     /locus_tag="OQP62_001561"
     CDS             complement(2508..3644)
                     /gene="hemW"
                     /locus_tag="OQP62_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HCS1721145.1"
                     /translation="MAKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLL
                     SDLDADVAWAQGREVKTIFIGGGTPSLLSGPAMQTLLDGVRARLNLAADAEITMEANP
                     GTVEADRFIDYQRAGVNRISIGVQSFSEPKLKRLGRIHGPQEAMRAARLANGLGLRSF
                     NLDLMHGLPDQTLEEALNDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALW
                     DIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNYWRFGDYLGIGCGAHGKVTFPDG
                     RILRTTKTRHPRGYMQGRYLESQRDVSDDDKPFEFFMNRFRLLERAPRAEFVDYTGLT
                     EAVIRQPIDEAIAQGYLTECEQYWQITRHGKLFLNSLLELFLAE"
     gene            complement(3637..4230)
                     /locus_tag="OQP62_001562"
     CDS             complement(3637..4230)
                     /locus_tag="OQP62_001562"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XTP/dITP diphosphatase"
                     /protein_id="HCS1721146.1"
                     /translation="MQKVVLATGNAGKVRELASLLSDFGLDVVAQTKLGVDSAEETGL
                     TFIENAILKARHAAKMTGLPAIADDSGLAVDVLGGAPGIYSARYSGENATDQQNLEKL
                     LHTLRDVPDDKRQARFHCVLVYLRHAEDPTPIVCHGSWPGVITRQAAGNGGFGYDPIF
                     FVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNG"
     gene            complement(4238..4528)
                     /locus_tag="OQP62_001563"
     CDS             complement(4238..4528)
                     /locus_tag="OQP62_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggU family protein"
                     /protein_id="HCS1721147.1"
                     /translation="MSAVTRCEDGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVD
                     GQANSHLTKFLGKQFRVAKSQIVIEKGELGRHKQVKIIHPQQIPPEIAALTE"
     gene            complement(4525..5091)
                     /locus_tag="OQP62_001564"
     CDS             complement(4525..5091)
                     /locus_tag="OQP62_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HCS1721148.1"
                     /translation="MNTLTFLLSTVIELYTMVLLLRVWMQWARCDFYNPFSQFVVKIT
                     QPIIGPLRRIIPPMGPIDSASLLVAFILSVIKAIVLFKVITFQAIIWIAAVLILLKTI
                     GLLIFWVLLVMAIMSWVSQGRSPIEYVLIQLAEPLLSPIRRILPAMGGIDFSPMVLVL
                     LLYVVNMGIAEVLQATGNMLLPGLWMAL"
     gene            complement(5110..5814)
                     /locus_tag="OQP62_001565"
     CDS             complement(5110..5814)
                     /locus_tag="OQP62_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HCS1721149.1"
                     /translation="MNDIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIA
                     EAIAAGQRAFGENYVQEGVEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHT
                     IDRLRIASRLSEQRPDNLPALNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRL
                     RGLMAIPAPESDYVRQFEVARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTM
                     VRIGTAIFGARDYTKN"
     gene            5832..6812
                     /locus_tag="OQP62_001566"
     CDS             5832..6812
                     /locus_tag="OQP62_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HCS1721150.1"
                     /translation="MNMEEIVTLSVKHNVSDLHLCNAWPARWRKQGRMETAPFTAPDV
                     DRLLLDWLNDAQQYQWRTHGQLDFAVSLSGTRRLRASAFTHQQGTSLAIRLLPERCPD
                     LAEIQTPPIVPALLASENGLILVTGATGCGKSTTLAAMVGHLNQHADKHILTLEDPIE
                     YRYTSKRCLIQQREIGQHCATFAAGLRAALREDPDVILLGELRDSETIRLALTAAETG
                     HLVLATLHTRGAAQAVERLVDSFPAQEKEPVRSQLAGSLRAVLSQKLEVDRQDGRVAL
                     FELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWRQAQGRL"
     gene            6942..7628
                     /locus_tag="OQP62_001567"
     CDS             6942..7628
                     /locus_tag="OQP62_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HCS1721151.1"
                     /translation="MSSQPNQSLIDGIRCLQYLVSSDRAIGCRELARLMDINTTRVNR
                     LLMTMASIGLTMQDEHRRYLPGPGIHALAAQAIRGSALFSHALPILERHAPRDIVVAL
                     GVLWEDQIIYIYHSTPGAQGSQALAGFRMCLAWQSVPGVALLAAESDEALMQRFSPEQ
                     WRNLAPHVAQQRQRGYVLWHHADGEVSMAQPLDKHAAALAFAGMWRIDEAEAAARLQA
                     LKALNQLIAQ"
     gene            complement(7675..8091)
                     /gene="ruvX"
                     /locus_tag="OQP62_001568"
     CDS             complement(7675..8091)
                     /gene="ruvX"
                     /locus_tag="OQP62_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HCS1721152.1"
                     /translation="MSDTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTL
                     IERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVTVTLHDERLSTVE
                     ARSGLFERGGYRALNKGKVDSASAVIILESYFEQGY"
     gene            complement(8091..8654)
                     /locus_tag="OQP62_001569"
     CDS             complement(8091..8654)
                     /locus_tag="OQP62_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HCS1721153.1"
                     /translation="MNLQHHFLIAMPALQDPIFRRSVVYICEHNQDGAMGIIINKPLE
                     NLQIEGILEKLKITPEPRDSAIRLDKAVMLGGPLAEDRGFILHTPPSRFASSIRISDN
                     TVITTSRDVLETLGTQQQPSDVLVALGYASWDKGQLEQELLDNAWLTAPADLNILFKT
                     PIAERWREAAKLIGIDILTMPGVAGHA"
     gene            complement(8870..9817)
                     /gene="gshB"
                     /locus_tag="OQP62_001570"
     CDS             complement(8870..9817)
                     /gene="gshB"
                     /locus_tag="OQP62_001570"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HCS1721154.1"
                     /translation="MIKLGIVMDPIAHINIKKDTSFAMLLEAQRRGYELHYMEMADLY
                     LINGEARACTRTLSVEQNYDKWYEFGSEQEIKLADLDVILMRKDPPFDTEFIYATYIL
                     ERAEEEGTLIVNKPQSLRDCNEKLYTAWFADLTPETLVTRNKAQLKAFWEKHGDIIMK
                     PLDGMGGASIFRVKEGDPNIGVIAETLTELGNRYCMAQNYLPAIKDGDKRVLVVDGEP
                     VPYCLARIPQGGETRGNLAAGGRGEPRPLSESDWEIARRVGPTLKAKGLIFVGLDIIG
                     DRLTEINVTSPTCVREIEAEYPISITGMLMDAIEARLAK"
     gene            complement(9837..10568)
                     /gene="rsmE"
                     /locus_tag="OQP62_001571"
     CDS             complement(9837..10568)
                     /gene="rsmE"
                     /locus_tag="OQP62_001571"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013319572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HCS1721155.1"
                     /translation="MRIPRIYHPELLTSGTQISLCEDAANHIGRVLRMGAGQALQLFD
                     GSNQVFDAEIISASKKSVEVQVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIEL
                     GVSLITPLFSERCGVKLDNERLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWC
                     AEQDSGLRLNLHPRAHASINTLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLG
                     PRVLRTETTALTAITALQVRFGDLG"
     gene            complement(10645..11352)
                     /gene="endA"
                     /locus_tag="OQP62_001572"
     CDS             complement(10645..11352)
                     /gene="endA"
                     /locus_tag="OQP62_001572"
                     /EC_number="3.1.21.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease I"
                     /protein_id="HCS1721156.1"
                     /translation="MYRNFSFAAALLAAAFSGQALADGINNFSQAKAASVKVNADAPG
                     SFYCGCQIRWQGKKGVVDLESCGYKVRKNENRARRIEWEHVVPAWQFGHQRQCWQDGG
                     RKNCAKDPVYCKMESDMHNLQPAIGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKAK
                     LAEPPARARGAIARTYFYMRDQYQLKLSRQQTQLFNVWDKQYPVTAWECERDARIAKV
                     QGNHNPYVQRACQARKS"
     gene            complement(11448..11945)
                     /locus_tag="OQP62_001573"
     CDS             complement(11448..11945)
                     /locus_tag="OQP62_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HCS1721157.1"
                     /translation="MKTPRLPIAIQQAVMRRLRENLAQANLKLDRHYPEPKLVYTQRG
                     TSAGTAWLESYEIRLNPVLLLENIDTFIAEVVPHELAHLLVWKHFGRKAPHGKEWKWM
                     MESVLGVPARRTHQFALQSVRRNTFPYHCQCQQHQLTVRRHNRVVRGEAVYRCVHCGE
                     PLVAG"
     gene            complement(12024..13418)
                     /gene="galP"
                     /locus_tag="OQP62_001574"
     CDS             complement(12024..13418)
                     /gene="galP"
                     /locus_tag="OQP62_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/proton symporter"
                     /protein_id="HCS1721158.1"
                     /translation="MPDNKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIT
                     DEFQITAHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAA
                     PNVEVLIISRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLS
                     DTAFSYSGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFHDAERVLLRLRDTS
                     AEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGILLQVMQQFTGMNVIMYYAPK
                     IFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAIGMGIL
                     GTMMHIGIHSPSAQYFAIAMLLMFIIGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTA
                     TNWIANMIVGATFLTMLNNLGNANTFWVYAGLNVLFILLTLWLVPETKHVSLEHIERN
                     LMKGRKLREIGAHD"
     gene            complement(13911..15065)
                     /gene="metK"
                     /locus_tag="OQP62_001575"
     CDS             complement(13911..15065)
                     /gene="metK"
                     /locus_tag="OQP62_001575"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HCS1721159.1"
                     /translation="MAKHLFTSESVSEGHPDKIADQISDAVLDAILQQDPKARVACET
                     YVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPD
                     INQGVDRADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPW
                     LRPDAKSQVTFQYDDGKIVGIDAVVLSTQHAEDIDQKSLQEAVMEEIIKPILPSEWLN
                     TSTKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAA
                     YAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPAEQLILLVREFF
                     DLRPYGLIQMLDLLHPIYKETAAYGHFGRENFPWEKTDKAQLLRDAAGLK"
     gene            15121..15420
                     /locus_tag="OQP62_001576"
     CDS             15121..15420
                     /locus_tag="OQP62_001576"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721160.1"
                     /translation="MTEDSTMSLKVTNTGSLSVNQYGWINIWTAILGHFFAQFPAFFE
                     GRRNVGQNQAVNVSDNADIMRIYALLFFCVLGIKRDARLIQKHTTFSSCRHFQPG"
     gene            complement(15417..15581)
                     /locus_tag="OQP62_001577"
     CDS             complement(15417..15581)
                     /locus_tag="OQP62_001577"
                     /inference="COORDINATES: protein motif:HMM:NF037550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721161.1"
                     /translation="MGITSAGMQSRDADCGRHARTRTMRQIQQNTTVHYLVSPPRPPR
                     KTNPQAKATF"
     gene            15715..15846
                     /gene="yqgB"
                     /locus_tag="OQP62_001578"
     CDS             15715..15846
                     /gene="yqgB"
                     /locus_tag="OQP62_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid stress response protein YqgB"
                     /protein_id="HCS1721162.1"
                     /translation="MKKKPVAQAEHQRYLLENPLVYGLLSRLRIAIVVNCFTLANKN"
     gene            15855..17831
                     /gene="speA"
                     /locus_tag="OQP62_001579"
     CDS             15855..17831
                     /gene="speA"
                     /locus_tag="OQP62_001579"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HCS1721163.1"
                     /translation="MSDDMSMGSPSSAGEQGVLRSMQEVAMSSQEASKMLRTYNIAWW
                     GNNYYDVNELGHISVCPDPDVPEARVDLAKLVKAREAQGQRLPALFCFPQILQHRLRS
                     INAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLA
                     HAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLEEAERLNVVPR
                     LGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLRDAGRLDSLQLLHFHLGSQ
                     MANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNE
                     YANNIIWAIGDACEEHGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTDPTAPAE
                     DAPRALQNLWETWQEMHKPGTRRSLREWLHDSQMDLHDIHIGYSSGAFSLQERAWAEQ
                     LYLSMCHEVQKQLDPQNRAHRPIIDELQERMADKMYVNFSLFQSMPDAWGIDQLFPVL
                     PLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGFFMVG
                     AYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELSDEGDTVADMLQYVQLDPKTLLTHF
                     RDQVKQTDLDDALQQQFLEEFEAGLYGYTYLEDE"
     gene            18059..18979
                     /gene="speB"
                     /locus_tag="OQP62_001580"
     CDS             18059..18979
                     /gene="speB"
                     /locus_tag="OQP62_001580"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HCS1721164.1"
                     /translation="MSTLGHQYDNSLVSNAFGFLRLPMNFQPYDSDADWVITGVPFDM
                     ATSGRAGGRHGPAAIRQVSTNLAWEHHRFPWNFDMRERLNVVDCGDLVYAFGDAREMS
                     EKLQAHAEKLLSAGKRMLSFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCE
                     FDHGTMFYTAPKEGLIDPHHSVQIGIRTEFDKDNGFTVLDACQVNDRGVDDILAQVKQ
                     IVGDMPVYLTFDIDCLDPAFAPGTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVA
                     PAYDQSEITALAAATLALEMLYIQAAKKGE"
     gene            complement(19080..19838)
                     /locus_tag="OQP62_001581"
     CDS             complement(19080..19838)
                     /locus_tag="OQP62_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HCS1721165.1"
                     /translation="MKIRALLLALGMATVLTGCQNMDSNGLLSSGAEAFQAYTLSDAQ
                     VKALSDQSCQELDSKAKIAPASSEYTKRLAKIAAALGDNINGQPVNYKVYETKDVNAF
                     AMANGCIRVYSGLMDMMTDNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRVAAASA
                     GGVVGSLSQSQLGDLGEKLVNSQFSQRQESEADDYSYDLLRKRGISPAGLATSFEKLA
                     KLEAGRQSSMFDDHPASAARAQHVRDRMSADGIK"
     gene            20114..22105
                     /gene="tkt"
                     /locus_tag="OQP62_001582"
     CDS             20114..22105
                     /gene="tkt"
                     /locus_tag="OQP62_001582"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HCS1721166.1"
                     /translation="MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDF
                     LNHNPTNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPMSELQNFRQLHSKTPGHPE
                     VGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHFTYVFMGDGCMME
                     GISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAKRFEAYGWHVIRGIDG
                     HDADAIKRATEEARAVTDKPSLLMCKTIIGFGSPNKQGTHDSHGAPLGDAEIALTREQ
                     LGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYEKAFPQEAAEFTRRMKGDMP
                     ADFNAKANEFIAKLQANPSKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSG
                     SKAINEDAAGNYIHYGVREFGMTAIANGIALHGGFLPYTSTFLMFVEYARNAVRMAAL
                     MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVE
                     RQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPQIIFIATGSEVELAVA
                     AYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAIEAGIADYWFKYVG
                     LNGAIVGMTTFGESAPAELLFEEFGFTVDNVIAKAKALL"
BASE COUNT         5112 a         5839 c         6096 g         5095 t
ORIGIN      
        1 cttaaagcta aaagctttcc ggaaccccca gcctagctgg gggttttcca tagacaacaa
       61 tggcgcagat cgtatctgcg cctttttatt ctgttttttc ctgcattttg ttatccatct
      121 ctaaaaaata ctctctgtcg gatatatatc gctggttaat cgtatggcgt cacattattc
      181 gtctgcaata tagggataat gcgaccagtt gacataactg gagatataac atggagtttt
      241 tcaggaaaac ggcattagct gctctggtaa tgggtttcag cggcgcagcg ttcgctttac
      301 cgaatatcac catcttagcg accggcggaa cgatcgctgg cggcggtgat tcagcaacaa
      361 aatcaaatta tacggcaggt aaagtcggcg tcgaaaatct ggtggatgcc gttcctcaat
      421 tgaaggacat tgcggtagtg aaaggcgagc aggtcgttaa cattggctcg caggatatga
      481 acgatgaagt ctggctcacg ctggcgaaaa aaatcaatac cgagtgcgac agcaccgacg
      541 gtttcgtgat cacccacggt actgatacga tggaagagac cgcttatttc ctcgatctga
      601 ccgtgaaatg caataaaccg gtggtactgg tcggcgcgat gcgtccttcc acgtcaatga
      661 gcgcagatgg cccgttcaac ctctataatg cggtagtaac agcggctgat aaacagtctg
      721 ccaaccgcgg cgtgctggtg gtaatgaatg ataccgtcat ggacggacgc gacgtcacta
      781 agaccaatac gactgacgtg gcgacgttta aagcggttaa ctacggcccg ctgggttata
      841 tccacaacgg taaaattgac taccagcgta cgccagagcg taaacatacc acctccaccc
      901 cgttcgacgt gtcgaagctg accgcgttgc cgaaagtcgg tatcgtttat aactatgcga
      961 atgcgtccga tctgccggca aaagcgctgg tagacgcggg ttatgacggg atcgtgagcg
     1021 caggcgtggg taacggcaac ctgtataaaa cggtctttga taccctagcg accgccgcgc
     1081 acaacggtac ggtagtggtg cgttcttcac gtgtgccgac tggcgcaacc acgcaggatg
     1141 cggaagttga cgatgcaaaa tacggctttg tcgcttccgg cacgctgaac ccgcaaaaag
     1201 cgcgtgtctt actgcaactg gcgttaaccc agactaaaga tccaaaacag atccagacga
     1261 tgttcaatca gtattaaaga taatgccccg gtcggaaggc cggggccatc tttggaagac
     1321 ctctcgcaca accaacacta ttatcttgct aattatcatc ctggttatga taattgtggg
     1381 cgtcatgtct ctggacggga ggtccacaag tggttcgaca atggattgct ggcgcagcgc
     1441 tgtttgccct gatttcaggc tatagttggg cagaggttgc tcaaccctcc gataacatct
     1501 taaaagaaca gtttagtaag cagtaccacg gcatacttaa actggattcc attaccttaa
     1561 aaaatcttga ttcgacgggc aatcaggcca cctggtctgc cgaaggggat atttcttccc
     1621 gtgaagatat gtataccggc gttggtatgg cggcggatta ttattttgtt gaaaaaacct
     1681 ggaccaaaga tcgtcccgtt aaattttctg ccatgttaac cagcaaaggg acgccagcct
     1741 ctggctggac ggtgagctat tactcattac aaatggcagc cagcgatcag ggccgggcta
     1801 ttgacgacat taaaacgaat gataaatacc tgatcgtcaa cagtgatgac tttaactatc
     1861 ggtttggcaa cattgaagcc tcctggcgtg cgcagaaagc gtcgatcccc ggtcttgaag
     1921 aacaactctc tgccctggat aagaaaatag cggtagctaa aaaagaagcg gacgcatatt
     1981 ggggaaaagg cgctgatggg aaaccgttga cccgcgccga ggcgtttaaa aagacgttaa
     2041 aagagcgcga tgattatgta aaagccaacg atagcagcgt atatgccgag aaatacgaaa
     2101 aagaggtcta tcaaccagca ttagacgcgt gtcgtaagca gagtgagccg tgcaatgaag
     2161 cggctattca gcagaaaaga gatttagaca tacacgagca acggcggcag gtatttttga
     2221 aatcagaaga gctgcgtcga aaagcgcaga atgactggat aacgttagag aaagggcaat
     2281 atccgctgaa tatagcggta cagaaacttc agatgcaaca gagtgatatc cgcatgaaaa
     2341 tcatggatat taatgacggt tacgagcgct ggaaaaaaga tacggacgat ttgcgtcgta
     2401 aaggcgttat taaataatgc gcttgctggt ggcgcattaa ccgccacagg tcggtaagcg
     2461 tcgcgccatc aggtatttta cccgctggcg cgacaggctt atccttgtta ttccgcgaga
     2521 aacaactcaa gaagagagtt taaaaacagt ttaccgtgac gggtaatctg ccagtattgc
     2581 tcgcattctg tcaggtagcc ctgggcaata gcctcgtcga ttggctgacg aataaccgct
     2641 tccgtaagcc cggtgtagtc gacaaattcg gcgcgaggcg cgcgctccag caaccgaaaa
     2701 cggttcataa agaactcaaa gggtttatcg tcatcactca cgtcacgctg gctttccagg
     2761 taacgtccct gcatataacc gcgtgggtga cgggttttgg tggtgcgcaa gatcctgccg
     2821 tccgggaagg tgactttacc gtgggcgccg cagccaatac ccagatagtc gccaaagcgc
     2881 cagtagttca gattatgctg gcactgataa ccgggtttgg cataggccga cgtttcgtat
     2941 tgctgatagc ccgcggcggt taataactgg tggccctgct caaagatatc ccacagcgcg
     3001 tcatcgtccg gtaaaaccgg cggacgcgaa ccgaacaaag tgttgggttc aatcgtcaat
     3061 tgataccatg agagatgcgg cggattaagc gcaatcgcct gtcgcaaatc attcagcgcc
     3121 tcttccagcg tttgatccgg caatccatgc atcaagtcga ggttaaagct gcgtagccca
     3181 agcccatttg ccagtcttgc tgcccgcatc gcctcttgtg gaccgtgaat acggccaaga
     3241 cgtttcagct taggctcact aaagctctgc acgccaatgg agatccggtt tacgccggcg
     3301 cgctgatagt cgatgaagcg gtcggcttcg accgtgccgg ggttcgcttc catggtaatt
     3361 tccgcatccg ccgccagatt caggcgcgca cgcacgccgt ccagcagcgt ttgcatcgcc
     3421 ggcccggaaa gcaggcttgg cgtaccgccg ccaataaaaa tggtctttac ttcacgccct
     3481 tgcgcccaag cgacgtcggc atccagatcg cttaacagat gctggacgta gtcgtcatgc
     3541 ggcacctcgc ccttcaacgc atgggaattg aagtcgcaat atggacattt ttgtacacac
     3601 cagggaatat gaatataaag actgagcggc ggtagtttag ccattgcgta acgcatccag
     3661 cagcagcttg agcgcttgtc cacggtggga aatcgcgctt ttttcttcac gggtcagttc
     3721 tgcggcggtt ttgccttcag acggtacgaa gaaaatggga tcatagccaa atccgccatt
     3781 tccggccgcc tggcgagtaa tgacgccagg ccagctaccg tgacagacta tcggtgtggg
     3841 atcttcggca tgacgcaaat aaaccagtac acaatggaat cgcgcctggc gtttgtcgtc
     3901 cggaacatct cgtagagtat gcagcagttt ttccagattt tgctgatctg tcgcgttttc
     3961 gccagaatag cgcgcggaat agatacccgg cgcgccgcct aaaacgtcaa cggccagacc
     4021 ggagtcatcg gcaatggcgg gcagaccggt cattttagcg gcatggcgcg ctttgagaat
     4081 cgcgttttca ataaacgtca ggccggtttc ttccgcagag tcaacgccca gtttcgtttg
     4141 cgctaccaca tcaagcccaa aatcgcttaa cagcgacgcg agctcgcgca ctttaccggc
     4201 gttgccggtt gcgagaacaa ctttttgcat ggaataccta ctcagttaac gccgcaattt
     4261 ccggcgggat ctgttgcggg tgaataattt ttacctgttt gtgacggccc agctcgcctt
     4321 tttcgatgac gatctgactt ttcgccacgc gaaactgttt accgagaaac ttggtcagat
     4381 ggctgtttgc ctgaccgtca accggcgggg cggtaatggc gactttcacc tcgtcgccat
     4441 gtaaacccac aatactgtcg cggctggctt tcggctgaat ataaagccgt aacaccagac
     4501 cgtcttcgca gcgagtcaca gcactcatag cgccatccac agccccggca gcaacatgtt
     4561 gcctgtcgct tgtaagactt cagcgatccc catattaacg acatacagca gcagcaccag
     4621 aaccatcggc gagaagtcga tgccgcccat cgcaggcagt atacggcgaa tcgggctgag
     4681 cagcggctcg gcaagctgaa tcaatacata ttcaatcggg ctacgaccct ggctcaccca
     4741 gctcatgata gccatgacca gcagcaccca gaagatcagc aggccgattg ttttaagtaa
     4801 gataagcacc gcggcaatcc agataatcgc ctgaaacgta attaccttaa acagcactat
     4861 cgccttaata acgctaagaa taaacgccac cagcagggaa gcgctgtcga tcggccccat
     4921 tggcgggata atacgacgca gcggtccgat gatgggctgc gtaattttca ccacgaactg
     4981 ggaaaaaggg ttgtaaaagt cacagcgggc ccactgcatc cacacgcgca ataatagcac
     5041 catggtatac agctcaatta ccgttgagag caggaaggtc aacgtattca tggcgttcct
     5101 cagttttcct taattttttg tgtaatcacg agcaccaaag atagcggtgc cgatgcgcac
     5161 cattgtgcta cctgccgcaa tcgcggcttc catatcgtcg ctcataccca gagataaggt
     5221 atcaacgtca gggtagcgcg ctttcagccc ggcaaatgct acagccattt gacgtgcgac
     5281 ttcaaactgc cttacataat ctgactctgg cgccgggatc gccatcagtc cgcgaagccg
     5341 cagacgcggc agtgtagcca ccgcagcggc cagctcatcc agttccgcca gcggaatgcc
     5401 tgatttgctg ttttcatcgc tgatattaat ttggatcaga acatttagcg ccggcagatt
     5461 atccgggcgc tgttcgctca gccgcgaggc gatacgcagg cgatcgatgg tatgacacca
     5521 gtcaaaatgc tcggccacca gccgactttt gttggactgt aaagggccaa taaagtgcca
     5581 gtgcaggcct tccactttcg cttcctgaaa gtggcggatt ttttccaccc cctcttgtac
     5641 ataattttca ccaaatgccc gttgtccggc ggcaatggct tctgcgatgt cgctcgcagg
     5701 tttggtttta ctcactgcaa gcaacgtaac ttcttctgaa gagcggccac aacgcgtcgc
     5761 cgcggcggag attttgtccc ggatgtgtgc caggttatgc gcgatatcgt tcattttccg
     5821 aggatgttta tatgaatatg gaagaaattg tgacgcttag tgtaaagcat aacgtctcgg
     5881 atctacacct gtgtaacgcc tggcctgcgc gatggcgcaa acaaggacgc atggagaccg
     5941 cgccttttac cgcgcctgat gtcgacaggc ttctgcttga ttggcttaat gacgcgcaac
     6001 aatatcagtg gcgaacgcac ggtcagcttg atttcgccgt ctcgctgtct ggcacgcggc
     6061 gcctgcgcgc cagtgcgttc acacatcaac agggaacgtc gctggcgata cggctattgc
     6121 ccgagcgttg tcctgatctg gcggaaatcc agacgccgcc gatagtaccc gcactgcttg
     6181 ccagcgagaa cggactgatt ctggtcactg gcgctactgg ctgcgggaaa tccactacgc
     6241 tggcggcgat ggtgggacat cttaatcaac atgccgataa acacatcctg acgctggaag
     6301 atcctattga gtaccgttac accagcaagc gttgcctgat acagcagcgg gaaatcggcc
     6361 agcattgcgc cacttttgcc gccgggctgc gcgcggcgtt acgtgaagat cccgatgtca
     6421 ttttactggg agagctgcgt gacagcgaga ccattcgcct ggcgctgacg gcggcggaaa
     6481 cggggcatct ggtactggca accctgcata ctcgcggcgc ggcgcaggcg gtggaaagat
     6541 tagtggatag ttttccggcg caggaaaaag aaccggtacg cagtcaactg gcgggtagtc
     6601 tgcgcgccgt actatcgcaa aaactggagg tcgacagaca ggatgggcgc gtggcgttgt
     6661 ttgaattact gattaatacg ccagccacag ggaatttgat ccgtgaaggc aaactccatc
     6721 agttggccca cgtgatacaa accgggcagc agcaggggat gatgacattc gcccagagcg
     6781 cgcaatggcg tcaggcgcag ggacggctgt agcgaagatg gcggcgtagg gaaggggaag
     6841 tgttgactgg cgcggtggat tgaacggcat acaggcttgt atcctggcga accggcgtta
     6901 aaatcgcagc tttgttaaaa ccacagcgaa gtcatttaac gatgtcatca caaccgaatc
     6961 aaagcctgat agatggcatt cgctgtctgc aatatctggt ctccagcgac cgtgctatcg
     7021 gatgtcgcga gcttgcccgg ctgatggata ttaataccac gcgcgttaat cgcctgttaa
     7081 tgacgatggc ctctattgga ctcacgatgc aggatgagca ccgacgctat ttacccgggc
     7141 caggcattca tgctttggcg gcgcaggcga ttcgcggttc agcgctgttc tcccatgcgt
     7201 tgcctatcct tgagcgacat gcgcccagag acatcgtggt ggcattaggc gtgctatggg
     7261 aagaccagat tatctatatt tatcactcta cgccgggggc gcagggaagt caggcgctgg
     7321 cggggtttcg catgtgcctg gcctggcagt cggtacctgg ggtggcgtta ctggcggcag
     7381 aaagcgatga ggcgctaatg cagcgtttta gtccggagca gtggcgtaat ctggcaccgc
     7441 atgtggcgca gcagcgccag cggggatacg tgctgtggca tcacgctgat ggtgaagttt
     7501 ctatggcgca accgctagac aagcacgccg cagcgctggc ctttgcggga atgtggcgga
     7561 ttgatgaggc ggaggcggct gcgcgtttac aggcgttgaa ggcattaaac cagcttattg
     7621 cccagtaagc ctggcaaccg tgaccgcgtt atccgcctgc tgacaaaaac ggctttaata
     7681 cccctgttca aaatagcttt cgaggataat cacggcggag gccgagtcca ctttgccttt
     7741 attcagcgcg cgatacccac ctcgttcaaa cagaccggag cgtgcttcaa cggtgctgag
     7801 tcgttcatcg tgtagcgtga cagttacccc gaagcgccca tgaatacggt tggcgaattt
     7861 acgggcgcgc gccgtcagcg gttgttcagt gccatccata ttgagcggta gcccgacaat
     7921 aatttcgtcc ggctgccact ctttcagcaa acgttcaatg agcgtccagt cgggcgtgcc
     7981 gtcctgtgct ttgattgccg gaagcggacg ggcggtgccg gtaatgcgtt gtcctattgc
     8041 aacgccgatg ctttttgtgc cgaagtcaaa ggccagtaag gtgtcgctca tcaggcgtgc
     8101 cccgcaacgc caggcatggt cagaatatca atgccaataa gttttgccgc ttcgcgccag
     8161 cgctcggcaa tgggcgtttt gaacaaaata ttgagatcgg cgggcgcggt aagccaggcg
     8221 ttatcaagca actcttgttc aagctggcct ttatcccagg aggcgtagcc cagcgcgacc
     8281 agcacatcgg aaggctgttg ttgggtacct aacgtttcca gcacatcgcg ggaggtggta
     8341 atcacggtat tgtctgagat acgaatgctg gaggcgaaac gtgacggcgg agtatggaga
     8401 ataaatccgc gatcttccgc cagcgggccg ccgagcatca cggctttatc aagacgaatt
     8461 gccgaatcgc gcggttccgg cgtaattttt agtttttcca gaatcccttc aatttgcaga
     8521 ttttccaaag gcttattaat aataatcccc atagcgccgt cctggttgtg ctcgcaaata
     8581 tacaccacgg aacggcggaa aatcgggtcc tggagcgcag gcatggcaat aagaaagtga
     8641 tgctgtaaat tcattgtcag aggttctgtt tcctggttca aaaaaacgac agcgttcagt
     8701 atgtggggaa agcggacggt tgtcactcat ataagccgtc ttttgccaaa ggacggcggc
     8761 cttatcgggc aatagactgc cggatggcga tgctgacgcg ccgccttatc cgaccggggc
     8821 ggcgtgattg ctcaggcccg gtaagcgcac gccaccgggc aataaacttt tacttcgcca
     8881 gacgcgcttc gatggcgtcc atcaacatcc cggtgataga gatcgggtat tccgcttcaa
     8941 tttcacgcac gcaggttggg ctggtcacgt taatttccgt taagcggtcg ccgataatat
     9001 ccagaccgac aaaaataagc cctttggctt taagcgttgg tccaacgcgg cgggcgattt
     9061 cccagtcgct ttcgctcaac ggacggggtt cgccgcgacc accagccgct aggttgccgc
     9121 gggtttcgcc gccctgcgga atacgcgcca ggcagtaagg caccggctcg ccgtcgacga
     9181 ccagtacgcg cttatcgcca tctttgatcg cgggcagata gttctgcgcc atgcagtagc
     9241 ggttgcctag ctcggtcagc gtttcggcga taacgcctat gttaggatcg ccttccttaa
     9301 cgcggaaaat ggacgcgccg cccataccgt ccagcggttt cataatgata tcgccgtgct
     9361 tttcccaaaa cgctttgagc tgcgctttat tgcgcgttac cagcgtttcc ggcgtcaggt
     9421 cggcaaacca ggcagtatac agtttttcat tacagtcgcg caggctttgc ggtttgttga
     9481 cgataagcgt cccttcctct tcagcgcgtt ccagaatata ggttgcataa ataaactcgg
     9541 tatcaaacgg cggatctttg cgcatcaaaa tgacgtccag atcggcgagt ttaatctcct
     9601 gctcgctgcc gaactcgtac catttatcgt aattttgctc cacgctcaac gttcgcgtgc
     9661 aggcgcgggc ttcgccgtta atcagataaa ggtcggccat ctccatataa tgaagttcat
     9721 aaccacgacg ttgggcttcc agcagcatag cgaaactggt gtctttcttg atgttgatgt
     9781 gtgcgatggg gtccatcacg atgccgagct tgatcattat tttctccgtt aacgcttcat
     9841 cctaagtcgc caaaacgcac ctgtagcgcg gtaatggcgg tgagcgcggt tgtctcagta
     9901 cgcagaacgc gaggtcctaa cagaatatca gtaaactgat agcgcgcggt catcgcgatt
     9961 tcgtccgccg acagcccgcc ttccgggccg atcagcagtc ggacgcgttc aaccggcagc
    10021 ggcagagtgt tgatgctggc atgggcgcgc ggatgaagat tgagcctcag cccggaatct
    10081 tgctcggcgc accaggcttc cagcgccatc ggcgggcgaa tttccggcac ccggttacgc
    10141 ccgcattgtt cgcaggcggc gatggcgatc ttttgccact gctggcgctt tttgttcaga
    10201 cgttcattat ccagtttaac gccacagcgc tcagagaaca gtggcgtaat gaggcttaca
    10261 cctagttcga tcgatttctg gatagtaaat tccatttttt caccgcgcga catcacctgg
    10321 cccagatgga tatgtagcgg cgattcacga tcgtcgattt cgcctttcat cacttgcact
    10381 tcaacgcttt tcttactggc gctaatgatt tcagcatcga atacctgatt gctgccgtca
    10441 aacagctgta acgcttgtcc cgctcccatg cgcagtacac gaccaatatg gttggccgca
    10501 tcttcgcata acgaaatctg cgtaccggac gtcaacaatt cagggtgata aatgcgggga
    10561 atacgcataa taaaaaaatc cgcgtcatgg ccccggcgtt tggctatcca gggcatgggt
    10621 taacaagaat cccgctagtg taggttagct ctttcgcgcc tggcaagcgc gttgcacata
    10681 gggattatga ttaccctgga ccttcgcgat acgcgcatcg cgctcgcact cccaggcggt
    10741 aacggggtac tgcttatccc agacgttaaa aagctgcgtt tgttggcggg aaagtttcag
    10801 ttggtattgg tcgcgcatat aaaaataagt gcgggcgatt gcgccacggg cgcgggcggg
    10861 cggctcggcg agcttcgctt taaaatccac tttcatggcg cactgcccgt actgaccttc
    10921 gccgccgttc cactggctat acataaagtt gccgcgatcg ccattcactt cgccaatcgc
    10981 gggttgcagg ttatgcatat cgctttccat tttgcagtag accgggtctt tagcgcagtt
    11041 ttttcgcccg ccgtcctgcc agcactggcg ctgatgaccg aattgccagg cggggacaac
    11101 gtgctcccac tcaatgcgtc tggcgcgatt ctcgttttta cgcaccttat agccgcagga
    11161 ctccaggtct acgacgcctt ttttaccctg ccagcggatt tggcacccgc agtaaaagct
    11221 gccgggcgcg tcggcattga ctttgacgct cgccgctttg gcctgagaaa aattgttaat
    11281 gccgtcggcc aatgcctggc ctgaaaacgc tgcggccagc aacgcagcag caaaagaaaa
    11341 attacggtac attgcacact ccatagcaaa acgagcccgc aacgtagcga aagttgtgtc
    11401 tgtatgcaat cagtccgctc aggaaagttc ccggacgttt cggggaacta cccggcgacc
    11461 agtggttcgc cgcagtgaac gcaacgataa accgcttcgc cgcgtaccac acggttatga
    11521 cggcggacgg tgagttgatg ttgctggcat tggcaatggt agggaaaggt attgcgccgt
    11581 acggattgca gcgcaaattg atgagtacgt ctggccggaa cgcccagcac gctttccatc
    11641 atccacttcc attccttgcc atgcggagcc ttgcgtccga agtgcttcca caccaacaga
    11701 tgcgccagtt catgcggcac gacctctgca ataaaggtgt cgatgttttc cagcagtaac
    11761 accgggttga ggcggatttc gtagctctcc agccaggcgg tgcccgccga ggtgccgcgt
    11821 tgcgtataca ccagtttcgg ctccggataa tgtctatcga gcttgaggtt cgcctgggcg
    11881 agattttccc gcagacggcg catcacggcc tgctggatag cgatagggag acgaggggtt
    11941 ttcatagcgg cagagaatag tgcgacggaa gagggactgc aagaaaaacg cttcctcctg
    12001 tggcaggagg aagcgtggag ggattagtcg tgggcgccga tttcgcgcag tttacgacct
    12061 ttcatcaggt tacgttcaat gtgttccagc gaaacgtgtt tggtttccgg caccagccac
    12121 agggtcagca ggataaacag cacgttcagg ccagcgtaga cccagaaggt gttggcgtta
    12181 cccagattgt tcagcatggt caggaacgtt gcgccgacga tcatattggc gatccagttg
    12241 gtcgcggtgg agcaggtgat gccgaaatcg cggcctttga gcggctggat ttcggagcac
    12301 agtacccaaa tcagcggacc agcgctcatc gcaaatccaa tgatgaacat cagcagcata
    12361 gcgatagcga agtattgcgc agacggtgaa tggatgccga tgtgcatcat cgtacccaga
    12421 atccccatac caatcgccat gaccaggaag cccagcgtca gggtcggctt gcggccccag
    12481 cggtcaacca ggccgatagc gatgaaggtt gccagcacgt tagtcagacc aacaataacg
    12541 gtgccccaca tctgctccgt ggtattcgtg taccccgcca gttcgaagat tttcggcgcg
    12601 taatacatga tgacgttcat cccggtaaat tgctgcatta cctgcaacaa aatgccaaga
    12661 aacacggcgc ggcggaagtt gctgttctct ttgaacagcg cccaaccgct ctgtttaacc
    12721 tgcaaacttt cgcgaatttc atcgagctca cgttttgctt ccgcactggt gtcacgcagg
    12781 cgcaacagga cgcgttcagc atcatggaaa cggcgtttcg ccgcaaacca gcgcgggctg
    12841 tccggcagga agaagacgcc gatcagcagc agaatggccg ggatgatgat cacgccgagc
    12901 atccagcgcc atgcgccgct gtagctgaac gcggtatcgg acagataagc gcccagaatc
    12961 ccgatggtga tcatgagttg gtacattgag atcatactgc cgcgaatttt ttccggcgcg
    13021 atctcggaca ggtacaacgg tgcagtgtag gaagcgacgc cgacggccag acccagcagc
    13081 acgcgagaaa taatcaggac ttcaacgtta ggcgccgcag cggagaacag cgaaccggcg
    13141 acgaacagga tagcgccgat catcaggctt tttttacgac ccagcttaaa ggagagccag
    13201 ccgctgccga cagcgccgac ggccgcgcca aacatcatgg agctgaccac ccattcctga
    13261 gtgtgtgcgg taatctgaaa ctcgtcggta atgaagggta aagcaccggc gataacgccg
    13321 atatccaggc caaaaagtaa tcctgccagg gctgcaagaa agcagacaaa aaatgtcatg
    13381 gccttgttgg aacgcccttg ttttttattg tcaggcatta tgccctccgg ttgggttagc
    13441 aattttatcg atgttaagag taggtgagta cgccgtaaaa agatgtgagg ctaatcacaa
    13501 tggtgtaatc gtttacacta ctatttatct cggtgattat ttaattatct gaaaaataat
    13561 agttttaata atcttataac cctatcaatc gcctggtatt cagacaaagc tgaaaaacta
    13621 tgtaacattt tcatcgcaga gttagcatac cgacagtgag gtggtcagtt ctcaatgaaa
    13681 atgaatgtaa ccgctttcat agctgctgaa actgaatgat gaaaagtgta gtcgaagaaa
    13741 cgaaagagga gagcggattg tgctgcgcat cacaaaaagg tcagtataaa tacacgctgg
    13801 aacatctaat aacgttgcgt gtatcagcaa tgataaaggc cagcagggcg ctggccttga
    13861 taagtacggt atggtttacc tgactgaaaa acagcgtcag gcgcgggcga ttatttcaga
    13921 ccggcagcat cgcgcagcag ttgcgctttg tcggtttttt cccatgggaa gttttcgcga
    13981 ccgaagtggc cgtaagccgc agtttctttg tagatcgggt gcagcagatc cagcatctga
    14041 atcaagccgt acgggcgcag gtcgaagaat tcgcgcacca gcagaatcaa ctgttcagca
    14101 ggcacttttt cagtaccgaa cgtttccacc atgatggacg tcggctccgc tacgccgata
    14161 gcgtaggaga cctggatttc acagcgatcc gccagacctg ccgccacgat gtttttcgcg
    14221 acataacgcg cagcgtaagc tgcagaacgg tcaactttag acggatcttt accggagaag
    14281 gcgccgccgc cgtgacgcgc cataccgccg taggtatcaa cgatgatctt acgaccggtc
    14341 agaccacaat cgcccatcgg gccgccgata acaaaacgcc cggttgggtt gataaaaaac
    14401 ttagtggacg tatttaacca ttcagacggc agaatgggtt tgatgatctc ttccatcacc
    14461 gcttcttgca gcgatttttg gtcgatatct tctgcgtgct gcgtagagag aaccacggcg
    14521 tcgataccga cgattttgcc gtcgtcatac tggaaagtga cctggctttt tgcatccgga
    14581 cgcaaccatg gcagggtgcc atttttacgc acttcagcct gacgctgtac cagacggtgc
    14641 gcgtaggtga ttggcgcagg catcagtacg tcggtttcat ttgtcgcgta gccaaacatc
    14701 aggccctggt cgcccgcgcc ttgttccagc gggtctgcgc ggtcaacgcc ctggttgata
    14761 tccggagact gtttgccaat tgcgctcagt accgcgcaag agttggcgtc aaagcccatg
    14821 tcggaatgca catagccaat ttcgcgcacc gtattacggg taatctcttc gatatcgacc
    14881 caggcgctgg tggtgatctc accgccaact aaaaccatgc cggttttaac gtaggtttca
    14941 caggcgacgc gtgctttcgg atcctgttgc aggatagcgt ccaacacggc atcagagatt
    15001 tggtctgcga ttttgtcagg atgcccttct gatacggact cagacgtaaa aaggtgtttt
    15061 gccatattta atttcaccta aggagaattt agttagctca aactgttgtg cggaatagtc
    15121 atgacagaag attctaccat gagtctgaag gttactaaca ctggcagtct gagtgttaat
    15181 cagtatggat ggattaacat ctggacggct attttaggtc acttcttcgc ccaatttcca
    15241 gctttttttg aaggccgtcg caatgtcggt caaaatcagg cggtaaacgt ttctgataat
    15301 gctgacatta tgcgcattta tgctttgctt tttttctgcg ttctgggtat aaaacgcgac
    15361 gcgcggctca tacaaaagca cacgacgttt tcttcgtgtc gccacttcca gccgggttaa
    15421 aacgttgctt tggcttgtgg gttcgtctta cgaggcggcc gtggaggtga tacgagataa
    15481 tgaaccgttg tattctgctg aatctgtcgc atcgttctgg tgcgcgcatg tctcccgcaa
    15541 tctgcatctc tgctttgcat acctgccgat gttataccca tctcggcgct tctcaggatt
    15601 ccagagccgg caatggcgct gaagactgaa caagggcgct cttgttaacg caagagtttt
    15661 ctcgtggttt cgccgaaccg ttatctgtga gttcggttac gtgtttacaa tgatatgaaa
    15721 aagaaaccgg tcgcgcaggc ggagcatcag cgctatctgc tggaaaatcc gcttgtctat
    15781 gggttgttat cgcgtcttcg gattgcgata gtagtcaact gttttacact tgctaataaa
    15841 aattgaggtt cgctatgtct gacgacatgt ctatgggttc gccttcgtca gcaggcgaac
    15901 agggtgtact acgctccatg caggaggttg caatgagctc ccaggaagcc agcaagatgc
    15961 tgcgcactta caatattgcc tggtggggca ataactacta cgacgtcaac gagctgggcc
    16021 atattagcgt atgccccgat cccgacgtac cggaagcgcg tgtcgatctt gccaaactgg
    16081 tgaaagcgcg cgaagcgcaa ggtcagcgtc tgccggcgct gttctgcttc ccgcagatcc
    16141 tgcaacaccg tttgcgttca attaacgcgg cgtttaagcg tgcgcgtgaa tcttacggtt
    16201 ataacggcga ctacttcctc gtttatccga ttaaggtcaa tcagcatcgc cgcgtgatcg
    16261 agtcccttat ccattccggt gaaccgttgg ggctggaagc ggggtcgaaa gcggaattga
    16321 tggcggtgct ggcgcatgcc ggcatgaccc gtagcgtgat cgtctgtaat ggttataaag
    16381 accgtgaata tattcggctg gcgctgattg gcgagaagat gggccataag gtttatctgg
    16441 tcatcgaaaa gatgtctgaa atcgcgattg tgctggaaga ggccgagcgc ctgaacgtgg
    16501 ttcctcgcct gggcgtgcgt gcgcgtctgg cctctcaggg gtccggtaag tggcaatcct
    16561 ccggcggcga aaaatcaaaa ttcggcctgg cggcgacgca ggtgctgcaa ctggtggaga
    16621 ccctgcgtga cgctgggcgt ctggacagtc tgcaactgtt gcacttccac ctgggatcgc
    16681 agatggcgaa cattcgcgat atcgcgaccg gcgtgcgcga gtccgcgcgt ttctatgttg
    16741 agctgcataa gctgggcgtt aatatccagt gcttcgacgt gggcggcggt ctgggcgtgg
    16801 attatgaagg tacccgctcg cagtccgact gttcggtgaa ctatggcctg aacgaatatg
    16861 ccaataacat catctgggcg attggcgatg cctgcgaaga gcatggttta ccgcatccga
    16921 cggtgattac cgagtctggg cgcgccgtca ctgcgcacca tacggtactg gtctctaaca
    16981 ttatcggcgt ggagcgtaac gaatacacgg atccgaccgc ccctgctgaa gatgcgccgc
    17041 gcgcgctgca aaatctgtgg gaaacctggc aggagatgca taagcctggc acccgccgct
    17101 cgctgcgtga atggctgcat gatagccaaa tggatctgca cgatattcat atcggctact
    17161 cttccggcgc gtttagtttg caggagcgcg cctgggcgga gcaactttat ctcagcatgt
    17221 gccatgaagt gcagaagcaa ctggacccgc aaaaccgtgc gcatcgcccg attatcgacg
    17281 aactgcaaga gcggatggcg gacaaaatgt acgtcaactt ctcgctgttc cagtcgatgc
    17341 cggacgcgtg gggaatcgat cagctctttc cggtgctgcc gctggaaggg ttagatcagg
    17401 taccggaacg tcgtgccgtg ctgctggata ttacctgtga ttccgatggc gctatcgacc
    17461 actatatcga tggcgacggt atcgccacga cgatgccgat gccggaatac gatccagaga
    17521 atccgccgat gctcggcttc tttatggtcg gcgcctatca ggagatcctc ggtaacatgc
    17581 acaacctgtt tggcgatact gaagcggttg acgtgtttgt cttcccggat ggtagtgtcg
    17641 aggttgagtt gtcggacgaa ggcgataccg ttgcggatat gctgcaatat gtgcaactgg
    17701 atccgaaaac gctattaacg catttccgcg accaggtaaa acagacggat ctggacgatg
    17761 cgttgcagca gcagttcctt gaggaatttg aagcgggact gtacggttat acttatcttg
    17821 aagatgagta gccgttgatg cccggcggcg ctgcgcttac cgggcctacg aatgcaggct
    17881 ggataaggta aagccgccac ccggcagaat gctatactca cttgaacccg tatgaattaa
    17941 cggcgataat tcgctgcaat agcgatttac aaatcaatcc cttcctcgtc gggtttaacg
    18001 acgcggaggg gatttttttc atctgtttta atgcaacgac tctaaaagag gtcaggacat
    18061 gagcacttta ggtcatcagt acgataactc actggtttct aatgcgtttg gttttttacg
    18121 tctgccaatg aacttccagc cgtatgacag cgatgccgac tgggtgatca ctggcgtacc
    18181 gtttgatatg gcaacgtccg gtcgcgctgg cggccgtcat ggcccggcgg cgatccgtca
    18241 ggtgtcgacc aacctcgcct gggaacatca ccgtttcccg tggaattttg acatgcgcga
    18301 gcgcctgaac gtcgtggact gcggcgatct ggtgtatgcg tttggcgatg cccgtgaaat
    18361 gagcgaaaaa ttacaggcgc acgctgaaaa actgctgtct gcaggcaagc gtatgctctc
    18421 tttcggcggc gaccacttcg tcacgctgcc gctgctgcgc gcccacgcga aacattttgg
    18481 caaaatggcg ctggtacatt ttgacgcgca taccgatacc tacgctaacg gctgcgaatt
    18541 cgatcacggc acgatgttct acaccgcgcc gaaagaaggc ctgatcgatc cgcatcattc
    18601 ggtacagatc ggtattcgca ctgagtttga caaagacaat ggctttaccg tgctggatgc
    18661 ctgccaggtc aacgatcgcg gcgtggatga tattctcgct caggtgaaac agatcgtcgg
    18721 cgatatgccg gtctatctga cctttgatat cgactgtctg gacccggcgt ttgcgcctgg
    18781 caccggtacg ccggtgatcg gtggtttgac ctccgatcgc gccattaagc tggtacgtgg
    18841 tctgaaagat ctgaacattg tcggtatgga tgtagtggaa gtcgcgccgg cttacgatca
    18901 gtcggagatc accgctctgg cggccgcgac gctggcatta gaaatgctct atatccaggc
    18961 ggcgaagaag ggcgagtaag ttgttttgcc ggatggcact gcgcttatcc ggcctacgct
    19021 taccgggcct gtgtaggccg gataaggcgt tcacgccgcc atccggcact gttcggggat
    19081 tatttgatcc cgtccgcgct catacgatcg cgcacatgct gtgcgcgtgc ggcggacgcc
    19141 gggtgatcgt cgaacattga gctttgacga cccgcttcca gttttgccag tttctcaaag
    19201 ctggtggcga gtcctgccgg actgataccg cgtttgcgca acagatcgta agaataatca
    19261 tccgcttcgg actcctgacg ctgagagaac tgcgagttca ccagtttttc gccaagatcg
    19321 ccaagctgtg attgcgacag gctgccgaca acgcctcctg ccgatgccgc cgcaacgcgc
    19381 acggcgttag tgcccagcgc gacctgcatc cctttcttta catgacccag agcgacatgg
    19441 cccatttcat gaccgatcac ggcttcaact tcgttgtcgg tcatcatatc catcagtccg
    19501 ctgtagacgc ggatacaacc gttcgccatg gcaaacgcgt tgacgtcttt cgtctcgtaa
    19561 actttatagt tcaccggctg gccgttaatg ttatccccca gcgcggcggc aatttttgcc
    19621 agtcgtttag tgtattcgct gctcgccggc gcgattttcg ctttgctgtc gagctcttga
    19681 caggattgat cgctcaacgc ttttacctgc gcatcgctta acgtataggc ctgaaaagct
    19741 tcagcgcccg aagaaagcag tccattagag tccatattct ggcaaccggt cagcaccgtc
    19801 gccatgccca aagcaagcag taaagcgcga attttcattt ttctcttcca tacgaattaa
    19861 tattattttg aaatgcgccc gttgcagatg aattagcgcc tgggttaagt ataaagaaaa
    19921 gcgtggcagg caagttagct aattgcgcaa catgcgagca cgatccggag atttctgaag
    19981 cggtaaaagg atgttccatg tacatgacgc gcggcttggg gtaaattgtt ggcaaatttt
    20041 ccggcgtagc ccaaaacgcg ctgtcgtcaa gtcgttacgg gcatggcctt tcaacatccg
    20101 atctggagtc aaaatgtcct cacgtaaaga gcttgccaat gctattcgtg cgctgagcat
    20161 ggacgcagta cagaaagcca aatccggtca cccgggtgcc ccgatgggta tggctgacat
    20221 tgccgaagtc ctgtggcgtg atttcctgaa ccacaacccg accaacccgt cttgggccga
    20281 ccgcgaccgc ttcgtgctgt ccaatggcca cggctcaatg ctgatttaca gcctgctgca
    20341 cctcaccggt tatgacctgc cgatgtccga actgcagaat ttccgtcagc tacattcaaa
    20401 aacccctggt cacccggaag tgggctacac cgctggcgtt gaaaccacta ccggcccgct
    20461 ggggcagggt attgccaacg ccgtcgggat ggcgattgcc gagaaaactc tggcggcgca
    20521 gtttaaccgt cctggccacg acatcgttga ccacttcacc tacgtcttta tgggcgacgg
    20581 ctgcatgatg gaaggcattt ctcacgaagt gtgctctctg gctggtactc tgaaactggg
    20641 caaactgatc gcgttctatg atgacaacgg tatctctatc gatggtcatg ttgaaggctg
    20701 gttcaccgat gacaccgcga aacgttttga agcctacggc tggcacgtta tccgtggcat
    20761 tgacggtcac gatgccgacg ccattaaacg tgccacggaa gaagctcgcg ccgtgactga
    20821 caaaccgtcc ctgctgatgt gcaaaaccat catcggcttc ggttcgccga acaaacaggg
    20881 tacccacgat tcccacggcg cgccgctggg cgacgcggaa atcgcgctga cccgcgaaca
    20941 gttgggctgg aaatacgcgc cgttcgaaat cccgtctgaa atctacgccc agtgggatgc
    21001 gaaagaagcc ggccaggcga aagagtctgc atggaatgag aaattcgcgg cttatgagaa
    21061 agccttcccg caggaagctg ctgaattcac tcgtcgtatg aaaggcgaca tgccggctga
    21121 cttcaatgcg aaagcgaatg agttcatcgc taaactgcag gcgaatccat ccaaaatcgc
    21181 cagccgtaaa gcgtcccaga atgccatcga agccttcggt ccgctgttgc cggaattcct
    21241 cggcggctcc gctgacctgg caccgtctaa cctgaccctg tggtccggtt cgaaagcgat
    21301 taacgaagat gccgcaggta actacattca ttacggtgtg cgcgaattcg gtatgaccgc
    21361 tatcgccaac ggtatcgccc tgcacggcgg tttcctgccg tacacctcca ccttcctgat
    21421 gttcgtcgaa tatgcccgta acgcagtgcg tatggcagcg ttgatgaaac agcgtcaggt
    21481 gatggtctat acccacgact ccatcggtct gggcgaagat ggcccgacgc accagccggt
    21541 cgagcaggtg gcaagcctgc gcgtaacgcc gaacatgtcc acatggcgtc cgtgcgacca
    21601 ggtggaatcc gcggtggcgt ggaaatatgg cgtagagcgt caggatggcc caaccgcgct
    21661 gattctgtcc cgtcagaacc tggcgcagca ggagcgtact gaagagcaac tggcgaatat
    21721 cgcccgcggt ggttacgtac tgaaagattg tgcgggccag ccgcagatta tcttcattgc
    21781 gaccggttct gaggttgagc tggcggttgc cgcctacgaa aaactgactg ccgaaggcgt
    21841 gaaggcgcgc gtggtttcca tgccgtccac cgacgcgttc gacaagcagg atgcggccta
    21901 ccgtgaatcc gtgctgccga aagcggtctc tgcgcgtgtg gcgattgaag cgggtatcgc
    21961 tgactactgg ttcaaatacg tcggcctgaa cggcgctatt gtcgggatga ccaccttcgg
    22021 tgaatccgcc ccggcagagc tgctgtttga agagtttggc ttcacggtgg acaacgtgat
    22081 cgccaaagcg aaagcgctgc tgtaatcctt aatacggcat aaaacgggtc gcttcggcga
    22141 cc
//
LOCUS       DAJVSD010000050        22026 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.050, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000050 DAJVSD010000000
VERSION     DAJVSD010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 22026)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22026)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22026
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.050"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            84..482
                     /locus_tag="OQP62_001583"
                     /pseudo
     CDS             84..482
                     /locus_tag="OQP62_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459103.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
     gene            complement(558..1763)
                     /locus_tag="OQP62_001584"
     CDS             complement(558..1763)
                     /locus_tag="OQP62_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001669153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1721167.1"
                     /translation="MLILKAYKFRLEPTPEQSQRLRQLCGCARFVWNLGLAETKRILG
                     SGEKLPSAFELNRMLTVWKKMPGHIFLQDAYTDNLQQKLKDLHTAWKRCFDKKLAAKA
                     PVWKRKNEGRDSIRFVNFEKYCRLENRRVKLPSGLGWVKFRQSQRVNGKIKNATISQL
                     AGQWYISFQVEVETAEPNHTSTTIVGLDAGVTKLATLSDGTVYQPVNSFKASQRKLAT
                     LQRQLSRKVRFSSNWQKQKRKVQHLHSHIANIRRDYLHKVTSEISKNHAMIVIEDLKV
                     SNMSKSAKGTAEQHGRNVKAKSGLNRSILDQGWYEMRRQLEYKQLWRGGQVLAVPPAY
                     TSQRCACCGHTAKENRLSQSKFVCQACGYTANADVNGARNILAAGHAVLACGGMVQSG
                     RPSETGTRR"
     gene            1786..2226
                     /gene="tnpA"
                     /locus_tag="OQP62_001585"
     CDS             1786..2226
                     /gene="tnpA"
                     /locus_tag="OQP62_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000458342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605-like element ISSen6 family
                     transposase"
                     /protein_id="HCS1721168.1"
                     /translation="MFATLLFLRSTSIQKHKINRSRHAAFLLHVHLVFITKYRRKILG
                     ESHYAAFHQYAAEVCRDFGGELKESNGDVDHVHMLIEYPPTVQLSVLVNSLKAVTSRR
                     LRNEFIDLRGAYGKAVLWSRSYFAGSCGGAPLEVVKQYIQHQRG"
     gene            2292..2522
                     /locus_tag="OQP62_001586"
     CDS             2292..2522
                     /locus_tag="OQP62_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000423444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721169.1"
                     /translation="MELRWCTALLVSDPLHMLRLKTIAQDNGIDSRSSPTRATRYKSW
                     WAQTRFLLRETFYYSGYRLLRYMPVQNNSITP"
     gene            2566..4917
                     /gene="polB"
                     /locus_tag="OQP62_001587"
     CDS             2566..4917
                     /gene="polB"
                     /locus_tag="OQP62_001587"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II"
                     /protein_id="HCS1721170.1"
                     /translation="MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQATLAPQESVAF
                     IPTSQTSRAASLLQAEKDYRLTPLQLRDFHRQPVSGLYCRTHRQLMRMEKLLRENGVT
                     VYEADVRPPERYLMERFITSPVWVDGEMRNGVIRNARLKPHPDYRPPLKWVSLDIETT
                     RHGELYCIGLEGCGQRTVYMLGPANGDERQLDFELVYVASRPQLLEKLNAWFAEHDPD
                     VIIGWNVVQFDLRMLQKYAERYRIPLRLGRDNSELEWREHGFKNGVFFAQARGRVIID
                     GIDALKSAFWNFSSFSLEAVSQELLGEGKSIDNPWDRMDEIDRRFAQDKPALATYNLK
                     DCELVTRIFHKTEIMPFLLERATINGLPVDRHGGSVAAFGHLYFPRMHRAGYIAPNLG
                     EVPPLASPGGYVMDSQPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHS
                     TEGFLDAWFSREKHCLPEIVSQIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTAC
                     RFFDPRLASSITMRGHAIMRQTKALIEAQGYDVIYGDTDSTFVWLRRAHSEADAAEIG
                     HRLVRHVNEWWAQTLQQQNLTSALELEFETHFCRFLMPTIRGADTGSKKRYAGLIQEG
                     DSQRMVFKGLETVRTDWTPLAQRFQQELYLRVFRNEPYQDYVRETIDKLMAGELDAQL
                     VYRKRLRRPLHEYQRNVPSHVRAARLADEQNLKQGRPAQYQNRGAIKYVWTVNGPEPV
                     DYQQSPLDYEHYLTRQLQPVAEGILPFVEDNFATLLTGQLGLF"
     gene            5091..7997
                     /gene="rapA"
                     /locus_tag="OQP62_001588"
     CDS             5091..7997
                     /gene="rapA"
                     /locus_tag="OQP62_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001117023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HCS1721171.1"
                     /translation="MPFTLGQRWISDTESELGLGTVVAMDARTVTLLFPSTGENRLYA
                     RSDSPVTRVMFNPGDTITSHEGWQLHIDEVKEENGLLVYVGTRLDTEETNVTLREVLL
                     DSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPYSGLRGQRTNLIPHQLN
                     IAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVE
                     MLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLCDAEWDL
                     LVVDEAHHLVWSTDAPSREYMAIEQLAERVPGVLLLTATPEQLGMESHFARLRLLDPN
                     RFHDFEQFVEEQKNYRPVADAVAMLLAGNKLSNDELNRLGDLIGEQDIEPLLQAANSD
                     RDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTVKLPLPTQYQTAIKV
                     SGIMGARKSAEDRARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLV
                     ICAKATTALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG
                     SEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRW
                     YHEGLDAFEHTCPTGRAIYDSAYASLINYLAAPEETDGFDDLIKSCREQHEALKAQLE
                     QGRDRLLEINSNGGEKAQQLAQSIEEQDDDTNLIAFAMNLFDIVGINQDDRGDNLIVL
                     TPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGS
                     STISLLKNKALPVGTLLVELVYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQV
                     EFETFNRQLSAVNRHTGSKLVNAVQQDVHAILQLGETQIEQSARALIDNARREADEKL
                     SGELSRLEALRAVNPNIRDDELAAIDSNRQQVLESLNQAGWRLDALRLIVVTHQ"
     gene            8009..8668
                     /gene="rluA"
                     /locus_tag="OQP62_001589"
     CDS             8009..8668
                     /gene="rluA"
                     /locus_tag="OQP62_001589"
                     /EC_number="5.4.99.28"
                     /EC_number="5.4.99.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA pseudouridine(32) synthase/23S
                     rRNA pseudouridine(746) synthase RluA"
                     /protein_id="HCS1721172.1"
                     /translation="MGMENYNPPQEPWLVILYQDEHIMVVNKPSGLLSVPGRLEAHKD
                     SIMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWG
                     HPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYNVVEFAADNTARVVLKPITGR
                     SHQLRVHMLALGHPILGDQFYASPEALSLAPRLQLHAEMLTITHPAYGNSMTFKVPAD
                     F"
     gene            complement(8763..9575)
                     /gene="djlA"
                     /locus_tag="OQP62_001590"
     CDS             complement(8763..9575)
                     /gene="djlA"
                     /locus_tag="OQP62_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HCS1721173.1"
                     /translation="MQYWGKIIGVAVALMMGGGFWGVVLGLLVGHMFDKARSRKMAWF
                     ANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGDSRTAAQNAFR
                     VGKADNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNEREVLYVIAEE
                     LGISRVQFDQFLRMMQGGAQFGGGYHQQSGGGWQQAQRGPTLEDACNVLGVKTTDDAT
                     TIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAYELIKEQKGFK"
     gene            9829..12183
                     /gene="lptD"
                     /locus_tag="OQP62_001591"
     CDS             9829..12183
                     /gene="lptD"
                     /locus_tag="OQP62_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HCS1721174.1"
                     /translation="MKKRIPTLLATMIASALYSHQGLAADLASQCMLGVPSYDRPLVK
                     GDTNDLPVTINADNAKGNYPDDAVFTGNVDIMQGNSRLQADEVQLHQKQAEGQPEPVR
                     TVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGEN
                     RYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKVGPVPIFYSPYLQL
                     PVGDKRRSGFLIPNAKYTTKNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEF
                     RYLTQAGAGLMELDYLPSDKVYEDEHPKEGDKHRWLFYWQHSGVMDQVWRFNVDYTKV
                     SDSSYFNDFDSKYGSSTDGYATQKFSVGYAVQNFDATVSTKQFQVFNDQNTSSYSAEP
                     QLDVNYYHNDLGPFDTRIYGQAVHFVNTKDNMPEATRVHLEPTISLPLSNRWGSLNTE
                     AKLMATHYQQTNLDWYNANNSKKLEDSVNRVMPQFKVDGKLVFERDMAMLAPGYTQTL
                     EPRVQYLYVPYRDQSGIYNYDSSLLQSDYNGLFRDRTYGGLDRIASANQVTTGVTTRI
                     YDDAAVERFNVSVGQIYYFTESRTGDDNIKWENDDKTGSLVWAGDTYWRISERWGLRS
                     GVQYDTRLDSVATSSSSLEYRRDQDRLVQLNYRYASPEYIQATLPSYYSTAEQYKNGI
                     NQVGAVASWPIADRWSIVGAYYFDTNSSKPADQMLGLQYNSCCYAIRVGYERKLNGWD
                     NDKQHAIYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQSSM"
     gene            12237..13523
                     /gene="surA"
                     /locus_tag="OQP62_001592"
     CDS             12237..13523
                     /gene="surA"
                     /locus_tag="OQP62_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SurA"
                     /protein_id="HCS1721175.1"
                     /translation="MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDG
                     LMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIAN
                     IAKQNNMTMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDAL
                     AKQIGTQNDASTELNLSHILIALPENPTSEQVNDAQRQAESIVEEARNGADFGKLAIT
                     YSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQ
                     SQSISVTEVHARHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGS
                     ANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLDTRKVDKTDAA
                     QKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN"
     gene            13523..14512
                     /gene="pdxA"
                     /locus_tag="OQP62_001593"
     CDS             13523..14512
                     /gene="pdxA"
                     /locus_tag="OQP62_001593"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HCS1721176.1"
                     /translation="MSSAQRVVITPGEPAGIGPDLVVQLAQRAWPIELVVCADGALLT
                     ERAAMLGLPLSLLPYSPDVPAAPQPAGTLTLLPVSLRAPAIPGQLTVENGPYVVETLA
                     RACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRV
                     ALATTHLPLRAIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHM
                     GTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQ
                     GFGRGVNITLGLPFIRTSVDHGTALELAGRGKADVGSFITALNLAIKMIVNTQ"
     gene            14509..15330
                     /gene="rsmA"
                     /locus_tag="OQP62_001594"
     CDS             14509..15330
                     /gene="rsmA"
                     /locus_tag="OQP62_001594"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HCS1721177.1"
                     /translation="MNNRVHQGHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEI
                     GPGLAALTEPVGERLDKLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELSA
                     QLGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRL
                     SVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAF
                     NQRRKTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPLKES"
     gene            15333..15710
                     /gene="apaG"
                     /locus_tag="OQP62_001595"
     CDS             15333..15710
                     /gene="apaG"
                     /locus_tag="OQP62_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Co2+/Mg2+ efflux protein ApaG"
                     /protein_id="HCS1721178.1"
                     /translation="MINSPRVCIQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQ
                     LLGRYWLITNGHGRETEVQGKGVVGVQPRIAPGEEYQYTGGAVIETPLGTMQGHYEMI
                     DENGDAFTIDIPVFRLAVPTLIH"
     gene            15721..16569
                     /gene="apaH"
                     /locus_tag="OQP62_001596"
     CDS             15721..16569
                     /gene="apaH"
                     /locus_tag="OQP62_001596"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     ApaH"
                     /protein_id="HCS1721179.1"
                     /translation="MATYLIGDVHGCYDELIALLQQVEFTPDTDTLWLTGDLVARGPG
                     SLDVLRYVKSLGNSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWL
                     RRQPLLQVDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMP
                     NNWSPELSGLARLRFITNAFTRMRYCFPNGQLDMYSKASPENAPAPLKPWFAIPGPVS
                     EAYSIAFGHWASLEGKGTPEGIYALDTGCCWGGELTCLRWEDKQYFVQPSNRQMDMGE
                     GEAVNA"
     gene            complement(16665..17144)
                     /gene="folA"
                     /locus_tag="OQP62_001597"
     CDS             complement(16665..17144)
                     /gene="folA"
                     /locus_tag="OQP62_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 dihydrofolate reductase"
                     /protein_id="HCS1721180.1"
                     /translation="MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGR
                     HTWESIGRPLPGRKNIIISSQPGTDDRVQWVKSVDEAIAACGDAPEIMVIGGGRVYEQ
                     FLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR"
     gene            complement(17343..19205)
                     /gene="kefC"
                     /locus_tag="OQP62_001598"
     CDS             complement(17343..19205)
                     /gene="kefC"
                     /locus_tag="OQP62_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     protein KefC"
                     /protein_id="HCS1721181.1"
                     /translation="MDSHTLLQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPW
                     GLRLVTDAESILHFAEIGVVLMLFVIGLELDPQRLWKLRASVFGGGALQMVVCGGLIG
                     LFCMFLGLRWQVAELIGMTLALSSTAIAMQAMNERNLTVSQVGRSAFAVLLFQDIAAI
                     PLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLLGRYVTRPALRFVARSGLREV
                     FSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLF
                     FIGVGMSIDFGTLVENPLRILLLLAGFLAIKIVMLWLVARTLGVPAKQRRWFAVLLGQ
                     GSEFAFVVFGAAQMADVLEPEWAKALTLAVALSMAATPIFLVLLTRMEKTATGEAREA
                     DEIDEEQPRVIVAGFGRFGQIAGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDA
                     TRMDLLESAGAAKAEVLINAIDDPQTNLQLSELVKTHFPHLQIIARARDVDHYIRLRQ
                     AGVAMPERETFEGALKSGRQALEALGLGRYEARERADLFCHFNTRMVEEMAKGENDPL
                     SRAAAYKRTSAMLSEIITEDREHLSLIQRHGWQGTAEGKHSGKAADEPEVKPSI"
     gene            complement(19198..19728)
                     /gene="kefF"
                     /locus_tag="OQP62_001599"
     CDS             complement(19198..19728)
                     /gene="kefF"
                     /locus_tag="OQP62_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     oxidoreductase KefF"
                     /protein_id="HCS1721182.1"
                     /translation="MILIIYAHPYPHHSHANKQMLEQAGTLENVEIRSLYHLYPDFNI
                     DVAAEQEALSRASLIVWQHPMQWYSVPPLLKLWMDKVLTHGWAYGHGGTALHGKHLLW
                     AVTTGGGENHFAIGSHPGFAVLSQPLQATALYCGLKWLPPFAMHCTFICDDDTLQAQA
                     RQYKQRLLAWQEVNHG"
     gene            complement(20135..22023)
                     /locus_tag="OQP62_001600"
                     /pseudo
     CDS             complement(20135..22023)
                     /locus_tag="OQP62_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459089.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
BASE COUNT         5221 a         6083 c         5707 g         5015 t
ORIGIN      
        1 tacgtcagca aaaatatctg acgctaaaag ccattttatc gttaaaatat tcattacacc
       61 cgtcacgggg aacgaactca ttcatgaaat atcgctacat cctcagaatc gcggcaggca
      121 tcattctcat tatggccatg gtgtttatcc ataacgctat cgctatttat cagttcagtc
      181 agcaaaacca gacgcgcgta gctgactgcg cgattgtcgc aggagcaggc gttagcggaa
      241 aaacgccttc tcccgttttt caggccagac tggatcatgc catctggctt taccaacaac
      301 acattgtccg cgcgttggta ttaaccggcg gctacggcgc tggcgcaacg gtttccgacg
      361 cggcgatagc ccgtcaatac gttctggaaa aaggcattcc ggctaaggcg atttttattg
      421 aagagcgctc taccgtgacg cgcgaaaata ttcgttacgc aaaacagata ctgcgacaac
      481 aacattgaca tcctccccca ccttcgcact tcgtgactca ggtggggaat tcccattagt
      541 gggtgacgac tgattgctca gcgtctggtt cctgtttcag acgggcggcc tgactgcacc
      601 atccctccac aggcaagaac ggcgtgcccc gccgctaaaa tgttacgagc gccgtttaca
      661 tcagcgttcg ctgtatatcc gcatgcctga cacacaaatt tactttgtga caggcgattt
      721 tctttcgcgg tatgaccaca gcacgcgcaa cgctggcttg tgtatgctgg cggaaccgca
      781 agcacctgac cgccacgcca gagctgtttg tactcaagct ggcggcgcat ttcataccag
      841 ccctgatcca gtatcgaacg gttcagacct gatttggcct tgacgtttcg tccgtgctgt
      901 tctgctgtac cttttgccga tttcgacatg ttactaacct tcaaatcctc aatgactatc
      961 atcgcgtggt ttttgctgat ttcactggta actttatgaa ggtagtcgcg ccggatattg
     1021 gctatgtgcg agtgcagatg ctggactttt cgcttttgtt tctgccagtt actgctgaat
     1081 ctgactttac ggcttaactg ccgctggagt gttgccagct tgcgctgact tgctttaaaa
     1141 ctgttgactg gttggtatac cgtaccgtct gaaagcgtgg cgagttttgt tactcctgcg
     1201 tccagaccga ctatcgttgt gcttgtgtga ttgggttctg ccgtttcaac ttcaacctga
     1261 aacgagatat accactgtcc cgctaactga ctgattgtcg catttttgat tttaccgttc
     1321 acacgttgag attgccggaa ttttacccac ccaagacctg acggtagctt cactctgcga
     1381 ttttcaaggc ggcaatattt ctcaaagttc acaaaacgga ttgagtctct gccctcattt
     1441 tttcgtttcc ataccggggc cttagctgcg agctttttat caaagcaacg tttccatgca
     1501 gtatgcaggt ctttcaactt ttgttgcaga ttgtcggtat aagcatcctg taaaaagatg
     1561 tgtcccggca tttttttcca cactgtaagc atcctgttca actcgaaagc cgaaggtaac
     1621 ttttcgcctg aaccaaggat gcgctttgtc tccgcaagac ctaaattcca gacaaaacgg
     1681 gcgcaaccac ataactgccg caaacgctgc gactgttcag gcgttggttc cagtctgaat
     1741 ttgtaggctt tcaggattag catcatcact cagtgtgtag gagatttgtt tgctacgtta
     1801 ctgtttttac ggtcaacttc aatacaaaaa cataaaatta atcgttcaag acatgccgcc
     1861 ttccttttgc atgttcatct tgtctttata acaaaatacc gtcgaaagat actgggtgag
     1921 tcacactatg ctgcattcca tcagtatgca gcagaagtct gccgtgattt tggcggagaa
     1981 cttaaagaaa gtaacggaga cgtcgatcat gtccacatgc tgatcgaata cccaccaaca
     2041 gtgcagcttt cggtactggt taactcactg aaagctgtga catcccgccg tctgcgaaac
     2101 gaatttattg atttgcgggg agcatacgga aaagccgtgc tctggtcgag gtcatacttt
     2161 gctggctcgt gcggaggtgc gccgctggaa gttgtgaagc aatacattca acatcagcgt
     2221 ggctgatgat ccttcgggct tttcaagccc gtccaaattc ccctcccgcc ttatgtcggc
     2281 gggagtaccc tttggagtta agatggtgca cagcgttact ggtcagcgat ccgctgcata
     2341 tgctgcgtct gaaaactatc gctcaggata atggtatcga tagccgctca tcacccacgc
     2401 gagccacccg ctataaatcc tggtgggcgc aaacccgctt cttactgcga gaaacttttt
     2461 attacagcgg atatcggctt ttacgttata tgcctgtaca aaataacagt attaccccct
     2521 aaaacaggtt ataattagcg tgaatttttt agacaggtaa tcatcgtggc gcaggcaggt
     2581 ttcattttaa cccggcactg gcgggatacg ccgcaaggga cggaggtctc tttctggctg
     2641 gcgacagaca acggcccttt gcaggcgacg ctggcgccgc aagagtccgt ggcgtttatt
     2701 ccgaccagcc agacctcccg cgccgcctcg ctgctacagg cggaaaaaga ctatcgcctg
     2761 acgccgctcc agctgcgaga ctttcaccgt cagccggtat ccggtctgta ttgccgcact
     2821 caccgccagc ttatgcggat ggagaaactg ctgcgcgaaa acggcgtcac cgtttatgaa
     2881 gcggatgtcc gcccgccgga gcgttacctg atggaacgtt ttatcacttc gcctgtttgg
     2941 gtagatggcg agatgcgcaa cggcgttatc cgcaatgcgc gtcttaaacc ccaccccgac
     3001 tatcgaccgc cgctaaaatg ggtctcgctg gatatcgaaa ccacgcgaca cggcgagctg
     3061 tattgcattg gtctggaagg ctgcggccag cgtaccgttt atatgctggg cccggcgaac
     3121 ggcgatgagc gccaactgga cttcgagctt gtgtatgtcg ccagccgccc gcagttgctg
     3181 gaaaaactca acgcctggtt tgccgaacat gatcctgacg tcatcatcgg ctggaacgtg
     3241 gtgcagttcg acctgcgtat gctgcaaaaa tatgccgaac gctaccgtat ccctttacgg
     3301 ctggggcgag acaatagcga actggagtgg cgcgaacatg gcttcaaaaa cggcgttttt
     3361 ttcgcccagg ccagagggcg agtcattatc gatggtatcg acgcgcttaa atccgcgttc
     3421 tggaattttt cgtctttttc gctggaagcc gtctcgcagg aactgctcgg cgaaggaaaa
     3481 tccattgata acccctggga tcgtatggat gagatcgatc gccgctttgc ccaggataaa
     3541 cccgccctcg ccacctacaa cctgaaagac tgcgagctgg tcacgcgcat tttccataaa
     3601 accgaaatca tgccgttttt gttggaacgc gcgacgatca acggcctgcc ggtcgatcgc
     3661 cacggcggtt cggtcgccgc attcgggcat ctttactttc cgcgaatgca ccgcgccggc
     3721 tatatcgcgc ccaatctcgg cgaagtgccg ccgctggcaa gtcccggcgg ctacgtaatg
     3781 gattcacaac ccggattata cgattcagta ctggtgctgg attataaaag cctgtacccg
     3841 tcaattatcc gcacgttttt gattgatccc gtcgggctgg tcgaaggcat ggcgcagccg
     3901 gacccggaac acagtaccga aggtttcctt gacgcctggt tttcacgaga aaagcactgc
     3961 ctgccggaaa ttgttagcca aatctggcac gggcgcgatg aagccaaacg tcagggcaat
     4021 aaaccgctct cgcaggcgct taaaatcatt atgaacgcct tttatggcgt actcggcacc
     4081 acggcctgtc gctttttcga tccccgtctg gcgtcgtcaa tcaccatgcg cggtcatgcg
     4141 attatgcgcc agaccaaagc gctgattgag gcgcagggtt atgacgtgat ttatggcgat
     4201 accgattcca ctttcgtctg gctccggcgc gcgcattcag aagccgatgc ggcggaaatc
     4261 gggcacaggc tggtgcgtca cgtgaacgaa tggtgggcgc agacgttaca acagcaaaat
     4321 ttgaccagcg cgctggaact ggagtttgaa actcactttt gccgttttct gatgccgacc
     4381 atccgcggcg cggatactgg cagtaaaaaa cgctacgcgg gcctgattca ggaaggcgac
     4441 agccagcgca tggtatttaa aggtctggaa acggtgcgga ccgactggac gccgctggcg
     4501 cagcgctttc aacaggagct gtatctgcgc gtttttcgca atgaacctta tcaagactat
     4561 gtgcgcgaga ctatcgataa actgatggcg ggcgaactgg acgcgcagct ggtttatcgt
     4621 aagcgtctgc gtcgcccttt acatgagtac cagcgtaacg ttccgtcgca cgttcgcgcc
     4681 gcccggctgg cggatgaaca aaacctgaag cagggtcgtc cggcgcagta tcagaatcgc
     4741 ggcgccataa aatatgtctg gactgttaac ggccccgagc ccgtggatta ccagcagtcg
     4801 ccgctggatt acgaacacta tcttacccgc cagctacaac ccgtggcgga aggaattctt
     4861 cccttcgttg aagataattt tgctacacta ctgaccgggc aactggggtt attttgacgc
     4921 gtgacgaaag cgccgccttc cagtaccata gcgccctttc cattcctgga cctaattaac
     4981 gccactacca cattagcctg gtagcggggt cgtatactcg caattatcca gtgctgtcgc
     5041 ctgggaatgg cgagtaatgc ctgcaattaa agatatagag ccgaacacat atgcctttta
     5101 cacttggtca acgctggatc agcgatacag aaagcgagct gggacttgga accgttgttg
     5161 cgatggatgc gcgaaccgtc accttacttt tcccgtccac gggggaaaac cgcctgtatg
     5221 cgcgcagtga ttctcccgtg acccgcgtca tgttcaaccc tggcgatacg attacaagcc
     5281 atgaaggctg gcagctacat atcgatgaag taaaagaaga aaatggcctg cttgtttatg
     5341 tcggcacccg cctggatacc gaagaaacca atgtgacgtt gcgcgaagtt ctgctcgaca
     5401 gcaagttggt tttcagtaag ccccaggatc gtctgttcgc cggtcaaatc gatcgaatgg
     5461 atcggttcgc gctgcgctat cgcgcccgta aatttcagag cgagcagtac cggatgccat
     5521 acagcggcct gcgcggtcag cggaccaacc tgatcccgca tcagcttaat atcgctcatg
     5581 atgtgggtcg tcgccacgcg ccgcgcgtac tgctggcgga tgaagtgggc ttaggtaaaa
     5641 ccattgaagc cgggatgatt ctgcatcaac agttattatc cggcgcggcg gaacgcgtat
     5701 tgatcatcgt tccggaaacc ctgcaacacc agtggctggt agaaatgctg cgccgtttca
     5761 acctgcgctt cgcgctgttc gatgacgaac gctataccga agcgcagcac gacgcgtata
     5821 acccgtttga aaccgaacaa ctggtgatct gctcgctgga tttcgcccgc cgcaataagc
     5881 agcgtctgga acatttgtgc gacgccgagt gggatttgct ggtggtcgac gaagcgcatc
     5941 atctggtgtg gagcaccgat gcgccgagcc gtgaatatat ggccatcgaa cagttagctg
     6001 aacgcgtgcc gggcgtgctg ctgctgaccg ccacgccaga acagctgggg atggaaagcc
     6061 atttcgcccg tctgcgcctg ctcgatccga accgtttcca cgatttcgaa cagtttgtcg
     6121 aagaacagaa aaactaccgc cctgtcgccg atgcggtggc catgctgctg gcgggcaata
     6181 aactcagcaa cgacgaactg aacagactgg gcgatctgat cggcgaacag gatattgaac
     6241 cgctgttaca ggccgctaat agcgatcgcg acgacgcgca ggccgcccgt gatgagctgg
     6301 tgtcgatgct gatggatcgc cacggtacca gccgcgttct gttccgcaac acccgtaacg
     6361 gcgtcaaggg gttcccgaaa cgtgaactgc atacggtaaa actgccgctg ccgacccagt
     6421 atcagaccgc cattaaggtc tccggcatta tgggcgcgcg taaaagcgcg gaagatcgcg
     6481 cccgcgatat gctctatccg gaacaaattt atcaggagtt cgaaggcgat accggcacct
     6541 ggtggaactt cgacccacgc gttgagtggc tgatgggcta tctgaccagc catcgttcgc
     6601 aaaaagtgct ggtgatctgc gccaaggcga ccaccgcgtt acagctggag caggtgctgc
     6661 gcgaacgcga aggcatccgc gccgccgtgt tccatgaggg catgtcgatt atcgaacgcg
     6721 accgcgccgc cgcctggttc gccgaagaag ataccggcgc gcaggtgctg ttatgttccg
     6781 aaatcggctc cgaaggacgt aacttccagt ttgccagcaa tctggtgatg ttcgacttgc
     6841 cgtttaaccc ggatctgctg gaacagcgta ttggtcgtct ggatcgtatc ggccaggcgc
     6901 atgatatcca gatccacgtc ccgtacctgg aaaaaaccgc ccagtcggtg ctggttcgct
     6961 ggtatcacga agggctggac gcctttgagc acacttgccc gaccggtcgc gcgatttatg
     7021 attcagccta cgccagtctg attaactatc tggccgcgcc tgaagaaacc gacgggtttg
     7081 acgatctgat caaatcctgc cgcgaacaac atgaagcgct aaaagcccag ttagaacagg
     7141 gccgcgaccg cctgctggag atcaactcca acggtggtga aaaagcccaa cagcttgcac
     7201 aaagcattga agaacaggac gacgacacca acctgatcgc gttcgccatg aacctgttcg
     7261 atatcgtcgg cattaaccag gatgatcgcg gcgacaacct gatcgtgctg acgccgtccg
     7321 accacatgtt ggtgccggat ttccccggcc tgccggaaga cggttgtact atcacgtttg
     7381 aacgtgacgt agccctgtct cgcgaagatg cgcagtttat tacctgggaa catccgctca
     7441 tccgtaacgg actggatctg atcctctccg gcgataccgg cagcagcacc atttcgctgt
     7501 tgaaaaataa agcgctgccc gtcggcacgc tgctggtcga actggtttac gtcgtggaag
     7561 cgcaggcgcc gaaacagcta caactgaacc gcttcctgcc gccgacgccg gtacgtatgc
     7621 tgttagataa aaacggcaac aatctggccg cccaggtcga gtttgaaacc ttcaaccgcc
     7681 agctcagcgc cgtgaatcgc cacaccggta gcaaactggt gaacgccgtt caacaggacg
     7741 tccacgccat tttgcaactg ggcgagacgc agattgaaca gtccgccaga gcgctgattg
     7801 ataacgcgcg ccgcgaggca gatgaaaaac tgtccgggga actgtcgcgt ctggaagcgc
     7861 tgcgcgccgt caacccgaac atccgcgacg acgaacttgc cgctatcgac agcaaccgtc
     7921 agcaggtgct ggaaagcctg aatcaggcag gctggcgtct ggacgcgctg cgtcttatcg
     7981 tcgtcacgca ccaataacgg agccgtacat ggggatggaa aactacaatc cgccgcagga
     8041 accctggctg gttatcctgt atcaggatga gcacattatg gtggtcaata agcccagcgg
     8101 cctgttgtcc gtgccggggc gtctggaagc gcacaaagac agcattatga cgcgtatcca
     8161 gcgcgactac ccgcaggcag agtcggtgca tcgtctggat atggccacca gcggcgtgat
     8221 tgtagtggcg ctgaccaaag ccgcggagcg ggagctaaaa cgccagttcc gcgaacgtga
     8281 gccgaaaaag cagtatgtgg cgcgcgtatg ggggcatccc tccccggcgg aaggactggt
     8341 cgacttaccg ctcatctgcg actggccgaa ccggccaaag cagaaagtgt gttatgaaac
     8401 cggcaaaccg gcgcaaacgg aatataacgt ggtggaattt gcggcggata ataccgcccg
     8461 cgtggtgctc aaaccgatca ccgggcgttc gcatcagctg cgtgtgcata tgctggcgtt
     8521 aggccacccg atcttaggcg atcagtttta cgcctcgccg gaagcgttgt cgctggcgcc
     8581 gcgtttgcag ttacacgccg aaatgctgac cattacccat cccgcttacg gtaacagcat
     8641 gacgtttaaa gtcccggcag atttttaaat tctgagccaa tttatgccgg agcgcttcgc
     8701 ttgcccggcc tacattcatt aacgtaggcc ggataaggcg ctagccgcat ccggcaattc
     8761 aatcacttga agcctttctg ttctttgatt agctcatacg ctttctgaat ttcctgcgct
     8821 ttttgcttcg ccatctccat catttccggc ggcaaccctt tggccaccag cttatcggga
     8881 tgatgctcgc tcatcagttt gcgataagcg cgtttaatgg tggttgcatc atcggtggtt
     8941 ttaaccccca gcacattaca ggcatcttcc agcgtcgggc cgcgctgcgc ctgctgccag
     9001 ccgccgccgg actgttgatg ataaccgccg ccaaactgcg cgccgccctg catcatgcgc
     9061 agaaactgat cgaactgtac gcgggaaata cctaactctt ccgcaatcac atacagcact
     9121 tcccgctcat tagggtgcag tgaaccatcg gcaaacgccg cctggatctg aatttccaga
     9181 aacatccgga tcagatcaaa acgcccgaag cagacgctac gaaactgccg catcttttca
     9241 cgtaatgggt aattatccgc ttttccgacc cgaaaggcgt tctgcgcggc agtacgtgaa
     9301 tcgccgtgta aattcatacg atccatcaac tgactggcga tatgaatatc cgcttccgtc
     9361 acccgtcctt ttgatttggt taagtggccc atcacctcaa aggtggtggc aaaaaacagc
     9421 gcctgccgtt cccgctggtt ggcaaaccac gccatttttc ggctgcgggc tttgtcgaac
     9481 atatggccca ccagcagacc caggaccacg ccccaaaagc cgccgcccat catcagggct
     9541 acggcgacgc caattatctt tccccagtac tgcatagact ccccaaaacg ttacgctatc
     9601 ggtgaggcta tctcccacaa aataaggtgc ttttccgcga atgaaggcta cggtcatttg
     9661 tgggacatcg cctataattt gcattatcat acctgtcatt caatgccgtg cctaacacca
     9721 cagacgctaa acggcaggat taacactggc gcagcgaaga tgagtaagtt aggctgtgac
     9781 cgtttgtcac gcgcaacgct accgatgatg gaacaataaa tacaacgtat gaaaaaacgt
     9841 attcccactc ttctggccac catgatcgcc agcgcccttt atagtcatca ggggctggca
     9901 gccgatctcg cctcacagtg tatgttgggc gtgccgagct acgatcgtcc tctggtaaaa
     9961 ggcgatacca acgatctgcc ggttactatc aatgccgata acgctaaagg taactacccg
    10021 gacgatgccg tttttaccgg caacgtggac attatgcagg ggaatagccg cctgcaagcg
    10081 gatgaagtgc agcttcatca gaagcaggcg gaaggtcagc cggaacctgt acgcaccgtc
    10141 gatgcgctgg gtaatgtgca ttatgatgac aatcaggtca tccttaaagg gccgaagggc
    10201 tgggcgaacc tgaacaccaa agacacgaac gtctgggaag gcgattacca aatggtgggc
    10261 cgtcaggggc gcggtaaagc cgatctcatg aagcagcgtg gcgaaaaccg ctataccatt
    10321 ctggaaaacg gcagctttac ctcctgtctg cctggctccg atacctggag cgtggtgggg
    10381 agtgaagtca tccatgaccg tgaagaacag gttgcggaga tctggaacgc ccggtttaaa
    10441 gtaggtccgg ttccgatctt ttatagcccc tatttacagc tacccgtcgg tgacaaacgt
    10501 cgctcaggtt tcctgatccc gaacgcgaaa tacacgacca agaactattt cgagttctac
    10561 ttaccgtatt actggaacat cgcgcccaat atggacgcca ccatcacccc gcactatatg
    10621 caccgccgcg gcaatattat gtgggagaac gaattccgtt atctcacgca ggccggcgcc
    10681 gggttgatgg aattagatta tctgccttct gataaagtct acgaggacga acatcccaaa
    10741 gagggcgata agcaccgctg gttattctac tggcagcact caggcgtgat ggatcaggtg
    10801 tggcgtttta acgtcgatta caccaaagtc agcgactcca gctactttaa tgatttcgac
    10861 agtaagtacg gttccagtac cgacggctac gcaacgcaga aattcagcgt cggctacgcc
    10921 gtacaaaact ttgacgctac ggtgtcgacc aaacaattcc aggtctttaa cgatcagaac
    10981 accagcagct attcagcgga gccgcagtta gacgttaact actaccataa cgatctcggc
    11041 ccgtttgata cccggattta cggtcaggcg gtgcactttg tcaacaccaa agacaatatg
    11101 ccggaagcga cccgcgtcca cctggagccg accattagtc tgccgctctc caaccgctgg
    11161 ggcagtctga acaccgaagc gaagctgatg gcgacgcact atcagcagac gaatctggac
    11221 tggtacaacg ccaataacag caaaaaactg gaagattcgg ttaaccgcgt catgccgcag
    11281 tttaaagtcg acggtaagct cgtcttcgaa cgcgatatgg cgatgctggc gccggggtat
    11341 acccaaacgc tggaaccacg cgtgcagtac ctgtatgtgc cgtaccgcga ccagagcggc
    11401 atctataact acgattcttc tttgctgcaa tccgactata acggcctgtt ccgcgaccgc
    11461 acttatggcg gtctcgaccg tattgcttcc gccaaccagg tcacgaccgg cgtcacaaca
    11521 cgcatttatg atgatgccgc cgttgaacgt tttaacgttt ctgttggtca aatctactat
    11581 ttcacggagt ctcgcaccgg cgatgacaac attaaatggg agaatgacga caaaaccggt
    11641 tcgctggttt gggcaggtga cacttactgg cgtatttcag aacgctgggg gctgcgtagc
    11701 ggagtgcagt acgatacccg tctggatagc gtcgctacca gcagcagcag cctcgaatac
    11761 cgtcgggatc aggatcgtct ggtacagttg aactaccgct atgccagccc ggaatatatt
    11821 caggctacgt tgccttcgta ttattccacg gcagagcagt ataaaaacgg catcaaccag
    11881 gtgggcgcgg tggcaagttg gccgattgcc gatcgctggt cgattgtcgg cgcgtactac
    11941 ttcgatacca attcgagcaa acctgcagac cagatgctcg gcttgcagta caactcttgc
    12001 tgctatgcga tccgcgtcgg atacgaacgt aagctgaacg gttgggataa cgataaacaa
    12061 cacgcgattt atgataacgc gattggcttc aacattgagc tgcgcggttt gagctctaac
    12121 tacggcctcg gcacgcaaga aatgttgcgt tcgaacattc tgccgtacca aagctctatg
    12181 taatctgatt gatttacaac gtaatccgca ttgcggttaa ttgaaatgga aaaagtatga
    12241 agaactggaa aacgctgctt ctcggtatcg ccatgatcgc gaataccagt ttcgctgccc
    12301 cccaggtagt cgataaagtc gcagccgtcg tcaataatgg cgtcgtgctg gaaagcgacg
    12361 ttgatggctt aatgcaatca gtcaaactca acgcgggtca ggcaggtcag cagcttccgg
    12421 acgacgccac gctgcgccac cagatcctgg aacgtttgat tatggatcaa attatcctgc
    12481 agatgggtca gaagatgggg gtgaagatca cggatgagca gttggatcag gccatcgcca
    12541 acatcgccaa acaaaacaat atgacgatgg atcagatgcg cagccgtctg gcttacgatg
    12601 ggctgaacta ttcaacctac cgtaaccaga ttcgtaaaga gatgattatc tctgaagtgc
    12661 gcaacaacga agttcgtcgc cgtatcaccg ttttgccgca agaagttgac gcgctggcaa
    12721 aacagattgg cacccaaaac gacgccagca ccgagctgaa cctgagccat atcctgattg
    12781 ctctgccgga aaacccaacc tccgagcagg ttaacgacgc gcagcgccag gcggaaagca
    12841 ttgttgaaga agcgcgtaac ggcgcagatt tcggcaaact ggcgattacc tactctgccg
    12901 accagcaggc gttaaaaggt ggtcagatgg gctggggccg tattcaggag ctgccgggga
    12961 ttttcgccca ggcgctgagc accgcgaaga aaggcgacat tgtcggcccg attcgctccg
    13021 gcgtcggctt ccacattctg aaagtaaacg acctgcgcgg tcagagccag agtatctccg
    13081 tgaccgaagt tcacgctcgt cacattctgc ttaagccgtc gccgatcatg aacgatcagc
    13141 aggcgcgcct gaagctggaa gaaatcgcgg ctgacattaa gagtggtaaa accacatttg
    13201 ccgcagcggc gaaagagtac tctcaggacc cgggctccgc taaccaaggc ggtgatttgg
    13261 gttgggctac gccagatatt ttcgatccgg cgttccgcga cgcgctaacg aagctgcata
    13321 aaggccaaat aagcgcgccg gtacactcct ctttcggctg gcatctgatc gaattgctgg
    13381 atacgcgtaa ggtagacaaa accgatgcgg cgcagaaaga tcgcgcttat cgtatgctga
    13441 tgaaccgtaa attctcagaa gaagcggcga cctggatgca agaacagcgc gccagcgctt
    13501 acgttaagat tttgagtaac taatgagcag tgcgcaacgc gttgttatca ctcccggcga
    13561 acccgccggg attggccccg atcttgtcgt ccaactggcg caacgcgcgt ggccgattga
    13621 actggtcgtc tgtgcggacg gcgcgctcct gacggagcgg gccgccatgc tcggcctgcc
    13681 cctctcgctt ctcccttact cgcctgatgt ccccgctgcg ccgcagcccg cgggaacgct
    13741 gaccctattg ccggtctcgc tgcgcgcgcc tgccatcccc ggtcagttga cggtagaaaa
    13801 tggcccctac gtggtagaga cgctggcgcg agcgtgtgat ggctgtctga acggtgaatt
    13861 tgccgcgctg atcacaggcc ccgtgcacaa aggcgttatt aacgacgcag gcattccgtt
    13921 taccggtcat accgagtttt tcgaagagcg ttcgcaggcg aaaaaagtcg tgatgatgct
    13981 ggcaaccgaa gaacttcgcg tggcgctggc gaccacgcat ctgccgctac gggcgattgc
    14041 agacgccatc acccctgcgc ttttgcacga agtgattgct attttgcatc acgatttgcg
    14101 gaccaaattt ggtattgccg aaccgcgcat tcttgtctgt ggcctgaatc cgcacgcggg
    14161 cgaaggcggt catatgggca cggaagagat agacaccatc attccggtgc tcgacgagct
    14221 gcgggcgcag gggatgaaac tcaacgggcc gctacctgct gatacgctgt ttcagcccaa
    14281 atatctcgat aatgccgacg cggtgctggc aatgtaccac gatcagggcc tgcccgtgct
    14341 aaaataccag ggattcggtc ggggagtgaa tattacgctc ggcctacctt ttattcgaac
    14401 ctccgttgat cacggcaccg cgcttgaact ggcgggccga ggaaaagcgg atgtcggcag
    14461 ttttattacg gcgcttaatc tcgccatcaa aatgattgtt aatacccaat gaataatcga
    14521 gtccatcagg gccatttagc ccgtaaacgc ttcgggcaaa actttctcaa cgatcggttt
    14581 gtgatcgaca gtattgtttc tgctattaat ccgcaaaaag gccaggcgat ggttgaaatc
    14641 ggccccggtc tggcggcgct gacggagccg gtcggcgaac gactggataa gctcacggtc
    14701 attgaacttg accgcgatct ggcggcgcgt ttgcaaaccc atccgttttt agggccgaag
    14761 ctgactattt atcagcagga cgccatgacc atgaactttg gcgaactgtc tgcgcagttg
    14821 ggccagccgc tgcgtgtgtt cggcaatctg ccctataata tctccacccc gctgatgttc
    14881 catctcttta gctatactga tgccattgcc gacatgcact ttatgttgca aaaagaagtg
    14941 gtaaatcgtc tggttgcagg gccgaacagc aaagcgtatg gtcgtttaag cgtgatggcg
    15001 caatattact gtcaggtgat cccggtgctt gaagtgccgc catccgcctt cacgccgccg
    15061 cccaaagtgg actccgccgt ggtgcgtctg gttccacacg caacgatgcc ttacccggtt
    15121 aaagatattc gcgtgttgag ccgtattacc accgaggcct ttaaccagcg ccgtaaaacg
    15181 atccgtaata gtctcggcaa tctttttagc gttgagacgt tgacggaaat gggtattgac
    15241 ccggcaatgc gcgcggaaaa tatctctgtc gcgcagtact gccagatggc caactatctg
    15301 tcggaaaacg cgcctttgaa ggagagttaa acatgatcaa ttcgcccaga gtgtgtattc
    15361 aggtgcaaag cgtctacatt gaggcgcaat cctcacctga cgatgaacgt tacgtttttg
    15421 cctataccgt aaccatccgc aatctgggtc gggcgccagt gcagctattg ggccgctact
    15481 ggctgattac caatggtcat ggccgtgaaa ctgaagtcca gggcaaaggt gtggttggcg
    15541 tccagccgcg cattgcgcct ggcgaagagt atcagtacac cggcggcgcg gtaattgaaa
    15601 cgccgctggg caccatgcag ggtcattacg aaatgatcga tgaaaatggc gacgccttta
    15661 ccatcgacat tcccgtgttt cgactcgccg tccctacact cattcactaa aattataaca
    15721 atggcaactt atctcatcgg cgacgttcac ggttgctacg acgaactgat cgccttatta
    15781 cagcaagtgg aatttacgcc agatacagac actctatggc tgactggcga tttggtcgcc
    15841 cgcggtcccg gttcgctgga cgtgttacgc tacgtcaaat cgcttggcaa tagcgtgcgt
    15901 ttggtgctgg ggaatcacga tttacacctg ttggccgtat tcgccgggat tagccgcaac
    15961 aaacctaaag accggctgac cccgcttctt gaagcgccgg acgccgatga gctgttgaat
    16021 tggttacgcc gtcagccgct gttgcaggta gatgaagaga aaaagctggt catggcgcat
    16081 gcgggtatta ccccacagtg ggatttgcag acggcaaaag agtgcgcccg cgatgttgaa
    16141 gcggtgctgt cgagcgactc gtacccgttt ttcctcgacg cgatgtatgg cgatatgccg
    16201 aataactggt cgccggagtt aagcggtctg gcgcggctac gctttattac taatgccttt
    16261 acccgtatgc gttactgctt tcctaacggt caactggata tgtacagcaa agcgtcgccg
    16321 gaaaatgccc ctgcgccgct gaagccgtgg ttcgccattc cgggaccggt gagcgaggct
    16381 tacagtattg ctttcgggca ctgggcgtcg ctggaaggga aagggacgcc agaaggtatt
    16441 tacgcgctgg ataccggctg ctgctggggc ggggagttaa cctgtttacg ttgggaagat
    16501 aaacagtatt ttgtgcagcc gtcaaaccgc cagatggata tgggcgaagg cgaagcggtc
    16561 aacgcctgat aggtttatgc ctgatggcgc tacgcttatc aggcctacat ccggctcaag
    16621 agtaggccgg ataaggcatt tcgccgccat ccggcactac agcgttaacg acgctccaga
    16681 atctcgaaac aatagctgtg agaattctgc gcgtcggcat cgtgaaactc actgaatacc
    16741 gattcccagt catccggttc ataatccgga aaatgggtat cgccttcgac ttccgcatca
    16801 atatgcgtca gataaagctt ctgcgccttt ggcaggaact gctcgtacac gcgcccgccg
    16861 ccaatgacca taatttccgg cgcatcgccg caagcggcaa tcgcctcatc gacagacttc
    16921 acccactgca cgcgatcgtc ggtgcccggc tggctgctga taataatatt tttacgtccc
    16981 ggtaaggggc gtccgatgga ctcccaggtg tgacgtccca tgacgacagg tttatttaac
    17041 gtgttacgtt taaaccatgc gagatcggca ggcaggttcc acggcatggc gttttccata
    17101 ccgatgacgc gatccaccgc taacgccgca atcagactga tcattaatta tttcctgata
    17161 caaaaaaaat tgccgccact atacgtaaag cgcaatcttt cgtcgactga cgaaaagagg
    17221 atgagcacga aaatttttcg ttctgctggc gacgccactc atttgatgtg gagcgccagc
    17281 attacagtag ttcaaaaaca gccaattagc agtaaagttt gcagaacatc acatttttta
    17341 ctttagattg acggtttgac ctcgggttca tcagcggcct tcccggaatg tttgccctca
    17401 gccgttccct gccagccgtg gcgctgaatc aacgacagat gctcccggtc ctcggtaata
    17461 atttcgctca acatcgcgct ggtacgttta taggcggcgg cgcgagataa cggatcgttt
    17521 tcccctttcg ccatctcttc caccatccgg gtattaaaat gacagaacag atccgcgcgc
    17581 tcgcgggctt cataacgccc cagccccagc gcctccaaag cctgtcgccc gcttttgagc
    17641 gcgccttcga aggtttcacg ttcgggcatc gccacaccag cctggcgcag gcgaatgtaa
    17701 tgatcgacat cacgggcgcg ggcgataatc tgcagatgcg ggaaatgcgt cttcaccagt
    17761 tcactcagtt gcaaattggt ttgcggatcg tcaatggcgt taatcaatac ctccgccttc
    17821 gccgctccgg cagattccag caaatccata cgcgtcgcgt cgccataaaa aaccttcatg
    17881 ccgaatttac gcagcgtttc gatatgatcg gggtcgtgat cgagcaccac catcttcacc
    17941 ccgctcgaca gcagtaaacg cccggctatc tgcccaaatc gcccaaaccc ggccacaatg
    18001 acccgcggct gctcttcgtc gatttcatcc gcctcgcgcg cttcacccgt tgcggtcttt
    18061 tccatgcgcg tcagcagcac cagaaaaatc ggcgtggccg ccatcgacag cgcgaccgcc
    18121 agcgtcagcg cttttgccca ttccggctca agtacatccg ccatttgcgc cgcgccaaaa
    18181 accacaaacg caaactcact tccctggcct aataagacgg caaaccagcg acgctgtttt
    18241 gccggtacgc ccagggtcct cgcgaccagc cacagcatga cgattttgat tgccagaaaa
    18301 ccggccaaca acagcagaat gcgcagcgga ttctccacca gcgtgccgaa atcaatcgac
    18361 atgccgacgc caataaagaa caaccccagc agcaacccct taaagggttc aatatcgctt
    18421 tccagcgcat gacgatattc cgaactcgcc agcagaacgc ccgccaggaa cgcgcccatc
    18481 gccattgaca gcccaacctc ttccagcaac aggccgaaac caaacaccag aaatagcgcc
    18541 acggcgctga acacctcccg caaaccagaa cgcgcgacaa agcgcagcgc cgggcgcgta
    18601 acgtagcgtc ccagcaacac caccagcgcc aacgcgcctg cgactttcaa cgccgatagc
    18661 gcaaacgcgc caagcgtggt ggatgcgccg ctggcggcca gcagaggaat catcgccacc
    18721 agcgggatcg ccgcgatatc ctggaacaag agcactgcaa atgcgctacg ccctacctgt
    18781 gaaacggtca ggttacgctc attcattgcc tgcatggcga tagccgtgga cgaaagcgcc
    18841 agcgtcatgc caatcagttc cgccacctgc caacgcaggc caagaaacat acagaacaga
    18901 ccaatcagtc cgccgcagac caccatctgt aacgcgccgc cgccaaatac cgaggcgcgc
    18961 agcttccata accgttgcgg gtccagttca agcccaataa caaacaacat cagcacgacg
    19021 ccgatttccg caaaatgcag aatagattcg gcgtccgtca ccagccgtag cccccagggg
    19081 ccgataatgc aacccgcaat cagatacccc agcactgatc ctaagcccaa acgtaccgca
    19141 atcggcacaa tcaacgccgc tgaaccaaga tagatcagcg cctgcagtag agtatggcta
    19201 tccatgattc acctcctgcc atgccagtaa acgctgttta tactgacgcg cctgcgcctg
    19261 taaggtgtcg tcatcgcaaa tgaacgtgca gtgcatggca aacggcggca gccatttgag
    19321 gccgcaatag agcgccgtcg cctgtagcgg ctgagaaagg acggcaaatc ctggatggga
    19381 gccgatagca aagtggtttt caccaccgcc ggtcgttacc gcccacagca gatgtttacc
    19441 atgcaatgcc gtaccgccat gaccgtaagc ccagccgtgg gtgaggactt tatccatcca
    19501 taatttgagt aaaggaggga cgctgtacca ctgcatcgga tgctgccaga cgataagact
    19561 cgcgcgcgac agcgcctctt gctcggcggc tacgtcaata ttgaaatcgg gatagaggtg
    19621 ataaagcgaa cgtatttcga cgttttccag cgtccctgcc tgttcaagca tctgcttatt
    19681 cgcatgagaa tgatgcggat acggatgcgc ataaataatg aggatcatga ttagcctgtg
    19741 atgatctgtt ttttatcaca aagtgtagtg acaaattcgc caggctaata gtgaatatta
    19801 ttgagcggct aatcagaaaa aattgaatta acgccagcaa ggagttgacg ccatcctgcc
    19861 cccggaagat gccctcgaag ggccgcaggc gtttgtggaa aagcgcgatc cggtgtggaa
    19921 aggttggtga tgatggcagc cttaaattgc tgacaaatcg gtttaaggcc ttcttgtcgg
    19981 gtggcgctgc gctaaatttt cctgtaatga ctgtaatatc aatccattac atgatgacac
    20041 aggcccaata agcgcagcgc caacagcatc tgaacctcca gacacgctgg atgctagatc
    20101 accgacgcat aaattaacct aatgggtcag gctcttaatc tttcgccatg cggttaaatt
    20161 gctcaatagt aagatcccat ggctcacggg ccgcatccgg cataaaactg ccgtcatcca
    20221 cgccaatttc gtctttgata attttattca gtttttcatt catcgtaaga atgagatcct
    20281 gatatttctg tttatcagca gcaaggttat ggttctcatc aggatcattt ttaagatcgt
    20341 aaagttcaag atcgttgtac ttaataagat cctcccaggt ttccggcgta ttatgctccc
    20401 ttagcgagaa atagcgtgca aacttataac ggccatcgtt aatcatccgc gtccctgaac
    20461 gatggctgaa atcaggatgc aaatgcgata tttcctgctt gatttgcgcc accgtttttg
    20521 tttatctctt tgtagcgcga taacacggtg gagataatgg gcatcggtat acaagatcat
    20581 gccatagcaa tataagctgg catttctcac cgcattaacc gcaacgctct ccgggttttt
    20641 tagcaatccg ctaaaattaa cgcctttgcg gttgcctaac gcctggtgct gtttttcttc
    20701 cggcaaaccg gtcagcccaa ctaatgtcgg cgcaatatca agatgacagg tcaacgcctg
    20761 acatttctta ttaccggggt acgccgggtg ggaaataatc atcggtacat ggatctgttc
    20821 tttataaacg gaagcgcctt taccgtgcat ctgatggctt ccgcctaatt cgccatgatc
    20881 ggcagtaaat acaacaatcg ttttatcagt taacttgagg gcatccagtt catttaatat
    20941 ccggtcaagg tgagtatcac aatcgcggat acagttgaaa tagtagtcaa gcagtttacg
    21001 ccaacgacga tcttcatcag gaaactgccc ttccagcgca gcgcgcgccg tctggtattc
    21061 aagatgcgcc ggcggtcttc cctgctcatt gaatgattga tgcctgtttg ccggcagcgg
    21121 atagttcggc cagcttgcct gataaagctc gttttccggc ggctgcgtgg gcgccagggt
    21181 attatcatcc tgatccaact cgccacgcca ctgtaccttt tctccttctt tatcggtatc
    21241 aataaacatg acgtcatgag gattaacgag gttaacggcc aggaaccagg gcttgtgttg
    21301 gtcattcaag ggctgcccct tgcatcttaa ccaatttata gtctgagccg tggtggttga
    21361 atcataaaaa tagccgcctt tactatggcc tataatatcg ccgatgccgt gatagtcagc
    21421 aaaaccatat ttttccataa ttttatgtaa ttctggttca ggaatatccc cgacatcaat
    21481 atcctcatct ttttcgtcag gcaaaggctt ctccagtttt tctgtaagat gccacttacc
    21541 tttataggcc gtatagtatc ccagttcccg catcatatgg cctgtggttc caagagcggg
    21601 gtcaaggtca taaggcatcc agggtaatcc cagattatca aacatctttg tctggggcat
    21661 atgtaagccg gtatacaata cggagcggga aggcgtacag acattactgg tattctgatg
    21721 attacagaat gtcacccccg ttttcatgag ccgctctctg ccgggtacag ggaaaggaaa
    21781 cgtaggaaaa aaacgctcct agtcggtcac gactaacaga atattatatc cttctggcaa
    21841 tttttccggg atttcgccag taaacggttt atcccacgtc ggtttcgcct tgacggcgca
    21901 tttttcatca gcctttaccg cgccggatag cataccgccg gcggcaagaa taccggcgct
    21961 ggttaacagt ttcctacgcg taagatccgt ctcttctgcg gacagatttt tcttattact
    22021 catatt
//
LOCUS       DAJVSD010000051        21885 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.051, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000051 DAJVSD010000000
VERSION     DAJVSD010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 21885)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21885)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21885
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.051"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(33..1142)
                     /gene="apbC"
                     /locus_tag="OQP62_001601"
     CDS             complement(33..1142)
                     /gene="apbC"
                     /locus_tag="OQP62_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HCS1721183.1"
                     /translation="MNEQSQAKSPDTLRAMVAGTLANFQHPTLKHNLTTLKALHHVAW
                     MDDTLHVELVMPFVWNSAFEVLKEQCSADLLRITGAKAIDWKLSYNIATLKRVKNQPG
                     INGVKNIIAVSSGKGGVGKSSTAVNLALALEAEGAKVGVLDADIYGPSIPTMLGAEDQ
                     RPTSPDGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDY
                     LVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVE
                     NMSMHICSNCGHHEPIFGTGGAQKLAEKYHTQLLGQMPLHISLREDLDRGTPTVVSRP
                     ESEFTAIYRELADRVAAQLYWQGEVIPGEIAFRAV"
     gene            1307..3340
                     /gene="metG"
                     /locus_tag="OQP62_001602"
     CDS             1307..3340
                     /gene="metG"
                     /locus_tag="OQP62_001602"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HCS1721184.1"
                     /translation="MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGH
                     EVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSDE
                     NRELSELIYTRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSADQYGDNCE
                     VCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANK
                     MQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDTT
                     SFDEYWKKDSDAELYHFIGKDIVYFHSLFWPAMLEGSHFRKPTNLFVHGYVTVNGAKM
                     SKSRGTFIKASTWLKHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVN
                     LASRNAGFINKRFDGVLAAELADPQLYKTFTDAAAVIGEAWESREFGKAIREIMALAD
                     VANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPTLSERVEAFLN
                     SELNWDAIEQPLLSHKVNTFKALYNRIDMKQVEALVEASKEEVKAAAAPVTGPLADFP
                     IQETITFDDFAKIDLRVALIENAEFVDGSDKLLRLTLDLGGEKRNVFSGIRSAYPDPQ
                     ALIGRQTVMVANLAPRKMRFGVSEGMVMAAGPGGKDIFLLSPDDGAKPGQQVK"
     gene            3581..4039
                     /locus_tag="OQP62_001603"
     CDS             3581..4039
                     /locus_tag="OQP62_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YehR family lipoprotein"
                     /protein_id="HCS1721185.1"
                     /translation="MKISGKLLSAALASVLVFSLAGCGDKEESKTFNANLAGTEISIT
                     YTYKGDKIIKQTSESKISYATVGAKTKEDAAKILDPLSAKYKNIAGVEEKLTYEDTYA
                     QENVSVDMEKVDFKALQQISGTMVSGDTSKGISMKQTQTLLEAAGFKEAK"
     gene            4211..4741
                     /locus_tag="OQP62_001604"
     CDS             4211..4741
                     /locus_tag="OQP62_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YehR family lipoprotein"
                     /protein_id="HCS1721186.1"
                     /translation="MQVLRLMALPLFALSLSVSITGCDQKNDTLQGKQNNMTAFIKKI
                     AASKESEETQRYVGNLNGIEIKLTYYYKGDIVLRQISEHKLLYKTLKANNKEEAQKML
                     SQVGEAYQGMPGLTERIDYYDSYATEYVDIDFTQAKISDLCKLPGSSIDNCSAYYLSM
                     IRSQKLLEESGYHRIN"
     gene            complement(4798..5265)
                     /locus_tag="OQP62_001605"
     CDS             complement(4798..5265)
                     /locus_tag="OQP62_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1456 family protein"
                     /protein_id="HCS1721187.1"
                     /translation="MLSNDILRSVRYILKANNTDLARILALGNVDATPEQIAIWLRKE
                     EEEGFQRCPDIVLSSFLNGLIYEKRGKDEAAPALTAERRINNNIVLKKLRIAFSLKTD
                     DILAILTGQLFRVSMPEITAMMRAPDHKNFRECGDQFMRYFLRGLAAREHAAK"
     gene            complement(5312..6031)
                     /gene="yehT"
                     /locus_tag="OQP62_001606"
     CDS             complement(5312..6031)
                     /gene="yehT"
                     /locus_tag="OQP62_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BtsR"
                     /protein_id="HCS1721188.1"
                     /translation="MIKVLIVDDEPLARENLRILLQGQDDIEIVGECANAVEAIGAVH
                     KLRPDVLFLDIQMPRISGLEIVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKP
                     IEEKRLEKTLHRLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMDDVAFVSSRM
                     SGVYVTSSEGKEGFTELTLRTLESRTPLLRCHRQFLVNMAHLQEIRLEDNGQAELILR
                     NGLTVPVSRRYLKSLKEAIGL"
     gene            complement(6028..7713)
                     /locus_tag="OQP62_001607"
     CDS             complement(6028..7713)
                     /locus_tag="OQP62_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HCS1721189.1"
                     /translation="MYEFNLVLLLLQQMCVFLVIAWLMSKTRLFIPLMQVTVRLPHKL
                     LCYVTFSIFCIMGTYFGLHIEDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSM
                     GGMTALSCMISTIVEGLLGGLVHSVLIRRGRPDKVFSPLTAGAITCVAELVQMLIILL
                     IARPFDDALHLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSVTALKVAAS
                     TEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISSG
                     YTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNR
                     LFSSINRTLGEGIAQLLSAQILAGQYERQKALLTQSEIKLLHAQVNPHFLFNALNTIK
                     AVIRRDSEQASQLVQYLSTFFRKNLKRPSEIVTLADEIEHVNAYLQIEKARFQSRLQV
                     QLDVPSTLSRQKLPAFTLQPIVENAIKHGTSQLLDTGNVAIRARREGQHLMLDIEDNA
                     GLYQPSAGSSGLGMSLVDKRLREHFGDDYGISVACEPDCFTRITLRLPLEEDA"
     gene            7936..8667
                     /gene="mlrA"
                     /locus_tag="OQP62_001608"
     CDS             7936..8667
                     /gene="mlrA"
                     /locus_tag="OQP62_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MlrA"
                     /protein_id="HCS1721190.1"
                     /translation="MALYTIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFND
                     ADIDRIREIKRWIDNGVQVSKVKVLLSSDSSEQPNGWREQQEILLHYLQSSNLHSLRL
                     WVKERGQDYPAQTLTTNLFVPLRRRLQCQQPALQALLGILDGILINYIALCLASARKK
                     QGKDALVIGWNIHDTTRLWLEGWVASQQGWRIDVLAHSLSQFRPELFDGKTLLVWCGE
                     HQTLAQQQQLLAWRAQGHDIHPLGV"
     gene            8727..8834
                     /locus_tag="OQP62_001609"
     CDS             8727..8834
                     /locus_tag="OQP62_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YohO"
                     /protein_id="HCS1721191.1"
                     /translation="MRVAKIGVIALFLLMAIGGIGGVMLAGYSFILRAG"
     gene            complement(8815..9546)
                     /locus_tag="OQP62_001610"
     CDS             complement(8815..9546)
                     /locus_tag="OQP62_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1721192.1"
                     /translation="MKRLCDPLLWLIVLFLLLLFGLPYSQPFFAALFPDLPRPVYQQE
                     SFAALALAHFWLVGISSLFAVVVGVGAGIAVTRESGKEFRPLVETIAAVGQTFPPVAV
                     LAIAVPVMGFGQQPAIIALILYGVLPILQATLAGLGAVPASVMSVASGMGMSRRQQLY
                     QVELPLAAPVILAGIRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGAL
                     LVALAAIIIDRLFERLTRALTRHAK"
     gene            complement(9530..10477)
                     /locus_tag="OQP62_001611"
     CDS             complement(9530..10477)
                     /locus_tag="OQP62_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1721193.1"
                     /translation="MIEFNHVSKTFGDQQAVSDLNLHFSEGSFSVLIGTSGSGKSTTL
                     KMINRLVEHDSGTIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWTVAQNIATVPQL
                     QKWSRARINDRIDELMALLGLESALRDRYPHQLSGGQQQRVGVARALAADPQVLLMDE
                     PFGALDPVTRGALQQEMTRIHQLLGRTIVLVTHDIDEALRLADHLVLMDGGHVIQQGS
                     PLSMLTSPENDFVQAFFGRSELGVRLLSLRSVGDYVRRHEQLSGDALVEEMTLRDALS
                     MFVARRCDVLPVANQQGEPCGTLHFRDLLSETSPRETTV"
     gene            complement(10470..11639)
                     /locus_tag="OQP62_001612"
     CDS             complement(10470..11639)
                     /locus_tag="OQP62_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1721194.1"
                     /translation="MSDAAKKITVNRVLLLLVVLALLAVALPFINYAPNRLVSGEGRQ
                     LWEIWPATIWMLTGAGCALFTLCFVPGKRGSVLTLMMAQTLFIVMLWGVGRAATQLAQ
                     EGSPLARTSLGSGLWLGLGLMLLACSDAIRRITVGPLWRWLLHAQIVIVPLALLFSGT
                     FDNLSLLKEYTNRQDVFDAALVQHLMLLAGTVLPALAIGLPLGVWCYFSASRQGPVFT
                     VLNVIQTIPSVALFGLLIAPLAGLVKQFPWLAEFGVAGTGMTPALIALVLYALLPLVR
                     GVVAGLNQVPRDVLESARAMGMSSGQRFRHVQLPLALPVFLRSLRVVMVQTVGMAVAA
                     ALIGAGGFGALVFQGLLSSAIDLVLLGVIPVIALAVVIDALFDLWIAFLKGATDD"
     gene            complement(11643..12560)
                     /locus_tag="OQP62_001613"
     CDS             complement(11643..12560)
                     /locus_tag="OQP62_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS1721195.1"
                     /translation="MTISKLWVSSLALLATVSLPLQAASPVTVGSKIDTEGALLGNMI
                     LQVLESHGVKTVNKIQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAK
                     QGFEKVKKLDAEQNKLVWLTPAPANNTWTIAIRQDIAEKNKLSSLADLSRYLKEGGTF
                     KLAASAEFIERSDALPAFEKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMA
                     YGTDGPVAALGLQTLSDPKGVQPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTL
                     QQLNARIAVEGLDAKKVAADYLRQKGWVK"
     gene            complement(12742..15039)
                     /gene="bglX"
                     /locus_tag="OQP62_001614"
     CDS             complement(12742..15039)
                     /gene="bglX"
                     /locus_tag="OQP62_001614"
                     /EC_number="3.2.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucosidase BglX"
                     /protein_id="HCS1721196.1"
                     /translation="MKWLCSVGVAVSLAMQPALAENLFGNHPLTPEARDAFVTDLLKK
                     MTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVTRQDIRQMQDQVMALSRL
                     KIPLFFAYDVVHGQRTVFPISLGLASSFNLDAVRTVGRVSAYEAADDGLNMTWAPMVD
                     VSRDPRWGRASEGFGEDTYLTSIMGETMVKAMQGKSPADRYSVMTSVKHFAAYGAVEG
                     GKEYNTVDMSSQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRD
                     EWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKAGVDMSMADEYYSKYLPGLIKS
                     GKVTMAELDDATRHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVAR
                     ESVVLLKNRLETLPLKKSGTIAVVGPLADSQRDVMGSWSAAGVANQSVTVLAGIQNAV
                     GDGAKILYAKGANITNDKDIVDFLNLYEEAVKIDPRSPQAMIDEAVQAAKQADVVVAV
                     VGESQGMAHEASSRTNITIPQSQRDLITALKATGKPLVLVLMNGRPLALVKEDQQADA
                     ILETWFAGTEGGNAIADVLFGDYNPSGKLPISFPRSVGQIPVYYSHLNTGRPYNPEKP
                     NKYTSRYFDEANGPLYPFGYGLSYTTFTVSDVTLSSPTMQRDGKVTASVEVTNTGKRE
                     GETVIQMYLQDVTASMSRPVKQLKGFEKITLKPGERKTVSFPIDIEALKFWNQQMKYD
                     AEPGKFNVFIGVDSARVKQGSFELL"
     gene            15306..17036
                     /gene="dld"
                     /locus_tag="OQP62_001615"
     CDS             15306..17036
                     /gene="dld"
                     /locus_tag="OQP62_001615"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HCS1721197.1"
                     /translation="MSSITMTDNKTFLNELARLVGHSHLLTDPAKTARYRKGFRSGQG
                     DALAVVFPGSLLELWRVLNACVNADKIILMQAANTGLTEGSTPNGNDYDRDIVIISTQ
                     RLDKLHLLDNGQQVLAWPGTTLYALEKALKPLGREPHSVIGSSCIGASVIGGICNNSG
                     GSLVQRGPAYTEMSLFARIDEQGKLQLVNHLGIDLGHTPEQILSKLDDERIKDEDVRH
                     DGRHAHDHDYVTRVRDINADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFAAEKNQ
                     QVFYIGTNQPAVLTEIRRHILANFDNLPVAGEYMHRDIYDIAEQYGKDTFLMIDKLGT
                     DKMPFFFTLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHL
                     LLKMAGDGVAEAQRWLNEFFKSAEGGFFTCTPEEGSKAFLHRFAAAGAAIRYQAVHAD
                     EVEDILALDIALRRNDTDWFEHLPPEIDSQLVHKLYYGHFMCHVFHQDYIVKKGVDVH
                     ALKAQMLELLQARGAQYPAEHNVGHLYKAPETLTRFYRQNDPTNSMNPGIGKTSKRKF
                     WQENTPDETH"
     gene            complement(17095..18003)
                     /gene="pbpG"
                     /locus_tag="OQP62_001616"
     CDS             complement(17095..18003)
                     /gene="pbpG"
                     /locus_tag="OQP62_001616"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416638.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine endopeptidase"
                     /protein_id="HCS1721198.1"
                     /translation="MLAVPFAPQAVAKTAATTAASQPEIASGSAMIVDLNTNKVIYSN
                     HPDLVRPIASITKLMTAMVVLDARLPLDEILKVDISQTPEMKGVYSRVRLNSEISRKN
                     MLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTRFVEPTGLSIHNVS
                     TARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLVYRDNWNIQLTK
                     TGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTWIETGKVMPVPAAA
                     LSYKKQKAAQMAAASASAGAQTAQND"
     gene            complement(18208..18795)
                     /locus_tag="OQP62_001617"
     CDS             complement(18208..18795)
                     /locus_tag="OQP62_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014170891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YIP1 family protein"
                     /protein_id="HCS1721199.1"
                     /translation="MNHVWGLFSHPDREMQVIKSENETVSHHYTHHVLLMAAIPVVCA
                     FIGTTQIGWNFGDGNVLQLSLFTAFALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPS
                     LARCMVFAGYVATPLFLSGLVALYPLVWLCALVGAVALFYTGYLLYLGIPTFLNINRE
                     EGLSFSSSTLAIGVLVLEVLLAITVILWGYGYRLF"
     gene            18954..19523
                     /locus_tag="OQP62_001618"
     CDS             18954..19523
                     /locus_tag="OQP62_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001669449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1721200.1"
                     /translation="MDINTLITHYGYAALVIGSMAEGETVTLLGGVAAHQGLLKFPLV
                     AAAVALGGMMGDQLLYLLGRCYGGKILRRFPRYHTKIRRAQKMIQRHPYLFVIGTRFM
                     YGFRVVGPLLIGASRLPPKIFLPLNIVGALIWALLFTTLGYLGGEVIAPWLHDLDQHL
                     RHGVWLILAIVLVVGVRWWLKRRGKAEAR"
     gene            complement(19571..20332)
                     /locus_tag="OQP62_001619"
     CDS             complement(19571..20332)
                     /locus_tag="OQP62_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1721201.1"
                     /translation="MTKVAIVTASDSGIGKACALLLAQNGFDIGITWHSDERGAQETA
                     KKAAQFGVRAETIHLDLSQLPEGAQAIEHLIQRLGRVDVLVNNAGAMTKSAFIDMPFT
                     QWRQIFTVDVDGAFLCAQIAARHMIKQGEGGRIINITSVHEHTPLPQASAYTAAKHAL
                     GGLTKSMALELIEHHILVNAVAPGAIATPMNDMDDSDIEPGSEPSIPIARPGSTHEIA
                     SLVAWLCSEGASYTTGQSLIVDGGFMLVNPQFNAK"
     gene            complement(20398..21834)
                     /gene="mdtQ"
                     /locus_tag="OQP62_001620"
     CDS             complement(20398..21834)
                     /gene="mdtQ"
                     /locus_tag="OQP62_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug resistance outer membrane protein
                     MdtQ"
                     /protein_id="HCS1721202.1"
                     /translation="MNRNSFLAATASLPLFILLAGCAPMHDTRQSLTQQTPSSHVDSS
                     LPAALKNGWPDSQWWKAYHDAQLDALIDNAIQHSPDMQVAEQRIQLAEAQAKAVEAQD
                     GPQLDFSADIERQRMSAEGLMGPFAITDPAAGTTGPWYTNGTFGLTAGWDLDLWGKNR
                     AEVTARIGAVKAREAEQEQTRQLLASGVARLYWEWQTQAALKNVLMQIEHEQQNVVAV
                     NRELYQHGITSSVEGVETDIDASKTQQQLNDVNGKMKVIEARLSALTNTQSAALKLRQ
                     VSLPAVESQLPSQLGYSLLARRADLQAAHWYIESSLSSIDAAKAAFYPDINLMAFLQQ
                     DALHLSDLFRHSAQQYGITGGLTLPIFDSGRLNANLDIAKAQSNLSIANYNKAVVDAV
                     NDVARAASQVETLAQKNQHQQQIEHDAQRVVGLAQARFNAGIIAGSRVSEAKIPALRE
                     QCNGLLLQGQWLDASIQLTSALGGGYHS"
BASE COUNT         5216 a         6183 c         5581 g         4905 t
ORIGIN      
        1 tgtcatattc tctttggaat acgtcaggag gattacaccg cgcggaaggc gatttctccc
       61 ggaatcactt caccctgcca gtaaagctgt gccgcaacgc gatcggccag ttcgcgatag
      121 atcgcggtaa actcgctctc cggacggcta accaccgtcg gcgtaccgcg atcgagatct
      181 tcacgcagac taatatgcag cggcatctga cccagaagct gagtatggta tttttccgcc
      241 agcttctgcg cgccgcccgt gccgaagatc ggttcgtgat ggccgcagtt gctacaaata
      301 tgcatactca tattttccac aatgccgagc accggcactt ccaccttctc gaacatcacg
      361 ataccttttt tggcgtcgat tagcgcgata tcctgcggcg tagtcaccac caccgcgccg
      421 gtaacaggaa tgttctgcgc cagcgttagc tgaatatccc cggttcccgg cggcatatcc
      481 agtaccagat aatccagatc cggccacagc gtctcctgca acatctgcat cagcgcctta
      541 ctggccattg ggccgcgcca taccatcgcg ttatcgtcag tcaccagata gccgatcgag
      601 ttggtcgcca ggccgtgaga cataatcggc gccatatgcg taccgtctgg cgatgtcggg
      661 cgctgatctt ctgcgccaag catggttggg atcgacggac cgtaaatatc ggcatcgaga
      721 accccgacct ttgcgccttc agcctctaac gccagcgcca ggtttaccgc cgtggacgat
      781 ttacccaccc cgcctttacc ggagctcacg gcaatgatgt ttttcacgcc attaatgcca
      841 ggctgatttt tgacgcgttt cagcgtcgca atgttgtacg acagtttcca gtcgatcgct
      901 tttgcgcccg taatacgtaa cagatcggcg ctgcattgct cttttaatac ctcaaacgcg
      961 ctgttccaga cgaacggcat gaccagctca acgtgcagcg tatcatccat ccaggcgacg
     1021 tggtgcaacg ccttaagcgt ggtgaggtta tgcttcaggg ttgggtgctg aaaattcgcc
     1081 agcgtcccgg cgaccatcgc tcgcagggta tctggtgatt tggcctggga ttgttcgttc
     1141 atcccgactc cttttgtagt tctgaaaagt acgattgtaa ctttgtagtt tactccagcg
     1201 gtaacaatta ttcatttacg gataaatgcc cttatcgatt ggcgcagtaa ttaccatttt
     1261 ggtactatca aagccctttt ttacaacaga agaagtaata cccactatga ctcaagtcgc
     1321 gaagaaaatt ctggtaacgt gcgcgctgcc gtacgccaac ggctctatcc acctcggcca
     1381 tatgctggag cacatccagg ctgatgtctg ggtccgttac cagcgaatgc gcggccatga
     1441 ggttaacttc atctgtgccg atgacgctca tggcacgccg atcatgctga aagcgcagca
     1501 gcttggtatt acaccggagc aaatgatcgg tgaaatgagc caggagcacc agaccgattt
     1561 cgccggtttt aatattagct acgacaacta ccactcaacg cacagcgacg agaatcgcga
     1621 gctgtccgag ctgatttata cgcgcctgaa agagaacggt tttattaaga accgcaccat
     1681 ctctcaactc tacgatccgg aaaaaggcat gttcctgccg gatcgatttg tgaaaggcac
     1741 ctgcccgaaa tgtaaatccg cggaccagta cggcgataac tgtgaagtct gcggcgcaac
     1801 ttacagcccg accgaactta tcgagccgaa atccgtggtg tccggcgcga cgccggtaat
     1861 gcgtgactcc gagcactttt tctttgacct gccgtcattc agcgaaatgt tgcaggcgtg
     1921 gacccgcagc ggcgcgctgc aggagcaggt ggcgaacaaa atgcaggagt ggtttgaatc
     1981 cggcctccag cagtgggaca tttcccgcga cgcgccgtat tttggtttcg aaatcccgaa
     2041 cgcgccgggc aaatatttct acgtctggct ggacgcgccg attggctata tgggctcctt
     2101 caaaaatctg tgcgataagc gcggtgacac gaccagtttt gatgagtact ggaaaaaaga
     2161 ctccgacgcc gagctgtatc actttatcgg caaagacatc gtctatttcc acagcctgtt
     2221 ctggcctgcc atgctggaag gcagccactt ccgtaagccg accaacctgt tcgttcacgg
     2281 ttacgtgacg gtgaacggcg cgaagatgtc taagtctcgc ggcaccttta ttaaggccag
     2341 cacctggctg aaacactttg acgccgacag cctgcgctac tactacaccg cgaagctttc
     2401 ttcacgcatt gatgacatcg acctgaacct ggaagacttt gtccagcgcg tcaatgccga
     2461 tatcgtcaat aaagtagtca acctggcatc ccgtaacgcc ggttttatca ataagcgttt
     2521 cgacggcgtg ctggcggctg aactggccga tccgcaattg tacaaaacct ttactgacgc
     2581 cgctgcggtg attggcgaag catgggaaag ccgtgaattc ggtaaagcta tccgtgagat
     2641 tatggcgctg gccgacgtcg ctaaccgtta tgttgacgag caagcgccgt gggtggtggc
     2701 taaacaggaa ggccgcgacg ctgacctgca ggccatttgc tcgatgggca tcaacctgtt
     2761 ccgcgtgctg atgacgtatc tgaaaccggt actgccgacg ctttctgaac gcgttgaagc
     2821 cttcctgaac agcgaactga actgggatgc catcgaacag ccgctgctca gtcacaaggt
     2881 caacaccttt aaggcgctct acaatcgcat cgacatgaag caagttgaag cgctggttga
     2941 agcgtctaaa gaagaggtga aagccgcagc cgcgccggtt accggcccgt tagccgactt
     3001 cccgattcag gaaaccatca cctttgacga tttcgccaaa attgacctgc gcgtagcatt
     3061 gattgaaaac gctgagttcg tagatggttc tgacaaattg ctgcgtctga cgctggatct
     3121 gggcggcgag aagcgtaacg tcttctccgg cattcgttcc gcctacccgg acccgcaggc
     3181 gctgatcggc cgccagacgg taatggtcgc caacctcgcg ccgcgcaaaa tgcgctttgg
     3241 cgtctccgag ggaatggtga tggccgcagg acctggcggg aaagatatct tcctgttaag
     3301 ccctgatgac ggcgcgaagc ctggccaaca ggtgaaataa gcaacaagcc ggagcatgct
     3361 ccggcttttt taaccgctta atcctgactg gcatatcacc ccatccgcgt gttttaactt
     3421 tttccttaat aagcaatagc gttaagactc catatccgga ctgctaaata acggctaaaa
     3481 gtcatattct atctctccct gatacattgc tattactggg ttaaattaat tcattgaaat
     3541 tattttaaaa acccaatcat tatataaaat ggagttttag atgaaaattt ctggcaagtt
     3601 attgtccgcg gctttggctt ccgtactggt gttctctctt gctggctgtg gcgataaaga
     3661 agaatcaaag acctttaacg caaacctggc ggggacagaa atttcaatta cttacaccta
     3721 taaaggtgac aaaatcatta agcagacgtc tgaaagtaaa atcagctatg ccactgtagg
     3781 cgctaaaacg aaagaagatg ccgccaaaat tctcgatccg ctgagcgcga aatataaaaa
     3841 tatcgccgga gtggaagaaa aattaaccta tgaagatacc tatgcccagg aaaacgtctc
     3901 tgtggatatg gaaaaagtgg actttaaagc gttacagcaa atctcaggga cgatggtgtc
     3961 cggcgatacc agcaaaggta tcagcatgaa acaaacccag acgctgctgg aagctgctgg
     4021 ttttaaagaa gcgaaataac tggcaggcat aatgtattgc atcgactggt aaagtcgctc
     4081 agggcgctgc ttcggcagcg tcttttcttt atgaattccg aaaaaagaca gcctcgctgt
     4141 aagtcccctc gccaaagcct ataatccctg aattcctggc cacaccaata cttaacgaca
     4201 aggaattgtt atgcaggttc tacgtcttat ggcactgcca ctattcgcgc tctctctatc
     4261 ggttagcata actggctgcg atcagaaaaa cgatactctc cagggaaagc aaaataacat
     4321 gacagcgttt atcaagaaga tagccgctag caaagagtca gaggaaacac aacgctatgt
     4381 aggtaatctc aacggtattg aaatcaagtt aacctattac tacaaagggg atatcgtttt
     4441 acgtcaaata tctgaacata aactacttta taagaccctg aaagccaata ataaagaaga
     4501 agcacaaaaa atgctgagtc aagtcggcga agcttatcag ggtatgccgg gtttgactga
     4561 acgaatcgac tattatgata gctatgctac ggaatatgtg gatattgatt ttacccaggc
     4621 aaaaataagc gacctctgta aattgccagg atcatcaatt gacaactgtt ccgcgtacta
     4681 tctgtcaatg attcgctcgc agaaactgtt ggaagagagc gggtatcata gaatcaatta
     4741 gtataataat gcgttttccc ggtcagacag gacgctgccg ggaacaatac cgcagaatta
     4801 cttcgccgcg tgttcacggg ccgccagacc gcgcagaaaa taacgcataa actgatcgcc
     4861 gcattcgcgg aagttcttat ggtccggcgc gcgcatcatc gcggtgatct ctggcattga
     4921 gacacgaaac aactgaccgg taagtatcgc caggatatca tctgttttta gcgaaaaggc
     4981 aatacgcagc tttttcagca caatattgtt gttgatacga cgttccgccg tcaatgcagg
     5041 cgccgcctca tctttgccgc gtttttcata aatgaggcca ttgagaaatg aggacaacac
     5101 gatatccggg caacgctgaa acccctcttc ctcttctttg cgcaaccaga ttgctatctg
     5161 ctccggcgta gcatcaacgt tacccagcgc caggatacgc gccagatcgg tattattagc
     5221 ttttaaaatg tagcgcacgc tacgcagaat atcgttactc agcatgaggc cttcggtcgt
     5281 ttctatggca aaacgatatt ctaacagtct tttacaggcc aatcgcctct tttaaacttt
     5341 tcagatagcg acggcttacc ggcaccgtca ggccgttgcg taaaatcagc tctgcctgcc
     5401 cattatcctc cagccgaatt tcctgcaaat gggccatatt caccagaaac tgacgatgac
     5461 aacgcagtag cggcgtccgg ctttccagcg tgcgcagcgt cagctcggta aacccctctt
     5521 tcccttcact gctggtcaca taaacgccgc tcatacggct actgacaaag gcgacatcat
     5581 ccatttgcaa caaatagatc cggctgtgtc cggtacaggg aatgaattta agcgcctgct
     5641 ggttttccgg caacaacgaa acatcctgtt tactgcgctc ctgacgcaga cgatgtaacg
     5701 ttttttccag ccgtttctcc tctatcggct tgagcagata atcaaaagcg tgttcttcaa
     5761 aggctttgat ggcgtattcg tcaaacgcgg ttaaaaaaac gatatacggg cggtgttccg
     5821 gatcaagcat tcctactatc tccagtccac tgatacgcgg catctgaata tccagaaaca
     5881 gcacatcagg tcgcaactta tgtaccgcgc caatcgcttc taccgcgttc gcgcactctc
     5941 ccacaatctc aatgtcatcc tgcccctgga gcaaaatccg cagattttcc cgcgctaacg
     6001 gctcatcatc cacaatcagc actttaatca tgcgtcctcc tccagtggaa gtcgtaatgt
     6061 aattcgggta aaacagtccg gctcgcaggc cacgctaata ccataatcat cgccaaagtg
     6121 ttcgcgcaga cgtttatcca ccagactcat ccccagcccg ctactgccgg cggaaggctg
     6181 atacagtccc gcattatctt caatatctaa catcaaatgc tgcccttcgc gccgggcgcg
     6241 aatagcgacg ttgccggtat caagcagttg cgacgtgcca tgtttaatgg cgttctcaac
     6301 aatcggctgt aatgtaaacg caggcaattt ctgacgtgaa agcgtcgatg gaacatcaag
     6361 ctgtacctgc agacgcgact gaaaacgcgc tttttcaatt tgcaggtaag cgttcacgtg
     6421 ttcaatttca tccgccagcg tgacgatttc cgacgggcgt tttaaatttt tgcgaaaaaa
     6481 ggtcgacaag tactgcacca gttggctggc ctgttcgctg tcgcggcgaa tcaccgcttt
     6541 aatggtattg agcgcattaa acagaaaatg cggattcacc tgcgcgtgca acagcttgat
     6601 ctctgactgc gtcagcaacg ccttctgccg ttcatactgc ccggccagga tctgcgcgga
     6661 taaaagctgc gcaataccct cccccagagt acggttaatt gagctgaaca gtcggttttt
     6721 cgcttcgtac aatttaatgg tgcccatgac tcgctgattt tcgccacgca gcgggatcac
     6781 cagcgtcgag ccgagtttac actgcgggtg tagcgaacag cgatacggca cttcgttgcc
     6841 atcggcataa accacctctc cggtttcaat tgctttcagc gtataacctg atgaaatggg
     6901 tttgcccggt agatggtgat cgtcgccaat accagtaaaa gccagcagtt tttcgcgatc
     6961 ggtgatggcg acggcgccaa tatccagctc ctgatataac acctgcgcca ccttcatact
     7021 gttcacttcg ttaaatccct gacgcagaat cccctccgtt gacgcggcga ccttcagcgc
     7081 ggtaacagaa aatgccgaag tatatttttc gaacatggcg cgcttatcga gcaaaatacg
     7141 cataaacagc gcggcgccaa cggtattcgt caccatcatc ggcgcggcaa tattactgac
     7201 cagatgcagg gcatcgtcaa acggcctggc tatcagtaaa atgatcagca tctgcaccag
     7261 ttcggcaaca cacgtaattg ctcccgccgt cagcgggcta aacactttgt ccgggcgtcc
     7321 gcgacgtatg agaacgctgt gtaccaaccc gcccagcagc ccttcgacga tggtggaaat
     7381 catacagctc agcgccgtca tgccgcccat agaataccga tgtaacccac cggtcagacc
     7441 gaccagcccg ccgacgaccg gcccgccgag taggccgccc atcaccgcgc caatcgcgcg
     7501 ggtattggca atcgaatctt cgatatgtag cccaaaataa gtgcccataa tgcagaagat
     7561 agaaaacgtg acataacaca gaagcttgtg cggcagacga accgtgacct gcataagcgg
     7621 gatgaacagg cgcgttttac tcattagcca cgcaatgacc agaaacacgc acatctgctg
     7681 aagcagcagc aacaccagat taaactcgta catacccgca aaccacactt caattaaaag
     7741 cgcgtaacat acattgagta cgattaactt tctttgaact gttgcataaa aatatgaatt
     7801 cgtgaatacg atcacttaaa cgccgcgccg caacccgcta cttcgcgttt taatgcataa
     7861 aaaacaggca aaacttcctg gttcctaaaa gagcgtctaa agttaaaccg ggacctcgcg
     7921 agcaagggtg aaacgatggc gctttacaca attggtgaag tggctttgct ttgtgatatc
     7981 aatcctgtca cgttgcgcgc gtggcagaga cgttatggac ttttaaaacc acagcgaacg
     8041 gatggcggtc atcgtctgtt taacgatgcc gatatcgaca gaatccgcga aatcaagcgc
     8101 tggatagata acggcgtcca ggtcagcaaa gtcaaagtgc tgctcagtag cgacagtagc
     8161 gaacaaccta acggctggcg cgaacagcag gagatcctgc tgcactacct gcaaagcagt
     8221 aatctgcaca gtttacggtt atgggtcaaa gaacgcggtc aggattatcc tgcccaaaca
     8281 ttgaccacta acctgttcgt cccactgcgg cgacgattac agtgccaaca acccgccctt
     8341 caggcgctgc tcggcattct tgacggtatc ctgatcaact atattgcgct ctgcctggcg
     8401 tctgcgcgta agaaacaggg aaaagatgcg ttggtgatcg gctggaatat ccatgatacc
     8461 acccgcctgt ggctggaagg ttgggtcgcc agccaacagg gatggcgaat cgacgtgttg
     8521 gcgcattcgc ttagccagtt ccgcccggaa ctttttgacg gcaagacgtt actggtatgg
     8581 tgcggagaac accagacgct ggcgcagcag cagcaactcc tggcatggcg cgcccaggga
     8641 cacgacattc atccccttgg cgtttaaaca gcagctaaca aattcgcttt aatgtatact
     8701 ccttttatta acataaggag tacataatgc gcgtagcgaa aatcggggtg atcgcccttt
     8761 tcctgctgat ggctattggc ggtatcggcg gcgtgatgct ggcaggttac agttttattt
     8821 tgcgtgccgg gtaagcgcgc gcgtcagcct ttcaaacagg cgatcgataa tgatcgccgc
     8881 cagcgccacc agcagcgccc cctggataac ataggccgta ttaaagccgc taagcccgat
     8941 aatgatcggc gtgcctaacg tactggcccc caccgttgaa gcgatggtcg ccgtaccaat
     9001 attgataatc accgaggttc ggatgcccgc cagaatcacc ggcgcggcca gcggcagctc
     9061 aacctgatac aactgttggc gacggctcat tcccataccg ctggcaacgc tcatcacgct
     9121 ggcaggcacc gcgcccagcc cggccagggt cgcctgcagg atgggcaaca ccccatacag
     9181 gatcaaggcg ataatggccg gttgctgacc aaaacccatg acgggtaccg cgatcgccag
     9241 taccgcgacc ggcggaaagg tctgcccgac ggcggcgata gtctccacta ggggacgaaa
     9301 ctctttccca ctttctcgcg tgaccgcaat ccctgcgccg acgcccacca cgacggcaaa
     9361 caaacttgag atgcccacca accagaaatg ggcgagcgcg agggcggcaa aactctcctg
     9421 ttggtagacc gggcgcggta aatcgggaaa cagcgcggcg aagaacggct ggctataagg
     9481 caatccaaac agcagaagca agaacagaac aataagccag agaagcggat cacacagtcg
     9541 tttcacgggg ggacgtctcc gaaagcagat cgcggaaatg gagcgtaccg cagggctcgc
     9601 cctgctgatt cgccaccggc aggacgtcgc accgacgggc gacaaacatc gatagcgcat
     9661 cgcgtagcgt catctcttcc accagcgcgt cgccgctgag ctgttcatgc cgacgtacat
     9721 aatcgcctac gctacgtaac gaaagcagcc ttacgcccag ctcgctgcgg ccaaaaaatg
     9781 cctgcacgaa atcattttcc ggcgaggtca gcatagaaag tggcgatccc tgttggataa
     9841 cgtggccccc gtccatcagc accagatggt cggcgaggcg tagcgcctcg tcgatgtcgt
     9901 gcgtcaccag tacgatggtg cgccccagta gctgatgaat gcgggtcatc tcctgctgca
     9961 atgcgccgcg cgttaccgga tcaagcgcgc cgaaaggctc gtccatcagc aatacctgcg
    10021 gatcggcagc cagcgcccgc gcaacgccga cccgctgctg ttgcccgccg gaaagctgat
    10081 gcggatagcg atcgcgcagc gcgctttcca gacccaataa tgccatcagt tcatcaatac
    10141 gatcgttaat ccgcgcacgc gaccactttt gtagttgcgg tacggtggcg atattttgcg
    10201 ccaccgtcca gtggggaaaa aggccgatag actgaatggc atagcccatg cgacggcgca
    10261 gttcaagcac cggcaggctg cggatctctt caccggcaaa acggatcgtt ccgctatcat
    10321 gctctaccag ccggttaatc atcttcagag tggtcgattt tcccgaaccg gaggtgccaa
    10381 ttaacaccga aaagctgcct tcgctaaagt gcaaattgag gtcgctaaca gcctgttgat
    10441 cgccgaaggt tttactgaca tggttaaatt caatcatcgg ttgctccctt caaaaacgcg
    10501 atccataaat caaacagcgc gtcgatcact accgccagcg caatcaccgg aatgacgccc
    10561 aacaggacta aatcaatggc gctgctcaat agcccctgaa acaccagcgc gccgaaacct
    10621 cccgcgccaa tcagcgcggc ggcgacggcc attcccactg tctggaccat tactacccgc
    10681 aggctacgta aaaagaccgg cagcgccagc ggcagttgca catgcctgaa gcgctggccg
    10741 ctactcattc ccattgctct tgcgctctcc agcacatcgc gtggcacctg attgagcccg
    10801 gcgaccacgc cgcgcaccag cggcaataac gcatagagca ccagcgctat cagcgcaggc
    10861 gtcatgccgg ttcccgcgac gccgaattcg gcaagccacg gaaactgttt caccagcccg
    10921 gccaacggcg cgatcagcag gccaaacagc gcgacggaag gaatagtctg gatcacattc
    10981 agtacggtaa acaccggccc ctggcgtgag gcggaaaaat aacaccagac gcccaacggt
    11041 agtccgatcg ccagcgccgg cagcaccgtg cccgccagta acattaaatg ttgcaccagc
    11101 gcggcatcga aaacatcctg gcggttggta tactctttca gaagcgagag gttgtcgaac
    11161 gtgcctgaaa acagcagcgc cagcgggaca atgacaattt gcgcgtgcag caaccagcgc
    11221 cacagcggcc caacggtaat acggcggatc gcatcgctac aggccagcag catcagaccg
    11281 aggcccagcc acaatccact tcccagactg gtacgcgcca gcggactgcc ctcctgcgcc
    11341 aactgggtcg ccgccctgcc gactccccac agcatgacaa taaaaagcgt ctgcgccatc
    11401 atcagcgtca gtacgctacc gcgtttaccg ggcacaaagc acagcgtaaa cagcgcgcat
    11461 cccgcgccag tcagcatcca gatggtcgcc ggccagatct cccataactg gcgcccctcg
    11521 ccgctcacca gacgattcgg ggcgtaatta atgaaaggca gcgcgacagc aagcagggcc
    11581 agaacaacca acagcaacag cacacgatta accgtaattt ttttggcagc gtcactcaca
    11641 gattacttca cccacccttt ttgtcggagg taatctgcgg cgactttttt cgcatccagc
    11701 ccttctacgg cgattctggc gttcaactgt tgcagcgttt tctcatcaag gctggcgaaa
    11761 acgggctgca gccaatcggc tatctgcgga taggcctgta acaccgattc acgcactacc
    11821 ggcgcggggg catagatagg ctggacgcct ttcgggtcgc tcagggtttg cagacccagc
    11881 gcggcgaccg ggccgtcggt gccatacgcc atcgcggcgt taacaccgga tgtttgttgc
    11941 gcggcggctt tgatcgtgac cgccgtatcg ccgcccgcca gcgacaagag ctggttctga
    12001 ttcaaggtaa aatcataggc tttttcaaat gccggcagcg catccgaccg ttcgataaat
    12061 tccgcagacg ccgccagttt aaaagtgccg ccctctttca gataacggct gagatcggca
    12121 agcgaggaga gtttattttt ttccgcgatg tcctgacgta tcgcgatggt ccaggtgttg
    12181 ttggccggcg caggcgtcaa ccagaccagc ttattctgct ccgcatccag ttttttgact
    12241 ttctcaaagc cttgctttgc atttttccat gccggatcgt tttcatcttt aaaaaagaac
    12301 gccccgttac cggtgtattc cggatagata tccagctctc cggcggtaat cgcgccacga
    12361 acgactggcg tcgtcccgag ctgaatttta ttgaccgttt taacgccgtg gctttccagt
    12421 acctgcaaaa tcatgttgcc gagcagtgcg ccttcggtat caatctttga cccgaccgtc
    12481 acgggcgatg ccgcctgtag aggtaaactc accgtcgcca gcaacgccag cgaacttacc
    12541 catagctttg agatcgtcat gatgctttcc tcatcctttt acggcctttt tcagaaactt
    12601 gagaaaaaag catagttgaa aagtctgcgt ttaacctggg attttccggc agtttaagtg
    12661 acgtggcagg caataaaagg gggggacaga aaaagtcatt gccagacagg gcgctgctat
    12721 cgcgccctgt tgacggcagg cttacagtag ctcgaacgat ccttgtttaa cgcgagcgga
    12781 atccacgccg ataaagacgt tgaacttgcc gggttccgcg tcatatttca tctgctgatt
    12841 ccagaacttc aacgcctcga tatcaatcgg gaaactcacg gttttacgtt cgccgggctt
    12901 gagggtgatt ttttcaaagc cttttaattg cttcaccggg cggctcatcg acgccgtgac
    12961 atcctgtaag tacatctgga tgaccgtttc cccttcgcgt ttaccggtat tcgtgacctc
    13021 tacgctggcc gtgactttgc cgtcgcgttg cattgtcggt gaggagagcg tgacgtcaga
    13081 caccgtaaat gtggtgtagc tcagaccgta accaaacgga tagagcgggc cattcgcttc
    13141 gtcaaaatag cgtgaggtgt atttgtttgg cttttcagga ttatacgggc gtcccgtatt
    13201 gagatggcta taatagaccg gaatttgtcc caccgaacgc gggaaggaga tcggcagttt
    13261 gcctgacggg ttgtaatcgc caaacagcac atcggcaatg gcgttgccgc cttccgtccc
    13321 ggcaaaccag gtctccagaa tcgcatcggc ttgttgatct tcttttacca gcgccagcgg
    13381 tctgccgttc attaatacca gtaccagcgg cttaccggtg gctttcagag cggtgattaa
    13441 gtcgcgctga ctctgcggaa tggtgatatt ggtacgactg gaggcttcat gcgccatccc
    13501 ctgcgactcg cctaccactg cgaccactac atcggcctgt ttcgccgcct gcaccgcctc
    13561 atcaatcatc gcctgcggtg agcgcggatc gattttcacc gcctcttcat acaggtttaa
    13621 gaaatcgacg atatctttat cgttagtgat attcgcccct ttggcataga ggatcttcgc
    13681 cccgtcaccg acggcatttt gaatacccgc cagcaccgtc actgactgat tcgcgacccc
    13741 agcagcagac cagcttccca ttacatcacg ttgactgtcg gccagcggcc caacaacggc
    13801 aatggtgccc gattttttca gcggcagcgt ttccagccgg tttttcagca gaaccacact
    13861 ttcccgcgcc acttcccgtg cctctttacg atgcaggcgg ctttcggcat tggtgtccac
    13921 cgggtcgctc tctttcggtc ccagatggct ataggggtcg ttaaacaatc ccatgtcata
    13981 ttttacgttg agcacatggc gcgtcgcgtc gtccagttcc gccatcgtca ctttgcccga
    14041 cttaatcaga cccggcagat atttgctgta atactcatcc gccatgctca tatccacccc
    14101 tgcctttagc gccacgcgca ccgcatcttc cgggtcggcc gcggtaccgt gtttaatcag
    14161 ttctttaata gcgccgtggt cggaaacggt aattccctta aagccccact catcgcgcag
    14221 gacatctttc aatagccagg aatctgacgt cgcaggcgtg ccgttcagcg agttcagcgc
    14281 caccatcacc gcgccgctcc ccgcatccag ccccgctttg tacggcggca tgtagtcatt
    14341 aaacagacgc tgggaactca tatccacggt gttgtattct ttaccgcctt caacggcgcc
    14401 ataggcggca aaatgtttca cgctggtcat caccgaatag cggtccgccg ggcttttgcc
    14461 ctgcatcgct ttcaccatgg tttcgcccat gatggaggtt aaatatgtat cttcgccaaa
    14521 gccttcggag gcgcgtcccc aacgcggatc gcgggagaca tccaccatcg gcgcccaagt
    14581 catattcaga ccgtcgtccg ccgcttcata cgccgatacg cgtcctacgg ttcttaccgc
    14641 atccagatta aaagaagaag ccagaccgag gcttatcggg aagacggttc gctggccgtg
    14701 taccacgtca taagcaaaaa agagaggaat tttcaggcgg ctcaatgcca tcacctgatc
    14761 ctgcatttga cggatatcct ggcgggtgac ggtattgaaa atcgccccta cctgcccgtc
    14821 tttgatcatc tcgcgaatcg cttctttcgg gttatcaggg ccgacgctaa tcagacgtaa
    14881 ctgaccaatt ttttcatcga cagtcatttt cttgagtaaa tccgtgacga acgcgtcgcg
    14941 cgcttcgggc gtcagcgggt gattgccaaa caggttttcc gccaatgctg gctgcatcgc
    15001 cagactcaca gcaacaccta ctgaacataa ccatttcatg ttgagtctct ctttatcttt
    15061 atcccgacga ggcggtaaaa acagaataaa aaccgcagtt tgccataagc ctaaacgcga
    15121 gaggagaaga aagcgaaggt tattctccta attttccgca cagtcgaata cgcaaccgcc
    15181 agcaaatggt atcaaggcgg caaatgaata ccaccaacac agaaacaatt tgaatgagaa
    15241 agcgtattgt catacaaagc gctatgctta acgctgatat tttgtcccac cacaaggagt
    15301 ggagaatgtc ttccataaca atgactgata ataaaacgtt cctgaatgag ctggcccgcc
    15361 tggtaggcca ttctcacctg ctgacagacc ccgccaaaac cgcccgctat cgcaagggtt
    15421 tccgttccgg tcagggcgac gcgctggccg ttgttttccc gggttcatta ctggaactgt
    15481 ggcgtgtgct caacgcctgc gttaacgctg acaaaattat tctgatgcag gccgccaaca
    15541 ccggtctgac ggaaggctcc acgccgaacg gcaacgacta cgatcgcgat attgtgatta
    15601 tcagcaccca gcggctggat aagctgcact tactggataa cggccaacag gttctggcct
    15661 ggcccggtac gacgctctat gcgctggaaa aagcgcttaa accgctgggc cgtgaaccgc
    15721 actcggtgat tggttcgtcg tgtatcggcg cgtcggtcat cggcggcatc tgtaataact
    15781 ccggcggctc gctggtgcag cgcggcccgg cctataccga gatgtcgctc tttgcccgta
    15841 ttgacgagca aggcaaactg caactggtca atcatctggg tatcgatctt gggcatacgc
    15901 cggagcagat cctgagcaag ctggatgatg aacggattaa agatgaggat gtgcgtcacg
    15961 atggtcgtca tgcgcacgat cacgactacg tgacgcgggt acgagatatc aacgccgata
    16021 cgcccgcccg ctataacgcc gacccggacc gtttgtttga atcttccggc tgcgccggaa
    16081 aactggcggt ttttgccgtt cgccttgata cctttgcagc ggaaaaaaat cagcaggttt
    16141 tttatatcgg caccaatcag cccgcggtac tgactgaaat ccgtcggcat attctggcga
    16201 acttcgacaa tctgccagtg gcgggagaat atatgcatcg cgatatctac gatattgcgg
    16261 agcagtacgg taaagatacc tttctgatga tcgataaact cggcaccgac aagatgccat
    16321 tctttttcac gctaaaaggc cgaaccgatg cgatgctgga aaaagtaaaa tttttccgac
    16381 cgcatttcac cgaccgcgcg atgcagaaat tcggccatct gtttcccagc catctgccgc
    16441 cgcgaatgaa aaactggcgc gataaatatg agcatcatct gctgttaaaa atggcgggag
    16501 acggcgtcgc agaagcgcaa cgctggctga atgaattttt taaatccgct gagggcggtt
    16561 tcttcacctg tacgccggaa gaaggcagca aagccttcct gcaccgcttc gccgctgctg
    16621 gcgcagcgat tcgttatcag gccgtacacg ctgatgaagt ggaagatatt ctggcgctgg
    16681 atatcgccct gcgccgcaac gataccgact ggttcgagca tctgccgccg gaaatcgaca
    16741 gccaactggt acataaactc tattacggtc actttatgtg ccacgttttt catcaggact
    16801 atatcgtgaa gaaaggcgtc gacgtccatg cgctgaaagc gcaaatgctg gagctgttgc
    16861 aggcgcgcgg ggcacaatac ccggcggagc acaacgttgg acatctgtat aaagcgccgg
    16921 aaacgctgac gcgtttttat cggcaaaatg acccaaccaa cagtatgaac cccggtatcg
    16981 gcaaaacgag taagcggaaa ttctggcagg aaaatacgcc cgacgaaacg cattaacacg
    17041 gtgtggttta ccgtgaatgc ccggcggcgc gatgcctgcc gggcctgcgg cgacttaatc
    17101 gttctgtgcg gtttgcgctc cggcgctggc gctggctgcc gccatttgcg cggctttttg
    17161 ctttttatag ctcagcgcgg cagccggaac gggcatgact ttaccggttt caatccatgt
    17221 acgcaggcga ctggcgtccg caaagtgggt atatttgccg aacgcgtcca tgaccaccag
    17281 cgcgaccggt ttgttattga tcacggtacg catcaccagg caatgccccg ccgcattggt
    17341 aaagccggtt ttcgttaact ggatattcca gttatcacgg tagaccaaat ggttggtatt
    17401 gcgaaacggc agcgtatacg ccggatgcga gaatgtcgcc atatcttcgc gcgtggtgct
    17461 tagctggcca atcagcgggt attgcttcgt ggcaatcagc aattttgtta aatcccgcgc
    17521 ggtcgagacg ttatgaatcg acagccccgt cggctcaaca aagcgggtat gcgtcatgcc
    17581 cagcgctttc gccttcgcat tcatcgcttt aataaatgcg ttataaccgc cgggataata
    17641 gtgcgccagg cttgccgccg cacggttttc ggatgacatc aacgccagca gcaacatatt
    17701 tttgcggcta atttcgctgt tcaggcgcac gcgggagtaa acccctttca tttccggcgt
    17761 ctggctgata tcgaccttca gtatttcatc cagcggcaat cgcgcgtcga gcacgaccat
    17821 cgctgtcatt aatttggtta tcgaggcaat cggacgcacc agatccgggt ggttcgaata
    17881 gatcacttta ttggtgttga gatcaacaat cattgcgcta ccggaggcaa tctcaggttg
    17941 agacgccgcg gttgtcgctg ccgttttcgc cacagcctgc ggggcaaaag gaacggccaa
    18001 catcagagca aggctcagga atgaagctca gaatttcagc atgatgagat ttctgataat
    18061 gattcacgcg cgtcgtaacg cacaccgcct gagctaagat tatactcaag ctagcagtgg
    18121 catcatagcg gcacgccagc gttgccgcta cagaagaatc gtcagcaaat gctgcattgc
    18181 tggcttttgc gccagccctt tttcgcatca gaacaggcgg tagccatatc cccacaggat
    18241 cacggtgatc gccagcagca cctccaggac cagtacgccg atagcgagcg tcgaactgga
    18301 gaagcttaat ccctcctctc tattaatgtt aaggaaagtc ggaataccca aatacagcaa
    18361 atagccggtg taaaaaagcg cgacagcgcc gaccaaagcg catagccata ccaggggata
    18421 gagcgccacc agaccactta aaaacagcgg cgtcgcgaca tagccggcaa aaaccataca
    18481 gcgcgcaagc gatggccgtt gcggatagtt tcgcgccatc caccagatga cgcgtcccat
    18541 caccgcgacg cccgccagca tcacgccgta gaacaagacc gccagcgcaa aagcggtaaa
    18601 cagcgagagt tgtaacacgt tgccgtcgcc aaaattccag ccgatttgcg tcgtgccgat
    18661 aaaggcgcag acgacgggaa tcgccgccat cagcaaaaca tggtgcgtat agtgatgcga
    18721 aacggtttcg ttttcgcttt tgatcacctg catttcccga tcgggatggg aaaaaagccc
    18781 ccatacatgg ttcatactgc ccccttctgc tgcctcagat gccagtatgt tcaagtataa
    18841 ttcagtttct ggttatttta tgagcaatgg caaaatagtc tccggcaaaa cgtcggcttt
    18901 gccgcgcacg cctcttgcca gggtgtatgc ttaatgccgg aggtggttta cgcatggata
    18961 tcaacacgct tattacgcat tatggctatg cggcgctggt tatcggcagt atggccgaag
    19021 gtgaaaccgt taccctgttg gggggcgtcg cggcgcatca gggattactc aagtttccgc
    19081 tggtggcggc ggccgtcgcg ctgggaggga tgatgggcga tcagctactt tacctgttag
    19141 gacgatgcta tggcgggaag atcctgcgtc gtttcccgcg ttatcatacg aagattcgtc
    19201 gcgcgcagaa aatgatccaa cgccatccgt atctgtttgt gatcggcacg cgttttatgt
    19261 atggcttccg ggtggttggc ccgctgctga ttggcgccag ccgcctgccg cctaaaattt
    19321 ttctgccgct gaatattgta ggcgcgctga tctgggcgct gctgtttacc acgctgggat
    19381 atcttggcgg cgaggtgatc gcgccatggc tgcacgacct cgatcagcat ctcaggcacg
    19441 gagtctggct gattctggcc atcgtcctgg tggtgggcgt gcgctggtgg ctgaaaagac
    19501 gcggcaaagc ggaggcccgt taaacccgat ggtatccgga tggcataacg ccgccatccg
    19561 gccccggcgt ttattttgcg ttgaattgcg gattcaccag cataaatccg ccgtcgacaa
    19621 tcagcgactg accggtggta tagcttgcgc cttccgaaca cagccaggcg acgaggctgg
    19681 ctatttcatg cgtagaaccc ggtcgggcga tagggatcga gggttccgat cccggctcaa
    19741 tgtcgctgtc atccatatca ttcatcggcg tggcgatagc gcctggcgcg acggcgttga
    19801 ccaaaatatg atgctcaatc agttccagcg ccatggattt agtcaatccc cccaacgcat
    19861 gtttcgccgc ggtataggcg ctggcttgcg gaagcggcgt atgctcatgg acggaggtga
    19921 tgttgataat gcgccctccc tctccttgtt taatcatatg ccgggcggcg atctgcgcgc
    19981 agagaaacgc gccatcgaca tccacggtaa aaatttgccg ccactgcgta aacggcatat
    20041 caataaacgc ggatttggtc atcgccccgg cattattgac cagcacgtca acgcgcccca
    20101 ggcgctggat aagatgttca atggcctgcg cgccctcggg taactggctc aggtcaagat
    20161 gaatggtctc tgcccgcaca ccaaactgcg ccgctttttt cgccgtctcc tgcgcgccgc
    20221 gttcatcgga atgccaggtg ataccaatat caaaaccgtt ttgtgctaat aacaacgcac
    20281 acgctttgcc aattcccgaa tctgatgccg ttacaattgc gactttggtc atattcctct
    20341 ccggatgaat catacacagc ctaagtatag gaaccctgtc tgaatcatct ggaaaaatca
    20401 ggaatgataa ccgccgccca gcgcgctggt aagctgaata gaggcatcca gccactggcc
    20461 ctgcaacagc aagccgttac actgctcgcg cagtgccggg attttggcct cgctcacgcg
    20521 ggaacccgca ataatgccgg cattaaagcg cgcttgcgcc agaccgacca cacgctgcgc
    20581 gtcatgctca atctgctgct gatgctgatt tttctgcgcc agcgtctcta cctgactggc
    20641 ggcgcgcgcc acatcattaa ccgcatctac caccgctttg ttgtagttgg cgatagaaag
    20701 gttgctttgc gctttggcga tatcgaggtt ggcattcagc ctgccgctgt cgaaaatcgg
    20761 cagcgtcagc ccgccggtaa tgccatattg ctgtgcggaa tggcggaaca gatcgctcag
    20821 atgtaacgca tcctgctgta aaaaagccat cagattgata tcgggataaa acgcggcctt
    20881 cgcggcgtca atgctgctca acgaggattc aatgtaccag tgcgcggcct gtagatccgc
    20941 ccggcgcgcc agcaacgaat accccagttg cgacggtaac tggctttcaa cggcggggag
    21001 actcacctga cgcagcttga gcgccgccga ttgcgtattg gttaacgcgc tgagccgcgc
    21061 ttcaataacc ttcattttac cgttaacgtc attcaactgc tgctgggttt tgctggcgtc
    21121 gatatcggtc tcgacccctt caacagaaga agtaataccg tgttgataca gctcccggtt
    21181 taccgccacc acgttttgct gctcatgctc gatttgcatc agcacatttt tcagcgccgc
    21241 ctgcgtctgc cactcccagt agagtcgcgc cacgccgctt gccagcaatt gtcgggtctg
    21301 ctcctgctcc gcttcgcgcg ctttgaccgc cccgatccgc gcggtaactt cagcgcggtt
    21361 tttcccccat aaatccagat cccagcccgc cgtcaggccg aatgtaccgt tggtatacca
    21421 cggcccggtc gttcccgccg cggggtcggt aatcgcgaat ggccccatca gcccttccgc
    21481 ggacattcgc tggcgctcaa tgtcggcaga aaagtcgagc tgcgggccgt cctgcgcctc
    21541 aaccgctttc gcctgcgctt ccgccagttg aatacgctgt tcagccacct gcatatccgg
    21601 cgaatgctgt atggcattat caatcagcgc gtcaagctgc gcatcgtgat acgccttcca
    21661 ccactggcta tccggccaac cgtttttcaa tgccgccggc aggctggaat caacatgaga
    21721 agagggcgtc tgctgggtca gcgactggcg ggtatcgtgc ataggggcgc agcccgccag
    21781 caaaataaaa agcggtaagc tcgctgtcgc ggcaaggaaa gaattacgat tcatggaggt
    21841 gttctgataa aaaaaggtgc gcagagagta cgtcttacgg cgaac
//
LOCUS       DAJVSD010000052        21364 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.052, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000052 DAJVSD010000000
VERSION     DAJVSD010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 21364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21364
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.052"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            65..829
                     /locus_tag="OQP62_001621"
     CDS             65..829
                     /locus_tag="OQP62_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1721203.1"
                     /translation="MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLE
                     QQGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKAAIGKLAASLVQPESCIYLDAGT
                     TTLAIARQLVTMNKLTVVTNDFVIADYLMDNSGCTIIHTGGAVCRENRSCVGEAAATL
                     LRGLMIDQAFISASSWSVRGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWL
                     ALSLAEFNQIVTDDGLPESAIRALAKVDISLLMAKQ"
     gene            complement(848..1252)
                     /locus_tag="OQP62_001622"
     CDS             complement(848..1252)
                     /locus_tag="OQP62_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HCS1721204.1"
                     /translation="MELRNTAFHLLRQLFQQHTARWQHELPELTKPQYAVMRVIAEHP
                     GIEQVDLTEAAVSTKATLAEMLSRMENRGLVKRENDPLDKRRRFVYLTVQGQTLLAAA
                     IPLGDRVDDEFLGRLSAEEREQFTQLVRKMMT"
     gene            1423..2016
                     /locus_tag="OQP62_001623"
     CDS             1423..2016
                     /locus_tag="OQP62_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HCS1721205.1"
                     /translation="MRLIVGMTGATGAPLGVELLQALRAIPDVETHLVMSKWAKTTIE
                     LETPYTPAEVAALADYCHSPADQAATISSGSFRTDGMIIIPCSMKTLAGVRAGYADGL
                     VGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAIVPPMPAFYNLPQTVDD
                     IIQHIVARVLDQFGLEHTRARRWQGLRQAANFSQENG"
     gene            2016..3443
                     /locus_tag="OQP62_001624"
     CDS             2016..3443
                     /locus_tag="OQP62_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HCS1721206.1"
                     /translation="MAFDDLRSFLHALDQQGQLLKISEEVNAEPDLAAAANATGRIGD
                     GAPALWFDNIRGFTDARVAMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPVA
                     PERRANPGWAENTVDGDAINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQ
                     NVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATP
                     LKYDQSEYEMAGALRESPYPIATAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFT
                     GHYSGGRNMTVVRIDKVSYHSKPIFESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFP
                     EVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFN
                     LPQVMWALSSKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDNRGHY
                     SQPVVDLPETKAWAEKLTAMLANRK"
     gene            3454..3690
                     /locus_tag="OQP62_001625"
     CDS             3454..3690
                     /locus_tag="OQP62_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721207.1"
                     /translation="MICPRCADAHIELMATSPVKGVWTVYQCQHCLYTWRDTEPLRRT
                     SREHYPQAFRMTQKDIDDAPMVPSIPPLLAEDKR"
     gene            complement(3735..4727)
                     /gene="rpoS"
                     /locus_tag="OQP62_001626"
     CDS             complement(3735..4727)
                     /gene="rpoS"
                     /locus_tag="OQP62_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000081498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoS"
                     /protein_id="HCS1721208.1"
                     /translation="MSQNTLKVHDLNEDAEFDENGVEAFDEKALSEEEPSDNDLAEEE
                     LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV
                     VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
                     QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER
                     ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLAR
                     RFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE"
     gene            complement(4790..5911)
                     /gene="nlpD"
                     /locus_tag="OQP62_001627"
     CDS             complement(4790..5911)
                     /gene="nlpD"
                     /locus_tag="OQP62_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator NlpD"
                     /protein_id="HCS1721209.1"
                     /translation="MSAGSPKFTVSRIAALSLVSLWLAGCTSSSNPPAPVTSVDSGSS
                     SNTNSGMLITPPPKMGATPQQAPQIQPVQRPVTQPMQTQPVTEQPVQMENGRIVYNRQ
                     YGNIPKGSYTGGSTYTVKKGDTLFYIAWITGNDFRDLAQRNSISAPYSLNVGQTLQVG
                     NASGTPITGGNAITQADAAQQGVVTRSAQNSTVAVASQPTITYSEGSGEQSANKMLPN
                     NKPAGTVVTAPVTAPTVSTTEPNASSTSTSAPISAWRWPTDGKVIENFGASEGGNKGI
                     DIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEV
                     KAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR"
     gene            complement(6087..6713)
                     /locus_tag="OQP62_001628"
     CDS             complement(6087..6713)
                     /locus_tag="OQP62_001628"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HCS1721210.1"
                     /translation="MVSGRVQALLEQLRAQGIRDELVLNALAAVPREKFIDEAFEHKA
                     WENIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVHHVCS
                     VERIKGLQWQARRRLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMA
                     QLDEGGILVLPVGDEQQFLKRVRRRGGEFIIDTVEAVRFVPLVKGELA"
     gene            complement(6707..7468)
                     /gene="surE"
                     /locus_tag="OQP62_001629"
     CDS             complement(6707..7468)
                     /gene="surE"
                     /locus_tag="OQP62_001629"
                     /EC_number="3.1.3.5"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HCS1721211.1"
                     /translation="MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNS
                     LTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVI
                     YSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNV
                     PDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVD
                     EGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW"
     gene            complement(7449..8498)
                     /gene="truD"
                     /locus_tag="OQP62_001630"
     CDS             complement(7449..8498)
                     /gene="truD"
                     /locus_tag="OQP62_001630"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HCS1721212.1"
                     /translation="MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHI
                     LLRILKNGCNTRFVADVLAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFS
                     AFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYF
                     GAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQ
                     VVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQ
                     DAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVV
                     RELINTMGDYAHIAE"
     gene            complement(8495..8974)
                     /gene="ispF"
                     /locus_tag="OQP62_001631"
     CDS             complement(8495..8974)
                     /gene="ispF"
                     /locus_tag="OQP62_001631"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HCS1721213.1"
                     /translation="MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHAL
                     TDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQA
                     PKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK"
     gene            complement(8974..9684)
                     /gene="ispD"
                     /locus_tag="OQP62_001632"
     CDS             complement(8974..9684)
                     /gene="ispD"
                     /locus_tag="OQP62_001632"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HCS1721214.1"
                     /translation="MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHA
                     LLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWV
                     LVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADL
                     WHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPE
                     DLALAEFYLTRTIHQEKA"
     gene            complement(9703..10014)
                     /gene="ftsB"
                     /locus_tag="OQP62_001633"
     CDS             complement(9703..10014)
                     /gene="ftsB"
                     /locus_tag="OQP62_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HCS1721215.1"
                     /translation="MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNA
                     KLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTH
                     R"
     gene            complement(10205..10528)
                     /locus_tag="OQP62_001634"
     CDS             complement(10205..10528)
                     /locus_tag="OQP62_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011233164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3561 family protein"
                     /protein_id="HCS1721216.1"
                     /translation="MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFL
                     LYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALF
                     IWLLG"
     gene            complement(10579..11184)
                     /gene="cysC"
                     /locus_tag="OQP62_001635"
     CDS             complement(10579..11184)
                     /gene="cysC"
                     /locus_tag="OQP62_001635"
                     /EC_number="2.7.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HCS1721217.1"
                     /translation="MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTV
                     AGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLI
                     VLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFT
                     GIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS"
     gene            complement(11171..12610)
                     /gene="cysN"
                     /locus_tag="OQP62_001636"
     CDS             complement(11171..12610)
                     /gene="cysN"
                     /locus_tag="OQP62_001636"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysN"
                     /protein_id="HCS1721218.1"
                     /translation="MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLI
                     GRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF
                     STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGI
                     KHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSA
                     NMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNPDFRGYAGTLASGSVKVGE
                     RIKVLPSGVESSVARIVTFDGDKEEVCAGEAITLVLNDDIDISRGDLLLAANETLAPA
                     RHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNG
                     IGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSA
                     FELELNALVRRHFPHWDARDLLGDKHGAA"
     gene            complement(12620..13528)
                     /gene="cysD"
                     /locus_tag="OQP62_001637"
     CDS             complement(12620..13528)
                     /gene="cysD"
                     /locus_tag="OQP62_001637"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HCS1721219.1"
                     /translation="MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVML
                     HLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINP
                     FVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDP
                     KNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLE
                     RDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVST
                     TSERQGRMIDRDQAGSMELKKRQGYF"
     gene            13779..14825
                     /locus_tag="OQP62_001638"
     CDS             13779..14825
                     /locus_tag="OQP62_001638"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HCS1721220.1"
                     /translation="MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFF
                     PGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIA
                     AHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKD
                     IPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLNNLIVGDKLYFNSGK
                     NTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSV
                     EATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIM
                     LPLVKELAKAEKTS"
     repeat_region   14840..15260
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=14901..14929
                     /rpt_unit_seq="cggtttatccccgctggcgcggggaacac"
     gene            complement(15345..15638)
                     /gene="cas2"
                     /locus_tag="OQP62_001639"
     CDS             complement(15345..15638)
                     /gene="cas2"
                     /locus_tag="OQP62_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000062285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated endoribonuclease
                     Cas2"
                     /protein_id="HCS1721221.1"
                     /translation="MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIW
                     QQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ"
     gene            complement(15641..16558)
                     /gene="cas1e"
                     /locus_tag="OQP62_001640"
     CDS             complement(15641..16558)
                     /gene="cas1e"
                     /locus_tag="OQP62_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated endonuclease Cas1"
                     /protein_id="HCS1721222.1"
                     /translation="MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHI
                     PVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWGGEAGVRVYASGQPGGARSDKLLYQ
                     AKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKW
                     QGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYD
                     IADIIKFEIVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGE
                     IQPPLPPEDSHPIAIPLPVALGDSGHRST"
     gene            complement(16558..17262)
                     /gene="cas6e"
                     /locus_tag="OQP62_001641"
     CDS             complement(16558..17262)
                     /gene="cas6e"
                     /locus_tag="OQP62_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001748704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein
                     Cas6/Cse3/CasE"
                     /protein_id="HCS1721223.1"
                     /translation="MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQ
                     FLFREEAHGGFFMLSAIPPLLQHSLFLIETKLFNPQLTNGLELDFQLRANPVITRNGK
                     RSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAG
                     DEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLG
                     KSKALGCGMLMVKRKR"
     gene            complement(17262..17987)
                     /gene="cas5e"
                     /locus_tag="OQP62_001642"
     CDS             complement(17262..17987)
                     /gene="cas5e"
                     /locus_tag="OQP62_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000666428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cas5/CasD"
                     /protein_id="HCS1721224.1"
                     /translation="MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAAL
                     GIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLA
                     SDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLAL
                     PLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQ
                     PVSRQRWQFGGYTRFNGPLQERT"
     gene            complement(17997..19055)
                     /gene="cas7e"
                     /locus_tag="OQP62_001643"
     CDS             complement(17997..19055)
                     /gene="cas7e"
                     /locus_tag="OQP62_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001804435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein
                     Cas7/Cse4/CasC"
                     /protein_id="HCS1721225.1"
                     /translation="MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSL
                     KRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKL
                     KSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVD
                     MALFDRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGE
                     QGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAY
                     ATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYREL
                     NVQEGTGSLAELLAFVSQ"
     gene            complement(19078..19680)
                     /gene="casB"
                     /locus_tag="OQP62_001644"
     CDS             complement(19078..19680)
                     /gene="casB"
                     /locus_tag="OQP62_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000935106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cse2/CasB"
                     /protein_id="HCS1721226.1"
                     /translation="MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRA
                     WRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENI
                     SFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADG
                     IFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK"
     gene            complement(19697..21232)
                     /gene="casA"
                     /locus_tag="OQP62_001645"
     CDS             complement(19697..21232)
                     /gene="casA"
                     /locus_tag="OQP62_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000366313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cse1/CasA"
                     /protein_id="HCS1721227.1"
                     /translation="MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGA
                     AWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSF
                     DPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAG
                     GAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPT
                     KTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKN
                     YGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPA
                     KVVRAAGQRNKMSLWCFAWDMNKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASE
                     SLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTR
                     HAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLA
                     LVE"
BASE COUNT         5079 a         5958 c         5338 g         4989 t
ORIGIN      
        1 aacttcacac gctgtgacga gaaatcgcgt aaaatcgcga caggactaaa gaaaggagca
       61 gacgttgata cctactgagc gtcgacaaat cattcttgat atggtggcgg agaaaggcat
      121 cgtcagtatc gctgaactga ccgagcgcat gcatgtatcc cacatgacta tccgccgtga
      181 tttacaaaaa ctggagcagc aaggcgcggt aatccaggtc tctggcggcg tgcaatcatc
      241 gactcgcgtg gcgcacgaac cctcgcatca gatcaaaacc gaactggcga cgccgcagaa
      301 agcggcgatt ggcaaactgg ccgccagcct ggtacagcca gaaagctgta tctaccttga
      361 tgcaggtacg accacgctgg cgatcgccag gcagctggtt acgatgaata aacttacggt
      421 ggtgaccaat gatttcgtta tcgccgatta cctgatggac aatagcggtt gcacaattat
      481 tcacactggc ggggcggtat gccgggaaaa ccggtcgtgc gtcggtgaag ccgcggcgac
      541 gcttttgcgc gggctgatga ttgaccaggc ctttatttcc gcctcttcct ggagcgtgcg
      601 cggtatttca acgccggcag aagataaagt cacggtgaaa cgggccgtcg ccagcgccag
      661 ccgccaaaaa attctggtgt gcgacgcgac caaatacggc caggtcgcga cgtggctggc
      721 gttatcgctg gcggaattca accaaatcgt caccgatgac ggcctgccgg aaagcgcaat
      781 tcgggcgctg gctaaagtgg atatctcact gctgatggcc aaacaatagc gaagcggcgc
      841 aagccgctta cgtcatcatc ttgcgaacca gttgcgtaaa ctgttcgcgt tcttcagcgc
      901 tcagtcgccc caaaaactca tcgtcaacgc gatcccccag tggtatcgcg gcggcgagca
      961 acgtttggcc ctgaacggtg agatagacaa aacgccgacg tttatccagc ggatcgtttt
     1021 ctcgctttac cagcccacga ttttccatcc ggcttaacat ctccgccagc gtcgctttag
     1081 tgctgaccgc cgcttcggtc agatcgacct gttcaatacc cggatgttca gcaataacgc
     1141 gcatcaccgc atattgaggt ttggtgagct ccggtagttc atgctgccag cgtgcggtat
     1201 gttgctgaaa aagttggcgt aacagatgaa acgcggtgtt tcgtaactcc atgagcgctc
     1261 cggataaatt aactttttct atcataacga cttatgcacg gttttttaat gacgaatgct
     1321 ttagctaaac gtgcgcaggc atcgggagcg atcttgtcgc aaaggccgtg tgggcgtatt
     1381 ttgatcaaaa tgttcgtata cgaacgatat ttgaggtaag aaatgagatt gattgtgggg
     1441 atgaccggtg cgaccggcgc gccgcttggc gtcgagctac tccaggcatt gcgggcgata
     1501 cctgatgttg aaacgcatct ggtaatgtca aagtgggcga aaaccactat tgaactggag
     1561 acgccctaca cgcccgctga ggtagccgcc ctggcagatt attgtcatag cccggccgat
     1621 caggcggcga ccatttcctc cggctcattt cgtaccgacg gcatgattat tatcccctgc
     1681 agtatgaaaa cactggcggg ggttcgcgcc ggctatgccg atgggctggt gggacgcgct
     1741 gccgatgtcg tgttgaaaga gggtcgcaag ctggtgcttg tgccgcggga aatgccgctc
     1801 agcacaattc atctggaaaa catgcttgcg ctttctcgta tgggggtggc gatagtgccg
     1861 cccatgcccg cgttctacaa cctgccgcaa accgttgacg atattatcca gcacatcgtg
     1921 gcgcgcgttc tcgaccagtt tggtctggag catacgcgcg cgcgccgctg gcaaggactg
     1981 cgacaggcag caaatttttc acaggagaat ggataatggc atttgatgat ttgcgcagtt
     2041 ttttacatgc gctggatcag cagggacaac tgctgaaaat cagcgaggaa gtgaatgcgg
     2101 agccggatct cgccgccgct gccaacgcaa cgggacgaat cggcgatggc gcgcccgcgc
     2161 tgtggtttga caatattcgt ggttttaccg acgcccgcgt ggcgatgaat accatcggtt
     2221 cctggcagaa ccatgccatc tctctgggtt tgccgcctaa cacgccggtt aaaaaacaga
     2281 tcgatgaatt tattcgccgc tgggacaatt ttccggtagc gccggaacga cgggcgaatc
     2341 cgggctgggc ggaaaatacc gtcgacggcg acgcgatcaa cctgtttgat atcctgccgc
     2401 tgtttcgtct gaacgacggc gacggcggat tctatctgga taaagcctgt gtggtatcac
     2461 gcgatccgct cgatcccgat aacttcggca agcagaatgt cggcatctac cgtatggaag
     2521 ttaaaggcaa gcgtaagctg ggtctgcaac cagtgccgat gcatgatatc gcattgcacc
     2581 tgcacaaagc cgaagagcgc ggggaagatc tgccgattgc gatcacgttg ggtaacgatc
     2641 cgatcattac cctgatgggc gcaacgccgc tgaaatacga tcagtcagag tatgaaatgg
     2701 caggcgcgct gcgtgaaagc ccctatccta tcgccaccgc gccgctgacc ggttttgatg
     2761 taccgtgggg atctgaagtc attcttgaag gggtcatcga aagccgtaaa cgtgaaattg
     2821 aagggccgtt cggcgaattt accggccact attccggcgg tcgcaacatg accgtggtgc
     2881 gtatcgataa ggtctcttac cacagcaaac ccatttttga atcgctctat ttggggatgc
     2941 cgtggacgga aatcgactac ctgatggggc cggcgacctg tgtgccactg tatcaacagc
     3001 tgaaagccga atttccggaa gtgcaggcgg taaacgctat gtacacccac ggcttgctgg
     3061 ccatcatctc gaccaaaaaa cgctacggcg gctttgcccg tgcggtgggc ctgcgcgcga
     3121 tgacgacgcc gcacggtctg ggatatgtga agatggtgat catggttgat gaagatgtcg
     3181 atccatttaa tctgccacag gtgatgtggg cgttgtcgtc gaaagtgaat ccggcaggcg
     3241 atctggtaca gctaccgaat atgtccgtcc tggaactgga cccgggttca agcccggcgg
     3301 ggattaccga caaactgatc attgacgcta ccacgccggt tgcgccagat aaccgtggtc
     3361 actatagcca gccggttgtg gatttaccgg aaactaaagc ctgggctgaa aagctgaccg
     3421 ccatgctggc caaccgtaaa taaggagtaa ccgatgattt gtccacgctg tgccgatgca
     3481 catattgaac tcatggcgac ttcgccggta aaaggagtct ggacggtata tcagtgtcag
     3541 cattgtctgt atacctggcg cgataccgaa ccgttacgcc gtaccagccg cgaacactat
     3601 ccacaagcgt ttcgcatgac gcaaaaagat attgatgacg cgccaatggt gccgagtatc
     3661 ccgccgttgc tggcagaaga caaacggtaa aaaaaaggcc agtctgtcga ctggcctttt
     3721 tttgacaagg gtacttactc gcggaacagc gcttcgatat tcagcccctg cgtctgcaga
     3781 atttcgcgca gacggcgcag gccttcaacc tgaatctgac gaacacgttc acgcgtaaga
     3841 ccgatttcac ggcctacatc ttccagtgtc gcagcttcat atcccagcag accgaaacgg
     3901 cgcgccagca cttcacgctg tttggcgttc agttcgaaca accatttgac gatgctctgt
     3961 ttcatatcgt catcttgcgt ggtgtcttcc ggaccgttct ctttttcatc ggccaggatg
     4021 tccagcaacg ctttttcgga atcaccgccc agcggggtgt ctaccgaggt aatgcgctcg
     4081 ttgagacgaa gcatacggct gacgtcatca accggtttat ccagttgctc tgcaatttct
     4141 tccgcactcg gttcgtggtc cagtttatgc gacaactcac gtgcggtgcg caggtatacg
     4201 ttcagctctt taacaatgtg aatcggcaag cgaatcgtac gggtttggtt cataatcgcc
     4261 cgttcgattg tctggcgaat ccaccaggtt gcgtatgttg agaagcggaa cccgcgttcc
     4321 gggtcaaact tctcgactgc acggataagc cccaggttgc cctcttcaat caggtccagc
     4381 aacgccagtc cacgattgcc ataacggcgg gcaattttta ccaccagacg caggttactc
     4441 tcaatcatgc gacggcgaga agcgacatct ccacgcagtg cgcgacgcgc aaaatagact
     4501 tcttcttcgg ctgttaacag tggtgaatac ccaatctcac caaggtaaag ctgagtcgcg
     4561 tccaacacac gctgtgtggc cccttgcgat aacagctctt cttcagccag gtcgttatca
     4621 ctgggttcct cttcactcaa ggctttttcg tcaaaagcct ctactccgtt ctcatcaaat
     4681 tccgcgtctt catttaaatc atgaactttc agcgtattct gactcataag gtggctccta
     4741 cccgtgatcc cttgacggaa ctagcaagtc aaagcctggt tccgccgctt tatcgctgcg
     4801 gtaaataacg cagcgggttt acggatttcc ccttgtaacg aatttcaaaa tgcaagcgtg
     4861 tagagctggt gccggtgcta cccatagtag cgattttttg ccccgcctta acttcctgtt
     4921 gttcccggac cagcatcgta tcattatggg cgtaggcact caggtaatca tcgttatgtt
     4981 tgatgataat aagattaccg taaccacgca gtgcgttacc ggcatatacg acgcgcccat
     5041 cagcggttgc gacgatagcc tgtcccttac tgcctgcaat gtcgatccct ttattgcccc
     5101 cttcggaagc gccaaagttt tcgatcactt tgccatccgt cggccagcgc catgcggaaa
     5161 tcggcgcgct ggttgacgta ctgcttgcat ttggttcggt cgtgcttacc gttggtgccg
     5221 ttacaggcgc tgtgacaacc gtcccagcag gcttgttgtt tggcaacatt ttgttagcac
     5281 tttgttcacc tgagccctca gaatacgtaa ttgttggttg agacgcaact gcaacggtgg
     5341 aattttgtgc agacctggtc acaactcctt gctgtgctgc atccgcctgg gtgatcgcat
     5401 ttccgccagt aattggcgta ccggatgcgt taccaacttg caaagtttgc cctacattca
     5461 ggctatacgg ggcagaaata ctgtttctct gggccagatc gcggaaatca ttcccggtaa
     5521 tccaggcgat gtaaaaaagc gtatcaccct ttttcacggt gtaagtactg ccgcccgtat
     5581 agctaccttt cggaatattc ccatactggc gattgtatac gattcgccca ttttccatct
     5641 gcacgggttg ttccgtgacc ggttgagttt gcatgggctg cgttacagga cgctgaacgg
     5701 gttgaatttg cggcgcttgt tgcggcgtcg cgcccatttt tggcggcggt gtgatcaaca
     5761 tcccggaatt ggtatttgat gacgacccac tgtccacaga cgtgaccggc gccggagggt
     5821 ttgacgaact ggtacaacct gccagccata gtgaaaccag tgatagtgcc gcaatgcgac
     5881 taacggtgaa ttttgggctt cccgcgctca tttatccccc aggaaaaaat ttggttaaca
     5941 accagtgacg taagaaccgt gcaacgcatt aagtgaacac gggaaaatgt gttcacgata
     6001 cgcttaaccc accgggaata accaggaaaa ctccaggtat tcgtttcggc ttcatcaggc
     6061 gtaatagtgg ctgtttgcag ggcaaactag gccagctctc ccttgactaa cgggacgaag
     6121 cgaacggcct ccacggtatc gataataaat tcgccgcccc ggcgacgcac gcgtttcaaa
     6181 aactgctgct catcgcccac aggcagaaca agaatgccgc cttcatccaa ctgtgccatg
     6241 agcgcggtag gaatttccgg cggcgcggcc gtcacaatga tagcgtcaaa cggcgcacgc
     6301 gcctgccagc cttgccagcc atcgccatga cgggtagaaa cattatgtaa atcgagctgc
     6361 ttcaggcggc ggcgcgcctg ccattgcagc cccttaatcc gctcaacgga gcaaacgtga
     6421 tgtaccagat gcgctagaat cgccgtctga tagccggaac cggtgccaat ttccaacacc
     6481 ctggattgcg gcgtcagttc gagcagttcc gtcattcgcg ccaccatata gggctgcgaa
     6541 atcgtctgac cctggcctat cggcaaagcg atattttccc aggccttatg ttcaaacgct
     6601 tcatcaataa atttctcgcg cggcactgcg gcaagcgcat taagcaccag ctcatctctg
     6661 atgccctgcg cgcgcaattg ttcaagaaga gcctgtacac gtccacttac cattgcgtgc
     6721 caactcccac gctgtctaac cagtctgaaa ccacatcatg cgcgctgtgc gcggttaaat
     6781 ccacatgcaa cggcgtgacg gagacgtagc cttcatccac cgccgcgaaa tcggtatccg
     6841 gcccggcatc gtatttatca cccggcgggc caatccagta caatgtatta ccgcgtggat
     6901 cttcctgcgg gatcacttta tccgctggat ggcggctacc gcagcgagtc acgcggatgc
     6961 ctttaacctg cgctaacggt agatccggga cattcacgtt gagaatacgc ccggtacgca
     7021 acggctcccg gcttaaccct cgcaaaagcg cgcaagtcac ggctgcagcc gtatcataat
     7081 gctgatagcc gttaagggag accgctaatg ccggaaagcc gagatgacga ccttccatcg
     7141 ccgcggcgac agtaccggaa tagatcacat catcgcccag attcggaccc gcgttaatac
     7201 cggaaacgac aatatccgga cgcggacgca ttaaggcatt aacgcccaga tagacgcaat
     7261 cggtcggcgt ccccatctgt acagcgatat cgccattatc aaaggtaaaa gtacgaagcg
     7321 aagattccag cgtgagggaa ttagacgcgc cgctgcggtt acgatccggg gctacgacct
     7381 gtacatcagc aaactcacgc agcgctttcg ccagcgtttg tataccgggc gcgtgaaccc
     7441 cgtcatcgtt actcagcaat atgcgcataa tcacccattg tgttgatcag ttcccttact
     7501 acgctggtgg caaaactgcc tgcgggcagc cagaaacgta actcgacggt aacgtcatcc
     7561 caccagttcc agcttaattg ttgcggataa agcagcatcg ctctgcgcga cgcctctact
     7621 ttttcgcgca gcaacagcga ttgcaacacc gtttcctggg caatggcatc ttgctcaaac
     7681 gccagcgccg cacgctgtgt tccccactct ccgctgcccg gcaacgacgc tgtaatcatc
     7741 agctcttttt cgtctacccg gcgctgcaat tcaggcagtt cttcagatgt cgcgacgaac
     7801 cagcttccac gccccgctaa ttgtagcgca tcgccgtcaa caacttgatt aaagtctggt
     7861 ttcttcagcc gctggtgaac aatttgatta aacaacgcgc tacgcgccgc cgacaaccaa
     7921 aaactgcgtt tattgcgatc gcgcaccggc gcgttacttt gcgcccagcg cagcgcgccc
     7981 tgcaagttgc tgccgccaat gccgaatcgt tgtgcgccaa aatagttcgg cacgccgcca
     8041 tcgcgaatcg cctgcaatcg tgtttcgaca tcgcggcgat cgcttatttc acgcaatacc
     8101 agcgtaaagg cattgccttt cagcgcgcct aaacgcagct tacgcttgtg acgcgcgtat
     8161 tccagtactt tacaaccttc cagctgaaag gcgctgaaat cgggcatctc tttccccggc
     8221 acgcgcgcgc acagccactg ctcggtaacg gcgtgtttat ctttttgccc ggcaaagctc
     8281 acttcgcgag cgtgaatttt caggaatttc gccagcacgt cagcgacaaa acgggtattg
     8341 caaccgtttt tcaaaatacg cagcagaatg tgctcgcctt caccatccgg cgtaaagcct
     8401 aaatcttcaa ccaccacaaa atcttccgga ttcgctttca gcaatccgct accttgtggt
     8461 tttccgtgca gccaggtgag attgtcaaac tctgtcattt cgccgccttc atcagcaacg
     8521 ccaccgcttc gcaggcaatg ccttctccgc gtccggtaaa tccgagcttt tccgtcgtcg
     8581 tcgccttcac gttaacatca tccatatggc agccgagatc ttcggcgata aagacgcgca
     8641 tttgcggaat atgcggcagc attttcggcg cctgcgcaat aatggtgaca tccacgttgc
     8701 cgagggtgta tcccttggcc tgaatacgac gccaggcttc acgcagtagt tcgcggctat
     8761 ccgctccctt aaatgccgga tcggtatccg ggaagagctt gccgatatcg ccaagcgccg
     8821 ccgcgcccag cagcgcatcg gtcagcgcat gtaacgccac atcgccatcg gaatgcgcca
     8881 atagcccttt ttcataaggg atacgcacgc cgccaataat aatcggccct tctccgccaa
     8941 acgcgtgtac gtcaaaaccg tgtccaattc gcattatgct ttctcctggt ggatggttcg
     9001 ggtcagataa aattccgcca gcgccagatc ttccggacgg gtgaccttga tgttatccgc
     9061 gcgaccttct accagcgccg gatgaaaacc acaatactcc agcgctgacg cctcgtcggt
     9121 gatggtcgcg ccttcattca gcgcacgcgt cagacaatcg tgcaagagtt cgcgggggaa
     9181 aaactgcggg gtgagcgcgt gccataaatc ggcgcgctct acggtatggg caatagcgtt
     9241 tttccccggt tcgccgcgtt tcatggtgtc gcgcaccgga ctggcgagaa taccgccgac
     9301 ccggctgttt tcgctgatgg ccagtaaccg cgcaaggtca tcctgatgca aacagggtct
     9361 tgccgcgtcg tgcaccagca cccactgcgc ctttgcaacg gcctgtaacc cggccaaaac
     9421 ggaatcagcg cgttcgttgc cgccatccac aacggtgatt tgcggatgat tcgccagcgg
     9481 aagttgggca aagcgatgat cgccagggct gatagcaata acaacgcgtg tcacccgagg
     9541 atgcgccagc agcgcatgaa ctgagtgctc cagaatggtt ttattaccga ttgagagata
     9601 ctgcttagga cattctgttt gcattcggcg gccaaatccg gccgccggca ccacggcgca
     9661 aacgtccaat aaagtggctg ccatgttaaa tccctggatg gtttatcgat gagtttgccc
     9721 cgccgttgcc gcgcgttttg aggcgtcagg caccagacga tagaaggttt cgcccggttt
     9781 ggtcatgcta agttcgttgc gcgcgcgctc ctcaatcgct tcctggccgc cattgagatc
     9841 gtcaatttcg gcaaaaagct gatcgttacg cgctttaagt ttggcgtttg tcgcctgctg
     9901 cgcgaccaca tcatcgttga cgcggctata gtcatgtatg ccgttcttac cgaaccacag
     9961 cgagtactgt agccagacca gtaaagccag caacagcagc gttagtttac ccatcctgcc
    10021 ccctgaaaaa cggcatcatc atcccataac gtcctctgtg actccacatt caggacggga
    10081 ttgccgcgac aacgccggca aatgtaccac atttgccgga tgttacgtat acccgagtaa
    10141 ggagaacata atctcattgt tggttacggt ttgaattatg accggaggcg cagtgataac
    10201 ccgtctaccc taatagccat atgaataacg cgccgaacag cgcgcctacg gccagtagag
    10261 taaacatgat gctaaaaagt attttgccct ttaccaacag atgcaacgca atgccgataa
    10321 tcaccgatac cggcattaac gcgaggaaaa agggccaagt atagaggaaa aaaaacagcg
    10381 tgttagggcc ataaagcaga aaagggatcc ccaacgccag cagccatgac acaaagccga
    10441 ccaccgcccc cggaaatgca ctggtggcgt catcgtcgac catgaaggcg tctgaccttg
    10501 tgaaagtaat gttatggcta ttacgcatat taaatcctgt aaccttgacc ataccgggca
    10561 tacaagcccg gtggtgtctc aggatctgat aatatcgcgc cgtctcagca ggtctaataa
    10621 ttgggaaacc aaatttgtta ctaattgttc accattaaga tgaacctggg gcgagtcagg
    10681 cgcttcgtaa atggcgtcga taccggtaaa gttacgcaac tcgcccgcgc gcgctttttt
    10741 atacaatcct ttaggatcgc gctgttcaca gatagccagc ggcgtattga cataaatctc
    10801 gataaaacga tcgtggccga cgcgctcttt taccagttgc cgctcggcgc ggtgcggaga
    10861 aataaatgcc gtcaaaacaa tcaggccagc gtccgccatc agactggcca cttcgcctac
    10921 ccgccgaata ttttcctggc gatcggcatc gctaaagcct aaatcacggc acaaaccgtg
    10981 gcgcacatta tcgccatcca acaggtaggt actgacgcca cgctgatgta acgcctcttc
    11041 cagcgcgccg gccaccgttg attttcccga accggagagt ccggtaaacc acagcaccac
    11101 gccacggtgg ccgtggagct gttcacgagc ggcgacagta acgggatgag agtgccagac
    11161 cacgttctca tcatgcagcg ccatgtttat ctcccagcaa atctcgggcg tcccagtgcg
    11221 gaaaatgacg gcgtaccagc gcattcagct ccagctcaaa cgcactgtat tccacgggcg
    11281 gcgtcgctcc gcgttcatcc agttcccgca ccatgccagc acccacggta acgttagaaa
    11341 gtcggtcgat aaaaatcagc ccgcccgtca ccggattttg ctgataaata tccagcgcga
    11401 gcggctcatc gaatgtcatc tctaccagac caataccgtt taacggcagg ctctcgacgt
    11461 ctcgttgagt cagattgttg atatcaatct gatagcaaat agcctcgata cgcgcgcggg
    11521 ttttcttacc cgcaagttta acgtcgtagc tttggcccgg cgccagcggc tgttccgcca
    11581 tccataccac atcgatcgcg gcgtgccgcg caggtgccag cgtctcgttt gccgccagca
    11641 gcagatcgcc gcggctaata tcaatgtcgt cgttgagtac cagggtaatg gcttcgcccg
    11701 cacagacttc ttctttgtcg ccatcaaaag tgacgatacg cgccacgctg gattccacgc
    11761 cggacggcag cactttaatg cgctctccga ctttgacgct accagacgcc agagtgccgg
    11821 catacccccg aaaatcaggg ttcgggcgat tgacgtattg tactggaaag cgcatcggct
    11881 gacggtctac cgcacgctgt atgtctaccg tttccaggac ttccaacagc gtcgggccgc
    11941 tgtaccagcg catattggcg ctctgcgcgg cgacattatc cccttccaac gccgaaagcg
    12001 ggacaaagcg aatgtccaga tcgcccggca actgttcagc aaaggtcagg taatcttcgc
    12061 gaatacgggc gaaggtctct tcgcggtagt caacgagatc cattttgttg attgccacca
    12121 ccaggtgttt gatccccaac agagtggaga taaagctatg gcgacgcgtc tgatccagca
    12181 cgcctttacg cgcgtcgatc agtaggatcg ccagatcgca ggtggacgct ccggtcgcca
    12241 tattacgggt atattgttca tggcccggcg tgtcggcgat aataaatttt cgtttttccg
    12301 tggagaaata gcggtacgcg acgtcaatag taatgccctg ctcacgctcg gcctgcagcc
    12361 catctaccag cagcgccaga tcgagttttt ctccctgcgt gccatgacgt ttactgtcat
    12421 tatgcagaga agagagctga tcttcataaa tttgcagggt atcgtgcagc aaacgaccta
    12481 tcagcgtact tttaccgtca tcaacgctgc cacaggttaa aaaacgcagc aggcttttgt
    12541 gttgttgggc aatcatccag gcttcgacgc cgccttcact ggcgatttgt tgtgcaagta
    12601 tggtgttcat ggcggctcct tagaaatacc cctgacgttt tttaagctcc atcgaccccg
    12661 cctgatcgcg gtcaatcatc ctcccctggc gctcgctggt ggtagaaacc agcatctctt
    12721 cgataatttc cggcagcgtt tgcgcgtggg attccaccgc cccggtgagc ggccaacagc
    12781 caagtgtacg gaagcgcacc atcctttttt tgatgacttc gccaggttgg aggtcgatac
    12841 gatcgtcatc caccatcatc aacatgccat cacgttccag aaccgggcgt tcagcagcca
    12901 aatacagcgg cacgatgtcg atgttttcca gccagatgta ttgccagata tcctgctctg
    12961 tccagttgga gagcgggaag acgcgtatac tttcgccttt attaatctga ccgttatagt
    13021 tacgccacaa ctctggccgc tgatttttcg ggtcccagcg atggaaacgg tcacgaaagg
    13081 agtaaatacg ttctttcgcg cgggattttt cctcatcgcg ccgtgcgccg ccgaacgcgg
    13141 catcaaaacc gtacttattc agcgcctgct ttaacccttc ggttttcata atgtcagtgt
    13201 gtttagcgct accgtgaacg aacggattga tgcccatcgc cacgccttct ggatttttat
    13261 gtaccagcaa ttcgcagccg tatgcgttgg cggtacgatc gcgaaaggcg tacatctcac
    13321 ggaatttcca accggtatca acgtgcaata gcgggaacgg taacgtaccc ggataaaacg
    13381 ccttacgcgc cagatgcagc atgacgctgg agtctttacc aatggagtac agcatgaccg
    13441 gattagcgaa ttccgctgct acttcacgga taatgtggat actttccgcc tccagttgcc
    13501 gcaggtgggt gagtcgtttt tgatccataa ccgttccttt gcaataccgt tttttgctaa
    13561 acatttcgat tacacgacta tagggagcgc gggagagtga atgaaatgac gaattggaat
    13621 gagtagttcc tcaaaggaat aacgcggccc aaaaaccaat atcaaaaaat gcttaacgta
    13681 ccggattgcc agcatttagg agcaaatgaa attgtattaa cacgatcgcg gtttcatact
    13741 agccccgtaa aattttgttc tgtatttaag gactcattat gttttccgca acgcgccgct
    13801 ttgccgtcat tctggcgctc ggcgtaggct ttatccttcc tgcacaagca gcatcaccag
    13861 ggcctggtga aatagcgaat actcaggcac gacatatcgc cacctttttt cccgggagaa
    13921 tgactggctc ccccgccgag atgttgtctg ccgattattt acgccaacaa tttacccaga
    13981 tgggatacca aagcgatatt cgaacgttta atagccgatt tatttatacc acgaaggata
    14041 atcgcaaaaa ctggcataac gtgacgggca gtacggtcat cgccgcccat gaagggcgcg
    14101 tgccgcagca gatcatcatt atggcgcatc tggataccta cgctccgcag agcgatgctg
    14161 atgtcgatgc caatctgggc ggtttaacgt tacagggaat ggatgataat gccgcgggat
    14221 taggcgttat gctggaactg gcggcgcgtc tgaaagatat accgacccat tatgggattc
    14281 gttttatcgc caccagcggg gaagaagagg gaaagctagg cgcggaaaat ttactcaaac
    14341 gaatgagtga cgctgagaag aaaaatacgc tgctggtgat taatctcaat aacctgattg
    14401 ttggggacaa gctctatttt aatagcggga aaaatacgcc ggaagcggtg cgtacactga
    14461 cccgcgatcg ggcattagcg attgcgcgcc gttatggcat cgccgccaac accaatccgg
    14521 gacgcaatcc atcctacccc aaaggaacgg gttgctgtaa tgatgcggag gttttcgata
    14581 aagcgggaat atcggtgctt tctgttgagg cgacgaactg gaatctgggt aaaaaagacg
    14641 gataccagca acgtgtgaaa aatgcatcct tcccgaacgg caatagctgg cacgacgtac
    14701 ggcttgataa tcaacagcat atagacaagg cgctgccagg gcggattgag cgccgtagcc
    14761 gcgatgtagt gcggataatg ctgccgttgg taaaagagct ggcgaaggcg gaaaaaacgt
    14821 cctgatatgc tggtgaaacg tgtttatccc cgctggcgcg gggaacacgg acagcaaccc
    14881 gtgtcggata tcagacagat cggtttatcc ccgctggcgc ggggaacaca cgcgaatcgc
    14941 caatcgccgc cgcgtgaatt gcggtttatc cccgctggcg cggggaacac ccacgatgta
    15001 tgccgaccgt gatttttacc gccggtttat ccccgctggc gcggggaaca cagatacgcc
    15061 tttacgtcgc cctctttggc gcgcggttta tccccgctgg cgcggggaac acattaaaaa
    15121 agattaatgt tggttatagt tttacggttt atccccgctg gtgcggggaa cactaaaaca
    15181 ccggttgcgc aacctccgcg gggatcggtt tatccccgct ggcgcgggga tcggtttatc
    15241 cccgctggcg cggggaacac tctaaatcta cccaattgaa tttaaatact tttttagcgc
    15301 acaaaaaacc caccaacttt tcctaatttt taaagatctc taacttattg attttcaaca
    15361 ggtagaaacg acaccaatcg cagtccatca agatctaccg gaatacgtcg atttacacca
    15421 aaagtctgaa actcaaaacc tgattctgta tttgtcgccc acgccataac aacatttccc
    15481 tcatctgcca gaacggaaac ctgttgccat atcatctcgc ggatctttgc ggaaacatca
    15541 ccaacataca caccagctcg aatttccagt aaccagacgg ccagcctccc ccgcagacga
    15601 ggaggaacat tttcggtaac gacaaccagc atactcatcg ttaggtactc cgatgaccgg
    15661 aatctcccaa cgcaacagga agagggatcg ctatggggtg tgaatcttca ggaggtaacg
    15721 gcggttgaat ttcccctgcc gcgagaacat cttcaataag aggaatcaat ttcgccaatg
    15781 tttttccact gcggaagata tcccggcagg caatacggac atcacgatcg ggctcggcag
    15841 gattacgtcg cgcaatttca aatgctttcg gtacaacgat ctcaaattta atgatatcgg
    15901 caatatcata gacaaaagaa agcggcttgc cggtgtgcac aaatccaatc gcgggcgcat
    15961 atccggcagc cagtattgcc gcctccgtta cgccatagag gcaggaggtt gccgagctga
    16021 tacactgatt aatgacatcg cctttctccc agtctttcgg atcgtagcga cgtccctgcc
    16081 atttcacgcc atactgctta gcaagtagtg cataggttgc ccgcacacgg ctcccctcaa
    16141 taccacgcaa ttgatctaca gaacgacggc tcggcgcggg ttcgccaaaa cgtaattcaa
    16201 acattttacg cacgaccttc agccgcaaat cttcatccag tgcaagtttc gcctgataaa
    16261 gcaatttgtc ggaacgggca ccaccaggct gccccgaagc gtaaacgcgt acgcccgctt
    16321 ccccccccca caccagtaac gtacccaccg ttgccgcaag tcgcacggcg gcatgggaaa
    16381 cccgcgtccc cggttccagc atgatgcagg ccaccgatcc aacaggaata tgggtacgta
    16441 cacccgtttt atcgataagc acaaacgcac cgtcgatcac atcaatttgt ccgtactgga
    16501 gaaatatcat cgaaacacgg tctttcaacg ggatgggatt cagcggcagc cagctcatca
    16561 gcgtttcctt tttaccatca gcattccgca gcccagcgct ttacttttac ctaatccgga
    16621 aaataaagcc tgtttaaaca gtgctgcatc ggtgatacag agcgcaccgc taaaatcaac
    16681 gctactgaaa gtgattgggg tttcctggtc tttacggaca aaacgatgtt gctgatacgc
    16741 ttgcacgcat ccacaatgcg cctgcaattc actgtactcg tcaccagccc acatagcgaa
    16801 atcatcaggt tccggtgcaa tcaaccggaa accatgctgc tgcccttgtt gttccagcca
    16861 cgcctgcgcg gcctgctgtt gaagctccca ccaccgttct ttctccacac cattcgcctt
    16921 cgcctgatgt ttcgcgttca tcatcacgtc actgcgctta ccgttacggg ttatcaccgg
    16981 gttagctcgt agttgaaaat caagctcaag accatttgtc agttgcggat taaatagttt
    17041 ggtttcaata agaaacaggg agtgctgcaa taacggcggt attgccgaga gcataaaaaa
    17101 gccgccatgc gcctcttcgc gaaacagaaa ctgacgcaat tcctgttccg gaaagagctg
    17161 ccataaccac tggtggctgg cataaggcct ggctgaattc cactttgcca acatctccgg
    17221 tcgcaaatta ttaaaccgga gttgaatacg agaaagatac attatgttct ctcctgcaac
    17281 ggcccattga agcgggtgta gccgccaaac tgccagcgtt ggcggctaac tggctggtta
    17341 ttgctatgct gcttttgttg ccagaccaga ctctcctcat caggatcatc ccaataacaa
    17401 ataccctcac gcagggtaaa tccacttaat tccgctgcgg aaatctcctc cacagcatga
    17461 gtgaatacct cttttaaggt gccggtcatt aaacgcgccg ctaacggtaa cgccagcggg
    17521 caggattttc tccccagata gagcggaaaa tgcggtgtca gcagcgcctc tcgcaattcg
    17581 ctaagcgaat atggtgcatc aggcgtggcg cttattgcca catgccagta gccatcgcag
    17641 cgatactctc gctgcgagat aagcgttccc acttcatccg acgcgagagt cagttcatcc
    17701 cggcgcgtgt aataacgata ctttttgttt tctcgcggcg cgctaaccgt gtgataatcc
    17761 cgcaaccagc gatcttgtga agccaacgcg tgcaccgcca gatgatagtg ccggttaaag
    17821 ttattcagcc gcgcttcttc gtcgcgacga attcctaacg ctgcggcaag cagacccaat
    17881 agcgcagagc gcgtgggaac cgtagctgag tggcgaatct cgccagacgc ttcctccccc
    17941 cacgacgcca gcggcgcata aagctgaaaa accagatatt ccttcattat tcatccttac
    18001 tggctaacaa aggccagtaa ttccgccaga gatcccgtac cttcctgaac gttcaactca
    18061 cgataatcgt ctgcacagtt tccatatacg ctatcgaagc tggcgcgctg ctgttttaaa
    18121 cgggttattg ccgcaggaat ttgatcggta tcgcgtaccg gctggaaaaa tgccgccgcc
    18181 agagaacgcg gttgtttttg cccgacttcg gccaacgcat aggtggcata ggcacgagaa
    18241 gcgaagctgt tttgtttacc ggttggcgag acggttaacg ctgtttcagt gagtgccgcg
    18301 atagtacgct tcgccagttc ttcgttacca cccaggtttt ccaccagcag atcgcggctg
    18361 atacagacat aggtatagaa aagcgccgag gcaaaaccct gctcgcccat atgcccggaa
    18421 cctgcgtctt cctctttatt attcagatcg tcaacggcgg tgaaaaaatc agactcaacg
    18481 gtcacggcac ttacgcccaa cgcatgggat acctgacaag cagcctcgac gttgaactca
    18541 ggcgatgacg ccagcatacg gtcaaacagc gccatatcta cgctacgctg ttctttgcgc
    18601 agaagcttca cttcttcatc gttaggttcg cgtttgtcgg caattagcgt atcaaccagt
    18661 tgtttaatca aactaatttc atggttactg acgtgaacga tctgctcaat ttcgagattt
    18721 ttttccggtt tcgcatcttt atcactttta agcttgccaa attgcttagc gattaactca
    18781 gacgaactct tagcaatttt ttcttcaatt ccggcatctt tcatcggacg ataaacataa
    18841 tccacgccaa ttcgacgagt acgcttaccc ataaagccat ccattgccgc ttcaaaagtt
    18901 tccgacaccc gccaggcacg cttcagactt tgcgacgata cgcgtaaacg ctcaactcct
    18961 cccataaacg cggtcttcgg tctgccagac tcatcacgat tcaggttagc gggcgcataa
    19021 gcagtcaata aatgcagttg aataaaagtt gtcattatca aatccttcta aaaatgatta
    19081 tttgccacgc gacgtggaaa gatattcgtt cgcccaacgg atgcgacttc gttcaaaggg
    19141 gttacggaat tccggctgat ggttttcgcg tcgttgccac tcttccatcc acaggaaaat
    19201 gccatcggca agtgaaagaa cattcacccc ctccgtaccg cgaatcttca ctgcctgaat
    19261 caacaactgg caaaatgttt ccgggtcgga cgctttttgc aaacgttcaa aacgcagacc
    19321 agaaacgcac gacgtggaac ctttaagctt ttcccctaac tgcgcagcga aactaatatt
    19381 ctccttatga ctcttaatat gcacagcgac gctgacaaac agagccagag ccatctcatc
    19441 aagaggttgc agtcgcatat gtttaagcag agcctggcgg agagcgtcat gtccttcaca
    19501 tatcattacg ccatatggcg gcgccattct tttcaactca gcccgccagg cgcgaccgtt
    19561 gactcgttta ccatccttgc gctcataacg ctcagacagc gtagcaaacc agtcaagtag
    19621 tgccttctgc gcatcggggt ggagaattct gcataacact gctgtattgc tattcagcat
    19681 atttggcttc cttctgttat tcgaccagcg ccaacacatc cttgcgcgct ttatgtttac
    19741 gatagctgct ggctaaatcc tgtcgggccg tcagctggcg ctgcaggata tcgtccgggc
    19801 agtcggggtt ggtcagggca tcacggtcaa aaacgtgaaa tagatagtgt gctaattccg
    19861 cctcccactg acttactgcg tgacgagtct gtgtatcctg ccgaagcgga tcgacagcca
    19921 gcgcctcttg caacgtccga aaagcgggtt cggtttcctg ccagaaggcg atatccacca
    19981 tactaaaatc cattttggct tctttcggac aatcgaattt ggcgctcttt aacgcgttcc
    20041 gtaacagcga cagcgactca ctagccagca ccagcacaat gttaagcgca gcgagaaatt
    20101 gctcttcgtg cgaaacgcta atgagcggaa ttcggtgctg ataccagcag cggaccttgg
    20161 ccttattcat atcccaggca aagcaccaca ggctcatttt gttccgctga ccagcggcac
    20221 gaacgacctt tgcaggctgc attttgttga acttatcctc acgattgagc atcagcccca
    20281 accagtcttt ataacttaac ccgcccggct gccctttaaa cgccagccag ggtgcggatg
    20341 gatctttcaa tgcctgccga tatggggaga agggatgtag ccaactgtcg tactgaacgc
    20401 cataattttt actacgcatt tgcagtagca gtgattcgtg atgctccccg cacaaatcgc
    20461 agatacctgc cacagtgtgg gtgaaatcca gttctatgcg ccgcggcatc ccccagtagg
    20521 cttgcaaggg gtgcgcatta tccggtgtga ccacattccc cgctttttcg ctggttttcg
    20581 tcggcgcaag ccagggaaaa atgagtggat gctgtgtaac attcggcggc tcttcctgcg
    20641 gcaaaacgtt aagccaaagt tttttccata gtggatattt atcttcttcc tgcggtacca
    20701 ccagcgtagt cagcggacca ccgccgcgca tccctacccg gtaacccgcc ccgccggcag
    20761 gtgaattggt ttgaatcgca aatagcgcta tcgccgcgca gtgaggacat atttgttcta
    20821 cgttgccacg ttttacaaaa tgatctttat tgagcttgag cgcattcccg cccggcgcat
    20881 ccaccagcag cccggcaata gaaccatatt cactatcgag aggatcaaaa ctttgcagga
    20941 aggaaggttt ttgctcgccg aactgtagag ccagagaaat cgtatttaac gccttctccc
    21001 attgttcgaa ttcgatactt tcatgccaga tatctgccca ttcttcttta tcttccggcg
    21061 cgacggtaca ttgtaaaata ccaatcagca tttgccatgc cgccccctga aagtcagccc
    21121 gaggataggc aagatcctga atgcggttat ccagaagatc gcgtaatgat attttctttt
    21181 tatcgccgtt tgagaatatg acgggaagcc atttctcttt ggttaaatcc atacctttac
    21241 tcctgcaggg ctatttatta agccaatttg gaatattacc tacctataag tagattccgt
    21301 cctgaggtat ctcttaaata ctgtcatcgg agttatacta cattttctcg aagacgaaaa
    21361 tata
//
LOCUS       DAJVSD010000053        20929 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.053, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000053 DAJVSD010000000
VERSION     DAJVSD010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 20929)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20929)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20929
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.053"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(287..898)
                     /locus_tag="OQP62_001646"
     CDS             complement(287..898)
                     /locus_tag="OQP62_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000261098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721228.1"
                     /translation="MVVLLLLLAHMGDILDRHHRRDAYQAQQVAEETLLRKIDTTDDR
                     VFLNHLMSQAMQPQNAGDWGTNRRIEHLAKRISPFDIAGGTEKIWLVLAIDRLNRSAV
                     GTFASWFIGDSVQAKQYRHQLLQNNPLLDLLNRVFNDSTADEQTFLQQQLLARDICTS
                     LISVVPELLTDELYAQAVAFDNSNKPEPFSWQFEFDVFYHQKK"
     gene            complement(1052..1198)
                     /locus_tag="OQP62_001647"
     CDS             complement(1052..1198)
                     /locus_tag="OQP62_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001222143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721229.1"
                     /translation="MRINEEGWRLLTFWMFTTGGYLILLFVVICLAFLFQTPRRVLLW
                     IALP"
     gene            complement(1219..2631)
                     /gene="ftsP"
                     /locus_tag="OQP62_001648"
     CDS             complement(1219..2631)
                     /gene="ftsP"
                     /locus_tag="OQP62_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsP"
                     /protein_id="HCS1721230.1"
                     /translation="MSFSRRQFLQASGIALCAGAIPLRANAAGQQQPLPVPPLLESRR
                     GQPLFMTLQRAHWSFTQGTRAPVWGVNGRYLGPTIRVWKGDDVKLIYSNRLAENVSMT
                     VAGLLVPGPLMGGPARMMSPNADWAPVLPIRQSAATLWYHANTPNRTAQQVYNGLAGM
                     WLVEDDISKTLPIPNHYGVDDFPVIIQDKRLDNFGTPEYSEPGSGGFVGDTLLVNGAQ
                     SPYVEVSRGWVRLRLLNASNSRRYQLQMSDGRALHVISGDQGFLPAPVSVKQLSLAPG
                     ERREILVDMTNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTD
                     NLPMRLLPTEIMSGAPVRSRDISLGDDPGINGQLWDVNRIDITAQQGTWERWTVRADM
                     PQSFHIEGVSFLIRNVNGAMPFPEDRGWKDTVWVDGQVELLVYYGQPSWPHFPFYFNS
                     QTLEMADRGSIGQMLVNPAS"
     gene            complement(2705..3442)
                     /gene="plsC"
                     /locus_tag="OQP62_001649"
                     /gene_synonym="parF"
     CDS             complement(2705..3442)
                     /gene="plsC"
                     /locus_tag="OQP62_001649"
                     /gene_synonym="parF"
                     /EC_number="2.3.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-3-phosphate O-acyltransferase"
                     /protein_id="HCS1721231.1"
                     /translation="MLYIFRLIVTVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGR
                     LAPLFGLKVECRKPADAENYGNAIYIANHQNNYDMVTAANIVQPPTVTVGKKSLLWIP
                     FFGQLYWLTGNLLIDRNNRAKAHSTIAAVVNHFKKRRISIWMFPEGTRSRGRGLLPFK
                     TGAFHAAIAAGVPIIPVCVSNTSNKVNLNRLNNGLVIVEMLPPVDVSEYGKDQVRELA
                     AHCRALMEQKIAELDKEVAEREATGKV"
     gene            complement(3699..5957)
                     /gene="parC"
                     /locus_tag="OQP62_001650"
     CDS             complement(3699..5957)
                     /gene="parC"
                     /locus_tag="OQP62_001650"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HCS1721232.1"
                     /translation="MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRR
                     IVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG
                     QGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPAR
                     LPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTE
                     AEIIIPRAEIRKIYENGRGSVRMRAVWTKEDGAVVITALPHQVSGAKVLEQIAAQMRN
                     KKLPMVDDLRDESDHENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGL
                     DGRPAVKNLLEILTEWLAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEI
                     IRNEDEPKPALMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI
                     LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMG
                     WVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQ
                     GEPLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITL
                     PENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKG
                     DDGLAHLYVLPPQSTLTIHVGKRKIKLRPEELQKVVGERGRRGTLMRGLQRIDRIEID
                     SPHRVSHGDSEE"
     gene            complement(6068..6934)
                     /locus_tag="OQP62_001651"
     CDS             complement(6068..6934)
                     /locus_tag="OQP62_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HCS1721233.1"
                     /translation="MNDLISAAYSERLRRVCDHIERHLDEPLSLEALSRMAHSSPFHF
                     HRQFTVWSGLPLYRYIQWLRLRRASWRLAFNPQDKVIDIALDAGFQNPESFTRAFKTA
                     FGQSPCRFRQSPDWLAWHQRVPKLALQEQHVMDVKIVEFPPTRVAMLTHLGHPDKVNA
                     SAAKFIAWRRETGQSPIASSQTFGIAWHDPQTTPPAQFRFDICGSVRQPIAENDVGVV
                     NSEIPGGRCAVVRHQGSLDSLPESVWYLFREWLPASGETLRDFPVFFQYLNFVHEVAE
                     HELLTDIYLPLR"
     gene            complement(7006..7398)
                     /locus_tag="OQP62_001652"
     CDS             complement(7006..7398)
                     /locus_tag="OQP62_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgiW/YdeI family stress tolerance OB fold
                     protein"
                     /protein_id="HCS1721234.1"
                     /translation="MKKLAAIVAVMALCSTPVLAAQQGGFSGPSATQTQGGGFVGPNG
                     SSTTVESAKSLRDDAWVTLRGNIVERISDDLYVFKDATGTINVDIDHKRWNGLTVTPQ
                     DTVEIQGEVDKDWNSVEIDVKQIRKVNP"
     gene            7550..8209
                     /gene="qseB"
                     /locus_tag="OQP62_001653"
     CDS             7550..8209
                     /gene="qseB"
                     /locus_tag="OQP62_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator QseB"
                     /protein_id="HCS1721235.1"
                     /translation="MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAP
                     YDAVILDLTLPGMDGRDILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKP
                     FALIEVAARLEALVRRASGQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLEL
                     LLRNKGRVLPRKLIEEKLYNWDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTLGD
                     A"
     gene            8206..9555
                     /gene="qseC"
                     /locus_tag="OQP62_001654"
     CDS             8206..9555
                     /gene="qseC"
                     /locus_tag="OQP62_001654"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     QseC"
                     /protein_id="HCS1721236.1"
                     /translation="MKLTQRLSLRVRLTLIFLILVSITWAISSFVAWRKTTDNVDELF
                     DTQLMLFARRLSTLDLNELNAPQRMAHTPKKLKHGHIDDDALAFAIFSADGKMLLHDG
                     DNGQDIPYRYRREGFDNGYLKDDNDLWRFLWLNSADGKYRIVVGQEWDYREDMALAIV
                     AAQLTPWLIALPFMLLILLLLLHRELRPLKKLAQALRFRSPESETPLDAKGVPSEVRP
                     LVEALNQLFSRIHSMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSGDDPLSRDKAL
                     TQLHAGIDRATRLVDQLLTLSRLDSLNNLQDVAEISLEELLQSAVMDIYHPAQQANID
                     VRLQLNAHDVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLHARSFTVRDNGPGV
                     APEILTHIGERFYRPPGQSVTGSGLGLSIVRRIATLHGMTVSFGNAAEGGFEAVVRW"
     gene            9662..10242
                     /locus_tag="OQP62_001655"
                     /pseudo
     CDS             9662..10242
                     /locus_tag="OQP62_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462094.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
     gene            10274..10588
                     /locus_tag="OQP62_001656"
     CDS             10274..10588
                     /locus_tag="OQP62_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HCS1721237.1"
                     /translation="MLTVIAEIRTRPGQHHRQAVLDQFAKIIPTVLKEEGCHGYAPMV
                     DHAAGVSFQTLAPDSIVMIEQWESVAHLEAHLQTPHMKAYSDAVKDDVLEMNIRILES
                     GV"
     gene            complement(10713..12605)
                     /gene="parE"
                     /locus_tag="OQP62_001657"
     CDS             complement(10713..12605)
                     /gene="parE"
                     /locus_tag="OQP62_001657"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HCS1721238.1"
                     /translation="MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSV
                     DEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN
                     KNYQFSGGLHGVGISVVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRN
                     TGTSVHFWPDESFFDSPRFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSEQRWCYQDG
                     LNDYLGEAVNGLPTLPEKPFIGNFNGETEAVDWALLWLPEGGELLTESYVNLIPTMQG
                     GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK
                     ERLSSRQCAAFVSGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLRAAKKVVRKKLT
                     SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV
                     SSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVR
                     HFRALVKNGHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGL
                     GEMNPMQLRETTLDPNTRRLVQLTISDEDDQRTNAMMDMLLAKKRSEDRRNWLQEKGD
                     LADLDV"
     gene            complement(12633..13214)
                     /gene="yqiA"
                     /locus_tag="OQP62_001658"
     CDS             complement(12633..13214)
                     /gene="yqiA"
                     /locus_tag="OQP62_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase YqiA"
                     /protein_id="HCS1721239.1"
                     /translation="MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYP
                     ADAAELLESLVLEHGGAPLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDY
                     LGQNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYA
                     SCRQTVTEGGNHAFTGFEDYFNQIVDFLGLHSC"
     gene            complement(13214..14041)
                     /gene="cpdA"
                     /locus_tag="OQP62_001659"
     CDS             complement(13214..14041)
                     /gene="cpdA"
                     /locus_tag="OQP62_001659"
                     /EC_number="3.1.4.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-AMP phosphodiesterase"
                     /protein_id="HCS1721240.1"
                     /translation="MESLLTLPLAGEARVRILQITDTHLFAEKHETLLGVNTWESYQA
                     VLEAIRAQQYEYDLIVATGDLAQDQSAAAYQHFAEGIASFRAPCVWLPGNHDFQPVMY
                     SALQEAGISPAKRVLIGEQWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERQTL
                     LLLHHHPLPAGCSWLDQHSLRNAGELDSVLANFPRVKYLLCGHIHQELDLDWNGRRLL
                     ASPSTCVQFKPHCANFTLDTIAPGWRTLELQANGVLETEVHRLQDTRFRPDTASEGY"
     gene            complement(14066..14488)
                     /locus_tag="OQP62_001660"
     CDS             complement(14066..14488)
                     /locus_tag="OQP62_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1249 family protein"
                     /protein_id="HCS1721241.1"
                     /translation="MKRYTPDFPEMMRLCETNFSQLRRLLPRNDAPGETVSYQVGNVQ
                     YRLTIVELTRYTTLVTIEQTAPAITYWSLPSLTVRLYHDAMVAEVCSSQQIFRFKARY
                     DYPNKKLHQRDEKHQINQFLADWLRFCLAHGAMAIPVY"
     gene            complement(14485..15117)
                     /gene="nudF"
                     /locus_tag="OQP62_001661"
     CDS             complement(14485..15117)
                     /gene="nudF"
                     /locus_tag="OQP62_001661"
                     /EC_number="3.6.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribose diphosphatase"
                     /protein_id="HCS1721242.1"
                     /translation="MRKSDNLPVTFTKSDVEIIARETRYRGFFSLDVYRFRHRLFNGE
                     MSGEVKREIFERGHAAVLLPFDPERDEVVLVEQIRIAAYDTSVTPWLLEMVAGMIEEG
                     ETIEAVARREAMEEAGLTVGRTRPVISYLASPGGTSERSSILVGEVDATTAVGIHGLA
                     DENEDIRVHVVSREQAYQWVEEGKIDNAAAVIALQWLQLHHQELKNEWKK"
     gene            15318..16793
                     /gene="tolC"
                     /locus_tag="OQP62_001662"
     CDS             15318..16793
                     /gene="tolC"
                     /locus_tag="OQP62_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462101.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane channel protein TolC"
                     /protein_id="HCS1721243.1"
                     /translation="MQMKKLLPILIGLSLSGFSTLSQAENLMQVYQQARLSNPELRKS
                     AADRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINSNETSASLQLTQTLFDM
                     SKWRGLTLQEKAAGIQDVTYQTDQQTLILNTANAYFKVLNAIDVLSYTQAQKEAIYRQ
                     LDQTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNNLDNAVEELRQVTGNYYPELA
                     SLNVEHFKTDKPKAVNALLKEAENRNLSLLQARLSQDLAREQIRQAQDGHLPTLNLTA
                     STGISDTSYSGSKTNSAQYDDSNMGQNKIGLNFSLPLYQGGMVNSQVKQAQYNFVGAS
                     EQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVD
                     VLDATTTLYDAKQQLANARYTYLINQLNIKYALGTLNEQDLLALNSTLGKPIPTSPES
                     VAPETPEQDAAADGYNAHSAAPAVQPTAARANSNNGNPFRH"
     gene            17006..17677
                     /locus_tag="OQP62_001663"
     CDS             17006..17677
                     /locus_tag="OQP62_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1190 family protein"
                     /protein_id="HCS1721244.1"
                     /translation="MKRTKSIHHASFRKSWSARHLTPVALAVTAVFMLAGCEKSDETV
                     SLYQNADDCSAANPGKSAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPA
                     QAGMAPENQAQAQQSSGSFWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKY
                     TDAAGKNYGAAQPGRTMTVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSAAGTST
                     RSMGG"
     gene            17683..18846
                     /locus_tag="OQP62_001664"
     CDS             17683..18846
                     /locus_tag="OQP62_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HCS1721245.1"
                     /translation="MERVSITERPDWRDKATEYGFNFHTMYGEPYWCEDAYYKLTLAQ
                     VEKLEDVTAELHQMCLKVVERVIASDELMTKFRIPKHTWGFVRQSWQTQQPSLYSRLD
                     LAWDGIGEPKLLENNADTPTSLYEAAFFQWIWLEDQINAGNLPEGSDQFNSLQEKLIE
                     RFAELREQYGFQLLHLTCCRDTVEDRGTIQYLQDCAAEAEIATEFLYIDDIGLGEKGQ
                     FTDLQDQVIANLFKLYPWEFMLREMFSTKLEDAGVRWLEPAWKSIISNKALLPLLWEM
                     FPDHPNLLPAYFAEDEHPPMDKYVVKPIFSREGANVSIIENGKTIESVEGPYGEEGMI
                     VQQFYPLPKFGDSYTLIGSWLINDQPAGIGIREDRALITQDLSRFYPHIFVEG"
     gene            complement(18908..19696)
                     /gene="ygiD"
                     /locus_tag="OQP62_001665"
     CDS             complement(18908..19696)
                     /gene="ygiD"
                     /locus_tag="OQP62_001665"
                     /EC_number="1.13.11.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001356237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,5-DOPA dioxygenase extradiol"
                     /protein_id="HCS1721246.1"
                     /translation="MSLTCMPALFLGHGSPMNVLDDNDYTRAWRRLGEALPRPQAIVV
                     VSAHWYTRGTGVTAMERPQTLHDFGGFPQALYDMHYPAPGSPALAQRLVELLAPVPVA
                     LDKEAWGFDHGSWGVLIKMYPNADIPMVQLSVDSTKPAAWHFEMGRKLATLRDEGVML
                     VASGNVVHNLRTVRWHGDNIPYPWAASFNDFVKANLTWQGPVEQHPLVNYLQHEGGAL
                     SNPTPEHFLPLLYVLGAWDGKEPITIPVDGIEMGSISMLSVQVG"
     gene            19837..20610
                     /gene="zupT"
                     /locus_tag="OQP62_001666"
     CDS             19837..20610
                     /gene="zupT"
                     /locus_tag="OQP62_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HCS1721247.1"
                     /translation="MSVPLILTLLAGAATFIGAFLGVLGQKPSNRVLAFSLGFAAGIM
                     LLISLMEMLPAALDTEGMSPVLGYGMFIIGLLGYFGLDRLLPHAHPQDLVQKRQQPLP
                     GSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPV
                     YAATGSKRTAIFWAGISGMAEILGGVLAWLILGSLVSPIVMAAIMAAVAGIMVALSVD
                     ELMPLAKEIDPNNNPSYGVLCGMSIMGLSLVILQTIGIG"
BASE COUNT         4945 a         5880 c         5344 g         4760 t
ORIGIN      
        1 caaatgcgcc gacaattaac ctcaataata caacgccata aataccccac gcgctcatca
       61 atattactga atcccacatc atccacgcaa atgattcacc cataaagtat ccttactttc
      121 catgctcatt actgagttca aattcctcgt tcctattttc cgataacaca gcgagctaaa
      181 cgcactaata actatagtaa atacaatgat tgtatatatt gcccggcacg gaggatatta
      241 tcatcaacaa caaactccat ccgtttccca aattcattat tgcccgctat tttttctgat
      301 gataaaacac atcaaattca aactgccatg agaaaggttc cggtttgttg ctattatcaa
      361 aggcaacggc ttgtgcatac agttcgtccg tcaataattc cggcacgacg ctaatcaaac
      421 tggtacaaat atctcgcgcc aaaagttgtt gttgcagaaa agtttgttca tcagccgtac
      481 tatcattaaa aacacgattc agtaggtcca ataatggatt gttttgtaag agctgatgcc
      541 gatattgctt tgcctgtaca gaatcgccaa taaaccagga ggcaaacgtc ccaacagcag
      601 aacgattaag ccggtcgatg gccaaaacca accaaatttt ttcagttccg cccgcaatat
      661 caaaagggga aatgcgtttt gcgagatgct caatccgcct attcgtcccc caatcccctg
      721 cgttttgcgg ctgcatggct tgcgacatca aatgatttaa aaaaacgcgg tcatcagtcg
      781 tatcgatttt tcgtaacagc gtttcttccg ccacctgctg tgcctgatag gcatcgcgcc
      841 gatgatgcct atcgagaata tcccccatgt gcgccaacaa cagcagcaat acgaccacat
      901 agcacccggc ccaaaggtgg tgtggttggc gtaatcggtg gctaaacagt agcgccaaca
      961 ataaactaag ccccagcatc caccctgcac taatcggaaa gaaaagcgtt tcatcatccg
     1021 cagcaaacca tagcaaaaga accagcgcaa tctatggcaa agcaatccac agcaacacgc
     1081 gacgaggcgt ttggaacaaa aaagccaggc aaataacaac gaagagcaga ataagatagc
     1141 cgcctgtagt aaacatccag aacgtcagta gccgccatcc ctcttcattg attctcatcg
     1201 aatatccctg gttcgccttt acgacgccgg attcaccagc atttgcccaa tcgagccgcg
     1261 atcagccatt tccagcgtct ggctgttgaa atagaacggg aagtgcggcc aggacggctg
     1321 accgtagtag accagcaatt cgacttgccc atccacccag acggtatctt tccagcctct
     1381 atcttccggg aacggcatag cgccgttgac gttacgaatc aggaaagaga cgccctcaat
     1441 atggaacgac tgcggcatat cggcgcgtac cgtccagcgc tcccaggtgc cttgttgggc
     1501 ggtaatatca atgcgattca catcccacag ttggccgtta atccccggat cgtcgccaag
     1561 actgatgtcc cgactgcgga caggcgcacc gctcatgatc tccgtcggca acagacgcat
     1621 cggcagatta tcggtcacca gcggcagcaa tccggttggc cgtaacgtca gcaccagggt
     1681 cgaaaccaga atactggaag gctcaaagaa accgcgaatc cgatcgacta tgctggccgc
     1741 ttccccgcag gtgatcgaga cttcgtcgcc gttggtcata tcaaccagga tttcacgtcg
     1801 ctcgccgggc gccagtgaca actgtttgac ggaaaccggc gcaggtaaaa agccctgatc
     1861 gcctgaaatc acatgcagcg cccggccatc gctcatctga agctgatagc gccgcgagtt
     1921 cgaggcgttc aacaaccgta accgcaccca gccgcgggac acttcgacat aggggctttg
     1981 cgcgccgttc accagcagcg tatcgccgac aaaaccaccg ctgcccggtt cgctgtactc
     2041 cggcgtccca aagttatcca gccgtttatc ctggataata acgggaaaat catccacgcc
     2101 gtaatggttc ggaatgggca gcgttttact gatgtcatct tcgaccagcc acattccggc
     2161 caggccgtta tacacctgct gcgcagtgcg gttaggcgtg ttagcgtgat accacagcgt
     2221 cgcggcgctc tgacgaatcg gcaacaccgg cgcccagtcc gcgttcggcg acatcatacg
     2281 cgccgggcca cccatcagcg gccccggcac cagtaaacca gcaaccgtca tggagacatt
     2341 ttccgccagg cggttgctat agatgagttt aacgtcatcg cctttccaga cgcggattgt
     2401 cggccccaga taacgaccgt tcactcccca gaccggcgcg cgcgtgcctt gcgtaaagga
     2461 ccagtgcgct cgctgtagcg tcataaacaa cggctgcccg cgacgggact ccagcaacgg
     2521 cggaacaggc aacggctgtt gctgaccggc agcattcgcc ctgaggggaa tcgcgcctgc
     2581 acatagtgcg attcccgatg cctgaagaaa ctgacgccga ctgaatgaca tataagctcc
     2641 atgtaaaaca ggctaaagag ttgtgcctga aaaaatgatt tctacaataa cagagtaagg
     2701 ctgcttaaac cttaccggtc gcttcacgtt ccgcaacctc tttatcaagt tccgcgattt
     2761 tttgctccat taacgcacgg cagtgggccg ccagctcacg aacctgatct ttaccatatt
     2821 cgctgacgtc gactggcggc agcatttcca caataaccag tccgttgttc aggcggttta
     2881 gattgacttt gttagaggtg ttggaaacgc agacaggaat gatcggcaca ccagccgcga
     2941 tagccgcatg aaacgcgccg gttttaaacg gcagcagacc gcgtccccgg ctacgcgtac
     3001 cttcagggaa catccagata gaaatacggc gctttttaaa atggttaact actgccgcaa
     3061 tggtgctatg cgctttggcg cggttattac ggtcaatcaa cagattaccg gtcagccagt
     3121 acagttgccc aaaaaacggg atccaaagca ggcttttttt ccccaccgtc accgttggcg
     3181 gctgcacaat attcgccgcc gtgaccatat cataattatt ctgatggtta gcaatataga
     3241 tagcattgcc atagttttcc gcatcggcgg gtttgcggca ctccactttc aggccaaaca
     3301 gcggggccag acgaccgaac atatgtccaa acgtcgccac gtgttttggg ttacgtgggc
     3361 tgaaaaggca gtaaatagaa ccgaaaacac agaccagaat ggagtaaata acggtaacaa
     3421 taagacgaaa aatatatagc ataacaacct ctgaaggcct aagagcccgg cattctacgt
     3481 cacctgaaat tcaggttagg attttggtaa gtgtggctct ctggaaaaac gtattgttaa
     3541 tcgcaatgca cgaataaaca acggttttac gggaaatttt aatgttaatc cgatctgaaa
     3601 ccgtaggccg gataagacgc tactgcgtcg tcatccggca acggcagagc gccggatggc
     3661 ggcttagatg ccttgtccgg cctacgggcg cccctgtctt actcttcgct gtcgccatga
     3721 cttacgcgat gcggcgaatc aatctcaatg cgatcgatac gctgcaggcc gcgcattaat
     3781 gtgccacggc gtccgcgttc accgaccacc ttttgtaact cttcagggcg cagtttgatt
     3841 ttgcgcttcc cgacatggat agtcagagtg ctttgtggcg gcagcacgta caggtgcgcc
     3901 agtccatcat cgcctttcgc cgcttccgca gaggggatat taatgatctt attgcctttg
     3961 cctttcgaca gctgcggcag agagtctacc gggaacatca acatccgtcc ggcctgggta
     4021 atcgccagca gcatatcgtg ctcgtcttta atcaccagcg gcggcatgac gtgcgcattt
     4081 tccggcagtg taatcaacgt cttaccggca cggttacggg caaccagatc gttaaacgta
     4141 caaacgaagc cgtagcccgc atccgacgcc atcagcagtt tctggtcatc gccttccatc
     4201 agcatatgct ctacggtcgc ccccggcggc agcgtgagtt tgccggtcag cggctcgccc
     4261 tgcccacgcg ccgagggaag cgtaatggga tcaatagcat agctgcgccc ggtggtatca
     4321 ataaacacca ccggttgatt gctcttacct ttcaccgcgg ctttaaagct gtcgcccgct
     4381 ttatagttaa gccccggcgc atcaatatca tgacctttgg cgctgcgcac ccagcccatc
     4441 tgcgacagca cgatagtcac cggttcggac ggcagcatat cgtgttcgct catcgcttta
     4501 gcttcttcgc gctcacgcag cggagaacgg cgatcgtcgc cataggcatc ggaatctgcc
     4561 tgtagctctt ttttcagcaa ggtattcatt ttgcgttcgg acgcgagaat gccctgcaac
     4621 tggtcacgct ctttttccag ctcgtcctgc tcaccgcgaa ttttcatctc ttccagtttg
     4681 gcgagatgac gcagtttcag ttcgagaatc gcttccgcct gggtttcgct gatgccgaaa
     4741 cgcgacatca gcgcgggttt cggctcatcc tcgttacgga taatctcgat cacttcatcg
     4801 atgttgagaa acgccaccag caaaccttcg aggatatgca ggcgcttaag cactttctcc
     4861 agacgatagt tcagacgacg gcgcaccgtg tcgcggcgga acgccagcca ctcggtgagg
     4921 atctccagca ggtttttcac cgccggacga ccatccagac cgatcatgtt caggttaata
     4981 cggtagcttt tttccagatc ggtggtggcg aacagatggt tcatcacctg ttccatatcc
     5041 acacggttgg agcgtggcac aatcactaaa cgcgtcgggt tttcgtgatc cgattcatcg
     5101 cgcaggtcgt ccaccatcgg cagtttttta ttgcgcatct gcgcagcaat ctgctccagc
     5161 acttttgcgc cagatacctg atgcggcaac gcggtgatca ccacggcgcc gtcttctttg
     5221 gtccataccg cgcgcatacg cacggagcca cgcccatttt cgtaaatttt acgaatttcc
     5281 gcacgaggga taatgatctc cgcttcggtc gggtaatccg gcccctggac gatatccagc
     5341 aactgatcca gcgtcgtttt cggctgctca atcagcgtaa tcgccgcttt cgcgacttcg
     5401 cgcaggttat gcggcggaat atctgttgcc atgcccaccg caataccggt ggtgccgttc
     5461 agcaggatgt tcggcagacg cgccggtaac attttcggtt cctgcatggt gccgtcgaag
     5521 tttggcaccc agtccgcagt cccctgaccg agttcgctta acagcagctc ggcgtatttg
     5581 gacaggcggg attcggtata acgcatcgcc gcgaatgact tcggatcatc cggcgcgccc
     5641 caattcccct ggccatcgac cagcgggtaa cggtaagaga acggctgcgc catcagcacc
     5701 atggcttcat agcaggcgct gtcgccatgc gggtgatact tacccagtac gtcgccaacg
     5761 gtacgggcgg attttttaaa tttagcggtg gcgttcagcc ccagctctga catcgcatag
     5821 acgatgcggc gctgtaccgg cttcaggccg tcgccaataa acggcaacgc acgatccatg
     5881 atcacgtaca tggagtagtt taagtaggcg ttttccgtaa attcatgtag cgcaaggcgc
     5941 tctgccatat cgctcattaa caggggatcc tcaatctgca tgctgaccgt tcggacggca
     6001 atattgccgc agataatacc ctatctcacg gtctgagtca caaaccgtga gacaggttgc
     6061 gaggaagtta acgaagcggc agatagatat ccgtcagcag ctcatgttcc gccacctcat
     6121 ggacgaaatt caggtactgg aagaagaccg gaaaatcgcg cagcgtctcg ccgctggccg
     6181 gtagccattc gcggaataaa taccacacgc tctccgggag gctgtcgagc gatccctgat
     6241 ggcgcaccac cgcgcagcgc ccgccaggaa tctcgctatt caccacgcca acgtcatttt
     6301 cggctatcgg ctggcggacg ctgccgcaga tatcaaagcg gaattgagcc ggcggcgtcg
     6361 tctgcgggtc gtgccaggca ataccaaaag tttgactgct ggcaatcggc gactggcccg
     6421 tttcgcgtcg ccatgcaata aatttcgccg cgctggcgtt gaccttatcc ggatgcccca
     6481 gatgcgtcag catcgcgacg cgggtaggag gaaattcaac gatttttacg tccatgacat
     6541 gctgctcctg taacgcaagt ttaggaacgc gttggtgcca ggccagccag tccggcgatt
     6601 gccgaaaccg gcacgggctt tgaccaaacg cggttttgaa agcacgtgtg aacgactccg
     6661 gattctgaaa tccggcatcc agcgcgatat cgataacttt atcttgcgga ttaaacgcca
     6721 gccgccatga cgcccggcgc aaacgcagcc actggatata gcgatagagc ggaagcccgc
     6781 tccagacggt aaactgccgg tgaaaatgaa acggcgagct gtgcgccatc cggcttaacg
     6841 cctcaagcga cagaggctca tccagatgac gctcaatgtg gtcgcaaacg cgccgcagac
     6901 gttcggaata agccgcgctg atcaggtcat tcatcactgc ctccttgtgg cctattctgc
     6961 ccaccgggcg gctgtgaatc ctgaccgatc ttgcgcaatg tgggattacg gattcacttt
     7021 acgaatctgt ttcacgtcga tttcgacaga gttccagtct ttatccactt caccctgaat
     7081 ttcaacggta tcctgcgggg ttacggtcag gccgttccag cgcttgtggt caatgtccac
     7141 attgatagta ccggtcgcat ctttaaacac atacaggtcg tcggaaatgc gctcgacgat
     7201 attcccgcgc agcgttaccc acgcatcgtc acgcagcgat ttagcgctct ctaccgtcgt
     7261 gctgctgccg ttcgggccga caaatccgcc gccctgcgtt tgcgtcgccg acgggccgga
     7321 gaaaccgccc tgctgagccg ccagaaccgg ggtagaacac agtgccataa cggcaacgat
     7381 tgcagctaat tttttcatga ttacttttcc ctttcatgtc gtttcagatc catttaataa
     7441 ggtaatcctt aacaacttct taaggcaaaa aaagattctt tttttctgta catcgcctgc
     7501 ggcgacaagg ttaactgacg gcaacgcgag ttaccgcagg gaagaacaga tgcgaatttt
     7561 actggtagaa gatgacacac ttattggcga tggcataaaa gcaggtctga gtaaaatggg
     7621 tttcagcgtc gactggttta ccgagggacg tccgggcaaa gaggcgcttt acagcgcgcc
     7681 ttatgatgcg gtcattttag atttaacgct gccaggaatg gacggacggg atattttgcg
     7741 cgaatggcgc gaaaagggta aacaggaacc agtactgatc ctgacggcgc gcgacgcgtt
     7801 agcagagcgc gtcgaggggc tacgtctggg cgccgatgac tatttatgta aacctttcgc
     7861 gctcattgag gtcgccgccc gtctggaggc gctggtacgc cgcgccagcg gtcaggccag
     7921 tagcgaattg cgccacggcc aggtgacgct caatccaggc aatctcgtcg cgacgcttgc
     7981 cggcgaaccg ctggccctaa aaccaaaaga gttcgcgttg ctggaactct tactgcgcaa
     8041 caaaggtcgc gtgctaccgc gcaagcttat tgaagagaag ctgtataact gggatgacga
     8101 cgtgtccagc aatgcagtgg aagtccatgt tcatcattta cgccgcaagc tcggcagcga
     8161 atttattcgc accgtacacg gcatcggcta caccctgggt gacgcatgaa attgacgcaa
     8221 cgtctcagcc tgcgcgtcag gctgacgctt attttcctga ttctggtctc catcacctgg
     8281 gcaatttcca gttttgtggc ctggagaaag acgacggata atgtcgatga gctgtttgac
     8341 acacagttga tgttgttcgc cagacggctt agcaccctcg atcttaacga gctcaacgcc
     8401 ccgcagcgca tggcgcatac gccaaagaaa ttaaaacatg ggcatatcga tgacgatgcg
     8461 ctggcgttcg ccatcttttc cgctgacggc aaaatgttgc tgcatgatgg cgacaacggc
     8521 caggatattc cgtatcgcta tcgccgggaa ggtttcgaca atggctatct gaaggatgac
     8581 aacgacctct ggcgtttttt gtggttgaac tcggcggacg gcaagtatcg tatcgtcgtc
     8641 ggtcaggagt gggattaccg cgaagatatg gcgctggcga tcgtggcggc gcaattaacg
     8701 ccgtggctga tcgcccttcc cttcatgctg ctgattttat tactcctgct tcaccgcgag
     8761 ctcagaccgt tgaaaaaact ggcgcaggcg ctgcgcttcc ggtcgccgga atcggaaacg
     8821 ccgctcgacg ccaaaggcgt accgagcgag gttcgcccac tggtcgaagc gcttaatcag
     8881 ctttttagcc gcatccactc catgatggtg cgcgaacggc gatttacctc cgacgccgcc
     8941 catgaattgc gcagcccgct ggccgcgctg aaagtacaaa ccgaggtggc gcagctctcg
     9001 ggcgacgatc cgctatcgcg tgataaagcg ctgacccagc tccatgcggg gatcgatcgc
     9061 gccacgcggc tggtcgatca gctactgacg ttatcgcgtc tcgactcgct caataatttg
     9121 caggatgtag cggagatttc gctggaagag ctgctgcagt ccgcggtaat ggatatttat
     9181 catccggcgc agcaggcgaa tatcgacgtg cgtttacagc ttaacgccca tgacgtcata
     9241 cgtaccggcc agccgctact cttaagcctg ttagtgcgta acctgctgga taatgcgatt
     9301 cgctacagtc cgcagggcag cgtcgtcgac gttaccttac atgcccgcag cttcaccgtc
     9361 agagataatg gccccggcgt agcgccagag attctaacgc atatcggcga gcgtttttac
     9421 cgcccgccag gccaaagtgt gaccggcagc ggtctgggat tatcaatcgt ccgccgcatc
     9481 gctacgctgc acggcatgac ggtgtcgttt ggcaacgccg cggaaggtgg atttgaggcc
     9541 gtagtacgct ggtagcagag atttttgcca aaaacgcaaa agactttgca cattttgcta
     9601 atttcaccgc accgcccgtc agcgtagaat cagcagcaaa cgcatttctt gaggacacaa
     9661 aatgagtaac atcctgatta tcaacggggc gaaaaaattc gcgcactcca acggccagtt
     9721 gaatgacacc ctgaccgaag ttgccgatgg gctgctgcgc gatctgggtc atcaggttaa
     9781 gatcgtccgc gccgacagcg actatgacat taaagaagag gtgcagaatt tcgtctgggc
     9841 tgacgtggtg atttggcaga tgccaggctg gtggatgggc gcgccatgga cagtaaaaaa
     9901 tatatggatg atgtctttac cgaaggtcac ggcacgctct atgccagcga tggccgcacg
     9961 cgttccgatg ccgctaaaaa gtacggttcc ggcggtctgg tgcaggggaa aaaatatatg
    10021 ctgtcactga cgtggaacgc gccgatggaa gcatttaccg aaaaagatca gtttttccac
    10081 ggcgtaggcg tagatggcgt ctatctgcca ttccataaag ccaaccagtt cctgggcatg
    10141 gacgcgctgc caacgtttat tgccaacgac gtgattaaaa tgccggatgt tccgcgctat
    10201 accgcagaat atcgcaagca tcttagcgaa atttttgctt aactggtcat cctggaatta
    10261 gaaggagtta accatgctta ccgtcattgc cgaaattcgc acgcgtccgg gccaacatca
    10321 ccgtcaggcc gtcctcgatc agtttgcgaa aattattcca accgttctta aagaagaggg
    10381 gtgccacggt tacgcgccga tggtggatca tgccgcgggc gtgagttttc agactctggc
    10441 gcctgactcg atcgtgatga ttgaacagtg ggaaagcgtt gcgcaccttg aagcgcatct
    10501 gcaaaccccg catatgaaag cctatagcga cgcggtaaaa gacgatgtgc tggaaatgaa
    10561 tattcgtatt ctggaatccg gcgtttaagt tattaccctc gtctgacgtc gccctgatgc
    10621 gatgcgcaag tgtcgccatc aggctgcgac gtcatgtcgg attctcttat ccggcctgcg
    10681 gcgcgcagac cggataaagc gtgcaacaat cgttacacgt cgagatccgc gagatcgcct
    10741 ttttcctgta gccagttgcg tcgatcttca gaacgtttct tcgccagcag catatccatc
    10801 atcgcattag tacgctgatc gtcttcatcg ctaatggtga gctgcaccag gcggcgagta
    10861 ttcggatcaa gcgtggtttc gcgtaactgc atcgggttca tttcacccag gcctttgaaa
    10921 cgctggacgt tcggcttgcc tttcttacgc ttcagttgtt ccagtacgcc cgccttctct
    10981 tcttccgtca gcgcgtaata gacctcttta cccaaatcga tacggtatag cggcggtagc
    11041 gcgacgtaga catgaccatt cttcaccagc gcgcggaagt gtctgacaaa cagcgcgcaa
    11101 agcagagtag cgatatgcaa accatcggag tccgcatccg ccaggataca gatcttgccg
    11161 tagcgcagct gactcagatc gtcgctgtcc ggatcgatac cgatcgccac ggaaatatca
    11221 tgcacctctt gcgaggccag cacttcatcg gaagagactt cccaggtgtt aaggatctta
    11281 cctttgagcg gcatgatcgc ctgatattcg cgatcgcgcg cctgcttggc ggaaccgcct
    11341 gccgaatccc cttccacaag gaacagctcg gttcgattaa gatcctgcgc ggtacagtcc
    11401 gccagtttcc ccggcaacgc cggaccgctg gtgagttttt tgcgtaccac tttttttgcg
    11461 gcgcgcagtc gccgctgcgc gctggcaatc gccatctctg ccagttgttc cgccgcctgc
    11521 acgttctggt tcagccacag gctgaaggca tctttcacca cgccggaaac aaatgccgca
    11581 cattgacgcg acgacagacg ctctttggtc tgcccggcaa attgcgggtc ctgcattttc
    11641 acggagagca cataagcgca gcgatcccag atatcttccg ccgacagttt gacgccgcgc
    11701 ggcagaatat tgcggtattc gcaaaattcg cgcatcgcgt cgagcaggcc ctggcgcaga
    11761 ccgttgacgt gcgtcccccc ctgcatggtc gggatcaggt tgacgtagct ttccgtcagt
    11821 aattcgccgc cttccggcag ccacaatagc gcccagtcaa ccgcttccgt ttcaccgtta
    11881 aaattaccga taaacggctt ttccggcagc gtcggcaggc cgtttaccgc ttcgcccaga
    11941 tagtcgttca gaccatcctg gtagcaccag cgctgctcgc tgttattcac ttcatcttta
    12001 aaagtgattt ccacgccggg acacagcacc gcttttgctt tcagaacgtg cattaagcga
    12061 gagacagaaa aacgcgggct gtcgaagaaa ctttcgtccg gccagaaatg gacgctggtg
    12121 ccagtattac gtttaccgca ggtgccgaca acctgcaaat cctgcacttt ttcgccgttt
    12181 tcaaacgcga tgttatagac ctgaccgtcg cggcgcacgg tcacttccac gcgctttgac
    12241 agggcattca cgaccgaaat ccccacccca tgcagaccac cagagaactg atagttctta
    12301 ttggagaatt taccgccggc atgaagccga cagaggatca gttctaccgc cggaaccccc
    12361 tcttccggat ggatatccac cggcatcccg cgtccgtcgt caatcacttc cagcgattga
    12421 tcggcatgta aaatgacatc cacgcgtttg gcgtgacctg ccagtgcttc atccacacta
    12481 ttatcaatta cttcctgacc caaatggttg gggcgggtcg tatcggtgta catccccggg
    12541 cggcggcgta ccggctcaag cccagtgagt acctcaatgg catcagcgtt ataagtttgc
    12601 gtcatggttt aattagcaat tcgaattgat tgtcagcaac tgtgcagtcc aagaaaatcg
    12661 acaatctggt tgaaataatc ttcgaagccc gtgaatgcgt gattaccccc ctcggtcact
    12721 gtctgacggc aggaggcgta atatgccacc gcctggcggt aatccagcac ttcatcgccc
    12781 gtctgttgca gtagccagat caggtccggc gcttccagcg ggtcaatctg catgacttta
    12841 agatcataaa tatggcgaga ctctagcaca tattgctgcc cggtgtaggg gttctcgttc
    12901 tgaccgagat agtcggtcag taattcaaag ggccgcacgg cgggattcac caccacagcc
    12961 ggcagcataa aacattgcga cagccaggtg gcgtaataac cacccagcga cgatcctacc
    13021 agccctaatg gcgcaccgcc atgctcaagt acgagagatt ccagcaactc cgccgcatcg
    13081 gcaggatacg gcggcagttg agggacgatc atctcaacat gcggatgacg ctccgccagc
    13141 cagtttttta gctggcacgc ttttgccgag cgaggggaac tgttgaatcc gtgcaaatag
    13201 agaagcgtag acatcagtat ccttccgaag cggtatcggg tcggaaccgg gtatcctgca
    13261 ggcgatgcac ttccgtctcc aggacgccgt tcgcctggag ctccagcgta cgccagcccg
    13321 gcgcgatagt atccagcgta aagttcgcgc agtgcggttt gaactgtacg caggttgacg
    13381 gcgacgccaa cagacggcga ccgttccagt cgagatccag ctcctggtga atatgtccgc
    13441 atagcagata ctttacacgc gggaaattcg ccagcacgct atccagctca ccagcattac
    13501 gcaagctgtg ctgatccagc caactgcacc ctgccggcaa cggatggtgg tgcaacagga
    13561 gcaatgtctg tctctctggc gcatcggcga gcttacgctc aagccattcc agttggaact
    13621 cgctcagttc gccatgcggg acgccaaaca cctggctatc cagcaacaaa atctgccatt
    13681 gttcaccgat taacacgcgt ttagccgggg aaatccccgc ctcttgcagc gcgctgtaca
    13741 ttaccggctg aaaatcgtga ttgcccggta gccaaacgca aggcgcgcga aagcttgcga
    13801 taccctcagc aaaatgctga taagccgcag cggattgatc ctgcgccaga tcgccggtcg
    13861 ccacgatcag atcatattca tactgttgcg cccgaatagc ctccagcacg gcctggtaac
    13921 tttcccaggt attgacgcct aacagcgttt catgcttttc ggcaaacagg tgagtatctg
    13981 taatttgtaa aatcctgact cgggcctcac cagccagagg tagggttaac aggctttcca
    14041 aatggtgtcc ttaggtttca cgacgctaat aaaccggaat cgccatcgct ccatgtgcta
    14101 aacagaatcg tagccagtcg gccagaaact gattaatttg atgcttttcg tcgcgttgat
    14161 gcaacttttt atttggataa tcataccgcg ctttgaagcg aaagatctgc tggcttgaac
    14221 acacttcagc caccatcgca tcatggtaga ggcgcaccgt cagcgacggc aggctccagt
    14281 aggtgatggc tggcgccgtt tgctcgatcg ttacaagcgt agtgtatcgg gtcaattcca
    14341 caatcgttaa ccgatattgt acgttgccca cctgatagct caccgtttca ccgggggcgt
    14401 cattgcgcgg cagcaggcgg cgcaattgcg aaaaattggt ttcgcacaaa cgcatcattt
    14461 ctgggaagtc aggtgtataa cgcttcattt tttccactcg ttttttaact cttgatgatg
    14521 caactgaagc cattgcaaag cgatgactgc ggctgcgttg tcgattttcc cctcttctac
    14581 ccactggtat gcctgttccc ggcttaccac atgaacccga atatcttcgt tttcatccgc
    14641 cagaccatga atacctaccg cggtcgtggc gtccacttca cccaccagaa tagatgagcg
    14701 ctcgctggtt cctcctggac tcgccaggta actgatgacc ggtcgggtgc ggcctacggt
    14761 cagccccgct tcttccatcg cctcccgccg ggcgaccgcc tcaatggttt cgccttcttc
    14821 tatcatgccg gcgaccatct ccagcagcca cggcgtaacg cttgtgtcat atgcggcaat
    14881 acgaatctgt tcgaccagca ccacctcgtc gcgttcaggg tcaaagggta gcaagacggc
    14941 ggcgtgcccg cgctcaaaaa tttcgcgctt tacctcgcca ctcatttctc cgttgaataa
    15001 acgatggcgg aatcgataca catccaatga aaaaaaaccg cgatagcgcg tttcccgtgc
    15061 aataatttct acatcgcttt tggtgaaagt aactggcaag ttgtctgatt tacgcattgt
    15121 gctgccctgc tagcaataat gattaaatga tgaatttcaa gggtggttga ctgctgtttt
    15181 atcacccttg tggtaaattg gtgccaatta aggctcgtat ggcacgtaac gccaactttt
    15241 tgcagtggcg gattctgcta gaatcagcaa ttatttttac aaattgatca gcgctaaata
    15301 ctgcttcaca acaaggaatg caaatgaaga aattgctccc catccttatc ggcctgagcc
    15361 tgtcggggtt cagcacacta agccaggcag agaacctgat gcaagtttat cagcaagcac
    15421 gcctgagcaa cccggaattg cgtaaatccg ctgccgatcg cgatgctgca ttcgaaaaaa
    15481 ttaacgaagc acgtagtcct ttactgccgc aactgggttt aggtgccgac tacacctaca
    15541 gcaacggtta tcgcgatgcg aacggtatca actccaatga aaccagcgct tctctgcaat
    15601 taacgcagac gctatttgat atgtcgaaat ggcgtgggct caccctgcaa gaaaaagcag
    15661 caggcattca ggatgtcacc tatcagaccg atcagcagac gctgatcctc aataccgcga
    15721 acgcgtattt taaggtattg aacgctattg atgtgctttc ctatacccag gcgcaaaaag
    15781 aggctatcta ccgtcagtta gatcaaacga cgcaacgttt taacgtgggt ctggtcgcca
    15841 ttaccgacgt gcaaaacgcc cgtgcgcaat atgataccgt actggcgaat gaagtgaccg
    15901 cccgcaacaa cctggataac gcggtagaag agctgcgcca ggtaaccggc aattattacc
    15961 cggagctggc gtcgcttaac gtcgagcatt ttaaaaccga caaacccaaa gctgttaatg
    16021 cgctgctgaa ggaagcggaa aaccgtaacc tgtcgctgtt gcaggcgcgt ttaagtcagg
    16081 atctggcgcg cgagcaaatc cgtcaggcgc aggatggtca tctgccgacg ctgaatttaa
    16141 cggcctcaac cggcatttct gatacctctt atagcggttc taaaaccaac tccgcccagt
    16201 acgacgatag caacatgggg cagaataaaa tcggcctgaa cttctccctg ccgctgtatc
    16261 aaggcgggat ggttaactcg caggtaaaac aggcgcagta taacttcgtc ggcgcaagcg
    16321 aacagctgga aagcgcgcac cgtagcgtgg tgcagaccgt acgttcttcc tttaacaata
    16381 ttaacgcctc catcagcagc atcaacgcgt ataaacaggc agtcgtttcc gcgcaaagtt
    16441 ctttggatgc aatggaagcc ggttactcgg tcggtacacg taccattgtt gacgtactgg
    16501 atgccaccac cactctgtat gatgccaagc agcaactggc caacgcgcgt tatacctatt
    16561 tgattaatca gttaaatatc aaatatgcgc tcggtacgct gaacgagcag gatctgctcg
    16621 cgcttaacag tacgttgggt aaacctatcc cgacgtcgcc ggaaagcgta gcgccggaaa
    16681 cgccagagca ggatgctgcc gcagacggtt ataatgccca tagcgccgcg ccggcagtac
    16741 agccgaccgc cgctcgcgcc aacagcaata acggcaatcc attccggcat tgataagtta
    16801 ttcgctggcg ctgcgtttat cagacctatg cccttgtagg tctggtaagc gcggcgctac
    16861 ctgtcataaa gccgcgcctg aacgtaagac aacgtaaaga tcctgctatt ccgccgcatt
    16921 ctcgcctttt ctcgcttcaa tttcgaccag tcatcctcta ttctgaacgc atgttgtatt
    16981 taccactggg tcctggaaga caaatatgaa acggacaaaa tccatccatc acgcatcatt
    17041 tcgcaaaagc tggagcgcgc ggcatttaac gccggtcgcc ctggcggtta cggctgtttt
    17101 tatgctggct ggctgtgaaa aaagcgatga aaccgtatcg ctgtatcaaa acgctgatga
    17161 ctgttcagcg gcgaatccgg gcaaaagcgc ggaatgtaca accgcgtata acaatgcgct
    17221 gaaagaggcc gaacgtactg cgcctaagta cgctacacgc gaagattgcg tcgctgagtt
    17281 tggcgaaggc cagtgccagc aagcgcccgc acaggctggc atggcgccgg aaaatcaggc
    17341 gcaggcccaa caatccagcg gcagtttctg gatgccgctt atggcaggtt acatgatggg
    17401 gcgtctgatg ggcggcggcg caggctttgc gcaacagccg ctgtttagct cgaaaaaccc
    17461 ggccagccct gcatacggca aatataccga tgcggcaggt aaaaactacg gggcggcgca
    17521 accgggccgg acaatgaccg taccgaaaac cgcgatggcg ccgaaacctg ccaccacaac
    17581 aaccgttacc cgcggcggtt ttggcgaatc cgtcgccaaa cagagcacta tgcagcgtag
    17641 cgctgccggt acttcaacac gttcgatggg cggctgatac gcatggaaag agtcagtatt
    17701 accgagcgcc cggactggcg cgataaagcg actgaatacg ggtttaattt tcacactatg
    17761 tatggtgaac cgtactggtg tgaagacgct tattacaagt taacgctcgc ccaggtggaa
    17821 aaactggaag acgttaccgc cgagctgcac cagatgtgcc tcaaggtagt agaacgcgtc
    17881 atcgccagcg atgagctgat gacgaagttt cgtattccaa aacatacctg gggttttgtt
    17941 cgccagtcct ggcaaacgca acaaccgtca ctctattccc gcctcgattt ggcctgggac
    18001 ggcatcggcg agcctaagct gctcgaaaat aatgccgaca cgccaacatc gctgtatgaa
    18061 gcggcgtttt ttcagtggat ttggctggaa gatcagatca acgcgggcaa tctgccggaa
    18121 ggcagcgatc agtttaatag cctgcaggaa aagctgattg aacgctttgc tgaacttcgc
    18181 gaacagtacg gttttcagtt gctgcatctc acctgctgtc gcgatacggt tgaggatcgc
    18241 ggcaccattc agtatttaca ggattgcgcg gccgaagcgg aaatcgccac cgaatttctc
    18301 tatatcgacg atattggtct gggggaaaaa ggtcaattta cggatctgca ggatcaggtc
    18361 attgcgaacc tgttcaagct ctatccgtgg gaatttatgc tacgcgagat gttttccacc
    18421 aagctggaag atgccggcgt gcgctggctg gaaccggcct ggaaaagcat tatctccaat
    18481 aaagcgttat tgccgctgtt gtgggagatg ttcccggacc atccgaatct gttgcctgcg
    18541 tatttcgccg aagacgaaca tccgccaatg gataaatatg tcgtgaaacc gatcttctcc
    18601 cgcgaagggg cgaacgtatc gattattgag aacggtaaaa cgatcgaatc cgtggaaggc
    18661 ccgtatggcg aagagggtat gatcgtgcaa cagttctatc cgctgccaaa attcggcgac
    18721 agttacaccc tgattggtag ctggctgatt aacgatcaac ccgccggaat tggtatccgt
    18781 gaagatcggg cactgatcac ccaggatctc tcccgcttct atccgcatat ttttgtcgaa
    18841 ggatagattt tcctgtaagc ccgatgcgcg tagcgccatc gggcaatcat tcagcgcctt
    18901 atccggccta ccccacctgc accgacaaca tacttatact gcccatctca ataccgtcga
    18961 ccgggatggt gataggttcc ttgccgtccc aggcgccaag tacatacagc aaaggcaaaa
    19021 agtgctccgg cgtcgggttc gataaggcgc ccccttcatg ttgcagataa ttcaccagcg
    19081 ggtgctgttc taccggcccc tgccacgtca ggttagcttt cacaaagtca ttaaatgacg
    19141 ccgcccaggg atacggtata ttgtcaccgt gccaacgcac agtccgcagg ttatgaacca
    19201 cattcccgct agccaccagc atcacgcctt cgtcacgcag cgtcgccagt ttacgaccca
    19261 tctcaaaatg ccatgccgcc ggtttggtac tatcaacact aagctgcacc atcgggatat
    19321 ccgcattcgg gtacatcttg atcaatacgc cccaggagcc gtgatcaaat ccccacgcct
    19381 ctttatcgag cgcgacggga acgggagcca acagttcaac cagacgctgc gccagcgcag
    19441 gcgatccagg ggccggataa tgcatgtcat acagcgcctg cggaaaaccg ccaaaatcgt
    19501 ggagagtttg cggcctttcc atcgctgtga cgcccgtccc acgggtatac cagtgcgccg
    19561 acaccaccac tatcgcctgt ggtcgcggta gggcttcccc caatcgccgc caggcgcggg
    19621 tataatcatt atcgtccagc acgttcatcg ggctgccatg ccccaaaaac aatgctggca
    19681 tacacgttaa agacatgatg ttatccttac aggaaagaca ttttgttaac atcaccatac
    19741 gctttcttca cagaggaaga actcagataa ctatgatgaa gatcatcagt tattttgaag
    19801 gtcaggttcg gacggcaaat tgataaggag taatggatgt cagtaccact tattctgacc
    19861 ttactggcgg gcgctgccac ctttattggc gcgtttcttg gcgttcttgg ccaaaaaccg
    19921 tctaaccgcg tgctggcttt ttcgctgggc ttcgccgcag ggatcatgct gctcatctcg
    19981 ctgatggaga tgctgcccgc cgcgttagat accgagggga tgtcgcctgt actgggctac
    20041 gggatgttta ttatcggcct gttgggctac ttcgggctgg atcgtctgct tcctcacgct
    20101 catccgcagg atctggtgca aaaaaggcag cagccgcttc ccggctcgat aaaacgcact
    20161 gcgattttat tgacgctcgg cattagcctg cacaactttc cggaaggaat cgccaccttt
    20221 gtcactgcca gcagcaatct tgaactgggt ttcggcatcg cactggcggt ggcgttgcac
    20281 aatattcctg aagggctggc ggttgccggc ccggtttatg ccgcgacggg ctcaaaacgt
    20341 accgcgattt tttgggccgg tatctccggc atggcggaaa ttcttggcgg cgtgctggcg
    20401 tggctgattt tgggcagcct ggtttcaccg atcgttatgg cggctatcat ggcagcagtc
    20461 gccggcatta tggtggcgct ctccgtcgat gaactgatgc cgttggcaaa agagatcgat
    20521 cctaacaata accccagcta tggtgtgctt tgcggtatgt ccatcatggg gctcagtctc
    20581 gtcattttgc agacgatagg tatcggttaa gagcaacgtc gcgccggatg caggccttta
    20641 gccaggcaac atccggctgc ccgtcaagga tatgcgctat ttctgctcat tcatcacgct
    20701 gtcgccttcg ctcgtctggc gaaaacgttt cgttcgcgct tcaagtaatg catctctgtc
    20761 ttgccgaaac gctctgcaat aacgcttcat atggcaaata taccctacta ccaccagaac
    20821 gattaatatt atccaatacc aggcaataaa catccttttt acccttaaaa tttaacatca
    20881 ctaaacattt aacgttaaaa ttttacatac ccttattttg acgtattca
//
LOCUS       DAJVSD010000054        20880 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.054, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000054 DAJVSD010000000
VERSION     DAJVSD010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 20880)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20880)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20880
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.054"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(697..2766)
                     /gene="glyS"
                     /locus_tag="OQP62_001667"
     CDS             complement(697..2766)
                     /gene="glyS"
                     /locus_tag="OQP62_001667"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001291772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HCS1721248.1"
                     /translation="MSEKTFLVEIGTEELPPKALRSLAESFAANFTAELDNAGLAHGT
                     VQWFAAPRRLALKVANLAEAQPDREIEKRGPAIAQAFDAEGKPSKAAEGWARGCGITV
                     DQAERLTTDKGEWLLYRAYVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRP
                     VHTVTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRERGKVIAD
                     YEERKAKIKADAEEAARKIGGNADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPSEA
                     LVYTMKGDQKYFPVYANDGKLLPNFIFVANIESKDPQQIISGNEKVVRPRLADAEFFF
                     NTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIGADVNHATRAGLL
                     SKCDLMTNMVFEFTDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDDLPSNPVAC
                     ALAIADKMDTLAGIFGIGQHPKGDKDPFALRRAALGVLRIIVEKNLNLDLQTLTEEAV
                     RLYGDKLTNASVVDDVIDFMLGRFRAWYQDEGYSVDTIQAVLARRPTRPADFDARMKA
                     VSHFRTLEEASALAAANKRVSNILAKATEPLNDIVHASVLKEAAEIELARHLVVLRDK
                     LQPYFADGRYQEALIELAALRAPVDEFFENVMVNAEEKDIRINRLTLLSKLRELFLQV
                     ADISLLQ"
     gene            complement(2776..3687)
                     /gene="glyQ"
                     /locus_tag="OQP62_001668"
     CDS             complement(2776..3687)
                     /gene="glyQ"
                     /locus_tag="OQP62_001668"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HCS1721249.1"
                     /translation="MQKFDTRTFQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMT
                     CLRALGPEPMATAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPENIQELYLGSL
                     KELGMDPTIHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKLVT
                     GEITYGLERLAMYIQGVDSVYDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYADVDF
                     LFTCFEQYEKEAQQLLALENPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRI
                     RTLTKAVAEAYYASREALGFPMCNKDK"
     gene            complement(3826..4128)
                     /locus_tag="OQP62_001669"
     CDS             complement(3826..4128)
                     /locus_tag="OQP62_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1721250.1"
                     /translation="MIMKYFCTVMIAIALVGCTATPPPTQKAQQSKVSPTRTLDMEAL
                     CKAQAAQRYNTGAQKIAVTGFEQFQGSYEMRGNTFRKESFVCSFDADGQFLHLSMR"
     gene            4294..5288
                     /locus_tag="OQP62_001670"
                     /pseudo
     CDS             4294..5288
                     /locus_tag="OQP62_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462558.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
     gene            complement(5311..5664)
                     /locus_tag="OQP62_001671"
     CDS             complement(5311..5664)
                     /locus_tag="OQP62_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiaA/YiaB family protein"
                     /protein_id="HCS1721251.1"
                     /translation="MDDHVARRKRIFGLGMLVVGAVVYLVGLWPGCHTLSEKGYFFAA
                     IVMCGFPVLIRQEHTGNDRLLSRCKSLLLLGIGMVAVGVFNLALAGALKILCLVALGV
                     SIYGTDLYASYSDDE"
     gene            complement(5839..7293)
                     /gene="xylB"
                     /locus_tag="OQP62_001672"
     CDS             complement(5839..7293)
                     /gene="xylB"
                     /locus_tag="OQP62_001672"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HCS1721252.1"
                     /translation="MYIGIDLGTSGVKAILLNEQGDVLATHTEKLTVSRPHPLWSEQE
                     PEQWWQATDRAVKGLGRQQSLSGVRALGIAGQMHGATLLDSRQQVLRPAILWNDGRCS
                     EECAWLEKQVPQSRAITGNLMMPGFTAPKLVWVQRHEPDIFYQIDKVLLPKDFLRLRM
                     TGVFASDMSDAAGTMWLDVKKRDWSDVMLNACHLTRQQMPALFEGSDITGTLLPEVAS
                     AWGMPAVPVVAGGGDNAAGAVGVGMIDAGQAMLSLGTSGVYFAVSDGFLSKPESAVHS
                     FCHALPERWHLMSVMLSAASCLDWAAKLTGQENVPALIAAAQQADEHADSIWFLPYLS
                     GERTPHNNPQAKGVFFGLTHQHGPAELARAVLEGVGYALADGMDVVHACGVKPASVTL
                     IGGGARSEYWRQMLSDISGLQLDYRTGGDVGPALGAARLAQIAVNKQTPLADVLPQLP
                     LEQAHYPDAQRHAVYQQRRETFRRLYQQLLPLMS"
     gene            complement(7393..8715)
                     /gene="xylA"
                     /locus_tag="OQP62_001673"
     CDS             complement(7393..8715)
                     /gene="xylA"
                     /locus_tag="OQP62_001673"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HCS1721253.1"
                     /translation="MQAYFDQLDRVRYEGPQSTNPLAFRHYNPDELVLGKRMEDHLRF
                     AACYWHTFCWNGADMFGVGAFNRPWQQPGEALELAKRKADVAFEFFHKLNVPFYCFHD
                     VDVSPKGASLKEYKNNFAQMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDP
                     EVFSCAATQVVTAMNATHKLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVE
                     HKHKMGFQGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAG
                     HSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTG
                     GLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNG
                     ELGQQILKGQLSLGELAQYAEQHHLAPVHQSGHQELLENLVNRYLFDK"
     gene            9078..10256
                     /locus_tag="OQP62_001674"
     CDS             9078..10256
                     /locus_tag="OQP62_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XylR family transcriptional regulator"
                     /protein_id="HCS1721254.1"
                     /translation="MFDKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEED
                     FRARIDNIKEWLGDGVIADYDDDDIAQLLADVDVPIVGVGGSYHLAENYPAVHYIATD
                     NHALVESAFLHLKEKGVNRFAFYGLPDSSRKHWAAEREYAFRQLVAEEKYRGVVYQGL
                     ETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHVLQACEHLHIPVPEKLCVIGI
                     DNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLAREEMPLQRILVPPVRVIARRS
                     TDYRSLTDPAVIQAMHFIRNHACKGIKVEQVLDAVGISRSNLEKRFKEEVGETIHALI
                     HAEKLEKARSLLISTTLAINEISQMCGYPSLQYFYSVFKKEYVTTPKEYRDQHSEALL
                     "
     gene            complement(10317..11141)
                     /locus_tag="OQP62_001675"
     CDS             complement(10317..11141)
                     /locus_tag="OQP62_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein bax"
                     /protein_id="HCS1721255.1"
                     /translation="MILTPMRRYGAMILMLLTIAFSGEVLAKTRATQTSQKSHITETS
                     YKQVSSKQEYSRNSAKSSSLPDLRKYPSGTPRKKAFLRTVMPYITSQNAAITADRNWL
                     ISKQYQNRWSPSERARMKDIAKRYKVSWSGNTRRIPWNTLLERVDIIPTSMVATMAAA
                     ESGWGTSKLARSNNNLFGMKCTKGRCTNTPGKVKGYSQFASVEESVSAYVANLNTHPA
                     YSSFRKSRAQLRKADQEVTATAMIHKLKGYSTQGARYNNYLFAMYQDNQRLIAAHM"
     gene            11457..13484
                     /locus_tag="OQP62_001676"
     CDS             11457..13484
                     /locus_tag="OQP62_001676"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HCS1721256.1"
                     /translation="MKLAAFALTLIPGIAIASSWTSPGFPTLSTQETGRFTSHAALTK
                     GTRALTLHIDQQCWQPSGAIKLNQMLSLKPCEGAPPQWRLFKDGDYTITVDTRSGTPT
                     LLLSIKTEPERTTQLAYQCPVWDGSPLTLDVRQTFPEGTVVRDYYSGQIDTVQNGKIT
                     LLPADSHGLLLLERAETHASAPFNWRNATVYFVLTDRFRNGDPTNDHSYGRHKDGMQE
                     IGTFHGGDLRGLTSQLDYLQQLGVNALWISSPFEQIHGWVGGGTKGDFPHYAYHGYYT
                     QDWTTLDANMGSEADLRALVDGAHQRGIRILFDVVMNHAGYATLADMQEYQFGALYLS
                     GAERQKILGDRWTNWRPAAGQSWHSFNDYINFSDSAAWEKWWGKKWIRTDIGDYDSPG
                     FDDLTLSLAFLPDIKTESTTPSGLPVFYANKPDTKAKFIEGYTPRDYLTHWLSQWVHD
                     YGIDGFRIDTAKNVELPAWQQLKTQASAALHEWKQANPDKALDDSPFWMTGEAWGHGV
                     MKSDYYRYGFDAMINFDYQEQAAKAVDCLAEMGPVWQQMADKMQDFNVLSYLSSHDTR
                     LFREGGDKAAELLLLSPGAVQIFYGDESARPFGPTGSDPLQGTRSDMNWQDVSGKSAA
                     AVAHWQRISQFRARHPAIGAGQQTTLTLKHGYGFVRQYGDDTVMVVWAGRR"
     gene            13658..14908
                     /gene="avtA"
                     /locus_tag="OQP62_001677"
     CDS             13658..14908
                     /gene="avtA"
                     /locus_tag="OQP62_001677"
                     /EC_number="2.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--pyruvate transaminase"
                     /protein_id="HCS1721257.1"
                     /translation="MTFSLFGDKFTRHSGITRLMEDLNDGLRTPGAIMLGGGNPAHIP
                     AMQDYFQTLLTEMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIAL
                     TNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELL
                     PEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVID
                     NAYGVPFPGIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIANDKTITAIANMNGI
                     ISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHK
                     PEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYV
                     PEPDKIEAGVKILAEEIERAWREG"
     gene            complement(14945..15418)
                     /locus_tag="OQP62_001678"
     CDS             complement(14945..15418)
                     /locus_tag="OQP62_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HCS1721258.1"
                     /translation="MNRFIMADASACIGCRTCEVACVVSHQEQQNSAAVTTADFVPRI
                     RVIKEDSFTTATVCHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFG
                     AMTVVASASGAQAIKCDLCWHREAGPACVEACPTSALQCVDATHVQRQRLYSQPF"
     gene            complement(15535..16335)
                     /gene="yiaJ"
                     /locus_tag="OQP62_001679"
     CDS             complement(15535..16335)
                     /gene="yiaJ"
                     /locus_tag="OQP62_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator YiaJ"
                     /protein_id="HCS1721259.1"
                     /translation="MSQNNDKEKPAGSQSLFRGLMLIEILSNYPNGCPLAHLSELAGL
                     NKSTVHRLLQGLQSCGYVTPAPAAGSYRLTTKFIAVGQKALSSLNIIHVAAPHLEALN
                     LATGETVNFSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMGKIYMAFGQPD
                     YVASYWESHKDQIQPLTRNTITDLPAMYDELAQIRETSMAMDREENELGVSCIAVPVF
                     DIHHRVPYAISISLSTSRLKQIGEKNLLKPLRETAQAISNELGFTVRE"
     gene            16565..17563
                     /gene="yiaK"
                     /locus_tag="OQP62_001680"
     CDS             16565..17563
                     /gene="yiaK"
                     /locus_tag="OQP62_001680"
                     /EC_number="1.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydro-L-gulonate 2-dehydrogenase"
                     /protein_id="HCS1721260.1"
                     /translation="MKVTFEELKGAFYRVLRSRNIAEDTADACAEMFARTTESGVYSH
                     GVNRFPRFIQQLDNGDIIPDAKPQRVTSLGAIEQWDAQRAIGNLTAKKMMDRAIELAS
                     DHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLI
                     VAIPSTPITMVDMSMSMFSYGMLEVNRLAGRELPVDGGFDDNGQLTKEPGVIEKNHRI
                     LPMGYWKGSGLSIVLDMIATLLSNGSSVAEVTQENSDEYGVSQIFIAIEVDKLIDGAT
                     RDAKLQRIMDFITTAERADDNVAIRLPGHEFTKLLDDSRCNGITIDDSVWAKIQAL"
     gene            17575..18039
                     /locus_tag="OQP62_001681"
     CDS             17575..18039
                     /locus_tag="OQP62_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HCS1721261.1"
                     /translation="MIFGHIAQPNPCHLPAAIEKALHFLRTTDFRTLEPGVVEIDGKN
                     TFAQIIDMTTRDAAENRPEVHRRYLDIQFLAWGEEKIGVAIDTGNNQISESLLEQRDI
                     IFYHDSEHESFIEMIPGSYALFFPQDVHRPGCNKSIATPIRKIVVKVAIDVL"
     gene            18063..18995
                     /locus_tag="OQP62_001682"
     CDS             18063..18995
                     /locus_tag="OQP62_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4862 family protein"
                     /protein_id="HCS1721262.1"
                     /translation="MKNNTGYIIGAYPCAPSFHQKSEEEETEFWRQLSDTPDIRGLEQ
                     PCLEHLHPLGDEWLLRHTPGNWQIVVTAIMETMRRRSENGGFGLASSDEEQRKACVEY
                     YRHLHQKINKINGNNTGKVIALELHAAPLAGNPNVAQATDAFARSLKEIANWDWSCDL
                     VLEHCDAMTGPAPRKGFLPLVNVLETIADYDISVCINWARSAIEGRDTSLPLIHTQQA
                     KQAGKLGALMFSGTTLDGEYGEWQDLHAPFAPFCPQSLMTEKHVKELITAAAPELLQF
                     TGIKLLEINASADINHRINILRDGINMMKKATRR"
     gene            19134..19607
                     /gene="yiaM"
                     /locus_tag="OQP62_001683"
     CDS             19134..19607
                     /gene="yiaM"
                     /locus_tag="OQP62_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diketo-L-gulonate TRAP transporter small
                     permease YiaM"
                     /protein_id="HCS1721263.1"
                     /translation="MKRVLEGILAVLIAVLSCIVFINVILRYGFESSILSVDELSRYL
                     FVWLTFIGAIVAFMDNAHVQVTFVVEKLSPANQRRLSLLTHSLILLLCIALGWGSLQK
                     ALQDWSDHSPILGLPIGLMYIACLPTSVAIALIELRRLYHLITRNDSFQQPQQGA"
     gene            19610..>20880
                     /gene="yiaN"
                     /locus_tag="OQP62_001684"
     CDS             19610..>20880
                     /gene="yiaN"
                     /locus_tag="OQP62_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diketo-L-gulonate transporter large permease
                     YiaN"
                     /protein_id="HCS1721264.1"
                     /translation="MAVVIFLCCLLGGIAIGLPIAWSLLLCGAALMAYLDMFDVQIMA
                     QTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVIAAM
                     IMASLSGSAVADTAAVAALLVPMMRSANYPINRSVGLIASGGIIAPIIPPSIPFIIFG
                     VSSGLSISKLFMAGIAPGIMMGAALMLTWWWQAGRLNLPSQPKATPREIWYSLVSGIW
                     ALFLPVIIIGGFRSGLFTPTEAGAVAAFYALFVAVVIYRELTFSSLYHVLVNAAKTTS
                     VVMFLVAAAQVSAWLITIAELPMIVSDLLQPLVDSPRLLFIVIMISIMVVGMVMDLTP
                     TVLILTPVLLPLVKEANIDPIYFGVMFIINCSIGLITPPVGNVLNVISGVAKLKFDDA
                     VRGVFPYVVVLMSLLVLFIFIPELIITPLKW"
BASE COUNT         4923 a         5641 c         5253 g         5063 t
ORIGIN      
        1 caatatcctt aaatttactg gtgtaaaaac tttctgattt taaagtgccg aaaaaaaatt
       61 ctgcacaggc attatcaagg cagttgcctt tgcgggacat actttggatg atgccaaact
      121 ctcgtaactg atactggtac catcaatgac ggtattgcca gccctgatct gaatgaagaa
      181 ccggattggt acccgcatca agtctggcaa atgccttcat gagcatgtca tcgatcatcg
      241 gcatagttgg acgttctgaa atactgcagg agatcgcttc gttattgaag agatcaataa
      301 tgggcgcagt gcacttttga tttatatacc cttcatactt caagttgctt atgtgttggc
      361 tacgctcgct caccccagtc acatagttat ctatgctcct ggggactcac tcccttgccg
      421 cctttaagca actcgaatta ttttgggtat agtcaggtgg ggattttctc tgtctgcctt
      481 ttggtgaata cctgagacaa acagtctcaa gcacccgcag ctattctaac gccaatatcc
      541 gtaccgccag cgttaatgta ttcctgaaat aattcttgcc aatcaataga gataaccgcg
      601 tctatgagtt acagaattat tagcgaatca actaatacta tttatgttat aaaaaaacct
      661 gcccgagagc aggtttttgt ttatttaact gaacgcttat tgcagtaacg aaatatccgc
      721 aacctgcagg aacagttcgc gtagtttcga caacagcgtc aggcggttga tacggatatc
      781 tttctcttcc gcgttcacca tgacattttc gaagaattca tccaccggcg cgcgcagtgc
      841 cgccagctca atcaacgctt cctgataacg accatcggca aagtacggct gaagcttatc
      901 acgcagcaca accagatgtc tggccaactc aatttccgcc gcttctttca gtacggaggc
      961 gtggacgata tcgttcagcg gctcagtggc tttcgccagg atgttggaga cgcgcttgtt
     1021 cgccgccgcc agcgcagagg cttcttccag ggtgcggaaa tgagacaccg ccttcatgcg
     1081 ggcatcaaaa tctgccggac gggtcggacg acgcgccagt acagcctgga tggtgtcgac
     1141 ggagtaacct tcgtcctgat accatgcgcg gaaacggccc agcataaagt cgatgacatc
     1201 atcaaccacg ctggcgttag tcagcttatc gccatacaga cgcacggctt cttcggtcag
     1261 cgtttgcaga tcaaggttga ggttcttctc aacgataata cgcagcacgc caagtgcggc
     1321 acgacgcagc gcaaatgggt ctttgtcacc tttcggatgc tgaccgatac cgaagatacc
     1381 cgccagggta tccatcttgt cagcaatcgc cagcgcacaa gccactgggt tggacggcag
     1441 gtcatcacca gcaaaacgcg gctgatactg ctcgttcaac gccaccgcga catcttccgc
     1501 ttcgccatcg tgacgcgcgt agtgcatccc cataacgccc tgggtgtcgg tgaactcgaa
     1561 gaccatgttg gtcatcaggt cacacttaga cagcaggccc gcacgggtag cgtgattaac
     1621 gtcagcacca atctgttcag caatccagcc agccagagcc tggatgcgat cagttttgtc
     1681 gcgcagcgta cccagctgtt gctggaacag cacggtttgc aggcgcggca ggttatcttc
     1741 cagacgtttt ttacggtcgg tgttgaagaa gaactcggca tctgccagac gtggacgaac
     1801 gactttctcg ttaccagaga taatttgctg tggatctttc gattcaatgt tggcaacgaa
     1861 gataaagttc ggcagcagtt tgccgtcgtt cgcatacacc gggaagtatt tctggtcacc
     1921 tttcatggtg taaaccagcg cttcagacgg cacagcgagg aatttctctt caaatttcgc
     1981 ggtcagtacg accggccact ccactagcga agccacttct tccagcaaac tttcgcttaa
     2041 gtcagcgtta ccgccgatct tacgcgcggc ttcttcggca tcggctttaa tcttcgcctt
     2101 acgttcttcg taatcggcga tgactttccc gcgctcgcgc agtatttccg gatactgatc
     2161 ggcattgtca atagtgaatt ccggctcgcc cataaaacga tggccgcgaa tcacgcgatc
     2221 ggactgaatg cccagaatag tagccggaat gactttgtcg cccagcagca gggttacggt
     2281 gtgaaccgga cgcacgaagt gtacgtcgct tgcaccccag cgcatcagtt tcgggatcgg
     2341 tagcttcgcc agagaggtcg cgaccatatt cggcagcagt gcttcggtac tttcgccctt
     2401 cacgtaggcg cgatacagca gccattcgcc tttatcggta gtcagacgct cagcctggtc
     2461 aacggtaata ccgcaaccac gcgcccagcc ttctgctgct ttgctcggtt tgccttcagc
     2521 atcgaacgcc tgggcaatcg ccgggccgcg tttttcgatt tcacgatccg gttgcgcttc
     2581 cgccaggtta gctactttca gcgccagacg acgcggagca gcaaaccatt gaacggtgcc
     2641 gtgtgcgagg ccagcgttat ccagctccgc agtaaagttc gcagcaaagg actcagccag
     2701 gctgcgcagt gcttttggtg gcagctcttc agtgccgatt tccaccagaa aagttttctc
     2761 agacatagcc gcctcttact tatctttgtt gcacatcggg aagccgaggg cttcacggga
     2821 agcgtagtat gcttctgcca ctgcttttgt cagggtgcga atgcgcaaaa tgtaacgctg
     2881 acgctcggtg acggagatgg ctttacgcgc atccagcagg ttgaagctgt gggcggcttt
     2941 cagaatacgc tcgtaggccg gcagcggcag cgggttttcc agtgctagta gctgctgggc
     3001 ttctttctca tactgctcga agcaggtgaa taagaaatcc acatcggcgt attcaaagtt
     3061 ataggtggat tgctcaactt cgttttgatg gaacacgtcg ccgtaggtag ttttacccag
     3121 cgggccatcg ctccagacca ggtcgtaaac gctgtccacg ccctggatat acatcgccag
     3181 acgttccaga ccgtaggtga tttcaccggt caccagcttg cactccaggc cgccgacctg
     3241 ctggaagtag gtgaactgcg tcacttccat gccattcagc cacacttccc agccgagtcc
     3301 ccaggcaccc agcgtcgggt tctcccagtt atcttccacg aaacggatgt cgtgaatggt
     3361 cgggtccata cccagctctt tcagagaacc gaggtacagc tcctgaatat tctccggaga
     3421 cggcttaatc actacctgga actgatagta gtgctgtaag cggttcgggt tttcgccgta
     3481 gcggccatcg gtcggacgac gagaaggctg cacataggca gtcgccatcg gctctggccc
     3541 cagcgcgcgc aggcaggtca ttggatgaga agttcccgcg ccgacttcca tgtccaatgg
     3601 ttgaacaatg gtacagccct ggcgagccca gtaatcctgt aaggtcagga tcaagccctg
     3661 gaaggtcctg gtatcaaact tttgcatatt atttcgtgct ggatacgtgt ggatttaaag
     3721 gaaggagcca gtatacccgc tggatgcgag atatacagta tgaaaccggt ttgtttagcg
     3781 aaaattaccg gatttcgcgg catcacacct caccaggcgc ggcttttacc gcatagaaag
     3841 atgtaaaaac tgcccatctg catcaaaaga gcagacaaaa ctctctttac ggaaggtatt
     3901 accacgcatc tcatagctcc cctgaaactg ttcgaagccg gtaacagcaa ttttctgtgc
     3961 gccagtgttg taacgctgcg ccgcctgagc tttacacaat gcttccatat ccagcgtgcg
     4021 tgttgggctc actttactct gctgggcttt ttgcgtcggt ggcggtgtcg ctgtgcatcc
     4081 caccagagcg atggctatca tcacagtaca gaaatacttc attatcattt ttattaccgt
     4141 ctggtttgct ggtcagtctt attattaagg tttgtgggta acagaaacat tgtgcgaatc
     4201 tccttacgcc atcacaagat gtagcgtaga aagtcggatt tttccagtga gccaccgcgc
     4261 tggaactcta ttgaaacgga agctgaggaa ctgatgcagc ctaaaattaa ctggattgat
     4321 aacctgcgag ggatcgcctg tttaatggta gtgatgatcc atactacaac gtggtacatc
     4381 accaacgccc acagcgtcag cccgctaaac tgggatattg cgaatgtcct gaattcggct
     4441 tcgcgcgtta gcgttcccct gttttttatg atttcaggct atcttttttt ggcgagcgct
     4501 gcgcgcaacc gcggcatttt ttacgtattg ccctgtgcct tatcttttac agcgttgtcg
     4561 ccctggctta catttcactt tttacttcga tcaacgtcga gctttcgcta aaaaatgcgc
     4621 tgcaaaaacc cgtgttttac cacctgtggt ttttctttgc gattacggtg atctacctgg
     4681 tatcgccatt aatccaggta aaaaacgtga gcggcaaaat gctcctgatg ctgatggtga
     4741 tcattggtat tattgctaac ccaaatactg tgccgcaaaa aatcggcggc gttgaatggt
     4801 tgcccatcaa tctgtatatc agcggcgaca cgttctacta cattctctac ggtatcctgg
     4861 gccgcgccat tggaatgatg gagacgcaaa agccatcgct gacgcttatc tgcgctgccc
     4921 tgttcatcat cgcggtattt gttatttctc gcggcacatt gcatgaatta cgctggcgcg
     4981 gaaattttgc cgatacctgg tatctgtatt gcggtcccat ggtgtttatt tgcgccgtct
     5041 cactgttcac ggtagttaaa aataagctga atgcgcggac gttacctaga ctggggctta
     5101 tctcccgcca ctcgctgggt atttatggtt tccacgcgct gattatccat gcgctacgta
     5161 ctaatggtct ggaattaaaa cgttggccgc cgttagacat cgtgtgggtt tttgccgcga
     5221 cggtgacagg aagcctgcta ctttccatgc tgttacagcg tattgataaa cggaaatggg
     5281 ttagctaaac gacaatgatg gctccggcca tcattcatca tcactgtagg aagcgtaaag
     5341 atcggttcca tatatactga cccccagcgc caccagacac agtattttca gcgcgcccgc
     5401 cagcgccagg ttaaatacgc cgaccgcgac catgccgatg ccaagcaaca gcaaagattt
     5461 acaacgagaa agcaagcggt cattccccgt gtgttcctgg cgaattaaga ctggaaaacc
     5521 gcacatgacg attgccgcaa aaaaatatcc cttttcgctt aatgtatgac agcctggcca
     5581 caatcccacc aagtatacca ctgcaccgac aactaacatt cccaggccga atatccgttt
     5641 cctgcgtgca acgtgatcgt ccatctcact ctccttgtgg ttgagtgaga cacattaagc
     5701 gaagaaatag cgatgaaaaa ggcgcctgct cagcaataat ataaaaatca gaaaacacac
     5761 atacttactt cgatataatt caatagaatc aatatttacg ggaaatgcct ttcagccaaa
     5821 actgaaaggc attctgactt atgacatcaa cggcaacagc tgctgataga gtcgacggaa
     5881 ggtttcacga cgttgttgat aaaccgcatg acgctgcgca tcaggataat gcgcctgctc
     5941 cagcggcaac tgcggcaata catcggcgag cggagtctgt ttattcaccg caatttgcgc
     6001 cagacgcgcc gcgcccagcg ctggccctac atcgccgcca gtacgataat caagctgtag
     6061 cccgctaata tcagatagca tctgacgcca gtattcgctg cgcgctccgc cgccgataag
     6121 cgtcacgctg gcgggtttga cgccgcaggc gtgaaccaca tccataccgt ccgccaaagc
     6181 atatcccacg ccttccagta ccgcccgcgc cagttccgcc gggccatgct gatgggttaa
     6241 accaaagaaa acgccttttg cctgcggatt attatgcggc gtgcgctcgc cggacaggta
     6301 cggcaaaaac cagatcgaat cggcatgctc atccgcctgc tgtgcggcgg caatcagcgc
     6361 cgggacgttc tcctgcccgg tgagtttagc cgcccagtcc agacaagagg cggcgctcaa
     6421 catcacagac attaaatgcc agcgttccgg cagcgcatgg caaaaactgt gtactgcgct
     6481 ctccggttta ctcagaaagc cgtcgctgac ggcaaaatag acgcccgatg ttccgagtga
     6541 gagcatcgcc tgtccggcat cgatcattcc tacgccgacc gcgccagccg cattgtcgcc
     6601 gccgcctgcc accacaggta ctgctggcat tccccatgcg ctggcgacct ctggcagcaa
     6661 cgttccggta atgtcactac cttcaaataa cgctggcatc tgctgtcggg ttaaatgaca
     6721 ggcgttgagc ataacgtcgc tccagtcgcg ctttttcacg tccagccaca tcgttcccgc
     6781 cgcatccgac atatcgctgg caaagacgcc tgtcattcgc agccgcagaa aatctttcgg
     6841 cagcagaacc ttgtctatct ggtagaaaat atccggttcg tggcgctgca cccaaactaa
     6901 tttgggcgcg gtaaaaccgg gcatcatcag attaccggtt atcgctcgcg actgcggcac
     6961 ctgtttttcc agccaggcgc actcttcgct acagcgtccg tcattccata aaatcgctgg
     7021 tcgcagaacc tgctgacggc tatcaagtaa tgtcgcgcca tgcatttgtc cggcgatgcc
     7081 caacgcccgg acgccactta acgactgttg ccgacctaaa cctttaaccg cacgatccgt
     7141 cgcctgccac cactgctctg gttcctgttc cgaccataag ggatgcggac gcgatacggt
     7201 cagtttttca gtatgcgtag ccagcacatc gccctgctca ttcaacagga tagcttttac
     7261 acccgatgta ccaagatcga tcccgatata catagtgtgg gttcctttac tgaaagcgcc
     7321 cggcagcgct acgcttaccg ggctaatcac gactacaggc cgggctaacg cggagtcgcc
     7381 cggtagatag agttatttat caaacagata acggttaacc agattttcta acagctcctg
     7441 atgaccgctt tgatgtaccg gcgccagatg gtgctgctcc gcatactgcg ccagttcgcc
     7501 taaggagagt tgtcctttca gaatctgctg ccccagctcg ccattccagc cggcatagcg
     7561 cttcgccacg cgtttatcca actcgccgtc ttcgaccata cgcgcggcga ttttcagtga
     7621 caacgccatc gtatccatcg cgccgatatg accgtagaac agatcgtatt tatcggtgct
     7681 ctggcgacga actttggcgt cgaagttgag accgcccgtc gtgaatccgc ccgctttcag
     7741 gatttcgtac atcaccagcg cgttctcttc aacgctaatc gggaactgat cggtatccca
     7801 gcccagttgc gcatcgccgc ggttggcatc aacggagcca aaaataccca gcgcgatagc
     7861 ggttgcgatt tcatggtgga acgaatggcc cgccagcgtg gcgtggttcg cctcaatgtt
     7921 cactttgatc tctttttcca ggccgaactg tttgaggaag ccatagaccg ttgcaacgtc
     7981 ataatcatac tgatgttttg tcggttcctg cggtttcggt tcaatcagca gcgtgccctg
     8041 gaaacccatt ttatgtttgt gctcaaccac catttgcata aagcggccaa tctgttcgcg
     8101 ttcctggcgt agatcggtat tcagcaacgt ttcataacct tcgcgtccgc cccacagtac
     8161 gtaattttcg ccgcccagtt tatgcgtggc gttcattgcc gtaaccactt gcgtcgctgc
     8221 acagctaaag acttccgggt ccgggttagt ggcggcgcct gcgccatagc gcgggttggt
     8281 aaagcagttc gccgttcccc acagcagttt tacgccgctc tgctcctgtt tcgccgccag
     8341 cacatccacc atctgcgcga agttgttttt atattctttc aacgacgcgc ctttcggcga
     8401 cacatccacg tcatggaagc agtaaaaagg cacattcagt ttgtggaaaa attcaaacgc
     8461 cacgtccgct ttgcgtttcg ccagctccag cgcttcgccc ggttgctgcc acggacgatt
     8521 aaacgcgcct acgccaaaca tatccgcgcc gttccagcag aaggtatgcc agtaacaggc
     8581 cgcgaaacgc aggtgatctt ccatacgttt acctaaaacc agctcgtcgg gattgtaatg
     8641 acgaaatgcc agcgggttag tcgattgagg gccttcatag cgaacacgat cgagttggtc
     8701 aaaataagcc tgcatagtga gctccataat cagataagac ggcaagtaaa cgacataacg
     8761 tcatactgga atttcctgat ttattgctca attacgttat ttcacaccgc tattaagaga
     8821 atccccaaat gtgctctggc tctcaaaaaa acgctgaaaa ccacagaaga aaaaagcgat
     8881 cgcgatcgaa tcctggcaaa taaacaaaaa accgtaatat atagataaga aatgacaatt
     8941 gtcatccgcc gtttgctgtg atgaatttcg cataacgttt caggcgcaaa ataatttgtc
     9001 atcattcgcc agaccgttat gtcagccgtt ttgatagtat ccatgagtcc aggttcactt
     9061 ttgcaggata tatcctcatg tttgataaac gtcaccgtat cactctgtta tttaacgcga
     9121 ataaagccta tgaccgtcag gtagtggagg gggtgggtga atatttacaa gcctcgcaat
     9181 ccgaatggga tatatttatt gaggaagatt tccgtgcccg tatcgataac attaaagagt
     9241 ggttaggcga cggcgttatt gccgattacg atgatgacga tatcgcgcaa ttattggccg
     9301 atgtcgacgt acccattgtc ggggtcggcg gttcttacca tcttgctgaa aattatcccg
     9361 ccgttcatta catcgccacc gataatcatg cgctcgttga aagcgctttc ctgcatttaa
     9421 aagaaaaagg cgttaaccgc ttcgcgtttt acggtttgcc cgactccagc cgcaaacatt
     9481 gggcggcgga acgggaatac gcctttcgcc agctggtcgc cgaggaaaaa taccgcggcg
     9541 tagtctatca ggggctggaa accgcgccgg aaaactggca gcacgcgcaa aatcgcctcg
     9601 ccgactggct tcagacgctg ccgccgcaaa ccggcatcat tgccgtaacg gatgcccgcg
     9661 cccgtcacgt attgcaggcc tgcgaacacc tgcatattcc ggtgccggaa aaactttgcg
     9721 ttatcggtat tgataacgaa gagttaaccc gttatctgtc gcgcgtcgcg ctttcctccg
     9781 tcgcgcaggg ggcgcggcaa atgggctatc aggcggcgaa gctgctgcac cgtttgctgg
     9841 cgcgcgaaga gatgccgtta cagcgcattc tggtgccgcc ggtgcgcgtc attgcgcgcc
     9901 gctcgacaga ctatcgctcc ctgaccgatc cggcggttat ccaggcgatg cactttattc
     9961 gtaaccatgc ctgtaagggc attaaagtcg agcaggtgct ggacgcggtt gggatttcac
    10021 gttcaaacct ggaaaaacgt tttaaggaag aagttggcga gacgatacat gcgctgatcc
    10081 acgccgaaaa gctggaaaaa gcgcgtagtt tgttgatttc caccacgttg gcgataaacg
    10141 aaatttcgca aatgtgcggc tacccgtcgc tgcaatattt ctattcggtg tttaaaaagg
    10201 agtacgtcac tacgcctaag gagtatcgcg accagcatag tgaagcgttg ttgtagttta
    10261 tccagcctac agatgccttg taagccggat agcgtagcgc catccggcac acagaattac
    10321 atatgcgcgg cgatcagacg ctggttgtcc tggtacatcg cgaacaagta gttgttatag
    10381 cgcgccccct gggtagagta accctttagc ttatgaatca tcgccgtggc ggtgacttcc
    10441 tgatccgcct tacgcagttg ggcgcgcgac ttgcggaaag aagaataagc cggatgcgtg
    10501 ttcaggttgg cgacatacgc gctcaccgac tcctcaaccg acgcgaattg cgagtaacct
    10561 ttcaccttac ccggcgtatt ggtacaacgc cctttcgtgc acttcatgcc gaacaggtta
    10621 ttgttgctac gcgccagttt agaggttccc cagccgcttt ccgccgccgc catcgtcgcc
    10681 accatgctgg ttgggataat gtcgacgcgc tccagcaacg tattccacgg aatacgacgc
    10741 gtgttgccgg accagctcac tttatagcgc ttcgcgatat ctttcatacg cgcgcgctca
    10801 gacggcgacc agcggttctg gtactgtttt gagatcagcc aattacggtc cgcggtaatc
    10861 gcggcatttt ggctggtgat gtaaggcata acggtccgga gaaacgcttt ttttctgggg
    10921 gttccggaag ggtattttcg caaatcagga agtgaactgc tctttgcact attgcgagaa
    10981 tactcttgtt tactgctaac ctgtttataa cttgtctcag ttatgtggga cttttgactc
    11041 gtttgtgttg cgcgcgtctt tgccagcacc tcacccgaaa atgcgatggt gagtaacata
    11101 agaatcattg ccccatatcg tcgcatggga gtcaatatca ttaggtctcc tggtcggatt
    11161 gatacattcc aacacctttt atttttcacg aagttgaggt ttgaacccca aattctagca
    11221 aaaataggct taaaaagcac ctcagggaat agtcttaatc cgaaactatg tcaactatta
    11281 acgataacag acagcaataa tgccaataaa atgcggcgtt tatcgcaaat agaggcgttt
    11341 ttttgcgcct cgtcgctcac cctcgcgcct cctcctgcgc gactctctgc tggggaggag
    11401 ttcattcgcc taaaaaccag gcaagctgat gaatattgcc cacaaaggat agcgtgatga
    11461 aacttgccgc cttcgctctg acgctgatac ccggtatcgc gatcgcctca tcatggacct
    11521 cgcccggttt tccgacgctc tcgacgcagg aaaccggacg ctttaccagc catgctgcat
    11581 taacaaaagg tacacgcgcg ttaacgctcc atattgacca gcagtgctgg cagccctccg
    11641 gcgctataaa actcaaccaa atgttgtcgt taaaaccctg cgaaggcgcg ccgccgcaat
    11701 ggcgtctgtt taaagatggc gactatacga taacggtaga tacccgatcc ggtacgccga
    11761 ccctgttgtt atcgataaaa actgaacctg aacgcaccac gcagctcgcc taccagtgtc
    11821 ccgtctggga tggttcgccg ctcacgctgg atgttcgcca aacctttccg gaagggacgg
    11881 tagtgcgcga ttattacagt ggtcaaatcg ataccgtcca aaacggaaaa atcacgctgc
    11941 tacctgccga cagccacggg cttttattgc tggaacgcgc ggaaacccat gcgtcagcgc
    12001 cttttaactg gcgcaacgcc accgtttatt ttgtgcttac ggatcgcttt cgcaatggcg
    12061 atccaaccaa cgaccacagt tatggtcgcc ataaggatgg tatgcaagag attggcactt
    12121 tccacggcgg cgatttgcgc gggttgacga gtcaactgga ctatctacag caattaggcg
    12181 tgaacgcctt gtggataagc tcgccgtttg aacagatcca cggctgggtc ggcggcggaa
    12241 caaaaggcga ttttcctcat tacgcctatc acggctatta cactcaggac tggacgacgc
    12301 tggatgccaa tatgggcagc gaagccgatc tccgcgcgct ggtcgacggc gcgcaccagc
    12361 gcggcatccg tattttattt gacgtagtaa tgaatcatgc cggttacgcc acgctggcgg
    12421 atatgcagga gtatcagttc ggcgcgctct atttatccgg cgcggaacgg caaaaaattc
    12481 tcggcgatcg ctggacaaac tggcgaccgg ccgccggaca aagctggcac agctttaacg
    12541 actacatcaa cttcagcgac agcgccgcct gggaaaaatg gtgggggaaa aagtggattc
    12601 gtaccgatat tggcgactac gacagtccgg gatttgacga tttaaccctg tcgctggcct
    12661 tcctgccgga tataaaaacg gaatctacca cgccttccgg cctacccgtg ttctatgcca
    12721 acaaacccga tactaaagca aagttcattg agggctatac gccacgggat tatctgactc
    12781 actggttaag ccagtgggtg catgattacg gcattgacgg gttccggatc gatactgcca
    12841 aaaacgttga gcttcctgcc tggcaacagc taaaaaccca ggccagcgcg gcgttacatg
    12901 aatggaagca ggccaatccg gacaaagcgc tggatgatag cccgttctgg atgactggcg
    12961 aagcgtgggg ccacggcgtc atgaaaagtg attattatcg ctatggtttc gacgcgatga
    13021 tcaattttga ttatcaggag caggcggcga aagcggtcga ttgcctggcg gaaatggggc
    13081 cagtctggca gcagatggcg gataaaatgc aggatttcaa cgtattaagt tacctctcct
    13141 cgcatgatac gcgccttttc cgtgagggcg gtgataaggc ggcggaactg ctgctgcttt
    13201 cgccaggcgc ggtgcagatc ttttacggcg atgaatccgc tcgtcccttc ggccccaccg
    13261 gctccgaccc gctgcaaggc acccgttctg atatgaactg gcaggacgtg agcggaaagt
    13321 cagccgcagc cgtcgcgcac tggcagcgta ttagccagtt ccgcgccaga catcccgcca
    13381 tcggcgcagg ccaacaaacc acgctgacgc taaaacacgg gtacggtttt gtacgccagt
    13441 acggcgacga tacggtgatg gtcgtctggg cgggccgccg ctaatcgtgg cgctaccggt
    13501 cccctcgcgt accggtaacc tcttcaaaat aaaaaactaa actgataaaa atttgtagca
    13561 taaaacatca ataccaccgc ctgtccccca tttgcgcccc gccatttgta gcgttatggt
    13621 tatccacttt gacagacagt tcgatagatc acccgttatg acattttcac ttttcggcga
    13681 taaatttacc cgccattcag gcattacccg cctgatggag gatctcaacg acggcttacg
    13741 cacgccaggc gccatcatgc ttggcggcgg taacccggca cacatccctg caatgcagga
    13801 ttatttccag acgctactga cagagatggt agaaagcggc aaagccgctg atgcgctttg
    13861 taattatgac ggtccccagg gaaaaacggc gctactgaat gcactggccg tactgctacg
    13921 tgaaacgctg ggatgggata tcgaaccaca gaatattgcg ctaacaaatg gcagtcagag
    13981 cgcgtttttc tacttattta atctcttcgc cggacgtcgc gccgacggca gtacgaaaaa
    14041 ggtactattc ccgcttgcgc cggaatacat cggctatgcg gattccggtc tggaagacga
    14101 cctcttcgtt tcggcgcgcc cgaatattga gctgctgccg gaaggccagt ttaagtatca
    14161 cgtcgatttt gagcatctgc acatcggcga agaaacgggg atgatttgcg tctcgcgccc
    14221 gaccaaccca accggtaacg ttatcaccga cgaagagctg atgaagctgg acagactggc
    14281 gaatcagcac aacatcccac tggtgattga taacgcttac ggtgtaccgt ttccgggcat
    14341 tatctttagc gaggcgcgcc cgctgtggaa ccccaatatt atcctatgca tgagcctctc
    14401 aaagctgggg ctgcccggtt cccgctgcgg gattatcatc gccaatgata agacgattac
    14461 cgccattgcc aacatgaacg gcatcatcag ccttgcgccc gggggcatgg gcccggcgat
    14521 gatgtgcgaa atgattaagc gtaacgatct gctgcggctg tcggaaacgg ttatcaaacc
    14581 tttctactat cagcgcgttc aacagacgat cgcgatcatt cgtcgctatt tatccgaaga
    14641 acgctgcctg attcataaac cagaaggcgc aatatttttg tggctgtggt ttaaagatct
    14701 gccgattacc accgagctac tctatcaacg cttgaaagcg cgcggcgtgc tgatggtgcc
    14761 gggccactat ttctttcccg gactggataa accctggccg cacacacacc agtgtatgcg
    14821 gatgaactac gtgcctgaac cggataaaat cgaggcgggc gtaaaaattc tggcagaaga
    14881 gatagaacgc gcctggcgtg aaggctgacg gttattccgg ccattatgca ggccggaacg
    14941 atgttcagaa aggttgagaa tagaggcgct ggcgctgcac gtgtgttgcg tcaacgcact
    15001 gtaacgcact ggtcgggcag gcttccacgc acgccggccc cgcttcccga tgccagcaaa
    15061 gatcgcattt aatcgcctgc gcgcctgacg cggacgccac cacagtcatc gcgccaaacg
    15121 ggcaagccag catacagctt ttacaaccaa tgcagcgcga tggcgtcacg aagatatgcc
    15181 cccgatcacg gcgaatcgcc tgtaccgggc agacattcgc gcacggcgcg tcctcacact
    15241 gatggcagac cgtggccgtg gtgaagctat cctcttttat cacccggata cgcggcacaa
    15301 agtccgccgt cgtcaccgcc gcgctattct gctgttcctg gtgcgacacc acgcaggcga
    15361 cctcgcaggt acgacacccg atacacgccg acgcatccgc cataataaac cggttcattg
    15421 ttctccccct gcgttaaaac gccagaatgc cagagagcca ttccccgccg ctttgatccc
    15481 actacgcaaa cggacaaatt ttgtcagatg cctgataaaa cctggcgagc tgtcttattc
    15541 gcgaacggta aatcccagct cattagagat agcctgtgcg gtttcacgca acggtttgag
    15601 cagatttttc tcgccgatct gttttagccg tgacgtcgac agtgaaatag aaatggcgta
    15661 aggcactcga tggtgaatat caaacacagg cacagcaata caggaaacgc ccagttcatt
    15721 ttcttcgcga tccatcgcca tgctggtttc acgaatttgc gccagctcat cgtacattgc
    15781 tggtaaatcg gtaatggtat tacgagtcag cggctggatc tgatctttat ggctttccca
    15841 gtaagacgcc acataatccg gctgaccaaa cgccatataa attttcccca tcgccgagca
    15901 gtacagcggc atatgctggc caatgtaggc acgcgtgcgc agcataccgg tggtcggttc
    15961 cagcttataa atcaggatag cgtgatcatc ttcacggctg gaaaaattca ccgtctcgcc
    16021 ggtggccagg ttgagcgcct caaggtgcgg tgccgcaacg tggatgatat tcagcgatga
    16081 cagggctttt tggccgacgg caataaactt tgtcgtcaga cggtagcttc cggccgccgg
    16141 cgctggcgtc acgtatccgc aggattgaag cccctgcaac aaacgatgga cggtactctt
    16201 gttcaacccc gccagctccg acaggtgcgc cagtgggcaa ccgttcgggt agttactcaa
    16261 aatttctatc aacatcaggc cacgaaacag gctctgactc cccgcaggct tctctttatc
    16321 gttgttctgg ctcatcagaa aactctctcc tttcttgggc gatcagatgg tagctcaaag
    16381 tgtgttgcag ttcacgatat cagcataaaa aacataaccc gatgatttta atcgttttta
    16441 aaaagcttct ctggcgttgc catgtcaatt tttgatctat atatttggaa ctacatttcg
    16501 cattatgaaa tttatcgaca aaaaaacata ctaaaatttc taacaatcga ccaggagaac
    16561 agggatgaaa gtaactttcg aagagttaaa aggggccttc taccgcgtct tgcggtcgcg
    16621 gaatattgcg gaagataccg ccgacgcctg cgcggaaatg ttcgctcgca ccaccgagtc
    16681 cggtgtctat tcccacggcg tgaaccgctt tccccgcttc atccagcaac tggataacgg
    16741 cgacattatt cctgatgcta aaccgcagcg ggttaccagc ctcggcgcca tcgaacagtg
    16801 ggatgctcag cgcgctatcg gcaacctgac ggcgaaaaag atgatggacc gggccatcga
    16861 gctggcttcc gatcatggta ttggcctggt ggcgttacgt aatgctaacc actggatgcg
    16921 cggcggcagc tacggctggc aggcggcgga aaaaggctat atcggcattt gctggaccaa
    16981 ctccatcgcc gtcatgccgc cgtggggcgc gaaagagtgc cgtatcggta ccaatccgct
    17041 gatcgtcgcc atcccgtcta cgccgatcac gatggtagat atgtcgatgt cgatgttctc
    17101 ctacgggatg ttagaagtta accgtctggc gggccgcgaa ctgccggtgg acggcggttt
    17161 cgacgataac ggtcagttga ccaaagaacc gggcgtgatc gagaaaaatc accgcatttt
    17221 accgatgggt tactggaaag gatctggtct gtcgattgtg ctggacatga ttgccaccct
    17281 gctttccaac ggctcttccg ttgccgaagt gacccaggaa aacagcgatg agtatggcgt
    17341 ttcgcagatt ttcatcgcca tagaagtgga taagctgatc gatggcgcaa cccgcgatgc
    17401 caaactgcag cggattatgg atttcatcac cactgctgaa cgtgctgacg acaacgtcgc
    17461 gattcggctg cccggccacg aatttaccaa attgctggat gacagccgct gtaacggtat
    17521 caccattgac gacagcgtct gggctaaaat ccaggcgctg taaggagcca catcatgatt
    17581 tttggacata tcgcgcagcc aaatccatgt catttgccag ccgcgatcga gaaagcgctt
    17641 cactttttac gtaccaccga ctttcgcacg ctggaacccg gcgtagtgga aatcgacggc
    17701 aaaaatacct tcgcgcagat tatcgatatg accacccgcg atgctgctga aaatcgtccg
    17761 gaagtccatc gccgctatct ggatattcag tttctggcat ggggtgaaga gaaaattggg
    17821 gttgccattg ataccggtaa taatcaaatc agcgagtcat tattagaaca gcgcgatatt
    17881 attttttatc acgacagtga acatgaatca ttcattgaaa tgataccggg aagttatgcc
    17941 ctgtttttcc cgcaggatgt tcatcgtccc ggttgtaata aaagcattgc tacgccgata
    18001 cggaaaatag tcgtaaaagt cgccatagac gttttataaa atagagttta ctggagcaca
    18061 aaatgaaaaa taataccggt tatattatcg gtgcgtaccc ttgtgcaccc tcatttcacc
    18121 agaagagtga agaggaagag acggaattct ggcggcaact ctctgatact ccggatatcc
    18181 gggggctgga gcagccttgt cttgaacatc ttcacccgct cggcgacgag tggttattgc
    18241 gccatacacc gggaaactgg caaatcgtgg tcaccgcgat aatggaaacc atgcgtcgcc
    18301 gtagcgaaaa cggcggtttt ggattagcgt ccagtgacga ggaacagcgt aaagcctgcg
    18361 tggagtacta tcgtcatctg catcagaaga tcaataaaat caatgggaac aataccggca
    18421 aagtcatagc ccttgagctt catgccgctc ctctggcggg caatccgaac gtggcgcagg
    18481 caaccgacgc ctttgcgcgc tcattaaaag agattgccaa ctgggactgg tcctgcgacc
    18541 tggtgcttga acactgcgac gcgatgaccg gccccgcacc gcgcaaagga ttcttaccgt
    18601 tggtaaacgt actggaaact attgccgact atgacataag cgtctgcatt aactgggcgc
    18661 gctcggctat tgaagggcgg gatacctctc taccgctgat ccacacgcag caggccaaac
    18721 aggctggaaa actcggggcg ctgatgttct ccggtacaac gctggatgga gaatacggcg
    18781 aatggcagga cctccatgct ccgtttgcac ctttctgtcc acaaagtctg atgacggaga
    18841 aacatgttaa agaactgatt accgccgccg ctcccgaact gttgcagttt accggtatta
    18901 aattgttgga aatcaatgcc agtgccgata ttaatcaccg cataaatata ttacgcgatg
    18961 gtattaacat gatgaaaaag gccacacgcc gctaacctga attaaacatc atcaccttaa
    19021 ttctcggcct gcaactcaac gttgcgccga cctaatataa accaaacata agaaattaag
    19081 ttccactatt cagcatcgaa agaaataagt ttctataacc tgatggagtc gttatgaagc
    19141 gggtacttga gggcatactt gcggtattaa ttgccgtact ttcctgcatt gtatttatta
    19201 acgttatttt acgttacggt tttgagagca gtattttgtc ggtagatgaa ctatcacgtt
    19261 atctatttgt atggctgacg tttattggcg ccatcgttgc atttatggat aacgctcacg
    19321 ttcaggtcac ttttgtggtg gaaaaacttt cgccagcgaa tcagcgtcga ctctcgctgc
    19381 tgacacattc gctgatttta ttgttatgca tcgcattagg ctggggcagc ctgcaaaaag
    19441 cgttgcagga ctggagcgat cactcgccaa tcctcggttt accgatcggc ctgatgtata
    19501 tcgcctgtct gcccacaagc gttgccatcg cgttaatcga gctgcgtcgg ctttatcact
    19561 taataacgcg taacgattcc tttcaacaac cacagcaagg agcctaatca tggccgtggt
    19621 gatatttctc tgctgcctgc tcggcgggat cgcgataggt ttacccatcg cctggtcgct
    19681 gctgctttgc ggcgctgctc tgatggcata cctggatatg tttgacgtgc agattatggc
    19741 gcaaaccctg gttaacggcg cggacagttt ctccctactg gccattccct tttttgtttt
    19801 ggccggtgaa atcatgaacg cgggcggcct gtcaaagcga attgtcgacc tgccgatgaa
    19861 gctggtcggc cataagcccg gcggcctggg ctacgtgggc gttattgcgg caatgattat
    19921 ggccagcctt tccggctctg cggtagcaga taccgctgcg gtcgccgcgc tgctggtgcc
    19981 gatgatgcgc tccgcaaact acccgatcaa ccgctccgtt gggttaatcg cttccggcgg
    20041 gatcattgcg ccaattattc ccccctcgat tccttttatt atcttcggcg tttccagcgg
    20101 cttgtcgatc agcaagctgt ttatggccgg gatcgcaccg ggcatcatga tgggcgcggc
    20161 gcttatgctc acctggtggt ggcaggccgg gcgattaaat ctcccttctc agcctaaagc
    20221 aacaccgcgt gaaatctggt attcattggt ttcaggtatc tgggcgctgt ttttaccggt
    20281 gattatcatc ggcggcttcc gttccggact tttcacgcca acggaggcag gggcggtcgc
    20341 cgcgttttac gccctctttg tcgccgtggt tatctatcgg gaattaacgt tttccagtct
    20401 ctaccacgtg ctggtcaatg ccgccaaaac gacgtcagtc gtcatgtttc tggtggccgc
    20461 ggcccaggta tccgcctggc tgattacgat cgcggaatta cccatgatag tgtcagattt
    20521 gctgcagccg ctggtcgact ctccgcgact cttatttatc gtcattatga tctcaattat
    20581 ggtcgtcggt atggtgatgg atttgacgcc aacggtgtta attcttaccc ctgtattatt
    20641 gccattagtt aaagaagcca atattgaccc gatttatttc ggcgtcatgt tcattattaa
    20701 ctgctctatt ggattaatca caccgcccgt tggcaacgtc ctcaacgtta tttccggggt
    20761 agcaaaattg aaatttgatg acgcggtaag aggcgtattc ccttacgttg tcgtactgat
    20821 gtcgctgctg gttttattta tttttattcc cgagctaatt atcacaccgc ttaaatggat
//
LOCUS       DAJVSD010000055        20878 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.055, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000055 DAJVSD010000000
VERSION     DAJVSD010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 20878)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20878)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20878
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.055"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(135..1013)
                     /locus_tag="OQP62_001685"
     CDS             complement(135..1013)
                     /locus_tag="OQP62_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS1721265.1"
                     /translation="MTLQHTRRIVKSLFILFIIVVCIYLLPRVAINAFYYPDNKVYGP
                     TPAEAESITFTAKDGTHLHGWFIPTAFGRPENAVATVIHVHGNAGNMSAHWPLVSWLP
                     ERNVNLFMFDYRGFGESEGTPSQEGLLNDTKSAIDYVRHRADVNPERLVLLGQSLGGN
                     NVLAAVGHCVGCANMRYADQAGIRAIVLDSTFSSYSSIANQMIPGSGYLLDDRYSADR
                     NIASVSPIPVLILHGTADHVIPWQDSEKLYALAREPKQKIFIPDGDHIDAFSGRYANL
                     YRDAMINFIQTALSAK"
     gene            complement(1158..1961)
                     /gene="suhB"
                     /locus_tag="OQP62_001686"
     CDS             complement(1158..1961)
                     /gene="suhB"
                     /locus_tag="OQP62_001686"
                     /EC_number="3.1.3.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000553460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-1-monophosphatase"
                     /protein_id="HCS1721266.1"
                     /translation="MHPMLTIAVRAARKAGNVIAKNYETPDAAEASQKGSNDFVTNVD
                     KAAEAVIIDTIRKSYPQHTIITEESGEHVGTDQDVQWVIDPLDGTTNFIKRLPHFSVS
                     IAVHIKGRTEVAVVYDPMRNELFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFK
                     AKQYATTYINIIGKLFTECADFRRTGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGEL
                     LVREAGGIVSDFTGGHNYMMTGNIVAGNPRVVKAMLANMRDELSDALKR"
     gene            2080..2811
                     /gene="trmJ"
                     /locus_tag="OQP62_001687"
     CDS             2080..2811
                     /gene="trmJ"
                     /locus_tag="OQP62_001687"
                     /EC_number="2.1.1.200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ"
                     /protein_id="HCS1721267.1"
                     /translation="MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDS
                     QAIALAAGASDVIGNAQIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA
                     EAANTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAW
                     LATQENGDAADHEETPYPLVDDLERFYGHLEQTLLSTGFIRENHPGQVMNKLRRLFTR
                     ARPESQELNILRGILASIEQQNKGK"
     gene            3053..3547
                     /gene="iscR"
                     /locus_tag="OQP62_001688"
     CDS             3053..3547
                     /gene="iscR"
                     /locus_tag="OQP62_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001241352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HCS1721268.1"
                     /translation="MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQ
                     LFSRLRKNGLVSSVRGPGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQGGD
                     KCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRASGRAQDAIDV
                     KLRA"
     gene            3728..4942
                     /gene="iscS"
                     /locus_tag="OQP62_001689"
     CDS             3728..4942
                     /gene="iscS"
                     /locus_tag="OQP62_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017459011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HCS1721269.1"
                     /translation="MKLPIYLDYSATTPVDPRVAEKMMQFLTLDGTFGNPASRSHRFG
                     WQAEEAVDIARNQIAELVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKT
                     EHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLNELEAAMRDDTILVSIMHVNNEIGVV
                     QDIATIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYV
                     RRKPRIRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMETEMARLRGLRNR
                     LWNGIKDIEEVYLNGDLEQGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSATLE
                     PSYVLRALGMNDELAHSSIRFSLGRFTTEEEIDYTIDLVRKSIGRLRDLSPLWEMYKQ
                     GVDLNSIEWAHH"
     gene            4970..5356
                     /gene="iscU"
                     /locus_tag="OQP62_001690"
     CDS             4970..5356
                     /gene="iscU"
                     /locus_tag="OQP62_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000331707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HCS1721270.1"
                     /translation="MAYSEKVIDHYENPRNVGSFDNNDDNVGSGMVGAPACGDVMKLQ
                     IKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIADELELPPV
                     KIHCSILAEDAIKAAIADYKSKREAK"
     gene            5385..5708
                     /gene="iscA"
                     /locus_tag="OQP62_001691"
     CDS             5385..5708
                     /gene="iscA"
                     /locus_tag="OQP62_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HCS1721271.1"
                     /translation="MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEF
                     VDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCG
                     ESFHV"
     gene            5905..6420
                     /gene="hscB"
                     /locus_tag="OQP62_001692"
     CDS             5905..6420
                     /gene="hscB"
                     /locus_tag="OQP62_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone HscB"
                     /protein_id="HCS1721272.1"
                     /translation="MDYFTLFGLPARYQIDTQALSFRFQDLQRQYHPDKFANGTQAQQ
                     LAAVQQSATINQAWQTLRHPLTRAEYLLSLHGFDLASEQHTVRDTAFLMEQLTLREEL
                     DDIEQSKDDARLESFIKRVQKMFDARLQQMVEQLDNAAWDAAADTVRKLRFLDKLRSS
                     AEQLEEKLLDF"
     gene            6433..8283
                     /gene="hscA"
                     /locus_tag="OQP62_001693"
     CDS             6433..8283
                     /gene="hscA"
                     /locus_tag="OQP62_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001559634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HCS1721273.1"
                     /translation="MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETL
                     PDHEGRHLLPSVVHYQQQGHTVGYAARDNAAQDTANTISSVKRMMGRSLADIQARYPH
                     LPYRFKASVNGLPMIDTAAGLLNPVRVSADILKALAARASESLSGELDGVVITVPAYF
                     DDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGKEGVIAVYDLGGGTFDISIL
                     RLSRGVFEVLATGGDSALGGDDFDHLLADYIREQAGIADRSDNRVQRELLDAAITAKI
                     ALSDADTVRVNVAGWQGEITREQFNDLISALVKRTLLACRRALKDAGVEPQDVLEVVM
                     VGGSTRVPLVRERVGEFFGRTPLTAIDPDKVIAIGAAIQADILVGNKPDSEMLLLDVI
                     PLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDSQTAMSIHVMQGERELVQDCRS
                     LARFALRGIPPLPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDGE
                     IASMIKDSMSFAEQDVKARMLAEQKVEAARVLESLTGALTADAALLSAAERQCIDDAA
                     AHLSAVAQGDDVDAIEQAIKNVDKQTQEFAARRMDQSVRRALKGHSVDEV"
     gene            8285..8620
                     /gene="fdx"
                     /locus_tag="OQP62_001694"
     CDS             8285..8620
                     /gene="fdx"
                     /locus_tag="OQP62_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015683702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HCS1721274.1"
                     /translation="MPKIVILPHQDLCPDGAVLEAETGETILDVALRNGIEIEHACEK
                     SCACTTCHCIVREGFDSLPESSEEEDDMLDKAWGLEPESRLSCQARVTDDDLVIEIPR
                     YTINHAREH"
     gene            8632..8832
                     /gene="iscX"
                     /locus_tag="OQP62_001695"
     CDS             8632..8832
                     /gene="iscX"
                     /locus_tag="OQP62_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004104502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HCS1721275.1"
                     /translation="MGLKWTDSREIGEALYDAYPDVDPKTVRFTDLHQWICELDDFDD
                     DPNASNEKILEAILLVWLDEAE"
     gene            8886..10169
                     /gene="pepB"
                     /locus_tag="OQP62_001696"
     CDS             8886..10169
                     /gene="pepB"
                     /locus_tag="OQP62_001696"
                     /EC_number="3.4.11.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase PepB"
                     /protein_id="HCS1721276.1"
                     /translation="MTEAMKITLSTQPADARWGDKATYSINNDGITLHLNGKDDLGLI
                     QRAARKIDGLGIKQVALTGEGWDTERCWAFWAGYKGPKGVRTVMWPDLDDAQRQELDN
                     RLTIIDWVRDTINAPAEELGPEQLAQRAVDLLCSVACDSVTYRITKGEDLREQNYMGL
                     HTVGRGSERPPVLLALDYNPTGDKDAPVYACLVGKGITFDSGGYSIKQSAFMDSMKSD
                     MGGAATVTGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIIRYRNGKNVEVMNT
                     DAEGRLVLADGLIDASAQHPRLIIDMATLTGAAKTALGNDYHALFSFDDTLAGRLLTS
                     AAQENEPFWRLPLAEFHRNQLPSNFAELNNTGSATYPAGASTAAGFLSHFVENYREGW
                     LHIDCSATYRKAPVEQWAAGATGLGVRTIANLLTA"
     gene            10279..11055
                     /gene="sseB"
                     /locus_tag="OQP62_001697"
     CDS             10279..11055
                     /gene="sseB"
                     /locus_tag="OQP62_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311415.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enhanced serine sensitivity protein SseB"
                     /protein_id="HCS1721277.1"
                     /translation="MSETKNELEILLEKAATEPAHRSAFFRTLLESTVWVPGSAAEGE
                     AIVEDSALDLQHWEKEDGTTVIPFFTSLEALQQAVEDEQAFVVMPARTLFEMTLGETL
                     FLNAKLPTGKEFMPREISLLLAEEGSPLSTQEVLEGGESLILSEVAEPPSQMIDSLTT
                     LFKTIKPVKRAFLCAIKEHADAQPNLLIGIEADGEIEEIIHAAGNVATDTLPGDEPID
                     ICQVRKGAQGISHFITEHIAPFYERRWGGFLRDFKQNRII"
     gene            complement(11624..12292)
                     /locus_tag="OQP62_001698"
     CDS             complement(11624..12292)
                     /locus_tag="OQP62_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5066 family protein"
                     /protein_id="HCS1721278.1"
                     /translation="MDISLTNLMELVKKVNRNKVPNPMPAEEISCLRVRKYRDPQNTE
                     TTELPESLKALLAYDRDLLSNYNMPVIETLQRFIDNEGVIHSYSPDEEAYYGAGMDSS
                     GIDIEDLMPVWSNDPRLPALIRIDHVGDQAIFIYITERDANGEYPIARMERNEFWLAE
                     SSLVEYLYNIISGAKDIGFTEEDLHLPQWKAQQKMNEQRDAALLDLEDYHEAFWAKLD
                     ALVD"
     gene            complement(12539..13381)
                     /gene="sseA"
                     /locus_tag="OQP62_001699"
     CDS             complement(12539..13381)
                     /gene="sseA"
                     /locus_tag="OQP62_001699"
                     /EC_number="2.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-mercaptopyruvate sulfurtransferase"
                     /protein_id="HCS1721279.1"
                     /translation="MTTAFFVAADWLAEHIDDPEIQILDARMAPPGQEHRDMAGEYRA
                     GHIPGALFFDIEALSDRASPLPHMMPRPEAFAVAMRELGVRQDKHLVIYDEGNLFSAP
                     RAWWMLRTFGAEKVSILAGGLAGWQRDEWLLREGEEAHEGGEFEAKFTPQAVVRLTDV
                     LLASHEKTAQIVDARPAARFNAQADEPRPGLRRGHIPGALNVPWTELVYEGELKTTDE
                     LNEVFFSHGVSFDRPIIASCGSGVTAAVVVLALATLDVPDVTLYDGAWSEWGARTDLP
                     VEPA"
     gene            13590..18524
                     /locus_tag="OQP62_001700"
     CDS             13590..18524
                     /locus_tag="OQP62_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
                     /protein_id="HCS1721280.1"
                     /translation="MKHLRVVACMIMLALAGCDNNDKTAPTTKSEAPAVAQPSPAQDP
                     SQLQKLAQQSQGKALTLLDASEAQLDGAATLVLTFSIPLDPEQDFSRVVHVVDKKSGS
                     VDGAWELAPNLKELRLRHLEPERVLVVTVDPAVKALNNATFGKSYEKTITTRDVQPSV
                     GFASRGSLLPGKIAEGLPVMALNVNHVDVNFFRVKPGSLASFVSQWEYRSSLSNWESD
                     NLLKMADLVYTGRFDLNPARNTREKLLLPLSDIKPLQQAGVYVAVMNQAGHYNYSNAA
                     TLFTLSDIGVSAHRYHSRLDIFTQSLENGAAQSGIEIVLLNDKGQTLAQATSDAQGHV
                     QLEADKAAALLLARKEGQTTLLDLTLPALDLSEFNVAGAPGYSKQFFMFGPRDLYRPG
                     ETVILNGLLRDSDGKTLPDQPVKLEVVKPDGQVMRTVVSQPENGLYRLNYPLDINAPT
                     GLWHVRANTGDNLLRSWDFHVEDFMPERMALNLTAQKTPLAPADEVKFSVVGYYLYGA
                     PANGNTLQGQLFLRPLRDAVAALPGFQFGNIAEENLSRSLDEVQLTLDKGGRGEVSAA
                     SQWQEAHSPLQVILQASLLESGGRPVTRRVEQAIWPADTLPGIRPQFAAKAVYDYRTD
                     TTVNQPIVDEDSNAAFDIVYANAQGEKKAVSGLQVRLIRERRDYYWNWSESEGWQSQF
                     DQKDLVEGEQTLDLNADETGKVSFPVEWGAYRLEVKAPNETVSSVRFWAGYSWQDNSD
                     GSGAARPDRVTLKLDKANYRPGDTMKLHIAAPVAGKGYAMVESSDGPLWWQAIDVPAQ
                     GLELTIPVDKTWNRHDLYLSTLVVRPGDKSRSATPKRAVGLLHLPLGDDNRRLDLALE
                     SPAKMRPNQPLTVRVKASVKHGEMPKQINVLVSAVDSGVLNITDYATPDPWQAFFGQK
                     RYGADIYDIYGQVIEGQGRLAALRFGGDGDDLTRGGKPPVNHANIIAQQAQPITLNEQ
                     GEGVVTLPIGDFNGELRVMAQAWTADDFGRGESKVVVAAPVIAELNMPRFLAGGDVSR
                     LVLDVTNLTDRPQTLNIALAASGLLELLSQQPQPVNLAPGVRTTLFVPVRALEGFGEG
                     EIQATISGLNLPGETLGAQHKQWQIGVRPAWPAQTVNSGIALAPGESWHVPEQHLANV
                     SPATLQGQLLLSGKPPLNLARYIRELKAYPYGCLEQTTSGLFPALYTNAAQLQSLGIT
                     GDSDEKRRAAVDIGISRILQMQRDNGGFALWDENGAEEPWLTAYAMDFLIRAGEQGYS
                     VPPEAINRGNERLLRYLQDPGTMLIRYSDNTQASTFAAQAYAALVLARQQKAPLGALR
                     EIWERRSQAASGLPLMQLGIALNTMGDARRGEEAITLALNTPRQDERQWIADYGSSLR
                     DNALMLSLLEENNLRPDAQNALLSSLSEQAFGQRWLSTQENNALFLAAHSRQASAGAW
                     QAQTSLEAQPLSGDKALTRNLDADQLAALEVTNTGSQPLWLRLDSSGYPSSAPEPASN
                     VLQIERQILGTDGQRKSLSSLRSGELVLVWLTVVADRNVPDALVVDLLPAGLELENQN
                     LADSSASLPESGSEVQNLLNQMQQADIQYMEFRDDRFVAAVVVNEGQPVTLVYLARAV
                     TPGTYQLAQPQVESMYAPQWRATGASEGLLIVTP"
     gene            18525..20840
                     /gene="pbpC"
                     /locus_tag="OQP62_001701"
     CDS             18525..20840
                     /gene="pbpC"
                     /locus_tag="OQP62_001701"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461466.1"
                     /note="penicillin-binding protein 1C; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase PbpC"
                     /protein_id="HCS1721281.1"
                     /translation="MNGWRGKRGRWLWLAGAPLFIFLALWAADKLWPLPLNEVHPARV
                     VVAHDGTPLWRFADAGGIWRYPVTIEEVSPRYLEALINYEDRWFWQHPGVNPFSVARA
                     AWQDLTAGRVISGGSTLTMQVARLLDPHSRTFGGKIRQLWRALQLEWHLSKRDILTLY
                     LNRAPFGGTLQGIGAASWAYFGKPPARLSYADAALLAVLPQAPSRLRPDRWPTRAEAA
                     RNKVLDRMAEQGVWPAETVRESREEPVWLAPRQMPQLAPLFARMMLSKSRSDKIVTTL
                     DAGLQRQLEDLARAWKGRLPARSSLAMIVVDHTDMSVRGWVGSVDLNDDSRFGHVDMV
                     TAIRSPGSVLKPFVYGLALDDGLIHPASLLQDVPRRTGDYRPGNFDSGFHGPVSMSDA
                     LVRSLNLPAVQVLEAYGPKRFAAKLRNVGLPLYLPAGAAPNLSLILGGAGARLDEMAA
                     AYSAFARHGKAAKLRLQPDDPLSERPLMSPGAAWIIRRIMADEAQPLPDNALPRIVPL
                     AWKTGTSYGYRDAWAIGVNARYIIGIWTGRPDGTPVVGQFGFASAVPLLNQVNNLLLA
                     HTGRLPEDPRPQTVSRGVICWPGGQTLPAGNSNCRRRLATWLLDDSQPPTLLLPEQED
                     INGIRFPVWLDDTGRRVAADCPQARAHTFIVWPRPLEPWLPPAERRSARLPAASDHCP
                     PLQGNDAAPLMLSGVRDGAVIRQLPGQENVTLPVSTTGGKGRRWWFLNGEPVNGENNR
                     LSLLLNIAGRYQLVVMDESGQVAAVNFELIR"
BASE COUNT         4742 a         5532 c         6111 g         4493 t
ORIGIN      
        1 ttataaaaat cagatgaata ttactgttac gctagcgcta atccgccgcc ttcgctaacg
       61 ggaaaaaatg gtttttacta tcggtataat aaatatattc ttaatcataa aatatgcata
      121 tatacagcgt cgcgctattt agcggatagc gctgtctgaa taaaattaat catcgcatcg
      181 cggtaaaggt ttgcataacg tccggaaaaa gcatcaatgt gatcgccgtc aggaatgaag
      241 attttttgtt tgggctcccg ggcgagggca tacaatttct cactgtcctg ccagggaata
      301 acatggtctg ccgtgccatg aagaatcaat accggaatgg ggctgacgct ggcgatattg
      361 cgatccgcgc tatagcggtc atcaagcaaa tagccgctgc ccgggatcat ctggttggcg
      421 atggaggaat aggatgaaaa cgttgagtcg aggacaatcg cacgtatgcc cgcctggtcg
      481 gcgtagcgca tatttgcgca gcctacgcag tggcctacgg cggccagtac attattgccg
      541 cccaggctct gccccagcag taccaggcgc tcggggttaa cgtcggcacg atgccgcaca
      601 taatctatcg cgcttttcgt atcgttcagt agcccctctt gtgatggggt gccctcagat
      661 tcgccaaacc cacggtaatc aaacataaac aggtttacgt tgcgttctgg cagccaactg
      721 actaacggcc agtgcgccga catatttccg gcgttgccat ggacatgaat caccgtcgcg
      781 acggcgtttt ccggcctgcc gaaagcagta ggaataaacc agccgtgcag atgcgtgcca
      841 tctttggcgg taaaggtaat ggattcagct tcggcagggg ttggtccata gactttattg
      901 tccgggtaat aaaaggcatt gatcgctacg cggggtagca ggtaaataca gactacaatg
      961 ataaacagaa taaaaaggga tttgacgatg cgtcgggtat gttgaagggt catgttcgct
     1021 tccttgccgc tttatgtcca tagcggagca gggagcgatc gtacaaaaac atgcaggcaa
     1081 gtaaagcgat gaggtggtgt ttaggaaaaa cgcctgaaaa ggcacggcgg atgagtggcc
     1141 ccatccgccg aagagactta gcgcttcagc gcatcgctca gttcgtcgcg catattcgcc
     1201 agcatggctt taacgacgcg cggattcccc gccacgatat taccggtcat catgtagtta
     1261 tgaccgccgg tgaaatcgct gacgataccg cccgcttcac gaaccagcag ttcgcccgcg
     1321 gcgaaatccc acggacgaag gccaatttca aagaaaccat cgacacgacc tgcagccaca
     1381 taggccagat ccagcgcggc ggaaccggtg cggcggaaat cggcgcattc ggtgaacagc
     1441 ttgccgataa tattaatgta ggtggtcgcg tattgtttgg ctttgaacgg gaagccggta
     1501 gcgaggatag tgccgtccag atcgcgcgcg gtactgccgc gcagacggta gccgttcagc
     1561 tgcgcgccct gaccgcgggt ggcggtgaac agttcgttac gcatcggatc gtaaacgaca
     1621 gccacttcag tacggccttt aatgtgtaca gcaatggaaa cagagaagtg tggcagacgt
     1681 ttgatgaagt tggtggtgcc atccagcgga tcgataaccc attgaacatc ctgatctgtg
     1741 ccaacgtgct caccgctttc ttcggtgata atagtgtgtt gcgggtaaga tttgcgaatg
     1801 gtgtcgataa ttaccgcttc agcggcctta tctacgttgg tcacaaaatc gttactgcct
     1861 ttttggctcg cttctgcagc gtccggagtt tcatagtttt tggcaattac attacccgcc
     1921 ttgcgcgctg cgcgcacggc gatggtcagc atcggatgca tcggtctctc tcactggatg
     1981 ttaaagaacg ggaaaacggc gcagagtata gcagcgagat cggaatctgt cttggtttta
     2041 tggtaagatg tccgaataat ctttagctga agaaagacaa tgctgcaaaa cattcgaatt
     2101 gtgctggtgg aaacctccca caccggcaat atgggctctg tggctcgcgc tatgaaaacc
     2161 atgggcttaa ctaacctgtg gctggtaaac ccgctggtga aaccggactc ccaggccatc
     2221 gccctggcgg caggcgccag cgatgtgatc ggtaatgcgc agatcgtcga tacgctggac
     2281 gaagcgttgg ctggctgtag cctggtggtc ggcaccagcg cccgctcccg cactctgccg
     2341 tggccgatgc ttgatccgcg cgagtgcggc ttaaaaagcg tagcggaagc ggcaaatacg
     2401 ccggttgcgc tggtttttgg tcgtgagcgt gtcgggctga ctaacgatga gttgcaaaaa
     2461 tgccattatc acgtcgcgat tgccgctaac ccggagtaca gctcgttgaa tctggcgatg
     2521 gcggtacagg tcatcgcgta tgaagtccgc atggcctggc tggcgacgca ggaaaacggc
     2581 gacgcggcag atcatgaaga gacaccgtat ccgctggtgg acgatcttga acgtttttac
     2641 ggccatctgg agcagacgtt gctctccact ggctttattc gcgaaaacca tccggggcag
     2701 gtgatgaata aattgcgccg tctgtttacc cgcgcccgcc cggaaagcca ggagttgaat
     2761 attctgcgtg ggattctggc gtctattgag cagcagaata aaggcaagta accgcgttaa
     2821 tgccggatgg ctcttcgctt atccgaccta caaatcgtgc ggcctgtagg ccggataagc
     2881 gaagcgccat ccggcacatc aataccgcac ggaacgctaa atacctgact aatttactca
     2941 agtaaatagt tgaccaattt actcgggaat gtcagacttg tccctgctat gcaatacccc
     3001 cattttacaa taaaaaaccc cgggcagggg cgagtttgag gttaagtaag acatgagact
     3061 gacatctaaa gggcgttatg ccgtgaccgc aatgttagac gttgcgctca actccgaagc
     3121 gggcccggta ccgttggctg atatttctga acgtcagggg atttcccttt cttatctgga
     3181 acagctattt tcccgtttac gtaaaaacgg tctggtttcc agcgtacgcg ggccgggcgg
     3241 cggttatctg ctgggtaaag atgctggcag tatcgcggtc ggcgaagtga tcagcgcggt
     3301 tgatgaatcc gttgacgcga cccgttgcca gggcaaaggc ggctgccagg gcggcgataa
     3361 atgcctgacc catgcgctgt ggcgtgattt aagcgatcgt ctgaccggtt ttctcaacaa
     3421 tattacttta ggcgagctag tgaataacca ggaagttctg gatgtgtctg gtcgccagca
     3481 cacgcatgac gcgccgcgcg ccagcggtcg tgcgcaggac gctatcgacg ttaaattacg
     3541 cgcttaatta aaatattacg ccatctcttc tggcggcctc atgcggtgaa tgccgcggtc
     3601 gtctgaagga tgaagcgtaa aaaagaattc agaatcaggc cgggacgcgg acgtcccgtc
     3661 aacacggtcg tacatccagc cggttgcctg attccttgca ttgagtgatg tacggagttt
     3721 aagagcaatg aaattaccga tttatctcga ctactccgca accacgccgg tggacccgcg
     3781 tgttgccgag aaaatgatgc agtttctgac cctggacgga acctttggga acccggcgtc
     3841 tcgttcacac cgtttcggct ggcaggctga agaagccgtc gatatcgccc gcaaccagat
     3901 tgctgaactg gtcggcgccg acccgcgtga aatcgtcttt acctcagggg cgacggagtc
     3961 cgataacctg gcgatcaaag gcgctgccaa cttttatcag aaaaaaggca agcacatcat
     4021 caccagcaag accgagcaca aagcggtgct ggacacctgc cgtcagcttg agcgcgaagg
     4081 gtttgaagtg acctacctgg cgccgcagcg caacggcatc atcgatctca acgagctcga
     4141 agcagcgatg cgtgacgaca ccattctggt ttccatcatg cacgtgaaca acgaaatcgg
     4201 cgtggtgcag gatatcgcga ccatcggcga aatgtgccgc gcgcgcggta tcatctacca
     4261 cgttgacgcc acccagagcg tgggcaaact gcctatcgac ctgagccaac tgaaagtgga
     4321 tctgatgtcc ttctccggtc ataaaattta tggtccgaaa ggcattggcg cgctgtatgt
     4381 gcgtcgtaag ccgcgtattc gcattgaagc gcagatgcat ggcggcgggc acgagcgcgg
     4441 tatgcgctct ggtactctgc ctgttcacca gatcgtcggc atgggcgaag cttaccgtat
     4501 cgcgaaagaa gagatggaga ccgaaatggc ccgtctgcgc ggtctgcgta accgtctgtg
     4561 gaacggcatc aaagatattg aagaagttta cctgaacggc gaccttgagc agggcgcgcc
     4621 aaacattctc aacgtgagct ttaactacgt tgaaggcgag tcgctgatca tggcgctgaa
     4681 agacctggcg gtctcttccg gttccgcctg cacctccgcc actctggaac cgtcctacgt
     4741 gctgcgcgcg ttgggcatga atgacgagct ggcgcatagc tctatccgtt tctctttagg
     4801 tcgttttacc actgaagaag agatcgacta caccattgat ctggttcgta aatccattgg
     4861 ccgtctgcgt gacctttctc cactgtggga aatgtacaag cagggtgtgg atctgaacag
     4921 catcgaatgg gcacatcatt aatcggtatc ggaatcagga gaatttataa tggcttacag
     4981 cgaaaaagta atcgatcact atgagaaccc gcgtaacgta gggtcgtttg acaacaacga
     5041 cgataacgtg ggaagcggta tggttggcgc gccggcctgc ggcgacgtca tgaagttgca
     5101 gattaaagtt aacgatgaag gtatcattga agacgcgcgc ttcaagactt acggctgcgg
     5161 ttccgctatc gcctccagtt ctctggtaac ggagtgggtg aaagggaaat ccctggacga
     5221 agcgcaggcg attaaaaaca ccgacattgc agacgaactg gagctgccgc cggtgaaaat
     5281 tcactgctct attctggcgg aagacgcgat taaagccgct attgcggatt acaaaagcaa
     5341 acgcgaagcg aaataaaata gaacgttaac attgaggttt tgttatgtcg attacactta
     5401 gcgacagtgc agcagcgcga gttaatacct tcctggccaa ccgtggtaaa gggtttggtc
     5461 tgcgtctggg cgtgagaacc tccggctgct caggtatggc ttatgtactg gaatttgttg
     5521 acgagccgac ggcggaagac accgtgtttg aagacaaagg cgttaaggta gtggttgacg
     5581 gcaagagcct gcaatttctg gacggtacac agctggactt cgtaaaagaa ggcctgaacg
     5641 aagggtttaa attctccaac ccgaatgtga aagatgagtg tggttgcggc gaaagcttcc
     5701 acgtgtaact gtgttccgct gttataccga gtcattcgtg ctgcagaaaa gcggcaagcg
     5761 agtgaatccc caggcgctta cttaagtaag tgactggggg aacccgcgca gacaacgcat
     5821 ctgcggcgcg aagtaagaag gtataacccc accgtggtcg cctgcgtgtg gggtttgttc
     5881 tgacaggcta tccctgagaa tgttatggat tacttcaccc tctttggctt accagcccgt
     5941 tatcagattg acacccaggc gctgagcttt cgttttcagg atctgcaacg ccagtatcac
     6001 cctgacaaat ttgccaacgg cactcaggcg cagcagcttg ccgccgtcca gcaatccgcc
     6061 acgatcaacc aggcctggca aacgctgcgt caccctttga cgcgcgcgga gtatctgctt
     6121 tccttacacg ggttcgatct ggccagcgag cagcatacgg tacgcgacac cgcgtttctg
     6181 atggaacaac tcacgcttcg cgaagagctg gacgatatcg aacaatcaaa agacgacgcg
     6241 cggctggaaa gcttcatcaa acgcgtacaa aagatgtttg atgctcgtct tcagcaaatg
     6301 gtggaacagt tggacaacgc cgcgtgggac gcggcggcgg atacggtgcg caaactgcgg
     6361 tttctcgata aactgcgaag cagcgcagaa caactcgaag aaaagctgct cgatttttaa
     6421 ctggaatcta acatggcctt attacaaatt agtgagcctg gtctgagcgc cgcgccgcat
     6481 cagcgtcgtc tggcggcggg catcgactta ggcactacca actctctggt tgcgacggtt
     6541 cgcagcggcc aggcggaaac actgcctgac cacgaagggc gccacctgtt gccttcagtg
     6601 gttcactatc agcagcaggg ccatacggtc ggttacgctg cgcgtgacaa tgccgcgcag
     6661 gatacggcca acactatcag ctctgtgaaa cgcatgatgg gacgctcgct ggcggatatc
     6721 caggcgcgct atccgcatct gccttaccgg tttaaggcaa gcgttaatgg gctgccgatg
     6781 attgacacgg cggctggatt gctcaatccg gtacgcgtat ctgctgatat tctcaaagcg
     6841 ctggccgcgc gggctagcga atcgctctcc ggcgagctgg atggcgtggt gattaccgtt
     6901 cccgcctatt tcgatgatgc ccaacgtcag ggaacgaaag acgccgcgcg gctggcaggc
     6961 ctgcatgtac tgcgcctgct caacgaaccg acggcggcgg cgattgccta cggtctggac
     7021 tcaggcaaag aaggcgttat cgctgtttac gatctcggcg gcggtacctt cgatatctct
     7081 atcttacgcc tgagccgcgg ggtgtttgaa gtgctggcga cgggcggtga ttctgcgctc
     7141 ggcggcgacg actttgacca tctgctggcg gactatattc gcgagcaggc gggaattgcc
     7201 gatcgtagcg acaatcgcgt tcagcgcgaa ctgctggatg ccgcgattac cgcgaaaatc
     7261 gccttaagcg atgccgatac tgttcgcgtt aacgttgcgg gctggcaggg ggagatcact
     7321 cgcgagcagt ttaacgatct catttccgcg ctggttaagc gcacgctatt ggcctgccgt
     7381 cgcgcattga aagatgccgg cgttgagccc caggacgttc tggaagtggt catggtcggc
     7441 ggttcgaccc gtgtaccgct ggtgcgtgag cgggtgggcg aattttttgg ccgcacgccg
     7501 ttaaccgcta tcgacccgga taaagtgatc gctatcggcg cagcgattca ggccgatatt
     7561 ctggtcggca acaagccgga cagcgaaatg ctgctgctgg acgtgattcc actctctctt
     7621 gggctggaaa cgatgggtgg cctggtggaa aaagtcattc cgcgcaacac cactatcccg
     7681 gtggcgcgcg cgcaggattt caccaccttc aaagacagtc agaccgcgat gtctatccat
     7741 gtgatgcagg gcgaacgcga actggtgcag gactgccgct cgctggcgcg ctttgcgctg
     7801 cgcgggattc cgccgctgcc ggcgggcggg gcgcatattc gcgtgacctt ccaggtagac
     7861 gccgatggcc tgttgagcgt caccgcaatg gaaaaatcca ccggcgtcga ggcctccatt
     7921 caggtcaaac cttcctatgg cctgaccgat ggcgaaatcg cctcgatgat caaggattcc
     7981 atgagttttg ccgagcagga cgtgaaagcg cgtatgctgg cggagcaaaa agtcgaagcc
     8041 gcgcgcgtgc tggaaagttt gaccggcgcg ctaactgccg acgccgcgct gttaagcgcc
     8101 gcagaacgtc aatgcattga tgatgccgcc gcacatttaa gcgcggtcgc acaaggcgat
     8161 gatgttgacg caatagaaca agccattaaa aacgtagata aacaaaccca ggaatttgcc
     8221 gctcgccgca tggaccagtc ggttcgtcgc gcgttgaaag gccattccgt agacgaggtt
     8281 taacatgccg aagattgtta ttctgcctca tcaggatctt tgtccggatg gcgcagttct
     8341 ggaagctgag accggtgaaa ccattcttga cgttgcgctg cgcaacggca tcgagattga
     8401 acacgcctgt gagaaatcgt gcgcctgcac cacctgtcac tgtattgtac gtgaaggctt
     8461 cgactccttg ccggaaagtt cggaagaaga agacgatatg ctggataaag cgtgggggct
     8521 ggagccggaa agtcgactga gctgccaggc ccgcgttacc gacgacgatc tggttatcga
     8581 aattccacgt tacacaatca accatgcgcg tgagcattaa cagagggtag tatgggactc
     8641 aagtggaccg atagccgcga gatcggcgaa gcgttatacg acgcatatcc tgatgtcgat
     8701 cctaaaaccg ttcgtttcac cgatctgcat cagtggatct gcgaactgga cgattttgac
     8761 gacgacccta acgcatccaa tgaaaaaatt ctggaggcga ttctgctagt ctggttggat
     8821 gaagcagagt aagtcaaata acgggctgcc ctacgacggc ccgtttgcta ataaggaaaa
     8881 taacaatgac agaagccatg aaaattacgc tttccacgca gcctgccgat gcgcgctggg
     8941 gcgataaagc cacttacagt attaataacg acggtattac cttgcatctt aacggtaaag
     9001 acgatctggg gttgatccag cgtgcggcgc gtaaaatcga cggcctggga ataaaacagg
     9061 tcgcgctgac aggcgaagga tgggataccg agcgttgttg ggcattctgg gcgggttaca
     9121 aaggaccaaa aggcgtccgt accgtaatgt ggccggattt agacgatgcc caacgtcagg
     9181 agctggataa ccgcctgacc attattgact gggtgcgcga caccattaat gctccggcgg
     9241 aagagcttgg gccggagcaa ctggcgcagc gcgcggtgga tctgctgtgc agcgtcgcgt
     9301 gcgatagcgt cacttaccgt atcaccaaag gcgaagatct gcgcgagcag aactatatgg
     9361 ggttgcatac cgtaggccgt ggttctgagc gtccgccggt actgctggcg ctggattaca
     9421 acccgacggg agacaaagat gcgccggttt atgcctgcct ggtcggtaaa ggtatcacct
     9481 ttgactccgg cggttacagt atcaaacaaa gcgcttttat ggactcaatg aaatccgata
     9541 tgggcggcgc ggcgacagta acgggcgcgc tggcgttcgc cattacccgt gggctgaata
     9601 aacgcgtaaa actgttcctg tgctgcgctg ataatctgat cagcggcaac gcgtttaaac
     9661 tgggcgatat tattcgctac cgtaatggca agaatgtcga agtcatgaat accgatgcgg
     9721 aagggcgact ggtactggcg gatggcctga ttgacgccag cgcgcaacac ccgcggctaa
     9781 tcattgatat ggcgacgtta accggcgcgg cgaaaacggc gctgggtaac gactaccatg
     9841 cgctattcag ttttgacgat acgctggcgg ggcgcttgct gaccagcgcg gcgcaagaga
     9901 atgagccgtt ctggcgtctg ccgctggcgg agttccaccg taaccaactg ccgtctaact
     9961 ttgcggaact gaacaacacc ggcagcgcga cgtatcccgc cggggcaagc accgccgcgg
    10021 gttttctgtc gcactttgtt gaaaattacc gcgaaggctg gctgcacatt gactgttccg
    10081 ccacttatcg caaagcgccg gttgagcagt gggctgccgg ggcaaccggt ctgggtgtgc
    10141 gcaccatcgc gaatctgctg accgcctgaa cggtgttttt gtaggccggg taagcgaagc
    10201 gccacccggc attttgcctg atggcgacgc cgtgcgtctt atcaggccta caacccatat
    10261 acataatttg tgattcctat gtccgaaact aaaaatgaat tagaaatttt gctggagaaa
    10321 gcggcgactg agcccgcgca tcgttcggca tttttccgta ccttactgga gtccaccgtc
    10381 tgggtgccgg gcagcgctgc cgaaggcgag gcgattgtgg aagacagcgc tctggatttg
    10441 cagcactggg aaaaagaaga cggcacgacc gtcattccct tctttacttc tctggaggcg
    10501 ctgcagcagg ccgtggaaga cgaacaggcg tttgtggtga tgccggcgcg cacgctgttt
    10561 gaaatgacgc ttggcgaaac gttattcctc aacgctaaat tgccgaccgg caaagagttt
    10621 atgccgcgtg aaatcagcct gcttctcgct gaggaaggca gtccgttaag tacgcaggaa
    10681 gtgctggaag gcggcgagtc gcttatttta tccgaagtgg ccgagccgcc gtcgcagatg
    10741 attgattccc tcactacgct gtttaaaacc atcaaaccgg tgaaacgcgc atttctctgc
    10801 gcgattaaag aacatgcgga cgcccaacct aatctgctga ttggcattga ggctgacggc
    10861 gaaattgaag agatcattca cgcagcgggc aatgtggcga ccgacacgtt accgggtgac
    10921 gaaccgatcg atatttgtca ggtgaggaag ggcgcgcagg gtatcagcca ctttatcacc
    10981 gagcatatcg cgccgttcta cgagcgtcgt tggggtgggt tcctgcgcga ttttaaacag
    11041 aaccgcatca tctgaagaaa agaaagccgc ccaacagggc ggcctcctgg cttacctgct
    11101 ctggacgttg agcgttacgg gaacagaatt acctgggtag cttctgtctg cgtgaagaca
    11161 caacgtgcca gaaacaagaa gcacgacaca aaagcatcgt accttcatgt tgcggtcctt
    11221 gcgaagaccg catcacggca gcaccgctgg cgataatgcc gtgatagcag gcactgtggt
    11281 gtgcctgcgc ttacggccat ggaacatcct ctcctgaagc cagtgcccgt ttgcgagacg
    11341 gcgaaggggg ccgggaaaga taatacctca aatgctgaat agtttcgtcg tgaattaact
    11401 tgactttgct ctccttaaaa gggagtattt acctactgtg gtgtgcctgc gttgctatgg
    11461 caacaaagcc tgctggaaag gccgcgaacc ggaccagcac aaaaaaaccg ctcaactgag
    11521 cggttttttt gtggcctgct taaacagtat ttatgtagat tcgttttaaa tcagcctgaa
    11581 cggtaggccg gataagcgtg agcgccaccc gacagcatgt cgattaatcg acgagcgcgt
    11641 ccagttttgc ccaaaacgcc tcatgataat cctccaggtc aagtaaagcg gcatcgcgtt
    11701 gttcattcat tttttgctgt gccttccatt gcggaagatg taaatcctct tcggtaaagc
    11761 caatgtcttt agcgcccgaa ataatattat agagatattc caccagagaa gactccgcca
    11821 gccaaaattc attacgttcc atgcgggcaa tagggtattc gccgttggca tcccgttctg
    11881 tgatatagat aaaaatggcc tgatcgccga catgatcaat acgaattaat gccggaagac
    11941 ggggatcgtt actccagaca ggcatcagat cttcaatatc aatacctgag ctatccatgc
    12001 cagcgccgta atacgcctct tcatcaggag agtaagaatg tattactccc tcgttatcaa
    12061 taaatctttg taatgtttca atcacaggca tattataatt gctaagtaga tcgcggtcgt
    12121 aggccagtag cgccttcagg ctttcaggta actcagtggt ttccgtattt tgcggatcgc
    12181 gatacttacg cactcgcaga caacttattt cctcggcagg cataggatta ggcaccttat
    12241 tgcggttaac ctttttaact agctccatta aattagtgag tgaaatatcc attttccatc
    12301 cttaaaaaat tatatttaca ggagttattt cccggtgaaa cccaaaacag cggtgatgat
    12361 actccttata cccgacgtaa agtatttacc gataaaaaat aggattttat taagagaaaa
    12421 taatgcccgt ttgcaggaca gtggaaaaga gcggaataaa aacaatgtct gtagatcgtt
    12481 ttacatcagc ctgaacggta ggccggataa gcgtgagcac catccggcat ggcggatatt
    12541 aagcgggttc aaccggtaaa tcggtacgcg cgccccattc gctccacgcg ccgtcgtaaa
    12601 gcgtgacgtc aggcacatcc agcgtggcga gtgccagcac cacgaccgcg gccgtcacgc
    12661 cggaaccgca actggcgata atcggtctgt cgaaactcac gccgtggctg aaaaaaacct
    12721 cattcagttc gtcagtggtc tttaattcgc cctcatacac cagttccgtc cacgggacgt
    12781 ttagcgcgcc aggaatgtgt ccgcgtctca gtcccggacg cggttcatca gcctgagcgt
    12841 taaaacgcgc cgccggacgc gcgtcgacga tttgcgcggt tttttcatgg cttgccagca
    12901 atacgtcggt gagacgcacc acggcttgcg gcgtgaattt cgcctcaaac tcgcctcctt
    12961 catgcgcttc ttcgccttcg cgcaatagcc attcgtcgcg ctgccagccc gccagtccgc
    13021 ccgccagaat ggacactttc tcggcaccga acgtgcgcag catccaccat gctcgcggag
    13081 cggagaacag attgccttca tcgtatatga ccaggtgttt atcctggcga acacccagtt
    13141 cacgcatggc caccgcaaac gcttccgggc gcggcatcat atgcggcagc ggcgatgcgc
    13201 gatcggaaag cgcttcaata tcaaaaaaca gcgcgccggg aatatgtccg gcgcgatatt
    13261 cgcccgccat atcacgatgt tcctgtcctg gtggcgccat acgggcgtca agaatctgta
    13321 tttccggatc atcaatatgt tcggcaagcc agtcggcggc gacaaaaaag gcggtggtca
    13381 tgggcatctc cattgttacc tgattatggt caaattgtcg gacgtttccc gaaaagggac
    13441 aagtagaaga ggctgttttg gctggcgaaa ccacatttct gcgtaaaatt ttcgcgtcat
    13501 cacagtaata cggacttaca caataaaatt tctcgcgcat aatatctcat caaccgttgc
    13561 tgacaggccg ttaaggccag ggatgaaaga tgaaacattt acgcgtggtg gcctgcatga
    13621 tcatgctggc gctggcggga tgcgataaca acgataaaac cgccccgacg actaaaagcg
    13681 aagcgccagc cgtagcgcag ccctcgcccg cgcaagaccc gtcacagcta caaaagctgg
    13741 cgcagcaaag ccagggcaaa gcgctcacgc tattagacgc ctccgaagcg cagctcgacg
    13801 gcgcggcgac gctggtgctg acgttttcaa ttcctttaga tcctgaacag gatttctccc
    13861 gtgtggttca cgtggttgat aagaaaagcg gcagcgttga cggcgcatgg gagctggcgc
    13921 caaatttaaa agagctaagg ttacgtcatc tggaacctga gcgcgtgctg gtggtcacgg
    13981 ttgatcccgc cgttaaagcg ctgaataacg ccaccttcgg caagtcttat gaaaaaacga
    14041 ttaccacgcg tgatgtccag cccagcgtcg gctttgccag ccggggatcg ctgctaccgg
    14101 ggaaaatagc ggaaggactg ccggtcatgg cgcttaacgt caaccacgtt gatgtgaact
    14161 ttttccgcgt taagcccgga tcgctggcgt cgtttgtcag ccagtgggag taccgtagtt
    14221 ccctctctaa ctgggaatcc gacaatctgc tgaaaatggc ggatctggtt tataccggtc
    14281 gttttgatct taatccggcg cgtaatacgc gtgagaaact gctgctgcca ttaagcgata
    14341 ttaagccgct gcaacaggcg ggcgtatatg tggcggtaat gaatcaggct ggacactaca
    14401 actatagtaa tgccgctacg ttgtttaccc ttagcgatat cggcgtgtcc gcgcaccgtt
    14461 accatagtcg gctggatatc tttacgcaaa gcctggaaaa cggcgcggcg cagtcgggaa
    14521 ttgagatcgt tcttctgaat gataaagggc agacgctggc gcaggcgacg agcgacgcgc
    14581 agggacatgt gcaactggag gctgataaag cggcggcgct attactggcg cgtaaagagg
    14641 ggcagaccac gctgctcgat ctcacgcttc cggctctgga tctgtcggag tttaatgtcg
    14701 ctggcgcgcc cggctacagc aagcagttct ttatgttcgg cccacgcgat ctctaccgac
    14761 cgggcgaaac ggttatcctc aacggattac tgcgcgatag cgacggtaaa acgctgcccg
    14821 atcaacccgt taagctggaa gtggtaaaac cagacggaca agtgatgcgt accgtcgtca
    14881 gccagccgga aaacggacta taccgtttga attatccgct ggatatcaac gcgccgaccg
    14941 gcttgtggca tgtccgcgcc aacaccggcg ataatttgct gcggagttgg gatttccacg
    15001 tggaagactt tatgccggag cggatggcgc tcaacctgac ggcgcaaaaa acaccgctgg
    15061 cgcctgcgga tgaggtgaaa ttctccgttg tcggctatta cttgtatggc gcccctgcta
    15121 acggcaatac cctgcaaggg caacttttcc tgcgtccgct gcgcgacgct gtcgcggcgt
    15181 tgcctggctt ccagttcggc aatattgccg aagagaatct ttcgcgcagc ctggacgaag
    15241 ttcaactgac gttggataaa ggcggacgtg gtgaagtgag tgctgccagc cagtggcaag
    15301 aagcgcattc gccgttgcag gtaattctac aggccagcct gctggagtct ggcggtcgtc
    15361 cggtcactcg tcgcgtagag caggcgattt ggcctgccga tacgttaccg ggaattcgtc
    15421 cacagttcgc cgccaaagcg gtatacgact accgtacgga taccaccgtt aatcaaccga
    15481 ttgtcgacga agacagcaac gccgcattcg atattgttta cgccaacgcg cagggcgaga
    15541 aaaaagcggt gtccggttta caggtgcggc tcatccgcga gcgtcgcgac tattactgga
    15601 actggtcgga aagcgaaggc tggcagtcgc agtttgatca aaaagatctg gtggagggcg
    15661 agcagacgct ggatctgaac gcggatgaaa ccggaaaagt cagcttcccg gtggaatggg
    15721 gcgcgtaccg tctggaggtc aaagcgccga atgagacggt cagcagcgtt cgtttctggg
    15781 ccggctatag ctggcaggat aacagcgacg gtagcggcgc ggcgcgtccg gatcgcgtca
    15841 ccctcaaact ggataaagcg aattatcgtc caggcgacac catgaaattg catatcgccg
    15901 cgccggtcgc cggtaaaggt tatgccatgg tggagtccag cgatggtccg ctgtggtggc
    15961 aggcgatcga cgtgccggcg caggggctgg agctcacgat tccggtggat aaaacctgga
    16021 atcgccacga tctctatctc agtacgctgg tggtgcgtcc cggcgataaa tctcgttccg
    16081 cgacgccaaa acgcgccgtg gggttactac atctaccgct gggggatgac aaccgccgcc
    16141 tcgatctggc gctggaaagc ccggctaaaa tgcgcccgaa tcagccgctc accgtcaggg
    16201 tgaaagccag cgttaaacac ggcgaaatgc caaaacagat caacgtgctg gtctccgcgg
    16261 tcgatagcgg tgtattgaat atcaccgatt acgcgacgcc ggacccgtgg caggcgttct
    16321 tcggtcaaaa acgctacggt gcggatatct acgatattta cggccaggtc attgaagggc
    16381 aggggcggct ggcggcgttg cgttttggcg gcgatggcga cgaccttacg cgcggcggaa
    16441 aaccgccggt aaaccatgcc aatatcatcg cgcagcaggc gcagccgatc acgctcaatg
    16501 agcagggcga aggggtcgta acgctgccga ttggcgactt taacggcgaa ctgcgggtta
    16561 tggcgcaggc atggacagcg gacgattttg gtcgcggcga aagcaaagtc gttgtcgccg
    16621 cgccagtgat tgccgagctg aatatgccgc gttttctggc gggaggggat gtttcgcgac
    16681 tggtgctgga cgtcaccaat ctgaccgacc gcccgcagac gctgaatatt gcgctcgccg
    16741 ccagtgggtt actggaactg cttagtcaac agccgcaacc ggtcaacctg gcgccgggcg
    16801 tgcgcaccac cttattcgtt ccggtacgcg cgctggaagg ttttggcgaa ggcgaaatcc
    16861 aggcgaccat tagcggtctg aatctgccgg gagaaaccct cggcgcgcag cataagcagt
    16921 ggcaaatcgg cgtgcgtccg gcctggcctg cccaaacggt aaatagcggc attgcgctgg
    16981 cgccgggaga gagctggcat gtaccagagc agcatctggc aaacgtctcg ccagccacgt
    17041 tacagggaca actgctgtta agcggaaaac cgccgctcaa tctggcgcgc tacattcgcg
    17101 agctgaaagc atatccgtac gggtgcctgg aacaaaccac cagcgggtta ttcccggcgc
    17161 tgtataccaa tgccgctcaa ttgcagtcgc tcggtattac cggcgatagc gatgaaaaac
    17221 ggcgcgccgc ggtggatatc ggcatctccc gcatactaca gatgcagcgt gataacggcg
    17281 gttttgcgct atgggatgaa aatggggcgg aagagccctg gctaacggcc tacgcgatgg
    17341 atttcctcat tcgcgcgggc gagcagggat atagcgtccc gccggaggcc attaaccggg
    17401 gcaatgagcg actgctgcgc tatctgcagg atcccggtac gatgctgatt cgttatagcg
    17461 ataataccca ggccagtact tttgccgctc aggcttacgc cgcgctggta ctggcgcgtc
    17521 agcagaaagc gccgctcggc gcgctgcgcg aaatctggga gcgccgtagt caggcggctt
    17581 caggactgcc gctgatgcaa ttgggcatcg cgttaaacac gatgggtgat gccagacgcg
    17641 gcgaagaggc cattacgctg gctctgaata cgccgcgtca ggacgaacgg caatggatag
    17701 cggattacgg cagttctctg cgcgataacg ctctgatgtt gtcgttactg gaagagaaca
    17761 acctcagacc ggacgcgcaa aacgcgctat taagctcgct ttctgagcag gccttcggtc
    17821 agcgctggct ctctacccag gagaacaatg ccttgttcct cgccgcgcat tcgcgacagg
    17881 ccagcgcggg cgcctggcag gcgcagacct cgttagaggc gcagccgctg tcgggcgaca
    17941 aggcgctgac ccgtaatctg gatgctgatc agctggccgc ccttgaggtg acgaacaccg
    18001 gtagccagcc gctatggctg cgtctggata gcagcggcta tccctcatct gcgcctgagc
    18061 ctgccagcaa cgttttgcag attgaacgac aaatactggg gaccgatggt cagcgcaaat
    18121 cgctgtcctc gttgcgtagc ggcgaactgg tgctggtctg gttaacggta gtggccgatc
    18181 gcaatgtgcc ggatgcgctg gtggtggacc tgctcccggc cgggctggag ctggaaaacc
    18241 agaatctggc tgacagcagc gccagcctgc cggagagcgg tagcgaagtg caaaatctgc
    18301 ttaatcagat gcagcaggcg gatattcagt atatggaatt ccgcgacgat cggtttgtgg
    18361 ctgccgtcgt tgtcaatgag ggccagcccg tgacgctggt ctacctggcg cgcgcggtaa
    18421 cgccggggac gtaccagctt gcgcaaccgc aggtggaatc gatgtacgcg cctcagtggc
    18481 gggcaaccgg cgcgagcgag ggactgctga ttgtgacgcc ttaaatgaac ggttggcgtg
    18541 gtaaacgtgg ccgctggctg tggctggcgg gcgcgccgct ttttattttc ctggcgttat
    18601 gggcagcgga taaactctgg ccgctgccgc tcaatgaggt ccatcctgcg cgggtcgtgg
    18661 tcgcccatga cggtacgccg ctgtggcgct ttgccgacgc cggggggatc tggcgttatc
    18721 cggtgacgat tgaagaggtc tctccccgtt acctggaggc cttaatcaat tacgaagatc
    18781 gctggttctg gcagcaccct ggcgttaacc ctttttccgt cgcgcgcgcg gcatggcagg
    18841 atcttaccgc cgggcgcgtt atttccggcg gcagtacgct gactatgcag gtggcgagac
    18901 ttctggaccc gcattcgcgc acgttcggcg gtaaaatccg ccagctttgg cgcgccctcc
    18961 agcttgaatg gcatttgtcc aagcgcgata tcctgacgtt gtacctgaac cgcgcgccgt
    19021 tcggcggcac gctacagggt attggcgctg caagctgggc ctacttcggc aagccgcccg
    19081 cgcgcctgag ctacgctgac gcggcgctgc tggccgtatt gccgcaggcg ccgagccggt
    19141 tacgccccga ccgatggcct acgagagccg aagcggcacg gaataaagtg ctggatcgga
    19201 tggcggagca gggcgtctgg cctgccgaaa cggtacgcga gtcgcgtgaa gagccggtct
    19261 ggctggcgcc gcgtcaaatg ccgcaactgg cgccgctttt tgcccgaatg atgttgagta
    19321 aaagccggag cgacaaaatt gtgaccacgc tggacgccgg gttgcagcgg caactggaag
    19381 atctggcgcg ggcatggaaa gggcggctgc ctgcacgcag ttcattggcg atgatcgtcg
    19441 tcgatcatac cgatatgagc gtgcgcggct gggtaggatc ggtagacctt aatgacgaca
    19501 gccgttttgg tcatgtcgac atggtaacgg cgatccgatc gccgggatcg gtactcaaac
    19561 cctttgtgta tggtctggcg ctggatgacg gcttgatcca tcccgcatca ctattacagg
    19621 acgttccgcg ccgcaccgga gattaccgcc cgggaaactt cgatagcgga tttcacggcc
    19681 cggttagcat gagcgacgcg ctggtacgct cgctgaatct gcctgccgtt caggtgcttg
    19741 aagcctatgg gccgaaacga tttgcggcaa aactgcgtaa cgtcggcctg ccgctatatt
    19801 tgcctgctgg cgcggcgccc aatctttcgc tgattctggg cggcgcgggc gcgcggcttg
    19861 acgagatggc ggcggcatac agcgcgttcg ctcgtcatgg gaaagcggcg aaactacggt
    19921 tacagccgga cgatccgctg tcggaaagac cattaatgtc gccgggagcg gcgtggatca
    19981 ttcgacggat tatggcggat gaagcgcaac ccttgccgga taacgcgctg ccgcgcattg
    20041 tgccgttggc gtggaaaacc ggcaccagct acggctatcg cgatgcgtgg gctattggcg
    20101 ttaacgcgcg ctatatcatc ggcatctgga caggcagacc cgacggcacg cctgtggtgg
    20161 ggcaatttgg ttttgccagc gcggtgccat tgcttaacca ggtcaataat ctgttactgg
    20221 cgcatacggg acgcctgccg gaagatccgc gtccgcagac ggtaagccgc ggcgtcattt
    20281 gctggccggg cggacagact ctgcctgccg ggaacagcaa ctgtcgccgc cgactggcga
    20341 catggctgct tgacgacagc cagccgccca cgctgctgtt acctgagcag gaagacatca
    20401 acggtattcg tttcccggtc tggctggatg atacggggcg gcgtgtcgct gccgactgtc
    20461 cgcaggcgcg tgcgcatacg tttatcgtct ggccgcggcc gctggagccg tggctgccgc
    20521 ctgcggaaag acgtagcgcc cgcttgcccg cggcgtccga ccactgtccg ccgctacagg
    20581 gcaatgatgc cgcgccgtta atgctgtcag gagtgaggga tggcgcggtg atcaggcaat
    20641 tgccaggcca ggaaaacgtc acgctgcccg tctcgactac cggcggcaaa gggcgtcgct
    20701 ggtggttttt aaatggcgaa cctgttaatg gcgaaaataa tcgcctttct ttattactca
    20761 atatcgctgg acgttatcaa cttgtcgtaa tggatgagtc cggtcaggtt gcagcggtta
    20821 attttgaatt aatacgttaa ccattctcca aaatagatta tcaattcctt ttaattta
//
LOCUS       DAJVSD010000056        20431 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.056, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000056 DAJVSD010000000
VERSION     DAJVSD010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 20431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20431
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.056"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(75..590)
                     /gene="mobB"
                     /locus_tag="OQP62_001702"
     CDS             complement(75..590)
                     /gene="mobB"
                     /locus_tag="OQP62_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HCS1721282.1"
                     /translation="MIPLLAIAAWSGTGKTTLLKKLIPALCAHGIRPGLIKHTHHDMD
                     VDKPGKDSYELRKAGAAQTLVASQQRWALMTETPGQEELDLAWLVSRMDASKLDLVLV
                     EGFKHEAVAKILLFRQGCGHSEEELILDEHVIAVASDIPLAVAVPVLDLNDVSQISAF
                     ILRWLEKARSL"
     gene            complement(587..1171)
                     /gene="mobA"
                     /locus_tag="OQP62_001703"
     CDS             complement(587..1171)
                     /gene="mobA"
                     /locus_tag="OQP62_001703"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase MobA"
                     /protein_id="HCS1721283.1"
                     /translation="MNLDEVITGVVLAGGKARRMGGADKGLLELDGKPLWRHVADALA
                     PQLATVVISANRHLDIYQASGLKVIPDSIADFPGPLAGMLSVFQQVAGDWFLFCPCDN
                     PCIPHNLVDRLAAHRHGAPVVWVHDGERDHPTIALINRAVEPQLTAYLQAGERRVMIF
                     MRQVGGHAVDFSDCKEAFVNVNTPEELAQWQKRP"
     gene            1241..1510
                     /locus_tag="OQP62_001704"
     CDS             1241..1510
                     /locus_tag="OQP62_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihD family protein"
                     /protein_id="HCS1721284.1"
                     /translation="MKCKRLNEVIELLQPAWQKEPDLNLTQFLQKLAKESGFDGKLED
                     LTDDILIYHLKMRDSAKDAAIPGIQKDYEEDFKTALLRARGVIKE"
     gene            1587..2573
                     /locus_tag="OQP62_001705"
     CDS             1587..2573
                     /locus_tag="OQP62_001705"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HCS1721285.1"
                     /translation="MNDNAFTFQTLHPETIMDALFEQGIRVDSGLTPLNSYENRVYQF
                     QDEDRRRFVVKFYRPERWSVDQIREEHQFALELVKDEVPVAAPLAFNGQTLLAHQGYH
                     YAIFPSVGGRQFEADNIDQMEAVGRYLGRLHQTGRKRPFTFRPDIGLAEYLFEPRQVF
                     EDAALIPSGQKAAFLKATDTLLSAVTECWRTDFATLRLHGDCHAGNILWRDGPLFVDL
                     DDARNGPAIQDLWMLLNGNKAEQRMQLETIIEAYEEVSEFDTAEIGLIEPLRAMRLVY
                     YLAWLIRRWGDPAFPKNFPWLTGEDYWQRQTTTFIEQTKILHEPPLQLTPMY"
     gene            2590..3213
                     /gene="dsbA"
                     /locus_tag="OQP62_001706"
     CDS             2590..3213
                     /gene="dsbA"
                     /locus_tag="OQP62_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA"
                     /protein_id="HCS1721286.1"
                     /translation="MKKIWLALAGMVLAFSASAAQISDGKQYITLDKPVAGEPQVLEF
                     FSFYCPHCYQFEEVLHVSDNVKKKLPKGTKMTKYHVEFLGPLGKELTQAWAVAMALGV
                     EDKVTVPLFEAVQKTQTVQSAADIRKVFVDAGVKGEDYDAAWNSFVVKSLVAQQEKAA
                     ADLQLQGVPAMFVNGKYQINPQGMDTSSMDVFVQQYADTVKYLVDKK"
     gene            complement(3226..4134)
                     /locus_tag="OQP62_001707"
     CDS             complement(3226..4134)
                     /locus_tag="OQP62_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HCS1721287.1"
                     /translation="MTRILAAITLPLSIVLTILVTIVCSVPIIVAGMVKLLLPVPGIW
                     RKVSIFCNFMMYCWCAGLAALLRLNPHLQWDVEGLEGLSKKNWYLLICNHRSWADIVV
                     LCVLFRKHIPMNKYFLKQQLAWVPFIGLACWALDMPFMKRYSRSYLLRHPDRRGKDVE
                     TTRRSCEKFRRYPTTIVNFVEGSRFTHEKRQQTHSPYQHLLPPKAAGIAMAINVLGSQ
                     FDKLLNITLCYPNNDRHPFYDMLSGRLTRIVVRVQLEPINEELHGDYVNDKTFKRRFQ
                     RWLNTLWDKKDIQIEEIKTSYKNAGQ"
     gene            4522..7308
                     /gene="polA"
                     /locus_tag="OQP62_001708"
     CDS             4522..7308
                     /gene="polA"
                     /locus_tag="OQP62_001708"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HCS1721288.1"
                     /translation="MVQIPENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLN
                     MLRSLIMQYQPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAM
                     GLPLLAVSGVEADDVIGTLAREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTIL
                     GPDEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEP
                     EKIAGLTFRGAKTMAGKLAQNKDVAYLSYKLATIKTDVELELTCEQLEVQQPIADELL
                     GLFKKYEFKRWTADVEAGKWLQAKGAKPAAKPQETVVIDESPSEPAAALSYENYVTIL
                     DDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDA
                     PDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIELRGIAFDTMLESYILN
                     SVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL
                     HLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL
                     EKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLP
                     KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVR
                     NEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAE
                     VFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYPGV
                     LEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPMQGTAADII
                     KRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCTRIDVPL
                     LVEVGSGENWDQAH"
     gene            complement(7644..8276)
                     /locus_tag="OQP62_001709"
     CDS             complement(7644..8276)
                     /locus_tag="OQP62_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HCS1721289.1"
                     /translation="MTNLNYQQTHFVMSAPDIRHLPSDCGIEVAFAGRSNAGKSSALN
                     TLTNQKSLARTSKTPGRTQLINLFEVVDGKRLVDLPGYGYAEVPEEMKRKWQRALGEY
                     LEKRQSLQGLVVLMDIRHPLKDLDQQMIQWAVESNIQVLVLLTKADKLASGARKAQLN
                     MVREAVLAFNGDVQVEAFSSLKKQGVDKLRQKLDSWFSELAPVEEIQDGE"
     gene            8516..8740
                     /locus_tag="OQP62_001710"
     CDS             8516..8740
                     /locus_tag="OQP62_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721290.1"
                     /translation="MSLPQKSKVMHIARTLTGSTTQDEGQERQEAKTQDCQEDKRPET
                     LVKGNGNNMECSRLREKQGVLIANRDGGTR"
     gene            8859..9374
                     /gene="yihI"
                     /locus_tag="OQP62_001711"
     CDS             8859..9374
                     /gene="yihI"
                     /locus_tag="OQP62_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Der GTPase-activating protein YihI"
                     /protein_id="HCS1721291.1"
                     /translation="MKKPTSAPRSKAFGKQRRKTREELNQEARDRKRLKKHRGHAPGS
                     RAAGGNSASGGGNQNQQKDPRIGSKTPVPLGVTEKVTQQHKPKSEKPMLSPQAELDLL
                     ETDERLDALLERLEAGETLSAEDQAWVDAKLDRIDELMQKLGLSYDDDEEDDEEDEKQ
                     EDMMRLLRGGN"
     gene            9563..10936
                     /gene="hemN"
                     /locus_tag="OQP62_001712"
     CDS             9563..10936
                     /gene="hemN"
                     /locus_tag="OQP62_001712"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HCS1721292.1"
                     /translation="MSEQQIDWDLALIQKYNYSGPRYTSYPTALEFSEDFEDAAFLQA
                     VARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIRHRAPLFAD
                     RHVSQLHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEVDPREIELDVLDHLR
                     AEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDIGFTSTNIDLIYGLPKQT
                     PESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVS
                     LTQAGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGD
                     GYMQNQKELKRYYQQVDERGNALWRGITLTRDDCIRRDVIKALICNFRLDFNAVEQQW
                     GLHFAEYFAEDLQLLSPLAKDGLVDISEKGIQVTAKGRLLIRNICMCFDAYLRQKARM
                     QQFSRVI"
     gene            complement(11026..11136)
                     /locus_tag="OQP62_001713"
     CDS             complement(11026..11136)
                     /locus_tag="OQP62_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YshB family small membrane protein"
                     /protein_id="HCS1721293.1"
                     /translation="MLESIINLVSSGAVDSHTPQTALAAVLCAALVGLFS"
     gene            complement(11249..12658)
                     /gene="glnG"
                     /locus_tag="OQP62_001714"
     CDS             complement(11249..12658)
                     /gene="glnG"
                     /locus_tag="OQP62_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(I)"
                     /protein_id="HCS1721294.1"
                     /translation="MQRGIVWVVDDDSSIRWVLERALAGAGLTCITFENGNEVLAALA
                     SKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL
                     PKPFDIDEAVALVERAISHYQEQQQPRNIEVNGPTTDMIGEAPAMQDVFRIIGRLSRS
                     SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT
                     GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI
                     IAATHQNLERRVQEGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLQVAARELG
                     VEAKLLHPETETALTRLAWPGNVRQLENTCRWLTVMAAGQEVLTQDLPGELFEASAPD
                     SPSHLPPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAAK
                     LLGWGRNTLTRKLKELGME"
     gene            complement(12667..13716)
                     /gene="glnL"
                     /locus_tag="OQP62_001715"
     CDS             complement(12667..13716)
                     /gene="glnL"
                     /locus_tag="OQP62_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(II)"
                     /protein_id="HCS1721295.1"
                     /translation="MASGIQPDAGQILNSLINSVLVVDDALAIHYANPAAQQLLAQSS
                     RKLFGTPLPELLSYFSLNIDLMRESLAAGQGFTDNEVTLVIDSRSHILSLTAQRLPDD
                     FILLEMAPMDNQRRLSQEQLQHAQQIAARDLVRGLAHEIKNPLGGLRGAAQLLSKALP
                     DPALTEYTKVIIEQADRLRNLVDRLLGPQHPGMHITESIHKVAERVVALVSMELPDNV
                     RLIRDYDPSLPELPHDPEQIEQVLLNIVRNALQALGPEGGEITLRTRTAFQLTLHGER
                     YRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHAGKIEFTS
                     WPGHTEFSVYLPIRK"
     gene            complement(13991..15400)
                     /gene="glnA"
                     /locus_tag="OQP62_001716"
     CDS             complement(13991..15400)
                     /gene="glnA"
                     /locus_tag="OQP62_001716"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--ammonia ligase"
                     /protein_id="HCS1721296.1"
                     /translation="MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFF
                     EEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYD
                     RDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWN
                     SSTKYEGGNKGHRPGVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAG
                     QNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLA
                     KNGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLA
                     YSARNRSASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEA
                     MDKNLYDLPPEEAKEIPQVAGSLEEALNALDLDREFLKAGGVFTDEAIDAYIALRREE
                     DDRVRMTPHPVEFELYYSV"
     gene            15776..17599
                     /gene="typA"
                     /locus_tag="OQP62_001717"
     CDS             15776..17599
                     /gene="typA"
                     /locus_tag="OQP62_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-dependent GTPase TypA"
                     /protein_id="HCS1721297.1"
                     /translation="MIENLRNIAIIAHVDHGKTTLVDKLLQQSGTFDARAETQERVMD
                     SNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAF
                     DGPMPQTRFVTKKAFAHGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF
                     PIIYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPLQMQISQLDYNNYV
                     GVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLTHLGLERIDSDIAEAGDIIAI
                     TGLGELNISDTICDPQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDR
                     LNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREI
                     DGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIG
                     FRSEFMTMTSGTGLLYSTFSHYDDIRPGEVGQRQNGVLISNGQGKAVAFALFGLQDRG
                     KLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVILVPPIKMSLE
                     QALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRGQKEE"
     gene            complement(17654..18388)
                     /locus_tag="OQP62_001718"
     CDS             complement(17654..18388)
                     /locus_tag="OQP62_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HCS1721298.1"
                     /translation="MRYRLIAFDLDGTLLNRNKQILPESLTAIRQMQDMGCRIMLVTG
                     RSHREAYAYYQTLALTEPMICCNGSYIYQPAQQQILDPLPLTHLQTEKILARVYPLKP
                     TIRADDKIIFQADELSSRENIWQISVVHRHIKQLQNIAEFIQHELQLSCTWSWHHQLD
                     ILQKGCSKGQSLARYAQQQHIAMREVMAFGDNDNDAEMLRLAGLGVAMGNASARAKVY
                     ADSVIGRHNTPTIADFLTTLSLSQRE"
     gene            complement(18373..19251)
                     /locus_tag="OQP62_001719"
     CDS             complement(18373..19251)
                     /locus_tag="OQP62_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STM4011 family radical SAM protein"
                     /protein_id="HCS1721299.1"
                     /translation="MSIPALRDIHTLFYRGYLKSCNYHCGYCPFHKHARNDKKRDEAA
                     LWRMVDHLPLLGTPLNVMITPYGEALRLRYYMAALADISRYPHVQAVGIQTNASFSLM
                     SLLESFRAGGGDISKLRLWCSFHPSQITAERFLQQCLALSAAGITWCAGAVASMKDID
                     QFRWLRQRLPDQNYFWFNANECANTRHTVEETIAFSELDPLYVVETQQWPAQLDICTA
                     GRKSIFMNAEGDLFACHISKIKMGNLYQQRLNSPACQAKQCHCFLAYQHRLDIPLLNH
                     LDASRCFRIGRSCDIV"
     gene            complement(19248..20431)
                     /locus_tag="OQP62_001720"
                     /pseudo
     CDS             complement(19248..20431)
                     /locus_tag="OQP62_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462892.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="STM4012 family radical SAM protein"
BASE COUNT         5065 a         5139 c         5405 g         4822 t
ORIGIN      
        1 aaaaatgtag gcctgataag cgcagcgcca tcaggcaacc tgcaccgccg gatggcggct
       61 ccgccttatc cggcctacaa ggaacgtgct ttctctaacc accgcaaaat gaaggcagaa
      121 atctgcgata catcattaag atccaaaacg ggtaccgcta cggcaagtgg aatatcactg
      181 gcaaccgcaa taacatgctc atcaagaatt aattcttcct cgctgtgccc acatccctga
      241 cgaaaaagta agatcttcgc aactgcttcg tgtttaaacc cttcaacaag caccagatcc
      301 agttttgatg catccatccg gctcaccagc catgccagat ccaactcttc ttgccccggc
      361 gtttccgtca ttaacgccca gcgctgctga ctggcaacca gcgtctgtgc cgccccggct
      421 ttacgcagct cgtagctatc tttacccggt ttatcgacat ccatatcatg atgggtatgc
      481 ttaatcagcc ctggccgaat accgtgcgca caaagtgctg ggatcagttt tttcagcagt
      541 gttgtttttc ccgtgccgct ccatgcggca atggcgagta gcggtatcat ggtctctttt
      601 gccattgcgc gagttcctcc ggcgtgttga cgttcacaaa tgcctcctta caatcgctga
      661 aatcaacggc gtgtccgcct acctggcgca taaaaatcat tacccgccgc tcgcctgctt
      721 gcaaataagc tgtcaactgg ggctcaacgg cacgattaat caacgcgatc gttggatgat
      781 cgcgttctcc atcatgaacc caaaccacgg gtgcgccatg acgatgcgct gctaaacgat
      841 cgaccaggtt gtgggggata caaggattgt cacagggaca aaacagaaac cagtcgcctg
      901 ctacctgctg aaaaacggaa agcatacccg ccagcggacc gggaaagtca gcgattgaat
      961 ccggaatgac tttcaggccg ctggcctggt agatatccag atggcgatta gcactaatta
     1021 cgaccgtagc aagttgtggc gcgagcgcgt cggcaacgtg tcgccagagc ggtttcccgt
     1081 ccagttcaag cagaccttta tccgcacctc ccatccgccg ggctttaccg cctgccagta
     1141 ccacgccggt tattacttca tccagattca ccgatatcgc ctcttttatt gtgggattga
     1201 ccctgctacc gtgtctgtat caagaataag gagcacagct atgaaatgta aacgcttgaa
     1261 tgaagtcatt gaactcctcc agccagcctg gcagaaagag cctgatctta atctgacgca
     1321 atttttgcag aaactggcga aagagtcagg ttttgacggc aaactggaag atttaactga
     1381 tgatatcctg atctaccatc tgaaaatgcg cgattccgcc aaagacgccg ccattccagg
     1441 gattcaaaaa gactatgaag aggactttaa aacggcgctt ttacgcgccc gcggcgttat
     1501 taaagagtaa aaccttgtaa gcggcaccac cgaaatcgcc acgaaatgat atcctgaatc
     1561 attcgtagta ttttccggat gatgggatga acgacaacgc ttttactttc cagacgctac
     1621 acccggaaac catcatggat gcgctgtttg aacaggggat cagggtggat tccgggctga
     1681 ctccactaaa cagttatgaa aaccgcgtct atcagtttca ggatgaagac cgtcgacgtt
     1741 ttgtcgttaa gttttatcgt cctgaacgct ggtctgttga tcaaattcgg gaagaacacc
     1801 aattcgcgct tgaactggtg aaggatgagg ttccggttgc tgctccgctc gcgtttaatg
     1861 gccagacgct gttagcgcat cagggctatc attatgccat tttccccagc gtaggcggtc
     1921 gtcagtttga agcagacaat atcgatcaga tggaggcggt agggcgttat cttggccgat
     1981 tgcatcagac ggggcgaaaa cgtcctttca ctttccggcc tgacattggg cttgcagagt
     2041 atctttttga acctcgccag gtattcgaag atgccgcact gattccctcc gggcaaaaag
     2101 cggctttcct gaaagccact gatactctac tgtctgcggt taccgaatgc tggcgcaccg
     2161 atttcgccac gctgcgattg cacggcgatt gtcatgccgg caacattcta tggcgtgatg
     2221 gaccgctgtt tgtcgattta gatgatgccc gtaacggccc ggcgatacag gatttatgga
     2281 tgctgctgaa cggcaacaaa gccgaacagc gaatgcagct tgaaaccatt attgaagctt
     2341 atgaagaagt tagtgagttc gatacggctg aaattggtct cattgaacct ttacgcgcca
     2401 tgcgtttagt ttattatctt gcctggttga ttcgtcgttg gggcgatcct gcgtttccaa
     2461 aaaactttcc ttggttaaca ggggaagatt actggcagcg acagacaacg acttttattg
     2521 agcagactaa aattttgcac gaaccccctt tacaattaac gccaatgtat taatcggaga
     2581 gagttgatca tgaaaaagat ttggctggcg ctggctggta tggttttagc ttttagcgcc
     2641 tcggcagcac agatcagcga cggtaaacag tatatcacgc tggataaacc ggtcgctggc
     2701 gaaccccagg tactggagtt tttctcattc tactgcccac attgttatca gtttgaagaa
     2761 gtgcttcatg tgtctgacaa tgtgaagaaa aagctgccga aaggcaccaa gatgaccaag
     2821 taccacgttg agttcctggg gccgttgggc aaggagctca cccaggcatg ggcggtggcg
     2881 atggcgttgg gggtagaaga taaagtcacg gtcccgctgt ttgaagccgt acagaaaacc
     2941 cagacagtac aatctgccgc ggatatccgt aaagtgttcg ttgatgcggg cgtaaaaggc
     3001 gaagattacg atgcggcatg gaacagcttc gtggtgaaat cactggttgc gcaacaggag
     3061 aaagccgcgg ctgacctgca actgcagggc gttccggcga tgttcgtcaa tggcaaatac
     3121 cagattaacc cacaaggcat ggataccagc agcatggatg tttttgttca gcagtatgct
     3181 gataccgtga aatatttggt tgataaaaaa taaaaagaac gccggtcact gaccggcgtt
     3241 tttataagat gttttaatct cttctatctg tatatctttc ttatcccaca gcgtattaag
     3301 ccaacgttga aaacggcgtt tgaatgtttt gtcgttcacg taatcgccgt gcagttcttc
     3361 atttatgggt tccagttgca cccgaacaac aatacgcgtc agcctaccgc ttagcatatc
     3421 gtagaagggg tggcgatcgt tgtttgggta acacaacgta atattaagca gcttatcgaa
     3481 ctgtgagcct aaaacattaa tcgccattgc aataccggct gcttttggtg gcaacagatg
     3541 ttgatagggt gaatgcgttt gctgacgttt ctcatgcgta aatcgcgagc cttcaacaaa
     3601 gttaacgata gtggtgggat accgacgaaa cttctcgcaa gagcggcgag ttgtttcaac
     3661 atctttgcca cgtcgatcgg ggtggcggag cagatagcta cgagagtagc gcttcataaa
     3721 cggcatatct aatgcccagc acgccaggcc gatgaacggc acccaggcca attgctgttt
     3781 aagaaagtac ttattcattg ggatatgctt gcggaacaga acgcaaagca caacgatatc
     3841 ggcccagctg cggtgattac aaatcagtaa ataccaattt ttcttgctca gcccttctaa
     3901 cccttctaca tcccattgca agtgcggatt aaggcgtaac agcgctgcaa gaccagcaca
     3961 ccagcaatac atcatgaaat tgcagaaaat ggagaccttg cgccagatac cgggaacagg
     4021 caaaaggagc tttaccatgc cggcaacgat gatcggtact gagcaaacaa tagtgaccag
     4081 gatggttaat acgatactca atgggagcgt gatagccgcg agtattctcg tcataataaa
     4141 ttattcaaaa gttagccata aacggtgtgc gaaaagggcg caagaggctg attctatcag
     4201 aaaacgatgc taatgatggc gctgagtgaa atagaaacac tcgtaacaac tatccacatt
     4261 atgataacgg catgaatcag ataatcagaa aatcgtgatg ttaacaactc attgaaaata
     4321 atgggtaatt attaagagga gaaggctatc gcgctgattt taaagtaatg gtaagaattt
     4381 acacacaaag ttatccacag gttgttttgc gagcgatcct gaagatcgac aaaacttttc
     4441 cgcaaatgcg gcgaaaaact caagttttcc tcctgtatgt ggcatccttt aaccataatc
     4501 tgttaaacag gcacggacat tatggttcag atcccagaaa acccacttat tctcgtagat
     4561 ggctcatcct atctctatcg cgcctatcat gcgtttccgc cgttaaccaa cagcgcggga
     4621 gaacctacgg gcgcaatgta tggtgtcctc aacatgttgc gcagcctgat catgcagtat
     4681 cagccgacgc atgctgcggt ggtgtttgac gccaaaggaa aaaccttccg tgacgagctc
     4741 tttgaacact acaaatcgca tcgtcctccg atgccggatg atctgcgtgc gcaaatagag
     4801 ccgttacatg ccatagttaa agccatgggg ttacctctgc tggcggtctc tggcgtagaa
     4861 gcggatgacg ttatcggtac actggcgcga gaagcggaga aggtggggcg tccggtatta
     4921 atcagcaccg gcgataaaga tatggcacag ttggtgacgc agaatattac gctgatcaac
     4981 accatgacta acaccatcct cggcccggat gaagtcgtta ataagtacgg tgtgccgcct
     5041 gagctgatta ttgactttct ggcgctgatg ggggactcct cggataatat tccgggcgta
     5101 ccaggcgtgg gtgagaagac ggcgcaagcc ttgcttcagg gattgggcgg cctggatacg
     5161 ctgtacgccg agccggaaaa aattgccggt ctcactttcc gcggcgccaa aacgatggcc
     5221 ggtaaattag cgcagaataa agacgtagcg tacctgtctt ataagctcgc caccattaaa
     5281 acggatgttg agctggagct gacctgcgaa cagcttgaag tgcagcagcc gattgcggat
     5341 gaactgctgg gcctgtttaa aaaatatgag ttcaagcgct ggacggcgga cgtcgaggca
     5401 ggcaagtggc tacaggcaaa gggcgcgaaa ccggcggcca aaccgcagga aacggtcgtt
     5461 attgatgaat cgcccagcga accggcagcg gcgctctctt atgaaaatta tgtcacgatt
     5521 ctggatgacg ttacgctgga aagctggatt gaaaagctga aaaaagcgcc agtttttgct
     5581 ttcgacacgg agaccgacag cctggataat atcgccgcca acctggtggg cctctcgttt
     5641 gccatcgaac ctggcgttgc cgcgtatgta cctgtcgcgc atgattatct ggacgctccg
     5701 gatcaaatct cccgccagcg tgctctggaa ctgctgaagc ctctgctgga agatgaaaaa
     5761 gtgcgcaaag tggggcaaaa cctcaagtac gatcgcggcg tcttgcaaaa ttacggtatt
     5821 gagctgcgcg gtatcgcctt cgataccatg cttgagtctt acattctgaa cagcgtcgcc
     5881 ggacgccatg atatggacag cttgtccgat cgttggctga agcacaaaac tatcaccttt
     5941 gaagacattg ccggtaaagg taaaaaccag ctcaccttta accagatcgc actggaggaa
     6001 gcggggcgct atgcggcaga agatgcggat gtcacgttac agttgcatct caaaatgtgg
     6061 cctgagctcc agcagcacaa aggcccgctg aatgttttcg aaaacatcga aatgccgctg
     6121 gtgccggtac tgtcacgcgt tgagcgcaat ggcgtaaaaa tcgatcctgc cgtcctgcac
     6181 aaacattcgg aagaaatcac gctacgtctg gcggaactgg aaaagaaagc gcatgacatt
     6241 gcgggcgagg cgttcaacct gtcctcgacg aagcagttgc agaccatcct gtttgaaaag
     6301 cagggtatta agccgttgaa gaaaacgcct ggcggcgcgc cgtcaacgtc ggaagaggtg
     6361 ctggaagagc tggcgctgga ctatccgctg ccgaaagtga ttctggagta tcgtggtctg
     6421 gcgaagctaa aatccaccta taccgataag ctgccgctga tgattaaccc gaaaaccggg
     6481 cgcgtccata cgtcctatca tcaggcggta acggcgacgg gacgtttatc gtccaccgat
     6541 ccgaacctgc aaaatattcc ggtgcgcaat gaagaaggcc gccgcattcg tcaggcattt
     6601 attgcgcctg aggattatct catcgtatct gcggactatt cacagattga gctgcgtatt
     6661 atggcgcatc tttcccgtga taaagggctg ctcacggcgt tcgccgaagg gaaagatatt
     6721 caccgcgcaa cggcggcgga agtctttggc ttgccgctgg atagcgtgac cggggaacag
     6781 cgccgaagtg cgaaagccat taactttggc ctgatttacg ggatgagcgc cttcggtctt
     6841 tctcgccagc ttaatattcc gcgtaaagag gcgcagaagt atatggatct ctacttcgaa
     6901 cgctaccctg gcgtgctgga atatatggag cgcacccgcg ctcaggcaaa agaacaaggc
     6961 tatgtggaaa ctctggaggg gcgccgcctt tacctgccgg atattaaatc cagcaacgcg
     7021 gcgcggcgcg cgggggcgga acgcgcggcg atcaatgctc ccatgcaagg aacggctgcc
     7081 gatatcatca agcgcgccat gattgccgtc gatgcctggc tacaggccga gcagccacgc
     7141 gtgcggatga ttatgcaggt acacgatgaa ttagtgttcg aggtgcataa agacgactta
     7201 gatgcggtag caaaacgtat ccatcagttg atggaaaact gcacgcgtat tgatgtgccg
     7261 ttgctggtgg aagtcggtag cggagaaaat tgggatcaag cgcactaagc atttaaggaa
     7321 taacgcgctt ttttcgtaat taagcaacat aagcacgggg gttttgtgat gggtattaga
     7381 attccctatg taaagaatga aaaaaaaatt acgaaaaggt ctttctgtgt tgctcaaaaa
     7441 agagtaaagt tattcacgta gggtacagag gtaagatgtt ctatctttca gaccttttac
     7501 ttcacgtaat cggatttggc tgaatatttt agccgcccca gtcagtttat gactggggcg
     7561 ttttttattg ggcgtaagaa aagtttcgct cgcaccgtag gccggataag acgcgcagcg
     7621 gcgccatccg gcatagcggg tgattattcc ccgtcctgaa tctcttcgac cggtgccagt
     7681 tcactaaacc agctatccag tttctgacgt aacttatcca ctccctgctt tttcagcgag
     7741 gaaaacgctt ctacctgcac atcgccatta aaagccagca cggcttcacg taccatattc
     7801 aactgcgcct tgcgcgcgcc gctggccagt ttgtccgctt tggtcagcag aaccagaacc
     7861 tggatattgc tctctacagc ccactggatc atctgttggt cgaggtcttt caacggatgg
     7921 cggatatcca ttaaaacgac taagccctgt aggctttgac gtttctccag atattccccc
     7981 agcgcgcgtt gccacttgcg tttcatctct tccgggactt ccgcgtagcc atagcccggc
     8041 aggtcgacca accgtttgcc atctacgact tcaaacaggt taatcaattg ggtacggccc
     8101 ggcgttttag aggtgcgcgc caggcttttt tggttggtca acgtgttcag ggcgctggat
     8161 ttgcctgcat tggaacggcc agcaaaagcc acttcaattc cgcaatcgga aggtaaatgg
     8221 cgaatatcag gcgcactcat cacaaaatgc gtctgttgat aattcaggtt agtcaaagcg
     8281 gtcgtctccg tcagtcaaag cattgtggcg attatacctg aacgccagca aaagacggat
     8341 ttttcggcgc gtcggtgctg taagcaaaag ccatacgctt tgtgagacat tgtccattgc
     8401 acttatgcga catgacagag tcgttgtcag gctaaaagcc agttaatata gttaaatcat
     8461 gaatttatag aaaggtaatt gtctgaaaaa aagggatttg ccgtgtcggt atcttgtgag
     8521 tttaccccaa aagagtaaag taatgcacat agcgaggacg ctaacaggat caacgactca
     8581 ggatgagggt caggagcgcc aggaggcgaa gacacaggat tgtcaggaag acaaacgtcc
     8641 ggagacgtta gtaaaaggaa atggaaacaa catggaatgt tccaggctaa gggaaaaaca
     8701 gggcgtgttg atagccaaca gggatggtgg aacccgttaa gggtcgtgag tcaagaaaaa
     8761 aggcggcaga ttactctgtc gccttttttc tttgcttgct ttctgctaga ttccgcctca
     8821 attctatact gaataaaacg gcttaaagat ctgacatcat gaaaaaacca acctctgcac
     8881 cgcgcagtaa agcctttggc aaacagcgtc gtaaaacgcg tgaagagtta aaccaggagg
     8941 cgcgcgaccg taaacgcctg aaaaaacatc gcggccatgc gccgggaagt cgcgcggcgg
     9001 gcggcaattc cgcttcgggc ggcggcaatc agaatcaaca aaaagatcca cgtattggca
     9061 gtaaaacacc tgttccattg ggcgtgactg aaaaagtgac ccaacagcat aaaccgaaaa
     9121 gtgagaaacc tatgctttca ccgcaggcgg agttggattt actggaaacg gatgagcgcc
     9181 tggatgcgct gttagaacgt ctggaagcgg gcgaaaccct gagtgcggaa gatcaagcct
     9241 gggtagatgc caaactggat cgtattgatg aactgatgca gaagcttggt ctgtcttacg
     9301 atgacgacga agaagacgac gaagaggacg agaagcagga agatatgatg cgcctgctaa
     9361 gaggcggcaa ctaacgggtt tacaccgtgg gcttgcccgt cctgcttata acccttccgg
     9421 ttatatgtta tctggtgtgg ttattcgtta aactacagcg attgtcgcgg cgacagaaat
     9481 ggctgcgcag ccggcttgcc gcccgtcatg gcgtgaagcc ggtacgccgt acccgccaga
     9541 gacgccatcg gaaggagtga gcatgtctga acagcaaata gactgggatc tggccctgat
     9601 ccagaaatat aactattccg ggccacgata tacctcgtac ccaaccgcgc tggagttttc
     9661 tgaagacttc gaggacgccg cattcttgca ggctgtggcg cgttatcctg aacgtccgct
     9721 ctcgctgtat gtgcatatcc cgttttgtca caagttgtgt tatttctgcg gctgcaacaa
     9781 gattgtcacc cgccaacagc ataaagctga ccagtatctt gacgcgcttg agcaggaaat
     9841 tcgccatcgc gcgccgctgt ttgcagaccg tcatgtcagc cagcttcact ggggcggcgg
     9901 tacgcctact tacctgaata aagcgcaaat cagccgctta atgacgctgt tgcgtgaaaa
     9961 tttccacttt aataccgacg cggaaatctc gatcgaagtc gatccccgtg aaattgagct
    10021 ggatgtgctc gatcatttac gtgcggaagg ttttaaccgc ctgagtatgg gcgtgcagga
    10081 ctttaataaa gaggtgcagc gcctggttaa ccgcgagcag gatgaagaat tcatctttgc
    10141 gttgcttaat cacgcccgcg atatcggctt tacctcgacc aatatcgact tgatctacgg
    10201 tctaccgaaa cagacgccgg aaagcttcgc tttcacgctg aagcgtgtga cggaactgaa
    10261 ccccgatcgt ttgagcgtct ttaactatgc gcatctgcca acgctttttg ccgcccagcg
    10321 taaaattaaa gatgccgatt tacccagcgc gcagcagaaa ctggatattt tgcaggagac
    10381 gatcgtatcg cttactcagg ccggttatca gtttatcggg atggaccatt ttgcccgtcc
    10441 ggatgacgaa ctggccgtcg cgcagcgcga aggcgtgctg caccgtaatt ttcagggcta
    10501 tacgacccag ggcgataccg atctgctggg gatgggcgtt tctgctatca gcatgattgg
    10561 cgatggctac atgcagaacc agaaagagct gaagcgttat taccagcaag tggatgagcg
    10621 gggcaatgcg ctatggcgtg gtattacgct gacccgtgat gattgcattc gtcgcgatgt
    10681 tatcaaggcg ctgatttgta acttccgcct ggattttaac gctgtcgaac agcagtgggg
    10741 tttgcatttc gctgaatatt ttgccgaaga tttgcagtta ctgtcgccgc tggcgaaaga
    10801 tgggctggtg gatattagcg agaagggaat tcaggtgacg gcgaaaggtc gtttgctgat
    10861 ccgcaatatc tgcatgtgct ttgacgcgta tctgcgccag aaagcgcgga tgcagcagtt
    10921 ctcgcgcgtc atttagccgg gttgcccggt ggcgctgcgc ttaccgggcc tacacgttgc
    10981 gacaacctgt aggccggata agcattagcg ccatccggca cattgtcagc tgaacagtcc
    11041 caccagcgcg gcacacaaca cggcggctag cgcagtttgt ggcgtgtggc tgtcgaccgc
    11101 tccactcgat accagattaa taatagattc taacataatg aatccccccg tttgccgggc
    11161 atgatcatac tgaactcatc ggaacagtaa agcgcaaaat agcagcgttt tgcgctcaat
    11221 tattaatctt tacactcgcg gataatgttt actccattcc cagctctttc aacttccgcg
    11281 ttagggtgtt tcgaccccaa ccgagcagct tggcggcttc ctgtttatga ccctgcgtat
    11341 ggcgtaacgc cgtggtcagt agcgttcttt ccagttctgg ctgcgcttca gaaagcaggt
    11401 tttgatgacc ggatcgcaag gcgcgatccg cccattgcgc cagtaatgta gcccagctat
    11461 ccggcggcag gtgggacggg ctatccggcg ccgaggcttc aaacagttcg cccggtaaat
    11521 cctgggtcaa tacctcctgt ccggcggcca tgacggtgag ccagcggcag gtattttcta
    11581 actgacgcac gttaccaggc catgccaggc gcgttaacgc cgtttcggtt tccggatgta
    11641 ataatttggc ttccacgcct aattcacggg cggcgacctg caaaaaatgg cgcgccaggc
    11701 gcggaatatc ctcacggcgc tcgcgcaacg gcgggagatg gatacgaatc acgttcaggc
    11761 ggtggaacag gtcttcacgg aatttccctt cctgaacgcg tcgttcgagg ttctggtggg
    11821 tggcggcaat aatgcgcaca tccactttta ccggcgcgta cccgcccaca cggtagaact
    11881 gtccgtcagc cagcacgcgt aacagacgag tctggacatc cagcggcata tcgccaattt
    11941 cgtccagaaa cagcgtaccg ccgtcagcct gctcgaaacg gccctgccgg atggtattcg
    12001 ccccggtaaa agcgcctttc tcatggccaa acaattcgga ttcaatcaaa tctttcggga
    12061 tggccgccat attgagcgcg ataaacggcg ctttggcgcg tgggctatgg cgatgtagcg
    12121 catgggcgac cagttcttta ccggttcctg attcgccgtt aatcagcacg ctaatcgaag
    12181 aacgcgacag ccgaccaata atgcgaaaca catcctgcat ggcgggcgct tcgcctatca
    12241 tgtctgttgt cgggccgtta acctcgatat tacgcggctg ctgctgctcc tgatagtggc
    12301 taatcgctcg ctcgaccaga gcgacggctt catcaatatc aaacggttta ggcagataat
    12361 caaacgcccc ctgctgataa gcgctcacgg cggcatctaa atcggaatgc gcggtcataa
    12421 tgatgaccgg aagcatcgga tgacgttgtt taatctgctt taatagcgcc agcccgtcca
    12481 ttcctggcat tcggatatcc gacagcaaga cgtccggcgt tttactggcc agcgcagcca
    12541 gtacttcatt accattctca aaggtgatac aggtcaaccc tgccccggcg agagcacgtt
    12601 caagcaccca acggatggaa ctatcatcat cgacgaccca gactattcct cgttgcataa
    12661 acacctctat ttccgaatcg gcaggtaaac cgaaaactcg gtatgccccg gccaactggt
    12721 aaattcaatt ttgccggcgt gttgatcgat aagattgcgg gcgatagata acccaagccc
    12781 ggtgccgcct tcgcgaccgc tgaccatcgg gtagaacagc gtatcctgta aatggggagg
    12841 aatgcccggc ccattgtctt caacgtctat acgcgccgcc aggcgatagc gttcgccatg
    12901 cagcgttaac tggaaggcgg tacgggtacg cagcgtaatt tcgccgcctt ccggccccag
    12961 cgcctgcaag gcattgcgga caatattcag cagtacttgc tcaatttgtt ccgggtcgtg
    13021 cggcagttct ggcagactgg ggtcgtaatc gcggataagc cggacattat ccggcagttc
    13081 catcgacacc agcgccacca cgcgctccgc gactttatgt atgctctcgg taatgtgcat
    13141 tcccgggtgc tgcggcccca gcaaacgatc gacaaggttg cgtagcctgt cggcctgttc
    13201 aatgatgact ttggtatatt ccgttagcgc cgggtcgggc agcgccttgc tgagtagctg
    13261 cgccgcgccg cgcaggccgc cgagcggatt tttgatttcg tgcgccagac cgcgcaccag
    13321 atcgcgggcg gcgatttgct gcgcgtgctg caactgctcc tgactcagac gacgctggtt
    13381 atccatcggc gccatttcga gcagtataaa atcgtcgggc agacgttggg cggtcaaaga
    13441 gagaatatgc gagcgactat caatcaccag cgtcacttcg ttatcggtaa agccttgtcc
    13501 tgccgctaaa ctttcgcgca tcaggtcaat gtttaacgaa aaatagctca acagttcagg
    13561 taacggcgtc ccgaacagtt tgcgtgagct ttgcgcgagc aactgctgcg cggcagggtt
    13621 ggcgtaatgg attgccagcg cgtcgtcgac caccagcacg ctgttgatta acgaattgag
    13681 gatctgccca gcatcgggct gtatgccgct tgccattcag cagtctcctg gaaaaggttg
    13741 caccatttta gtgcattata gctttttacc actaaaaagc gcgtgagatc agattgttgg
    13801 tggagaaaaa agcccatcct gggatgggct gaaagtttcc acggcaactc aaaaactcct
    13861 gacgcctttc acgctgctgc tgcgttggct gccttcgctt accccggtca catcgctatc
    13921 tatgctcccg gggatgtgct cagttgccgc cttgcagcaa cgcgaaattc gtcggatttt
    13981 taatatacga ttaaacgctg tagtacagct caaactctac cgggtgcggg gtcatacgca
    14041 cgcggtcatc ttcttcgcga cgcagcgcaa tatacgcatc gatcgcttca tccgtgaaca
    14101 cgccgcctgc tttcaggaac tcgcggtcca ggtccagcgc gttcagcgct tcttccagag
    14161 aacctgctac ctgtgggatc tctttcgctt cttccggcgg caggtcatac aggtttttgt
    14221 ccatggcttc gcccgggtga atcttattct taatcccgtc cagaccggcc atcagcaggg
    14281 cggcaaagca cagatacggg ttagccgccg ggtccgggaa gcgaacttcg atacggcgcg
    14341 ctttcggaga cgccaccacc ggaatacgga tggaggcgga acggttacgg gcggagtagg
    14401 ccagcatcac cggcgcttcg taacccggga ccagacgctt gtaggagttg gtggtcgggt
    14461 tcgccagggc gttgatggct ttggcgtgtt tgatgacgcc gccgatgtag tacagcgcct
    14521 gctcagacag accggcatat ttgtcgccag agaacaggtt ggtgccgttc ttcgccagcg
    14581 acatgtggca gtgcataccg gaaccgttat cgccgaacat cggttttggc ataaaggtcg
    14641 cggtcttacc gaagcggtga gccacgttat gcacgacata tttgtaaatc tgaatttcgt
    14701 cggctttttt ggtcatggtg ttaaagcggg tcgccacttc gttctgacct gcggtcgcta
    14761 cttcgtggtg gtgcgcttca acaaccaggc ccatctgctc catgaccaga cacatttcag
    14821 aacggatatc ctgcgcggag tcaactggcg gaaccgggaa ataaccgcct ttcacgcccg
    14881 ggcgatggcc tttgttgccg ccttcgtatt tggtagagga gttccaggcg ccttcaatat
    14941 cgtcaatcgc cacatgtgag ccggagatag atgcgccgaa gcggatgtcg tcgaacagga
    15001 agaattcagg ttccggccca aacaggacgg tatcggcgat accggtcgcg cgcaggtagt
    15061 cttccgcacg ttttgcgatg gaacgtgggt cacggtcata accttgcaga gtgccaggct
    15121 ccaggatgtc gcaacggata atcagggtag agtccgcgaa gaacgggtcg ataaccgcag
    15181 tggacgcatc gggcatcagc accatgtcgg attcgttaat gcctttccag ccgccgatag
    15241 aggagccgtc aaacattttg ccttcttcaa agaattcggc atttacctga tgagcaggaa
    15301 tcgtgacgtg ctgttctttg cctttggtat cggtgaagcg cagatcgaca aacttcactt
    15361 cgtgttcgtt cagcatcgtc aaaacgtgtt cagcggacat acttgtactc tcccggattg
    15421 gtcatggtcg gtcgtcgtgg taacgagatc ttcaattctg ctggccgtgt cgccgtaaaa
    15481 atataaagcg aaatctgtgc caactttcac attgccccca aaaggcgtta tcatgcgcac
    15541 catcgtgcaa aagggctgca ccacggtgac tatgttgcac caaaatagtg cttcaatgtg
    15601 aacattaagc accacattgg tgcaatagaa cgcaagccac ccttttaacg ctccgtgaaa
    15661 gcgatcacaa agagactctg caatacttgt ttgcggagga tgtttgtgat cctgttttgt
    15721 agtgcgatta atccgtgtac aataacgcgc tatttctaat gcctgaggca aagttgtgat
    15781 cgaaaatttg cgtaacatcg ccatcatcgc gcacgttgac catggtaaaa ctaccctggt
    15841 tgataagctg ctccagcaat ccggtacgtt cgacgcgcgt gccgaaactc aagagcgagt
    15901 gatggactcc aacgatttgg agaaagagcg tggtattact atcctcgcta aaaacaccgc
    15961 tattaaatgg aatgattatc gtatcaacat cgttgatact cccgggcacg ctgacttcgg
    16021 tggtgaagta gagcgcgtca tgtccatggt tgactctgtg ctgctggtgg ttgacgcatt
    16081 tgacggcccg atgccgcaaa cgcgcttcgt gaccaaaaaa gcctttgctc atggcctgaa
    16141 acccattgtg gttatcaaca aggttgaccg tcctggcgcg cgccctgact gggttgtcga
    16201 ccaggtattc gacctgtttg ttaacctcga cgcgaccgac gaacagctgg acttcccgat
    16261 catctacgct tcggcgctga acggtatcgc gggtctggac cacgaagata tggcggaaga
    16321 catgaccccg ctgtatcagg cgatcgttga tcatgttccg gcgccggacg ttgacctcga
    16381 tggtccgttg cagatgcaga tctcccagct ggactacaac aactacgttg gcgttatcgg
    16441 cattggccgt atcaaacgcg gcaaagtgaa gccgaaccag caggtcacta tcatcgatag
    16501 tgaagggaaa acccgtaacg cgaaagtagg taaggtgctg acgcatctgg gtctggagcg
    16561 tatcgacagc gatatcgccg aagcgggcga tatcattgcg atcaccggtc tgggcgagct
    16621 gaacatttcc gacaccatct gcgacccgca gaacgttgaa gcgctgccgg cgctgtccgt
    16681 tgatgagccg accgtgtcta tgttcttctg cgttaacacc tcgccgttct gcggtaaaga
    16741 aggtaagttt gtgacttctc gtcagattct tgaccgtctg aacaaagagc tggtgcataa
    16801 cgtggcgctg cgcgttgaag aaaccgaaga tgcggatgcg ttccgtgtat ccggtcgtgg
    16861 cgaactgcac ctgtccgtgc tgattgaaaa catgcgtcgt gaaggtttcg aactggcggt
    16921 ttcccgtccg aaagttatct tccgtgaaat cgacggtcgt aaacaagagc cgtacgaaaa
    16981 cgtgacgctg gacgtcgaag agcagcacca ggggtctgtc atgcaggcgc tgggcgagcg
    17041 taaaggcgat ctgaaaaaca tgaatccgga cggtaaaggc cgcgtacgtc tcgactacgt
    17101 gatcccaagc cgcgggctga ttggtttccg ttcagaattc atgaccatga cttccggtac
    17161 gggtctgctg tactccacct tcagccatta cgacgatatt cgtccgggtg aagtgggcca
    17221 gcgtcagaac ggcgtactga tctccaacgg tcagggtaaa gcggtggcgt ttgcgctgtt
    17281 cggtttgcag gatcgcggta agctgttcct gggtcacggc gcggaagttt acgaaggcca
    17341 gattattggt attcacagtc gctccaacga cctgacggta aactgcctga ccggtaagaa
    17401 actgaccaac atgcgtgcgt ccggtacgga tgaagcggtg attctggttc cgccaattaa
    17461 aatgagtctt gagcaagcgc tggagttcat tgatgacgac gaactggtag aagtcactcc
    17521 aacctctatc cgtatccgta aacgtcacct gacggaaaac gatcgccgcc gtgcgaaccg
    17581 tggtcagaaa gaagagtaat taacgttctt acggataaaa accctgccga aatgaaaact
    17641 cggcggggtt tttttattca cgttgagaaa gggataaggt tgtcaaaaaa tcagcaatcg
    17701 ttggcgtatt atgccgacca atgacgctat ccgcatacac ctttgcccga gcgctggcat
    17761 tccccatcgc gacacccaat ccggctaaac gtagcatttc cgcatcgtta tcattatcgc
    17821 caaacgccat cacttcgcgc attgcgatat gctgttgctg tgcatatctg gcgaggcttt
    17881 gtcctttgct acaccccttc tggagaatat ccagttgatg atgccaggac caggtacagc
    17941 ttagctgtaa ttcatgctgt ataaactcag caatattttg tagttgtttt atgtgccgat
    18001 gaacgacgct gatttgccaa atattctccc tactgcttag ctcatcagcc tgaaagatta
    18061 ttttatcatc agcacgaatt gtcggtttaa gcggatatac ccgcgccagt attttttccg
    18121 tttgtaagtg cgtcagcggc agcggatcaa ggatctgctg ttgagccggt tgataaatat
    18181 aacttccgtt acaacagatc atcggttcgg tgagcgccag cgtttgataa tacgcatagg
    18241 cttcacgatg agagcgaccg gtgacaagca ttattcggca gcccatgtcc tgcatctgac
    18301 ggatagcggt tagcgactct ggcagaattt gtttattacg gtttagcagc gttccatcaa
    18361 gatcaaaagc gattaaacga tatcgcatga gcgcccgatc ctaaaacagc gtgaggcatc
    18421 caggtgattc agcaatggaa tatcgagacg gtgctgataa gcgagaaaac agtggcattg
    18481 ttttgcctgg caggcaggag aattgagccg ttgctgatat aaattaccca ttttaatttt
    18541 gctgatatga caagcaaaaa gatcgccttc tgcgttcata aaaatacttt ttcttcctgc
    18601 ggtacagata tccagctgcg ctggccactg ctgcgtttca accacataca gcggatcgag
    18661 ttcgctgaag gcgatggttt cctcaacggt atgccgggta ttggcacact cgttggcgtt
    18721 aaaccaaaaa taattctggt caggcaaccg ctggcgtagc caacgaaact ggtcgatatc
    18781 tttcatactg gcgacagccc ccgcgcacca ggttattccg gcggcagaga gcgctaaaca
    18841 ctgctggaga aagcgttcag cggtaatttg tgagggatga aaagaacacc ataaccgaag
    18901 ctttgagata tctccgccgc cagcacgaaa tgactccagc aatgacatta acgaaaaaga
    18961 ggcgttagtt tgtatgccga ccgcctgaac atgaggatag cggctaatgt ctgccagcgc
    19021 cgccatgtaa taacgcaagc gtagcgcctc gccataaggc gtaatcatca cattcaacgg
    19081 cgtacctaaa agaggcaaat ggtcaaccat gcgccatagc gcggcttcgt cgcgtttttt
    19141 atcgttgcgg gcgtgtttat ggaacgggca atagccgcaa tgataattac acgacttaag
    19201 atagccgcga taaaacagcg tatgaatatc gcgcagggcg gggatgctca tctctgccga
    19261 ttctcccgta gcatcacctc aggcgaaacg aacacaggag caaggcaatc ggataatgcc
    19321 ataccggtct ccgttagccg gaggcgactg ccattctgat aacagtagcc ctgccgtata
    19381 aagcgttcca ggtcggggaa atcccttagc gcatcgctgg taaaatattg ctgataatcg
    19441 ctaagagaaa gtccttgcca gaaaaataga tttttaatga taaagcggcg tttcatttca
    19501 tcagggggga gcagataacc gtgattaatg acggttttgt ccgggctgtc gataaacgcc
    19561 tgaatgattt ttcgtgatgt ttgcaggttc gacggccacg gtgaacagta atgcagattg
    19621 ccaagataac ttctgccgcc cgcgccgagc gccagtgagt tttcaaatcc gcagctttcc
    19681 gccgcggcgg atggcgctgg attaaggacg aaacggcgca tggacgtttg ggtgtagccc
    19741 gcgttgcgta aaagatcgcg ggctaaaacg tagtagctat gcatattttc ctggcgaggc
    19801 atattataaa gcggataaag aaacagctct tccggttgat aaacgagcgc ctgatgtaac
    19861 gattccgtca ggcttgcgtg agtctggccg ggaatgccgt aaataatatc aatattgagt
    19921 gatggaaaat gacctgcctt tagccattcc aacgcctggt gcgcgctggc ggtattgtgg
    19981 cggcgatgca gcgtatgtaa ctcgctatca tgaaaacttt gtacgccaat actgacgcga
    20041 ttaacggaaa aggcgtttaa tagcgctact ttttctgccg tggtatccgt aggggaagtt
    20101 tcaattgttt tataaatatt ccagtcaaca ttgagcacat caaagacgga aaaaaataac
    20161 ttttctaatt gcgcaatgtt taatagcaga ggtgtgccgc cgcctacggt gaagcttgcc
    20221 cagtggacgg gcgccagcgc catttgtcgg ccctaggtaa taatcgcgtc gatatagcta
    20281 tcaatgaacg tattatctgc gccagtgcag gtaaataaat tacagaaccc gcagcgactt
    20341 tgacaaaacg gcatatgaac atacagatgt gtgtcgtgct cgtaaatgcg cggttttact
    20401 ttgctaaagc tgacgttctc cagctcccga t
//
LOCUS       DAJVSD010000057        20267 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.057, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000057 DAJVSD010000000
VERSION     DAJVSD010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 20267)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20267)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20267
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.057"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..1466
                     /locus_tag="OQP62_001721"
     CDS             <1..1466
                     /locus_tag="OQP62_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HCS1721300.1"
                     /translation="GDTVCQDYFSPLGSQFRLLDSSPASITEALEEARSLYLAFRSQL
                     LERHHLQLILDQFDKAVITLDDTGALLHYNKYASQLFKINASGEIYDASFLKQVLHQE
                     RHTLREGKTVSAKVVDTPQGAMVVNLYPVFAARQLSRVVLTMQTVSSLQGAEHHVRRQ
                     ELSRRGLSARYHFDDLLTENPEMLRRLAIIKNYAGTDATILINGESGTGKEVLAQSIH
                     NASQRVNGLFVAINCGAMATQILESELFGYVAGAFTGASPKGKIGLFELAHHGTIFLD
                     EISELDKPLQTRLLRVLQERQIMRLGSDQMIPVDIRVIAATNQTLTKLIADGTFREDL
                     YYRLNVLKVTTIPLRKRPEDIKAIGLSLLTSFSQHYKRPALTLTPALWQELQRFAWPG
                     NVRQLSNIIERLVLSIDHSPATLDEGRLLLDDLEEGSRREPSTCHDCQMLAGDYKTIR
                     LRILRKLLEAERDNKSLVAKRLNVDRTSLTRWIRESA"
     gene            1559..2032
                     /locus_tag="OQP62_001722"
     CDS             1559..2032
                     /locus_tag="OQP62_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon-containing protein"
                     /protein_id="HCS1721301.1"
                     /translation="MNKVAQYYRELVASLSERLRNGERDIDALVEQARQRVMQTGELT
                     RTEVDELTRAVRRDLEEFAMSYEESQEDSVFLRVIKESLWQELADITDKTQLEWREVF
                     QDLNHHGVYHSGEVVGLGNLVCEKCHYHLAVYTPDVLPLCPKCGHDQFQRRPFEP"
     gene            complement(2071..2364)
                     /locus_tag="OQP62_001723"
     CDS             complement(2071..2364)
                     /locus_tag="OQP62_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001785127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721302.1"
                     /translation="MLRPCIIHDPDSDAGIHMLSWHGSPLIRFYTEAWCPTCAEFVYA
                     GFSNDDEGAAQFLSSLAEWNQPGVGLNEAFTALTPLFSLFADGYYRLEAQLHS"
     gene            complement(2483..3418)
                     /gene="rihA"
                     /locus_tag="OQP62_001724"
     CDS             complement(2483..3418)
                     /gene="rihA"
                     /locus_tag="OQP62_001724"
                     /EC_number="3.2.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-specific ribonucleoside hydrolase
                     RihA"
                     /protein_id="HCS1721303.1"
                     /translation="MALPIIIDCDPGHDDAIALVLALASPELEVKAITSSAGNQTPEK
                     TLRNVLRMLTLLKRPDIPVAGGAVKPLMRELIIADNVHGESGLDGPALPEPSFAPQSG
                     TAVELMAKTLRESAQPVTIVSTGPQTNVALLLNSHPELHTKIARIVIMGGAMALGNWT
                     PAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHAADIERFRDIGNPISTIVAE
                     LLDFFFEYHKDEKWGFVGAPLHDPCTIAWLLKPEIFTTVERWVGVETQGKYTQGMTVV
                     DYYFLTGNKPNATVMVDVDRQGFVDLLAERLQYYA"
     gene            complement(3535..4260)
                     /gene="gltL"
                     /locus_tag="OQP62_001725"
     CDS             complement(3535..4260)
                     /gene="gltL"
                     /locus_tag="OQP62_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020245804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter ATP binding
                     protein GltL"
                     /protein_id="HCS1721304.1"
                     /translation="MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLI
                     KTVNGLEPVQKGEITVNGIIVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQ
                     VKVLKRDKAAARDKGLKLLERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLF
                     DEPTSALDPEMINEVLDVMVELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDS
                     PKEEFFANPSSDRAKDFLAKILH"
     gene            complement(4260..4934)
                     /gene="gltK"
                     /locus_tag="OQP62_001726"
     CDS             complement(4260..4934)
                     /gene="gltK"
                     /locus_tag="OQP62_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter permease
                     GltK"
                     /protein_id="HCS1721305.1"
                     /translation="MYEFDWSSIIPSLPYLLAGLVITLKITVTAVVVGIVWGTILAVM
                     RLSSFAPIAWFAKAYVNVFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKTDIRLISAMV
                     AFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLT
                     QGIVLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGAVYFVISLSASLLVSY
                     LKKRTV"
     gene            complement(4934..5674)
                     /gene="gltJ"
                     /locus_tag="OQP62_001727"
     CDS             complement(4934..5674)
                     /gene="gltJ"
                     /locus_tag="OQP62_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter permease
                     GltJ"
                     /protein_id="HCS1721306.1"
                     /translation="MSIDWNWGIFLQEAPFGNTTYLGWLWSGFQVTVALSITAWIIAF
                     LVGSIFGILRTVPNRFLSGLGTLYVELFRNVPLIVQFFTWYLVVPELLPEDLGMWFKA
                     ELDPNIQFFLSSMICLGLFTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVL
                     LPNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLA
                     YVLINAVIMLVMSLVERKVRLPGNVGSK"
     gene            complement(5834..6742)
                     /locus_tag="OQP62_001728"
     CDS             complement(5834..6742)
                     /locus_tag="OQP62_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1721307.1"
                     /translation="MQLRKLTTAMLVMGLSAGLAHAEDGAPAAGSTLDKIAKNGVIVV
                     GHRESSVPFSYYDNQQKVVGYSQDYSNAIVEVVKKKLNKPDLQVKLIPITSQNRIPLL
                     QNGTFDFECGSTTNNLERQKQAAFSDTIFVVGTRLLTKKGGDIKDFPDLKGKAVVVTS
                     GTTSEILLHKLNEEQKMGMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKK
                     PDNWEIVGKPQSQEAYGCMLRKNDPEFKKLMDDTIAQAQTSGEAEKWFDKWFKNPIPP
                     KNLNMNFELSDEMKALFKAPNDKALN"
     gene            complement(7160..8698)
                     /gene="lnt"
                     /locus_tag="OQP62_001729"
     CDS             complement(7160..8698)
                     /gene="lnt"
                     /locus_tag="OQP62_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HCS1721308.1"
                     /translation="MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIVSLIGL
                     QALTFNRRPLQSAAIGYCWGLGLFGSGINWVYVSIAQFGGMPGPVNVFLVVLLAAYLS
                     LYTGLFAGILSRLWPKTNWLRVAIAAPAIWQITEFLRGWVLTGFPWLQFGYSQVDGPL
                     KGLAPVMGVEAINFLLMMVSGLLALALATRNWRPLAVAVILFALPFPLRYIQWFTLEP
                     TKATQVSLVQGDIPQSLKWDENQLLNTLNIYLNETRPELGKSQIIIWPESAIPDLEIN
                     QQPFLRSLDEMLREKNSTLITGIVDARLNKQNRYDTYNTIITLGKDNPYSYDSPNRYN
                     KNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPQLHAHDYKLTAAICYEIIL
                     GEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRSLELARPLLRSTNNGITA
                     VIGPQGEIQAMIPQFTRQVLTTKVTPTTGLTPYARTGDWTVWLITVLFGFGALVMSLR
                     QRRK"
     gene            complement(8718..9596)
                     /gene="corC"
                     /locus_tag="OQP62_001730"
     CDS             complement(8718..9596)
                     /gene="corC"
                     /locus_tag="OQP62_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459659.1"
                     /note="CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter
                     (CNNM) family, and was characterized as belonging to a set
                     of three proteins, at least one of which must be present
                     for CorA to function; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family magnesium/cobalt transport protein
                     CorC"
                     /protein_id="HCS1721309.1"
                     /translation="MSDDNSHSSDTVNSKKGFFSLLLSQLFHGEPKNRDELLALIRDS
                     GQNELIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSR
                     FPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRTAVVVPESKRVDRMLKEFRS
                     QRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTIRALA
                     SIEDFNDAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQ
                     VHVRIPDDSPQPKLDE"
     gene            complement(9754..10227)
                     /gene="ybeY"
                     /locus_tag="OQP62_001731"
     CDS             complement(9754..10227)
                     /gene="ybeY"
                     /locus_tag="OQP62_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HCS1721310.1"
                     /translation="MSQVILDLQLACENHAGLPDEAQFQRWLDGVIPQFQEEAEVTIR
                     LVDEAESHDLNLTYRGKDKPTNVLSFPFEAPPGIEMPLLGDLIICRQVVEQEAQEQSK
                     PLEAHWAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAEKIAE"
     gene            complement(10224..11270)
                     /locus_tag="OQP62_001732"
     CDS             complement(10224..11270)
                     /locus_tag="OQP62_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005225825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HCS1721311.1"
                     /translation="MNIDTREITLEPADNARLLSLCGPFDDNIKQLERRLGIEINRRD
                     NHFKLTGRPICVTAATDILRSLYVDTAPMRGQTQDIEPEQIHLAIKEARVLEQSAESV
                     PDYGKAINIKTKRGVIKPRTPNQAQYIANILDHDITFGVGPAGTGKTYLAVAAAVDAL
                     ERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVEKLIER
                     NVIEVAPLAYMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGFNSKAVITGDVTQIDL
                     PRNTKSGLRHAIEVLAEVDEISFNFFHSEDVVRHPVVARIVNAYEAWEEAEQKRKAAL
                     AAERKREAQEQEQK"
     gene            complement(11475..12899)
                     /gene="miaB"
                     /locus_tag="OQP62_001733"
     CDS             complement(11475..12899)
                     /gene="miaB"
                     /locus_tag="OQP62_001733"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HCS1721312.1"
                     /translation="MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVL
                     LLNTCSIREKAQEKVFHQLGRWRLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDII
                     FGPQTLHRLPEMINSVRGDRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKY
                     CTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTF
                     ADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNL
                     MGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSY
                     SFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGT
                     SRKNIMELSGRTENNRVVNFEGTPEMIGKFVDVEITDVYPNSLRGKVVRTEDEMGLRV
                     AETPESVIARTRKENELGVGFYQP"
     gene            13043..14218
                     /gene="ubiF"
                     /locus_tag="OQP62_001734"
     CDS             13043..14218
                     /gene="ubiF"
                     /locus_tag="OQP62_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
                     hydroxylase"
                     /protein_id="HCS1721313.1"
                     /translation="MTNQPTEIAIVGGGMVGGALALGLAQQGFTVMVIEHAAPAPFVA
                     DSQPDVRISAISAASVALLKGLGVWEAVQGMRSHPYRRLETWEWENAHVVFDAAELKL
                     PLLGYMVENNVLQQALWQALEAHPGVTLRVPASLAALHRRHDGYALELADGEWVTPKL
                     VIGADGANSQVRQMAGIGIHAWQYAQSCMLITVKCENAPGDSTWQQFTPTGPRAFLPL
                     FDDWASLVWYDAPARIRQLQSLSMTQLQVEINQHFPARLGAVMPVAAGAFPLTRRHAL
                     QYAQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDVLASARSYGESWASHSVLKRY
                     QTRRMADNFMMQSGMDLFYAGFSNELPPLRILRNMGLMAAQRAGVLKRQALKYALGL"
     gene            complement(14351..14425)
                     /locus_tag="OQP62_001735"
     tRNA            complement(14351..14425)
                     /locus_tag="OQP62_001735"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14391..14393),aa:Gln,seq:ctg)
     gene            complement(14472..14548)
                     /locus_tag="OQP62_001736"
     tRNA            complement(14472..14548)
                     /locus_tag="OQP62_001736"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14512..14514),aa:Met,seq:cat)
     gene            complement(14564..14638)
                     /locus_tag="OQP62_001737"
     tRNA            complement(14564..14638)
                     /locus_tag="OQP62_001737"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14604..14606),aa:Gln,seq:ttg)
     gene            complement(14674..14748)
                     /locus_tag="OQP62_001738"
     tRNA            complement(14674..14748)
                     /locus_tag="OQP62_001738"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14714..14716),aa:Gln,seq:ttg)
     gene            complement(14772..14856)
                     /locus_tag="OQP62_001739"
     tRNA            complement(14772..14856)
                     /locus_tag="OQP62_001739"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14820..14822),aa:Leu,seq:tag)
     gene            complement(14865..14941)
                     /locus_tag="OQP62_001740"
     tRNA            complement(14865..14941)
                     /locus_tag="OQP62_001740"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14905..14907),aa:Met,seq:cat)
     gene            complement(15163..16827)
                     /gene="asnB"
                     /locus_tag="OQP62_001741"
     CDS             complement(15163..16827)
                     /gene="asnB"
                     /locus_tag="OQP62_001741"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001724523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase B"
                     /protein_id="HCS1721314.1"
                     /translation="MCSIFGVFDIKTDAAELRKKALELSRLMRHRGPDWSGIYACDNA
                     ILAHERLSIVDVNAGAQPLYNAKKTHVLAVNGEIYNHQTLRAEYGDRYAFQTGSDCEV
                     ILALYQEKGPDFLDDLQGMFAFALYDSEKDAYLIGRDHIGIIPLYMGYDEFGNFYVAS
                     EMKALTPVCRTIKEFPAGSYLWSKDGEIRQYYQRDWFDYDAVKDNVTDKNALRQALEE
                     SVKSHLMSDVPYGVLLSGGLDSSVISAITKKFAARRVEDQERSEAWWPQLHSFAVGLE
                     GSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMS
                     RKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLQALHMYDCTRANKA
                     MSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNGKMEKHVLRECFESYLPASVAWRQK
                     EQFSDGVGYSWIDTLKEVAAKQISDQQLETARFRFPYNTPSSKEAYLYREIFEELFPV
                     PSAAECVPGGPSVACSSAKAIEWDEAFKTMDDPSGRAVGVHQSAYQ"
     gene            complement(17117..17869)
                     /gene="nagD"
                     /locus_tag="OQP62_001742"
     CDS             complement(17117..17869)
                     /gene="nagD"
                     /locus_tag="OQP62_001742"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007373873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide monophosphatase NagD"
                     /protein_id="HCS1721315.1"
                     /translation="MTIKNVICDIDGVLMHDNVAVPGAAEFLTGILEKGLPLVLLTNY
                     PSQTGQDLANRFATAGVNVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKA
                     GFTITDVNPDFVIVGETRSYNWDMMHKAAFFVANGARFIATNPDTHGRGFYPACGALC
                     AGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETI
                     LVLSGVSTINDIDSMPFRPSWIYPSVAEIDVI"
     gene            complement(17916..19136)
                     /gene="nagC"
                     /locus_tag="OQP62_001743"
                     /gene_synonym="nagR"
     CDS             complement(17916..19136)
                     /gene="nagC"
                     /locus_tag="OQP62_001743"
                     /gene_synonym="nagR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NagC"
                     /protein_id="HCS1721316.1"
                     /translation="MTPGGQAQIGNVDLVKQLNSAAVYRLIDQHGPISRIQIAEQSQL
                     APASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDTTLTL
                     YDLSSKVVAEEHYPLPERTQETLEHALLNTIAVFIDSCQRKIRELIAISVILPGLVDP
                     ESGVIRYMPHIQVENWGLVEALEKRFHVTCFVGHDIRSLALAEHYFGASQDCEDSILV
                     RVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQ
                     RVLNLLKQGYQSRVPLDDCTIKTICKAANRGDSLASEVIEHVGRHLGKTIAIAINLFN
                     PQKIVIAGEIIEADKVLLPAIESCINTQALKAFRKNLPVVRSTLDHRSAIGAFALVKR
                     AMLNGTLLQRLLES"
     gene            complement(19141..>20267)
                     /gene="nagA"
                     /locus_tag="OQP62_001744"
     CDS             complement(19141..>20267)
                     /gene="nagA"
                     /locus_tag="OQP62_001744"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HCS1721317.1"
                     /translation="TGHEILDDHALVVANGLIDRVCPMAELPPGIEQRSLNGAILSPG
                     FIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNFLPTLITTSDELMKQGIR
                     VMREYLEKHPHQALGLHLEGPWLNLVKKGTHNPDFVRKPDAALVDFLCDNADVITKVT
                     LAPEMVPADVIAKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLFNAMPYITGRE
                     PGLAGAVLDEADIYCGVIADGLHVDYANIRNAKRLKGDKLCLVTDATAPAGANIEQFI
                     FAGKTIYYRNGLCVDENGTLSGSSLTMIEGVRNLVAHCGIALDEVLRMATLYPARAIG
                     VDKHLGSIAPSKVANLTAFTHDFKIIKTIVNGDEVVDLSK"
BASE COUNT         4655 a         5329 c         5517 g         4766 t
ORIGIN      
        1 ttggcgatac cgtttgtcag gattattttt caccgctggg ctcgcaattc cgtttacttg
       61 attccagccc cgcctcaata accgaagctc tggaagaagc ccgctcatta tatctggctt
      121 ttcgcagcca attactggag cgccatcatc tgcagctgat tctcgatcag tttgataaag
      181 ctgttatcac gcttgatgat accggcgcgt tactgcatta caataaatat gcgagccaac
      241 tttttaaaat taacgcctcc ggtgaaattt atgacgcatc tttcctgaaa caggtattgc
      301 accaggagcg gcatacatta cgtgagggaa aaaccgtcag cgcgaaagtc gtcgatacac
      361 cgcaaggcgc gatggtagtt aatctgtatc cggtatttgc ggccagacag ttaagccggg
      421 tggtgttgac gatgcaaacc gtctccagtt tacagggggc ggaacatcat gttcgccgcc
      481 aggaactgtc tcgccgcggc ttgagcgccc gctatcattt cgacgatctg cttaccgaaa
      541 acccggaaat gctgcgtcgt ctggcgatca ttaaaaatta tgccggtacg gacgcgacta
      601 tcttaattaa tggcgaaagc gggacgggaa aagaggtgct ggcgcaaagt attcataatg
      661 ccagccaacg cgtcaacggc ctgtttgtcg ccattaactg cggcgcgatg gccactcaga
      721 ttctggagag cgaactcttt ggctatgtcg ccggcgcatt taccggcgcg tcgccgaaag
      781 gcaaaatagg cctgtttgaa ttagcgcacc acggtaccat ttttctggat gagattagcg
      841 aactggataa accgctacag acgcgcttat tacgggtatt gcaggagcgg cagattatgc
      901 ggctgggctc agaccagatg atacctgttg atattcgcgt gattgcggcg accaatcaga
      961 cgttaacgaa gctcattgcg gatgggacat ttcgcgaaga tctttattat cggcttaacg
     1021 tattaaaagt aaccactatc ccgctacgca aacgtccgga ggatatcaaa gccatcggcc
     1081 tgtcgctgct tactagtttc agccagcatt ataaacgccc ggcactaacg ttaaccccgg
     1141 cgctgtggca ggagcttcag cgcttcgcct ggcccggaaa cgtcaggcag ttaagcaata
     1201 ttatcgaacg gctggtgctc tctattgatc actccccggc aactctggat gagggccgcc
     1261 tcttgctgga cgatttggaa gaggggagcc gacgcgagcc aagtacctgc cacgactgcc
     1321 agatgctggc tggcgattat aaaacgattc gcctgcgtat tttgagaaaa ttattagagg
     1381 cggaaaggga taataaatcg ttagtggcga aacggttaaa tgtcgatcgt acctcgctga
     1441 cgcgctggat acgcgagtcg gcctgacaag aatttacaga ctctgtgggc agccttgcaa
     1501 agcgtaacgc aaataacgtc tattattata ggcagttaac gatccaagag gtgaagtgat
     1561 gaacaaggtt gctcaatatt atcgtgaact ggtggcctca ttaagcgagc gtttacgcaa
     1621 tggcgagcgc gacattgatg cgctggtgga gcaggcgcgc cagcgcgtga tgcaaacagg
     1681 ggagttaacg cgaaccgagg tggacgaact gacgcgcgct gtcagacgcg atctggaaga
     1741 gttcgccatg agctacgaag agagccagga agatagcgtc ttcttgcggg tgattaaaga
     1801 gagtctctgg caggaactgg cggatattac cgacaaaacc cagctggaat ggcgtgaagt
     1861 cttccaggat ttgaatcacc acggcgtgta tcacagtggc gaagtggtgg ggttggggaa
     1921 tctggtgtgc gagaaatgcc actatcatct ggcggtttac acgccggatg tgctgccgct
     1981 ctgcccgaag tgtgggcacg atcagttcca gcgcaggccg tttgagccgt aaggttcatt
     2041 atcgtgagcg gacggttgcc gtccgccatg ttaagagtgt agttgggctt ccagccggta
     2101 atagccatcg gcaaagagtg aaaacagcgg cgtcagggcg gtaaatgctt cgttcaaccc
     2161 gactcctggc tgattccact cggcaagtga ggataaaaac tgcgcggcgc cttcatcatc
     2221 attgctaaaa ccggcataaa caaattctgc gcaggttggg caccaggctt cagtgtaaaa
     2281 acgaatcagc ggcgagccat gccaggagag catatgaata ccggcgtcag agtcgggatc
     2341 gtggataatg cagggacgaa gcaatgcttt tccgttacgt actgaaaacg ttatatgggc
     2401 tacgtcgtgc tgtagcaggc tgatttcagg tctattgtta cgccaaaaca tcgctgttca
     2461 tccctggatt cttctttgcg ctttatgcgt agtattgcag ccgttccgcc agcaaatcga
     2521 caaatccctg acggtctaca tcgaccatca ccgtcgcatt cggcttattc cccgtcagga
     2581 aataataatc caccaccgtc atcccctggg tatatttccc ctgagtttcc acgccaaccc
     2641 aacgctcaac ggtggtgaaa atctcaggtt tcagcagcca ggcgatagtg caagggtcgt
     2701 gcagcggcgc gccgacaaat ccccattttt cgtctttgtg gtattcaaag aagaagtcga
     2761 gtagttcagc cacgatcgtc gaaattggat tgccgatgtc gcggaaacgc tcgatatcgg
     2821 cggcgtgaat ctgcgcctta tgggtgacgt ccagcccggc catcaccacc ggaatgcctg
     2881 actggaagac aatttctgcc gcttccggat cgacgtaaat attaaattcc gcagcgggcg
     2941 tccagttacc cagcgccatc gcgccgccca tgatcacaat gcgggcgatt ttcgtatgca
     3001 gttccggatg gctattcagc agcagcgcca cgttggtctg tgggccagtg gagacgatgg
     3061 tgaccggctg tgcgctctcg cgcagtgttt ttgccatcag ctcaacggca gtgccgcttt
     3121 gcggggcgaa tgacggctcg ggcagcgccg ggccgtcaag accgctttcg ccgtgaacgt
     3181 tatcagcgat aatcagttcg cgcatgagcg gtttcaccgc gccgcccgcc acaggaatat
     3241 ccgggcgttt gagcagtgtc agcatccgca gcacgttgcg cagcgtcttc tccggcgtct
     3301 ggttgccggc ggaagaggtg atcgctttca cttccagttc aggggaggcg agggcgagaa
     3361 cgagggcgat cgcgtcatca tgacccggat cgcaatcaat aataatgggc agtgccattg
     3421 tggctccttg taagcggtac tttgtgacaa ggttaacgcc cggctggata cgtttcgaga
     3481 agcgaagaag taaagcgtga ggtagcgcgc actctgacgt gcgcgccggg aagattagtg
     3541 caggattttc gcaaggaagt cctttgcgcg atcggaactg gggttagcga agaactcctc
     3601 ttttggcgaa tcttcgacga ttttaccttc atccataaag atcacccggt tagccacttt
     3661 acgggcaaag cccatttcgt gcgtcaccac catcatggtc atcccttcgt tcgccagctc
     3721 gaccatcacg tccagtacct cgttgatcat ttccggatcg agcgcggaag tcggttcatc
     3781 gaataacatg gcaatggggt ccatacatag cgcgcgggcg atcgccacgc gctgctgctg
     3841 accgccggaa agctgcgccg ggaacttgtt ggcatgcgca gacaggccaa cgcgctccag
     3901 cagcttcagg cctttatcgc gggcggcggc cttatcgcgt ttcagcactt tcacctgcgc
     3961 cagcgtcagg ttttcgatga tcgacaggtg gggaaacagc tcgaagtgct ggaataccat
     4021 gcccacgcgg gaacgcagtt tcgccagatc ggtttttttg tcgttcacaa taatgccgtt
     4081 aacggtaatt tcgccttttt gcaccggttc cagaccgttg acggtcttaa ttagcgtgga
     4141 tttaccggaa cccgatggcc cgcagactac caccacctca ccttttttca cttctgtcga
     4201 acaatcggtc agcacctgaa agtgaccata ccattttgaa acatttttca gggtaatcat
     4261 taaactgtcc ttttcttcaa atagctgacc agcaacgacg cgctcaggct gataacaaaa
     4321 taaacggcgc cggcgaacag aatcatttcg acctgagtac cgtcacgctc gccgatagtc
     4381 gacgcggtgc ggaagaagtc cgccaggctg agtacataaa ctaaagaggt gtcctgaaat
     4441 agcacgatgc cctgcgtaag caacagcggc accattgccc gaaacgcctg cggcagaata
     4501 atgagcttca tcgactgcca gtgggtcatc cccagcgcca gcgcggcgct ggactgcccg
     4561 cgggaaatgc tttgaatacc ggcgcgaata atctcggaat agtaggccgc ttcaaacatg
     4621 gagaatgcca ccatcgcgga gatcaggcgg atatcggttt tcggcgatag tcccagcacg
     4681 ttttgcagaa agccgggtac aatcagatag aaccacagca agaccatgac caacgggatg
     4741 gaacggaaaa cgttaacata cgctttagca aaccaggcga taggagcaaa gcttgagagg
     4801 cgcatgacgg ccagaatggt tccccagact atccccacga caacggcggt gacggtgatc
     4861 ttcagcgtga tgaccaaccc ggccagcagg taaggcagtg aggggataat cgaactccag
     4921 tcaaattcgt acattatttg ctccccacgt tgcccggcag gcggactttg cgttcaacca
     4981 ggctcatgac cagcatgata acggcgttaa tcagcacata ggccagcgta atggcggtga
     5041 aggattccca ggcgtgcgcc gagtaatcca acagtttgcc tgcctgcgcc gccatatcca
     5101 ccaggccgat ggttgatgca atagccgagt ttttcaccag gttcatcatc tctgacgtca
     5161 ttggcggcac gataacgcga taggcattcg gcagcaggac atagcgataa gcctgcggca
     5221 gcgttagccc catcgccagc gccgcgttct tctgtccgcg aggcagagac tgaatcgcgg
     5281 cgcgcacctg ttcgcaaaca cgggcggcgg taaacagtcc cagacagatc attgaggaga
     5341 ggaaaaactg aatattggga tcgagttccg ccttaaacca catgccaaga tcttccggca
     5401 acagttcagg caccaccagg taccaggtga agaattgcac gatcagcggc acgttgcgga
     5461 acagttctac gtacaatgtg cccagtccgg agaggaaacg gttgggaacg gtacgtaaaa
     5521 tgccgaaaat agatcctacc aggaaagcga taatccaggc ggtaatcgaa agggctacgg
     5581 tgacctgaaa accactccat agccagccga gataggtggt attgccgaag ggggcttcct
     5641 gtaaaaaaat accccagttc cagtctattg acatacatct actccgaaaa aaaagggtag
     5701 cagcgctacc ctcgaagatt gttgcccggc gatctgcggt ttcaggcccg atggggaacg
     5761 accatcaggc ttatagtctg tccgtgctga gcgacaatcg agaggacagg agtcccgtcc
     5821 catttagttt tagttagtta agcgctttat cattcggtgc tttgaacagg gctttcatct
     5881 cgtcagacaa ctcgaaattc atgttcaggt ttttcggtgg gatcggattt ttaaaccact
     5941 tatcaaacca cttttccgct tcgccggagg tttgcgcctg agcgatggta tcgtccatca
     6001 gctttttaaa ctcagggtcg tttttacgca gcatacagcc gtaggcttcc tgggactgcg
     6061 gtttaccgac aatctcccag ttatccggtt tcttggcttt ggcgcgctcg ccggccagca
     6121 gcgcgtcatc catcataaag gcgacggcgc gaccgctttc cagggtgcgg aacgagtcac
     6181 cgtggtcttt cgcgctaata atacgcatcc ccatcttttg ctcttcgtta agcttatgca
     6241 gcagaatttc agaggtcgtc ccggaggtga cgacgaccgc tttgcctttc agatccggga
     6301 aatctttaat atcgccgcct tttttagtca gcagtcgcgt cccgacgacg aaaatcgtat
     6361 cggagaaggc ggcctgtttc tggcgctcaa ggttgttagt cgttgaacca cattcaaaat
     6421 cgaaggttcc gttttgcaac agcggaatac ggttttgcga ggtgatcggg atcagcttca
     6481 cctgcagatc gggcttgtta agtttctttt ttaccacttc cacaatggcg ttggagtagt
     6541 cctgggaata gccgaccact ttctgctggt tgtcgtaata agaaaagggc acagaagatt
     6601 cgcgatgccc gacgacgatc acgccatttt tagcgatctt gtccagggtg ctaccagcgg
     6661 caggcgcgcc atcttctgcg tgcgcaaggc ccgcagacag tcccatgacc agcattgctg
     6721 tggttagctt acgtaattgc atatccaact cctttatcat ctgcgccgtc gacgcattga
     6781 tagctattgt gatgttgtta ttgcctgcaa cttgcgcgtg cagtgttatg tgtgtttgtt
     6841 aacatttagt gtggcttgtt gtaaatattt tgctgcgata ttgtttattt ttgcgaagtg
     6901 cgccgcaccg ttcagaggca aaaatcgcag tttgcacaat aatggtgcta ccgatgctgt
     6961 gttgtggtgc aacctggttg cgccggtagg gagtgtgcag cctcttgatt atattaagca
     7021 attggcgtgc cagaatgaga ttttggtggc ggtgagaggt tgtaggcctg ataagcgtag
     7081 cgccatcagg cacggtgcga tacaactgcc ggatggcggc gtaacgcctt atccggccta
     7141 cattggatag tgcaatgttt tatttgcggc gttgacgcag gctcatcacc agcgcgccaa
     7201 agccgaacag tacggtaatc aaccacaccg tccagtcgcc ggttcgtgcg tacggcgtca
     7261 ggccggtggt cggcgtgact ttggtagtta gcacctggcg tgtgaactgc gggatcatcg
     7321 cctgaatttc gccctgcggg ccaatcaccg ccgtaatacc gttattagta ctgcgcagca
     7381 acggacgcgc cagctccagc gaacgcatcc gcgccatctg gaaatgttgc cacgggccaa
     7441 tggacttacc aaaccaggcg tcgttagaaa tcgtcagcag atagtcggtg tccgggcgga
     7501 agttatcccg cacctgttcg ccaagaataa tttcataaca gattgccgcc gtcagcttat
     7561 agtcgtgcgc atgtaactgc ggctggatat aagggccgcg gctaaaggag gacatgggca
     7621 gatcgaagaa cggcgccagc ggacgcagga tagactccag cggaacgaac tcgccaaagg
     7681 gtacaaggtg atttttattg tagcgattgg gcgagtcata actgtatgga ttatccttgc
     7741 ccaacgtaat aatcgtattg taggtgtcgt atcgattctg tttattgaga cgcgcatcga
     7801 caataccggt gatcagcgtg ctattttttt cgcgtaacat ctcgtccagc gaacgaagga
     7861 aaggctgctg attgatttcg agatccggaa tcgccgactc aggccagata ataatctgtg
     7921 atttgcctaa ctctgggcga gtttcgttga gataaatgtt tagcgtattc agtagctggt
     7981 tttcgtccca cttcagcgac tgcggaatat cgccctgcac cagcgatacc tgggtcgctt
     8041 tggtaggttc cagcgtaaac cactggatat aacgtagcgg aaagggcaaa gcaaacagaa
     8101 tcacggcgac agccagcgga cgccagttcc gcgtcgccag tgccagcgct aacaggccgc
     8161 tgaccatcat cagcaggaag ttgatcgctt cgacgcccat taccggcgcc aggcctttta
     8221 gcgggccgtc gacctgacta tagccaaatt gcagccaggg gaagccggtc agcacccagc
     8281 cgcgtaaaaa ttcggtgatt tgccatattg caggcgcggc gatagcgacg cgcagccagt
     8341 tggtttttgg ccacaggcgc gacaaaatcc cggcaaacag tccggtatac agcgagagat
     8401 aagctgcaag cagcaccacc agaaaaacgt taaccgggcc cggcatgccg ccaaactgcg
     8461 cgatactgac ataaacccag ttaatcccgc tgccgaaaag tccgagtccc cagcaatagc
     8521 cgatggcggc agactggagc gggcggcgat taaacgttaa ggcctgcagc ccgataagcg
     8581 acactatcgc tgcgggccag acgtcatacg gagagaaagc cagtgttccg caggcgccga
     8641 ataataacgc cagcagcagg cgaatacgct ggcgttcaat taacgaggca aatgccattt
     8701 ttagtccact attgctgtta ttcgtccagt tttggctggg gcgagtcatc cgggatcctg
     8761 acatgcacct gaataatacg acgactatcg gccattgcca ctttgaactg gtaaccatca
     8821 atgtcaatgg tttcgccgcg ggccggtaaa tggccgaacg cctgcatcac cagcccgccg
     8881 atggtatcga cttcttcatc gctgaagtgg gtgccgaaag cgtcattgaa gtcttcaatc
     8941 gacgccagcg cgcgaatcgt ccaggtatgg cggctaagct gacggaagtc gatatcgtct
     9001 tcttcgtcat actcatcttc aatttcaccg acaatcagtt cgaggatgtc ttcgatagtc
     9061 acaaggccgg aaacgccgcc aaactcatcg ataacgatgg ccatatggta gcgctgggag
     9121 cggaattcct tgagcatacg gtcaacccgt ttgctttccg gtacgacaac cgcggtacgt
     9181 aacactttgt ccatgctgaa ggcttcggca tcgctgcgca taaacggcag caaatctttg
     9241 gccatcagaa tcccttcaat gtgatcttta tcttcgctga tcaccggaaa acgcgagtgg
     9301 gcggactcga tgataacatc gagacattcg tccagcgtct ggttgcgttt cagggtaatc
     9361 atctgggagc gcgggatcat aatatcgcga acgcgctggt cggcgatgtc cattacgcct
     9421 tcgagcatat cgcgcgtatc ttcatcgata agctcgttct gcccggaatc acggatcagc
     9481 gccagcaact catcacggtt tttaggttca ccgtggaaaa gctggctgag tagcagggaa
     9541 aaaaatccct ttttactgtt tactgtgtca ctactgtgtg aattgtcgtc gctcatggcg
     9601 tcgtatgggt tctcatgtta gttaatacaa agctcgtcat gcgtatactc agctgtgacg
     9661 gcatgttttg cctgatgacg ctacgcttat caggcctaca aaaggcatga atgtaggccg
     9721 gataaggcgc aagcgccgcc atccggcaag ctactattct gcaatcttct cggcaatgta
     9781 cggatcctca tagcccatag caagcataat ctccgtttcg agagactcca tctcttccgc
     9841 ttcgtcatcg tcgatatgat cgtaacccag caaatgcagg ctaccgtgta cgaccatgtg
     9901 cgcccagtgc gcctccagtg gcttgctctg ttcctgcgct tcctgctcca cgacctgacg
     9961 gcaaataatc agatcgccca gtagcggcat ttcaatgccg gggggcgctt caaacgggaa
    10021 ggagagaaca ttagtgggtt tatctttccc gcggtacgtc aaattaaggt catggctttc
    10081 ggcctcatcc accagacgga ttgtgacttc cgcctcttcc tgaaactgcg gaataacgcc
    10141 gtccagccag cgttgaaact gagcttcatc cggcaggccc gcgtggtttt cacaggccaa
    10201 ctgtaaatcg aggatcacct ggctcatttc tgttcctgct cctgggcttc acgcttacgc
    10261 tccgccgcca acgccgcttt gcgtttttgt tcggcctctt cccaggcttc ataggcgttc
    10321 acaatgcggg caacgaccgg atggcgcacc acgtcttcgc tgtggaagaa gttaaagctg
    10381 atttcatcga cttccgccag cacttcaatg gcatgacgca agccggattt ggtgttgcgt
    10441 ggcaggtcaa tctgcgtcac gtcgccggtg atcaccgctt tcgagttaaa gccgatacgc
    10501 gtcaggaaca tcttcatctg ttcgatagtg gtgttctggc tttcatccag aatgataaag
    10561 gcgtcgttta atgtgcgtcc gcgcatatag gccagcggcg cgacttcaat cacattgcgc
    10621 tcaatcagct tctcgacttt ttcaaagccg agcatttcga acagcgcgtc atacagcgga
    10681 cgcaggtacg ggtccacctt ctgacttaaa tcgcctggca gaaagccgag tttttcgccc
    10741 gcttccaccg ccggacgggt cagtagaata cggcgaatct cctggcgctc cagggcgtct
    10801 accgcagcgg cgaccgcaag ataagtttta ccggtacccg ccgggccgac gccaaaggta
    10861 atatcatgat cgagaatatt ggcgatgtac tgcgcctggt tcggggtacg cggtttaatc
    10921 acgccgcgct tggttttgat attaatagct ttgccatagt caggcacgct ttccgcgctc
    10981 tgttccagca cccgcgcttc tttgatcgcc agatgaattt gttccggttc gatatcctga
    11041 gtctggccgc gcatcggtgc ggtatcgaca tacagacttc gcaaaatatc tgtcgccgcg
    11101 gtcacgcaaa tcggacgacc ggtcagttta aagtgattgt cacggcggtt gatttcaata
    11161 ccgagacgac gttcgagctg tttaatattg tcatcaaacg gcccgcaaag gctcaacaga
    11221 cgggcgttgt ctgcgggctc aagggtaatt tcgcgagtgt ctatattcaa actgttcctc
    11281 ttgtgtctgt atcgccggac gctgaacatt taccggcatc taaggaaatt attcacgcca
    11341 tagggaaaag gcgcaagcat tgcaatgaag atggggatga agagagaaaa ttgcaaggcc
    11401 cgtcgggcga caggccatga ccaggaagcc cgacaggcgt agcgccatcg ggcattattg
    11461 cctttcctgc aggattaagg ctggtagaat cctacgccca gctcattttc tttacgggta
    11521 cgggcaatga cggactccgg cgtttcggcg acgcgcagac ccatttcatc ttcggtacgc
    11581 accacttttc cgcgcaggga gttcggatag acgtcagtaa tttccacatc gacaaactta
    11641 ccaatcatct ccggcgtgcc ttcaaagttc accacccgat tgttttcggt acggccagac
    11701 agttccataa tgtttttacg cgacgtgcct tccaccagaa tgcgctgtgt cgtgccgagc
    11761 atacggcggc tccatgccat cgcctgctga ttgatacgct cttgcagaat atacagacgc
    11821 tgctttttct cttcttccgg tacgtcatca accatatcgg cagccggcgt tcccggacgc
    11881 gcagagaaga taaagctgta gctcatatca aagttgacgt cggcgataag cttcatggtt
    11941 ttttcgaaat catcggtagt ttcgcctggg aaaccgacga taaagtcaga gcttatctga
    12001 atgtccggcc gcgccgcgcg cagtttacgg atgattgctt tatattccag cgcagtgtgg
    12061 gtgcgcccca tcagattcaa cacgcgatcg gaaccgctct gtaccggcag atgcaggaaa
    12121 ctgaccagct ccggcgtatc gcggtacacc tcgataatat cgtcggtgaa ctcaatcgga
    12181 tggctggtgg taaagcgaat acggtcaatg ccgtcgatgg cggcaaccag acgcagcaga
    12241 tcggcaaagg tgccggtggt gccgtcgtag ttttctccgc gccaggcgtt aacgttctgg
    12301 cccagcaggt tgacctcacg cacgccctgc gccgctaact gggcgatttc gaacaggata
    12361 tcgtctgagg gacggctgac ttcttcaccg cgggtatacg gtaccacgca gtaagtacaa
    12421 tatttattgc agccttccat gatagaaacg aaagcggtcg ggccttcggc gcgcggctcc
    12481 ggcaaacgat cgaacttctc gatttccggg aagctgatat cgaccaccgg gctgcggtcg
    12541 ccacgcacgg agttaatcat ctccggcagg cggtgtaagg tttgcgggcc aaaaataatg
    12601 tcgacgtaat gggcgcgttg acgaatgtgc tcgccttcct gggaagccac acagccgccg
    12661 acgccgataa tcagatcggg atttttctct tttaacagtc tccagcgacc taattgatgg
    12721 aagacttttt cctgagcctt ctcgcggatt gagcaggtat tcaacagcag cacatccgcc
    12781 tcttccgcca cgtcggtcag ttgatagccg tgggtggcgt ccagcagatc ggccatcttc
    12841 gatgaatcgt actcgttcat ctgacagccc caggttttaa tatggagttt tttagtcatc
    12901 gacttgctct tgcgaaatag tggctgaaaa gcagggcgca tagtgtaatg ctttggcgcg
    12961 gttgtgacca gtatgactga cgtcagccct aatgggtaaa aaatcctgta aacttgtcta
    13021 aaacgtaaca ggatgaatga ccatgacaaa tcaaccaacg gaaattgcca ttgtcggcgg
    13081 gggaatggtc ggcggcgcgc tggcgctggg tctggcgcag caagggttta cggtgatggt
    13141 aatagaacat gccgcgcctg cgccgtttgt ggctgacagc cagcctgacg tgcggatttc
    13201 ggccattagc gcggcatccg tggcgctgct caaggggctg ggcgtttggg aggcggtgca
    13261 ggggatgcgt agccatcctt atcggcgact ggagacctgg gagtgggaaa acgcccatgt
    13321 ggtgttcgac gccgctgaac tcaagctgcc gctgttaggc tatatggtag agaacaacgt
    13381 cctgcaacag gcgctgtggc aggcgctgga agcgcacccc ggcgtgacgc tgcgcgttcc
    13441 ggcttcactg gcggcattgc accgccgcca cgatggttat gcgctggaac tggccgacgg
    13501 cgaatgggta acgccgaagt tagtgattgg cgccgacggc gcgaattcgc aggttcggca
    13561 aatggcggga attggcattc atgcctggca atatgcgcag tcgtgtatgc ttatcaccgt
    13621 caagtgtgaa aatgcgccag gcgacagcac ctggcagcag tttacgccaa cggggccgcg
    13681 cgcctttttg ccgctgttcg acgattgggc gtcgctggtg tggtatgacg ctccggcacg
    13741 tattcgccag ctacagagtt tatcgatgac gcaattgcag gtggaaatta accagcactt
    13801 tccggcgcgt ctgggggcgg tgatgcctgt cgcggcgggc gcgtttccgc taacccgtcg
    13861 tcacgcgttg cagtatgcgc aaccggggct ggcgctggta ggcgacgcgg cgcataccat
    13921 tcatccgctg gccgggcagg gcgtcaacct ggggtatcgg gatgttgatg cgttgattga
    13981 tgtgctggcg agtgcccgta gctatggcga gtcctgggcc agccattcgg tgttgaaacg
    14041 ctatcagacg cggcgcatgg cagataattt tatgatgcaa agtggaatgg atctgtttta
    14101 tgccgggttc agcaatgaac tgccgccact gcgtatttta cgcaatatgg ggctaatggc
    14161 ggcgcagcgc gcaggcgtgc taaaacgtca ggcgctgaag tatgcgttgg ggttgtagtt
    14221 tgtgttatgc cgggtggcgg ctatacctta cccggcctgt attcgcccgt aggcctgata
    14281 agcgtagcgc catcaggctg tccgaattgc cagaaaagca aaaagctcgc cgaagcgagc
    14341 tttttaaaag tggctggggt acgaggattc gaacctcgga atgccggaat cagaatccgg
    14401 tgccttaccg cttggcgata ccccaacaaa ttattttcga accggtcgaa tacctcgacg
    14461 cgttctgaat atggtggcta cgacgggatt cgaacctgtg accccatcat tatgagtgat
    14521 gtgctctaac caactgagct acgtagccag atgatttctt cgatggctgg ggtacctgga
    14581 ttcgaaccag ggaatgccgg tatcaaaaac cggtgcctta ccgcttggcg ataccccaat
    14641 accgtcgcgg tgaaccgcaa actcgaagaa atatggctgg ggtacctgga ttcgaaccag
    14701 ggaatgccgg tatcaaaaac cggtgcctta ccgcttggcg ataccccatc cgtacaacgc
    14761 ttatcggtga atggtgcggg aggcgagact tgaactcgca caccttgcgg cgccagaacc
    14821 taaatctggt gcgtctacca atttcgccac tcccgcaaaa aagatggtgg ctacgacggg
    14881 attcgaacct gtgaccccat cattatgagt gatgtgctct aaccaactga gctacgtagc
    14941 catctttttt cgcgttacct tatcggcgtt gcggggcgca ttatgcgtat tgagccttga
    15001 agcgtcaacc tctttttcat cgaaaaacgt cggaaagtgt ctgtttggtt aggttgcgaa
    15061 cagcgtggcg caatattcgg caattattgg ttattaatcg tttttccgaa agtgggttgc
    15121 tataaaaaaa gagcccctag gggctctttc gtcatcgtta atttactggt acgccgactg
    15181 atgcacgccg accgcgcggc ctgacgggtc atccatcgtt ttgaatgctt catcccactc
    15241 aatggctttg gcggaagaac aggccacgga cgggccgccg ggtacgcatt ccgcggcgct
    15301 cggcaccggg aacaattctt caaaaatttc ccggtacaag tacgcctctt tagacgacgg
    15361 cgtgttgtat ggaaagcgga agcgggctgt ttccagttgt tgatcggaaa tctgtttcgc
    15421 cgccacctct ttcagcgtat caatccagct gtagcctacg ccgtcagaga actgctcttt
    15481 ctgacgccac gccacgcttg ctggcagata agactcgaag cactcgcgca gcacgtgttt
    15541 ttccatcttg ccgttgccgc acattttatc ctgtgggttg atacgcatcg ccacgtcgag
    15601 gaatttttta tccaggaacg gtacgcgcgc ttccacgccc caggcggaca tcgctttgtt
    15661 ggcgcgggtg cagtcataca tatgcagcgc ctgtagctta cggaccgtct cttcatgtaa
    15721 ctctttggcg ttcggcgctt tatggaagta caggtagccg ccaaacacct catcagaacc
    15781 ttcgccggag agcaccattt tgatgcccat cgctttgatc ttacgcgaca tcagatacat
    15841 tggcgttgag gcgcggatag tggttacgtc ataggtttca atgtggtaaa tcacgtcgcg
    15901 aatcgcatcc agaccctcct ggacggtgaa gtgaatttca tgatgcacgg tgccgaggtg
    15961 gttagccact tcctgggccg ccttcaggtc aggcgaacct tccagaccta ccgcaaaaga
    16021 gtgcaactgt ggccaccagg cttcggagcg ctcctgatct tcgacgcgac gggcggcgaa
    16081 ttttttggtg attgccgaga taaccgacga gtccaggccg ccggagagca gtacgccgta
    16141 gggcacgtcg gacatcaggt ggcttttcac ggattcttcc agcgcctgac gcagcgcgtt
    16201 tttgtcggtg acgttatctt ttaccgcatc gtaatcgaac cagtcgcgct gatagtactg
    16261 acgaatttcg ccgtctttgc tccacaggta gctgcccgcc gggaactctt taatggtgcg
    16321 gcagaccgga gtcagcgctt tcatttctga cgctacgtag aagttgccga attcgtcata
    16381 gcccatgtag agcggaataa taccgatatg gtcacgacca atcagataag cgtctttttc
    16441 gctgtcatac agggcgaagg cgaacatccc ctgtaaatcg tcaaggaaat ccggcccttt
    16501 ttcctgatat agcgcgagaa taacttcgca gtcggagcca gtctggaacg cgtaacgatc
    16561 gccatactcc gcgcgtaacg tctgatggtt ataaatttca ccgttcaccg ccagcacgtg
    16621 agttttctta gcgttataca ggggctgggc gccggcgtta acatcaacaa tcgacaagcg
    16681 ttcatgtgcg agaatcgcgt tatcgcaagc gtagatgccg gaccagtccg ggccgcgatg
    16741 gcgcatcagg cgtgacaatt caagggcttt tttacgcagt tccgctgcat ctgttttgat
    16801 atcgaatacg ccgaaaatag aacacatagc cttctccgtt aatctgttgc gtcgtacttt
    16861 ttgtgtttgc ttgactaaaa aatgccgcaa aggcgtggaa ggcgcaaggg gattacggtc
    16921 tgaaaaatga aaaacgcaat cgtcattgtt gattagtgaa aaatgattac gtattgcgcg
    16981 aatttattga tgaatcttca gttttatagt ggtttaattg aattatgttt ttcctgatga
    17041 cgtttcgctt atcaggccta caatgttgtt cgaaccgtag gcctgaaagc ggcgcgtcat
    17101 caggcagggg acaggtttag ataacgtcta tctcggcgac ggaagggtaa atccagcttg
    17161 ggcggaacgg catactgtca atatcattga ttgttgatac gcctgaaagc accagaatgg
    17221 tctccagacc ggcctggaac cccgccagaa tgtcggtgcg caggttgtcg ccgacgataa
    17281 cggtctcttc cgagtgcgcc tgcattttgt ttaacgccgc gcggatgatc cacgggctgg
    17341 gtttgccgac ataaaacggc ttccggccgg aaattttttc aatgcctgcg cacagcgcgc
    17401 cgcaggccgg ataaaagccg cgaccgtggg tatccgggtt ggtggcgata aagcgcgcgc
    17461 cattagcgac gaaaaatgct gctttatgca tcatgtccca gttgtaggag cgggtctctc
    17521 caacgatgac aaaatcaggg tttacatcgg taatggtaaa acccgcttta tagagctcgt
    17581 gaataagcgc gccttcgccc acgacatacg cttttttacc ttcctgacgg cgcagaaaat
    17641 cggctgtcgc cattgctgac gtataaaaca cgctgtccgg cacgttaacg ccagcggtag
    17701 caaaacggtt cgccagatcc tggccggttt gcgacgggta attggtcagc agcaccagcg
    17761 gcagaccttt ttccagaatc cccgtcagaa attccgccgc accgggtacg gctacgttgt
    17821 cgtgcatcag cacgccgtcg atatcgcaga ttacattctt gatggtcatg aactacccag
    17881 ggaatttgtg aataatccga tactataaga gcgcatcagc tttccagcaa acgttgcagc
    17941 aatgttccgt tgagcatggc gcgtttaact aaggcaaatg cgccgatagc agaacggtga
    18001 tccagcgtgg agcgtaccac cggcaaattt ttgcgaaagg cctttaacgc ctgcgtattg
    18061 atacagcttt cgatagcggg caacaggact ttatcggctt caatgatctc gccggcaatg
    18121 acgatttttt gcggattaaa caggttgata gcaatggcga tcgttttgcc caaatggcgg
    18181 ccaacatgct caatgacttc cgaggccagg ctgtcgcccc ggtttgccgc cttacagatg
    18241 gttttaatcg tgcagtcgtc aagcggaaca cggctttgat acccttgttt aagcaaattc
    18301 agcacccgtt gttcaatcgc cgcattggcg gcaatggttt ccagacagcc gaaattaccg
    18361 cagtggcagc gctcgcccaa cggctccacc tgaatatgcc caatttcgcc gacgttgccg
    18421 ttacggccaa tgaagatgcg tccgttggag ataatcccgg cacctgtacc acgatggacg
    18481 cgcaccagaa tcgagtcctc gcaatcctga ctggcgccga agtagtgttc cgccagtgcc
    18541 aggctacgaa tatcgtgacc cacgaaacag gtaacgtgaa accgtttttc cagcgcttcg
    18601 accagtcccc agttttcaac ctgaatgtgc ggcatgtaac gaatcacgcc gctttccgga
    18661 tcgacaagcc ctggcaggat caccgagata gcgatcaatt cacgaatttt acgctgacaa
    18721 ctatcaataa agacggcgat agtgttgagc agcgcatgtt ccagcgtctc ctgggtgcgc
    18781 tccggcagcg gataatgctc ctcagcgacc actttactgc tcagatcgta gagcgttaaa
    18841 gtggtgtcat gacgccccag gcgaacgcca atggcgtgga agttacgggt ttccgtgacg
    18901 atagagatag cgcggcggcc tccggtagag gcctgctgat cgacttcttt gatcagcccg
    18961 cgttcaatga gttgacgcgt aattttcgtt acgctggcgg gagcaagctg gctttgctcg
    19021 gcaatttgta tgcgcgagat aggaccatgc tggtcaatca ggcggtaaac ggccgcgctg
    19081 ttaagctgtt ttacgagatc aacgttacct atctgagctt gtccgcctgg tgtcatattc
    19141 tcacttactc aagtcaacga cctcgtcacc attaacgatg gtcttgataa ttttaaaatc
    19201 gtgggtgaac gcggtcaggt tggcgacttt actcggcgca atgctaccga gatgcttatc
    19261 aacgccgata gcgcgtgccg gatagagcgt tgccatgcgc agcacttcat ccagcgcgat
    19321 gccgcaatgc gcgaccaggt tgcgtacgcc ttcaatcatg gttaaggacg aaccgctcaa
    19381 cgtaccgttt tcatccacac acagtccatt gcggtagtat attgttttac ctgcgaaaat
    19441 gaactgctca atattggccc ccgccggtgc ggtggcgtct gtcaccagac aaagtttgtc
    19501 gcctttcagg cgtttggcat tgcgaatgtt ggcgtagtcg acatgcagac catcggcgat
    19561 aacgccgcaa taaatatccg cttcgtccag aacagcgcca gcaaggcccg gctcacgccc
    19621 tgtaatgtac ggcatcgcgt taaacaggtg agtcgcaaag gtaatcccgg cgcggaagcc
    19681 cgcttttgcc tcttttaacg tcgcgttgga gtgacctgcg gaaaccacaa tgcccgcatt
    19741 cgccagttta gcgattacgt cagcaggcac catttccggc gcgagagtga ctttggtgat
    19801 gacgtcggca ttatcgcata agaaatcgac cagcgcagcg tctggtttac gcacgaaatc
    19861 aggattatgg gtgccttttt ttaccagatt aagccagggg ccttccaggt ggagacccag
    19921 cgcctggtgc ggatgttttt ccagatactc gcgcatgacg cgaataccct gtttcatcaa
    19981 ttcgtcgctg gtagtgataa gcgttggcag aaagttagta cagcccgatt tttcattggc
    20041 tttctgcata atttccagcg tttcaacgct gacggcttct gcggtatcgt taaactgcac
    20101 tccgccgcag ccgtttagct gcacatcaat aaaaccgggg gagagaatgg ccccattcaa
    20161 tgagcgttgt tctattcccg gcggcagctc ggccatcgga caaacgcggt caatcaggcc
    20221 attagcgaca acaagcgcat ggtcatcaag aatttcgtga ccggtaa
//
LOCUS       DAJVSD010000058        20161 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.058, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000058 DAJVSD010000000
VERSION     DAJVSD010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 20161)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20161)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20161
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.058"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(156..518)
                     /locus_tag="OQP62_001745"
     CDS             complement(156..518)
                     /locus_tag="OQP62_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YibL family ribosome-associated protein"
                     /protein_id="HCS1721318.1"
                     /translation="MKEVEKNEIKRLSDRLDAIRHQQAGLSLVESADKYAELEKEKET
                     LEAEIIRLREVHSQKLSKEAQKLMNLPFRRAITKKEQADMGKLKKSVRGLIVVHPMTA
                     LGREMGLKEMTGFAKSEF"
     gene            809..1015
                     /locus_tag="OQP62_001746"
     CDS             809..1015
                     /locus_tag="OQP62_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721319.1"
                     /translation="MAKIGENVPLLIDKAVDFMASSQAFREYLNKTPPRDYVPSEVPS
                     ESTPIYLQRLEYYRRLYRPKEERG"
     gene            complement(1025..1615)
                     /gene="mtlR"
                     /locus_tag="OQP62_001747"
     CDS             complement(1025..1615)
                     /gene="mtlR"
                     /locus_tag="OQP62_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol operon repressor MtlR"
                     /protein_id="HCS1721320.1"
                     /translation="MTQNPAQVSLRPNNRLSDMQAIMEQTQAFENRVLERLNAGKTVR
                     SFLITAVELLTEAVNILVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGV
                     LSRTEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVMALPPPPHFDTSDAA
                     LYAMQIQRYQQAVRSTMVLSLTELISKISLKKAFQK"
     gene            complement(1612..2760)
                     /gene="mtlD"
                     /locus_tag="OQP62_001748"
     CDS             complement(1612..2760)
                     /gene="mtlD"
                     /locus_tag="OQP62_001748"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HCS1721321.1"
                     /translation="MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARH
                     SYQVHVVGENEQVDTVSGVNAVSSIGDDVVDLIAHVDLITTAVGPVVLERIAPAIAKG
                     LVKRKAQGVDAPLNIIACENMVRGTTQLKGHVMNALADGDKAWVEQHVGFVDSAVDRI
                     VPPSASATNDPLEVTVETFSEWIVDKTQFKGALPNIPGMELTDNLMAFVERKLFTLNT
                     GHAITAYLGKLAGHQTIRDAILDEGIRAVVKGAMEESGAVLIKRYGFDADKHAAYIQK
                     ILGRFENPYLKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYGLPHVNLVKGIAAAMHF
                     RSDEDPQAQELAALITEKGPQAALAQISGLDANSDVVAEAVNAYNATK"
     gene            complement(2981..4897)
                     /gene="mtlA"
                     /locus_tag="OQP62_001749"
     CDS             complement(2981..4897)
                     /gene="mtlA"
                     /locus_tag="OQP62_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICBA"
                     /protein_id="HCS1721322.1"
                     /translation="MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLP
                     NETLAKLVGPMITYLLPLLIGYTGGRLVGGERGGVVGAITTMGVIVGADMPMFLGSMI
                     AGPLGGYCIKKFDSWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPAVEVLSKI
                     LAAGVNFMVAHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHEMGKSIFFLIE
                     ANPGPGMGVLLAYMFFGRGSAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILG
                     GMTGVFTLTILNGGLVSPASPGSILAVLAMTPKGAYFANIAAIVAAMAVSFVVSAILL
                     KTSKVKEEDDIEAATRRMHDMKAESKGASPLAAGDVTNDLSHVRKIIVACDAGMGSSA
                     MGAGVLRKKVQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLT
                     NFLDSGLYTSLTERLVAAQRHNTNEEKVRDHLKDSFEEGDNNLFKLGAENIFLGRKAA
                     NKEEAIRFAGEQLVKGGYVEPEYVEAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKT
                     GVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTT
                     SVDEVLELLAGKKA"
     gene            5372..5980
                     /locus_tag="OQP62_001750"
     CDS             5372..5980
                     /locus_tag="OQP62_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HCS1721323.1"
                     /translation="MKLIGSYTSPFVRKISVLLLEKGITFEFINELPYEADNGVAQYN
                     PLGKVPALVTEKGEYWFDSPIIAEYIELLDIAPAMLPRDPMAALKVRQLEALADGIMD
                     AALVSVREQARPAAQQSETELLRQREKINRSLDMLESYLSDGTLKTDTVNLATIAIAC
                     AVGYLNFRRVAPGWCVSRPHLVKLVETLFQRESFARTEAPKA"
     gene            6079..7470
                     /gene="selA"
                     /locus_tag="OQP62_001751"
     CDS             6079..7470
                     /gene="selA"
                     /locus_tag="OQP62_001751"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HCS1721324.1"
                     /translation="MTSETRTLYSQLPAIDRLLHDSAFLSLRDRYGHTQVVDLLRRML
                     DDARDVIRNTQTLPDWYADWAQEAKLRLENAAQSALRPVINLTGTVLHTNLGRALQAQ
                     EAIEAVTQAMRAPVTLEYDLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLM
                     LAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHAKDYRQAVNEN
                     TGLLMKVHTSNYSIEGFTKTVEEAELAEIGRELDIPVVADLGSGSLVDLSQYGLPKEP
                     MPQQLIAAGVSLVSFSGDKLLGGPQAGIIVGKKAMIAQLQSHPLKRALRADKMTLAAL
                     EATLRLYLHPEALAEKLPTLRLLTRSEASIREQAQRLQARLAARYGDEFALEVKPCLS
                     QIGSGSLPVDRLPSAAMTFTPHDGRGSRLEALAARWRTLPVPVIGRIYDGRLWLDMRC
                     LEDESRFMEMMLK"
     gene            7467..9317
                     /gene="selB"
                     /locus_tag="OQP62_001752"
     CDS             7467..9317
                     /gene="selB"
                     /locus_tag="OQP62_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HCS1721325.1"
                     /translation="MIIATAGHVDHGKTTLLQAITGINADRLPEEKKRGMTIDLGYAY
                     WPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLQILQLT
                     GNLQLTVALTKADRVDEARISEVREEVLAALDNYGFADTVLFVTAANEGRGIAELRAH
                     LQQLPARLHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVNVGDTLWLTGVNTPMRV
                     RSLHAQNQPTDHAYAGQRIALNIAGDAEKEQLNRGDWLLSDAPAGEAFSRVIVSLALH
                     APLSQWQPLHIHHAASHVTGRVSLLEGALAELIFDTPLWLADNDRLVLRDISARATLA
                     GARVVTLNAPRRGKRKPDYLHWLSTLADAQDDSAALAIHLERGAVNLPDFGWARQLNP
                     LGMRQLIEQHGFIQAGDNLLSAPVAARWQRKILDTLATYHEQHRDEPGPGRERLRRMA
                     LPMEDEALVLMLIERMRDEGLIHSHHGWLHLPDHKAGFSDEQQAVWQKVEPLFGDEPW
                     WVRDLAKETGTEEQLMRLVLRQAAQQGIITAIVKDRYYRNDRIVAFANMIRELDQERG
                     STCAADFRDRLNVGRKLAIQILEYFDRIGFTRRRGNDHLLRDALLFPQKE"
     gene            complement(9602..10483)
                     /locus_tag="OQP62_001753"
     CDS             complement(9602..10483)
                     /locus_tag="OQP62_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001188270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HCS1721326.1"
                     /translation="MQQYIGIDVGGTHVKYGVINSDGEELTHHQFDTPEDASTFTRKW
                     QDVVARCQQDYDIAAIGVSFPGHINPHNGHAAKAGALAYLDDVNLMELFSGLTDLPLV
                     VENDANCAALGEMWRGAGQHYDNLVCITIGTGIGGGIIVGRELYRGAHFHAGEFGVMP
                     VGNNGESMHKIASTSGLMASCRQALALPAEEMPPADVIFERMATDVHLREAVNDWARY
                     LSRGVYSVISMFDPGVVLIGGGISEQEKLYPLLTRHLETFEMWEALQVPIQPCQLGNQ
                     AGRLGAVWLAQQKLDRR"
     gene            10652..12190
                     /gene="aldB"
                     /locus_tag="OQP62_001754"
     CDS             10652..12190
                     /gene="aldB"
                     /locus_tag="OQP62_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase AldB"
                     /protein_id="HCS1721327.1"
                     /translation="MTNNPPSTRIQPSEYGYPLKLKARYDNFIGGDWVAPADGEYYQN
                     LTPVTGQPLCEVASSGKKDIDLALDAAHKAKDKWAHTSVQDRAAILFKIADRMEQNLE
                     LLATAETWDNGKPIRETSAADIPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEP
                     LGVVGQIIPWNFPLLMASWKMAPALAAGNCVVLKPARLTPLSVLLLMEVIGDLLPPGV
                     VNVVNGAGGEIGEYLATSKRIAKVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNI
                     FFADVMDEEDAFFDKALEGFALFAFNQGEVCTCPSRALVQESIYERFMERAIRRVESI
                     RSGNPLDSGTQMGAQVSHGQLETILNYIDIGKKEGADILTGGRRKELDGELKEGYYLE
                     PTILFGKNNMRVFQEEIFGPVLAVTTFKTMEKALEIANDTQYGLGAGVWSRNGNLAYK
                     MGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKCLLVSYSDKP
                     LGLF"
     gene            complement(12308..14263)
                     /locus_tag="OQP62_001755"
     CDS             complement(12308..14263)
                     /locus_tag="OQP62_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 127 protein"
                     /protein_id="HCS1721328.1"
                     /translation="MNVLEVDLHKLTVSDPLLGQYQQLVRDVVIPYQWDALNDRIPEA
                     EPSHAIENFRIAAGQQTGDFYGMVFQDSDVAKWLEAVAWSLCQKPDPELEKTADEVIE
                     LVAAAQCDDGYLNTYFTAKAPQERWSNLAECHELYCAGHLIEAGVAFFQATGKRRLLD
                     VVCRLADHIDSTFGPGENQLHGYPGHPEIELALMRLYEVTEQPRYMTLASYFIGQRGA
                     QPHFYDEEYEKRGQTSYWHTYGPAWMVKDKAYSQAHLPISQQQTAIGHAVRFVYLMTG
                     VAHLARLSNDEGKRQDCLRLWKNMAQRQLYITGGIGSQSSGEAFSSDYDLPNDSVYAE
                     SCASIGLMMFARRMLEMEADSQYADVMERALYNTVLGGMALDGKHFFYVNPLEVHPKS
                     LKFNHIYDHVKPIRQRWFGCACCPPNIARVLTSIGHYIYTPRADALYINMYVGNSMEI
                     PVENGALKLRISGNYPWHEQVKIAIDSVQPVRHTLALRLPDWCPEAKVTLNGLEVEQD
                     IRKGYLHIRRTWQEGDTISLTLPMPVRRVYGNPLARHVAGKVAIQRGPLVYCLEQADN
                     GEELHNLWLPKESEFRVFEGKGLFAHKMLIQAEGEKQSAADAQHQALWHYDNAPSSRQ
                     PQTLTFIPWFSWANRGEGEMRIWINER"
     gene            14527..15339
                     /locus_tag="OQP62_001756"
     CDS             14527..15339
                     /locus_tag="OQP62_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1721329.1"
                     /translation="MLELSITLPIKVQNGGLFISRGIGRHPARRLQSWEIIFVEKGCL
                     KIQEECVFCVEAGESLLLWPHRRHIGVEEFPADLKFYWLHFEVKAPDSDPRWLTHLSV
                     PQHTQVADPQALIALFRQFMNEQEKHQRSPALEFIVLLILQQLTVDARQNENAEAAGV
                     SLAWKAQQLIRTHYHLPLSSAVLAKELHCNVDYLGRVYRRVFHLTLTEAIHRQRVREA
                     EKLLISDARSLKEVAERCGFNDVGYFRQIFRKHTGLTPTAWKRRYSKEHVNS"
     gene            complement(15500..16195)
                     /gene="araD"
                     /locus_tag="OQP62_001757"
     CDS             complement(15500..16195)
                     /gene="araD"
                     /locus_tag="OQP62_001757"
                     /EC_number="5.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HCS1721330.1"
                     /translation="MLEQLKAEVLAANLALPAHGLVTFTWGNVSAVDETRKLMVIKPS
                     GVEYEVMTADDMVVVEIASGKVVEGNKKPSSDTATHLALYRRYPQIGGIVHTHSRHAT
                     IWSQAGLDLPAWGTTHADYFYGAIPCTRLMTVEEINGEYEYQTGEVIIKTFEERGLDP
                     AQIPAVLVHSHGPFAWGKNAADAVHNAVVLEECAYMGLFSRQLAPQLPDMQPELLDKH
                     YLRKHGANAYYGQ"
     gene            complement(16189..17049)
                     /locus_tag="OQP62_001758"
     CDS             complement(16189..17049)
                     /locus_tag="OQP62_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase"
                     /protein_id="HCS1721331.1"
                     /translation="MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDER
                     LSRLEWTSAQRASLVNAMLESGVAIPSMCLSAHRRFPFGSRDEAVRQRAREIMTKAIR
                     LARDLGIRTIQLAGYDVYYEEHDEGTQQRFAEGLAWAVEQAAAAQVMLAVEIMDTAFM
                     NSISKWKKWDEMLSSPWFTVYPDVGNLSAWGNDVTAELKLGIDRIAAIHLKDTLPVTG
                     DNPGQFRDVPFGEGCVDFVSIFKTLHELNYRGSFLIEMWTEKASEPVLEIIQARRWIE
                     SRMQEGGFTC"
     gene            complement(17042..17704)
                     /gene="ulaD"
                     /locus_tag="OQP62_001759"
     CDS             complement(17042..17704)
                     /gene="ulaD"
                     /locus_tag="OQP62_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HCS1721332.1"
                     /translation="MSRPLLQLALDHTSLEAAQRDVALLQDHVDIVEAGTILCLTEGL
                     SAVKALRAQCPEKIIVADWKVADAGETLAQQAFSAGANWMTIICAAPLATVEKGHAVA
                     QSCGGEIQMELFGNWTLDDARDWYRVGVRQAIYHRGHDAQASGQQWGEADLARMKALS
                     DIGLELSITGGITPADLPLFRDINVKAFIAGRALAGAAHPAQVAAEFHAQIDAIWGEK
                     HA"
     gene            complement(17701..19197)
                     /locus_tag="OQP62_001760"
     CDS             complement(17701..19197)
                     /locus_tag="OQP62_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HCS1721333.1"
                     /translation="MSNYWLGLDCGGSWLKAGLYDGAGREVAVQRLPLHALSPQPGWV
                     ERDMTELWQQCASVISKLLTHTGVSGSQIRGLGISAQGKGLFLLDKSDRPLGKAILSS
                     DRRAMEIVQRWQKEAVPQKLYPLTRQTLWTGHPVSLLRWVKENEPQRYAQIGSVMMTH
                     DYLRWCLTGVKGCEESNISESNLYNMATGQYDPRLTEWLGISEIDSALPPVVGSAEIC
                     GEITAQAAAITGLAAGTPVVGGLFDVVSTALCAGIEDESTLNAVMGTWAVTSGIAHGL
                     RDHEAHPYVYGRYVNDGQYIVHEASPTSSGNLEWFTAQWGYLSFDEINQAVASLPKAG
                     SDLFFLPFLYGSNAGLEMTCGFYGMQALHNRAHLLQALYEGVVFSHMTHLNRMRERFT
                     EVCALRVTGGPAHSDVWMQMLSDVSGLRIELPQVEETGCFGAALAARVGTGVYRDFHE
                     AQRDLQHPVRTLLPDMTAHALYQRKYRQYQDLIEALQGYHARIKEHAL"
     gene            complement(19201..20121)
                     /locus_tag="OQP62_001761"
     CDS             complement(19201..20121)
                     /locus_tag="OQP62_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001329952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HCS1721334.1"
                     /translation="MAAQSLRFGYETPQTDSQHIAAKKFNELLKEKTNGELTLKLFPD
                     STLGNAQAMISGVRGGTIDMEMSGSNNFTGLAPVFNLLDVPFLFRDTSHAHKTLDGKV
                     GDELKKSLDSKGLKVLAYWENGWRDVTNSRAPVKTPGDLKGLKIRTNNSPMNIAAFKI
                     FGANPIPMPFSEVYTGLETRTIDAQEHPINVVWSAKFYEVQKYLSLTHHAYSPLLLVI
                     NKAKFDALSPQFQEALLSSAKEAGDYQRKLVAEDQQKIIDGMKEAGVEVLTDIDRKAF
                     SDALGSQVRDMFLKDNPQGADLLKAVDEVQ"
BASE COUNT         4438 a         5486 c         5563 g         4674 t
ORIGIN      
        1 ggaatttttt atcctgaaaa agcagggatt gccgttaaaa atgaacttgt atataaacga
       61 tgtaaatact tctaggaaaa attcggaata tagcccgatg cattcaagac accctccgta
      121 caacgggtgt cttgagagcc tgggatgcgg aaggtttaga actcgctctt cgcgaaacct
      181 gtcatctctt tgagtcccat ttcccggccc agcgccgtca tcgggtgcac tacgatcaga
      241 ccacgcacgc ttttcttcaa cttgcccata tcggcctgct cttttttagt gatagcgcgg
      301 cgaaacggca ggttcatcag cttctgcgct tctttactca gtttctggct gtgtacttcg
      361 cgcagacgga taatttctgc ttccagcgtc tctttttctt tttccagctc cgcgtattta
      421 tcggcggatt caaccagcga gagacctgcc tgctggtggc gaatagcgtc aagacgatcg
      481 ctcaggcgtt taatttcgtt tttttcgact tctttcatgg gatagcttct gatagaaatg
      541 ggatagatac cctatagtat gcgcgcagtg ggtgattctt cacaactcat ggcgtaacga
      601 taatcaatta tggtaaatat tacaccgcta attatttatt tatccatttg aaaataaagt
      661 gctttttttc gaaagaaaag atgaaacgcc tttttgtcgg caagaaaagc aattaagcac
      721 attttcctca atgatgacgc taaatcgatc ctaaactcaa ataagcggcc gcgggagtca
      781 gacgcggatc acacatggag gatctatcat ggcaaaaata ggtgagaacg taccacttct
      841 tattgataaa gccgtcgatt ttatggcgtc cagccaggcg ttccgtgagt acttgaataa
      901 aacgccgccg cgtgattatg ttccttccga agtgccgtcg gagagcacgc ccatttattt
      961 gcagcgtctg gaatattacc ggcggctgta ccgaccaaaa gaagaaagag gttaacggcg
     1021 ggatttactt ttgaaaggcc ttttttaagc tgattttaga aatcagctcg gtcagagaga
     1081 gaaccatcgt cgaacgcacc gcctgctggt agcgctgaat ttgcatggcg tatagcgccg
     1141 cgtcggatgt atcaaaatgt ggcggcggcg gcagcgccat gacgcaatgc agttcgccaa
     1201 acggcccgag gatttcatcg tcggtaaagg cgtactcatt gccgtcgtga ttcagctctt
     1261 cgcgcagcgc cattaacagc tccgcatctt catattcggt gcggctgagt acgcccaggc
     1321 catagataag tttcagacgt accgaaagat cgcccagcgg cccgtcgccg tccagcaacg
     1381 gttccacagc gtatttcacg gcatagtcgt ctttgcgaaa cacctgaagc accagaatat
     1441 tcaccgcctc ggtcagtaac tcgacggcgg taatcaggaa gctccgtacg gttttgccag
     1501 cattcagacg ctcaagcaca cgattttcaa aggcctgggt ttgttccatt attgcctgca
     1561 tatctgacaa tctgttattt gggcgcaggc taacctgcgc cgggttctgc gtcatttggt
     1621 cgcgttatat gcgttaaccg cctccgccac cacatcgcta ttggcatcca gcccggaaat
     1681 ttgcgccagc gcggcctgcg ggcctttttc ggtaatcagc gccgccaact cttgtgcctg
     1741 cggatcttca tcgctacgga aatgcatcgc cgccgcgatc cctttcacca gattcacatg
     1801 cggcagacca tattccaggg tgccaagcag cggtttgatc agacggtcgc ccgcgctgag
     1861 tttgcgtagc ggctgacggc ctacgcgttc gacgtcatct ttcagatacg ggttttcaaa
     1921 acgaccgagg attttctgaa tgtatgccgc atgtttgtcg gcatcaaaac cgtagcgttt
     1981 gatcagcacc gcgccgcttt cttccatcgc gcctttcacc accgcgcgaa taccctcatc
     2041 gagaatggcg tcgcgaatgg tttgatgacc ggctaatttg ccgaggtacg cggttatagc
     2101 atgacctgtg ttcagcgtga agagtttacg ttcgacaaat gccatcaggt tatccgttaa
     2161 ctccatcccc ggaatgtttg gcaacgcgcc tttaaactgg gttttatcga cgatccactc
     2221 gctgaaggtt tctaccgtca cttccagcgg atcgttggtc gcagaagcag atggcggcac
     2281 aatacggtca acggcggaat cgacaaaacc gacgtgctgt tcaacccagg ctttatcgcc
     2341 atccgccagc gcgttcatta cgtggccttt cagctgcgtg gtgccgcgca ccatattttc
     2401 gcaggcgatg atattcagcg gggcatccac gccctgcgcc ttacgtttta ccagcccttt
     2461 agcgatagcc ggtgcgatac gctcaagcac caccgggccc acggcagtgg tgattaaatc
     2521 aacgtgggca atcaggtcga caacatcatc gccgatgctg ctgacagcgt tgacgccgga
     2581 aacggtatcc acctgctcat tttcacccac aacatgaacc tgatagctat gacgggcatt
     2641 cagggcatcg agtacgacct ggtttacatc cgcaaacgtc agttgtatcc ccgcgtcagc
     2701 cagcaatttg ccgataaagc cacgaccgat attacctgcg ccaaaatgta atgctttcat
     2761 agtattaacc ttcattaatg tttttacccg agagggctgg ggtgaggctt ttccctcaac
     2821 ctaaccctct ccacaagaga gaggatatcg ccttcatatt tagaactgca gatgcgttgg
     2881 ctctcctcgc tcaccccagt cacgtactta tgtacgctcc tggggattca ctgcgttgcc
     2941 gccttcctgc agctcgaact attttgggga tacttaactg ttaagctttt ttacctgcca
     3001 gcagttccag cacttcatcc acgctggtgg tgtgcgccag acgttcgatc acggattcat
     3061 catccagcgc gttggtcaag ctggtgatga cctggatgtg ctcattgtta cgtgcggcga
     3121 taccaatgac cagacgggca atatcgtctt cttcttcacc gaagcgtacg ccttccggat
     3181 actggcagaa caccacgccg gttttcagca cgcggtcttt agcttctacg gtaccgtgcg
     3241 gtaccgcgat ggattcaccg aggtaagtcg gcgtcagctt ttcgcggtcc agcatcgcct
     3301 cgacgtattc cggctcaaca tagccgcctt tcaccagttg ttcaccggca aagcgaatcg
     3361 cctcttcttt gttagcggct ttacggccca ggaagatatt ctccgcgccc agcttgaaca
     3421 ggttgttatc gccctcttca aagctatctt tcagatgatc gcggactttc tcttcattag
     3481 tattgtggcg ctgtgcggca accagacgtt cggtcaggct ggtgtacagg ccgctatcca
     3541 ggaagttggt cagcgaaata tgctgcgcct gcggtacctg acgcatagca cgttcggtca
     3601 ggtcgcggtg agtaatgacc agatccacat ccggcggcag attgttaatg gcgctgttgg
     3661 tgacggaaat ctgagacaga cccgcatcct gtactttctt acgcagtacc cctgcgccca
     3721 tcgcgctgga acccataccg gcatcgcaag ctacgatgat tttacgcaca tggctgaggt
     3781 cattggtgac gtcgccagcc gccagcggag aggcgccttt agattccgct ttcatgtcat
     3841 gcatacgacg ggtggccgct tcaatatcat cttcttcttt cactttgctg gttttcagca
     3901 gaattgcaga caccacgaag gagaccgcca ttgccgccac gatggccgcg atgttagcga
     3961 agtaagcgcc ttttggcgtc atcgccagta ccgccagaat ggagcctgga gacgccggag
     4021 agaccagacc gccgttcagg atggtcaggg tgaatacgcc ggtcataccg ccgagaatca
     4081 ccgccagaat caggcgtggg ttcatcagca cgtacgggaa gtaaatttcg tggataccgc
     4141 ctaggaagtg gataattgcc gcgccgcccg cagactgttt agcgctgccg cgaccgaaga
     4201 acatgtacgc cagcaggacg cccatccccg gacccgggtt agcttcaatc aggaagaaga
     4261 tggatttacc catctcatgg gactgctgga tacccagcgg tgagaagatg ccgtggttaa
     4321 tcgcgttatt gaggaacagg attttcgccg gttcaacaaa aatggacgcc agcggcagca
     4381 tatcgtgcgc caccatgaag ttaacgcccg ccgccagaat tttggacagg acttcaaccg
     4441 ccggaccaat accgaggaac gccaggatgg cgaggatcat accgatgatg ccagcggaga
     4501 agttgttcac cagcatctca aaaccggatt tgatcttacc gtctacccaa ctgtcgaatt
     4561 tcttaatgca gtagccgcct aatggaccgg cgatcatcga gccgaggaac atcggcatat
     4621 ccgcgccgac aataacgccc atggtagtaa tagcgcctac cacgccgccg cgttcgccgc
     4681 caaccagacg accgccggta taaccgatga gcagcggcag caggtaggtg atcatcggac
     4741 caaccagttt cgccagcgtt tcgttaggca accaccctgt tggaataaat aatgcggtga
     4801 taatacccca cgcgataaac gcgccgatat taggcatcac catattgctg aggaatcgac
     4861 caaagctttg cactttgatc ttaatatcgg atgacataaa aacacccctt cttatgttgc
     4921 tgtcgcgcag gctgaaagcc cgaggtttgt taatgtagcg gcagaggtag ccggaccctg
     4981 tagtgtagat actgcgcaat ctggcactga atcgttcaac tgtccagaca aggataattt
     5041 atgtgatttg cgtcacataa atataggggt agagaggtaa tttatgtgat attgatcaca
     5101 aagttactgt gtaaaaaaac aacgaatctc atttttagcc cttaaaaggc tattttatgt
     5161 gagatatttc acacttttat tttggtgctt tgttgaattt ttgtgatcct cttcacatga
     5221 aattttaagc ccgggtaacg tcaatacgat ccgacaaaca ttttgtcgcg agccctctca
     5281 cgttatgtca ttcagcaact tccttttgtg tctcttttcg tcttatttga gccatactat
     5341 gatttttact ggttggcaaa aaggacacgg catgaaactc atcggtagct acaccagccc
     5401 ttttgtgcgc aaaatctctg ttctgctgct cgaaaagggt attaccttcg aatttattaa
     5461 tgaactacct tacgaggcgg ataacggcgt ggcgcaatac aaccctctgg gtaaggtgcc
     5521 agcgctggtg acggagaaag gggagtactg gttcgattcg ccgatcatcg cggaatatat
     5581 tgaactgctg gatatcgcgc cagcgatgct cccgcgtgac ccgatggcag cgcttaaagt
     5641 tcgccagctt gaagcgttgg ctgacggcat tatggatgca gcgttggtgt ctgtacgcga
     5701 acaggcgcgc ccggcggcgc aacaatcgga aacggaactg ctgcgccagc gggaaaaaat
     5761 caaccgcagc ctggatatgc tcgaaagtta tctgagcgac gggacgctaa aaacggatac
     5821 ggtcaatctg gcgactatcg cgattgcctg tgcggtaggc tatctcaact tccgccgggt
     5881 cgcgcccggc tggtgtgtta gccgccccca cctggtcaaa ctggtcgaaa cgctttttca
     5941 acgcgaaagc tttgcccgca ccgaagcgcc aaaggcttga cgcgcattat gtccgcctga
     6001 gcaaactcac gttacaatcc cccttatgtc gatatccctc tcccgccagg agagggccac
     6061 caacagccag gcattttcat gacaagcgaa acgcgtacac tctacagcca gcttcctgct
     6121 atcgatcgtt tattgcacga tagcgccttt ctttctctgc gcgatcggta tggccatacc
     6181 caggtggttg atctgcttag gcggatgctt gacgacgcgc gcgacgtcat acggaatacg
     6241 caaacgcttc ccgactggta cgcagactgg gcgcaagagg cgaaactccg gctggaaaat
     6301 gcggcgcaaa gcgcgctgcg cccggtgatt aacctgacgg ggacggtgct gcacaccaat
     6361 cttggccgcg cattgcaggc gcaagaagcg attgaggcgg taacgcaggc gatgcgcgcg
     6421 ccggtgacgc tggaatacga tttagatggc gccgggcggg ggcatcgcga ccgggcgctg
     6481 gcgacgctgt tatgccgtat caccggggcg gaggacgcct gtatcgtcaa taacaatgcg
     6541 gcggcggtat tgctgatgct ggcggcgacc gccagcggca aagaggtggt ggtttcgcgt
     6601 ggcgaactgg tcgaaatcgg cggcgcgttt cgtattccgg atgttatgcg ccaggcgggc
     6661 tgtacgctgc atgaagtggg caccaccaac cggacgcacg cgaaagatta ccgtcaggcg
     6721 gtaaatgaaa ataccgggct gttgatgaag gtgcatacca gtaattacag cattgagggc
     6781 tttaccaaaa cggtagagga agcggaactg gcggaaatcg ggcgagagct ggatattccg
     6841 gtggtggcgg atctgggcag cggttcgctg gtggatttaa gccaatatgg cttacccaaa
     6901 gagccgatgc cgcaacagct cattgccgca ggcgtcagcc tggtaagctt ctccggcgat
     6961 aagttgttgg gcgggccgca ggccgggatc atcgtcggca aaaaagcgat gattgcccaa
     7021 ctgcaaagcc atccgctgaa acgcgctctg cgcgcggata aaatgacgct ggcggcgctg
     7081 gaggcaacgt tacgtctgta tctgcacccg gaagcgttgg cggagaaatt acccaccctg
     7141 cgtctgttaa cccgcagtga agcgtcgatt cgcgaacaag cgcagcggtt acaggcgcgg
     7201 ttggcggcac gttacggcga tgaatttgcg ctggaggtta aaccctgtct gtcgcaaatc
     7261 ggcagcggtt cattaccggt agaccgcctc cccagcgccg ccatgacctt taccccgcac
     7321 gacgggcgcg gtagtcggct ggaggcgctg gcggcccgct ggcgcacgct gcctgtaccg
     7381 gtcattggcc gaatttatga tggccgttta tggctggata tgcgctgtct tgaagacgaa
     7441 agccggttta tggagatgat gctgaaatga ttattgcaac tgccggacac gtagaccacg
     7501 gtaaaacgac gttgctccag gcgattaccg gcattaatgc cgatcgcctg ccggaagaga
     7561 aaaaacgcgg gatgactatc gatctgggct acgcctattg gccgcagccg gatggtcgtg
     7621 tgctgggctt tatcgatgtg cctgggcatg aaaaattcct ctctaacatg ctggcgggcg
     7681 taggcggtat cgatcacgct ttgctggtgg tcgcctgtga tgacggcgtt atggcgcaaa
     7741 cgcgcgagca tttacagatc ctacagctga cgggcaatct ccagctcacc gtcgcgctga
     7801 ccaaagccga tcgcgtggac gaggcgcgta tcagcgaagt acgtgaagag gtgctggcgg
     7861 cgctcgacaa ctatggcttc gccgataccg ttttatttgt caccgccgcc aatgaaggac
     7921 gcggtattgc agaacttcgc gctcatttac agcagcttcc tgcacgttta cacgccgcgc
     7981 agcatcgctt ccgtctggct atcgaccgtg cgtttacggt gaaaggggcg ggactggtgg
     8041 tgaccggaac ggcgttgagc ggagaggtaa acgtgggcga tacgctatgg ttgaccggcg
     8101 ttaatacgcc gatgcgcgta cgaagtctac acgcgcaaaa tcagcctacc gaccatgcgt
     8161 atgccgggca acgtattgcg ctcaatattg cgggcgatgc ggagaaggag cagcttaacc
     8221 gcggcgactg gctgctttcc gatgcgccgg cgggggaggc tttttcccgg gtgatcgttt
     8281 ctctggcgct tcatgcgccg ctttcccaat ggcaaccgct acatattcac catgccgcca
     8341 gccatgtgac cggtcgcgtc tctttgctgg aaggcgcgct ggccgagctg atctttgata
     8401 cgccgttgtg gctggccgat aatgacagac tggtattgcg tgatatttcc gcacgcgcca
     8461 cccttgccgg cgcacgcgtg gtgacgctta acgcgccgcg ccgcggtaaa cgtaagccag
     8521 attatttgca ctggctttca acgcttgccg atgcgcagga cgatagcgca gcgttggcca
     8581 ttcatctgga acgcggggcc gtcaacctgc cggatttcgg ttgggcgcgt cagcttaatc
     8641 ctctcggtat gcgtcagctt attgagcaac atggttttat ccaggccgga gacaatctgt
     8701 taagcgcgcc cgtcgccgcc cgctggcagc gtaagattct tgatacgctg gcgacctacc
     8761 acgaacagca ccgcgatgaa ccggggccgg gacgcgagcg tttacgccgc atggccctgc
     8821 caatggagga tgaagcgctg gttctgatgc tgatcgagcg gatgcgcgac gagggcctga
     8881 ttcatagcca tcacggttgg ttgcatctgc cggatcataa agcgggattt agcgatgagc
     8941 agcaggccgt ctggcaaaaa gtcgaaccgc tatttggcga tgagccctgg tgggtacgcg
     9001 atctggcgaa agagaccgga acggaagaac aattgatgcg gctggtgctg cggcaggcgg
     9061 cacagcaagg catcattacc gcgatcgtaa aagatcggta ctatcgtaac gatcggattg
     9121 tcgctttcgc caatatgatc cgcgagctgg atcaagagag aggatcaacc tgtgcggcgg
     9181 attttcgcga caggctgaat gtagggcgga aactggccat tcagattctt gaatattttg
     9241 accggattgg atttacacga cgtcgtggga atgatcattt attacgtgat gcgttattat
     9301 ttccgcaaaa agaatgaaat ggttaaatta aataacaaat gaagcaatac aattattgcg
     9361 ttgctttata aaaagcacat cagcaaatga acctgatgtg ctttttattt ttctggcttc
     9421 ttaaaatagc catcgtgagc ctattatcag aatagttttg cccatattct ttgcgcctta
     9481 ttcaggcgac tcacgacgag attgtggaac tttatcgcgc ggcgatgtaa cgcctttgcc
     9541 cggtggcgcg gacgcttacc gggcctgcgt agacgatgca ggccggatag ggcgtaacac
     9601 gttatcttcg gtcgagcttt tgctgcgcca gccagacggc gcccagcctg cctgcctgat
     9661 ttcccagttg gcagggctga atcggcacct ggagcgcctc ccacatttca aacgtttcaa
     9721 gatgccgcgt caggagcggg tagagctttt cctgttcgct tattcctccg ccgatcagca
     9781 ccacgcccgg atcaaacata gagatcacgc tgtaaacgcc gcgtgacaga taacgcgccc
     9841 agtcattgac cgcctcacgc agatgaacat cggtcgccat tcgttcgaag atcacatccg
     9901 caggcggcat ctcttctgca ggcagcgcca gagcctggcg gcacgacgcc attaatccgc
     9961 tggttgacgc gattttatgc atactttcgc cattattccc gaccggcatg acgccgaatt
    10021 caccggcgtg gaaatgtgcg ccgcgataca gttctcgtcc gacgataata ccgccgccaa
    10081 tgccggttcc aatggtgata cagaccagat tgtcataatg ctgcccggcg cctcgccaca
    10141 tttcgcccag cgccgcgcag ttcgcgtcgt tctccacgac cagcggcaga tcggttagcc
    10201 cgctgaacaa ctccatcagg ttgacgtcat ccaggtatgc cagcgcgccc gcttttgccg
    10261 catgaccgtt atggggatta atatggccgg ggaaactgac cccgattgcc gcaatgtcat
    10321 agtcctgctg gcaacgcgcc accacatcct gccatttgcg ggtaaacgtg gaggcgtcct
    10381 ctggcgtatc gaattgatga tgggttaatt cttcgccgtc actgttaatc acgccatatt
    10441 tgacgtgagt tcctcccaca tcaataccga tatattgctg catagtgttc tccgtacgtt
    10501 aaacaggcac ctgtttagta tggctaaaac cagacggaga aacgtaaagg aaagtaattc
    10561 gtgattgctg tcgtaaagcg agaaaccatt ggcgaaaaat tcaccagtac cgtctaccct
    10621 tgtggagtac ctttacaata aggagttggt catgacgaac aatccccctt caacacgtat
    10681 tcagccaagt gaatacgggt acccactgaa gttaaaagcc cgctatgaca attttattgg
    10741 cggtgactgg gttgcgcccg ccgacggcga atattatcaa aacctgacgc cagtgaccgg
    10801 ccagccgcta tgtgaagtcg cttcctccgg taaaaaagat atcgatttag cgctcgacgc
    10861 cgcgcataag gcgaaagata agtgggcgca tacgtcagta caagaccgtg ccgctatctt
    10921 gtttaagatc gccgatcgga tggaacaaaa cctcgaactg ttggcgacag cggaaacttg
    10981 ggataacggt aaaccgattc gtgaaaccag tgccgccgac ataccgctgg cgatcgatca
    11041 tttccgctat ttcgcctcct gtatacgtgc gcaggagggc gggatcagcg aagttgatag
    11101 cgaaaccgtg gcctaccatt ttcacgaacc gcttggtgtc gtggggcaga taatcccgtg
    11161 gaactttccg ctgctgatgg caagctggaa aatggcgcca gcgctggcgg caggtaactg
    11221 cgtggtgctt aaaccggcac gcctgacgcc gctttccgtt ttactgttaa tggaagtcat
    11281 tggcgatctg ttaccgccgg gcgttgtcaa cgtcgtgaac ggcgcgggcg gcgagattgg
    11341 cgaatatctg gcgacctcaa aacgtatcgc gaaggtggcg tttaccggtt cgacggaagt
    11401 gggtcaacag atcatgcagt acgccacgca gaacattatt ccggtgacgc tggagttagg
    11461 cggcaagtcg cccaatatct tcttcgccga cgtgatggat gaggaagatg cgttctttga
    11521 taaagcgctg gagggatttg ccctgtttgc ctttaaccag ggcgaggtgt gtacctgtcc
    11581 aagccgtgcg ctggttcagg agtccatcta tgagcgcttt atggagcgcg ctattcgccg
    11641 ggtggagagc attcgcagcg ggaacccgct agatagcggt acacagatgg gagcgcaggt
    11701 ctctcacggc cagcttgaga ctatcctcaa ttatatcgat atcggtaaaa aagagggggc
    11761 cgatattctg accggtgggc gacgcaagga actggatggc gaacttaaag agggctatta
    11821 ccttgagcct accattctgt ttggtaagaa taatatgcgc gtctttcagg aggagatctt
    11881 tggcccggtg ctggcggtaa ccacctttaa aaccatggag aaggcgctgg aaatcgctaa
    11941 cgatacgcaa tatggcctgg gtgctggcgt ctggagccgc aacggcaatc tggcctataa
    12001 gatggggcgc ggcattcagg ccgggcgcgt atggaccaac tgctatcacg cctatccggc
    12061 acatgcggcg tttggcggct ataagcagtc gggcatcggg cgcgaaaccc ataagatgat
    12121 gctggaacac taccagcaaa ccaagtgcct gttggtgagt tattccgata agccgctggg
    12181 gctgttctga cgcaagaggt aatgcccgat ggcgctgcgt ttatcaggcc tacaagaatt
    12241 tatcgcaata tactgatatt gcaaatcttg taggccggat aaggcgcagc cgccatccgg
    12301 cacagtatta ccgctcgtta atccaaatcc gcatttcgcc ctcgccacgg ttggcccagc
    12361 taaaccacgg aatgaatgtt agcgtctgcg gctgacgcga tgacggcgcg ttatcgtagt
    12421 gccacaacgc ctgatgctgc gcatccgcgg cgctttgctt ctcgccttcg gcctgaatca
    12481 gcatcttatg cgcaaaaagc cctttgccct caaagacccg gaactcactc tctttcggta
    12541 gccacagatt atgcagttct tcgccgttat cggcctgctc aaggcaatag accagcggcc
    12601 cgcgctgaat agcgacctta ccggcgacgt gacgcgccag cggattgcca tacacgcggc
    12661 gaaccggcat cggcagcgtc aggcttatcg tatcgccctc ctgccaggtt cgacggatat
    12721 gcagataacc tttgcgaata tcctgctcca cttccagccc gttgagcgtc acttttgcct
    12781 cagggcacca gtccggcaga cgtagcgcca gcgtgtgacg taccggctgc acagaatcga
    12841 tggcgatctt cacctgctca tgccacgggt agttcccgct gattcgcagt ttgagcgcgc
    12901 cattttcaac cggtatttcc atgctgttac ccacgtacat attgatgtac agcgcatccg
    12961 cacgcggcgt gtagatgtag tgaccaatgg acgtgagtac gcgggcgata ttcggtgggc
    13021 agcaggcgca gccaaaccag cgctggcgga tgggtttaac gtgatcgtag atatggttga
    13081 attttaacga ttttggatgc acttccagcg ggttgacgta gaagaaatgc ttgccgtcga
    13141 gcgccatacc gccgaggacg gtgttgtaca gcgcgcgctc catcacgtcg gcgtactggc
    13201 tatcggcttc catttccagc atccggcggg cgaacatcat caggccgatt gaagcgcagc
    13261 tttccgcata gaccgaatca ttcggtaaat cgtaatcgct gctaaaggct tcgccgctgc
    13321 tttgtgaacc gatgcctccg gtgatataca gctgacgctg cgccatattt ttccacaggc
    13381 gcaggcagtc ctggcgtttg ccttcatcgt tgctcaggcg agcgagatgc gccacgccag
    13441 tcatcagata gacaaaacgt accgcgtggc cgattgccgt ctgctgctgc gaaattggca
    13501 gatgcgcctg gctgtaggct ttgtctttga ccatccacgc cgggccgtag gtatgccagt
    13561 aagaggtttg gccgcgtttt tcgtactctt cgtcgtagaa gtgcggttgg gcgccgcgct
    13621 gcccgataaa gtaacttgcc agcgtcatat agcgcggctg ctctgttacc tcatacagac
    13681 gcatcagcgc cagctcaatt tccgggtggc ccggataacc gtgcagctga ttttcgccag
    13741 ggccgaaagt gctgtcgata tgatcggcca gacgacaaac gacgtctagc agccgacgct
    13801 tgccggtggc ctgaaagaag gcgacgcccg cttcaatcag atgcccggcg caataaagct
    13861 catggcactc cgccaggttg ctccagcgtt cttgcggggc ttttgccgta aagtacgtat
    13921 tgagatagcc atcgtcacac tgcgcggcgg ccaccagttc aatcacctca tcggcggttt
    13981 tctcaagctc tgggtcgggt ttttggcaca gtgaccaggc aaccgcttcc agccatttcg
    14041 ccacgtcgct gtcctgaaag accatgccgt aaaagtcgcc cgtctgctgg cctgcggcaa
    14101 tgcggaaatt ttcaatggca tggctgggtt cagcctctgg aatacgatcg tttaacgcat
    14161 cccactggta aggaataacc acatcgcgaa ccagttgttg atactgtccg agtaacggat
    14221 cgctgaccgt cagtttatgc agatcgactt ccagtacgtt catttcgtgc tccttaaggc
    14281 tgtagaggtc atagatattc ctcgctgacg gggtatttta tggcagtaat ttttattttc
    14341 gcgttatgac ctgattcatt ttgcccagat agcggtgagc gacaaggcga taaaagagta
    14401 aaaaaagatg acgattccga ctcgtattta aaaatgtgag atggatcgag tgaaatgact
    14461 atttttagtt aataatcaaa aagtaatatg aaatacggtg ctgaatgagc gggaaataac
    14521 atattaatgc tcgaattatc cataacatta ccgattaaag tccaaaacgg cggattattt
    14581 atttctcgcg gcattgggcg tcatcctgcc aggcgtctgc aatcgtggga aattatattt
    14641 gtggaaaaag gctgcctgaa aattcaggaa gaatgtgttt tctgtgtcga agccggggaa
    14701 agcctgttgc tttggccgca tcgccgccat attggcgttg aggagtttcc cgccgatctt
    14761 aaattttact ggctccattt tgaggtcaaa gcgccggaca gcgacccgcg ctggctgacg
    14821 catctttccg tgccgcagca tacccaggtt gccgatccgc aggcgctgat tgcgcttttt
    14881 cgccagttta tgaacgagca ggaaaagcac cagcgcagtc cggcgctgga gttcatcgtg
    14941 ctgctgattt tgcagcagct caccgttgac gcccggcaga atgaaaacgc cgaggccgct
    15001 ggcgtgtcgc tggcctggaa agcgcagcag ctgattcgaa cgcactatca cctgccgctt
    15061 tccagcgcgg ttctggcgaa agaactgcat tgcaatgtgg attatctggg acgcgtttat
    15121 cggcgggtat ttcaccttac gctaacggaa gccatccacc gccagcgggt gcgcgaggcg
    15181 gaaaagttgc tgattagcga cgcgcgttcg ttaaaagagg tggcggagcg gtgcggtttt
    15241 aatgacgttg gttactttcg ccagatcttc cgcaagcaca ccggcctgac gcctaccgcc
    15301 tggaagcggc gctacagtaa ggaacacgtt aattcttgag tataatcttt ggccctctga
    15361 caacgcggtt gcaaactgaa tgcccgatgg cgctttgctt atcgggccta caagagttca
    15421 tcacaacgta ttgatattgc aaatcttgta ggtcggataa ggcgcagccg ccatccgaca
    15481 caggctgtga ctgccgatat tactgcccgt aataggcgtt cgcgccatgt ttacgcagat
    15541 agtgtttatc gagcaattcc ggctgcatat ccggtagctg cggggccagc tggcgcgaga
    15601 acagccccat ataggcgcac tcctcaagca ccacggcgtt gtggacggca tcggcggcat
    15661 ttttacccca ggcaaacggg ccgtgtgaat gaactaatac cgccgggatt tgcgccggat
    15721 cgagaccgcg ctcttcaaag gttttaataa tcacctcgcc ggtctgatac tcgtactcgc
    15781 cgttaatttc ctcaacggtc atcagccggg tacaggggat cgcgccatag aaatagtcgg
    15841 cgtgggtggt gccccaggcg ggcagatcga gcccggcctg cgaccagatc gtcgcatggc
    15901 gggaatgggt atgcacgatc ccaccgatct gcggatagcg gcgatagagc gccagatggg
    15961 tcgcggtatc ggacgacggt tttttgttgc cttcaacgac cttaccgctg gcgatctcta
    16021 ccaccaccat atcgtcggcg gtcatcacct catattcgac gccggaaggc ttaatgacca
    16081 tcagcttgcg cgtctcatcg accgcgctga cgttgcccca ggtaaaggtg accagcccgt
    16141 gcgccgggag ggccaggttg gccgccagca cctcggcttt cagttgctct aacatgtgaa
    16201 acctccttcc tgcatccgtg attcaatcca gcggcgggcc tggataattt ccagcaccgg
    16261 ctcgctggct ttctctgtcc acatctcaat cagaaatgaa ccgcgatagt tcagctcatg
    16321 cagcgttttg aagatgctga caaaatcaac gcatccttcg ccaaacggca cgtcgcggaa
    16381 ctggccgggg ttgtcaccgg tcaccggcag cgtgtctttc aggtggatcg cggcgatacg
    16441 gtcgataccc agcttcagct cggcggtcac gtcgttcccc caggcgctga ggttgccgac
    16501 gtctggataa acggtgaacc acggtgacga aagcatctcg tcccactttt tccacttgct
    16561 gatggagttc ataaacgcgg tatccatgat ctccaccgcc agcatcacct gcgccgctgc
    16621 ggcctgttcc accgcccacg ccagcccttc ggcgaaacgt tgctgggtgc cttcgtcgtg
    16681 ctcttcgtaa tagacgtcgt aacctgccaa ctggatggtg cggatcccca ggtcgcgcgc
    16741 caggcgaatg gctttggtca tgatttcacg cgcccgctgg cgtaccgctt cgtcgcggct
    16801 gccaaaaggg aagcgacgat gggcggagag gcacatcgac gggatggcga cgccgctttc
    16861 cagcatcgcg ttcaccagcg aagcgcgttg ggccgaggtc cactccaggc gtgagagacg
    16921 ttcgtcggtt tcatccaccg acatctcaac aaaatcaaaa ccgcagcttt ttgccagcac
    16981 cagccgctct ggccaactga gatctttcgc cagtgctttc tcgtaaatac ctaatggatg
    17041 attacgcatg cttttctccc caaatggcgt caatttgggc gtggaattcg gcggcgacct
    17101 gcgccggatg ggcggcacct gccagcgcac gtccggcgat aaatgcctta acgttaatgt
    17161 cgcggaacag cggcagatcc gctggggtaa tgccgccggt aatcgatagt tcaaggccga
    17221 tgtcggacaa cgccttcata cgcgccaggt ccgcttctcc ccactgctgc ccgctggcct
    17281 gcgcatcgtg tccgcggtgg taaatcgcct ggcgaacccc gacgcgatac cagtctcggg
    17341 cgtcgtccag cgtccagttg ccgaacagtt ccatttgaat ttcaccgccg caggattgcg
    17401 cgacggcatg gcctttctcg acggtcgcga gcggcgcggc gcagatgata gtcatccagt
    17461 tagcgccagc gctaaaagcc tgctgcgcca gggtttcacc ggcatcggcc actttccagt
    17521 cggcgacgat gattttttcc gggcactgcg ctcgcagggc tttcaccgcg ctaaggcctt
    17581 cggttaaaca aaggatggtt ccggcctcaa cgatatcgac atgatcctgt agcagggcga
    17641 catcgcgctg ggctgcttcc agactggtgt ggtcgagcgc cagttgcagt aatggtcggc
    17701 tcataatgcg tgctccttaa tacgggcgtg atagccctgt agtgcttcaa tcaaatcctg
    17761 gtattggcgg tatttgcgct ggtagagggc gtgcgcggtc atgtccggca gcagcgtgcg
    17821 taccgggtgc tgcaggtcgc gttgggcctc gtggaaatcg cgatatacgc cggtgccgac
    17881 gcgggctgcc agcgccgcgc cgaagcagcc ggtctcctcc acctgcggca gctcgatgcg
    17941 taacccgctg acgtccgaca gcatctgcat ccagacgtcg gagtgggccg gtccgccggt
    18001 aacgcgcagg gcgcaaacct cggtaaagcg ttcacgcatg cggttgaggt gggtcatatg
    18061 gctgaagacc acgccttcat agagcgcctg tagcaggtgc gcgcggttgt gcagcgcctg
    18121 catgccataa aagccgcagg tcatctccag cccggcattg ctgccgtaga gaaacgggag
    18181 aaaaaaaagg tcgctaccgg ctttcggcag gctggcaacc gcctggttga tctcgtcaaa
    18241 agagaggtag ccccactggg cggtgaacca ttcaaggttg ccggaagagg tcgggctggc
    18301 ttcgtgaacg atatactgcc cgtcattgac gtagcggcca tagacgtaag gatgggcctc
    18361 atggtcgcgc agaccgtgag cgatgccgct ggtgacggcc caggtcccca tcaccgcatt
    18421 gagcgttgat tcatcctcaa taccggcgca aagggcggtg gaaaccacgt caaacaggcc
    18481 gccgacgacg ggggtacccg ccgccagacc ggtgatagcg gccgcctgag cggtgatctc
    18541 cccgcatatt tcggctgaac ccaccacggg gggcagcgcg ctatcgattt cactgatgcc
    18601 cagccattcg gtcaggcgcg ggtcgtactg gcccgtcgcc atgttgtaga ggttggactc
    18661 ggagatattg ctctcctcac agcctttcac gccggttaag caccagcgca gatagtcatg
    18721 cgtcatcatg acgctgccta tctgcgcgta gcgctgcggc tcattctctt ttacccagcg
    18781 taaaagggag accggatgcc cggtccacag ggtttgccgg gtcagtgggt agagtttttg
    18841 cggaaccgct tctttttgcc agcgctggac aatttccatg gcgcgacgat cggaagagag
    18901 tatcgcttta cctaatggcc gatcgctttt atctaacagg aacaggcctt tcccttgggc
    18961 tgaaataccc agaccgcgga tttgtgagcc gctcaccccc gtgtgcgtca gcagtttgct
    19021 gatgaccgaa gcgcactgtt gccacagttc ggtcatatcg cgttcaaccc agcctggctg
    19081 cgggcttaaa gcgtgcagcg gcaggcgttg caccgctact tcccggcctg cgccatcgta
    19141 caacccggct tttagccaac tcccaccaca atctaacccc agccagtaat tgctcatgac
    19201 ttattgcacc tcgtccacgg ctttcaggag gtcggcgccc tgcgggttgt ctttcaggaa
    19261 catatcgcgc acctggctgc ccagcgcatc actgaaggct ttacggtcga tatcggtcag
    19321 gacttcaact ccggcttctt tcatgccatc gataattttt tgctgatctt cggcgaccag
    19381 tttgcgctgg tagtcccccg cttctttggc ggaactcagc agtgcctcct ggaactgcgg
    19441 gcttaaagcg tcgaatttgg ctttattgat caccagcagc agaggcgaat aggcgtgatg
    19501 agtgagggag aggtatttct gtacctcata gaatttcgct gaccacacga cgttgatagg
    19561 gtgttcctgg gcatcaatcg tacgggtttc gaggccggta tagacttcgg agaatggcat
    19621 cggaataggg ttcgcgccga agattttaaa ggccgcgata ttcattggac tgttgttagt
    19681 gcggattttt aagcctttca aatcgcccgg cgtttttacc ggcgcgcggg agttggtgac
    19741 gtcgcgccag ccgttttccc agtaggcgag gacttttaac ccttttgaat cgagtgattt
    19801 tttcagttca tcgccgactt taccgtcgag cgttttatgc gcatgcgagg tatcgcgaaa
    19861 caggaagggg acatcaagta agttgaatac aggggccagg ccggtgaaat tgttcgaacc
    19921 ggacatttcc atatcaatag ttccgccgcg caccccgctg atcattgcct gagcgttacc
    19981 taatgtgctg tcaggaaaga gttttagcgt taattcgccg ttggtttttt cttttaataa
    20041 ttcgttaaat tttttcgcgg caatatgttg ggagtcagtt tgcggtgttt cataaccaaa
    20101 acgtaaagat tgcgccgcca gagacgacac gctgaaaacc gtcagaccag ctatcaataa
    20161 t
//
LOCUS       DAJVSD010000059        20051 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.059, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000059 DAJVSD010000000
VERSION     DAJVSD010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 20051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20051
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.059"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..697
                     /locus_tag="OQP62_001762"
     CDS             <1..697
                     /locus_tag="OQP62_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4311 domain-containing protein"
                     /protein_id="HCS1721335.1"
                     /translation="FHAPTTQGMGAFRTLGELNSCEGDPASHFSFGLGFFFNAWASSV
                     AAGSFTQDVDHRIIPNWGAAALMIKNRNVGETLHDPKKMAIACAVIGMIVVTFLNLTA
                     SSVPEALQVTAVKVLVPAANLLVNIVMPVIFWLAAIDAGKKSGFWATVFGGAAQLIMG
                     NAVPGLVLGILIGKGVEESGWNHVTKVMMVAIVLLFVLSGFFRGFDMKMIESFNMTVP
                     NWLELIHNSLSGK"
     gene            709..1353
                     /locus_tag="OQP62_001763"
     CDS             709..1353
                     /locus_tag="OQP62_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4310 family protein"
                     /protein_id="HCS1721336.1"
                     /translation="MEENKGFWYADWSFPIFVGLLSSGVFAGTHMYYLYGIGAFNEVA
                     FVAMLKAGMDTGVYGAVAAFGASFLFARIIEGSLVGILDIGGAIQTGVGLGVPALLLG
                     AGFVFPVANFIASLITGLVIGLAIGYIIILARKFTINQSDSTYGADVMMGAGNTSGRF
                     LGPLIILSAMTASIPIGLGSLVGALLFYIWQKPITGGAILGAMILGSIFPVSIS"
     gene            1412..2545
                     /locus_tag="OQP62_001764"
     CDS             1412..2545
                     /locus_tag="OQP62_001764"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase/deacetylase family
                     metallohydrolase"
                     /protein_id="HCS1721337.1"
                     /translation="MFDLLLRHARLVDDTLTNIALQDGKIAALGDVDGPALKTIDLRG
                     ECYVSAGWIDSHVHCYPKSPIYHDEPDSVGIATGVTTVVDAGSTGADDIDDFYTLTRD
                     AATEVYALLNVSRVGLIAQNELANMANIDADAVRQAVKRHPDFIVGLKARMSSSVVGV
                     NGITPLERAKAMQQENGNLPLMVHIGNNPPDLDEIAERLTAGDIITHCYNGKPNRILR
                     PDGELRASVTRALARGVRLDVGHGTASLSFAVAKRAISLGILPHTISSDIYCRNRING
                     PVHSLANVMSKFLAIGMSLPQVIACVTANAADSLNLKTKGRLQPGLDADLTLFTLKRQ
                     PTVLVDAENDSLQAEELLTPLAAIRAGKGYMTEQGSAEHAFDF"
     gene            2529..3647
                     /locus_tag="OQP62_001765"
     CDS             2529..3647
                     /locus_tag="OQP62_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DgaE family pyridoxal phosphate-dependent
                     ammonia lyase"
                     /protein_id="HCS1721338.1"
                     /translation="MPSIFEKYQLKQVINASGRMTALGVSTPRPEVIDAAMAGMNQYF
                     EMKDLVNKTGEYIAKLLEVEGATVVSCASAGLAQSVAAVLVQDSDWLLENLHVTPIEN
                     NEIVLPKGHNVNFGAPVGTMVALGGGKLVEAGYANECSAAQLAAAITPRTAAILYIKS
                     HHCVQKSMLSVEQAAVVARTHNLPLIVDTAAEEDLQCYYRVGADLVIYSGAKAIEGPT
                     SGLVIGKTQYVEWVKRQSAGIGRAMKVGKEGIVGLTCAIELYLRAQKESGAEMVEKMA
                     PFIDTLNTFNGVSARVVWDSAGRDIARTEIKFDEAVTGIATGDLVDALKQGEYAIYFR
                     GYKANEGIIEADVRSVDRAQLAIVARRIGEVINQEKQA"
     gene            3644..4384
                     /locus_tag="OQP62_001766"
     CDS             3644..4384
                     /locus_tag="OQP62_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463308.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KDGP aldolase family protein"
                     /protein_id="HCS1721339.1"
                     /translation="MKLTPNFYRDRVCLNVLAGSKDNAREIYAAAEGHVLVGVLSKNY
                     PDVASAVADMREYAALIDNALSVGLGAGDPNQSAMVSEISRQVQPQHVNQVFTGVGGS
                     RALLGQNETVVNGLVSPTGTPGLVKISTGPLSSRAPDGIVPIETAIALLKDMGGSSVK
                     YFPMGGLTCRDEYKAVADACARHDFWLEPTGGIDLENFAEILHIALDAGVSKIIPHIY
                     SSIIDKVSGNTRADDVRQLLAIVRSRVG"
     gene            4401..6314
                     /locus_tag="OQP62_001767"
     CDS             4401..6314
                     /locus_tag="OQP62_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HCS1721340.1"
                     /translation="MRFPNQRLAQLFAMLQNETLPQDELAQRLSVSTRTVRADIAALN
                     MLLTPHGAQFTLSRGNGYQLKIDDPARYQSLQTQQSPTLARGPRTSQERIHYLLARFL
                     TSAFSLKLEDLADEWFVSRATLQNDMADVREHLLRYHLTLETRPRHGMKLFGGEMAIR
                     ACLTDLLWTLVQQEPSHPLIVSTTLNTEVSQRLQSLLPDIFSHCQIRLTDEGELFLRL
                     YCAVAVRRIREGYPLSECVAEEVDEKVRHAAHEIAELLQQLADKPLSEPEVSWLKVHI
                     AARQVQEIAPSAINADDEEALVHYILNFINTQYNYNLLNDKQLHADLLTHIKTMITRV
                     RYQIMIPNPLLENIKQHYPMAWDMTLAAISSWGKYTPYTISENEIGFLVLHIGVGLER
                     SYNIGYQRQPQVLLVCDAGNAMVRMIEAVLARKYPQIEIARTLTLRDYEARDSMVEDF
                     VISTARIGEKDKPVIMIAPFPTDYQLEQIGKLVLVDRTRPWMLDKYFDASHFRIVEGE
                     INQQTLFKTLCDQLHEEGFVDAAFLDSVIEREAIVSTLLGDGIALPHALGLLAKKTVV
                     YTVLAPQGIAWGDETAHVIFLLAISKSEYEEAMAIYDIFVTFLRERAMTRLCACQNFT
                     QFKTVAMECVSRF"
     gene            6392..6634
                     /locus_tag="OQP62_001768"
     CDS             6392..6634
                     /locus_tag="OQP62_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HCS1721341.1"
                     /translation="MATLNVRLDDKLKNEAYAVLEKLNITPTEAVRLLFQYVAETGRM
                     PVKTVTLSDSEDALIQTVRERLSSPQKGIKVSLDDL"
     gene            6624..6908
                     /locus_tag="OQP62_001769"
     CDS             6624..6908
                     /locus_tag="OQP62_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HCS1721342.1"
                     /translation="MTYELEFDPRALKEWHKLGDTVKAQLKKKLADVLLNPRIDSARL
                     NGLPDCYKIKLKSSGYRLVYQVRDDVVIVFVVAVGKREHSAVYHDANKRL"
     gene            complement(6912..7376)
                     /gene="nrdG"
                     /locus_tag="OQP62_001770"
     CDS             complement(6912..7376)
                     /gene="nrdG"
                     /locus_tag="OQP62_001770"
                     /EC_number="1.97.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate
                     reductase-activating protein"
                     /protein_id="HCS1721343.1"
                     /translation="MRYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRLNSG
                     QPFTKEMEDKIIADLNDTRIHRQGISLSGGDPLHPQNVPDILALVQRIHAECPGKDIW
                     VWTGYRLDELNAAQMQVVNLINVLVDGKFVQDLKDPALIWRGSSNQVVHHLR"
     gene            complement(7497..9635)
                     /gene="nrdD"
                     /locus_tag="OQP62_001771"
     CDS             complement(7497..9635)
                     /gene="nrdD"
                     /locus_tag="OQP62_001771"
                     /EC_number="1.17.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HCS1721344.1"
                     /translation="MTPHVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAE
                     VVSSQMNARSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQEI
                     RGLVEQTNSALLNENANKDSKVIPTQRDLLAGIVAKHYARQHLLPRDVVQAHERGDIH
                     YHDLDYSPFFPMFNCMLIDLKGMLTQGFKMGNAEIEPPKSISTATAVTAQIIAQVASH
                     IYGGTTINRIDEVLAPFVTESYNKHRKTADEWQIPDAEGYARSRTEKECYDAFQSLEY
                     EVNTLHTANGQTPFVTFGFGLGTSWESRLIQASILRNRIAGLGKNRKTAVFPKLVFAI
                     RDGLNHKFGDPNYDIKQLALECASKRMYPDILNYDQVVKVTGSFKTPMGCRSFLGVWE
                     NENGEQIHDGRNNLGVISLNLPRIALEAKGDETAFWKLLDERLALARKALMTRIARLE
                     GVKARVAPILYMEGACGVRLKADDDVSEIFKNGRASISLGYIGIHETINALFGGEHLY
                     DSEQLRAKGIAIVERLRQAVDQWKDETGYGFSLYSTPSENLCDRFCRLDTAEFGVVPG
                     VTDKGYYTNSFHLDVEKKVNPYDKISFEAPYPPLANGGFICYGEYPNIQHNLKALEDV
                     WDYSYQHVPYYGTNTPIDECYECGFTGEFECTSKGFTCPKCGNHDAARVSVTRRVCGY
                     LGSPDARPFNAGKQEEVKRRVKHLGNGQIG"
     gene            complement(10044..11696)
                     /gene="treC"
                     /locus_tag="OQP62_001772"
     CDS             complement(10044..11696)
                     /gene="treC"
                     /locus_tag="OQP62_001772"
                     /EC_number="3.2.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-phosphotrehalase"
                     /protein_id="HCS1721345.1"
                     /translation="MTIPLWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQRL
                     GVDAIWLTPFYISPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKARGIRIILDMVF
                     NHTSTQHAWFREALNKESPYRQFYIWRDGTPDVCPNNWQSKFGGSAWRWHSQSEQYYL
                     HLFAPEQADLNWENPAVRAELKKVCEFWADRGVDGLRLDVVNLIAKDQDFPDDPTGDG
                     RRFYTDGPRTHTFLREMNRDVFTPRNLMTVGEMSSTTLENCQQYAALSGDELSMTFNF
                     HHLKVDYPNGEKWTLAKPDYVALKALFRQWQQGMHNVAWNALFWCNHDQPRIVSRFGD
                     EGEYRVPAAKMLAMALHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESHNMFAALRA
                     AGRDPDELLAILASKSRDNSRTPMQWDNGKNAGFTQGEPWISLCDNYTEVNVAAALRD
                     ENSVFYTYQKLIALRKTQPVMIWGDYQDLLPGSPSVWCYRRQWQGQTLLVVANLSDQC
                     QEWHPPHIKGQWQALLHNYGEVASQPAAMTLRPFEAIWWLQR"
     gene            complement(11746..13164)
                     /gene="treB"
                     /locus_tag="OQP62_001773"
     CDS             complement(11746..13164)
                     /gene="treB"
                     /locus_tag="OQP62_001773"
                     /EC_number="2.7.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS trehalose transporter subunit IIBC"
                     /protein_id="HCS1721346.1"
                     /translation="MSKVKQADIDRLIDLVGGRDNIATVSHCITRLRFVLHQPANARP
                     KEIEQLPMVKGCFTNAGQFQVVIGTEVGDYYNALLETTGKAYADKEQAKKAARQNMKW
                     HEQLISHFAEIFFPLLPALISGGLILGFRNVIGDVPMSHGQTLAQMHPALKTLYDFLW
                     LIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQTPDVWNFG
                     VFSIEKIGYQAQVIPALLAGLALGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHAF
                     IGPFGRMIGDGVAFAVRYLMTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDMQMVQS
                     MGGTPVWPLIALSNIAQASAVVGIIISSRKHNEREISVPAAISAYLGVAEPAMYSINI
                     KYRFPMLCAMIGSGLAGLLCGLNGVMANGIGVGGLPGILSIQPTYWQVFAMAMVIAIV
                     IPVILTTFIYQRKHRQGTLQIV"
     gene            complement(13302..14249)
                     /gene="treR"
                     /locus_tag="OQP62_001774"
     CDS             complement(13302..14249)
                     /gene="treR"
                     /locus_tag="OQP62_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator TreR"
                     /protein_id="HCS1721347.1"
                     /translation="MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSKRTRERVEAVMN
                     QHGFSPSRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQF
                     SPMLVMEHLGMLRRRNIDGVVLFGFTGITEELIAPWKASLVLLARDAQGFASVCYDDE
                     GAIHILMQRLYEQGHRNISFLGVPHSDITTGKRRHDAYLAFCKKHKLHPVAALPGLAM
                     KQGYEHTASVIMPDTTALVCATDTLALGASKYLQEQRIETLQLASIGNTPLIKFLHPE
                     IVTVDPGYAEAGRQAALQLIEQINGRCDPRRIVIPSTLA"
     gene            14394..14492
                     /gene="mgtL"
                     /locus_tag="OQP62_001775"
     CDS             14394..14492
                     /gene="mgtL"
                     /locus_tag="OQP62_001775"
                     /inference="COORDINATES: protein motif:HMM:NF028369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mgtA regulatory leader peptide MgtL"
                     /protein_id="HCS1721348.1"
                     /translation="MRIIRGANYLLTGGDMDPEPTPLPRWRIFLFR"
     gene            14633..17341
                     /gene="mgtA"
                     /locus_tag="OQP62_001776"
     CDS             14633..17341
                     /gene="mgtA"
                     /locus_tag="OQP62_001776"
                     /EC_number="7.2.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium-translocating P-type ATPase"
                     /protein_id="HCS1721349.1"
                     /translation="MLKTITRQLFARLNRHLPYRLVHRDPLPGAQTAVNATIPPSLSE
                     RCLKIAAMEQETLWRVFDTHPEGLNAAEVTRAREKHGENRLPAQKPSPWWVHLWVCYR
                     NPFNILLTILGGISYATEDLFAAGVIALMVGISTLLNFVQEARSTKAADALKAMVSNT
                     ATVLRVINENGENAWLELPIDQLVPGDIIKLAAGDMIPADLRIIQARDLFVAQASLTG
                     ESLPVEKVATTREPRQNNPLECDTLCFMGTNVVSGTAQAVVMATGADTWFGQLAGRVS
                     EQDNEQNAFQKGISRVSMLLIRFMLVMAPVVLIINGYTKGDWWEAALFALSVAVGLTP
                     EMLPMIVTSTLARGAVKLSKQKVIVKHLDAIQNFGAMDILCTDKTGTLTQDKIMLENH
                     TDISGKPSEHVLHCAWLNSHYQTGLKNLLDTAVLEGVDETAARQLSGRWQKIDEIPFD
                     FERRRMSVVVAEDSNVHQLVCKGALQEILNVCTQVRHNGDIVPLDDNMLRRVKRVTDT
                     LNRQGLRVVAVATKYLPAREGDYQRIDESDLILEGYIAFLDPPKETTAPALKALKASG
                     ITVKILTGDSELVAAKVCHEVGLDAGDVVIGSDIEGLSDDALAALAARTTLFARLTPM
                     HKERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVDGAVDIAREAADIILLEKSL
                     MVLEEGVIEGRRTFSNMLKYIKMTASSNFGNVFSVLVASAFLPFLPMLPLHLLIQNLL
                     YDVSQVAIPFDNVDEEQIQKPQRWNPADLGRFMVFFGPISSIFDILTFCLMWWVFHAN
                     TPETQTLFQSGWFVVGLLSQTLIVHMIRTRRLPFIQSRAAWPLMAMTLLVMVVGVSLP
                     FSPLASYLQLQALPLSYFPWLIAILAGYMTLTQLVKGFYSRRYGWQ"
     gene            complement(17457..17903)
                     /locus_tag="OQP62_001777"
     CDS             complement(17457..17903)
                     /locus_tag="OQP62_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1721350.1"
                     /translation="MVRARFTEEQIADFLQQSKNGVPNKALCEEYGFSNSTLRRWQEK
                     HAESIRQELKQIESTAKIVFLCFIIAAILLTLMFPKPTAALAIPPYLVYCISYIRRFR
                     RISAKHIQRWDISSSRSGSGAENVFYKLSWTFLFFMPAYSILQLLE"
     gene            complement(17978..18364)
                     /gene="ridA"
                     /locus_tag="OQP62_001778"
     CDS             complement(17978..18364)
                     /gene="ridA"
                     /locus_tag="OQP62_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminobutanoate/2-iminopropanoate deaminase"
                     /protein_id="HCS1721351.1"
                     /translation="MSKTIATENAPAAIGPYVQGVDLGSMVITSGQIPVDPKTGAVAE
                     DVSAQARQSLENVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATF
                     PARSCVEVARLPKDVKIEIEAIAVRR"
     gene            complement(18441..18902)
                     /gene="pyrI"
                     /locus_tag="OQP62_001779"
     CDS             complement(18441..18902)
                     /gene="pyrI"
                     /locus_tag="OQP62_001779"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000148566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HCS1721352.1"
                     /translation="MTHDNKLQVEAIKCGTVIDHIPAQVGFKLLSLFKLTETDQRITI
                     GLNLPSGEMGRKDLIKIENTFLTDEQVNQLALYAPQATVNRIDNYDVVGKSRPSLPER
                     INNVLVCPNSNCISHAEPVSSSFAVKKRANDIALKCKYCEKEFSHNVVLAN"
     gene            complement(18915..19850)
                     /gene="pyrB"
                     /locus_tag="OQP62_001780"
     CDS             complement(18915..19850)
                     /gene="pyrB"
                     /locus_tag="OQP62_001780"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HCS1721353.1"
                     /translation="MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKV
                     IASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDA
                     IVMRHPQEGAARLATEFSGQVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHIAM
                     VGDLKYGRTVHSLTQALAKFSGNRFYFIAPDALAMPQYILDMLDEKGMAWSLHGSIEE
                     VMADVDILYMTRVQKERLDPSEYANVKAQFVLRASDLNGARENMKVLHPLPRIDEITT
                     DVDKTPHAWYFQQAGNGIFARQALLALVLNSELSL"
     gene            complement(19886..19987)
                     /gene="pyrL"
                     /locus_tag="OQP62_001781"
     CDS             complement(19886..19987)
                     /gene="pyrL"
                     /locus_tag="OQP62_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyr operon leader peptide"
                     /protein_id="HCS1721354.1"
                     /translation="MVQCVRHSVLPRLKKDAGLPFFFPLKTNTKPLN"
BASE COUNT         4438 a         5192 c         5698 g         4723 t
ORIGIN      
        1 gtttcacgcg ccaaccacgc aggggatggg cgcgttccgt acgttgggcg aactcaactc
       61 ttgtgaaggc gacccggcat ctcacttctc ctttggactg ggtttcttct ttaacgcctg
      121 ggcgtcgtct gtggcggccg gatcgttcac ccaggatgtc gatcaccgca tcatccctaa
      181 ctggggcgcg gcggcgctaa tgatcaaaaa ccgtaacgtc ggcgagacgc tgcacgaccc
      241 gaaaaaaatg gcgatcgcct gcgccgtcat cggcatgatc gtcgtgacgt tccttaacct
      301 gaccgcctca tccgtgccag aagcgctaca ggtgacggcg gttaaggtgc tggtaccggc
      361 ggcaaacctg ctggtcaaca tcgtcatgcc tgtgattttc tggttagcgg cgatcgacgc
      421 tggtaaaaaa tcgggtttct gggccaccgt tttcggcggc gcggcgcagc tcatcatggg
      481 gaacgccgta ccggggctgg tgctgggtat tttgatcggc aaaggcgtag aagagagcgg
      541 ctggaaccat gtcaccaaag tgatgatggt tgccatcgtt ttgctgtttg tgttgagcgg
      601 tttcttccgc ggcttcgaca tgaaaatgat cgagtctttc aacatgacgg taccgaactg
      661 gcttgaactg atccacaact cgctcagcgg caaataacgg agaccacaat ggaagagaat
      721 aaaggttttt ggtatgccga ctggtcgttc ccgatctttg ttggcctgct ctcctccggc
      781 gttttcgccg ggacgcatat gtactatctg tacggtatcg gcgcatttaa cgaagtcgct
      841 tttgtggcga tgttgaaagc ggggatggat accggcgtct acggcgcggt cgccgctttc
      901 ggcgccagct ttttatttgc ccgcattatc gaaggttcgc tggtcgggat tctggatatc
      961 ggcggggcaa ttcagactgg cgtgggctta ggggttccgg cgttactgct gggggctggc
     1021 tttgtcttcc cggtggcgaa ctttatcgct tcgctgataa ccggtctggt gattggcctg
     1081 gcgattggct acatcattat tctggcgcgt aagttcacta ttaatcagag cgactccacg
     1141 tacggggcgg acgtcatgat gggggccggt aacacttcag gccgttttct ggggccgttg
     1201 attatcctca gcgccatgac ggcatcgatt cctattggtc tgggctctct ggtgggcgcg
     1261 ctgctgtttt atatctggca gaagccgatt accggcggcg cgattttagg cgcgatgatc
     1321 ctcggttcca tcttcccggt ttcgattagc taactgttga tttgtaggtc ggataaggcg
     1381 gttgcgccgc catccggcaa aggagagaac gatgtttgat ttactcctgc gccatgcgcg
     1441 tctggtcgat gacacgctga ctaatattgc ccttcaggat ggcaaaatcg cggcgttggg
     1501 tgacgttgat ggtccggcgc tgaaaaccat tgacctgcgc ggcgaatgtt acgttagcgc
     1561 gggttggatt gattctcacg ttcactgcta cccgaaatcg ccgatttacc acgacgaacc
     1621 ggacagcgtg ggtattgcca ctggcgttac cacagtggtg gatgcaggca gcacaggcgc
     1681 tgatgatatt gacgattttt acacgctgac tcgtgacgcg gccaccgagg tttatgcgct
     1741 gctgaatgtt tcacgcgttg ggcttattgc ccaaaacgag ctggctaaca tggccaatat
     1801 tgacgctgat gcggttcggc aggcggtaaa acgccatccg gattttatcg tcggcctcaa
     1861 ggcgcggatg agcagcagcg tggtaggcgt taacggcatc acgccgctgg aacgcgctaa
     1921 agccatgcag caagaaaacg gcaacctgcc gctgatggta catattggca ataacccgcc
     1981 ggatctggac gaaatagcgg agcgtctgac ggcgggcgat atcattaccc actgttacaa
     2041 cggtaagccg aaccgtattc ttcggcctga cggcgagctg cgcgcctcag tgacacgagc
     2101 gctggcgcgc ggcgtgcgtc tggacgtcgg gcatggtacc gccagcctga gctttgcggt
     2161 ggctaaacgc gctattagcc tggggatttt accgcatacc atcagttccg atatctactg
     2221 ccgtaaccgc atcaacggcc cggtacattc gctggctaat gtgatgtcga aattcctcgc
     2281 catcggcatg tcgctgccgc aggtcattgc gtgcgtgacg gccaatgccg ccgatagcct
     2341 gaatctgaaa accaaaggac gtcttcagcc aggtctggat gccgacctga ccctctttac
     2401 gcttaaacgc cagcccaccg tgttggtaga cgcggaaaac gacagcttac aggctgaaga
     2461 attgctgacg ccgcttgccg cgatacgcgc aggcaagggc tatatgaccg aacaagggag
     2521 cgcggaacat gccttcgatt tttgagaagt atcaattaaa acaggtgatt aacgcctccg
     2581 gacgtatgac ggcgctcggc gtctccacac cgcgcccgga agtgatagac gcggcgatgg
     2641 ccggaatgaa tcagtatttc gagatgaaag atctggtgaa taaaaccggt gagtacattg
     2701 cgaaattgct ggaagtggaa ggggcgacgg tagtctcctg cgccagtgcg ggccttgccc
     2761 agtcggttgc cgcggtactg gttcaggaca gcgactggct gctggaaaac ctgcacgtta
     2821 caccgattga aaataacgaa atcgtcctgc caaagggcca caacgtcaac tttggcgcgc
     2881 cggtgggaac gatggtggcg ctgggcggcg gcaaactggt ggaagccggt tacgccaacg
     2941 aatgttccgc cgcccagttg gcggcggcca ttacgccgcg cacggcggct attctctata
     3001 tcaaatctca ccactgcgta cagaaaagta tgctcagcgt ggagcaggct gcggtggtgg
     3061 cgcgcacgca taatctgccg ctgattgtgg acacggcggc ggaagaagat ttgcagtgct
     3121 actaccgcgt gggcgcagat ctcgttatct atagcggcgc aaaagcgatt gaagggccga
     3181 ccagcgggct ggtgattggc aaaacacagt atgttgagtg ggtaaaacgt cagtcagcgg
     3241 gcattggccg ggcgatgaag gtcggcaaag agggaattgt tggcctgacc tgcgccattg
     3301 aattgtacct gcgggcgcaa aaagagagcg gcgcggagat ggtagaaaaa atggcgccct
     3361 ttatcgacac gttgaacacg tttaacggcg tcagcgcccg cgtggtgtgg gacagcgccg
     3421 gacgcgatat cgcgcgcacg gaaattaagt ttgatgaagc cgttaccggc atcgccacag
     3481 gcgacctggt cgacgcgctg aagcaagggg aatacgcgat ttactttcgc ggatacaaag
     3541 ccaacgaagg gattattgaa gcggatgtcc gcagcgtcga tcgcgcgcag ttagcgattg
     3601 tggcgcgtcg tattggcgag gtgattaatc aggagaaaca agcatgaaac tgacccctaa
     3661 cttttaccgc gatcgcgttt gcctgaacgt actggccggt tcgaaagata acgcccggga
     3721 aatctacgcg gcggcggaag gtcatgtgct ggttggcgtg ctctccaaaa actatccgga
     3781 tgtggcaagc gcagtcgcgg atatgcgtga atatgcggcg cttatcgaca atgcgctctc
     3841 cgtcggattg ggggcaggcg atcctaacca gtcggcgatg gtgagcgaaa tctcgcgtca
     3901 ggtacagccg cagcatgtca accaggtgtt taccggcgta gggggcagcc gggcgctgct
     3961 ggggcaaaac gagacggtgg tgaacggtct tgtctcgccg accggcacgc cggggctggt
     4021 gaaaatttcc accggcccgc taagcagccg cgcgccggac ggcatcgtac ccatagaaac
     4081 ggcgattgcg ctactcaaag acatgggcgg cagctctgtt aaatactttc cgatgggagg
     4141 actcacctgt cgcgacgagt ataaagcggt ggctgacgcc tgcgcccgcc atgatttctg
     4201 gctggaaccg acgggcggta tcgatctgga aaacttcgcc gagattctgc acatcgccct
     4261 tgatgcaggt gtaagcaaaa tcattcctca catttatagt tcgattattg ataaggtgag
     4321 cggcaacacc cgtgcggacg atgtgcgtca gttactcgct atcgtccggt cgcgtgtcgg
     4381 ctaatcatga ggagagagac gtgcgattcc ccaaccaacg tttagcgcag ctatttgcga
     4441 tgctgcaaaa cgagacgctg ccgcaggacg agctggcgca gcggttgtcg gtctccacgc
     4501 gtaccgttcg ggcggatatc gccgcgctga acatgttgct gacgccgcat ggcgcgcaat
     4561 ttactctcag tcgcggcaac gggtatcaac tcaaaattga tgatccggca cgttatcaat
     4621 ccctgcaaac gcagcaatct cccacgctgg cgcgcggtcc gcgcaccagc caggagcgga
     4681 tccactattt gctggcgcgt tttttaacct ccgccttctc gctgaagctg gaggatttag
     4741 cagatgaatg gtttgtcagc cgtgcgacgt tgcagaacga tatggcggac gtgcgcgagc
     4801 atttgctgcg ttatcatctg acgctggaaa cgcgtccgcg tcatggcatg aaattgtttg
     4861 gcggagagat ggcgattcgc gcctgtctga ccgacctttt atggacgctg gtgcagcagg
     4921 agccctccca tccgttaatt gttagtacca cgctgaacac cgaggtgtct caacggctgc
     4981 agtctctttt gccggatatt ttctctcatt gtcaaatccg cctgaccgat gagggcgagc
     5041 tgtttctgcg tttatactgc gcggtggcgg tacggcgtat tcgcgagggg tatccgttat
     5101 cggaatgcgt ggcagaggag gtcgatgaaa aggtgcgcca tgcggcgcat gagattgcgg
     5161 agctactaca acagctggct gacaagccgc tgtcggagcc ggaagtaagc tggctgaagg
     5221 tgcatattgc cgcccgccag gtacaggaga ttgcccccag cgccattaat gccgatgatg
     5281 aagaggcgct ggtgcactat atcctcaatt ttattaatac ccagtacaac tataacctgt
     5341 tgaatgataa acagcttcac gcggacttgc tgacccacat caaaacgatg atcacccgcg
     5401 tgcgctacca gatcatgatc cccaacccac tactggaaaa tattaagcag cactatccga
     5461 tggcgtggga tatgacgttg gcggcgatat cgagttgggg aaaatacacg ccgtatacca
     5521 ttagcgaaaa cgaaatcggt tttctggtgc tgcatattgg cgttgggctg gaacgtagtt
     5581 acaacattgg ctaccagcgg cagccgcagg tactgctggt gtgcgatgct ggtaatgcga
     5641 tggtgcggat gattgaagcg gtactggcgc ggaaataccc gcagattgag attgcccgca
     5701 ctctgacgct acgcgactat gaggcgcggg acagtatggt ggaggatttt gtgatttcca
     5761 cagcgcggat cggcgaaaaa gataagccgg tcatcatgat cgcgcccttt cctaccgact
     5821 atcaattgga gcagatcggt aagctggtgc tggtggacag aacccgtccg tggatgctgg
     5881 ataaatattt cgatgcctcg cattttcgca tcgtggaggg ggaaataaat caacagacgc
     5941 tgtttaaaac gctgtgcgat cagttgcacg aggaaggctt tgttgatgcg gcgtttctcg
     6001 attcggttat tgaacgtgaa gctatcgtca gtacgttatt aggcgacggg attgccttgc
     6061 cacacgcgct ggggctgctg gcgaagaaaa cggtggttta tacggtgctc gcgccgcagg
     6121 ggattgcctg gggtgacgaa acggcgcacg ttattttttt actcgccatc agcaaaagtg
     6181 aatatgaaga ggcgatggcc atctacgata ttttcgtcac tttcctgcgc gaacgcgcca
     6241 tgacgcgcct ctgcgcatgt cagaatttta cgcaatttaa aacggtcgca atggagtgtg
     6301 tgagtcgctt ttgagaggcg ttatccagaa ttcgatgtaa tgcgaatgta atgctaaact
     6361 gcattacaca ttcgattctc ctggaggcat aatggccacg ctgaacgtcc gtctggatga
     6421 caaactcaaa aatgaggctt atgccgtgct ggaaaaactg aacattactc caacggaagc
     6481 cgtgcgatta ctgttccagt acgtcgcgga aacggggcgc atgccagtga aaaccgtcac
     6541 tcttagcgac agtgaagatg cactgattca gacagttcgg gagaggctgt ctagtccgca
     6601 aaagggaatc aaggttagtc tggatgactt atgaactgga attcgacccg agggccttaa
     6661 aagagtggca taagctgggc gatacggtga aggctcagct taagaaaaag ttggctgatg
     6721 tgctattgaa ccccagaatc gactctgccc gtttaaacgg tcttcctgac tgctataaaa
     6781 ttaagcttaa atcgtccggt tatcgtctgg tgtaccaggt tcgggatgac gttgtgattg
     6841 tgtttgttgt tgcggtcggc aagcgagaac attcagccgt ctatcacgat gcaaacaaac
     6901 ggctttagcg atcaacgcaa atgatgcact acttggttgc tgctaccgcg ccagataagc
     6961 gccgggtctt tcagatcctg cacaaatttg ccatcgacca gcacgttgat gagattgacc
     7021 acctgcatct gtgcggcgtt gagttcatcg agcctgtagc cggtccacac ccagatatct
     7081 ttccccgggc actccgcgtg gatgcgttgt accagtgcca ggatatccgg tacgttttgc
     7141 ggatgcagcg gatcgccgcc cgacagcgag atcccctgac ggtgaatgcg cgtgtcgttc
     7201 agatcggcaa tgatcttatc ttccatctct ttggtaaacg gctggccgga attgagccgc
     7261 caggtgcttt tgttatagca gccagggcat tcatgcacgc accctgacac aaacagggtg
     7321 cagcgggtac cggggccgtt aacgatgtcg acgggatagt attgatggta gcgcatagcg
     7381 ggtgtccaga aagcatgtag gccggataag gtgcttgcac cgcatccggc aacattgtga
     7441 tgcctgatga cgacgcgatt gcgtcttatc aggcctacgg tctttgcaaa cggaaattaa
     7501 cctatctgcc cgttgcctaa atgcttcacg cggcgcttca cttcttcctg cttaccggcg
     7561 ttaaacggac gcgcgtccgg gctgcctaaa taaccgcaca cgcgacgggt aaccgagacg
     7621 cgcgcggcgt cgtggttgcc gcatttcggg caggtgaaac ctttactggt acattcgaac
     7681 tcgccggtaa agccgcactc gtagcattca tcgatcggcg tgttggtgcc gtaatacggt
     7741 acatgctgat agctgtaatc ccagacatct tccagcgctt tcaggttgtg ctgaatgttc
     7801 gggtattcgc cgtagcaaat gaaacccccg ttcgccagcg gcggatacgg cgcttcgaaa
     7861 ctgattttgt cgtacgggtt gaccttcttc tccacgtcga ggtggaagct gttggtgtag
     7921 taacctttat cggttacgcc cggcaccacg ccgaactcgg cggtatccag acggcagaag
     7981 cggtcacaga ggttttcact tggcgtgctg tacagactaa agccgtagcc ggtctcgtct
     8041 ttccactgat ccacggcctg gcgcagacgc tccacaatcg cgatgccttt agcgcgaagt
     8101 tgctcgctgt cgtacaggtg ttcgccgccg aacagcgcgt taatggtttc atggatacca
     8161 atgtagccca gagagatgga cgcacgacca tttttaaaga tttcagacac gtcgtcgtcc
     8221 gctttcagcc gcacgccgca ggcgccttcc atatacagga taggcgcgac acgggctttc
     8281 acgccttcaa ggcgggcgat acgggtcatc agcgccttcc gcgccagcgc cagacgttca
     8341 tccagcagtt tccagaatgc ggtttcgtcg ccttttgctt ccagcgcgat gcgcggcagg
     8401 ttaaggctaa tcacgcccaa gttgttacgc ccgtcgtgga tctgctcgcc gttttcgttc
     8461 tcccacacgc cgaggaaact gcggcagccc attggcgttt tgaacgaacc ggtgactttg
     8521 accacctgat cgtagttgag aatgtccgga tacatgcgct tgctcgcgca ctccagcgcc
     8581 agttgtttaa tgtcgtagtt cggatcgcca aacttgtggt tcaaaccatc gcggatagcg
     8641 aagaccagtt ttgggaacac ggcggttttg cgatttttac ccagaccggc gatacggtta
     8701 cgcaaaatag acgcctggat cagacgcgac tcccaactgg tgccgaggcc aaaaccaaag
     8761 gtcacgaaag gcgtctggcc gttagcggtg tgcagcgtgt taacttcgta ttccagcgac
     8821 tggaaggcgt cgtagcactc tttttcggtg cgagaacgcg catacccttc ggcatccggg
     8881 atctgccact catcggcggt tttgcggtgc ttgttatagc tttcggtgac aaacggcgcc
     8941 agcacttcgt cgatacggtt aatggtggtg ccgccataaa tatggctggc gacctgcgcg
     9001 ataatctgcg cggtaacggc agtggcggta gagatagatt ttggcggttc gatctcggcg
     9061 ttacccatct taaagccctg ggtcaacatg cctttcaggt cgatcaacat acagttgaac
     9121 atcgggaaga acggcgaata gtcgagatcg tgatagtgga tatcgccgcg ctcatgcgct
     9181 tgtactacgt cacgcggcaa caggtgctgg cgggcatagt gtttggcgac aatcccggcc
     9241 agcaaatcgc gctgggtggg aatgacttta ctgtctttgt tggcgttttc attgagcaac
     9301 gcggagttag tttgctctac caggccgcga atttcctggt tcagacgacc acgcttttca
     9361 cgctgaatgt cacgatcgtg acggtattcg atgtaggcgc gggcaagctg tttgtacggg
     9421 ccggacatca gttggttttc aaccgcagtt tggatctcgt taatatccac ctgactgcgt
     9481 gcgttcattt ggctgctaac gacttctgcg acggtggcac agtaatctgc gtcatcgact
     9541 cccgctgctt tagctgcacg tagaatggct tccttaatgc gctctgattt gaatggcact
     9601 ttacagccat ctcgtttcat cacatgcggt gtcatgatca ctccatattt gtaagaacag
     9661 gttatccaca gaggccgggg aagccataac aggtttattc atctcttttc caatgacttc
     9721 ccgcaatcct gacccaggtt atccacaatt caccttgtgt cgagtgaaca ggtgttgtag
     9781 caattgtagt caattaatac aacatattgg gtcggcgtgc attttaaagt ctatatgtag
     9841 tgatttgcat caaggatgtt tgcaatttta ttgatgtaga acaaggtaaa aatcagagcg
     9901 tacagatggc gggcgctgta gcgtttgtaa aagatagcaa gaaaaatctg attaattatt
     9961 caacaaaaac agacagtaac ctggagcaac gccacagccc gtgtcaatag gtttgtggcg
    10021 tttatccgta taaggacgtc gcgttagcgt tgtaaccacc agatggcttc aaatgggcgg
    10081 agcgtcatcg cggctggctg gctggcgacc tcgccataat tatgcagtag cgcctgccac
    10141 tgtcctttga tatgcggtgg atgccactcc tgacactggt cgctcagatt ggcgacaacc
    10201 agcagggttt gcccctgcca ctggcgacga taacaccata ctgatgggct acccgggagg
    10261 agatcctgat aatcgcccca gatcattaca ggctgggttt tacgtagcgc aatcagcttt
    10321 tgataggtgt aaaacaccga gttttcatcg cgtaatgccg ccgcgacatt aacctccgta
    10381 tagttatcgc acaggcttat ccacggctcg ccctgggtga aaccggcgtt tttaccgttg
    10441 tcccactgca tcggcgtgcg gctgttgtcg cgggatttac tggccaggat agccagtagt
    10501 tcgtcggggt cgcgtccggc ggcgcgtagc gcggcaaaca tgttatggct ttccacgtcg
    10561 cgataatcgg tgatgcgggt aaagtgtggg ttggtcatgc cgatttcttc gccctgatag
    10621 atataaggcg tcccttgcat accgtgcagc gccatcgcca gcattttcgc ggctggaacc
    10681 cggtattcac cctcgtcgcc aaagcgggaa acgatgcgcg gctgatcgtg attacaccag
    10741 aataacgcgt tccaggcgac gttatgcatc ccctgttgcc attggcggaa caacgctttc
    10801 agcgccacat aatcaggttt tgccagcgtc cacttttcgc cattggggta atccaccttc
    10861 agatgatgaa aattgaaggt catcgagagt tcgtcgccgc taagcgcggc atattgctgg
    10921 cagttttcca gcgtggtaga ggacatttcg cctaccgtca tcagattacg cggcgtaaaa
    10981 acgtcacggt tcatttcgcg taaaaacgta tgcgtgcgcg gtccgtcggt ataaaagcgg
    11041 cgtccgtcgc ccgtcggatc gtcaggaaaa tcctgatctt tggcgatcag gttcaccacg
    11101 tccagacgca ggccatccac gccgcgatcg gcccagaatt cgcagacctt tttcagctcg
    11161 gcgcgcacgg cggggttttc ccagttcagg tcggcctgtt caggcgcgaa aaggtgtaaa
    11221 taatattgtt cgctctggct atgccagcgc caggcgctgc cgccaaattt ggattgccag
    11281 ttattcgggc agacatccgg cgtgccgtcg cgccagatgt aaaactgacg gtatgggctc
    11341 tctttgttca gcgcttcgcg aaaccaggcg tgctgggtag aagtatggtt aaacaccata
    11401 tccaggatga tgcgaatgcc gcgtgctttc gcctgcgcga ccagctcgtc aaaatcatcc
    11461 agcgtgccgt aggtcgggtc gatagccgta taatttgcga cgtcataacc gttatccacc
    11521 tgtggcgaga tataaaacgg cgtgagccag atggcgtcca cgccgagtcg ctgtagatag
    11581 tcaaggcgct gcgtgacgcc gcgtaaatcg ccggtgccgc tgccggtcgt gtcctgaaaa
    11641 cttttcgggt agatctgata aataacgccg ttttgccacc agaggggaat agtcattgta
    11701 gtttcctgca agtacgttgg gacgcaactg cgccccgaag aagaattaga caatttgtaa
    11761 tgtgccctga cgatgcttac gctgatagat aaaggtggtc agaatcaccg ggataacgat
    11821 cgcgataacc atcgccatcg caaacacctg ccagtaagtc ggctggatag agagaatgcc
    11881 cggcaggccg ccaacgccga tgccgtttgc cattacgcca ttcagaccac agagcagacc
    11941 ggcaaggcca gagccgatca tcgcgcacag catcgggaag cgatatttga tgttgatgct
    12001 gtacattgcc ggttcggcca cccccagata ggcggagatc gccgccggaa cggaaatttc
    12061 acgttcattg tgtttacggc tggagatgat aatgcccacc acggcggagg cttgcgcgat
    12121 attcgacagc gcaatcagcg gccagactgg cgtaccgccc atgctctgaa ccatctgcat
    12181 atcgatagcg agcgtggtct ggtggacgcc ggtaatgacc aacggggcat acaggaagcc
    12241 gaacagcgcc gcgcctatcg gggcgaaact gccggtcatc agataacgta ccgcaaaggc
    12301 cacgccgtcg ccgatcatgc gaccaaaggg gccgataaag gcgtgggcga gaaagacggc
    12361 cagtatcaac gaacacaccg ggacgacgac caggtagaga taatccggca cgatgcgttt
    12421 caaccgcgtt tcaataaatc caagcgccag tcctgccagt agcgccggga taacctgcgc
    12481 ctggtagcct attttctcaa tactaaatac gccgaagttc cagacgtccg gcgtttgctg
    12541 gcccagcaga tacgcattca tcaactgcgg cgacaccagc gtcacgccga gcacgatacc
    12601 aagaatcggc gtgccgccca tttttttcac cgccgaccag cagatcccca ccggcagata
    12661 gaaaaagatc gcttcgccga tcaaccataa aaaatcataa agcgttttta gcgccggatg
    12721 catctgcgcc agtgtttgac cgtggctcat cggcacatcg ccgatcacgt tacgaaagcc
    12781 taagatcaaa ccgccgctga tcaatgccgg tagtagcgga aagaagatct ccgcgaagtg
    12841 ggaaattaac tgctcatgcc acttcatgtt ctggcgagcg gctttttttg cctgctcttt
    12901 atcagcatac gctttgccgg tggtctccag cagcgcgtta tagtaatcgc cgacttcggt
    12961 gccgatcacc acctgaaact gcccggcgtt ggtgaaacag cctttaacca tcggcaattg
    13021 ttcgatctct tttggtcggg cgttcgcggg ctggtggagc acaaagcgca ggcgagtaat
    13081 gcagtggctc accgtggcga tgttgtcgcg cccgccaacc aggtcaatca gccggtcgat
    13141 atcggcttgt tttactttgc tcatcgtaaa gcctcatggc agaggaggta agttatgggt
    13201 tggcgcaaga gtagctcttc aacgttggtt taaaaatggg aacgttcccg aaacgcggcg
    13261 acgatcacaa attacgcatg gtattccgtt taatcagcca ctcaggcgag ggtagaagga
    13321 atgacgatcc ggcgcggatc gcagcggcca ttgatctgtt cgatcagctg caaagccgcc
    13381 tgccgtccgg cttcagcata gccaggatcg acagtgacga tctccggatg caggaatttt
    13441 atcagcggcg tattcccgat gcttgccagt tgcagcgtct caatacgttg ctcctgtaaa
    13501 tacttactgg cgcccaacgc cagcgtatcg gtggcgcaga ctaacgcggt ggtatccggc
    13561 atgatgacac ttgccgtatg ctcatagccc tgcttcatgg caagaccggg aagggcggcg
    13621 acgggatgaa gtttatgttt tttgcaaaac gccaggtatg cgtcatgccg acgtttgccg
    13681 gtggtaatat cgctatgagg aacgcccaga aagctaatgt tgcggtgtcc ctgctcatac
    13741 agccgctgca taaggatatg aatcgcgccc tcgtcgtcgt aacagacgga ggcaaaacct
    13801 tgcgcatctc ttgccagcag caccagcgag gctttccagg gggcgatcaa ctcttctgtg
    13861 atgccggtaa agccaaacag caccacgcca tcaatgttac gtcgcctgag catgcccaga
    13921 tgttccatta ccagcatcgg cgagaactga ctttccatca taatagggtc gtagccctgt
    13981 tcataaaacg caggcagcat ggtctgaacc gcgaggtttt cagacaacga atcaaggcga
    14041 gtgacgataa tagcgaccac tttatcgctt tgtccccgca tcgcacgggc ggagcgggac
    14101 ggagagaaac cgtgttgatt catcaccgct tcgacacgct cgcgggtacg tttgcttacg
    14161 ccgctttcat tgttaagcac gcgggaaacg gttgatttcc ctacgccgct caggcgggca
    14221 atgtctttga tagtgagccg gttttgcatc ctgttttccc gtggcgtgac gctgatggtg
    14281 ataaaaagag taactttact caagcgaagg gcaatgggca aagtctggtt tatcgttggt
    14341 ttaattacgt aacggtatga taccgccata attgccacaa aacttatgga tttatgcgta
    14401 taatccgcgg cgcaaattat ttacttaccg gaggcgacat ggaccctgaa cccacccctc
    14461 tcccgcgatg gagaattttc cttttccggt aagcctgcct ctgctgtctt accggtgtgt
    14521 aagacagtga cacaataacg tccctgtttt tatttaaaca ttgctcatcg ggcaaggctt
    14581 tgccgcgcct gaagaatttt ctgcgcctga cttcggcgcg gagggattac ctatgctaaa
    14641 aaccattacc cgccagcttt ttgcccggct taatcgtcat ttgccttatc gtctggttca
    14701 ccgcgatccg ctgcccggcg cgcagaccgc ggtaaacgcg actatcccgc cttcgctgag
    14761 cgagcgctgt ctgaaaatcg cggcaatgga gcaggagacg ctctggcgcg tttttgatac
    14821 gcacccggag ggattaaacg ccgccgaggt gacgcgtgcg cgtgaaaagc atggcgaaaa
    14881 ccgccttccg gcacagaaac cctcgccgtg gtgggtgcat ctgtgggtat gttatcgcaa
    14941 tcctttcaac attttactca cgattcttgg cggcatttct tatgccacgg aggatctgtt
    15001 tgccgcaggc gttatcgccc tgatggtcgg tatctcaacg ctgctgaatt ttgtgcagga
    15061 agcgcgctcg acgaaagcgg cggacgcgct aaaagcgatg gtgagcaata ccgctaccgt
    15121 actgcgggtt attaatgaaa atggcgaaaa cgcctggctg gaattaccca tcgatcaact
    15181 ggtgcccggc gatattatta agctggcggc gggggatatg atcccggcgg atttacggat
    15241 tatccaggcg cgcgatctgt ttgtcgccca ggcgtcgctg accggcgaat ctctgccggt
    15301 cgagaaagtc gccacgacgc gtgagccccg gcaaaataac ccgcttgagt gcgacacgct
    15361 gtgctttatg gggacgaacg tcgtgagcgg aacggcgcag gccgtggtga tggcgaccgg
    15421 cgccgacacc tggtttggtc aattggcggg gcgcgtgtcg gaacaagata acgagcagaa
    15481 cgctttccag aaaggaatta gccgcgtcag tatgttgctg atccgcttta tgctggtcat
    15541 ggcgccggta gtactgatta ttaatggtta cacgaaaggt gactggtggg aagcggcgct
    15601 atttgcgctc tcggtcgcgg taggactcac cccggaaatg ttgccgatga tcgtcacctc
    15661 taccctcgcg cgcggggcgg tgaagctctc gaaacagaaa gttatcgtga agcaccttga
    15721 tgcgattcag aacttcggcg cgatggatat tctgtgcacc gataaaaccg gcacattgac
    15781 gcaggacaaa attatgctgg aaaatcatac agatatttcc ggtaagccca gcgagcatgt
    15841 actgcattgc gcctggctga acagccatta tcagaccggt ctaaaaaatt tactggatac
    15901 ggcggtcctg gagggagtag acgaaaccgc cgcgcgtcag ctctccggac gctggcagaa
    15961 aatcgatgag attccgtttg attttgagcg tcgccggatg tcggtggtgg tcgccgaaga
    16021 ttcgaatgtg catcaactgg tctgcaaagg cgcgctacag gagatcctga acgtgtgtac
    16081 tcaggtgcgc cacaacggcg atattgtgcc gctggacgac aatatgctgc gccgggtgaa
    16141 acgcgttacc gacacgctga accgtcaggg gctacgcgtg gtcgccgtcg cgaccaaata
    16201 cctgcctgcg cgtgagggcg attaccaacg tatcgatgag tctgacctca ttctggaagg
    16261 gtatatcgct tttctcgatc cgccgaaaga gaccaccgcg ccggcgttga aagcgctgaa
    16321 ggcgagcgga attacggtga aaattctcac cggcgacagc gagctggtag cggcgaaagt
    16381 ttgccatgag gttgggctgg atgcgggcga tgtcgttatt ggcagtgata ttgaaggatt
    16441 aagcgacgac gcgctggcgg cgctggccgc ccgtacgacg ttgtttgcgc gtctgacgcc
    16501 gatgcataaa gagcgcatcg tcactttgct caaacgcgag gggcatgtgg tcggttttat
    16561 gggcgacggg attaacgatg ccccggcgtt gcgggcagcg gatattggta tctcggtaga
    16621 tggcgcggtg gacatcgccc gtgaggcggc cgatattatc ctgctggaaa agagcctgat
    16681 ggtgctggaa gaaggcgtca ttgaaggtcg tcgtactttt tctaatatgt tgaaatatat
    16741 caagatgacg gccagctcaa atttcggtaa cgtgtttagc gtgctggtag cgagcgcttt
    16801 tttgccgttc ctgccaatgc tgccgctgca cttgctgatt caaaacctgc tgtacgatgt
    16861 atcccaggtg gcgattccgt ttgataatgt cgatgaagaa caaattcaaa agccgcagcg
    16921 ctggaatccg gcggatttgg ggcgctttat ggtctttttc ggtccgatca gctcgatttt
    16981 cgacattttg accttttgtc tgatgtggtg ggtatttcat gcgaatacgc cagaaacgca
    17041 aaccttgttc cagtccggct ggtttgtggt gggattacta tcgcaaacgc tgattgtgca
    17101 tatgatccgt acccgtcgtc tgccgtttat tcaaagtcgc gccgcctggc cgctgatggc
    17161 gatgacgttg ttggtgatgg tcgtgggagt ttcgttgccg ttttcgccgc tggcgtctta
    17221 cctgcagttg caggcgctgc cgttaagcta tttcccgtgg ctgattgcta ttctggcggg
    17281 ctatatgacg ttaacccagt tagtgaaagg gttttacagc cgacgttatg gctggcagta
    17341 aacactttcg tcggggattc gccagcgtgc ttaatccccg atatcgctaa ccaaaccaga
    17401 tgcccgtaaa gctcgacaag tttaacgcga tcggctttat ctttaaattt cagggcttat
    17461 tcaagcaact gtagaatgct atatgcaggc ataaaaaaga ggaatgtcca gctaagtttg
    17521 taaaatacat tctctgcccc cgagccagaa cgagaggagg agatgtccca ccgctggata
    17581 tgttttgcgg atatgcgacg aaagcggcga atatagctaa tgcaataaac taagtaagga
    17641 ggaatcgcta aggcggcagt gggtttagga aacataaggg taagcaatat ggctgcgata
    17701 atgaagcata aaaagacgat cttcgcagta gattctatct gttttaattc ctggcgtatg
    17761 ctttcagcat gtttctcctg ccagcgacgg agcgtgctgt tgctaaatcc atattcttcg
    17821 cataacgcct tattcggcac gccgttttta gactgttgca gaaaatcggc gatttgctcc
    17881 tcggtaaaac gcgctcttac cattgccgcc tctccatggc tgttggtgcc ccgaaccggg
    17941 caaacttgcg ccgcccggcg gggatgacgt ccggcgctta gcgacgaaca gcgatcgctt
    18001 caatctcaat tttcacgtct ttcggcagac gggcaacttc cacgcaggaa cgcgccggga
    18061 aggtcgcgtt gtgctcggtg aagaacgctt cgtaggtggc gttgacggtc gcgaaatcgt
    18121 tcaggtcttt cacgaagacg gtcgttttca caatgtcgcc tactttcagg ccagcggctt
    18181 ccacgatagc tttaacgttt tccagcgact gacgtgcctg agcggatacg tcttccgcta
    18241 cggcgccggt tttcggatcg accggaatct gaccggaagt gattaccatg ctacccaggt
    18301 ctacgccctg tacgtaaggg ccgattgctg ctggtgcatt ttccgtcgca atagttttgc
    18361 tcatgatttc tcctgaatta cagcggtaat agaatgtccc cgctcattat agggagccgg
    18421 gatctcataa ccaaccccca ttagttggcc agcaccacat tatgcgaaaa ctctttttca
    18481 cagtatttgc atttgagggc gatatcattg gcgcgttttt tcactgcaaa gctggaggat
    18541 accggttccg cgtggctgat gcagttgctg ttcgggcaaa ccagcacatt attaatacgc
    18601 tctggcaggc tggggcgcga tttcccgacc acgtcgtagt tgtcgatgcg gttaacggtg
    18661 gcctgcggcg cgtacagagc aagttggtta acctgctcat cggtgaggaa ggtgttttct
    18721 attttgatta agtctttacg ccccatctcg ccagacggga gattcagacc gatagtgatt
    18781 cgctgatcgg tctcggtcaa tttaaacaga ctcagcagtt taaagcctac ctgcgcaggg
    18841 atatggtcaa tcacggtgcc gcatttaatg gcttcaacct gcagtttgtt atcgtgtgtc
    18901 atcgcttttc tcccttacag actcagttcg ctattcagta ccaacgccag taacgcctgg
    18961 cgagcgaaaa taccgttgcc cgcctgttgg aagtaccagg cgtgtggcgt tttatccaca
    19021 tccgtggtga tttcatcaat cctcggcagc gggtgcagca ctttcatatt ttcacgcgcg
    19081 ccgttcaggt cgctggcgcg cagaacaaac tgcgccttca cattggcgta ctccgacggg
    19141 tcgagacgct ctttctgtac gcgagtcata tagaggatgt cgacgtcggc catgacctct
    19201 tcaatagaac catgcaggct ccaggccatc cctttttcat ccagcatatc cagaatgtac
    19261 tgcggcatcg ccagcgcgtc cggcgcgata aaataaaaac ggttgccgct aaatttcgcc
    19321 agcgcctggg ttagcgaatg cacggtgcgg ccatatttca gatcgccgac catcgcgata
    19381 tgcaggttat ccagacggcc ctgcgtttcc tggatggtga acagatccaa cagagtttgc
    19441 gtcggatgct gattcgaacc gtcgcccgca ttgagcaccg gcacctgacc ggaaaactcc
    19501 gtcgccagac gtgccgcgcc ttcttgcgga tggcgcatca caatcgcgtc cacgtaagtg
    19561 ctaatcactg agatcgtgtc ggctaacgtt tctccttttt tccccagcga cgtgttggcg
    19621 ctgtcggaga agcccactac gctggcgccc aggcgatgca ttgaggtttc aaacgacagg
    19681 cgggtacgcg tggaggcttc gaaaaagcag ctggcgatca ctttatgttt caaaagctcc
    19741 ggctgcgggt tggcttttaa tttcgccgcc gtcgccagta ccagattaag atcgtcgcgg
    19801 ctgaggtcgt ttatggaaat gatatgtttt tgatatagcg ggttagccat gtttatctcc
    19861 tgacgcctgg gcaaaaaaaa gcccctcaat tgaggggctt ggtattggtt ttcaacggaa
    19921 agaaaaacgg caggcctgcg tcttttttca gacgcggtaa gacagaatgt cgtacacact
    19981 gaaccatgct tcctcccggc aaattgtccg cgattatact cagctctgtt ttgggatcaa
    20041 gcgaattaat g
//
LOCUS       DAJVSD010000060        19982 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.060, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000060 DAJVSD010000000
VERSION     DAJVSD010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 19982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19982
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.060"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            54..524
                     /gene="argR"
                     /locus_tag="OQP62_001782"
     CDS             54..524
                     /gene="argR"
                     /locus_tag="OQP62_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001257852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HCS1721355.1"
                     /translation="MRSSAKQEELVRAFKALLKEEKFSSQGEIVLALQDQGFENINQS
                     KVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSP
                     GAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPASGFSVRDLYEAILELFEQEL"
     gene            889..1152
                     /gene="yhcN"
                     /locus_tag="OQP62_001783"
     CDS             889..1152
                     /gene="yhcN"
                     /locus_tag="OQP62_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide/acid stress response protein YhcN"
                     /protein_id="HCS1721356.1"
                     /translation="MKIKTTVATLSILSVLSFGAFAAEPISAEQAQNREAIGSVSVSA
                     IGSSPMDMNAMLSKKADEQGATAYHITEARSGSNWHATAELYK"
     gene            1256..1522
                     /gene="yhcN"
                     /locus_tag="OQP62_001784"
     CDS             1256..1522
                     /gene="yhcN"
                     /locus_tag="OQP62_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide/acid stress response protein YhcN"
                     /protein_id="HCS1721357.1"
                     /translation="MKTKYIIASLGLATLLSFGANAAVHQVNAEQAQNLQPMGTISVS
                     QIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK"
     gene            complement(1582..1854)
                     /locus_tag="OQP62_001785"
     CDS             complement(1582..1854)
                     /locus_tag="OQP62_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721358.1"
                     /translation="MNVYTFDFNDIKNQSDFYREFTQTFGLASEKVSDLDTLWDAVMS
                     DILPLPLEIEFVHLPDKLRRRYGALILLFDEAEEELEGRLRFNVRH"
     gene            complement(2026..3993)
                     /gene="aaeB"
                     /locus_tag="OQP62_001786"
     CDS             complement(2026..3993)
                     /gene="aaeB"
                     /locus_tag="OQP62_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="p-hydroxybenzoic acid efflux pump subunit AaeB"
                     /protein_id="HCS1721359.1"
                     /translation="MGIFSIANQHIRFAVKLACAIVLALFIGFHFQLETPRWAVLTAA
                     IVAAGPAFAAGGEPYSGAIRYRGMLRIIGTFIGCIAALIIIISMIRAPLLMILVCCVW
                     AGFCTWISSLVRIENSYAWGLSGYTALIIVITIQTEPLLTPQFALERCSEIVIGIGCA
                     ILADLLFSPRSIKQEVDRELDCLLVAQYQLMQLCIKHGDSEEVDNAWGDLVRRTAALE
                     GMRSNLNMESSRWVRANRRLKALNTLSLTLITQSCETYLIQNTRPELITDTFRELFET
                     PVETVQDVHRQLKRMRRVIVWTGERETPVTLYSWVGAATRYLLLKRGVISNTKISATE
                     EEILQGEPVVKVESAERHHAMVNFWRTTLSCILGTLFWLWTGWTSGNGAMVMIAVVTS
                     LAMRLPNPRMVCIDFIYGTLAALPLGLLYFLVIIPNTQQSMLLLCLSLAVLGFFIGIE
                     VQKRRLGSMGALASTINIIVLDNPMTFHFIQFLDSALGQIVGCMLAFIVILLVRDKSK
                     DRTGRVLLNQFVSAAVSAMTTNVVRRKENRLPALYQQLFLLMNKFPGDLPKFRLALTM
                     IIAHQRLRDAPIPVNEDLSVFHRQLRRTADHVISAGSDDKRRRYFGQLLDELDIYQEK
                     LRIWEAPPQVTEPVKRLTGMLHKYQNALTDS"
     gene            complement(3999..4931)
                     /gene="aaeA"
                     /locus_tag="OQP62_001787"
     CDS             complement(3999..4931)
                     /gene="aaeA"
                     /locus_tag="OQP62_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="p-hydroxybenzoic acid efflux pump subunit AaeA"
                     /protein_id="HCS1721360.1"
                     /translation="MKTLTRKLSRTAITLVLVILAFIAIFRAWVYYTESPWTRDARFS
                     ADVVAIAPDVAGLITHVNVHDNQLVKKDQVLFTIDQPRYQKALAEAEADVAYYQVLAQ
                     EKRQEAGRRNRLGVQAMSREEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAP
                     ADGWVTNLNVYAGEFITRGSTAVALVKKNSFYVQAYMEETKLEGVRPGYRAEITPLGS
                     NRVLKGTVDSVAAGVTNASSTSDAKGMATIDSNLEWVRLAQRVPVRIRLDEQQGNLWP
                     AGTTATVVITGKQDRDASQDSFFRKLAHRLREFG"
     gene            complement(4939..5142)
                     /locus_tag="OQP62_001788"
     CDS             complement(4939..5142)
                     /locus_tag="OQP62_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000051842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AaeX family protein"
                     /protein_id="HCS1721361.1"
                     /translation="MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRMLVPTGIYDFV
                     WHPALFNTALYCCLFYLISRLFV"
     gene            5324..6253
                     /gene="aaeR"
                     /locus_tag="OQP62_001789"
     CDS             5324..6253
                     /gene="aaeR"
                     /locus_tag="OQP62_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator AaeR"
                     /protein_id="HCS1721362.1"
                     /translation="MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDEL
                     QVKLLNRSTRSIGLTEAGKIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTM
                     AQNVLAGLTAKLLKEYPGLAVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGA
                     MPMVVCAAKPYLAQYGVPEKPADLSSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRF
                     VTNDPMTLVRWLTAGTGIAYVPLMWVIDEINRGDLEILLPRYQSDPRPVYALYTEKDK
                     LPLKVQVVINALTDYFVDVAHLFQGMHGRGKEK"
     gene            complement(6376..7821)
                     /gene="tldD"
                     /locus_tag="OQP62_001790"
     CDS             complement(6376..7821)
                     /gene="tldD"
                     /locus_tag="OQP62_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007888214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HCS1721363.1"
                     /translation="MSLNLVSEQLLAANGLNHQDLFAILGQLAERRLDYGDLYFQSSY
                     HESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRE
                     NGEGKVKTLAAVAHQPLYTTLDPLQSMSREEKLDILRRVDKAAREADKRVQEVNASLT
                     GVYELILVAATDGTLAADVRPLVRLSVSVQVEEDGKRERGASGGGGRFGYEYFLADLD
                     GEVRADAWAKEAVRMALVNLSAVAAPAGTLPVVLGAGWPGVLLHEAVGHGLEGDFNRR
                     GTSVFSGQIGEQVASALCTVVDDGTMMNRRGSVAIDDEGTPGQYNVLIENGVLKGYMQ
                     DKLNARLMGAAPTGNGRRESYAHLPMPRMTNTYMLAGQSTPQEIIESVEYGIYAPNFG
                     GGQVDITSGKFVFSTSEAYLIENGKVTTPVKGATLIGSGIETMQQISMVGNDLKLDNG
                     VGVCGKEGQSLPVGVGQPTLKVDNLTVGGTA"
     gene            complement(7966..11766)
                     /gene="yhdP"
                     /locus_tag="OQP62_001791"
     CDS             complement(7966..11766)
                     /gene="yhdP"
                     /locus_tag="OQP62_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA2 domain-containing protein YhdP"
                     /protein_id="HCS1721364.1"
                     /translation="MRRLPGILLLTGAALIVIAALLVSGLRLALPHLDAWRPAILNKI
                     ESVTGVPVAASQLSASWQNFGPTLEAHNIHAALKDGGELSIKRVTLALDVWQSLLHMR
                     WQFRDLTFWQLNFRTNTPLQSSDGEGIETSRLSDLFLRQFDHFDLRDSQISFLTLSGQ
                     RAELAIPQLTWLNGKERHRAEGEVSLSSLTGQHGVMQVRMDLRDDDGLLNNGRVWLQA
                     DDIDVKPWLGKWMQDNVALQTARFSLEGWMTLSKGEIAGGDVWLKQGGASWLGDNTTH
                     TLSVDNLTAQISREQPGWQFYIPDTRITLDGKPWPSGALTVAWLPQQDVGGENHTRSD
                     ELRIRASNLELAGLEALRPLAAKLSPVLGEIWQATQPSGKIATLALDIPLQATEKTRF
                     QASWENLAWKQWKLLPGAEHFSGTLAGSVEDGQMKVAMQQAKMPYETVFRAPLEIENG
                     VATLSWLKNENGFQLDGRDIDVKAKAVHARGGFRYLQPTGDEPWLGILAGISTDDGSQ
                     AWRYFPENLMGKALVDYLSGAIQGGEADNATLVYGGNPHLFPYKHNEGQFEVLVPLRN
                     ATFAFQPDWPALKNLNIELDFLNDGLWMRSDSVDLGGVKASKLAAAIPDYSKEKLLID
                     ADINGPGKAVGPYFDETPLKDSLGSTLAELQLDGDVNARLHLDIPLDGEQVTAEGDVS
                     LRNNSLFIKPLNSTLKNLNGKFSFVNGALKSGPLTANWFNQPLNLDFSTTEGAKAYQV
                     AVNLNGNWQPTRMGVLPPQLNDALSGSVTWNGKVGIDLPYHADTTYHIELNGDLRNVS
                     SHLPSPLNKPAGEAIPVNIQADGNLKSFALTGSAGSKNHFNSRWLLNQKLTLDRAIWT
                     TDSRTIPPLPAQQGVELNLPALDGAQWLALFQKGAADNVSSSAEFPQRVTLRTPALSL
                     GGQQWNNLSVVSAPSLNGTKIEAQGREVNATLLMRNHAPWLANIKYLYYNPGVAKTHA
                     SSPTPTSPLASANTISFRGWPDLQLRCEECWLWGQKYGRIDGDFAIKGNTLTLANGLI
                     DTGFARLKANGEWVNAPGNERTSLKGSLHGSNLDTAAGFFGISTPIQNASFNVDYDLH
                     WRNPPWQPEEATLNGILRTRLGKGEFTDLSSGHAGQLLRLLSFDALLRKLRFDFRDTF
                     SEGFYFDSIHSTAWIKDGVLHTDDTLVDGLEADIAMKGSVDLVRRRLDMEAVVAAEIS
                     ATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYRITGPVDAPQINEVLRQPRK
                     ESQQ"
     gene            complement(11877..13346)
                     /gene="rng"
                     /locus_tag="OQP62_001792"
     CDS             complement(11877..13346)
                     /gene="rng"
                     /locus_tag="OQP62_001792"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HCS1721365.1"
                     /translation="MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKG
                     RVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGDEQKQFTVRDISELVRQGQD
                     LMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE
                     YCDEQGGFIIRTAAEGVCEEDLASDAAYLKRVWTKVMERKKRPQTRYQMYGELALAQR
                     VLRDFADAQLDRIRVDSRLTYESLLEFTAEYIPEMTSKLEHYSGHQPIFDLYDVENEI
                     QRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQ
                     LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSINGFSPLGLVEMTRKR
                     TRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE
                     ALKGEESHALAEVEIFVGKQVKVQVEPLYNQEQFDVVMM"
     gene            complement(13336..13929)
                     /gene="maf"
                     /locus_tag="OQP62_001793"
     CDS             complement(13336..13929)
                     /gene="maf"
                     /locus_tag="OQP62_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HCS1721366.1"
                     /translation="MTTLYLASGSPRRQELLIQLGFSFEQVVPGIEEQRRVQESAQQY
                     VVRLAREKAQAGVALVPRDLPVLGADTIVVLNGEVLEKPRDAAHAAEMLRLLSGNTHQ
                     VMTAVALADSQQTLDCLVVTEVTFRTLSAQDITGYVASGEPLDKAGAYGIQGRGGCFV
                     RKINGSYHAVVGLPLVETYELLSHFNALRDKRDKHDG"
     gene            complement(13938..14426)
                     /gene="mreD"
                     /locus_tag="OQP62_001794"
     CDS             complement(13938..14426)
                     /gene="mreD"
                     /locus_tag="OQP62_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001487551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HCS1721367.1"
                     /translation="MASYRSQGRWVIWLSFLIALLLQIMPWPDDIIVFRPNWVLLILL
                     YWILALPHRVNVGTGFVMGAILDLISGSTLGVRALSMSIVAYLVALKFQLFRNLALWQ
                     QALVVMLLSLAVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWLFLLMRKVRQQFA
                     VQ"
     gene            complement(14429..15481)
                     /gene="mreC"
                     /locus_tag="OQP62_001795"
     CDS             complement(14429..15481)
                     /gene="mreC"
                     /locus_tag="OQP62_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HCS1721368.1"
                     /translation="MKPIFSRGPSLQIRLILAVLVALGVIIADSRLGTFSQIRTYMDT
                     AVSPFYFISNGPRELLDSVSQTLASRDQLELENRALRQELLLKNSDLLMLGQYKQENA
                     RLRELLGSPLRQDEQKMVTQVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQ
                     VVAVAKLTSRVLLICDATHALPIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGD
                     VLVTSGLGGRFPEGYPVAVVSSVKLDTQRAYTVIQARPTAGLQRLRYLLLLWGADRNG
                     ANPMTPEEVHRVANERLMQMMPQVLPSPDAMGPPAPVPDPATGITQPSAGQTTPVSTQ
                     SSPSGATTPSARAPGG"
     gene            complement(15546..16589)
                     /gene="mreB"
                     /locus_tag="OQP62_001796"
     CDS             complement(15546..16589)
                     /gene="mreB"
                     /locus_tag="OQP62_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000913396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreB"
                     /protein_id="HCS1721369.1"
                     /translation="MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQD
                     RAGSPKSVAAVGHDAKQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNS
                     FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATG
                     SMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERI
                     KHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALE
                     QCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALE
                     MIDMHGGDLFSEE"
     gene            complement(16897..18837)
                     /gene="csrD"
                     /locus_tag="OQP62_001797"
     CDS             complement(16897..18837)
                     /gene="csrD"
                     /locus_tag="OQP62_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase E specificity factor CsrD"
                     /protein_id="HCS1721370.1"
                     /translation="MRLTTKFSAFITLLTGLTIFVTLIGCSLSFYNAVQYKYVSRVQA
                     TATAIDTHLVTHDIVSLTPQIDELMIASDIVRVDLLQGERSVYSHSRARGYRPAGTSD
                     MYRELVVPLIKHPGMSLRLVYQDPMGNYFHSLITTAPLTLAIGFIVLILFLSVRWLQR
                     QLSGQELLEIRSTRILNGERGANVRGSVYEWPARTSSALDVLLSEIQFAHEQRSRLDT
                     LIRSYAAQDTKTGLGNRLFFDNQLATLLEDQEKVGVHGVVMMIRLPDFNLLRDSLGGN
                     QAEEQMFMLINLLSTFIMRYPGSLLARYHRSDFAVLLPHRTLKEAESIAGQLLKAVDA
                     LPANKMLDRDDMVHIGICAWRSGQSTDQVMEHAEAAARNAALQGGNSWAIYDDTLPEK
                     GRGNVRWRTLIEQMLNRGGPRLYQKPAVTREGRVHHRELMCRIYDGKEEVSSAEYMPM
                     VLQFGLSEEYDRLQISRLITLLGYWPDENLAMQLTVESLIRPRFQRWLRDTLMQCEKS
                     QRNRIIIELAEADVCQHISRLQPILRLVNALGVRVAVTQAGLTLVSTSWIKALNVELL
                     KLHPSLVRNIEKRTENQLLVQSLVEACAGTPTQVYATGVRSRGEWQTLTKRGVAGGQG
                     DFFASSQLLDTNVKKYSQRYSV"
     gene            19041..>19982
                     /locus_tag="OQP62_001798"
     CDS             19041..>19982
                     /locus_tag="OQP62_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS1721371.1"
                     /translation="MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDA
                     LAITGKGKIIRHFPMIPGIDFAGTVHASEDPRFHAGQEVLLTGWGVGENHWGGLAERA
                     RVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVG
                     STAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDT
                     VGDKVLAKVLAQMNYGGCVAACGLAGGFALPTTVMPFILRNVRLQGVDSVMTPPARRA
                     EAWARLVKDLPESFYAQAATEITLADAPKFADAIINNQ"
BASE COUNT         4757 a         5702 c         5052 g         4471 t
ORIGIN      
        1 attcatctgt atgcacaata atgttgtttc taccgccata ttacgggtga cttatgcgaa
       61 gctcggctaa acaagaagaa ctagtaagag cgtttaaagc gctcctcaaa gaagaaaaat
      121 tcagctcaca gggcgaaatc gtcctcgcgt tgcaggatca gggctttgaa aatatcaatc
      181 agtccaaggt ctcgcgcatg ttgactaagt tcggcgcagt gcgtacacgt aacgcaaaaa
      241 tggaaatggt gtactgtctt ccggctgaac tgggcgtccc aacaacatcc agtccgttga
      301 aaaatctggt gctggatatc gactataacg atgctgtcgt ggtgattcat accagccccg
      361 gcgcggcaca actcattgcg cgcctgctgg attcactggg gaaagcagaa ggtattctcg
      421 gcacgattgc cggcgacgat actatcttca ctacgcctgc cagcggcttt tccgtaagag
      481 atctgtacga agccattctg gaactttttg aacaagagct ttagtcccac ttcctccgtc
      541 gtcgtacggc ggaggcatct ttttgccctc tcccctcgcc gctttcctgt acggctatca
      601 tttggcaaat catgccctta aacattcacc acatgaatga aaaatcaaaa aaacgcacaa
      661 aatgtcaatt tttttaacca gttgattttc ttttattttt caaacgacag cggcgaaaaa
      721 cagcaatttt aattccataa cgttataaaa aataaaattt ttaatgtctt taaaaagcag
      781 aaacaattag cgtggtatta attaattgcg tgattagtgt atacttaatt ttgtgatgag
      841 ggtcacgaaa caaagacccc agtaaaggaa ttcgacgagg taaaaatcat gaaaatcaaa
      901 accactgttg caacattaag cattctgtcc gttctctctt ttggcgcttt cgccgcagaa
      961 cctatcagcg cagagcaagc gcaaaaccgt gaagcaatcg gatcggtttc agtcagcgct
     1021 atcggctcat cgcctatgga tatgaatgcc atgctgagca aaaaagcaga tgaacaaggc
     1081 gctacggcct accacattac cgaagcgcgt agcggcagca actggcacgc cactgccgaa
     1141 ctgtacaaat aaaattcacc tgccatcgca tataacgtgt cgttacttcg cggagatatc
     1201 gcataagaaa agcccattaa tccgcgaggt tgaccctata aaggaataaa agaccatgaa
     1261 aacgaaatac attatcgcat cactcggcct ggccactctg ctctctttcg gcgcaaatgc
     1321 cgcagtacac caggttaacg cggaacaggc gcagaatctg caaccgatgg gcaccatttc
     1381 cgtctcgcag attggcagta cgccaatgga tatgcgccag gagatcgtcg ctaaagccga
     1441 aaaagcaggc gctaatagct atcgcatcat cgaattaaaa gaaggtgata actggcacgc
     1501 caccgccgag ttgtataagt aaaccttcgt cgtctaaccc gacgacttgc ccccgcatgc
     1561 cgggggcttt tttatgcttt ttcaatgccg gacattaaac cgtagccgtc cctccagctc
     1621 ttcttccgct tcatcaaaga gtaaaatcag cgccccgtag cgcctgcgca gtttatcagg
     1681 caggtgaacg aactcaatct ctagcggtag gggtaagata tcgctcatta ccgcatccca
     1741 taatgtatca agatcgctta ctttctcact ggcaaggcca aacgtctgcg taaactcgcg
     1801 ataaaaatcg ctttggtttt taatatcatt aaaatcaaat gtatagacat tcatagccag
     1861 ccaccatccc cgacagacaa ttgtctgttt tactactaag catcattatg cagaggtttc
     1921 acttccagaa acgcttttag ccccggagca ctcttgcgct gtttttgtat ctcaaataag
     1981 tatagtcata aaaaaaccga cgcttttggc atcggttctt gtggattagc tatcggtaag
     2041 cgcgttctgg tatttatgta acatgcccgt caggcgttta accggttccg tcacctgcgg
     2101 cggcgcctcc cagatacgta atttctcctg atagatatcc agctcatcca gcaactgacc
     2161 aaagtagcgt cgccgtttat catcgcttcc ggcggaaata acatggtctg cggtacgacg
     2221 aagctggcgg tggaacactg acagatcttc attaaccggt atcggcgcgt cgcgcagacg
     2281 ttgatgagca atgatcatcg ttagcgccag gcggaacttc ggcaaatcgc ctgggaattt
     2341 attcatcagc aaaaagagtt gctgatataa cgcaggcaga cggttttctt tacggcgtac
     2401 cacgttggtc gtcattgccg agaccgcagc ggaaacaaac tgattaagca gcacgcgacc
     2461 ggttcgatct ttggatttat cacgcaccag caggatgacg ataaacgcca gcatacagcc
     2521 gacaatttgc cccaacgcgc tgtcgaggaa ctggatgaaa tggaacgtca tcggattatc
     2581 caacacaata atgttaatcg tactggccag cgcccccatc gaccccagac gccgtttctg
     2641 aacttcaata ccgataaaga accccaatac cgccaggctc aaacataaca acagcatact
     2701 ttgctgcgta ttgggaataa tcaccaggaa atagagcaat cccagcggca acgccgccag
     2761 agtgccataa ataaaatcaa tgcagaccat gcgcggattg ggtaaacgca tcgccagcga
     2821 ggtcaccacg gcaatcatca ccatcgcgcc attacccgat gtccagccgg tccatagcca
     2881 gaataatgtc cccagaatgc aggaaagcgt ggtgcgccag aagttcacca tcgcatggtg
     2941 gcgttcagcg gattccactt taactacggg ctcgccttgc aggatctctt cttccgtcgc
     3001 gctgattttg gtgttactga tcacgccgcg tttaagcaac agatagcgcg ttgcagcgcc
     3061 tacccagcta taaagcgtga cgggcgtttc gcgctcgccg gtccaaacaa tgacacgccg
     3121 catccgtttt aactgcctgt ggacgtcctg taccgtttca accggcgtct cgaacagttc
     3181 ccggaatgta tcggtaatca gttccggccg cgtgttttga ataagataag tttcacagga
     3241 ttgcgtaatc agcgtgagcg aaagcgtatt caacgctttc aggcggcggt tagcgcgtac
     3301 ccagcgcgaa gattccatat tcagattact tcgcatcccc tccagcgccg ccgtgcgtcg
     3361 caccagatcg ccccaggcgt tgtcgacttc ttcgctgtcg ccatgcttaa tacaaagttg
     3421 cattagctga tattgcgcta ccagtaaaca gtccagttcg cgatcaacct cctgctttat
     3481 cgatcgcggc gagaaaagca gatccgctaa aatagcgcag ccaatgccga tgacgatttc
     3541 gctacagcgc tcaagcgcaa attgcggcgt aagcagcggc tccgtctgaa tggtaatcac
     3601 aatgatcagc gcagtataac ctgacagtcc ccacgcataa gagttttcga tccgtactaa
     3661 agaggagatc caggtacaaa aaccggccca gacacagcac accagaatca tcaatagcgg
     3721 cgcgcggatc atagagataa taatgataag cgcggcgata cagccaataa acgtcccgat
     3781 aatacgcaac attccgcgat aacggatagc gccggaatag ggttccccgc cggcggcaaa
     3841 tgccgggcct gccgccacga tcgcggcggt cagcaccgcc caacgcggcg tctccagctg
     3901 aaaatggaag ccgataaata atgccagcac aatggcgcac gccagcttta ccgcaaaacg
     3961 aatgtgctgg ttggcaatgg agaaaatgcc catgacgatt aaccgaattc gcgcagccgg
     4021 tgcgccagtt tacggaagaa ggagtcctgg cttgcgtcac gatcctgctt accggtgatc
     4081 acgacggttg ccgtcgtacc ggcaggccac aaattcccct gctgctcgtc gagccggatg
     4141 cgcaccggga cacgctgggc cagacgcacc cattcgaggt tagagtctat cgtcgccatc
     4201 cctttcgcat cgctggtact gctggcattc gttacccctg ccgccacgct atcgacggtg
     4261 ccttttaata cccggttgct gccgagcggc gtgatttcgg cacgatatcc cggacgcacg
     4321 ccttccagct tggtctcttc catataggcc tgcacgtaaa aagagttctt tttcaccagg
     4381 gcgacggctg tggaaccgcg ggtaataaat tcaccggcat aaacattgag gttagttacc
     4441 cagccgtctg caggcgcacg aatgacggta cgctccagat cgagtttagc cagatcgcgc
     4501 gtcgcctggg ctttagccaa ttgatgcagt accgtctgca agacgttgtt cgcctgatcg
     4561 atctcttccc gggacatcgc ctgtacgccg aggcgattac ggcgaccggc ttcctggcgt
     4621 ttttcctgcg ccagtacctg ataataggct acatcagctt ccgcttccgc cagcgctttt
     4681 tgatagcgtg gctgatcgat ggtaaacagg acctgatcct ttttcaccag ttggttatca
     4741 tgcacgttta catgggtaat caggcccgcg acatccgggg caatagcgac gacatcggcg
     4801 ctaaaacgcg cgtcgcgcgt ccagggtgat tcggtgtaat acacccaggc gcggaaaatg
     4861 gcgataaagg ccagaataac cagtacgagg gtaatggccg tacgggagag ttttcttgtt
     4921 agtgttttca cttcaacctc aaacgaacag gcgcgatatt aaataaaaca gacaacaata
     4981 cagcgcggta ttgaacagag ccggatgcca gacaaaatca tagatgcccg tcggcacaag
     5041 catccgacgc accagccaaa aaatagccag tgacaaaagc aattcgaaaa atatcggtgg
     5101 gaaggaaaga ccaaacacca cgataacggg aaacagactc atgttgacct tgatttctga
     5161 gagagagcag gcgatagatt gttaagctac atcgccgcag agaagggcaa gagacgccag
     5221 gcgagagcga catagctctt attcgaataa tagtatatta acgtaattgt tatgctgtta
     5281 tctatattat gtgatctaaa tcacttttaa gccagagtga ataatggaac gattaaaacg
     5341 aatgtcggta ttcgccaaag ttgttgagtt tggctctttt accgccgcag ccagacagct
     5401 gcaaatgagc gtatcgtcca tcagccagac tgtggcgaaa ctggaagatg agcttcaggt
     5461 taaattgctc aaccgcagca cacgcagcat tgggctcacc gaagctggaa aaatctatta
     5521 tcagggctgt cgtcgtatgc tgcatgaagt gcaggatgtt cacgagcagc tttacgcttt
     5581 taataacacg cctatcggta cattgcgtat cggctgttct tcaaccatgg cgcaaaatgt
     5641 gctggccggg cttaccgcaa aattattaaa agagtatccc ggtctggcgg tcaatctggt
     5701 gacaggaatt ccggccccgg atttaattgc cgacgggctg gacgtggtga tccgcgtggg
     5761 cgcgctgcaa gactccagcc tgttttcccg tcgactcggc gcgatgccga tggttgtgtg
     5821 cgccgccaag ccctacctcg ctcagtacgg cgtcccggaa aaacccgccg atctcagtag
     5881 ccattcctgg ctggaatata gcgtgcgccc ggataatgag tttgaactta ttgcgccgga
     5941 aggaatttct acccgactga ttccacaggg gcggttcgtc actaacgatc cgatgacgct
     6001 ggtacgctgg ctgaccgccg gaaccggaat cgcctatgtg ccgctgatgt gggtgatcga
     6061 tgagatcaat cgtggcgatc tggagatcct gctgcctcgc tatcagtccg atccccgtcc
     6121 ggtgtacgcg ctgtacaccg aaaaagataa gctgccgctt aaagtgcagg tagtgattaa
     6181 cgcgttaact gactattttg tcgatgtcgc acacctgttt caggggatgc acgggcgagg
     6241 gaaagaaaaa taaaaacacc gggtaattgc tgaagacgat tgtagatcag atgccacccg
     6301 aggcagacat tgcctgatgg cgctgcgctt atcaggcctg ggcggcacat accacaggcc
     6361 tgataaggcg gacagttatg cggtgccgcc aaccgtcagg ttatcgactt tcagcgtcgg
     6421 ctggcctacg cctaccggca ggctttggcc ctctttaccg cagaccccca ccccgttatc
     6481 cagcttaagg tcgttgccga ccatggagat ctgttgcatc gtttcaatgc ctgatccaat
     6541 caacgtcgcg cccttcaccg gcgtcgtgac tttgccgttt tcaatcagat acgcttccga
     6601 ggtagagaac acaaacttgc cggaggtgat atccacctga ccgccgccaa agttaggcgc
     6661 atagatgcca tactcaacgg attcgataat ttcctgcggc gttgactgcc ccgccaacat
     6721 ataagtattc gtcatacgcg gcatcggcag atgcgcataa gattcgcgac gcccgttacc
     6781 ggtcggcgca gcgcccatca ggcgcgcgtt cagcttgtcc tgcatgtatc ctttcagcac
     6841 gccattttca atcaatacgt tgtactggcc tggcgtacct tcatcatcga tagcaacgga
     6901 gccacgacgg ttcatcattg tgccgtcatc cactacggtg caaagcgcgg aggcaacctg
     6961 ctcaccgatc tgaccgctaa acacagacgt cccacgacgg ttgaaatcac cttccagccc
     7021 gtgcccgacc gcttcgtgca gcaatacgcc cggccacccg gcgcccagaa ccaccggtaa
     7081 cgtccccgct ggcgcagcga ccgcggagag attaaccagc gccatgcgta ccgcttcttt
     7141 cgcccacgcg tcggcgcgca cctcgccgtc aagatcggca agaaaatact cataaccaaa
     7201 gcgaccgccg ccgccgctgg cgccgcgctc gcgtttaccg tcttcttcca cctgcacgct
     7261 aacggacaaa cgcaccagtg gacggacatc cgccgccagc gtcccgtcgg tcgccgccac
     7321 gaggattaat tcatatacgc cggtcaggct ggcgttaact tcctgcacgc gtttatcggc
     7381 ttctcgcgcc gctttatcaa cgcgtctgag gatatccagc ttctcttcgc ggctcatact
     7441 ttgcagcgga tcaagggtgg tgtagagcgg ctgatgcgct acggcggcga gcgtttttac
     7501 cttgccttcg ccgttctcgc gtacaatggt tcgcgctgcc tgcgcactct gctccagcgc
     7561 aaggaggctt atctggtcag cataagcaaa accggttttt tcgccgctaa tggcgcgaac
     7621 gccaacgccc tggtcgatat tatatgaacc atctttaatg atgcggtctt ctaaaaccca
     7681 ggattcgtga tagctcgact gaaaatagag gtcgccataa tcaagacggc gttcggccag
     7741 ttggcccaaa atagcgaaca gatcctgatg gttcaggcca ttcgccgcta gcaattgttc
     7801 acttaccagg ttcagactca tcgtttttgc tactcgttga tttctgccgg atggcggttc
     7861 acgccttatc cggactacgt tgttagattg tgcaaaccgg ataaacgcag cgccgtccgg
     7921 catgactatt tactgagagt ggggcaattc ctcgcccccg tcaaatcatt gctggctttc
     7981 ttttctcggt tggcgcagaa cttcgttgat ctgcggcgca tcgaccggac cggtaatgcg
     8041 ataacgcaga atggagacct tgctccatag cggccccaac actttactgg cggcaaatac
     8101 cgccgcgccg acaatcgggt taacggcaaa cgcggcagcg acgcccacgg tggcggaaat
     8161 ttccgccgcg acaacggcct ccatatcaag acgacgacgc accagatcaa cagaaccttt
     8221 cattgcaata tccgcttcca gcccatccac cagcgtatcg tcagtatgca ggacgccatc
     8281 tttaatccac gcggtactat gaatagagtc gaaatagaag ccctcgctaa aggtatctct
     8341 gaagtcaaac cgcagcttac gcagcaacgc atcaaaactg agcagccgca gtagctgtcc
     8401 ggcatgaccg ctactgagat cagtaaactc gcctttgccc agacgcgtac gtaaaatccc
     8461 gttgagcgtg gcttcctcag gttgccaggg cgggtttcgc cagtgcagat cgtaatctac
     8521 gttaaaagac gcgttctgga ttggcgtcga gatgccgaag aacccggcag ccgtgtcgag
     8581 gttactacca tgcagactac ctttcagcga ggttcgttca ttacccggcg cattcaccca
     8641 ctcgccgttc gctttcaaac gggcgaatcc ggtatcgatc aggccattcg ccagagtcag
     8701 cgtattgcct ttgatggcga aatcgccatc aatacgccca tatttttgcc cccatagcca
     8761 gcactcttcg cagcgaagct gtaagtccgg ccagccgcgg aagctaatcg tgttcgccga
     8821 agccaacggc gatgtcggcg ttggtgacga ggcgtgcgtt tttgcgacgc cagggttgta
     8881 gtacaggtac ttaatgttcg ccagccacgg cgcatggttg cgcatgagta gcgtggcgtt
     8941 cacctcacgg ccctgcgctt caatttttgt tccgttcagc gagggggctg aaacgacgct
     9001 caaattgttc cactgctggc cgcccagcga tagcgcggga gtacgcaacg tgacgcgttg
     9061 aggaaactcg gccgaactgc tcacgttatc cgccgcgcct ttctggaata acgccagcca
     9121 ttgcgcgcca tccagcgccg gcagattgag ctcaacgcct tgttgagcag gtaatggcgg
     9181 aatcgtccgg ctgtccgtcg tccagatagc ccgatccaac gtcagcttct gatttaataa
     9241 ccagcggctg ttaaagtgat ttttactccc tgcgctcccc gttagcgcaa aacttttcag
     9301 gttgccgtca gcctgaatgt tcaccggaat ggcttcgcct gcgggtttat ttagcggaga
     9361 aggtaagtga ctgctcacat ttctcagatc gccgttcagc tcgatgtgat aagtggtgtc
     9421 agcgtgatat ggaagatcga tgccgacttt accattccac gtcacgctgc cgctcagggc
     9481 gtcattcagt tgcggcggta agacgcccat acgcgttggc tgccagttac cgttcaggtt
     9541 gacggcgacc tgataggctt ttgccccttc cgtcgtactg aaatccaggt taagcggctg
     9601 attaaaccag tttgccgtca gtggcccgct ttttagcgcg ccattcacaa agctgaattt
     9661 accgttcaga tttttgagcg tgctgtttag cggcttaata aacagactgt tattacgcaa
     9721 cgagacatcg ccctcggcgg taacctgttc tccgtccagc ggaatatcaa gatgtaagcg
     9781 agcattcaca tcgccatcta attggagctc cgccagcgtc gagccaagcg agtcttttag
     9841 cggcgtctcg tcaaaataag gcccaacggc ttttcccggc ccgttaatat cggcatcaat
     9901 gagcagtttc tctttggaat aatccggaat cgccgccgcg agtttgctgg ccttcacccc
     9961 gcccaaatcg acgctatccg aacgcatcca caggccgtcg ttcaggaaat ccagttcaat
    10021 gttgagattt tttagcgccg gccagtcggg ttgaaaagca aacgtcgcat tgcgtagcgg
    10081 caccagcact tcaaactgac cttcgttatg cttataggga aagaggtgcg ggttaccacc
    10141 gtaaaccaac gtggcgttat ccgcctcgcc gccctgaatc gcgccgctaa ggtaatcgac
    10201 tagcgctttg cccatcaggt tttccggaaa atagcgccac gcctgagatc catcatcggt
    10261 actgattccg gccagaatac ccagccacgg ttcgtcgccc gtcggttgca gatagcggaa
    10321 cccgccgcgc gcatgtaccg cctttgcttt gacgtcaatg tcgcggccat caagctgaaa
    10381 gccgttctca ttcttcaacc agctaagcgt cgcgacgccg ttttcaattt ccagcggcgc
    10441 gcgaaaaacg gtttcatagg gcatcttagc ctgctgcatc gcaaccttca tctgcccgtc
    10501 ttctacgctt cccgccagcg taccggaaaa atgttccgcg ccgggcaaca gcttccactg
    10561 tttccaggca agattttccc acgatgcctg aaaacgcgtt ttttcggtcg cctgtagcgg
    10621 aatatccagc gccagtgtgg cgatctttcc gctcggctgc gtagcctgcc atatttcgcc
    10681 cagcacaggc gacagtttag ccgccagcgg acgtaatgct tccagccccg ccagttcaag
    10741 attactggcg cgaatgcgta gctcatcgct acgtgtgtga ttctcgccgc cgacgtcctg
    10801 ctgcgggagc caggccacgg ttaaggctcc gctcggccag ggtttgccat caagcgtaat
    10861 ccgtgtgtcc ggaatataaa actgccagcc cggctgctcg cggctaatct gcgccgtcag
    10921 gttatcgaca gacaacgtat gcgtcgtgtt atcgcccagc cagcttgcgc cgccctgttt
    10981 cagccagacg tcccctccgg cgatttcgcc tttactgagc gtcatccagc cttccagact
    11041 gaaacgcgcc gtctggagcg ccacattatc ctgcatccat ttgcccagcc acggcttgac
    11101 gtcaatatcg tcggcctgta accagactct gccgttattt agcagaccgt cgtcatcgcg
    11161 taaatccatc cgcacctgca tcacgccgtg ctgcccggtc aggctggaga ggctgacctc
    11221 gccttcggct cggtgccgct ctttgccgtt tagccaggta agttgtggga tcgccagttc
    11281 cgcgcgttgt cctgaaagcg tcagaaaact gatttggcta tcgcgcagat cgaaatgatc
    11341 gaactgccgc aggaaaagat cgcttaaacg gctggtttcg atgccttcgc cgtcgctgct
    11401 ttgaagaggc gtgttggtgc ggaaattgag ttgccagaag gtcaggtcgc gaaactgcca
    11461 gcgcatgtgc aacaggcttt gccagacgtc cagcgccagc gtaacgcgtt ttatcgacag
    11521 ctcgccgcca tctttcaggg cggcatgaat attatgcgct tccagcgtag ggccaaaatt
    11581 ttgccagctt gcggagagtt ggctggcggc caccggcacg ccggtcacgg actcaatttt
    11641 attcaggata gctggacgcc aggcgtcaag atgaggcaac gccaggcgca gcccgctaac
    11701 cagcagcgct gcaatgacga tgagcgcggc tccagtgagc aataaaatcc ccggcaatcg
    11761 cctcacgcgt ctctccttgt ctgccaaaaa atacgactca ccccccttga gggtatattg
    11821 ccggatggcg gcgcttgcgc cttatccggc ctacatgcgc tggtgctatt actcaattac
    11881 atcattacga cgtcaaactg ctcctggtta taaagcggtt cgacctgaac tttaacctgt
    11941 ttgccgacaa agatttcgac ttccgccagc gcgtgtgatt cttcgccttt cagcgcttcc
    12001 gccaccgcag gagaagcata aaccaggaag cgatcggagt cataagcgtg atgaacacgt
    12061 acaatttcac gcatgatctc atagcagacg gtttccaccg tttttaccgt cccgcggcca
    12121 tgacaggttg gacactcgtt acaaagcaca tgttccacgc tttcacgggt ccgtttacgg
    12181 gtcatttcca ccagtcccag cggcgaaaaa ccgttaatac tggttttcac gcgatcctta
    12241 cttaacgcct gttccagcga atgcagcacc cggcggcgat gatcttcatt attcatgtcg
    12301 ataaaatcga taatgataat gccgcccaga ttacgcaggc gtagctggcg ggcaatggcc
    12361 tgcgtcgctt caatattggt attaaaaatg gtgtcgtcga gattacggtg tccgacaaac
    12421 gcgccggtat tgatatctac cgtcgtcatc gcttcggttt ggtcgataat cagataaccg
    12481 ccagacttga gttcaacttt acgctccagc gcgcgctgga tttcattttc cacgtcataa
    12541 agatcgaaga tcggctgatg gccactgtaa tgctccagct tactggtcat ttccgggatg
    12601 tattctgcgg taaactccag cagcgactca taggtcagac gtgagtcgac gcgaattcgg
    12661 tccaactgcg catcggcgaa atcgcgcagc acgcgctgcg ccagcgccag ttcgccatac
    12721 atctggtagc gcgtttgcgg acgctttttg cgctccatga ctttcgtcca gacgcgcttg
    12781 agataggcgg cgtcagacgc gagatcctct tcacacacgc cttccgccgc ggtacggata
    12841 ataaacccgc cctgttcgtc gcagtattcc gccaccacct ttttcaggcg ctcgcgttca
    12901 ctttcgcttt cgatgcgctg ggaaacgcca acgtgtgacg cgccgggcat aaaaacaagg
    12961 taacgggagg gcaacgtgat gtccgtggtc aaacgcgcgc ctttcgtgcc gagcggatct
    13021 ttcactacct gcaccatcag atcctgtccc tgacgcacca gttcggagat atcgcgcacg
    13081 gtaaactgtt tttgctcgtc gcccgccacg cattcggtat gcggcataat gtcggaagcg
    13141 tgaagaaatg cggctttatc cagcccaata tctacaaaag ccgcctgcat acctggaagt
    13201 acacgactta cacgaccttt gtagatattg cctacgattc cgcgtcgcgc ttcgcgctca
    13261 atatggattt cctgaagaat accgccatca atgtacgcca cgcgcgtttc cgatggcgtt
    13321 acgtttacca acaattcagc cgtcatgttt atccctttta tcacgcagtg cgttaaaatg
    13381 actcaacaac tcatacgttt caaccagcgg taagccgacc acggcgtgat agctgccatt
    13441 tatcttcctg acaaaacagc caccccgccc ctgaataccg tatgcacctg ctttatctaa
    13501 aggctcgccg ctggcgacat agccagtaat atcctgcgca gaaagcgtgc ggaaagtcac
    13561 ctccgttacc accagacaat ccagcgtctg ctgcgagtcc gcaagcgcaa cagcagtcat
    13621 cacctgatgc gtatttccgg aaagcaaacg cagcatttct gcggcatgag cggcgtcgcg
    13681 cggcttttcc agcacctcgc cgtttaacac gactatcgta tccgcgccca acaccggcag
    13741 atcacgggga accagcgcca cgccagcctg cgccttttcg cgcgccagcc gaacaacata
    13801 ctgctgcgcg ctttcctgaa cacgccgttg ctcttcaata ccaggcacga cctgctcgaa
    13861 tgaaaatcca agttgaatca ataattcctg gcgacgcggg gaaccggaag caagatacag
    13921 agttgtcata tcgaccttta ttgcacagca aactgctggc gtactttacg catcagcaaa
    13981 aagagccagg gccacagcac gccattgact acactactcc agaacacttc cggtctgaaa
    14041 gagacgttga tcactaaaaa ctcggcccag aaaacaataa tgtccacggc cagtgaaagc
    14101 aacattacca ccagcgcctg ctgccagagc gccaggttac ggaagagctg gaatttcaga
    14161 gcgaccagat aggcgacaat gctcatcgac agagcgcgca cgccaagtgt ggaaccgctg
    14221 atgagatcaa gtatggcacc catcacaaat cccgtcccca catttacgcg gtgcggcagg
    14281 gccagaatcc agtacagtaa gatgagcaaa acccagtttg gccggaaaac aatgatgtcg
    14341 tccggccagg gcatgatttg cagcaacagc gcaataagaa acgagagcca gataacccag
    14401 cgcccctggc tacgatagct cgccaccatt accctcccgg cgcacgcgca gacggcgtgg
    14461 tcgcgcccga aggcgatgat tgcgttgata ccggcgtagt ctggcccgca gatggctgag
    14521 taatccccgt cgccgggtcc ggcactggcg ccggcggccc catcgcatcc ggagaaggta
    14581 acacctgcgg catcatctgc atcaggcgct cattggcgac gcggtgaacc tcttccggcg
    14641 tcatcggatt ggcgccgtta cgatcggctc cccacaacag cagcagatag cgtaaacgct
    14701 gcaaacccgc ggttggacga gcctgaatga cggtataggc gcgctgagtg tccagcttga
    14761 cggaggagac caccgccacc ggataccctt ccgggaaacg cccaccaagt ccggacgtta
    14821 ccagcacatc gccaacgcga atatcggtat tggcgggcag atgttcaagc tgaagatcgt
    14881 cagtgcagcc gttaccggcg gcaatcacgc ggatgtcatt gcgtagtacc tgaatcggca
    14941 gagcatgagt cgcatcgcaa atcagcaata cgcggctggt cagtttcgcc acggcgacaa
    15001 cctgccctac gacacctttg tcgctaatga ccggttgacc ttcatatacg ccattaacgc
    15061 tgcctttatc gataacgacc tgatcgctgt aaggatcgtt aaccgttgaa ataacctgcg
    15121 tcaccatttt ctgctcgtcc tgacgcagcg gcgaccccag cagctcgcgc aaccgcgcgt
    15181 tctcctgttt gtactgcccc agcatcagca ggtcgctgtt ttttagcagt aattcctggc
    15241 gcagcgcccg gttttccagc tcaagctggt cgcgagaagc cagcgtttgc gacacgctgt
    15301 cgagcagttc acgagggccg tttgaaataa aatagaaagg actgacggca gtgtccatgt
    15361 acgttcggat ttgactgaac gtccccaggc ggctgtcggc aatgataacg ccgagcgcca
    15421 ccagcaccgc cagaataagg cgaatctgta gcgacgggcc acggctaaaa attggcttca
    15481 taggctatgc gtattctcgc gtcggagagg caggacaatc cagggataat cctgcccgta
    15541 tccaactact cttcgctgaa caggtcgccg ccgtgcatat cgatcatttc cagcgccttg
    15601 ccgccgccgc gcgccacaca ggtcagcgga tcttcagcaa ccacgacagg aatgcccgtc
    15661 tcttccatta acagacggtc aaggttacgc agcagcgcgc cgccgccggt gagcaccata
    15721 ccgcgctcgg agatgtctga cgccagctcc ggcggacact gttccagcgc caccattacc
    15781 gcgctgacga taccggtcaa cggttcctgc aacgcttcca gaatctcgtt tgagttcagg
    15841 gtaaagccgc gtggaacgcc ttccgccagg ttacggccac gcacttcgat ctcgcggact
    15901 tcgtcgcccg gataagcgga accgatttcg tgtttaatac gttctgcggt ggcttcacca
    15961 atcagagaac cgtagttacg acgaacgtaa ttaatgatgg cttcgtcgaa gcggtcacca
    16021 ccaatacgga cagaagaaga gtaaaccacg ccgttcaggg agatcacggc aacttcagtg
    16081 gtaccaccac cgatatccac aaccattgaa ccggttgctt cagaaactgg cagacctgcg
    16141 ccgatcgcgg ccgccatcgg ctcttcgatc aaaaagactt cacgggcgcc tgcgccctga
    16201 gcggattcac gaatcgcgcg gcgttctacc tgcgtcgcgc cgaccggcac gcataccagt
    16261 acgcgcgggc ttgggcgcat aaagctgttg ctgtgcactt gtttaataaa gtgctggagc
    16321 attttttcgg tcacaaagaa gtcagcgata acgccatctt tcatcggacg gatcgcagcg
    16381 atattgcccg gcgtacggcc cagcatctgc ttcgcatcat gaccgactgc agccacgctt
    16441 ttcggcgaac cggcacgatc ctgacgaatg gccacaacgg aaggctcatt caatacgatg
    16501 ccttgtcctt ttacataaat gagggtattc gcggtaccca ggtcaatgga caggtcattg
    16561 gaaaacatgc cacgaaattt tttcaacata ctaagggata atcctgaaag ctggggcgga
    16621 aaacaaaatc cgcttacttt accaaccaca cgcagcagcg acaaggcgca aaaatcatct
    16681 gctacggtga aaattagtgc agttcgtttc ctttgttaca aatctcggcc tgagtccctc
    16741 agggctgaaa aaatcagcag caatcctcgc cttcgtttgc aacctgtcaa aggtcattca
    16801 cctgcatatt tgctgcaaca atctggcgag cagacaagca cacccccatg aggcgcagcg
    16861 cgcgttattc tacgtgaaaa caaattaaac ggcaggttaa accgagtatc tttgcgaata
    16921 ttttttcacg tttgtgtcaa gtagttggga ggaggcaaaa aaatcaccct gcccgccagc
    16981 cacgccgcgt tttgtcagcg tctgccactc gccgcgcgaa cggacgcccg tcgcgtaaac
    17041 ctgcgtaggc gtgcccgcgc aggcctctac cagactttga accagaagct ggttttccgt
    17101 tcgcttctca atgtttctga ccagactcgg atgcagcttg agtaattcca cattgagcgc
    17161 tttaatccag ctcgtgctaa ccagcgtcaa acccgcctgt gtcaccgcca cccgaacgcc
    17221 aagcgcattg actaagcgaa ggatgggttg taaccggctg atgtgttgac aaacatctgc
    17281 ctccgcaagt tcaataatta tgcgatttcg ctgtgatttt tcacactgca ttaacgtatc
    17341 gcgcaaccag cgctgaaaac gcggacgaat cagcgactca accgtcaact gcattgccag
    17401 attttcatcc ggccagtagc ccagcaacgt aatcaggcgg ctaatttgta atctgtcata
    17461 ctcttccgat aaaccaaatt gcaacaccat cggcatatac tccgccgagc tcacctcttc
    17521 tttaccgtca tagatgcgac acatcaattc ccgatgatgt acgcgacctt ctcgcgtgac
    17581 cgccggtttt tgataaagtc gcggtccgcc ccggttcagc atctgctcaa tcaatgtgcg
    17641 ccagcgcaca ttgccgcgcc ctttttccgg cagagtgtcg tcgtagatag cccagctatt
    17701 tcccccctgc agggcggcat tccgcgccgc ggcttcagca tgttccatca cctgatcggt
    17761 ggactgtccg ctgcgccagg cgcaaatgcc gatatgtacc atatcgtcac gatcgagcat
    17821 tttgttagcc ggtagcgcat cgacagcttt taaaagttgt ccggcaatac tttccgcttc
    17881 tttcagcgtt cgatgcggta gcagcacggc aaagtcgctg cggtgataac gcgccagcag
    17941 cgagcctggg taacgcataa tgaatgtcga tagcagattg ataagcataa acatctgctc
    18001 ttccgcctga ttgcctccca ggctgtcgcg cagaagattg aagtctggca agcggatcat
    18061 catcaccacg ccatgcactc ccactttttc ctgatcttcc agcagcgtcg ccagctggtt
    18121 atcaaagaac agacggttac cgagtccggt tttggtgtcc tgcgcggcgt aggagcgaat
    18181 gagggtgtcc aggcgactac gctgttcgtg agcaaactga atttcggaaa gcaatacatc
    18241 aagcgcgcta ctggtgcgcg ctggccattc gtaaacagaa ccgcggacat tcgccccgcg
    18301 ttcgccgttc agaatacgcg ttgagcgaat ttccagaagc tcctgcccgg aaagctgccg
    18361 ctgcagccag cgcaccgata aaaacaaaat cagaacgata aaaccgatcg ccagcgtcag
    18421 cggcgccgtg gtgatcagtg agtgaaaata attacccatc gggtcctgat aaaccagacg
    18481 tagcgacatt cctggatgtt ttatcagcgg tacgaccagc tcgcgataca tgtcgctggt
    18541 gccggctggc cgataacctc tggcgcgaga atggctgtag acgctgcgct ccccctgcaa
    18601 cagatcgaca cgcacaatat cggaagcgat catgagctcg tcgatttgcg gcgtcagcga
    18661 gacaatatca tgggtcacca ggtgcgtatc aatggctgtt gccgtcgcct gcacacggct
    18721 gacatactta tactgtacgg cgttataaaa gcttagcgag caacctatca gagtcacgaa
    18781 gatcgttaat cccgtgagca gcgtgataaa agctgagaat ttcgtcgtta atcgcatcct
    18841 tgagttaact ccgacggtta taaacagtat gaaaaagcga atctgaaggc ggaattcgcc
    18901 acggcgcgca atgaagcagg catactacca aaatggatct atctggcaat ttattgcgtt
    18961 gcatcggcat cacgttttaa ttagcgagta tagtcttcgt agctattttt ccaatctacc
    19021 atgtaaagtg aggacaggtt atgcaggcgt tgatcttaga acagcaggac ggtaaaaccc
    19081 tcgcatccgt gcaacatctc gaagagagtc aactgccggc aggtgatgtg acggtggatg
    19141 tccactggtc cagcctgaat tataaagatg ctctggctat caccggaaaa gggaaaatta
    19201 tccgtcattt tccgatgatt cctggtattg atttcgccgg caccgttcac gcaagcgaag
    19261 atcctcgctt tcatgcaggc caggaagtac tactgactgg ctggggcgtg ggcgaaaacc
    19321 actggggcgg cctggccgaa cgcgcacgcg ttaaaggcga ctggctggtc gcgctgcctg
    19381 cgggactgag cagccgtaac gccatgatca tcggcaccgc cggttttacc gccatgctgt
    19441 gcgtcatggc gcttgaagat gcaggtattc gcccgcaaga cggtgaggtt gtcgtcaccg
    19501 gcgccagcgg cggtgtgggc agcactgccg ttgcattact gcataagctg ggctatcagg
    19561 ttgcagcagt atcaggacgt gaaagcaccc acggctatct taagagcctg ggagctaacc
    19621 gtattctcag ccgcgatgag tttgctgaat ctcgcccgtt ggaaaaacag ctgtgggccg
    19681 gtgcaattga taccgttggc gataaagtgc tggcgaaagt cctggcacag atgaactatg
    19741 gcggttgcgt ggccgcctgc ggcctggcgg gcggcttcgc gctgccgacc accgttatgc
    19801 cattcattct gcgtaatgtg cgtttgcaag gggtggactc ggtgatgacc ccaccggcac
    19861 gtcgcgcaga agcctgggcg cgtttggtta aggatctgcc ggaatcgttc tatgctcagg
    19921 ccgccacaga gattacgctg gcggatgcgc cgaagttcgc cgatgccatc atcaataatc
    19981 ag
//
LOCUS       DAJVSD010000061        19778 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.061, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000061 DAJVSD010000000
VERSION     DAJVSD010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 19778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19778
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.061"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(126..1172)
                     /gene="pyrC"
                     /locus_tag="OQP62_001799"
     CDS             complement(126..1172)
                     /gene="pyrC"
                     /locus_tag="OQP62_001799"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HCS1721372.1"
                     /translation="MTAPSQVLKIRRPDDWHVHLRDGDMLKTVVPYTSEIYGRAIVMP
                     NLASPITTVDAAIAYRQRILDAVPAGHDFTPLMTCYLTDSLDADELERGFHEGVFTAA
                     KLYPANATTNSSHGVTSVDAIMPVLERMEKLGMPLLVHGEVTHADVDIFDREARFIDT
                     VMEPLRQRLTALKVVFEHITTKDAAQYVRDGSYNLAATITPQHLMFNRNDMLVGGIRP
                     HLYCLPILKRNIHQQALRDLVASGFTRAFLGTDSAPHSRHRKETRCGCAGCFNAPSAL
                     GSYAAVFEEMNALAHFEAFCSLNGPQFYGLPVNTGWVELVRDEQQIPENIALADDSLV
                     PFLAGETVRWSVKK"
     gene            complement(1276..1875)
                     /locus_tag="OQP62_001800"
     CDS             complement(1276..1875)
                     /locus_tag="OQP62_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1721373.1"
                     /translation="MSRLGHRQHAKERHEKVFFAAALVVSGLLVGCNQLTQYTISEQE
                     INQALEKRNNFSKDIGLPGIADAHIVLTNLASQIGREEPNKVTLTGDARLDMNSLFGS
                     QKATMKLKLKALPVFDKEKGAIYLQEMEVVDATVTPEKMQSVLQTLLPYLNQSLRSYF
                     NQRPAYVLREDSSKGEALAKKLAKGIEVKPGEIVIPFTN"
     gene            complement(1960..2607)
                     /gene="grxB"
                     /locus_tag="OQP62_001801"
     CDS             complement(1960..2607)
                     /gene="grxB"
                     /locus_tag="OQP62_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 2"
                     /protein_id="HCS1721374.1"
                     /translation="MKLYIYDHCPFCVKARMIFGLKNIPVELNVLQNDDEATPTRMIG
                     QKMVPILQKDDSRYLPESMDIVHYVDNLDGKPLLTGKRNPAIEEWLRKVNGYVNQLLL
                     PRFAKSAFDEFSTPAARQYFIRKKEASSGSFDNHLAHSAGLIKKIGDDLRLLDKLIVQ
                     PNAVNGELSEDDIHLFPLLRNLTLVAGIHWPTKVADYRDNMAKQTQINLLSSMAI"
     gene            complement(2671..3879)
                     /gene="mdtH"
                     /locus_tag="OQP62_001802"
     CDS             complement(2671..3879)
                     /gene="mdtH"
                     /locus_tag="OQP62_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtH"
                     /protein_id="HCS1721375.1"
                     /translation="MSRVSQARNLGKYFLLIDNMLVVLGFFVVFPLISIRFVDQMGWA
                     AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMGIAHEPWLL
                     WFSCFLSGLGGTLFDPPRSALVVKLIRPEQRGRFFSLLMMQDSAGAVIGALLGSWLLQ
                     YDFRLVCATGAILFILCALFNAWLLPAWKLSTARTPVREGMRRVMSNKRFVTYVLTLA
                     GYYMLAVQVMLMLPIMVNDIAGSPAAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHR
                     LMAGLLVMSLSMLPIGMVGNLQQLFTLICAFYIGSVIAEPARETLSASPADARARGSY
                     MGFSRLGLAIGGAISYIGGGWLFDMGKALAQPELPWMMLGIIGFITFLALGWQFSHKR
                     TPRRMLEPGA"
     gene            4116..4700
                     /gene="rimJ"
                     /locus_tag="OQP62_001803"
     CDS             4116..4700
                     /gene="rimJ"
                     /locus_tag="OQP62_001803"
                     /EC_number="2.3.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S5-alanine
                     N-acetyltransferase"
                     /protein_id="HCS1721376.1"
                     /translation="MFGYRSNVPKVRLTTDRLVVRLVHERDAWRLADYYAENRHFLKP
                     WEPVRDESHCYPSGWQARLGMIGEFHKQGSAFYFALLDPEEKEIIGVANFSNVVRGSF
                     HACYLGYSIAQEWQGQGLMFEALTAAIRYMQRTQHIHRIMANYMPHNKRSGALLARLG
                     FEKEGYAKDYLLIDGQWRDHVLTALTTPLWTPGR"
     gene            4736..5383
                     /locus_tag="OQP62_001804"
     CDS             4736..5383
                     /locus_tag="OQP62_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceH family protein"
                     /protein_id="HCS1721377.1"
                     /translation="MKYELTATEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNR
                     EPVMNLTEQEVQEQLDNLVKRHFLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVAL
                     VTTLLLRGAQTPGELRSRASRMHEFSDMAEVESTLERLASREDGPYVVRLAREPGKRE
                     SRYMHLFCGDVDELSLQTSAPESASGDLQSRVEALESEVAELKQRLDSLLAHLGE"
     gene            5385..6308
                     /locus_tag="OQP62_001805"
     CDS             5385..6308
                     /locus_tag="OQP62_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HCS1721378.1"
                     /translation="MRTLRIGIVVLGGIAQKAWLPVLTNTAGWTLQGAWSPSRDKALR
                     ICESWRIPYVDSLANLASGCDAVFVHSSTASHYAVVSELLNAGVHVCVDKPLAENLRD
                     AERLVALAAQKKLTLMVGFNRRFAPLYRELKTRLGTAASLRMDKHRTDSIGPHDLRFT
                     LLDDYLHVVDTVLWLAGGEARLASGTLLTSESGEMCYAEHHFSADKLQITTSMHRRAG
                     SQRESVQAVTDGGLYDVTDMREWREERGQGILIKPIPGWQTTLEQRGFVGCARHFIDC
                     VQNQTVPETAGEQAILAQRVVEALWRDAISE"
     gene            6612..8147
                     /gene="murJ"
                     /locus_tag="OQP62_001806"
     CDS             6612..8147
                     /gene="murJ"
                     /locus_tag="OQP62_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HCS1721379.1"
                     /translation="MNLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVA
                     FKLPNLLRRIFAEGAFSQAFVPILAEYKSKQGEEATRIFVAYVSGLLTLALAVVTVAG
                     MLAAPWVIMVTAPGFADTADKFALTTQLLRITFPYILLISLASLVGAILNTWNRFSIP
                     AFAPTFLNISMIGFALFAAPYFNPPVLALAWAVTVGGVLQLVYQLPYLKKIGMLVLPR
                     INFHDTGAMRVVKQMGPAILGVSVSQISLIINTIFASFLASGSVSWLYYADRLMEFPS
                     GVLGVALGTILLPSLSKSFASGNHDEYCRLMDWGLRLCFLLALPSAVALGILAKPLTV
                     SLFQYGKFTAFDAAMTQRALIAYSVGLIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLI
                     MTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQNIFTPQPGWMWFLMRLII
                     SVLVMAAVLFGVLHIMPEWSQGSMLWRLLRLMAVVIAGIAAYFAALAVLGFKVKEFVR
                     RTA"
     gene            complement(8229..8651)
                     /gene="flgN"
                     /locus_tag="OQP62_001807"
     CDS             complement(8229..8651)
                     /gene="flgN"
                     /locus_tag="OQP62_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis chaperone FlgN"
                     /protein_id="HCS1721380.1"
                     /translation="MTRLSEILDQMTTVLNDLKTVMDAEQQQLSVGQINGSQLQRITE
                     EKSSLLATLDYLEQQRRLEQNAQRSANDDIAERWQAITEKTQHLRDLNQHNGWLLEGQ
                     IERNQQALEVLKPHQEPTLYGADGQTSVSHRGGKKISI"
     gene            complement(8656..8949)
                     /gene="flgM"
                     /locus_tag="OQP62_001808"
     CDS             complement(8656..8949)
                     /gene="flgM"
                     /locus_tag="OQP62_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-28 factor FlgM"
                     /protein_id="HCS1721381.1"
                     /translation="MSIDRTSPLKPVSTVQTRETSDTPVQKTRQEKTSAATSASVTLS
                     DAQAKLMQPGVSDINMERVEALKTAIRNGELKMDTGKIADSLIREAQSYLQNK"
     gene            complement(9041..9700)
                     /gene="flgA"
                     /locus_tag="OQP62_001809"
     CDS             complement(9041..9700)
                     /gene="flgA"
                     /locus_tag="OQP62_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HCS1721382.1"
                     /translation="MQTLKRGFAVAALLFSPLTMAQDINAQLTTWFSQRLAGFSDEVV
                     VTLRSPPNLLPSCEQPAFSMTGSAKLWGNVNVVARCANEKRYLQVNVQATGNYVAVAA
                     PVARGGKLTPANVTLKRGRLDQLPPRTVLDIRQIQDAVSLRDLAPGQPVQLTMIRQAW
                     RVKAGQRVQVIANGEGFSVNAEGQAMNNAAVAQNARVRMTSGQIVSGTVDSDGNILIN
                     L"
     gene            9857..10273
                     /gene="flgB"
                     /locus_tag="OQP62_001810"
     CDS             9857..10273
                     /gene="flgB"
                     /locus_tag="OQP62_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HCS1721383.1"
                     /translation="MLDRLDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDID
                     FASELKKVMVRGREETGGVALSLTSSRHIPAQAVSSPAVDLLYRVPDQPSLDGNTVDM
                     DRERTQFADNSLKYQMGLTVLGSQLKGMMNVLQGGN"
     gene            10277..10681
                     /gene="flgC"
                     /locus_tag="OQP62_001811"
     CDS             10277..10681
                     /gene="flgC"
                     /locus_tag="OQP62_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HCS1721384.1"
                     /translation="MALLNIFDIAGSALAAQSKRLNVAASNLANADSVTGPDGQPYRA
                     KQVVFQVDAAPGQATGGVKVASVIESQAPEKLVYEPGNPLADANGYVKMPNVDVVGEM
                     VNTMSASRSYQANIEVLNTVKSMMLKTLTLGQ"
     gene            10693..11391
                     /gene="flgD"
                     /locus_tag="OQP62_001812"
     CDS             10693..11391
                     /gene="flgD"
                     /locus_tag="OQP62_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook assembly protein FlgD"
                     /protein_id="HCS1721385.1"
                     /translation="MSIAVNMNDPTNTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQL
                     KNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGAISGQIDNSQSLQATTLIGHGVM
                     VPGTTILAGKGAEEGAVTSTTPFGVELQQPADKVTATITDKDGRVVRTLEIGELRAGV
                     HTFTWDGKQTDGTTVPNGSYNIAITASNGGTQLVAQPLQFALVQGVTKGSNGNLLDLG
                     TYGTTTLDEVRQII"
     gene            11418..12629
                     /gene="flgE"
                     /locus_tag="OQP62_001813"
     CDS             11418..12629
                     /gene="flgE"
                     /locus_tag="OQP62_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HCS1721386.1"
                     /translation="MSFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFA
                     GSKVGLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKL
                     DENRNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQINLNS
                     TDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDP
                     AATAPTTASTTLKFNENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNI
                     VATNQNGYKPGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVW
                     AATQASGVALLGTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQ
                     DQILNTLVNLR"
     gene            12650..13405
                     /locus_tag="OQP62_001814"
     CDS             12650..13405
                     /locus_tag="OQP62_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgF"
                     /protein_id="HCS1721387.1"
                     /translation="MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV
                     PVDGLSLATRTLVTASTPGADMTQGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRN
                     GNIQVGPTGQLTIQGHPVIGEGGPITVPEGSEITIAADGTISALNPGDPPNTVAPVGR
                     LKLVKAEGNEVQRSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMT
                     DMIANARRFEMQMKVITSVDENEGRANQLLSMS"
     gene            13419..14201
                     /gene="flgG"
                     /locus_tag="OQP62_001815"
     CDS             13419..14201
                     /gene="flgG"
                     /locus_tag="OQP62_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006819466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HCS1721388.1"
                     /translation="MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL
                     LYQTIRQPGAQSSEQTTLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGF
                     FQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVT
                     QQGQAAPVQVGQLNLTTFMNDTGLESIGENLYIETQSSGAPNESTPGLNGAGLLYQGY
                     VETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL"
     gene            14256..14954
                     /gene="flgH"
                     /locus_tag="OQP62_001816"
     CDS             14256..14954
                     /gene="flgH"
                     /locus_tag="OQP62_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HCS1721389.1"
                     /translation="MQKYALHAYPVMALMVATLTGCAWIPAKPLVQGATTAQPIPGPV
                     PVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKT
                     SFGFDTVPRYLQGLFGNSRADMEASGGNSFNGKGGANASNTFSGTLTVTVDQVLANGN
                     LHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNSVPSTQVADARIEYVGNGYINEAQN
                     MGWLQRFFLNLSPM"
     gene            14966..16063
                     /locus_tag="OQP62_001817"
     CDS             14966..16063
                     /locus_tag="OQP62_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HCS1721390.1"
                     /translation="MFKALAGIVLALVATLAHAERIRDLTSVQGVRENSLIGYGLVVG
                     LDGTGDQTTQTPFTTQTLNNMLSQLGITVPTGTNMQLKNVAAVMVTASYPPFARQGQT
                     IDVVVSSMGNAKSLRGGTLLMTPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQL
                     NGGRITNGAIIERELPTQFGAGNTINLQLNDEDFTMAQQITDAINRARGYGSATALDA
                     RTVQVRVPSGNSSQVRFLADIQNMEVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVA
                     QGNLSVTVNRQLNVNQPNTPFGGGQTVVTPQTQIDLRQSGGSLQSVRSSANLNSVVRA
                     LNALGATPMDLMSILQSMQSAGCLRAKLEII"
     gene            16063..17013
                     /gene="flgJ"
                     /locus_tag="OQP62_001818"
     CDS             16063..17013
                     /gene="flgJ"
                     /locus_tag="OQP62_001818"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly peptidoglycan hydrolase FlgJ"
                     /protein_id="HCS1721391.1"
                     /translation="MIGDGKLLASAAWDAQSLNELKAKAGQDPAANIRPVARQVEGMF
                     VQMMLKSMREALPKDGLFSSDQTRLYTSMYDQQIAQQMTAGKGLGLADMMVKQMTGGQ
                     TMPADDAPQVPLKFSLETVNSYQNQALTQLVRKAIPKTPDSSDAPLSGDSKDFLARLS
                     LPARLASEQSGVPHHLILAQAALESGWGQRQILRENGEPSYNVFGVKATASWKGPVTE
                     ITTTEYENGEAKKVKAKFRVYSSYLEALSDYVALLTRNPRYAAVTTAATAEQGAVALQ
                     NAGYATDPNYARKLASMIQQLKAMSEKVSKTYSANLDNLF"
     gene            17078..18739
                     /gene="flgK"
                     /locus_tag="OQP62_001819"
     CDS             17078..18739
                     /gene="flgK"
                     /locus_tag="OQP62_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HCS1721392.1"
                     /translation="MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQA
                     NSTLGAGGWIGNGVYVSGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADK
                     SSSLSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNI
                     AIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVS
                     VQDGGTYNLTMANGYTLVQGSTARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLN
                     TGSLGGLLTFRSQDLDQTRNTLGQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPV
                     VYSNSNNADKTVSLTAKVVDSTKVQATDYKIVFDGTDWQVTRTADNTTFTATKDADGK
                     LEIDGLKVTVGTGAQKNDSFLLKPVSNAIVDMNVKVTNEAEIAMASESKLDPDVDTGD
                     SDNRNGQALLDLQNSNVVGGNKTFNDAYATLVSDVGNKTSTLKTSSTTQANVVKQLYK
                     QQQSVSGVNLDEEYGNLQRYQQYYLANAQVLQTANALFDALLNIR"
     gene            18754..19707
                     /gene="flgL"
                     /locus_tag="OQP62_001820"
     CDS             18754..19707
                     /gene="flgL"
                     /locus_tag="OQP62_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HCS1721393.1"
                     /translation="MRISTQMMYEQNMSGITNSQAEWMKLGEQMSTGKRVTNPSDDPI
                     AASQAVVLFQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTL
                     SDDDRASLATDLQGIRDQLMNLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSV
                     TQQVDSARTMVIGHTGAQIFNSITSNAVPEPDGSDSEKNLFVMLDTAIAALKTPVEGN
                     DVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSLGSDRALGQKLQMS
                     NLVDVDWNSVISSYVMQQAALQASYKTFTDMQGMSLFQLNR"
BASE COUNT         4702 a         5123 c         5595 g         4358 t
ORIGIN      
        1 tcgcaccggc aggcagaggt gacgttttgg ctatagtgac ttcaatacgc ataatggccc
       61 cctgttgaat atactggata tatatacagt taaatccaat atatagcaac aggtaagcgc
      121 attttttatt tttttactga ccagcgtact gtttcacccg ctaaaaaagg caccagcgaa
      181 tcatcagcca gcgcgatatt ttccggtatc tgttgttcat cgcgaaccag ttccacccac
      241 cccgtattca ccggcaggcc atagaattgc gggccattca gtgaacagaa cgcttcaaag
      301 tgcgccagcg cgttcatttc ctcaaacacg gcggcataac tgccaagagc ggagggggcg
      361 ttgaaacaac cggcgcagcc gcaacgggtc tctttacgat gacgtgaatg cggcgctgaa
      421 tccgtcccca ggaaggcgcg cgtaaaacca ctggcgacca ggtcgcgtaa cgcctgctgg
      481 tgaatattgc gtttcagaat cggcagacag tacaggtgag gacgaatgcc gccaaccagc
      541 atatcattac ggttaaacat taaatgttga ggcgtaatgg tcgccgccag gttgtagctg
      601 ccgtcacgta catactgcgc ggcatctttg gttgtgatgt gttcaaagac cactttaagc
      661 gcggtcagac gctggcgtag cggttccatt acggtgtcga taaaacgcgc ttcgcgatcg
      721 aagatatcaa catccgcatg ggtcacctca ccgtggacca gcaatggcat tccgagtttt
      781 tccatccgct ccagtaccgg catgatagcg tcgactgacg ttacgccatg actggagtta
      841 gtggtggcat tggccgggta aagcttggcc gcagtaaaca cgccttcatg gaaaccacgc
      901 tccagttcat cggcatcgag cgaatccgtt aaatagcagg tcattaacgg cgtgaaatca
      961 tgcccggcgg gcaccgcatc gagaatacgc tggcggtagg cgatcgctgc atcaacggtc
     1021 gtaatggggg acgccaggtt cggcatcacg atagcgcgac cataaatttc gctggtatag
     1081 ggtacgaccg tttttaacat gtcgccatcg cgaaggtgaa cgtgccagtc gtccgggcgg
     1141 cggatcttta aaacctggga tggtgcagtc attaataagc tccggctgag gaatagtctt
     1201 tttgccggaa acaaaggata agcggaaacg ttttcgtttg cacgtaaaaa aagggcgcga
     1261 gcgcgccctc cgaaatcaat tggtgaaagg aataacgatt tcaccaggtt taacttcaat
     1321 gcctttcgcg agtttcttcg ctaacgcttc gcctttacta ctgtcctcac gcaacacgta
     1381 agcgggccgc tggttaaagt agctacgtaa agactgattt aaatagggca ggagcgtttg
     1441 tagcactgat tgcattttct ccggcgtcac ggtggcgtct actacttcca tctcctgaag
     1501 atagatggcg cctttttctt tatcaaagac cggcagggct tttagcttga gtttcatcgt
     1561 cgctttttga ctgccaaaca gggaattcat atccagcctg gcatcgccag taagggtgac
     1621 tttattaggc tcttcccgac caatctggct ggcaaggtta gtcaatacga tatgcgcgtc
     1681 ggcaatgcca ggcagaccaa tatcttttga gaaattattc cgtttttcaa gcgcttgatt
     1741 gatttcttgt tcgctaatgg tgtattgcgt aagttgatta caacccacta acaggccgct
     1801 aactaccagc gcagcggcaa aaaaaacttt ttcatggcgt tccttagcat gttgcctgtg
     1861 ccctaatctt gacacaaagc agcatgtcgc gccagcggac atggcgccac taaaaaaagc
     1921 tgaaaaaggc ggcaagaaag ggttgccgcc tggcgggcgt tagatagcca ttgaggagag
     1981 taaattaatt tgcgtctgct tagccatatt atcgcgatag tccgcgactt ttgtcggcca
     2041 gtgaataccg gcgaccagcg tcagattacg cagaagcgga aacagatgaa tatcatcttc
     2101 cgataattcg ccgttaacgg cgttaggctg tacgatgagt ttatccagca aacgtaaatc
     2161 atcgccgatc tttttaatca gtccggcaga gtgcgcaaga tggttgtcaa aactgccaga
     2221 tgaggcctct tttttgcgga taaaatactg gcgcgccgca ggggtagaaa attcatcgaa
     2281 agcggatttt gcaaatcgcg gcagcagtag ctgattaacg taaccgttaa ctttgcgcaa
     2341 ccactcttca atggctggat tacgtttccc ggttaacagc ggtttgccgt cgaggttgtc
     2401 gacataatgt acaatatcca tactttcagg aaggtagcga ctatcatctt tttgcaggat
     2461 gggcaccatc ttttgaccaa tcatccgggt gggcgtcgcc tcgtcgtcat tttgtaacac
     2521 gttaagttca acggggatgt tcttcaggcc gaaaatcatg cgggctttaa cgcagaaagg
     2581 gcaatgatcg taaatataaa gcttcacgtt tctcctccat ttgactgtcg gttcctgacc
     2641 agtatggagg agatagcgac aggtatcaaa tcaggcgccg ggttccagca tccggcgcgg
     2701 cgtgcgctta tgactaaatt gccagcctaa agccaaaaag gtgataaagc cgataatacc
     2761 gagcatcatc cacggtagtt caggctgcgc aagcgcttta cccatatcaa acaaccagcc
     2821 gccgccgata taactaatcg cgccgccaat ggctaatccc agacggctaa agcccatata
     2881 gcttccccgc gccctcgcgt ccgcgggcga cgcgctgagc gtttcgcgcg ccggttcggc
     2941 gataaccgag ccgatgtaga aagcgcaaat aagcgtaaaa agctgctgta aattgcccac
     3001 catcccgatg gggagcatgc tcagcgacat gacgagcaaa ccggccatca gccgatgctc
     3061 cagccgaaaa cgcttttcgc tccagcgggc aatcgggtag agcaacgtca gcgagagaca
     3121 cgcctcaata gcgtacatcc atttcacggc agcaggcgaa ccggcgatat cgtttaccat
     3181 aatcggcagc attaacatga cctgtaccgc cagcatatag tagcccgcca gcgtcagcac
     3241 gtaggtgaca aaccttttat tgctcatgac gcggcgcatt ccttcacgca ccggcgttct
     3301 ggccgttgat agcttccagg ccggaagcag ccatgcgttg aaaagggcgc ataatatgaa
     3361 caaaatagcg cccgtcgcgc agaccaggcg aaaatcgtat tgtagcaacc agcttcccag
     3421 cagcgcgcca atcaccgcgc ccgcgctgtc ctgcatcatc aacagagaga agaagcggcc
     3481 ccgttgctcc ggacgaatta atttgaccac cagcgctgaa cgcggcgggt cgaaaagcgt
     3541 accgccgaga ccggaaagaa agcaggaaaa ccacaagagc cagggctcat gcgcgatacc
     3601 catggtggca aagcctgcgg cgcgcatcag cataccggtg acaatcatcg gtttcgcgcc
     3661 aaagcgatcg gcgatggcgc cgccaaaaat gcccagacct tgttgaataa actgacgcag
     3721 gccgagcgcg atccctacca ttacggcagc ccaccccatt tgatcgacaa agcgaataga
     3781 gatgagcggg aagacgacga aaaaacccag caccactaac atgttatcga tgagaagaaa
     3841 atatttaccc aggttcctcg cctgcgagac gcgcgacatt tcccctcccg ggaaataaaa
     3901 gatgagcgtc ttctattctg cggcggcgtt tcgttttttc ctaccgttag cgggacaata
     3961 tttttttatc aaaagtcctt tttaatcgag agttttcatc aaaatgtggc agcaattcaa
     4021 aaaatgacga tttgcgcttt tcacagggcc tggttgcgca ggtatagtaa tgttactggc
     4081 gtgctgaaga cgttacagga aggagtaggt atagaatgtt tggctatcgc agtaacgtgc
     4141 caaaagtgcg cttaaccacc gatcgtctgg tggtacgttt agtgcatgag cgtgatgcct
     4201 ggcgtctggc cgattattac gcggaaaatc gtcatttttt aaaaccctgg gaaccggtcc
     4261 gtgatgaaag tcattgttat ccttcaggat ggcaggcgcg tctgggaatg atcggtgaat
     4321 ttcacaaaca gggctccgcc ttctatttcg cgctacttga tccggaagaa aaagaaatta
     4381 tcggcgtggc gaatttttcc aatgtggtgc gcggttcttt tcatgcctgt tatctgggct
     4441 attccattgc gcaagagtgg caggggcaag ggctgatgtt tgaagcctta accgctgcga
     4501 ttcgctatat gcagcgcact cagcatatcc accgtatcat ggcgaactat atgccgcaca
     4561 acaaacgtag cggcgcgttg ctggcgcggc ttggctttga aaaagaaggc tatgcgaaag
     4621 attacctgtt gattgatgga caatggcgcg accatgtcct gacggcgtta accacgccgt
     4681 tatggacgcc ggggcgttga gcggcttacg gaatgagagg caaagggaga aaacgatgaa
     4741 atatgaatta accgccactg aagcgcgagt gattggctgt ctgctggaaa agcaggtgac
     4801 aacgccggaa cagtatccgc tttccgtcaa cggggtggtg acagcctgta atcagaaaac
     4861 caaccgtgaa ccggtgatga acctgacgga acaagaggta caagaacagc tcgataacct
     4921 ggtgaaacgc cactttttgc gtacggtcag cgggtttggc aaccgcgtca ccaaatatga
     4981 acagcgcttc tgtaattccg aatttggcga tctgaaactt agcgcggcgg aagtggcgct
     5041 cgtcactacg ttgctgctgc gcggcgcgca aacgcccggc gagttgcgta gccgggcgtc
     5101 gcggatgcat gaattcagcg atatggcgga agttgaatcc acgctggaac ggcttgccag
     5161 tcgtgaggac ggcccgtatg tcgtccgtct ggcgcgtgaa ccgggtaagc gcgaaagccg
     5221 ctatatgcac cttttttgcg gcgacgtcga tgaactgtct ctccagacgt ctgcgccgga
     5281 aagtgcgtcg ggcgatcttc agtcgcgcgt cgaagcgctg gaaagcgaag tggcggagtt
     5341 aaagcagcgg ctggattctt tgttagctca cctgggagag taatgtgaga acattacgga
     5401 ttggcattgt cgtgttaggt ggtattgcgc agaaggcctg gctgccggta ttaaccaaca
     5461 ccgccggatg gacgttacag ggcgcctggt ctccttcgcg ggataaagcc ttacgtattt
     5521 gcgaaagctg gcgcataccg tatgtggatt cgctggcgaa tttagcgtcc ggctgcgatg
     5581 cggtcttcgt ccactccagt accgcaagcc attatgccgt ggtcagcgaa cttctcaacg
     5641 ctggcgtcca tgtctgcgtg gataaaccgc tggcggaaaa tctacgtgat gccgaacggc
     5701 tggtggcgct ggcggcgcaa aaaaaattga cgctgatggt tggctttaat cgccgtttcg
     5761 cgccgctgta ccgcgaactg aagacgcgcc tcggcactgc ggcgtcactg cgtatggata
     5821 aacatcgtac cgatagcatc gggccgcatg acttacgttt tactttgctc gatgactatc
     5881 tgcatgtcgt ggataccgtt ctgtggctgg cgggcggcga ggcgcgcctt gccagcggca
     5941 cgttgctcac cagcgagtcc ggcgaaatgt gctatgcgga acatcatttt tccgccgaca
     6001 aattacaaat taccaccagt atgcaccggc gcgccggaag tcagcgtgaa tcggtccagg
     6061 ccgtcaccga tggcgggctg tatgacgtga cggatatgcg tgaatggcgc gaagagcgcg
     6121 ggcagggtat tctcatcaaa cccattccgg gttggcaaac aacgcttgag cagcgtggtt
     6181 ttgtcggatg cgcgcggcat ttcattgact gcgtacaaaa tcagacggtt ccggaaacgg
     6241 cgggggagca ggcgattttg gcccagcgcg tcgtggaggc gctgtggcgg gacgccatca
     6301 gcgaataatc ctctgtaaca tctggcggta gtaattcatc gtaatccagg tactataccc
     6361 tcaataattc gagttgcaga aaagctaacg cacatgcagc tcgaagtatg gcgggtatat
     6421 atgcccactc tacataatac ctcttttcac agtgaataat ggcaaaccgt ggggagtctg
     6481 taaggcctga taagacgttt tgacgtcgcc gtcaggcgca gtgatacagc cggatacggc
     6541 agaagttgcg ttatccggtc gatggatcag ccatgcagga gttttacgcc agggtctgga
     6601 atacaaaaga aatgaattta ttgaaatcgc tggctgccgt cagctcgatg actatgtttt
     6661 cacgcgtgtt gggctttgcc cgtgatgcga ttgtcgccag aatttttggc gcagggatgg
     6721 cgaccgacgc cttttttgtg gcgtttaaac ttcccaatct actacgccgg atctttgccg
     6781 aaggcgcttt ttctcaggcc tttgtgccta tcctggcgga atataagagc aagcagggtg
     6841 aagaagcgac gcggatcttt gtcgcttacg tttccggcct gttgacgctg gcattggccg
     6901 tcgtgacggt ggccggtatg ctggccgccc cgtgggtgat tatggtaacc gcgccgggtt
     6961 ttgccgatac tgcggataaa tttgcgctga cgacgcaact gctgcggatt acgtttccct
     7021 atattctgct gatctcgctg gcttcactgg ttggcgccat tctcaacacc tggaatcgct
     7081 tctctattcc cgcttttgcg ccgacatttc ttaatatcag tatgatcggt tttgcattat
     7141 tcgccgcgcc atactttaat ccgccggtgc tggcgttagc ctgggcagtc accgtcggcg
     7201 gcgtgctgca actggtgtat caacttccgt atttgaaaaa gatcggtatg ctggtgctgc
     7261 cgcgcattaa ctttcacgac accggggcga tgcgggtggt caaacagatg gggccggcga
     7321 ttttgggcgt ttccgtcagt cagatctccc ttatcatcaa taccattttc gcctcgtttc
     7381 tggcctccgg ctcggtctca tggttgtact atgccgatcg gttgatggag ttcccgtccg
     7441 gcgtgctggg cgtggcgttg gggaccatcc tgttgccgtc attgtcgaaa agctttgcca
     7501 gcggcaatca tgatgagtac tgccgcctga tggactgggg gctgcgtttg tgctttttac
     7561 tggcgttgcc gagcgcggta gcgctaggca ttctggcgaa gccgctgacg gtctcgctgt
     7621 ttcagtacgg taaattcacc gcctttgatg cggcgatgac gcagcgggcg ttaatcgcct
     7681 attcggtggg gctgattggc ttgatcgtcg taaaagtgct ggccccgggc ttctattctc
     7741 gccaggatat taaaacgccg gtgaaaatcg ccatcgtgac gttaatcatg acgcagttaa
     7801 tgaacctggc gtttattgga ccgctgaaac acgccgggct gtcgctctct attggtctgg
     7861 cggcatgtct caatgcgtcg ctgctgtact ggcaactgcg caaacagaat atctttacgc
     7921 cacaaccggg gtggatgtgg ttcctgatgc gtctgatcat ttccgtactg gtaatggccg
     7981 ccgtgttgtt cggcgtgttg catattatgc cggagtggtc gcaagggtcg atgctatggc
     8041 gtttgctgcg tttgatggcg gtagtgatcg cgggtatcgc ggcctatttc gccgcgcttg
     8101 ccgtgctggg ctttaaagtg aaagagtttg ttcgccggac ggcgtaaatt cagtgcctga
     8161 tagcgctgtg ctatcaggcc tacaaggcat tcaggccgga aaggcgcaac gtcgccatcc
     8221 ggcaatgatt agatagatat ttttttaccg ccgcggtgag agacggaagt ctgaccgtca
     8281 gccccgtaca aggtcggctc ctggtgaggt ttcagcacct ccagcgcctg ttgattacgc
     8341 tcgatttgcc cttccagcag ccagccgttg tgctggttga ggtcgcgcag atgctgcgtt
     8401 ttttcggtaa tcgcctgcca gcgctctgca atgtcatcgt ttgcgctacg ctgcgcgttc
     8461 tgctccagac ggcgctgttg ttccagataa tccagcgtcg ccagcaacga gcttttttct
     8521 tctgtaatac gctgtagctg gctgccgtta atctggccta cggaaagctg ttgttgctcg
     8581 gcgtccatca ccgtcttcag gtcattcagg acggtggtca tctggtcaag tatttctgac
     8641 aaacgagtca tacgcttatt tattctgtaa gtagctctgc gcctcgcgaa tgagcgagtc
     8701 tgctattttt cccgtatcca tttttaactc accgttacgg atagccgttt ttaatgcttc
     8761 gacgcgttcc atattaatgt cgctgacgcc tggctgcata agcttcgctt gcgcgtcgct
     8821 taacgttacg ctggcgctcg tcgcggcgga cgttttttcc tgacgcgttt tttgtaccgg
     8881 cgtgtcgctg gtttcgcgcg tctggacagt gctaacgggt ttcaaaggtg aggtacggtc
     8941 aatgctcatt tatttatcct catcgagggt tacgttgtag cggccagcta ccatcatggt
     9001 tgaatatctc atcggcagcc gcgacaaaat ctttacacaa ttataggtta ataagaatat
     9061 tcccatcaga atcgacggtt ccactcacga tttgacccga tgtcatgcgc acgcgcgcat
     9121 tttgcgcgac ggcggcatta ttcatcgcct gaccttccgc attgacgcta aacccctcgc
     9181 cattggcgat gacctgtact cgttgacccg ctttgacacg ccaggcctga cgtatcatcg
     9241 taagctgtac cggctgcccg ggagcgagat cgcgcaaact gacggcatcc tgaatctgac
     9301 ggatatccag taccgtccgc ggcggtaact gatccagtct gccacgtttt agcgtgacgt
     9361 tggccggcgt caattttccg ccgcgcgcga cgggcgcggc tacggcgaca taattgccgg
     9421 tcgcttgcac attcacctgc aaataacgtt tttcattggc gcagcgcgcc accacattga
     9481 cgttgcccca cagcttcgcg ctgcccgtca tgctgaaggc tggctgctcg cagctcggta
     9541 gcagattggg cggtgaacgg agcgtgacaa ccacctcgtc gctgaagcca gccagacgct
     9601 gggaaaacca cgtggtcagc tgggcgttga tgtcctgcgc cattgtcagg gggctgaaca
     9661 gcaaagccgc cacggcgaat cctcgtttta acgtttgcat ggtacttccc cctggttgat
     9721 gtcatgacag gattctaccc gtgtgaagca agcatcaacg caataaatag cgacgcattt
     9781 tgcgtttatt ccggcgataa cgcgcgcgtg aaggcattta agctgtcggc tgaattttgc
     9841 catttgcgga ggagatatgc tcgacaggct cgatgccgcc ttacgatttc agcaggaagc
     9901 gctaaatctg cgcgcgcaac gtcaggaaat attagcggcg aatatcgcca atgccgatac
     9961 gccggggtat caggcgcgcg atattgattt tgccagtgag ttaaaaaaag tgatggtgcg
    10021 cggacgggaa gaaaccggcg gcgtcgcgtt gtcgttgact tcttctcgcc atattcccgc
    10081 ccaggcggtc tcttctcccg cagtggatct gctttaccgc gtacccgatc agccttcttt
    10141 ggatggtaac accgtagata tggacaggga acgtacgcag tttgcggata acagtctcaa
    10201 atatcagatg gggcttaccg ttctgggtag ccaactcaaa ggcatgatga atgtgctaca
    10261 gggaggaaac taattcgtgg cgctgttaaa catttttgat attgccggat cggcgcttgc
    10321 cgcacagtcc aagcggttga acgttgcggc cagtaacctt gcgaatgcgg atagcgtcac
    10381 cggcccggac ggacagcctt atcgcgccaa acaggtggtt tttcaggtgg acgccgcgcc
    10441 gggtcaagcc actggcgggg taaaggtcgc cagcgtgatt gaaagtcagg caccggaaaa
    10501 gctggtttat gagccaggca atccgctggc ggacgctaat ggttacgtca aaatgcccaa
    10561 cgtcgatgtg gtcggcgaaa tggtcaacac gatgtcagcc tcgcgcagct atcaggcaaa
    10621 tatcgaagtc ctgaataccg taaaaagcat gatgcttaaa acgctgacat taggccagta
    10681 aaggaggcgc gtatgtctat tgccgtaaat atgaatgacc cgaccaacac gggcgtcaaa
    10741 acgacgaccg gcagcgggtc gatgaccgga agcaacgctg ccgatctgca aagcagtttc
    10801 ctgaccttac tggtcgcgca attgaagaac caggacccga ctaacccatt acaaaataat
    10861 gagttaacga cacagttggc gcaaatcagt accgtgagcg gcattgaaaa actgaatacg
    10921 acgctggggg ctatttccgg gcaaatcgat aatagtcagt ccctacaggc gaccacgctg
    10981 attggacatg gcgttatggt gcctggcacc acaattctgg cgggtaaagg cgcggaagaa
    11041 ggggccgtga cgtccacgac gccgtttggc gtggaattgc aacagcctgc ggacaaagtg
    11101 acggcaacca ttaccgataa agatggccgg gtggtacgga cgctggagat cggtgagttg
    11161 cgagccgggg tacacacctt tacctgggat ggtaagcaaa cggacggaac aacggtaccg
    11221 aatggttctt acaacattgc gattaccgcc agcaatggcg ggacgcaact ggtggcgcag
    11281 ccgctgcaat tcgctctggt acagggcgtg acgaagggca gtaacggcaa cctgttggat
    11341 ctgggtacct acggcaccac cacactcgac gaagttcggc aaataatcta agcccttaca
    11401 cttatcagga gtcagtcatg tctttttctc aagcggttag cggcctgaac gctgcggcca
    11461 ccaaccttga tgttatcggt aataacatcg ccaactccgc cacctatggc tttaagtccg
    11521 gtacggcatc atttgccgat atgttcgccg gttccaaagt ggggttgggc gtaaaagtgg
    11581 cggggattac ccaggatttt accgacggta cgacaacgaa caccgggcgc gggctggatg
    11641 tcgcgattag ccagaacggt tttttccgcc tggtagacag caacggttcc gtgttctata
    11701 gccgcaacgg ccagttcaaa ctggacgaga accgtaacct ggtcaatatg caggggatgc
    11761 agttgaccgg ctatccggcc accggtacgc cgccgaccat tcagcagggg gcgaatcctg
    11821 cgccgatcac cattccgaac acgctgatgg cggcgaaatc gaccaccacc gcgtcaatgc
    11881 agatcaacct gaactcaacg gaccctgtac cgtctaaaac gccctttagc gtgagtgatg
    11941 cggattcgta taacaaaaaa ggcaccgtca ccgtttatga cagccagggt aatgcccatg
    12001 acatgaacgt ctattttgtg aaaaccaaag ataatgaatg ggctgtgtac acccatgaca
    12061 gcagcgatcc tgcagccact gcgccaacaa cggcgtccac tacgctgaaa ttcaatgaaa
    12121 acgggattct ggagtctggc ggtacggtga acatcaccac cggtacgatt aatggcgcga
    12181 cagcggccac cttctccctc agcttcctta actccatgca gcagaacacc ggggctaata
    12241 acatcgtcgc caccaatcaa aacggctata agcctggcga cctggtgagc taccagatta
    12301 acaatgatgg caccgtggtt ggcaactact ccaacgagca ggagcaggtg ctggggcaga
    12361 ttgtgctggc taacttcgcc aacaacgaag gtctggcatc ccagggcgat aacgtctggg
    12421 cggcgacgca ggcctccggg gtagcgctgc tggggactgc cggttccggc aacttcggta
    12481 agctgacgaa cggcgcgctg gaagcctcta acgtggattt gagtaaagag ctggtgaata
    12541 tgatcgtcgc gcagcgtaac taccagtcga atgcgcagac catcaaaacc caggaccaga
    12601 tcctcaatac gctggttaac ctgcgctaag cgcctgacgg gatagcttaa tggatcacgc
    12661 aatttatacc gccatggggg cggccagcca gacgcttaac cagcaggcgg taacggccag
    12721 caacctggct aatgcctcaa cgccgggctt tcgcgcgcag cttaacgcgc tacgcgcggt
    12781 gcccgttgat ggcctctctt tagcgacgcg cacgttggtt acggcgtcga cgccgggggc
    12841 ggatatgacc cagggtcagt tggactacac ttcccgcccg ctggatgttg cgttacagca
    12901 ggacggctgg ctggtggtgc aagcggcgga tggcgctgaa ggatataccc gtaacgggaa
    12961 tatccaggtg ggcccgaccg ggcagttaac cattcaggga catccggtta tcggcgaagg
    13021 cggcccgatt accgttccgg aagggtcgga aatcaccatt gcggcagacg gcacgatctc
    13081 cgcgctcaat cccggcgacc cgccaaacac ggtggcgccc gttgggcggc tgaagctggt
    13141 caaagcggaa ggcaatgagg tgcagcggag cgatgacggt ttattccgcc ttaccgccga
    13201 ggcacaggct gaacgcgggg cggtactggc cgccgacccg tcaattcgca ttatgtcggg
    13261 cgtgctggag ggcagtaacg tcaagccggt tgaagccatg accgacatga tcgccaacgc
    13321 acgtcgtttt gaaatgcaga tgaaggttat caccagcgta gatgagaacg aagggcgagc
    13381 taaccaactg ctgtcgatga gttaatacag gacattttat gatcagttca ttatggatcg
    13441 ccaaaaccgg tctggacgcg cagcaaacca atatggatgt gattgccaat aacctggcaa
    13501 acgtcagcac caatggtttt aagcgtcagc gcgcggtatt tgaagatctg ttgtatcaga
    13561 ccatccgcca gccgggcgcg cagtcgtccg agcagacgac gctgccttcc gggctgcaaa
    13621 tcggtaccgg cgtgcgtccg gtcgccacgg agcgcctgca cagtcagggg aacctgtcgc
    13681 agaccaacaa cagtaaagat gtggcgatta aagggcaggg ctttttccag gtcatgctgc
    13741 cggacggtac gtctgcctat acccgcgacg gctctttcca ggtggatcag aatggtcaac
    13801 tggtgacggc gggcggtttt caggtgcagc cggcaatcac cattccggcc aacgcgttaa
    13861 gcatcacgat tggccgcgac ggcgtggtca gcgttaccca gcaagggcag gccgcgccgg
    13921 ttcaggtcgg gcagcttaac ctgaccacct ttatgaacga caccggtctg gaaagcatcg
    13981 gcgagaacct ctatatcgaa acgcaatcgt ccggcgcgcc gaacgaaagc acgccggggc
    14041 tcaacggcgc ggggttgttg tatcaagggt atgtcgaaac gtcgaacgtt aacgtggcgg
    14101 aagagctggt gaacatgatt caggttcaac gcgcctatga aattaacagt aaagcagtat
    14161 cgacgaccga tcagatgctg cagaaactga cgcaactcta aggggccgcc ggtgggggat
    14221 acgccaccgg ctccctgatt ttgaagatga aggtaatgca aaaatacgcg cttcacgctt
    14281 acccagttat ggccctgatg gtcgcgacgc tgacaggatg cgcctggata cccgctaaac
    14341 cgctcgtgca gggggcgacc acggcgcagc cgatacctgg cccggtaccg gtggcgaatg
    14401 gctccatatt tcagtctgcg cagccgatta attatggcta tcagccgctt tttgaagatc
    14461 gtcgaccgcg taatatcggc gatacgctca cgattgtgtt acaggaaaac gtcagcgcca
    14521 gtaaaagctc gtcggcaaat gccagccgcg acggcaaaac cagctttggt tttgatacgg
    14581 taccgcgtta tctgcaggga ttattcggta attcccgcgc ggatatggag gcctccggcg
    14641 gcaactcttt taatggtaaa ggcggcgcga atgccagcaa tacctttagc ggcacgctga
    14701 ccgtgaccgt cgatcaggtt ctggccaatg gcaatttaca cgtcgtgggg gaaaaacaga
    14761 tcgcgattaa tcagggaacg gaattcatcc gcttctccgg cgtggtaaat ccacgcacca
    14821 tcagcggtag caactctgtt ccctcgacac aggtggcgga tgcgcggatt gaatatgtcg
    14881 ggaacggcta tattaacgaa gcgcaaaata tgggctggct gcaacgtttc ttccttaatt
    14941 tgtcgccgat gtaagcgagg tgtatgtgtt taaagctctt gcaggaatcg ttctggcact
    15001 ggttgccact ctggcgcacg ccgagcgtat ccgggatctg accagtgtcc agggagtacg
    15061 ggaaaactcg ctgatcggct acgggctggt ggtcgggctg gacggtacgg gcgaccagac
    15121 gacccagacg ccatttacca cccagacgct gaataacatg ctgtcacaac tggggattac
    15181 ggtccccacc ggcaccaata tgcagttgaa aaacgtggcg gcggtgatgg tgacggcgtc
    15241 gtatccgcct tttgcgcgac agggacaaac gatcgatgtc gtcgtttcct caatggggaa
    15301 cgctaaaagt ctgcgtggcg ggacgttatt aatgacgccg ttaaaagggg tggacagcca
    15361 ggtgtatgct ctggcgcagg gcaatattct ggtcggcggc gcgggcgctt ccgcaggcgg
    15421 cagtagcgtg caggttaacc agcttaatgg cgggcgcatc actaatggcg cgattatcga
    15481 acgcgagttg ccgactcagt tcggcgctgg caacaccatt aatctgcaat tgaacgacga
    15541 agattttacg atggcgcagc aaattaccga cgccatcaac cgcgcccgcg gttacggcag
    15601 cgccactgcg cttgatgcgc gaacggtaca ggtacgcgtg cccagcggca acagctcgca
    15661 ggtgcgtttt ctggcggaca ttcaaaatat ggaagtcaac gtgacgccgc aggatgcaaa
    15721 agtcgtgatc aactcgcgta ccggttcggt ggtcatgaat cgggaagtca cgctggatag
    15781 ctgcgctgtg gcgcagggca atttgtcagt gacagtcaat cgccaactca acgtcaacca
    15841 gccgaatacg ccatttggcg gcgggcagac cgtggtgacg ccacagactc agatagattt
    15901 gcgtcagagc ggcggatcgc tacagagcgt gcgttccagc gccaatctga acagcgtagt
    15961 gcgcgcgctg aatgcgcttg gcgcgacgcc gatggatctg atgtcgattt tgcagtccat
    16021 gcagagcgcg ggctgtctac gcgccaaact ggaaatcatc tgatgatcgg agacggtaaa
    16081 ttgctggcca gcgcggcctg ggatgcgcaa tctctgaacg aactgaaagc gaaagcgggc
    16141 caggacccgg cggcgaatat ccgtcctgtg gcccgtcagg tggaagggat gtttgtgcag
    16201 atgatgctga aaagtatgcg cgaggcttta cccaaagatg gtttattcag cagcgatcag
    16261 acgcgtctgt ataccagcat gtatgaccag cagatcgccc agcagatgac cgccggtaag
    16321 ggattggggc tggcggatat gatggttaaa cagatgacgg gcgggcagac gatgcctgca
    16381 gatgatgcgc cgcaagtacc gcttaaattc tccctggaga cggtaaacag ctatcaaaat
    16441 caggcgctga cccaactggt gcgcaaagcc ataccgaaaa cgccggacag cagcgatgcg
    16501 ccgctctccg gcgacagtaa agactttctg gcccggcttt cgctcccggc gaggctggcc
    16561 agcgaacaaa gcggggtgcc gcatcatctg attctggcgc aggcggcgct ggagtccggc
    16621 tgggggcagc ggcaaatcct gcgggagaat ggcgaaccca gctataacgt atttggcgtg
    16681 aaagcgaccg ccagttggaa agggccggtg acggaaatca ccaccactga atacgaaaat
    16741 ggcgaagcga aaaaagtgaa agcgaaattc cgcgtctata gctcgtatct ggaggcgtta
    16801 tcggattatg tcgcgctgtt aacgcgtaac ccacgctacg ctgccgtgac cactgccgcc
    16861 acggcagagc agggcgcagt ggctctgcaa aacgccggat acgccactga cccgaattac
    16921 gcgcgtaaat tggccagcat gattcagcag ttgaaagcga tgagtgaaaa ggtcagcaaa
    16981 acctacagcg cgaatctcga caatctcttt taaattgctc aagtccacgt agtcgctgcc
    17041 gataacaacg agtattgaag gattaaaagg aaccatcatg tccagcttga ttaatcacgc
    17101 catgagcgga cttaacgccg cgcaggccgc gttaaatacg gtcagtaata acatcaacaa
    17161 ttataacgtt gcgggttata cccggcagac aactattctg gcgcaggcaa acagtacgtt
    17221 aggggctggc ggctggatag gtaatggcgt ttacgtttca ggcgtacagc gcgaatatga
    17281 tgcgtttatc actaatcagc tacgcggcgc gcaaaaccag agcagcggct taaccacgcg
    17341 ctatgaacaa atgtcgaaaa tcgacaacct gctggccgat aaatccagct cactgtctgg
    17401 ctcgctgcag agttttttta ccagcctgca aacgttagtc agtaatgcgg aagatcctgc
    17461 ggcgcgtcag gcgctgattg gtaaagcgga agggctggta aaccagttca aaaccaccga
    17521 tcagtatctg cgcgatcagg ataaacaggt caatatcgcg attggctcca gcgtggcgca
    17581 aatcaacaat tacgcgaagc agatagctaa cctgaacgat caaatctccc gtatgacggg
    17641 cgtaggcgcg ggcgcatcgc cgaacgacct gctcgatcaa cgtgatcagt tggttagcga
    17701 gcttaacaag atcgttggcg tcgaggtgag tgtacaggac ggcggcacct ataacctgac
    17761 gatggccaat ggctatacgc tggtgcaggg gtcgacggcg cgtcagttgg cggcggttcc
    17821 ctccagcgcc gacccgacgc gaacgactgt cgcttatgtc gatgaggccg ccggtaacat
    17881 cgaaattccg gaaaagttgc tgaacaccgg ttcgctcggc gggctactga cgttccgttc
    17941 tcaggatctg gatcagactc gtaatacgct gggccagttg gcgttggcgt ttgccgatgc
    18001 gtttaacgcg cagcatacca aaggttatga cgccgacggc aataaaggga aagacttctt
    18061 tagcattggc tcgccggtgg tatatagcaa cagtaataat gccgataaaa cggtatcgct
    18121 aaccgctaag gtggtcgaca gcacgaaggt tcaggcgacg gattataaga ttgtttttga
    18181 cggtacagac tggcaggtta ctcgcactgc ggataacacc accttcacgg caacaaaaga
    18241 tgctgacgga aaactggaga ttgacggtct gaaagtgacg gtagggactg gcgcacagaa
    18301 aaacgacagt tttcttctca agccggtcag caatgctatc gtcgacatga acgttaaagt
    18361 gacaaatgaa gccgagattg cgatggcgtc tgagtcaaaa ctcgatcctg atgtggatac
    18421 cggcgacagc gataaccgca atggtcaggc attgctggac ttacaaaaca gcaatgtagt
    18481 gggcggcaac aaaaccttta acgatgctta cgccacgttg gtcagcgatg tgggtaacaa
    18541 aacgtcaacg ctgaaaacca gcagcaccac gcaggcgaat gtggttaaac agctttataa
    18601 acagcaacag tcggtttccg gcgttaacct cgacgaagag tacggcaatt tgcagcgtta
    18661 tcagcagtat tatctggcga atgcgcaagt attgcagacc gcgaatgcgc tgtttgatgc
    18721 gttattgaat attcgctaaa ggagaaggat gacatgcgta tcagtaccca gatgatgtac
    18781 gaacaaaata tgagcggcat cactaattct caggccgaat ggatgaagct gggcgagcag
    18841 atgtctaccg gtaagcgcgt taccaaccca tctgacgatc cgatcgccgc gtcgcaggcg
    18901 gtagtactct ttcaggcgca ggcgcagaat agccagtacg ccctggcgcg tacgtttgcc
    18961 acccaaaaag tgtcgctgga agaaagcgta ctcagtcagg tgacgacggc gattcaaacc
    19021 gcgcaggaaa aaatcgtcta tgccggaaac ggcacgttaa gcgacgatga ccgcgcgtcg
    19081 ctggcgacgg atttacaggg gatccgcgat cagctgatga acctggcaaa cagcactgac
    19141 ggcaatggtc gctatatctt tgccgggtat aaaacggaag cggcgccatt cgaccaggcg
    19201 acaggtggtt atcatggcgg cgagaaaagt gttacccagc aggtggattc cgcacgcacg
    19261 atggtaattg gccatacggg agcgcaaatt tttaatagca tcaccagcaa tgcggtgccg
    19321 gaaccggatg gctcggactc cgaaaagaat ctgtttgtca tgctcgatac ggcaattgcc
    19381 gcgctcaaga ccccggtgga aggcaatgac gtggaaaaag aaaaagccgc tgccgccatt
    19441 gataaaacca atcgcggctt aaaaaattcg cttaataacg tcctgaccgt tcgtgcggaa
    19501 ctgggaacgc aactgagcga actcagtacg ctggattcac tgggaagcga ccgtgcgctg
    19561 ggacagaagc tacagatgag caacctggta gatgtggact ggaactcggt catttcctcc
    19621 tacgtcatgc aacaggcggc attacaggcg tcctataaaa cgtttaccga catgcaggga
    19681 atgtcgcttt tccagttgaa ccggtaacgc ctctttttga aacatatcac gaaactggat
    19741 atgttttgtc tgcccgcgcc atccaccccg gcgcgggc
//
LOCUS       DAJVSD010000062        18986 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.062, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000062 DAJVSD010000000
VERSION     DAJVSD010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 18986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18986
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.062"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            347..1486
                     /locus_tag="OQP62_001821"
     CDS             347..1486
                     /locus_tag="OQP62_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HCS1721394.1"
                     /translation="MMKSKMKLMPLLASLSLISGCTVLPGSNMSTMGKDVIKQQDADF
                     DLDRMVNVYPLTPRLVEQLRPRPNVAQPNMSLDQEIASYQYRVGPGDVLNVTVWDHPE
                     LTTPAGQYRSSSDTGNWAQPDGTMFYPYIGKVSVVGKTLSEIRSDITGRLAKYIADPQ
                     VDVNIAAFRSQKAYISGQVNKSGQQAITNVPLTVLDAINAAGGLTDMADWRNVVLTHN
                     GKEQRISLQALMQNGDLSQNRLLYPGDILYVPRNDDLKVFVMGEVKKQSTLKMDFSSM
                     TLTEALGNAEGIDLTTSNASGIFVIRPLKGEGGRGGKIANIYQLDMSDATSLVMATEF
                     RLQPYDVVYVTTAPVARWNRLINQLLPTISGVRYMTDTASDIHSW"
     gene            1492..1941
                     /gene="wzb"
                     /locus_tag="OQP62_001822"
     CDS             1492..1941
                     /gene="wzb"
                     /locus_tag="OQP62_001822"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase Wzb"
                     /protein_id="HCS1721395.1"
                     /translation="MFNKILVVCVGNVCRSPTAERLLKRFHPSLTVASAGLGALVGKG
                     ADPAAASVASAHDLSLENHCARQISARLCREYDLILTMEKRHIAALCDIAPEMRSKVM
                     LFGHWDSEREIPDPYRKSRDAFEAVYTLLERSARQWAQALNAEQGKP"
     gene            1938..4097
                     /gene="wzc"
                     /locus_tag="OQP62_001823"
     CDS             1938..4097
                     /gene="wzc"
                     /locus_tag="OQP62_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase Wzc"
                     /protein_id="HCS1721396.1"
                     /translation="MTEKVKQSAAVTGSDEIDIGRLVGTVIEARWWVLGTTAIFALCA
                     VIYTFFATPIYSADALVQIEQNAGNSLVQDINSALANKPPASDAEIQLIRSRLVLGKT
                     VDDLDLDIAVTKNTFPLFGAGWERLMGRHNEMVKVTTFTRPETMSGQIFTLKVLGDKR
                     YQLVSDGGFSAQGVVGQPLNKDGVTMRVEAIDARPDTEFTVSKFSTLGMINNLQNNLT
                     VTETGKDTGVLNLTFTGEDRDQIRDILNSITRNYLQQDIAWKSEEAGKSLAFLAKQLP
                     EVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLFT
                     KAHPAYRTLLEKRKGLEDKKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQ
                     QELKITEASTVGNVRIVDPAITQPGVLKPKKALIILGSIILGLMLSIVGVLLRSLFNR
                     GIESPQALEEHGISVYASIPLSEWQKARDSVKTIKGIKRYKQSQLLAVGNPTDLAIEA
                     IRSLRTSLHFAMMQAQNNVLMLTGVSSSIGKTFVCANLAAVISQTHKRVLLIDCDMRK
                     GYTHELLGTNNVDGLSDILAGKGEIASCAKPTAIANFDLIPRGQVPPNPSELLMSERF
                     GELIAWASSRYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRF
                     DQNGIQVKGVILNSIFRRATGYQDYGYYEYEYQSDSK"
     gene            4184..5026
                     /gene="wcaA"
                     /locus_tag="OQP62_001824"
     CDS             4184..5026
                     /gene="wcaA"
                     /locus_tag="OQP62_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaA"
                     /protein_id="HCS1721397.1"
                     /translation="MTTDNPLISIYMPTWNRQQLAIRAIKSVLRQDYRHWEMIIVDDC
                     SSSYQQLQQFVEELNDPRVRYTHNAMNTGACAVRNQAIMQAQGHYITGIDDDDEWTPN
                     RLSVFLAHKHQLTTHAFLYANDYVCEGEVYSQPASLPLYPKSPYSRRLFYKRNIIGNQ
                     VFTWAWRFKACLFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSS
                     PKKFSGYFHFYRKHKDKFDRASKKYQLFTLYQIRNKRMTWRTLLTLLSVRNSKRLAAG
                     LRGR"
     gene            5029..5517
                     /gene="wcaB"
                     /locus_tag="OQP62_001825"
     CDS             5029..5517
                     /gene="wcaB"
                     /locus_tag="OQP62_001825"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis acetyltransferase
                     WcaB"
                     /protein_id="HCS1721398.1"
                     /translation="MLEDLRANSWSLRPCCMVLAYRIAHFCSVWRKKNVLNNLWAAPV
                     LVLYRVITECLFGYEIQAAATIGRRFTIHHGYAVVINKHVVAGDDFTIRHGVTIGNRG
                     ADSLACPVIGHGVELGANVILLGDITIGNHVTIGAGSVVLDSIPDHALVVGEKARVKV
                     ST"
     gene            5514..6731
                     /gene="wcaC"
                     /locus_tag="OQP62_001826"
     CDS             5514..6731
                     /gene="wcaC"
                     /locus_tag="OQP62_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaC"
                     /protein_id="HCS1721399.1"
                     /translation="MNILQFNVRLAEGGAAGVALDLHLRALQKGLTSHFVYGYGKGGK
                     KSVSHHRYPQVIKQTPRGTAIANIALFRFLNRDLFGNLDNLYRTVIQTSGPLVLHFHV
                     LHSYWLNLADIVTFCEKVKAQKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKSGCQKCP
                     TLSNYPPVRVDRAHQLIDGKRQRFRDMLRLGCQFISPSQHVAEAFNSVYGAGLCRVIN
                     NGIDLATEAILAQLSPVPLNPGKPRIAIVAHDLRYDGKTDQRLVHDMMALGEKIELHT
                     FGKFSPFTGQNVVNHGFETDKRKLMSALNEMDALVFSSRVDNYPLILCEALSIGVPVI
                     ATHSEAAQEVLAKSGGQTFAATDVLRLAQRRKPEIAQAVFGATLDAFRMRSRVAYSGQ
                     QMLEEYVSFYQNL"
     gene            6706..7919
                     /gene="wcaD"
                     /locus_tag="OQP62_001827"
                     /pseudo
     CDS             6706..7919
                     /gene="wcaD"
                     /locus_tag="OQP62_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461057.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative colanic acid polymerase WcaD"
     gene            7932..8678
                     /gene="wcaE"
                     /locus_tag="OQP62_001828"
     CDS             7932..8678
                     /gene="wcaE"
                     /locus_tag="OQP62_001828"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaE"
                     /protein_id="HCS1721400.1"
                     /translation="MFLSVVTVAFRNYEGVVKTWRSLRNLARDPGLSFEWIVVDGGSE
                     DGTREFLQKRHGEFNLRFISEKDRGIYDAMNKGIALAQGRYTLFLNSGDAFHDDAALF
                     VRQLARQKGEAMYIGDALLDFGGGHKIRRKAKPGYYIYHSLPASHQAIFFPTAALKKY
                     PYDLQYHVSSDYALAARLYKAGYPFRRINGLVSEFSMGGVSTSNNLELCQDAKNVQRK
                     ILRVPGFWAQLSYLLRLKTTGKTKARYNKV"
     gene            8694..9248
                     /gene="wcaF"
                     /locus_tag="OQP62_001829"
     CDS             8694..9248
                     /gene="wcaF"
                     /locus_tag="OQP62_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis acetyltransferase
                     WcaF"
                     /protein_id="HCS1721401.1"
                     /translation="MQDLSGFTVPKGFRGANALKVQLWWAVQATLFAGSPQILYRWRA
                     FLLRLFGAKIGKNVVIRPSVKITYPWKLTVGDYAWIGDDAVLYTLGEINIGAHAVISQ
                     KGYLCTGSHDYTSAHFDINAAPIVIGEKCWLATDVFVAPGVTIGHGTVVGARSSVFKS
                     LPANAICRGNPAVVTRQRVQKVTP"
     gene            9272..10393
                     /gene="gmd"
                     /locus_tag="OQP62_001830"
     CDS             9272..10393
                     /gene="gmd"
                     /locus_tag="OQP62_001830"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HCS1721402.1"
                     /translation="MSKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERV
                     DHIYQDPHSCNPKFHLHYGDLTDASNLTRILQEVQPDEVYNLGAMSHVAVSFESPEYT
                     ADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVA
                     KLYAYWITVNYRESYGIYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL
                     GNMDSLRDWGHAKDYVRMQWMMLQQEQPEDFVIATGVQYSVRQFVELAAAQLGIKLRF
                     EGEGINEKGIVVSVTGHDAPGVKPRDVIVAVDPCYFRPAEVETLLGDPSKAHEKLGWK
                     PEITLSEMVSEMVANDLEAAKKHSLLKSHGYEVAIALES"
     gene            10396..11361
                     /locus_tag="OQP62_001831"
     CDS             10396..11361
                     /locus_tag="OQP62_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HCS1721403.1"
                     /translation="MNKQRIFVAGHRGMVGSAIVRQLAQRGDVELVLRTRDELDLLDG
                     RAVQAFFAGAGIDQVYLAAAKVGGIVANNTYPADFIYENMMIESNIIHAAHLHNVNKL
                     LFLGSSCIYPKLARQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRS
                     VMPTNLYGPHDNFHPDNSHVIPALLRRFHEAAQSHAPEVVVWGSGTPMREFLHVDDMA
                     AASIHVMELAREVWQENTAPMLSHINVGTGVDCTIRELAQTIAKVVGYQGRVVFDAAK
                     PDGTPRKLLDVTRLHQLGWYHEISLEAGLAGTYQWFLENQQRFRG"
     gene            11364..11837
                     /locus_tag="OQP62_001832"
     CDS             11364..11837
                     /locus_tag="OQP62_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461052.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose mannosyl hydrolase"
                     /protein_id="HCS1721404.1"
                     /translation="MFLRQEDFAAVVRTTPLISLDFIVENGQGEILLGQRLNRPAQGY
                     WFVPGGRVCKDETLEAAFARLTQAELGVRLPLAAGTFYGVWQHFYDDNFSSEDFSTHY
                     IVLGFRLRVAESDLRLPDAQHGSYRWLTPEQLLAGDNVHENSRAYFSPDAPAVGL"
     gene            11834..13057
                     /gene="wcaI"
                     /locus_tag="OQP62_001833"
     CDS             11834..13057
                     /gene="wcaI"
                     /locus_tag="OQP62_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis fucosyltransferase
                     WcaI"
                     /protein_id="HCS1721405.1"
                     /translation="MKILVYGINYSPELTGIGKYTGEMVAWMAREGHEVRVITAPPYY
                     PQWKVGERYSAWRYRREEGEATVWRCPLYVPKQPSTLKRLLHLGSFALSSFFPLMAQR
                     RWKPDRIIGVVPTLFCTPGMRLLATLSGARTVLHIQDYEVDAMLGLGMAGKGKRGSVA
                     RLATAFERSALRNVDNVSTISRSMMNKAREKGVAAEKILFFPNWSEVARFQDVNDADV
                     TALRQQLGLPEGKKIVLYSGNIGEKQGLEKVIDAAERLRDRPLIFAIVGQGGGKARLE
                     NMARERGLLNIKFLPLQPYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGN
                     AVITAEPHTELGQLCARYPGIAVCVEPESTDALVDGISQALAMPKNNTTAREYAERTL
                     NKENVLRQFIADIRG"
     gene            13054..14496
                     /gene="cpsB"
                     /locus_tag="OQP62_001834"
     CDS             13054..14496
                     /gene="cpsB"
                     /locus_tag="OQP62_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461050.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate guanyltransferase"
                     /protein_id="HCS1721406.1"
                     /translation="MIMRQTKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQ
                     TTICRLNGVECESPVVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAAL
                     AATRQHTDCDPLMLVLAADHAIANEEAFRDAVRGAMPYADAGKLVTFGIVPDLPETGY
                     GYIRRGDVVPGATDAVAFEVAQFVEKPGLETAQAYVASGDYYWNSGMFLFRAGRYLEE
                     LKKFRPDILAACEQAMRGVDPDLDFIRVDEEAFLACPEESIDYAVMERTADAVVMPMD
                     AGWSDVGSWSSLWEISAHTPEGNVHHGDVISHKTENSYVYAESGLVTTVGVKDLVVVQ
                     TKDAVLIADRHAVQDVKKVVEKIKADGRHEHHMHREVYRPWGKYDSIDAGERYQVKRI
                     TVKPGEGLSVQMHHHRAEHWVVVAGTARVTINGEVKLLGENESIYIPLGATHCLENPG
                     KIPLDLIEVRSGSYLEEDDVVRFEDRYGRV"
     gene            14607..15977
                     /gene="cpsG"
                     /locus_tag="OQP62_001835"
                     /gene_synonym="manB"
     CDS             14607..15977
                     /gene="cpsG"
                     /locus_tag="OQP62_001835"
                     /gene_synonym="manB"
                     /EC_number="5.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis phosphomannomutase
                     CpsG"
                     /protein_id="HCS1721407.1"
                     /translation="MTKLTCFKAYDIRGRLGEELNEDIAWRIGRAYGEYLKPKTIVLG
                     GDVRLTSEVLKMALAKGLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPM
                     DYNGMKLVREGARPISGDTGLRDVQRLAEAGDFPPVNDATRGSYRQISMRDAYIDHLL
                     GYISVNNLTPLKLVFNAGNGAAGPVIDAIEARLKALGAPVEFIKIHNTPDGTFPKGIP
                     NPLLPECRDDTRKAVIEHGADMGIAFDGDFDRCFLFDEKGKFIEGYYIVGLLAEAFLE
                     KHPGAKIIHDPRLTWNTEAVVTAAGGTPMMSKTGHAFIKERMRTEDAIYGGEMSAHHY
                     FRDFAYCDSGMIPWLLVAELVCLKGQSLGELVRDRMAAFPASGEINSRLAEPAAAIAR
                     VEAHFAEEAQAVDRTDGLSMSFADWRFNLRSSNTEPVVRLNVESRGDIPLMEARTRTL
                     LALLNQ"
     gene            16031..17425
                     /gene="wcaJ"
                     /locus_tag="OQP62_001836"
     CDS             16031..17425
                     /gene="wcaJ"
                     /locus_tag="OQP62_001836"
                     /EC_number="2.7.8.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-phosphate glucose
                     phosphotransferase"
                     /protein_id="HCS1721408.1"
                     /translation="MTNLKKRERAKTNASLISMVQRFSDITIMFGGLWFICEVSGLPF
                     LYMHLLVALITLVVFQMLGGMTDFYRSWRGVKMSTELTLLLQNWTLSLIFSAGLVAFN
                     DDFDNRLATWLAWYALSSLGLVLCRSFIRFGAGWLRNRGYNTRRGAVAGDLPAGQALL
                     DSFRNEPWLGFEVVGVYHDPKPGGVSADWAGNFEQLIDDAKASRIHNVYIAMSMSDGA
                     MVKKLVRELADTTCSVILIPDVFTFNILHSRVEEMSGVPVVPLYDTPLSGINRLLKRA
                     EDIVLASLILLLISPVLCCIAPAVKLSSPGPVIFRQTRYGMDGKPSKVWRFRSMKVME
                     NDKVVTQATQNDPRVTRVGNFLRRTSLDELPQFINVLTGGMSIVGPRPHAVAHNEQYR
                     QLIEGYMLRHKMKPGITGWAQINGWRGETDTLEKMEKRVEFDLEYIREWSIWFDIKIV
                     FLTIFKGFVNKAAY"
     gene            17527..>18986
                     /gene="wzxC"
                     /locus_tag="OQP62_001837"
     CDS             17527..>18986
                     /gene="wzxC"
                     /locus_tag="OQP62_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid undecaprenyl disphosphate flippase
                     WzxC"
                     /protein_id="HCS1721409.1"
                     /translation="MSLRQKTISGVKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLL
                     TVSLVIIALADTISDFGIANSIIQRKTIGHLELTTLYWLNVGLGIVVFAVVFWLSDAI
                     AHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTV
                     ISAHYWPLALTAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLASVSTNLRFGAWLTA
                     DSIVNYINTNLSTLVLARILGASVAGGYNLAYNVAVVPPAKLNPIITRVLFPAFAKIQ
                     DDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKWNSIIPILKLLCVVG
                     LLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQI
                     INTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTFITSYGAGKLVDGYLPLSGVFA
                     LQVVVGILSFILMIIFSRNALVMEIKNQLVGSEKMK"
BASE COUNT         4292 a         4806 c         5526 g         4362 t
ORIGIN      
        1 gattaagata gcgcgcttaa atatcctgtc acgacatcga gaaaactatt aatacgtaac
       61 ctttatttcg ctgaagattt ttatctgaac gaggatgaaa ttggagggga atgcgaaaat
      121 ttagaataat cagtgtattg gtagctaaga agctaggggc ggtagcgtgc ctgaaagcct
      181 gaatataaga ctttattatt ctgtcaatag cctgcggatg aattgatttt tttcagaatg
      241 atgccagtta attttctctg ccattaactg caaggtaaat gtgcacggac gaagccgcta
      301 tttaaattgc acaggataat gactctgcca aagtgataaa taatcaatga tgaaatccaa
      361 aatgaaattg atgccattat tggcgtcgct cagcttgata agtggttgca cagtactccc
      421 gggcagcaat atgtctacga tggggaaaga tgtgatcaaa cagcaagacg ctgactttga
      481 tctcgaccgg atggtcaatg tgtatccgct gacgccacgg ctggttgagc aattacgccc
      541 gcggcccaat gtcgcgcaac cgaatatgtc gctggaccag gagatcgcca gctatcagta
      601 tcgcgtcggg cctggcgatg tgctgaatgt caccgtctgg gatcacccgg aattgaccac
      661 gccagcaggc cagtaccgta gctcaagcga taccggcaac tgggctcagc cggacggcac
      721 catgttttat ccctatattg gcaaggttag cgtcgtcggt aaaactttgt cagagattcg
      781 cagcgatatt accgggcgtt tagcgaagta catcgcagac ccgcaggtgg atgtcaatat
      841 cgccgctttc cgctcgcaaa aagcgtatat ctccggccag gtgaataaat ccggtcagca
      901 ggccattact aacgtcccgc taaccgtcct ggatgcgatt aacgctgcgg gcggcctgac
      961 cgatatggcg gactggcgca acgtcgtgtt gacgcacaac ggcaaagaac agcgcatttc
     1021 gctacaggcg ctgatgcaaa atggcgatct tagtcagaac cgcttgctct accctggcga
     1081 cattctgtat gtgccgcgca atgacgatct gaaagtcttt gtcatgggcg aagtgaaaaa
     1141 acagagcacc ctcaaaatgg atttcagcag catgacgctc accgaagcat taggcaatgc
     1201 ggaaggcatc gatctgacca cctccaacgc cagcggcatt tttgtgattc gtccgttgaa
     1261 aggcgagggg ggacgcggcg gcaagatcgc caatatctac cagcttgata tgtctgacgc
     1321 cacgtcattg gtgatggcga cggaattccg acttcagcct tacgatgtgg tgtacgtcac
     1381 gaccgcgccg gttgctcgct ggaaccgtct gatcaatcag ttgctgccga ccattagcgg
     1441 tgtccgttat atgacggata cggccagcga cattcattcc tggtaatcgt tatgtttaac
     1501 aaaatcttag tggtctgtgt ggggaatgtt tgccgttccc cgacggcgga acgtttgcta
     1561 aagcgctttc atccttcgct gacggttgcg tctgccggat taggcgcgct ggtcggcaaa
     1621 ggagccgatc ctgcggcggc gagcgtggcg agcgcccacg atctgtcttt ggaaaatcac
     1681 tgcgcaaggc aaatttccgc gcgcctgtgc cgggaatatg acctgattct gacgatggag
     1741 aaacgccaca tcgccgccct gtgcgacatt gcgccggaaa tgcgcagcaa ggtaatgctg
     1801 tttggtcact gggacagcga gcgtgaaata ccagacccgt atcgcaaaag ccgcgatgcg
     1861 tttgaggcgg tgtacacatt actggaaagg tctgcccgcc agtgggcgca ggcactgaat
     1921 gcagagcagg gaaaaccatg acagaaaaag taaaacaatc tgcggcggtt acgggtagcg
     1981 atgaaatcga tatcgggcgt ctggtcggaa cggtgattga agcgcgttgg tgggtgttgg
     2041 ggacgacggc catatttgcg ctgtgcgcgg taatttatac gttcttcgcc acgcccatct
     2101 atagcgccga tgcgctggtg cagattgaac aaaacgccgg taattcgctg gtacaggata
     2161 tcaacagcgc attagcgaat aagccgccgg cttccgatgc ggaaattcag ctcattcgat
     2221 cgcgcctggt gctggggaag accgttgacg atctggatct ggatattgcc gtcaccaaaa
     2281 acacctttcc gctgttcggc gccgggtggg agcggctgat gggacgtcac aatgaaatgg
     2341 tgaaagtcac gacattcacc cgaccagaga cgatgagcgg acagatcttc accctcaaag
     2401 tgctgggcga caaacgttat cagttggtca gcgacggcgg atttagcgcg cagggcgttg
     2461 tgggccagcc actcaataaa gacggcgtga cgatgcgggt agaggcgatt gacgcccgtc
     2521 ctgatacgga atttacggtg agtaaattct caacgcttgg catgattaat aacctgcaaa
     2581 ataacctcac cgtaacggaa accggcaaag ataccggcgt tctgaacctg acgttcacgg
     2641 gagaggatcg cgaccagatc cgcgacattc tcaacagtat tacccgtaac tatctgcaac
     2701 aggatattgc gtggaaatct gaagaggcgg ggaagagcct ggcgtttctg gcaaaacaac
     2761 tgccggaagt ccgcagccgt ctggatgtgg cggaaaacaa gctaaacgct ttccgccagg
     2821 ataaagactc ggtggattta ccgctggagg cgaaggcggt gctcgattcg atggttaata
     2881 tcgacgccca gttgaatgag ttgacgttta aagaagcgga aatttccaag ctctttacca
     2941 aagcgcatcc ggcttaccgc accctgctgg aaaaacgtaa agggctggaa gataaaaaag
     3001 ccaaactgaa cgggcgggtg acggcgatgc cgaaaaccca gcaggagatt gtgcgtttga
     3061 cccgcgatgt ggagtccggc cagcaggttt atatgcaact gcttaataaa cagcaggagc
     3121 tgaaaatcac cgaagccagc accgttggca acgtgcgcat cgttgacccg gcgattaccc
     3181 agccgggcgt gctaaagccg aaaaaggcgt tgattattct cggcagcatt attctgggat
     3241 taatgttatc gattgtcggc gtgctgctgc gctcgctgtt taatcgcggt atcgaaagcc
     3301 cgcaggcgct ggaggagcac gggatcagcg tctatgccag tattccgctg tcggaatggc
     3361 aaaaagcgcg cgatagcgtc aaaaccatta aagggattaa gcgttacaag cagagccaac
     3421 tgctggcggt gggcaatccg accgatctgg cgattgaggc gattcgcagc ctgcgcacca
     3481 gcctccattt cgccatgatg caggcgcaaa ataatgtact catgctcaca ggcgtcagct
     3541 cctctatcgg taaaaccttt gtttgcgcca acctggcggc cgtcatcagc cagacgcata
     3601 aacgggtatt actgatcgac tgcgatatgc gcaagggcta cacccatgaa ctgctcggca
     3661 ccaataacgt ggacggctta tctgacattc tggcgggcaa aggcgagata gcctcctgcg
     3721 cgaaacccac ggcgatcgct aattttgatc ttattccgcg cggtcaggta ccgcctaatc
     3781 catcggaatt gctgatgagc gagcgcttcg gcgagctgat cgcctgggca agcagccgct
     3841 acgacctggt attaatcgac acgccgccga ttctggccgt gacggacgcc gcgattgtgg
     3901 gtcgtcacgt cgggacgacg ctgatggtgg cgcgttatgc cgtcaacacc ttgaaagaag
     3961 tggaaaccag tctgagccgt tttgaccaga atggcattca ggtcaaaggc gtcattctca
     4021 actccatttt ccgccgggcg acgggctacc aggattatgg ctattacgag tatgaatacc
     4081 agtcagattc caaataaaaa ataaggcgtg ccggatggcg cggcctgtga ctgtaggccg
     4141 gacaagcgta gcgccatgcg gcaaaactat ctggggaata agcatgacaa cagacaatcc
     4201 gctgatctca atttatatgc caacctggaa caggcagcag ttggctatcc gggcgattaa
     4261 atcagtacta cgtcaggact accgtcactg ggagatgatc atcgtggatg attgctcctc
     4321 gtcttatcag cagctacaac aatttgttga ggagctgaac gacccgcgcg ttcgttatac
     4381 tcataacgcc atgaataccg gcgcctgcgc ggttcgcaac caggccatta tgcaggcgca
     4441 aggacactac attaccggga ttgatgatga cgatgaatgg acgcccaacc gtctgagcgt
     4501 gtttctggcc cataaacacc agttgactac gcatgccttt ttgtatgcca acgactatgt
     4561 gtgcgagggc gaggtctact ctcagcctgc cagcctgccg ctgtatccga aatcccctta
     4621 ttcgcgccgc ttgttctaca agcgcaatat tattggcaat caggttttta cctgggcctg
     4681 gcgttttaaa gcgtgtttgt tcgataccga actcaaggcg gcgcaggatt acgacatttt
     4741 tctgcgcatg gtggtggagt atggcgaacc gtggaaagtt gaagaggcga cgcaaatttt
     4801 acatatcaac cacggcgaga tgcagattac ctcttcgccg aaaaagttct ccggctattt
     4861 ccatttttat cgtaagcaca aagataaatt cgatcgcgcc agcaaaaaat accagctttt
     4921 tacgctgtac caaattcgca ataagcgaat gacctggcgc acgttgctga cgttgctctc
     4981 cgtgcgtaat agcaaacgcc tggcggccgg gctgcggggg cgataacgat gctggaagac
     5041 ttacgcgcga atagctggag cttacgcccc tgttgcatgg tgctggccta ccgtatcgct
     5101 catttttgtt ccgtctggcg caaaaagaat gtgctgaata atctgtgggc cgcgccggtg
     5161 ctggtgctgt atcgcgtgat cacggaatgc ctgttcgggt atgaaatcca ggccgccgcg
     5221 accattggtc ggcggttcac tatccatcat ggttacgcgg tagtgatcaa caaacatgtc
     5281 gtcgccggcg acgattttac cattcgccac ggcgtcacca ttggcaatcg cggcgcggac
     5341 agcctggctt gtccggtgat tggtcacggc gttgagctgg gggcgaacgt catcctgctt
     5401 ggcgatatta ctatcggtaa tcacgtcacg attggcgcgg gtagcgtggt gcttgacagt
     5461 attccggatc atgcgctggt ggtgggagaa aaagcacggg tgaaggtcag cacatgaata
     5521 ttctgcaatt taatgtacgg ctggcggaag gcggtgcggc gggagtggcg ttagatcttc
     5581 atctgcgggc gctgcaaaaa gggctgacgt cgcattttgt ttatggttat ggcaaaggcg
     5641 gaaaaaaaag cgtcagtcac caccgttatc cgcaggtgat aaaacagacg ccgcgcggca
     5701 cggcaatcgc caatatcgcg ctatttcgtt tcctgaatcg cgatctgttt ggcaatctcg
     5761 acaatcttta ccgcacggtt atccagacat ccggcccgct ggtgctgcat tttcatgttc
     5821 tccacagtta ctggctaaac ctggcggata tcgtgacgtt ttgcgaaaaa gtcaaagcac
     5881 aaaaaccgga cgtcacgctg gtctggacgc tgcacgatca ctggagcgtt accgggcgtt
     5941 gcgccttcac cgacggttgc gagggctgga aaagcggctg ccaaaaatgt ccgaccctaa
     6001 gcaattatcc gccagtcagg gtggatcggg cgcaccagct tattgacggc aaacgtcagc
     6061 gctttcgtga catgctgcgg ctgggctgcc agtttatttc gccgagccag catgtggccg
     6121 aggcctttaa cagcgtttat ggcgcgggac tctgccgggt gattaacaac ggtatcgatc
     6181 tggcgaccga ggcgattctc gcgcaactat cacctgtgcc gctgaatccg ggcaaaccgc
     6241 ggatcgccat tgtggcgcat gacttgcgtt acgacggcaa aactgaccag cgtctggtac
     6301 acgacatgat ggcgctgggc gaaaaaattg aactgcatac cttcggtaaa ttttcgcctt
     6361 ttaccggcca aaacgtcgtt aatcacggtt ttgaaaccga taagcgcaaa ttaatgagcg
     6421 cgctcaatga gatggacgcg ctggtcttta gctcgcgggt cgataactat ccgctgatct
     6481 tgtgtgaagc gctctcgatc ggcgtaccgg taatcgccac ccacagcgag gcggcgcagg
     6541 aggtgctggc gaaatccggc ggccagactt ttgccgctac agatgtactg cgcctggcgc
     6601 agcggcgtaa gccagagatt gctcaggcgg tattcggcgc aacgctggac gcctttcgta
     6661 tgcgtagccg cgtcgcgtac agcggtcaac agatgctgga ggagtatgtc tcgttctatc
     6721 agaatctgta gctatctgct gctgccgctg atctacctac tggtcaatgt caagattgcc
     6781 caactggggg aaagctttcc cattaccatc gtcacttttt taccgctgtt gctgctgtta
     6841 tttgtggaac gcattagcgt aaaaaaattg atgatcgcct taggcatcgg cgcggggctt
     6901 acggcattta acttcctgtt cggccagtcg ctgaatgccg gtaaatatgt cacgtccacg
     6961 atgctgtttg tctatattgt ggtcattatc gggatggtct ggagtatccg attcaaaacc
     7021 atttccgcgc ataaccaccg aaagattttg cgttttttta tctggtggtg ggtatagtgg
     7081 tcgcgctcgc cgcggttgag atggcgcaaa ttatccttac cggcggcagc agtatcatgg
     7141 aaggaatttc gaaatatctc atttacagta atagctacgt actgaacttc ataaaatttg
     7201 gcggtaagcg taccactgcg ctttattttg aaccggcatt tttcgctttg gcactaatct
     7261 caatttggct gagcatcaaa cagtttggta tcaaaatacc gaaaagcgat gctatgattc
     7321 tggcagggat aatattatca ggatcatttt caggggtaat gacctttatc ctgttttacc
     7381 ttctggagtg ggcgttccaa tatttgaata aggatgcgat aaagaaaaaa cttccactgg
     7441 cgctggtatc attaaccctg tttttggttg gggtaattat tgcatttcct tatatcgcga
     7501 cacgacttgg cgatttaggg acggaaggat tatcttctta ttatcgtatt gtgggcccgt
     7561 tagtcatggt cggatattcc ttgacccata ttgatggtgt agtcagattt ggctcacttt
     7621 atgaatatgt cgcatcattc ggaatcttta acggtgcgga tgtcgggaaa accatagaca
     7681 atggattgta tctgctgatt atttattttt cctggttcgc agtgctaatg acgctgtggt
     7741 atatggggaa agttttaaaa atggcgctaa atgcgtttgg cgataatcgc aattttcggg
     7801 tgcagctcta tctttttacg ccggtgtcgc tgttttttac cggttcaata tttagcccgg
     7861 aatatgcttt tttaatcgtc tgtccgttca ttttgcgcaa ggcgttaaaa atttcataac
     7921 ggggtggttg catgttttta agcgtcgtta ccgtcgcctt tcgcaattac gaaggggtgg
     7981 taaaaacctg gcgctcgctg cgcaatctgg cgcgcgatcc gggcctgtca tttgaatgga
     8041 tcgtagtgga tggcggttcg gaggacggca cgcgcgaatt tctgcaaaaa cgtcacggtg
     8101 agtttaacct gcgttttatc agtgaaaagg atcgcggtat ttatgatgcc atgaacaaag
     8161 gcattgcctt ggcgcagggg cgctataccc tgtttcttaa ttccggtgat gcgttccatg
     8221 atgatgccgc gctgtttgtc cgccaactgg cgcggcaaaa gggcgaggcg atgtatattg
     8281 gcgacgcgct gctggatttc ggcggcgggc ataaaatacg ccggaaagct aaacccgggt
     8341 attatatcta ccatagtttg ccagccagcc atcaggcgat atttttcccg acggcagcgt
     8401 taaaaaagta tccttatgat ctgcaatatc atgtctcttc agattatgcg ctggcggccc
     8461 gtctctataa agcaggctat ccttttcggc gaattaacgg actggtatct gaattttcga
     8521 tgggcggcgt gtcaacctcg aataatctgg aattatgtca ggatgcaaaa aacgtacagc
     8581 gaaaaatatt acgtgttcca gggttttggg cgcaattatc ctatttgtta cgtctgaaaa
     8641 cgacgggtaa aacaaaagcg cggtataaca aagtctaatc accgggagtt attatgcagg
     8701 atcttagcgg ctttacggtg ccgaaagggt tccgcggcgc taatgcgcta aaagtacaat
     8761 tatggtgggc ggtacaggcg acattattcg ccggatcgcc gcaaatattg tatcgctggc
     8821 gagccttttt gctgcgtctg tttggcgcca aaattggaaa aaatgtggtt attcgaccgt
     8881 cagtaaaaat tacctatccg tggaaattaa ccgtcggcga ttatgcctgg ataggcgacg
     8941 acgctgtgtt atatacgttg ggtgaaatta atattggcgc acatgcggtt atttcacaaa
     9001 aaggttattt atgtaccggt agccatgatt ataccagcgc ccatttcgat attaacgccg
     9061 cgccgattgt tattggcgaa aaatgttggc tggcgaccga tgtttttgtc gcgcccggcg
     9121 tgacgatagg tcatggcacc gtcgtcggcg cgcgtagcag cgtatttaaa tcattaccgg
     9181 caaatgcgat ttgtcggggc aatcccgcag tggtaacgcg ccagcgcgtt cagaaagtta
     9241 ctccctaacg ggactatttg aggaaatgaa aatgtcaaaa gtcgctctca ttactggcgt
     9301 aaccggacag gatgggtctt acctggcaga atttctgctg gaaaaagggt atgaggtgca
     9361 tggtatcaag cgtcgcgcgt catcgtttaa taccgagcgc gtggaccata tttatcagga
     9421 cccgcacagc tgcaacccga aatttcatct gcattatggc gacctgaccg acgcctcaaa
     9481 cctgacccgc attttacaag aagtgcagcc ggatgaggtc tacaacctgg gcgcgatgag
     9541 ccacgtggcg gtgtcgtttg agtcgccgga atataccgcc gatgtggatg cgatgggcac
     9601 tctgcgcctg ctggaggcga tccgcttcct cggtcttgaa aagaaaacgc gtttctacca
     9661 ggcctccacc tctgaactgt acgggctggt gcaggaaatc ccgcagaaag agaccacgcc
     9721 gttctacccg cgttctccct atgcggtggc gaaactgtac gcctactgga tcaccgtcaa
     9781 ctaccgtgaa tcctacggta tttacgcctg taacggcatt ctgtttaacc acgagtctcc
     9841 gcgtcgtggc gaaaccttcg tcacccgtaa gatcacccgc gccatcgcca atatcgccca
     9901 gggactggag tcctgcctgt atctcggcaa catggactcg ctgcgcgact ggggccatgc
     9961 gaaagattac gtacggatgc agtggatgat gttacagcag gagcagccgg aagatttcgt
    10021 gattgccacc ggcgtgcagt attccgtacg ccagtttgtg gagctggcgg cggcgcaact
    10081 ggggataaaa ctgcgctttg aaggcgaagg cattaatgag aaagggatcg tggtatccgt
    10141 taccggacac gatgcgccgg gcgtgaaacc gagggatgtg attgtggccg ttgatccgtg
    10201 ttatttccgt ccggcggaag tggaaaccct gctgggcgat ccgtccaaag cgcatgagaa
    10261 actgggctgg aaaccggaaa ttaccctgtc ggagatggtc tccgagatgg tggcgaacga
    10321 tctggaggcc gcgaaaaaac actcactgct gaaatctcac ggttacgagg tggccatcgc
    10381 gctggagtcc tgagaatgaa taagcaacga atttttgtgg cgggccatcg cgggatggtg
    10441 ggctccgcca ttgtacggca gcttgcgcag cgcggcgacg tggaactggt gctgcgcacc
    10501 cgcgatgagc tggatctgct cgacgggcgc gcggtacagg cgttctttgc cggagcgggt
    10561 atcgaccagg tttatctggc ggcggcgaaa gtgggcggca ttgttgccaa caacacgtat
    10621 ccggcggatt ttatttatga aaacatgatg atagagagca acattattca cgccgcgcac
    10681 ctgcacaacg tgaacaaact gctgtttctc ggttcgtcct gtatctatcc gaaactggca
    10741 aggcagccga tggcggaaag cgagctgctg caggggacgc tggagccgac caacgagccg
    10801 tatgccatcg ccaagatcgc cgggattaaa ctgtgcgagt cctacaaccg gcagtacggt
    10861 cgcgactacc gttcggtgat gccaaccaac ctgtacggcc cgcatgataa tttccacccg
    10921 gacaattcac atgtgatccc ggcgctgctg cgtcgctttc atgaggctgc gcagagccac
    10981 gcgccggagg tggtggtgtg gggcagcggc acgccgatgc gcgaatttct gcacgttgac
    11041 gatatggcgg cggccagcat tcacgtgatg gagctggcgc gcgaagtgtg gcaggagaac
    11101 accgccccga tgctgtcgca cattaacgtc ggcactggcg tggactgcac cattcgcgag
    11161 ctggcgcaga ccatcgcaaa ggtggtgggt taccagggcc gggtggtgtt cgacgccgcg
    11221 aagccggacg gcacgccgcg taaattgctc gacgtcacgc gcctgcatca gcttggctgg
    11281 tatcacgaaa tttcactgga ggcagggctt gccggtactt accagtggtt ccttgagaat
    11341 cagcaacggt tccgggggtg acaatgtttt tacgtcagga agatttcgcc gccgtggtgc
    11401 ggaccacgcc cctcatctcc ctcgatttca tcgtggaaaa cggccagggg gaaattttgc
    11461 tgggccagcg cctcaaccgt ccggcgcagg gctactggtt tgtgccgggg gggcgggtgt
    11521 gcaaagacga aacgctggag gccgcttttg cacgcctgac gcaggcggaa ctgggcgtgc
    11581 gtctgccgct ggcggcaggg acgttttatg gcgtctggca gcacttctat gacgacaact
    11641 tttccagtga ggatttttca actcactaca tcgtgctcgg ctttcgtctg cgcgtggcgg
    11701 agagcgattt acgcctgcct gatgcccagc atggcagtta ccgctggctg acgccggaac
    11761 agcttctggc aggcgacaat gttcatgaga acagtcgggc ctacttctct cctgacgcgc
    11821 cggcggtggg cctatgaaga tcctggtcta tggcattaac tattcaccgg aactgaccgg
    11881 tatcggcaaa tataccggcg aaatggtggc gtggatggcg cgggaaggcc atgaggtgcg
    11941 ggttattact gcgccgccgt actacccgca gtggaaggtc ggtgagcgct attccgcctg
    12001 gcgctatcgc cgggaagagg gcgaggctac cgtctggcgc tgcccgctgt atgtgccgaa
    12061 acagccctcc accctaaaac gactgcttca tctggggagc tttgcattga gcagtttttt
    12121 cccactgatg gcgcagcgtc gctggaagcc ggatcggatt atcggcgttg taccgacgct
    12181 cttttgtacg ccgggaatgc gtctgctggc gacactctcc ggcgcgcgta ccgtactgca
    12241 tattcaggat tacgaagtgg acgccatgct cggcttagga atggcgggaa aaggcaagcg
    12301 cggcagcgta gcgcggttag cgacggcctt tgaacgcagc gcgctgcgta acgttgataa
    12361 tgtttcgacc atctctcgct ccatgatgaa taaagcgcgg gaaaagggcg tcgcggcgga
    12421 aaaaatcctc ttttttccaa actggtcgga agtggcgcgc tttcaggacg ttaatgacgc
    12481 tgacgtgacg gctttgcgtc agcagcttgg cttgccagag ggcaaaaaaa tcgtgctcta
    12541 ttccggcaat atcggcgaaa aacaagggct ggaaaaggtg attgacgccg cagaacgatt
    12601 acgcgatcga ccgttgattt ttgcgattgt cggccagggg ggcggcaagg cgcggctgga
    12661 gaacatggcc cgcgaacgcg gcctgctaaa tattaaattc ctcccgctgc agccttacga
    12721 cgccttaccc gcgctgctga aaatgggcga ctgccatctg gtggtgcaaa agcgcggcgc
    12781 agcggatgcg gtactgccct ccaagctgac taacattctg gcggtcggcg gtaatgcggt
    12841 gattaccgct gagccgcaca ccgaattagg acaactttgc gcgcgctatc cgggcatcgc
    12901 cgtttgcgtg gagccggagt cgaccgacgc gctggtcgac gggattagcc aggcgctcgc
    12961 catgccgaaa aacaacacga cggcacgtga atacgccgaa cgcacgctca ataaagagaa
    13021 cgtgctacgc caatttattg cagatattcg gggatgataa tgcgtcagac aaaactttac
    13081 ccggttgtga tggccggtgg ctccggtagc cgattgtggc cgctttctcg cgtgctttat
    13141 ccaaaacagt ttttgtgcct gaaaggcgat ctcaccatgt tgcaaaccac catttgccgt
    13201 ctgaacggcg tggagtgcga aagcccggtg gttatctgca acgaacagca ccgttttatc
    13261 gtcgccgaac agctccgcca gctcaataag ctgacggaga acattattct tgagcccgcc
    13321 gggcgcaata ccgcgccggc gattgcgttg gcggcgctgg cagcgacgcg ccagcatacg
    13381 gactgcgatc cgctgatgct ggtactggcg gcggatcatg cgatcgccaa tgaagaggcc
    13441 ttccgcgacg cggtgcgcgg cgccatgccc tatgccgacg cgggcaaact ggtgaccttc
    13501 ggtatcgtgc cggatctgcc ggaaaccggc tatggctata tccggcgcgg tgatgtcgtg
    13561 ccgggcgcga cggatgcggt ggcttttgag gtggcgcagt tcgttgagaa gccggggctg
    13621 gaaaccgccc aggcctacgt cgccagcggc gattactact ggaacagcgg catgtttcta
    13681 ttccgcgccg gacgctatct ggaagagctg aaaaagttcc gccccgatat tctggccgcc
    13741 tgtgaacagg cgatgcgcgg cgtcgatccg gatcttgact tcattcgcgt ggatgaagag
    13801 gccttcctcg cctgtccgga agagtccatt gactacgcgg tgatggagcg gacggcggac
    13861 gcggtggtga tgccaatgga cgcgggctgg agcgatgtcg gctcgtggtc ctcactgtgg
    13921 gaaatcagcg cccacacccc ggagggaaac gtccaccacg gcgacgtcat cagtcataaa
    13981 acggaaaaca gctacgttta cgccgaatcc ggcctggtga ccaccgtcgg cgtgaaggat
    14041 ctggtggtgg tgcagaccaa agacgccgtg ctgattgccg atcgccacgc ggtgcaggac
    14101 gtgaaaaagg tggtggagaa gatcaaggcc gacggacgcc atgagcacca catgcaccgc
    14161 gaggtttacc gtccgtgggg caaatacgac tccatcgacg cgggcgagcg ctatcaggtg
    14221 aagcgcatta ccgttaagcc gggggaagga ctgtcggtgc agatgcacca tcaccgtgcc
    14281 gagcactggg tggtggtggc ggggaccgcc agagtcacca tcaacggcga ggttaagctg
    14341 ctcggtgaaa acgagtccat ctatattccg ctgggggcga cccactgcct ggaaaatccg
    14401 ggaaaaatac cgctcgattt aattgaagtg cgttccggct cgtatctcga agaggacgac
    14461 gtggtgcggt tcgaggaccg ttacgggcgg gtctgacgcc tgcaattatg cccggtaagc
    14521 gcaacgcgcc atccggcaat gaataacaat aacgatgttg gccatttgcg gtcagggcta
    14581 actgttgcct gaagaagggt aagcacatga caaaattaac ctgtttcaag gcctacgaca
    14641 ttcgcggcag gctgggcgaa gagctcaatg aagatatcgc gtggcggatt ggccgcgcct
    14701 atggcgaata tttaaaaccg aaaaccatcg tgctgggcgg cgacgtgcgc ctgaccagcg
    14761 aggtgctgaa gatggcgctg gcaaaagggt tacaggacgc gggcgtcgac gtgctggata
    14821 tcggtatgtc cggcaccgaa gagatttact tcgccacctt ccacctcggc gtggacggcg
    14881 gtattgaagt gaccgccagc cataacccga tggactacaa cggtatgaag ctggtgcgcg
    14941 agggcgcccg cccgataagc ggcgacaccg gtctgcgcga cgttcagcgc ctggcggaag
    15001 cgggcgactt cccgccggtc aacgacgcca cgcgcggcag ctacagacaa atcagcatgc
    15061 gcgacgccta catcgaccac ctgctcggct acatcagtgt taacaatctc accccgctga
    15121 agctggtgtt taacgccggc aacggcgcgg cggggccggt cattgacgcc attgaagcgc
    15181 gcctgaaggc gctgggcgcg ccggtggagt tcatcaaaat ccacaacacc ccggacggca
    15241 ccttcccgaa aggcattccc aacccgttgc tgccggagtg tcgcgacgac acccgcaagg
    15301 ccgttattga acacggggcg gacatgggca tcgcctttga cggcgacttc gaccgctgct
    15361 tcctgttcga tgagaaaggg aagtttatcg aggggtacta catcgtcggg ctgctggcgg
    15421 aagcgtttct ggaaaaacac ccgggggcga agattatcca cgacccgcgc ctgacctgga
    15481 acaccgaggc agtggtgacg gcggcgggcg ggacgccgat gatgtcaaaa accgggcacg
    15541 cctttatcaa ggagcggatg cgtacggagg atgccattta tggcggggaa atgagcgcgc
    15601 atcactattt ccgtgatttt gcctactgcg acagcgggat gatcccgtgg ctgctggtgg
    15661 cggaactggt atgcctgaag gggcagtcgc tgggtgaact ggttcgcgac cggatggcgg
    15721 cgttcccggc gagcggggaa atcaacagca gactggcgga gccggcggcg gccatcgcgc
    15781 gggtggaagc gcacttcgcg gaagaggcgc aggcagtgga ccgcacggac ggcctcagca
    15841 tgtcgttcgc cgactggcgt ttcaacctgc gctcgtcgaa caccgaaccg gtggtgcgcc
    15901 tgaatgtgga atcacgcggc gatattccgc tgatggaagc gcgaacacgc actctgctgg
    15961 cgctgctgaa tcagtaacgt cagatctccc cttaccgcct gcgggtaagg ggccaatcac
    16021 aggaacaacg atgacaaatc taaaaaagcg cgaacgagcc aaaaccaatg catcgttaat
    16081 ctctatggtg caacgctttt cagatatcac catcatgttt ggcgggctgt ggttcatctg
    16141 tgaagtcagt ggactgccat tcctgtacat gcacctgttg gtggcgctga ttacgctggt
    16201 tgtttttcaa atgctgggcg ggatgaccga tttttatcgc tcctggcgcg gcgtcaaaat
    16261 gtcgacagag ttaacgctgt tactgcaaaa ctggacgctg agcctgatct tcagcgccgg
    16321 tctggtggcg tttaatgatg actttgacaa ccgcctcgcc acctggttgg cctggtatgc
    16381 gctgtccagc ctgggcttag tgttatgccg ttcatttatt cgtttcggcg cgggctggct
    16441 acgcaatcgt ggttataaca ctcgccgggg cgccgtcgcc ggggatttgc ctgcgggcca
    16501 ggcgttgctg gatagcttcc gtaatgagcc gtggctgggt tttgaggtgg tgggcgtcta
    16561 tcacgatcct aaaccgggcg gcgtctctgc tgactgggcc gggaacttcg aacagttaat
    16621 tgacgatgcg aaagcctcgc gaattcacaa tgtttatatc gccatgtcaa tgagcgacgg
    16681 cgccatggtg aaaaaactgg tgcgcgagct ggccgacacc acctgctcgg tgatccttat
    16741 tcccgatgtg ttcaccttta atattctcca ctcgcgcgtg gaggagatga gcggcgttcc
    16801 ggtcgttccg ctgtatgaca cgccgctatc agggattaac cgtctgctta aacgggcaga
    16861 agatatcgtg ctggcgtcgc tgattctgct gctcatctca ccggtactgt gctgcattgc
    16921 gccggcggtc aaattgagct cgcccgggcc ggtgattttc cgtcagacgc gctacgggat
    16981 ggacggcaag ccgagcaaag tctggaggtt ccgctcaatg aaggtgatgg agaacgataa
    17041 ggtcgttacc caggcgacgc aaaacgatcc gcgcgtcacc cgggtaggta actttttgcg
    17101 tcgtacctcg ctggatgaat taccgcagtt tatcaacgta ttaaccggcg ggatgtctat
    17161 cgtcggtcct cgcccgcacg cggtggcgca taacgaacag tatcgtcagt tgattgaagg
    17221 ttacatgcta cgccacaaga tgaagccggg catcaccggc tgggcgcaaa ttaatggctg
    17281 gcgcggtgag accgatacgc tggagaaaat ggaaaaacgc gtggaattcg acctggaata
    17341 catccgcgaa tggagtattt ggttcgatat caaaatcgtt tttctgacga tttttaaagg
    17401 gtttgttaat aaagcggcgt attaagaacc tgacccacaa ggctatttta cttgccatat
    17461 tgcaccaggg cagtgctcaa tctggctgcg ccaatgacgc cttgtgaaca ggttctggag
    17521 aaaagaatga gtttacgaca aaaaacgatc agcggcgtta aatggtcggc tatcgccacg
    17581 atagtgatta tcggtctggg gttaattcag atgacggtgc tggcgcggat catcgacaac
    17641 caccagtttg gcctgttgac cgtatcgctg gtgattatcg cgctggccga cacgatttcg
    17701 gactttggca tcgcgaactc gattatccag cgtaaaacga ttgggcatct ggagctgacc
    17761 acgctttact ggctaaacgt tgggcttggg attgtggtat ttgcggtggt cttttggctg
    17821 agcgatgcga ttgcccatgt tttgcataac ccggatctcg cgccgttaat caaaacgttg
    17881 tcgctggcgt tcatcgtgat ccctcacggg cagcagttcc gcgcgctgat gcaaaaagag
    17941 ctggagttca ataagatcgg catgatcgaa acgacctccg tgctggcggg gttcaccttt
    18001 acggtgatta gcgcccatta ctggccgctg gcgttaaccg cgattctcgg ctatctggtg
    18061 aacagcgcgg tgcgaacgct gctgtttggt tactttggcc gcaagattta ccgtccgggg
    18121 ctgcattttt cgctggcatc ggtgtccacg aacctgcgtt ttggcgcgtg gctgacggcg
    18181 gacagtatcg tcaattacat caacacgaat ttatcgacgc tggtactggc gagaattctc
    18241 ggcgcaagcg tcgccggggg atataacctc gcgtacaacg tggctgttgt gccgccggcg
    18301 aagcttaacc ccatcattac tcgcgtgcta tttccggcat tcgccaaaat ccaggacgat
    18361 accgagaagc tgcgcgtcaa cttctataag ttgctttccg tggtgggaat tatcaatttt
    18421 cccgcgctgt tgggcctgat ggtagtggcg aacaattttg tgccgttagt gtttggtgag
    18481 aagtggaaca gcattatccc gatcctgaaa ttgctgtgcg ttgtggggct gctgcgctca
    18541 gtcggcaacc cgattggttc gctgctgatg gcgaaagcgc gcgtggatat cagctttaag
    18601 ttcaacgtct ttaaaacgtt tctgtttatc ccggcaattc tcattggcgg ccatctggcg
    18661 ggggcgattg gcgtgacgct ggggttcctg gtggtgcaaa tcatcaacac cattctgagc
    18721 tatttcgtga tgattaagcc ggtactcggc tccagctacc gtcagtatat tctcagcctg
    18781 tggctaccgt tttatctctc attgcccaca tttattacca gctacggcgc aggaaagcta
    18841 gtcgacggct atttaccgtt gtcaggggta ttcgcgctac aggttgtggt cggtattttg
    18901 agttttattt taatgattat tttttcacgc aatgcgctgg tgatggaaat taaaaatcag
    18961 cttgttggca gtgaaaaaat gaaaaa
//
LOCUS       DAJVSD010000063        18833 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.063, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000063 DAJVSD010000000
VERSION     DAJVSD010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 18833)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18833)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18833
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.063"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..149)
                     /locus_tag="OQP62_001838"
     CDS             complement(<1..149)
                     /locus_tag="OQP62_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2167 domain-containing protein"
                     /protein_id="HCS1721410.1"
                     /translation="MAFRFPQIILFLLAAMLFCPSSYAEQKPTAAQEARKTAVEVAVE
                     GMSRAA"
     gene            complement(320..1795)
                     /gene="modF"
                     /locus_tag="OQP62_001839"
     CDS             complement(320..1795)
                     /gene="modF"
                     /locus_tag="OQP62_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter ATP-binding protein
                     ModF"
                     /protein_id="HCS1721411.1"
                     /translation="MSSLQISQGTFRLSDTKTLHLDSLTLNAGDSWAFVGANGSGKSA
                     LARALAGELPLLTGERQCQFTRITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTT
                     AEIIQDDVHHPARYAMLAQQFGISALLNRRFKYLSTGETRKALLCQALMSEPELLILD
                     EPFDGLDVTARQQLAQRLTALNQAGMTLALVLNRFDEIPDFVQFAGVLADCTLAETGT
                     TAELLQRALVAQLAHSERLTDVQLPEPDEPSARHALPDGEPRIVLNDGVVSYNDRPIL
                     HHLSWRVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI
                     KKHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQAVSDRQRKLAQQWLDILGIDK
                     RTADAPFHSLSWGQQRLALIVRALVKHPTVLILDEPLQGLDPLNRQLVRRFVDVLIRQ
                     GETQLLFVSHHAEDAPACITHRLEFVPEGERYKYVSGRCNN"
     gene            complement(1863..2651)
                     /gene="modE"
                     /locus_tag="OQP62_001840"
     CDS             complement(1863..2651)
                     /gene="modE"
                     /locus_tag="OQP62_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-dependent transcriptional regulator"
                     /protein_id="HCS1721412.1"
                     /translation="MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGIS
                     YKSAWDAINDMNQLSEHMLVERATGGKGGGGAVLTRYGQRLIQLYDLLGQIQQKAFDV
                     LSDDDALPLDSLLAAISRFSLQTSARNQWFGTITARDRDQVQQHVDVLLADGKTRLKV
                     ALTAQSGERLGLEEGKEVLILLKAPWVGITRDAAVARAADNQLSGTISHIERGAEQCE
                     VLMALPDGQTLCATIPTADAATLKEGDDVIAWFNADRVIIATLC"
     gene            2780..2929
                     /locus_tag="OQP62_001841"
     CDS             2780..2929
                     /locus_tag="OQP62_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcrZ family multidrug efflux pump-associated
                     protein"
                     /protein_id="HCS1721413.1"
                     /translation="MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGIGQKDQ
                     SRQNR"
     gene            3096..3869
                     /gene="modA"
                     /locus_tag="OQP62_001842"
     CDS             3096..3869
                     /gene="modA"
                     /locus_tag="OQP62_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1721414.1"
                     /translation="MAHSWLRLVAGATLSFVIAGHALADEGKITVFAAASLTNAMQDI
                     AAEYKKEKNVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAADKKAVDTTTRE
                     TLLGNSLVVVAPKASEQKPFTIDNKTDWIHLLNGGRLAVGDPQHVPAGIYAKEALQKL
                     GAWQTLEPKLAPGEDVRGALALVERNEAPLGIVYGSDAVASKGVNVVATFPEDSHKKV
                     EYPIAIVEGHKNAAVSAFYDYLKGPQASAIFKRYGFTTK"
     gene            3869..4558
                     /gene="modB"
                     /locus_tag="OQP62_001843"
     CDS             3869..4558
                     /gene="modB"
                     /locus_tag="OQP62_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HCS1721415.1"
                     /translation="MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCRFPGK
                     ALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGQWLYDWFGLTFAFSWRGAVLAAAVM
                     SFPLMVRAIRLALEGVDIKLEQAARTLGAGRWRVFLTITLPLTLPGIIVGTVLAFARS
                     LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESAAARLCVISIVLALISLLISEW
                     LARISRERTGR"
     gene            4561..5619
                     /gene="modC"
                     /locus_tag="OQP62_001844"
     CDS             4561..5619
                     /gene="modC"
                     /locus_tag="OQP62_001844"
                     /EC_number="7.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter ATP-binding protein
                     ModC"
                     /protein_id="HCS1721416.1"
                     /translation="MLELNFSQTLGTHCLTLNETLPASGITAIFGVSGAGKTSLINAI
                     SGLTRPRKGRIVLNGRVLHDAENGICLTPEKRRIGYVFQDARLFPHYKVRGNLRYGMA
                     KSMTGQFDKLVSLLGIEALLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLD
                     IPRKRELLPYLQRLAREINIPMLYVSHSLDEILHLADKVMVLEDGQVKAFGPLEEVWG
                     SSVMHPWLPKEQQSSILKVSVLEHHPHYAMTALALGDQHLWVNKLNQPLQSTLRIRIQ
                     ASDVSLVLQPPQQTSIRNVLRAKVANCYDDNGQVEVQLEIGGRTLWARISPWARDELN
                     IKPGLWLYAQVKSVSITA"
     gene            complement(5620..6438)
                     /locus_tag="OQP62_001845"
     CDS             complement(5620..6438)
                     /locus_tag="OQP62_001845"
                     /EC_number="3.1.3.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphatase"
                     /protein_id="HCS1721417.1"
                     /translation="MTARVIALDLDGTLLTPHKTLLPSSLEALSRAKEAGFQLIIVTG
                     RHHVAIHPFYQALALETPAICCNGTYLYDYQAKTVLDADPMPVDKALQLIDLLDEHQI
                     HGLMYVDDAMLYEHPTGHVVRTSRWAQTLPPEQRPTFTQVSSLAQAARDVNAVWKFAL
                     TDEDIPRLQRFGQHVEQALGLECEWSWHDQVDIARKGNSKGKRLTQWIEAQGGSMKNV
                     IAFGDNYNDISMLEAAGTGVAMGNADEAVKARADFVIGDNTTDSIAKFIYTHLL"
     gene            6602..7597
                     /gene="pgl"
                     /locus_tag="OQP62_001846"
     CDS             6602..7597
                     /gene="pgl"
                     /locus_tag="OQP62_001846"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HCS1721418.1"
                     /translation="MKQTVYTASPESQQIHVWSLNHEGTLTLVQVVDVPGQVQPMVVS
                     PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHHGRFVFVGSYN
                     AGNVSVTRLQDGLPVELVDVVEGLDGCHSANITPDNRTLWVPALKQDRICLFTLSDDG
                     HLVAQEPAEVNTVEGAGPRHMVFHPNRQYAYCVNELNSSVDVWQLKNPHGEIECVQTL
                     DMMPADFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSVEGFQPTEAQ
                     PRGFNIDNSRKYLIAAGQKSHHIAVYEITGTQGLLTEKGRYAVGQGPMWVVVNAY"
     gene            complement(7741..9024)
                     /locus_tag="OQP62_001847"
     CDS             complement(7741..9024)
                     /locus_tag="OQP62_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyl-CoA thioester hydrolase"
                     /protein_id="HCS1721419.1"
                     /translation="MNTLSVSRLALALAFGVTLSACSSTPPDQIPSDQTAPGTASRPI
                     LSANEAKNFVAARYFASLTPNTAPWSPSPITLPAQPDFVVGPAGTPGVTHTSIQAAID
                     AAMVKRTNKRQYIAIMPGDYQGTVYVPAAPGSLTLYGTGEKPIDVKIGMAIDGEMSVA
                     DWRRAVNPGGKYMPGKPAWYMFDNCQSKHAATIGVMCSAAFWSQNNGLQLQNLTIENT
                     LGDSVDAGNHPAVALRTDGDKVQINKVNILGRQNTFFVTNSGVQNRLQTDRQPRTLVT
                     NSYIEGDVDMVSGRGAVVFDNTNFQVVNSRTQQEAYVFAPATLSNIYYGFLAINSRFN
                     ASGDGVAQLGRSLDVDANTNGQVVIRDSVINEGFNVAKPWADAVISKRPFAGNTGTVD
                     DKDEVQRNLNDTNYNRMWEYNNRGVGSKVVTEPKQ"
     gene            9262..10485
                     /locus_tag="OQP62_001848"
     CDS             9262..10485
                     /locus_tag="OQP62_001848"
                     /EC_number="3.5.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazolonepropionase"
                     /protein_id="HCS1721420.1"
                     /translation="MRQLLPGDTVWRNIRLATMDPQRQAPYGLVDSQALIVREGHICD
                     IVPETQLPVSGDNIHDMQGRLVTPGLIDCHTHLVFAGNRAAEWEQRLNGASYQHISAQ
                     GGGINATVSATRACAEETLYLLARERMMRLASEGVTLLEIKSGYGLELATEEKLLRVA
                     AKLAAENAIDISPTLLAAHATPAEYRDDPDGYITLVCETMIPQLWQKGLFDAVDLFCE
                     SVGFNVAQSERVLQTAKALGIPVKGHVEQLSLLGGAQLVSRYQGLSADHIEYLDEAGV
                     AAMRDGGTVGVLLPGAFYFLRETQRPPVELLRRYQVPVAVASDFNPGTSPFCSLHLAM
                     NMACVQFGLTPEEAWSGVTRHAARALGRQATHGQIRAGYRADFVVWDAEQPVEIVYEP
                     GRNPLYQRVYRGQIS"
     gene            10482..11423
                     /locus_tag="OQP62_001849"
     CDS             10482..11423
                     /locus_tag="OQP62_001849"
                     /EC_number="3.5.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formimidoylglutamase"
                     /protein_id="HCS1721421.1"
                     /translation="MTQWYPASPALWQGRDDSIEAPDARRLFQTVTRSEAFFPENWQQ
                     KIALMGFACDEGVKRNSGRPGAAGGPDALRKALANMASHQGHERLVDLGNWVAPTPDL
                     EGAQQALRDAVSRCLRAGMRTLVMGGGHETAFGHGAGVLDAFAQESVGIINLDAHLDL
                     RQTDRATSGTPFRQLAQLCDAQSRAFHYACFGVSRAANTQALWREAQWRNVTVVEDLD
                     CHDALAQMTQFIDKVDKIYLTIDLDVLPVWEMPAVSAPAALGVPLIQVLRLIEPVCRS
                     GKLQAADLVEFNPRFDEDGAAARVAARLGWQIAHWWR"
     gene            11468..12193
                     /locus_tag="OQP62_001850"
     CDS             11468..12193
                     /locus_tag="OQP62_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine utilization repressor"
                     /protein_id="HCS1721422.1"
                     /translation="MYSSRSRSAPAPFYETVKQDICKKIAGGVWQPHDRIPSEAELVA
                     QYGFSRMTINRALRELTDEGWLVRLQGVGTFVAEPKGQSALFEVRSIAEEIAARHHQH
                     RCEVLTLERVRANAIQASALNVNESDVIFHSIMVHYENDLPVQIEDRCVNADIAVDYL
                     TQDYRQTTPHAYLSRIAPLTEGEHIVEAVRATAQECAWLTIKEHEPCLLIRRTTWSAS
                     RIVSHARLLFPGSRYRLQGRFIS"
     gene            12389..14074
                     /gene="hutU"
                     /locus_tag="OQP62_001851"
     CDS             12389..14074
                     /gene="hutU"
                     /locus_tag="OQP62_001851"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017441920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HCS1721423.1"
                     /translation="MPESKYRQQTIRAPRGTVLTAKSWLTEAPLRMLMNNLDPDVAEN
                     PHELVVYGGIGRAARNWECYDAIVDALTRLEADETLLIQSGKPVGVFKTHDNAPRVLI
                     ANSNLVPHWATWEHFNELDAKGLAMYGQMTAGSWIYIGSQGIVQGTYETFVEAGRQHY
                     NGTLAGRWALTAGLGGMGGAQPLAATLAGACSLTIECQQSRIDFRLRTRYVDEQAATL
                     DDALARITRYTREGKAVSVALCANAADILPELVNRGVRPDLVTDQTSAHDPLHGYLPS
                     GWCWEEYQKNAQSDPRGTMQAAKRSMAAHVRAMLAFSKMGVPTFDYGNNIRQMAKEMG
                     VENAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIVAEDKHLHHW
                     LDMARERIHFQGLPARICWVGLEWRQKLGLAFNEMVRCGEVSAPIVIGRDHLDSGSVA
                     SPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHAGMVIVCD
                     GTDEAAARIRRVLHNDPATGVMRHADAGYDLAVECAVEQGLNLPMVAATQGKG"
     gene            14076..15596
                     /gene="hutH"
                     /locus_tag="OQP62_001852"
     CDS             14076..15596
                     /gene="hutH"
                     /locus_tag="OQP62_001852"
                     /EC_number="4.3.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ammonia-lyase"
                     /protein_id="HCS1721424.1"
                     /translation="MNTMTLTPGQLSLSQLYDVWRHPVQLRLDASAIDGINASVACVN
                     DIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGVGDPLDDAMVRLIMV
                     LKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGE
                     GKARWQGEWLPAQAALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFAS
                     AVVCGALTTEAVLGSCRPFDARIHAARGQQGQIDVARLFRHLLTDTSAIAESHHHCHK
                     VQDPYSLRCQPQVMGACLTQLRQTKEVLLAEANAVSDNPLVFAEAGEVISGGNFHAEP
                     VAMAADDLALAIAEIGALSERRITLMMDKHMSQLPPFLVKNGGVNSGFMIAQVTAAAL
                     ASENKALAHPHSVDSLPTSANQEDHVSMAPAAGRRLWEMAANTRGVIAVEWLAACQGI
                     DLREGLTSSPLLEQARQTLRERVAHYTQDRFFAPDIECATTLLAQGALQRLVPDFM"
     gene            complement(15681..16157)
                     /locus_tag="OQP62_001853"
     CDS             complement(15681..16157)
                     /locus_tag="OQP62_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase inhibitor"
                     /protein_id="HCS1721425.1"
                     /translation="MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPMGTK
                     SFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLTQGFGSGLVAVPDGVIQTRTDFGKAG
                     YGGAAPPKGETHRYIFTVHALDVERLDVDEDASGAMVGFNVHFHSLASASITAMFS"
     gene            complement(16215..17504)
                     /gene="bioA"
                     /locus_tag="OQP62_001854"
     CDS             complement(16215..17504)
                     /gene="bioA"
                     /locus_tag="OQP62_001854"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HCS1721426.1"
                     /translation="MTTDDLAFDKRHIWHPYTSMTSPLPVYPVERAEGCELVLASGER
                     LIEGMSSWWAAIHGYNHPQLNAAMKAQIDAMSHVMFGGITHQPAVNLCRKLVAITPEP
                     LECVFLADSGSVSVEVAMKMALQYWQARGESRQRFLTFRHGYHGDTFGAMSVCDPDNS
                     MHSLWKGYLPENLFAPAPQSRMDGEWDESDIAPFARLMAAHRHEIAAVILEPIVQGAG
                     GMRIYHPQWLRRIRNMCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILCLGKAL
                     TGGTMTLSATLTTRQVAETISNGEAGCFMHGPTFMGNPLACAVACASLTLLESGEWRQ
                     QVASIESQLRAELAPAQSSPWVADVRVLGAIGVVETTHPVNMAALQRFFVGQGVWIRP
                     FGKLIYLMPPYIIRPDQLRRLTQAVNDAVHNETFFSH"
     gene            17591..18631
                     /gene="bioB"
                     /locus_tag="OQP62_001855"
     CDS             17591..18631
                     /gene="bioB"
                     /locus_tag="OQP62_001855"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HCS1721427.1"
                     /translation="MARHPRWTLSQVTELFEKPLLELLFEAQQIHRQHFDPQQVQVST
                     LLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLDSARKAKNAGSTRFCMGAAW
                     KNPHERDMPYLEKIVQGVKAMGLETCMTLGMLNESQAQRLANAGLDYYNHNLDTSPEF
                     YGNIITTRTYQERLDTLEKVREAGIKVCSGGIVGLGETVTDRAGLLLQLANLPTPPES
                     VPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMC
                     FMAGANSIFYGCKLLTTPNPAEDKDLQLFRKLGLNPQQTRVLAGDNEQQQRLEQTLMT
                     PDTDDYYNAAAL"
     gene            18628..>18833
                     /locus_tag="OQP62_001856"
     CDS             18628..>18833
                     /locus_tag="OQP62_001856"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459773.1"
                     /note="catalyzes the formation of 8-amino-7-oxononanoate
                     from 6-carboxyhexanoyl-CoA and L-alanine; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HCS1721428.1"
                     /translation="MSWQQRVDDALTARRATDTLRRRYVVSQGAGRWLVANGRQYLNF
                     SSNDYLGLSQHPQIIRAWQQAATR"
BASE COUNT         4084 a         5028 c         5567 g         4154 t
ORIGIN      
        1 gcggcgcgac tcatgccttc aacagcgacc tcaacggcgg ttttacgcgc ttcctgcgca
       61 gcggtcggct tttgctcagc ataactgctg gggcaaaata acatggctgc cagtaaaaat
      121 agtattattt gtggaaaacg aaaagccata atgaatccct tgtattcaca tacgacatca
      181 ttgtcgaaaa tttcaggatt attatgacaa tgaggcggtc agcgattcaa gagatagtaa
      241 gcttatcgac cgttattatt attcttaata aaaggagagt ggttccagaa tggcgcgcgg
      301 cgccattctg ataatacatt taattattgc atcgtccgga aacgtactta taacgttcgc
      361 cctctggtac aaattccagc cggtgggtaa tacaggcagg cgcatcctct gcatgatggg
      421 aaacgaacag cagttgagtc tctccctggc gaattaatac atccacaaaa cggcgtacca
      481 gttggcggtt cagcgggtcc aacccttgca gcggctcatc cagaatcaac actgtcggat
      541 gtttaaccag cgcgcgcacg attagcgcca gccgctgctg tccccaagag agactgtgga
      601 agggggcatc cgccgtacgc ttatcgattc ccagaatatc cagccactgt tgcgccagtt
      661 ttcgttgcct gtctgaaacg gcctggtaaa tgccgataga atcgaaatag ccggagagaa
      721 tgacattgcg taccgtggta ctgacgcggt aatccagatg taaactgctg ctgacgtagc
      781 cgatatgttt tttgatatcc cagattgttt cgccgcttcc tcgccgccgc ccgaacagcg
      841 taagatcgtt gctgtagcct tgcggatgat cgccagtaat aaggctaagc aacgtagact
      901 tacccgctcc gttaggaccg acgatctgcc agtgttcgcc cggattgact cgccagctta
      961 ggtggtggag gatagggcga tcgttatacg agactacgcc atcgttaagt acgatccgtg
     1021 gttcgccatc gggtaacgca tggcgggcgg aaggttcgtc cggttcgggt aattgtacgt
     1081 cggtcagacg ctcgctgtgc gcgagttgag cgaccaacgc ccgttgcagt aactctgccg
     1141 tcgttccggt ctccgccagc gtacagtcgg caagcacgcc ggcaaactgc acgaagtccg
     1201 ggatctcatc aaaacggttg agtaccagcg ccagggtcat acccgcctgg ttcaacgccg
     1261 tcaggcgttg tgccagttgt tgacgggcgg tcacgtcaag tccgtcgaac ggttcatcaa
     1321 ggattaataa ctccggctca gacatcagcg cctgacacag cagcgctttt cgcgtctcgc
     1381 cggtagaaag gtatttaaaa cgcctgttga gtaaagcgga aatgccaaac tgctgcgcca
     1441 gcatcgcata gcgggcagga tggtgaacat catcctgaat aatttccgcg gtagtgcgcc
     1501 cggtatcgtc ttcgccagga ctgagcatat cggtgttatt acgttgccac tcatcgctga
     1561 ccagcttttg caattgttca aaggacagac gggtaatgcg ggtaaactga cactggcgct
     1621 cgcctgttaa taatggcagt tcacccgcca gcgcgcgggc gagcgccgac ttcccgctcc
     1681 cgttagcccc aacgaatgcc cagctatcgc ccgcattgag cgtcagcgaa tccagatgaa
     1741 gtgtttttgt atcgctcaga cgaaacgtgc cttgcgaaat ttgcaacgat gacattttgc
     1801 atcccatttt ttgcagcgat gaatgacagg gatacgtctt tcggcaacgg atgtcaatgt
     1861 gcttagcaca acgttgcaat aatcactctg tccgcattaa accaggcaat cacgtcatcg
     1921 ccttccttta acgtggcggc atccgcagtc ggtatcgtgg cgcacagcgt ctggccgtcc
     1981 ggcagcgcca tcaacacttc acactgttcc gcgccgcgct cgatatggct gatcgttccc
     2041 gacaactgat tgtcagctgc gcgcgcaacg gctgcatccc gggtaatgcc aacccacggc
     2101 gcttttagca ggatcagcac ttcttttccc tcctccaggc cgagacgctc gccgctttgc
     2161 gccgtcagcg cgactttgag ccgcgttttg ccgtcggcca gcagcacgtc gacatgctgt
     2221 tgcacctgat cgcgatcgcg ggcggtaatg gtgccgaacc actgatttcg ggcgctggtt
     2281 tgcagtgaaa agcgggagat agcggccagc agactgtcaa gcggcagggc gtcatcgtcg
     2341 cttaacacat cgaacgcttt ttgctgaatt tggcccagca aatcgtaaag ctggatcaga
     2401 cgctgaccat agcgggttaa taccgcgccg ccgccgcctt tgccgcccgt tgcgcgttca
     2461 accagcatat gttcgctaag ctggttcatg tcgtttatcg catcccaggc gctcttatag
     2521 ctgattcccg cgtctttcgc gccctgacta atcgagccgg aaagcgcaat gtgtttcagc
     2581 agagagatac gtcggggatc ggcaaaaagc ttttgctgaa gtttcagggt aagaaggatt
     2641 tcggcctgca taaccagctc ctagtaaaaa gactattgtg actgaaaagc gcgtcagcgc
     2701 aaagccgacc gcacaaaagg ggagtgcttt tctgtgtgat gcggttaaaa tacaaaaagg
     2761 actatatctg gagttgccca tgttagagtt attaaaaagt ctggtattcg ccgtcatcat
     2821 ggtaccggta gtgatggcca tcatcctcgg tctgatttac ggtctgggtg aggtgttcaa
     2881 cattttttcc ggtatcggtc agaaagacca gtccagacag aaccgctgat ttccccaaac
     2941 gcccgctcag tcgggcgttt ttgttactca agatcctgct tttcctgccg atattttctg
     3001 tgtttaatcg ttaatgggta tgaataaccg ctgggaaacc cctgagatta tcgttatatt
     3061 gttgtttaca taacgaaacg cacaaggagt tacagatggc gcattcctgg ttacgcctgg
     3121 tcgcaggggc gacattatct ttcgtcatcg ctggtcatgc gctggcggat gaaggcaaga
     3181 tcaccgtatt cgccgccgcg tcgctaacga acgcgatgca agacattgcg gcagaatata
     3241 aaaaagagaa aaatgtggat gtggtctcct cattcgcctc ctcttcaacg ctggcgcgcc
     3301 agatagaagc gggcgcgccg gcggacctgt tcatctctgc tgatcagaaa tggatggatt
     3361 acgcagccga taaaaaagcg gtggatacca cgacgcgcga aacattgctt ggcaatagcc
     3421 tggtagtggt agcgccgaaa gccagcgagc agaaaccgtt taccatcgac aacaaaacgg
     3481 actggattca tctgctgaac ggcgggcgtc tggcggtggg cgatccgcaa cacgtaccgg
     3541 cgggaattta tgccaaagaa gcgctgcaaa agctgggcgc atggcaaacg cttgaaccga
     3601 aactggcgcc gggcgaggat gtgcgcggtg cgttggcgtt ggtcgaacgt aacgaagcgc
     3661 ctttaggcat tgtatacggt tctgatgcgg tcgccagcaa gggggtcaac gtggtggcga
     3721 cgttcccgga agattcacat aaaaaagtgg aataccccat cgctatcgtg gaggggcata
     3781 aaaatgcggc cgtcagcgcg ttctatgatt acctgaaagg accgcaggcc tcggcaatct
     3841 ttaaacgtta tggatttacg acgaagtaat gatactgacc gatccagaat ggcaggctgt
     3901 ccttcttagc ctgaaagtgt cttccctggc cgtgctgttt agcctgccgt ttgggatctt
     3961 ttttgcctgg ttactggtgc gatgccggtt tccgggcaaa gccttacttg atagtgtcct
     4021 gcatctgccg ctggtgctgc cgccggtggt ggtcggctat ctgctgctgg tgtcgatggg
     4081 gcgacgcggg tttattggcc agtggctgta tgactggttc ggtctcacgt ttgcctttag
     4141 ctggcgcggc gccgtgctgg cggcggcggt gatgtccttc ccgctgatgg tgcgggccat
     4201 tcggctggcg ctggaggggg tggatatcaa gcttgaacag gccgccagaa cgctgggcgc
     4261 cgggcgctgg cgcgtttttc tgactatcac cttaccgctt accctgccgg gtattattgt
     4321 tggtacggtg ctggcgtttg cccgttcgct tggcgaattt ggcgcgacca ttacctttgt
     4381 ttccaatatt ccgggcgaaa cccgcaccat accttccgcc atgtatacct tgatccagac
     4441 gccgggcggg gagagcgcgg cggcgaggct gtgcgtgatt tcgattgtat tagcgctgat
     4501 ttcgctgttg atttctgaat ggctggcgcg gattagccgt gaacggacgg ggcgctaacc
     4561 atgctggagc ttaatttttc ccagacgctg ggaacgcact gtttaaccct caacgaaacg
     4621 ctgccagcca gtgggatcac ggctatcttt ggcgtctccg gcgcgggaaa aacctcgctg
     4681 attaatgcca tcagcggttt gactcgcccg cgaaaaggac gcatcgtgct gaatggccgg
     4741 gtgttgcatg acgcggaaaa cggtatctgt ttaacgccgg aaaagcgccg catcggttat
     4801 gttttccagg atgcgcgcct gttcccccat tacaaagtac gcggcaattt gcgctatggc
     4861 atggcgaaaa gcatgaccgg tcagtttgat aagctggtgt cgctgctggg aattgaagcg
     4921 ttgcttgatc gcctgccggg gagcctgtcc ggcggagaaa aacagcgcgt agcgataggc
     4981 cgggcattgc tcaccgcccc ggagttgctg ctgttggacg aaccgttggc ctcgctggat
     5041 atcccgcgta aacgcgaatt actgccgtac ctgcaacggc tggcgcgaga aatcaatatt
     5101 cccatgctgt atgtcagcca ttctctcgat gaaattctcc acctggcgga taaagtcatg
     5161 gtgctggagg atggacaggt taaagcgttt ggcccgctgg aagaagtctg gggaagcagc
     5221 gttatgcacc cgtggctgcc gaaagagcaa cagagcagta ttctgaaagt cagcgtgctg
     5281 gagcatcacc cgcattatgc catgaccgct ctggcgcttg gcgaccagca cctgtgggta
     5341 aataaactca atcagccgct gcaatccaca ctgcgtattc gtatacaggc gtcggatgtc
     5401 tcgctggtac tacagccgcc gcagcagacc agtatccgca acgtattacg ggcaaaagtg
     5461 gcgaattgtt atgacgataa cgggcaggtg gaagtccagc ttgaaatagg cggcagaacg
     5521 ctgtgggcgc gaataagccc gtgggccagg gatgagctga atatcaagcc tggcctgtgg
     5581 ctttacgcgc aggtgaaaag cgtttctatc accgcctgac tatagcaggt gggtgtatat
     5641 aaatttggcg atgctatcgg tagtgttatc gccgatcaca aagtcagcgc gcgctttcac
     5701 cgcctcatcg gcgttgccca tcgcaacgcc ggtgcctgcc gcctccagca tactgatgtc
     5761 gttgtagtta tcgccgaaag cgatcacatt tttcattgac cctccctgcg cttctatcca
     5821 ctgggtaagg cgcttgcctt tactgttgcc tttgcgcgcg atatccacct gatcgtgcca
     5881 tgaccattca cactccaggc caagcgcctg ttcaacatgc tgaccgaacc gctgtagtct
     5941 gggaatatct tcatcggtaa gcgcaaactt ccacacggca ttcacgtcgc gcgccgcctg
     6001 cgccaacgaa gagacctgtg taaaggtcgg acgttgctcc ggcggcaagg tctgcgccca
     6061 ccgggaggta cgcacgacgt gaccggttgg gtgttcgtaa agcatagcgt catcaacata
     6121 catcaggccg tgaatctgat gctcatccag taaatcaatc aactgcaacg ccttatccac
     6181 gggcatagga tcggcatcca ggacagtttt agcttgataa tcatacaaat aggtgccgtt
     6241 gcagcaaata gcaggtgttt ccagcgccag cgcctgataa aaaggatgaa tagcaacgtg
     6301 atggcgacca gtgacaatga taagttgaaa gcccgcctct ttggcgcgtg atagcgcttc
     6361 aagcgaggag gggagtaagg ttttatgcgg ggttaataat gttccgtcta aatcgagggc
     6421 aatcacgcgt gcagtcataa ttttttccag attaagagta ataattccgt ctgtcggcat
     6481 ggtacaccgg gacggtaagc agacaaaatt ctgcgtctga attcagcatt cgccgtcaaa
     6541 agcgactacg ttaagctgtg tcctgttatt gcagctacat gccatatgca aaggagtatt
     6601 catgaaacaa acagtctata ccgccagccc tgagagtcag caaattcacg tctggagcct
     6661 gaaccacgaa gggacgctga cgctggtgca ggtcgtggat gtgcccggtc aggttcagcc
     6721 gatggtggtc agtccggata aacgctacct ctatgtcggc gtgcgcccgg agtttcgtgt
     6781 cctggcgtat cgtattgcgc cggatgatgg cgcgctgacg tttgccgccg aatccgccct
     6841 gccgggtagc ccgacccata tttctaccga tcatcatggt cgttttgtct ttgtcggatc
     6901 gtataacgcc ggtaatgtca gcgtgacgcg cttacaggat ggcctgccgg ttgagctggt
     6961 ggatgtggtg gaagggctgg acggctgcca ctcggcaaat attacgccgg ataaccgtac
     7021 cctgtgggtg cctgcgctaa aacaggatcg catttgtctg tttacgctaa gcgatgacgg
     7081 ccatctggtg gcccaggagc cggcggaagt aaatacagtt gaaggggcag gcccgcgtca
     7141 tatggtcttc cacccgaatc gacaatatgc gtattgcgtc aatgaactga acagttcggt
     7201 ggatgtctgg cagcttaaaa atccgcatgg cgagatagag tgcgtacaaa ccctggatat
     7261 gatgcccgcc gatttttccg atacccgctg ggcggcggat attcatatta cgccggatgg
     7321 acggcatctg tatgcctgtg accgcaccgc cagtctgatt accgtcttta gtgtctccga
     7381 agatggcagc gtactgagcg ttgaaggctt ccagccgacg gaagcccaac cgcgcggctt
     7441 taatatcgac aacagcagga aatacctgat tgctgcgggt caaaaatcac atcatatcgc
     7501 ggtctatgaa attacgggca ctcaggggtt gctgacggaa aaaggccgtt atgccgtcgg
     7561 ccaggggcca atgtgggttg tggtgaacgc gtactaaagc gctgtgtgcc ggagggcggc
     7621 gggctggagc tcaccagggc aggatgcctg attaatttca ataaacatcg cttgcagtaa
     7681 aaccacgggc cgccacatct gctgcggcgg cccgtttata agcctgaacc ggaacggcga
     7741 ttactgctta ggttccgtca ctactttact gcctacaccg cggttgttgt attcccacat
     7801 gcggttgtag ttcgtgtcgt tcagattacg ctgcacctcg tctttgtcat ccacggttcc
     7861 cgtatttcca gcaaacggac gtttcgagat gaccgcgtcg gcccacggtt tggcaacgtt
     7921 gaagccctcg ttaatcacgc tgtcgcggat cacgacctga ccgttggtgt tggcgtcgac
     7981 atccagcgag cggccaagct gcgcaacgcc atcgccggag gcgttaaagc ggctgttgat
     8041 cgccaaaaag ccatagtaaa tattggacag cgtcgccggg gcgaagacgt aggcttcctg
     8101 ctgtgtgcgg gagttgacga cctggaagtt ggtgttatcg aacaccacgg cgccgcgtcc
     8161 ggaaaccata tccacatcgc cttcaatata gctgttcgtc accagcgtac gcggctggcg
     8221 atcggtttgc agacggttct gcacgccgct gttggtcaca aagaaggtgt tctggcggcc
     8281 aaggatattg accttgttaa tctggacttt gtcgccatcg gtacgcagcg ccaccgccgg
     8341 atggtttccg gcatcgacac tgtcgcccag cgtgttctcg atggtcagat tttgtagctg
     8401 cagaccgtta ttctgcgacc agaacgcggc agaacacatt acaccgatcg tcgcggcgtg
     8461 tttgctttgg cagttatcga acatatacca ggcgggttta ccaggcatat atttcccgcc
     8521 gggattcact gcgcggcgcc agtcagcgac actcatttca ccatcaatcg ccatcccaat
     8581 ttttacatcg atcggttttt caccggtccc gtacagggtc agacttcccg gcgcggcggg
     8641 aacatacacg gtcccctgat agtcgcccgg cataatagca atgtactggc gtttgttcgt
     8701 gcgtttaacc attgccgcat cgatcgcggc ctgaatcgag gtgtgcgtaa cgcctggcgt
     8761 acctgccggc cccaccacaa agtcaggctg tgcgggcagg gtaatcggcg acggcgacca
     8821 cggggcggta ttcggcgtca gggaggcaaa atagcgcgca gcaacgaagt ttttcgcttc
     8881 atttgccgac agaatggggc gcgaggcggt gccaggcgcg gtttgatcgg aagggatctg
     8941 atcgggtggc gtagagctac aggcgctcag cgtcacgcca aaagccagtg ccagcgccag
     9001 acgggaaacc gataatgtat tcacaggttg ctccgggctt gaaaaagtta aatgacatcc
     9061 attgaagcct gcttttttat actaagttga acgaaacggg aaggcgaaaa ggtaaaaagt
     9121 tccttttcag gctggaaaca cctgtagcat cagatagttt tatcacaatt aagcaacaac
     9181 tttcgcgctt tgagttgaca atccggagca gaaagaaaat aaatgtctat acaactcatg
     9241 acaggcaaga gagcgacagg aatgcggcaa cttttaccgg gcgatactgt ctggcgaaac
     9301 atcaggctgg cgacaatgga cccgcagcgg caagccccgt acgggctggt ggatagccag
     9361 gcgctgattg tacgcgaagg gcatatttgc gatatcgtgc cagagacgca gcttcctgtc
     9421 agtggggaca atatccatga tatgcaggga cgactggtaa ccccgggact tatcgattgc
     9481 cacacgcatc tggtgtttgc cggtaaccgc gccgcagagt gggagcagcg gcttaacggc
     9541 gcgtcatacc agcatattag cgctcagggc ggcggcatta acgcgacggt atcagcaacc
     9601 cgcgcctgtg cggaggagac gctctacctg ctggcgcgcg aacgcatgat gcgccttgcc
     9661 agcgaaggcg ttacgctgct ggagattaaa tccggctatg gtctggagct ggcgacagaa
     9721 gaaaagctgt tgcgcgtcgc tgcaaaactt gctgccgaaa acgctatcga cattagcccc
     9781 acgctattgg ccgctcatgc tacgccagcg gagtatcgtg acgacccgga cggctacatc
     9841 actctggtct gcgagacgat gattccgcag ctctggcaaa aagggttatt tgatgcggta
     9901 gacctctttt gcgagagcgt cggctttaat gtggcccaga gtgagcgcgt gttgcagacg
     9961 gcgaaggcgt taggtattcc cgttaaaggc catgttgagc agctttcgct gttgggcggc
    10021 gcgcagctgg tgagtcgtta tcagggttta tcggcggatc atatcgaata tcttgatgaa
    10081 gcgggcgtcg cggcgatgcg tgacggcggt actgtcggcg tgttgttgcc cggcgcgttt
    10141 tattttctgc gcgagacgca gcgcccgccg gttgaactgc tgcgccgcta tcaggtgcct
    10201 gtcgccgtcg ccagcgattt caatcccggc accagcccgt tttgcagttt gcatctggcg
    10261 atgaatatgg cctgcgtaca gtttggtctg acgccggaag aggcatggtc gggcgttacg
    10321 cgccatgccg ctcgcgcgct gggaagacag gcgacgcatg ggcagatcag ggccggctac
    10381 cgggcggatt ttgtggtgtg ggatgctgaa cagccggtag agattgtgta tgagccgggg
    10441 cgtaaccctt tatatcagcg ggtatacaga ggacaaatct catgacgcaa tggtatccgg
    10501 cttctccggc gctctggcag gggcgcgatg acagtataga agcgccggat gcgcggcgtc
    10561 tgtttcagac cgtcacgcgc agcgaggcct ttttccccga aaactggcag caaaagatcg
    10621 cgttaatggg atttgcctgc gacgaggggg taaaacgcaa ttcaggccgt cccggcgcgg
    10681 caggcggccc ggacgcgttg cgtaaagcgc tggcgaatat ggccagccat cagggacatg
    10741 aacggctggt ggatttaggc aattgggttg cgccgacgcc cgatctggaa ggcgcgcagc
    10801 aggccttgcg cgatgcggta agccgctgtc tgcgggccgg gatgcgcacg ctggtaatgg
    10861 gcggcgggca tgaaaccgcg tttggacacg gcgcgggggt gctggacgcg tttgcgcagg
    10921 aaagcgtagg gatcattaat cttgatgcgc atctggatct ccgtcagacc gaccgggcaa
    10981 catccgggac gccgtttcgt caactggcgc agctatgcga cgcgcagagc cgcgcgtttc
    11041 attatgcttg tttcggcgtg agccgtgcgg cgaatacgca ggcgttgtgg cgggaagcgc
    11101 agtggcggaa tgttaccgtg gtggaggatc tggactgcca tgacgcgctg gcgcagatga
    11161 cgcagtttat tgacaaggtg gataaaattt atctgactat cgatctcgac gtattgcctg
    11221 tctgggaaat gccggccgtc tccgctcccg cagcgctggg cgtgccgctg atacaggttc
    11281 tgcgtttaat tgagccggtt tgccgcagcg gaaaattaca ggcggcggat ctggttgaat
    11341 ttaatccacg ctttgatgaa gatggcgcag cggcgcgcgt ggcggcgcgg cttggctggc
    11401 aaatcgcgca ctggtggcgt taatctgtca tccggaaaac attatccgca taaggaaggc
    11461 ttcacgcatg tattcatccc gctcccgttc tgcgcctgcg cctttttacg aaacggtgaa
    11521 acaggacatc tgtaaaaaaa tagccggcgg cgtctggcag ccgcacgatc gcattccgtc
    11581 ggaagctgaa ctggtcgctc agtatggctt tagccgaatg accatcaacc gggcgctgcg
    11641 tgagctgacg gatgaagggt ggctggtgcg tttacagggc gtggggacgt ttgtcgccga
    11701 accgaaaggc cagtccgcac tgtttgaagt ccgcagtatc gccgaggaga ttgccgcccg
    11761 ccatcatcag catcgttgtg aggtgctcac gctggagcgt gtgcgggcaa acgccatcca
    11821 ggccagcgct ctcaacgtca atgagagtga tgtcattttc cattccatca tggtgcatta
    11881 tgaaaacgat ctgccggtac aaattgaaga tcgctgcgtg aatgcggata ttgccgtgga
    11941 ttacctgacg caggattacc gtcagaccac gccgcacgct tatttgtcgc ggatcgcgcc
    12001 gctaacggaa ggggaacata ttgtggaggc ggtgcgcgcc acggcgcaag agtgcgcgtg
    12061 gttaactatc aaagagcatg agccttgtct gctcattcgt cgtacaacct ggtccgcgtc
    12121 gcggattgtt tctcacgccc gcttactttt ccccgggtcg cgctaccggc tacagggacg
    12181 atttatctcc tgagcggctg ctgccggaaa acgtgattgc tgacacaata taacaaaatt
    12241 gtatcatttt tgttaattct attcttgtgc ttacttgtat agataagtat atgtctgatt
    12301 cttatctgtg ggtctgcggc ggtgcctgat agtggcgttt tagcgttatt tggcgatggc
    12361 agaccgataa taatgaggag tcattgctat gcctgaaagc aagtatcgtc agcagactat
    12421 ccgcgcgccc cgaggcacgg tattaacggc gaaaagctgg ctgacagaag ccccgctgcg
    12481 gatgttaatg aataatctcg atcctgacgt ggcggaaaat ccgcatgagc tggtggtcta
    12541 cggcgggatt ggtcgcgccg cgcgcaactg ggaatgctat gacgctattg ttgatgcgct
    12601 cacccggctg gaggcggacg aaacgttgct gattcagtct ggcaaaccgg tcggcgtatt
    12661 taaaacgcac gacaacgcgc cgcgggtatt aatcgccaac tccaacctgg ttccccactg
    12721 ggcgacatgg gaacacttta acgaactgga tgcgaaaggg ctggcgatgt acggtcaaat
    12781 gacggccgga agctggatct atatcggtag tcagggaatc gtgcagggaa catacgaaac
    12841 ctttgtcgag gcggggcgtc agcactataa cggcacgctg gcgggacgct gggcgctgac
    12901 cgccgggctg ggcggcatgg gcggcgcgca accgctagcc gcgacgctgg ccggagcgtg
    12961 ttcgctgacg attgaatgcc agcaaagccg tatcgatttt cgtctgcgta ctcgctacgt
    13021 ggatgagcag gccgccacgc tggatgacgc gctggcccgc attacgcgct acacccgcga
    13081 ggggaaagcc gtgtccgtcg ccctgtgcgc gaacgcggcg gatatcctgc cggaactggt
    13141 taatcgcggc gtgcgcccgg acctggtgac cgatcagacc agcgcccacg atccgctaca
    13201 tggctatttg ccctccggct ggtgctggga ggagtatcag aaaaacgcgc aatccgatcc
    13261 ccgggggacg atgcaggcag cgaaacgttc catggcggcg catgttcggg cgatgctggc
    13321 gttcagtaaa atgggcgtgc cgacctttga ctatggcaac aatattcgcc agatggcgaa
    13381 agagatgggg gtggaaaacg cctttgattt tccgggattt gtgccagcct atattcgtcc
    13441 gctgttctgt cgtggcatcg ggccgtttcg ctgggtggcg ctgtccggcg atccgcagga
    13501 tatctataaa accgatgcca aagtcaaaga gatagtggct gaggataaac atctgcatca
    13561 ctggctggat atggcgcgtg agcgcattca ttttcagggg ctaccggcgc gtatctgctg
    13621 ggtaggcttg gagtggcggc aaaaactggg gctggcgttc aacgaaatgg tgcgttgcgg
    13681 cgaggtatcc gcgcccattg tgattggccg cgatcacctg gattccggtt ctgtcgccag
    13741 ccctaaccgt gaaaccgaag cgatgcgcga cggttccgac gcggtttccg actggccgct
    13801 gttaaatgcg ttgctgaata ccgccagcgg ggcgacatgg gtatcgctcc atcatggcgg
    13861 cggggtgggg atgggttttt cgcaacacgc cggtatggtg attgtctgtg atggcactga
    13921 cgaggccgcc gcgcgtattc gccgcgtgtt acacaacgat ccggcgacgg gcgtcatgcg
    13981 tcatgccgat gccggatatg atctcgcggt ggaatgcgct gttgagcaag gtctgaattt
    14041 accgatggtt gcggcgacgc aggggaaagg ctgatatgaa caccatgaca ctcactccgg
    14101 ggcagttaag cctctctcaa ctgtacgatg tctggcgtca tccggtacag cttcggctgg
    14161 acgccagcgc cattgacggc attaacgcca gtgttgcgtg cgtcaatgat attgttgccg
    14221 aagggcgtac cgcctacggc atcaacaccg gtttcggcct gctggcgcag acgcgcatcg
    14281 ctgatgaaga cttgcaaaat ctacagcgat cgttggtgct gtctcacgcc gcgggcgtag
    14341 gcgacccact ggatgacgcg atggtgcgtc tgatcatggt attgaaaatc aatagcctgg
    14401 cgcgcgggtt ttccgggatt cggttgagcg tgatagaggc gctcatcgct ctggtgaatg
    14461 ccggcgtgta tccgctgatt ccggcaaaag ggtcggttgg cgcgtcgggc gacttagcgc
    14521 ctctggcgca tctgtcgctg acgctacttg gcgaaggaaa agcgcgctgg cagggcgaat
    14581 ggcttccggc gcaggcggcg ctaaaaaagg ccggactgga acctgtcgcg ctggcggcca
    14641 aagaggggct ggcgctgctt aacggcaccc aggcgtcgac ggccttcgcg ctgcgcggtt
    14701 tgtttgaggc acaggaatta tttgcctccg ccgtcgtctg cggcgcgctg actaccgaag
    14761 ccgtactggg atcgtgccgt ccttttgatg cgcgcattca tgccgcgcgc ggacaacagg
    14821 ggcaaattga cgtcgcgcgg ttgttccggc atctgctgac cgataccagc gccattgctg
    14881 aatcacatca ccactgtcat aaagttcagg acccgtattc cctccgctgc cagccgcagg
    14941 taatgggcgc ttgtctgacc cagttacgtc agacgaaaga ggtactgctg gctgaggcca
    15001 atgcggtgtc cgataatccg ctggtctttg ccgaggcggg ggaggtgatc tccggcggta
    15061 acttccatgc tgaaccggtt gccatggcgg cggatgatct ggcgctggcg atagcggaaa
    15121 tcggcgcgct atcggagcgg cgcatcacgc tgatgatgga taaacatatg tcgcagttac
    15181 cgccgttcct ggtgaaaaat ggcggcgtta attccggttt tatgattgcc caggtcaccg
    15241 ccgcggcgct tgccagcgag aataaagcgc tggcgcaccc gcacagcgtg gatagcctgc
    15301 cgacctcggc gaatcaggaa gatcatgtct caatggcccc ggcggcggga cggcgactct
    15361 gggaaatggc ggcgaatacc cgcggcgtca ttgccgtgga gtggctggct gcctgtcagg
    15421 ggatagattt acgggaaggg ttaacctcca gcccgttact ggaacaggcg cggcagacac
    15481 tgcgcgagcg ggtggcgcac tatacgcagg atcgtttttt cgcgcccgat attgagtgtg
    15541 cgacgacgct gctggcgcaa ggcgcgttac agcgtctggt gccggacttt atgtgaatgt
    15601 tgccggatgg cgcggcacgt attcggctta cccaacccgt tggaagggta agacgtttat
    15661 gccgccatcc gacacagcgt ttaactgaac atcgccgtta tcgaggcgct ggcgagcgaa
    15721 tggaaatgca cgttaaagcc gaccatcgcg ccgctggcgt cttcatcaac gtcaagacgc
    15781 tcgacgtcca gcgcgtgaac cgtaaagata tagcggtgcg tttccccttt aggcggcgcc
    15841 gcgccgccgt agcccgcttt accgaaatcg gtacgcgtct gaatgacgcc gtctggtacg
    15901 gccaccaggc ctgagccgaa cccctgggtc agtacgcgcg tatccgccgg gaggttcacc
    15961 accacccagt gccaccagcc ggagccggtc ggcgcgtcag gatcgtaaca ggtcacgaca
    16021 aaacttttgg tgcccatcgg cacgtcgtcc caggccagat gcggcgaaat attatcgcca
    16081 tcatagccca taccgttaaa aacgtggcga tgaggaagtt tatctccatc gcgcaaatcg
    16141 ttgctgataa gtttcatgcg ctctcctttt gactcaccag aagtgtagcc agaagcagca
    16201 tcgcttaccg ctgattaatg gctaaaaaat gtttcattgt gtaccgcgtc attgaccgcc
    16261 tgggtcaaac ggcgcagttg atccggacga ataatgtagg gcggcatcag gtagattagc
    16321 ttgccgaacg gcctgatcca gacgccttgc ccgacgaaga agcgttgaag cgccgccata
    16381 ttgaccggat gcgtagtttc aaccacccca atcgcgccca acacccgcac atccgccacc
    16441 cagggcgaac tttgcgcggg ggctaactca gcgcgtaact gagactcgat agacgccacc
    16501 tgctgacgcc attcgccgct ttccagcagc gtcaggctgg cgcaagcgac ggcgcaggcc
    16561 agcggattcc ccataaacgt cgggccatgc ataaaacacc ccgcctcgcc gttgctaata
    16621 gtctctgcaa cctggcgtgt cgtgagcgtt gccgagaggg tcatggtacc gccggttaag
    16681 gctttgccga gacacagaat atccggcgcg atcccggcgt gctcacaggc gaacagtttg
    16741 ccggtacggc caaacccggt ggctatttca tcggcaatca gcagaatgcc ttcgcgatcg
    16801 cacatgttac gaatacgcct gagccattgt ggatgatata tgcgcatccc gcccgcgccc
    16861 tgaacgatag gttccagaat cacggcggct atttcatggc gatgcgcggc catcaggcgg
    16921 gcaaatggcg cgatgtcgct ttcatcccat tcgccatcca tccggctttg cggcgccggc
    16981 gcgaacagat tttcaggcag atagcctttc cacaagctgt gcatggagtt atccggatcg
    17041 cacaccgaca tcgcgccgaa cgtgtcgcca tgataaccgt ggcgaaacgt cagaaaacgc
    17101 tgacgcgatt cgccacgagc ctgccagtat tgcagcgcca tcttcatggc cacttctacc
    17161 gacaccgaac cagagtcggc cagaaagaca cactccagcg gctcaggcgt tatcgcgacc
    17221 agcttacggc acagattcac cgcaggttga tgggttatgc cgccgaacat gacatgcgac
    17281 atggcgtcaa tttgcgcttt catcgccgcg ttcaattgcg ggtggttata accatgaatg
    17341 gccgcccacc aggaggacat cccctcaatc aggcgttcgc ccgaggcgag aaccagctcg
    17401 cagccttcgg cccgctcaac gggatatacc ggcagcggcg aggtcatgga agtgtaagga
    17461 tgccaaatat ggcgtttatc gaaggccaga tcgtccgttg tcataatcga cttgtaaacc
    17521 aaattaaaaa gatttaggtt tacgagtcta caccatatca aaaacaaaca acatattttg
    17581 gagaggcccg atggctcgcc acccacgctg gacactgtcg caagtaaccg aattatttga
    17641 aaaaccactg ctggaattgc tgtttgaagc gcagcaaatt catcgccagc atttcgatcc
    17701 gcagcaggta caggttagta cgctgttgtc gatcaaaacc ggcgcctgcc cggaggattg
    17761 taaatactgc ccgcagagct cgcgctataa aaccgggctg gaagccgagc gtttaatgga
    17821 ggtagagcag gtactggact ccgcccgtaa agcgaaaaac gccggttcga cccgcttctg
    17881 tatgggggcg gcctggaaga atccgcatga acgcgatatg ccttatctgg agaagattgt
    17941 acagggcgtc aaagcgatgg ggctggaaac ctgtatgacg ctcggcatgt tgaacgagag
    18001 ccaggcgcag cgtctggcta acgccgggct ggattactac aaccacaacc tcgatacctc
    18061 gccggagttt tacggcaata tcatcactac ccgtacctat caggagcgcc tcgacacgct
    18121 ggaaaaagtc cgtgaagcag ggattaaagt gtgctccggc ggcattgtgg gtctgggcga
    18181 aacggttacc gatcgcgccg gactgttgtt gcagttggcg aacctgccta cgccgccgga
    18241 aagcgtgcca atcaacatgc tggtgaaggt aaaaggcacg ccgcttgcgg ataacgatga
    18301 cgtggatgcg tttgatttta ttcgtactat cgccgtagcg cgcatcatga tgccgacctc
    18361 atacgtgcgt ctttccgcag gacgtgaaca gatgaacgag cagacccagg cgatgtgctt
    18421 tatggccggg gcgaactcga ttttctatgg ctgcaaattg ttaactacgc caaatccggc
    18481 agaggacaag gatctgcagt tattccgtaa gctggggctg aatccgcagc agaccagggt
    18541 gctggcgggc gataacgagc agcagcaacg tctggagcag acgctgatga cgcctgacac
    18601 cgatgattat tacaacgcgg cagccttatg agttggcaac aacgcgtcga cgatgcgctg
    18661 acggcgcgtc gggcgacgga tacgttgcgc cgccgctatg tggtatcgca gggcgccgga
    18721 cgctggctgg tagcgaacgg gcgacagtat cttaactttt ccagcaatga ttacctcggc
    18781 ttaagtcaac atccgcagat tattcgcgcc tggcaacagg cagcgacgcg ttt
//
LOCUS       DAJVSD010000064        18660 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.064, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000064 DAJVSD010000000
VERSION     DAJVSD010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 18660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18660
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.064"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            124..828
                     /locus_tag="OQP62_001857"
     CDS             124..828
                     /locus_tag="OQP62_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HCS1721429.1"
                     /translation="MPLSAQQLAAQKNLSYVLAEKLAQRILKGDYAPGTILPGEIELG
                     EQYGVSRTAVREAVKTLTAKGMVLPRPRIGTRVMPQGNWNFLDQELLTWWMTEENFHQ
                     VVDHFLVMRISLEPQACLLAATLGTPEQKARLNALMEEMVALKKHFKRERWIEVDMAW
                     HEHIYEMSANPFLISFATLFHSVYHTYFTSITYNEVVKLDLHQAIVDAIADGDGERAF
                     QACQALLIAPNERPDN"
     gene            840..2267
                     /gene="mdtD"
                     /locus_tag="OQP62_001858"
                     /pseudo
     CDS             840..2267
                     /gene="mdtD"
                     /locus_tag="OQP62_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462786.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter subunit MdtD"
     gene            complement(2233..3231)
                     /gene="rbsR"
                     /locus_tag="OQP62_001859"
     CDS             complement(2233..3231)
                     /gene="rbsR"
                     /locus_tag="OQP62_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose operon transcriptional repressor RbsR"
                     /protein_id="HCS1721430.1"
                     /translation="MATMKDVARLAGVSTSTVSHVINKDRFVSETITEKVEAAIKSLN
                     YAPSALARSLKLNQTRTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQ
                     RMNRNLETLMQKRVDGLLLLCTETHQPSREIMERYPSIPTVMMDWSPFDGEGDSDLIQ
                     DNSLLGGDLATQHLIDKGFTRIACITGPLDKTPARLRLEGYRAAMKRAGLAIPQGYEI
                     TGDFEFGGGFDAMQALLAHQQRPQAVFTGNDAMAVGAYQALYQAGLRIPQDMAVIGYD
                     DIELARYMTPPLTTIHQPKDELGELAIDVLIHRMAQPALQQQRLQLTPVLTVRGSV"
     gene            complement(3235..4164)
                     /gene="rbsK"
                     /locus_tag="OQP62_001860"
     CDS             complement(3235..4164)
                     /gene="rbsK"
                     /locus_tag="OQP62_001860"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HCS1721431.1"
                     /translation="MKTAGNLIVLGSINADHILNLESFPTPGETVTGSHYQVAFGGKG
                     ANQAVAAGRSGANIAFIACTGDDDIGDSIRKQLVSDRIDIAPVSVIKGESTGVALIFV
                     NGEGENVIGIHAGANAALSPALVDAQRERIAQADALLMQLESPLESVLAAAKIAHQHH
                     TTVALNPAPARELPDELLALVDIITPNETEAEKLTGVRVENDDDVAKAAQVLHDKGIR
                     TVLITLGSRGVWASVNGEGRRVPGFSVEAVDTIAAGDTFNGAFITAILEETPLPEAIR
                     FAHAAAAIAVTRKGAQPSVPWREEIEAFLHQQG"
     gene            complement(4297..5187)
                     /gene="rbsB"
                     /locus_tag="OQP62_001861"
     CDS             complement(4297..5187)
                     /gene="rbsB"
                     /locus_tag="OQP62_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter substrate-binding protein
                     RbsB"
                     /protein_id="HCS1721432.1"
                     /translation="MNMKKLATLVSAVALSATVSANAMAKDTIALVISTLNNPFFVSL
                     KDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKM
                     ANQAKIPVITLDRQATKGDVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGT
                     SAARERGEGFQQAVAAHKFNVLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEM
                     ALGALRALQTAGKADVMVVGFDGTPDGEKAVKDGKLAATIAQLPDQIGAKGVEVADKV
                     LKGEKVQAKYPVDLKLVIKQ"
     gene            complement(5212..6177)
                     /gene="rbsC"
                     /locus_tag="OQP62_001862"
     CDS             complement(5212..6177)
                     /gene="rbsC"
                     /locus_tag="OQP62_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter permease"
                     /protein_id="HCS1721433.1"
                     /translation="MTTQAVSGRRYFTKAWLLEQKSLIALLVLIAIVSTLSPNFFTVN
                     NLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGVEVNALVAVA
                     AALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTDGSPVNTGFTDNADL
                     FGWFGIGRPLGVPTPVWIMAIVFIAAWYMLHHTRLGRYIYALGGNEAATRLSGISVSK
                     VKIIVYSLCGLTASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIV
                     GTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ"
     gene            complement(6183..7688)
                     /gene="rbsA"
                     /locus_tag="OQP62_001863"
     CDS             complement(6183..7688)
                     /gene="rbsA"
                     /locus_tag="OQP62_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter ATP-binding protein RbsA"
                     /protein_id="HCS1721434.1"
                     /translation="MDALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKS
                     TMMKVLTGIYTRDAGSLLWLGKETTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFL
                     GREFVNRFGKIDWKKMYAEADHLLAKLNLRFKSDKLVGELSIGDQQMVEIAKVLSFES
                     KVIIMDEPTDALTDTETDSLFRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQ
                     FIAEREVATLTEDSLIEMMVGRKLEDQYPHLDNAPGEIRLKVDNLCGPGVNDVSFVLR
                     KGEILGISGLMGTGRTELMKVLYGAMPRTSGYVTLEGHEVVTRSPQDGLANGIVYISE
                     DRKRDGLVLGMSVKENMSLTALDYFSRAGGSLKHKDEQQAVGDFIRLFNVKTPSMEQA
                     IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKADGLSIIL
                     VSSEMPEVLGMSDRIIVMHEGHLSGEFTREQATQEVLMAAAVGKLNRVNQE"
     gene            complement(7696..8115)
                     /gene="rbsD"
                     /locus_tag="OQP62_001864"
     CDS             complement(7696..8115)
                     /gene="rbsD"
                     /locus_tag="OQP62_001864"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HCS1721435.1"
                     /translation="MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMAL
                     TQGVPSFMQVVDVVTWEMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKIS
                     YTTHEQFKKLTADSQAVIRSGECSPYANVIICAGVTF"
     gene            complement(8332..10200)
                     /gene="kup"
                     /locus_tag="OQP62_001865"
     CDS             complement(8332..10200)
                     /gene="kup"
                     /locus_tag="OQP62_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity potassium transporter Kup"
                     /protein_id="HCS1721436.1"
                     /translation="MSTDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGV
                     ERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNTSARTTSML
                     VIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKH
                     GTGMVGKLFAPIMLTWFLILAVLGLRSIIANPEVLHALNPVWAVRFFLEYKTVSFIAL
                     GAVVLSITGVEALYADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKHPEAIKNP
                     FFLLAPDWALIPLLILAALATVIASQAVISGVFSLTRQAVRLGYLSPMRIIHTSEMES
                     GQIYIPFVNWLLYFAVVVVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARKNWHW
                     NKYFVALILIAFLCVDIPLFSANLDKLLSGGWLPLSLGLIMFTIMTTWKSERFRLLRR
                     MHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRALSVIPFALLHNLKHNKVLHERVILL
                     TLRTEDAPYVHNVRRVQIEQLSPTFWRVVASYGWRETLNVEEVFHRCGLEGLSCRMME
                     TSFFMSHESLIVGKRPWYLRLRGKLYLLLQRNALRAPDQFEIPPNRVIELGTQVEI"
     gene            10548..12044
                     /gene="ravA"
                     /locus_tag="OQP62_001866"
     CDS             10548..12044
                     /gene="ravA"
                     /locus_tag="OQP62_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase RavA"
                     /protein_id="HCS1721437.1"
                     /translation="MAHPHLLAERISRLSSALEKGLYERSHAIRLCLLAALSGESVFL
                     LGPPGIAKSLIARRLKFAFQRARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTT
                     GYLPEAEIVFLDEIWKAGPAILNTLLTAINERHFRNGAFEEKIPMRLLVAASNELPEA
                     DSSLEALYDRMLIRLWLDKVQDKANFRSMLVSQQDESDNPVPASLQVSDEEYQQWQKD
                     IGAISLPDPVFELIFTLRQQLDNLPNAPYVSDRRWKKAIRLLQASAFFSGRDAVAPID
                     LILLKDCLWYDAQSLNLMQQQLEILMTGHAWQQQAMLTRLGGIVQRRLQLQQQQSDKT
                     AFTVIKEGGMFSRRPHYTLPPEASASTLTLLLQKPLKLHDMEVIHITFDRSALELWLT
                     KGGEIRGKLNGIGFAQTLNMEVDNAQHPVVRDISLQGTRLALPGAAEDSMPAEIKQQL
                     ETLENDWRQQHTRFSEQQHCLFIHSDWLGRIEASLQDVGEQIRQAQQC"
     gene            12038..13489
                     /gene="viaA"
                     /locus_tag="OQP62_001867"
     CDS             12038..13489
                     /gene="viaA"
                     /locus_tag="OQP62_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase RavA stimulator ViaA"
                     /protein_id="HCS1721438.1"
                     /translation="MLTLDTLNTMLAVSEEGMVEEMILALLASPQLVIFFEKFPRLKN
                     AVTADLPRWREALRSRLKDARVPPELTEEVMCYQQSQLLSTPQFIVQLPQILALLHRL
                     HSPYAAQAKQLTESNSTFTPALHTLFLQRWRLSLVVQATTLNQQLLEEEREQLLSDVQ
                     ERMTLSGQLEPTLAENDNAAGRLWDMSAGQLKRGDYQLIVKYGEFLAAQPELMQLAEQ
                     LGRSREAKSVPKKDAPMETFRTLVREPATVPEQVDGIQQGDDILRLLPPELATLGITE
                     LEYEFYRRLVEKQLLTYRLHGEAWREKVTERPVVHQDVDEQPRGPFIVCVDTSGSMGG
                     FNEQCAKAFCLALMRVALADNRRCFIMLFSTDVVRYELSGPESIEQAIRFLSQRFRGG
                     TDIASCFRAIIERMQGREWFDADAVVISDFIAQRLPDDVVSKVGELQRLHQHRFHAVA
                     MSAHGKPGIMRIFDHIWRFDTGMRSRLLRRWRR"
     gene            complement(13494..14486)
                     /gene="asnA"
                     /locus_tag="OQP62_001868"
     CDS             complement(13494..14486)
                     /gene="asnA"
                     /locus_tag="OQP62_001868"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HCS1721439.1"
                     /translation="MKTAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGT
                     QDNLSGCEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPD
                     EDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAEVHKQFGLAPF
                     LPDQIHFVHSQELLARFPDLDAKGRERAIAKELGAVFLVGIGGKLSDGRRHDVRAPDY
                     DDWSSASELGYAGLNGDILVWNPVLEDAFELSSMGIRVDADTLMRQLALTGDEDRLQL
                     EWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQCGVWPAQVRESIPAIL"
     gene            14637..15095
                     /gene="asnC"
                     /locus_tag="OQP62_001869"
     CDS             14637..15095
                     /gene="asnC"
                     /locus_tag="OQP62_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator AsnC"
                     /protein_id="HCS1721440.1"
                     /translation="MENYQIDNLDRGILDALMENARTAYAELAKQFGVSPGTIHVRVE
                     KMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALARLESLDEVTEAYYTT
                     GHYSIFIKVMCKSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTIKP"
     gene            15185..15628
                     /gene="mioC"
                     /locus_tag="OQP62_001870"
     CDS             15185..15628
                     /gene="mioC"
                     /locus_tag="OQP62_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="HCS1721441.1"
                     /translation="MADITLISGSTLGGAEYVAEHLAEKLEAAGFSTETVHGPLLEDL
                     STSGIWLIISSTHGAGDIPDNLTPFYEDLQTQKPDLSAVRFGAIGIGSREYDTFCGAI
                     EKIEAELKGAGAKQVGETLKINILEHEIPEDPAEIWLGSWINLLK"
     gene            16007..17896
                     /gene="mnmG"
                     /locus_tag="OQP62_001871"
     CDS             16007..17896
                     /gene="mnmG"
                     /locus_tag="OQP62_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000499793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HCS1721442.1"
                     /translation="MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQ
                     MSCNPTIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFKILNASKGPAVRATRAQADRV
                     LYRQAVRIALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD
                     GKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQ
                     HGDNPMPVFSFMGNAFQHPQQVPCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRY
                     CPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENA
                     KIVRPGYAIEYDFFDPRDLKPTLESKFIHGLFFAGQINGTTGYEEAAAQGLLAGLNAA
                     RLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTE
                     MGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAESADEVNAHLTTPLSREAS
                     GEDLLRRPEMTYAQLTSLAAFAPALEDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNE
                     NTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGM
                     LRRSA"
     gene            17999..18622
                     /gene="rsmG"
                     /locus_tag="OQP62_001872"
     CDS             17999..18622
                     /gene="rsmG"
                     /locus_tag="OQP62_001872"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462772.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HCS1721443.1"
                     /translation="MLNKLSRLLADAGISLTDHQKTLLVAYVDMLHKWNKAYNLTSVR
                     DPNEMLVRHILDSIVVAPYLQGQRFIDVGTGPGLPGIPLAIVLPDAHFTLLDSLGKRV
                     RFLRQVQHELKLENITPVQSRVEAYPSEPPFDGVISRAFASLNDMVSWCHHLPGEKGR
                     FYALKGQLPGDEIASLPDNFSVESVEKLRVPQLEGERHLVIIKSNKV"
BASE COUNT         4494 a         5100 c         4784 g         4282 t
ORIGIN      
        1 ctcttttttc atcaacagcg ggcttaacgt gccataaaat aagcaaattg ccgttattgc
       61 aactgcaatc acacttccag gtggcatact aataaccaaa cgaaagagaa aggaagaaca
      121 ttcatgcctt taagcgcaca acaattagcc gcacagaaaa atctatccta tgttctggct
      181 gaaaagctgg cgcagcggat attaaagggt gactacgccc ccggtacgat tcttcccggc
      241 gaaatagaac tgggcgagca gtacggcgta agtcgaacgg cagttcgcga agcggtgaaa
      301 acgttgacgg ctaaaggtat ggtgctaccc cgtccgcgca ttggtacgcg ggtgatgccg
      361 cagggaaact ggaactttct ggatcaagag ctgctgacct ggtggatgac ggaagaaaat
      421 tttcatcagg tggtagatca ttttctggtg atgcgtatta gcctggagcc gcaagcttgc
      481 ctgctggcgg cgactcttgg cacaccggag cagaaagcgc ggcttaatgc cttaatggaa
      541 gagatggtcg cgctgaaaaa gcattttaag cgtgaacgct ggattgaagt ggatatggcg
      601 tggcacgagc atatctacga aatgagcgcc aatccctttc taatctcttt tgctacgcta
      661 tttcattcgg tttatcacac ttactttacc tcaatcacct ataacgaggt ggtaaagctg
      721 gatttgcacc aggccattgt tgatgccatc gctgatggcg acggcgaacg cgctttccag
      781 gcctgtcagg cgttgttaat agcgcccaat gagagaccag ataattaaca ggatattgaa
      841 tgaccagcaa aaaagcgcgc agtatggctg gcctgccgtg gatcgcggcg atggccttct
      901 ttatgcaggc gctagacgcc accattttga ataccgcttt accggctatt gcgcatagtc
      961 ttaactgttc accactcgcc atgcagtccg ctattatcag ttataccctg acagtagcca
     1021 tgttaattcc ggtaagcggc tggctggctg accgcttcgg tacgcgtcgc gtctttatgg
     1081 ttgccgtaag tctgtttacg ttaggctcgc tggcctgcgc gctctccagt tcactatctg
     1141 aattggttat ttttcgcgtc gtacaaggcg tcggcggagc gatgatgatg ccagtggcgc
     1201 gactggcgtt attgcgagcc tatccgcgta gtgagctgct gcccgttctt aactttgtca
     1261 ctatgccggg gctggtaggt ccgattctgg ggccggtatt aggcggcgta ctggtgacct
     1321 aggcaagctg gcactggatc ttcctgatta atattcccat tggggttgca ggcattctgt
     1381 atgcccgcaa atatatgccc aacttcacca cgccgcgtcg caagtttgac atgaccggct
     1441 tctttctttt tgggttaagt ctggttttat tttccagcgg aatggaactg tttggcgaaa
     1501 agattgtggc gacatggatc gcatccgcca ttattttttg cagtatcgtt ctactattgg
     1561 cctatatccg ccacgcccgc cgtcatccga caccgttaat atcactatcg ctgtttaaga
     1621 cacgcacatt ttccgttggc attgccggca acctcgccac gcgtctgggg acaggctgcg
     1681 tacctttttt gatgccgtta atgctacagg ttggttttgg ctacccggct ctgatcgccg
     1741 gctgcatgat ggcgccgacg gctttgggtt ctattatcgc gaaatcgacc gtaacgcagg
     1801 ttttacgacg tttgggatac aggaagacgc tggtcggcat tacggtattt atcggtctga
     1861 tgattgccca gttttcgttt caatctcccg ctatgccgat ctggatgctc gtactgccgc
     1921 tattcattct tggaatggcg atgtccactc aatttacggc aatgaatacg attactcttg
     1981 cggatctgac ggacgataac gccagcagcg gcaacagcgt tctggcagtt acgcagcaat
     2041 tgtctatcag tttaggcgtg gcgatcagcg cggcggtgtt acgtatttat gaaggttttg
     2101 cgggcaccag taccgtggaa cagttccact atacctttat cacgatgggg gcgatcacta
     2161 tcgtgtccgc gctgatgttt atgctgctaa gagccaaaga cggcaacaat ctgattaaag
     2221 aacggcataa atctaaaccg acccacgcac cgtcaaaacc ggagtaagct gaagtcgctg
     2281 ttgttgcaag gcgggctgcg ccatccgatg aatcaacaca tcaatagcaa gctcgcccaa
     2341 ttcatctttc ggctgatgga tagtcgtcag cggcggcgtc atatagcgcg ctagctcaat
     2401 atcatcatag ccaatgactg ccatatcttg cgggatacga agccccgcct gatatagcgc
     2461 ctgataggcg ccgacagcca tcgcatcgtt tccggtaaaa accgcttgcg gtcgctgttg
     2521 atgggcgagt aacgcctgca tggcgtcaaa gccgccgcca aattcaaaat cgccggtgat
     2581 ctcatagcct tgcggaatag ccagccctgc gcgtttcatc gccgcccgat acccttccag
     2641 ccgcaaacgc gcaggcgttt tgtccagcgg gccggtaata caggctattc gggtaaatcc
     2701 tttatcgata aggtgttggg tcgcaagatc gccgcctaac aacgaattat cctgaatgag
     2761 atcgctatcg ccctcaccat caaacggcga ccagtccatc atgacggtag gaatagacgg
     2821 ataacgttcc atgatttcac gagaaggctg atgcgtttca gtacacagca gcagtaaacc
     2881 gtctacccgt ttttgcatca gcgtctctag gttgcggttc atccgttgct catcgccttc
     2941 ggtattacac agcaccagac tataaccgcg ctcaaaacag cttcgctcaa cgccgcgcac
     3001 cagttcggaa taaaaagggt tggtactggc ggtaatcagc ataccaatcg tgcgggtctg
     3061 gtttaacttg aggcttcgcg ccagcgcgga aggcgcatag ttaagtgatt taatcgccgc
     3121 ttcaactttt tcagtaatcg tctcactcac aaagcgatct ttgttaataa cgtgagagac
     3181 cgtcgatgta gagactcccg ccaggcgggc aacatctttc atagtagcca agcgttaccc
     3241 ctgctgatgt aaaaacgctt ctatctcttc gcgccacgga acggaaggtt gcgcgccttt
     3301 acgcgttacg gcaatcgcgg cggcggcatg ggcaaagcga atcgcttccg gcaacggcgt
     3361 ctcctccagt atcgcggtga taaaggcgcc gttaaacgta tctccggcgg caatggtatc
     3421 gacagcctca acgctaaatc caggaacgcg gcgaccctcg ccgtttacgc tggcccagac
     3481 gccacggctt cctaaggtaa ttaatacggt tcgaatgcct ttatcatgta aaacctgcgc
     3541 agctttcgcg acatcgtcgt cattttccac acgcacgccc gtcagctttt cagcttccgt
     3601 ttcatttggc gtgatgatgt ccaccagcgc cagcagttca tccggtaact cacgggcagg
     3661 tgccgggtta agcgcaacag tagtatgatg ttgatgggcg attttcgccg ccgccagtac
     3721 gctttccagc ggcgattcca gctgcatcag taacgcatcc gcctgcgcga tacgttcacg
     3781 ttgcgcatca accaacgccg gcgataacgc ggcattcgct ccggcatgaa taccgatgac
     3841 gttctcgcct tcgccattaa cgaaaatcag cgctaccccg gtagactcgc ctttaatgac
     3901 gctaactggc gcgatatcaa tacgatcgct gactaattgt ttacgaatac tgtcgccaat
     3961 atcgtcatcg cccgtgcagg cgataaacgc aatatttgcc ccgctacgtc ccgcagcaac
     4021 cgcctgattc gcgcctttcc cgccaaacgc gacctgataa tggctaccgg ttaccgtttc
     4081 acccggggta gggaaggact caagattaag gatatgatcg gcattaatgc tgccaaggac
     4141 gatgagatta cctgcggttt tcatattcgg ggttccacgt caaagtgcgc caccggttag
     4201 ggtggcgcgt gccctgcttt tcttttttta cgttcacctc agcggaggct cgcgtatttc
     4261 tgtcgccatc aggccatagt tgacccgtgt cgtttattac tgcttgatga ccagtttcag
     4321 gtcaaccgga tatttggcct gaactttttc gcctttcagc accttatccg ctacttcaac
     4381 gcctttggcg ccgatttgat ccggtaactg agcgatagtc gctgccagtt tgccatcttt
     4441 tacggccttt tcgccatccg gcgtaccgtc aaatccaacc accatcacat ctgctttacc
     4501 ggcagtttgc agcgcgcgca gtgcgcccag cgccatttca tcgttctggg cgaagacagc
     4561 ctgaacatcc ggatgcgcgg tcagcaggtt ctgcatgacg ttcagacctt tagtacggtc
     4621 gaaatcggca ggctggctgg ccaggacatt aaatttgtgg gcggctaccg cctgctggaa
     4681 accttcgcca cgctcacgcg ccgcagatgt tccggcaatg ccttgcagct caatcacttt
     4741 ggcgccttcg ccagcttttt tcgcgatata gtcgccagcg atcttaccgc ccagcacgtt
     4801 atcagacgcg atatggctga cgacatcgcc tttggttgcc tggcggtcaa gcgtgataac
     4861 cggaatcttc gcctggttcg ccatcttcac cgcgttaccc accgcatcgg agtcagtcgg
     4921 gttgatcagc aaaattttgg tcccgcgaac ggttaaatcc tgcacgttcg ccagctcttt
     4981 ggcagggttg ttctgggagt ccagcaccac caggttataa cccagtttat ccgcctcttt
     5041 ttgcgccccg tcttttaacg acacgaagaa gggattattg agggtagaga tcaccagcgc
     5101 aatggtgtct ttcgccattg cattcgcgct cacggtggcg ctcagcgcaa cagcagatac
     5161 cagggtagcc agttttttca tgttcatatt tcagatgtcc tgtagtcgtt gttactgctt
     5221 tttgttgtct accagtaccg ccagcaaaat caccaccgct ttgacgatca tctggtaata
     5281 ggaggaaaca cctaacaaat tcaaaccatt attaaggaag ccgagaatca atgcgccgat
     5341 caatgtccca acaatgcgcc ctttaccacc tgcaaggctg gtgccgccca gcaccacggc
     5401 ggcaatagca tccagctcat agccggtacc cgccgtcggc tgcgcggaag agaggcgcgc
     5461 cacttcaatg atgcccgcca gcgatgctgt caggccgcaa agtgaataga cgataatttt
     5521 cactttgctc acgctaatgc cagacagacg cgtcgccgct tcgttaccgc ccagcgcgta
     5581 gatatagcgt cccagacggg tgtgatgcag catataccag gcggcgataa agacgatagc
     5641 catgatccag accggcgtag gaacgcccag cggacgaccg ataccgaacc agccaaacag
     5701 atcggcgtta tcggtaaagc cggtgttgac cgggctaccg tcggtgtaaa ccatcgtcac
     5761 gccacgcagt agcagcatca tcaccagcgt agcgataaac gcctgtacgc ggcccttcgc
     5821 gacgataacg ccagtgacgg cgccaatcgc agcgcccagc gccagcgcgg cggcaaccgc
     5881 gaccagcgca ttcacttcaa cgccgacgat tgaagcggca accgcaccgg tgagtgccag
     5941 cagggaaccg acggacagat cgatccccga tgtcagaatc accaacgtca tccccaccgc
     6001 cataatggcg ttgacggagg tctgttgaag aatattgaac agattattaa cggtaaaaaa
     6061 gttggggctc aacgtcgaaa caatcgcgat caacaccagc agggcaatga gcgacttctg
     6121 ctcaagaagc cacgctttag tgaaataacg gcgaccagaa acagcctggg ttgtcatctt
     6181 ttttactcct gattcacgcg attaagcttg cccactgcgg cagccattaa cacttcctgg
     6241 gtggcctgct cgcgagtaaa ttcaccgctg agatgccctt catgcatgac gatgatgcga
     6301 tcgctcatgc ctaatacttc tggcatctca gatgagacca gaatgatgct caggccgtcg
     6361 gccttaaact ggttgataag ctggtaaatc tctttcttgg cgccgacgtc cacgccgcgg
     6421 gtcggctcgt cgagaatgag cactttcggg cgcgtcatca acccgcgggc aatcgccact
     6481 ttttgctgat taccgccaga aagcaggcct atcgcctgtt ccattgacgg cgtcttgacg
     6541 ttgaacagac ggataaaatc ccccaccgcc tgctgctcat ctttgtgttt caggcttccg
     6601 ccagcgcgac tgaaataatc cagcgcagtc agcgacatat tctctttaac tgacatgccg
     6661 agcaccagtc catcgcgctt acggtcttca gagatataaa cgatgccatt ggccagcccg
     6721 tcctgcggag aacgcgtcac cacttcgtgt ccctcgagcg tcacgtaacc gctggttcgc
     6781 ggcatcgcgc cgtacaatac tttcatcagc tcagtgcgac cggtgcccat caggccggag
     6841 atgccaagaa tctcgccttt tcgcagcaca aaagagacat cgttcacgcc cggtccgcac
     6901 agattatcga ccttcaggcg aatctcaccc ggcgcgttat ccagatgcgg gtactgatct
     6961 tccagcttac gtcccaccat catttcgata agagaatctt cggtcaacgt ggccacttca
     7021 cgctcggcga taaattgccc atcgcggaag accgtcacgt catcgcaaat ttcgaaaatc
     7081 tctttcatac ggtgagagat atagacaatg ccgcgcccct gcgattttaa ttcgcggata
     7141 acgcggaaca gagagtcggt ttcagtgtcg gtcagcgcat cggtcggttc atccataatg
     7201 atgactttgg attcgaagct cagcactttg gcgatttcca ccatttgctg atcgccgata
     7261 gagagttcgc ccaccagctt atcgctctta aagcgcagat tgagtttggc taagaggtgg
     7321 tcggcttcgg catacatctt tttccagtcg attttaccaa agcgattcac aaactcacgg
     7381 cccaggaaga tgttttccgc aatggtcaac tgcggaatca ggttcagttc ctgatgaata
     7441 atgccgatcc cggcttcctg agacgattta ggcccattaa aggtggtctc tttacccagc
     7501 cataacaacg atcccgcatc tcgcgtatag atgccggtta atactttcat catggtggat
     7561 tttccggcgc cgttttcccc caccagcgcc ataacgcggc caggataaac gtttaacgcg
     7621 gcgccggaga gagccttcac gccggggaac gctttatcga tccctttgag ttgcagtaat
     7681 gcgtccatag cggcctcaga aagtgacgcc agcgcaaata atgacgttcg catacgggga
     7741 acactccccg ctgcgaatca ctgcctgact gtctgcagtc aattttttga attgttcgtg
     7801 tgtcgtataa ctaattttta tggtgtttcc ctggtgttgc tgcagttgct caaggtgagt
     7861 gagcaacgtt tcgtggagct gcggattctg ttgtttgatt tccgttgcaa gaatcgccgc
     7921 ctcaacctgc atttcccagg tcacgacatc caccacctgc ataaaagaag gtacgccctg
     7981 ggttagtgcc atatcgatac gcgcagtgct attcgggatg ggtaaacccg catcacagac
     8041 caccagagta tcagtatgcc ccagacggga aatgaccgac gagatttcag agttgagtac
     8101 ggtgcctttc ttcatttttc tgctccacta gcgaaacgtt tcgctggccg cagtgtaacc
     8161 ctggatgtgt tcataaaacc atcatgacgt aacagaattg tgatcgccgt cgaaacgttt
     8221 cgctagcgga aatcaggtga agataatcgc ccaatggcga ttatcttgtg ggaatctacg
     8281 gattggccag gccgggtaag ccaatgcggc ccccggcatg ttgatgagag gttaaatctc
     8341 gacctgcgta cctaactcaa tcacgcggtt aggcgggatc tcgaactgat ccggcgcgcg
     8401 cagggcgttg cgttgcaaca acaaatacag cttgccgcgc agacgcaaat accacgggcg
     8461 tttgccgaca atcaacgact cgtgcgacat aaagaacgac gtttccatca tccgacagct
     8521 aaggccttcc agaccgcagc ggtggaacac ctcttcaacg tttagcgttt cgcgccagcc
     8581 gtagctggcc accacgcgcc agaatgtcgg agacaactgc tcaatctgca cccggcgaac
     8641 gttatgcaca taaggcgcat cttccgtacg caacgtcagt aagattacgc gctcatgcaa
     8701 cactttgttg tgcttcaggt tatgcaataa agcaaaaggg atcacactga gcgcgcgcga
     8761 catgtatacg gcagtacccg gcacccgaac cggcggtgac ttctccagtg aagcaatcat
     8821 cgcttccagc gaattaccgt gttcatgcat acgacgcaac agacggaaac gctcgctctt
     8881 ccaggtggtc atgatcgtga acatgatcag acccaggctc agcggcagcc aaccgccgga
     8941 caacaatttg tcgaggttag ccgagaacag cgggatatcc acgcacagga atgcgatgag
     9001 gatcagcgcg acaaaatatt tgttccagtg ccagttctta cgcgccacgg tcgtagaaag
     9061 aatagacgtc agcaccatcg tgccggtcac ggcgatgcca taggccgccg ccaggttgct
     9121 ggagtgctca aagctaacaa taacaaccac gaccgcgaaa taaagcagcc agttaacgaa
     9181 agggatgtag atctgaccgg actccatctc ggaggtatgg ataatgcgca ttggcgacaa
     9241 atagccaaga cgcacggcct gacgcgtcag cgaaaagacg ccggaaatta ccgcctggga
     9301 ggcgatcacc gtcgccagcg cggccagaat cagcagcgga attaacgccc agtccggcgc
     9361 caacaggaag aaggggtttt taatcgcttc cggatgcttt agtagcaatg caccctgacc
     9421 aaagtagttc agtactaacg acggcaatac cacggtaaac cacgccaggc gaatcgggaa
     9481 cttaccgaag tgtcccatat cggcgtacaa cgcctctacg ccggtaatcg acagcaccac
     9541 cgcgcccaac gcaataaacg atacggtttt atattcaagg aaaaaacgta ccgcccagac
     9601 aggattcagc gcatgtaaca cttcgggatt ggcgataata ctgcgtaggc caagtaccgc
     9661 caggattaaa aaccaggtca gcatgatcgg cgcaaagagt tttcctacca ttcccgtacc
     9721 gtgcttctga atcataaaca acagagtcag cacaataatg gagagcggga caatccaggt
     9781 atccagctgc ggcgcgacaa tctccaggcc ttcaatcgcc gacatcaccg aaatcgccgg
     9841 cgtaatgacc acttcgccat agaaaaagct gccgcctatc agtcccatga taactaacat
     9901 ggatgtggtg cgcgccgagg tattacgccc ggcaagcgac atcagcgtca aaattccacc
     9961 ttcacccgcg ttatcggcgc gcatcacgaa ggtgagatat ttgatggaaa ccacaaagat
    10021 gagtagccag aagatcagcg acagaaaacc aaacacggca tctcgttcaa cgccaaaacc
    10081 aaactgaccg gacaaacatt cacgaagcgt ataaagcggg ctggtaccaa tatcaccgta
    10141 gacaacccca atagctgcga gggtaatcgc aggcaacgat tgcttattat cagtgctcat
    10201 agactcatct ttcgtttata cacgtcaccc ttcacgctac ctccttgtcg actgcattcg
    10261 cttaccccag tcacacgttt aagtcagtgc caggggattc actcctttgc cgccttgatg
    10321 tagtttgaat gaatgagtgt atagatatga aatgtgtgct tagtcccttg gcccacaaaa
    10381 aagcgcacag tatgcacgat taatcataaa atcgtacccc taaatgaagc cagattaacc
    10441 tggctcaaag aaaaataaac agcgcgtcag aagattacag ccccggtggt gaaacgtcta
    10501 tactcgcaat tagcatgatc catttgtcga aaggacgcct ctttattatg gctcacccac
    10561 atttattagc ggaaagaatt tcccgtctga gcagcgccct tgagaagggg ctgtatgaac
    10621 gtagtcacgc catacgcctg tgcctactgg cggcgttaag cggtgagagc gtctttttgt
    10681 tgggcccgcc cggtatcgcc aagagtctga ttgcccgccg cctgaagttt gctttccagc
    10741 gcgcccgcgc ttttgaatat ctgatgacac gcttttccac gccggaagag gtgtttggcc
    10801 cgctctctat tcaggcgctg aaagatgaag gtcgctatga acgcttaacg accggctacc
    10861 ttcccgaagc cgaaatcgtt tttctggatg aaatctggaa agccgggccc gctatcctga
    10921 acacattgct gaccgccatt aacgaacgcc atttccgcaa cggcgcgttt gaggaaaaaa
    10981 tcccgatgcg gctactggtg gcggcctcta acgaactgcc cgaagcggac agcagcctgg
    11041 aagccttgta cgaccgaatg ttgattcgcc tgtggctgga taaagttcag gataaagcca
    11101 atttccgctc catgctggtt agtcagcagg atgagagtga taacccggtc cccgcctcgt
    11161 tacaggttag cgacgaagaa tatcaacagt ggcaaaaaga tatcggcgcg atttcactgc
    11221 ctgatccggt ctttgagctg atatttactc tgcgccaaca gctggataat ttgccgaatg
    11281 cgccttatgt ctccgaccgt cgctggaaga aagccatccg cctgttacag gccagcgcct
    11341 tctttagcgg acgcgacgcg gttgcgccga ttgaccttat cctgctaaaa gattgcttgt
    11401 ggtatgacgc gcagagtctg aatctcatgc aacagcaact ggaaatattg atgaccggac
    11461 acgcctggca gcagcaggcc atgctgactc gcctcggcgg tatcgtccag cgccgcctcc
    11521 agttgcagca acagcaaagc gataaaaccg ccttcaccgt cattaaagaa ggcggtatgt
    11581 tcagccgtcg cccgcattac actttaccgc cggaagccag tgcgtcaacg ttgacgttat
    11641 tgctacaaaa accgctaaaa ctgcatgata tggaagtgat ccatattacc tttgaccgca
    11701 gcgcgctgga actttggctg accaaaggcg gcgagatccg cggcaaactg aacgggatcg
    11761 gctttgccca aacgctgaat atggaagtcg ataacgctca acatccggtg gtgcgcgaca
    11821 tcagtctaca aggtacccgt ctggcgttac cgggagcggc tgaagacagt atgcctgcgg
    11881 agatcaaaca gcagctggaa acgttagaaa acgactggcg ccagcagcat acccgcttca
    11941 gcgagcagca acattgcctg tttattcaca gcgactggtt agggcgcatt gaggccagcc
    12001 tgcaggatgt aggagaacag atccgccagg cgcaacaatg ctgacgctgg atacgctaaa
    12061 taccatgctg gccgtcagcg aagagggaat ggtcgaagag atgatcctcg cgctactggc
    12121 ttccccacag ctggtcattt tctttgaaaa gtttccacgt ttaaaaaacg ccgtgaccgc
    12181 cgatctcccg cgctggcggg aagcgctacg cagccgtctt aaagacgcac gcgttccgcc
    12241 ggaactcacg gaagaggtca tgtgttatca gcaaagccaa cttctctcta ccccacagtt
    12301 catcgtgcaa ctgccgcaaa tactggcgtt gcttcatcgc ctgcattcac cgtatgccgc
    12361 gcaggcgaag cagttgacgg agagcaacag tacctttacc cctgcgctac acacgctttt
    12421 tttgcaacgc tggcggttaa gtctggtcgt gcaggccacc acgttaaacc agcaactact
    12481 ggaagaagag cgcgagcagt tgctgagtga cgtacaggaa cggatgacgc tgagcgggca
    12541 actggaaccg acgttggcgg aaaatgataa tgccgcaggc cgcctgtggg atatgagcgc
    12601 gggccagctt aaacgtggtg attatcaact gatcgtaaaa tacggcgaat ttctcgccgc
    12661 ccagccggag ctaatgcaac tggcggaaca actgggacgt tcgcgggaag ccaaatcggt
    12721 accgaaaaaa gacgcgccga tggaaacctt tcgtacactg gtacgcgaac ccgcaacggt
    12781 gccggagcag gttgacggta ttcagcaagg cgatgatatt ctgcgcctgt tgccgccaga
    12841 gctggcgacg ctcggcatca ccgagctgga atatgaattt taccgccggt tagtggaaaa
    12901 acagctcctc acctatcgcc tgcatggcga agcgtggcgt gagaaagtga ccgaacggcc
    12961 ggtagtacac caggatgtcg acgagcagcc gcgcggaccg tttattgtct gcgtcgatac
    13021 ttcaggctcg atgggaggat ttaacgagca gtgcgcaaaa gcgttctgcc tggcgttgat
    13081 gcgcgttgcg ctggcggata accgccgctg ctttattatg ctgttttcca ctgacgttgt
    13141 gcgttatgaa ctctccggcc cggaaagtat tgagcaggcc atccgctttt taagtcaacg
    13201 ttttcgcggc ggcacggata tcgccagctg ttttcgcgcc attattgaaa gaatgcaggg
    13261 acgggaatgg tttgatgccg atgcggtggt catttcggat tttatcgccc agcgcttgcc
    13321 ggatgacgtg gtgagcaaag tgggagagtt gcagcgtctt caccagcatc gattccatgc
    13381 ggtggcgatg tcggcgcacg gcaaacccgg catcatgcgc attttcgatc atatctggcg
    13441 ctttgacacc gggatgcgaa gccgcctgct gagacgctgg cgacgctaac ggcttataaa
    13501 atagcaggaa tgctttcgcg aacctgcgcg ggccatacgc cgcactgcac ctgaccaata
    13561 tgcggcaatt gcagcagcaa catcgtcaga cgcgactgcc caatcccgcc gccgatggtc
    13621 tgcggcattt cgccgcgcag cagcgcctga tgccactcca gttgcaggcg atcttcatca
    13681 ccggtcaacg ccagctgacg catcagcgta tcggcatcta cgcggatacc catagaggaa
    13741 agctcaaacg catcttccag caccgggttc cacactagga tatcgccgtt cagaccagcg
    13801 tagcccagct cagatgcgga gctccagtca tcataatccg gcgcgcgtac atcatggcgg
    13861 cggccatcgc tcagtttacc gccgatcccc accaggaaaa cggcgccaag ttctttggcg
    13921 atcgcgcgtt cgcgcccttt cgcatccaga tccgggaaac gcgccagcag ttcctgactg
    13981 tgaacaaaat ggatctgatc cggcaggaac ggcgccagac caaactgttt atgcacttcc
    14041 gcttccgtcg ccttaatgcc tgcccatata gcctctactg tgcttttcag ggtggaaaat
    14101 tggcgctcgc catcgcccat gacacgctcc cagtcccact gatccacata gaccgagtgg
    14161 agcggagaga gtcggtcttc atcggggcga agggctttca tgtgcgtgta cagcccttcg
    14221 cccgcgctga agtcatgttg ccccagggtt tgacgtttcc acttcgccag tgaatgcacc
    14281 acttcgaact gggcgtcagg caacgctttc acttttacct gcaccgcttt ttcacagccg
    14341 gacaaattat cctgcgtacc atcccctacg cgactcagga tcggcgcctg gacctcaatc
    14401 agacccagac gctcctctag ctggcgagag aaatgtgatt tcacgaagct aatttgacgt
    14461 tgtttggcaa tgtaagcggt tttcattttt ttactcctgc gtcctgttgc ctatgattaa
    14521 gcaacaaaac gagagcacta ttcaataatc aacagataaa aagctaactt cgattttgat
    14581 tcgttaaaaa taatggctaa aatagagata atcattaatc tgcataagaa aaagcgatgg
    14641 aaaattatca gatcgacaat ctggaccgcg gcatacttga cgccttaatg gaaaatgccc
    14701 gcaccgccta cgccgaactg gccaaacaat ttggcgttag ccctggaacc attcatgttc
    14761 gcgtcgagaa aatgaagcag gccgggatca ttacgggcgc acggattgac gtcagcccta
    14821 aacaactggg ctacgatgta ggctgcttta ttggcatcat cctcaaaagc gccaaagact
    14881 atccctccgc actggcccgg ctggaaagcc tggatgaggt gacggaagcg tattacacca
    14941 ccggtcacta cagcatcttt ataaaagtga tgtgcaaatc aattgacgcg cttcagcacg
    15001 tacttatcaa caagatccaa acaattgatg aaattcagtc cactgagaca ctgatcgtct
    15061 tgcagaaccc gatcatgcgc accatcaagc catgatcggc ttttttaatc ccacattttt
    15121 ccacaggtag atcccagctc gttcacagag tacaatgcag cctctttacc tgagcgagcg
    15181 atcaatggca gacattactc ttatcagcgg cagcaccctg ggcggcgccg aatacgtcgc
    15241 ggaacatctg gcggaaaagc tggaagctgc cggtttttca accgaaacgg tgcacggtcc
    15301 gttattagag gatctgtcaa cttccgggat ctggctgata atcagctcaa cgcacggcgc
    15361 cggagacatt ccggacaacc tgaccccttt ctatgaagac cttcagacgc agaaacccga
    15421 tctttccgcg gtacgtttcg gcgcaattgg cattggcagt cgagaatacg acacgttttg
    15481 cggcgcgatt gagaaaatag aagcggaact gaaaggcgct ggcgcaaaac aggttgggga
    15541 aacactgaag atcaacatcc ttgaacatga gattccggaa gatccagcgg agatttggct
    15601 cggatcctgg attaatttac tcaaataagt gtaaagatcg tgcgatctat tgtggataaa
    15661 tatggtgaaa agcttggatc aaccggtagt tatccaaaga ataacctttg ttcacttttt
    15721 gagttgtgta taagtacccg ttttgatccc agcttatacg ggccacgatc accgatcatt
    15781 cacagctagt gatcctttcc aacgcattga tctttattac aggatccggg ttatccacag
    15841 cctggtgcga tcctaataag agatcacaat agaacagatc tctaaataaa aagatcttct
    15901 ttttaatagc ccggatcccg gggctttctc catcggctaa agttgagtag aatccaccgc
    15961 ccgggcttca atccattttc acaccgcgtt atgcgaggca attaccatgt tttatcagga
    16021 tccttttgac gtcattatta ttggcggggg tcatgcaggc actgaggccg cgatggccgc
    16081 agcgcgtatg ggtcaacaga ctctgctttt gacacacaat attgacacgt tggggcagat
    16141 gagctgcaac ccgacgatcg gcggtattgg caagggacat ctggtaaaag aggtggatgc
    16201 gctcggcggt ctgatggcga aagcgatcga tcaggcaggt attcagttta agatactaaa
    16261 cgccagcaaa ggtccggccg ttcgcgctac ccgagctcag gcggatcgag tcttatatcg
    16321 ccaggcggta cgtatcgcgc tggagaatca gccgaatctg atgatcttcc agcaagcggt
    16381 tgaagatctg attgtcgaaa acgatcgcgt tgtcggcgcc gtgacccaaa tggggctcaa
    16441 attccgcgcg aaagcggtgg tgctgaccgt cgggactttc ctggacggca aaattcatat
    16501 tggtctggat aactacagcg gcggtcgtgc tggcgatccg ccatccatcc cgctgtctcg
    16561 ccgtctgcgt gagcttccgc tacgcgtcag ccgcctgaaa accggcacac cgccgcgtat
    16621 tgatgcgcgt actatcgatt tcagcgtgtt ggctcaacag catggcgata acccgatgcc
    16681 ggttttctcg tttatgggga atgcttttca gcatccgcaa caggtgccgt gttacatcac
    16741 gcataccaat gagaaaaccc atgacgtgat tcgtaataac ctcgatcgta gcccaatgta
    16801 cgctggcgtg atcgaaggga tcggcccacg ctactgtcct tcgatcgaag acaaggtgat
    16861 gcgttttgcc gatcgtaacc agcatcagat cttccttgag ccggaaggac tgacctctaa
    16921 cgagatttac cctaacggta tctccaccag cctgccgttt gacgtgcaga tgcagattgt
    16981 ccgttccatg cagggcatgg agaacgcgaa gatcgttcgc cctggttacg cgattgagta
    17041 tgatttcttc gacccgcgag atctgaaacc gactctggaa agtaaattta ttcacggcct
    17101 gttctttgct ggtcaaatca acggtactac cggctatgaa gaggctgcgg cgcagggctt
    17161 gctcgctggt ctgaatgccg cgcgtctttc cgccgacaaa gagggctggg cgcctgcgcg
    17221 ttctcaggct tatctcggcg tgctggtgga cgatctctgt acgctgggca ccaaagagcc
    17281 gtatcgcatg tttacctccc gcgccgaata tcgcctgatg ctgcgtgagg acaacgccga
    17341 tctgcgtctg accgaaatgg gccgcgagct gggtctggtg gatgatgaac gctgggcgcg
    17401 cttcaacgag aagctggaaa atatcgaacg cgaacgtcag cggctgaaat cgacatgggt
    17461 aacgccgtct gcggaatccg ctgatgaagt gaatgcgcat ttgaccacgc cactctcccg
    17521 tgaggccagc ggcgaagatc tgttgcgtcg tccggaaatg acatatgcgc agctcacttc
    17581 gcttgccgca ttcgcgcctg cgcttgaaga tgagcaagcc gctgaacagg tggaaatcca
    17641 ggtcaaatac gaaggctata tcgctcgcca gcaggatgag attgaaaaac aactacgtaa
    17701 cgagaatacg ttgctgcctg ccacgctgga ttatcgtcag gtttccggtc tgtcgaacga
    17761 agttatcgcc aagctgaacg atcataaacc ggcgtctatc ggccaggcat cgcgtatctc
    17821 cggcgttacg ccagcggcaa tctccattct gctggtatgg ctgaaaaaac aaggtatgct
    17881 gcgtcgtagc gcttgataac actaatttgg cgggggcgct tcgcttgccc gccctacaaa
    17941 tttgtaggcc cgataagcga aagcgcatcg ggcatttgat tattaacagg taatgaccgt
    18001 gctcaacaaa ctctctcgtc tgctggctga tgccggtatt tctcttaccg atcaccagaa
    18061 aacgctgctg gtcgcctacg ttgatatgct gcacaaatgg aacaaagcat acaacctgac
    18121 gtcagtgcgg gatcccaacg aaatgttggt acgccatatt ctcgacagca tagtcgttgc
    18181 gccgtatctg cagggacagc gttttatcga tgtaggaaca ggaccggggc tgccgggcat
    18241 cccgctggct attgttctcc ctgacgcgca tttcacctta ctcgacagcc tgggcaagcg
    18301 ggtacgtttt ctgcgtcagg tccagcacga actgaaactg gaaaacatca cgccggttca
    18361 aagccgcgtt gaagcctatc cctccgaacc gccgtttgat ggcgttatca gccgcgcttt
    18421 cgcatcgttg aatgatatgg tgagctggtg tcaccatctg ccgggagaga aaggacgttt
    18481 ttatgcctta aaagggcaat tgccagggga tgaaattgcc tcactacctg acaattttag
    18541 cgtcgaatct gttgaaaaat tacgcgttcc gcaactggaa ggcgagcggc atctggtgat
    18601 tattaagtca aacaaagttt aatttttatc aaaaaaaata gaaaaaacga cgcggcttgt
//
LOCUS       DAJVSD010000065        18637 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.065, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000065 DAJVSD010000000
VERSION     DAJVSD010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 18637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18637
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.065"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            308..940
                     /gene="fimZ"
                     /locus_tag="OQP62_001873"
     CDS             308..940
                     /gene="fimZ"
                     /locus_tag="OQP62_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria biosynthesis transcriptional regulator
                     FimZ"
                     /protein_id="HCS1721444.1"
                     /translation="MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEY
                     LRTYPVDLVILDIELPGTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANG
                     FVSKRKDLNDIYNAVKIILSGYSFFPSETLNFISNTRPPKGGHHDMPLSNREVTVLRY
                     LANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL"
     gene            complement(986..1504)
                     /gene="sfmF"
                     /locus_tag="OQP62_001874"
     CDS             complement(986..1504)
                     /gene="sfmF"
                     /locus_tag="OQP62_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria assembly protein"
                     /protein_id="HCS1721445.1"
                     /translation="MILRRVFIAIGCVLLSPLSQANSSLGEVNIELRGNVVDFTCAVV
                     AGDSNKSVNLGTWPTKQLHVAGDATQPVAFSLKLEGCPPGSASITFSGTPAPGTALLA
                     LADTAMAQKLAIEIRDGDQRRLPLEQASKAVDIDNNGNATLKFYANYIALADGVQPGL
                     ANADATFLINYN"
     gene            complement(1514..2521)
                     /gene="fimH"
                     /locus_tag="OQP62_001875"
     CDS             complement(1514..2521)
                     /gene="fimH"
                     /locus_tag="OQP62_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrin D-mannose specific adhesin FimH"
                     /protein_id="HCS1721446.1"
                     /translation="MKIYSALLLAGTALFFTHPALATVCRNSNGTATDIFYDLSDVFT
                     SGNNQPGQVVTLLKKSDWCGVNATCPAGTTVNYTYRSYVSELPVQSTEGNFKYLKLND
                     YLLGAMSITDSVAGVFYPPRNYIRMGVDSNVSQQKPFGVQDSKLVFKLKVIRPFINIV
                     TIPRQTMFTVYVTTSTGDALSTPVYTISYSGKVEVPQNCEVNAGQVVEFDFGDIGAPL
                     FSQAGAGNRPQGVTPQAKTIAIKCTNVAAQAYLSMRLEAEKASGQAMVSDNPDLGFVV
                     ANSNGTPLTPNNLSSKIPFHLDDNAAARVGIRAWPISVTGNKPAEGPFTARGYLRVDY
                     D"
     gene            complement(2536..5148)
                     /locus_tag="OQP62_001876"
     CDS             complement(2536..5148)
                     /locus_tag="OQP62_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis usher protein"
                     /protein_id="HCS1721447.1"
                     /translation="MKKTTWFAGRFPGYVSPLSGVALSVLAALCPLTSRGESYFNPAF
                     LSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFVATQDIRFEAGAVGAGDKSGGLM
                     PCFTPERIKRLGVNTAVFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS
                     LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGA
                     WSYSKGDGYHSQRWNNIGTWVQRAIIPLKSELVMGDSHTGNDVFDSVGFRGARLYSSD
                     NMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVPPGAFAITDLNPTSSSGDLE
                     VTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSLFFFQGTVIAG
                     LPAGLTAYGGTQLADRYRAVVVGAGQNLGDWGAVSVDVTHARSQLADDSTHQGQSLRF
                     LYAKSLNNYGTNFQLLGYRYSTRGFYTLDDVAYRSMEGYDYEYDSDGRRHKVPVAQSY
                     HNLRYSKKGRFQVNISQNLGNYGSLYLSGSQQNYWNTADTNTWYQLGYASGWQGISYS
                     LSWSWSESVGISGADRILAFNMSVPFSVLTGRRYARDTILDRTYATFNANRNRDGDNS
                     WQTGVGGTLLEGRNLSYSVTQGRSSTNGHSGSASASWQATYGTLGVGYNYDRDQHDYN
                     WQLSGGVVGHTDGITFSQPLGDTNVLIKAPGAKGVRIENQTGVKTDWRGYAVMPYATV
                     YRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLP
                     FGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQ
                     AITIASATCIRPSS"
     gene            complement(5179..5871)
                     /gene="fimC"
                     /locus_tag="OQP62_001877"
     CDS             complement(5179..5871)
                     /gene="fimC"
                     /locus_tag="OQP62_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria chaperone FimC"
                     /protein_id="HCS1721448.1"
                     /translation="MLNSIKLGFIVLLTLFTSLNVQAAGGIALGATRVIYPSAAKQTS
                     LAISNSDTQERYLVNSWIENNAGQKEKTFIVTPPLFVSEPKSENTLRIIYAGQPLPED
                     RESLFWMNVKAIPSVDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSR
                     VGNHLKITNPSAYYLTLVNISVGAKKIDNVMIAPKSDMQIPLPTGAQGSVTFQTVNDY
                     GALTSATTASLG"
     gene            complement(5915..6448)
                     /gene="fimI"
                     /locus_tag="OQP62_001878"
     CDS             complement(5915..6448)
                     /gene="fimI"
                     /locus_tag="OQP62_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein subunit FimI"
                     /protein_id="HCS1721449.1"
                     /translation="MIRKGAALVGLVLMSPVIAQPVMVESGRVHLRGQLVNGGCAVAT
                     ESQDLRVLMGQYRTNAFTGPGSFAPVSVPFSLRLISCSAEVWRHVGIAFAGVTPAEDP
                     HVFLASGEGIGNAGIGLALFDDQQRQIIPNTLPLHYAPILTSEMTLHFTARYRAISEN
                     MTPGRIHSEVWFTLVYP"
     gene            complement(6523..7077)
                     /gene="fimA"
                     /locus_tag="OQP62_001879"
     CDS             complement(6523..7077)
                     /gene="fimA"
                     /locus_tag="OQP62_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459538.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein subunit FimA"
                     /protein_id="HCS1721450.1"
                     /translation="MKHKLMTSTIASLMFVAGAAVAADPTPVSVSGGTIHFEGKLVYA
                     ACAVSTKSADQTVTLGQYRTASFTAIGDTTAQVPFSIVLNDCDPKVAATAAVAFSGQA
                     DNTNTNLLAVSSADNSTTATGVGIEILDNTSSPLKPDGATFSAKQALVEGTNTLRFTA
                     RYKATAAATPGQANADATFIMKYE"
     gene            7624..8490
                     /gene="folD"
                     /locus_tag="OQP62_001880"
     CDS             7624..8490
                     /gene="folD"
                     /locus_tag="OQP62_001880"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HCS1721451.1"
                     /translation="MAAKIIDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSN
                     PASQIYVASKRKACDEVGFVSHSYDLPETTSEAELLALIDTLNADNTIDGILVQLPLP
                     AGIDNVKVLERIAPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTYGL
                     NAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPG
                     EWIKEGAIVIDVGINRLENGKVVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTL
                     QACIEYHDPQGK"
     gene            8492..8704
                     /gene="ybcJ"
                     /locus_tag="OQP62_001881"
     CDS             8492..8704
                     /gene="ybcJ"
                     /locus_tag="OQP62_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein YbcJ"
                     /protein_id="HCS1721452.1"
                     /translation="MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIADGLVKVDGA
                     VETRKRCKIVAGQTVSFEGQSVNVVA"
     gene            8788..9336
                     /locus_tag="OQP62_001882"
     CDS             8788..9336
                     /locus_tag="OQP62_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001728132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS1721453.1"
                     /translation="MPTVITHAAVPLCLGAGLGLKVIPPRLLFAGVVLAMLPDADVLA
                     FKFGVAYGNVFGHRGFTHSLLFAFVLPLLCVLAGRRWFRAGQVRCWLFLTVSLLSHSL
                     LDSITTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSSYITPYGHQVIVSELLWVWLP
                     GGVLIGILGWHRWRIGDEKRTR"
     gene            complement(9427..10812)
                     /gene="cysS"
                     /locus_tag="OQP62_001883"
     CDS             complement(9427..10812)
                     /gene="cysS"
                     /locus_tag="OQP62_001883"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HCS1721454.1"
                     /translation="MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTF
                     VAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHQDFDA
                     LNILRPDSEPRATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDL
                     EQLQAGARVDVVDVKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLG
                     NHFDIHGGGSDLMFPHHENEIAQSTCAHDGEYVNYWMHSGMVMVDREKMSKSLGNFFT
                     VRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAG
                     GEAFEARFVEAMNDDFNTPEAYSVLFDMAREVNRLKGEDMTAANAMASHLRKISGVLG
                     LLEQEPDVFLQSGAQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLTEMGIILE
                     DGPQGTTWRRK"
     gene            10985..11479
                     /gene="ppiB"
                     /locus_tag="OQP62_001884"
     CDS             10985..11479
                     /gene="ppiB"
                     /locus_tag="OQP62_001884"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017465360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase B"
                     /protein_id="HCS1721455.1"
                     /translation="MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRV
                     INGFMIQGGGFEPGMKQKATKEAIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINV
                     ADNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIENV
                     TVSE"
     gene            11482..12204
                     /gene="lpxH"
                     /locus_tag="OQP62_001885"
     CDS             11482..12204
                     /gene="lpxH"
                     /locus_tag="OQP62_001885"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HCS1721456.1"
                     /translation="MATLFIADLHLQTEEPAIVAGFLRFLAVEARQADALYILGDLFE
                     AWIGDDDPNPLHREMAVAIKSLVDSGVPCFFIHGNRDFLIGKRFARESGMTLLPQEKV
                     LDLYGRNVLIMHGDTLCTDDAGYQAFRAKVHNPWVQRPFLTLPLFIRRRIAARMRAGS
                     KAANSSKSLDIMDVNAQTVVAEMEKHRVQWLIHGHTHRPAVHELSANGQPAFRVVLGA
                     WHHEGSMVKVTPDNVELIAFPL"
     gene            12322..12831
                     /gene="purE"
                     /locus_tag="OQP62_001886"
     CDS             12322..12831
                     /gene="purE"
                     /locus_tag="OQP62_001886"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HCS1721457.1"
                     /translation="MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILDVPHHVEVVSA
                     HRTPDKLFSFAETAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVD
                     SLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDSALHRRIADWRKAQTDEVL
                     ENPDPRGTL"
     gene            12828..13895
                     /gene="purK"
                     /locus_tag="OQP62_001887"
     CDS             12828..13895
                     /gene="purK"
                     /locus_tag="OQP62_001887"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HCS1721458.1"
                     /translation="MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPTAVPVQQS
                     VITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLGLATAPWQLLSS
                     ADEWSGIFDRLGELAIIKRRVGGYDGRGQWRLRADETGQLPDDCYGECIVERGIHFSG
                     EVSLVGARAHDGSTVFYPLTHNLHQDGILRTSVAFPQANAEQQEQAESMLSAIMQALN
                     YVGVMAMECFITPEGLLINELAPRVHNSGHWTQNGASISQFELHLRAITGLPLPAPVI
                     NAPSVMINLIGSELNYDWLKLPLVHLHWYDKAVRPGRKVGHLNLTDSDTSRLSATLEA
                     LSPLLPGEYASGIIWAQSKLK"
     gene            complement(13936..14829)
                     /locus_tag="OQP62_001888"
     CDS             complement(13936..14829)
                     /locus_tag="OQP62_001888"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HCS1721459.1"
                     /translation="MKTLVVALGGNALLQRGEALTAENQYRNIADAVPALARLARSYR
                     LAIVHGNGPQVGLLALQNLAWKAVEPYPLDVLVAESQGMIGYMLAQRLALEPDMPPVT
                     AVLTRIKVSADDPAFLEPEKFIGPVYSPEEQMALEATYGWHMKRDGKYLRRVVASPAP
                     RQIIESTAIELLLKEGHVVICSGGGGVPVAGEGEGVEAVIDKDLAAALLAEQIAADGL
                     IILTDADAVYEHWGTPQQRAIRQASPDELAPFAKADGAMGPKVTAVSGYVKRCGKPAW
                     IGALSRIDDTLAGRAGTCICL"
     gene            complement(14833..15642)
                     /locus_tag="OQP62_001889"
     CDS             complement(14833..15642)
                     /locus_tag="OQP62_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2877 domain-containing protein"
                     /protein_id="HCS1721460.1"
                     /translation="MKRIHPLMASRQSADYRQPWQMSGVWRRSINFVAKSGELLTLHR
                     RGSGFSPGGWILRGGDFDALRDVLTDGEKPQLTAAGIQIGEFLLCEPERRCSLRVPRY
                     LASPRLNATYMQRSEETGLFGPLTVAAAQPLCPELRQFCHCFQSALAGAATDWRLWLG
                     KGPGLTPSHEDTLTGMLLAAWYFGAIDERAGRNFFAQSGSLDRATTLVSVSYLRYAAM
                     GYFASPLLHFIHALRRDARTETAIDGLLALGHTSGADTLLGFWLGQQIVKG"
     gene            complement(15654..16913)
                     /locus_tag="OQP62_001890"
     CDS             complement(15654..16913)
                     /locus_tag="OQP62_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1116 domain-containing protein"
                     /protein_id="HCS1721461.1"
                     /translation="MFTSVAQANAAVIEQIRRARPHWLDVKPASSLISVLNQGKTLLH
                     AGPPMRWQEMTGPMKGACIGACLFEGWAKDEMSALALLEQGKVNFIPCHHVNAVGPMG
                     GITSASMPMLVVENITDGNRAYCNLNEGIGKVMRFGAYGEDVQQRLRWMRDVLMPVLS
                     AALGRLERGLDLTAMMAQGITMGDEFHQRNIASSALLMRTLAPHIARLQHDKQQIAEV
                     MDFLSVTDQFFLNLAMAYCKAAMDAGAQIRAGSIVTAMTRNGDMFGIRVSGLGDRWFT
                     APVNTPQGLFFTGFSQDQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAAK
                     SVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQ
                     IGAGTVRAPLACFEQALEALAESMGVS"
     gene            complement(16923..18587)
                     /locus_tag="OQP62_001891"
     CDS             complement(16923..18587)
                     /locus_tag="OQP62_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase FdrA"
                     /protein_id="HCS1721462.1"
                     /translation="MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKS
                     LLETTGFWHDDFHGATPNDICVAIRTEAVDDGITQVIVRQLEEALQQLAQGSSGSQSL
                     IQVRRWESACQKLPEANLALVSVAGEYAAELAEQALARSLNVMIFSDNVTLDDEIRLK
                     RRARDKGLLVMGPDCGTAMIANTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGE
                     GITHAIGLGGRDLSAEVGGISALTALDILSADEKSQVLAFVSKPPADAVRQHIIAAMK
                     ATGKPVVALFLGFSSPVAREENVWFASTLDEAARLACLLSRVTSQRKEMVSTGGVIRG
                     LYTGGTLAAEAAGLLAGYLGVATDTEHHHGMMLDADGHQIIDLGDDFYTVGRPHPMID
                     PALRNQLIAGLGAQPQVRVLLVDVVIGFGATADPAASLIQAWQKACAARASDQPLFAI
                     ATVTGTERDPQCRSQQIAALEDAGITVVDSLPEATLLAAELIRPTLSSTHPSAPRLLE
                     AVAVINAGLRSFALDLQAAGMPVVHYQWAPVAGGNKKLARLLERLQ"
BASE COUNT         4254 a         5318 c         4781 g         4284 t
ORIGIN      
        1 attttctata acgtcacaga acatcctacc cgctatccat aattcgcatt tcgcaagact
       61 tttccgagaa atcagaccag gtataatcca tattgttttt acttaatcag aaatttcttt
      121 tttgttggtg cgaaatggat attccacata tttattactc ttacgcaaaa tagccagtca
      181 acagggaggt ctcattcttt attattgctc caccgtgtgg tgtgtagatc tggctatttc
      241 acaatcttta aggtgtctga cgcttattct aaaacgaagg acgcataaca gtctgaggca
      301 tacaacaatg aaacctgcat ctgttatcat tatggacgaa caccctattg taagaatgtc
      361 gatcgaagtt ttactcggta aaaatagcaa tattcaggtt gtcctgaaaa cggatgatag
      421 ccgaacagcg atagagtatc tgcgcactta tcctgttgat cttgtcattc tggatattga
      481 attaccgggc accgacggct ttaccttact taaacgaatc aaatctatcc aggaacatac
      541 ccggatactt tttttatcgt cgaaatcaga ggctttttat gccggaagag caataagagc
      601 gggcgcaaac ggatttgtaa gtaaacgcaa agacctcaat gatatttata atgcggtaaa
      661 aataatttta tccggctatt ctttttttcc atctgagacg cttaacttta tcagtaatac
      721 ccgtcccccc aaaggcgggc accatgatat gccactttct aaccgcgaag ttaccgtgct
      781 gcgctatctg gccaatggaa tgtctaacaa agaaattgcc gagcaacttt tattgagtaa
      841 caagactatc agcgcgcata aggccaatat attttctaaa cttggccttc actctatcgt
      901 tgagcttatc gattacgcca aatcacacga attattgtaa atgtactccc ggcgaattat
      961 cgttcgggag ccaaaataac ggacactaat tgtaattgat caggaaggtc gcatccgcgt
     1021 tagcaagacc gggctgcacg ccatcggcta aggcgatata gttcgcatag aatttcaggg
     1081 tagcattgcc gttgttgtca atatcgacgg ccttgctggc ctgttcaagt ggcaatcgac
     1141 gttgatcgcc atcgcgaatt tcaatcgcca gtttttgcgc cattgccgta tcagcaagcg
     1201 ccagtaatgc cgtgccgggc gctggcgtcc cggaaaacgt tatagacgcc gaacctggcg
     1261 ggcagccttc aagttttagg ctaaaggcta ccggttgcgt agcgtccccg gcgacgtgaa
     1321 gctgttttgt cggccaggtg ccgaggttaa ccgacttgtt actgtcgccc gcaaccacgg
     1381 cgcaggtaaa atccaccacg ttaccgcgca gttcaatatt cacttcgccc agagatgagt
     1441 tggcctgact cagcgggctt aacaaaacac aaccgatagc gatgaaaacg cgccgaagaa
     1501 tcattatgcc tccttaatca taatcgactc gtagatagcc gcgcgcagta aacggccctt
     1561 ccgccggttt attccccgtc acgctgatcg gccaggcgcg aatacctacg cgagcggcgg
     1621 cgttatcatc aagatgaaac ggaattttac tcgacaaatt attgggtgtg agcggcgtac
     1681 cgttgctatt agcaaccaca aagcctaaat ccgggttatc ggacaccatc gcctgccctg
     1741 aggccttttc ggcttcaagc cgcatcgata aataggcttg cgccgcgacg ttggtacatt
     1801 tgatagcgat agttttcgct tgcggcgtga cgccttgcgg acgattaccc gctcccgcct
     1861 gactaaataa cggcgcgccg atatcgccga aatcaaactc cacgacctgt ccggcattca
     1921 cttcacagtt ttgcggtact tccactttgc cgctgtagct aatggtatac accggcgtgc
     1981 tcaacgcgtc gccggtagag gtcgtcacat agacggtaaa cattgtctgg cgggggatcg
     2041 tcactatatt aataaaaggc cgtatcactt ttaatttaaa aaccagcttt gagtcctgca
     2101 cgccaaacgg cttttgctgc gacacgttag agtcgacgcc catgcgaata tagttacggg
     2161 gcggataaaa tacgccagcg acactatcgg ttatgctcat cgcgcccaga aggtagtcat
     2221 tcaacttgag gtatttaaaa tttccttcgg tgctttgtac cggtaattct gatacatagc
     2281 ttcggtaggt ataattcacc gttgtccccg ccgggcacgt cgcgtttacg ccgcaccaat
     2341 ctgatttttt cagcagcgtc accacctgtc ccggctgatt attgccgctg gtgaaaacat
     2401 ctgacaggtc ataaaagata tcggtcgccg tcccgtttga attacggcaa accgtcgcca
     2461 gcgcgggatg ggtgaaaaag agtgcggtcc ccgccagcaa tagcgctgag tatattttca
     2521 tctctatttt tccttttatg acgacggacg gatacaggtc gcgctggcta tcgtaatcgc
     2581 ctgcttcagg ctatcctccg ccagggcgta aggggcgata caacgcgcgt ttttcccctc
     2641 tccccactgg atgaacagtt caccttttag cggcaagccg ctcagataaa tttgtccgtc
     2701 atcgccgacc atgctggtaa tgccgctggc ggtttctcgt actatcgcgc caaacggtaa
     2761 cggacgtccg ccaagcctcg cggtaatgat tgcccttacg cctatccgcg tatcaaaagc
     2821 agcccgcacc agcgcgcctt cagtcggcac cacgctgctg acgttatttt cgacatcggt
     2881 atggttgtcc atcgtgttgg tatctaacgc gacgcggtta tagcgatata ccgtggcgta
     2941 gggcattacc gcatagcccc gccagtccgt tttcacgccg gtctggtttt cgatgcgcac
     3001 gcctttcgct cccggcgctt taatcaagac attggtatcg cccaacggtt ggctaaacgt
     3061 aataccatcc gtatgaccga ccacgccgcc ggaaagttgc cagttatagt catgctgatc
     3121 gcgatcgtag ttatatccca cgcccagcgt gccatacgtc gcctgccagc tagcgctggc
     3181 gctgccgcta tgaccattgg tactgctacg cccctgcgtc acgctgtagc tcagattacg
     3241 tccttccaga agcgtgccgc ccacaccggt ctgccagcta ttgtcgccgt cgcggttgcg
     3301 gttggcgtta aacgtggcat aagtacgatc aagaatagtg tcgcgcgcat agcgccgtcc
     3361 ggtcagaacg ctaaacggaa cggacatatt gaatgccaga atgcggtcgg cgcctgagat
     3421 ccccaccgac tcgctccacg accatgacag cgaataactt atgccttgcc atccactggc
     3481 gtatcccagt tgataccagg tattggtatc cgccgtattc cagtaatttt gttgactgcc
     3541 ggaaagatac agtgacccgt aattccccag attttgcgaa atattgacct gaaagcggcc
     3601 ttttttgctg tagcggagat tgtggtagct ctgcgccacc ggcactttat ggcggcgtcc
     3661 gtcgctatcg tattcgtagt cgtacccttc catactgcgg tatgccacat catccagggt
     3721 gtaaaatccg cgcgtggaat agcggtaacc cagcaattga aaattagtcc cgtaattatt
     3781 cagcgatttg gcgtacagaa aacgcaacga ttgcccctga tgggtgctgt catctgccag
     3841 ttggctacgc gcatgtgtga catcgaccga cacggccccc cagtcaccca aattttgccc
     3901 cgccccgacc accacagcac ggtaacgatc ggcaagttgc gtaccgccgt aagccgtcag
     3961 ccccgcaggc aggccggcaa tcaccgttcc ctggaaaaag aatagcgaag actgctgact
     4021 attgccgctg cgaaaatccc cggccaccag gtcatacttc accctgccct cacgctgcaa
     4081 tagcggaacg gtagagtaag gcaccgtgta acgttgttgg ctaccgtctt tttcatctac
     4141 cgtcacctca aggtcgccgc tggaagaggt aggattaaga tcggtaatcg caaacgcgcc
     4201 cggcggcaca tagctttggt agataacata cccgttctgt cgtatcgtca gctttgccgc
     4261 cgtccgggcg atccctctga ccgtgggggc gtagccctgc aggctatcgg gatacatatt
     4321 gtcagaagag tacagccgcg ctccgcgaaa gccgacgctg tcgaaaacat cgttcccggt
     4381 atggctgtcc cccatgacca gttcgctttt tagcggaatg atggcgcgct gtacccaggt
     4441 gccaatgttg ttccagcgtt gcgaatgata gccgtcccct ttcgaatagc tccaggctcc
     4501 gttattacgc agccgccagg ggccatagtt caacccgctc agcagactca aaaaatagct
     4561 atcgctgtct gttccgcggc taccggtaaa actgtaatta atgagtgcgg cgggtatccc
     4621 ttcatcccac tcttccggcg ggatatagcc acgcgcgctg ttgagcaatg acgcctgcgg
     4681 caagctaatg tttaagcgca tcgacgcgaa atcgaacgcg acctccgcgc ccgggatttt
     4741 ctcaggaagg tgaatacacg tggtatcgac gcctttatct gagacaggga acaccgcggt
     4801 attcacgccc agccgtttaa tcctctccgg tgtaaaacaa ggcatcaggc cgccggattt
     4861 atcgccggcg cccacggcgc ccgcctcaaa acgaatatcc tgcgtcgcta cgaattcgtc
     4921 gttacgccag atatccaccc ggtaaatacc gggaggctga tgattacctt tttcaaagcg
     4981 agataaatcc gccacggacg cggtatccgc cgacaaaaac gcagggttga aataactttc
     5041 gccgcggctc gtcagcggac acagagctgc caacaccgac agcgccacgc cgcttaacgg
     5101 tgatacatag ccgggaaatc gccctgcaaa ccaggttgtc ttcttcatcg tgttctcgtg
     5161 tggcttcacg ctctctgctt aaccgagact ggctgttgtc gccgacgtca atgcgccgta
     5221 atcattgacg gtctgaaatg tcacgctgcc ctgcgcgcca gtcggtaagg gaatttgcat
     5281 gtcgcttttt ggcgcgatca tcacgttatc aatctttttc gcacccacgc tgatattgac
     5341 cagcgtgagg taataagcag atgggttggt tatcttgaga tggttgccga cacgggaaaa
     5401 tttcagcaag gtcggcgcgt cttccggcgt ctgcggcaaa ttcgccggac gcacgaacag
     5461 tttgatgcgc gacagaatcg ccagttgcag aacgtttttt ccttcaatat gacttttatc
     5521 gaccgacggg atggctttca cgttcatcca gaataacgac tcccgatcct cgggtagcgg
     5581 ttgcccggcg tagataatac gcagcgtgtt ttcacttttg ggctcgctga cgaataaagg
     5641 cggcgtaacg ataaacgttt tttctttctg cccagcgtta ttttcgatcc atgaattgac
     5701 gaggtaacgt tcttgagtat cgctattact gattgccaga gaagtctgtt tcgccgccga
     5761 gggataaata acacgcgtgg cgcctaatgc aatccccccc gccgcctgta cgttcagcga
     5821 agtaaataac gtgagaagaa caataaatcc taattttata ctattcagca tggtaaaaaa
     5881 taccttttgc attgagtcac gtcggcaaga aaattcatgg gtaaaccagc gtaaaccaca
     5941 cttctgaatg aattcgtccc ggcgtcatat tttctgaaat tgcccgatag cgggcggtaa
     6001 aatgcaaagt catttctgac gttaaaatgg gcgcgtaatg aagcggtaac gtgttaggta
     6061 tgatttgccg ctgctggtca tcaaataacg ccaggccgat tccggcatta ccgatacctt
     6121 cgccgctggc cagaaaaaca tggggatctt ccgcaggcgt aacgccggca aacgcaatgc
     6181 cgacatgacg ccagacctcc gcgctacagg agattaaccg taacgaaaat ggaacgctga
     6241 cgggagcgaa gctgccagga ccggtaaacg cattcgtgcg gtactgtccc atcagtacgc
     6301 gcaaatcctg gctttcagtg gcgacagcgc agccgccatt gaccagttgt ccgcgcaggt
     6361 gaacacgccc gctctctacc attaccggct gcgcaatgac gggcgacatc aaaacaagcc
     6421 ccactagcgc cgcgcctttc cttatcatct gctatgttct cttttatccc cgatagcctc
     6481 ttccgttgag acgcctccct tccctggcgt tccctgacgg gattattcgt atttcatgat
     6541 aaaggtggcg tcggcattag cctggcctgg cgtcgcggcg gcggttgcct tatagcgtgc
     6601 ggtaaaacgc agcgtattgg tgccttcaac cagcgcctgc ttcgccgaga aggtcgcgcc
     6661 gtccggcttc aacggtgagg aggtgttatc aagaatctca atcccgacgc cggttgcggt
     6721 agtgctattg tccgcagagg agaccgccag caaattagtg ttggtgttat ctgcctgacc
     6781 agagaaagcc acggcagcgg tggccgccac ttttggatcg cagtcattca ggacgatgga
     6841 gaaaggcacc tgcgcggtcg tatcaccaat cgccgtaaag ctggcggtac ggtattgacc
     6901 cagcgtcacc gtttgatcgg cggatttagt gctaacggca caggctgcat aaaccagttt
     6961 accttcgaaa tgaatagtac cgccgctcac gctcaccgga gtaggatcag ccgcaaccgc
     7021 tgcgccagcg acaaacatca gactcgcaat agtagaggtc attaatttat gtttcatgga
     7081 ttttccttga attacacaca cccggtttcg atatcctgtc ggctccgttt gaattattat
     7141 cgacatagca tgtcagaaaa gttatctctg catcctgtaa agatagatat cgcagattaa
     7201 ttagttttct gtttctcccc tgagtatcag acgcagtaat taatctttgc gaatatgaca
     7261 tttcgtcacg gtaataaatt aaacatttcg ctaaataaaa aatagccgca aactctttta
     7321 atgacctaag ctaattctta tttggatata agaagggtct aatcttattt tgtataaaat
     7381 gtcgcattat gccgcccgat gctattaacg gcgagggatt acggtaacca tagccagggt
     7441 gatgaattgt ttctttttgg ttaatcatgg cgcgcttact ggtcacgtct cagtatcgtc
     7501 aacggacggg ggagacgtcg cgtttgcatc ggaaacacaa acgttaactg acagcgaggc
     7561 ccgcttctga caaaatagcg ttatcccctt tgacttgaag taacagatgg aatcttctct
     7621 ctgatggcag caaagattat tgacggtaaa acgattgcgc agcaggtgcg atctgaggtt
     7681 gctcaaaaag ttcaggcacg cgtcgcagcg ggtcttcgcg ctcccggcct ggctgtggtg
     7741 ttggtcggca gcaatccggc ctcacagatt tatgtcgcaa gcaaacgtaa agcgtgcgac
     7801 gaagtgggat tcgtctccca ctcctatgac ctgccagaaa ccaccagcga agccgaactg
     7861 ctggcgctta tcgatactct gaatgcagat aacacgatcg atggtattct ggtgcagttg
     7921 cctttaccgg caggtatcga caacgttaaa gtgctggagc gtatcgcgcc ggataaagac
     7981 gtagacggtt ttcatcctta taacgtcggt cgtctgtgcc agcgtgcgcc gcgcctgcgt
     8041 ccctgtacgc cccgcggtat tgtgaccctg cttgagcgct acaatattga tacctacggc
     8101 ctgaatgcgg tggtcattgg cgcgtctaat atcgttggac gcccgatgag catggagctg
     8161 ctgctggctg gctgtacgac taccgttacg caccgcttta ccaaagatct gcgtcatcat
     8221 gtcgagcatg ctgatttgct cattgtcgcc gttggtaaac cgggctttat tcccggcgaa
     8281 tggattaaag aaggcgcaat tgtgattgat gtcggtatta accgtctgga aaatggcaag
     8341 gtcgttggcg acgtcgtgtt tgacgaagcc gcggcgcgcg cgtcatacat cacgccagta
     8401 ccgggcggcg tcggcccgat gacggtcgcc acgcttatcg aaaacacgct gcaggcgtgc
     8461 attgaatatc acgatccaca aggaaaataa catggcgaca ttctctttag gcaagcaccc
     8521 gcacgtcgag ctgtgcgatc tgctcaagct ggaaggctgg agcgaaagcg gcgcgcaggc
     8581 gaaaatcgcc attgccgacg ggttggtgaa ggttgatggc gcggttgaaa cgcgtaaacg
     8641 ctgcaaaatt gtcgccgggc aaaccgttag cttcgaaggc caaagtgtga acgtcgtggc
     8701 ctgattacgc tgtcttttca gataatcatc cacttaatcc tctacgttcc aactgctagc
     8761 atggctattt ccctgtgaac gatcgctatg cctaccgtta tcacccacgc cgccgttcct
     8821 ctgtgtcttg gcgcaggctt aggcctgaaa gttatccctc ctcgcctgct gtttgccggt
     8881 gttgtgctgg cgatgctccc cgatgctgac gtgctggcct ttaaatttgg cgtcgcctac
     8941 ggcaacgtgt tcggccatcg cggatttacc cactctttac ttttcgcatt cgtcctcccc
     9001 ctgttgtgcg tactcgcggg acgacgatgg tttcgagcgg ggcaggtgcg ctgctggctg
     9061 tttttaaccg tttcattgtt gtcgcacagc ctgctggatt cgataaccac gggtggtaaa
     9121 ggcgtcggat ggctgtggcc gtggtcggat gaacgtttct ttgcaccctg gcaggtgatt
     9181 aaagtcgcgc cgtttgcgct ttcaagctac atcacgccgt atgggcatca ggtgattgtt
     9241 tcggagctgc tatgggtgtg gctaccgggg ggcgtgctaa tagggatatt gggctggcac
     9301 agatggcgta taggggacga aaagcggact cgctaatgtc ggacggcgct acgcttaccc
     9361 gacctgtaga tttcatctca ggtaggccgg ataagacgcc ctgcgtctta tccggcaata
     9421 cggcaattac ttacgtcgcc aggtggtgcc ctgcgggcca tcttccagaa taatacccat
     9481 ttcagtgaga cgatcgcgcg ccgcgtccgc cgccgcccag tctttcgctt tacgggcatc
     9541 cagacgctgt tgaatcaagg cttcaatttc cgcaacttca ccgtcatccg cctgcgcgcc
     9601 gctttgcagg aaaacatccg gctcctgctc cagcagtccc agcacgccgg aaatcttccg
     9661 cagatgagac gccatcgcat tcgcggcggt catatcttcg cccttcagac ggttgacttc
     9721 acgcgccatg tcaaacagga cggagtaggc ttccggcgta ttgaaatcgt cattcatcgc
     9781 ctccacgaaa cgcgcttcaa acgcttcgcc gcccgccggg gccgctgatt tatccgttcc
     9841 acgcaatgca gtgtataacc gctccagcga ggcgcgcgcc tgcttgaggt tctcttcgct
     9901 gtagttcagt tggctacggt aatgcccgga catcaggaag tagcgcacgg tttccgcatc
     9961 gtagtatttc agcacgtcgc gcacggtaaa gaagttgccc agcgatttgg acatcttctc
    10021 gcgatccacc atcaccatac cggagtgcat ccagtagttg acgtattcgc cgtcatgcgc
    10081 gcaggtagac tgggcaatct cgttttcatg gtgcgggaac atcagatcgg aaccgccgcc
    10141 gtgaatatca aaatggttgc ccaactgctt acagttcatc gccgaacatt caatgtgcca
    10201 gcccggacgc ccttcgcccc acggcgacgg ccagctcggc tcgccctctt tcgacatttt
    10261 ccacagcacg aagtccatcg ggttacgctt cacgtcaacg acatccacgc gcgcgcccgc
    10321 ctgaagctgc tcaagatcct gacgggaaag ctgcccataa gtcggatcgg tcggtacatc
    10381 aaacatcaca tcgccgttat ccgccacata ggcgtgccct ttctcgatta aggtgcgggt
    10441 gagctcgata atttcctgaa tatggtgcgt cgcacgcggc tcgctgtccg gacgcagaat
    10501 attcagcgcg tcgaagtcct gatgcatttc cgcaatcatt ctgtcgacca gcgcgacaaa
    10561 actttcgccg ttttcattgg cgcgtttaat aattttatcg tcgatatcgg taatgttacg
    10621 cacatacttc agcttataac cgagaaaacg caaatagcgc gcgacaacgt caaaagcgac
    10681 aaacgtgcgt ccgtggccaa tgtggcagag atcgtaaacg gtgataccac acacgtacat
    10741 gccgacttcc ccggcatgaa tgggtttgaa ttcctctttt tggcgcgtca gtgtattaaa
    10801 aatttttaac atcgaagatt ccgtatagac gtgtgtgggt aattaggtgt gtataatact
    10861 cataattcaa ccttgaagca gcacactttg caaggtgatc gcagcttacg attatgctat
    10921 aacaagcccc tatatgtgcc ccattgcggg ctaaagcacc actctcttgg aacaggatgc
    10981 aaaaatggtt actttccaca ctaatcacgg cgatatcgta atcaaaacct ttgatgataa
    11041 agcgcctgaa acagttaaaa acttcctgga ctactgccgc gaaggttttt acaacaacac
    11101 cattttccac cgtgtgatta acggttttat gattcagggc ggcggctttg agccgggcat
    11161 gaaacagaaa gccaccaaag aggcgatcaa aaacgaagcc aacaatggtc tgaaaaatac
    11221 ccgtggtacg ctggcgatgg cgcgtactca ggcaccacat tcggctaccg cgcaattctt
    11281 catcaacgtg gcagacaacg acttcctgaa cttctccggc gaaagtctgc agggctgggg
    11341 ctactgcgtc tttgcggaag tcgtagaagg tatggacgtg gtagataaaa tcaaaggcgt
    11401 cgccactggc cgtagcggta tgcaccagga cgtaccaaaa gaagacgtca tcattgaaaa
    11461 cgtgaccgtc agcgagtaat cgtggcgaca ctgtttattg cagacttgca tctgcaaacg
    11521 gaagaaccgg cgatcgtcgc cggttttctg cgttttttag ccgtagaagc ccgtcaggcc
    11581 gacgcgctgt atattcttgg cgatctcttc gaggcttgga ttggcgacga cgaccccaac
    11641 ccgctacatc gtgaaatggc cgttgccatt aaatcgctgg ttgattccgg cgtcccttgc
    11701 ttctttattc atggtaatcg cgacttcctg attggcaaac gctttgcccg cgaaagcggc
    11761 atgacgctac taccgcagga aaaagtgctc gacctgtatg gccgcaatgt gttgattatg
    11821 cacggcgata cgctctgtac cgatgatgcc ggatatcagg cgtttcgcgc caaagtccat
    11881 aatccgtggg ttcaacggcc gttccttacc ctgccgctgt ttatccgccg ccgtatcgcc
    11941 gccagaatgc gcgccggcag taaagccgcc aacagcagca aatcgctgga tattatggac
    12001 gtcaatgcgc agaccgtcgt cgccgaaatg gaaaaacacc gcgtacagtg gctgattcac
    12061 ggtcacaccc accgcccggc ggtgcatgaa ctttccgcca acggccagcc cgcgttccgc
    12121 gtggtgttag gcgcatggca tcatgaaggt tcaatggtaa aagtcacgcc ggataacgtg
    12181 gagttaatcg ccttccccct gtaaatgttc gtcgaatcgt ccgttacggc gcacacgcaa
    12241 ccgttttcct tgcctgatta tcatgctatt ctctgacacc tcaaaagcag cgtgtcccgc
    12301 accacaggag ttttaagacg catgtcttcc cgcaataatc cggcgcgtgt cgccatcgtg
    12361 atggggtcca aaagcgactg ggctaccatg caattcgccg ccgaaatttt tgaaattctg
    12421 gatgtcccgc accatgtaga agtggtttcc gcccatcgca cccccgataa actgttcagc
    12481 ttcgccgaaa cggcggaaga gaacggatat caagtgatta ttgccggcgc gggcggcgcg
    12541 gcacacctgc cgggaatgat tgcggcaaaa acgctggtcc cggtactcgg cgtgccggta
    12601 caaagcgctg cgctcagcgg cgtggatagc ctctactcca tcgtgcagat gccgcgcggc
    12661 attccggtgg gtacgctggc gatcggtaaa gccggggcgg cgaacgccgc actgctggca
    12721 gcgcaaattt tggctacgca tgatagcgcg ctgcatcggc gcatcgccga ctggcgcaaa
    12781 gcacaaaccg atgaggttct ggaaaatccc gatccgcggg ggacgctatg aagcaagttt
    12841 gcgttctcgg caacgggcaa ctgggccgaa tgctgcgcca ggcgggcgaa ccgctgggta
    12901 tcgccgtctg gccggttggt ctggatgcag agcctaccgc cgtgccggta cagcagagcg
    12961 tcattaccgc agagattgag cgctggccgg aaaccgcgct tacccgcgag ctggcgcgcc
    13021 acccggcctt cgtcaatcgc gatgtatttc cgatcatcgc cgaccgtctg acacaaaaac
    13081 agcttttcga taaactggga ctcgcgaccg cgccgtggca gctgctgtcc agcgccgacg
    13141 agtggtccgg catctttgac cgtctgggcg aactggcgat tattaagcgt cgcgttggcg
    13201 gctacgacgg tcgcgggcag tggcgtctac gcgcggacga aaccgggcaa ctgccggatg
    13261 actgctatgg cgaatgtatt gttgagcgcg gtatccattt ttccggcgaa gtgtcgttag
    13321 tcggcgcgcg cgctcatgac ggcagtaccg tgttttaccc gctaacgcac aatttgcatc
    13381 aggacggcat cttgcggacc agcgtcgcgt tcccacaggc gaacgccgaa cagcaggagc
    13441 aggcggaatc gatgctgtca gcaattatgc aggcgttgaa ctacgtcggc gtaatggcga
    13501 tggaatgttt tatcacgccg gaaggcctgt taatcaatga actggcgccg cgcgtgcata
    13561 acagcggaca ctggacgcaa aatggcgcca gcatcagtca gtttgaattg catttgcgcg
    13621 cgattaccgg cttgccgttg cccgcgccgg tgattaacgc cccgtcggtg atgatcaatc
    13681 tgatcggcag cgagctgaat tacgactggc tgaagctgcc gctggtacat ctgcactggt
    13741 atgataaagc ggtacgtccg gggcgaaaag tcggccatct gaatctgacc gacagcgata
    13801 cgtcacgtct tagcgccacc ctggaagcgc tctctccgct cctgccgggc gaatacgcca
    13861 gcggcattat ctgggcgcaa agtaagctta aataaacagc gtgggcggcg cattctctgt
    13921 cgccgcccgt cgcgatcaca gacagatgca ggttcccgcc ctgcccgcca gggtatcgtc
    13981 aatacgcgac agcgcgccaa tccatgccgg ctttccgcac cgcttcacat acccgcttac
    14041 cgcggtcacc ttcggtccca tcgcgccatc ggctttggca aacggcgcca gctcatcggg
    14101 cgaagcctga cgaatagcgc gctgctgcgg cgttccccaa tgttcataca ccgcatccgc
    14161 atccgtcaaa atgatcagac catcggccgc tatctgctcc gccagcaatg ccgccgccag
    14221 gtctttatct atcaccgcct cgaccccttc gccctcgcca gcaacaggta ccccgccacc
    14281 gccgctgcaa atcaccacat ggccctcttt tagcaataac tcaatagcgg tgctttcgat
    14341 aatctgacgc ggcgccgggg aagcgacgac acggcgcaga tattttccat cacgtttcat
    14401 atgccagcca taagtcgctt ccagcgccat ttgctcttct ggcgaataaa cgggaccgat
    14461 aaacttttcc ggttcaagaa aagcaggatc gtccgccgat acctttattc gcgttaatac
    14521 cgcagtcacc ggcggcatat cgggttcaag cgccagacgc tgcgccagca tatagccgat
    14581 cattccctga ctttccgcca ccagcacatc cagcggataa ggctcaacgg ctttccaggc
    14641 aaggttctgt aaagccaaca ggccgacctg ggggccgttg ccatgtacta tcgccagccg
    14701 atacgagcgg gcaagtcgtg ccagcgcagg caccgcgtcg gcaatattgc gatattgatt
    14761 ctctgccgtt agcgcttctc cgcgctgcaa taatgcgttg ccgccaagag caactaccaa
    14821 cgttttcatt ccctatcctt ttactatttg ttgtccaagc cagaacccca gcagcgtatc
    14881 cgcgccagag gtgtgcccca gcgccagcag tccgtcaatc gccgtttctg tgcgagcatc
    14941 tcgtcgcagc gcatgaataa agtggagtaa aggcgacgcg aaatacccca tagccgcata
    15001 gcgtaaatag ctgacgctca cgagcgtcgt cgcccgatca aggctgccgg attgggcaaa
    15061 aaaattacgc ccggcgcgtt catctatggc gccaaaatac caggccgcca gcaacattcc
    15121 cgtcagcgtg tcctcatgac tgggcgttaa gcccggccct ttacccagcc atagccgcca
    15181 gtcagtcgca gcacctgcaa gcgctgactg aaagcagtga caaaactggc gaagttccgg
    15241 acatagaggc tgagctgcgg cgacggttaa cggcccaaac agtcccgtct cctcactacg
    15301 ctgcatgtac gtcgcgttaa ggcgcggcga cgcaagatag cgtggaaccc gcagcgaaca
    15361 gcgcctctcc ggctcgcata aaagaaactc gccaatctga ataccggcag cggttaactg
    15421 cggtttttcg ccatcggtga gcacatcacg caaggcgtca aaatcgccgc cgcgcagtat
    15481 ccaccctcct ggactgaagc cgctcccccg acggtgaagc gttaataact caccgctttt
    15541 cgccacaaaa ttaatagagc gacgccatac ccctgacatc tgccagggtt gccgataatc
    15601 cgccgattgt cggcttgcca taagaggatg gatacgtttc atgagacgct ctcttaactt
    15661 acgcccatgc tttccgccag cgcttccagc gcctgctcga aacaggccag cggcgcacgg
    15721 acggttcccg cgccaatctg accaattccc gcctctttat gcgcgatacc cgtgttaatc
    15781 agcggcgtaa ttccggtctc gaccacgcgg cggatatcca gtcccagaca ggccccctga
    15841 aaatcccagc cggggatttg tagctgcatg ttgcgttcga gataaatttc agccatctct
    15901 tcagaaacag atttcgccgc ttccattccc ccggcaccga caaaacgcgt tacgccaggc
    15961 gcggcaatca tcgctgcgcc gccaatacca aacgtttcag taatggcgct gtcgcccatg
    16021 tccgggttgg cctgatcctg cgaaaaaccg gtaaaaaata gcccctgcgg cgtattaaca
    16081 ggcgcggtga accaacggtc gcccagaccg ctaacccgaa tgccaaacat atcgccattg
    16141 cgggtcatcg ccgtcacaat actgccggcg cgaatctgcg cgcccgcgtc catggcggct
    16201 ttacagtagg ccatcgccag attaaggaag aattgatcgg tgacgctcag aaaatccatc
    16261 acttccgcta tctgctgctt atcgtgttgc agacgggcga tatgcggcgc caacgtgcgc
    16321 atcagcaatg cggaagaggc gatattgcgc tggtggaatt catctcccat cgtaatgccc
    16381 tgcgccatca tcgcggtcag gtcaagcccc cgctccagac gacccagcgc cgcgcttaat
    16441 accggcatca gcacatcgcg catccagcgc aaacgttgct gaacatcttc gccataggcg
    16501 ccgaaacgca tcactttgcc gatcccttcg ttgagattgc agtacgcgcg attgccgtcg
    16561 gtgatatttt ccacgaccag catcggcata ctggctgacg taataccgcc catcggcccc
    16621 acggcgttaa cgtgatggca gggaataaag ttgacctttc cctgctctaa cagcgcgagc
    16681 gcgctcattt catctttggc ccatccttca aacaggcatg cgccgataca ggcccctttc
    16741 atcgggccgg tcatctcttg ccagcgcatc ggcggcccgg catgaagaag cgttttcccc
    16801 tgattgagta cgctaattaa tgaagaagct ggcttcacat ccagccagtg cggacgtgcg
    16861 cgacgaattt gttcgatgac tgcagcgttg gcttgcgcca ctgatgtaaa tatgggaacc
    16921 ccttattgca aacgttctaa cagacgagcc agttttttat taccgccagc gacaggcgcc
    16981 cactggtagt gcaccacggg cataccggca gcctgtaaat ccagcgcgaa gctacgtaac
    17041 ccggcattaa tcaccgctac tgcttccagt aaccggggag ctgatggatg agtagaagag
    17101 agagtgggtc gaatcagttc cgcggccaac agagtggctt cgggaagaga atccactacc
    17161 gtgatgccgg catcttcgag cgcggcgatt tgttgcgagc ggcactgagg atcgcgttcc
    17221 gttccggtga cggttgcgat ggcgaacagc ggctggtcgc tggcgcgtgc ggcgcatgcc
    17281 ttctgccagg cctgaatcag cgatgcggcg ggatcggcgg tcgcgccaaa accaataacg
    17341 acgtccacta ataacacgcg tacctgcggt tgtgcgccaa gcccggcgat aagctgatta
    17401 cgtaacgccg ggtcaatcat cggatgtggt cgcccaacgg tataaaagtc atcgcccaga
    17461 tcgataatct ggtggccgtc agcgtcaagc atcatgccat ggtgatgttc cgtatccgtc
    17521 gcgacgccca gatagccggc cagcagtccc gccgcttccg ccgccagcgt tccgccggta
    17581 tagagaccac gaatcacgcc gcctgttgaa accatttctt tacgctgcga cgtcacgcga
    17641 gacaataaac atgccagtcg ggcagcttca tccagcgtcg aggcaaacca gacgttttcc
    17701 tcacgcgcaa cgggagagga aaaccctaag aacagcgcta caacgggttt cccggtggct
    17761 ttcatcgccg cgataatatg ctgacgaacc gcatcagcag gcggtttgga gacaaaggcc
    17821 agcacctggc tcttttcatc cgcgctgagt atgtccagtg ccgttagcgc gctgatcccg
    17881 ccgacctcgg cgctcaaatc gcgtccgcca agcccgatgg catgggtaat cccttccccc
    17941 gccagcgcaa tctgtgaaca gagctcctga ataccggtgc cggaagcgcc aatcaccccg
    18001 atgttgccct ctggcatgac gttagcgaaa gccagcggcg tattggcgat catagcggtg
    18061 ccgcaatctg gccccatgac cagcagtccc ttatcacgcg cccggcgttt tagtctgatt
    18121 tcgtcgtcca gcgtgacatt atcggagaag atcatcacgt tcaacgaacg agccagcgcc
    18181 tgctccgcca gttccgccgc atattcgccg gccaccgata ccagcgccag attcgcctct
    18241 ggcagtttct gacaggcgct ttcccagcgt ctgacctgga ttaacgactg gctgccgctg
    18301 cttccctgcg ccaactgctg caatgcttct tcgagctgtc gcacaatcac ctgcgtaatg
    18361 ccgtcatcta ccgcttcggt acgaatcgcc acgcaaatgt cattgggcgt agcgccatga
    18421 aaatcgtcat gccagaaacc ggtagtttcc agcagcgact tattcgcagg cgtacccatc
    18481 attaccgata catcatcaac attttcggac tcactcagct ttcgagaaat aatcattaag
    18541 ctgacagagt cctgaaaaca ccctttttta ataaaggcgt ggatcataac aactccttaa
    18601 taattgcacc cattgcaatt gcacgagcag tgttaat
//
LOCUS       DAJVSD010000066        18340 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.066, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000066 DAJVSD010000000
VERSION     DAJVSD010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 18340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18340
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.066"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            12..872
                     /locus_tag="OQP62_001892"
     CDS             12..872
                     /locus_tag="OQP62_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012218841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HCS1721463.1"
                     /translation="MSLKTIKYFSTLIVAVVAVLAAWWLWNYYMQSPWTRDGKIRAEQ
                     VSVTPQVSGSITQLNIKDNQFVNAGDVLFVIDKTPFHIAELNAQAQLAKAQSDLAKAN
                     NEADRRRHLSRNYISAEDLDSANLNVKAMQASVDVALATLKQAQWQLSQTEVKAPVSG
                     WVTNLSTRTGDYASTGKPLFALVDSHSFYVMGYFEETKLRHIREGEPALITLYSGNVK
                     LQGHVGSIGRAIYDQSVESDSGLVPDIKPNVPWVRLAQRVPVRIEFDALPQDITLVSG
                     TTCSVAIGQR"
     gene            872..2911
                     /locus_tag="OQP62_001893"
     CDS             872..2911
                     /locus_tag="OQP62_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HCS1721464.1"
                     /translation="MKLSLPALRNTPWFKATSGQWRYALRNTIAMCLALTFAYYLNLD
                     EPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGATAALIIAGHTLNEPWLFLFSMAA
                     WIGFCTWACAHFTNNAAYAFQLSGYTAAIIAFPMVNIVEITQLWDIAQARVCEVIVGI
                     LCGGMMMMILPSTSDGTALLTALKNMHARLLEHASLLWQPETTDAIRSAHEGVIGQIL
                     TMNLLRIQAFWSHYRFRRQNALLNALLHQQLRLTSVISSLRRMLLNWPTPPENSREVI
                     EQLLAELAKPRADSYTVARIIAPLCPQDEQDYRHLAFWQRLRYFCQLYLRSSRQLYLI
                     ESGAPVDQIHIRRTPGLARHTDNAEAIWSGVRTFCTLTVIGAWSIGVQWESGPGALTL
                     AAISCVLYSIVATPFKSLSLLMRTLVLLSLFSFVVKFGLMVQITDLWQFLLFLFPLFV
                     TMQLLKLQMPKLAGLWGQLIVFMGSFIAVTNPPVYDFADFLNDNTAKIVGVAISWLAF
                     AILRPGSDAVKSRRHIRALRRDFVDQLSRHPSHSESEFESLTYHHVSQLSNSQDALAR
                     RWLLRWGVVLLNCSHVVWQLRAWESRSDPLSRVRDICISLLRDVMSERDVQQRPLAVT
                     LQELQRICDTLAHHHQPAAHELAAIIWRLHCSLSQLEQAPAQGTLSPGYLMTPQA"
     gene            complement(2887..3408)
                     /gene="sodC"
                     /locus_tag="OQP62_001894"
     CDS             complement(2887..3408)
                     /gene="sodC"
                     /locus_tag="OQP62_001894"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Cu-Zn] SodC2"
                     /protein_id="HCS1721465.1"
                     /translation="MKRLSLAMVTLLACAGAQAASEKVEMNLVTAQGVGQSIGTVVID
                     ETEGGLKFTPHLKALPPGEHGFHIHAKGSCQPAIKDGKAVAAEAAGGHLDPQNTGKHE
                     GPEGQGHLGDLPVLVVNNDGIATEPVTAPRLKSLDEVKDKALMIHVGGDNMSDQPKPL
                     GGGGTRYACGVIK"
     gene            complement(3488..4384)
                     /locus_tag="OQP62_001895"
     CDS             complement(3488..4384)
                     /locus_tag="OQP62_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase family oxidoreductase"
                     /protein_id="HCS1721466.1"
                     /translation="MVQRVTIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDL
                     GVTTVDHADIYGGYQCEAAFGEALTLAPHLREKLQIVTKCGIATTARAENRLGHYITD
                     RRHIILSAEQSLKDLATDYLDMLLIHRPDPLMDADDVAEAFQHLHQSGKVRHFGVSNF
                     TPAQFTLLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRIRPMAWSCLGGGRLF
                     NDEAYQPLRQELSVIAQELNASSIEQVVYAWILRLPSQPLPIIGSGKIERVRAALEAE
                     TLSLSRQQWFRIRKAALGYDVP"
     gene            complement(4435..4674)
                     /locus_tag="OQP62_001896"
     CDS             complement(4435..4674)
                     /locus_tag="OQP62_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1289 domain-containing protein"
                     /protein_id="HCS1721467.1"
                     /translation="MAEQLEFFPVASPCRGICQSDERGFCRGCMRSRDERFNWQKMSD
                     AEKQNVLRLCRQRFLRKIRANKPLPSEDPQQPSLF"
     gene            4777..5376
                     /locus_tag="OQP62_001897"
     CDS             4777..5376
                     /locus_tag="OQP62_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HCS1721468.1"
                     /translation="MNKQTEHDTREHLLATGEQLCMQRGFTGMGLSELLKTAQVPKGS
                     FYHYFRSKEAFGVAMLERHYACYHQRLTAHFTSGPGNHRDRLLAWYQETLKQFCQQGA
                     ISGCLTVKLSAEVCDLSEDMRSTMDKGAQEIMALLARALEDGRNSHCLHFTGQPLPQA
                     QVLYALWLGANLQAKISRSAAPLENALAHVKTIIATPEQ"
     gene            5435..6532
                     /locus_tag="OQP62_001898"
     CDS             5435..6532
                     /locus_tag="OQP62_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkene reductase"
                     /protein_id="HCS1721469.1"
                     /translation="MSSAKLFTPLKVGAITATNRVFMAPLTRLRSIEPGDIPTPLMAE
                     YYRQRASAGLIISEATQISAQAKGYAGAPGLHSDEQIAAWKKITQGVHAQGGHMAVQL
                     WHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALDTHEIPGI
                     VNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNHRTDRYGGSVENRARLVLEV
                     VDAGIKEWGADRIGIRLSPVGTFQNVDNGPNEEADALYLIEALGKRGIAYLHMSEPDW
                     AGGEPYSDAFREKVRARFHGPIIGAGAYTPEKAEDLIEKGLIDAVAFGRDYIANPDLV
                     ARLQRKAELNPQRPESFYGGGAEGYTDYPTL"
     gene            6601..7008
                     /gene="gloA"
                     /locus_tag="OQP62_001899"
     CDS             6601..7008
                     /gene="gloA"
                     /locus_tag="OQP62_001899"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008500591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HCS1721470.1"
                     /translation="MRLLHTMLRVGDLQRSIAFYTNVLGMKLLRTSENPEYKYSLAFV
                     GYGPETEEAVIELTYNWGVESYDMGNAYGHIALSVDNAAEACERIRQNGGNVTREAGP
                     VKGGSTIIAFVEDPDGYKIELIEAKDAGRGLGN"
     gene            7109..7756
                     /gene="rnt"
                     /locus_tag="OQP62_001900"
     CDS             7109..7756
                     /gene="rnt"
                     /locus_tag="OQP62_001900"
                     /EC_number="3.1.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HCS1721471.1"
                     /translation="MSDNAQLSGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITL
                     KMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNGIDPSNPLRGAVSEYEALHAIFKM
                     VRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLKRNPFHPFVTFDTAALSGLALG
                     QTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVNRWKRLGGWPLPLPTDK"
     gene            complement(7834..8181)
                     /gene="grxD"
                     /locus_tag="OQP62_001901"
     CDS             complement(7834..8181)
                     /gene="grxD"
                     /locus_tag="OQP62_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monothiol glutaredoxin 4"
                     /protein_id="HCS1721472.1"
                     /translation="MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACG
                     ERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE
                     TAAKYKTQEPDAE"
     gene            8516..9337
                     /locus_tag="OQP62_001902"
     CDS             8516..9337
                     /locus_tag="OQP62_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS1721473.1"
                     /translation="MARINKISITLCALLFTTLPFTPMAHASRQAKATPAVSHVTKTA
                     DKKKSTTKKISKTSKKNVKKTSKTSRSSSASTPKRTTAATKSRHTTHRRNRTAPTSIA
                     ALDVTEKCTTRKGRKPHCVKGKGTLPVSIADAHRAKVQKATKTAMSKLMNQIGKPYHW
                     GGASPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRT
                     QGRGTADHVGVYVGNGKFIQSPRSGQEIKITSLNEEYWQRHYVGARRVMTPKTIR"
     gene            9464..10045
                     /gene="sodB"
                     /locus_tag="OQP62_001903"
     CDS             9464..10045
                     /gene="sodB"
                     /locus_tag="OQP62_001903"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HCS1721474.1"
                     /translation="MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIK
                     GTAFEGKSLEEIVRTSEGGIFNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAIAASFG
                     SFAEFKAQFTDAAIKNFGSGWTWLVKSADGKLAIVSTSNAGTPLTTDATPLLTVDVWE
                     HAYYIDYRNARPNYLEHFWALVNWEFVAKNLAA"
     gene            complement(10128..10217)
                     /locus_tag="OQP62_001904"
     CDS             complement(10128..10217)
                     /locus_tag="OQP62_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnhF family membrane protein"
                     /protein_id="HCS1721475.1"
                     /translation="MSTDLKFSLITTLIVLGVIVAGGLTAALH"
     gene            10513..11538
                     /gene="purR"
                     /locus_tag="OQP62_001905"
     CDS             10513..11538
                     /gene="purR"
                     /locus_tag="OQP62_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor PurR"
                     /protein_id="HCS1721476.1"
                     /translation="MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELH
                     YSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLE
                     KQRAYLSMMAQKRVDGLLVMCSEYPEPLLSMLEEYRHIPMVVMDWGEAKADFTDTVID
                     NAFAGGYMAGRYLVERGHRDIGVIPGPLERNTGAGRLAGFMKAMEEALINVPDNWIVQ
                     GDFEPESGYHAMQQILSQSHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSVIGYDN
                     VRNARFFTPALTTIHQPKDSLGETAFNMLLDRIVNKREESQSIEVHPRLVERRSVADG
                     PFRDYRR"
     gene            complement(11535..12467)
                     /locus_tag="OQP62_001906"
     CDS             complement(11535..12467)
                     /locus_tag="OQP62_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1721477.1"
                     /translation="MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWL
                     AVPLFVRRHRDVELTPAGVWFLKEGRSVIKKMQITRQQCQQIANGWRGQLAIAVDNIV
                     RPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATQAIPVGGRYAF
                     RDMGTLSWSCVVASDHPLASMPGPLSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKR
                     VVVPDWESSATCLSAGLCVGMVPTHFARQWIDSGKWVALTLENPFPDAACCVTWQQNE
                     ASPALAWLLDYLGDSETLNREWLREPEEAPDSGD"
     gene            12580..13785
                     /locus_tag="OQP62_001907"
     CDS             12580..13785
                     /locus_tag="OQP62_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family multidrug efflux MFS
                     transporter"
                     /protein_id="HCS1721478.1"
                     /translation="MQPGKGFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPAAAVS
                     ASLSLFLAGFAVAQLLWGPLSDRYGRKPILLLGLSIFALGSLGMLWVESAAALLTLRF
                     VQAVGVCAATVIWQALVTDYYPSQKINRIFATIMPLVGLSPALAPLLGSWILTHFSWQ
                     VIFATLFVITLLLMLPALRLKPSVKARTEGQDKLTFATLLRSKTYRGNVLIYAACSAS
                     FFAWLTGSPFILSAMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGYQLLPWLLG
                     LYALSVIATWGAGLLNNASLVEILIPFCVMAIANGAIYPIVVAQALRPFPQATGRAAA
                     LQNTLQLGLCFLASLVVSWLISTPLLTTTSVMLSTVVLAALGYKMQSHADCAETGFPH
                     ANVAHDKSH"
     gene            14074..15222
                     /gene="cfa"
                     /locus_tag="OQP62_001908"
     CDS             14074..15222
                     /gene="cfa"
                     /locus_tag="OQP62_001908"
                     /EC_number="2.1.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane fatty acyl phospholipid synthase"
                     /protein_id="HCS1721479.1"
                     /translation="MSSSCIEEVSVPDDNWYRIANELLSRADITINGSAPSDIRVKNP
                     DFFKRVLQEGSLGLGESYMDGWWECERLDIFFSKVLRAGLENQLPHHVKDTLRILGAR
                     LINLQSKKRAWIVGKEHYDLGNDLFSRMLDPYMQYSCAYWKDADTLEAAQQAKLKLIC
                     EKLQLQPGMRVLDIGCGWGGLSQYMATHYGVSVVGVTISAEQQKMAQTRCEGLDVSIL
                     LEDYRDLNDQFDRIVSVGMFEHVGPKNYNTYFEVVDRNLKPDGLFLLHTIGSKKTDHN
                     VDPWINKYIFPNGCLPSVRQIAEASESHFVMEDWHNFGADYDTTLMAWHERFINAWPE
                     IAGNYNERFKRMFSYYLNACAGAFRARDIQLWQVVFTRGVENGLRVPR"
     gene            complement(15264..15905)
                     /locus_tag="OQP62_001909"
     CDS             complement(15264..15905)
                     /locus_tag="OQP62_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HCS1721480.1"
                     /translation="MFTGIVQGTAKLVSIDEKPNFRTHVVTLPDYMLEGLETGASVAH
                     NGCCLTVTEINGNQISFDLMKETLRITNLGALRVGDEVNVERAAKFSDEIGGHLMSGH
                     IITTAEIAKILTSENNHQVWFKVQDASLMKYILYKGFIGVDGISLTVGEVTPTRFCVH
                     LIPETLERTTLGRKKLGERVNIEIDPQTQAVVDTVERVLATRENVVRNQADIG"
     gene            16122..17495
                     /gene="mdtK"
                     /locus_tag="OQP62_001910"
     CDS             16122..17495
                     /gene="mdtK"
                     /locus_tag="OQP62_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460388.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MATE transporter MdtK"
                     /protein_id="HCS1721481.1"
                     /translation="MQKYTSEARQLLALAIPVILAQVAQTAMGFVDTVMAGGYSATDM
                     AAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLV
                     MIVLWNAGYIIRSMHNIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPG
                     MVMGFLGLLVNIPVNYIFIYGHFGMPELGGIGCGVATAAVYWVMFIAMLSYIKHARSM
                     RDIRNEKGFGKPDSVVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQI
                     ALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLGVGICMAVVTAIFTV
                     TLRKHIALLYNDNPEVVALAAQLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFFITF
                     TAYWVLGLPSGYILALTDLVVDRMGPAGFWMGFIIGLTSAAVLMMLRMRYLQRQPSAI
                     ILQRAAR"
     gene            17647..17723
                     /locus_tag="OQP62_001911"
     tRNA            17647..17723
                     /locus_tag="OQP62_001911"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:17681..17683,aa:Val,seq:gac)
     gene            17734..17810
                     /locus_tag="OQP62_001912"
     tRNA            17734..17810
                     /locus_tag="OQP62_001912"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:17768..17770,aa:Val,seq:gac)
     gene            complement(17968..>18340)
                     /gene="ssaU"
                     /locus_tag="OQP62_001913"
     CDS             complement(17968..>18340)
                     /gene="ssaU"
                     /locus_tag="OQP62_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SPI-2 type III secretion system apparatus
                     protein SsaU"
                     /protein_id="HCS1721482.1"
                     /translation="DPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYH
                     PTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFE
                     PVAALLRMVMKIDYAHSTETP"
BASE COUNT         4219 a         4866 c         4682 g         4573 t
ORIGIN      
        1 gtgtggtaaa tatgtcgtta aaaacaataa aatatttttc tactctcatt gtcgccgtcg
       61 tcgccgttct ggccgcgtgg tggttatgga attactatat gcagtcaccg tggacgcgcg
      121 atggtaaaat ccgcgcggaa caggtcagcg taacgccaca ggtttctggc agcattaccc
      181 aactcaatat caaagataat cagttcgtca acgctgggga cgttctcttt gtcattgata
      241 aaacgccctt ccatattgca gaacttaacg cgcaggcaca gttggccaaa gcgcagtccg
      301 atctggcaaa agcgaataat gaagccgatc gacgtcgaca tttatcgcgt aactacatct
      361 ctgctgaaga tctggatagc gccaatctga atgttaaagc gatgcaggcc agcgtagatg
      421 tcgcactggc aacgttaaaa caggcgcagt ggcagcttag ccagacggaa gtaaaagcgc
      481 cggtatccgg ctgggtgacc aacctttcca cgcgtaccgg tgattatgct agcaccggta
      541 agccactttt cgccctggta gatagccatt cattttatgt aatgggatat ttcgaagaaa
      601 ccaaactacg ccatatccgc gaaggtgagc ctgcattaat aacactgtat agtggcaatg
      661 ttaagttaca gggtcacgtt ggcagtatcg ggcgcgctat ttacgaccaa agcgtggaaa
      721 gtgactccgg tttagtgccc gatatcaaac ccaacgtacc gtgggtacgt ctggcgcaac
      781 gcgtaccggt acgtatcgaa tttgacgctt tgccgcagga tatcacgctc gtctccggca
      841 ctacctgcag cgtagccatt ggacagcggt aatgaaactc tccctgccgg ccctgcgaaa
      901 tacgccctgg tttaaagcga cctccggcca gtggcgttac gcgttgcgca ataccattgc
      961 catgtgtctc gcgctgacat tcgcttatta tctcaatctg gatgagccct actgggcgat
     1021 gacttcggcc gcagtggtga gctttccgac cgtaggcggc gtaatcagta aaagtctggg
     1081 gcgtattgcc gggagtttac tcggcgcgac cgccgcgttg attattgccg gccatacgct
     1141 gaatgaaccc tggttgttct tatttagcat ggccgcctgg atcggttttt gtacctgggc
     1201 ctgcgcgcat tttaccaata atgccgctta tgctttccag ttgtccggct acacggcggc
     1261 gatcatcgcg ttcccgatgg ttaatattgt agaaatcacg cagttgtggg atatcgccca
     1321 ggcacgtgta tgtgaagtta tcgtcggcat cctctgtggc ggcatgatga tgatgatcct
     1381 acccagcaca tcggatggca ctgccctgct caccgcgttg aaaaacatgc atgcgcgctt
     1441 gctggaacat gccagtctac tgtggcagcc ggagactacc gacgctatcc gctccgcgca
     1501 tgagggggtc attgggcaaa tcctgaccat gaacctgctg cgtattcagg ccttctggag
     1561 tcactaccgt tttcgccgtc agaatgcatt gctaaatgca ttgttacacc agcaattacg
     1621 gctaaccagc gtgatctcca gtctgcgtag aatgctttta aactggccga cgccgccgga
     1681 aaacagccgc gaagtcattg aacaactctt agctgagttg gcaaaaccgc gcgcggacag
     1741 ctacaccgtg gcgcggatta ttgcgccgct atgcccgcag gatgaacagg attatcgtca
     1801 cctcgcgttc tggcagcgat tacgctattt ttgccagcta tatctgcgca gcagccgtca
     1861 attatatctg atcgaaagcg gcgcgccggt ggatcaaatc catatccgcc gcactcccgg
     1921 ccttgcgcgg catacggata acgcagaggc catctggagc ggcgtgcgta ccttttgcac
     1981 gctcacggtg attggcgcct ggagtattgg cgtgcaatgg gaatccgggc ccggcgcatt
     2041 aaccctggcg gcgatcagtt gcgtcctcta ctccatcgtc gccacgccgt ttaagtcgct
     2101 ttccttattg atgcgtactt tagtgctgct gtccttattc agcttcgtgg tgaaatttgg
     2161 cctgatggtg caaatcaccg atctgtggca attcttgctt ttcctttttc cgctgttcgt
     2221 cacgatgcaa ctgcttaaac tgcagatgcc taagctggcg ggactgtggg ggcagcttat
     2281 cgtttttatg ggctcattca tcgccgtgac caatccaccg gtgtacgact tcgccgactt
     2341 ccttaacgat aataccgcca agatcgtcgg cgtcgcgatt tcctggctgg cgtttgcgat
     2401 tttgcgcccc ggttccgatg ccgtaaaaag ccgccgccat atccgcgcgc tacgccggga
     2461 tttcgtcgat cagcttagcc gtcacccttc ccatagcgaa agcgagtttg aatcgctgac
     2521 ctatcatcac gtcagtcagc tcagcaatag tcaggatgcg ctggcgcgcc ggtggttatt
     2581 acgttgggga gtggtgctgc tgaactgctc gcatgtggtg tggcagctgc gcgcctggga
     2641 gtcgcgttcc gatccgcttt cccgggtgcg ggatatttgt atatccctgc tgcgcgatgt
     2701 gatgagcgag cgcgacgtgc agcaacgccc gcttgccgtc acgctacagg aactacagcg
     2761 tatctgcgac acgctcgcac atcatcatca acccgccgcg catgagctgg cggcgattat
     2821 ctggcgttta cactgttcgc tgtcgcagct ggaacaggct ccagcgcagg gaacactgtc
     2881 tccgggttat ttaatgacgc cgcaggcgta acgcgttccg ccgccgccga gcggtttcgg
     2941 ctgatcggac atgttatcgc cgcccacatg gatcatgagc gctttatctt tcacttcatc
     3001 aagagacttc agacgcggcg cagtaaccgg ttcggtggcg ataccatcat tattaacgac
     3061 taacaccggg aggtcgccca gatgcccctg accttccggt ccttcatgct taccggtatt
     3121 ttgtgggtcc agatgaccac cagcggcttc tgcggcaacc gctttgccgt ctttaatcgc
     3181 gggctggcag ctacctttgg catgaatgtg aaaaccatgc tcgcccggcg gcaacgcttt
     3241 aaggtgtggg gtaaatttta agccgccttc ggtttcatcg atgacgacgg tgccgataga
     3301 ctgtcctacg ccttgcgccg tcaccagatt catctctact ttctcgctgg cagcctgcgc
     3361 acccgcacag gccagcagcg tcaccatcgc taaacttaat cgcttcataa aacctccgtt
     3421 acatgtggtc gcctgttaag tgtaaaccac tggcgaaaac atgaacggaa agtcaacgag
     3481 ttggcgatta cggcacgtca taacccagtg ccgccttgcg gattcggaac cactgttgac
     3541 gcgacaatga cagcgtttcc gcttctagtg cggcgcgtac gcgttcgatt ttacccgagc
     3601 caataatcgg cagcggctgc gacggcaaac gtaaaatcca ggcatagacc acctgttcaa
     3661 tagaactagc gttgagttct tgcgcgataa cggaaagttc ctggcgcaac ggctgataag
     3721 cctcatcatt aaacagacga ccgccgccaa gacatgacca ggccatcgga cgaatacgca
     3781 gttgctgtaa ttgatctaat gtgccgtcca gcaacaaagg ctggtgaacc ggcgagatct
     3841 ccacctggtt ggtcgccagg gtgaacggca ggcgcgattg cagcaacgta aattgcgctg
     3901 gcgtaaaatt agaaacgcca aaatggcgca ctttgccgct ttgatgtaga tgttgaaacg
     3961 cctcggcgac gtcatccgca tccattaacg gatcgggacg gtgaattaac aacatatcca
     4021 gataatctgt cgccagatct tttaatgact gttcggcgct cagaataata tggcggcgat
     4081 cggtaatata atgaccgagc ctattttccg ctctggcggt ggtcgcaata ccacatttgg
     4141 taacgatttg cagtttttcc cgcaaatgcg gcgccagcgt tagcgcctcg ccaaacgccg
     4201 cttcgcactg ataaccgcca taaatgtccg catggtcaac ggtagtgacg cccaaatcca
     4261 gatgttcttc gataaaactc actaactgac gcgcggacat attccagtcc atcaaacgcc
     4321 agtaacccat gacaaaacgc gaaaattccg ggccttgtgg agcgatggtg acacgctgaa
     4381 ccataacaga ttcctcatag agaataatga ggttgagtat acgcaattcc gcgtttaaaa
     4441 gagtgaaggt tgttgaggat cttccgatgg gagaggctta tttgcgcgta ttttacgcaa
     4501 gaaacgctgg cgacaaagcc gcagtacatt ttgtttctcg gcatcgctca ttttttgcca
     4561 gttaaaccgt tcgtcgcggc tgcgcataca tccccgacaa aagccacgct catcagactg
     4621 gcagataccg cgacatgggc ttgctacagg aaaaaactcc aactgctcgg ccacatcccc
     4681 tcctcaacgt ttggcgctta tgactattga agacgctaac tgacattatg gcaactctgc
     4741 ttgcagtaga ccgactggtc tactatactg cctgtcatga ataagcaaac cgaacatgat
     4801 acccgcgaac atctgctggc caccggcgag cagctttgta tgcaacgggg ttttaccggc
     4861 atggggctta gcgagttgct caaaaccgcc caggtaccta aagggtcgtt ttatcactac
     4921 tttcgctcga aagaagcctt cggcgtcgcc atgcttgagc gacattacgc ctgctatcat
     4981 cagcgtctta cggcgcactt cacctccggt cccggtaatc atcgcgatcg tcttctcgcc
     5041 tggtatcagg aaacgttaaa gcagttttgc cagcaaggcg ccatcagcgg ttgcctgacg
     5101 gtgaaactgt cagcggaagt ctgcgatctg tcggaggata tgcgctctac gatggataaa
     5161 ggggcgcagg agatcatggc actgcttgca cgcgcgctgg aagatggccg taatagccac
     5221 tgtttacatt tcaccggcca gccgttgcca caggcgcagg tactttatgc cctgtggctg
     5281 ggcgccaatt tgcaggccaa aatatcccgt agcgccgcgc cgctggaaaa tgcgttggcg
     5341 catgttaaga ccatcattgc aacgcctgag cagtaacggg cgtttttatt tcctttatta
     5401 caagacgacc ggtctactta tatcaggagc cactatgtca tcagcaaaac tgtttacccc
     5461 cctcaaggtg ggtgccatca cggcgacaaa tcgcgtattt atggcgcctt tgacgcgttt
     5521 gcggagtatt gaaccgggcg acattcctac gccgttaatg gcggaatatt accgtcaacg
     5581 cgccagcgcc ggattgatca tcagcgaagc cacacaaatc tccgcgcagg cgaaaggcta
     5641 tgccggcgca ccgggattac acagcgatga gcagatcgcc gcctggaaaa aaatcactca
     5701 gggagtccat gcccagggcg gccatatggc ggtgcaactg tggcatacgg gccgtatttc
     5761 acacgccagc ctgcaaccag gcggacaagc gcccgtcgcg ccatccgcta tcaatgcggg
     5821 aacccgcacc tctttgcgtg acgaaaacgg ccaggccatc cgcgtagaaa cttccacgcc
     5881 gcgcgcgctg gatactcatg agatccccgg gatcgtcaac gatttccgcc aggctatcgc
     5941 caatgcccga gaggcaggct tcgatctggt ggagctgcac tccgcgcacg gttatctgct
     6001 gcaccagttc ctctcaccgt cttctaatca ccgtaccgat cggtacggcg gcagcgtaga
     6061 gaatcgcgcc cgtctggtgc tggaggtggt tgatgccggc attaaggaat ggggcgcgga
     6121 ccgtatcggc atccgccttt ctcctgtcgg cactttccag aatgtcgata acggcccgaa
     6181 tgaagaagct gacgcccttt atctgattga agcgttaggc aaacgcggca tcgcttatct
     6241 gcatatgtct gaaccagact gggcgggcgg cgaaccgtac agcgacgcgt tccgtgaaaa
     6301 agtgcgcgcg cgtttccacg gtcccatcat cggcgctggc gcctatacgc cagaaaaagc
     6361 ggaagatctg atcgaaaaag ggctgattga cgccgtggcg tttggtcgcg attacatcgc
     6421 taacccggat ctggtggcgc gtctgcaacg taaagcggaa cttaatccac agcgtcccga
     6481 aagtttttat ggcggcggcg cggaaggcta cactgactac cctactctgt aatttcattg
     6541 atagcggcct cacatcgccg ctatactttg aatatcttga ctattttaag gacaacgaaa
     6601 atgcgtttat tgcatactat gctgcgcgtc ggcgatttgc agcgttccat cgctttttac
     6661 actaacgttc tgggcatgaa attgctgcgt accagtgaga atccggaata caaatactcg
     6721 ctggcctttg tgggatatgg tccggaaacg gaagaagcgg tcatcgaact aacctataac
     6781 tggggcgttg agagctacga catgggcaat gcgtatgggc acatcgcgct gagcgttgac
     6841 aatgctgctg aagcctgtga acgcattcgt cagaacggcg gcaacgtgac ccgtgaagcg
     6901 gggccggtaa aaggcggttc gaccatcatc gccttcgttg aagatccgga tggctataaa
     6961 atcgaattga ttgaagctaa agacgcaggc cgcggtctgg gtaactgatc ccccgccggg
     7021 cgcaggtcac tgcgcccgtt gttttactgc atcccggcgt aaaatttgcc ataatacgcg
     7081 ctgcattttt tcgtattaag agactcagat gtccgataac gctcaacttt ccggtctgtg
     7141 cgaccgtttt cgtggttttt atcctgtcgt catcgacgtt gaaactgcag gatttaacgc
     7201 taaaaccgat gcgctgctcg aaatcgccgc catcacgctg aaaatggatg aacaaggctg
     7261 gttgatgccg gacatgacgc tgcatttcca tgtagagccg ttcgctggag ccaacttaca
     7321 gccggaagcg cttgcgttta acggtatcga tccctctaac ccgctacgcg gcgcggtgag
     7381 tgaatatgag gcgctacacg ctattttcaa aatggtacgt aaaggtatca aagacagcgg
     7441 ttgtagccgc gccattatgg tcgcgcataa cgccactttt gatcacagtt ttatgatggc
     7501 cgccgcagag cgcgcctcgc tgaaacgtaa cccgtttcat ccgttcgtca cctttgatac
     7561 tgcggcattg agcggactgg cgctgggaca aacggtgtta tcaaaagcgt gcctggcggc
     7621 aggtatggag tttgacggtg aaaaagccca ttccgctttg tatgataccg agcggacagc
     7681 ggtgctgttt tgtgaaatcg tcaatcgctg gaagcgcctg ggcggctggc cgttaccttt
     7741 gccgacggac aaataacgag gctaacaacg ccgctcttgc tcacgatggc ggtaaaaaag
     7801 cgacctttac aggtcgcttt cccctttcac agattactct gcgtccggct cctgagtttt
     7861 atattttgcc gcagtttctt taataagctg ctgcagctcg ccacgctgat acatttcaat
     7921 cacaatatca cacccgccga ccagctcgcc gtccacccac agttgtggga atgtcggcca
     7981 gttggcgtat ttcggtaatt cagcgcgaat atccgggttt tgcaggatat caacataggc
     8041 aaaacgttcc ccgcaggctg aaagcgcctg aacggcctgc gcagagaaac cacagcttgg
     8101 cagtttcggt gaacctttca tatacaggag aatcgggttt tcagcgatct ggcgctgaat
     8161 tttttcgata gtggtgctca ttgtctcgct tccttaaact acttttacga ccgaagcctg
     8221 tcattgtaac gggtcaggct ggcaacggaa aataacattt tcatcatgcc ttattatttt
     8281 accgtctgcg ggaataagtt gtatacaaaa tatcttttaa gcgggttgcc gcgcagtgat
     8341 ttgtagataa cgcgttcgtg tttagcatta attgctattt ttttacatct gttaacgaaa
     8401 catagcttca gaaaccaaaa gcaattacca atctgtgctt ttgtagatta gaattatcag
     8461 gttttgtaaa tcatacgcag gcatgaatcg cctgccttta acagaggatt gctcagtggc
     8521 gcggataaac aaaatctcga tcacgctctg tgctttactt tttactactc tcccctttac
     8581 gccaatggcc catgcttcca ggcaagccaa agcgacgcct gctgtttctc atgtcacgaa
     8641 aacggcagat aaaaagaaaa gcacaactaa aaagatcagt aaaaccagca aaaaaaacgt
     8701 aaaaaaaacc tcaaaaacca gccgttcttc ttccgcttct acgccaaaac gtaccaccgc
     8761 cgccacaaaa tctcgtcata cgacgcatcg tcgtaacaga accgcgccca cgtcaatcgc
     8821 cgccctcgac gtaacggaaa aatgcacgac gcgtaaaggc cgtaagccgc actgcgtgaa
     8881 ggggaaagga acattgccgg tctctattgc cgatgcgcat cgtgcaaaag tacaaaaggc
     8941 gacgaaaacc gcgatgtcca agctcatgaa tcagattggt aaaccgtatc actggggagg
     9001 cgcatcgccg cgcaccggtt ttgattgcag cggtctggtt tattatgcct ataaagattt
     9061 agtgaagatc cgtatccccc gaacggcgaa tgagatgtat cacctgcgtg acgcggcccc
     9121 cattgagcgt agcgagttga aaaacggcga tctggtgttc ttccgtacac aggggcgcgg
     9181 caccgctgat cacgttggcg tctatgtcgg caacggtaag tttatccagt ctccgcgcag
     9241 cggtcaggaa attaagatca cctcactgaa cgaagagtac tggcagcgtc attatgtcgg
     9301 cgcccgccgg gtgatgacgc ctaaaacaat tcgctaatat tttatcctgt cgtttaacga
     9361 caggataact tcttcttttg cgccacctct caatttgcta ccctatcctt acgcgcacca
     9421 gggttattgt gcgtgcgcaa tattaataat aaggagagaa gcaatgtcgt tcgaattacc
     9481 tgcattaccg tatgccaaag atgctctggc gccgcatatt tctgctgaga cgctggaata
     9541 tcactatggc aaacatcatc agacttacgt gaccaatctt aacaatttga tcaaaggcac
     9601 ggcgtttgaa ggcaaatcgc tggaagagat cgtgcgcact tccgaaggcg gcatctttaa
     9661 taacgccgct caggtgtgga accacacctt ctactggaac tgcctggcgc caaacgctgg
     9721 cggcgaaccg accgggaaac tggctgatgc tatcgcggca tcttttggca gcttcgcgga
     9781 atttaaagcg cagttcaccg atgccgctat caaaaacttt ggttccggat ggacatggct
     9841 ggtaaaaagc gctgatggca aactggctat cgtttctacc tcaaatgccg gtacgccgct
     9901 gactacggat gcaacgccgt tgctgacggt tgatgtgtgg gaacacgcgt attacatcga
     9961 ctaccgcaac gcccgtccaa actatctgga gcatttctgg gcgctggtta actgggaatt
    10021 tgttgcgaaa aatctcgccg cataagtctg agtacgcaga aggtacgcct tctgcgtttt
    10081 agagagggat agaatagagg agacgcccac tctcagaaga gaggaaatca gtgcagagcg
    10141 gccgttaatc cacctgcgac aatcacgccc agaacaatca gcgtagtaat caacgaaaat
    10201 ttcaggtcgg tactcatcaa gttttctcct ttttattccc acacaaaaag tgatatagcg
    10261 catttttgca cattcccgca caaaaatctc tcatgtttta tattgataac tgtttttaac
    10321 gcttcccctt ttcctcaaga tcagacaaaa ttccaggctt actgaattag cgtaacggcc
    10381 attgacccct tcctgacgtt ccgtgtcgtt tttccggcgt gccgcaaccc tgatgttgcg
    10441 attagggtgt gtgtaggcaa acgtttacct ggcgtttctc aggagcttag cgagggtctg
    10501 gagtgaaatg taatggcaac aattaaagat gtagcgaaac gggcaaacgt ttccactaca
    10561 actgtatcac acgtaatcaa caaaacgcgt tttgtcgctg aagaaacgcg taacgcggtc
    10621 tgggcggcaa ttaaagagct gcactactct cccagcgccg tcgcgcgtag cctgaaggtt
    10681 aaccatacca agtcgatagg cttactggcg accagcagcg aagcggccta ttttgccgaa
    10741 attatcgagg cagttgaaaa aaactgtttc cagaaaggct atacgctgat tttaggcaac
    10801 gcctggaata acctggaaaa acagcgcgcc tacctgtcca tgatggcgca aaagcgcgtg
    10861 gatggcctgc tggtgatgtg ttctgagtat ccagaacctc tgctttccat gctggaagag
    10921 tatcgccata ttccgatggt ggtgatggac tggggtgagg cgaaggccga ttttaccgac
    10981 acggtgattg ataacgcctt tgcaggcggc tatatggcgg gtcgttatct ggttgagcgc
    11041 ggccaccggg atatcggcgt tattcccggc ccgctggagc gcaacacagg cgcggggcgg
    11101 ctggcaggct ttatgaaagc catggaggag gcgctgatca acgtgccgga caactggatt
    11161 gttcagggcg acttcgagcc ggaatccggt taccacgcga tgcagcaaat cttatcgcag
    11221 tcacatcgcc ctaccgccgt tttctgcggc ggcgatatta tggcgatggg cgcgctttgc
    11281 gcagctgacg aaatggggct tcgcgtaccg caggacgttt cggtgatcgg ttatgacaat
    11341 gtgcgtaacg cccgtttctt taccccggcg ctgacgacga ttcaccagcc caaagactct
    11401 ttaggcgaaa ccgcatttaa tatgctattg gatcgcatcg tcaataagcg tgaagagtca
    11461 cagtctattg aagttcatcc acgcctggtt gagcgtcgct cggtcgctga cggcccgttc
    11521 cgcgactatc ggcgttaatc cccgctgtcg ggagcctctt ctggctcccg cagccactcc
    11581 cgattcaacg tttcgctatc gcccaaatag tccagcagcc atgccagcgc gggcgaggcc
    11641 tcgttttgct gccacgtcac gcaacaggcc gcatcgggaa acggattctc taacgtcagc
    11701 gccacccatt ttccgctgtc tatccactgt cgggcaaaat gcgtcggcac cattcccacg
    11761 catagtcctg ccgacaggca ggttgccgat gactcccagt ccggtacgac gacccttttt
    11821 tggttatcca gcaaccaggt aatccgtttc ggtaaggttc gcgaagtgtc ttccctgacc
    11881 agcgacggcc agttgcgcag ggtatcatcg cttaacggcc caggcatcga cgccagcggg
    11941 tgatcgcttg ccactacgca gctccagctc agggtcccca tatcccgaaa agcgtaacgc
    12001 ccccctaccg gaatcgcctg cgtcgcccca atcgccagtt cgacacgccc gtcggagagc
    12061 gcgtcccaga cgccgttaaa cacctcctga aaaaccagca gttccacatc gtcaaaatga
    12121 cgataaaaat cgacgatcat ctgccgggta cgttctggtc tgacgatatt gtccaccgca
    12181 atagctaact gcccgcgcca gccattagca atttgctgac actgttggcg agtgatctgc
    12241 atttttttga taacagaacg cccttctttt aaaaaccaga cgccagcagg cgttagttca
    12301 acatcacggt gacgtcgtac aaaaagcggt acggccagcc actcctctaa ctgacgaacg
    12361 gtgtaactga ctgctgaagg cacacggtgc agttcttgcg ccgccgcgct aaaactgcca
    12421 ttgcgcgcca cggcgtcaac cacttcaagc gagtattccg accacataat ttgcctacaa
    12481 aaattttgaa ttcactggac aaatattaac gtttcacaac cgtaatttca ctccctacac
    12541 tctgcgacaa tgtctgtctg ataagaaaga gaaacaaata tgcaacctgg aaaaggtttt
    12601 ttagtctggt tagccggcct tagcgtgctg ggatttctgg ctacggacat gtacctgccc
    12661 gcgtttgccg ccatacaggc ggatttacaa acgcctgccg ccgctgtcag cgccagccta
    12721 agcctgtttt tagctggctt tgccgtcgcg caactacttt ggggaccgct atcggatcgt
    12781 tatggccgta aaccgatttt actgctgggg ttatctatct ttgcactcgg aagtctgggg
    12841 atgctgtggg tagaaagcgc ggcagcactg ctgacgctgc gctttgtgca ggccgtcggc
    12901 gtttgtgcgg caacggtaat ctggcaagcg ctggtgaccg attattatcc ttcgcaaaaa
    12961 attaaccgta tcttcgccac gatcatgcca ctggtgggat tatccccggc gcttgcgccc
    13021 ttactgggaa gctggatact gacgcatttc tcatggcagg tgattttcgc caccctgttc
    13081 gtgattacgt tgttgctgat gttgccggcg ctgcgcttaa aaccatcggt aaaagcgcgt
    13141 accgaaggac aggataaact cactttcgcg acgttgttac gctctaaaac ctatcgcggt
    13201 aatgtgctga tttatgccgc ctgttccgcc agcttttttg cgtggctaac agggtccccg
    13261 tttattctca gcgcgatggg ttacagcccg gcagtgattg gcctgagcta tgttcctcaa
    13321 accatcgctt ttctgattgg cggatatggt tgccgcgcgg cgctacaaaa atggcagggc
    13381 taccaattgc ttccgtggct gttagggctg tatgcgctga gcgttatcgc cacctgggga
    13441 gcgggccttc tgaataatgc ctcactggtg gagatcctga ttcctttctg cgtaatggcg
    13501 attgctaatg gcgcaatcta ccctatcgtc gtcgcgcaag cgttacgccc tttccctcaa
    13561 gccacggggc gcgctgcggc gctacaaaat acgctgcaac tggggttatg tttcctggca
    13621 agcctggtgg tttcatggct catcagcacg ccgctgctga ccaccaccag cgtaatgctc
    13681 tctaccgttg ttctggcggc gttaggttac aaaatgcagt ctcatgcaga ttgcgctgag
    13741 actggatttc cccatgccaa tgtcgcccac gacaagtctc actaaagact tgttaaccgc
    13801 tggtaattag cacgctaaca attttcggtt gaatcatcaa aaattgcggc ctatactgat
    13861 tcccggttgt tatattacga taattattag gcattaacgg gaaccggagt gttcccgatt
    13921 caccatggat ggccttttcg gcaagggctc ctcccttcct ctgttctacg tcggataact
    13981 ggctcacgga attgtccgtg ggatttctca caaagccaaa aaagcgtcta cgctgtttta
    14041 aggttctgat caccgtccag tgatggagaa actatgagtt catcgtgtat agaagaagtc
    14101 agcgtaccgg atgataactg gtaccgaatc gccaacgaat tgttaagtcg tgcggatatt
    14161 acaattaatg gttccgcccc gtctgacatt cgtgttaaga atcccgattt ttttaaacgc
    14221 gtcctccagg aaggatcgtt ggggttaggt gagagttaca tggatggctg gtgggaatgc
    14281 gagcgtctgg atattttctt cagcaaagtc ttacgtgccg gtcttgaaaa tcaactcccc
    14341 caccatgtca aagatacgct ccgtatcctc ggcgcgcgtc tgattaatct acaaagtaaa
    14401 aaacgcgcct ggattgtcgg caaggaacat tacgatcttg gtaatgacct tttttcccgt
    14461 atgctcgatc cctatatgca atattcttgc gcctactgga aagatgccga tacgctggaa
    14521 gcggcacagc aagccaagct gaaattaatt tgcgaaaagc tacagctaca accggggatg
    14581 cgtgtgctgg atatcggctg cggctggggc ggcctgtcgc aatatatggc gacccattat
    14641 ggcgttagcg tggtgggcgt aacgatctcc gctgaacaac aaaaaatggc gcagacgcgt
    14701 tgcgaaggtc tggatgtctc cattctcctg gaagattatc gcgaccttaa cgatcagttt
    14761 gaccgaatcg tctccgtcgg catgttcgaa catgtcgggc caaaaaacta caacacctat
    14821 tttgaagttg ttgacaggaa tttaaaaccg gatggtcttt tcctgctcca tactattggt
    14881 tctaaaaaaa ccgatcataa tgtcgatccg tggatcaata agtatatttt ccccaacggt
    14941 tgcttgccgt ctgttcgtca aatcgccgag gccagcgaat cacactttgt aatggaagac
    15001 tggcataact ttggcgccga ctatgacacg actctgatgg cgtggcatga gcgctttatc
    15061 aatgcctggc cagagattgc gggcaattat aacgagcgct ttaaacgtat gttcagctat
    15121 tatctcaacg cctgcgcggg tgcgtttcgc gcgcgtgata tccagctttg gcaggtggta
    15181 tttacgcgcg gcgttgaaaa cggtctgcgc gttcctcgct aatcatctcc cccgcatttc
    15241 atgcggggga atcttatttt ccgttagcca atgtcggcct gatttctgac cacattttct
    15301 cgtgtagcca gtacgcgttc tacggtatcg acaaccgcct gcgtttgcgg atcgatctcg
    15361 atattcacac gctcacccag tttttttctg ccaagcgtag tacgttccag cgtttccgga
    15421 atgagatgca cgcagaagcg cgttggcgtt acctcgccga cggtcaaact gatgccgtcg
    15481 acgccgataa agcccttgta caggatatac ttcatcaggg acgcatcctg cactttaaac
    15541 cacacctgat ggttattttc agaggtcagg attttcgcga tctccgccgt cgtaataata
    15601 tgccccgaca tcagatgtcc accgatttca tcgctgaatt tggcggcgcg ctctacgttg
    15661 acctcatcac ctaccctcaa cgcgcccaga ttggtgatgc gcaacgtttc tttcatcaga
    15721 tcaaagctta tctgattgcc gtttatttca gttaccgtca aacagcatcc gttatgcgct
    15781 accgacgccc ccgtctccag cccctccagc atgtagtccg gtaacgtcac cacatgggtg
    15841 cgaaagttgg gtttttcatc aatcgatacc agtttcgcgg taccctgtac gatccccgta
    15901 aacatatctt caactcctga aataaataaa cgcagaactg ttcagcacaa tagcaggtgg
    15961 aaaaacagct tgccagcaat gcgccgttaa caactgtttt ttcactggag aaatagtaat
    16021 accccgctac aatagactga aatttcccct gctatttctt ttggctgcca ctacggcggc
    16081 tttttagtct ttcatataac aacaaaataa aaggtgaata cgtgcagaag tataccagtg
    16141 aagcgcgtca gttattagcg ttagcgatac cggtgatcct tgcgcaagtg gcacagaccg
    16201 caatgggatt cgtcgatacc gtcatggcgg gaggctatag cgctacggac atggctgccg
    16261 tcgctatcgg cacctctatc tggcttcccg ccattttgtt tggtcacggc ttactgctgg
    16321 ccttgacgcc tgtgattgcg caactcaatg gctccggccg tcgtgagcgt atcgcgcatc
    16381 aggttcgaca agggttctgg ctggcgggct ttgtctccgt gctggtgatg atcgtcctgt
    16441 ggaatgccgg atacattatc cgctctatgc ataatattga tccggcgctg gccgataaag
    16501 ccgtgggtta tcttcgcgcg ctgctgtggg gcgcgccagg ataccttttc tttcaggtag
    16561 cgcgaaacca gtgcgaaggt ctggccaaaa ccaaaccggg tatggtgatg ggatttttgg
    16621 gcctgctggt gaatattccg gtgaactata tttttatcta tggccatttt ggtatgccgg
    16681 aactcggcgg tatcggctgc ggcgttgcga ctgcggcggt ctattgggtg atgtttatcg
    16741 ccatgctttc ttacattaaa cacgcgcgtt caatgcgtga tattcgtaat gaaaaaggct
    16801 ttggcaaacc tgatagcgtc gtcatgaagc gcctgattca actggggttg ccgattgcgc
    16861 tggcgctgtt ctttgaagtg acgttgtttg cggtcgttgc gctgctggtt tcgccattag
    16921 gtattgtgga tgtcgccggt catcagattg cgcttaactt tagctcgctg atgttcgtac
    16981 tgccgatgtc gctggctgcg gcggtaacga ttcgagtggg ttatcgtctg ggccagggct
    17041 caacgctgga tgcgcaaacc gcagcgcgta ccggtttagg cgtcggcatt tgtatggctg
    17101 tggttaccgc tatttttacc gttactctgc gtaagcatat tgctttgctc tacaatgaca
    17161 accctgaggt cgtggcgctt gccgcgcaat taatgctgct cgctgcggtt taccagattt
    17221 ccgactctat acaggttatc ggcagcggta ttctgcgcgg ttataaagat acgcgttcca
    17281 tcttttttat cacctttacc gcctactggg tgttaggttt acccagcggt tatatcctgg
    17341 cgttaacgga tttggtggtg gatcgtatgg gaccggcagg cttctggatg gggttcatca
    17401 tcggcctgac ctcggcggcg gtgttaatga tgctacggat gcgctatcta caacgtcagc
    17461 cgtccgccat cattttgcag cgcgctgcgc gataatacga cgatagccgt cgcatggcgg
    17521 ctattttttc gacatgttgc atatttccac cgcaatcagg tgatttcagg aagaaaattg
    17581 cgatttccct cttgcctcat tgcggttgtg acgctaatat tcgtccccgt tgtcacctac
    17641 aacgttgcgt tcatagctca gttggttaga gcaccacctt gacatggtgg gggtcgttgg
    17701 ttcgagtcca attgaacgca ccatcatttt aatgcgtctg tagctcagtt ggttagagca
    17761 ccaccttgac atggtggggg tcgatggttc gagtccattc agacgcacca atccattatc
    17821 ttgtttaatt ttataatacg ctatctggtg cttgtgccag gctaaaagcg attattttca
    17881 gtctctcacc tttatcgtca agcactgctc tatacgctat taccctctta accttcgcag
    17941 tggcctgaag aagcatacca aaagcattta tggtgtttcg gtagaatgcg cataatctat
    18001 cttcatcacc atacgtaaca aggctgcaac gggttcaaat aacgtttcag gaattttatc
    18061 tccgcgttcc acttcaaaaa ataatgagcg ggccagctca acattttcaa caacggggat
    18121 gcagttgcgt tcagcgatgt taacaatata gttagcttga gcatcactgc ctttttccag
    18181 gacgcgtggt attggcatat cggtgggatg atagccaaga caaaccgcaa tatgcgttgg
    18241 attacgcact accgcaacag attgtttaac agattgagct aaactcccac tttgtatttc
    18301 actctgcatt tcccgacgcc gtgtcttcat ttgaggatcg
//
LOCUS       DAJVSD010000067        18332 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.067, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000067 DAJVSD010000000
VERSION     DAJVSD010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 18332)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18332)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18332
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.067"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            287..2665
                     /gene="ppsA"
                     /locus_tag="OQP62_001914"
     CDS             287..2665
                     /gene="ppsA"
                     /locus_tag="OQP62_001914"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HCS1721483.1"
                     /translation="MSNNGSSPLVLWYNQLGMNDVDRVGGKNASLGEMITNLSGMGVS
                     VPNGFATTADAFNQFLDQSGVNQRIYELLDKTDIDDVSQLAKAGAQIRQWIIDTPFQP
                     ALENAIRDAYAQLSSDDENASFAVRSSATAEDMPDASFAGQQETFLNVQGFDAVLVAV
                     KHVFASLFNDRAISYRVHQGYDHRGVALSAGVQRMVRSDLASSGVMFSIDTESGFDQV
                     VFITSAWGLGEMVVQGAVNPDEFYVHKPTLAAGRPAIVRRTMGSKKIRMVYAATQEHG
                     KQVKIEDVPQEQRDIFSLTNEEVQELAKQAVQIEQHYGRPMDIEWAKDGHTGKLFIVQ
                     ARPETVRSRGQVMERYTLHAQGKIIAEGRAIGHRIGAGTVKVIHDIGEMNRIEPGDVL
                     VTDMTDPDWEPIMKKAAAIVTNRGGRTCHAAIIARELGIPAVVGCGDATERMKDGEKV
                     TVSCAEGDTGYVYADMLDFSVKSSSVDTMPELPLKVMMNVGNPDRAFDFACLPNEGVG
                     LARLEFIINRMIGVHPRALLEFDDQDAALQNDIREMMKGFDSPREFYVGRLTEGIATL
                     GAAFYPKRIIVRLSDFKSNEYANLVGGERYEPHEENPMLGFRGAGRYVAESFRDCFAL
                     ECEAVKRVRNDMGLTNVEIMIPFVRTVDQAKAVIEELARQGLKRGENGLKIIMMCEIP
                     SNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSGVVSELFDERNDAVKALLSMAIRA
                     AKKQGKYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTVVQTWLSLAELKK"
     gene            complement(2765..3523)
                     /gene="aroD"
                     /locus_tag="OQP62_001915"
     CDS             complement(2765..3523)
                     /gene="aroD"
                     /locus_tag="OQP62_001915"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HCS1721484.1"
                     /translation="MKTVTVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREATFDI
                     LEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNR
                     AAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVLRLRK
                     MQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEV
                     FGSAATFGAVKQASAPGQIAVNDLRSVLMILHNA"
     gene            complement(3587..3694)
                     /gene="rprA"
                     /locus_tag="OQP62_001916"
     ncRNA           complement(3587..3694)
                     /ncRNA_class="antisense_RNA"
                     /gene="rprA"
                     /locus_tag="OQP62_001916"
                     /product="antisense sRNA RprA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00034"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00034"
     gene            complement(3877..4995)
                     /gene="ydiK"
                     /locus_tag="OQP62_001917"
     CDS             complement(3877..4995)
                     /gene="ydiK"
                     /locus_tag="OQP62_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter YdiK"
                     /protein_id="HCS1721485.1"
                     /translation="MVNVRQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTI
                     VIATWPVLLKLQKILWGRRSLAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTG
                     GDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGSAIMAKVRPYIGTTTIWFVGQAAHI
                     GRFMMHCALMLLFSALLYWRGEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGV
                     VVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTT
                     WGTVLLVWSAVVGTLDNVIRPVLIRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLL
                     AVTWRLFSAWVHEVPAPTNEPEEILEELDDIEEANKQS"
     gene            5260..8316
                     /locus_tag="OQP62_001918"
     CDS             5260..8316
                     /locus_tag="OQP62_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HCS1721486.1"
                     /translation="MIPQISQAPGVVQLVLNFLQALEQQGFTGDTATSYADRLTMSTD
                     NSIYQLLPDAVVFPRSTADVALLARLAAEPRFTSLIFTPRGGGTGTNGQALNQGIIVD
                     MSRYMNRIIEINPEEGCVRVEAGVIKDQLNQALKPYGYFFAPELSTSNRATLGGMINT
                     DASGQGSLVYGKTSDHVLGIRAVLLGGDILDTQSMPVDLARTLGENTTTPGRIYQTVY
                     QSCLENRQLILDSFPKLNRFLTGYDLRHVFNDDMTRFDLTRILTGSEGTLAFITEARL
                     DITPIPKVRRLVNVKYDSFDSALRNAPFMVDARALSVETVDSKVLNLAREDIVWHSVS
                     ELITDVPDKEMLGLNIVEFAGDDEALIDGQVEALCHRLDGLMARAEAGVIGWQLCTDL
                     TGIERIYAMRKKAVGLLGNAKGAAKPIPFAEDTCVPPEHLADYIAEFRALLDGHGLSY
                     GMFGHVDAGVLHVRPALDMCDPQQELLMKQISDEVVALTARYGGLLWGEHGKGFRAEY
                     SPAFFGEVLYGELRKIKAAFDPHNRLNPGKICPPQGIEAPMMKVDAVKRGTWDRQIPL
                     AVRQTWRGAMECNGNGLCFNFDAKSPMCPSMKISLNRIHSPKGRATLVREWLRLLADR
                     GVDPLKLEKELPEKRASLRTLIARTRNSWHKRKGEYDFSHEVKEAMSGCLACKACTTQ
                     CPIKIDVPEFRSRFLQLYHTRYLRPVRDHLVATVETYAPLMARAPKTFNFFINQPVVR
                     NLAKKHIGMVDLPLLSAPSLQQQLVGHPSANMTLEQLERMSAEQKAKTVLVVQDPFTS
                     YYDARVVADFIRLAEKLGRRPVLLPFSPNGKAQHIKGFLNRFAKTAKKTSEFLNRIAA
                     LGMPIVGVDPALVLCYRDEYKLALGEQRGDFHVLLVNEWLAQEINARLSVEVSGEPWY
                     FFGHCTEVTALPGAPAQWAAIFAHFGAKLENVSVGCCGMAGTYGHELTNHKNSLGIYE
                     LSWHQAMQRLPRNRCLATGYSCRSQVKRIEGTGVRHPLQALLEIIG"
     gene            8313..8723
                     /gene="menI"
                     /locus_tag="OQP62_001919"
     CDS             8313..8723
                     /gene="menI"
                     /locus_tag="OQP62_001919"
                     /EC_number="3.1.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA hydrolase"
                     /protein_id="HCS1721487.1"
                     /translation="MIWKREVTLDALNAMGEGNMVGLLDIRFERIGDDTLEATMPVDH
                     RTKQPFGLLHGGASVVLAESIGSVAGYLCTQGEQKVVGLEVNANHVRSARQGRVRGVC
                     KALHTGARHQVWQIEIFDEQGRLCCSSRLTTAIV"
     gene            8822..9010
                     /locus_tag="OQP62_001920"
     CDS             8822..9010
                     /locus_tag="OQP62_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416200.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiH family protein"
                     /protein_id="HCS1721488.1"
                     /translation="MSIDLDPTQLAIEFLRRDKTELSPAQYLKRLKQLELEFADLLTL
                     SATELKEEIYFAWRLGVH"
     gene            complement(9298..10644)
                     /locus_tag="OQP62_001921"
     CDS             complement(9298..10644)
                     /locus_tag="OQP62_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine transporter"
                     /protein_id="HCS1721489.1"
                     /translation="MVVTLAYIALFLVFSWAILRINQKSDSLSKSVFIAIFLGAVIGL
                     SLHFISANHTKTIIEWYSIVGNGYVHLLKLVAIPLIFISILSAINKLENSAGIGKMSL
                     TIVGCMLCLVMVAGFIGLLTAHILGLDASAFVHMPSMLTTEEVNKTAAVSIPQLVTSL
                     IPTNIFLDLTGARSVSVIGIVIFTLIAGIALLKVKKEAPEEGQKLSAGINAIQIWVMK
                     MVRIVIALTPYGVMALMTTVFSSYRLEQFASLLGFIGACYIAIFMMFIVHAILLILSG
                     NNPAHYFRMVWPVLTFAFVSRSSAASIPLAISAQEKFGVQSTIANISASFGSSMGQNG
                     CAGIYPAIMVAMIAPTIGIDPLSLHFLAAMLPAIALGSIGVAGVGGGGTFAALIVLST
                     LNFPVALVGIFIAIEPIVDMARTALNVNGSMMSGVLANRILNNNRADDMPAVIDRP"
     gene            11071..11439
                     /gene="sufA"
                     /locus_tag="OQP62_001922"
     CDS             11071..11439
                     /gene="sufA"
                     /locus_tag="OQP62_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold SufA"
                     /protein_id="HCS1721490.1"
                     /translation="MELHSGTFNPEDFPWQGLTLTPAAAAHIRELAAKQPGMLGVRLS
                     VKQTGCAGFGYVLDTVREPDKDDLVFEAEGAKLFAPLQAMPFIDGTEVDYVQEGLNQL
                     FKFHNPKAQNECGCGESFGV"
     gene            11448..12935
                     /gene="sufB"
                     /locus_tag="OQP62_001923"
     CDS             11448..12935
                     /gene="sufB"
                     /locus_tag="OQP62_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HCS1721491.1"
                     /translation="MSRNTEATEEVGIWTGGRLNYKEGFFTQLPTDELAKGISEEVVR
                     AISAKRNEPDWMLEFRLNAYRAWLDMDEPHWLKAHYDKLNYQDYSYYSAPSCGNCDDS
                     CVSQPGAVQQTGANTFLSKEVEDAFEQLGVPVREGKEVAVDAIFDSVSVATTYREKLA
                     EQGIIFCSFGEAIHDHPDLVRKYLGTVVPGNDNFFAALNAAVASDGTFIYVPKGVRCP
                     MELSTYFRINAEKTGQFERTILVADEGSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKD
                     AEVKYSTVQNWFPGDNNTGGILNFVTKRALCEGENSKMSWTQSETGSAITWKYPSCIL
                     RGDNSIGEFYSVALTSGHQQADTGTKMIHIGKNTRSTIISKGISAGHSQNSYRGLVKI
                     MPTATNARNFTQCDSMLIGADCGAHTFPYVECRNNSAQLELEATTSRIGEDQLFYCLQ
                     RGISEEDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSVG"
     gene            12952..13698
                     /gene="sufC"
                     /locus_tag="OQP62_001924"
     CDS             12952..13698
                     /gene="sufC"
                     /locus_tag="OQP62_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008500629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HCS1721492.1"
                     /translation="MLSIKDLQVSVEEKAILRGLNLDIRPGEVHAIMGPNGSGKSTLS
                     ATLAGREDYEVTGGSVTFKGKDLLELSPEERAGEGIFMAFQYPVEIPGVSNQFFLQTA
                     LNAVRAYRGQASLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA
                     VLEPELCILDESDSGLDIDALKIVAEGVNALRDDKRAFIIVTHYQRILDYIKPDYVHV
                     LYQGRIVRSGDFTLVKQLEEQGYGWLTEQQ"
     gene            13673..14944
                     /gene="sufD"
                     /locus_tag="OQP62_001925"
     CDS             13673..14944
                     /gene="sufD"
                     /locus_tag="OQP62_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HCS1721493.1"
                     /translation="MAGLPNSSKALQQWQHLFEEKGEIRTEQARQHFQQMLRLGLPTR
                     KHEDWKYTPLEGLTHSQFIQQCATISAAQRDALALQIDAVRLVFVDGRFMPELSDSTQ
                     NSGFDVSVRDERQTLAAPVHPEVFLHLTESLAQCVTYIQVRRNQRPTRPLLLMHITQG
                     VDSDELNTAHYRHHLTLAEGAEATVIEHYVSLTAAKHFTGARLTMNVADNAQLRHIKL
                     AFENASSYHFAHNDLLLATDASAFSHSFLLGAAVLRHHSSSQLNGENATLRLNSLAMP
                     VKNEVCDTRTWLEHNKGYCNSRQLHKTIVSDKGRAVFNGLINVAQHSIKTDGQMTNNN
                     LLLGKLAEVDTKPQLEIYADDVKCSHGATIGRIDDEQMFYLQSRGIRQQEARHMILYA
                     FAAELTEAIHDSALKQQVLARIGQRLPGGLV"
     gene            14941..16161
                     /gene="sufS"
                     /locus_tag="OQP62_001926"
     CDS             14941..16161
                     /gene="sufS"
                     /locus_tag="OQP62_001926"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase SufS"
                     /protein_id="HCS1721494.1"
                     /translation="MTFPVEKVRADFPILQREVNGLPLAYLDSAASAQKPNQVIDAES
                     AFYRHGYAAVHRGIHTLSAQATESMENVRKQASRFINARSAEELVFVRGTTEGINLVA
                     NSWGTENIRAGDNIIISEMEHHANIVPWQMLCERKGAELRVIPLHPDGTLRLETLAAL
                     FDDRTRLLAITHVSNVLGTENPLPDMIALARQHGAKVLVDGAQAVMHHAVDVQALDCD
                     FYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMISTVSLTQGTTWAKAPWRFEA
                     GTPNTGGIIGLGAAIDYVTSLGLDKIGDYEQMLMRYALEQLAQVPDITLYGPAQRLGV
                     IAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAWYGVPAMCRASLAMYNTHEEVD
                     RLVAGLTRIHRLLG"
     gene            16174..16590
                     /gene="sufE"
                     /locus_tag="OQP62_001927"
     CDS             16174..16590
                     /gene="sufE"
                     /locus_tag="OQP62_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfuration protein SufE"
                     /protein_id="HCS1721495.1"
                     /translation="MAALPDKEKLLRNFTRCANWEEKYLYIIELGQRLAELNPQDRNP
                     QNTIHGCQSQVWIVMRRNANGIIELQGDSDAAIVKGLMAVVFILYHQMTAQDIVHFDV
                     RPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAATLS"
     gene            16745..17745
                     /locus_tag="OQP62_001928"
                     /pseudo
     CDS             16745..17745
                     /locus_tag="OQP62_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460340.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
     gene            complement(17812..18051)
                     /locus_tag="OQP62_001929"
     CDS             complement(17812..18051)
                     /locus_tag="OQP62_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major outer membrane lipoprotein"
                     /protein_id="HCS1721496.1"
                     /translation="MNRTNKLILGAVVLGSTLLAGCSSNAKIDQLSSDVQTLSAKVDQ
                     LSNDVNAMRSDVQAAKDDAARANQRLDNKVFRICK"
     gene            complement(18134..>18332)
                     /gene="lpp"
                     /locus_tag="OQP62_001930"
     CDS             complement(18134..>18332)
                     /gene="lpp"
                     /locus_tag="OQP62_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="murein lipoprotein Lpp"
                     /protein_id="HCS1721497.1"
                     /translation="GSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA
                     AKDDAARANQRLDNQATKYRK"
BASE COUNT         4527 a         4552 c         5081 g         4172 t
ORIGIN      
        1 gtaacgggaa acgtataact tgtcgcttat tttataaaat gacaggcact ttttataatt
       61 aatgaaaagt gtgtttcatt tccttgaaac gcagtttatg ccgggagtga ttaagggaat
      121 gccgtgctat gcgcgggttt gcgcaactac gtaaacaatc tgaaaaaatg aaaaaataaa
      181 tttgcttgaa cgattcaccg tttttttcgc gggtttaagt atgccaggat aaatacgcaa
      241 ctatgtgttt cttaaactcg ttcatttatc acaaaaggat tgttcgatgt ccaacaatgg
      301 ctcgtcaccg ctggtgcttt ggtataacca actcggcatg aatgatgtag acagagttgg
      361 gggcaaaaat gcctccctgg gtgaaatgat tactaacctt tccggcatgg gcgtatccgt
      421 tccgaatggt tttgcaacca ctgccgatgc gtttaaccag tttttggatc aaagcggcgt
      481 aaaccagcgc atttatgagc tgctggataa gacagatatt gatgatgtct cccagctggc
      541 gaaagcgggc gcgcagatcc gccagtggat tatcgacact cctttccagc cggcgctgga
      601 aaacgccatc cgcgatgcct atgcgcagct ttcgtcggat gatgaaaatg cctcttttgc
      661 cgtgcgttcc tccgccacgg cggaagacat gccagatgct tcgtttgcgg gtcaacagga
      721 aacgtttctt aacgttcagg gcttcgatgc ggtactggtg gcagtgaaac acgtatttgc
      781 ttctctgttt aacgatcgcg ccatctctta tcgcgttcac cagggatatg atcatcgcgg
      841 cgtagcgctt tccgctggcg tgcagcggat ggttcgctcc gatctcgcct cgtcaggggt
      901 gatgttctct atcgataccg aatccggctt tgaccaggtg gtctttatca cctcggcatg
      961 gggactgggt gaaatggtgg tgcagggcgc ggttaacccg gatgaatttt atgtccataa
     1021 gccaaccctg gcggcaggcc gtccggccat cgtacgccgc accatggggt cgaaaaaaat
     1081 ccgcatggtt tacgccgcca cccaggagca cggtaagcaa gtgaagattg aggatgtgcc
     1141 gcaggaacag cgcgacattt tctcgctcac caacgaagaa gtgcaggaac tggcgaaaca
     1201 agcggtgcag attgagcagc actatggtcg tccgatggat atcgaatggg cgaaagacgg
     1261 tcataccggt aagctcttta ttgtgcaggc acgtccggaa accgtgcgct ctcgtggcca
     1321 ggtgatggag cgttatacgt tacatgcgca ggggaaaatc attgccgaag gtcgtgccat
     1381 tgggcatcgt atcggcgcag gtacggtaaa agttattcac gatatcggcg aaatgaaccg
     1441 tattgagcct ggcgatgtgc ttgtcaccga tatgaccgac ccggactggg aaccgatcat
     1501 gaaaaaagcg gcggcgattg tcactaaccg tggcgggcgc acctgtcacg cggcgattat
     1561 cgcccgcgaa ttgggcattc cggcggtagt cggctgcggc gacgccaccg aacgcatgaa
     1621 agatggcgaa aaagtaaccg tctcctgtgc ggaaggtgat accggttatg tgtatgccga
     1681 catgctggat ttcagcgtaa aaagctccag cgtagatacc atgccagagc taccgctgaa
     1741 ggtcatgatg aacgtcggca acccggacag ggcatttgac tttgcctgcc tgccgaatga
     1801 aggcgtaggt ctggcgcgac tggaattcat cattaaccgt atgattggcg ttcacccgcg
     1861 cgcgttgctg gagtttgacg accaggatgc cgcgctgcaa aacgacattc gtgagatgat
     1921 gaaagggttt gactcgccgc gtgaatttta cgttggtcga ctgacggaag ggatcgcgac
     1981 gttaggcgcc gccttctacc cgaaacgcat tatcgttcgc ctgtctgact ttaagtccaa
     2041 cgaatacgcc aacctggtcg gcggcgaacg ttatgagccg catgaagaaa acccgatgct
     2101 gggcttccgc ggcgcgggtc gttacgtcgc agaaagtttc cgcgattgtt ttgcgctgga
     2161 atgcgaagcg gtgaaacgcg tgcgcaacga tatgggcctt accaacgtcg aaatcatgat
     2221 cccgttcgtg cggacggtcg accaggcgaa agcggtcatc gaagagctgg cgcgccaggg
     2281 acttaaacgc ggcgagaacg ggctgaagat catcatgatg tgcgagattc cgtccaatgc
     2341 cttgctggct gaacagttcc tcgagtattt tgatggcttc tcgattggtt ctaacgacat
     2401 gacgcagctg gcgctggggc tggatcgcga ttccggcgtg gtgtctgaac tgtttgacga
     2461 gcgtaacgac gcggtgaaag cgctgctatc gatggcgatc cgcgcggcga aaaaacaggg
     2521 caaatatgtt ggaatttgcg gccagggccc gtccgaccat gaagactttg ccgcctggct
     2581 gatggaagag gggatcgaca gcctgtcgct gaacccggac accgtggtgc agacctggct
     2641 gagtctggcg gaactgaaga agtaaaccgc gaccagataa cgctatgctt atccggcctg
     2701 cacaagaaac atgttgtgtc ggccggatag ggcgtaagtt gcccgacgcc tgcataatgc
     2761 cggatcaggc gttgtgcaga atcattaata cactgcgtag atcatttacg gcgatttgcc
     2821 ccggcgctga agcctgcttc accgcgccaa acgtggcggc agagccaaac acttcccctg
     2881 ccagacgtga aatgacaccc tctttcgcca ttgacatagt aattaccgga cggtcggcgt
     2941 aatgttgctg catctccagc gtggcagtga gtaacgttaa tacatcatgc ttgctttgcg
     3001 gcataacggc aatcttggga atatccgcgc cgagtgcttg cattttacgt agccgcagaa
     3061 ccatttcctc tgcggacggc gtctggtgaa aatcgtggtt agacatcacg acataaacat
     3121 tatgcgcatg ggcataatcg acagtggctt taacgtcagc atcaccggta aatagctcaa
     3181 gatcgatcat atcgaccagg ccgctgtcga ttgcggcacg attaagcgtg agataatgct
     3241 gagtggttat tgtctgctcg ccgccttctt tggcgctgcg gaaagtaaac agtaacggaa
     3301 tgtcaggcat cgcatcgcgg ataacacgcg cagcggtaag aacggattga gtcgatgcga
     3361 tatccataaa gtgatccacg cgccactcca gaatatcgaa tgtagcttcg cggtaggcca
     3421 gcgcctccgc tttcacgcta ttgatgtctc ttcccatcaa cgacacgata attttgggca
     3481 tcccttcgcc aatgataaga ttttttacgg tgacggtttt catgcgtgtc ctgtcagttt
     3541 tttttcttct cgccattatg aacggtgagg ctggccgctt gaagtaaaaa aaaaaagccc
     3601 atcgtaggag acgggcaaag actacacaca gcaattcgtt gtttcactca ggggatttcc
     3661 atgcttataa atcaatgtgt tgatttataa ccgtgtgcta atagtaggca tgagcacttt
     3721 ttgcgtcgat cagattcgtc tcaatagttt aaaaactgta acggatttgc gacagaaatg
     3781 agatgcggcg gggaacagac gggcgaatca aaatggggtg tgcgttgaat tgataaacgt
     3841 cgctaaagca tcgggcggca atgccgcccg acgggattat gactgcttgt tggcttcctc
     3901 gatgtcatcc agctcttcaa ggatctcctc tggttcattc gtcggcgccg gaacttcatg
     3961 tacccatgcg gagaacaaac gccaggtcac ggccagaagc accggtccaa taaacagacc
     4021 aatcataccg aatgcaatca ggccgccgat taccccggaa aggatcagaa gcagcggtaa
     4081 atcggcgccc atgcggatga gtaccgggcg aatcacgtta tccagagtgc cgacgacggc
     4141 gctccaaacc agcagcacgg tgccccaggt ggtgtcgcct gtccagtaaa gccagataat
     4201 ggctggaatc aataccggca acggccccaa ctgaaccagg cacgaaagga tcatcactac
     4261 cgtcaacagg gtagcgtaag gcacgccgga aatcgccagc ccgacgccgc caagtaccgc
     4321 ctgtaccagc gcggtgacca ccacgccaag cgccacggcg cggatcgcct gggcagccag
     4381 cagaaccgcc gcatcgccgc gtttagccgc gagacgacag gcaaaatggc gtatacccat
     4441 cgccacttgt tcgccgcgcc agtaaagcag ggcgctaaac aacagcatca gggcgcagtg
     4501 catcataaag cgtccgatat gcgccgcctg accgacaaac cagatcgtgg ttgtgccgat
     4561 ataaggccgc actttcgcca taatagcgct accgcccata tccagcaggc tatgccatcc
     4621 ggcatacagt ttggcgccaa ctaacggaat attatttaac catgccagat cgggtagcgt
     4681 catatcgccg ccggtcactg catggatgag cgggccgcta ccatcgacaa tgctgttcac
     4741 cagcaaggcg acgggaataa cgaagagcag cactaacagc agcgtcatga ccagtacggc
     4801 aagcgagcgg cggccccaca atattttttg taatttcagc aaaacgggcc aggtcgcgat
     4861 aacaatcgta cctgcccatg caaaccccaa aataaaaggc tgtactatcc acaaacaggc
     4921 cacaatcatg atggctaaaa acagcaccga tagcagcact tgcgcaatat ccctgggctg
     4981 acgaacattt accataaata cttttcacct ttgtctttgc gccagaacgt tggcgcgacg
     5041 tgaacatgca aaccacaccc tataatgatg agcaatttca gcggttttta acaggccgat
     5101 tctgcatgta attctgttgg gcgcacagga aaaaaatgtg atacaacaaa taacgcaaca
     5161 cgcaaacgat taagcatccc ttcctgtgcg tagaccgctc gcgctcgccg ggttgggcgc
     5221 caccgttcac aacatagacc gcaggaaaag gtcaatataa tgattccaca aatttctcag
     5281 gcacccggcg tcgttcagct ggtgctcaat tttttgcagg cgctggagca gcaagggttt
     5341 acgggcgata cggcaaccag ctatgccgac cgtctgacaa tgtcgaccga taacagtatc
     5401 taccagcttc ttcccgatgc tgttgtgttt ccccgttcta cggcggatgt cgcgcttctt
     5461 gcccgtctgg cggcggagcc gcgctttacg tcgctgatat ttaccccgcg aggcggcggt
     5521 actggcacga atggccaggc gctaaaccag ggcattattg ttgatatgtc ccgctatatg
     5581 aaccgcatta ttgaaattaa tcctgaagag ggatgtgtgc gggtagaggc gggagtgata
     5641 aaagatcagc ttaatcaagc gttaaagccg tatggctatt tttttgcgcc ggaactttcc
     5701 accagtaatc gcgccacgct tggcggtatg attaataccg atgcctctgg tcagggttcg
     5761 ctggtctatg gaaaaacgtc agatcacgtc ttaggcatac gggccgtatt gttggggggc
     5821 gatatccttg acacgcaatc gatgcccgta gatcttgccc ggacgctggg tgaaaacacg
     5881 acgacgccag gccgcatcta tcagaccgtc tatcagtcct gcctggaaaa ccgtcaactt
     5941 atcctcgata gctttccaaa gctcaatcgc ttcctgacag gctacgattt acgccacgtc
     6001 tttaacgatg acatgacccg cttcgatctc acccgcatct taacggggtc ggaagggacg
     6061 ctggcgttta ttactgaagc ccggctggat attaccccga tacccaaagt ccgccgtctg
     6121 gtgaatgtaa aatacgactc ctttgattcc gcgctgcgta acgccccttt tatggttgac
     6181 gcgcgcgcct tatccgtcga gacggtcgat tccaaagtcc ttaaccttgc gcgggaagat
     6241 attgtctggc actccgttag cgaattgatt accgatgtgc cggataaaga gatgcttggc
     6301 ctgaatatcg tggaattcgc gggtgatgat gaagcgctta ttgacggaca ggtcgaggcg
     6361 ctgtgccacc gactggatgg cctgatggcg cgtgcggaag cgggcgtgat cggctggcaa
     6421 ctttgtaccg atttgacggg tattgagcgt atttacgcga tgcgtaaaaa agcggtaggg
     6481 ctgctgggta atgcgaaagg cgctgccaaa ccgattcctt ttgcggaaga tacctgtgtg
     6541 ccgcctgaac atctggccga ttacatcgcc gaatttcgcg ctctgctgga tggtcatggc
     6601 ttaagttacg gcatgttcgg ccacgtggat gccggggtgc tgcatgtgcg cccggcgctg
     6661 gatatgtgcg atccgcagca ggaactgttg atgaaacaga tctccgatga ggtcgtcgcg
     6721 ctgaccgcca gatacggcgg gttgttgtgg ggcgaacatg gaaaaggttt ccgtgcggaa
     6781 tacagcccgg cctttttcgg cgaagtcctg tatggcgagc tgcgcaaaat aaaagcggct
     6841 tttgatccgc ataatcgact taacccgggt aaaatctgtc cgccgcaggg gatagaggcg
     6901 ccgatgatga aggtggatgc ggtaaaacgc ggcacctggg atcggcaaat cccgctggcg
     6961 gtgcggcaga cctggcgcgg cgctatggag tgtaatggta acggcctgtg ctttaatttc
     7021 gatgcgaaaa gcccgatgtg cccgtcgatg aaaattagcc ttaaccggat ccactcgccg
     7081 aaagggcggg cgacgctggt gcgggaatgg ctccgtctat tggccgatcg cggcgtcgat
     7141 ccgttgaagc tggaaaagga gctgccggaa aaacgcgcca gcttgcgcac gctgattgcc
     7201 cgcacccgga atagttggca caaacgcaaa ggcgagtatg acttttccca tgaagttaaa
     7261 gaggccatgt ccggctgtct ggcatgtaaa gcctgtacga cccagtgtcc gattaaaatc
     7321 gatgttccgg agtttcgttc acgtttctta cagctttacc atacgcgtta tctgcgcccg
     7381 gtacgcgatc atctggtggc gacggtcgag acctacgcgc cgctgatggc gcgtgcgcca
     7441 aagaccttta acttttttat taaccaaccg gtggttcgta atctggcgaa aaaacatatc
     7501 ggtatggtgg atttacctct gctttctgcc ccttcattgc aacagcaact ggtgggccat
     7561 ccgtctgcca atatgacgct tgagcaactg gagcgcatga gcgccgagca aaaagcgaaa
     7621 acggtactgg tagttcagga tccgtttacc agctactacg acgctcgggt cgtagcggac
     7681 tttatccgcc tggcggaaaa actgggcagg aggccggtat tgttaccgtt ctcgccgaat
     7741 ggtaaggcgc agcatattaa aggttttctt aatcgctttg cgaaaacggc gaaaaaaacc
     7801 tctgagttcc ttaatcggat cgccgcgttg gggatgccaa tagtgggcgt cgatccggcg
     7861 ctggtcctgt gttatcgcga cgaatataaa ctggcgctgg gcgaacagcg cggcgatttt
     7921 catgtgttgc tggtgaatga atggctggcg caggaaataa atgcaagact gtccgtcgag
     7981 gtaagcggtg aaccgtggta cttttttggt cattgtacgg aagtcacggc tttacccggc
     8041 gcgcctgcgc agtgggccgc catctttgcc cattttggcg cgaagctgga aaatgtcagc
     8101 gtaggctgct gcggtatggc gggcacttat ggacatgaac tcaccaatca taaaaattcg
     8161 ctgggaattt atgagctatc ctggcatcag gcgatgcaac gtctaccgcg aaaccgctgc
     8221 ctggcaaccg gctattcctg ccgaagccag gttaaacgca ttgaaggtac gggcgtgcgt
     8281 cacccgttgc aggcattact ggagattata ggttgatctg gaaacgtgaa gtgaccctcg
     8341 atgcgcttaa tgcgatgggg gaagggaata tggttggcct gcttgatatc cgctttgagc
     8401 gtattgggga cgatacgctg gaagcgacaa tgcccgtcga tcatcgcacc aaacagccgt
     8461 tcggcttgct gcatggcgga gcgtctgtgg tgctggcgga aagtatcggc tcggtcgcag
     8521 gctatctgtg tacgcagggg gagcaaaagg tggtggggct ggaggtgaat gccaaccatg
     8581 tacggtcggc gcgtcagggg cgcgtacgag gcgtctgtaa agcgttgcat accggggctc
     8641 gccatcaggt ctggcagata gagatctttg atgaacaggg acgtctgtgc tgttcttcgc
     8701 gccttactac ggcgattgtg tgacgttgtc accataaaag tgtgatgcat attgcttttg
     8761 gtcaaaatgt gcgcagaaaa aggtgatata ctgtgcacgt ttacacataa gcgaggatga
     8821 tatgtctatt gatttagacc caacccaact ggcgattgaa tttttacgcc gtgataaaac
     8881 cgaactttct cccgcgcagt atttgaagcg tttaaaacag ctggagttag agtttgccga
     8941 tctcctcacc ctctctgcaa ccgaactgaa agaagagatc tatttcgcct ggcggttggg
     9001 cgtgcattaa tagagtctgt gtaggccgga taaggcgtta gccgccatcc ggctatgtta
     9061 ccaggcaatc tcaccagaca ctgtcccccg gtaatagata acccccttga ttttgtgtaa
     9121 aaaaaataca gatcgccatt tgtgctaaaa aggtgcgctc tctttatgag attattctta
     9181 tgccccttca agagctaagc cattaagagt gccggagata agcgccggat ggggccggaa
     9241 cccttaagcc tgtattgaac agacttaagg gtttttcttt tccgggcgcg taaaaaacta
     9301 aggtctgtca ataaccgctg gcatgtcgtc agccctatta ttattcaaaa tacggttagc
     9361 cagcacacct gacatcatcg atccgttaac gttcagagcc gtgcgggcca tatcaacgat
     9421 aggttcgatg gcaataaaaa taccgaccag cgcaacggga aaattcaacg tcgacaggac
     9481 aatcagcgcc gcgaacgtac caccgccgcc gacgccggct acgccaatag accctagcgc
     9541 aatggcaggc aacatcgcgg ccagaaaatg cagcgagagc ggatcgatgc cgatggtggg
     9601 cgcaatcatc gctaccataa tagccggata aatcccggcg cagccatttt gccccatact
     9661 ggagccaaac gaggcggaaa tattggcaat ggtgctttgt acgccaaatt tttcctgggc
     9721 ggaaatggcc agcggaatag aggctgcgct gctgcgggag acaaacgcaa aggttaagac
     9781 gggccagacc attctgaaat aatgcgctgg attattaccg ctgaggatca gcaagatggc
     9841 gtgcacgata aacatcatga aaatcgcgat ataacaggcg ccgataaaac caagtaagct
     9901 ggcgaattgt tcaaggcggt atgatgaaaa tacggtggtc attaatgcca tgacgccata
     9961 gggcgttaat gcaataacga tacgtaccat cttcatgacc cagatctgga tagcgttaat
    10021 gcctgcgctt aatttctgac cttcttccgg cgcctctttt ttgaccttta acagggcgat
    10081 ccccgctatt agcgtgaaga taacgatgcc gataacggaa acacttctgg ctcccgtaag
    10141 atcaagaaaa atatttgtcg ggatcagcga tgtcactaac tggggaatcg acaccgcggc
    10201 agtcttattg acttcttctg tagttaacat tgacggcatg tgcacaaaag cgctggcgtc
    10261 aagccccagt atatgagcgg tcagtaatcc gataaaaccg gcaaccatca ccaggcataa
    10321 catgcatccg acgatcgtca gcgacatttt tccgatgccg gcgctatttt ccagtttatt
    10381 gatggcggaa agaatagaaa taaaaattag cggtatagcg accagtttta acagatggac
    10441 gtagccattg ccgacgatgc tgtaccattc gataatggtt ttagtgtgat ttgctgaaat
    10501 aaaatgcagg gataaaccaa taacagcccc taaaaagata gcgataaaaa cgcttttcga
    10561 cagggaatcg cttttttgat taattctcaa gatggcccac gagaaaacca aaaaaagtgc
    10621 gatatacgcg agcgtaacaa ccatatttta agcctcttgc ctcattcagc acctgaaatg
    10681 ccggaaagag tttacataaa cctatagctc aaactgagtt atagaaccgc agcggattat
    10741 aaagagcgca acgccaggta tccatacaaa aaatggggtt ctgacctcgc cgcccggcaa
    10801 tgtcgacagc ctattaatta aatagtcatt ttctatacat cttttcgttt ttgacctgcc
    10861 agaacggtta atgtcttata aatcattact tatcaaaaag ttaagtggtt ttttgtctgt
    10921 cgtatgacct ggcggacagg gtctatgctt aataaaaggc gctcaatatg accatttgtt
    10981 ggaaagcccc tgcggttaag gggttgaagt gataatcatt atcactaaca tgctgttata
    11041 tcctggtgat ttagaacgcg aggtaactct atggaattgc attcaggcac gtttaacccg
    11101 gaggacttcc cctggcaagg gctgacgcta acgccagcgg cggcagcgca catacgtgaa
    11161 ctggcagcaa agcagccggg catgttgggc gtgcggttaa gcgtaaaaca gacgggatgt
    11221 gccggatttg gctatgttct ggataccgtt cgggagccgg ataaagacga tctggttttt
    11281 gaagccgaag gcgcaaagct tttcgcaccg ttacaggcga tgccttttat tgacggaaca
    11341 gaagtggatt acgtacagga agggctgaac cagttattta aatttcataa ccccaaagcc
    11401 cagaatgaat gtggctgcgg cgaaagtttt ggggtatagg cggtactatg tctcgtaata
    11461 ctgaagcaac ggaagaggtc ggcatctgga caggcggacg ccttaattac aaagaaggat
    11521 ttttcacgca attacccact gatgaactgg caaaaggcat cagcgaagag gtggtgcgtg
    11581 cgatttccgc aaagcgtaac gaacctgatt ggatgctgga atttcgcctc aatgcctata
    11641 gagcctggct ggacatggat gaaccgcact ggctgaaagc gcattacgat aaactgaact
    11701 atcaggacta cagctattac tctgcgccat catgcggaaa ctgcgacgat agctgcgttt
    11761 cccagccggg agccgtacag caaacgggcg cgaatacctt tttgagtaaa gaggttgaag
    11821 acgctttcga gcaacttggc gttccggttc gcgaagggaa agaggtcgcc gttgatgcga
    11881 tttttgactc ggtctccgta gcgaccacat accgtgaaaa actggcggaa cagggcatta
    11941 ttttctgttc ttttggcgaa gcgatacacg atcaccctga cctggtcagg aaatatcttg
    12001 gcaccgtcgt gccggggaac gataactttt ttgccgcgct gaatgcggca gtcgcttccg
    12061 atgggacatt tatctatgtt cccaaaggcg tgcgttgccc aatggagtta tccacctatt
    12121 ttcgcattaa cgctgagaaa accggtcagt ttgagcgcac gattctggtg gcggatgaag
    12181 gcagctatgt gagttatatc gaaggctgct ccgcgcccgt acgcgacagt tatcagctcc
    12241 acgccgcggt agtggaagtc atcatccata aagatgctga agtaaaatat tccaccgtac
    12301 aaaactggtt cccgggcgac aacaacacgg gcggcattct gaactttgtg accaagcggg
    12361 cgttgtgcga aggggaaaac agcaagatgt cgtggaccca gtcggaaacc ggttcggcga
    12421 ttacctggaa atacccgagc tgcattctgc gcggtgataa ttctatcggc gagttctatt
    12481 ccgttgcgct gaccagtgga catcagcagg ctgacaccgg caccaaaatg atccatatcg
    12541 gtaaaaacac gcgctcaacc attatctcaa aaggcatttc cgccggccac agccagaaca
    12601 gctaccgtgg gctggtaaaa attatgccga cggcaaccaa cgcccgaaat ttcacccaat
    12661 gcgactccat gttgattggc gcggactgcg gcgcgcatac gttcccgtat gttgaatgcc
    12721 gcaataacag cgcgcagctg gagctcgagg cgacgacatc acgcatcggt gaagatcagc
    12781 ttttctattg tctgcaacgc ggcatcagcg aagaagacgc tatttcgatg atcgtcaacg
    12841 gtttctgcaa agacgttttc tcggaactgc cgctggagtt cgccgttgaa gcgcaaaaac
    12901 tgctggcgat tagccttgag cacagcgtcg gttaatgatg aaggaaaacc catgttaagc
    12961 attaaagatt tacaggtcag tgtggaagaa aaggcgattt tgcgtggcct gaatctggat
    13021 attcgccccg gcgaagttca cgccattatg gggccgaacg gttccgggaa aagcacgctc
    13081 tccgccaccc tggcgggacg tgaagattat gaggtcaccg gcggctcggt tacgttcaaa
    13141 ggtaaagatc tgcttgaact gtcgccggag gaacgggcgg gcgaagggat ttttatggcc
    13201 ttccagtacc cggtagaaat ccccggcgtc agtaaccagt ttttcctgca aaccgcgctg
    13261 aatgccgtgc gcgcctatcg agggcaggcg tcgttggatc gctttgattt tcaggatctg
    13321 atggaagaaa agatcgcatt gctgaaaatg ccggaagatt tgctgacccg ttcggtaaac
    13381 gtcggttttt ccggcgggga gaaaaagcgc aatgatattt tgcaaatggc ggtgctggaa
    13441 ccggaactgt gcattcttga tgagtcggac tccggactgg atatcgatgc gttgaaaatt
    13501 gtggcggaag gcgtcaacgc gttacgcgac gataaacgcg cttttattat cgtgacccac
    13561 tatcagcgca tactggacta catcaagcct gattacgtcc atgtcctcta tcaggggcga
    13621 attgtccgtt ccggcgattt tactctggtc aaacaactgg aggagcaggg ttatggctgg
    13681 cttaccgaac agcagtaaag cgctacagca atggcagcat ctctttgaag aaaaaggaga
    13741 aattcgaact gagcaggcaa gacaacattt ccaacagatg ttacgtctgg gattgccgac
    13801 gcgtaaacat gaagactgga aatacacgcc gctggagggc ttaacccata gccagtttat
    13861 ccagcagtgt gcgactatca gcgccgccca gcgtgatgcg ctggcgctgc aaatcgatgc
    13921 cgtgcggctg gtgtttgtcg acggacggtt tatgccagag ctcagtgata gcacgcaaaa
    13981 cagcggattt gacgttagcg tcagagatga gcgccagacg cttgccgcgc cggtacatcc
    14041 cgaggttttt ctgcatctga cggaaagcct ggcgcaatgt gtcacgtata tacaggtacg
    14101 gcgaaatcag cgtccgacca ggccgctact gttaatgcat atcacgcagg gcgtggatag
    14161 cgacgagctg aataccgcgc attatcgcca ccatctgacg ctggcagaag gcgcggaagc
    14221 gacggttatt gagcattatg tcagccttac agcggcaaaa cattttaccg gcgcgcgtct
    14281 gacgatgaac gttgcagaca atgcgcaact gcgtcatatc aaactggcgt ttgaaaatgc
    14341 gtccagctat cactttgcgc ataacgatct tctgctggcg acagacgcct cggcgtttag
    14401 ccacagtttt ctgctgggcg ccgcagtact acgtcaccac agcagctcac aactgaatgg
    14461 cgaaaacgcg acgcttcgac tgaatagtct ggcgatgcca gtgaaaaatg aagtctgcga
    14521 tacgcggaca tggctggaac ataacaaagg ctactgtaac agccgccagt tgcacaagac
    14581 catcgtcagc gacaaaggac gcgcggtctt taatggcctg attaacgtgg cgcaacactc
    14641 cattaaaacc gacggccaga tgaccaataa taacctattg ttggggaaac tggctgaagt
    14701 cgataccaaa ccgcaattag agatctatgc cgatgacgtg aagtgcagcc acggcgcgac
    14761 gatcgggcgt attgacgatg agcagatgtt ttatctgcaa tcacgcggca tcaggcagca
    14821 ggaggcgcgg cacatgattc tttacgcgtt tgccgcagag ttaacggaag ctatccatga
    14881 tagcgccctt aaacagcagg tgctggcgcg aatcggccag cgactgcccg gaggcctggt
    14941 atgacatttc ctgtagaaaa agtacgggcg gattttccca tactgcagcg tgaagttaac
    15001 ggcctgccgc tggcttacct ggacagcgca gccagcgctc aaaaacctaa tcaggtgatt
    15061 gatgctgaat ctgccttcta ccgtcacggc tatgctgcgg tacatcgggg tatccatacg
    15121 ttaagcgcgc aggcgaccga aagcatggag aatgtgcgta agcaggcgtc gcggtttatt
    15181 aacgcccgct ccgcagaaga actggtgttc gtgcgcggta cgacggaggg cattaacctt
    15241 gtcgccaaca gttggggaac ggaaaatatt cgcgccgggg ataacattat catcagcgag
    15301 atggagcatc acgccaacat cgttccctgg cagatgctgt gcgagcgcaa aggcgctgaa
    15361 ctgcgcgtga tcccattgca tcctgacggt acgctgcggc tggagacctt agctgcgctg
    15421 ttcgatgacc ggacccgact gctggccatt acccatgtat ctaatgtgct ggggacggaa
    15481 aacccactgc cggacatgat tgcgctggcg cgccagcatg gggcgaaagt gctggtggat
    15541 ggcgcccagg ccgtgatgca ccatgctgtt gacgtccagg cgctggactg cgatttttac
    15601 gttttctccg gccataaact ttacgggccg accggcatcg gcattctgta tgttaaagag
    15661 gcgttgctgc aagaaatgcc gccgtgggaa gggggcgggt cgatgatctc gaccgtcagc
    15721 ctgacgcagg gaacgacatg ggcgaaagcg ccctggcgtt ttgaggcggg aacgccgaat
    15781 actggcggca tcatcggtct cggcgcggcg attgattatg tgacgtcgct gggactggat
    15841 aagattggcg attatgagca gatgctgatg cgctatgcgc tggagcaact ggcgcaggtg
    15901 cctgatatca cgctatatgg cccggcgcag cggttgggcg tcatcgcgtt taatctgggt
    15961 aaacaccacg cttacgacgt cggcagcttt cttgataatt acggtatcgc ggtacgaacg
    16021 gggcatcact gcgcaatgcc gctcatggcc tggtatggcg tgccggcaat gtgccgggct
    16081 tcgctggcga tgtataacac ccatgaagaa gtggaccgac tggtggcagg attaacgcgt
    16141 atccaccgct tattgggata acagtgaggt tttatggctg cgctaccgga taaagaaaaa
    16201 ttgctgcgta actttacgcg ttgcgctaat tgggaagaga aatatttata tattattgag
    16261 ttggggcagc gcctggcgga gttaaatccg caggatcgca atccgcaaaa tacgattcat
    16321 ggctgtcaga gccaggtgtg gatcgtgatg cggcgaaacg ccaatggcat tatcgaattg
    16381 cagggcgaca gcgacgcggc gatcgttaaa ggccttatgg cggtggtatt tattttgtac
    16441 caccagatga cggcgcagga tattgtgcat tttgatgtcc ggccatggtt cgaaaaaatg
    16501 gcgcttacgc aacacctcac accttctcgt tctcaggggc tggaagcaat gattcgcgca
    16561 attcgcgcta aggccgccac tcttagctaa actatacaga cagcgttcta cctgatgtca
    16621 aatcctttgt cggacggcga cgtcgcttta tccagagtgg acagagcgta tattttgttg
    16681 ttctgataag cgaagcgcta ccagccgtcg cagagggcat caccaggaat acaggaggtt
    16741 tggtatgaaa cgtgcgtctt tcattacgct aactattatc ggcgcgtata gcgcgttaca
    16801 ggcagcctgg gcggttgatt atccattacc gccagaaggc agccgtctta ttggtcagaa
    16861 tcaaacctat accgtacagg aaggtgataa aaacctgcag gctatcgccc ggcgttttga
    16921 tacggcggcg atgctcatcc ttgaagcgaa caatacgatt gcgccggtgc ctaagcccgg
    16981 tacgctaatt accattccct cgcagatgct attgccggat gcgcccaggg aaggcgtcat
    17041 cgtcaacctc gcggagctac ggttgtattt tacccgccgg gagaaaaccg cgttcaggtg
    17101 tatcccatcg gcatcggttt gcagggactg gaaactcccg tcatggacac ccggataggg
    17161 caaaagatcc ccaacccgac gtggacgccg acggcaggca tacgccaacg ttcgcttgag
    17221 cgggggatca cgctgccgcc ggtgatccct gccgggccaa ataacccgct gggacgctat
    17281 gcgctgcgtc tggcgcacgg taatggggaa tatctcattc atggcaccag cgcgccggat
    17341 agcgtaggtc tgcgcgtgag ttccggttgc attcgcatga acgcgccgga catcaaagcg
    17401 ttatttgcgc aggtcagaac ggggatgccg gtaaaagtga ttaaccagcc ggtgaaattc
    17461 tctgtcgagc cgaatggcat tcgttatgta gaggtacaca ggccgctatc gccggaagaa
    17521 gagcaaaacg tgcagacgat gccctatgtg ttgcctgcgg aatttaccgc gttcagaaac
    17581 gcgcaagggg tggatagtcg cctggtcgat aaggcgctat accggcgagc cgggtatcct
    17641 gtcagcgtga gcgccggaca gacgccagcg gtaaatacga ccgcagtcga atccgctcag
    17701 aacggttttg tcggggaaga ggggcaaacg cgcgcgacgc agtagccttc gcagtaaatg
    17761 acggacaaaa aaatggcgca cgatgtgcgc cattttatat catgcgtcaa atcatttaca
    17821 gatgcggaat actttgttgt ccagacgttg gttagcgcga gctgcgtcgt ctttagcagc
    17881 ctgaacgtcg gaacgcattg catttacgtc attactcagt tgatcaactt tagcgctcag
    17941 cgtctgtaca tcggaagaca actgatcgat tttagcgttg ctggaacaac ctgccagtaa
    18001 cgtggaaccc agaactactg cacctaagat cagtttgtta gtgcggttca taacaataac
    18061 cttatatttt gtgtggttat ataggtaaaa aaaatggcgc acgatgtgcg ccatttttat
    18121 tacgcaggta ctattactta cggtatttag tagcctggtt gtccagacgc tggttagcgc
    18181 gagctgcgtc gtctttagca gcctgaacgt cggaacgcat tgcgttcacg tcgttgctca
    18241 gctggtcaac tttagcgttc agagtctgaa cgtcagaaga cagctgatcg attttagcgt
    18301 tgctggagca accagccagc agagtagaac cc
//
LOCUS       DAJVSD010000068        18330 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.068, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000068 DAJVSD010000000
VERSION     DAJVSD010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 18330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18330
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.068"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            34..1323
                     /gene="uraA"
                     /locus_tag="OQP62_001931"
     CDS             34..1323
                     /gene="uraA"
                     /locus_tag="OQP62_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HCS1721498.1"
                     /translation="MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPA
                     TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFC
                     LVSFIVKKAGTGWLDVMFPPAAMGAIVAVIGLELAGVAAGMAGLLPAQGQSPDTKTII
                     ISMVTLAVTVFGSVLFRGFLAIIPILIGVLAGYALSFALGVVDTTPIAQAHWFALPTF
                     YTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLVRDPGLHRSMFANGLSTII
                     SGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQIIPLPVM
                     GGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVHIGAAELKGM
                     ALATIVGIGLSLIFKLISLLRPEEVVLEANDAESPHQ"
     gene            1394..2119
                     /gene="hda"
                     /locus_tag="OQP62_001932"
     CDS             1394..2119
                     /gene="hda"
                     /locus_tag="OQP62_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA inactivator Hda"
                     /protein_id="HCS1721499.1"
                     /translation="MSSWVEVSLNTPAQLSLPLYLPDDETFASFWPGDNASLLAALQN
                     VLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGME
                     HLSLVCIDNIECVAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLAS
                     RLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQ
                     LDHASITAQRKLTIPFVKEILKL"
     gene            complement(2146..2505)
                     /gene="arsC"
                     /locus_tag="OQP62_001933"
     CDS             complement(2146..2505)
                     /gene="arsC"
                     /locus_tag="OQP62_001933"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461430.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HCS1721500.1"
                     /translation="MTDTIKIYHNPRCSKSRDTLNLLKSNGVEPEVVLYLDTPADAAT
                     VRELLRMLGMSSARELMRQKEDLYKTLHLADSQLSEEALIQALVEHPKLMERPIVVAN
                     GQARIGRPPEQVLDILG"
     gene            complement(2545..4008)
                     /gene="bepA"
                     /locus_tag="OQP62_001934"
     CDS             complement(2545..4008)
                     /gene="bepA"
                     /locus_tag="OQP62_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-barrel assembly-enhancing protease"
                     /protein_id="HCS1721501.1"
                     /translation="MFRQLKKNLVATLIAALALGQVAPAFADPADTLPDMGTSAGSTL
                     SIGQEMQMGDFYVRQLRGSAPLINDPLLVQYINALGMRLVSHADSVKTPFHFFLINND
                     EINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQRHLARAMEDQKRSAPLT
                     WVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRAGFD
                     PQAMPSFLEKLLDQARYSTRPPEILLTHPLPESRLADARNRANQMRPVVVQSSADFYF
                     AKARALGMYNSGRNQLTSDLLDQWSKGNVRQQHAAQYGRALQAMEASKYDEARKTLQP
                     LLSAEPNNAWYLDLATDIDLGQKRANDAINRLKNARDLRVNPVLQLNLANAYLQGGQP
                     KAAETILNRYTFSHKDDGNGWDLLAQAEAALNNRDQELAARAESYALAGRLDQAISLL
                     SSASAQAKLGSQQQARYDARIDQLRQLQERFKPYTKM"
     gene            4216..5283
                     /locus_tag="OQP62_001935"
     CDS             4216..5283
                     /locus_tag="OQP62_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HCS1721502.1"
                     /translation="MLEMLMQWYRRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLV
                     AIVLAYLLEWPTARLQAIGCSRRWAASIVLILFVGILLLMAFVVMPIAWQQGIYLIRD
                     MPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRTRMLNMGDSVVKYSLASLVGLL
                     TLAVYLVLVPLMVFFLVKDKEQMLNAVRRVLPRNRGLAGQVWNEMNQQITNYIRGKVL
                     EMVVVGVATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGT
                     EFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPL
                     ATLIKAVVHAWPDGQVTDASS"
     gene            5560..6747
                     /locus_tag="OQP62_001936"
                     /pseudo
     CDS             5560..6747
                     /locus_tag="OQP62_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001667973.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            6815..8083
                     /locus_tag="OQP62_001937"
     CDS             6815..8083
                     /locus_tag="OQP62_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004090684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HCS1721503.1"
                     /translation="MTSISTLGAIAALVVAIVLILRKVSPAYGMMAGALVGGLIGGAD
                     LLQTVSLMVSGAQGIVNAVLRILAAGVLAGVLIESGAANTIAETIVRKVGETRALLAL
                     AIATLCLTAVGVFIDVAVITVAPIALSIARNAGLSKSAILLAMVGGGKAGNVMSPNPN
                     AIAASDAFHVPLTSIMLAGVVPGIVGLIIAYLLAKRLNNKGAGVADHEVTHHDDSVAR
                     PGFLVAISAPLVAIFLLSLRPFVGISIDPLIALPVGGLVGLLLMGRARHCNQYMVAGL
                     MRMAPVAIMLLGTGTLAGIIANSELKDVLIHGLTASGLPSWLLAPVSGAMMSMATAST
                     TAGTAVASGVFSPTLLELGVSALAGAAMIHAGATVLDHLPHGSFFHATGGSVNMQIHE
                     RLKLMPYETLVGLAITFISTLMFGFFGFAG"
     gene            8089..9228
                     /locus_tag="OQP62_001938"
     CDS             8089..9228
                     /locus_tag="OQP62_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000706371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HCS1721504.1"
                     /translation="MKIVIAPDSFKESLSAMAVAEAIEKGFREIYPDADYVKVPMADG
                     GEGTVQSMVEASGGRYVDQWVQGPLGQPVTARWGMLGDSDTAVIEMAAASGLHHVSPE
                     LRNPLNTTSYGTGELIVAALERGVKRIILGIGGSATNDGGAGMMQALGVILRDKQGRS
                     LSPGGEALAALASIDLSGCHPLLRKVSITVACDVNNPLCGPQGASAIFGPQKGATAEM
                     VNSLDAALENWGRHIYQATGREVINAPGAGAAGGMGAALLGLLNAELRAGVEIVVETL
                     QLEQAVKDADLVITGEGRLDSQSICGKTPIGVARVAKRHHKPVIALAGGLQHDHHVVY
                     QQGIDAALSILSHIVTLPEALHEAEYNLSLSARNVAAIWRLARQA"
     gene            complement(9275..9745)
                     /gene="bcp"
                     /locus_tag="OQP62_001939"
     CDS             complement(9275..9745)
                     /gene="bcp"
                     /locus_tag="OQP62_001939"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HCS1721505.1"
                     /translation="MNPLKAGDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTP
                     GCTVQACGLRDNMDELKKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDENHQVCEQ
                     FGVWGEKSFMGKTYDGIHRISFLIDADGKIEHVFNDFKTSNHHDVVLNWLKENA"
     gene            complement(9745..10317)
                     /locus_tag="OQP62_001940"
     CDS             complement(9745..10317)
                     /locus_tag="OQP62_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system transcriptional
                     repressor"
                     /protein_id="HCS1721506.1"
                     /translation="MTPSSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML
                     GDEFTFIMLLSGTWNAITLIESTLPLKGAELDLLIVMKRTSDRPRPAMPATVWVQVEV
                     ADSPHLIERFTALFNSHEMNIAELVSRTQPAEDDKAAQLFIQITAHSPASQNSANIEQ
                     AFKALCTELNAQGSINVVNYSQHDEQDGVK"
     gene            10463..11341
                     /gene="dapA"
                     /locus_tag="OQP62_001941"
     CDS             10463..11341
                     /gene="dapA"
                     /locus_tag="OQP62_001941"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001311023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HCS1721507.1"
                     /translation="MFTGSIVALVTPMDEKGNVSRSCLKKLIDYHVANGTSAIVSVGT
                     TGESATLSHDEHGDVVMMTLELADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLT
                     VTPYYNRPTQEGLFQHFKAIAEHTDLPQILYNVPSRTGCDMLPETVGRLAEIKNIIAI
                     KEATGNLTRVHQIKELVSDDFILLSGDDASALDFMQLGGHGVISVTANVAARDMADMC
                     KLAAEGQFAEARAINQRLMPLHNKLFVEPNPIPVKWACKALGLVATDTLRLPMTPITD
                     HGRDIVKAALQHAGLL"
     gene            11358..12392
                     /gene="bamC"
                     /locus_tag="OQP62_001942"
     CDS             11358..12392
                     /gene="bamC"
                     /locus_tag="OQP62_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamC"
                     /protein_id="HCS1721508.1"
                     /translation="MAYSVQKSRLAKVAGVSLVLLLAACSSDSRYKRQVSGDESYLDA
                     APLAELHAPAGMILPITTGDYVIPVTKGSGAVGKALDIRPPAQPLALVSGARTQFSGD
                     TATLLVENGRSSTLWPQVVSVIQAKNYPIEKRDDASQTLTTDWVSWNRLDEDEQYRGR
                     YQISVKPQGYQQAVTVKLVNLEQAGKPVADAASLQRYSTEMMNVISAGLDKTATDAAN
                     AAQNRSAATMDVQSAADDTGLPMLVVRGPFNLVWQRLPAALEKVGMKVTDSTRSQGSM
                     AVTYKPLSDSDWRDLGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDAL
                     VAVFQAAFNK"
     gene            12567..13280
                     /gene="purC"
                     /locus_tag="OQP62_001943"
     CDS             12567..13280
                     /gene="purC"
                     /locus_tag="OQP62_001943"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HCS1721509.1"
                     /translation="MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFD
                     RKGMVNNKFNHFIMTKLAEAGIPTQMERLLSDTECLVKKLEMVPVECVVRNRAAGSLV
                     KRLGVEEGMELNPPIFDLFLKNDALHDPMVNSSYCETFGWVSQENLARMKELTYKAND
                     VLKKLFDDAGLILVDFKLEFGLYKGEVVLGDEFSPDGSRLWDKETLDKMDKDRFRQSL
                     GGLIEAYEAVAHRLGVKLD"
     gene            13412..14278
                     /locus_tag="OQP62_001944"
     CDS             13412..14278
                     /locus_tag="OQP62_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HCS1721510.1"
                     /translation="MRWQGRRESNNVEDRRNRPGGPSLGGPGFRLPRGKGGIILLVVV
                     VVVAGYYGVDLTGLLTGQPVSQQQSTRSISPNDDEAAKFTSVILATTEDTWGQLFQKM
                     GRGYQQPKLVMYRGMTRTGCGAGQSVMGPFYCPADGTVYIDLSFYDVMKNKLGADGDF
                     AQGYVIAHEVGHHVQKLLGIEPKVRQLQQNASQTEVNRLSVRMELQADCFAGVWGHSM
                     QQQGVLEAGDLEEALNAAQAIGDDRLQQQGQGRVVPDSFTHGTSEQRYSWFKRGFDSG
                     DPAQCNTFGKNF"
     gene            14294..16309
                     /gene="tmcA"
                     /locus_tag="OQP62_001945"
     CDS             14294..16309
                     /gene="tmcA"
                     /locus_tag="OQP62_001945"
                     /EC_number="2.3.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cytosine(34) acetyltransferase TmcA"
                     /protein_id="HCS1721511.1"
                     /translation="MSDIDALRALTSQMTQEGIRRLLVISGDAAWCRERAEAIRAVLP
                     GDWWVAPDAPAQPRCTPQALQTLLGREFRHAIFDAWQGFDAAAFAALSGTLQAGSWLL
                     LLMPPYETWESRPDTDSLRWSDCAQPIPTPQFAQHLKRTLSRDPQTLLWRQRQPFCWP
                     SYPSRERWRPATGEPQPEQAAILSRLREMPPGVATVIAPRGRGKSALAGQFISQMAGT
                     AIVTAPAKTATDILAAFAGERFCFMAPDALLASGARADWLVVDEAAAIPAPLLLQLVS
                     RFPRILLTTTVQGYEGTGRGFLLKFCARFPQLHRFTLRQPVRWAPECPLENIVSEALI
                     FDDEAFAQAPHGGIAISAFYQQAWGKTPALPRAVYQLLSGAHYRTSPLDLRRMMDAPG
                     QHFLQATANNRVAGALWLVEEGGLSAELSQAVWCGFRRPRGNLVAQSLAAHGSDPLAA
                     TLVGRRVSRIAVHPARQREGIGQQLIACACEQAAQCDYLSVSFGYTPELWRFWQRCGF
                     VLVRMGSHREASSGCYTAMALLPLSDAGQRLAQQEHRRLRRDADILTQWNGEAIPLAA
                     LREQALNDEDWRELVGFAFAHRPLLTSLGCLHRLLQYSALPLPALRGRLEEKASDAEL
                     CARLRISGRKALLALQRAQAAQALIALDAGRTQRLRDVMPGGGDHAG"
     gene            complement(16336..16536)
                     /locus_tag="OQP62_001946"
     CDS             complement(16336..16536)
                     /locus_tag="OQP62_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpfN family protein"
                     /protein_id="HCS1721512.1"
                     /translation="MDWLAKYWWILVLVFLVGVLLNVIKDLKRIDHKKFLANKPELPP
                     HRDFNDKWDDEDDWPKKDQPKK"
     gene            complement(16564..17691)
                     /gene="dapE"
                     /locus_tag="OQP62_001947"
     CDS             complement(16564..17691)
                     /gene="dapE"
                     /locus_tag="OQP62_001947"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020078199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HCS1721513.1"
                     /translation="MSCPVIELTQQLIRRPSLSPDDVGCQALMIERLRKIGFTIEHMD
                     FGDTQNFWAWRGRGETLAFAGHTDVVPAGDVDRWINPPFEPTIRDGMLFGRGAADMKG
                     SLAAMVVAAERFVAQHPHHRGRLAFLITSDEEASAKNGTVKVVEALMARNERLDYCLV
                     GEPSSTEIVGDVVKNGRRGSLTCNLTIHGVQGHVAYPHLADNPVHRAAPFLNELVAIE
                     WDRGNDFFPATSMQIANIQAGTGSNNVIPGELFVQFNFRFSTELTDEMIKERVHALLE
                     KHQLRYTVDWWLSGQPFLTARGKLVDAVVNAIEHYNEIKPQLLTTGGTSDGRFIARMG
                     AQVVELGPVNATIHKINECVNAADLQLLARMYQRIMEQLVA"
     gene            complement(17695..18051)
                     /locus_tag="OQP62_001948"
     CDS             complement(17695..18051)
                     /locus_tag="OQP62_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HCS1721514.1"
                     /translation="MITLYGIKNCDTIKKARRWLEEHGIDYRFHDYRVDGIDLPLLNT
                     FIAELGWQPLLNTRGTTWRKLDEGHRSGITDADSAAALMVEQPAIIKRPLLCAPGKPM
                     LLGFSESRYQQFFDEV"
BASE COUNT         3878 a         4693 c         5330 g         4429 t
ORIGIN      
        1 cactaataac aaacacactt agaggaaaac actatgacgc gccgtgctat cggggtgagt
       61 gaaagaccgc cgcttttaca gacaatcccg cttagtttac agcacctttt cgccatgttt
      121 ggcgcgaccg tgctggtgcc agttctgttt catatcaatc ccgcgacggt gctgctgttt
      181 aacggtatcg gaacgttgct gtatctcttt atctgcaaag gtaaaattcc tgcctacctc
      241 ggatcgagct ttgcctttat ttccccggta ttactgttgt tgccgctggg ttatgaagtg
      301 gcgctgggcg gttttattat gtgcggcgtg ttgttctgtc tggtctcttt catcgttaaa
      361 aaagcgggca ccggctggct ggatgtgatg ttcccgcctg cggcaatggg cgcaatcgtt
      421 gccgtcatcg gtctggagct ggctggcgtc gcggcgggga tggccggatt gctgcctgcg
      481 caagggcagt cgccggacac gaaaacaatt attatctcca tggtcacgct ggcggtgacg
      541 gtgttcggct ccgtactgtt tcgcggtttc ctggcgatca ttccgatttt gatcggcgtg
      601 ctggcgggct atgcgctgtc attcgcgctg ggggtggtcg ataccacgcc gattgcccag
      661 gcgcactggt ttgcgctgcc gaccttctat acgccgcgtt ttgaatggtt tgcgatcctg
      721 acgattctgc ccgcggcgtt ggtcgtgatc gccgagcatg tcggtcatct ggtggtgacg
      781 gcgaatatcg tcaaaaaaga tttagtgcgc gatcccggtt tgcaccgctc gatgttcgct
      841 aacggactgt cgacgatcat ttccggtttc ttcggctcca cgccgaatac cacctatggg
      901 gaaaatattg gcgtcatggc gatcacccgc gtttacagta cctgggttat cggcggcgcg
      961 gcgattttcg ccattctgct ttcctgcgtc ggcaaactgg cggcggcgat tcagattatc
     1021 ccgttacccg tgatgggcgg cgtctcgctg ctgttgtacg gcgtcatcgg cgcgtcgggg
     1081 attcgcgtct tgatcgaatc gaaagtcgac tacaacaaag cgcaaaacct gatcctcacc
     1141 tcggtgattt tgatcatcgg cgttagcggc gcgaaagtgc atatcggcgc ggcagaattg
     1201 aaagggatgg cgctggcgac catcgtcggg attggcctga gcctgatttt taaactgatt
     1261 agcctgttgc gtccggaaga agtggtactg gaggcaaatg atgcggagtc tccgcatcag
     1321 taacgggttg ccgggcagcg atgctgcccg gttctatctc acgggaatta tgtggtaaac
     1381 tcagcgcgat tttatgtcat cctgggttga ggtatctctg aacacaccgg cacagctctc
     1441 tttgccactt tatcttcctg acgacgaaac tttcgcaagt ttctggccgg gggataacgc
     1501 ctctctactg gccgcgttac aaaacgtgtt gcgccaggaa catagtggat atatctacct
     1561 ttgggcgcgt gaaggcgcgg gccgcagcca tttgctgcac gccgcctgcg ctgaactgtc
     1621 gcagcgtgga gatgcggtag gctacgtccc gctcgataaa cgcacctggt tcgtgccgga
     1681 agtgctcgac ggtatggaac acctctcgct ggtgtgtatt gataacattg agtgcgtcgc
     1741 tggcgatgaa ctgtgggaga tggccatctt tgatctctat aaccgcattc tggagtccgg
     1801 taagacgcgg ttattgatca ccggcgatcg tccgccaaga cagttaaatc tgggcttacc
     1861 cgatctcgct tcccgtctgg actgggggca aatctataaa ctccagcctc tttccgatga
     1921 agacaaactt caggcgctac agttgcgtgc ccgattacgg gggtttgaac tgccggaaga
     1981 tgtcggacgg tttttactca aacgtcttga tcgcgaaatg cgcacgctgt ttatgacgct
     2041 ggatcagctc gatcatgcgt cgatcactgc ccagcgaaaa ctgacgatcc cgtttgtcaa
     2101 agagatcctg aaactgtaat acgccgcgac ggcggcgttt aacggttaac cgaggatgtc
     2161 cagcacctgc tcaggcggtc ggccaatacg cgcctgacca tttgccacta caatggggcg
     2221 ctccatcagt ttagggtgtt caaccagcgc ctggattaac gcctcttcac ttagctggct
     2281 atccgccagg tgaagcgtct tatagagatc ttctttctgg cgcatcagtt cgcgcgcgct
     2341 ggacatgccc aacatacgca gcagttcccg cacggtggcg gcatcggcgg gcgtatccag
     2401 ataaagcacc acttccggtt ccacgccgtt agatttcagc aggttcagcg tgtcgcggct
     2461 cttcgagcag cgcgggttat ggtagatttt aatcgtgtcg gtcatgagtt ctccttgtga
     2521 cgccatccgg ctaataaacg gcgattacat tttcgtgtat ggcttgaagc gttcctgtaa
     2581 ctggcgcaac tggtcgatac gcgcatcgta acgcgcctgt tgctgactac ccagttttgc
     2641 ctgggcgctg gcgctgctga gcagtgaaat tgcctgatcc agtcgtcccg ccagcgcata
     2701 actttcagcg cgtgccgcca gctcctgatc gcggttgttc agcgcggctt cggcctgagc
     2761 aagcagatcc cagccgttac cgtcatcttt atggctaaag gtgtagcgat tcagaatggt
     2821 ttccgccgct ttcggctggc ctccctggag gtacgcattg gcgaggttta actgcagcac
     2881 aggattaacg cgcagatcgc gggcattttt caggcgatta atcgcgtcgt tggctctttt
     2941 ctgccccagg tcaatatcgg tggcgaggtc aagataccag gcattgttcg gctctgcgct
     3001 taatagcggc tgcaacgttt tgcgcgcttc atcgtacttg ctcgcttcca tcgcctgcaa
     3061 cgcccggcca tattgcgccg catgttgctg acgcacgttg cctttagacc actgatccag
     3121 caggtcgctg gtgagctggt tacgtccgga attgtacatt cccagggcgc gcgctttggc
     3181 gaaataaaag tcggcggaag attgcaccac gaccgggcgc atctggttgg cacggttgcg
     3241 ggcatccgca aggcggcttt ccggtaaggg gtgagtgagc aaaatttcag gcggtcgcgt
     3301 ggagtaacgc gcctggtcga gcagtttttc gaggaaagag ggcatcgcct gtgggtcaaa
     3361 tccggcgcgt tgcagtacct gaataccaat acggtcggcc tcttgctcat tttgctgggt
     3421 gaaacttatc attccctggc gcgttcccgc cagagtaccg gttagcgccg ccataccggc
     3481 ctgtgggctg gccatggcca gcaaaatgga acccagcgcg cccacccagg taagcggcgc
     3541 gctgcgcttt tgatcttcca tcgcgcgcgc cagatggcgc tgcgtaacgt gggaaatttc
     3601 atgcgccatg actgaagcta gctggctttc gttatccgcg tagcgaaaaa gcgccgagtg
     3661 cagcaccaca ttgccgccaa agaacgcgaa cgcgttgatt tcgtcattat tgatcaagaa
     3721 aaaatggaag ggcgttttga cggagtctgc gtgcgagacc agacgcatcc ccagcgcgtt
     3781 aatgtattgc accagcagcg gatcgttgat taacggcgcg ctgccgcgta gctggcgcac
     3841 ataaaagtcg cccatttgca tctcttgtcc aatagaaagc gtgcttcctg ccgaggttcc
     3901 catatcgggc agcgtgtcgg cagggtcggc aaatgcgggc gcgacctgac cgagagccaa
     3961 tgctgcaatg agggttgcca ccaggttttt tttcaactgc ctgaacataa cctctatcct
     4021 gttgttttga gatagccctt tgaccaacgt cgtgaaatat cgttccacgc tccgacactt
     4081 cataagtgta actgtgatga gcacagactc actattttag tttcctgaat caacgataaa
     4141 aagcgaagtc ttttttgtga catttcgata caattcggca tcacaatccc gcagttgagt
     4201 tctgggaagg gttttatgct cgaaatgtta atgcaatggt atcgccgtcg cttcagcgat
     4261 ccggaggcga ttgccttgct ggtcattctg gtggctggtt ttagcatcct ctttttcttt
     4321 agcggcctgt tagcgccgct gctggtcgct atcgtactgg cctacctgct ggagtggccg
     4381 acggcgcgcc tgcaggcgat tggctgttcc cggcgctggg cagcctccat tgtccttatc
     4441 ctctttgtcg gcattctgtt attaatggcg tttgtggtga tgccgattgc ctggcagcag
     4501 ggtatttacc tgattcgtga tatgcctggt atgctgaata aactgtccga ttttgccgcg
     4561 accttgccgc gacgctatcc ggcgctgatg gatgcgggca ttattgatgc gatggcggaa
     4621 aacatgcgta cccggatgct taacatgggc gattcggtgg tgaaatattc gctggcttcg
     4681 ttagtcgggc tactgacgct ggcggtatat ctggtgctgg tgccgctgat ggtctttttc
     4741 ctggtaaaag ataaagagca gatgctgaat gccgtgcgcc gcgtgctgcc gcgtaatcgc
     4801 gggctggcgg ggcaggtgtg gaatgagatg aatcagcaga tcaccaacta tatccgcgga
     4861 aaagtgctgg agatggtagt ggtgggcgtg gcgacctggc tgggcttttt gttgtttggc
     4921 ctcaactatt cgctactgtt ggcggtactg gtgggctttt cggtcctgat cccctatatc
     4981 ggcgcctttg tggtgacaat tccggtggtg ggcgtcgcgc tgtttcagtt tggtctgggg
     5041 acggaattct ggagctgttt tgccgtttat ctgattattc aggcgctgga tggcaatttg
     5101 ctggtaccgg tacttttctc cgaagcggtg aatttgcatc cgctggtgat tattctgtca
     5161 gtggtgattt tcggcggtct gtggggattc tggggggtat ttttcgccat tccattggcg
     5221 acgctgatta aagccgttgt ccatgcctgg ccggatggtc aggtgacgga tgcctcatcc
     5281 tgagcggtct gtacaaaagt tgtaaagcgt gaacgacatc atagtgccct gccgccattt
     5341 tgcgcacgcc tgatgagggt caagcgctta gaaagccgct ctttttttta atgccgcacc
     5401 gtgttgcggc atttttattg tcggaaccta caaaattctc gctgtaaagc cgccaaaatt
     5461 tggtgactta gcctaagcat tcttctgaga aattcgttaa taagtgacat cattgatgcg
     5521 agattgcttt tttaatgtga agcgataacg aaacagggaa tgagtgtgtt gagaaaacat
     5581 tacttgaaag ggtataccgc gcggcaaatt gtacagcgag ccatgaaaat tattccttac
     5641 tcggtaaacg tcatggatga gcatggcgtc attatcgcgt ctggcgaacc ttcgcggctt
     5701 cgccagcgtc acgaaggggc cattctggcg ctgaaggaaa accgtattgt agaaattgat
     5761 tccgctaccg ccaatcagct taaaggcgtg cgatccggca ttaatcttcc catctctttt
     5821 catgaacagc ttatcggcgt ggtcggcatt accggcgaac cggaggaggt tcgcgcgtat
     5881 gccgagctgg ttaaaatggc ggcggagctg gtgatcgagc atatggtgct gatcgaacag
     5941 tgacaatggg ataaacgcta tcgcgaagag ctgatcaacc aattgatttt gcgagaaaat
     6001 tcaacagagt cgttgcgctc catggcggcc tatctgggca ttgatctggc ggttcccaga
     6061 gtggtgctga ttattgaact ttcccagccg gatcgcgaag cgctgcgcaa tgtaatggat
     6121 tatttcgaga atcacgcgcg caaccatttg gtgacgttta ccgaatttaa tgaattaatc
     6181 attattaagc ctatcacgtt aaaagaggga aagtggaata cccgccagga aatgggcgaa
     6241 ttgcagattt ttaaatcatg ggctgcatca tcgggcttta gccgtatttt ggttgggggc
     6301 tattttgccg gcgagacggg attgcaccga tctttgctca cagcgagagc cacgcaggcg
     6361 atggcgaaaa gacaaaagct gcgcagccag tacatttttt atcatgacca cgcgcttccc
     6421 gcgctgctaa gcgggctgtc tgaaagttgg caagtgcagg agttatcgcg tctgtggctg
     6481 caactggtgc aacatgacgc gaaaggcgta ttgcaacaga cgctgcggac ttggtttgaa
     6541 cataattgtg acctgacgca aacggccaaa gcattgcata ttcatgtgaa tacattgcgc
     6601 tatcgcttac agcgctgtga ggatattacg cacataaaaa tcaacgagtt aaaaagtacg
     6661 ctttggcttt atatcggtat ggagcttcag gccgaatctg tatcgtccga caagttaccg
     6721 ctgcctggtc gaatcgaaat ttgttgaaag ctccagcgga tttttaggcg gttttttcca
     6781 tactgcgcgc tccatgttaa aggaggcgca gtatatgacg tcgatatcca ccttgggagc
     6841 cattgccgca ttggttgtgg ccatcgtatt aattttaaga aaagtgtcgc cagcctacgg
     6901 catgatggcg ggcgcgctgg tcggcggttt gattggcggc gccgatcttc tgcaaaccgt
     6961 gtcgctgatg gtgtcaggcg cgcagggcat cgttaatgcc gtattgcgta ttctggccgc
     7021 aggcgtactg gcgggcgtat taattgagtc cggggcggcg aatacgattg ctgagacgat
     7081 tgtccgcaaa gtgggggaaa cccgggcatt attggcatta gccattgcca cactatgttt
     7141 gaccgccgtc ggcgtattta ttgatgtggc ggtgattacc gtcgcgccga ttgcgctgtc
     7201 gattgcgcgt aatgcaggcc tgtcaaaaag cgctattctg ctggcgatgg tcggcggcgg
     7261 caaagcgggt aacgtgatgt cacctaaccc gaacgctatt gccgcctccg atgcgtttca
     7321 tgttcctctt acctctatta tgctggcggg cgtggttccg ggcatcgttg ggcttattat
     7381 cgcctatctg ttagcgaaac ggctgaataa taaaggcgcg ggcgtcgccg atcatgaagt
     7441 gactcaccat gatgactctg tcgccaggcc cggttttctg gtggcgatta gcgcgccgct
     7501 ggtcgctatt ttcctgcttt ctctccgtcc gtttgtcggc atttccattg acccgttaat
     7561 tgccctgccc gtagggggat tggtcggtct gctgttgatg ggacgcgcgc gccactgtaa
     7621 ccagtacatg gtcgccggtc tgatgcgtat ggcgcctgtc gctattatgt tgctgggaac
     7681 cggtacgctg gccggcatta tcgctaattc cgaacttaaa gatgtcctga ttcatggcct
     7741 caccgcttcg ggattgccgt cctggctgct ggcgcccgtg tctggcgcca tgatgtcaat
     7801 ggcgacggcc tcaaccacag cgggaacggc ggtggcgtcc ggcgttttct ctcccacgtt
     7861 acttgaactt ggcgtttccg ccctggcggg agccgctatg atccatgcgg gcgccacggt
     7921 gctggaccat ctgccgcatg gcagcttttt ccacgcgacg ggcggcagcg tcaatatgca
     7981 aattcatgaa cgtttaaagc taatgccgta tgaaacgctg gtggggttag ccattacctt
     8041 tatttctact ctgatgttcg gtttctttgg ttttgcagga taatccctat gaaaattgtt
     8101 attgctcctg attcatttaa agaaagtttg tccgcaatgg cggtcgctga ggcgatagaa
     8161 aaggggttcc gcgaaattta tcctgacgcc gactacgtta aggtgcccat ggcggatggc
     8221 ggggaaggaa ccgtgcaatc aatggtggaa gctagcggcg ggcgttatgt tgaccagtgg
     8281 gtacaaggcc cgcttgggca accggtaacc gcgcgttggg gaatgctggg cgatagcgat
     8341 accgccgtga ttgaaatggc ggcggcatcc gggctgcatc acgtttcgcc tgaattgcgt
     8401 aacccgctta atactaccag ctacggcacc ggcgagttaa tcgtcgcggc gctggagcgt
     8461 ggcgtaaagc gtattattct gggaattggc ggcagtgcga cgaatgacgg cggcgcgggg
     8521 atgatgcagg cgcttggcgt tatattgcgc gataaacagg ggcgctcgct ttctccgggc
     8581 ggcgaggcgc tggcggcgct ggcgtctatc gatttgtccg gttgtcaccc attgctgcgt
     8641 aaggtatcga taaccgtggc gtgtgatgtc aacaatccgc tgtgtggtcc ccagggcgca
     8701 tcggccatct ttggcccaca aaaaggggcg acagcggaaa tggtgaactc cctggacgcg
     8761 gcgctggaaa actggggccg acatatttat caggcaacgg gacgtgaggt gattaacgct
     8821 cccggcgcgg gcgcggcagg cggaatgggc gccgcgcttt tagggttgct caatgcggaa
     8881 ttacgcgccg gcgtagagat tgtcgtggaa acgctacagc ttgagcaggc ggttaaagat
     8941 gccgatctgg tgattaccgg agaagggcgg ctggacagcc aaagtatttg cggcaagacg
     9001 ccgattggcg tcgccagagt ggcgaagcgg catcataaac cggttatcgc gctcgccggt
     9061 gggctgcaac acgatcatca cgttgtgtat cagcagggta tcgatgcggc gctatcgatt
     9121 ttgtcgcata tcgttacgct gccggaagcc ttacacgagg cggaatataa cctgagcctg
     9181 tcggcgcgca atgtggcggc gatatggcgt ctggcgcggc aagcctgacg gcgcattccc
     9241 tttccaggcc gcacatcagc gcggcctgag gcttttacgc gttttctttc agccagttca
     9301 gcaccacatc atggtgattg ctggttttaa aatcattaaa gacgtgctca atcttaccat
     9361 cagcgtcaat caaaaagctg atgcggtgaa tgccgtcata cgttttgccc ataaacgact
     9421 tttcgcccca gacgccaaac tgttcacaca cctgatggtt ttcatcggac aaaagggtaa
     9481 agttcagcag ctctttttca gcgaaacggg agagtttttc aggtttatcg gtgctgatgc
     9541 ccagcacgtc cacgcctgct tttttaagct cgtccatgtt atcgcgtaag ccgcaggcct
     9601 gcacggtaca gccgggtgtc atggcttttg ggtagaaata aaccagaacg cgctgcccct
     9661 ggaagtcggt caaatttact tgttccccgt cttgatccgg caagctaaat ttcggtgcga
     9721 tatcaccggc tttcagtgga ttcattactt aactccatcc tgttcatcat gttgtgagta
     9781 attgacgacg tttatactgc cttgcgcatt gagttctgta catagtgctt taaaggcttg
     9841 ctcaatattt gcggaatttt gcgacgccgg gctatgtgcg gtgatttgaa taaataattg
     9901 cgcagcttta tcatcttcag ccggctgcgt gcgggagacc agctccgcaa tattcatttc
     9961 atgactatta aacagcgcgg tgaatcgctc aattaaatgc ggggagtcgg cgacctcaac
    10021 ctgaacccat accgtcgcgg gcattgccgg gcgggggcgg tcggacgtcc gtttcatcac
    10081 aatcagcaga tccagctccg cgccttttaa cggcaatgtc gattcaatca aggtaatcgc
    10141 gttccacgtg ccggacaaca gcataataaa cgtgaattca tcgcccagca tcgccagtcg
    10201 gctgtcttcg atattacagc cgcaactgct gacatggcga gtaatggtat tcacaatacc
    10261 gggcctgtcg gcgcccagcg cagtgataac caaatagtgt tgtgatgacg gtgtcaaacc
    10321 agttattcct ttgagcggtg aggtaatctt aaggaaacca taaaaaaaac ctgcatacaa
    10381 caatcagaac ggctttggtc gcttgctttt attgtcatac caaacgtacc attgagggac
    10441 ttgtttgcac agaggatggc ccatgttcac gggaagtatt gtcgcgcttg ttacgccgat
    10501 ggatgagaaa ggtaacgtca gtaggtcttg cctgaaaaaa ctcattgatt atcatgtcgc
    10561 caacggtacc tcggcgattg tttcggttgg caccaccggc gagtctgcca cgctaagcca
    10621 tgatgaacat ggcgatgtcg tgatgatgac gctggaactg gctgacggac gtattccggt
    10681 tatcgctggc acgggcgcaa acgcgaccgc ggaagcgatt agcctgacgc agcgttttaa
    10741 cgatagcggc attgttggct gcctgacggt aacgccgtac tacaatcgcc ccacgcagga
    10801 aggtttgttc cagcatttca aagccatcgc ggaacacact gacttgccgc aaattctgta
    10861 taatgtgccg tcccgtaccg gttgcgacat gttgccggaa accgtgggtc gtctggcgga
    10921 aataaaaaat attatcgcta tcaaagaggc gacagggaac ttaacccgcg ttcaccagat
    10981 caaagagctg gtttcagacg attttattct gcttagcggc gatgacgcgt ccgcgctgga
    11041 ctttatgcaa ctgggtggtc atggcgtgat ttccgttact gctaacgtag cggcgcgcga
    11101 tatggctgac atgtgcaaac tggcggcgga agggcaattt gccgaggcgc gcgctatcaa
    11161 ccagcgtctg atgccgttac acaacaaact atttgtcgaa cccaatccta tcccggtgaa
    11221 atgggcatgt aaggcattgg gtcttgtggc gaccgacacg ctgcgcctgc caatgacgcc
    11281 tatcaccgac catggtcgtg acatcgtcaa agcagcgctt cagcatgctg gcctgctgta
    11341 aagtttaggg agatttgatg gcttactcag tacaaaagtc gcgcctggcg aaggttgcgg
    11401 gtgtttcgct tgttttgctg ctcgctgcct gtagttccga ttcgcgctac aagcgccagg
    11461 taagcggcga tgaatcctat ctggatgccg cgccgcttgc tgaacttcac gccccggcag
    11521 gaatgattct gccgataacg accggcgact acgttattcc ggtcacgaag gggagcggcg
    11581 cggttggtaa ggcgttggat atccgtccgc cggcgcagcc gttagcgtta gtgagcggcg
    11641 cgcgtaccca gttctctggc gataccgcta cgctattggt ggaaaatggc cgtagcagca
    11701 cgctgtggcc gcaagtcgtc agcgtgattc aggcgaaaaa ttatccgatt gaaaaacgtg
    11761 acgatgccag ccagaccctg acgaccgatt gggtgagctg gaaccgcctg gatgaagacg
    11821 aacagtatcg cggacgttat caaatctcgg tgaagccgca gggctatcag caggcggtaa
    11881 cggtaaaact ggttaatctg gaacaggctg gcaagccggt cgctgatgcg gcgtcgctgc
    11941 agcgctatag cactgaaatg atgaacgtca tttccgccgg tctggataag accgctacgg
    12001 atgcggcaaa tgccgcgcag aaccgttccg ccgcaacgat ggatgtgcag agcgccgctg
    12061 atgataccgg tttacctatg ctggtcgttc gcggtccgtt caacctcgtg tggcagcgtc
    12121 tcccggccgc gctggaaaaa gtgggcatga aagtcaccga cagcactcgc tctcagggca
    12181 gcatggcggt aacgtacaaa ccgttgtctg acagcgactg gcgggatctg ggcgctagcg
    12241 acccgggcct ggcatccgga gactataaat tgcaggtcgg cgatttagat aaccgcagca
    12301 gcttgcagtt tatcgatcct aaggggcata ctctgacgca aagccagaac gacgcgctgg
    12361 ttgccgtctt ccaggctgcg ttcaacaagt aatttaacag ggctggagca atccggccct
    12421 tttttctgat aagatacgca aacgtgtgcg tcggtacaaa aacgcgattt aaccgctatt
    12481 tcgcaccaca attacaggcc ggcgtctctg gcaggcgtag caggaaatga atacttatcg
    12541 ttaattcaca cccaggagtg ttaaagatgc aaaagcaagc tgagttgtat cgtggtaaag
    12601 cgaaaaccgt atacagcacg gaaaacccgg acctgttggt gctcgaattc cgcaatgata
    12661 cgtcagcagg ggatggcgcg cgcattgaac agtttgatcg caaaggcatg gtaaataaca
    12721 aattcaacca tttcattatg accaaactgg ccgaggcggg catcccgacc cagatggaac
    12781 gtttgctgtc tgataccgag tgtctggtga agaagctgga gatggtgccg gttgaatgtg
    12841 tggtgcgcaa ccgtgcggca gggtcgctgg tcaagcgtct gggcgtggaa gaaggcatgg
    12901 agcttaaccc gccgatcttc gatctgttcc tgaaaaacga cgcgctgcac gacccgatgg
    12961 tgaatagttc ctactgtgaa actttcgggt gggtaagcca ggaaaatctg gcgcgtatga
    13021 aagagctaac ctacaaagcc aacgacgtac taaaaaaact gtttgatgac gcgggtctta
    13081 tcctggtgga tttcaaactg gagtttggcc tgtataaagg cgaagtggtg ctgggcgatg
    13141 agttttcacc ggacggtagc cgcctgtggg ataaagagac gctggacaaa atggacaaag
    13201 accgcttccg ccagagcctg ggcggtctga ttgaagccta tgaagccgtt gcgcatcgcc
    13261 tgggcgtgaa attagattaa ttccgcttct gaccgggggg gcaaccgctc tccggtatca
    13321 tcctttcctc attctgatag cgtttacctg tggtaatcct gcgcctgacc gcctacgatc
    13381 atctgtataa caaagagaga atgaggtgat tatgcgctgg caagggcgtc gtgaaagtaa
    13441 caatgtagag gacagacgta atcggccagg cggcccctcg ctgggtggcc ctggctttcg
    13501 tcttccgcgc gggaaaggcg gcatcattct gttggtggtg gtggtggtgg tcgcagggta
    13561 ctatggggtg gatttaaccg gtctgttgac tggtcagccg gtttcgcagc agcagtcgac
    13621 gcgttcgata agccccaatg atgatgaagc ggcaaaattt acctcggtga ttctggcgac
    13681 gaccgaagat acctgggggc aactctttca aaaaatgggg cgcggctatc agcagccaaa
    13741 actggtgatg taccgtggta tgacgcgtac cggctgtggt gcgggtcagt ccgtgatggg
    13801 gccgttttac tgcccggcgg acggcaccgt ctatatcgat ctctcatttt acgatgttat
    13861 gaaaaataag ctgggcgcgg acggtgattt tgcccagggt tatgttatcg cccacgaagt
    13921 cggccaccac gtacaaaaac tgttaggcat tgagccgaaa gtacgccagt tacaacaaaa
    13981 cgcgtcgcaa acggaggtga atcgcctttc ggtgcgcatg gagctacagg cggattgctt
    14041 tgccggcgtg tggggacaca gtatgcagca gcaaggcgta ctggaggcgg gcgatctgga
    14101 agaggcgctc aatgccgcac aggctatcgg cgacgatcgc ttacagcaac aggggcaggg
    14161 gcgcgtggtg ccggatagtt ttacccacgg cacctcagaa cagcgctaca gctggtttaa
    14221 gcgtggattt gacagcggtg acccggcgca atgtaatacg tttggtaaaa acttttgata
    14281 aactggggca gggatgtctg atatcgatgc gctacgggcg ttaacgtcgc aaatgacaca
    14341 ggaaggcatt cgccgtttac tggtcatcag cggcgatgcg gcgtggtgcc gggaacgggc
    14401 cgaggcgata cgcgctgtat tgcccggtga ctggtgggtc gcgcctgacg cgcccgccca
    14461 gccgcgctgt acgccacagg cgttacaaac gctgctgggc cgtgaatttc gtcatgcgat
    14521 atttgatgcc tggcagggct ttgacgccgc agcgtttgcc gccctgagcg ggaccttgca
    14581 ggccggaagt tggctgcttc tgctgatgcc gccgtatgag acgtgggaaa gccggcctga
    14641 taccgattca ctgcgctgga gcgactgcgc gcagcctatc cccacaccgc agtttgcaca
    14701 gcatcttaaa cggactcttt cccgcgatcc gcaaacgctg ctttggcgac agcgccagcc
    14761 gttttgctgg ccatcttatc cttcccgcga acgctggcga cccgccaccg gcgagccgca
    14821 gccggagcag gcggctatct tatcgcgttt acgtgaaatg ccgcccggcg tggcgacggt
    14881 gattgccccc cgtgggcgcg gcaaatcggc gctggccggg caattcatct cacagatggc
    14941 gggcacggct atcgtgaccg caccggcgaa aacggcaacg gatatcctgg cagcgtttgc
    15001 cggtgagcgg ttctgcttta tggcgccgga tgcgctgctg gcgagcgggg caagagccga
    15061 ctggctggtg gttgacgagg cggcggcaat ccccgcgccg ctgctgctgc aactggtttc
    15121 gcgctttccc cgcatactac tcaccaccac cgttcagggc tacgaaggca ccggacgcgg
    15181 ttttttactt aagttttgcg cccgttttcc gcagcttcac cgctttacgc ttcgtcagcc
    15241 tgtccgctgg gcgccagaat gcccgctgga aaatatcgtc agcgaggcgc tgatattcga
    15301 cgatgaagcg tttgcgcagg cgccgcatgg cgggatagca atctcggcat tttaccagca
    15361 ggcctggggg aagacgcccg cgttgccgag ggctgtgtat cagttactgt cgggggcgca
    15421 ctatcgtact tcgccgttgg atctgcgccg aatgatggat gcgccaggac agcatttctt
    15481 gcaggctacg gcgaataacc gtgtggcggg cgccctctgg ctggtcgaag agggcgggtt
    15541 atccgcagag ctcagtcagg ctgtatggtg cggtttccgg cgtccgcgtg gaaatctggt
    15601 ggcgcagtcg ctggcggcgc acggtagcga ccctttagcc gcgacgctgg tcgggcgtcg
    15661 cgtaagccgt atcgcggtgc accccgcccg tcagcgcgaa ggcatcggtc agcagttgat
    15721 tgcctgcgcg tgcgagcagg cggcgcagtg tgattatctt tccgtcagct tcggctatac
    15781 gccggagctg tggcgcttct ggcaacgctg cggctttgtg ctggtacgga tgggcagcca
    15841 tcgggaggcg agcagcggtt gctatacggc gatggcgtta ttgccgctga gcgacgcggg
    15901 acaacggctg gcgcaacagg aacaccgacg tttgcgccgc gatgcggata tcctgacgca
    15961 gtggaacggc gaggcgatac cgctggcggc gttgcgcgaa caggcgctta atgatgaaga
    16021 ctggcgtgag ctggtcggtt ttgcgttcgc gcaccgcccg ctactgacat cgttaggttg
    16081 cctgcatcgt ttactgcaat acagcgcatt gccattgccg gcgctgagag ggcggctgga
    16141 ggaaaaagcc agcgatgccg aactgtgcgc ccggctacgc atttcaggcc gtaaagctct
    16201 gctggcgttg cagcgtgcgc aggcggcgca ggcgctaatt gcgttggatg ccggacgaac
    16261 gcagcgtttg cgcgacgtaa tgccaggcgg tggggaccat gccggatagc gatacctgtc
    16321 cggcatgtta tccggttact ttttcggctg atctttcttc ggccagtcgt cttcatcgtc
    16381 ccacttatcg ttaaaatcgc gatgcggggg cagctcaggt ttgttggcaa ggaatttctt
    16441 atggtcgatg cgtttgagat ctttgatcac attcagcagt acgcctacca gaaacaccaa
    16501 taccagaatc caccaatatt ttgccagcca gtccatgctt atttcctctt accggaacgc
    16561 tcatcaggcg acgagctgtt ccataatacg ttgatacata cgggccagta gctggagatc
    16621 ggcggcattc acacattcgt taattttatg aatggtggcg ttcaccggcc ccagttctac
    16681 cacctgcgct cccatacggg cgataaaacg tccgtcggac gtaccgcccg tcgtcagtaa
    16741 ttgcggttta atttcattat agtgctcaat ggcgtttacc accgcgtcca ccagctttcc
    16801 gcgtgcggtc aggaacggct gaccggaaag ccaccagtct acggtatagc gtagctgatg
    16861 cttctcaagc agcgcatgta cccgttcttt gatcatctca tcggtcagct ccgtgctaaa
    16921 acggaagtta aactgcacga acagttcgcc gggaatgaca ttattgctgc cggtgcctgc
    16981 ctggatattg gctatctgca tactggtggc cgggaaaaag tcattgcccc gatcccactc
    17041 gatagcgacc agttcattga gaaaaggcgc ggcgcgatga acagggttat ccgccagatg
    17101 cggataggca acgtgcccct gaacgccatg aatagtgagg ttacaggtga gggaaccgcg
    17161 acgcccgttt ttgacgacat cgcccacaat ttcagtactg gaaggttcgc cgaccagaca
    17221 gtaatccagc cgctcgttac gggccatcag cgcttcaacc acctttacgg tgccattttt
    17281 tgcgctggct tcttcatcag aggtaatcaa aaatgcgagg cggccccggt gatgaggatg
    17341 ctgtgcaaca aaacgttcag cagccaccac catggccgcc agtgaacctt tcatatccgc
    17401 cgcgccgcga ccgaacaaca ttccgtcgcg aatcgtaggt tcaaacggcg gattgatcca
    17461 gcgatcgaca tcgccagccg gtacgacgtc agtatgcccg gcgaacgcca gcgtttcgcc
    17521 acgcccacgc catgcccaaa aattttgcgt gtcgccaaaa tccatatgct caatggtaaa
    17581 accgatttta cgcaggcgtt caatcattaa tgcctgacag cctacgtcat ccggactcag
    17641 ggaggggcga cgaataagtt gctgtgtcag ctcaataacc gggcacgaca tagactacac
    17701 ctcatcaaaa aactgctgat aacgggattc actgaaacca agcagcatag gcttcccggg
    17761 cgcgcagagc aatgggcgtt tgatgattgc cggctgttca accatgagag cagcggcgga
    17821 gtcggcatcg gtaatcccgc tgcggtggcc ttcatccagt ttgcgccatg ttgtgccgcg
    17881 cgtattcagt aaaggctgcc agccgagttc ggcaataaag gtattaagaa gagggaggtc
    17941 tatgccatcc acacggtaat cgtgaaaacg ataatcaatg ccatgctcct ccagccaacg
    18001 gcgcgctttt ttgatcgtgt cgcaattctt aatgccatag agggtaatca tattgaatcc
    18061 tttaacgcga aattcgaata aataatcaat agtatcgtct gcgggataat aagtgtggct
    18121 gttaatggtt atttatccag cgctgatcgg caatcaatat aacattgttg agtgaatgtg
    18181 aataatgatt ccaaaacgtt ccagatgtgg cttgtttata attcgtgagg aaaatcctat
    18241 tttgcgcaca tgcaattgat tgttttttaa cccgatttga taaagtagta gaaaaggtat
    18301 taatgttgct aaatattgca gtaagtcaca
//
LOCUS       DAJVSD010000069        18271 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.069, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000069 DAJVSD010000000
VERSION     DAJVSD010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 18271)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18271)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18271
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.069"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..268
                     /locus_tag="OQP62_001949"
     CDS             <1..268
                     /locus_tag="OQP62_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cobyrinic acid a,c-diamide synthase"
                     /protein_id="HCS1721515.1"
                     /translation="GYCEAQAMQPTLLAVPGEIVRGHEFHYSDFIPETPAVMACRKVR
                     DGRVLQEWTGGWQTGNTFASYLHVHFAQRPEMLQHWLAAARRVL"
     gene            265..1224
                     /locus_tag="OQP62_001950"
     CDS             265..1224
                     /locus_tag="OQP62_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HCS1721516.1"
                     /translation="MTILAWCIAWVLDFIIGDPQHWPHPVRWIGRLITFVQRIVRRYC
                     PGDKALRIGGGVMWVVVVGVTWGVAWGVLALAQRIHPWFGWSVEVWMIFTTLAGRSLA
                     RAAQEVERPLRENDLAESRIKLSWIVGRDTSQLQPAQIYRAVVETVAENTVDGIIAPL
                     FFLFLGGAPLAMAYKAVNTLDSMVGYKHEKYRAIGMVSARMDDVANYLPARLSWLLLG
                     IAAGLCRLSGWRALRIGWRDRYNHSSPNCAWSEACVAGALGIQLGGPNNYFGERVDKP
                     WIGDAQRGISVDDISRTIRLMWVASTLALALFIAARCGLSGVA"
     gene            1235..1714
                     /locus_tag="OQP62_001951"
     CDS             1235..1714
                     /locus_tag="OQP62_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-8X methylmutase"
                     /protein_id="HCS1721517.1"
                     /translation="MHYIQQPQTIEANSFTIISDIIRETRPDYRFASPLHEAIIKRVI
                     HTTADFDWLDILWFSADALEQLCDALRQPCIIYTDTTMALSGINKRLLATFGGECRCY
                     ISDPRVVGVPVGFVGAAESKEALTHSHFPAVAALGRKGGSNVAAAIVNALLYHLREA"
     gene            1714..2853
                     /locus_tag="OQP62_001952"
     CDS             1714..2853
                     /locus_tag="OQP62_001952"
                     /EC_number="2.1.1.195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-5B (C(1))-methyltransferase"
                     /protein_id="HCS1721518.1"
                     /translation="MSELSFDAPVWRHGKALRKGYTTGSCATAAAKVAELMVLRQHLI
                     HQVSIVTPSGVTLCLNVESPHIEGQQAIAAIRKDGGDDVDATHGMLIFARVTLNDSGE
                     ITLTGGEGIGTVTRKGVGLPLGSAAINRTPRHTIESAVREAIGPARGADVEIFAPEGE
                     VRAQKTYNSRLGILGGISIIGTTGIVTPMSEESWKRSLSLELEIKRASGLTRVILVPG
                     NHGERFVREQMGVDTQAVVTMSNFVGYMIEEAVRLGFCQIVLVGHPGKLIKIAAGIFH
                     THSHIADARMETLVAHLALLGAPLELLTLVGDCDTTEAAMEHIEAYGFGHIYNHLARR
                     ICLRVMQMLRFTKTPPVCDAILFSFDNHILGSNRPVDEIAKELQC"
     gene            2847..3452
                     /locus_tag="OQP62_001953"
     CDS             2847..3452
                     /locus_tag="OQP62_001953"
                     /EC_number="2.1.1.289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-7 (C(5))-methyltransferase"
                     /protein_id="HCS1721519.1"
                     /translation="MLTVVGMGPAGRHLMTPAALEAIDHADALAGGKRHLAQFPAFGG
                     ERFTLGADIGALLSWIAARRDKGIVVLASGDPLFYGIGTRLVAHFGIEQVRIIPGISA
                     VQYLCAQAGIDMNDMWLTSSHGRCVSFEQLANHRKVAMVTDARCGPREIARELVARGK
                     GHRLMVIGENLAMENERIHWLPVSAVNADYEMNAVVILDER"
     gene            3442..4020
                     /locus_tag="OQP62_001954"
     CDS             3442..4020
                     /locus_tag="OQP62_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating cobalt-precorrin-6B
                     (C(15))-methyltransferase"
                     /protein_id="HCS1721520.1"
                     /translation="MKDELFLRGENVPMTKEAVRALALSKLELHRASHLIDVGAGTGS
                     VSIEAALQFPSLQVTAIERNPAALRLLDENRQRFACGNIDILPGEAPMTITGKADAVF
                     MGGSGGHLTALIDWAMGHLHPGGRLVMTFILQENLHSALAHLVHIGACRMDCVQLQLS
                     SLTPLGAGHYFKPNNPVFVIACQKEENHVRDI"
     gene            4004..4777
                     /locus_tag="OQP62_001955"
     CDS             4004..4777
                     /locus_tag="OQP62_001955"
                     /EC_number="2.1.1.271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-4 methyltransferase"
                     /protein_id="HCS1721521.1"
                     /translation="MSETFDPRCVWFVGAGPGDRELITLKGYRLLQQAQVVIYAGSLI
                     NTELLDYCPAQAERYDSAELHLEQIIELMAAGVKAGKTVVRLQTGDVSLYGSVREQGE
                     ELTRRGIDWQVVPGVSAFLGAAAELGVEYTVPEVSQSLIITRLEGRTPVPAREQLEAF
                     ASHQTSMAIYLSVQRIHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADISDK
                     VRDAGIRKTALILVGNFLGKEYHYSRLYAADFSHEYRKA"
     gene            4758..5813
                     /gene="cbiG"
                     /locus_tag="OQP62_001956"
     CDS             4758..5813
                     /gene="cbiG"
                     /locus_tag="OQP62_001956"
                     /EC_number="3.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin 5A hydrolase"
                     /protein_id="HCS1721522.1"
                     /translation="MNTVKPESIALFCLTPGGVALAKRLAAMLPLTCFTSEKLREEGF
                     IPFDGGFANTARQAFTTYTALIFIGATGIAVRVLAPLVNDKFSDPAVVVIDERGQHVI
                     SLLSGHAGGANALTRYLAGMLGADPVITTATDVNEMSALDTLAFQLNARMSDLRTAVK
                     TVNQMLVSHQRVGLWWDAELTEEIGQCDIRGFIPVDDLQRLPELDALICVSLRNDLPE
                     LPVLHWKLVPQRVVAGIGCRRDTPFPLLATLLARQLEAQKLDPLALKAIGSVTLKKGE
                     PGLIQLASCCRVPFKTFTAEALREFEHHFPGSGFVRKTVGVGSVSGPAAWLLSQGQLL
                     GETLREQGVTITLGVSH"
     gene            5813..6538
                     /locus_tag="OQP62_001957"
     CDS             5813..6538
                     /locus_tag="OQP62_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-3B C(17)-methyltransferase"
                     /protein_id="HCS1721523.1"
                     /translation="MLSVIGIGPGSQAMMTMEAIEALQAAEIVVGYKTYTHLVKAFTG
                     DKQVIKTGMCKEIERCQAAIELAQAGHNVALISSGDAGIYGMAGLVLELVSKQKLDVE
                     VRLIPGMTASIAAASLLGAPLMHDFCHISLSDLLTPWPVIEKRIVAAGEADFVICFYN
                     PRSRGREGHLARAFDLLAASKSAQTPVGVVKSAGRKKEEKWLTTLGDMDFEPVDMTSL
                     VIVGNKTTYVQDGLMITPRGYTL"
     gene            6535..7274
                     /locus_tag="OQP62_001958"
                     /pseudo
     CDS             6535..7274
                     /locus_tag="OQP62_001958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460971.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-6A reductase"
     gene            7393..8121
                     /locus_tag="OQP62_001959"
     CDS             7393..8121
                     /locus_tag="OQP62_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001726449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sirohydrochlorin cobaltochelatase"
                     /protein_id="HCS1721524.1"
                     /translation="MACERDLAESCPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQAL
                     QKLAAQGYQDVAIQSLHIINGDEYEKIVREVQILRPLFTRLTLGVPLLSSHNDYVQLM
                     QALRQQMPSLRQTEKVVFMGHGASHHAFAAYACLDHMMTAQRFPARVGAVESYPEVDI
                     LIDSLRDEGVTGIHLMPLMLVAGDHAINDMASDDGDSWKMRFNAAGIPATPWLSGLGE
                     NPAIRAMFVAHLHQALNMAVEEAA"
     gene            8118..8831
                     /locus_tag="OQP62_001960"
     CDS             8118..8831
                     /locus_tag="OQP62_001960"
                     /EC_number="2.1.1.151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-factor II C(20)-methyltransferase"
                     /protein_id="HCS1721525.1"
                     /translation="MNGKLYALSTGPGAPDLITVRAARILGSLDILYAPAGRKGGDSL
                     ALSIVRDYLGEQTEVRCCHFPMSADGAEKEAVWNEVAAALTAEVEAGKQVGFITLGDA
                     MLFSTWIFLLQRIGCPEWLEIVPGVTSFAAIAARAKMPLAIERQSLAVISCTAPEAEI
                     AQALQQHDSLVLMKVYGRFARIKALLAQAGLLECALMMSEATLPGEQCWRHLHEVNDD
                     RALPYFSTILVNKQWEYAE"
     gene            8828..9564
                     /gene="cbiM"
                     /locus_tag="OQP62_001961"
                     /pseudo
     CDS             8828..9564
                     /gene="cbiM"
                     /locus_tag="OQP62_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460968.3"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt ECF transporter S component CbiM"
     gene            9566..9847
                     /locus_tag="OQP62_001962"
     CDS             9566..9847
                     /locus_tag="OQP62_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     substrate-binding protein"
                     /protein_id="HCS1721526.1"
                     /translation="MKKTLMLLAMVVALVILPFFINHGGEYGGSDGEAESQIQALAPQ
                     YKPWFQPLYEPASGEIESLLFTLQGSLGAAVIFYILGYCKGKQRRDDRA"
     gene            9834..10511
                     /locus_tag="OQP62_001963"
     CDS             9834..10511
                     /locus_tag="OQP62_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     transmembrane protein"
                     /protein_id="HCS1721527.1"
                     /translation="MTGLDRLSYQSRWAHVAPQRKFLLWLAMMILAFVLPPVGQGIEL
                     LIIAGLSCWLLRISLWRWCRWMAIPFGFLLVGVITIIFSISREPQMLLAGISVGPYWI
                     GITRAGVVTANETFWRSLTALSATLWLVMNLPFPQLISLLKRAHIPRLLTEQILLTWR
                     FLFILLDEAVAIRRAQTLRFGYCSLPNGYRSLAMLTGLLFTRVLMRYQQMTTTLDIKL
                     YQGDFHL"
     gene            10520..11335
                     /locus_tag="OQP62_001964"
     CDS             10520..11335
                     /locus_tag="OQP62_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     ATP-binding protein"
                     /protein_id="HCS1721528.1"
                     /translation="MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLF
                     MNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFS
                     LRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL
                     DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILMHG
                     APGEVFACTEAMEHAGLTQPWLVKLHTQLGLPLCKTETEFFHRMQKCAFREAS"
     gene            11332..12852
                     /locus_tag="OQP62_001965"
     CDS             11332..12852
                     /locus_tag="OQP62_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobyric acid synthase"
                     /protein_id="HCS1721529.1"
                     /translation="MTQAVMLQGTASDVGKSVLVAGLCRIFYQDGLRTAPFKSQNMAL
                     NSGITPDGKEMGRAQIFQAEAAGITPDVRMNPVLLKPTSDRQAQVVLMGKVATNMDAV
                     SYHDYKPRLREQILAVYNSLAQEYDVIVLEGAGSPAEINLRDRDIVNMGMAEMAQCPV
                     ILVADIDRGGVFAAIYGTLALLHKQERDRVKGVIINKFRGDVALLYSGIEQIESLTGV
                     PVLGVMPWLDVDLEDEDGVALQNDKYRGNAPRDITIAIVQLPHISNFTDFNALAAQPD
                     VRIRYIRRPEALTDADLVILPGSKNTLSDLAWLRESGMADAVLQTHRQGVPVMGICGG
                     YQMLGDTIVDEVESGLGTQPGLGLLNTITRFAQDKTTTQVNATMSGELPGWLAAAAGL
                     PVRGYEIHMGETVLQEGCCTAMTLQKNGCSVADGAVTADGLAFGTYLHGLFDSDAFTR
                     AVVNGLRARKGLAPWETTFCYAEHKARQFDLLAEAMRQHIDIDKIYTIMQQHQEPV"
     gene            12849..13394
                     /gene="cobU"
                     /locus_tag="OQP62_001966"
     CDS             12849..13394
                     /gene="cobU"
                     /locus_tag="OQP62_001966"
                     /EC_number="2.7.1.156"
                     /EC_number="2.7.7.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adenosylcobinamide
                     kinase/adenosylcobinamide-phosphate guanylyltransferase"
                     /protein_id="HCS1721530.1"
                     /translation="MMILVTGGARSGKSRHAEALISDAPQVLYIATSQILDDEMAARI
                     QHHKDGRPAHWRTAECWRHLDTLITADLAPDDAILLECITTMVTNLLFALGGENDPEQ
                     WDYAAMERAIDDEIQILIAACQRCPAKVVLVTNEVGMGIVPENRLARHFRDIAGRVNQ
                     RLAAAADEVWLVVSGIGVKIK"
     gene            13391..14134
                     /gene="cobS"
                     /locus_tag="OQP62_001967"
     CDS             13391..14134
                     /gene="cobS"
                     /locus_tag="OQP62_001967"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HCS1721531.1"
                     /translation="MSKLFWAMLAFISRLPVPSRWSQGLDFEQYSRGIVMFPFIGLIL
                     GGISGLIFILLQPWCGIPLAALFCILALALLTGGFHLDGLADTCDGIFSARRRERMLE
                     IMRDSRLGTHGGLALIFVLLAKILVVSELALRGTPMLAALAAACAAGRGSAVLLMYRH
                     RYAREEGLGNVFIGKVSGRQTCITLGLAVIVATVLLLGMQGLATMVVTLAAIFILGQL
                     LKRTLGGQTGDTLGAAIELGELIFLLALL"
     gene            14161..15231
                     /gene="cobT"
                     /locus_tag="OQP62_001968"
     CDS             14161..15231
                     /gene="cobT"
                     /locus_tag="OQP62_001968"
                     /EC_number="2.4.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide--dimethylbenzimidazole
                     phosphoribosyltransferase"
                     /protein_id="HCS1721532.1"
                     /translation="MQTLHALFRDIPAPDAEAMARAQQHIDGLLKPPGSLGRLETLAV
                     QLAGMPGLNGTPQVGEKAVLVMCADHGVWDEGVAVSPKIVTAIQAANMTQGTTGVCVL
                     AAQAGAKVHVIDVGIDAEPIPGVVDMRVARGCGNIAVGPAMSRSQAEALLLEVSRYTC
                     DLAKRGVTLFGVGELGMANTTPAAAMVSVFTGSDAKEVVGIGANLPPSRIDNKVDVVR
                     RAIAINQPNPRDGIDVLSKVGGFDLVGMTGVMLGAARCGLPVLLDGFLSYSAALAACQ
                     IAPAVRPYLIPSHFSAEKGARIALAHLSMEPYLHMAMRLGEGSGAALAMPIVEAACAM
                     FHNMGELAASNIVLPEGNANAT"
     gene            15309..16238
                     /gene="ldtA"
                     /locus_tag="OQP62_001969"
     CDS             15309..16238
                     /gene="ldtA"
                     /locus_tag="OQP62_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HCS1721533.1"
                     /translation="MRRITPFFPFFVLLVSHFSLAISYPLPPEGSRLVGQPVTIAVPQ
                     NNTQPLESFAARYGQGLSNMLEANPGVDVFLPQSGSTLVVPQQLILPDTVREGIVVNV
                     AEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVWVPTANTRREYAK
                     EGKTLPAMVPAGPDNPMGLYAIYIGRLYATHGTNANFGIGLRVSQGCIRLRNDDIKYL
                     FDHVPVGTRVQIIDRPVKFSVEPDGSRWLEVHEPLSRNRAEFESDKKVPLPVTPVLRT
                     FIKGDDVDTSRVNEVLERRSGMPVNISAGRSGL"
     gene            complement(16464..16539)
                     /locus_tag="OQP62_001970"
     tRNA            complement(16464..16539)
                     /locus_tag="OQP62_001970"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(16504..16506),aa:Asn,seq:gtt)
     gene            16699..18156
                     /locus_tag="OQP62_001971"
     CDS             16699..18156
                     /locus_tag="OQP62_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmmdR/YeeO family multidrug/toxin efflux MATE
                     transporter"
                     /protein_id="HCS1721534.1"
                     /translation="MWFQLSSLRSILNVSTALRQVVVRTPWYAKRKSYKVLFWREITP
                     LAIPIFLENTCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVV
                     VAFSLGKRDRRRARAAARQSLVIMTLFAVVLAVVIHYFGSEIINIVAGEATPEVKGLA
                     LTYLELTVLSYPAAAIALIGSGALRGAGNTKIPLMINGGMNILNIVISSILIYGAFSW
                     QGLGFAGAGLGLTISRYIGAVAIIWVLMIGFNPALRIPLKSYLKPLNFGIIWEVMGIG
                     IPASIESVLFNGGKLLTQMFVAGMGTNVIAGNFIAFSVAALINLPGNALGSASTIITG
                     KRLGTGQIGQAERQLRHVFWMSTIVLTAIAWGTAPFAGLFASFYTQEQDVKEVVKVLL
                     WLNAAFMPIWAAAWVLPSGFKGARDVRFAMWVSMLGMWGCRVVAGYTLGIVLGMGVVG
                     VWLGMFLDWAVRGALFYWRLISGRWLWRYPRVKRE"
BASE COUNT         3735 a         4535 c         5610 g         4391 t
ORIGIN      
        1 tggttactgt gaggcgcagg ctatgcagcc aacgctattg gcggtgcctg gcgagatagt
       61 gcgcggccat gaatttcact actcagattt tatccccgaa acacccgccg ttatggcctg
      121 tcgtaaggtt cgcgatggcc gcgtgttaca agaatggact ggcggctggc agacaggcaa
      181 cacgtttgcc agctatctgc acgtccattt cgcccagcgt ccggaaatgt tgcagcactg
      241 gctggcggcg gcgaggcgag tattatgacg atccttgcct ggtgtatcgc ctgggtgctg
      301 gattttatca tcggcgaccc tcaacactgg ccccatccgg tacgctggat aggccgatta
      361 attacgtttg tgcagcgtat tgtgcgtcgc tattgtcccg gcgataaagc gctgcggatt
      421 ggcggcggcg taatgtgggt tgtggttgtc ggggtgacct ggggcgtggc atggggcgta
      481 ctggcgctgg cgcagcggat tcacccctgg tttggctgga gcgtcgaagt ctggatgatc
      541 tttaccacgc tggccggacg ctctctggcc cgcgccgcgc aggaggttga acgaccgttg
      601 cgggagaacg accttgcgga aagccgaata aaactctcct ggatcgtcgg gcgcgatacg
      661 tcgcaacttc agccagcgca gatctatcgc gccgtggtgg aaacggttgc agaaaacacc
      721 gttgacggca ttatcgcgcc gctctttttc ctctttctcg gcggcgcgcc gctggcgatg
      781 gcctacaaag ccgtcaatac cctggattca atggtgggct acaaacatga aaaataccgg
      841 gcgattggta tggtcagcgc ccgtatggac gacgtagcga actatttgcc cgcccgactg
      901 agctggctgt tgctgggcat tgcggcagga ctgtgtcgcc tgagtggttg gcgggcgctg
      961 cgtattggct ggcgtgaccg ttataaccac agtagcccaa attgcgcctg gtcggaagcg
     1021 tgtgtggctg gcgccttagg aatccagctc ggtggcccaa ataactactt tggcgagcgt
     1081 gtggacaagc cctggatcgg cgacgcgcag cgcggtattt ccgtggacga tatttcccga
     1141 acgattcgat tgatgtgggt cgcttcaacc ctggcgctgg cgctgtttat tgcggcgcgg
     1201 tgcgggttat ctggcgtggc ctgaggacga cagtatgcat tatatccagc agccccaaac
     1261 cattgaggcc aacagtttca ccattattag cgacattatt cgcgaaacgc gtcctgatta
     1321 ccgtttcgcc agtccgctcc atgaggccat tatcaagcgg gttattcata ccaccgccga
     1381 tttcgactgg ctggacattt tgtggttctc tgccgatgcg ctggagcagc tttgtgatgc
     1441 gctacgccaa ccgtgcatta tttataccga taccacgatg gcgctgtccg gcattaataa
     1501 aagattactg gcgacgtttg gcggcgagtg tcgctgttat atcagcgatc cgcgcgtggt
     1561 gggcgtaccg gtaggctttg tcggcgcggc ggagtccaaa gaggcgctca cccatagcca
     1621 ttttcccgcg gttgccgcgt tagggcgtaa aggcggcagt aacgtggctg ccgctatcgt
     1681 caatgcgctg ctctatcacc tccgggaggc ctgatgagcg agctttcttt tgacgcgccg
     1741 gtctggcgcc acggtaaagc gttacgtaaa ggatatacca ccggttcctg cgcgacggcg
     1801 gcggcaaaag tcgccgagct gatggtatta cgtcaacatc tgattcatca ggtctccatc
     1861 gtcacgccgt cgggcgtcac gctatgcctg aacgtggagt cgccgcacat tgaaggccag
     1921 caggcgatag ccgcaattcg taaagatggc ggcgatgacg tggatgccac gcacgggatg
     1981 ctgatttttg cccgcgttac gctcaacgac agcggtgaga ttacgctcac tggcggcgaa
     2041 ggtattggta cggtaacgcg taaaggggtt ggactgccgc tcgggagcgc tgccatcaat
     2101 cgtacgccgc gccataccat tgaatctgcg gtgcgcgaag cgataggccc ggcgcgtggg
     2161 gctgatgtgg agatttttgc cccggaaggc gaagtgcggg cgcagaaaac ctataactcg
     2221 cggcttggca ttcttggcgg catttccatt attggcacta ccggtattgt gacgccgatg
     2281 tcggaagaaa gctggaaacg ctcgctatcg ctggaactgg agatcaaacg ggcgtcagga
     2341 ttaacgcggg tgatactcgt gccgggcaac cacggcgaac ggtttgttcg cgaacaaatg
     2401 ggcgtcgaca cacaggcggt cgtcaccatg agcaattttg tcggctacat gattgaagag
     2461 gcggtacggc tgggattttg ccagatagtg ctggtgggtc atcctggaaa attgatcaaa
     2521 atcgccgccg ggatctttca tacccatagc catatcgccg atgcgcgcat ggaaacgctg
     2581 gtcgcgcatt tagctttact gggcgcgccg ctggagttac tcaccctggt cggcgattgc
     2641 gataccactg aagcggcaat ggagcacatt gaagcatatg gcttcgggca tatctataac
     2701 catcttgcca ggcgtatttg tttgcgagtc atgcagatgc tgcgttttac caaaacgccg
     2761 cctgtctgcg acgccatcct gttttctttt gataaccata ttctcggcag taatcgtccc
     2821 gtcgacgaga ttgctaagga gctgcaatgc taacggtcgt gggaatgggg cccgctggac
     2881 ggcatttgat gacgcctgcg gcgctggaag cgatagacca cgccgatgcg ctggcaggcg
     2941 gtaaacggca tttggcgcag tttccggcgt ttggcggcga acgatttacg ctgggcgcgg
     3001 atattggcgc gttgttgtca tggattgccg cccgtcggga taaagggatc gtggtgctgg
     3061 cctccggcga tccgctgttt tatggcatcg gtacacgcct ggtggcgcat tttggtatcg
     3121 aacaggttcg cattatccct ggcatcagcg ccgtacagta tctgtgcgca caggctggaa
     3181 ttgatatgaa tgacatgtgg ttgaccagta gccacggtcg ttgcgtcagc ttcgagcagt
     3241 tggcgaacca tcgcaaagtg gcgatggtca cggatgcccg ctgcgggccg cgggaaatcg
     3301 cgcgggaact ggtcgcgcgt ggtaaagggc atcgcttgat ggtgattggt gaaaatctgg
     3361 cgatggaaaa tgagcggatc cactggctac ccgtcagtgc ggtcaacgcc gactatgaaa
     3421 tgaatgcagt ggtgatcctg gatgaaagat gagctttttc tgcgcggcga gaacgtgcca
     3481 atgaccaaag aggcggtacg ggcgctggca ctgtcgaaac ttgagctcca ccgcgccagt
     3541 cacctgattg acgtcggggc gggaacggga agcgtctcaa ttgaagcggc gctgcaattt
     3601 ccttcgttgc aggtgacggc tattgagcgt aatcctgccg cgctacggct gcttgatgag
     3661 aatcgtcagc gctttgcctg cggcaatatc gatattctcc ccggcgaagc gccaatgacc
     3721 ataaccggga aagccgatgc ggtgtttatg ggcggcagcg gcgggcatct gacggcgctg
     3781 attgactggg cgatgggcca tctgcatccc ggtggccgtc tggtgatgac ctttatcttg
     3841 caggaaaacc tccatagcgc gctggcgcat cttgtgcaca tcggcgcatg ccgaatggac
     3901 tgtgtacagc ttcagctttc atcgttaacg ccgctggggg cgggacacta tttcaaaccg
     3961 aacaaccctg tttttgttat agcctgtcag aaggaagaaa accatgtcag agacatttga
     4021 tccacgctgt gtatggttcg tcggcgccgg gccgggcgat cgcgagctga tcacgcttaa
     4081 aggctaccgc ctgctgcaac aggcgcaggt agttatctat gccggttcgc tgatcaatac
     4141 cgaactgctg gattactgcc ccgcgcaggc agaacgctac gacagcgccg aactgcatct
     4201 tgagcagatt atcgagctga tggccgcggg cgtgaaagcg ggaaaaacgg tggtgcggtt
     4261 gcaaacgggc gatgtctcgc tgtacggctc cgtgcgtgag caaggcgaag agttaacccg
     4321 ccgtggtatc gactggcagg tagtgcctgg cgtcagcgcg tttctcggcg ctgcggcgga
     4381 gctgggtgtg gaatataccg taccggaggt atcgcagagt ctcattatta cccgtctgga
     4441 agggcgtacg ccagtaccgg cgcgcgaaca actggaggcg ttcgccagtc accagacgtc
     4501 gatggcgatt tatctctccg ttcagcgtat tcatcgggtg gcggaacgtc tcattgccgg
     4561 cggttatccg gcaactacgc ctgtcgcagt catctataag gctacctggc cggaaagcca
     4621 gaccgttcgc ggcacgttag cggatattag cgacaaagta cgtgatgctg gcatccgtaa
     4681 gacggcgcta atcctggtcg ggaattttct gggtaaggag tatcactact caagacttta
     4741 tgcagcggac tttagccatg aataccgtaa agcctgaatc cattgcgttg ttttgcctga
     4801 cgcccggcgg cgtggcgctg gcaaagagac tcgccgcgat gctgccgtta acctgcttta
     4861 ccagtgaaaa actgcgggaa gagggattta ttcccttcga tggcggattc gctaataccg
     4921 cccggcaggc ttttaccact tataccgcgc ttatttttat cggcgcgacc ggcattgccg
     4981 ttcgtgtcct ggcgccgtta gtgaacgaca agttcagcga tccggcggtg gtcgtcattg
     5041 atgaacgtgg tcagcatgtc attagcctgc tttccggtca tgcgggcggg gccaatgcct
     5101 tgacgcgcta cctggcagga atgttaggcg ccgatccggt gattaccacg gcaacggatg
     5161 tcaatgagat gtccgcgttg gacaccttag ctttccagct taacgcccgc atgtccgatc
     5221 ttcgaacggc ggtaaaaacc gttaaccaga tgttggtcag tcatcaacgt gtggggttat
     5281 ggtgggatgc cgaactaacg gaagagatcg gccagtgtga tattcgcggt tttatccctg
     5341 ttgatgattt gcagcggttg cctgaactgg atgcgcttat ctgcgtctct ttgcgtaatg
     5401 acctccctga gcttcccgta ctgcactgga aactggtgcc ccagcgcgtg gtggcgggaa
     5461 ttggctgtcg ccgcgatacg ccatttcccc tgttagcgac attactggcg cgtcagcttg
     5521 aagcgcagaa actcgatccg ctggcgttaa aagcgattgg cagcgtcacg ctcaaaaaag
     5581 gggagccggg gcttattcag ctcgcctcct gctgccgcgt gccttttaaa acctttaccg
     5641 ccgaagcgtt gcgcgaattc gaacaccatt ttcccggttc tggcttcgtc agaaaaacgg
     5701 tgggcgttgg cagcgtatcc ggcccggctg cgtggttatt aagccagggt caattgttag
     5761 gcgaaaccct gcgcgaacag ggcgtcacta ttactttggg agtttcacac tgatgttaag
     5821 cgtaatcgga attggccctg gctcacaggc aatgatgacg atggaggcga ttgaggcgct
     5881 tcaggcggcg gaaatcgtcg tgggctacaa aacctatacc catctggtta aagcattcac
     5941 cggcgacaaa caggtgatca agaccggcat gtgtaaggaa attgaacgct gccaggcggc
     6001 tattgaactg gcgcaggccg ggcataacgt agcgctgatt agcagcggcg acgccggtat
     6061 ttacggcatg gcgggactgg tgctggagct ggtgagcaag cagaaactgg acgtcgaggt
     6121 gcggctcatt cctggcatga ccgccagcat cgccgccgcc tctttactgg gcgcgccgct
     6181 aatgcatgac ttctgccata tcagcctcag cgacctgctg accccgtggc cggttattga
     6241 aaaacgcatc gttgccgccg gagaggcaga ctttgttatc tgtttttaca acccgcgcag
     6301 ccgcgggcgc gaagggcatc tggcgcgcgc gtttgacctg cttgccgcca gtaaaagcgc
     6361 gcaaacgccg gttggcgtgg tgaaatccgc cggacgtaag aaagaggaaa aatggctgac
     6421 cacgctcggc gatatggatt ttgaaccggt agatatgacc agtctggtca tcgttggtaa
     6481 taaaacgacc tatgttcagg atgggctgat gataacgccg cgaggttaca cgctgtgaat
     6541 gagggggagg tgctggtggt gggcggcacc agcgatgcgc gcgcgttatg ccgacaactg
     6601 ggtgcggcga acgtcgcgta caccttatct gtggcgacgc cagccggaaa agcgctggct
     6661 ggcgacatta aaggacaggt gcgctgtggt cgtctggagt acgggcagat ggtcgcatgg
     6721 ctaaaagaaa accgtactcg ctgggtaata gatgcgtcgc atccttatgc agaaatggtc
     6781 agccataacc tccttcgcgc ctgtgaaacg gcggacgtgt tgttaagtcg ttatcagcgt
     6841 ccggagcagc ttagcaatct gacgcatccg cttctctata cggcgcgcag tattgccgat
     6901 gcctgcgaga tagcgaggcg ttttggtccg cgcgtgttac tgacgaccgg cagtaaagat
     6961 ctggccgtct ggcgtgccgg gctggcggaa aaaacgttgc tggcgcgcgt actgcccgtg
     7021 gcggaggtga ttcaacgctg cagcgaactg gggttcggcg ttggagaaat tttcgcactg
     7081 tgtgggccgt tcagcgctga ttttaacgcc gcgttttacc gccagtgccg ggctgacgtg
     7141 gtcattacca aagcgtccgg cgcggagggg gatatcagga aaaagttcag ccctgtctgg
     7201 atgcgggcat tccctgcatc gttattgcgc gcccgacgcc gctcgtgacg ggtgatgagt
     7261 tactggaaag ctaggccgcc tttgcgcagc gtttatcgcg ctggctggcc gcagctaagg
     7321 agtaaaaatg aaaaaagcgc ttctggtggt cagttttggc accagctatc acgacacctg
     7381 tgaaaaaaca ttgtggcgtg cgaacgtgat ctggcggagt cctgtcccga tcgcgacctg
     7441 tttcgcgcct tcacttccgg aatgatcatt cgcaagcttc gccagcgtga cggtatcgac
     7501 atcgatacgc cattacaggc tttgcaaaag cttgcagcac agggatatca ggacgtggcg
     7561 attcagtcgt tgcacattat taacggcgac gaatatgaaa aaattgtccg tgaagtacaa
     7621 atcttgcgtc cgttatttac tcgcctgacg ctgggcgtgc cgctgctgag cagccataac
     7681 gattatgtgc agctaatgca ggcgttgcga caacagatgc catcgctcag acaaacggag
     7741 aaagtcgttt ttatgggcca cggcgccagc catcatgcat tcgcagctta tgcctgcctc
     7801 gatcatatga tgaccgcgca gcgcttcccg gcgcgcgtcg gcgctgtaga aagctacccg
     7861 gaggtcgaca tcctgatcga cagcctgcgt gacgaaggcg tcaccggcat acatttgatg
     7921 ccattaatgc tggtggcggg cgatcacgcc ataaatgata tggcttcaga cgacggcgac
     7981 tcatggaaaa tgcgctttaa cgcggcgggc attccggcga cgccgtggct gagcgggctg
     8041 ggagaaaacc cggctatccg ggcgatgttt gtcgcgcatt tgcaccaggc gctgaacatg
     8101 gcggtagagg aggcggcatg aacggtaaat tatacgcatt aagtaccggg ccaggcgcgc
     8161 ccgacctgat aaccgtccgc gcagcgcgga ttcttggctc gctggacatt ctgtatgcgc
     8221 ccgccggtcg taaggggggc gatagtctgg cgttgtcgat tgtgcgcgac tatctcggcg
     8281 agcagacgga agtacgttgt tgccatttcc ctatgagcgc tgacggcgcc gagaaagaag
     8341 cggtctggaa cgaggttgcc gccgcgctta ccgcagaggt ggaagcgggt aaacaggtcg
     8401 gttttattac cctgggcgat gcgatgctat tcagtacctg gattttttta ctccagagaa
     8461 tcggctgccc ggagtggctg gagattgtcc ccggcgtcac gtccttcgcc gcgatagccg
     8521 cccgcgcgaa aatgccgctc gccatagaac ggcaatcgct ggcggttatt tcttgtaccg
     8581 cgccggaagc ggaaatagcc caggcgctac aacagcatga tagcctggtg ttgatgaaag
     8641 tgtatggccg attcgcccgt attaaagcgt tgctggcgca ggctggcctg ctggaatgcg
     8701 ccttaatgat gtccgaggcc acgctgcccg gcgagcagtg ctggcgccac ctccacgagg
     8761 tcaacgatga tcgagcgttg ccctattttt cgaccattct ggtcaataaa cagtgggagt
     8821 atgcagaatg aaacttgaac agcagcttag acagttgtct ttcagtggac tggctgcagc
     8881 gctattgctg atggttgtcc cgcaacaggc gtttgcgatg catatcatgg agggcttttt
     8941 accgccagtg tgggcgctgg cctggtggtt actgttttta ccctgcttgt ggtatgggct
     9001 ggtacgctta cggcgtattg tgcaggagga taatcatcag aaggtactgc tggcgctgtg
     9061 cggcgcgttt atttttgtcc tgtcccgctc aaaattccgt cggtaacggg gagttgttca
     9121 catccgaccg gcgttggtct ggcggttatc ttgttcgggc ctggggtggt ggcgattctc
     9181 ggcgcggttg tgctgttgtt tcaggcgcta ttgctggcgc acggcggcct gacgacgctt
     9241 ggcgcaaacg gaatgtcgat ggcggtgatt ggcccggttg tcggttatct ggtgtggaaa
     9301 atggcctgcc gtgccggact gcgccgcgat gtcgccgttt ttctgtgcgc gatgctggcg
     9361 gatttggcaa cctattttgt gacttcagtc cagcttggcg ttgcgtttcc cgatccccat
     9421 gccggagcga cagggtctgt tgtgaagttt atggggattt tctgcctcac acagattcct
     9481 gtcgctattg ctgaaggttt attaaccgtc atgatttatg accagttaac caaacggcaa
     9541 gtgattaccg tacaaggaca ttaaaatgaa aaaaacgttg atgttgttag cgatggtggt
     9601 ggcgctggtg attctgccgt tttttattaa ccatggcggt gaatatggcg gttcagacgg
     9661 cgaagcggaa agccagattc aggctcttgc gccgcagtat aaaccttggt ttcagccgtt
     9721 atatgaaccc gccagcggtg aaattgaaag cctgctgttt acccttcagg gctctcttgg
     9781 cgcggcggtg attttttata tcctggggta ttgcaaaggt aaacaacgcc gtgatgaccg
     9841 ggcttgatcg actcagctat caaagccgct gggcacacgt tgcgccgcag cgcaagtttt
     9901 tgctgtggct ggcgatgatg atactggcgt ttgttctgcc gcctgtaggg cagggcattg
     9961 agctgctgat cattgccgga ttgagctgtt ggctattgcg catatccctc tggcgttggt
    10021 gtcgatggat ggcgatacct tttggatttt tgttggtcgg cgtgataacg attatcttca
    10081 gcatcagccg cgagccgcaa atgctgctgg ctggcatatc tgttgggccg tactggatcg
    10141 ggattacccg tgcgggcgtg gttacggcga atgaaacgtt ctggcgtagc ctgacggcgc
    10201 tgtccgcgac gttgtggctg gtgatgaacc taccgtttcc gcagttaatt agcttgctta
    10261 agcgcgcgca tattccacgc ctgcttaccg agcaaatcct gttaacgtgg cgctttctct
    10321 ttattcttct ggatgaggcg gtggcaatcc gtcgtgcgca aacgctgcgt tttggttatt
    10381 gcagcctgcc gaacggctat cgatctctgg caatgctgac tggactcctg tttacgcggg
    10441 tgttaatgcg ttatcagcaa atgaccacca cgctggatat caaactgtat cagggtgatt
    10501 ttcacctgta aggactatta tgcttgccac ttcagacctg tggtttcgtt atcaggatga
    10561 gccggtactt aaagggttaa atctggattt ttcgctctcg cctgttaccg gtttggtggg
    10621 cgcgaacggt tgtgggaagt ctacgctttt tatgaacctg agcggcctgt tgcgtccgca
    10681 aaaaggggcc gtattgtggc agggaaaacc gttggattac agcaagcgcg gactactggc
    10741 gctgcgccag caagttgcga cggtttttca ggaccctgaa cagcagattt tttatactga
    10801 tatcgatagc gacattgcgt ttagtttacg taatttgggt gtgccggagg cggaaatcac
    10861 gcgccgcgtc gacgaggcgc taacgctggt tgacgcccaa cattttcgcc atcagcccat
    10921 tcagtgtttg agtcatggac aaaaaaaacg tgtggctatc gccggagcgc tggtgctaca
    10981 ggcgcgctat ctattgctgg atgaacccac tgctggtctt gatcccgcag ggcgcactca
    11041 gatgattgct atcatcaggc ggattgtggc gcagggaaat catgtcatta tctccagcca
    11101 tgatatcgat cttatttatg aaattagcga tgccgtatac gtgttacgcc agggccagat
    11161 cctgatgcat ggcgcgcctg gcgaggtttt cgcgtgtacg gaagcgatgg aacacgcggg
    11221 gctaacccag ccctggctgg tcaaacttca tactcaactg ggactgccgc tgtgtaaaac
    11281 agaaacggag ttttttcatc gaatgcaaaa gtgcgcattc agggaggcgt catgacgcag
    11341 gcagttatgt tgcaggggac ggcatccgac gtcggcaaaa gtgtgctggt ggccggttta
    11401 tgccgcattt tttatcagga tggtctgcgt accgcgccgt ttaaatcgca aaatatggcg
    11461 cttaattctg gtattacgcc ggatggtaaa gagatggggc gggcgcagat ttttcaggcg
    11521 gaagccgcgg ggatcacgcc agatgtgcgt atgaatccgg tgctgctcaa accgaccagc
    11581 gatcgccagg cgcaggtcgt gctgatgggg aaagtggcga ccaatatgga tgcggtgagt
    11641 taccatgact ataaaccgcg tttgcgtgag caaatccttg cggtctataa cagcctggcg
    11701 caggaatatg acgttattgt gctggaaggc gccggaagcc cggcggaaat caatctgcgc
    11761 gatcgcgata tcgtcaatat gggaatggcg gaaatggccc agtgtccggt tattctggtg
    11821 gcggatatcg accggggcgg cgtattcgcc gctatttatg gcacgctggc gctactgcac
    11881 aaacaggagc gtgacagagt aaagggcgtc attatcaaca aattccgcgg cgacgtggcg
    11941 ctactctatt ccggtatcga acaaatcgaa tcgcttaccg gcgtcccggt tctgggagtg
    12001 atgccatggc tggatgtgga tctggaagat gaagatggcg tcgcgctgca aaacgataaa
    12061 tatcgcggta acgccccccg tgatatcact attgccattg tgcaactgcc acatatttct
    12121 aactttacgg attttaacgc tctggcggcg cagccggatg tgcgcatacg ctatattcgc
    12181 cgcccggaag cgttgactga cgctgatctg gtgatcctgc cgggcagtaa gaatacgctg
    12241 agcgacctcg cctggctgcg cgaaagcggg atggcggatg cggtattgca gacacatcgg
    12301 cagggcgtgc cggtgatggg aatttgcggt ggctaccaga tgctgggcga cactattgtg
    12361 gatgaggtgg agtcggggct gggtacgcag ccgggcctgg gactgcttaa tacgatcact
    12421 cgctttgcac aggataaaac cacgacgcag gttaacgcga caatgtcagg cgagctgccc
    12481 ggctggctgg ctgccgcggc ggggctaccg gtacgcggtt atgaaatcca catgggggaa
    12541 acggtgctgc aggaaggatg ctgtacggcc atgacgttac agaaaaatgg atgctctgtg
    12601 gcggatggcg cggtcaccgc cgacggactg gcgtttggca cttaccttca cggtctgttt
    12661 gacagcgatg cctttacccg tgcggtggtc aatgggttac gggcgcgaaa agggcttgcg
    12721 ccgtgggaaa cgactttttg ttatgcggag cataaagcgc ggcaatttga tctgctggcg
    12781 gaagcgatgc ggcaacatat tgatattgat aaaatttaca ccatcatgca acagcatcag
    12841 gagccggtat gatgattctg gtgacgggcg gggcgcgtag tggtaaaagc cgtcatgctg
    12901 aagccttaat tagcgatgcg ccgcaggtac tgtatatcgc cacctcgcag attcttgatg
    12961 acgagatggc ggcgagaatt cagcatcata aagatggcag gccggcacac tggcggaccg
    13021 cagaatgctg gcggcatctt gatacgttga ttaccgcgga tcttgcccct gacgacgcga
    13081 ttttgctgga atgtattacc accatggtga cgaatctgct gtttgcgctg ggaggcgaaa
    13141 acgatcccga acagtgggat tacgcggcga tggagcgcgc cattgacgat gaaattcaga
    13201 ttttaattgc agcctgccag cgctgcccgg cgaaagtggt actggtgaca aatgaagtgg
    13261 gaatggggat cgtcccggaa aaccgcctgg cgcgccattt tcgtgatatt gccggtcggg
    13321 tcaaccaacg actggcggca gcggcggatg aggtctggct ggtggtctca ggtattggag
    13381 tcaaaattaa atgagtaagc tgttttgggc catgctcgct tttattagcc gcttgcccgt
    13441 gccgtcacgc tggtcgcagg gactggattt cgagcagtat tcgcgtggga tcgtgatgtt
    13501 tccctttatc gggttgattc tgggggggat tagcggcctg attttcatcc tcctgcaacc
    13561 ctggtgcggt attccgctcg cggcgttgtt ctgtattttg gcgctggcgc tgctgaccgg
    13621 tggttttcac ctggatgggc tggccgatac ctgcgatggc attttttccg cgcgccgccg
    13681 cgagcgaatg ctggagatta tgcgcgatag tcgtctggga acccatggcg ggctggcgct
    13741 tatttttgtg ctactggcaa aaattctggt ggtcagcgaa ctggcgttac gtggaacgcc
    13801 aatgttggcg gcgctggcgg cggcctgtgc ggccggacgc ggcagcgctg ttttattgat
    13861 gtaccgtcat cgctacgccc gtgaagaggg gcttggcaat gtatttatcg gtaaagtcag
    13921 cggacggcaa acctgcatta ctctgggatt ggcggtaatc gtcgccacgg tattactgct
    13981 tggtatgcaa ggcctggcca caatggtggt cacactcgcg gcgattttca tccttggcca
    14041 gttgcttaaa cgtacgcttg gcggtcaaac cggcgatacg ctgggcgcgg cgatcgaact
    14101 tggcgaactg atctttctgc tggctctgtt atgagccgat tattacggac gagacatctt
    14161 atgcagacac tacacgcttt attccgtgac attcctgcgc cggacgccga ggcgatggcg
    14221 cgtgcgcagc aacatattga cggcctgctc aaaccgccgg gtagcttggg cagactggaa
    14281 accttagccg ttcagctcgc gggaatgccg ggtcttaacg gtacgccgca ggtaggtgaa
    14341 aaggcggtgc tggtgatgtg cgccgaccat ggcgtctggg atgaaggcgt agcggtttcg
    14401 cccaaaatcg tgacggcgat tcaggcggcg aatatgacgc agggaacaac cggcgtatgt
    14461 gtgcttgccg ctcaggctgg tgcaaaggtg catgtcattg atgtcggtat tgatgccgaa
    14521 cctattccgg gcgtagttga tatgcgcgtc gcgcgcggct gcggaaatat tgccgttggc
    14581 ccggcgatga gtcgctctca ggctgaggcg cttttgctgg aggtttcccg ctatacctgc
    14641 gacctggcga aacgcggcgt gaccttattt ggcgttgggg agctgggaat ggcgaacact
    14701 acgccagccg ccgcgatggt cagcgttttt acaggaagtg atgcaaaaga ggtggtgggg
    14761 attggcgcga atcttccgcc ttcccgcatc gataataaag tagacgtcgt gcggcgggcg
    14821 attgcgatta atcagcccaa tccgcgcgac ggcattgatg tgttgtcgaa ggtggggggg
    14881 tttgatctgg tcgggatgac cggcgtgatg cttggcgcgg caaggtgtgg cttacccgta
    14941 ttgctggatg gctttctttc ctactcggca gcgctggcgg cctgtcagat tgcgcctgcg
    15001 gtgagacctt atctgatccc gtcgcacttt tcggcggaaa agggcgcccg catcgcgctc
    15061 gcgcatttgt ctatggaacc ctatttgcat atggcgatgc ggttaggtga aggaagcggc
    15121 gcggcgctgg cgatgccgat cgtggaagcc gcgtgcgcca tgttccacaa tatgggggaa
    15181 ttggcggcca gtaatattgt cctgccggag gggaacgcaa acgcaacata acccgggcgc
    15241 acaacaccag ccatgtgaga aaaaagctat acttaacgca cacctgccgc gacaaaggaa
    15301 gggatataat gcgtcgtatc acaccttttt ttccgttttt cgtcttgttg gtaagccatt
    15361 tctcgctggc tataagctat ccgttgccgc ccgaaggcag tcgtctggta ggacagcctg
    15421 tcacaatcgc cgtacctcag aacaatactc agcccttaga gtcatttgcc gcccgctatg
    15481 gtcaggggtt gagtaatatg cttgaagcga atcccggcgt ggatgtgttt ttacctcagt
    15541 ctggttccac actggtagtg ccgcagcagt tgattctgcc tgacaccgtt cgtgaaggta
    15601 ttgtggtaaa cgtcgccgag atgcgccttt attattatcc cgcaggcacg aatacggttg
    15661 aggtactacc cattggtatt ggtcaggctg gccgtgaaac gccgcgcaac tgggtaactg
    15721 cggttgaacg caaacaagat ggcccggttt gggtgccaac ggctaatacg cgtcgggaat
    15781 atgctaaaga gggaaaaacg ctgcccgcga tggtgcctgc ggggccggat aaccctatgg
    15841 ggctatacgc aatatatatc ggcaggttat atgccaccca tggcactaac gctaactttg
    15901 gcattggcct tcgcgtcagt cagggctgta tccgtttacg caatgacgat attaaatatt
    15961 tattcgacca tgttcctgta ggaacccgcg ttcagattat cgacaggccc gttaaatttt
    16021 cggtagagcc ggatggcagt cgttggctgg aggtacacga accgctttct cgcaaccgtg
    16081 ctgaatttga gtcagacaaa aaagttccat tgcccgttac gccagtgctg cgcacgttta
    16141 tcaaagggga tgacgttgat acttcgcggg ttaatgaggt gctggagcgc cgttccggaa
    16201 tgccggtcaa cattagcgca ggcaggtctg gcctttaaat atcctgccac attgctggtt
    16261 ttcatgggct ggaacatctg tattagtagt gagtgtcatg gcaggggctt cattttctca
    16321 acgaaccgcg aggccgccga ttaagccccc aaaaactatg gatgccaaaa agcccggaaa
    16381 accttatcag gtcaaccggg taaagataag ttcttatttt ttaaacgtct ccggactcgc
    16441 agggatatcc cgaaactaaa atctggctcc tctgactgga ctcgaaccag tgacatacgg
    16501 attaacagtc cgccgttcta ccgactgaac tacagaggaa tcgtgtgggg tcgtatatta
    16561 gcggcggaaa aatttttgtc aaaccccatt taacccctta cagattcgat tgcgggttat
    16621 ctcatcactt tgttgcattt gcagacattt tttctgcaaa aagctttgca gccttacgat
    16681 ttctcgctca ttattgaaat gtggtttcaa ctctcttctt taaggtccat tttgaacgtc
    16741 tccactgcct tacgccaggt tgtcgtccgt acgccctggt atgccaaacg caagagctac
    16801 aaagtgttgt tctggcgtga aatcacccca cttgctatcc ccatttttct ggaaaatacc
    16861 tgtgttttgc taatgggcgt gctcagtact tttctcgtca gttggttggg caaggaagca
    16921 atggcgggcg tggggcttgc cgacagtttt aatatggtaa ttatggcttt ttttgcggct
    16981 atcgatcttg gtactacggt ggtggtcgcc tttagcctcg gcaagcgcga taggcgacgg
    17041 gcaagggcgg cggcgcgcca gtcgctggtg attatgacgc tatttgccgt tgtgctggca
    17101 gtggtcattc attatttcgg cagtgaaatt attaatattg tcgcaggcga ggcgacgcca
    17161 gaagtaaagg ggctggcgtt aacgtacctt gaactgacgg tactgagtta tccggctgcg
    17221 gcaattgcgc taatcggtag cggcgcgctg cgtggggcag ggaatacgaa aatcccgttg
    17281 atgattaacg gcgggatgaa cattctcaat attgtcatca gcagcatcct gatttacggg
    17341 gctttctcct ggcaagggct gggttttgcc ggtgcggggc tgggattaac catttcgcgc
    17401 tacatcggcg cggtagcgat tatttgggtg ctgatgattg gttttaatcc ggcgctgcgc
    17461 attccgctga aaagctatct gaagccgttg aatttcggca ttatctggga agtgatgggt
    17521 atcggtattc cggcgagcat tgaatcagtg ctgttcaacg gtggcaagct actgacgcaa
    17581 atgtttgtcg ccggaatggg cactaacgtt attgcgggta actttattgc cttttccgtg
    17641 gcggcgctta tcaatctgcc gggtaacgcc cttggttcgg cgtcgactat tatcaccggt
    17701 aagcgtcttg gtaccgggca aattggtcag gcagagcgtc aattgcgcca tgtattctgg
    17761 atgtcgacta tcgtacttac ggcaatcgcc tggggaacag cgccgttcgc gggtctgttt
    17821 gcctcatttt atacccagga gcaggacgta aaagaggtag tgaaagttct gctctggctt
    17881 aatgctgcct ttatgccaat ttgggctgcc gcgtgggtgc tgccgtcggg ttttaaaggc
    17941 gcgcgcgatg tgcgatttgc gatgtgggta tcgatgctgg ggatgtgggg ctgtcgcgtt
    18001 gtggcagggt atacgcttgg tattgtgctg ggtatggggg ttgtaggggt ttggctgggg
    18061 atgtttcttg actgggccgt gcgtggcgca ctgttttact ggcgtctgat aagcgggcgc
    18121 tggctgtgga gatacccgcg cgtaaagagg gagtaagagc tttttgctgt gaaaatcatc
    18181 aggaaacggt gaattttaac cgaagtgtgg aataaagcag caaacgaact ttttttgtga
    18241 aaacaggctt tgacaagcca ggggcacctc g
//
LOCUS       DAJVSD010000070        17910 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.070, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000070 DAJVSD010000000
VERSION     DAJVSD010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 17910)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17910)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17910
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.070"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            417..2006
                     /gene="purH"
                     /locus_tag="OQP62_001972"
     CDS             417..2006
                     /gene="purH"
                     /locus_tag="OQP62_001972"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HCS1721535.1"
                     /translation="MQQRRPVRRALLSVSDKAGIIEFAQALSARGVELLSTGGTARLL
                     AEKGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAIMEQHHIAPIDMVV
                     VNLYPFAETVAREGCSLADAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYDAIIKEM
                     DANEGSLTLDTRFDLAIKAFEHTAAYDSMIANYFGSMVPAYHGESKEAAGRFPRTLNL
                     NFIKKQDMRYGENSHQQAAFYIEENVKEASVATAQQIQGKALSYNNIADTDAALECVK
                     EFNEPACVIVKHANPCGVAVSTSILDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAI
                     ISRQFVEVLIAPSASEEALKITSAKQNVRVLTCGQWASRVPGLDFKRVNGGLLVQDRD
                     LGMVSEAELRVVSKRQPTEQELRDALFCWKVAKFVKSNAIVYAKENMTIGIGAGQMSR
                     VYSAKIAGIKAADEGLEVKGSAMASDAFFPFRDGIDAAAAVGVSCVIQPGGSIRDDEV
                     IAAADEHGIAMIFTDMRHFRH"
     gene            2022..3311
                     /gene="purD"
                     /locus_tag="OQP62_001973"
     CDS             2022..3311
                     /gene="purD"
                     /locus_tag="OQP62_001973"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HCS1721536.1"
                     /translation="MKVLVIGNGGREHALAWKAAQSPLVDTVFVAPGNAGTALEPALQ
                     NVAIGVTDIPALLSFAQNEKIDLTIVGPEAPLVIGVVDAFRAAGLKIFGPTEGAAQLE
                     GSKAFTKDFLARHQIPTAEYQNFTEIEPALAYLREKGAPIVIKADGLAAGKGVIVAMT
                     LEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRV
                     GNGDTGPNTGGMGAYSPAPVVTDEVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMI
                     DKQGNPKVIEFNCRFGDPETQPIMLRMKSDLVDLCLAACDGKLDEKTSEWDERASLGV
                     VIAAGGYPGSYSTGDEIHGLPLEEVADGKVFHAGTKLADDDRVLTSGGRVLCATALGH
                     TVAEAQKRAYALMTDIRWDGSFSRNDIGWRAIEREQN"
     gene            complement(3308..4633)
                     /gene="zraR"
                     /locus_tag="OQP62_001974"
     CDS             complement(3308..4633)
                     /gene="zraR"
                     /locus_tag="OQP62_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent response regulator
                     transcription factor ZraR"
                     /protein_id="HCS1721537.1"
                     /translation="MIRGKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQ
                     VREKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALD
                     YLIKPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAP
                     SDATVLIHGDSGTGKELVARALHACSARSDKPLVTLNCAALNESLLESELFGHEKGAF
                     TGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVW
                     LIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERN
                     RKAVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTGEYISERELPLAIAATPIK
                     AENSAEIQPLVDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR"
     gene            complement(4639..6036)
                     /gene="zraS"
                     /locus_tag="OQP62_001975"
     CDS             complement(4639..6036)
                     /gene="zraS"
                     /locus_tag="OQP62_001975"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     ZraS"
                     /protein_id="HCS1721538.1"
                     /translation="MSFIRLHKDAAAMWLSRLLPAAIFILVGLFSIMVIRDYGRESAA
                     ARQTLLEKGNVLIRALESGTRVGMGMRMHHAQQQTLLEEMAGQPGVLWFAVTDAQGVI
                     ITHSNPGMVGKSLYSPSEMHQLNPGPQECWRRVDVAANGETVPALEIYRQFQPLFGMR
                     GHGMRGHGMARSANDDEPAKQTIFIAFDASELAATQAREWRNTLIVLSALAAVLLATL
                     LAFFWYQRYQRSHRELLDAMKRKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERT
                     PAGGESHELAQVMAKEADRLNRVVSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDA
                     QSREIQLRFTANETLKRIQADPDRLTQVLLNLYLNAIHAIGRQGTITVEAKESGTDRV
                     IITVTDSGKGIAPDQLEAIFTPYFTTKADGTGLGLAVVQNIIEQHGGAIKVKSIEGKG
                     AVFTIWLPVIARQQD"
     gene            6290..6745
                     /gene="zraP"
                     /locus_tag="OQP62_001976"
     CDS             6290..6745
                     /gene="zraP"
                     /locus_tag="OQP62_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc resistance sensor/chaperone ZraP"
                     /protein_id="HCS1721539.1"
                     /translation="MKRNNKSAIALIALSLLALSSGAAFAGHHWGNNDGMWQQGGSPL
                     TTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLG
                     QKLDEQRVKRDVAMAQAGIPRGAGMGYGGCGGYGGGYHRGGGHMGMGNW"
     gene            complement(6787..7479)
                     /locus_tag="OQP62_001977"
     CDS             complement(6787..7479)
                     /locus_tag="OQP62_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1481 domain-containing protein"
                     /protein_id="HCS1721540.1"
                     /translation="MNSFIEGACQPLLSVWRRAFLFSGALLLTACSHNASPPPFTASG
                     FAGDHGAVRIWRKDTNDEVHLLSVFSPWHSGSTTTSEYRWQGDTLSLIELNIYSKPPE
                     HIRARFDAHGELSFMQREVGGQKQQLSNDQIALYRYRAEQIRQTSDALRLGRVILRQG
                     RWHADHTVTTCEGETLKPDLDSWAISHIERRQNHSSVEVSVAWLEAPEGSQLLLVANS
                     DFCHWQPQAKTF"
     gene            complement(7491..7763)
                     /gene="hupA"
                     /locus_tag="OQP62_001978"
     CDS             complement(7491..7763)
                     /gene="hupA"
                     /locus_tag="OQP62_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein HU-alpha"
                     /protein_id="HCS1721541.1"
                     /translation="MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQL
                     VGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK"
     gene            complement(7950..8540)
                     /locus_tag="OQP62_001979"
     CDS             complement(7950..8540)
                     /locus_tag="OQP62_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjaG family protein"
                     /protein_id="HCS1721542.1"
                     /translation="MLQNPIHLRLERLESWQHVTFMACLCERMYPNYAMFCKQTEFGD
                     GQIYRRILDLIWETLTVKDAKVNFDSQLEKFEEAIPAADDYDLYGVYPAIDACVALSE
                     LMHSRLSGETLEHAIEVSKTSITTVAMLEMTQAGREMTDEELKTNPAVEQEWDIQWEI
                     FRLLADCEERDIELIKGLRADLREAGESNIGINFQQ"
     gene            complement(8582..9253)
                     /gene="nfi"
                     /locus_tag="OQP62_001980"
     CDS             complement(8582..9253)
                     /gene="nfi"
                     /locus_tag="OQP62_001980"
                     /EC_number="3.1.21.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease V"
                     /protein_id="HCS1721543.1"
                     /translation="MDLASLRAQQIELASSVCREDRLDKDPPAFIGGADVGFEQGGEV
                     TRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQKPDLLFV
                     DGHGISHPRRLGVASHFGLLVDVPTIGVAKKRLCGKFEPLSAEPGALSPLMDKGEQLA
                     WVWRSKARCNPLFIATGHRVSTDSALAWVQRCMKGYRLPEPTRWADAVASGRPAFVRW
                     QEIQR"
     gene            complement(9263..10327)
                     /gene="hemE"
                     /locus_tag="OQP62_001981"
     CDS             complement(9263..10327)
                     /gene="hemE"
                     /locus_tag="OQP62_001981"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HCS1721544.1"
                     /translation="MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAG
                     DFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTIPDAMGLGLYFEAGEGPRFTAP
                     VTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTVIKKMMYADPQALHLLLDKLAKSVTLYLNAQIKAGAQSVMIFDTWGGVLTGRD
                     YQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIA
                     DARRRVGHKVALQGNMDPSMLYAPPARIEDEVATILAGFGQGEGHVFNLGHGIHQDVP
                     PEHAGAFVEAVHRLSAQYHN"
     gene            complement(10368..11141)
                     /gene="nudC"
                     /locus_tag="OQP62_001982"
     CDS             complement(10368..11141)
                     /gene="nudC"
                     /locus_tag="OQP62_001982"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HCS1721545.1"
                     /translation="MDRIIEKLESGWWIVSHEQKLWLPYGELPHGLAANFDLVGQRAL
                     RIGEWQGEPVWLVLQHRRHDMGSVRQVIDQDAGLFQLAGRGVQLAEFYRSHKFCGYCG
                     HPMHPSKTEWAMLCSHCRDRYYPQIAPCIIVAIRREDSILLARHVRHRNGVHTVLAGF
                     VEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGEIVIDPK
                     ELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYD"
     gene            11234..11722
                     /gene="rsd"
                     /locus_tag="OQP62_001983"
     CDS             11234..11722
                     /gene="rsd"
                     /locus_tag="OQP62_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma D regulator"
                     /protein_id="HCS1721546.1"
                     /translation="MLNQLENLMERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKE
                     SYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQR
                     IMDYYDTSLETAIDHDNCLEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKR
                     PA"
     regulatory      11837..12000
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            12086..13981
                     /gene="thiC"
                     /locus_tag="OQP62_001984"
     CDS             12086..13981
                     /gene="thiC"
                     /locus_tag="OQP62_001984"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HCS1721547.1"
                     /translation="MSTTTLTRREQRAKAQHFIDTLEGTAFPNSKRIYVTGSQHDIRV
                     PMREIQLSPTLIGGSKDNPQFEENEAVPVYDTSGPYGDPEVAINVQQGLAKLRQPWID
                     ARNDSEELDDRSSAYTRERLADDGLDDLRFTGLLTPKRAKAGKRVTQLHYARQGIVTP
                     EMEFIAIRENMGRERIRSEVLRHQHPGMNFGARLPENITPEFVRDEVAAGRAIIPANI
                     NHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWSTRWGADTVMDLSTGRYI
                     HETREWILRNSPVPIGTVPIYQALEKVNGIAEDLTWEAFRDTLLEQAEQGVDYFTIHA
                     GVLLRYVPMTAKRLTGIVSRGGSIMAKWCLSHHKENFLFEHFREICEICSAYDVSLSL
                     GDGLRPGSIQDANDEAQFSELHTLGELTNIAWEYDVQVMIEGPGHVPMHMIQRNMTEE
                     LESCHEAPFYTLGPLTTDIAPGYDHFTSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKE
                     DVKQGLITYKIAAHAADLAKGHPGAQIRDNAMSKARFEFRWEDQFNLALDPFTARAYH
                     DETLPQESGKVAHFCSMCGPKFCSMKISQEVRDYAAAQAIEVGMADMSENFRAKGGEI
                     YLKREEA"
     gene            13981..14616
                     /gene="thiE"
                     /locus_tag="OQP62_001985"
     CDS             13981..14616
                     /gene="thiE"
                     /locus_tag="OQP62_001985"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HCS1721548.1"
                     /translation="MYQPDFPTVPFRLGLYPVVDSVAWIERLLEAGVRTIQLRIKDKR
                     DEEVEADVIAAIALGRCYDARLFINDYWRLAIKHNAYGVHLGQEDLETTDLKAIQAAG
                     LRLGVSTHDDMEIDIALAAKPSYIALGHVFPTQTKQMPSAPQGLAQLARHIERLADYP
                     TVAIGGISLERAPAVLATGVGSIAVVSAITQAADWRAATAQLLAIAGVGDE"
     gene            14609..15367
                     /locus_tag="OQP62_001986"
     CDS             14609..15367
                     /locus_tag="OQP62_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HesA/MoeB/ThiF family protein"
                     /protein_id="HCS1721549.1"
                     /translation="MNDRDFMRYSRQILLGDIAIEGQQKLLNSHVLIVGLGGLGSPAA
                     LYLAGAGIGTLTLADDDDVHLSNLQRQILFTTDDIARSKSQVAQQHLTRLNPDIELVS
                     LQQRLKGDALRHAVARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQVMV
                     LTPPWEQGCYRCLWPDDVEPERNCRTAGIVGPVVGVMGTLQALEAIKLLSGIETPSGE
                     LRLFDGKTSQWRSLALRRASGCPVCGGRHANSIQ"
     gene            15348..15548
                     /gene="thiS"
                     /locus_tag="OQP62_001987"
     CDS             15348..15548
                     /gene="thiS"
                     /locus_tag="OQP62_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HCS1721550.1"
                     /translation="MQIQFNDEPMQCAEGQTVSSLLATLNQLQPGAALALNQQILPRE
                     QWRQHIVQEGDQILLFQVIAGG"
     gene            15550..16320
                     /gene="thiG"
                     /locus_tag="OQP62_001988"
     CDS             15550..16320
                     /gene="thiG"
                     /locus_tag="OQP62_001988"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HCS1721551.1"
                     /translation="MLRIADKTFDSHLFTGTGKFASSQLMVEAIRASGSQLVTLAMKR
                     VDLRQHNDAILAPLIEAGVTLLPNTSGAKTAEEAIFAAQLALEALGTHWLKLEIHPDA
                     RWLLPDPIETLKAAEALVKQGFVVLPYCGADPVLCKRLEEVGCAAVMPLGAPIGSNQG
                     LETKAMLEIIIQQATVPVVVDAGIGVPSHAAQALEMGADAVLVNTAIAVADDPVMMAT
                     AFRLAVEAGLLARQAVPGNRSTYASATSPLTGFLEALA"
     gene            16317..17450
                     /gene="thiH"
                     /locus_tag="OQP62_001989"
     CDS             16317..17450
                     /gene="thiH"
                     /locus_tag="OQP62_001989"
                     /EC_number="4.1.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HCS1721552.1"
                     /translation="MKAFTDRWRQLEWDDIRLRINGKTAADVERALNASRLNREDMMA
                     LLSPAAADYLEPMAQRAQRLTRQRFGNTVSFYVPLYLSNLCANDCTYCGFSMSNRIKR
                     KTLDEVDIQRECDAIRKLGFEHLLLVTGEHQAKVGMDYFRRHLPTIRRQFSSLQMEVQ
                     PLSQENYAELKTLGIDGVMVYQETYHEAIYAQHHLKGKKQDFFWRLETPDRLGRAGID
                     KIGLGALIGLSDNWRVDCYMVAEHLLWMQKHYWQSRYSVSFPRLRPCTGGVEPASVMD
                     EKQLVQTICAFRLLAPEIELSLSTRESPWFRDHVIPLAINNVSAFSKTQPGGYADDHP
                     ELEQFSPHDDRRPEVVASALSAQGLQPVWKDWDSWLGRASQMR"
     gene            complement(17531..17746)
                     /locus_tag="OQP62_001990"
     CDS             complement(17531..17746)
                     /locus_tag="OQP62_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017466138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721553.1"
                     /translation="MDKNDQQTRLEEGPPAKLQSGTLPENFKFTAISIIQWPAPGRQL
                     LMKGRRLGKNEEGIICPGQLPLLTMTK"
BASE COUNT         4058 a         5137 c         4854 g         3861 t
ORIGIN      
        1 caaccctgaa tttcaggatt tttctcttca accgaccggc tgtttgtgtg aagtgattca
       61 catccgccgt gtcgatggag gcgcattata gggagttatc tgctgaccgc aatagaaaaa
      121 ttgcagaaaa atgactgttt gctgcattcc ccagcaaaac ccttggttat acccatttac
      181 gcacagactt atccacaaaa tgcgcgttca tttcctcgat cttctcactc tgcaaacgat
      241 ctttcaggga taaaagcggg gccagaattt aaagagaaaa attcgcgagc gttgcgcaaa
      301 cgttttcgtt acaatgtcgc cgcaaaatga gaatgcccca taaggagcgt tagctgagtt
      361 tttcacgaaa aattcagcta acgctctcta taatcgtcaa atccagggga tttaccatgc
      421 aacaacgtcg tccagtccgc cgcgctttgc tcagtgtttc tgacaaggcc ggtatcatcg
      481 aattcgccca ggcactttcc gcacgcggtg tggagctgct gtctacgggg ggcaccgccc
      541 gcctgttagc agaaaaaggc ctgccggtga ccgaagtttc cgattacacc ggtttcccgg
      601 aaatgatgga tggacgcgta aagaccctgc atccaaaagt acacggtggc atcctcggtc
      661 gtcgcggtca ggacgatgcc attatggaac agcaccacat cgcccctatc gatatggttg
      721 tcgttaacct atatccgttc gccgaaaccg tggcacgcga aggctgctcg ctggcagatg
      781 cagtagagaa cattgatatc ggcggcccga ccatggtgcg ctctgctgct aagaaccata
      841 aagacgtcgc catcgtggtg aagagcagcg actacgacgc cattattaaa gagatggatg
      901 ctaacgaagg ttctctgacc ctcgacaccc gtttcgatct cgcgattaaa gccttcgaac
      961 acaccgccgc ctacgacagc atgatcgcca actacttcgg cagcatggtt ccggcctacc
     1021 acggtgaaag caaagaagcc gccggtcgct tcccgcgtac gctgaacctg aacttcatta
     1081 agaagcagga tatgcgctac ggcgagaaca gccaccagca ggctgccttc tatatagaag
     1141 agaatgtgaa agaagcatcc gttgccaccg cacagcagat tcagggcaaa gcgctctctt
     1201 ataacaatat cgccgatacc gatgcggcgc tggaatgcgt gaaagagttc aacgagccag
     1261 cctgcgtgat cgtcaagcac gccaacccgt gcggcgtggc ggtaagtacc tcgattctcg
     1321 atgcttatga ccgtgcgtat aaaacagacc cgacctccgc gttcggcggc attatcgcct
     1381 tcaaccgcga gctggatgcc gaaaccgcgc aggccatcat ctcccgtcag ttcgtggaag
     1441 tgctcatcgc cccatccgca agcgaagaag cgctgaaaat cacctcagcc aagcagaacg
     1501 tccgtgttct gacctgcggc caatgggcaa gccgcgttcc gggcctggat ttcaaacgcg
     1561 ttaacggcgg tctgctggtt caggacaggg atctgggtat ggtgagcgaa gctgaactgc
     1621 gcgtggtgtc caaacgccag ccgaccgagc aggaactgcg cgatgcgctg ttctgctgga
     1681 aggtagccaa gttcgtgaaa tccaacgcca ttgtgtatgc caaagagaac atgactatcg
     1741 gcataggcgc aggccagatg agccgcgtgt actccgcgaa aatcgctggc attaaagcgg
     1801 ctgacgaagg tctggaagtg aaaggctctg ctatggcttc cgacgcgttc ttcccgttcc
     1861 gtgatggcat tgatgccgct gccgctgtcg gcgtgagctg cgttatccag cctggcggtt
     1921 ctatccgtga tgatgaagtc attgccgccg ccgacgaaca cggcattgcg atgatcttca
     1981 ccgacatgcg ccacttccgc cattaattca gggagcagac gatgaaagtt ttagtcattg
     2041 gtaacggcgg gcgcgaacat gcgctggcct ggaaagccgc acagtcgccg ctggttgata
     2101 ccgtttttgt cgcaccgggt aacgccggta ccgcgctgga gcccgcgttg cagaacgtgg
     2161 ctatcggcgt caccgatatt ccggcgctgc tgagctttgc ccagaacgag aagattgatc
     2221 tgaccatcgt cggtccggaa gcgccgctgg tgatcggcgt ggtcgatgcg ttccgcgcgg
     2281 cgggtctgaa gatctttggc ccaaccgaag gagccgcgca actggaaggc tccaaagcgt
     2341 tcaccaaaga tttcctcgcc cgtcatcaga ttccgacggc ggaataccag aatttcaccg
     2401 agattgagcc tgccttggct tatctgcgtg agaagggcgc gccgatcgtc atcaaggccg
     2461 atggtctggc tgcgggcaaa ggcgtcatcg tggcgatgac gctggaagaa gccgaagccg
     2521 ccgttcatga catgctggca ggcaacgcct ttggcgacgc gggccaccgt atcgtgattg
     2581 aagagttcct cgacggcgaa gaagcgagct ttatcgtgat ggtcgacggc gagcacgtgc
     2641 tgccgatggc caccagccag gatcacaaac gcgtaggcaa cggcgatacc ggcccgaata
     2701 ctggcggcat gggtgcttac tccccggcgc cggtggtgac tgatgaagtg caccagcgca
     2761 ccatggaacg catcatctgg ccaaccgtga aaggcatggc agcagaaggt aacacgtaca
     2821 ccggcttcct gtatgcgggt ctgatgatcg acaagcaggg caacccgaaa gttatcgagt
     2881 tcaactgccg cttcggcgat ccggaaaccc agccgatcat gctgcgcatg aaatcggatc
     2941 tggtggatct ttgcctggcc gcctgtgacg gcaagctgga tgagaaaacc tccgagtggg
     3001 acgaacgcgc ttcattaggc gtggtgatcg ccgcgggcgg ttatccgggc agctacagca
     3061 ccggcgacga gatccacggt ctgccgctgg aagaagtggc tgacggtaag gttttccacg
     3121 cgggcaccaa actcgccgat gacgaccgcg tgttgaccag cggcggtcgc gtactgtgcg
     3181 ccaccgcgct gggccacacc gtggccgaag cgcagaaacg cgcttacgcc ctgatgaccg
     3241 acatccgctg ggacggcagc ttcagccgta acgacattgg ctggcgcgcc attgagcgtg
     3301 agcaaaacta acggctgagt ttagccagca gcgttttgcg cgtaatgccc aattgacggg
     3361 cggcttccgt tttgttgccg cccgtttttt ccagcgccgc cagaatcacc tctttctcca
     3421 catcgaccaa cggttggatt tcggcgctgt tttccgcttt tatcggcgtc gcggcaatag
     3481 cgagaggcaa ttcgcgttca gaaatgtatt ctcccgtcag caacaccacc gctcgttcga
     3541 tagcgttttc cagctcacgg atattacccg gccagtcgta gtggatcagc agatccatcg
     3601 cctgcggcgt aaaccccttc accgcttttc ggttacgttc ggcaaaacgc cgcagaaaat
     3661 ggtctgccag tagcggaata tcttcccgac gctggcgcaa agaaggcatt tcaatcgcca
     3721 ccacattcag gcggtaatag agatcctggc gaaagcgacc ggcactcacc tcttccgcca
     3781 ggtcgcggtg ggtagcggca attaaccaaa catccacaga tatcgtctgg ttacttccca
     3841 cgcgttgcac ttcgcgctcc tgaatcgccc gcagcaaacg tacctgcatt aacggcgaga
     3901 tatcgccgat ttcatcaaga aacaatgtcc cgccgtcagc ttcgacaaag cgtccctccc
     3961 gacgtttatc cgcgccggta aacgcgcctt tttcgtgtcc gaacagctca gactccagca
     4021 gcgattcatt aagcgccgcg cagttgagcg tgaccagcgg tttatcgctc ctggcgctac
     4081 aggcgtgcag cgcccgcgcc accagctctt tacccgtgcc ggagtctccg tgaatcaata
     4141 ccgtggcgtc tgatggtgcg accatcgcga tttcattcaa taaatgttgc atcgccgggc
     4201 tgctgccaat catgccaaat tgcgcagccg acgccgatgg caattcagcg cccgtttccc
     4261 gcgtatgcgc caacgccttt tccagcgtct cctgcagacg gtcaaaatcc agcggtttaa
     4321 ttaaatagtc gagcgcgccg gctttcaacg cctctaccgc cgtttccacg ctggagaatg
     4381 ccgtcataat caaaatcgga atggcggggt tgagcgcttt aatctccttc agcgtggcga
     4441 taccgtccat ctccgccata cgcacatcgc acagtaccag atcaaagact ttctcacgca
     4501 cctgagccaa cgcatcatgc ccactgtagg ccagagcgac gttatagccc cagccccgaa
     4561 gcagcgcctg taaaatcgtg cagtggctta catcatcatc cacaaccaga atatcgattt
     4621 ttccgcgtat cacccttgtt aatcctgttg tctcgctatc actggcaacc agatagtaaa
     4681 gaccgcgcct ttaccctcaa tacttttcac cttaatcgcg ccgccatgct gttcgatgat
     4741 attttgcacc accgccagcc ccaggcctgt cccgtcagct ttggtcgtaa aataaggtgt
     4801 aaaaatcgcc tccagctgat ccggggcaat ccctttcccg ctatcggtaa cagtgatgat
     4861 aacgcggtcg gtcccacttt cttttgcctc tacggtaatc gttccctggc ggccaatcgc
     4921 atgaatagcg ttcaggtaca aattcaacag cacctgagtc agcctgtccg ggtcagcctg
     4981 aatacgctta agcgtctcat tcgccgtgaa tctcaactga atctctctgc tttgggcatc
     5041 ctgactgacc agattcaggg agtgagtaat aatatcattg aggttaaccg cctggagcgt
     5101 cagatgcgcg ggctttacca gttcgagcaa ttcgcttacc acccggttca aacggtcggc
     5161 ctctttggcc atcacctgcg ccagttcatg cgactcgccg ccggcaggcg tgcgctcggc
     5221 aaagtatttc gccagccctt tgatggacga gagcgggtta cgaatttcgt gcgcgacgcc
     5281 cgccgccaga tgccccatcg ccaccagctt ttctttacgc ttcattgcat caagcagttc
     5341 tctgtgcgag cgctgataac gctgatacca aaaaaacgcc agtaacgttg ccaacagcac
     5401 cgccgctaac gcagacaaaa caatcagcgt attacgccac tcccttgcct gagtcgcggc
     5461 cagctcgctg gcgtcaaagg caataaaaat agtttgtttc gctggttcgt cgtcattggc
     5521 gctacgcgcc atgccgtgcc ccctcatacc gtgacctctc ataccgaaaa gcggctggaa
     5581 ctgacggtaa atttccagcg caggcaccgt ctcgccgtta gcagcaacgt cgacacgccg
     5641 ccaacactcc tgcggcccgg ggtttagttg atgcatttca gatggggaat agagcgactt
     5701 gcccaccatg ccagggttgc tatgagtgat gattaccccc tgtgcatccg ttacagcgaa
     5761 ccacaacacg cctggctgac ccgccatctc ttccagcaat gtctgctgct gcgcgtgatg
     5821 catccgcatt cccataccta ctcgcgtgcc ggactccaga gcgcgaatga gtacatttcc
     5881 cttttccagc agcgtctgcc tggcggcagc gctctcacgg ccatagtcgc gaatgaccat
     5941 aatggaaaat agccccacca gaatgaagat cgccgcaggt aacagccgac tcaaccacat
     6001 tgcagcggca tctttatgta atcgtataaa actcacaggc ttccccggct cgtttttatt
     6061 ttccttactt aagcagagat catgccattc ttcgctccgc ataaccgcgc gttgtcgcac
     6121 accctttcgg atacggatgg gtaaaaatga ctcgccaggc gggtcatgcg agtcattttt
     6181 actcgctttt tgccgcctga agcgggttaa ctcgctgccc gacaaggaat agttacctgg
     6241 cacggaagat gcaagagaga ggataagatg agcaacagga gaacgcaaaa tgaaacggaa
     6301 caataaatca gctatcgcgc taatcgccct ctctcttttg gccctgagct ccggcgccgc
     6361 cttcgccggg catcactggg gcaacaatga cggtatgtgg caacagggag gtagcccgtt
     6421 aaccacggaa cagcaggcga cggcgcagaa gatttatgat gattactata cgcagaccag
     6481 cgcgctgcgc cagcaactga tatccaaacg ttatgaatac aacgcgctac tgaccgccag
     6541 ttcgccggat actgcgaaaa ttaacgcggt tgccaaagag atggagtcat taggccagaa
     6601 gttagatgag caacgcgtga aacgggatgt cgcgatggcg caggctggca taccacgcgg
     6661 cgcaggaatg ggctatggcg gttgcggcgg ctatggcggc ggttatcatc gcggcggcgg
     6721 tcatatgggt atgggaaact ggtaaagcat gtttgccgaa tggcggcttc gccattcggt
     6781 attccatcaa aaggttttcg cttgcggctg ccagtgacag aaatctgaat tcgccaccag
     6841 caaaagttgc gatccttccg gcgcctccag ccatgctacg ctcacctcta ccgatgagtg
     6901 gttctggcgg cgctcaatgt ggcttattgc ccaagaatcc agatccggtt tcagcgtttc
     6961 accttcacag gtggttaccg tatggtcggc gtgccagcgt ccctggcgta gtatgacccg
     7021 ccccaggcgc aatgcgtcgc tggtctgacg gatttgttcg gcacgatagc gatacaaggc
     7081 aatctgatcg ttggaaagct gctgcttctg ccccccgact tcacgctgca taaaactgag
     7141 ttcgccatga gcgtcgaaac gcgcgcgaat atgttctggc ggtttgctgt aaatattgag
     7201 ttcaataagc gaaagcgtat caccctgcca acgatattcg ctggtcgtcg tgctaccact
     7261 atgccacggg ctaaaaacag aaagcagatg gacttcatcg ttcgtatctt tacgccagat
     7321 acgcaccgcg ccgtgatcgc cggcaaagcc gctggcagta aacggaggcg gtgaagcgtt
     7381 atgactgcag gcagtcagca acagcgcgcc agaaaacaga aacgcgcgac gccagacgga
     7441 caaaaggggc tgacaagccc cttcgataaa actgttcaca gttacgcgtc ttacttaact
     7501 gcgtctttca gagctttacc agaaacaaac gccggtacgt tagcggcggc gattttgatt
     7561 tctttaccgg tctgtgggtt acggccagtg cgctcagcac ggtggttcac tttgaaggta
     7621 ccgaaaccaa ccagttgtac agcatcgcct tctttcagag actcagtaat agcagccaga
     7681 gtggattcca gagcagcttt agcctgggtt ttggacagtt ctgctttgtc tgcaattaca
     7741 tcaatcagtt gagtcttgtt cataagttat ccttacaatg tgtttatcgc ttgctaagca
     7801 tcgagtgcga cggaaatgcc agaaaagcac tctcctgcat acacgcaccg atagccactt
     7861 tttttcgcct cccaaatgta gaccagacgg ggggcataag ggaagcctta tggcacgaca
     7921 aatcagacgt taaatcacgt tttctggtgt cattgctgaa aatttatacc gatattgctc
     7981 tcgccagcct cgcgcaggtc tgccctgagc ccttttatca gttcaatatc acgttcttcg
     8041 cagtcggcta aaagtcggaa tatttcccac tgaatatccc attcctgttc aacggcaggg
     8101 ttcgttttga gctcctcatc ggtcatttcc cgaccagcct gagtcatttc caacatcgct
     8161 accgtagtaa tggaagtctt actaacctca atagcatgtt ccagcgtttc gccgctaaga
     8221 cgagaatgca ttaattcgct taatgcgacg caggcatcaa tcgccgggta aacgccgtac
     8281 aaatcatagt cgtcggctgc cggaattgcc tcttcaaact tctccagttg gctatcgaaa
     8341 ttgacctttg catctttcac cgtcagggtt tcccagatca gatccagaat gcgacggtag
     8401 atctgtccgt cgccgaattc cgtctgcttg caaaacatgg cgtagttcgg gtacatgcgc
     8461 tcgcacaagc aggccataaa ggtaacgtgc tgccaacttt ccagccgctc cagccgcaaa
     8521 tgaatcgggt tttgtaacat gatggaatct cgaatcggaa attagcggca gtttacctga
     8581 atcagcgctg aatttcttgc caacgaacaa acgccggacg cccggaagcg acggcatccg
     8641 cccagcgcgt cggctccggc aggcgatacc ctttcataca gcgctgtacc cacgccagcg
     8701 cgctgtcagt actgacccgg tgccctgtcg cgataaacag cggattacag cgcgccttgc
     8761 tgcgccatac ccacgccagt tgctcgcctt tatccattaa ggggctaagt gcgccaggtt
     8821 cggcggaaag tggttcaaat ttaccgcata gccgtttttt cgccacgccg atggtcggca
     8881 cgtccaccaa cagtccaaaa tgactggcga cgccaagccg acgcggatgc gaaataccgt
     8941 gaccgtccac aaacagcaaa tcgggctttt gcgagagctg ttcccacgct gccagcagcg
     9001 caggatattc acgaaaagag agaaagccgg ggatatacgg catggtggtg gcaatacgcg
     9061 ccaccttgta ctctactagc tcaagcgacg gatatttcag caataccatc gccgcccgcg
     9121 tcacctcgcc gccctgctca aaaccgacgt ccgccccgcc gataaacgct ggcggatctt
     9181 tgtccaggcg atcttcgcgg caaactgatg aagcaagttc tatctgttga gcgcgtagcg
     9241 acgcgagatc catactaact ccttagttgt gatactgcgc agaaagtcgg tgcactgcct
     9301 ccacaaatgc gccagcatgt tctggcggca catcctgatg gatgccatgt ccaaggttaa
     9361 agacgtgccc ttctccctga ccgaaaccag caagtatagt cgctacctcg tcttcgatcc
     9421 gtgccggcgg cgcatacagc atggacggat ccatattgcc ctgcagcgcc actttatggc
     9481 caacgcgacg gcgcgcatcg gcgatatctg tcgtccagtc gagacccagc gcatcgcagc
     9541 cggtttccgc catcgcctcc agccactgac cgccaccttt agtgaacagc gttaccggca
     9601 cgcggcgacc gtcgttttca cgcagcaggc catcgacgat tttatgcatg tagtagaggg
     9661 agaactgctg gtaatcgcgg ccagtcagca cgccgcccca ggtgtcgaaa atcatcaccg
     9721 actgcgcgcc cgctttgatt tgcgcgttga ggtacagcgt gacgcttttc gccaacttat
     9781 ccagcagcag atgcaacgcc tgcgggtcag cgtacatcat ctttttaatc accgtgaagg
     9841 ctttgctact gccgccttcc accatgtaag tcgccagcgt ccacgggctg ccggagaagc
     9901 cgatcagcgg aacctcgcct tttagttcgc ggcgaatcgt gcgtaccgca ttcatcacgt
     9961 agcccagttc atcctccgga tcgggaatgg gcagcttatc gacatcggct ttgcaggtga
    10021 caggggccgt aaagcgcggg ccttccccgg cttcaaaata gagccccagg cccatcgcgt
    10081 ccggaatcgt caggatatcc gagaaaagga tcgccgcatc aagcggataa cggcgcagcg
    10141 gctgtaaagt gacttcgcag gccagttcgg catttttgca cagcgacata aaatcgcccg
    10201 cctgagcgcg agtggctttg tactccggta gataacggcc cgcctggcgc atcatccaca
    10261 ctggcgtaac atcaacgggc tggcgcagca gcgcacgtag ataacgatcg tttttgagtt
    10321 cggtcatttt tacattcctt tagcgttgat gcgcccagtg taacatgtca gtcgtattca
    10381 gcccgacaca ttgccaccgt atcttcgatc aaacggcgcg cgacggtgcc cggcggcggc
    10441 agtagcggca gatcgtcata acggtaccaa tttgcttcca acagttcttt cgggtcgatg
    10501 acaatctcgc cgctgtcata ctctgccata aacgccgtca tcagcgactg tgggaacggc
    10561 cacggctgcg aggtcacgta gcgcagattt ttcaccttga tcccgctttc ctccatgact
    10621 tcgcgcgcca cagcctgctc cagggtttcg ccgacttcaa caaacccggc cagtaccgta
    10681 tgcacgccgt tgcggtggcg aacgtgccgg gcaagtagaa tagaatcctc acggcgaatg
    10741 gcaacaataa tgcagggggc gatttgcggg tagtaacgat cgcggcaatg gctgcacagc
    10801 atcgcccatt cggttttact cgggtgcata gggtgcccgc aatagccgca aaatttatgc
    10861 gaacgataaa actccgccaa ctgtacgcca cgtcccgcca gttgaaacag cccggcatcc
    10921 tgatcgataa cctggcgaac cgatcccata tcatgacgtc gatgctgtaa caccagccag
    10981 acgggctcgc cttgccattc acctatccgg agtgcgcgct gccccacaag atcgaaattt
    11041 gccgccagcc cgtgtggtaa ttccccatac ggcaaccata atttttgttc atggctgacg
    11101 atccaccagc cactctctaa tttttcaatt atacgatcca tagctattgc actacctttg
    11161 cttcactggc atgttgttaa cattattttt acattcatgg cgagcagcct ttatctaact
    11221 tgcggagaca atcatgctaa accagctgga aaacctgatg gagcgcgttg gcggaagcaa
    11281 caaactggtc gatcgctggc tggatgtacg taagcacctg ctcgtggctt actacaatct
    11341 ggttggcatt aagcctggca aagaatcgta catgcggctg aatgaaaaag cgctggatga
    11401 tttttgtcag agcctggtcg attacctttc cgccgggcac ttcagtattt atgaacgtat
    11461 tctccataaa ttggaaggaa acggtcagct tttacatgcg gcaaaaattt ggccgctgct
    11521 ggaagataat acgcagcgca ttatggatta ttacgacacc agcctggaaa ctgccatcga
    11581 tcacgataat tgtctcgaat ttcaacaagc tctgtcagat atcggcgaag cgctggaagc
    11641 ccgctttgtg ctggaagaca agctgattat gctggtgttt gacgcgatgc acgacggcgc
    11701 cagagtcaaa cgtcccgctt gagttctgcg cgagtaacag gtagtttact tcagccccct
    11761 cttcggaggg gcggttatct tgtcggagtg ctaattttcc acaaaagcgt tcgtgatgcg
    11821 tcaaggcggc aagtcggtga atctccagga gcttacataa gtaagtgact ggagtgagcg
    11881 gacgaagcca acgaagaggc agcgcgaagg atgaagtgga aaaggctgag accgttaatt
    11941 cgggatccgc ggaacctgat caggttaata cctgcgaagg gaacaagagt aattctgctt
    12001 tatgctgctg cctttacggg cggcgcacat ccattactcc atccgtcgtc tgacaagcca
    12061 cgtccttaat tttttggaat gagctatgtc tacaacaacg ttaacccgcc gcgagcagcg
    12121 cgctaaagcc cagcatttta tcgatacgct ggaagggact gcctttccca actcgaaacg
    12181 catctacgtg accggttcgc agcatgatat tcgcgtaccg atgcgcgaaa ttcaacttag
    12241 ccctacgctc atcggcggca gtaaagacaa cccgcagttt gaagagaacg aagccgtacc
    12301 ggtatacgac acctccggcc cctatggcga tcctgaagtg gcgattaacg tccagcaggg
    12361 tctggcgaaa ctgcgccagc cgtggattga cgcacgtaac gatagcgaag aattagacga
    12421 ccgtagctcg gcttacacca gagaacgtct ggccgacgat ggcctggacg atctgcgttt
    12481 taccggcctg ctgacgccga aacgcgctaa agcgggcaag cgcgtcaccc agttacacta
    12541 cgcccgccag gggatcgtca ctcccgaaat ggagttcatc gccatccgtg aaaacatggg
    12601 ccgcgagcgc attcgcagtg aagtgctgcg ccaccagcat ccgggcatga actttggcgc
    12661 gcgcctgccg gaaaacatta cgccggaatt cgtgcgtgat gaagtcgccg cgggccgcgc
    12721 gattattccc gccaacatca accacccgga atcggagccg atgattatcg gccgcaactt
    12781 cctggtcaaa gtgaatgcca acatcggtaa ctcggcggtc acctcctcca tcgaagaaga
    12841 ggtcgagaag ctggtgtggt caacccgctg gggcgcggac acggtgatgg acctctccac
    12901 cggtcgctat attcacgaaa cccgcgaatg gatcctgcgt aacagcccgg taccgatcgg
    12961 caccgtcccg atctaccagg cgctggaaaa ggtcaacggg atcgccgaag atctcacctg
    13021 ggaagcgttc cgcgacacgc tgctggagca ggccgaacag ggcgtcgact acttcaccat
    13081 ccacgccggc gtgctgctgc gctacgtgcc gatgaccgcc aaacgcctga ccggtattgt
    13141 ctcgcgcggc ggttcgatca tggcaaagtg gtgtctctcc catcacaaag agaacttcct
    13201 gttcgaacat ttccgcgaga tttgtgaaat ctgctccgcc tacgacgttt ccctgtcgct
    13261 gggcgacggc ctgcgccccg gctccattca ggacgccaac gacgaagcgc agttctccga
    13321 gctgcatacg ctgggcgagc tgaccaatat cgcctgggaa tacgacgtgc aggtgatgat
    13381 tgaaggcccg ggccacgtgc cgatgcatat gattcagcgc aacatgaccg aagagctgga
    13441 gagctgccac gaagcgccgt tctacacctt agggccgttg accaccgata tcgcgccggg
    13501 ctatgaccac ttcacctctg gcattggcgc ggcgatgatc ggctggtttg gctgcgcgat
    13561 gctgtgttac gtgacgccga aagagcatct cggcctgccg aacaaagaag atgtgaagca
    13621 ggggctgatc acctacaaaa tcgccgccca cgccgcggat ttagccaaag gacatccggg
    13681 cgcgcagatc cgcgataacg ccatgtcgaa agcgcgcttt gaattccgct gggaagatca
    13741 gtttaacctc gcgctcgacc cgttcaccgc ccgcgcttat cacgatgaaa ccctgccgca
    13801 ggagtccggt aaggtcgccc acttctgttc catgtgtggg ccgaagttct gctcaatgaa
    13861 aatcagccag gaagtgcgtg attacgccgc cgcgcaagcc attgaagtcg gcatggcgga
    13921 tatgtcggag aacttccgcg ccaaaggcgg cgaaatttat ctcaaacggg aggaagcctg
    13981 atgtatcagc ctgatttccc aaccgtgccg ttccgcctcg ggctttaccc ggtggtggac
    14041 agcgttgcat ggattgaacg cctgctggag gcgggcgtgc gcaccatcca gttgcgtatc
    14101 aaagataagc gcgatgaaga ggtggaagcc gacgttatcg ccgccatcgc gctggggcgt
    14161 tgttatgacg cccgcctgtt catcaatgat tactggcgtc tggcaattaa gcacaacgcc
    14221 tacggtgtac atttgggcca ggaagatctc gaaaccactg acctgaaggc gattcaggcg
    14281 gcggggttac gcctgggcgt atcgacccac gatgatatgg agatagacat cgcactcgcc
    14341 gctaagcctt cttatatcgc gctgggtcat gtattcccca cgcaaaccaa gcagatgcct
    14401 tccgccccac aggggctggc gcagctggcg cggcatattg aacgactggc ggattatccc
    14461 accgtcgcta tcggcggcat cagccttgaa cgcgctccgg cggtactagc gaccggcgtc
    14521 ggcagtattg ccgtggtcag cgccattact caggctgccg actggcgcgc cgctaccgcg
    14581 cagttactgg caatcgcggg agtgggcgat gaatgaccgc gattttatgc gctacagtcg
    14641 gcaaatcctg ctcggcgata tcgcgattga aggccagcaa aagctgctca atagccatgt
    14701 attgattgtc ggcttaggcg gattgggttc gcctgccgcg ctgtatctgg cgggagcagg
    14761 catcggcaca ctgacgctgg cggatgatga cgatgttcac ttgagcaatc tccagcggca
    14821 aattctgttc accaccgacg atatcgcgcg ttcgaaatcc caggttgccc agcagcacct
    14881 gacacggctc aacccggata tcgaactggt atcactccag cagcgactaa aaggcgatgc
    14941 gctccggcat gcggtagcgc gtgccgacgt ggtgctcgac tgtaccgaca acatggcgac
    15001 ccgtcaggaa attaacgccg cctgcgtggc actcaacact ccgttaatta ccgccagcgc
    15061 cgttggtttt ggcggccaag tgatggtcct cacgccgccg tgggaacaag gctgttaccg
    15121 ctgcctgtgg ccagatgatg tggagcctga acgcaactgc cgtaccgccg gtatcgtcgg
    15181 accggttgtt ggcgtgatgg gcaccttaca ggcgctggaa gcgattaaat tactcagcgg
    15241 tattgagacg cccagtggag agctacgcct gtttgacggt aaaaccagcc agtggcgcag
    15301 cctggcgctg cgtcgtgcca gcggctgtcc ggtatgcgga gggcgacatg caaattcaat
    15361 tcaatgacga gccgatgcag tgcgccgaag ggcaaaccgt cagcagccta ctcgctacgc
    15421 ttaatcagct tcaaccgggc gcggcgctgg cgctcaatca gcagatcctg ccacgcgagc
    15481 agtggcggca acatatcgtg caggaaggcg accagatcct gctttttcag gttattgcag
    15541 gaggttgaga tgttacgtat tgccgacaaa acgtttgatt cacatctgtt caccggtacc
    15601 gggaagtttg cctcatcgca actgatggtc gaggcaattc gcgcttccgg cagccaactg
    15661 gtgacgctgg cgatgaagcg cgtggacctg cgccagcaca atgatgcgat tctggcgccg
    15721 ctgattgaag cgggcgtcac gctgctgccc aatacctccg gggcgaaaac cgccgaagag
    15781 gcgatcttcg ctgcccagct ggcgctcgaa gcgctgggca cccactggct gaaattagaa
    15841 atccacccgg acgcccgttg gctgctgccg gatccaatcg aaacgctgaa agccgccgag
    15901 gcgctggtga agcaaggttt tgtggtgctg ccctactgcg gcgcggatcc ggtgttgtgc
    15961 aagcggctgg aagaggtcgg ctgcgcggcg gtgatgccgc ttggcgcgcc tatcggttcg
    16021 aatcaggggc tggaaaccaa agcgatgctg gagattatta tccaacaggc gaccgtgccg
    16081 gtggtggttg atgcgggcat tggcgtgccc agccatgccg cgcaggcgct ggaaatgggc
    16141 gctgatgcgg tgctggtcaa cacggcgatt gccgtggcgg acgatccggt gatgatggca
    16201 accgctttcc gtctggcggt ggaagccgga ttactggcgc gtcaggcggt gccgggtaat
    16261 cgtagcacct acgccagcgc taccagcccg ctcaccggat ttctggaggc gttagcatga
    16321 aagccttcac cgaccgttgg cggcaactgg agtgggacga tattcgcctg cgcatcaacg
    16381 gtaaaaccgc cgccgatgtg gagcgggcgc tgaatgcttc acgcctcaac cgcgaggata
    16441 tgatggcgtt gctctccccc gccgccgccg attatctgga accgatggcg cagcgggcac
    16501 aaaggctgac ccgacaacgc tttggcaaca ccgtcagttt ctacgtgccg ctctatctct
    16561 caaacctctg tgccaacgac tgcacctact gcggcttctc tatgagcaac cgcatcaagc
    16621 gtaagacgct ggatgaggtg gatattcaaa gggagtgcga tgctatccgt aaactgggtt
    16681 ttgagcatct gctgttagtc accggcgagc atcaggccaa agtcggcatg gactattttc
    16741 gccgtcattt acccaccatc cgccgtcaat tttcctcttt acagatggaa gtccagccct
    16801 tgtcgcaaga aaactacgcg gagctcaaaa cgctggggat cgatggcgtg atggtttatc
    16861 aggaaactta ccatgaggca atctatgcac agcatcacct gaagggaaag aaacaggact
    16921 ttttctggcg gctggaaacg ccggatcggt taggccgggc aggtatcgac aaaatcggtc
    16981 ttggcgcgct aattggtctg tcggacaact ggcgggtgga ttgctatatg gtggcggagc
    17041 atctgttgtg gatgcagaaa cactattggc agagtcgcta ttctgtttcc ttcccgcgtc
    17101 tgcgtccgtg taccggcggt gtggaacccg catctgtgat ggatgaaaag caactggtgc
    17161 aaacgatttg cgcgtttcgt ttactggcgc cagaaattga attatcactc tccacccgcg
    17221 aatcgccgtg gtttcgagac catgtgattc ctctggcaat caacaacgtc agcgccttct
    17281 cgaaaaccca gcccggtggc tacgctgacg atcatccgga actggagcag ttttctcccc
    17341 acgatgaccg tcggccagaa gtcgttgcaa gcgcgttaag cgcgcaaggg ttacagcccg
    17401 tatggaaaga ctgggacagt tggctggggc gcgcttcgca aatgcggtga acccgtatgt
    17461 aaacgcatta atatttcacg agcgagtacg taatgtgaaa aacgggagat tgttatcggc
    17521 ctcccgtttt ttattttgtc atcgtcagca acggaagctg accagggcaa attatccctt
    17581 cctcattttt gcccagcctt ctccccttca tcagtaactg acgaccgggg gctggccact
    17641 ggattatcga aatagcggtg aacttgaagt tttcgggcag cgttcctgac tgtaatttcg
    17701 ctggcggccc ctcttccaac cgtgtctgct gatcgttttt gtccataaaa tgatgcccca
    17761 gaacaacggg aatcaggggc gaacccatca gggaaaaatg tgttgcggcc ggacgccgat
    17821 ggtaacgtta cttgatggaa aacgcatctg ggctgagaaa aatttaagcc agatgtaatc
    17881 tgacagatat ctgtataaat aaccggtaac
//
LOCUS       DAJVSD010000071        17821 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.071, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000071 DAJVSD010000000
VERSION     DAJVSD010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 17821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17821
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.071"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(19..3903)
                     /gene="entF"
                     /locus_tag="OQP62_001991"
     CDS             complement(19..3903)
                     /gene="entF"
                     /locus_tag="OQP62_001991"
                     /EC_number="6.3.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin non-ribosomal peptide synthetase
                     EntF"
                     /protein_id="HCS1721554.1"
                     /translation="MTQRLPLVAAQPGIWMAEKLSDLPSAWSVAHYVELNGELDAPLL
                     AKAVAVGMQQADTLRMRFTEENGEVWQWIDPEHTFGEPPIADLRDQPDPHLAALALMQ
                     ADLRQNLRADSGKPLAFHQLIRIDDTRWYWYQRYHHLLVDGFSFPAITRQIAAIYRAW
                     QSDAPTPESPFTPFVDVVEEYQRYRQSEAWQRDGAFWAQQRRELPPPASMSAAPLPGR
                     SASADILRMKLSAPAGAFRQLAAHMPEIPRADLALALVTLWLGRLCGRMDYAAGFIFM
                     RRMGSAALTATGPVLNVLPLAVNLHATEDLPTLAKRLAAQLKKMRRHQRYDAEQIVRD
                     SGRAAGETPLFGPVLNIKVFDYHLDFPGIQAQTHTLATGPVNDLELALFPDENGGLDI
                     ELLANAQRYDDATLSRHALRLMALITQFADNPALRCGDAQMLLAEEQTQLTHLNNTAV
                     TIPAATLSDLVAQQAQKTPEASALADAHYHFTYREMREQVVALAYALRERGVQPGDSV
                     AVALPRSVFLTLALHGIVEAGAAWLPLDTGYPDDRLRMMLEDAQPKLLITTQAQLARF
                     HDIPGMEYLCYSQPLPVSDATPLGLSLPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRL
                     LWMQDHYPLTADDVVAQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQRFF
                     AQYGVTTTHFVPSMLAAFIASLTPASAGKSCASLKRVFCSGEALPTALCREWETLTNA
                     PLHNLYGPTEAAVDVSWYPACGDELAAVDGNSIPIGYPVWNTGLRILDAHMQPVPPGV
                     AGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDSGVVEYLGRS
                     DDQLKIRGQRIELGEIDRVMQTLPDVEQAVAHACVFNQAAATGGDARQLVGYLVSHSG
                     LPLDLPALQDKLRQKLPAHMVPVVLLQLASLPLSANGKLDRKALPLPDLTPRVKGRAP
                     QSATEIAVAAAFSRLLGCEINDVESDFFALGGHSLLAMKLAAQLSQTFNRQVTPGQVM
                     VASDVAQLSKLLDTDDDERSRNLGFGPLLPLRESDGPTLFCFHPASGFAWQFSVLSRY
                     LSPSWSIMGIQSPRPVGPMQIATTLDEVCEHHLATLLARQPHGPYYLLGYSLGGTLAQ
                     GIAARLRARGETVAFLGLLDTWPPETQNWRGKEANGLNPDVLAEIERERAAFVAAQQG
                     NASDALFTAIEGNYADAVRLLTTAHSAPFDGHATLFVADKTVPEDVSPEQSWSPWIAS
                     LAIYRQPCAHVDIISPSAFETIGPIISELINK"
     gene            complement(3900..4118)
                     /locus_tag="OQP62_001992"
     CDS             complement(3900..4118)
                     /locus_tag="OQP62_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbtH family protein"
                     /protein_id="HCS1721555.1"
                     /translation="MEFSNPFDNPQGQFYILQNAQRQFSLWPAACALPAGWGVVCEPQ
                     SQDACQQWLNTRWTTLNPAHYADKQEAK"
     gene            complement(4149..5363)
                     /gene="fes"
                     /locus_tag="OQP62_001993"
     CDS             complement(4149..5363)
                     /gene="fes"
                     /locus_tag="OQP62_001993"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin esterase"
                     /protein_id="HCS1721556.1"
                     /translation="MKEALATGSEAWWRTKTGPEWIREKDGNYRVTFWWRDPQGNETH
                     SPIRRVWVYITGVTDHHQNAQPQTMARIAGTDVWRWSTALSANWRGSYCFIPTERDDV
                     FAAFAPGETPDRNALREGWRQLLPQAIADPLNSQSWRGGRGHAVSALEMPDAPRQPGW
                     DRPETSYSPPLMMQWHSERLGNSRRVWILTTGDEATEERPLAILLDGQFWAENMPVWP
                     ALASLTHQRLLPGAVYLLIDAIDTQHRNQELPCNADFWLAVQQELLPQVRAVTPFSDD
                     AGRTVVAGQSFGGLSALYAGLNWPTRFGCVLSQSGSFWWPHRITPPEGEVITRLKTGA
                     LCARGLRIVLEAGVREPIVFQANQALYAQLNTSQQSIFWRQVDGGHDALCWRGGLTQG
                     LMLLWQPLIDTL"
     gene            5552..7807
                     /locus_tag="OQP62_001994"
     CDS             5552..7807
                     /locus_tag="OQP62_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HCS1721557.1"
                     /translation="MNKKIHSLTLLVNLGIYGAALPVMAEEKTDSAALTNEDTIVVTA
                     AQQNLQAPGVSTITADEIRKNPPARDVSEIIRTMPGVNLTGNSTSGQRGNNRQIDIRG
                     MGPENTLILIDGKPVTSRNSVRLGWRGERDTRGDTAWVPPEMIERIEVLRGPAAARYG
                     NGAAGGVVNIITKKGGSEWHGSWNTYFNAPEHKDEGATKRTNFSLNGPLGGDFSFRLY
                     GNLDKTQADARNINQGHQSERTGSYADTLPAGREGVINKDINGVVRWDFAPLQSLELE
                     AGYSRQGNLYAGDTQNTNTNQLVKDNYGKETNRLYRQNYSLTWNGGWDNGVTTSNWVQ
                     YEHTRNSRMPEGLAGGTEGIFDPKASQKYADADLNDVTLHSEVSLPFDLLVNQNLTLG
                     TEWAQQRMKDQLSNSQTFMGGNIPGYSSTNRSPYSKAEIFSLFAENNMELTDSTMLTP
                     GIRFDHHSIVGDNWSPSLNLSQGLGDDFTLKMGIARAYKAPSLYQTNPNYILYSKGQG
                     CYATGAGTGIGCYMMGNDDLKAETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGT
                     VPLQRINNGKTDVYQWENVPKAVVEGLEGTLNVPVSDTVNWTNNVTYMLQSKNKETGE
                     RLSIIPQYTLNSTLSWQVRQDVSLQSTFTWYGKQEPKKYDYQGNPVTGTDKQAVSPYS
                     IVGLSATWDVTKNVSLTGGVDNLFDKRLWREGNAQTVRDTQTGAYMAGAGAYTYNEPG
                     RTWYMSINTHF"
     gene            7854..8558
                     /gene="entD"
                     /locus_tag="OQP62_001995"
     CDS             7854..8558
                     /gene="entD"
                     /locus_tag="OQP62_001995"
                     /EC_number="6.3.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin synthase subunit EntD"
                     /protein_id="HCS1721558.1"
                     /translation="MLTSHFPLPFAGHRLHIVDFDASSFHEHDLLWLPHHDRLRSAGR
                     KRKAEHLAGRIAAVHALREVGVRAVPGIGDKRQPLWPDGLFGSISHCASTALAVISRQ
                     RVGVDIEKIMSQHTATELAPSIIDSDERQILQASSLPFPLALTLAFSAKESVYKAFSD
                     RVTLPGFDSAKITSLNATHISLHLLPAFAAMMAERTVRTEWFQRGNSVITLVSAITRF
                     PHDRSAPASILSAIPR"
     gene            8570..9688
                     /locus_tag="OQP62_001996"
     CDS             8570..9688
                     /locus_tag="OQP62_001996"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HCS1721559.1"
                     /translation="MALNDFHVSEPYTLGIELEMQVINPPGYDLSQDSSTLIDAVKPQ
                     LTAGEIKHDITESMLEMATGVCRDIDQVAAQLSAMQHVILQAASEHHLGICGGGTHPF
                     QKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVGCANGDDAIYLLHGLSHFVPH
                     FIALSAASPYMQGSDTRFACARLNIFSAFPDNGPMPWVSNWQEFAGLFRRLSYTTMID
                     SIKDLHWDIRPSPAFGTVEVRVMDTPLTLDHAINMAGLIQATAHWLLTERPFKPQEQD
                     YLLYKFNRFQACRYGLEGVLTDVYTGDRRRLADDTLRLLDNVTPSARKLGADSAIDAL
                     RLQVKKGGNEAQYMREFIADGGSLIGLVQKHCEIWAGQ"
     gene            9755..10003
                     /locus_tag="OQP62_001997"
     CDS             9755..10003
                     /locus_tag="OQP62_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1158 family protein"
                     /protein_id="HCS1721560.1"
                     /translation="MKHPLESLMTAAGILLMALLSSLLLPAPSLGLALAQKLVGIFHL
                     MDLNQLYTLLFCLWFLLLGTLEYYVIRFIWRRWFSLAD"
     gene            complement(10009..10350)
                     /locus_tag="OQP62_001998"
     CDS             complement(10009..10350)
                     /locus_tag="OQP62_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RamA family antibiotic efflux transcriptional
                     regulator"
                     /protein_id="HCS1721561.1"
                     /translation="MTISAQVIDTIVEWIDDNLNQPLRIDDIARHAGYSKWHLQRLFM
                     QYKGESLRRYVRERKLKLAARDLRDTDQKVYDICLKYGFDSQQTFTRIFTRTFNLPPG
                     AYRKEKHGRTH"
     gene            10639..11220
                     /locus_tag="OQP62_001999"
     CDS             10639..11220
                     /locus_tag="OQP62_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HCS1721562.1"
                     /translation="MARPKSEDKKQALLEAATQAIAQSGIAASTAVIARNAGIAEGTL
                     FRYFATKDELINTLYLHLKQNLCQSMIMELDRSITDAKTMTRFIWNSYISWGLNHPAR
                     HRAIRQLAVSEKITKETEQRADDMFPELRDLCHRSVLMVFMSDEYRAFGDGLFLALAE
                     TTMDFAARDPARAGEYIALGFEAMWRALTREEQ"
     gene            11220..11588
                     /locus_tag="OQP62_002000"
     CDS             11220..11588
                     /locus_tag="OQP62_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HCS1721563.1"
                     /translation="MDGQTLHACAKRFALELPFTEHCWPFGPQYDVFKVGGKIFMLFT
                     EHHCRPVVNLKSAPQKSLVNQQIYPSIAPGYHMNKKHWISVYAGEDITVSLLNDLIND
                     SWNLVVDGLPKREQLRLRPR"
     gene            11685..12338
                     /gene="nfsB"
                     /locus_tag="OQP62_002001"
     CDS             11685..12338
                     /gene="nfsB"
                     /locus_tag="OQP62_002001"
                     /EC_number="1.5.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NAD(P)H nitroreductase"
                     /protein_id="HCS1721564.1"
                     /translation="MDIVSVALKRYSTKAFDPSKKLTAEEADKVKTLLQYSPSSTNSQ
                     PWHFIVASTEEGKARVAKSAAGNYTFNERKMLDASHVVVFCAKTAMDDAWLQRVVDQE
                     DADGRFATPEAKAANDKGRRFFADMHRVSLKDDHQWMAKQVYLNVGNFLLGVAAMGLD
                     AVPIEGFDAEVLDAEFGLKEKGYTSLVVVPVGHHSIEDFNAGLPKSRLPLETTLTEV"
     gene            12538..12663
                     /locus_tag="OQP62_002002"
                     /pseudo
     CDS             12538..12663
                     /locus_tag="OQP62_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459569.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
     gene            complement(12693..14663)
                     /locus_tag="OQP62_002003"
     CDS             complement(12693..14663)
                     /locus_tag="OQP62_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HCS1721565.1"
                     /translation="MTQKRTLLKYGILSLALAAPLSACAFDSLTVIGDSLSDTGNNGR
                     WTWDSGQNKLYDEQLAERYGLALSPSSNGGSNYAAGGAMTAPELNPQDNTADQVRQWL
                     ANTGGKADHNGLYIHWVGGNDLAAAIARPAMAQQIAGNSATSAAAQVGLLLDAGAGLV
                     VVPNVPDISATPELLEAVITAGLGAAAPPALKAALEALAEGATPDFASRQQAIRKALL
                     AAAATVSSNPFIQQLLVEQLLAGYEKVAEQASALTDYYNQMEEKGLEQHGGNIARADI
                     NGLFKEILANPQAFGLTNTVGMACPPGVSASVCSSAMPGFNASQDYLFADHLHPGPQV
                     HTIIAQYIQSIIAAPVQATYLNQSVQSMAQGSRTTLDSRYQQLRQGENPVGSLGMFGG
                     YSGGYQRYDNNEADGNGNHNNLTVGVDYQLNEQVLLGGLIAGSLDKQHPDDNYRYDAR
                     GFQAAVFSHLRAGQAWLDGDLHYLSAKFSNIQRSITLGALRRVEEGETNGRLWGARLT
                     SGYDFVMMPWLTTGPMLQYAWDYSHVNGYSEKLNTSTSMRFGDQNAHSQMGSVGWRLD
                     LRHSIIHSWAQINYRRQFGDDTYVANGGLKSTALTFSRAGKAQDKNWVDIAIGADFPL
                     SATVSAFAGLAQTAGLSDGNQTRYNVGFSARF"
     gene            14974..16221
                     /locus_tag="OQP62_002004"
     CDS             14974..16221
                     /locus_tag="OQP62_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HCS1721566.1"
                     /translation="MQELISQVEDLAGIEMNHTTSLVVIFGIIFLTAVVVHIILHWIV
                     LRAFEKRASASSRLWLQIITQNKLFHRLAFTLQSIIVNIQAALWLQKGSEAADILTTC
                     AQLWIMTYALLSLFSLLDVIFNLSQKWPAASQLPLKGIFQGIKLIGAIIVGILMISLL
                     IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGA
                     VIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSINIDATSIHF
                     LDDDEKQRLLTAQLLKPYLTSRHQEIDEWNKQLDAPESALNHRRMTNIGTFRAYLNEY
                     LRHHPRIRKDMTLMVRQLAPDDHGLPIEIYAFTNTVVWLEYESIQADIFDHIFAVVEE
                     FGLRIHQTPTGSDIRALSGTLRH"
     gene            complement(16263..17657)
                     /gene="pheP"
                     /locus_tag="OQP62_002005"
     CDS             complement(16263..17657)
                     /gene="pheP"
                     /locus_tag="OQP62_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine transporter"
                     /protein_id="HCS1721567.1"
                     /translation="MKNASTASGASVSDAASKNEPTLQRGLQNRHIQLIALGGAIGTG
                     LFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAWKYWGPF
                     AGFLSGWNYWVMFVLVGMAELTAAGIYMQYWLPDVPTWVWAAVFFIIINAVNLVNVRL
                     YGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEHASIDNLWRYNGFFATGWHGLLLS
                     LAVIMFSFGGLELIGITAAEARDPQKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVE
                     VKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPK
                     FLTRVSHRGVPVNSLMLSGAITSLVVLINYLLPQKAFSLLMALVVATLLLNWIMICLA
                     HLRFRAAMRRKGRETQFKALFYPAGNYLCIAFLALILVLMCTMDDMRLSAILLPVWIV
                     FLFIAFTVLRRKAH"
BASE COUNT         4244 a         5093 c         4610 g         3874 t
ORIGIN      
        1 aggcagaaac aacgcccgtt atttattaat aagttcgctg atgatgggcc cgatagtttc
       61 aaaagcggag ggagaaataa tatctacatg cgcgcacggc tggcgataaa tagccaaaga
      121 cgctatccac ggcgaccagc tctgttcagg cgatacgtct tccggcaccg ttttatccgc
      181 cacaaagagc gtggcatgtc catcaaacgg tgcgctatgc gccgtcgtca gcaaacggac
      241 ggcatccgca taattgcctt caatggcggt aaataaggcg tcggaggcat ttccctgctg
      301 cgcggcgaca aacgctgcgc gttcgcgttc aatttccgcc aatacgtccg gattgaggcc
      361 attcgcctct tttccccgcc agttttgtgt ttccggcggc caggtgtcca gtaaccccaa
      421 aaacgccacc gtttcaccgc gcgcgcgcaa ccgggcggcg atcccttgcg ccagcgtccc
      481 gcccagcgaa tagcctaata aataataagg gccatgcggc tgccgggcga gcaatgtcgc
      541 cagatgatgt tcacatacct catcaagggt ggttgcgatt tgcatagggc caacggggcg
      601 cggcgactga atccccataa tcgaccacga cgggctgaga tagcgtgata atacgctaaa
      661 ttgccaggcg aaccccgacg ccggatggaa acaaaataac gttggaccat cgctttcacg
      721 cagcggcaac agcggcccga accccagatt gcgcgagcgt tcgtcatcgt cagtatcgag
      781 cagcttactc aactgcgcca cgtcagacgc caccatcacc tgccccggcg tcacctggcg
      841 gttaaacgtc tggcttagct gcgcggccag tttcatcgcc agcagcgagt gtccgcccag
      901 cgcaaagaaa tcactttcaa cgtcgttaat ctcacagccc agcaggcggg aaaacgccgc
      961 ggcgacagca atctccgttg cggactgcgg cgcacgccct ttcacgcgcg gcgtcagatc
     1021 cggcagcggc agggctttgc gatccagctt gccattagcg ctaagcggca agctggcaag
     1081 ttgcaacagc acaaccggca ccatatgcgc gggaagtttt tggcgtaatt tatcctgcag
     1141 cgccggtaaa tccagcggta aaccggagtg cgacaccaga tagccgacca gttgccgggc
     1201 atccccgccc gtcgccgccg cctgattaaa gacgcaggca tgtgctaccg cctgttcaac
     1261 atccggcagc gtttgcatga cgcggtcaat ctcacccagt tcaatacgtt gcccccgaat
     1321 tttgagctga tcgtcgctgc gtcccaggta ctccaccacg ccggaatcca gccagcgcgc
     1381 cacatctccg gtacggtaca tccgttcacc tggcgcaaaa ggatcggcga taaaacggct
     1441 ggcggtaaga tccggacgcc ccagatagcc ctgcgccagt tggataccgg taagatagag
     1501 atcgccagcc acgcccggcg gcaccggctg catatgcgca tcgagaatac gtaaaccggt
     1561 attccagacg ggataaccaa tcgggatact gttgccgtca acagccgcca gctcatcgcc
     1621 acaggccgga taccagctca catccaccgc ggcctccgtt ggcccgtaca gattgtgtag
     1681 cggcgcgttg gttaacgtct cccattcgcg gcacagcgcc gtcggcaggg cctcgccgct
     1741 acagaaaacg cgctttaagg aagcgcagct tttcccagcc gacgctggcg tgagcgaggc
     1801 aataaaggcc gccagcatcg acggcacaaa atgggtggtc gtgacgccgt attgcgcaaa
     1861 gaaccgctgc atcgcgagcg gatcgcggtg cgcttccggt tcagccatca ccagtttcgc
     1921 cccggcgata aacggccaga aaaactccca tactgagacg tcaaaactgc acggtgtttt
     1981 ttgcgctact acatcatccg ccgtcaacgg atagtgatcc tgcatccaca gcagccggtt
     2041 gactatcgcc gtttgtccca ccatcacccc tttcggcctg cccgtcgaac cagaggtgaa
     2101 aatgatgtaa gcggtatgat gcggtagcga cagccccagc ggagtggcgt cactgaccgg
     2161 tagcggttgg ctataacaca aatattccat ccccggaata tcgtgaaagc gcgccagctg
     2221 cgcctgagtc gtaattaaca gtttcggctg cgcatcttcc agcatcattc gcagccgatc
     2281 gtcaggataa ccggtatcca gcggcagcca ggcggcgccc gcttcgacaa tgccgtgcag
     2341 cgctaaggtc agaaaaaccg accgcggcaa cgccaccgcc acgctatcgc caggctgaac
     2401 gccgcgttcc cgcagcgcgt atgccagcgc cacaacctgt tcgcgcattt cacggtaggt
     2461 aaagtgataa tgcgcatctg ccaacgcgga agcctctggc gttttttgcg cctgctgcgc
     2521 caccaaatcg ctaagcgtgg cggcgggaat cgttaccgcc gtattattaa ggtgtgttaa
     2581 ttgcgtttgt tcttccgcca gcagcatttg cgcatcgccg cagcgcagcg ccgggttatc
     2641 agcaaactgc gtgataagcg ccatcaaccg taaggcatgg cgggaaagcg tggcgtcatc
     2701 gtaacgctgc gcattcgcca gcaattcaat atccagaccg ccgttttcat ccggaaaaag
     2761 cgccagttca agatcgttaa ccggccccgt cgccagggta tgggtttgcg cctgtatgcc
     2821 aggaaaatcc agatgataat caaatacttt tatgttgagc accgggccaa atagcggcgt
     2881 ttcccctgcg gctcgcccgc tatcgcgtac aatctgttcg gcgtcgtaac gctggtggcg
     2941 gcgcatcttc tttaactgcg ccgcaagacg cttcgccagc gttggcagat cttccgtcgc
     3001 atgaaggtta accgccagcg gcaacacgtt aaggacaggc ccggtcgccg ttaacgccgc
     3061 tgagcccatc cgccgcataa agataaatcc ggcggcataa tccatacgcc cacataatcg
     3121 tcccagccac aacgtcacca gcgccagggc aagatccgct cgcggtatct caggcatgtg
     3181 cgccgccagt tggcgaaacg cccccgccgg cgcgctcaat ttcatacgca gaatatccgc
     3241 gctcgccgac cgccccggca acggcgcggc agacattgac gccggcggcg gcagctcgcg
     3301 gcgctgctgc gcccagaagg cgccgtcacg ctgccaggcc tcgctctggc gatagcgctg
     3361 atattcctca accacatcca caaagggggt aaaaggcgac tccggcgtag gggcgtcgct
     3421 ctgccaggcg cgataaatcg ccgcaatctg gcgagttatc gccgggaagc taaagccatc
     3481 caccagcaaa tggtgatagc gctgatacca ataccagcgg gtatcatcaa tgcggattaa
     3541 ctggtgaaac gccagcggct taccgctatc tgcgcgcagg ttttgccgta aatccgcctg
     3601 cattaacgcc agcgccgcga gatgcggatc gggctggtcg cgtaaatcgg caatcggggg
     3661 ttcgccgaag gtgtgctcag gatctatcca ttgccagacc tcgccgttct cttcggtaaa
     3721 acgcatccgt agcgtatccg cctgttgcat ccctaccgct accgcttttg ccagcaaggg
     3781 ggcatccagc tcgccattca gttccacata gtgcgccacg ctccaggcgg agggtaaatc
     3841 agagagtttt tccgccatcc agatccccgg ctgggcggcg actaacggta aacgctgcgt
     3901 catttcgcct cctgcttatc ggcataatgc gccggattca gtgttgtcca gcgcgtatta
     3961 agccactgct ggcacgcgtc ctgcgattgc ggttcgcata ccacgcccca tcctgcggga
     4021 agcgcgcacg ccgctggcca aaggctgaat tgacgctgcg cattttgcag gatgtaaaac
     4081 tgtccctgcg gattatcgaa gggattactg aattccatac tcaactcctg tcatggacat
     4141 gtgcccggtt aaagcgtgtc gataagcggc tgccaaagca gcatcagccc ttgcgttagc
     4201 ccgccgcgcc agcaaagcgc atcgtgtccg ccgtcaacct gacgccagaa aatggactgc
     4261 tgcgaggtat tcagttgggc ataaagcgcc tgatttgcct gaaacacgat cggctcacgc
     4321 acgccggctt ccagtacgat acgcagtccg cgcgcgcaca atgcgccggt tttcagccgg
     4381 gtaatgactt ccccctccgg cggggtgatg cgatggggcc accagaacga tcctgactgg
     4441 cttagtacac agccaaaacg cgtcggccag ttcaggccgg catacagcgc cgacaggcca
     4501 ccaaagctct gtccggcgac caccgttcgt ccggcatcat cgctaaaagg cgtcacggct
     4561 ctgacttgcg gcaacagttc ctgctgcacc gccagccaga agtcggcatt gcagggcaac
     4621 tcctggttgc ggtgttgagt atcaatcgcg tcaatcagca gatagacggc accgggaagc
     4681 aggcgttgat gagtcagcga ggcgagcgcg ggccagacgg gcatattttc cgcccagaat
     4741 tgaccgtcca gcagaatagc caacggtctt tcctccgtcg cctcgtctcc ggtcgtcaat
     4801 atccatacgc ggcgggagtt acccagacgt tcgctatgcc actgcatcat caaaggcggt
     4861 gagtacgacg tttcaggacg atcccatccc ggctgacggg gcgcatccgg catttccagc
     4921 gctgaaaccg catgaccacg tcctccccgc cagctttgcg aattaagcgg gtcggcaatc
     4981 gcctgcggta atagctgtcg ccagccttca cgcagcgcgt tccgatcggg cgtttcgccc
     5041 ggcgcaaaag cggcaaaaac gtcatctcgc tcggtaggaa taaaacagta gctgccgcgc
     5101 cagttagcgc taagcgccgt gctccagcgc cagacatccg ttccggcaat acgcgccatc
     5161 gtctgaggct gcgcgttttg atgatgatcg gttacgccag tgatgtagac ccagacacgc
     5221 cgtatcgggg agtgtgtttc gtttccctgc gggtcgcgcc accaaaaagt gacccgataa
     5281 tttccgtctt tttcccgtat ccattccggc ccggttttcg tcctccacca ggcctcactt
     5341 cccgttgcca gcgcctcttt cattataacc ctgtgtttat tatgaatttt gtatataaaa
     5401 ggtgaaatat attgataata ttattgataa ctatttgcat ttgcaatagc gtattgtagc
     5461 gctatgggac gcgcgaacac aatttcacca cccggccaat gcctttgacg ggcgctttgg
     5521 cttatgtggc taaagaaaag caggatatac aatgaacaag aagattcatt ccctgacctt
     5581 actggtcaat ttagggattt acggggccgc tctgcccgtg atggcggaag aaaaaaccga
     5641 tagcgctgcg ctcaccaatg aagacaccat cgtggtgacc gctgcccagc aaaacctaca
     5701 ggcgccaggc gtatccacca tcaccgccga tgagatccgc aaaaatccgc ccgcgcgcga
     5761 cgtgtcagaa atcatccgca ccatgccggg cgtaaacctg accggcaact ccaccagcgg
     5821 tcagcgcggg aataaccgcc aaatcgatat tcgcggcatg gggccggaaa acacccttat
     5881 cctgatagac ggtaaacccg ttaccagccg taactcggta cgcctgggct ggcgcggcga
     5941 acgcgatacc cgcggcgata ccgcgtgggt gccgccagag atgatcgaac gcattgaagt
     6001 gctgcgtggc cctgccgccg cacgttacgg taacggcgcg gcgggtggcg tggtcaatat
     6061 cattaccaaa aaaggcggta gcgagtggca cggttcctgg aatacctatt tcaacgcgcc
     6121 ggaacataaa gacgaaggcg cgaccaaacg cactaacttt agcctgaacg gcccgctggg
     6181 cggggatttc agcttccgtc tgtatggcaa cctcgacaaa acgcaggcgg atgcgcgtaa
     6241 tattaaccag gggcatcagt ctgaacgtac cgggagttac gccgacacgt taccagccgg
     6301 acgcgagggg gtcattaaca aagatatcaa cggcgtggtt cgttgggatt ttgctccgct
     6361 tcagtctctg gagctggagg ccggttacag tcgccagggc aacctctatg ccggcgatac
     6421 tcagaacacc aatacgaacc aactggtgaa agataattac ggaaaagaga cgaaccgcct
     6481 ctatcggcag aactactctc tgacctggaa cggcggctgg gataatggcg taaccaccag
     6541 taactgggtg caatacgaac atacccgtaa ctcccggatg ccggaaggcc tggcaggcgg
     6601 caccgaaggg attttcgatc ccaaagcatc gcaaaaatat gccgatgccg atttgaatga
     6661 cgtcacccta cacagcgaag tgagccttcc tttcgatctg ctggtcaatc aaaacctgac
     6721 gctgggtacc gaatgggccc aacagcgtat gaaagaccag ctctccaact cgcaaacctt
     6781 tatgggggga aatatcccgg gttacagcag taccaatcgt agcccctatt caaaagcgga
     6841 aattttctct ctgtttgctg aaaacaacat ggaactgacc gacagcacca tgctgacgcc
     6901 ggggatacgt ttcgatcatc acagtattgt gggggataac tggagcccgt cgctgaacct
     6961 gtcgcaaggt ctgggggatg actttaccct gaaaatgggg atcgcccgcg cttataaagc
     7021 cccgagtctg taccagacta acccaaacta tattttgtac agtaaaggtc agggttgcta
     7081 cgcgactggc gcgggtaccg gcatcggctg ctatatgatg ggtaacgatg atctgaaagc
     7141 cgaaaccagc atcaataaag agatcggtct ggaatttaaa cgcgatggct ggctggccgg
     7201 cgtcacctgg ttccgcaatg attaccgcaa taagattgaa gcgggtacgg tgccgttgca
     7261 gcgtatcaat aacggcaaaa cggatgtcta tcagtgggag aacgtgccga aagcggtcgt
     7321 tgaaggtctg gaaggcacgt taaacgtacc ggttagcgac accgtcaact ggacgaataa
     7381 cgttacgtat atgctgcaga gtaaaaacaa agagaccggc gaacgcctgt cgattattcc
     7441 acagtacacg cttaactcta ccctgagctg gcaggtacgt caggacgttt ctctgcaatc
     7501 gaccttcacc tggtacggca aacaagagcc gaagaaatat gattatcagg gtaaccccgt
     7561 taccggaaca gataagcaag cggtcagccc atacagtatt gttggcctga gcgcgacctg
     7621 ggacgtgacc aaaaatgtca gcctgaccgg tggcgtggat aacctctttg acaaacgtct
     7681 gtggcgtgaa ggtaacgcgc aaaccgtcag ggatacgcaa actggcgctt atatggcggg
     7741 cgctggcgcg tacacctata acgaaccggg acgtacgtgg tatatgagca ttaataccca
     7801 tttctgatgg caaccttccc tccctcattc ggggagggaa ttagcaaaag acgatgctga
     7861 catctcattt tccccttccc tttgccggac acaggctgca tatcgtcgac tttgatgcga
     7921 gcagctttca cgaacacgac ctgctatggc tgcctcatca cgatcggctc cggtctgccg
     7981 gacgcaagcg taaagctgaa catctggcag gccgcatcgc tgccgttcat gcgctacgcg
     8041 aggtgggcgt cagggcggtg cccggtattg gcgacaagcg acagccgcta tggccggacg
     8101 gcctatttgg cagcatcagc cactgtgcgt caacggcgct ggccgtcata tcccgacagc
     8161 gtgtcggcgt tgatatagaa aaaatcatga gtcagcacac ggcgacagag ctggcgccgt
     8221 ccattattga tagcgatgag cgccaaattc tccaggcgag ctcgctccct tttccgcttg
     8281 ccctgacgct ggctttctcc gccaaagaga gcgtttataa agccttttca gaccgcgtca
     8341 cgctcccggg attcgatagc gcaaaaatta cctcgcttaa cgccacgcac atctcgttac
     8401 atctgctgcc agcctttgcc gccatgatgg ctgaacgtac cgtccgtaca gaatggtttc
     8461 aacgtggcaa tagcgttatt actctagttt ctgcaataac gcgctttccc cacgacagga
     8521 gcgctcccgc ttctatactt agcgcaatac cccgataaat gagatcgcta tggcgctgaa
     8581 tgattttcac gtttctgaac cttatacgct cggtattgag ctggagatgc aggtgatcaa
     8641 tccacctggc tacgatttaa gtcaggactc ttctacgctg atcgacgccg ttaagcccca
     8701 acttactgcg ggagaaatta agcacgatat caccgaaagt atgctggaga tggccacggg
     8761 cgtctgccgc gatattgacc aggtggcggc ccaactttct gccatgcagc acgttatttt
     8821 acaggcggcg tcggaacacc atctcggcat ttgcggcggc ggtacgcacc cttttcaaaa
     8881 atggcagcgt caggaggtct gtgataatga gcgctatcaa cgcacgctgg aaaatttcgg
     8941 ctacttaatt caacaggcga cggttttcgg tcagcatgtc cacgtcggct gcgcgaacgg
     9001 cgacgatgcg atttatcttt tacacgggct gtcgcatttt gtgccgcact ttattgcgct
     9061 ctccgccgcg tctccctata tgcaaggatc tgacacccgt tttgcctgcg cgcgcctgaa
     9121 tattttttcc gcttttcccg ataacgggcc catgccgtgg gtcagtaact ggcaagagtt
     9181 tgccggacta tttcgtcgtc tgtcttacac cacgatgatc gacagcatca aagatttgca
     9241 ctgggatatc cgccccagcc cggcctttgg cacggttgag gttcgggtga tggatacgcc
     9301 gctcactctt gatcatgcca tcaatatggc aggattgatt caggcgaccg cgcactggct
     9361 gctgaccgag cgtcccttta aaccgcagga acaagactat ctgttatata aattcaaccg
     9421 ttttcaggct tgccgctatg gtctggaggg cgtgctaacc gatgtctata ccggcgaccg
     9481 ccgtcgcctg gcagatgata cgctgcgtct gctggacaac gttaccccct ctgcgcgtaa
     9541 gctgggcgcc gacagcgcca ttgacgcgct acgtttgcag gtgaaaaaag gcggtaacga
     9601 agcgcaatat atgcgggagt ttattgccga cggcggatcg ctgataggcc tggtacaaaa
     9661 acattgtgaa atctgggcgg gacaatagac agcatatttg ccttaccagg cgatgtcccg
     9721 gacaatggcg ttttaactta cgtttaacaa agccatgaaa cacccgcttg aatcattgat
     9781 gaccgctgcc ggtattttgc tgatggcgtt gctctccagc ctgctgctgc ccgccccttc
     9841 gctcggcctt gcgctggcgc aaaaactggt cgggatcttt catcttatgg atctcaacca
     9901 gctttatact ttgttgtttt gtttatggtt tctgttgctc ggcacgctgg aatattatgt
     9961 tattcgcttt atctggcggc gctggttttc gctggccgat taaacatttc aatgcgtacg
    10021 gccatgcttt tctttacgat aagcgcctgg cggcaggttg aacgtgcggg taaaaatgcg
    10081 cgtaaaggtt tgctgcgaat caaaaccata cttgagacaa atatcataca ccttctggtc
    10141 ggtgtcgcgc aggtcgcgcg ccgccagttt tagcttccgt tcacgcacgt agcgcctcag
    10201 actctcccct ttgtactgca taaaaaggcg ctgcaggtgc cacttggaat accccgcatg
    10261 acgggcaata tcatcaatac gtaacggctg attcaaatta tcatcaatcc actcgacaat
    10321 cgtgtcgata acctgagcgg aaatggtcat cgtgctctcc cctctatcaa actcgtcagc
    10381 ggctcccgca ccgcacattt acggcaacag caataagcat agtaataacc acacaaattg
    10441 tgagacggct tatcgcatgg cctgcaatat gcttttctac cacttcatgc ggcagccctt
    10501 gattatgagt gagtaagcac tcattataga aagcaaagat acgccgtcaa ggtacttttc
    10561 aaaggttgac attcaccgtt gcgacgcgac aacgggcatg attcaatcat gtttttacag
    10621 acataagggt aacgtgtagt ggctcgtccg aagagtgaag acaaaaaaca agcattactg
    10681 gaagcggcaa cccaggcgat agcgcaatcc ggtatcgccg cctcaacggc ggtgattgcg
    10741 cgtaacgcag gtattgcaga aggaacatta tttcgctatt tcgcgaccaa agatgagctg
    10801 attaacacgt tgtatttgca tttaaagcag aacctctgcc agtcaatgat aatggagctg
    10861 gatcgatcca ttaccgatgc caaaacgatg acccgcttta tctggaacag ttatatcagt
    10921 tggggtctga accatcccgc gcgccatcgg gcgatccgtc aactggccgt cagcgaaaag
    10981 atcaccaaag agacggaaca acgggccgac gatatgttcc ccgaattgcg cgatttatgt
    11041 catcgttccg ttttgatggt atttatgtcg gatgagtacc gcgccttcgg cgacggcctt
    11101 tttctggcgc tggctgaaac aacaatggat ttcgccgcgc gcgatcccgc tcgcgctggc
    11161 gaatatattg cgctgggatt cgaagccatg tggcgcgcgc tgactcgcga ggagcaataa
    11221 tggacggtca aacactgcac gcctgtgcaa aacgctttgc gctggaactg ccttttaccg
    11281 aacactgctg gcctttcggc ccacagtacg atgtgtttaa agtcggcggc aaaatattca
    11341 tgctgttcac tgaacatcac tgtcgcccag tggtgaacct gaagtcggcc ccccaaaaat
    11401 ccctggtgaa tcaacaaatt taccccagca ttgcgcctgg ctatcacatg aataagaaac
    11461 actggatttc agtctatgcg ggcgaggata tcaccgtctc gctactcaac gatttgataa
    11521 atgactcatg gaatctggtc gtagacgggc tgcctaaaag agagcaactg cgcctgcgac
    11581 cgcgctgatg caataaccgt ttccgcattt tcctccctta tctttttacc gataacccgg
    11641 taccctgctg atacaaaagg gtactaaacc aaccaggagc atttatggat atcgtttctg
    11701 tcgccttaaa gcgctactcc actaaggcgt tcgatcccag caaaaaactg accgccgaag
    11761 aagcggataa agtaaaaaca ctactacagt acagcccctc cagcaccaat tcccagccgt
    11821 ggcactttat tgtcgccagt acggaagaag gcaaagcgcg tgtcgcaaaa tccgctgccg
    11881 gaaactacac gttcaacgaa cgcaaaatgc tggacgcctc ccatgtggtg gtcttctgcg
    11941 ccaaaaccgc aatggatgac gcatggctgc aacgggtggt cgatcaggaa gatgctgatg
    12001 gccgtttcgc tacgccggaa gctaaagcgg caaatgataa aggtcgccgc tttttcgctg
    12061 atatgcaccg cgtctcgctg aaagatgacc accagtggat ggcgaagcag gtttatctga
    12121 acgtcggcaa ctttctgctg ggcgtcgccg cgatgggtct cgacgccgtc cccattgaag
    12181 gtttcgacgc cgaggtgctc gacgctgaat ttggtctgaa agaaaaaggc tataccagtc
    12241 tggtcgtggt gccagtcggc catcatagca tcgaggattt caacgccggg ctgccaaaat
    12301 cacgtctgcc gcttgaaacc acactgacgg aagtctaatc ccctgcctaa gccggacgcc
    12361 cgtccggctt ttttcacctt tctgccaggt tccccaatga tcaatggcgc gaagtgccag
    12421 gttttacatc gttagtgtta acttcctctt tcaacctatt gaaaataaat gatatttaaa
    12481 actggcacgc cgtttgccat atctggatac cccctatctg gatgaaggag aaaacgggtg
    12541 agacatgttt atgtagccag ccatggccct tttgcccgcg gacttattaa cagtctatcg
    12601 ctgctgattg gcgacgaaca cggcgtgaca ccggtttgcg cctacgatgg cgatattgtg
    12661 tcaccacggg gttggccctc cctggcgtgt catcaaaatc gggcgctaaa cccaacgtta
    12721 taacgggttt gattgccatc gcttaaccct gccgtttgcg ccagcccggc gaaagcggac
    12781 actgttgccg acagcggaaa atctgcgcca atcgcgatat caacccagtt tttatcctgc
    12841 gctttcccgg cacggctaaa cgtcagcgcg gtcgatttaa ggccgccgtt cgccacatac
    12901 gtatcatcgc caaactgacg gcgataatta atctgcgccc aggaatgaat gatactgtgg
    12961 cgaagatcca gacgccaacc cacgctgccc atctgcgaat gggcgttttg gtcgccaaaa
    13021 cgcattgatg tactggtatt gagcttctcg ctataaccat taacgtggct gtaatcccat
    13081 gcatattgca gcatcggccc ggtcgttaac cacggcatca tgacaaaatc ataaccgctg
    13141 gttaacctcg cgccccacag ccgaccgttg gtttcgccct cttccacccg tcttagcgca
    13201 ccgagcgtga tactgcgctg aatgttactg aatttagcgg acaggtagtg taaatcgcca
    13261 tccagccacg cctgaccggc gcgtaaatgg ctgaatacgg cggcctgaaa accgcgggcg
    13321 tcataacgat aattatcgtc aggatgttgc ttatccagag aaccggctat cagccctccc
    13381 agcagtacct gctcgttaag ctgataatcg acgccaaccg tcagattatt atgattaccg
    13441 ttcccgtcgg cctcattatt atcataacgt tgatatcccc cgctgtatcc gccgaacatg
    13501 cccagtgaac caacaggatt ttccccctgg cgaagctgct gataacggct gtcaagcgtg
    13561 gtacgactgc cttgcgccat cgactgaacg ctttggttca gatatgtcgc ctgtaccggc
    13621 gcggcaatga tcgactgaat atattgcgca ataatggtat ggacctgcgg accgggatgt
    13681 aaatgatcgg caaacagata gtcctgcgac gcattaaatc caggcattgc cgaggagcac
    13741 accgaagcgg atacgcccgg cgggcaggcc atgcctacgg tatttgtcag accaaacgcc
    13801 tgcgggttgg caagaatttc cttaaagagg ccgttgatat cggcacgggc tatattgccg
    13861 ccgtgttgct ccagcccctt ctcttccatc tgattataat aatcggtcag agctgacgcc
    13921 tgctctgcca ccttttcata gcccgccagc agttgctcaa cgagcagttg ctgaataaac
    13981 ggattgctgc ttaccgttgc agccgccgcc agcaacgcct tgcggatcgc ctgttgccga
    14041 ctggcgaaat cgggcgtagc tccctccgcc agcgcctcta acgccgcttt tagcgccggg
    14101 ggcgccgctg cgcccagccc ggcggtgatt accgcctcca gaagctctgg cgtcgcacta
    14161 atatccggta cgtttggcac cacgaccagc ccggcgccgg catccagtaa cagccctacc
    14221 tgcgccgccg cgctagtggc gctattaccg gctatttgct gtgccatggc aggtcgcgcg
    14281 atggccgccg ccagatcgtt tccgccgacc cagtgaatat acaaaccgtt gtggtcggct
    14341 tttccccccg tattggcaag ccactgccgt acctgatccg cggtattatc ctgcgggttt
    14401 aattccgggg ccgtcatcgc gccgccagcg gcataattag aaccgccatt gctggaaggg
    14461 cttaatgcca gcccatatcg ttcggccaac tgttcgtcgt agagcttatt ttgaccacta
    14521 tcccaggtcc agcgaccgtt atttccggta tcgctaaggc tatcgccaat caccgtaaga
    14581 gagtcaaacg cacaggcaga taatggcgcg gccagcgcca gcgagagtat gccgtatttt
    14641 agcagggtac gcttttgggt catccgatgt tccttaatgt tattgttgat aggtacgacg
    14701 gttctaatca ttatccgaca gagatattgc aatcgtttta aacattctgg ttaaaaagtt
    14761 ttcattcatt gttgacggac tggcgcctgt tcaaaaagag ggaaccgcgt aaaataacga
    14821 cgtttatagg gcgctggata aaatatagcg tatggataac cccagaggcg cttttacccg
    14881 tctgttgctg attatgcctg aagcgcaggc gtcctgattt gcataaatgc cattcagcag
    14941 tcatcatagg ctgctgttta taaaggagag attatgcagg aattgatatc ccaggtagaa
    15001 gatttagcgg gaattgaaat gaatcacacc acgtcgctgg tggtgatatt tggtattatt
    15061 tttctgacag cagttgtcgt gcatattatt ttgcactgga tagtactgcg cgcttttgaa
    15121 aaacgtgcca gcgccagttc ccgcctgtgg ctgcaaatta ttacccagaa taaattattc
    15181 catcgtctgg cttttacgct acaaagcatc attgtcaata ttcaagccgc gctctggcta
    15241 caaaaaggca gtgaggctgc ggatatcctg acgacctgcg cgcagttatg gattatgacc
    15301 tacgccctgc tgtcgttatt ttcgctgctg gacgtgattt tcaatctatc gcaaaaatgg
    15361 cccgccgcct ctcagttacc gctaaaagga atatttcagg gcattaagct catcggcgca
    15421 attatcgtcg gcattctgat gatctcactg ctgattggcc agtcaccagc aattttaatc
    15481 agcgggctgg gcgcgatggc cgcggtatta atgctggtct ttaaagaccc gattcttggc
    15541 ctggttgctg gtatacagct ttccgccaac gatatgctca aactgggcga ctggctggag
    15601 atgccaaaat atggcgcaga tggcgcggtc attgatattg gcttaaccac ggtaaaagta
    15661 cgcaactggg ataataccat caccaccatt cccacctggt cgctggtttc cgactcgttc
    15721 aaaaactgga gcggcatgtc tgcgtccggc ggacgccgga ttaaacgcag cattaatatt
    15781 gacgcgacca gtatccattt tctggatgat gatgaaaaac agcggctgtt aaccgcgcaa
    15841 ctgttaaagc cgtaccttac cagccgtcat caggaaatcg atgaatggaa taaacaactg
    15901 gatgcgccgg aatcagcctt aaatcaccgc cgaatgacca atatcgggac atttcgcgcc
    15961 tatctgaacg aatatttacg ccaccatccg cgcatccgta aagacatgac gctgatggta
    16021 cgccaactgg cgcctgacga tcatggtttg ccgatagaga tctacgcctt taccaatacc
    16081 gtcgtgtggc tggaatatga gagcattcag gccgatattt tcgaccatat ttttgccgtg
    16141 gtggaagagt tcggcttgcg tattcatcag acgccgaccg gcagcgatat tcgcgcgctg
    16201 tcagggacat tgcgccatta atggattgcc cgatcgcatg agcatgggat cgggcaaaaa
    16261 agttaatgag ccttacggcg caaaacggta aacgcgataa acagaaatac aatccatacc
    16321 ggcagcaaaa tcgccgacaa tcgcatatcg tccatcgtac acattaacac cagaatcagc
    16381 gccagaaacg caatgcacaa atagtttccg gcgggataga acagcgcctt aaattgcgtc
    16441 tcgcgccctt tacgacgcat cgccgcgcga aaacgtaaat gcgcgagaca gatcattatc
    16501 cagtttagca atagcgtcgc gacaaccagc gccatcaaca ggctaaacgc tttttgcggc
    16561 aacagatagt tgatcagcac caccagcgag gtaatcgctc cggacagcat cagcgagttc
    16621 accggcacgc cgcgatggct gacgcgagtt aaaaatttcg gcgcgttgcc ttgtacggac
    16681 aggccgaaca gcattcggct attcgaataa acgccgctgt tatacaccga aagcgacgcg
    16741 accaggataa cgaaattcag cgccgaagcc accacattac tgtccaggtt atggaagatc
    16801 atcacaaaag ggctgctatt ggatttcacc tctacccatg gatagagcgc cagcaacacc
    16861 accagcgaac cgatgtagaa cagcaaaata cggtatacca cctgattcac cgctttcggg
    16921 atgctttttt gcggatcgcg cgcttccgcc gcagtaatgc cgatcagctc cagtccgcca
    16981 aaagaaaaca taatcaccgc cagcgacaga agcaaaccat gccaaccggt agcgaagaaa
    17041 ccgttataac gccagaggtt atcaatgctg gcatgttcgc cgccgtggcc ggagaacagc
    17101 agccacagac caaaacctat catgccgata atcgccagca ctttaatgag cgcgaaccag
    17161 aattccgttt cgccatacag acgaacgttc accagattca cggcattaat gataataaaa
    17221 aacaccgccg cccataccca tgttggtacg tcaggcagcc agtactgcat atagatgccc
    17281 gccgcggtca gctccgccat cccgaccagc acaaacatga cccaatagtt ccagcccgac
    17341 aaaaagcccg caaacggccc ccaatatttc caggcgaagt gggcaaacga tccggaaacc
    17401 ggctcttcca cgaccatttc acccaactgg cgcataatga gaaaagcgat aatcccggca
    17461 acgccatagc ccaacaaaac agccggcccc gccatttgaa tcgccgggcc gatgcccaga
    17521 aacagtccgg tgccaatggc gccgcccagg gcgattagct gaatatggcg gttttgcaac
    17581 ccccgttgaa gcgtcggttc attcttcgac gcggcatccg acacgctggc gccggatgca
    17641 gttgacgcgt ttttcacgtc ctacccctgt atcgttttta ttgaggggca ccttttaaca
    17701 tttcgctctc gctgccgcaa ggcgcaatcg tttgtcaagg ctcaactccg gacgttaacg
    17761 ttatcgtgta aaaaaagatg tcgcggggag taaaaagaaa agagtacgcg ccgatataga
    17821 a
//
LOCUS       DAJVSD010000072        17634 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.072, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000072 DAJVSD010000000
VERSION     DAJVSD010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 17634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17634
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.072"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            92..1318
                     /locus_tag="OQP62_002006"
     CDS             92..1318
                     /locus_tag="OQP62_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3748 domain-containing protein"
                     /protein_id="HCS1721568.1"
                     /translation="MKQITFTPRHHQLTNTNTWTPDSQWLVFDVRPSGASFTGKTIER
                     VNVHTGDVEVIYRAVQGAHVGVVTVHPADNYYVFIHGPENPDETWHYDFHHRRGVIAT
                     PGGVTNLDAMDITAPYTPGALRGGSHVHVFSPNGELVSFTYNDHVLHECDPALDLRNV
                     GVAAPYGPVTVPVQHPREYSGSHWCVLVSRTTPAPRPGSDDINRAYEEGWVGNRQIAF
                     IGDTLSLTGQKVPELFIVDLPCHENGWKQAGDTPLTGTESTMPSPPLGVVQRRLTFTH
                     QRVYPGLTNEPRHWVRSNPQATAIAFLMRDDNGVAQLWLISPQGGEPRQLTHHATGVQ
                     SAFNWHPSGKWLGLVLENRIACCDAQSGKIDFLTARHDNPPSADAVVFSPDGRHVAWM
                     EEVKGFRQLWVTETGR"
     gene            complement(1320..1652)
                     /locus_tag="OQP62_002007"
     CDS             complement(1320..1652)
                     /locus_tag="OQP62_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001675643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HCS1721569.1"
                     /translation="MIKNVWLTLIIWNGMLLLGGCSSVMSHTGGKEGTYPGTRASATM
                     IGNDETNWGTKSLAILDMPFTAVMDTILLPWDIFRKDSSVRSRVEKSEEETKMTNAVI
                     PPAKMPPP"
     misc_feature    1895..1968
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01832"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ROSE (Repression Of Heat Shock gene Expression)
                     occurs in the 5'-region of heat shock genes and acts as an
                     RNA thermometer to modulate expression; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF01832"
     gene            1962..2375
                     /gene="ibpA"
                     /locus_tag="OQP62_002008"
     CDS             1962..2375
                     /gene="ibpA"
                     /locus_tag="OQP62_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006687722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock chaperone IbpA"
                     /protein_id="HCS1721570.1"
                     /translation="MRNFDLSPLYRSAIGFDRLFNLLENNQSQSNGGYPPYNVELVDE
                     NHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLA
                     ENIHVRGANLVNGLLYIELERVIPEANKPRRIEIN"
     gene            2485..2913
                     /gene="ibpB"
                     /locus_tag="OQP62_002009"
     CDS             2485..2913
                     /gene="ibpB"
                     /locus_tag="OQP62_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462708.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock chaperone IbpB"
                     /protein_id="HCS1721571.1"
                     /translation="MRNYDLSPLLRQWIGFDKLANALQNSGESQSFPPYNIEKSDDNH
                     YRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPENEPKWLHQGLVMQPFSLSFTLAEN
                     MEVSGATFTNGLLYIDLTRNEPETIPPQRIAINERSALNS"
     gene            3107..4768
                     /locus_tag="OQP62_002010"
     CDS             3107..4768
                     /locus_tag="OQP62_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HCS1721572.1"
                     /translation="MSDIALTVSVLALVAVVGLWIGNIKVRGVGFGIGGVLFGGIIVG
                     HFVDQAGVTLSGDMLHFIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVI
                     MGGLVTAILHKIFAIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPVDLVDQMGMSY
                     AMAYPFGICGILLTMWLMRLIFRVNVEAEAQKHESSLANGHSLIQTMNIRVENPNLNN
                     MAIQDVPILNSDKIICSRLKRDDTLMVPSPGTIIQAGDLLHLVGQPTDLHNAQLVIGK
                     EVDTSLSTRGTDLRVERVVITNEKVLGKRIRDLHFKERYDVVISRLNRAGVELVASSD
                     ASLQFGDILNLVGRPASIDAVANVVGNAQQKLQQVQMLPVFIGIGLGVLLGSIPLFVP
                     GFPVALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKS
                     GGDFVDTLTQGEGLSWIGYGIFITAIPLITVGLLARIFAKMNYLTLCGMLAGSMTDPP
                     ALAFANNLHATSGAAALSYATVYPLVMFLRIITPQLLAVIFWGMG"
     gene            5211..5558
                     /locus_tag="OQP62_002011"
                     /pseudo
     CDS             5211..5558
                     /locus_tag="OQP62_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462706.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YidH family protein"
     gene            5548..5910
                     /locus_tag="OQP62_002012"
     CDS             5548..5910
                     /locus_tag="OQP62_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF202 domain-containing protein"
                     /protein_id="HCS1721573.1"
                     /translation="MPDSRKARRQNDPGLQPERTSLAWFRTLLGYGALMALAVRHYWH
                     QAGFLFWVSISVLAIVAVILWRYTLSRNLMDVAHSDFSETHVMRDKFLISLAVLSLAI
                     LFAVTHIRQLIAFIGDFI"
     gene            5907..6437
                     /locus_tag="OQP62_002013"
     CDS             5907..6437
                     /locus_tag="OQP62_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HCS1721574.1"
                     /translation="MTGRQDIVVSNDQIQVVVNRQNSQRPQQLYRNLQRLGIRNVHFI
                     PLLEHDRNGMLTEDSLCSADWGRFLNSVFDIWVREDIQRISVRLFDETLQQWCGGRNG
                     AKTPDKAPLSAECQKCSLLRFCGGGCPEHRDSQGKNQLCEGYQTFFNYSSPHMRVMRD
                     LLKQHRSPEELMAMLR"
     gene            complement(6519..7841)
                     /gene="dsdA"
                     /locus_tag="OQP62_002014"
     CDS             complement(6519..7841)
                     /gene="dsdA"
                     /locus_tag="OQP62_002014"
                     /EC_number="4.3.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-serine ammonia-lyase"
                     /protein_id="HCS1721575.1"
                     /translation="MENILKLIARYPLVEDLVALKETTWFNPGATSLAQGLPYVGLTE
                     QDVNAAHDRLARFAPYLAKAFPQTAAAGGIIESDVVAIPAMQKRLEKEYGQTIDGEML
                     LKKDSHLAISGSIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYS
                     IAVGSTGNLGLSIGIMSACIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEDDYGVAV
                     EQGRKAAQSDPNCFFIDDENSRTLFLGYAVAGQRLKAQFAQQGRVVDASHPLFVYLPC
                     GVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHDAISVQDIGIDNLTA
                     ADGLAVGRASGFVGRAMERLLDGLYTLDDQTMYDMLGWLAQEEGIRLEPSALAGMAGP
                     QRICASVAYQQRHGFSQTQLGNATHLIWATGGGMVPEDEMEQYLAKGR"
     gene            complement(7859..9196)
                     /gene="dsdX"
                     /locus_tag="OQP62_002015"
     CDS             complement(7859..9196)
                     /gene="dsdX"
                     /locus_tag="OQP62_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-serine transporter DsdX"
                     /protein_id="HCS1721576.1"
                     /translation="MHAQIWVVSTLLISIVLIVLTIVKFKFHPFLALLLASFFVGAMM
                     GIGPLEMVTAIENGIGGTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRCRWLSAD
                     VIMVLVGLICGITLFVEVGVVLLIPLAFSIAKKTHTSLLKLAIPLCTALMAVHCVVPP
                     HPAALFVANKLGADIGSVIVYGLLVGLMASLVGGPLFLKFLGNRLPFKPVPTEFADLE
                     VRAENTLPSLGATLFTVLLPIGLMLVKTVAELNMAKDGTLYTLLEFIGNPITAMFIAV
                     FVAYYILGLRQHMGMSALLTHTENGFGAIANILLIIGAGGAFNAILKSSGLADTLAVI
                     LSNMHMHPILLAWLVALILHAAVGSATVAMMGATAIVAPMLPLYPDVSPEIIAIAIGS
                     GTIGCTIVTDSLFWLVKQYCGATLNETFKYYTTATFIASVVALAGTFLLSFII"
     gene            9422..10345
                     /gene="dsdC"
                     /locus_tag="OQP62_002016"
     CDS             9422..10345
                     /gene="dsdC"
                     /locus_tag="OQP62_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator DsdC"
                     /protein_id="HCS1721577.1"
                     /translation="MEPLRDTRNRLLNGWQLSKLYTFEVAARHQSFALAADELSLSPS
                     AVSHRINQLEAELGIQLFVRSHRKVELTHEGKRVFWALKSSLDTLNQEILDIKNQELS
                     GTLTVYSRPSIAQCWLVPALGDFTRRYPSISLTMLTGNDNVNLQRAGIDLAIYFDDAP
                     SAQLTHHFLMDEAILPVCSPDYARRFALQDNLNNLRHCTLLHDRQAWSNDSGTDEWHS
                     WAQHFAVNLPDSSGIGFDRSDLAVIAAMNHIGVAMGRKRLVQKRLDSSELIAPFGDMR
                     LKCHQHYYVTTLPGRQWPKIEAFIRWLQEQV"
     gene            10409..11494
                     /locus_tag="OQP62_002017"
     CDS             10409..11494
                     /locus_tag="OQP62_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HCS1721578.1"
                     /translation="MVKILGGVVFKPLIASLILTSAVVYAKPMPLTAARYAQQLGVGM
                     DVDWARTERGIREFDPLVVRDFKAKGLTHVRIRVAGAPTEARLIHLRKLVEACEYYGV
                     IPIIAYQADAYKTDPSASHEKELINWWSVVARYFGQTSPLLGFDLIYEPADKLNHNMA
                     SLNRVYDKTIRLIHAIDPQRMIFVAPRMRAAPEDLSALKLPAQSQNYVLAEWHIFPWG
                     PLKSGGKYPWTSGTTAEKAAIRARINAAVRWQHKTGHASWVGGWAPGESIKMTPIASQ
                     FAFARFMACELKKAHIPYAINADTQFYDGEEGAWRPAQEPLLNAMIAPECETPGKKPG
                     EGNVKPSVPDAISVTPAAASTPRSAIP"
     gene            complement(11421..12605)
                     /gene="emrD"
                     /locus_tag="OQP62_002018"
     CDS             complement(11421..12605)
                     /gene="emrD"
                     /locus_tag="OQP62_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter EmrD"
                     /protein_id="HCS1721579.1"
                     /translation="MKRQRNVNLLLMLVLLVAVGQMAQTIYIPAIADMAQALNVREGA
                     VQSVMAAYLLTYGVSQLFYGPLSDRVGRRPVILVGMSIFMVATLIAMTTHSLTVLIAA
                     SAMQGMGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLDTLWN
                     WRACYAFLLVLCAGVTFSMARWMPETRPAGAPRTRLIASYKTLFGNGAFNCYLLMLIG
                     GLAGIAVFEACSGVLMGAVLGLSSMVVSILFILPIPAAFFGAWFAGRPNKRFSALMWQ
                     SVICCLLAGLMMWIPGWFGVMNVWTLLIPAALFFFGAGMLFPLATSGAMEPFPFLAGT
                     AGALVGGLQNIGSGVLAWLSAMLPQTGQGSLGLLMTLMGLLILACWLPLASRISHQGQ
                     TV"
     gene            complement(12808..13668)
                     /locus_tag="OQP62_002019"
                     /pseudo
     CDS             complement(12808..13668)
                     /locus_tag="OQP62_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462698.3"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
     gene            complement(13761..13850)
                     /gene="tisB"
                     /locus_tag="OQP62_002020"
     CDS             complement(13761..13850)
                     /gene="tisB"
                     /locus_tag="OQP62_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_453107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin TisB"
                     /protein_id="HCS1721580.1"
                     /translation="MSVVDITILILKLIVAALQLLDAVLKYLK"
     gene            complement(13847..13961)
                     /locus_tag="OQP62_002021"
                     /pseudo
     CDS             complement(13847..13961)
                     /locus_tag="OQP62_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009325922.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            14484..14582
                     /gene="ivbL"
                     /locus_tag="OQP62_002022"
     CDS             14484..14582
                     /gene="ivbL"
                     /locus_tag="OQP62_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ilvB operon leader peptide IvbL"
                     /protein_id="HCS1721581.1"
                     /translation="MNPSMLNATLLTTAPSRAVVVVRVVVVVGNAP"
     gene            14689..16377
                     /gene="ilvB"
                     /locus_tag="OQP62_002023"
     CDS             14689..16377
                     /gene="ilvB"
                     /locus_tag="OQP62_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HCS1721582.1"
                     /translation="MASSGTTSTPQRFTGAEFIVHFLERQGIRIVTGIPGGSILPVYD
                     ALSQSTQIRHILARHEQGAGFIAQGMARTESKPAVCMACSGPGATNLVTAIADARLDS
                     IPLICITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRNINELPQVMSDAFRLAQS
                     GRPGPVWIDVPKDVQTATIELDALPSPAEKSPPPEFSAESIREAAAMINAAKRPVLYL
                     GGGVINAPTRVRELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNFILQEA
                     DLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQL
                     IPHIEAQPREAWHQLVADLQQEFPCGIPQENNPLSHYGLINAVAACVDDNAIITTDVG
                     QHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPGNKVLCFSGDGSLMMN
                     IQEMATASENQLDVKIILMNNDALGLVHQQQSLFYKQGVFAATYPGSINFMQIAAGFG
                     LDTCDLNNEADPQAALQAIIRRPGPALIHVRIDAEEKVYPMVPPGAANTEMVGE"
     gene            16381..16671
                     /gene="ilvN"
                     /locus_tag="OQP62_002024"
     CDS             16381..16671
                     /gene="ilvN"
                     /locus_tag="OQP62_002024"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HCS1721583.1"
                     /translation="MQKQSHDNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPI
                     QGSDQSRIWLLVNDDQRLEQMISQIDKLEDVAKVVRNQSDPTMFNKIAVFFE"
     gene            complement(16673..17458)
                     /locus_tag="OQP62_002025"
     CDS             complement(16673..17458)
                     /locus_tag="OQP62_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR family transcriptional regulator"
                     /protein_id="HCS1721584.1"
                     /translation="METKQKERIRRLMELLKKTDRIHLKDAARMLEVSVMTIRRDLSQ
                     DDDPLPLTLLGGYIVMVNKPASSTNMPLPAKKTHHRDDLPVAILAAGLVRENDLVFFD
                     NGPEMPLVISMIPDDITFTGICYSHRVFIALNEKPNATAILCGGTYRAKSDAFYDANN
                     PSALDSLNPRKVFISASGVHEHFGVSWFNPDDLAAKRKAMERGLRKILLARHALFDEV
                     APASIGPLSAFDVLISDRPLPTDYAVHCRNGSVKVITPDSESE"
BASE COUNT         4121 a         4641 c         4844 g         4028 t
ORIGIN      
        1 cgggcctggc tatcccaacg atacgctaaa gcctgaaagt gaagcccgtg tgcagtatga
       61 tgacgagcat cgtctcttat caggacatcc catgaaacaa atcaccttta cgccgcgcca
      121 tcaccagctt accaacacca atacctggac acctgacagc cagtggctgg tctttgatgt
      181 gcggccttca ggcgcgtcat ttacgggcaa gactattgag cgtgtcaatg tgcataccgg
      241 cgacgtggag gtgatttatc gcgccgtgca gggcgcgcat gtcggtgtgg tgacggtgca
      301 tcctgccgac aattactatg tgtttattca tggccctgaa aaccctgatg agacgtggca
      361 ttacgatttc caccaccgtc ggggcgttat tgcaacgccg gggggcgtga ctaacctcga
      421 tgcgatggat attactgcgc cgtatactcc cggcgcgctg cgcggcggca gccacgtcca
      481 tgtatttagc ccgaacggcg agctggtgag ttttacctat aatgaccacg ttctgcatga
      541 gtgcgatccg gcgctggatc tgcgtaatgt cggcgtggcc gcgccgtatg ggccggtaac
      601 ggtgccagtt cagcatccgc gcgaatacag cggtagccac tggtgcgtac tggttagccg
      661 cacgacgcct gcgccgagac ctggcagcga tgacattaac cgcgcctatg aagagggctg
      721 ggtgggcaac cgccagatcg cctttattgg cgatacgctg tcgctgacgg gccaaaaagt
      781 cccggagttg tttattgtcg atttaccgtg tcatgaaaac ggctggaaac aggcaggcga
      841 cacgccgctg acgggaaccg aatcaacaat gccatcgccg ccgttgggcg tagttcagcg
      901 gcgtcttacc tttactcacc agcgtgttta tcctggactc actaacgaac cacgccactg
      961 ggtacgcagt aatccgcagg cgacggcgat cgcctttttg atgcgggacg ataacggcgt
     1021 agcgcaactg tggctgatat cgcctcaggg aggcgagccc cggcagttaa cgcatcatgc
     1081 gaccggcgta cagtcagcgt ttaactggca tccgtcgggt aaatggctgg gactggtgct
     1141 ggaaaatcgg attgcctgct gcgacgcaca aagtgggaag atcgacttct taaccgccag
     1201 gcacgacaac ccgccgtctg cggacgccgt cgttttttca ccggatgggc gacacgtcgc
     1261 atggatggaa gaggtgaaag gtttccgtca gctatgggtg acggaaaccg ggcgataaat
     1321 cagggaggag gcatcttcgc cggggggatg acggcattgg tcattttcgt ctcctcctcg
     1381 cttttctcga cgcgcgatct taccgaactg tctttgcgga agatgtccca cggcagaagg
     1441 atcgtatcca tcacggcggt aaacggcata tccaggatgg ccaacgattt ggtgccccag
     1501 tttgtctcat cgttaccgat catcgtagcg ctggcgcgcg tgccaggata agtaccctct
     1561 ttaccgccgg tgtgcgacat gacgcttgaa caaccgccta ataaaagcat cccattccat
     1621 attatcagcg ttaaccacac gttttttatc atcactcatt catctgttgg ttgtcgttat
     1681 ttgcatgatg agttatagcg atccgttgct aaaaataaca tcaccagtac gtggcactgt
     1741 ggcggtaatc gcactttaac aatcagtgct gtcccaacca gtctatgcaa tagccaataa
     1801 actgcaaaaa aaagtcggat taaaatactt gaaaagtacg tattcagacc catttataag
     1861 acgtagtgaa tagaagggca cgcctgatgg gtgttctggc aatcctggcc tgtccatgat
     1921 ggaaggtctg acattctcgc tgatttcagg agtttatgat tatgcgtaac tttgatttat
     1981 ccccgctgta ccgttctgcc attggttttg atcgtctgtt taacctgctt gaaaataacc
     2041 aaagccaaag taatggcggc taccctccgt acaacgttga gctggtagac gaaaaccact
     2101 accgcatcgc cattgccgtt gccggtttcg cggaaagcga actggagatt actgcccagg
     2161 ataatttact ggtggtaaaa ggcgctcatg cggacgagca gaaagaacgt acttacctgt
     2221 atcagggcat tgccgagcgt aactttgagc gtaagttcca gttagcggag aacattcacg
     2281 ttcgtggcgc aaacctggtc aacgggctgc tgtatatcga actggagcgc gtgattccgg
     2341 aagcgaacaa accgcgccgt atcgaaatta actgattccg tcgggtcgcg ttgcgcggcc
     2401 tgtcatccca tgctcgccgt cagggagcat attcgcacgt aaagtgtgaa ggtaaaaact
     2461 cgcttcttag aaggagaaat gattatgcgt aactacgatt tatccccact gttgcgtcaa
     2521 tggatcggtt ttgacaagct ggccaatgcg ctgcaaaaca gcggcgaaag ccagagcttc
     2581 ccgccctata acatcgaaaa aagcgacgat aaccattatc gcattacctt agcgttagcc
     2641 ggtttccgtc aggaagatct ggatattcaa ctggaaggca cgcgcctgac ggtgaaaggc
     2701 acgccggaac agccggaaaa cgagcccaaa tggttacatc agggcctggt catgcagcct
     2761 tttagcctga gctttacgct ggctgaaaat atggaagttt ccggcgcgac gtttaccaac
     2821 ggcctgctgt atattgattt aacccgtaac gagccggaaa ccattccgcc gcagcgtatc
     2881 gccattaacg aacgctccgc attaaatagc taataagctc cttgccttgc cccgccagag
     2941 atggcggggc ttttttgtgc cacgaaaaag ggtaagacgt tgccgaagtc aggacgtctg
     3001 tgcggttttg taatatgaga atgtgcgcca tgctgtatat atgccttaac ggttcagtca
     3061 taatccctat aaattgaaat gttactcaca gggaagagaa gatgagatga gtgatatcgc
     3121 attgacggtc agcgttctgg cgttggtggc ggttgtcggt ttatggatcg gcaacattaa
     3181 agtgcgcggt gtcggctttg gtattggcgg tgtgttgttc ggcggtatta tcgtcggcca
     3241 cttcgtcgat caggctgggg tgacgctgag cggcgatatg ctgcacttta tccaggagtt
     3301 cggcctgatc ctttttgttt ataccatcgg catacaggtg gggccggggt ttttcgcctc
     3361 gctgcgcgtt tccgggctac gtctgaatct gtttgccgtt ctgattgtga ttatgggcgg
     3421 gttggtcacc gcgattctgc ataaaatttt cgctattccg ctgccggtag tgctggggat
     3481 tttctccggc gcagtcacca atacgcctgc gttaggggcg ggtcagcaaa tcctgcgcga
     3541 tctgggaacg ccagtggatc tggtagatca gatggggatg agctatgcga tggcgtatcc
     3601 gtttggcatc tgcggtattt tgctcaccat gtggctgatg cggctgattt ttcgcgttaa
     3661 cgtcgaggcg gaggcgcaga agcacgaatc ctctctcgct aacggccatt cattaattca
     3721 gacaatgaat atccgtgtcg agaatccgaa cctcaataat atggctatcc aggatgtgcc
     3781 gatcctgaac agcgataaaa tcatttgctc acgcctgaaa cgcgatgaca cgctgatggt
     3841 gccgtcgccg gggacgatta tccaggcagg cgacctgctg cacctcgtcg gccaacctac
     3901 cgacctgcat aacgcgcaac tggtgatcgg taaggaagtg gacacctcgt tgtcgacgcg
     3961 cggcacggat ttacgtgtcg agcgtgtggt catcaccaac gaaaaagtgc tcggcaaacg
     4021 tatccgcgat ttgcacttta aagagcgtta tgacgtggtt atctcccgcc ttaaccgcgc
     4081 gggcgttgag ctggtcgcca gcagcgacgc tagcctgcag tttggcgaca ttctcaatct
     4141 ggtggggcgt cctgcctcga ttgatgcggt agccaatgtg gtcggcaacg cgcagcaaaa
     4201 actccagcag gtgcagatgc tgccggtgtt tatcggcatc ggattagggg ttctgcttgg
     4261 gtcaatcccg ttgtttgtgc cgggattccc ggtcgcgtta aaactggggc tggccggcgg
     4321 gccgttgatc atggcgctaa ttttggggcg tatcggcagc atcggtaagc tgtactggtt
     4381 tatgccgccg agcgccaacc tcgcgctgcg tgaattaggc atcgttttgt ttctggcggt
     4441 cgttggactg aaatccggcg gcgattttgt cgatacgctg acacagggcg aaggattaag
     4501 ctggattggc tacggtattt tcatcaccgc tattccgctg attaccgtcg gtttgctggc
     4561 gcgaattttt gccaaaatga actacctgac gctgtgcggg atgctggccg gttcgatgac
     4621 cgatccgcca gcgctggcat ttgccaacaa tcttcatgcc accagcggcg cggcggcgct
     4681 ctcttacgcg accgtctatc cgttagtgat gttcctgcgt attatcacgc cacaactgct
     4741 ggcggtgatt ttttggggaa tgggttagcg cctgatggcg cgttgcttat ccggcctatg
     4801 cactgtgtta aatccaggct ggataacgcg cgccgcaccg gtcacacttc tgctcttctt
     4861 cttatctctt tcctcaatga acgtgctaat cagcgtaatg gcaacgagca taattccaat
     4921 tttttcagtt agttatcaat cttcatcgcc ttttttttcg tcgcaacggg tagtttttca
     4981 gcttttaatt cggcaataat gcctttcctg gcggtggcgc tgaaaaaggt cgcaactgaa
     5041 atgaaaaata gcggcaatga gcgcggttgc gccgaaacac gtcaccagtg aactacagtt
     5101 attttgcaat aagattccct tgctgcggga taatgtgaag catatcagca acaacgtgag
     5161 tggtattctg aaaacgaacg ggaatacata agaacgtaaa aggagtcgtc atgaagattt
     5221 cccgcctcgg agaagcgccg gattatcgct tctcactggc aaatgagcgc acctttctgg
     5281 cgtagattcg cacctcgctg ggatttctgg cggcaggcgt cggtcttgat cagctcgccc
     5341 cggattttgc cacgccggtg atccgtgaac tgctggcgct actgttgtgt ctgtttgcgg
     5401 gcggcctggc gatttatggc tatctacgct ggttacgtaa tgaaaaagcg atgcgcctga
     5461 aagaggattt gccttatacc catagcctgt tgatcatcag cgttattttg atgattgtcg
     5521 cggtgatagt gatgaggctg gtactgtatg ccggatagtc gtaaagcccg tcggcagaac
     5581 gatccgggac tgcaaccgga gcgtacgtcg ctggcctggt ttcgcacgct gctgggatac
     5641 ggggcgttaa tggcgttagc cgtcaggcac tactggcatc aggcggggtt cttgttctgg
     5701 gtgtcaatca gcgttctggc gatagtggcg gtgattcttt ggcgttatac cctgagtcgt
     5761 aatttgatgg atgtcgcgca tagcgatttt tccgaaactc atgtcatgcg tgacaaattt
     5821 ttgatctccc tcgcggtgtt gtcgctcgca atcctgtttg ctgttaccca tattcgccaa
     5881 cttattgcat ttatcgggga ttttatatga caggacgtca ggacattgtc gtgagtaatg
     5941 accagattca ggtcgtcgta aatcgccaga atagccagcg ccctcagcaa ctgtaccgta
     6001 acttacaacg gctcggcatt cgcaatgtcc attttatccc attgttggaa catgaccgga
     6061 acggaatgtt gaccgaggat tcattgtgtt cagcagactg ggggcggttt ttaaatagcg
     6121 tatttgatat ttgggtacgt gaagatattc agcgtatctc ggtccgcctt tttgatgaga
     6181 cgctacagca gtggtgcggc ggcaggaatg gcgctaaaac gccggacaag gcgccgctaa
     6241 gcgctgaatg tcagaagtgc tctttattac gattttgcgg cggcggatgc cctgagcatc
     6301 gggatagcca ggggaaaaat cagctttgcg agggctacca gacctttttt aactactcct
     6361 cgccgcatat gcgggtgatg cgggatttac tgaaacagca tcgctcgccg gaggagttga
     6421 tggcgatgct gcgttaacgt cacaggcctg ataagcgtag cgccatcagg cgatggcgtg
     6481 ccggatggcg ctgccgtctt tccggcacta agcgagtatt agcgtccttt tgccaggtat
     6541 tgttccattt catcctccgg caccatgccg cccccggttg cccatatcag atgcgtcgcg
     6601 ttgccgagct gcgtctgact gaatccatgc ctttgctgat acgcgacgga ggcgcaaatg
     6661 cgctgtggcc cggccatccc cgccagagct gatggctcca gtcgaattcc ttcctcctgc
     6721 gccagccagc ccagcatgtc atacattgtt tgatcgtcta aggtatagag gccgtcaagc
     6781 agacgctcca ttgcccgacc aacaaagccc gaagcgcgac ctaccgccag gccgtcagcc
     6841 gccgtcaggt tatcaatacc gatatcttgt actgagatgg catcgtgcag accggtataa
     6901 acgccgagta acatgcaggg tgaatgggtc ggttcggcaa agaaacagtg gacgttgtcg
     6961 ccaaacgcca gtttcaggcc aaaggcgacg ccgccagggc cgccgccaac gccgcacggc
     7021 agataaacaa acagtgggtg gctggcgtca acgacgcgtc cctgctgcgc gaattgcgct
     7081 ttcagacgct gacccgctac cgcatagccc agaaatagcg tgcgagagtt ttcatcatcg
     7141 ataaagaaac agtttggatc ggattgcgct gctttacgac cctgctcaac cgccacgccg
     7201 taatcatctt cgtattccac gaccgtcacg ccgtggctac gcagcttcgc ctttttccag
     7261 gcgcgggcgt cggcagacat atgtaccgtc actttaaaac cgatgcaggc gctcatgata
     7321 ccgatcgata gccccagatt gccggttgaa ccgacggcga tactgtactg gctgaagaat
     7381 tgtttaaatt ccggcgaaag caacacgcta tagtcatcgt cggtggttaa cagacccgcc
     7441 tccagcgcca gtttttccgc gtgcgttagc acctcgtaga tgccgccgcg cgctttaatg
     7501 gaaccagaga ttgctaggtg actgtctttt tttaatagca tttcaccgtc gatcgtttgc
     7561 ccatactctt tttccagccg tttttgcatg gccggaatag cgaccacgtc agattcgatt
     7621 atgccgccag cggcagcggt ttgcggaaac gcttttgcca gatacggcgc aaagcgcgcc
     7681 agacggtcat gggcggcgtt tacgtcctgc tccgtcaggc cgacatacgg tagaccttgt
     7741 gcaagagagg tggcgcccgg gttaaaccag gtggtttctt tgagggcgac cagatcctcg
     7801 accaaaggat accgggcgat gagctttagt atgttttcca tagtacgtct ctttacgatc
     7861 agatgataaa ggaaagcagg aatgtgccag ccagtgcaac gacagatgcg ataaacgtgg
     7921 ccgtcgtata gtatttaaac gtttcattca gcgtagcgcc gcaatactgc ttgaccagcc
     7981 agaacaggga atcggtcacg atcgtgcagc caatggtgcc ggaaccgatg gcaatagcga
     8041 tgatctccgg gctaacgtca ggatagagcg gcagcatggg cgcaacaatc gcggtggcgc
     8101 ccatcatcgc caccgtcgca gagccgaccg ccgcgtgcag aatcagcgct accagccatg
     8161 ccagcagaat cgggtgcata tgcatatttg agaggatcac cgccagcgtg tccgccagtc
     8221 cgctactttt gagaatggcg ttgaacgcgc cgcccgcgcc gataatcagc aggatgttcg
     8281 caatggcgcc aaagccgttt tcggtgtggg taagtagcgc gctcataccc atatgctggc
     8341 gcagaccgag tatgtaatac gccacaaaga cagcgataaa catcgcggtg atcggattac
     8401 cgataaactc cagcagcgta tacaacgtgc cgtctttcgc catattcagt tcagcgacgg
     8461 ttttcaccag catcaggcca atcggcagca gaacggtaaa cagcgttgcg cccagcgacg
     8521 gcagggtgtt ttcggcacgc acttcaagat ccgcaaactc tgtcggtacg ggcttgaacg
     8581 gcagacgatt acccagaaac tttaagaaca gcgggccgcc gaccaatgag gccatcagtc
     8641 cgaccagcag accgtagaca atcaccgagc cgatatccgc ccccagttta tttgcgacaa
     8701 acagcgcagc cggatgcggc ggtaccacgc aatggacggc catcagcgcg gtacacagcg
     8761 gaatggccag cttcagcagc gaggtatggg tctttttagc gatagaaaac gccagtggga
     8821 tgagcaacac gacgcccact tccacgaaca acgtgattcc gcaaatcagc cccaccagta
     8881 ccatgatcac gtcagcagag agccagcggc agcgctggag cgtaagcccg atgcgttccg
     8941 ccgcgccgga aacctccatc attttgccga ggatggtgcc aagaccgata acggcggcca
     9001 gaaaaccgag cgtaccgcct attccgtttt ctatcgccgt gaccatctcc agcggcccta
     9061 tgcccatcat cgcgccgaca aagaaactgg cgagcagtaa cgccaggaag gggtggaatt
     9121 taaacttcac gatggtcaat acgattaaca cgatgctgat cagcagcgtg ctcactaccc
     9181 agatttgagc gtgcatatct cacctaccct gtgattaatc tgttcttatt ggacagaaaa
     9241 acagcacacc ctgacaaacg atataatttg ccattcacat gatgtaaatt gaatcaacta
     9301 tgtgatttcc atctaatatt gcctttattt tgcgatatgg ttcattttac ttcatctatg
     9361 tgcggatttt ttcagcgcgt ttttttacac ttcgggaaat taaaagatga ctgaggttgc
     9421 catggaaccc cttcgcgata cccgaaaccg cttactcaac ggctggcagt tatccaaact
     9481 ctatactttt gaagtcgcgg ccagacacca gtcctttgct ctggcggcag atgagctgtc
     9541 gttaagcccc agtgcggtaa gccatcgtat caatcaactg gaagccgagt tgggaatcca
     9601 gctatttgtc cgctctcacc gtaaagtgga gcttacccat gaaggcaaac gggtattctg
     9661 ggcgctgaaa tcgtcgctgg atacgttgaa tcaggaaatc ctcgatatca aaaatcagga
     9721 actgtccggc acgttgaccg tgtattcacg cccctctatc gcccagtgct ggctggtgcc
     9781 cgcgttgggg gactttaccc gtcgctatcc gtcaatttct ctcactatgc tgaccggcaa
     9841 cgataacgtt aacctacagc gtgccggcat tgacctggct atctattttg acgatgcgcc
     9901 gtcggcgcag ctcacgcacc attttttaat ggatgaggcg attttgcccg tttgcagccc
     9961 ggattacgcc cgtcgtttcg ccttgcagga caacctgaat aacctgcggc actgtacgct
    10021 cttacacgac agacaggcgt ggagtaacga ttctggcacc gatgagtggc acagttgggc
    10081 gcagcatttt gcggtaaatt tgccggattc atccggcatt ggcttcgatc gttctgattt
    10141 agcggtgatt gccgcgatga accatattgg cgtggcgatg ggacgtaaac gactggtgca
    10201 aaagcgtctc gacagcagtg aactgattgc gccttttggt gacatgagac tgaaatgtca
    10261 tcagcattat tatgtcacca ctctgcctgg caggcagtgg ccgaaaatcg aggcatttat
    10321 tcgctggttg caggaacagg tgtgaagatt tattacgctt tgccgctaca cctgccggga
    10381 gtgaatatgc taaatacgtg ctatcaccgt ggtaaaaatt ttagggggcg tcgtgtttaa
    10441 accgcttatt gcctctctca tactgaccag cgcggtcgtc tatgcgaaac cgatgccttt
    10501 gacggcggcg cgctatgcgc agcagcttgg cgttgggatg gatgttgact gggcgcgaac
    10561 ggaacggggt attcgcgagt ttgatccgtt ggtcgtgcgg gattttaagg caaaagggtt
    10621 aacgcatgtc cgtattcgtg tggcaggcgc gccgacggaa gcgcgcctca tccatttgcg
    10681 taagctggta gaggcctgcg aatactatgg cgtcataccc attattgcct atcaggcgga
    10741 tgcgtataaa accgatccca gcgccagcca tgaaaaggag ctgatcaact ggtggagcgt
    10801 ggtcgcgcgc tattttggtc agacatcccc gcttctgggg ttcgatctca tttatgagcc
    10861 tgccgacaaa cttaatcata atatggcgtc gctgaatcgc gtatatgaca aaaccatccg
    10921 cctgattcac gccattgacc cacagcggat gattttcgtt gccccccgca tgcgcgccgc
    10981 gccggaggat ttatcggcgc ttaaactgcc ggcgcaaagc cagaactatg tactggcgga
    11041 gtggcacatc ttcccgtggg gacccctgaa aagcggcggt aaatatccgt ggacgtcagg
    11101 cacgacggcg gaaaaagcgg cgattcgggc acggattaat gccgcggttc gctggcagca
    11161 taagaccggc catgcaagct gggtgggcgg atgggcgccg ggagagtcga taaaaatgac
    11221 gccgatcgct tcacagttcg cgtttgcccg ttttatggcc tgcgagctga aaaaagcgca
    11281 tattccgtat gcgataaacg cggacactca gttttatgac ggcgaagaag gagcgtggcg
    11341 tccggcgcag gagcccctgc tcaatgcgat gatcgcgccg gaatgtgaaa cgcccggcaa
    11401 aaagccgggc gaggggaatg ttaaaccgtc tgtccctgat gcgatatccg tgacgccagc
    11461 ggcagccagc acgccaagat cagcaatccc ataagggtca tcagcaatcc cagactgccc
    11521 tgaccggttt gcggcagcat tgccgaaagc cacgccagta cgccggaacc aatattttgc
    11581 agcccgccga ccagcgcgcc agcggtgcct gcgaggaacg gaaacggctc catcgcgccg
    11641 ctggtggcca gtggaaataa catcccggcg ccgaagaaaa acagcgcagc ggggatgagt
    11701 agcgtccaga cgttcatcac gccaaaccag ccgggaatcc acatcataag gcctgccagc
    11761 agacagcaaa taactgactg ccacatcagg gctgagaagc gtttattcgg gcgtccggca
    11821 aaccaggcgc cgaagaacgc cgccggaatc ggcagaataa acagaatgct taccaccata
    11881 ctgctgagac ctaatactgc tcccatcagc acgccggaac aggcttcaaa gaccgcaatg
    11941 ccagccagcc cgccgattag catcagcagg taacagttaa atgcgccgtt gccaaacagc
    12001 gtcttatagc tggcgatcag ccgcgtacgc ggcgcgccgg cggggcgggt ttccggcatc
    12061 cagcgcgcca tgctgaaggt gacgccagcg caaagcacca gcaggaaagc gtaacacgcg
    12121 cgccagttcc acagggtatc cagcaggccg ccaatcagcg gcgctaacag cgggctgacc
    12181 agaatcccca tatttaacag gctattggca tgacgaagtt gcgttccttc atacagatcg
    12241 cgcgggagcg ttctcgccat tactccgcca acgccggttc ccatcccttg catggcgctg
    12301 gcggcaatca acaccgtcaa actatgcgtg gtcatggcga tcagagtcgc taccataaaa
    12361 atagacatgc cgacgaggat taccgggcgg cgcccaaccc ggtcggaaag cgggccgtaa
    12421 aacagttgcg agacgccgta ggtcaggagg taagcagcca ttacgctctg gacggcgcct
    12481 tcccggacgt ttagcgcttg tgccatatcg gcgatggcgg gaatataaat ggtttgcgcc
    12541 atctgcccta cggccaccag taacaccaac atcaacaaca aattgacgtt tctctgcctt
    12601 ttcatttcgc tgattacttt tcaaaaaaag aaaaaataag aataacttgc tgcgcattcc
    12661 cataaatgcg agaggaatct atcacaccag aaaaagaagg ccagacagca accagcaatg
    12721 gcagacgaag gaacggcagg atatgtaaac aaaagcggca acaaatgttg ccgagaatgt
    12781 gttacgtctg cagctgttat tgggcaatca tgacagacgg agtaaaatcg ccccgagggc
    12841 aatcccgccc gccgccacca gacgtagccc ggccactttc tctttaagca acagccaggc
    12901 tatcagcgcg ccgaataaaa tcgacgtctc acgcagcgcg gcgaccaccg ccagcggcgc
    12961 ctgggtcatg gcccatagcg ccagcccata agatcccata gtgccaatcc cgccaaaaat
    13021 gccttttttc cactgttgcg ccagataacg cgacgcttcc cgccgccgcg caatcatcgc
    13081 ccaagttaac aggcaggcgc cgttgagaaa aaatgaccat agcgtatagc ccagcgccgt
    13141 ttcggagagt cttacgccgg tcccgtccac cagcgtatat ccggcaataa aacaggcgtt
    13201 agttaatgcc agcacgacac cacgttgaga gctggcgcgg ccattacagg ccatcccaag
    13261 tatcgccatg cagatcactg cgatgccgac ctaggccatc gacgacaggc tgtcgccaag
    13321 aaacagaacg ctaatgagcg ccaccagcag cggcgcggtg ccgcgcataa gaggataggt
    13381 ctggctcatg tccgagacct gataggtttt cgccaccagg acggtataca ccacctggag
    13441 cgcggtagag gccgctaaaa aagggatact ggcgtgagct ggctgcggcg agaagggcaa
    13501 aaggatcaat gccatgaccg ccgcggaacc gctgacgccg atcgcggcgt agagcttatc
    13561 gtttcccgct ttgacaatgg cgttccagct ggcatgtagc agcgcggcga acagcaaaat
    13621 gcagaaaacg gaaagggtca tagcatcagg cgtcgttgag ggtgtcataa aaacgtaaca
    13681 tacccgggaa gcgaaagacc agcggataag gtgaaagggg agcggttgcc cgctcccctt
    13741 cggtgcggct tgaatctgaa ttacttaagg tatttcagaa cagcatcaag cagttgcagt
    13801 gctgcaacaa tgagtttcag gataagaatg gtgatatcca ctacgctcat acgcgtctcc
    13861 tgtggttaag gagcactgcc agccgacgta cctttccgct gcctgttgcc agctgttgcg
    13921 cacgcgatcc cttttgcgag gaatagtgtg cgtgttgaca taacacagtg tgctcacgag
    13981 ggggttaagg cgctgacggc accacccgtt tcagccagga cttcgttgcg ccggtttacg
    14041 atgcggcccc cgcataacac attgtgtcaa agacattata gttaagtgct gtataaatga
    14101 acagtaattt atagacagaa cggagcttct gatccatact caaattcatc aaaattcgcg
    14161 ccgaaattgc gcgttctgca cagaacgcgt atacttctgc tgttgacata acacagtgtg
    14221 cttcgcggct accacccgca ttacgctgta agaacctcgc ttcggcgagg ttttttgttt
    14281 tcaggcattg tgaaacgcgt gatcatcaat cccggcgatt accggagggc gctacgctta
    14341 tcacgcctat actcaaagcg tgtaaattcg tagaaaaatg tgatcgctga cgcatttttg
    14401 tgcagatgaa aatttttccg ttgtcatgct gaaagcgctg tgcttgtata aaacgtgtta
    14461 ataacaaaca gacaaggccc ctaatgaacc cttccatgct gaacgcgacc ctactaacaa
    14521 ctgcgccatc tcgcgcagtg gtcgtcgtgc gtgtggtggt ggtcgtcggc aatgcgccgt
    14581 agggtccgga acacacacga ttccaaaacc ccgccggcgc aaaccgggcg gggttttttg
    14641 tttaagacac cttcccggaa cgtcggctca gaataaaagg aatggagcat ggcaagttcg
    14701 ggcacaacat ctacacctca gcgctttacg ggcgcggaat ttatagttca ttttctggag
    14761 cgccagggga ttcgtatcgt caccggcatt cccggcggtt cgatcctccc cgtttacgac
    14821 gcgttaagcc aaagcacgca aatccgtcat attctggcgc gccacgaaca aggcgcgggg
    14881 tttattgcgc aggggatggc gcggacggag agtaaacctg ctgtttgtat ggcctgtagc
    14941 gggccaggcg cgaccaatct ggtcacggct attgccgatg cgcgcctgga ttccattccg
    15001 ttaatctgca ttaccgggca ggttccggcg tccatgatcg gtactgacgc gtttcaggaa
    15061 gtggatacct acggtatctc tatccccatc accaagcaca actatctggt cagaaatatc
    15121 aatgagctgc ctcaggtgat gagcgatgct tttcgtctgg cgcagtcggg gcgtcctggc
    15181 ccggtgtgga tagacgttcc taaagatgtg cagacggcga ccattgagct ggatgcgttg
    15241 ccgtcgccgg cggaaaaatc acccccgccg gagtttagcg cggagagtat ccgcgaggcc
    15301 gccgcaatga ttaacgcggc gaagcgtccg gtgctgtatc tgggcggcgg cgtgatcaat
    15361 gcgccgacac gcgtgcgcga actggcggaa aaagcgcaac tgccgacgac aatgacctta
    15421 atggcgctgg gaatgctgcc taaggcgcat ccgctgtcgt taggaatgct gggaatgcac
    15481 ggcgcgcgca gtaccaattt tattctgcaa gaggccgatt tactgattgt tctgggcgcg
    15541 cgttttgatg accgggcgat tggcaaaacg gagcagtttt gtccgaacgc caaaatcatc
    15601 catgtggata tcgatcgcgc cgagttaggc aaaattaagc agccgcatgt ggctattcag
    15661 gcggatgtcg atgatgtact ggcacagtta attccccata tcgaggcaca gccgcgggaa
    15721 gcatggcatc agttggtggc ggacttgcag caagaattcc cttgcggtat tccccaggaa
    15781 aataacccgc ttagtcacta tgggctgatt aacgcggtcg cagcctgtgt ggacgacaac
    15841 gcgattatta ccactgacgt aggtcagcat cagatgtgga ccgcgcaggc ttatccgctc
    15901 aaccgtccgc gtcagtggct gacttccggc gggctgggca ccatggggtt tggtctgccc
    15961 gcggcgattg gcgcggcgct ggcgaatccg ggcaacaagg tgctgtgttt ttccggcgac
    16021 ggtagtttga tgatgaatat tcaggagatg gctaccgcca gcgaaaacca gttggatgtg
    16081 aaaatcatcc tgatgaataa cgacgcgctg ggactggtgc atcagcaaca gagtctgttc
    16141 tataaacagg gcgtttttgc ggcaacctat ccgggaagca tcaactttat gcagattgcc
    16201 gccgggtttg gtctggacac ctgtgatttg aataacgaag ccgatccaca ggcggcgttg
    16261 caggctatca ttcgtcgtcc tggaccggcg ttgatccacg tgcgcattga tgcagaagaa
    16321 aaagtgtatc cgatggtgcc gccgggtgcg gcaaatacag agatggtggg ggaataagcc
    16381 atgcagaaac aatcacatga taacgttatt ctggagctga ccgttcgcaa ccatcctggc
    16441 gtgatgaccc acgtctgcgg gctgttcgcc cgacgcgctt tcaacgttga gggtattctc
    16501 tgtttaccga ttcagggtag cgatcagagc cgcatctggc ttctggtcaa tgacgatcag
    16561 cggcttgaac agatgataag tcagatcgat aaactggaag acgtggcgaa ggtggtacga
    16621 aaccagtccg atcccaccat gttcaataaa attgccgtct tttttgagta agttattcac
    16681 tttccgaatc aggcgtgatg actttgacgg aaccattccg acagtgaacg gcataatctg
    16741 tcggtaatgg gcgatcgcta atcaggacat caaaggcaga aagcggacca atgctggcag
    16801 gcgcgacctc atcaaacagg gcgtgacgcg ccagcaaaat tttgcgcaga ccgcgctcca
    16861 tcgctttacg tttggcggca agatcatccg ggttaaacca gctcacgcca aaatgttcat
    16921 gtacgccgct ggcggaaata aacactttgc gcggattaag cgaatccagc gccgaaggat
    16981 tattggcatc ataaaaggca tcgctcttgg cccgataggt gccgccgcac agaatcgctg
    17041 tggcattagg cttttcattc agcgcgataa atacccgatg cgagtagcaa atcccggtaa
    17101 aggtaatatc atccggtatc atgctgatga ctaatggcat ttccggaccg ttatcaaaaa
    17161 aaaccagatc gttttcacgc accaggccgg cggccaagat cgcaacggga aggtcgtccc
    17221 gatgatgcgt ctttttcgcc ggcagcggca tattggttga agacgcaggc ttatttacca
    17281 tgacgatata gccgccgagc agcgtcagcg gtaaagggtc atcatcctgg ctgagatcgc
    17341 ggcgaatggt catcaccgaa acttccagca tccgcgcggc gtctttcaga tggattcgat
    17401 cggtcttttt cagtaactcc atcaagcgtc ggatacgttc tttttgcttg gtctccattc
    17461 accctctccg caaatcatgt tgttatgttc catcagtaac atttatgtgt ttctgagaac
    17521 attacagtgt ggcactacta tacgtctggc cgtcaggaaa taaaagtggg tttattcgcg
    17581 ttttataaca ataaatagtt aattttcagt aaattgtaac cctaaaaatg attt
//
LOCUS       DAJVSD010000073        17630 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.073, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000073 DAJVSD010000000
VERSION     DAJVSD010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 17630)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17630)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17630
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.073"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            239..1168
                     /locus_tag="OQP62_002026"
     CDS             239..1168
                     /locus_tag="OQP62_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HCS1721585.1"
                     /translation="MTMQQSDMERYNPLLMLKEVMAQTPYRHKRWGERKFRYKFVLRC
                     LINPVTTIKYFNELCHLSQPRTLIIHRPLLPAKIQRPYLYTGLSIRCRAKAILEHYQF
                     VQSFPESKIKKILLSEEQILLAHLEGKNGALVDIYCGPCGYDREGELTLTLCFNDTPL
                     ARLSFSFIRHEGKQIALVAGLQGPSKHIGPQVIRNATKDCYGLFPKRMLYEAFATLMQ
                     ACNVDEIYAVSENNHVYRQLRYLFQKKKTFVASYSEFWESLNGVKKGALYHLPSQVMR
                     KAPESIPSKKRAEYRKRYHILDTIIQEVNSLSR"
     gene            1462..2358
                     /locus_tag="OQP62_002027"
     CDS             1462..2358
                     /locus_tag="OQP62_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antimicrobial resistance protein Mig-14"
                     /protein_id="HCS1721586.1"
                     /translation="MKIQEVKRILTRWQPSSFTLYREVFTQYGGSINMHPDIVDYFMK
                     RHNWHFKFFHYKEDDKIKGAYFICNDQNIGILTRRTFPLSSDEILIPMAPDLRCFLPD
                     RTNRLSALHQPQIRNAIWKLARKKQNCLVKETFSSKFEKTRRNEYQRFLKKGGSVKSV
                     ADCSSDELTHIFIELFRSRFGNTSSCYPADNLANFFSQLHHLLFGHILYIEGIPCAFD
                     IVLKSESQMNVYFDVSNGAIKNECRPLSPGSILMWLNISRARHYCQERQKKLLFSIGI
                     LKPEWEYKRMWSTPYFTGKSIC"
     gene            complement(3080..3985)
                     /locus_tag="OQP62_002028"
     CDS             complement(3080..3985)
                     /locus_tag="OQP62_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001574833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HoxN/HupN/NixA family nickel/cobalt transporter"
                     /protein_id="HCS1721587.1"
                     /translation="MLSAAILAYSFGLRHAVDADHIAAIDTVTRKLMQQGKTPLGVGA
                     FFSLGHSTIVVLACLAIVVTSMAFRDRIDVLHQYGSLIGTAVSAFFLLAMALLNLFIL
                     FNVWRQFRSVTRGESVGAHDEAIPGGLMTRIFQRTFRLVTSSWHMYFVGFLFGLGFDT
                     ATEVGLLGISASAANQGLSLWSMMIFPVLFTAGMALVDSLDNFVMVGAYGWAFSHPLR
                     KLYYNITITAASVIVALAIGGLEALGLIDDALQLSGTFWQTVSTLNDHMGNVGFWVVG
                     AFVLFWLLSLLNYRWRGYDKITLNT"
     gene            complement(4226..5641)
                     /locus_tag="OQP62_002029"
     CDS             complement(4226..5641)
                     /locus_tag="OQP62_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HCS1721588.1"
                     /translation="MKWVKPQSLYLQLLLFLGLPLILLWGLSAFNSYVNALQAATQAY
                     DRTLLSSARTVSERLVVRNNHLEVNVPWVVLDSFELNMNDRLYYKVVDPSGKVISGYD
                     DLPAMPPATPRTRLYPALAWFYHTEYRGEAIRVARLLQPVNEGGIIGMAEVYVAETLQ
                     SRRYLAGQLLFSSWISQGLLVLLTLVLVGWLLRRILRPMRQLSSLMVRREPGLLTPLP
                     ELLPWSETRLLIVAFNRYIDRLRGILSRQERFSADASHQLKTPLAVLKTQAAVALASQ
                     HPHHWYESLQAMSVTLDSTIQLTERLLQLSAVKHKEQGERRFSPVNLYDIVQSGCFTR
                     LAQARSKHIDLGYEGEQEAMWIEGDEVLLSELCGNLLDNALKYTPEQGIVTARLERDG
                     DAVTLVVEDSGPGIDNEHIHLALQPFHRLDNVGNVAGAGIGLALVNDIARLHRTHPHF
                     SRSEALGGLYVRIRFLSLVPQ"
     gene            complement(5628..6302)
                     /gene="tctD"
                     /locus_tag="OQP62_002030"
     CDS             complement(5628..6302)
                     /gene="tctD"
                     /locus_tag="OQP62_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator TctD"
                     /protein_id="HCS1721589.1"
                     /translation="MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEM
                     YALMVLDINMPGMDGLEVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKP
                     FELEELDARLRALLRRSAGLVHEVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVL
                     MYRRTRPVSRQQLFEQVFSLNDEVSPESIELYIHRLRKKLQGSDVRITTLRGLGYVLE
                     RGDEVG"
     gene            6457..7266
                     /locus_tag="OQP62_002031"
     CDS             6457..7266
                     /locus_tag="OQP62_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HCS1721590.1"
                     /translation="MKKQLLRTLTASILLMSTSVLAQEAPSRTECIAPAKPGGGSLLN
                     LSQGKFGRYGVDDVRWLASVGTDYGMIAVRADSPWKTLKDLMTAMEKDPNSVVIGAGA
                     SIGSQDWMKSALLAQKANVDPHKMRYVAFEGGGEPVTALMGNHVQVVSGDLSEMVPYL
                     GGDKIRVLAVFSENRLLGQLANVPTAKEQGYDLVWPIIRGFYVGPKVSDADYQWWVDT
                     FKKLQQTDEFKKQRDLRGLFEFDMTGQQLDDYVKKQVTDYREQAKAFGLAK"
     gene            7278..7712
                     /locus_tag="OQP62_002032"
     CDS             7278..7712
                     /locus_tag="OQP62_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461713.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter TctB
                     family protein"
                     /protein_id="HCS1721591.1"
                     /translation="MMSDRIFAGIWLLLCIAGLFIAWQIQSEYSYEPVGPRPFPLGII
                     GLMALCALALLLRHPDTVSWPRRHVLQKLITMIIILLMYAWGFEWLGFPIATALLTMV
                     IGMLFGATIPAAGISGAVLGILLWYAFDRLLDVTLPLGAWLS"
     gene            7723..9237
                     /locus_tag="OQP62_002033"
     CDS             7723..9237
                     /locus_tag="OQP62_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003846009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter permease"
                     /protein_id="HCS1721592.1"
                     /translation="MDTWICLSQGFAVAMTPENLVIALIGCFVGTIVGLLPGLGPING
                     VAILLPLAFALHLPAESALILLATVYIGCEYGGRISSILLNVPGDAAAIMTALDGYPM
                     AQQGKGGVALSISAVSSFFGSLIAIGGIILFAPLLAQWSLAFGPAEYFALMVFAIACL
                     GSMMAQNPLKSFLAALIGLGLATVGVDANTGVYRFTFDSVHLSDGVQFIVVVIGLFSV
                     SEILLMLEHTSSGQTMVRKTGRMLFNLKEGAQCIGTTLRSSVIGFFVGVLPGAGATIA
                     SAITYMTEKKLSGNSDSFGKGDIRGVAAPEAANNASACGSFIPMLTLGVPGSGTTAVM
                     MGALTLYNITPGPAMFTEQPDIVWGLIAALLIANVMLLIMNIPLIGLFTRMLTIPLWF
                     LVPAIAAVSAVGVYAVHSPTFDLVLMVALGVLGYILRKMHFPMSPLILGCVLGEMLEQ
                     NLRRALSISNGNMAILWQSGVAKALLIMAIIVIVVPPVLRLIRKHSRKPQVDAS"
     gene            9540..10517
                     /gene="csiD"
                     /locus_tag="OQP62_002034"
     CDS             9540..10517
                     /gene="csiD"
                     /locus_tag="OQP62_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417145.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation induced protein CsiD"
                     /protein_id="HCS1721593.1"
                     /translation="MNALTAVKANTDDLAQRHTGFILAPSAQSPRLLALTFTADTTRQ
                     FLHQVAQWPVQALEYKSFLRFKIGKILDDLCGNQLQPLLIKTLLNRAQGALLISAEGI
                     DDVAQAEEMVKLATAVAHLIGRSNYDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELH
                     NDGTYVEEVTDYVLMMKIDEQNMEGGNSLLLHLDDWEHLESFFTHPLARRVMRWAAPP
                     SKNVSHDVWHPVFDVDQQGRPVMRYIDQFVQPKDFEEGVWLSELSDALETSQNILSVP
                     VPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYFAYAASHYQTHQ"
     gene            10543..11811
                     /gene="lhgO"
                     /locus_tag="OQP62_002035"
     CDS             10543..11811
                     /gene="lhgO"
                     /locus_tag="OQP62_002035"
                     /EC_number="1.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-2-hydroxyglutarate oxidase"
                     /protein_id="HCS1721594.1"
                     /translation="MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTG
                     HNSGVIHAGVYYTPGSLKARFCLAGNQATKTFCDQNNIRYDTCGKMLVATSELEMARM
                     RALWERTAANGLEREWLNAAELREREPNIIGLGGIFVPSSGIVSYRDVATAMANRFQA
                     KGGEIIYHAEVSALTEHAAGVIIRTSQGREIETATLIGCAGLMADRLVKMLGVEPGFI
                     ICPFRGEYFRLAPRHNRIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLALKR
                     EGYRKRDVSFTDTLEIFRSAGIRRVLQNHLLSGLGEMKNSLCKSGYLRRVQKYCPSLT
                     VNDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRSIHTCNAPSPAATSAIPIGAHIVSK
                     VQALRASQSNPGRTLRAARSVDALHAAFTR"
     gene            11833..13281
                     /gene="gabD"
                     /locus_tag="OQP62_002036"
     CDS             11833..13281
                     /gene="gabD"
                     /locus_tag="OQP62_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HCS1721595.1"
                     /translation="MQLNDSTLFRQQAFIDGDWRDARGGDVIPVSNPANGKPLGNVPK
                     MGAEETRDAINAANRALPAWRALTAKERANILRRWFNLMMEHQDDLARLMTLEQGKPL
                     AEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQTDKRLLVIKQPIGVTAAITPWNFPS
                     AMITRKAGPALAAGCTMVLKPASQTPFSALALAELAQRAGILAGVFNVVTGSAGDIGG
                     ELTSNPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEG
                     ALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLNQAVNKLAVGDGLQADVAIGPLIDE
                     KAVAKVQEHIADALEKGARVITGGEAHKLGGNFFQPTILADVPDNAKVAKEETFGPLA
                     PLFRFSDEADVIRQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVA
                     PFGGIKASGLGREGSKYGIEDYLEIKYMCIGL"
     gene            13296..14579
                     /gene="gabT"
                     /locus_tag="OQP62_002037"
     CDS             13296..14579
                     /gene="gabT"
                     /locus_tag="OQP62_002037"
                     /EC_number="2.6.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate--2-oxoglutarate transaminase"
                     /protein_id="HCS1721596.1"
                     /translation="MNTNNTLMQRCHNAVPRGVGQIHPIFAERAENCRVWDVEGREYL
                     DFAGGIAVLNTGHLHPGIVSAVEAQLKKLSHTCFQVLAYEPYLALCERMNQKVPGDFA
                     KKTLLVTTGSEAVENAVKIARAATKRSGAIAFSGAYHGRTHYTLSLTGKVHPYSAGMG
                     LMPGHVYRALYPCPLHNISDDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAAS
                     PAFMQRLRALCDQHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPL
                     AGVTGRADVMDAIAPGGLGGTYAGNPIACVAALAVLDIFEQENLLQKANTLGKTLRDG
                     LMEIAETHREIGDVRGLGAMIAIELFENGDPGKPNATLTADIVARAREKGLILLSCGP
                     YYNILRILVPLTIEASQIRQGLEIIAQCFDEAKQA"
     gene            14709..16109
                     /gene="gabP"
                     /locus_tag="OQP62_002038"
     CDS             14709..16109
                     /gene="gabP"
                     /locus_tag="OQP62_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GABA permease"
                     /protein_id="HCS1721597.1"
                     /translation="MGQLSESHALGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAG
                     PAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGPWAGYTIGWLYWWFW
                     VLVIPLEANIAAIILNSWIPGIPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALSKV
                     IAILAFIALGAAAISGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAE
                     IVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKSVGSYRSV
                     LELLHIPHAKFIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGKTNRSKTP
                     WVAVLLSTGAAFLTVIVNYYAPAKVFKFLIDSSGAIALLVYLVIAISQLRMRKILLAQ
                     GGEIKLKMWLYPWLTWLVIGFICFVLVVMLFRPAQQLEVISTGLLGLGIIGTVPIMSR
                     WKKLIRWQKAPLQNLR"
     gene            16151..16828
                     /gene="csiR"
                     /locus_tag="OQP62_002039"
     CDS             16151..16828
                     /gene="csiR"
                     /locus_tag="OQP62_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CsiR"
                     /protein_id="HCS1721598.1"
                     /translation="MTALSQPTAIDGYRWLKNDIIRGTYQPDEKLRMSLLTARYALGV
                     GPLREALSQLVAERLVTVVNQKGYRVASMSEAELLDIFDARANMEAMLVRLAIERGDD
                     AWEAEILARAHMLSKLEASDASEHMLDEWDQRHQAFHSAIVAGCGSHYLLQMRERLFD
                     LAARYRFIWLRETVLSVEMLEDKHIQHHTLTEAILAREAARASELMRQHLLTPIPIIR
                     QAMAGKM"
     gene            complement(16850..17299)
                     /gene="lysM"
                     /locus_tag="OQP62_002040"
                     /pseudo
     CDS             complement(16850..17299)
                     /gene="lysM"
                     /locus_tag="OQP62_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461721.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein LysM"
     gene            complement(17399..17557)
                     /locus_tag="OQP62_002041"
     CDS             complement(17399..17557)
                     /locus_tag="OQP62_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaE/Pmp3 family membrane protein"
                     /protein_id="HCS1721599.1"
                     /translation="MGFWRIVFTIILPPLGVLLGKGFGWAFILNILLTLLGYIPGLIH
                     AFWVQMRH"
BASE COUNT         4271 a         4670 c         4512 g         4177 t
ORIGIN      
        1 atttagagta taaacattat ttaaaataat aaacacggca ttcgttttaa tactacgttc
       61 aggactcatc ccactcatta gcagaaaatc tattaaaaag cgcgttcagg cgttttattg
      121 ctgccattga taaactgttt aacaacgtcg tctgtacagg ccttcttcgt tgcctttacg
      181 tttaactcaa tcaggctacc gtctcggtta taagtctatc gagtagtagg gacgtagtat
      241 gacgatgcag caaagtgata tggaaagata taatccatta ttaatgttaa aagaagtcat
      301 ggcgcagacg ccttatcgcc ataaacgctg gggagagcgt aagtttcgct ataaatttgt
      361 attacgttgc cttattaacc ccgtaacgac aattaaatac ttcaatgaat tatgccatct
      421 gtctcagccc agaacgctga ttattcatcg tccactgttg ccggcaaaaa tccagcggcc
      481 ctatttgtat accggactta gcatacgttg ccgggcaaag gctattctgg aacactacca
      541 gttcgttcag tcctttccgg aaagtaaaat taaaaagatc cttctgtccg aggaacaaat
      601 cttactcgct cacctggaag gaaaaaacgg tgctctggta gatatctact gcggtccctg
      661 tggctatgac agagaaggtg aactgacatt aacgctgtgc ttcaatgata cgccgttggc
      721 acgtttatca ttttccttta tccgccatga agggaagcaa atagcgctgg ttgccgggtt
      781 acaggggccc agtaaacata tcggcccaca agtcatacgt aacgccacca aagattgtta
      841 cggtctcttt cctaaacgga tgctgtatga agcatttgcg acattgatgc aggcctgtaa
      901 tgtcgacgag atttacgcgg taagtgaaaa caaccatgtt tatcgtcaac tcaggtactt
      961 attccagaag aaaaaaactt ttgtggccag ctatagtgaa ttctgggagt cgctaaacgg
     1021 cgttaagaaa ggtgccttat atcatctgcc atcacaggtg atgcgtaaag cgcctgaaag
     1081 tatccccagc aaaaaacgcg cagagtatcg gaagcgctat catattctgg atacaataat
     1141 acaagaggtt aacagcctct cccggtagaa ctatttcata cgcggatgtg cagatcctgc
     1201 taccgttcag cggatctctt tgaaatctgt atcgctactg gatggttaaa tacagaatgg
     1261 cttgcgagtg aaaagcgcgg cattaaaccg tcgctttcat tcatgctatg atcaacatct
     1321 taatcttatt cccttcacca taacgtcatc gattagcatg ttaaccatta aatacaagct
     1381 aaacatttgt cacattttta tttggttgag caaaaaaata atacaaaata gaattttcag
     1441 taagctaagt caggagtttt agtgaaaata caagaagtta agcgtatatt aacccgctgg
     1501 cagccgtctt cctttaccct ataccgggag gtgtttacgc aatacggcgg tagtatcaat
     1561 atgcacccag atattgtgga ttattttatg aagcgccata actggcattt taaattcttc
     1621 cactataaag aagatgataa gattaaaggc gcctacttta tctgtaatga tcagaatatt
     1681 ggcatcctga cgcgcagaac cttcccgcta tcttcagatg agatacttat tccgatggcg
     1741 ccagatttac gctgcttctt gcccgatcgt actaaccgac tttcggcgtt gcatcagcca
     1801 caaatacgca atgccatatg gaaactcgcc agaaagaaac aaaattgtct ggtcaaagaa
     1861 acgttctctt ctaagtttga aaaaacacgc cgtaatgaat atcagcggtt tcttaaaaaa
     1921 ggcggaagtg taaaaagcgt tgctgattgt tcttctgatg aactgactca tatttttatc
     1981 gagttatttc ggtctcgttt cggcaatact tcatcctgct atcccgctga taaccttgcc
     2041 aactttttta gtcaactgca tcaccttctg tttgggcata ttctttatat tgaagggata
     2101 ccctgtgcat ttgatatcgt actgaaatct gaaagccaga tgaacgtcta ctttgacgta
     2161 tctaatggtg caattaaaaa tgaatgcagg ccactcagtc ccggcagcat actaatgtgg
     2221 ctaaatatta gccgtgccag acattactgc caggaaagac aaaaaaaatt gcttttctcc
     2281 atcggcatac taaagcctga atgggaatat aagcgcatgt ggtcgacccc ctattttacc
     2341 gggaaatcga tttgctaaaa agaaagcctg gacgtaaata tgttttttac gcccaggttt
     2401 ttcataaacc ctgataaaat gataaaaaac gaaaatttaa tcagaattta aaaaataagt
     2461 taaccaccat ataatcataa tgacaattac tcgaaattca cttacactat gctcggtttt
     2521 atggaattga ttaacacggt atgttacaga taacgtgcta aaaagcgtgc agcggttata
     2581 cattttcata tgtgtgtgtc attaacctgg cgtcaggaac agatgatgat gacaactacc
     2641 attttatctc ttctggcctg gcataccgtc agtagattaa aggtgtagcc ttgctttatg
     2701 gcattacaaa aatgtgggtg aggtctatgc tcaatgtata cgttatttgt aacaacgctc
     2761 ttgtgcataa acaatacgtt attgccaaca gcactgaacg ggtacagtgg ttcttgctga
     2821 caacaggctt aaagatcgtc ttaacacggg atacctgata actggattat attatgacac
     2881 atgcagactg gctgattctt gggtatacaa ctgttattat tatttttggt attgtatgtt
     2941 atatcggatt gcttaaattg ataacgaaag gcaagcatga aaaataacgc acttaccggg
     3001 aagaatatac tctcaggaga taaaatgctt cggcaatgat atgacaccac tgccgaaatg
     3061 ctatttttac agaaatcaat caggtattga gggtgatttt atcatagccg cgccagcgat
     3121 aattcaacaa cgagagcagc cagaatagca caaaagcacc cactacccag aagcccacat
     3181 tccccatatg atcgttaagc gtgctgacgg tctgccaaaa tgttccgctt aactgtaacg
     3241 catcatcaat caaccccagc gcttcaagcc cgccaatcgc cagcgcgaca atgacggatg
     3301 cggcggtaat ggttatatta taataaagct tacgtaatgg atgcgagaaa gcccaaccgt
     3361 aagcgccgac catgacaaag ttatccaggg aatctaccag cgccatcccg gcggtaaaca
     3421 gcacaggaaa aatcatcatt gaccagagag atagcccctg gttagctgct gaagcggaaa
     3481 tgcccagcaa cccaacctcg gttgcggtat caaatcccaa gccaaacaga aaaccgacaa
     3541 aatacatatg ccaactggaa gtgaccaaac gaaacgtacg ctgaaatata cgcgtcatca
     3601 gcccgccagg tatcgcctcg tcatgcgccc ccactgactc gccgcgggta accgagcgaa
     3661 attgccgcca gacgttgaac aaaataaaca ggttgagcag ggccatcgcc agcagaaaaa
     3721 aagcggaaac agccgtacca atcaacgaac catattgatg caaaacatca atacgatcgc
     3781 gaaatgccat cgacgtcaca acaatcgcca gacatgccag aacgacaatg gtcgaatgac
     3841 ccaatgaaaa aaacgccccc acgcctaaag gcgttttacc ctgctgcatc agtttacggg
     3901 tgacggtatc gatggctgcg atatgatcgg catcaaccgc atgacgcagc ccaaagctat
     3961 acgccagtat ggctgcgctt agcatgactg catggtgatg aaaaacacag aacgcccaaa
     4021 tctaggccag gatgttaacc ccgacaagaa agacggttaa tgctattccc cgtcgtttag
     4081 tatgattatt catgcccctg cacccactat agttttaatt aacgctacgg tttgtagggg
     4141 gaatgtatga tcatttgatt aaaacgtcac acctcaagat gcgacttttt gtaaacgtgc
     4201 tttaccgctg acacatttgt gcgcattact gcgggacaag gcttaaaaag cgtatccgaa
     4261 cgtataaccc tcccaacgct tcgctacggg aaaaatgggg atgagtacgg tgcaagcgtg
     4321 cgatatcatt gaccaaagcc agaccaatgc ccgccccggc cacatttcct acgttatcga
     4381 gccggtggaa cggctgtagc gccagatgga tgtgttcatt atcaatgccg gggccgctat
     4441 cttcgacaac cagcgtcacg gcatcgccat cccgttcaag ccgcgcggtg acaatgcctt
     4501 gctcaggcgt gtatttcagc gcattatcca gcaagtttcc gcacagctcg ctaagcagta
     4561 cctcatcccc ctcgatccac atcgcttcct gttcgccttc gtagcccagg tcgatatgtt
     4621 tactgcgcgc ctgcgccagg cgggtaaagc agccgctctg tacgatatcg tacagattca
     4681 ccggggaaaa acgcctctcg ccctgctctt tatgctttac cgcagaaagt tgcaacaatc
     4741 tttccgtgag ctgaatggtg ctatccagcg ttacgctcat cgcctgcaga ctttcgtacc
     4801 agtgatgagg gtgctggctg gctaacgcca ccgccgcctg cgtttttaac accgccagcg
     4861 gcgtttttaa ctggtgagaa gcatcggcgc taaagcgttc ctgccgggaa aggatgccgc
     4921 ggagcctgtc aatgtagcga ttaaacgcca cgattaacaa gcgtgtttcc gaccacggca
     4981 gcagttccgg cagcggcgtt aacagacccg gttcgcggcg taccattaat gacgaaagtt
     5041 gacgcatagg gcgcaggatc cggcgtaata accagccaac cagcaccagg gtcagcaaca
     5101 ccagcagccc ctgtgagatc caggaagaga acagcagttg gcccgccaga taacgacggg
     5161 actgcagcgt ttctgcgaca taaacctccg ccatgccgat aatgccgcct tcgttgaccg
     5221 gctgtagcaa acgcgctacg cggatcgcct cgccgcgata ctcggtatga tagaaccacg
     5281 ccagcgccgg ataaagccgg gtacggggcg tagcgggcgg catggcaggc agatcgtcat
     5341 aaccggaaat gaccttcccg gaagggtcga cgactttgta atagagtcga tcattcatat
     5401 taagctcgaa gctatccagc accacccagg gcacgttaac ttccagatgg ttattgcgca
     5461 ccaccagccg ttccgatacc gttcgcgccg aggagagcaa cgtacgatca taagcctgag
     5521 tggcggcctg tagcgcattg acataactgt taaacgccga cagcccccat agcagaatca
     5581 gcggcaaccc caggaacagt aagagttgca ggtacaacga ttgcggctta acccacttca
     5641 tcgccgcgct ccagcacata acccaggccg cgcagcgtcg taattcgtac atcgcttccc
     5701 tgaagttttt tacgcagtcg atgaatataa agttcgatgc tttcagggct tacctcatcg
     5761 ttcaggctga acacctgttc aaaaagctgc tgacgcgaga caggccgcgt tcgtcggtac
     5821 atcaatacgg ttaagagcgc ctgctcacgc ggcgtcagcg ctaacggctg tccctgtaac
     5881 agaaaatacc cttcatcatg aaagatcaat tcacccagtt gctgaacttc atgaaccagc
     5941 ccagcgctgc gtcggagcaa ggcccgtaaa cgggcatcca gctcttccag ttcaaagggt
     6001 ttcggcagat agtcatccgc gccgacgttg agacctttta cgcgatccgc caccgcgctt
     6061 cgcgccgtga gcagcaaaac gggcaaggtc tgaccgcgtt tacgcagccg ttgcaccacc
     6121 tccagtccat ccattcccgg catattgata tccagcacca tcagcgcata catttcactg
     6181 tgcagaagat ggtcagccgc caggccgtca aatacgcagt ccacggcaaa gccgttttgc
     6241 accagcgctt tctccagcca gtgagccagc tcacggttat cttccgccaa taagagacgc
     6301 atatcacatc ctgtaaagtt tctgccgcat tgaaagggaa ttgaaaggtt attgttttaa
     6361 caatcacgca accgaactgc tacatgtcgg ctcacataat cacaaaaatc ttcttccgaa
     6421 cctgaaaaat ccggacgtcc ggcgtgagga taaaaaatga aaaaacaatt acttcgtacc
     6481 cttactgcaa gcattttatt aatgagtacc tctgttctgg cacaggaggc gccgtcgcga
     6541 acggaatgta tcgcgccagc caaacctggc ggcggttcgc tgctcaacct gtcgcagggg
     6601 aaatttggtc gctacggcgt ggatgatgtg cgctggctgg caagcgtggg cactgattac
     6661 ggcatgatcg ccgtgcgtgc ggattccccg tggaagacgc tgaaagatct gatgacggcg
     6721 atggaaaaag atcccaacag cgtggtcatc ggcgctggcg cctctattgg cagccaggac
     6781 tggatgaagt cggcgttgct ggcgcaaaag gcgaacgtcg atccgcacaa gatgcgctac
     6841 gttgcctttg agggcggcgg cgagccggtg acggcattaa tgggcaacca tgttcaggtt
     6901 gtctccggcg atctcagtga aatggtgcct tatctgggcg gcgacaaaat ccgcgtcctt
     6961 gccgtctttt cagaaaatcg tctgctgggc cagcttgcca atgtccctac cgctaaagaa
     7021 cagggctacg acctagtgtg gccgattatt cgcggcttct atgtcgggcc caaagtcagc
     7081 gatgccgatt accagtggtg ggtggatacc ttcaagaagc tccagcaaac cgacgagttt
     7141 aaaaagcagc gcgatctgcg cggcctgttt gagttcgaca tgaccggcca gcagctcgat
     7201 gactacgtga aaaaacaggt tactgattac cgtgaacagg cgaaagcctt cggactcgcg
     7261 aaataatcgc ggaggcaatg atgagcgatc gtatctttgc gggtatctgg ctgttgctct
     7321 gtatcgccgg gctattcatc gcctggcaga tccaaagcga atacagctat gaacccgtcg
     7381 gcccccgccc ttttccgctg gggattatcg gcctgatggc gctctgcgcg ctggcgctgt
     7441 tattgcgcca tcccgacacg gtgagctggc cgcgccgcca tgttctgcaa aagctaatta
     7501 ccatgatcat catcctgttg atgtatgcct ggggattcga atggctgggt tttcccatcg
     7561 ccaccgcgct tctcaccatg gttatcggga tgctgttcgg cgccacgatt ccggcggcgg
     7621 gtatctccgg cgcggtatta ggcattctgc tgtggtatgc ctttgaccgg ctgcttgatg
     7681 tcaccttacc tctcggcgcc tggctgagtt aacggagcaa cgatggatac ctggatatgt
     7741 ctttctcagg gctttgcggt ggcaatgacg ccggaaaacc tggttatcgc gttgattggc
     7801 tgcttcgtgg gcacgatcgt cggtctgctg ccgggcctgg gaccgatcaa cggcgtggca
     7861 atcttactgc cgctggcctt tgcgttgcat ctgcctgcgg agtcggcgct aattctgctg
     7921 gcgacggtgt acattggctg tgagtatggc ggcaggatct cctccatatt gctcaacgtc
     7981 cccggcgatg cggcggcgat catgacggcg ctggacggtt acccaatggc gcagcaaggg
     8041 aaaggcggcg tagcgctgtc gatttccgca gtcagctcat ttttcggttc attaatcgct
     8101 atcggcggca tcattctgtt cgccccttta ctggcgcaat ggtcgctggc cttcggtccg
     8161 gcggaatatt tcgccttaat ggtttttgct atcgcctgtc ttggcagcat gatggcgcaa
     8221 aacccgctta aatcatttct ggcagctctg atcggtcttg gccttgcgac cgtcggcgtg
     8281 gacgccaaca ccggggttta tcgctttacc tttgacagcg ttcatctttc cgacggcgta
     8341 cagtttatcg tcgtggtgat cggcctgttc tcggtatcag aaatactttt aatgctggaa
     8401 cataccagca gcgggcaaac aatggtccgc aaaacgggtc gaatgttgtt caacctgaaa
     8461 gaaggcgcgc agtgtatcgg caccaccctg cgttcttcgg taatcggctt ttttgtcggc
     8521 gtattgcccg gcgccggggc gaccattgcc agcgccatta cctatatgac cgagaaaaaa
     8581 ctcagcggca acagcgatag cttcggcaaa ggggatattc gcggcgtcgc ggcgccggag
     8641 gcggcaaaca acgcctctgc ctgcggctcc ttcatcccga tgctgacgct gggcgttccc
     8701 ggttccggca ctacggcagt gatgatgggg gcgctgacgc tgtataacat cacgccaggc
     8761 ccggcgatgt tcaccgaaca gccggatatc gtctggggac tcatcgctgc gctgctgatt
     8821 gcgaacgtga tgctgctgat catgaatatc ccgttgatcg gtctgttcac ccgtatgctc
     8881 accattccgc tgtggttcct ggtacccgcc atcgctgccg tatcggcggt aggggtatat
     8941 gcggtacaca gccccacctt cgatctggtg ctgatggtcg cgcttggcgt gttagggtac
     9001 attttacgta aaatgcactt ccccatgtcg ccgctgatcc tgggatgcgt actgggggaa
     9061 atgctggagc agaacctgcg tcgcgcactc tccatcagta acggcaatat ggcgattttg
     9121 tggcaaagcg gcgttgccaa agccctgctg atcatggcga tcatagtcat tgtcgtaccg
     9181 ccagtgttac gtctgatccg taaacacagc cgtaaaccgc aggttgacgc cagttaattg
     9241 actgctgaaa tacgttgtac ttgtccggcc tacgcgctca tgtgccaggc cgggcaaccc
     9301 cgccagcatc actctttcca taactcgctc attttacacc ccttcttgcc gttgtcaggc
     9361 tcgtggcgcc gttaacctca cctttcgcat tgttaaatat ttgttgtttt tgatcacaat
     9421 aattaaacaa aagcggttat ttcatacgcg ttcctggaaa atgtcgatat ttttaattta
     9481 tggctacgaa atgagcatcg ccatgtctcc ctgaccatct accgagagga atgattctga
     9541 tgaatgcact gactgccgta aaagcgaaca cagatgattt agcccaacgc catactggtt
     9601 tcatccttgc cccttcggcg cagtcgccgc gcctgctggc gttaacgttt acggcggata
     9661 ccacaagaca atttctccat caggttgcgc agtggccggt gcaggcgctg gaatacaaat
     9721 ctttcttacg tttcaaaatc ggcaagatcc tcgacgatct gtgcggcaat cagctacaac
     9781 cgctgttgat caaaacgctc ctcaaccgtg cacaaggcgc gctgttgatc agcgccgaag
     9841 ggatcgatga tgtcgcacag gcagaagaga tggtcaaact ggcgacggcg gtggcgcatc
     9901 ttattggtcg ctccaactac gatgcgatga gcggccagta ttacgcgcgt ttcgtggtca
     9961 aaaacgtcga caactccgac agttatctgc gccagcccca ccgcgtaatg gaactgcaca
    10021 atgacggtac ctatgttgag gaggtgaccg actacgtgct gatgatgaaa atcgacgaac
    10081 aaaatatgga aggcggtaat tcgctgctgc tgcaccttga tgactgggaa catctggagt
    10141 cgttttttac ccatccgctg gcgcgtcgcg tcatgcgctg ggcggcgccg ccaagcaaga
    10201 atgttagcca tgacgtctgg cacccggtgt ttgatgtcga ccaacaaggc cgcccggtca
    10261 tgcgttatat cgaccagttc gtccagccaa aagactttga agaaggcgtc tggctcagcg
    10321 agctttcaga cgcgctggaa accagtcaaa acatcctctc cgtgccggta ccggtcggca
    10381 aattcctgct gattaacaat ctgttctggc tacatggacg cgatcgtttt acgccgcatc
    10441 ctgacttgcg tcgcgagctg atgcgccagc gcggttactt cgcctacgcc gccagccatt
    10501 atcaaactca ccaataagcg ccacggcgaa ggaattacgc ggatgtatga ttttgtgatt
    10561 atcggcggcg gcattatcgg catgtcgacc gccatgcaac ttattgatgt ctacccggat
    10621 gcgcgcatcg cgttgctgga aaaagagtcc gcgccagcct gccaccagac cgggcataac
    10681 agcggcgtga tccatgccgg ggtgtactac acgcccggca gcctcaaagc gcggttttgt
    10741 ctggcgggca atcaggcgac caaaaccttt tgcgatcaaa acaacatccg ctacgacacc
    10801 tgcggcaaaa tgttggtcgc cacctcggag ctggaaatgg cgcggatgcg cgcgctatgg
    10861 gagcggacgg cggccaacgg cttagagcgc gagtggttaa acgcggcgga gctgcgtgaa
    10921 cgcgaaccca atatcattgg cctgggcggg atttttgtcc cttccagcgg gattgtcagc
    10981 tatcgcgatg tcgcgacggc catggcgaac cgctttcagg ccaaaggcgg cgagatcatc
    11041 taccatgccg aggtcagcgc gctaacagaa catgccgctg gcgttatcat tcgcacttcg
    11101 caaggccgag aaatcgaaac cgctacgctt atcggctgtg cagggctgat ggcggatcgg
    11161 ctggtcaaaa tgctgggcgt ggagcccggt tttattatct gccctttccg cggcgagtac
    11221 tttcgtctgg ccccgcgaca caaccggatc gttaaccatt tgatctaccc gatccccgat
    11281 ccggcaatgc cgtttctcgg cgtccacctt acccgcatga tcgacggcag cgtcacggtc
    11341 gggccgaatg cggtgctggc gcttaaacgc gaaggctacc gtaagcgcga cgtttccttc
    11401 accgacaccc tggagatttt ccgctccgcc ggcattcgcc gcgtactgca aaaccatctg
    11461 ctttccggac tgggcgagat gaaaaactcg ctgtgcaaaa gcggctattt gcggcgagta
    11521 caaaagtatt gccccagcct gaccgtcaac gatctccagc cctggccggc aggcgtgcgg
    11581 gcgcaggcgg tttcgccgga cggcaaactg attgatgatt ttctgtttgt cacgacgccg
    11641 cgttccattc acacctgtaa cgcaccctcc ccggcggcga catcagcgat acctatcggc
    11701 gcgcatatcg tcagtaaagt tcaggcgcta cgcgcaagcc agagcaaccc cggacgtacg
    11761 ctgcgtgcgg cacgcagcgt ggacgcatta cacgccgcat ttacccgtta acccttcaga
    11821 caggaagcaa ttatgcaact taacgactct accctgttcc gccagcaggc ctttatcgat
    11881 ggcgactggc gcgacgcgcg cggcggcgat gtcatccccg tgagcaaccc cgccaacggg
    11941 aaaccgcttg gcaatgtgcc caaaatgggg gcggaagaga cgcgcgacgc catcaacgcc
    12001 gccaatcgcg ccctgcccgc ctggcgcgcg ctcaccgcca aagagcgagc caatatcctg
    12061 cgtcgctggt tcaatctgat gatggaacat caggacgatt tggcgcgtct gatgacgctg
    12121 gaacagggca aaccgctggc ggaagcgaaa ggcgaaatta gctacgccgc ctcgtttatt
    12181 gaatggttcg ccgaagaggg gaagcgtatc tatggcgaca cgattccagg tcatcagacc
    12241 gataaacggc tgctggtgat taaacagccc atcggcgtca ccgccgcgat taccccgtgg
    12301 aactttccct cggcaatgat cacccgtaaa gccggccccg cgctggccgc aggctgcaca
    12361 atggtactca aacccgccag ccagacgccg ttttccgcgc tggcgctggc ggaactggcc
    12421 cagcgcgccg gaattctcgc aggcgtattt aacgtcgtta ccggttcggc aggcgatatc
    12481 ggcggcgagc tgaccagcaa cccgctggta cgcaaactgt cgtttaccgg ctcgacggag
    12541 attggccgcc agctaatgga acaatgcgcc aaagacatta aaaaagtatc gctggagttg
    12601 ggcggcaatg cgccgtttat cgtctttgac gatgccgatc tggataaagc cgtcgagggc
    12661 gcgctggctt cgaagtttcg caacgccggg cagacctgtg tctgcgccaa tagattgtat
    12721 gttcaggacg gcgtttacga tcgttttgcg gaaaaactca accaggcggt aaataagctc
    12781 gcggtcggcg acggcctgca agccgacgtc gctatcgggc cgctgattga tgaaaaagcc
    12841 gtggctaaag tccaggagca tatcgccgac gcgctggaaa aaggcgcccg cgtaattacg
    12901 ggcggtgaag cgcacaaatt aggcggcaac ttctttcaac cgaccattct ggcggatgtt
    12961 cctgataacg cgaaagtcgc caaagaagag acattcgggc cgctcgcgcc tctgttccgc
    13021 ttcagcgacg aggcggatgt catcaggcag gctaacgata ccgagttcgg cctggcagcc
    13081 tatttttatg cacgcgattt aagccgcgtt ttccgcgtcg gcgaagcgct ggaatacggc
    13141 atcgtcggta ttaataccgg cattatctcc aacgaagtcg cgcctttcgg cggtattaag
    13201 gcctccggat taggccgtga aggttccaaa tacggcatcg aagattattt agaaatcaaa
    13261 tatatgtgca tcggccttta acaggagagt cgctaatgaa taccaataac actttaatgc
    13321 agcgctgtca taacgccgtt cctcgcggcg tgggccagat tcacccgatt ttcgccgagc
    13381 gggcggaaaa ttgtcgggtc tgggatgtcg aaggccgtga gtatctcgat ttcgcgggcg
    13441 gcattgccgt cctgaacacc ggtcatttac atccgggcat tgtttcagcg gtcgaagcgc
    13501 agttgaagaa attgtcgcat acctgttttc aggtgctggc ctatgaaccg tacctggcgc
    13561 tgtgcgaacg catgaaccag aaggtaccgg gcgatttcgc caaaaaaacg ttgctggtca
    13621 cgaccggttc agaagcagtt gaaaacgcgg tgaaaatcgc ccgcgcggcg acaaaacgca
    13681 gcggcgctat cgcgtttagc ggcgcttacc acggtcgtac ccactacacg ctctctctga
    13741 ccgggaaagt acacccgtac tctgcgggta tgggattgat gccaggccat gtctaccgcg
    13801 cgctttatcc ttgcccgcta cacaacatca gcgacgacga cgcgatcgcc agcattgaac
    13861 gcatctttaa aaatgatgcc gcgccggaag atatcgccgc cattattatt gagccggtac
    13921 agggcgaagg cggattttac gccgcctctc ccgcgtttat gcagcgactg cgcgcgctat
    13981 gcgaccaaca cggcattatg ttgattgccg acgaagtgca aagcggcgcg ggccggaccg
    14041 gtacgctgtt cgccatggaa cagatgggcg ttgcggcaga tattaccacg tttgcgaaat
    14101 cgatcgccgg cggctttccg ctggcaggcg ttaccggccg ggcagacgtg atggacgcta
    14161 tcgcgccggg cggtctgggc ggcacctatg ccggaaaccc gattgcctgc gtcgccgcgc
    14221 tggcggtact ggacattttc gagcaggaaa atctactgca aaaggcgaat acgcttggca
    14281 aaacgctgcg cgatggcctg atggagatag cggaaacgca ccgtgagatt ggcgacgtgc
    14341 gcggactggg cgccatgatc gccattgagt tgttcgaaaa tggcgacccc ggcaaaccga
    14401 acgcgactct gaccgccgac attgtggccc gcgcccgcga gaaagggtta attctgctct
    14461 cctgcggtcc ttactacaac atcttgcgca tcctcgttcc actcactatt gaggcctcgc
    14521 agattcggca aggcctggag attatcgccc agtgctttga tgaggcgaaa caagcgtaat
    14581 gtccaataag cagcgtcgga tggcgacgta actgtcttat ccggcctaca aaaaccgttt
    14641 cgattgtagg ccgaataagc caggcaccat ccggtaaacg agcgcaataa caataaagag
    14701 gttttaggat ggggcaattg tcagaatcac atgcattagg gggcgggctg aaatcacgcc
    14761 acgtcaccat gttatcgatc gccggcgtca tcggcgccag cctgtttgtc ggttccagcg
    14821 tggcgattgc ggaggccggc cctgcggtac tgctggccta tctgttcgca ggacttttag
    14881 tcgtcatgat tatgcgaatg ctggctgaaa tggccgtcgc cacaccggat accggttctt
    14941 tttccaccta tgcggataaa gcgatcggcc cctgggccgg gtataccatc ggctggttat
    15001 actggtggtt ttgggtgctg gttattccgc tggaggccaa tattgccgcc attattctga
    15061 attcatggat accgggtatt ccggtgtggc tattttcatt agtgattacg cttgccttaa
    15121 ccggaagcaa tttattgagc gtcaaaaatt acggtgaatt cgaattctgg ctggcgctat
    15181 ctaaagtaat tgccattctg gcgtttatcg cgctgggcgc ggcggcgatt agcggttttt
    15241 atccgtatgc cgaggtaagc ggtatttccc ggctctggga tcacggcggt tttatgccta
    15301 acggcttcgg tgcggtgtta agcgccatgt tgatcaccat gttctctttt atgggcgcgg
    15361 aaatcgtcac tattgctgcc gcggaatccg atacgccgga taaacatatc gtacgcgcca
    15421 ccaattctgt tatctggcga atttccatct tttacctgtg ttccattttt gtggtagtgg
    15481 cgctgatccc gtggaatatg ccgggtctga aaagcgtagg ttcgtaccgt tcggtactgg
    15541 agctgcttca tattccgcac gcaaaattca ttatggactg cgtgatttta ttgtcggtga
    15601 ccagttgtct gaactccgca ttatataccg cctcccggat gctctattcc cttagccgcc
    15661 gcggcgatgc gcctgcgata atgggaaaaa ctaaccgtag caaaacgccc tgggtggcgg
    15721 ttctcctctc taccggcgcg gcctttttaa ccgttatcgt caattattac gccccggcaa
    15781 aagtgtttaa atttcttatc gacagttccg gcgccatcgc gctgctggtc tatctggtga
    15841 ttgcgatttc gcaattgcgg atgcgtaaaa ttctgctggc gcagggcgga gaaattaagt
    15901 tgaaaatgtg gctttatccg tggctcacct ggctggttat cggctttatc tgctttgttc
    15961 tggtggtgat gctatttcga ccggcacagc aactagaagt catttcaacg gggctgttag
    16021 ggctgggcat aataggtact gtccccatta tgtctcgctg gaaaaaactg ataaggtggc
    16081 aaaaagcccc cctgcaaaac ctacgttagt tattcccggc gtcagccggg aagcttctca
    16141 ggagtaaaag atgaccgccc tttcccaacc gacggccata gatggctatc gctggcttaa
    16201 aaatgacatt attcgcggca cttatcagcc ggatgagaaa ctgcggatga gtttattaac
    16261 cgcccgctat gcgctcggcg tagggccgct gcgcgaggcg ctgtcacaac tggtggcgga
    16321 acggctggtc accgtggtga atcaaaaagg ctatcgcgtg gcatccatgt cagaggcgga
    16381 actcctcgat atttttgacg cgcgcgccaa tatggaagcg atgctggtgc gcctggcgat
    16441 tgaacgcggc gatgatgcgt gggaggcgga gatcctggcg cgagcgcata tgctcagtaa
    16501 actggaagcc agcgatgcca gtgaacatat gctcgatgaa tgggatcagc gccaccaggc
    16561 gtttcattcc gccattgtcg ccgggtgcgg ctcccactat ctgctacaga tgcgcgaacg
    16621 cttatttgac ctggcggccc gctaccgctt tatttggtta cgtgaaaccg ttctgtccgt
    16681 cgagatgctg gaagataaac atatccagca tcacacgcta accgaagcga tactggcgcg
    16741 cgaggcggca cgcgccagcg aattaatgcg tcagcatttg ctgacgccga ttcccattat
    16801 tcgccaggcg atggcaggaa aaatgtagcc aggcacggcc tgatagccat tattcttcag
    16861 gaatacgcaa cacttgtccc ggatatattt tttccgggct tttcagcatc ggtttatttg
    16921 cctcgaagat tttattatac agattggcgt taccatacac ttgctttgaa atagcgctca
    16981 gggtgtcgcc tgattttacg gtataaaact gactttcagc cgctggcgtc gtggttttaa
    17041 cctgatcgtc aacgctgcta atcccggcga tattccccac ggcaaccaga attttttctt
    17101 ttgcctcctg actcagccca tcacccgtca ctgtcgcttt tccatcagca atttgcacat
    17161 tcactttgtc agcgtcgggt attcccgttt tatttaaatg ttcctagact tttttcgcct
    17221 gatcgtcctt atcatgatta gcggttaccg cgtcccagag tttttcacct gcatctttta
    17281 caaaattgaa aagtcccata ttcacctcgc ttgtcaaaaa tacacacaaa gaaaagtgta
    17341 gcagagggaa tgaggttatc ctgataagcg gcgcttatgc gccgccggtg gccggtaatt
    17401 aatgacgcat ctgaacccaa aatgcatgga taagccccgg aatatatccg agtaatgtca
    17461 gcaggatatt aaggataaat gcccaaccga acccttttcc taaaagtacg ccgagcggag
    17521 gcaaaataat cgtaaataca attctccaga aacccatata cactccatac aagcaaaatt
    17581 agtcattgtt taaaaagaga ttttatctct aagcatagtc agtttacctg
//
LOCUS       DAJVSD010000074        17579 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.074, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000074 DAJVSD010000000
VERSION     DAJVSD010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 17579)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17579)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17579
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.074"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(42..1361)
                     /gene="brnQ"
                     /locus_tag="OQP62_002042"
     CDS             complement(42..1361)
                     /gene="brnQ"
                     /locus_tag="OQP62_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transporter carrier
                     protein BrnQ"
                     /protein_id="HCS1721600.1"
                     /translation="MTHQLKSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTA
                     AIGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGLLLATVCYLAVGPLFATPRT
                     ATVSFEVGIAPLTGDSAMPLLIYSVVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALV
                     ILSVAAIVWPAGPISNALDAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGV
                     TEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSATLVDQSANGAAILHAYVQHTFG
                     GAGSFLLAALIFIACLVTAVGLTCACAEFFAQYIPLSYRTLVFILGGFSMVVSNLGLS
                     HLIQISIPVLTAIYPPCIALVVLSFTRSWWHNSTRIIAPAMFISLLFGILDGIKASAF
                     GDMLPAWSQRLPLAEQGLAWLMPTVVMVILAIIWDRAAGRQVTSSAH"
     gene            complement(1770..3065)
                     /gene="phoR"
                     /locus_tag="OQP62_002043"
     CDS             complement(1770..3065)
                     /gene="phoR"
                     /locus_tag="OQP62_002043"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HCS1721601.1"
                     /translation="MLERLSWKRLVLELVLCCIPALILSAFFGYLPWFLLAAVTGLLV
                     WHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRS
                     GAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPDDNGQNILNLLRYPEFTQYLKTRD
                     FTRPLHLVLNTGRHLEIRVMPYTDKQLLMVARDVTQMHQLEGARRNFFANVSHELRTP
                     LTVLQGYLEMMQEQALEGATREKALHTMREQTYRMEGLVKQLLTLSKIEVAPALLLNE
                     KVDVPMMLRVVEREAQTLSQQKHTFTFAVDDSLSVLGNEEQLRSAISNLVYNAVNHTP
                     AGTHITVSWRRAAHGAEFCIQDNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLA
                     IVKHALNHHESRLEIDSSPGKGTRFSFVLPERLIAKNSD"
     gene            complement(3135..3824)
                     /gene="phoB"
                     /locus_tag="OQP62_002044"
     CDS             complement(3135..3824)
                     /gene="phoB"
                     /locus_tag="OQP62_002044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000113934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate response regulator transcription
                     factor PhoB"
                     /protein_id="HCS1721602.1"
                     /translation="MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNE
                     PWPDLILLDWMLPGGSGLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDY
                     ITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEF
                     KLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEHSGHDRMVQTV
                     RGTGYRFSTRF"
     gene            4039..5241
                     /gene="sbcD"
                     /locus_tag="OQP62_002045"
     CDS             4039..5241
                     /gene="sbcD"
                     /locus_tag="OQP62_002045"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease subunit SbcD"
                     /protein_id="HCS1721603.1"
                     /translation="MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLETAQAHQVDAII
                     VAGDIFDTDSPPSYARELYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDILAFLNT
                     TVIASAGYAPRLLHRRDGSPGAVLCPIPFLRPRDIITSQAGLSGSEKQQQLLHAIADY
                     YQQQYQEACLLRGERKLPVIATGHLTTVGASKSDAVRDIYIGTLDAFPAQHFPPADYI
                     ALGHIHRAQCVGGTEHIRYCGSPIALSFDECGKSKCVHLVTFDQGKWQSTESLAVPVT
                     QLLAVLKGDLASITEQLEQWRGVEQSPPVWLDIEITTDDYLHDIQRRIQALTESLPVE
                     VLLVRRSREQRERSLANERRETLSELSVEEVFARRLALEALDTPQRERLNQLFSSTLY
                     ALNEEHEA"
     gene            5238..8379
                     /gene="sbcC"
                     /locus_tag="OQP62_002046"
                     /pseudo
     CDS             5238..8379
                     /gene="sbcC"
                     /locus_tag="OQP62_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459390.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease subunit SbcC"
     gene            8552..9724
                     /gene="araJ"
                     /locus_tag="OQP62_002047"
                     /pseudo
     CDS             8552..9724
                     /gene="araJ"
                     /locus_tag="OQP62_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459389.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter AraJ"
     gene            complement(9744..10652)
                     /gene="mak"
                     /locus_tag="OQP62_002048"
     CDS             complement(9744..10652)
                     /gene="mak"
                     /locus_tag="OQP62_002048"
                     /EC_number="2.7.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructokinase"
                     /protein_id="HCS1721604.1"
                     /translation="MRIGIDLGGTKTEVIALDDAGEQRFRHRLPTPREDYQQTIETIA
                     TLVDMAEQATGQTGSVGIGIPGSLSPYTGVVKNANSTWLNGQPFDSDVSRRLKREVRL
                     ANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVALNGRAHIGGNGTAGEWGHNPL
                     PWMDDDELRYREEIPCYCGKQGCIETFISGTGFATDYQRLSGKTLKGDEIIRLVDAQD
                     AVAELAISRYELRLAKALSHVVNILDPDVIVLGGGMSNVERLYKTVPSLMKSFVFGGE
                     CETPVRKARHGDSSGVRGAAWLWPLA"
     gene            10778..11689
                     /gene="rdgC"
                     /locus_tag="OQP62_002049"
     CDS             10778..11689
                     /gene="rdgC"
                     /locus_tag="OQP62_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HCS1721605.1"
                     /translation="MLWFKNLMVYRLSRDITLRAEEMEKQLASMTFTPCGSQDMAKMG
                     WVPPMGSHSDALTHTANGQIIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLKKT
                     EKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGS
                     LPVVPLALENPIELTLTEWVRSGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDE
                     IAVHIEAGKVVTKLALDWQQRIQFVMCDDGSIKRLKFCDELRDQNEDIDREDFAQRFD
                     ADFILMTGELAALIQSLVEGLGGEAQR"
     gene            complement(11727..12011)
                     /gene="ppnP"
                     /locus_tag="OQP62_002050"
     CDS             complement(11727..12011)
                     /gene="ppnP"
                     /locus_tag="OQP62_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine/purine nucleoside phosphorylase"
                     /protein_id="HCS1721606.1"
                     /translation="MLQSNEYFSGKVKSIGFTSSSTGRASVGVMAEGEYTFGTAEPEE
                     MTVVSGALKVLLPGTVEWKVYTAGEVFNVPGHSEFHLQVAEPTSYLCRYL"
     gene            complement(12082..12759)
                     /locus_tag="OQP62_002051"
     CDS             complement(12082..12759)
                     /locus_tag="OQP62_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AroM family protein"
                     /protein_id="HCS1721607.1"
                     /translation="MSASLAILTIGVVPMSEVLPLLTEYIDEQHITHHSLLGKMSRED
                     VMADYAVEPGDDLLLTLLNDNQIAHVSRQKVERDLQSVVEVLDNQGYDVIILMSTAAI
                     KSTAARNSILLEPLRIIPPLVASIVDGHQVGAIVPVAELLAAQEKKWQVLQMPPVYSL
                     ANPVHGSEQQLIDAGQALLDQGADVIMLDCLGFHQRHRDILQQALDVPVLLSNVLIAR
                     LASELLV"
     gene            complement(13010..13201)
                     /gene="yaiA"
                     /locus_tag="OQP62_002052"
     CDS             complement(13010..13201)
                     /gene="yaiA"
                     /locus_tag="OQP62_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YaiA"
                     /protein_id="HCS1721608.1"
                     /translation="MPTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPKPDSLISEH
                     PTAEEAMDAKKRYEDPDKS"
     gene            complement(13228..13773)
                     /gene="aroL"
                     /locus_tag="OQP62_002053"
     CDS             complement(13228..13773)
                     /gene="aroL"
                     /locus_tag="OQP62_002053"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroL"
                     /protein_id="HCS1721609.1"
                     /translation="MMQPLYLVGPRGCGKTTIGMALAQATGFRFADTDRWLQSHVQMS
                     VADIVEKEGWGGFRARETAALEAVSAPSTVVATGGGIILTEYNRRYMHRVGVVIYLCA
                     PVSTLVNRLEAEPEADLRPTLTGKPLSEEVREVLEQRDALYRETAHYIIDATKAPAQV
                     VSEIIAALPPSTQRLQGDVYT"
     gene            complement(13958..14413)
                     /locus_tag="OQP62_002054"
     CDS             complement(13958..14413)
                     /locus_tag="OQP62_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
                     /protein_id="HCS1721610.1"
                     /translation="MTIWVDADACPNVIKEILYRAAERMQLPLILVANQALRVPPSRF
                     IRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEVLEKGAAALNPRGERYSDATI
                     RERLTMRDFMDTLRASGVQTGGPNTLSPRDRQHFAAELDKWWLESQRKK"
     gene            14553..15362
                     /gene="proC"
                     /locus_tag="OQP62_002055"
     CDS             14553..15362
                     /gene="proC"
                     /locus_tag="OQP62_002055"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HCS1721611.1"
                     /translation="MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAA
                     LHDQYGINAAQSAQEVAQVADIVFGAVKPGIMVKVLSEISSSLNKDSLVVSIAAGVTL
                     DQLARALGHDRKIIRAMPNTPSLVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVI
                     AEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKIVLET
                     GKHPGELKDMVCSPGGTTIEAVRVLEERGFRAAVIEAMTKCMEKSEALSKS"
     gene            complement(15377..16489)
                     /gene="adrA"
                     /locus_tag="OQP62_002056"
                     /gene_synonym="dgcC"
     CDS             complement(15377..16489)
                     /gene="adrA"
                     /locus_tag="OQP62_002056"
                     /gene_synonym="dgcC"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase AdrA"
                     /protein_id="HCS1721612.1"
                     /translation="MFPKIMNDENFYRKAVEQAVAPPDPSDDRQRSGLRFARRIRLPR
                     AVGLGGMLLPVAAVLVSQPVFGGWWLLLVGWSFVWPHLAWQWAAKALDPLRQEIYNLK
                     VDAILSGMWIALMGVNMLPAAALFMMMSMNLMGAGGRRLFTVGMGLLLASCLVTLQLT
                     GLPVAMRSSSLEVTLSLPVIMLYPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVY
                     NRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTWGHDAGDEAIIALTRQLQI
                     TLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTLRLPGAPQVMLRISVGV
                     APLTPQIGHYREWLKSADMALYKAKNAGRNRTEVAA"
     gene            complement(16581..16901)
                     /gene="psiF"
                     /locus_tag="OQP62_002057"
     CDS             complement(16581..16901)
                     /gene="psiF"
                     /locus_tag="OQP62_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-inducible protein PsiF"
                     /protein_id="HCS1721613.1"
                     /translation="MKITLLVTLLFGLVFLTAVGATEKPLTPQQQRMTTCNQQATAQA
                     LKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACL
                     KKAA"
     gene            complement(17253..17513)
                     /gene="iraP"
                     /locus_tag="OQP62_002058"
     CDS             complement(17253..17513)
                     /gene="iraP"
                     /locus_tag="OQP62_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001748986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraP"
                     /protein_id="HCS1721614.1"
                     /translation="MKNLIAELLLKLAQKEEESKELVAQVEALEIIVTAMLRNMAQNE
                     QEMLIRQVEGALEGVKPDASVPDHDTELLRQYVKKLLRHPRH"
BASE COUNT         4232 a         4926 c         4570 g         3851 t
ORIGIN      
        1 cggggcgtta agccccgtgg tgtacacata tgtcagcgat tttagtgagc gctggaggtc
       61 acctgccgac ccgccgcgcg atcccagata atcgccagga tcaccatcac caccgttggc
      121 atcaaccacg ccagtccctg ttccgccagc ggcaaacgct gactccaggc tggcagcata
      181 tcgccaaagg cagatgcttt gatgccgtca aggataccaa aaagcaggct gataaacatg
      241 gccggcgcga tgatacgggt ggaattatgc caccatgagc gggtaaaact taatacaacc
      301 agtgcgatac acggcggata gatagccgtc agcaccggaa tggagatttg aatcagatgg
      361 ctcagtccga gatttgacac caccatagag aagccgccga gaataaagac cagcgtgcgg
      421 taagacagcg gaatatactg cgcgaaaaac tcagcgcagg cgcaggtcag ccccaccgcc
      481 gtcaccagac acgcgataaa gatcagcgcc gccagcagga agcttcccgc gccgccaaag
      541 gtatgctgaa cgtaggcatg aagaatcgcc gcgccgttcg ctgactgatc gaccagcgtc
      601 gcgctgtcag aacctaagcg aaacaaggca aggtaaagca gcgtcagccc cacgcccgcc
      661 atcaggccgg cccagaccgt gtaacgcgtc aacaggcgcg cttcggtcac gccgcgagaa
      721 cgcgccgcgt tcacaataac gataccaaac accatcgcgc ccagcgtatc catcgtcaga
      781 tagccgttca caaatccgtt agaaaaggcc gcattctgat aagcgtccag ggcgttgctg
      841 attggaccgg caggccaaac gatagccgcg acggacagga tgaccagcgc aataattttc
      901 aacggcgcca ggaaattccc taccgtatcc agcagcttac ccggatagag ggaaaccaga
      961 ataacgatag cgaaatagac cacgctgtaa atcagcaacg gcattgcaga atcgccggtc
     1021 aacggagcga taccgacctc aaacgacacc gtcgcggtac gcggcgtcgc aaataacggc
     1081 ccgacggcca gatagcaaac ggtcgccagc aggagtcccg ccactttacc aatcggcgta
     1141 ctgaggctgt ctacgccgcc gccgactttc gccagcgcca caacagtaag aaccggtagc
     1201 cctacggcgg taatcagaaa gccaatagcg gctgtccaga cgtgttcacc cgcctgcaaa
     1261 ccgaccatag gaggaaagat aatattgcct gcgccaacga acagcgcaaa tgtcataaag
     1321 cccagggcga tgatatcgcg cgattttaac tgatgggtca taaagtctta ctgcctgtgg
     1381 atggtgatgt tgtaaacatt aaaatttttg cctttcccgg aggattataa agcggcgttt
     1441 tttatcaatt tcagcgggaa aaactcccgg accgatgcgg cgaagaattg tttttcgatt
     1501 taccgcgcaa atgcagtcgt aatgacagca cctgaagcgc aatttaaacg cttataacgt
     1561 tttaaagcaa ggtgggatct aaaaaccaga tgaatatcgc gatatgaaat ttacaaccag
     1621 aataaaacac cattctcatg aaaaagttat ggctaatcat gcgaacaaaa aatcaccaaa
     1681 cgttgaatgt ttcaacgagc ccgtcttaac tgcaaagaaa ataagccagc atccgctggc
     1741 ttatggaaag ttatacttac gaaaggcaat taatcactat ttttggcaat taaacgttcc
     1801 ggcagcacaa agctaaatcg cgttcctttg ccaggcgaac tgtcgatttc aaggcggctt
     1861 tcatggtgat tcaacgcatg tttcacaatc gccaatccca ggccgctgcc gcccgtttgc
     1921 cgcgaacgcg ctttatcgac gcggtagaag cgttcggtca gacgaggaat atgctcggca
     1981 gcaatccccg gaccgttatc ttgaatgcaa aattcagcgc catgcgcggc acgtcgccag
     2041 ctcaccgtaa tatgcgttcc cgccggcgta tggtttactg cgttatatac caggtttgag
     2101 atcgcgctac gtagctgctc ttcattgccc agaacgctaa gactatcgtc gaccgcaaac
     2161 gtaaaggtat gtttctgctg gctgagcgtc tgcgcttcac gctccacgac ccgcagcatc
     2221 atcggtacat ccactttttc atttaataac agcgccgggg ccacctcaat tttagacagc
     2281 gtaagcagtt gttttaccag cccttccata cgatacgttt gctcgcgcat cgtatgcagc
     2341 gctttctctc gcgtcgcccc ttccagcgcc tgttcctgca tcatttccag atagccttgc
     2401 aataccgtca atggcgtacg caactcatgg ctaacgttgg cgaaaaagtt acgtctggcg
     2461 ccttcaagct gatgcatttg cgtcacatcg cgcgccacca tcaggagttg tttatcggta
     2521 taaggcatga cgcggatctc cagatgccgc ccggtattga gcaccaaatg aagcggacgg
     2581 gtgaaatcac gcgtttttaa atactgggta aactccggat aacgcagtag attgagaata
     2641 ttctgcccgt tgtcatccgg ccagcgtagc cccagtatct gttgcgccaa accgttacac
     2701 caaaaaatgc cgccctcttc tgtggtcagt accacggcat caggcagcga ctccgcgccg
     2761 ctgcgaaaac gtttaatcag gttccccagc tcgcggcgac gcttcttatt tcgcaactgc
     2821 atctggtgta aaccgtataa cagcggttcc caacttcccc gccccggcgg cggcgtcata
     2881 cttctgtcga cccaaagcca ccaggagagg cgtaacaaat tccagaaatg ccagacaagc
     2941 agtcccgtca ccgccgccag taaaaaccac ggcagataac caaaaaaagc gctaaggata
     3001 agcgcgggga tgcaacagag caccagctcc agcaccagcc ttttccatga cagccgttcc
     3061 agcacgcgtc atactccctc aagaatggaa agccttctcc gccagaaacc tgtgatcaac
     3121 tggcggaaaa ggcattaaaa gcgggtcgaa aaacgatacc ctgtcccgcg taccgtttgc
     3181 accatccggt cgtggccgct gtgctccagc gccttacgca aacggcgaat atgcacgtcg
     3241 accgtccggt cttcaacgta cacattggtg ccccagacat gattgagcag ctgttcgcgg
     3301 ctgtaaaccc gttccgggtg cgtcataaag aaatggagta atttaaattc ggtcggcccc
     3361 atatccagcg ggctgtcgcc ggtcatcacg cggtgagagc caggatcaag gctcagtccc
     3421 tgcatctcga tcacctcttc gaccgccatc ggcgagatac gccgcataac ggctttaatg
     3481 cgcgccacca actccttggg ggaaaacggc ttggtaatgt aatcgtcagc gccggtttcc
     3541 agcccgcgca cacgatcttc ttcctcacct ctcgcggtca gcataaccac aggaatatcc
     3601 cgggtcatgg cctcacgttt gagatgttta ataaactgta accctgaccc gccgggcaac
     3661 atccagtcaa gaaggatgag atccggccag ggttcattaa gtttattcac cgcactgtca
     3721 taatcttcgg cttctacggg ctgaaagcca ttttgttcga gcacgaagca caccatttca
     3781 cggatcggcg cctcatcttc tacgaccaga atacgtctcg ccataatttg ccctgttagt
     3841 cgttagttat caatgccgcg ccattatgcg tcagatttat gacagattta tgaaaaaaaa
     3901 aggcggcatt gacagcatgt tgatgattta tgacaccggt gaaaccgtgc attaccgtgt
     3961 accggcggta aattgcgccc aaaaatggag gggatgacgt gtataatccc gttcacgctt
     4021 tttttgcatg gaacaattat gcgcatcctc cacacctctg actggcatct gggacaaaac
     4081 ttctacagta aaagccgcgc cgcggagcat caggcttttc tggactggct gctggagacc
     4141 gcgcaggccc atcaggtgga tgccattatt gtcgctggcg atatttttga taccgattcg
     4201 ccgccaagct atgcccgaga actttataac cgtttcgtcg ttaatttaca gcaaacgggc
     4261 tgtcatctgg tggtgctggc cggtaatcat gattccgtcg ccacgctaaa cgaatcgcgc
     4321 gacattctgg cgtttctcaa tacaaccgtg atcgccagcg cgggctatgc gcctcggcta
     4381 cttcatcgtc gcgacgggtc tccgggcgcc gtactgtgcc ccattccctt tttgcgcccg
     4441 cgcgacatta ttaccagtca ggcgggatta tccggcagcg agaaacagca gcaacttctt
     4501 catgcaattg ccgattatta tcaacagcag tatcaggaag cgtgcctgct acgcggcgaa
     4561 cgaaagctgc cggttatcgc aacgggacat ttaaccaccg tcggcgccag caaaagcgat
     4621 gcggttcgcg acatttatat cggtacgctg gatgcctttc cggcgcagca tttcccccct
     4681 gcggattata tcgcattggg acacattcac cgcgcgcaat gtgtcggcgg cacagagcat
     4741 atccgctatt gcggctcgcc catcgccctc agctttgatg agtgcggcaa aagcaaatgc
     4801 gtgcatctgg tgaccttcga ccagggaaaa tggcaaagta ccgaaagtct ggctgtcccc
     4861 gtgactcaac tgttggcggt tttaaaaggc gacctggcgt caattaccga acagcttgag
     4921 cagtggcgcg gcgttgagca atcgcccccc gtctggctgg atattgaaat caccaccgat
     4981 gattatctgc atgatatcca acgcagaata caggcattaa cggagtcact ccccgtagag
     5041 gtattactgg tgcgccgtag ccgcgaacag cgtgagcgct cgctggcgaa cgagcggcgg
     5101 gaaacattaa gcgagcttag cgtggaagag gtttttgcgc ggcgtctggc gctggaagcg
     5161 ttagataccc cgcagcgcga gcgcctgaat cagctctttt ccagcacgct ctacgcgttg
     5221 aatgaggagc atgaggcatg aaaattctca gtttgcgtct gaaaaacctg aactcgctga
     5281 aaggagaatg gaaggtcgac tttaccgccg aaccgtttgc cagtaacggg ttattcgcca
     5341 ttaccggccc gaccggcgcg ggaaaaacca ccttgcttga cgccatctgc ctggcgctgt
     5401 accacgaaac gccgcgcctg aatacggtat cgcaatcgca aaacgatttg atgacgcgcg
     5461 atacggcgga atgtctggcc gaagtggagt ttgaggtaaa aggcgaagcc tggcgcgcgt
     5521 tctggagcca gaaccgagcc cgaaatcggc ctgacggcaa tctccaggcc ccacgcgtgg
     5581 agctggcgcg gtgttcagac ggaaagatct ttgccgataa ggtaaaggat aaactggaga
     5641 tgatcgccac gttgaccggg ctggactacg ggcgcttcac ccgttcaatg ttgttatcac
     5701 aggggcagtt cgccgccttt cttaacgcca aagcgaaaga gcgcgcagag cttctggagg
     5761 agctcaccgg cactgagatt tacgggcaga tctccgcaca ggtatttgaa aaacataaat
     5821 cagcccgtct cgaactggaa aagttacaag cgcaggccag cggcgtcgcc ctattggcgg
     5881 acgaacagtt acagcaactg gaagccagtt tgcaggcgct tactgacgaa gagaaacgcc
     5941 tgctggccga ccagcaggga cagcagcagc accttcactg gctgacccga aaaaacgagc
     6001 tccacactga attacacgcc cgacagcagg cgctgtacgc ggcgcaagag gcgcgagaaa
     6061 aagcgcagcc gcagctcgcg gcgctgacgc tggcgcaacc tgctcgccag ttgcgtccgc
     6121 attgggagcg cattcaggaa caaacccgcg ccgttgagcg tgttcgccag cacagtgatg
     6181 aagtgaatgc tcgcttacaa agcgcgtatc gcctgcgcca gcgtatccgc gcctgcgcgc
     6241 atcgacaatt cacgcaactg aacgccacag ggcagcggtt gaagacatgg ctggcggaac
     6301 acgacggcat ccgcgtctgg cgcagcgaac tggcggggtg gcgagcatta ttaacacaac
     6361 aatcccacga ccgggcgcaa ctgagccaat ggcaacagca gttgctgagc gatatgcgtc
     6421 agcgtgatgc gctaccgccg ctcacgctcg acctcacgcc acaggcgctg gcggaagcca
     6481 gggcattgca tacccggcag cgtccgctac gccatcgtct cgccgcgctt caggggcaaa
     6541 ttctcccgaa acaaaagcgt caggcgcagc tacaggcagc tatcgcgcgt catcatcagg
     6601 agcagacgca atacacccaa cgtctggcag ataagcgcct gagttataag actaaagcgc
     6661 aggagcttgc ggacgttcgc actatttgcg agcaggaggc gcgcatcaaa gatctggaaa
     6721 gccagcgggc gcacttacag tccggccagc cgtgtccgct ttgcggctcg acgacgcacc
     6781 ccgccatcgc cgcctatcag gcgctggaac tgagcgcgaa tcaaacccgc cgcgacgcgc
     6841 tggaaaaaga ggtcaaaacg ctggcggaag aaggcgctgc gctgcgagga cagttagatg
     6901 ccttaacgca acaattacag cgggatgaaa gcgaggcgca gtcgttgttg caggaggagc
     6961 aagcgcttac tgaggaatgg caaacgctgt gcgctacgct gggcgttcag ctccagccgc
     7021 aagaagacct cgctggctgg ctgaccgccg cggaagagca tgagcaacag ttggatcagc
     7081 tcagccagcg tcatgctcta caaacgcaaa tcgcggcgca tactgaacag gtagcgcgct
     7141 ttaccgcgca gattgcacag cgtcaggcgt cgctgacggc tgatttggcg cagtatacgc
     7201 tttcccttcc tgcgccagaa gacgaggcat cctggctgaa tgagcgcgcc gacgaagcga
     7261 aaatatggca acagcgtcag acagagttcg cggatttgca aacgcagatc gacaggcttg
     7321 ccccgttgct ggagacgcta ccgcaaacgg ataccgcgga ttccgacgac gacgtgccgc
     7381 tggataactg gcggcagacg catgatgagt gcgtgtcatt acaaagccag ttgcaaaccc
     7441 tgcaggaaca gacgacgcag gaacagcagc gcgccgccga ggcgatagcg cactttgatg
     7501 cggcgttaaa aaatagcccg tttgacagcc aggcaacgtt cctggcggcg ttgctggatg
     7561 aagagaccgt gacccgtctg gaaaaacaac aacaaacgct ggaaagtcag ctacaacaag
     7621 cgaaggcgtt aagcgcgcag tccgcgcagg cgctggctga ccatcagcaa cagccacccg
     7681 ccggtctgga cccaacgtgt acggcggagc agctcgcgca gcggctggcg cagttggcgc
     7741 aacaactgcg cgagaacacg acacgccagg gggaaatccg ccagcaaatt aaacaggatg
     7801 cagataatcg gcagcgccaa cgggcgctga tggcggaaat gaagcaagcc tctcagcaag
     7861 tggaagactg gggctatctc aatgcgctga tcggctctaa agaaggtgat aagttccgca
     7921 aattcgccca gggactgacg ctggataatc tggtctggct ggcgaatcat cagctcaccc
     7981 gcctgcatgg ccgctattta ttgcagcgca aagccagcga cgcgctggaa ctggaggttg
     8041 tcgatacctg gcaggccgac gccgtgcgcg atacgcgaac gttatcaggc ggcgaaagct
     8101 tcctggtcag cctggcgctg gcgctggcgt tatcagattt ggtcagccat aaaacgcgca
     8161 ttgattcctt gttcctggac gaaggcttcg gcacgcttga tagcgaaacg ctggacgccg
     8221 cgctggatgc gctcgacgcg ctgaatgcca gcgggaagac catcggtgtg attagccacg
     8281 tggaagccat gaaagaacgt atccccgtgc agataaaagt gaaaaaaaat caatgggctt
     8341 ggttatagca aactggacaa agcgtttgcc gtggagtaac gcgagtgtca tcctgcgcac
     8401 agcataccgt catgacatag cataataatg aatacacaaa gacgaataag gaatggtatt
     8461 acctcgcgct tatccgcaag ctatacgttg attggctgtg acaattcata gccacagcgc
     8521 gcgacatgcg tcttcatttt cggcaggtgg tatgaaaaaa gttatttttt ctttggcgct
     8581 gggtacgttc ggactgggga tggccgagtt tggcattatg ggcgtgctga cggagctggc
     8641 acgcgatgtc gggataacga ttcccgccgc cgggcatatg atctcgtttt acgccttcgg
     8701 cgtcgtgctg ggcgcgcctg taatggcgct cttttccagc cgcttttcgc ttaaacatat
     8761 actgctgttt ctggtcatac tgtgcgtgat gggcaatgcc atatttacct tttcctcgtc
     8821 atatctgatg ctcgccgtcg gcagactggt ttccggcttt ccacacggcg ccttttttgg
     8881 cgtcggtgcc attgtcttgt caaagattat ccgccccggg aaggtcaccg ccgccgtcgc
     8941 gggtatggtt tcagggatga cggtggcgaa tctggtgggc attccgttcg gcacttacct
     9001 gagccaggaa tttagctggc gctacacctt tttattgatc gcggttttca acatcgccgt
     9061 gctcaccgcg attttcttct gggtgccgga tattcgcgac aaagcccaag gcagcctgcg
     9121 cgagcagttc cacttcttgc gtagccccgc gccgtgactc attttcgccg ccacgatgtt
     9181 cggcaatgcg ggcgtttttg cctggttcag ctatatcaag ccatttatga tgtacatctc
     9241 cggtttttcg gagacgagca tgacgtttat tatgatgctg gtcgggctgg ggatggtgtt
     9301 aggcaatctg ttaagcggca aactctccgg tagatatacg ccgctgcgca tcgcggtagt
     9361 gactgacctc gttatcgtgc tctctctcat ggcgctcttt ttcttcagcg gatacaaaac
     9421 ggcatcgctg actttcgcgt ttatctgctg tgctggtctg tttgcgctct ctgcgccgct
     9481 gcaaatcctg ctgctgcaaa acgccaaagg cggcgaactg ctgggcgcgg cgggagggca
     9541 aatcgcgttt aatctcggta gcgcgattgg cgcctggtgc ggcgggctga tgctgacgct
     9601 aggttttgcg taccactatg tggcgcttcc cgccgccctg ctctcgtttt ccgccatgtc
     9661 gtcgttgctg gtatacggac gtctaaaaca caagcagcca tcggtcacgc cggttgccgg
     9721 atgacgccat ccggctagaa acgttacgcc agcggccaca gccaggccgc gccgcgcacg
     9781 ccgctcgaat cgccatgccg cgccttacgt accggcgtct cgcactcgcc gccaaaaaca
     9841 aacgatttca tcagcgacgg aaccgttttg tacaggcgct caacattgct cataccgccg
     9901 cccagcacaa tgacatccgg atccagaata ttcacgacat gagataatgc cttcgccagc
     9961 cgtagctcat aacggcttat cgccagttcc gccacggcgt cctgcgcgtc gaccagacga
    10021 ataatctcat cgccttttag cgttttaccg ctcaaacgct ggtaatccgt ggcgaatccc
    10081 gtaccggaaa taaaggtttc gatacagcct tgtttaccgc aataacaggg aatttcttcg
    10141 cggtaacgca actcatcgtc atccatccac ggcaacggat tgtggcccca ttcgcctgcc
    10201 gtaccgttgc cgccgatgtg cgcccggcca tttagcgcta cgcccgcgcc gcacccggta
    10261 ccgataatca ccgcaaatac cgtttgcgcc cccgccgccg cgccatctac cgcctctgat
    10321 accgccaggc aattggcatc gttggctaac cgcacttcac gcttcagacg acggctcaca
    10381 tcgctatcga acggctggcc gttaagccac gtagagttag cgttttttac cacgccggtg
    10441 taaggcgaga gagaaccggg aatgccaatg ccaacgctac cggtctggcc ggtcgcctgt
    10501 tccgccatgt cgaccagcgt agcgatggtt tctatcgttt gctgataatc ctcccgcggc
    10561 gtaggcagac gatggcgaaa ccgctgctct cctgcatcat caagcgcaat gacttccgtt
    10621 tttgtgccgc ctaaatcgat accaatacgc acataccgct cctcattttt tgggaatatc
    10681 aacagggtag aattcaccgt tctgattggc aatgcaagcc tgccgacaat tcgttactat
    10741 accgactgga tttaacgaca aggccgtgga aattatcatg ctgtggttca aaaatttaat
    10801 ggtttaccgt cttagccgcg atatcacatt acgcgccgaa gagatggaga aacagctcgc
    10861 ctcaatgacg tttaccccat gcggtagcca ggatatggcc aaaatgggct gggttccgcc
    10921 gatgggctct cacagcgatg cgttaacgca caccgccaat ggccaaatta ttatttgcgc
    10981 gcgcaaagaa gagaaaatcc tgccatcgcc agtgatcaaa caggcactgg aggcgaaaat
    11041 ccagaaactg gaagccgatc agggacgcaa gctgaagaag acggaaaaag attccctgaa
    11101 ggatgaagtg ttgcattcgt tgctgccgcg cgcgtttagc cgcttcagtc agacaatgat
    11161 gtggattgat accgttaacg gcctgattat ggttgactgc gccagcgcga aaaaagcgga
    11221 agatactttg gcgctactgc gtaaaagtct tggctcgctg ccggtcgtcc cgctggcgct
    11281 ggaaaatccg attgagctga cgctcaccga gtgggtgcgc tccggtacgg tcgctcaggg
    11341 tttccagttg ctggacgaag ccgaattgaa agcgatgctg gaagatggcg gcgtgatccg
    11401 cgcgaaaaag caggatctgg tcagcgacga gatcgccgtt catattgaag cgggtaaagt
    11461 ggtcacgaag ctggcgctcg actggcagca gcgtattcaa ttcgtcatgt gcgacgacgg
    11521 ctccattaag cgtctgaaat tctgcgatga gctgcgcgat cagaacgaag atatcgaccg
    11581 ggaagatttt gcccaacgtt ttgatgcgga ctttatcctg atgaccggcg agctggcggc
    11641 gctgattcaa agcctggtgg aaggattagg cggcgaagcg cagcgctaac cagagggtcc
    11701 ctctccgccg gagaggggac tcaccgttac aaatagcggc acagatacga ggtgggctca
    11761 gcgacctgta gatgaaactc gctgtggcca ggcacgttaa acacctcacc ggctgtatac
    11821 actttccatt cgacagttcc cggcaacagt accttcaacg cgccgctcac aaccgtcatc
    11881 tcttcgggtt cggcggtgcc aaatgtatac tccccttccg ccatcacacc aacgctggcc
    11941 cggccggtgc tactgctggt aaatccaata gacttcactt tcccggaaaa gtattcattg
    12001 ctttgtagca taatcaggcc ccgtctcatt attaaattaa cacccaatat agagtcctga
    12061 cgttcggcct gtcacgtaaa attagacaag cagttctgaa gctaaccgcg caatcaaaac
    12121 attagagagt aaaaccggca catccagcgc ctgctgtaaa atatcccgat gacgctgatg
    12181 aaaacccaga caatccagca taatgacgtc cgcgccttga tccagtagcg cctgcccggc
    12241 atcaattaac tgttgctcag aaccgtgaac cggattcgcc agcgaataca ccggcggcat
    12301 ttgcaatacc tgccattttt tctcctgggc cgccagaagt tctgcaacag gcacaatcgc
    12361 gcccacctga tgtccatcca caatagaggc gacaagcggt ggaataatac gcagcggttc
    12421 aagcaaaata gaattacggg ctgccgtact tttaatcgcc gcggtgctca tcagtataat
    12481 gacatcgtaa ccctgattat ccagcacctc gacaacgctc tgtaaatctc gctccacttt
    12541 ctggcgggaa acatgggcta tctggttatc attcagcaac gtcaaaagca gatcgtcgcc
    12601 aggctctaca gcgtaatccg ccataacgtc ttcccggctc atttttccca gcaggctatg
    12661 atgggttatg tgttgttcgt cgatgtattc cgtcagaagc ggtaacactt cgctcattgg
    12721 cacaacgccg attgtgagga ttgccaacga cgcactcatt tttattccac cttattactt
    12781 cgtcgtaatt cccgggcaaa tattcacacg ctcaccgcgc tacctgccct acaaatctca
    12841 gaaagcgtag cagcagatga gcaacgtatt gtgtaaagat tccaaataac tccaatattg
    12901 tattgttatc gcttaattta tggttttagt tgccagtata aatgtttcaa gaatgtgatg
    12961 gagatacaat ttaggggtac tcagaatccc ttccgagtgg ttcatgcgtc tatgatttat
    13021 ccggatcttc gtaacgtttt ttcgcatcca tcgcttcttc tgcggtcgga tgctcgctga
    13081 tgagcgaatc aggtttcgga tggtcagccc gtagctgata ccacgtcacc gtctggcccg
    13141 gcgtgccttt ttcaatggtg acgatataag cttcccgcgg ataaggtggt ctggttggca
    13201 tagcgtttcc tttattctgg gtgagcgtta agtatagaca tctccctgta accgttgcgt
    13261 cgacggcggc agcgccgcaa taatttcaga aacgacctgg gccggcgctt tcgtcgcgtc
    13321 aataatgtaa tgcgccgttt cgcgatacaa cgcgtcacgc tgctcaagca cttcccgaac
    13381 ctcttcgctc aacggcttgc cggtgagggt cgggcgcaga tccgcttcag gttcagcctc
    13441 aagccggtta accagcgtgg ataccggcgc gcacagataa atcactacgc caacacggtg
    13501 catataacgt cggttatact ccgtgagaat aataccgcct cccgtcgcca cgacagtcga
    13561 aggcgcgctt accgcctcca gggccgcggt ttcccgggcg cggaaccctc cccagccttc
    13621 tttttcaacg atatcagcga cgctcatctg cacgtgcgat tgcagccagc ggtcggtatc
    13681 tgcaaaccga aaaccggttg cctgcgccag cgccataccg atggtggttt tcccacagcc
    13741 ccgcgggcca acaagataaa gaggttgcat catagcaggc gttcccccag gaactgcgca
    13801 tacgcaggat ttgatatcag taatgttata atcatatcat ctaactagta caacgcataa
    13861 atgtaaataa taatttacac aaaggtacta aagtcacaat attagtacta tagcaagaat
    13921 cagaaatgaa taaactgtaa atttttcatt acatgattta ttttttacgc tggctttcca
    13981 gccaccactt atccagctcg gcggcaaaat gctgacgatc gcgcggcgag agagtgtttg
    14041 gtccccccgt ttgtacgccg ctggcgcgta gcgtgtccat aaagtcacgc atcgtcagac
    14101 gttcgcgaat cgtggcgtcg ctatagcgtt ctccccgggg attaagagcc gcagcgcctt
    14161 tttccagcac ttcagccgcc agcggaatat ccgcggtaat caccagatcg cccgcttcgc
    14221 attgacgcac aatttcattg tccgccacgt caaacccggc ggccacgcga agcgtgcgga
    14281 taaaacgcga aggcggcacg cgcaaggcct gattggcaac cagaataagc ggcaactgca
    14341 tccgctcggc ggcgcggtac aaaatttctt taatgacatt cggacacgca tccgcatcca
    14401 cccagatggt cataatgtct cccgtacggt atacaatctt ttattgtctc gcgcttttgt
    14461 ctttcatcaa agtgctgttt ctccttctgc ccgttttcaa tccgcgttaa gctaaccatt
    14521 ccccataaca cacaaacata gggagtgacg agatggagaa gaaaatcggt tttattggct
    14581 gcggtaatat gggcaaggct attcttggcg gactgattgc cagcggtcag gtacttcccg
    14641 gccagatctg ggtctacacc ccctcccccg ataaagttgc cgccctgcat gatcagtacg
    14701 gcattaatgc ggcgcaaagc gcgcaggagg tcgctcaggt cgcggatatc gttttcggcg
    14761 cggtaaaacc gggcattatg gtgaaagtgc tcagtgaaat ctcctccagc ctgaacaaag
    14821 actcgctggt ggtctctatc gccgcaggcg taacgcttga tcagcttgcg cgcgcgctgg
    14881 gacacgaccg taaaatcatt cgcgctatgc cgaatacgcc gtcgctggtc aacgcaggaa
    14941 tgacctccgt cacgcccaac gcgctggtca caccggaaga tacggctgat gtgctgaata
    15001 ttttccgctg ctttggcgag gcggaagtga ttgctgagcc gatgatccat ccggtggttg
    15061 gcgtgagcgg atcttcgccg gcctatgtct ttatgtttat cgaggcgatg gcggacgctg
    15121 ccgttctggg cggtatgcct cgcgctcagg cttataaatt cgccgcgcag gccgtcatgg
    15181 ggtcggcgaa aatagtactc gaaaccggaa agcatcccgg cgaactgaaa gatatggtgt
    15241 gctcgcctgg cggaacgacg attgaagccg tacgcgttct ggaagaacgt ggcttccgcg
    15301 ctgcggtaat agaagcgatg acgaaatgta tggaaaaatc agaggcgctc agtaaatcct
    15361 gaagcccggc tggacgtcat gccgccactt cggtgcggtt acgtccggca ttctttgctt
    15421 tgtaaagcgc catatccgca gactttaacc attcccgata atgaccgatt tgtggcgtta
    15481 acggcgccac gcccacgctg atacgtaaca tgacctgcgg cgcgcccggc aagcgtaagg
    15541 tatttagccg ttcatgcact cgcgacatgg cggtaatcgc gctgtctgcc ggcgttccgc
    15601 acataatcac cgcaaattcg tcgccgccaa agcgcccgat aatatcactc ccgcgtagcg
    15661 ttatctgtaa ttgacgcgtc agggcgataa tagcctcatc cccagcatca tgtccccagg
    15721 tgtcgttaat gctcttaaaa tgatcgatat cgataatcaa caatgtcgcc tcccgatggt
    15781 ggcgtcggct gtgatcgaat tcattacgta ataaaatttc ccagtggcgt cggttataga
    15841 cgccggtcat gccatcccgc gaactcatcg cctgcaagcg tcgcttatgt tccgctaatt
    15901 taatggccgt ttgataactt acccaggcga acagaagcgg atacaacata atgacgggca
    15961 aagagagcgt gacttccagc gacgagcttc gcatcgcgac gggtagcccg gtaagctgca
    16021 acgtcaccag acatgacgcc agcaaaaggc ccattccgac agtgaatagc cgccgcccgc
    16081 cagcgcccat cagattcatg ctcatcatca taaacagcgc ggcggcaggc aacatattga
    16141 cgcccatcaa cgcgatccac atgccggaga ggatcgcatc cactttcagg ttgtaaattt
    16201 cctggcgtag cggatcaagg gctttcgccg cccactgcca cgccagatgc ggccagacaa
    16261 aagaccagcc gaccagcaat aaccaccagc cgccaaagac aggttgcgac actaacacgg
    16321 cggccaccgg taaaagcatc ccccctaacc ccaccgcgcg cggtagcctg atgcgccggg
    16381 cgaagcgcaa tccggagcgc tgacgatcat cagaagggtc aggcggcgct accgcctgct
    16441 caaccgcttt tcggtaaaaa ttttcatcat tcattatttt tgggaacatt tagaaacaat
    16501 tttcccaaat tatagaaaca gagcgcatgg agggagtatg aaatttcggg tgagtgtttt
    16561 tcagggctca cccgatagca ctacgccgct tttttcaggc aggcgctcat aaacttgcta
    16621 cggtcatcgc ctttcagtga ttgttccgtc gcctgaacat tgcattcacg cattttctgc
    16681 tgttgcggcg tcaggctttt ctcgccaggg gctgactggc tgtttttcag gcagtcgcta
    16741 aggtaggttt tacgcgcatc gcctttcaac gcttgcgctg tcgcctgctg attacaggtc
    16801 gtcatgcgct gctgttgcgg cgttaacggt ttctcggttg cgccgacggc ggttaaaaag
    16861 accaggccaa aaagtaaagt caccagtaat gttattttca tagcaccatc cttttgtcag
    16921 tgtacacatt acacgttgtc cctttgggaa atatcccagg gactttatat aagtctggct
    16981 gttactggca aaaataccac ccggcagtaa aagtattact taccgttagc aatatatgtt
    17041 ttattgattg acaaaccgta ggctaatgtg caactcgatt atccacagtc acactggcag
    17101 gatgcagaag aacagcgcat aacgttacac tgttattacc atagccgctt cgtttttatt
    17161 ttgctctgta ttaaccagaa gaaaataaaa acgaagcggc tatgttattt cataaaagta
    17221 acgttataac aactgtgttg ttttaaatac gattagtgcc gggggtgtct cagcaacttt
    17281 tttacatatt ggcgcagcaa ttccgtatcg tgatcaggaa cgctggcatc cggctttacg
    17341 ccttcaagtg ccccctctac ctgacgtatc aacatctcct gctcgttttg cgccatgtta
    17401 cgtaacattg ctgtgacgat aatctctaac gcttctacct gagcaaccag ttctttcgac
    17461 tcttcttctt tttgggctag cttaagcaac aactctgcta tgagattttt catgaccata
    17521 tttccttatt agttccaggg tgacgttatc actatgaaga accactgcct agaggctga
//
LOCUS       DAJVSD010000075        17535 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.075, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000075 DAJVSD010000000
VERSION     DAJVSD010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 17535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17535
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.075"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(108..209)
                     /locus_tag="OQP62_002059"
                     /pseudo
     CDS             complement(108..209)
                     /locus_tag="OQP62_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(210..7477)
                     /locus_tag="OQP62_002060"
                     /pseudo
     CDS             complement(210..7477)
                     /locus_tag="OQP62_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001528616.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(7589..13981)
                     /locus_tag="OQP62_002061"
     CDS             complement(7589..13981)
                     /locus_tag="OQP62_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016505166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721615.1"
                     /translation="MDRNRQVNKVVHFLLTLLIMFVASIAPAQALLKGGTWQELNSAT
                     AAVNGTVPRADGAIIPVYQGSMLLDPTKTYDVAFTAMPRDFSADATSTSMRAVNSTDT
                     EGDLFSDPPTIAWENQQPPSVGLLWADAATPDTPLSPQPTPNQTFCAQNLAGRKLVVW
                     PQPDDETTVPALWLYTHTGVPNNAAIPLLSPKVTVNIAQAVGNPVSVSGDHVDASFKA
                     SKVKVGESITLTVTTRGCDGKLVKNAPFVIRREDAKNRQGVVNNTNPVHVGDAELTTV
                     QTEYRGVTDAEGKATVVVTQDEGPGVKTHLIVASQSYPTLTDGVDVIFTTITSPDTAQ
                     ANMYGHMLESASATLNGATYTFTRPKLAVEAGNADESVNDTNETWAQFTWSGADNHCD
                     VLPDAEQLVALRHAHSTLATYTGWPASGDAEYWSSTKDQMNNYHAAVHMNSASVVRAP
                     NSDTLLVSCVDKAQPAAHPQITLSPEGPYKAQVGESIDLVMTVVDKDTQKPLPYRYME
                     LFIDPAKNRKGEHQDAWDNQRVTVSSEDMRASSPEHYTGVTDVNGQAHLTLQHDSGMG
                     GETPIRIVMPDDEGGNVELPFSVIFTVITSPDVDGANMWGHMRGVVDAGNLYKRPLLA
                     VEASHKDGQFSENNEEWATFNSVASATAQCGVGQVPDQSSLAHLYSEHPSGKMEIEHG
                     WPTEDYFIAADSDASGTVHVNLANGDSNKFTNQPNYLTCSANEMVAVLDVYFNDDPTT
                     KNADMTAKVGEQIKLNIHSRNALNDMAIAYTDFTITMANGKRRDGLTTGFTDPSNGEM
                     QFDGVGYLAGQVYHGITDANGDATIILTQNKGVGLLTPLSIAPVDSLIKTPISRSVKF
                     TVATSPDTVKAKMWGHMADTLTVGDWTFERPKLASEVNSPLRTQEESNETWTRVAHID
                     AAGNPDAGGCAANRLPRIDQLEALYSANSGGAMKKTQGWPTLINYWSSTYQSATTWKL
                     IALASGSEFPGSNTSVYTSCLASDNPVPAAITIEPVDPSQWYDGSGVHALKVKKGDTL
                     QLKVTVKDASGKPVPEAPFVLTRGDGYDRKGEKYTAQDGSDLQNIVTPVVIDGESLAW
                     TTTKMGSQTGPDGTRIISVTRPDTHGTRTAITATLYENVAVSASIDTIFTVVTSPDVS
                     VARMWGHMTPSLTAADSAVYKRPLLYDELASKTGAAEYPEDNERWVVFYGPNTTKTVS
                     PEACSKGYFPSVEQLDSLYSKYPNGAIKTAQGWPIIRSYWSGTNAGTITPGAPPYDYY
                     TVDLNDDAHRKVPNISDSDRQYQICAATPQPLAGRITLTSTLATDSDIQAVKAKNSDS
                     IPLVITTTDAAGNPVPYTPFSLIRDAGTARNTSYTFTGSTNMMLAPPTGSAQQFYYNG
                     YTIYGATGADGTAVLTLTQAAGPGVKNVITAALTDTPTVTSTLPVVFTTVTSPDSPQA
                     NMYGHMPETFTASNGAEFKRPLLYSELASTLGVKSYADTNENWPIVNNFDTSNYGACS
                     INQMATLDDLKALYGDHPSGKVTTDIGLPVRKKWWAGDSLLQGQVIYWRYIDLSTGID
                     YSMSGTPGNYYYQLCLTKPRQMNIALSTDAWNADKSAAVAKKGETIPMTVKVTNAAGQ
                     PVSNATVKITRGDALTRAGSVYTTNNADDITLSNIQPSGTATYLLGSVDKYMYAQTDA
                     QGQITFSVSQNNTMGLKTPIRVTVANDITATSSKDVIFTVLTSPDVASANYWGHMPET
                     VEGPDGLRYQRPHLQAEAPSGVNYITVNGEKWAAPTGVQTYTAGQSACDVEYMPLMND
                     LKALQQLYPDGALEDQFGWPVKTGKLWWSADLNSSKAHQAINLKTGQISAPTSTSLQA
                     CLVNARNVPASITLTSTAMDAEKGAAVAKKGEAIPLTVTVKNRAGVPIANEPFTLKRG
                     DANDRLDIKYTWNTTADDLTLQELTPSPTTKSMTASGNVFSGVTGADGTATFTVNQDG
                     SVGLKTELTASATGDVTQSTNTALGVIFNVITSPDTDKAQYWGHMPDTLTVGGVTLHR
                     PLLMKEAPAGATDSRKENNETWVSVYTKADGLTYDMSKNCGGVAGFPAKGVLEKIRDE
                     QMAVANGWPTVSLPYASSTPGTYNYCWVSLAKGGTTHCPTTSSDYSIGYAACLVQP"
     gene            complement(14101..15066)
                     /locus_tag="OQP62_002062"
     CDS             complement(14101..15066)
                     /locus_tag="OQP62_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721616.1"
                     /translation="MQATVKRRLTKVALALVVAGYCAAPAVAANGNLKSGQWQIVSEQ
                     TGTIQGTVPWITRAADKTADTDKDHVTVTIDRGDRKIVTEGDKQFHVGDKVTVNWAIG
                     DTEGDLDVDNAATKLTVQWMRYSDQNGSNPEEIGAKGSDTYEIQAGDADHYIGIKITP
                     TTTTGDPAVATELLLKDLSTDAGGGADGDDIPEGPVVDENVHVVIHEKDSNTNLLKNS
                     GTTLKTNTTYQVLLWSDKNGNGTYDAGENVTDQYDYRWKFVGTSKIAGTGTGGIVNEN
                     WNDKDLVIPLTNAEAKEAFEGAEGGVTVGSDGVQGFGLSIDYKRK"
     gene            complement(15124..17316)
                     /gene="sinH"
                     /locus_tag="OQP62_002063"
                     /pseudo
     CDS             complement(15124..17316)
                     /gene="sinH"
                     /locus_tag="OQP62_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461452.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="intimin-like inverse autotransporter SinH"
BASE COUNT         3310 a         5024 c         4894 g         4307 t
ORIGIN      
        1 tatcatgcga cacctggtgt tattttgtat ataggtagcg ccagataccg ggttacagaa
       61 gggaaacggc gcatctacac accagcggca aacggtgatg actccaatta gcagaacata
      121 tacttttcaa tgaatgctcc gatcactttt tcatgaagct caattgaacg tgaaaaacaa
      181 attatttttc gtgccagacg cttaatacgt tactccacgc acgtcgcata acctgctgta
      241 cttgccggct gaatggcgca gttttgctgc ttagtattct catccacgcc gcaatacatg
      301 ccgccgcccg aggttgattt agataaatag ggatagccca gcgtcggcca gcctaacgag
      361 ctaattgaat gatacagcgt caacaggtcg ttattatccg gtgctttgct caggctaccg
      421 cactgtttag caatatccca tttagtgttg tccaccgtat gcgtcatcgc ccagtactcg
      481 ttatttgcat gaactccgtt ggtaaatact ggcgtcacgc ctgacggtag ctcagcctgc
      541 agccacggac gatgcagcgt ttttccgttg acggatgtcg tatccgacat atttccccag
      601 aacaacgctt tatccgtatc cgggctggta agtaccataa aaatcacatc cagtgaggcg
      661 tgaagagccg tattgtccgt cagtttcacc gtgagtggcg tttttaaccc cagactttta
      721 tcctgattaa gcgtaaacgt tgccgtaccg tcgctgccgg tagtgccggt aaagacaatc
      781 ccggtggtgg tcatacttcg gctggcgctt gcgggagtca gctctttaag catgagatca
      841 tctgctccgg catccgctgc cacgtcgcca tccgttacca ccgtacctgc ccgatttttc
      901 gaatcgccac gtgacaacgt aaaaccgacg ttggcgaccg ggttaccgct gctatctttt
      961 accgtcaccg ttaacggcat cgcgcttccc ttctccacta ccgccgcgtt tttcgcgctg
     1021 tccatcgccg tcgaggtcag cgtaatattg gcaggagtag acgtatgcgg ctcgaccaga
     1081 cacacctgcg cgccagacac gctcgtggaa ctggtgtggc ctttggcgcc ggtatccagc
     1141 cgcagatact ggtaataccc ggttccaggc tcctggtcca ccgccagcca gcttttaccc
     1201 gcccctaccg gccagccgaa tgccgtattg agagcgctgt ctggatggtc gctatacagc
     1261 gtttgcaggt cattaaacaa cggctgatat gcagcatcac aggtggtcgc gcccgctttc
     1321 tgggtgttcg cgatagtcac cagaggccat gtttcgttat tgtaatagta ggtgccgcta
     1381 ttcgacgtca tctccgcagc cagcagcggg cggtggaatt tcacccccgc gctgttggcc
     1441 gccgtttccg gcatatggcc ccacattttg gctttatcgc tgtccgggct ggtaatgacg
     1501 gtaaaaatga catccatatt gctgacggtc ggcggattgt cggacagcat cgcctgcagc
     1561 gctgttttca ggccgggggt attatcctgc gtcagctcaa actgcaccct gccgctctca
     1621 tccgtagtgc cgtaccagta ccagagctgc tccccggaat aatggtaggc aaatacttta
     1681 gcatccgctg gcggcgcaat cggcgttaac agcatgtcgc tgttgttggt gctgtcacta
     1741 ccgccagccc ggttttgcga atagtttcct cgccccagcc gaatgggcac attgggctac
     1801 ggcgtgccgg cgccgtccgt gacggtcacc gtcagcggga ttttatcccc ttttttcgcc
     1861 agcgcggcgg atttttcggc attcatggcg ctggaggtca acgctatcgc caacaccctg
     1921 cgcttcgcca gacagagctg cgccgttgag gtattcgtat ttgtgacctg cgtaacgccg
     1981 ttatttagcc tgatatactg gaaattattc gtcgagtgcg tatcgttgac tttcgaatcc
     2041 cctgctcccc agtatttccc cgcgtctaca ggcaacccaa aggcggccgt tagtccacca
     2101 ttcggatagt cgttatacaa cgtttttaaa tcatccagcg tcggcaatcc cagccgatcg
     2161 cacgggctgg cggagtcctg atacaggttt ggatagcggt tccaggtgta ccagtgctca
     2221 ttatttgaca ggaaggacgt ggtatccgtc gttgaagaaa gctcggcgcg cagcagcggc
     2281 cgcgcaaact caacgccctt actgttggta aaggtttccg gcatatggcc ccagtatgag
     2341 gccttgtcgc tatccgggct ggtgataacg gtaaagatag cgtctttgct gtctgtcagg
     2401 ttgctgccgt ccatcgtggc ggcgctgatg gtggtcttta aacctgcggt actgtcctgc
     2461 gcaagggtaa atgtcacctg tccctgggca tcggtttgcg catacagata tttcgcggag
     2521 gtatccagca ggtatgtcgc cgggccggac ggcatcacat tacgcagcgt aatatcgtct
     2581 gcagcgcttg aggacgatgt ggcgctgttg acgcggttgt acgaagatcc ccggctgatt
     2641 ttcaccatca cgtttttcat cggctgacct gcggcgtctt tcaccgtgac ggtggcggcc
     2701 atctgctcgc cctttttcgc ttttgcgatc ccggtggctg catcctggcc tgccagcgtc
     2761 agcgtcaggc tggcggcggc gctgcgtggc gaggtaaggc aggtctgcat atagtacgtc
     2821 gtggtgctgg tcgtcgtttt gacatcattg ccgtcgttaa acaggttgac cgccgcgtag
     2881 agcgactgcg cgccgtctga cgacatcacg taatcccccg cccaccagta gcggctgacg
     2941 ttattgttgc cagaactggt catcggccag ccgttacaac tgcgcatggc gttatcaggc
     3001 caggtactgt acagcgtctg gaggttgctg acggtgggca gataattgcg cccgcagccg
     3061 ccgccggcgc cgttctaggc tttatcgacg gttatcatgc cccaggtttc gcctttgtcg
     3121 tagtaaccgt tggcgatggt cagcgatttg ccgggcgtga cgctgaactc gctggccagc
     3181 aacgggcgct tgtacaccac gccgctgctg tcggtcagcg tttccgccat atggccccag
     3241 tagttggctt tcggcgtgtc cgggctggtg acgacggtaa aaatgaccgg tagcagcgcg
     3301 ctcgttacgc cgttgtgctc tatcaccgcc gtcagcggcg ttttaaagcc cgcgccgctg
     3361 tcctggctga tattcagcgt cagcgtgccg tcagcgccgg tggcggtgta atatttaacg
     3421 ccgctgctac gcccgtcgct gtggtttatc tgtatctccg ccgccgacgc gctattcact
     3481 tcctgattcg cgcgcccgac gctgtcgccg cgcgtaaaga taaccggcgt gtcggcggcc
     3541 aggttgccct gggcgtcccg cgtggtgatg atgaccggga tggtctcgcc gactttcgct
     3601 ttggcaaatc cgtcgctgtc gttatacaaa ggcgaagtga gcgttatctg cgtcgccgcc
     3661 ggatgggcgt tttgcaagca gacgaaatag agttgttcac tccacgccag cgagctaata
     3721 ccgccatcgc gcagatcaat cgacttaacg tagcggtttt ccgtactcct gctcaaatca
     3781 gcggtgctgt tctggtagtt tttaccatcc agcggccagc cctgctgcgt attcatggtg
     3841 ccgccgggcc tggcgtcgta cagcgattgc agatcggcaa gtgtcggtac gtatcccgcg
     3901 ccacaggcgt cgttcgccac ttcaaaatcg acgattcccc aggcttcgtt gttttccgta
     3961 ttgtcgccgt gggtaaagcc gctggcgatt tcagccgata acagcgggcg cttaaacacc
     4021 acgccgttgg ccgccgtggt cgtttccggc atatggcccc acattttggc tttgtcgcta
     4081 ttagggctgg tgaccacagt aaaaatagtg tcgatgctgg ccgtcgcgct ggcgttatcg
     4141 tacagcgccg ccgtaatcgc gactttcgtc ccgtgggcat ccgggcgggt gacgttgatg
     4201 attttgctgc cgttttcacc ggtcatgccg ccgattttgg tggcggtgtc gttgagcgaa
     4261 tcgccgtcaa tcactaccgc cgagacgatg ccgtcgccgc ggctgagcac gaacggcgct
     4321 tgcggcagcg gattgccgct ggcgtctttt accgtcactt taagctggag cgtatctccc
     4381 tttttcacct tcaccgcgtg ttcgctgttc tcgtcatacc acaatgacgt attcaccggc
     4441 tcaatggtga tggaggctgc cgtcgggtta tcgctggcaa ggcaactgac gtaatcggat
     4501 gcgccagcgc cgcccggaaa ttcgctaccg ttagaaagcg ctatcagttt ccacgttgtg
     4561 gcgctttgcc aggtggaggt ccagtaatta atcagcaccg gccagccgtg cgtgctattg
     4621 atagccccgt cgcggttagc ggcgtaaagc gcctccagtt gatcggcgcg cggcaatcgg
     4681 ttagcggcgc agccgcccgc cgccgtattg cctaccgcat cggcatgggt agcgcgcgcc
     4741 cagctctcgt tggcctcggt ttgggtgcgg gtcgcggcaa cctccgccgc cagtttcggt
     4801 cgctcaaagg tcatatcgcc caccgtgatg gcgtcggaca tatggcccca catttgcgca
     4861 tccggcgtat cggggctggt gggaacggta aacttcacgc tgcggttaac gggggtggtg
     4921 atcagcgagt taaccggcag tacggtcagc ggcgtcagca agccgacacc ctgcggttgt
     4981 tcaatgacca gcgtggcgtt gcctgcggca tcggtcatgc cctggtacgt catcgacgcc
     5041 agggaagagc cgaaagacgt tccgcccatc accagcgttc cgtcgctggg atcggtaaag
     5101 cccgtggtgg cgttggcgcg atttttaccg tgcgacatgg tgacggtaaa gctggcgttg
     5161 ggcacgctta acccgttcag cgcgttgacg gaatggacgt tcatcgtaat tttttcgccc
     5221 actttggcta ccgcattacg taacgactcg ttgccatcaa agtacacgtc caggctggtc
     5281 accaactcgt taccggagca ggagagatag ttcggttcag cgccgctgaa caggctgtcc
     5341 gcgccggtcg ccaggttaac gtgcgcagtg gtggaaccat cggtatccgc cgcaatatag
     5401 ctatgtttct gtgtcggcca gccgtaagtc gtttccatcg tattgccgga atgggcttca
     5461 tacagcgtat ccagcagcag ttgtcccggc acctggcctg cgccgcactg gtttgtcgct
     5521 gccgtcactg agttaaacgt ggcccagtac tcgttattct caaattcgga accggtatcc
     5581 tgcgcggcct cttccgccag cagcggacgt ttgtaaatat tgcccgcttc caccacgccc
     5641 tgcatatggc cccacatacg ggcctgcgtc acgtccgggc tggtgacgac ggtaaaaatc
     5701 acattctgcg tcgcttccgt gccgtcgaac agcaccacgc gcaccggggt taatacgcca
     5761 gcgcccttgt cctgggtcag cgccagcgaa aactggccgt tggcgtcggt gacgccgtga
     5821 tagtgaccgt cgccgccgtc cagattggcg ataactaccg gttcatccgt ccactgatgc
     5881 gcggcatcaa gatcggcgtt cttctgattc tggcgatttt gctcgtcgcc caggtagaca
     5941 ttaaagtagc gataaggcag cggtttattg gtggcgctgt cggtgacggc gatcttcatg
     6001 ttgatctctt cgcccacctt cactttcgcc gcgttggccg tcgaatcaaa attatcggtg
     6061 ctaatcacta atttcggcgt gaccgcaggc gaggctttat ccacacagct caccagcgat
     6121 tgcgtggcgt ccggcatctg cgtaagggcg cggctgcgca tatcaatgct gatgtggtca
     6181 gttgcgctcg ccccctgtga ggaggaccag tgctcttcgt caccggatgt caccccaccg
     6241 gccagccgag agtggtggct aaatcgccgc gctcgatttt taacccttcc agttggcgcg
     6301 catccggcag aatatcgcag tgtttatccg catggcccca ggtgaactgc gcccagtttt
     6361 cattattgat actggcgacg cggtcttcgc cctcggtttc cgccgccagt ttggggcggt
     6421 caaaagtgta gcttgcgccg tccaccgtgg cggtggaact gtccgccata tggccgtaca
     6481 tgttggcgct gctgctgtcc gggctggtga gggtggtaaa aatcacatcc gcgctggctt
     6541 tcagcgcagg cgcgttcgac gggtgcgcca tcagcggggt tttaacgccc ggcccgttag
     6601 cctgggtgac ggtcaccgtc gccacccctt ccgcgttggt cgtgccgtgg tattcggtgg
     6661 cagtggtggt gagttcggtg ttgccgacgc gtaccggcgc ggtattgttc accacgccct
     6721 ggcggttttg cgcatcgccg cgggtaatca caaacgcgat attgcccgct ggctcaccgt
     6781 tacaaccttt ggtattcacc gtcagcgtga tgctttcgcc cgctttcacc ttcgcggcgt
     6841 taagcgactc atccagatga tcggcggtaa gggttaccgg gtcacccacg gcgggcgcga
     6901 tatccacggc aaacttttgt tcaagcactt cgaccgccgt gttataaggc acgccggtgc
     6961 gggtaagcaa ccacagcggc ggcatagcgg ttgaggtatc cagttgcgac cagactacca
     7021 gatggcggcc tgccatattt tgctcacaga acgtcaggtt tgccgacgat tgtggagaca
     7081 gcggcgtctc cggcgtggcg gcgtcggccc ataccagcgt gacggagggt atccgttcac
     7141 tctgccagac cagcggcggc tcggcgaaaa tatcgccttc ggcatcgcgc ggattggtta
     7201 aggtcagcgc gctgccgaca tcactggtgc tgaactggct gggtttcgcg gaataatcga
     7261 cgggattcgc tgcatcagat cgcaactgaa cgctgccctg ataaaccggg atcgtcacgc
     7321 cgtcagccag cggcggcgtg ccgttaatgg cggcagttga gacgtcaggc tcctgccatg
     7381 gggcgctgct ttgcgccgcc tgggcaaaaa aagcggtaac acaaaacaga catgcctgta
     7441 gcccggataa aagatgggta ttcgttttca gtttcaatgc agcacctgga atacatccct
     7501 ttctgactat tcattccatc ggcggtaaaa atgcgaaacg tttcactacc ggtaccaacg
     7561 acaatttacc gaaacccaac catcccgatc acggctgtac aagacaggcg gcatagccta
     7621 tcgagtaatc gctgctggtg gtcgggcaat gtgttgtgcc ccctttcgct aacgaaaccc
     7681 agcaataatt atacgtccca ggcgtactgc tagcgtaagg caacgaaact gtcggccatc
     7741 cgttagcgac cgccatctgc tcatcgcgta ttttttccag cacgcctttt gccgggaacc
     7801 cggccacccc gccacagttc ttgctcatat cataggtaag accatcggct ttcgtataaa
     7861 ccgaaaccca ggtttcgtta ttttctttcc ggctatccgt cgcgccagca ggcgcttctt
     7921 tcatcaacaa ggggcgatgc agcgtcacgc caccaaccgt cagcgtatcc ggcatatgcc
     7981 cccagtactg cgctttatcg gtatccgggc tggtaatcac gttaaagatc acgcccagcg
     8041 ctgtgttggt tgattgcgtg acatcccccg tcgcgctggc cgtcagctcg gtttttagcc
     8101 ccacactgcc gtcctggttc accgtaaacg ttgccgtccc gtcagccccc gtgacgccgc
     8161 taaacacatt gccggaagcc gtcattgatt tcgttgtcgg cgacggcgtc agttcctgca
     8221 acgtcaaatc gtctgctgta gtattccacg tatatttaat gtcgaggcga tcattcgcat
     8281 cgccccgttt cagggtaaac ggttcattcg ctatgggaac gcccgcgcgg tttttcaccg
     8341 tcaccgtcaa gggaatagcc tcgccttttt tcgccaccgc cgcgcctttc tccgcatcca
     8401 tcgccgtcga ggttagcgta atggaggcag ggacattacg cgcattgacc aaacaggcct
     8461 gcaagctggt ggaggttggc gccgatatct gaccggtttt caggtttatc gcctggtgtg
     8521 ctttcgagct attcagatcg gcagaccacc agagtttacc ggttttcacc ggccagccga
     8581 attgatcctc cagcgcgccg tcaggataca gttgctgtag cgcctttaag tcattcatca
     8641 gcggcatata ctcaacgtcg cacgcagact ggcctgccgt atacgtctgt acgccggtcg
     8701 gcgccgccca tttttcaccg ttcacggtga tgtagttgac gcccgacggc gcttccgcct
     8761 gcaaatgcgg gcgctggtag cggaggccgt ccggcccttc cacggtttcc ggcatatgcc
     8821 cccagtagtt ggcgctggcg acgtccgggc tggtaaggac ggtaaatatc acgtccttac
     8881 tgctcgttgc ggtaatgtca ttcgcaacgg tgacgcggat gggcgtttta agacccatag
     8941 tattattttg cgacacgcta aacgttattt gcccctgggc gtccgtttgc gcatacatat
     9001 atttatccac cgaccccagc aagtacgtcg ccgtaccgga aggctggata ttacttaagg
     9061 taatatcgtc cgcgttgttg gtggtataca cgctccccgc acgcgtcagc gcatcgccgc
     9121 gcgtgatttt caccgtcgcg ttgctaacag gctgcccggc agcgttcgtc accttcaccg
     9181 tcatggggat cgtttcgcct tttttcgcca cggccgccga tttgtccgcg ttccaggcgt
     9241 ccgtagagag cgcgatattc atctggcgcg gtttggtcag gcagagctgg taatagtaat
     9301 tacccggcgt tcccgacatg gagtaatcta tgcccgtact gagatcgata tatcgccagt
     9361 atatgacttg accttgcagc aggctgtcgc ccgcccacca tttcttcctg acgggtaagc
     9421 ctatgtcggt cgtgaccttg ccgctggggt gatcgccgta cagcgccttg agatcatcca
     9481 gcgtggccat ctgatttatc gaacaggcgc cataattact ggtatcaaaa ttattcacta
     9541 taggccagtt ttcatttgtg tcggcatagc tcttcacacc taacgtcgac gccagctcgc
     9601 tatacagcag cgggcgctta aactccgcgc cgttgctggc ggtgaaggtt tccggcatat
     9661 ggccatacat attggcctgc gggctgtccg ggctggtcac ggtggtgaac accaccggca
     9721 gcgtcgaggt taccgtcggc gtgtcggtca gggctgcggt tatcacgttt ttcacccccg
     9781 gccctgcggc ctgcgtcagc gtgaggaccg ccgtgccgtc cgcgccggtg gcaccgtaaa
     9841 tagtgtagcc attatagtag aactgttgcg ccgaaccggt gggcggcgcc agcatcatgt
     9901 tagtgctgcc ggtaaaggta tagctggtgt tgcgcgccgt cccggcgtcg cgtatgaggg
     9961 aaaatggcgt ataaggcacc gggttgcccg ccgcatcggt ggtggtgatc accagcggaa
    10021 tcgagtcgct gttttttgcc ttcaccgcct ggatatcgct atccgtcgcc agcgtagaag
    10081 tgagggtaat ccgcccggcc agaggctgcg gcgtcgcggc gcaaatctgg tattgcctgt
    10141 cgctatcact aatattggga accttccggt gcgcatcatc attcagatcg accgtgtaat
    10201 agtcataggg tggcgcgccg ggggtgattg tcccggcgtt tgtgccgctc cagtaagaac
    10261 ggatgatcgg ccagccctgg gcggttttta tcgctccgtt cgggtatttg ctgtacagag
    10321 aatccagttg ctcaacggac gggaaatacc ccttggagca agcttccgga ctaacggttt
    10381 tggtcgtatt cggcccatag aacaccaccc agcgttcgtt gtcttccggg tactccgcag
    10441 caccggtctt gctggccagt tcatcgtaga gcagcgggcg cttgtacacc gcgctatccg
    10501 cagccgtcag cgacggcgtc atatgccccc acatgcgggc gacgctgaca tccgggctgg
    10561 tgacgacggt aaagatggtg tcgatgctgg cgctcacggc gacattttca tacagcgtgg
    10621 cggtaatggc cgtgcgggtg ccgtgggtgt ccgggcgggt gacgctgatg atgcgggtgc
    10681 catcagggcc ggtctgcgac cccattttgg tggtagtcca ggccagcgat tcgccgtcga
    10741 tcaccacggg cgtcacgata ttttgcaaat cggagccgtc ctgggcggtg tacttttccc
    10801 ctttgcgatc gtagccgtcg ccgcgggtga gcacaaacgg cgcttccggc accggtttgc
    10861 cgctggcgtc cttcaccgtc accttcaact gtagggtatc gccctttttc actttcagcg
    10921 catggacgcc actgccgtcg taccactgcg acggatcgac cggttcaatg gtgatggcgg
    10981 ctggcaccgg gttatcgctg gccagacaac tggtgtaaac cgaggtgttg ctgcccggaa
    11041 attcactgcc gctcgccagc gcgatcagtt tccaggtggt ggcgctctgg taggtggacg
    11101 accagtagtt aattaaggtt ggccagccct gagtcttttt catcgcgccg ccgctgttgg
    11161 cgctgtataa cgcctcaagc tggtcgatac gcggcaggcg gttcgccgcg cagccgcccg
    11221 catccgggtt gcccgccgcg tcgatatggg ccacgcgcgt ccaggtttca ttgctctctt
    11281 cctgagtacg cagcgggcta tttacttcac tcgcaagctt aggccgctca aaagtccagt
    11341 cgccgacggt aagagtgtcg gccatgtggc cccacatttt ggcttttacc gtgtccgggc
    11401 tggtggcgac ggtaaacttg acgctgcggg aaatcggcgt cttgattaat gaatcgacgg
    11461 gcgcgatgct taacggcgtc agtagcccca cgcccttatt ctgggtgagg ataatggtcg
    11521 catcgccgtt ggcgtcggtg atcccgtgat aaacctgccc ggcaaggtag cccacgccgt
    11581 caaactgcat ctcgccgttg ctgggatcgg taaagccggt cgtcaatccg tcgcgccgct
    11641 tgccgttcgc catggtgatg gtgaagtcgg tataggcaat cgccatgtcg ttaagggcgt
    11701 tgcgcgaatg aatattcagc ttaatctgtt cgccgacttt ggcggtcata tcagcatttt
    11761 tagtcgttgg gtcgtcgttg aagtagacgt ccagcaccgc caccatttca ttggccgagc
    11821 aggtcaggta gttcggctga ttggtaaatt tgttgctgtc gccgtttgcc aggttgacgt
    11881 gtaccgttcc cgaggcgtcg ctatccgcgg cgatgaagta gtcttcggtc ggccagccgt
    11941 gttcgatttc catcttgccg ctggggtgct cgctgtataa atgcgccagc gatgactgat
    12001 ccggcacctg gccgacgccg cactgcgcgg tggccgacgc cacggagtta aacgtcgccc
    12061 actcttcgtt gttttcgctg aactgaccgt ctttatggct ggcttccacc gccagcagcg
    12121 ggcgtttata caggttgccg gcatccacca cgccgcgcat atggccccac atgttggcgc
    12181 cgtccacatc cgggctggtt attacggtga aaatgacgct aaagggcagc tcgacgttgc
    12241 cgccttcatc gtccggcatc acgatgcgga tgggcgtctc gccccccatg ccgctgtcgt
    12301 gctgtagcgt caggtgcgcc tgaccgttga cgtcggtcac gccggtatag tgttccggcg
    12361 aagaggcgcg catatcttcg gagctgacgg taacccgctg gttatcccac gcgtcctgat
    12421 gctccccttt gcggtttttc gccgggtcga taaacagctc catgtaacgg taaggcagcg
    12481 gtttttgcgt gtctttatcg actaccgtca tgaccagatc aatcgattcc cccacctgcg
    12541 ccttataagg cccctccgga gagagggtaa tctgcgggtg cgccgcaggc tgggctttat
    12601 ccacacagct aaccagcagc gtatcgctgt tgggcgctct gacgaccgac gcgctgttca
    12661 tatgcacggc agcgtggtag ttgttcatct gatctttggt tgacgaccag tattccgcat
    12721 cgcccgacgc cggccagccg gtgtacgttg ccagcgtact atgcgcatgt cttagcgcca
    12781 ccagttgttc ggcgtccggc agaacgtcgc aatggttatc cgcgccgctc caggtaaact
    12841 gcgcccaggt ttcgttagta tcgttgacgc tttcgtcagc gttacccgcc tccaccgcca
    12901 gcttcggtcg agtgaaagtg taggtcgcgc cgttcagcgt ggcgctggcg ctctccagca
    12961 tgtggccgta catgttggcc tgggcggtgt cggggctggt gatggtggtg aaaataacgt
    13021 ccacgccgtc cgtcagcgta ggataacttt gcgaagcgac gataagatgc gtttttacgc
    13081 cggggccttc atcctgcgtc accaccacag tggctttacc ctcggcatcg gtgacgccgc
    13141 gatactccgt ttgcacggtc gttagctcgg catcgccaac gtgcaccggg ttagtgttat
    13201 tgaccacacc ctgacggttt ttggcatcct cacggcggat gacaaacggc gcatttttca
    13261 ccagtttgcc atcacaccct ctggtcgtga cggtgagggt gatgctctct cctactttca
    13321 cttttgaggc tttaaagctg gcatcaacat gatcgccgct gaccgacacg ggattgccta
    13381 ctgcctgggc aatattgaca gtcactttcg ggctgagcag cgggatggcc gcattattcg
    13441 gcacgccggt gtgagtatag agccacagcg cggggacggt cgtttcatcg tctggctgcg
    13501 gccagacaac cagtttccgt ccggccaggt tctgggcgca aaaggtctgg ttaggcgtcg
    13561 gctgcggcga aagcggcgtg tcgggcgtgg cggcatcggc ccataacagg cccacgctcg
    13621 gcggctgttg attttcccag gcaatggtcg gcggatcgct aaagagatcg ccttcggtat
    13681 cggtggaatt gaccgcacgc atcgaggttg aggtggcatc cgcgctaaaa tcgcgcggca
    13741 tggcggtaaa cgcaacatcg taggttttgg tcgggtcaag cagcatactt ccctgataca
    13801 cgggaataat cgcgccgtcg gcgcggggca cggtgccgtt aactgcggca gtggctgagt
    13861 tcaattcttg ccaggtcccg cctttcagta aggcctgcgc aggcgcgatc gacgctacaa
    13921 acatgatcag taatgtcagt aagaaatgta caactttatt cacttgccga ttcctgtcca
    13981 tgagcgatag ccacccgttt tcattctctg tcgtaattca acccactttg cttagcgcgc
    14041 ggctaagcaa agtgcgcgga aaataccact ccccgcgggg agtggtatgt tgaggacaac
    14101 ttatttgcgt ttgtagtcga tggacagacc aaagccctgg acaccgtcgc tacccacggt
    14161 aacgccgcct tccgcaccct cgaacgcctc tttcgcttcg gcgttggtaa gcgggatgac
    14221 aaggtcttta tcgttccagt tttcgttgac gataccacca gtaccggtac ctgcaatttt
    14281 actggtgccg acgaatttcc agcggtagtc atactggtcg gtaacgtttt caccggcatc
    14341 ataggtgccg ttgccgttct tatcgctcca cagcaatacc tgataggtag tattcgtttt
    14401 gagtgtcgtc cctgaattct tcaacaggtt ggtattcgaa tctttctcat gaataaccac
    14461 atggacgttt tcatccacca ccggaccttc cggaatgtcg tcgccatccg caccaccgcc
    14521 cgcatcggtc gacaggtctt tcaacagcag ttcggttgcc acggcagggt caccggtggt
    14581 ggtggttggc gtgattttga taccgatata atggtctgcg tcacccgcct gaatttcata
    14641 ggtatcgctg cctttggcgc caatctcttc gggattgcta ccattctggt cgctgtatct
    14701 catccactgc accgtcagtt tcgtggcggc gttgtcgaca tccaggtcgc cttccgtatc
    14761 gccaatcgcc cagttgaccg tgaccttatc gccaacgtgg aactgcttat cgccttcggt
    14821 cacaatttta cgatcgccgc gatcgatagt taccgttacg tgatctttgt cggtatccgc
    14881 ggtcttatcc gccgcacggg taatccacgg caccgtaccc tgaatggtgc ccgtctgttc
    14941 agagacaatc tgccactgcc ccgatttcag attaccgttt gccgccaccg ctggcgcggc
    15001 gcaatacccg gcaactacta atgctaaagc gaccttcgtc agccgccgtt ttactgttgc
    15061 ttgcattcag actctctttt ttctcaaaat tcagcggctg gctggtcagc cataacgctg
    15121 acgctatttc tgactatacg taacgcgtat accgtaaccc tgaacgccat cttccacatt
    15181 ggcggcaaac ttctgcgccg cctctttatt ggttactggc agaacaagat cttcatttat
    15241 ggtgttggcc agcgcgccgg tatgtccgtt tgtactctgt ccggtaaact cccactggta
    15301 gtcgtacagg gccatctctt cttccgtgag ctgctcggac atctggaata cgccgtcttt
    15361 attcttgtcg cgccacagca ggaaacggta ggtgttatta accgtaggat gtttatcttc
    15421 tttgccgatc aggttgacag ggttggcggc tttgacctga taaatcaccg cattcagcgc
    15481 gctcaggttg tcgccgataa aagtgacatc aacgtagtta ctgtcgccat aggcgtcttc
    15541 tttcgccttc cagcggaaag tgcccggcag ggtgctggaa agcgtcaccg tccccgcttc
    15601 tttgtcacgg ctggcaataa acacgcaggg ggtttccgtg gtgcagggcg tctgggccag
    15661 cgtgactttt ttatcattgc tgtcgtacaa cacgggcgtc atagcatcgt ccaccagttc
    15721 gttaccattg cgatccgtgg agtcgccaaa ggagtcggtg atcaggagat ccatcaccac
    15781 gccgtcttcg ccatcggcca gcgcgctggc ttcatggctg tgatcgctgc gatcgttatc
    15841 ggcaatgttg tcgacgatca gctcaatttt gcgatcctgc tggacggtga tttccaccac
    15901 gccggagttc tgcttattgc ccttttcgtc ttccagcgtc atgcgtactt tccaggtgtt
    15961 cagggcggtg cgctgcgcct cggtatcggc gttaacccag gcaggaagca ccagattcca
    16021 gctgttattg ttgccttcgg tcagcgcatc cgcttttacc accggcatca ccagagtacg
    16081 ggcggcgttg tttttcgcct gccaggaagc agaaataatt ttgtaatgat ggttaatcag
    16141 cgcgttgacc gtccacttac atttctccag ccccaccgcg gcctcaggcg tatcttcaat
    16201 cacgcattcc gggtgttcgt tggtggcgtc ggccttcagc cacaacgtga cgtccagcgg
    16261 atctttctcg cggtattcga gaatgatgaa attgttacga tcgacaaaat cggtgcggct
    16321 gcccattaaa gagtgctgga ttttaacgtt ttccggatcg agttgcgccg ccagcggcgt
    16381 tcctatctgg tagttcacag tcgctttaac gctaaaatcg ttattatcgc cagtaccggc
    16441 tttgtaatcc gaaccaaccg taaccagcgg taccggcgta tattccagcc ccaaggtaac
    16501 ggcatgagga tctttttgca gattatcggt gccaaacagc gccacttcat cgccgtagta
    16561 ctgttcgtaa actaatttag cgccaagctg cggataaaag ggcagccagc tttccatgcg
    16621 gatatcccaa ccgcgcgcgg gtcgttcttc ataaaagtcg aaatcttcgg aatccttcca
    16681 gtcagaaaga ggatggtaat agttgccgga gaatttcagg taatccgtcc aggcttcggt
    16741 tcccagacct agtcgacggt gaccgcgcgt aaaatcgtag tcatagaatg cgttgccgcc
    16801 aagcagccag ttgccgacgt tctggcgcac gccaagccca aagttaccaa tagtgcggtc
    16861 ttctttacgt tgggctgaga gttggctaaa aagtaaggtt ttttcgttat cataccaggg
    16921 aacgaaataa tccagcgaac tgccgtccag atcgccgcct tcgcctacgg agaggctggt
    16981 acggatcttg ccataaggtg acattacgcc ttcaagatat gactgtgctg atgaagtgat
    17041 ttggttttgc aaatagctac gcgcctagga ttccagcgct tccggggtga gattatcaaa
    17101 gccctgggtg gcggaattaa taaagtagtc agcgccctgt tctttaaagg actttccttt
    17161 attttcctgt tcttcttttt tcgcggattc gctggctaaa tcaggcaggg aggagtggct
    17221 ttcatcgttt gcaggtacag agttacctgc gccggaagcc gcaactgata ctccagacac
    17281 taatagcaaa accagaatgc gaatccttcg caccatatga tatccctgtt gttaaataaa
    17341 cacgctgcta tgagacgata ttatatggat gattcatagg gaatcataac taacaggcct
    17401 aaatatattc ctaaaaagaa aagtttaata tgaaacagac ttataatatt gatataataa
    17461 ataaaaggaa agctgttatt tatttctaat attaattttc gggaataata ttccctataa
    17521 atagttgaat cgata
//
LOCUS       DAJVSD010000076        17421 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.076, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000076 DAJVSD010000000
VERSION     DAJVSD010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 17421)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17421)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17421
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.076"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            72..2063
                     /gene="cirA"
                     /locus_tag="OQP62_002064"
     CDS             72..2063
                     /gene="cirA"
                     /locus_tag="OQP62_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catecholate siderophore receptor CirA"
                     /protein_id="HCS1721617.1"
                     /translation="MFRFNPFVRVGLCMSAVTLAWPVAAATDDGETMVVTASAIEQNL
                     KDAPASISVITQQDLQRRPVQNLKDVLKEVPGVQLTNEGDNRKGVSIRGLDSSYTLIL
                     IDGKRVNSRNAVFRHNDFDLNWIPVDAIERIEVVRGPMSSLYGSDALGGVVNIITKKI
                     GQKWHGSVTVDSTIQEHRDRGDTYNGQFFTSGPLIDGVLGMKAYGSLAKREKDEQQSS
                     ATTATGETPRIEGFTSRDGNVEFAWTPNENHDVTAGYGFDRQDRDSDSLDKNRLERQN
                     YALSHNGRWDLGNSELKFYGEKVENKNPGNSSPITSESNSIDGKYVLPLASVNQFLTF
                     GGEWRHDKLSDAVSLTGGSSTKTSASQYALFLEDEWRIFEPLALTTGIRMDDHETYGD
                     HWSPRAYLVYNATDTLTVKGGWATAFKAPSLLQLSPDWATNSCRGGCRIVGSPDLKPE
                     TSESWELGLYYRGEEGILEGVEASVTTFRNDVDNRISISRTPDVNAAPGYSNFVGFET
                     NSRGQRVPVFRYYNVNKARIQGVETELKVPFNEAWKLSLNYTYNDGRDVSNGGNKPLS
                     DLPFHTANGTLDWKPAQLEDWSFYVSGNYTGRKRADSATAKTPGGYVVWDTGAAWQAT
                     KNVKLRAGVLNVGDKDLKRDDYGYTEDGRRYFMAVDYRF"
     gene            complement(2107..3429)
                     /locus_tag="OQP62_002065"
                     /pseudo
     CDS             complement(2107..3429)
                     /locus_tag="OQP62_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461143.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(3462..4349)
                     /gene="serB"
                     /locus_tag="OQP62_002066"
     CDS             complement(3462..4349)
                     /gene="serB"
                     /locus_tag="OQP62_002066"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HCS1721618.1"
                     /translation="MSIIYFITTQDIDTFQKKLQETLFNAVTMPFPLLFDKRYAALIN
                     TAYLKLTLPAECLTPEFYRYLRELSLQWQFDFFIKPQPLPANGIIAFDMDSTFIAEEG
                     VDEIARELGMSTQITAITQQAMEGKLDFNASFTRRIGMLKGTPKAVLNAVCDRMTLSP
                     GLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFSNTVEIRDNVLTDNITLP
                     IMNAANKKQTLVDLAARLNIATENIIACGDGANDLPMLEHAGTGIAWKAKPVVREKIH
                     HQINYHGFELLLFLIEDEL"
     gene            4566..5933
                     /locus_tag="OQP62_002067"
     CDS             4566..5933
                     /locus_tag="OQP62_002067"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HCS1721619.1"
                     /translation="MESCLDIFKIVIGPSSSRTVGPMRAACHFISLLREQETLPLIRE
                     IEIELYGALSLSRKCHNVDTALYLGLLGCQPENVDLRSHMAVIKRAENENKIELPLSD
                     AGGITIKVKIIANHQAHPGHPYAMTFCARDDYFTVYEETWFSTGAGQVRKHGEPLTPS
                     LPLRTVSPFEFSHAAQLLALCRRNGLSVAALMMKNELCRHSPQTLQNYLAQIWDVMQQ
                     AVYRGLHTEGVLPGPYQVPRRACALHKTLQANRSASDFLTALNWVNAFAIAVSEENAS
                     GGQIVTAPTNGACGIIPAALCWYDKFVTPLEPGALTRFFLTAAAIAMLFKQNASILGS
                     EVGCQGEIGVACSMAAAGLAELMGASVEQTLSAAEIAMEHHLGLTCDPLGGQVQIPCI
                     ERNAISAVKAINAATMAMSRVSEPCISLDEIIAAMYETGKDMSAKYRETYHGSLGKIQ
                     PRKRG"
     gene            5938..6327
                     /locus_tag="OQP62_002068"
     CDS             5938..6327
                     /locus_tag="OQP62_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1721620.1"
                     /translation="MKYNTMNNDEIILSLCARLKETRLSLAMTQQQLADRAHVGIATI
                     KRIEKGGGLNLDTLISLLRALDKLHNLDAVLFESELRNFHESYEGGEGSGRLQVRQQA
                     ADLNNKSSAPQSEEVNYSAALENSLCW"
     gene            complement(6316..7173)
                     /gene="fghA"
                     /locus_tag="OQP62_002069"
     CDS             complement(6316..7173)
                     /gene="fghA"
                     /locus_tag="OQP62_002069"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461139.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HCS1721621.1"
                     /translation="MEMLEEHRCFGGWQQRWRHHAATLNCAMTFSIFLPPTQDNEPPP
                     VLYWLSGLTCNDENFTTKAGAQRIAAELGIVLVMPDTSPRGEQVADDSGYDLGHGAGF
                     YLNATQPPWASHYRMYDYLRDELPALIQTQFNVSDRCAISGHSMGGHGALIMALKNPG
                     KYTSISAFAPIVNPSRVPWGIKALTAYLGEDESAWTEWDSCELMLASQPQDAIPVLID
                     QGDSDQFLADQLQPAVLAEAARQTAWPMTLRIQPGYDHSYYFIASFIEDHLRFHARYL
                     RDEHETSPT"
     gene            7503..8171
                     /gene="folE"
                     /locus_tag="OQP62_002070"
     CDS             7503..8171
                     /gene="folE"
                     /locus_tag="OQP62_002070"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HCS1721622.1"
                     /translation="MPSLSKEAALVHDALVARGLETPLRPPMDELDNETRKSLIAGHM
                     TEIMQLLNLDLSDDSLMETPHRIAKMYVDEIFAGLDYANFPKITLIENKMKVDEMVTV
                     RDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQIL
                     TALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRQEFLRAV
                     RHHP"
     gene            8186..9328
                     /locus_tag="OQP62_002071"
     CDS             8186..9328
                     /locus_tag="OQP62_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF418 family protein"
                     /protein_id="HCS1721623.1"
                     /translation="MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAIVP
                     EDAWSWAILDIVAQAKFLTLFALLFGAGLQMLLPRGKQWIQSRLTLLVLLGFIHALFF
                     WDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGILLYLVGIGVLLLLGVVSSSETSRA
                     WTPDASAILYEKYWKLNGGMEAISNRAEMLSNSLLALGAQYGWQLAGMILLGAALMRS
                     GWLKGQYSLRHYRRTGVLLVALGLMINLPAVILQWRLDWAYRWCAFLLQAPRELSAPL
                     QTLGYAALMFGFWPQLSRCRLTLAIACVGRMALTNYLLQTIICTTLFYQFGLFMKFNR
                     LELLFFVVPVWAINLLFSVIWLRFWRQGPVEWLWRQLTLRASGSLR"
     gene            9478..10500
                     /gene="galS"
                     /locus_tag="OQP62_002072"
     CDS             9478..10500
                     /gene="galS"
                     /locus_tag="OQP62_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator GalS"
                     /protein_id="HCS1721624.1"
                     /translation="MITIRDVARQAGVSVATVSRVLNNSALVSPDTRDAVMQAVTLLG
                     YRPNANAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAE
                     KERHAIEVLIRQRCNALIVHSKALTDRELSDFMDQIPGMVLINRIVPGYAHRCVCLDN
                     VSGARMATRMLLNNGHQRIGYLAFSHRIEDDAMRREGWLHALQEQGVAASESWIGTGT
                     PDMQGGESAMVELLGRNLQLTAVFAYNDNMASGALTALKDNGIAIPLHLSVIGFDDIP
                     IARYTDPQLTTVRYPIASMAKIATELALQGAAGTLDITATHCFMPTLVRRHSVAWRQN
                     AVLITN"
     gene            10999..11997
                     /gene="mglB"
                     /locus_tag="OQP62_002073"
     CDS             10999..11997
                     /gene="mglB"
                     /locus_tag="OQP62_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HCS1721625.1"
                     /translation="MNKKVLTLSAVMASLLFGAHAHAADTRIGVTIYKYDDNFMSVVR
                     KVIEKDGKSAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK
                     ARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGVIQGDLIAKHWQANQGWDLNK
                     DGKIQYVLLKGEPGHPDAEARTTYVVKELNDKGIQTEQLALDTAVWDTAQAKDKMDAW
                     LSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGAMAGT
                     VLNDANNQAKATFDLAKNLAEGKGAADGTSWKIENKIVRVPYVGVDKDNLSEFTQK"
     gene            12131..13649
                     /gene="mglA"
                     /locus_tag="OQP62_002074"
                     /pseudo
     CDS             12131..13649
                     /gene="mglA"
                     /locus_tag="OQP62_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020883197.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     ATP-binding protein MglA"
     gene            13665..14675
                     /gene="mglC"
                     /locus_tag="OQP62_002075"
     CDS             13665..14675
                     /gene="mglC"
                     /locus_tag="OQP62_002075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     permease MglC"
                     /protein_id="HCS1721626.1"
                     /translation="MSALNKKSFLTWLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSN
                     ILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMENANKVFPEMAT
                     MPIALVILIVCAIGAVIGLVNGIIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP
                     ISGFDSGFSTFAQGFVAMGSFRLSYITFYALIAVVFVWVLWNKTRFGKNIFAIGGNPE
                     AAKVSGVNVALNLLMIYALSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGG
                     VSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALDSLKYAR
                     KK"
     gene            complement(14750..15984)
                     /gene="preA"
                     /locus_tag="OQP62_002076"
                     /pseudo
     CDS             complement(14750..15984)
                     /gene="preA"
                     /locus_tag="OQP62_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461132.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreA"
     gene            complement(15978..17219)
                     /locus_tag="OQP62_002077"
     CDS             complement(15978..17219)
                     /locus_tag="OQP62_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HCS1721627.1"
                     /translation="MPQQNYLDELTPGFTPLLAIKEASRCLLCHDAPCSQACPAQTDP
                     GKFIRSIYFRNFKGAAETIRENNALGAVCARVCPTEKLCQRGCTRSGIDKPIDIARLQ
                     RFITDFEQQTAMQIYQPGSKTRGKVAIIGAGPAGLQASVTLTHLGYDVTIYEKQPQPG
                     GWLRHGIPAFRLPQSVLDQEIARIVEMGVNIKCNCDVGGSLSLAQLKAEYRAVLMTVG
                     MSCGSDLPLFEQASHVEIAVDFLQRARQADGDISVPRSALIIGGGDVAMDVASTLKIL
                     GCPSVTCVAREELAEFPASEKEFTSTQALGVSIIDGFTPVAVSGNKVTFHHVRHSGEL
                     TLEAENIILAVGQHARLDNFAEIKAQHNIIDTHNYQTDDPAIFAAGDIVKGDKTVVYA
                     VKTGKEAAQAIHHYLEEACSC"
BASE COUNT         4267 a         4298 c         4635 g         4221 t
ORIGIN      
        1 cgcaggcgaa acgtaatgcg ttgtgagcga taaccgattt ttttgtcgta tttacctcat
       61 ggagaaatgg aatgtttagg tttaaccctt tcgttcgggt agggctttgt atgtccgcag
      121 ttacgttggc ctggccggtt gccgcggcaa cggatgatgg tgaaaccatg gtcgttaccg
      181 cgtccgccat cgaacaaaat ctgaaagatg cgccagcaag tatcagcgtc attacccagc
      241 aagatttaca gcgcaggccc gtgcaaaacc tgaaagatgt cctgaaagag gtgccgggcg
      301 tacagctcac taacgaaggg gataaccgta aaggcgtgag tattcgtggt ctggacagca
      361 gttatacgct gatcctgatc gacggtaagc gcgttaactc ccgtaacgcg gtcttccgcc
      421 ataatgattt tgatctgaac tggataccgg ttgacgctat cgaacgcatt gaagtggtgc
      481 gtggccccat gtcctcgctg tatggctccg atgcgctggg cggcgtggtc aacattatca
      541 ccaaaaaaat tggtcagaaa tggcacggca gcgtcacggt tgactccact attcaggaac
      601 atcgcgaccg tggcgatacc tataacggtc agttctttac cagcggtccg ctgatcgacg
      661 gcgtgctggg aatgaaagcc tacggtagcc tggcgaaacg cgaaaaagac gagcagcaga
      721 gttccgccac caccgctacg ggtgaaacgc cgcgcattga aggatttacc agccgggatg
      781 gaaacgtcga gtttgcctgg acaccaaacg aaaatcatga cgttaccgca ggctacggtt
      841 ttgatcgcca ggaccgggac tccgactcgc tggataaaaa ccgactggaa cggcaaaact
      901 acgcgttgag ccataacgga cgttgggatc tcggcaatag cgagctcaag ttctacggcg
      961 aaaaggtgga aaacaaaaac cccggcaaca gtagccctat cacgtcagaa agcaattcga
     1021 ttgacgggaa atacgttctg ccgttagcgt ctgtcaacca gttcctcacc ttcggcggcg
     1081 aatggcgtca cgataaactg agtgatgcgg tgagcctgac cggcggttcc agtactaaaa
     1141 cctccgccag ccagtacgct ctgttccttg aagatgagtg gcgcatcttc gaaccgctgg
     1201 cgctgaccac cggtattcgt atggatgacc atgaaaccta tggcgatcac tggagcccgc
     1261 gtgcttatct ggtctataac gcaacggata ccctgacggt gaaaggtggg tgggccacgg
     1321 cctttaaagc gccgtcgcta ttgcaattaa gtccggactg ggcgaccaac tcctgccgtg
     1381 gcggatgccg cattgtcggt agcccggatc tgaaacctga aactagtgaa agctgggagc
     1441 tcggccttta ttaccggggc gaagaaggca tactggaggg cgtggaagcg agcgttacca
     1501 cgttccgtaa cgatgtggac aatcgcatca gcattagccg tacccctgac gttaacgccg
     1561 cgcccggcta ttccaacttt gtcggcttcg aaaccaacag tcggggacag cgcgttccgg
     1621 tcttccgtta ttacaacgtg aataaagcac gtattcaggg tgtggaaacc gagttgaaag
     1681 ttccgtttaa cgaggcgtgg aaactgtcgt tgaattacac ctataacgac ggacgcgatg
     1741 tcagtaatgg cgggaacaag ccgctttccg atctgccgtt ccacaccgcg aacggtacgc
     1801 ttgactggaa accggcgcag cttgaagact ggtcattcta cgtatcaggg aattataccg
     1861 gacgtaagcg ggccgacagc gcaacggcga aaacgccggg cgggtacgtg gtctgggata
     1921 ccggcgcggc atggcaggcg acgaaaaacg ttaaactgcg tgcgggcgtt ctgaacgtgg
     1981 gcgataaaga tctcaaacgc gacgactacg gttataccga agacggacgt cgttacttta
     2041 tggcggtgga ttaccgtttc tgacagagac tggcgacagc cgcgttttgc cgctgtcgcc
     2101 agaatgttat aaccgatgca gcctggagag cagcgccagc gacagagtcg ttagcagaat
     2161 ggcgattaac gcatagatat aaacgcccga ccacgcccag ctatttttca ccataattac
     2221 cggcacaccg gccattgccg cgccgacata gctgaacaat ccccgaaagc cggtaatcga
     2281 tcccgccgca tccttatggg tcacatccag acagccgacg gcaaaaagca tatgcggtcc
     2341 gtataaggcg aagcccatga tggtgaacag aatcgcgctg agggtgtaag aggtatcctg
     2401 aaccagcggc accagcacga tgcatatgca cagcgctaac gcgaagatta acccggtcat
     2461 ccagcggtta cttttgaaca taaagtcaga caagtagcct gccagcaacc cacctgccag
     2521 tccgcccgcc tcaaatcagg aaataatcga gttcgctttt atcagactcc agccgtgaac
     2581 ctgcgaatag taaatctgcg gccagtcgtt aagaatagtg cgcgcaatat aaaccgacat
     2641 atcaccgata ataatgatcc ataccagtgg attggtcagg atatatttca caaaaatctg
     2701 ccagaagctc aggttgaccg ggctggcctt gacctgggcc agttccgtcg ggtcgttacg
     2761 ccactgcccc acgttgggca aacctaacgt accgggacga tctttaatgg taaatagcgc
     2821 cactatcccc atcagcagcg aaatggcgcc gggaacataa aatcccattt tccagctacc
     2881 gctaaaggcg atagcaaaac tggtcagcag cggcgcgagg ctgccgccga tattgtgcgc
     2941 cgcttcaacg atagcccacc agcgtccccg ttcgtttttc gaaaaccacg aggccataat
     3001 tttcgccatc ggcggaaagc tggtgccctg taatatcgcg ttgagactgt acagcacgta
     3061 gaatgccgcc acgctgtcgg aaaagccgaa cagaatattt acaatcccca cgccaatcag
     3121 caccgggccg gtcatggctt tcgggttaat tttatcgacc agcatcccgc cgacaaactt
     3181 catcgcgcca taaagaatgt aaaaaataga agacataatg gcgaagtctt ctgcggtcag
     3241 cgacgtttcc gtcagcatgg ccggcatcgc ggcggagaag tttttacggg taagataaaa
     3301 gacggcataa gagataaaga ccgaggcgat aatctcaaaa cgaaattttt tataggtctg
     3361 gtctatctct tttttctctt ttacaatcgg cttatcgggc tggctgaaaa taaatgtttt
     3421 tatactcatt ttaaaattcc cttccggcga ggtgagtcgc gttataattc atcttcaata
     3481 agaaaaagaa gcaattcgaa accgtgataa ttaatctgat ggtggatttt ttcccgtaca
     3541 accggcttcg ctttccaggc aataccggtg ccagcatgtt ctaacatcgg cagatcgttg
     3601 gcgccatcac cgcaggcaat aatattctcc gtggcaatat ttaaccgggc agccaggtca
     3661 accagcgtct gttttttgtt tgcggcgttc ataatcggca aggtaatgtt atccgtcaga
     3721 acgttatcgc gtatttcaac cgtattcgaa aaggcataat ccagttgata ccgcgctttt
     3781 agacgctggg tgaatatatc cagtcccccg gagataatcg cggttttaaa tcctttggcc
     3841 ttgatgactg gcagaatagt taacaggcct ggcgaaaggg tcatgcgatc gcatacggcg
     3901 ttcagcactg ctttcggtgt gcctttcaac attccgatac gtcgggtaaa actggcgtta
     3961 aaatcaagct tgccctccat cgcctgttgg gtaatggcgg tgatttgcgt cgacatgcca
     4021 agctcgcggg caatttcatc cacgccttct tccgcaataa atgtcgagtc catatcaaac
     4081 gcgataatac cgttagcagg cagtggctgc ggcttaataa aaaaatcaaa ctgccattgc
     4141 aatgagagtt cgcgtaaata gcgataaaat tcaggcgtca gacattccgc tggcagcgta
     4201 agctttaaat aagcggtatt gataagcgcg gcataacgtt tatcaaataa tagcggaaac
     4261 ggcatggtga cggcattaaa taacgtttcc tgtaattttt tctgaaacgt atcgatatcc
     4321 tgtgtagtaa taaaataaat aatgctcata tgataactcc cttaatttac gggtattata
     4381 atggctcttt tgcggcgtgg aatctcgtgc tatcacagat atcacagcca gaaaagggct
     4441 aaaaaagcgt tgtttttgat accaggtaaa gttcagacac aaaaggtatc acttttgata
     4501 tgccaactgt gcgaggatgt tatttattac tgaacgcgaa tgagactgaa aggattgata
     4561 taacgatgga gagttgcctt gatatattca aaatagtaat aggtccatcc agctcacgta
     4621 ccgtagggcc gatgcgcgcc gcctgtcact ttatttcatt gctcagagaa caagagacgt
     4681 tgccgctaat tcgggaaatt gaaatcgagc tgtatggcgc gttatcgtta agccgcaagt
     4741 gccacaatgt ggataccgcc ctgtatcttg ggctgctggg ttgccagccg gagaatgtcg
     4801 atctccgttc gcatatggcg gtgattaagc gtgcggaaaa tgaaaacaaa atcgaactcc
     4861 cgctctctga cgcgggcgga atcacgataa aagtcaagat tatcgccaat caccaggcgc
     4921 atccaggcca tccttatgcc atgacgtttt gcgccaggga tgattatttt acggtgtatg
     4981 aagagacctg gttttctacc ggcgccgggc aggttcgtaa acatggcgag ccgctgacgc
     5041 catcgcttcc tttgcgtaca gtgtcgccct ttgaatttag tcatgccgcg cagttgctgg
     5101 cgctgtgtcg gcgtaacggc ctgtccgtgg cggcgctgat gatgaaaaat gagctgtgcc
     5161 gccactcgcc acagacgttg cagaattatc tggcgcaaat atgggacgtg atgcagcagg
     5221 cggtttatcg cggcctgcat actgaggggg tattacccgg tccctatcag gtaccgcggc
     5281 gcgcctgtgc gttacataag acgttacagg ctaaccgctc cgccagcgat tttttaaccg
     5341 cgctgaactg ggtcaatgcc ttcgcgattg cggtaagcga agaaaatgcc agcggcggac
     5401 agattgttac cgcgccaacc aatggcgcgt gcggcatcat tccggcagcg ctctgctggt
     5461 atgataaatt tgtcacgccg ctggagcccg gtgctctgac ccgtttcttc ctgaccgccg
     5521 ccgctatcgc gatgctgttt aaacaaaacg cctctattct gggatctgaa gttggctgtc
     5581 agggggaaat cggcgtggcg tgctcaatgg cggcggcggg cctggctgaa ctgatgggtg
     5641 catccgtgga gcaaacgctg agcgccgctg aaattgccat ggaacatcat ctgggattga
     5701 cctgcgatcc gctgggcggg caggtacaaa ttccctgcat agagagaaat gccatctctg
     5761 ccgtgaaagc gataaacgcg gcgacgatgg cgatgagtcg cgtaagcgaa ccctgtattt
     5821 cgctcgatga gatcattgct gcgatgtacg agaccggtaa agacatgagc gctaaatacc
     5881 gtgaaacgta tcatggttcg ctggggaaaa ttcagccgcg caagagaggg taacagcgtg
     5941 aaatacaata cgatgaataa cgatgagatt atcctgtcgt tgtgcgcccg cttaaaggag
     6001 acgcgtctgt ctcttgcgat gacccagcag cagcttgccg atcgcgcgca cgttggcatt
     6061 gccaccatca agcgtatcga gaagggggga gggctcaatc ttgatacgct aatttctctc
     6121 ctgcgggcgc tggataagtt gcataatctt gatgcggtgc tgtttgaatc cgaactgcgt
     6181 aattttcacg aaagttatga aggcggagag ggcagcggcc gccttcaggt acgccagcag
     6241 gccgcggatt taaataataa atcttccgcg ccgcagtcgg aggaggtgaa ctacagcgcg
     6301 gcgctggaaa attcattatg ttggtgacgt ctcatgctcg tcccgtaaat accgggcatg
     6361 aaagcgcaga tggtcctcaa tgaaggacgc aataaaataa tagctatgat cgtaaccggg
     6421 ctggattcgt agcgtcatcg gccaggcggt ttgccgcgcg gcttccgcca gtacggcggg
     6481 ctgaagctga tcggcgagga attgatcgct gtcaccctga tcgatgagca caggaatggc
     6541 gtcctgcggc tggctggcca gcattaattc gcagctatcc cactcagtcc aggctgattc
     6601 atcttcgccg agataagcgg taagcgcttt gattccccac ggcacgcggc tggggttgac
     6661 gatgggcgca aaagcagaga tgctggtgta tttgcccgga tttttcagcg ccatgattaa
     6721 cgcgccgtgg ccgcccatcg agtgcccgct gatggcgcaa cggtcgctga cgttaaactg
     6781 tgtctggata agcgccggaa gctcatcgcg caggtaatcg tacatgcgat aatggctggc
     6841 ccagggcggc tgtgtggcat tgagataaaa cccggcgccg tggcctaaat cgtatccgct
     6901 atcgtcggcg acctgttcac cgcgtggact ggtatccggc atcaccaata caatgcccag
     6961 ttctgctgcg atacgctgcg cgcctgcttt ggtggtaaaa ttctcatcat tgcaggtcaa
     7021 cccggacaac cagtacagta ccggaggcgg ttcattatcc tgagtcggcg gaagaaaaat
     7081 gctgaatgtc atggcgcagt ttagcgtggc ggcatgatga cgccagcgct gctgccagcc
     7141 gccaaaacat cggtgctctt cgagcatttc catgcggggg ctccttttat agtgaacctg
     7201 ataaggtatg cagattcttc ataatacaga ttattcaccg cgttgtgagt aactttcact
     7261 tccgtaatac ataaacatgc ttcatcattt aaataacgtt gcgttaacaa atatgccctt
     7321 tgtcctgcca gcattctcgc accggaaaag atgtcatgaa aggcagcgac aatttcaaca
     7381 attatgggcg tgaatactgg attatgtgcg ctacctcacg cacaataatc acactgtcac
     7441 aatattgaca aactttgccc catgcagggc agaggcgcca cacctgcagg agaacacgat
     7501 taatgccatc actcagtaaa gaagcggccc tggttcatga cgcgctggtt gcccgggggc
     7561 tggaaacgcc gctgcgcccg cctatggatg aactggataa tgaaacgcga aaaagcctta
     7621 tcgcagggca tatgactgag attatgcagt tgctgaatct cgatttgagc gatgacagtc
     7681 tgatggaaac gccgcatcgt atcgctaaga tgtacgttga cgagattttt gctggcctcg
     7741 actatgctaa tttcccgaaa attaccctca ttgaaaataa aatgaaggtg gatgaaatgg
     7801 tcaccgtccg cgatatcacg ctgaccagca cctgtgaaca tcacttcgtg accattgatg
     7861 gcaaagcgac cgtcgcgtat atccccaaag attccgtgat cggcctgtcg aaaattaacc
     7921 gcatcgtgca attcttcgcc cagcgtccgc aggttcagga acgtttgacc caacaaattc
     7981 tgacggcgct gcaaaccttg ctcggcacca ataatgtagc ggtatcgatt gatgcggtgc
     8041 attactgcgt gaaagcgcgc ggtattcgtg acgcaaccag cgccacgacg acgacgtcgc
     8101 tgggcggatt gtttaagtcc agccagaata cgcgccagga gtttctgcgt gccgttcgcc
     8161 atcatccatg attaaggcgg agacgatgga gcgtaatgtc acgctggatt ttgtacgtgg
     8221 cgtcgctatc ctcggtatcc tgcttcttaa cattagcgcc tttggattgc cgaaggcggc
     8281 ttatctcaat cccgcctggt acggcgcgat cgttcccgaa gacgcctggt cctgggcgat
     8341 tctcgatatt gtggcgcagg ctaagtttct tacgctgttc gcgttgttgt ttggcgcggg
     8401 gctacaaatg ctgcttccgc gtggtaaaca gtggattcag tcgcgcttaa cgctattggt
     8461 actgttaggt tttatccatg cgttattctt ttgggacggc gacattctgc tggcctacgg
     8521 tctggtcgga ttaatttgct ggcgactggt acgcgacgcg ccttcggtaa aaagcctgtt
     8581 caataccggc atactccttt atctggtcgg gattggcgta ctactgctgc tgggtgtggt
     8641 atcgagtagc gaaaccagcc gcgcctggac gccggatgcg tcggcaatat tgtatgaaaa
     8701 atactggaag ctgaacggcg gcatggaggc tatcagcaac cgggcagaga tgctgtcaaa
     8761 tagtttactg gcgctcggcg cgcagtatgg ctggcaactg gcaggtatga tactgctggg
     8821 cgccgcgcta atgcgtagcg gctggctgaa aggccagtac agtctgcggc actatcgccg
     8881 taccggggtt ctgctggtgg cgttagggct aatgatcaac ctgcctgcgg tcattttaca
     8941 atggcggctg gactgggcgt accgctggtg cgccttctta ttgcaggcgc cgcgcgaact
     9001 gagcgcgccg ttgcaaacgc tgggctatgc cgcgctgatg tttggcttct ggccgcagct
     9061 tagccgatgc agactgacgc ttgccattgc ctgcgtaggg cgaatggcgc tgaccaatta
     9121 tttgctgcag acgatcatct gtaccacgct gttttatcag tttggcttat ttatgaaatt
     9181 caatcgactg gaactcttgt tctttgtcgt tccggtatgg gcaataaacc ttctcttttc
     9241 cgtcatctgg ctacgtttct ggcgacaggg accggtcgag tggttatggc gtcaactcac
     9301 gttgcgcgcg tcaggatcgc tcagataacg atctggatca cattcattaa caaaatggct
     9361 gtaaccgttt ccatccctgt gatgtttctc acgcagccct gggcagggtg ctgacaaaat
     9421 agccgcctgc taacggggca tttgtgagca tttttgaact caaacagggc agtgaatatg
     9481 atcaccattc gtgatgtagc gcgccaggct ggcgtgtctg tagcgaccgt ttcccgcgta
     9541 ctgaataaca gcgcgttggt cagtcccgac acccgtgacg ccgttatgca ggccgtcacc
     9601 ctgctgggat atcggccaaa tgcgaatgcg caagcgctgg ccactcaggt gagcgatacc
     9661 atcggcgtcg tagtcatgga tgtttccgat gcctttttcg gcgctctggt gaaagccgta
     9721 gatctggtcg cgcagcagca ccagaaatat gttctcattg gcaacagtta tcatgaggcg
     9781 gaaaaagagc gccatgcgat tgaagtcttg atccgtcagc gttgtaacgc attgattgtt
     9841 cactcaaaag ccttaaccga tcgcgagctg agcgacttta tggatcagat ccccggtatg
     9901 gtgctgatta accgtatcgt gccgggttat gcgcatcgtt gtgtctgtct cgacaatgtg
     9961 agcggcgcca gaatggcgac ccgaatgttg ctgaataatg gacatcaacg catcggctac
    10021 ctggccttca gccaccgtat tgaagatgac gcgatgcgca gagaagggtg gttacacgcg
    10081 ctgcaagagc agggggttgc tgcgtcggag agctggattg gcaccggcac gccggatatg
    10141 cagggcggcg agtcggcaat ggttgagttg ctgggacgca atctgcaact gacggcggta
    10201 tttgcctata acgataacat ggcgtcgggc gcgctgacgg cgttaaaaga taacggcatc
    10261 gccattccct tgcatctgtc tgtcatcggt ttcgatgata tccctattgc tcgttatacc
    10321 gatcctcagt tgactaccgt gcgctatcct attgcttcta tggcgaaaat cgcgaccgag
    10381 ctggcgttac agggggccgc aggcacgctg gatatcacgg cgacgcactg cttcatgccg
    10441 acgctggtac ggcgccattc ggtggcgtgg cgacagaatg cggtactgat cactaactga
    10501 ttacgccccg catgtaaccg ttttcaatct gtgagtaaat tcacagttta ttaacattgt
    10561 gatagctatg atgacaacgt ttgtcgcact gtaactaatg tgtaacagtt agttgttagt
    10621 tttgctgggg tatttcgctt ataaaaacca ttatcacaat atcccgcgac taccggacaa
    10681 aaataaagag ttgaataaga gcttatccca ttagggctat tttacttgcc attttggacc
    10741 tgggcagtgc tcgccaaaac gcgttagcgt tttgaacgcc gctagcagcg gcccgaaggg
    10801 cgagcgtagc gagtcaaacc tcacgtacta cgtgtacgct ccggtttttg cgcgctgtcc
    10861 gtgtccaaac tggctgcgcc aataacgcct ggtgggatag gctctaaata cgcttcggcg
    10921 ttcagtaaca tgcgttaacg tgctgaacag ccgggcattt ttttacgcta taccctacat
    10981 aataaaaccg gagctaccat gaataagaag gtactgaccc tttctgccgt gatggcaagt
    11041 ctgttattcg gcgcgcacgc acacgcggct gatactcgta ttggcgtgac gatttataaa
    11101 tatgacgata actttatgtc cgtggtgcgt aaggttattg aaaaagatgg caaatccgcg
    11161 ccggatgttc agctactgat gaatgactcg caaaacgatc aatctaaaca gaatgatcaa
    11221 attgacgttt tattggcgaa aggggttaaa gctctggcga ttaacctggt cgacccggca
    11281 gccgccggta cggtgattga gaaagcgcgc gggcaaaatg tgccggtggt gttctttaac
    11341 aaagagcctt cccgcaaagc gctggacagc tatgacaagg cgtattatgt cgggactgac
    11401 tctaaagaat ccggtgtgat tcagggcgac ttgattgcca aacactggca ggcgaatcag
    11461 ggttgggatc tgaataaaga cggtaaaatt cagtatgttc tgctgaaagg cgagccgggg
    11521 cacccggatg ctgaagcccg tacgacgtat gtggtgaaag agttaaatga taaaggtatt
    11581 cagaccgagc aactggcgtt agacaccgct gtgtgggata ccgcgcaggc aaaagataag
    11641 atggatgcct ggctgtctgg cccgaacgct aacaagattg aggtggttat cgcgaataac
    11701 gatgcgatgg cgatgggcgc ggtagaggcg ctgaaagcgc ataataaatc gtcgattccg
    11761 gtctttggcg tcgatgcgtt accggaagct ttggcgctgg tgaaatcggg cgcgatggcc
    11821 ggtacggtac tgaatgacgc caacaatcag gcgaaagcga cattcgatct ggcgaaaaac
    11881 ctcgccgaag gcaagggcgc ggctgacggc accagctgga agattgagaa caaaatcgtg
    11941 cgcgtgcctt atgtcggcgt ggacaaagac aatctgagcg aatttaccca aaaataactt
    12001 ttccgtctgt gggcgcaatt ttgttgcgcc ctgaaaccgt ggaagggtga cgtgccgcag
    12061 accggataac gtatttcttt tgccatccgg cgcggatagt cataattaaa aaggccgaca
    12121 gggtatcatt atgggcagca cgatctctcc gtcgtcgggt gaatatttgt tggaaatgcg
    12181 tggcattaac aaatcatttc ccggcgtgaa agcgcttgat aatgtcaact taaacgttcg
    12241 tccgcactct attcatgcat taatgggcga aaacggcgca ggcaaatcaa cattattaaa
    12301 atgtcttttc ggtatttatc aaaaagactc cggcagcatt gtatttcagg gaaaagaagt
    12361 ggacttccat tcggcgaaag aagcgctgga gaatgggatt tcgatggtac accaggagtt
    12421 aaacctggta ttacaacgtt cggtcatgga taacatgtgg ctggggcgtt atcccaccaa
    12481 aggtatgttt gtcgaccagg ataaaatgta ccaggatacc aaagcgatat ttgatgagct
    12541 ggatatcgat attgacccgc gcgcgcgtgg gaacgttatc cgtttcgcaa atgcagatga
    12601 ttgaaattgc gaaggcgttt tcctataacg ctaagatcgt tattatggat gaaccgacct
    12661 catcgttaac tgagaaagag gttaatcatc tgttcaccat tattcgcaag ctgaaagaac
    12721 gcggctgcgg cattgtttat atctcgcata aaatggaaga aatttttcaa ttgtgcgatg
    12781 aaattactat cttgcgcgac ggtcagtgga ttgccaccca gccgctggaa gggctggata
    12841 tggataagat cattgcgatg atggtcgggc gttccctgaa ccagcgcttt ccggataaag
    12901 aaaataagcc gggcgacgtg attctggagg ttcgtcacct gacctcgctg cgccagcctt
    12961 ccattcgcga tgtctccttt gatttgcaca agggcgaaat tctgggcatt gccggtctgg
    13021 ttggggcaaa gcgtaccgat atcgtcgaaa cgctgtttgg cattcgtgag aagtcgtccg
    13081 ggacaatcac tttacatggc aagaaaatta ataatcacac tgcgaacgaa gcgattaacc
    13141 acggttttgc gctggtgacg gaagagcgtc gttccaccgg aatttacgcc tatctggata
    13201 tcggatttaa ctcattaatt tcgaatatcc gtaattataa aaataaagtg gggttactgg
    13261 ataattcccg gatgaaaagc gacacccaat gggtcattga ttccatgcgg gtaaaaacgc
    13321 cggggcatcg cgcgcaaatt ggttcacttt ccggcggcaa tcagcaaaag gtgatcattg
    13381 gtcgctggct attaacgcag ccggaaatat taatgctgga cgaaccgacc cgcggcattg
    13441 atgtcggcgc aaaatttgaa atttatcagc ttattgcgga actggcgaaa aaaggcaagg
    13501 ggatcatcat tatatcttct gaaatgccgg agctgttagg gattaccgat cgtatcctgg
    13561 tgatgagtaa cggtctcgtt tccggcattg tcgatactaa aacaacaacg caaaacgaaa
    13621 ttttgcgtct tgcttctttg cacctttaag atcaggggct ccttatgagt gcgttaaaca
    13681 agaaaagctt tttgacctgg ctgaaagagg gcggaattta cgtcgttctt ttagtgctgc
    13741 tggcgattat tattttccag gacccgactt ttttaagttt gctgaattta agtaatattc
    13801 tgacgcaatc ttcggtacgt attattatcg cgctgggcgt ggcgggactc atcgtcaccc
    13861 aggggacaga cctgtcggcg gggcgtcagg tagggctggc ggcggttgtg gcggcaacat
    13921 tactgcaatc aatggaaaac gccaacaaag tgtttccgga aatggcgacc atgccgattg
    13981 cgctggtcat cctgattgtc tgcgcgattg gcgcggtgat tggcctggtg aacggcatca
    14041 tcattgctta cctgaacgtg acgccgttta ttaccacgct tggcacgatg attatcgttt
    14101 atggaatcaa ctccctttac tatgactttg tcggcgcttc gcccatttcc ggctttgaca
    14161 gcggcttttc cacctttgcg cagggctttg tggcgatggg cagtttccgg ctctcctaca
    14221 tcacctttta cgctctgatt gcggtagtgt ttgtctgggt gctgtggaat aagacccgct
    14281 ttggtaaaaa catttttgct attggcggca acccggaagc ggcgaaagtt tctggcgtaa
    14341 acgtggcgct gaacctgctg atgatttatg cgctctccgg cgtgttttat gccttcggcg
    14401 gcttactgga agcagggcgt attggttctg ccaccaacaa cctcggcttt atgtatgaac
    14461 tggatgcgat tgccgcgtgc gtggtcgggg gcgtatcgtt tagcggcgga gtggggacgg
    14521 tcttcggcgt ggtgaccggc gtcattatct ttaccgtcat caactatggc ctgacctata
    14581 tcggggtaaa cccgtactgg cagtacatta tcaaaggcgg cattatcatt ttcgccgtgg
    14641 cgctggactc gctgaaatac gcgcgtaaga agtagttatc cagacgtatt accttgctta
    14701 tcagataacc cggcgcagcg aaactgcgcg ccgggcttca taccgtgagc tacagcgtta
    14761 acgcgtgttc tttttcgcct tttttaaatt tgacctcgcc taaatcaata caggcgaccg
    14821 ggcagacatg accgcacagc agacaaccga cgcatttttc cgtattgcaa tgcggcgtgt
    14881 ggctgtgttc atcccactcc atcgcctgat gaccgccgtc atagcaggag atatagcaac
    14941 gtccgcagcc gacgcatttc tcctgattaa tccgcggata gacgatatag ctgcgatcca
    15001 ggtcttccgc cgggataata ttgccattcg ccagcccgat catctcctgt aatgaggcaa
    15061 atccctgatc ggccagatag tggctgaggc cgctcgccat atcttctaca atgcggtaac
    15121 cgtattgcat aatgcctgtc gtcacctgta gggtcgccgc gcccagcagc agaaattcgg
    15181 cagcgtcttc ccaggtttca atgccgccga taccgctaat cgggaaatcg cgcagttcag
    15241 ggtgcattcg caactgctgg ataaaacgca gcgcaatggg tttcaccgct tttcctgaat
    15301 aaccggagat gctggattta ccgttaacca ccggcatccc gattttgcgg ttcaggtcga
    15361 tgttagtaat ggatttcacg gtgttgatgg tggcgatacc gtcggccccg ccgcgtttgg
    15421 cggccagcgc gacttcacac atatcgccaa tattcggcgt cattttcgcc agcattggca
    15481 aagatgaacc gcgttttacg gcgcggcagt atttttcaac cagttccggg ctttgcccta
    15541 catcgcttcc catggcgtgc gaggtcatct gcgggcaaga gaagttacac tcaatcatat
    15601 ccgcgccggc ttcttcaacc agacgcgcca gttcctgcca ctgctgctca ttttccccca
    15661 tgatggaagc aatcagcacc ttatccggat aatcctgttt tagccgtcga atggcggcca
    15721 gattctcttc cagcggatgc tcagcaattt gctccatgtt tttgaaacca ataaaaccgg
    15781 tatcttcttt cgtcaggtgg tcaaaacgtg gagagacttc gttggcaata aaaaaccaat
    15841 ggttttaaaa acgatcccgc cccagccggt atcataggct ttggcgcaca tctcataaca
    15901 attgcctacc ggagaagaag aaaggcaaaa cggattggga aacttaacgc cgcaaaaggt
    15961 aacagacaaa tcttttgtta acatgagcag gcctcctcta aataatgatg aatagcctga
    16021 gcggcttctt ttccggtttt taccgcataa acgacggtct tatcaccttt aacaatatcg
    16081 ccagcggcaa agatcgccgg gtcgtcggtt tgataattgt gcgtgtcgat aatattatgc
    16141 tgcgctttta tctccgcaaa gttatccagt cgcgcgtgct gccccacggc caaaataata
    16201 ttttccgctt ccagcgtcag ttctcctgag tggcgtacat ggtggaaggt cactttattt
    16261 ccgctgacgg cgacaggcgt aaaaccatca ataatcgata cgcctaatgc ctgcgtgctg
    16321 gtaaattctt tttcgctggc ggggaattcg gctaattctt cccgcgccac gcaggtgacg
    16381 gaaggacagc cgagaatttt taacgtactg gcgacatcca tcgctacgtc gccgccgcca
    16441 ataattaatg cgctacgcgg aacgctaata tcgccgtcgg cctgacgggc gcgctgtaaa
    16501 aaatcaacgg caatctctac gtgactggct tgctcaaata acggtaaatc agagccacag
    16561 gacatcccga cggtcatcag cacggcgcga tattcggctt tgagttgcgc aagcgatagc
    16621 gacccgccca cgtcacaatt acatttaata ttgacgccca tttctacaat gcgggcaatt
    16681 tcctgatcga gtacgctttg cggcagacga aatgccggga tgccgtgacg cagccatccg
    16741 ccgggctgcg gctgtttttc gtaaatggtg acgtcatagc ctaaatgtgt gagcgtcacg
    16801 cttgcctgca aacctgccgg acccgcgcca ataatcgcga ctttcccgcg tgttttactc
    16861 ccgggctgat aaatctgcat ggcagtctgc tgttcaaaat cggtaataaa acgttgcagg
    16921 cgtgcaatat caataggttt atctattccg gaacgtgtac atccgcgctg gcataatttt
    16981 tccgtcggac agactctggc gcagacggcg ccaagcgcat tattttcccg gatagtttcc
    17041 gctgcgcctt taaaattgcg aaagtaaata gaacgaataa atttccccgg atcggtttgc
    17101 gccgggcaag cctgactaca gggcgcatcg tgacataata aacaacggga agcctctttt
    17161 attgccagta atggcgtaaa accaggcgtg agttcatcca gataattttg ttgcggcata
    17221 taatcttcct taatgcttga ataaattaag gcgaaacgca aataacgcgt tttaatgatc
    17281 taaaatctac cgccagccta agcattgaaa gaagggcatt ctgtgaaaga attcacaaaa
    17341 aaatgaaacc agaatgcaaa acagcatttg ttccttatat cataataata actattctca
    17401 attttaaagg gataataaat a
//
LOCUS       DAJVSD010000077        17322 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.077, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000077 DAJVSD010000000
VERSION     DAJVSD010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 17322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17322
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.077"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(85..816)
                     /gene="rlmB"
                     /locus_tag="OQP62_002078"
     CDS             complement(85..816)
                     /gene="rlmB"
                     /locus_tag="OQP62_002078"
                     /EC_number="2.1.1.185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HCS1721628.1"
                     /translation="MSEMIYGIHAVQALLERAPERFQEAFILKGREDKRLLPLIHALE
                     SQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDG
                     VTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLART
                     MRMLQEENIWIVGTAGEADHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPM
                     AGSVSSLNVSVATGICLFEAVRQRT"
     gene            complement(907..3345)
                     /gene="rnr"
                     /locus_tag="OQP62_002079"
     CDS             complement(907..3345)
                     /gene="rnr"
                     /locus_tag="OQP62_002079"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HCS1721629.1"
                     /translation="MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASREELAVEL
                     NIEGEEQLEALRRRLRAMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVE
                     GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDA
                     GVGFVVPDDSRLSFDILIPPEDVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNM
                     GTGMAVDMALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDA
                     RDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLP
                     EVLSNGLCSLNPQVDRLCMVCEMTISAKGRLTGYKFYEAVMSSHARLTYTKVWHMLQG
                     DQDLREQYAPLVKHIEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQT
                     QRNDAHKLIEECMIMANISAARFVEKAKEPALFRIHDKPTTEAITSFRSVLAELGLEL
                     PGGNKPEPRDYAELLESIADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHF
                     TSPIRRYPDLSLHRAIKYLLAKEQGNKGNTTETGGYHYSMEEMLQLGQHCSMAERRAD
                     EATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFFVRLDELFIDGLVHVSSLDNDYY
                     RFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTARE
                     KAKKGESKNAGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAA
                     ATKAKRAAKKKAAE"
     gene            complement(3383..3808)
                     /gene="nsrR"
                     /locus_tag="OQP62_002080"
     CDS             complement(3383..3808)
                     /gene="nsrR"
                     /locus_tag="OQP62_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide-sensing transcriptional repressor
                     NsrR"
                     /protein_id="HCS1721630.1"
                     /translation="MQLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYDVSRNHMVK
                     IINQLSRAGFVTAVRGKNGGIRLGKPANTICIGDVVRELEPLSLVNCSSEFCHITPAC
                     RLKQALSKAVQSFLKELDNYTLADLVEENQPLYKLLLVE"
     gene            complement(4028..5326)
                     /gene="purA"
                     /locus_tag="OQP62_002081"
     CDS             complement(4028..5326)
                     /gene="purA"
                     /locus_tag="OQP62_002081"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019842885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HCS1721631.1"
                     /translation="MGNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTL
                     VINGEKTVLHLIPSGILRENVTSIIGNGVVLSPSALMKEMKELEDRGIPVRERLLLSE
                     ACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAE
                     KLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDF
                     VMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGA
                     GPFPTELFDETGEFLCKQGNEYGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLD
                     VLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGL
                     PQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA"
     gene            complement(5429..5626)
                     /locus_tag="OQP62_002082"
     CDS             complement(5429..5626)
                     /locus_tag="OQP62_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2065 family protein"
                     /protein_id="HCS1721632.1"
                     /translation="MNSTIWLALALVLVLEGLGPMLYPGAWKKMVSALAQLPENVLRR
                     FGGGLVVAGVVVYYMLRKTIG"
     gene            complement(5705..6709)
                     /gene="hflC"
                     /locus_tag="OQP62_002083"
     CDS             complement(5705..6709)
                     /gene="hflC"
                     /locus_tag="OQP62_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HCS1721633.1"
                     /translation="MRKSVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDENK
                     PLVYAPGLHFKIPFIESVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSR
                     YYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSA
                     GTDDEVATPAADDAIAEAAERVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTE
                     VSEAIYNRMRAEREAVARRHRSQGQEEAEKLRAAADYEVTKTLAEAERQGRIMRGEGD
                     AEAAKLFADAFSQDPDFYAFIRSLRAYEKSFEGNQDVMVLSPDSDFFRYMKTPSSTTR
                     "
     gene            complement(6712..7971)
                     /gene="hflK"
                     /locus_tag="OQP62_002084"
     CDS             complement(6712..7971)
                     /gene="hflK"
                     /locus_tag="OQP62_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HCS1721634.1"
                     /translation="MAWNQPGNNGQDRDPWGSSKPGSNSGGNGNKGGRDQGPPDLDDI
                     FRKLSKKLGGFGGGKGTGSGGGSSSQGPRPQLGGRIVAIAAAAVVIIWAASGFYTIKE
                     AERGVVTRFGKFSHLVEPGLNWKPTFIDDVTPVNVEAVRELAASGVMLTSDENVVRVE
                     MNVQYRVTDPQKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQR
                     ELEETIKPYNMGITLLDVNFQAARPPEEMKAAFDDAIAARENEQQYIREAEAYTNEVQ
                     PRANGQAQRILEEARAYKTQTILEAQGEVARFAKILPEYKAAPQITRERLYIETMEKV
                     LSHTRKVLVNDKSGNLMVLPLDQMLKGGNAPAAKSDNSASNLLRLPPSTKSNASGASN
                     TSSSNQGDIMDQRRANAQRNDYQRQGE"
     gene            complement(8186..9466)
                     /gene="hflX"
                     /locus_tag="OQP62_002085"
     CDS             complement(8186..9466)
                     /gene="hflX"
                     /locus_tag="OQP62_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HCS1721635.1"
                     /translation="MFDRYDAGEQAVLVHIYFSQDKDMEDLQEFESLVSSAGVEAMQV
                     ITGSRKAPHPKYFVGEGKAVEIAEAVKATGAAVVLFDHALSPAQERNLERLCECRVID
                     RTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQL
                     ETDRRLLRNRIVQIQSRLEKVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNQIT
                     EARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPYDLVAAFKATLQETRQ
                     ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLMVMNKIDMLDDFEPRIDRDEE
                     NKPIRVWLSAQSGVGIPQLFQALTERLSGEVAQHTLRLLPQEGRLRSRFYQLQAIEKE
                     WMEEDGSVSLQVRMPIVDWRRLCKQEPALIEYVI"
     gene            complement(9538..9846)
                     /gene="hfq"
                     /locus_tag="OQP62_002086"
     CDS             complement(9538..9846)
                     /gene="hfq"
                     /locus_tag="OQP62_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HCS1721636.1"
                     /translation="MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGASNNYHHGSNAQGSTAQQDSEETE
                     "
     gene            complement(9929..10879)
                     /gene="miaA"
                     /locus_tag="OQP62_002087"
     CDS             complement(9929..10879)
                     /gene="miaA"
                     /locus_tag="OQP62_002087"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HCS1721637.1"
                     /translation="MNDVSKVSLPKAIFLMGPTASGKTALAIELRKVLPVELISVDSA
                     LIYRGMDIGTAKPNADELKAAPHRLLDIRDPSQAYSAADFRRDALAQMAEITAAGRIP
                     LLVGGTMLYFKALLEGLSPLPSADPEVRSRIEQQAAELGWEALHQQLQEIDPVAAARI
                     HPNDPQRLSRALEVFFISGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIELRF
                     HQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYIEGEISYDEMVYRGVCSTR
                     QLAKRQMTWLRGWEGVRWLDSENPDRARKEVLQVVGAIAD"
     gene            complement(10872..12728)
                     /gene="mutL"
                     /locus_tag="OQP62_002088"
     CDS             complement(10872..12728)
                     /gene="mutL"
                     /locus_tag="OQP62_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HCS1721638.1"
                     /translation="MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDI
                     DIERGGAKLIRIRDNGCGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASI
                     SSVSRLTLTSRTAEQAEAWQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKF
                     MRTEKTEFNHIDEIIRRIALARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGT
                     PFLEQALAIEWQHGDLTLRGWVADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQAC
                     EDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQT
                     ETTLPLEEIAPAPRHVPENRIAAGRNHFAVPAEPTAAREPATPRYSDGASGGNGGRQS
                     AGGWPHAQPGYQKQQGEVYRTLLQTPTTSPAPEPVAPALDGHSQSFGRVLTIVGGDCA
                     LLEHAGTIQLLSLPVAERWLRQAQLTPGQSPVCAQPLLIPLRLKVSADEKAALQKAQS
                     LLGELGIEFQSDAQHVTIRAVPLPLRQQNLQILIPELIGYLAQQTTFATVNIAQWIAR
                     NVQSEHPQWSMAQAISLLADVERLCPQLVKAPPGGLLQPVDLHSAMNALKHE"
     gene            complement(12738..14057)
                     /gene="amiB"
                     /locus_tag="OQP62_002089"
     CDS             complement(12738..14057)
                     /gene="amiB"
                     /locus_tag="OQP62_002089"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiB"
                     /protein_id="HCS1721639.1"
                     /translation="MIYRIKNAVIAALILLCAQAGAASLSDIQVSNGEQQARITLSFI
                     GEPEYAYSQDGKRTVALDIRQTGVIQGLPLQFSGNNLVKTIRAGTPKDAQSLRLLVDL
                     TENGKTEAVKRQNGGNYTVIFTINADVPPPPPPVVAKRVESAPRPTEPARNPFKSSDD
                     RLTGVTSSNTVTRPAARASAGAGDKVVIAIDAGHGGQDPGAIGPGGTREKNVTIAIAR
                     KLRTLLNNDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSIHADAAPNRDATGAS
                     VWVLSNRRANSEMANWLEQHEKQSELLGGAGDVLTNSQSDPYLSQAVLDLQFGHSQRV
                     GYDVATNVLSQLDGVGSLHKRRPEHASLGVLRSPDIPSILVETGFISNHGEERLLASD
                     RYQQQIADAIYRGLRKYFAAHPIQSAPQGSPGQTASTNQPGAITAAN"
     gene            complement(14074..14535)
                     /gene="tsaE"
                     /locus_tag="OQP62_002090"
     CDS             complement(14074..14535)
                     /gene="tsaE"
                     /locus_tag="OQP62_002090"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HCS1721640.1"
                     /translation="MMNRVIPLPDEQATLDLGQRVANACDGATVIYLYGDLGAGKTTF
                     SRGFLQALGHNGNVKSPTYTLVEPYALDNMMVYHFDLYRLADPEELEFMGIRDYFAND
                     AICLVEWPQQGKGVLPDPDVEIHIDYQAQGREARVSAVSSSGHSLLARLAD"
     gene            complement(14507..16054)
                     /gene="nnr"
                     /locus_tag="OQP62_002091"
     CDS             complement(14507..16054)
                     /gene="nnr"
                     /locus_tag="OQP62_002091"
                     /EC_number="4.2.1.136"
                     /EC_number="5.1.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HCS1721641.1"
                     /translation="MMDHNMKKNPVSIPHSIWPADDIKRLERDAADAFGLTLYELMLR
                     AGDAAFRVARDSYPDARHWLVLCGHGNNGGDGYVVARLAQAAGISVTLLAQESDKPLP
                     EEAAQARDAWLNAGGIIHAADIIWPEATDLIIDALLGTGIAQEPRDPVAGLIEQANAH
                     PAPVVAVDIPSGLLAQTGTTPGAVISAAHTVTFIALKPGLLTGKARDVTGILHYDALG
                     LEGWLASQTPPLRRFDATQLGQWLTPRRPTSYKGDHGRLAIIGGDQGTAGAIRMAGEA
                     ALRTGAGLVRVLTRGENIASLLTARPELMVHELTPQSLEESLTWADVVVIGPGLGQQE
                     WGKKALQKVENVRKPMLWDADALNLLAINPDKRHNRVITPHPGEAARLLGCSVAEIES
                     DRLLSAQRLVKRYGGVVVLKGAGTIIAAEHHPLAIIDAGNAGMASGGMGDVLSGIIGA
                     LLGQKFTPYDAACVGCVAHGAAADLLAARYGARGMLATDLFTTLRRIVNPDVIDVNHD
                     ESSNSAT"
     gene            16053..17192
                     /gene="queG"
                     /locus_tag="OQP62_002092"
     CDS             16053..17192
                     /gene="queG"
                     /locus_tag="OQP62_002092"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HCS1721642.1"
                     /translation="MSKPLDLNQLAQNIKQWGLELGFQQVGITDTDLRASEPALQAWL
                     DKQYHGEMAWMARHGMMRARPHELLPGTLRVISVRMNYLPANAAFASTLKDPTLGYVS
                     RYALGRDYHKLLRSRLKKLGEQIQQYCGSLNFRPFVDSAPILERPLAEKAGLGWTGKH
                     SLILNREAGSFFFLGELLIDLPLPVDQPVEEGCGKCVACMTICPTGAIVEPYTVDARR
                     CISYLTIELEGAIPEAFRPLIGNRIYGCDDCQLICPWNRYSQLTDEADFSPRKALHNP
                     DLLELFSWSEAQFLKVTEGSAIRRIGHLRWLRNVAVALGNAPWSNAVITALESRKGEH
                     PLLDENIEWAIAQQIEKRNACIIEVQLPKKQRLVRVIEKGLVRDA"
BASE COUNT         3803 a         5087 c         4387 g         4045 t
ORIGIN      
        1 ggttttgctt tttatattac cagccaaaga taaaaaaaaa ccatccgatt atggatggtt
       61 ttttcttaaa aaatactatt agcgtcaggt acgctggcga acggcttcaa acagacaaat
      121 cccggtcgcc acagagacat tcagcgatga cacgctaccg gccataggaa tgctgatcag
      181 ctcatcgcag tgctcacggg tcagacgacg cataccttca ccttctgcgc ccatgaccag
      241 cgccatgcgg ccaggcattt tgctctgata cagcgtatgg tcagcctcgc ccgccgttcc
      301 gacaatccag atattctctt cctgcaacat gcgcatcgtg cgcgccaggt tggtgacgcg
      361 gatcaacggc acgctttccg ctgcgccgca ggcgactttc ttcgccgtcg cgttaagttg
      421 cgcggagcgg tctttcggca cgattaccgc atgtacgcct gcagcatcgg cgctgcgcag
      481 acaggcgcca agattatgcg gatcggtgac gccatcgagg atcaacaaaa aggggcgatc
      541 gtgtaatgcg atcagatccg gtagatcgtt ttcctgatac tgccggcctg gtttcacacg
      601 agcgataatg ccctgatgca cggcaccgtc gcttttctcg tcgagatatt ggcggtttgc
      661 cagctggata accacgccct gggactcaag ggcgtgaatc agcggcaaca gacgtttatc
      721 ttcacggcct tttaaaataa aggcttcctg aaaacgttca ggggcgcgct ccagcagggc
      781 ctgcactgcg tggatgccgt aaatcatttc gctcattaat gtactcgttg tttacgtttt
      841 gccgggggcg ctacgcttgc ccggcctaca gataattgac cctcttctgt ttgaagaggg
      901 tattgctcac tctgccgctt ttttcttcgc cgcacgcttc gctttggtcg ctgcggctat
      961 tttctgcgtt ttagccgatg gcttttttgc ttttctcgcg tctttcttcg ctgctttcgg
     1021 cttcgctttt ttctcgccgc ggaaggcgct atcaggctcg aagttaacct ttttacctac
     1081 ctgacgacgt ttaccggcgt ttttactttc accttttttc gctttttcac gcgccgtttt
     1141 gccgacgtta cgcggtgcgc gctcgctgga aatcaagcta aagtcaattt tccgttcgtc
     1201 catattcacc gcttcgacgc gtacctcgac ccggtcgccc aggcgatatg tctgcccgcc
     1261 ggattcgcca atcagacgtt gccctacctg atcgaagcga tagtaatcgt tatccagtga
     1321 ggaaacgtgt accagcccat cgataaacag ttcatcaaga cggacaaaga agccgaaacc
     1381 ggtgacgctg gcaatcacgc ccttaaagac gttgcctacc tgatccagca taaagtcaca
     1441 tttcagccag tcggagacat cacgcgtcgc ttcatcagcg cggcgttccg ccatcgaaca
     1501 gtgctggccg agctgcaaca tctcttccat cgagtagtga taaccgcccg tttctgtggt
     1561 gttgcccttg ttcccttgct ctttagccag caggtactta atggcgcggt gcaaagaaag
     1621 atccggatag cggcgaatcg gcgaggtaaa gtgcgcataa gactgcaacg ccaggccaaa
     1681 gtgcccgcgg ttttccggat cgtaaatcgc ctgcttcatt gaacgcagca gcatagtttg
     1741 cagcatttcg gcgtccggcc tgtcggcaat cgattcaagc agttcggcat aatcgcgcgg
     1801 ttccggttta tttccgcccg gcagctccaa ccccagctcc gccagtacgg agcggaatga
     1861 ggtgatcgct tcggtggtgg gcttatcatg aatacggaat aacgccggct ctttagcttt
     1921 ttcgacaaag cgcgccgccg agatattcgc catgatcatg cactcttcga taagcttatg
     1981 cgcgtcatta cgctgggtct gttcgatacg ctcaatgcga cgctcggcgt taaagataaa
     2041 cttcgcctct tcgctctcaa acgagatccc cccgcgttct tcacgcgctt tatccagcac
     2101 tttgtagagg ttgtgcagct cttcaatatg cttcaccagc ggcgcatatt gttcacgcag
     2161 atcctgatcg ccctgcagca tatgccagac tttggtatag gtcagacgcg catgggagct
     2221 catcaccgct tcatagaatt tgtagccggt cagccgacct ttcgccgaga tggtcatttc
     2281 acagaccata cacagcctgt caacctgcgg gtttagcgaa cacaggccgt tggagagcac
     2341 ctccggcaac attgggacaa cctgtgacgg gaagtaaacc gacgtgccgc gattgcgcgc
     2401 ctcgcgatcc aacggcgttg gcggccgtac ataatagctc acgtcagcaa tagcgaccca
     2461 caaacgccag ccgccgccgc gttttttctc acagtaaacc gcgtcgtcaa agtcacgggc
     2521 atcttcgcca tcaatcgtga ccagcggcaa atcgcgcaga tcgacacgac cgactttcgc
     2581 ctcttccggc acctcttctt tcagcccggc gacctgctgc tctaccgcct gcggccagat
     2641 gtagggtatt tcatgggtac gcagcgccat atcaaccgcc ataccggtac ccatattgtc
     2701 gcccagcact tcgacgattt tccctaccgc tttagtacgg cgagttggac gttgggtcag
     2761 ttcaaccacg accacgaacc ccatccgcgc gcccatgacg tcttctggcg ggataagaat
     2821 gtcgaagctg agacggctgt cgtccggcac cacaaagccg acgcccgcat cggtgaaata
     2881 acgcccgact atctgactgg ttttcggtac cagtacacgg acgatacgcg cttcgcggcg
     2941 acctttacga tcggcgccca gcggctgcgc cagcacctga tcgccatgaa tacaggtttt
     3001 catctgctcg ctggaaagat acagatcgtc tttgcggcct tcgacacgta agaaaccgta
     3061 accatcacga tgaccgatca cggtgccttt cagcaggtcg aggcgttccg gcagcgcata
     3121 gcactggcgg cgggtaaaga ccagttgtcc atcgcgctcc atcgcgcgca ggcggcgacg
     3181 caaggcttca agctgctctt cgccttcaat attcagttct acggccagtt cttcgcgact
     3241 ggccggtttt tcacgtttcg ttaaatgttc gaggataaat tcccggctcg ggataggatt
     3301 cgcgtatttt tctgcttcgc gttcctggaa aggatcttgt gacattgagg ttcctccatt
     3361 gtcatctcta atgaagttta cttcactcca ccagtaataa tttataaagc ggttgattct
     3421 cttcaaccaa atcggcaagc gtgtagttat ccagctcctt gagaaaactc tgcacggcct
     3481 tagaaagcgc ctgtttcaga cgacaggcag gggtgatgtg gcaaaattcg ctgctacagt
     3541 tgaccagtga taagggttcc agctcacgca ccacatcgcc aatacaaata gtattagccg
     3601 gtttacccag gcggataccg ccattttttc cccgaacggc ggtgacaaag cccgcccggc
     3661 taagctgatt gataattttg accatatgat tacgggacac gtcgtagact tctgtcacct
     3721 cagaaatgct ggtcattcgt ccatctggta acgacgccat atagattagc gcacgtaagc
     3781 cgtaatcggt gaaactcgtt aactgcacat caacctcagg aaaagggaaa acgggatata
     3841 acttatctgt attgatgata aaccagccac ctgtcaggct gctaatttat ttcggttcag
     3901 gaaggaaaaa agcggggaac aatgacgcat ttgagccgaa ggatgatgca aagcatctta
     3961 tccggccaac aaatgcgtac tcatcataga cccggtaagc gtagcgttac cgggcatcat
     4021 ccatcaatta cgcgtcgaac ggatcgcgca gaatcatcgt ctcagtacga tcggggccgg
     4081 tagaaataat atcaatcggc acgccggtca gttcttcgat acgtttgatg tagttcagcg
     4141 ccgcctgcgg caggccgcta cgatctttca cgccgaaggt ggattcagac cagcccggca
     4201 tggtttcgta aatcggctct acacctttcc agtcgtcagc tgccagcgga gtggtagtca
     4261 cttcgcgacc atccggcata cggtaagcca cgcagagttt cacctctttc aggccatcca
     4321 gcacgtccag tttggtcagg cagaagccag acagggagtt cagctgtacc gcacgacgaa
     4381 cggcaacggt gtccagccag ccggtacgac gacgacggcc ggtagtggcg ccgtattcgt
     4441 taccctgctt gcagaggaac tcgccggttt catcaaacag ttcggtcggg aacggacctg
     4501 cacctacacg agtggagtaa gctttgagga tacccagaac gtaatcaaca taacgcgggc
     4561 ccaggccgga accggtcgcc acgccacccg cagtggtgtt agaagaagtt acgtacggat
     4621 aagtaccgtg gtcgatatcc agcagggtac cctgcgcacc ttcaaacatg acgaaatcgc
     4681 cacgctgacg cgcctggtcg agcaggtctg aaacgtcaac aaccatagaa gtcaggatgt
     4741 cggcaacagc catcgtatca tccagaactt tctggtaatc aaccgcttca gctttgtagt
     4801 agttaaccaa ctggaagttg tgatattcca tcacttcttt cagtttttca gcaaaggttt
     4861 ctttgtcgaa aaggtcacca acacgcagac cgcgacgtgc cactttatct tcataagcag
     4921 gcccgattcc acgaccggtg gtgccgatcg ctttcgcgcc acgcgctttc tcacgcgcgt
     4981 tatccagcgc aacgtgataa tcaaggatca gcggacaggc ttcagacagc agcagacgct
     5041 cacgaacggg gatgccacgg tcttccagtt ctttcatctc tttcatcagc gcgctcggag
     5101 acagcacaac accgttaccg atgatgctgg ttacattctc gcgaagaata cctgatggaa
     5161 taagatggag aacggttttt tcaccgttga ttacgagagt atggcctgcg ttgtgaccgc
     5221 cctggtagcg tacaacatat ttagcccgtt cagtcagaag atcgacgatc tttcctttac
     5281 cttcgtcacc ccattgggtg cccagtacga cgacgttgtt acccattttt caaaatcacc
     5341 gtttgcttaa aaatggattc taccatcgct ttttcagata tacagcactt tttgcactca
     5401 atctgcggca aatccgacca ctttttgctc agccaatcgt tttcctcaac atgtagtaga
     5461 ccacaactcc cgcgaccaca agtccgccgc caaaacgacg taaaacattt tccggcagtt
     5521 gcgccagtgc cgaaaccatt tttttccatg cgccgggata cagcatcggt cccagccctt
     5581 cgaggactaa taccagagca agcgccaacc agattgttga attcatttat cgcccttata
     5641 aaagaaaacc accggcatcc tttggatgcg gtggttttgc tggtctaaaa ccgctgacgc
     5701 tattttagcg tgtcgtcgaa ctcggtgtct tcatgtagcg gaagaaatcg ctgtccgggc
     5761 tcagtaccat cacgtcctga ttaccttcga agctcttctc gtaagcgcgc agactacgaa
     5821 tgaacgcgta gaaatcaggg tcctggctga acgcgtcggc aaacagcttc gcggcttcag
     5881 catcaccttc accacgcatg atacgcccct gacgctcggc ttccgccaga gttttcgtca
     5941 cctcatagtc agcagccgca cgcagttttt ccgcttcttc ctgaccttgt gagcgatgac
     6001 gacgcgcgac cgcttcacgc tcggcgcgca tacggttgta aatcgcctca gaaacctcgg
     6061 tcggcaggtt gatctgctta atacgcacat cgaccacttc gatacccaac gccgccatac
     6121 tgttcgggtt gatgaccggt actttacctt tggtttccgc cgtgacgcgt tccgccgctt
     6181 cggcaatcgc gtcatccgcc gccggggtcg ccacttcatc atcagtgccg gctgaaccgg
     6241 agttcagcgc gtcgcgcact tccagagtca gacgaccacg agaatcggtc acgatgtctt
     6301 ttacgtccag gcgaccaatc tcagaacgca aacggtccga gaacttacgt tttaacagca
     6361 cttcggcttg cgaaatatcg ccgccgccgg tcgccagata gtaacggcta aagtcgctga
     6421 tacgccattt gatgtaggag tcgacaatca ggtctttctt ctctttagtc acaaagcgat
     6481 cggcctggtt atccatcgtc tggatacgcg catcaagcat tttcactgat tcaataaacg
     6541 ggatcttaaa gtgcagaccc ggcgcgtaaa ccagcggttt gttctcatcg tcacgcagaa
     6601 ctttaccaaa acgcagcgta atgccgcgct cgccctcttt gaccacaaag acggacatgt
     6661 agagcactac cagcacgatg atgataatcg caataactga cttacgcatc gttattcccc
     6721 ctgacgctgg tagtcgttac gctgcgcatt cgcgcggcgt tggtccataa tatcgccctg
     6781 atttgaggac gacgtgttgc ttgctccgct ggcgttagac tttgtggacg gcggcaggcg
     6841 cagcaggttg ctggcgctat tgtcgctctt tgccgccggc gcattcccgc ctttcagcat
     6901 ctgatctaac ggcagcacca ttaaattacc gctcttgtcg ttaaccagta ctttacgggt
     6961 atggctcagc actttttcca tcgtttcaat atacagacgc tcgcgcgtaa tctgcggcgc
     7021 ggctttatat tctggcaaaa tcttcgcaaa ccgggcgact tcaccctgcg cttccaggat
     7081 agtctgggtt ttataggcac gtgcctcttc cagaatacgc tgcgcctgac cgttggcgcg
     7141 cggctgaact tcgttggtat acgcttccgc ttcacgaatg tactgctgct cgttttcacg
     7201 tgcggcaatc gcgtcgtcaa aggcggcttt catctcttcc ggcggacgcg cagcctggaa
     7261 gttcacgtcc agcagggtaa tccccatgtt gtacggtttg atagtctctt ccagctcgcg
     7321 ttgggtatcg ctacgaataa cggtacgacc ttcggtcaga atgcgatcca tcgtgtattt
     7381 accaatgacg ccacgcaacg cgctgtcggt ggcctgacgc aggctatcgt ccgggctggt
     7441 cacgctaaac agatatttct gcggatcggt gacgcggtat tgcacgttca tttcaacgcg
     7501 cacgacgttt tcatcagacg tcagcatcac gcctgacgcc gccagttcgc gcaccgcttc
     7561 gacgttcacc ggcgtgacgt cgtcaataaa tgtcggcttc cagttcagac ctggctctac
     7621 cagatggctg aatttaccaa aacgcgtcac aacgccgcgc tcggcttctt taatggtata
     7681 aaaaccgctg gccgcccaga taatgactac tgccgccgcg gcgatggcga caatacggcc
     7741 tcccagttgc ggacgcgggc cttgcgatga gctaccgccg ccggaaccgg tgcctttacc
     7801 gcccccaaaa ccaccgagtt ttttactcag cttacggaag atatcatcca gatcgggagg
     7861 tccctgatcg cggccacctt tgtttccatt tcccccagag ttgctgccag gtttgctgct
     7921 tccccacggg tcgcggtcct gtccgttatt accgggctga ttccacgcca tgtttgtgct
     7981 ccatatttgt tatgcggtga tccccgttgt ctttcgacct cagaggataa ggcgaaatta
     8041 ctccatgctt cagacgaacc gccgttacag acatcatctt tcaggctacg ccttgagtgg
     8101 cggctttttt accccaggtc acttcgttgt gagctcctga aattctctca gctaccgctt
     8161 caatacgacc tgaatgactt cgcgtctaga tcacgtattc gatcaacgct ggttcttgtt
     8221 tacagaggcg acgccagtcg acaatcggca ttcgtacctg cagactgacg ctaccgtctt
     8281 cctccatcca ctctttttct attgcctgaa gctgataaaa ccggcttctc agacgccctt
     8341 cctgcggcag caaacgcagc gtatgctgcg ccacctcgcc ggaaagacgc tccgtcaaag
     8401 cctgaaaaag ctgtggtatt cccacgccgc tttgcgctga aagccaaacg cggatgggtt
     8461 tattctcttc atctctgtcg atacgcggtt caaagtcgtc cagcatatcg attttgttca
     8521 tcaccattaa ggtggggatt tcgtgagcgt caatctcttc aagaacggtg tttaccgcct
     8581 cgatgttttc ctgcacacga acatccgccg catcgaccac atgcagcagc agcgtcgcct
     8641 gacgcgtctc ctgcagggta gctttaaagg cagccaccag atcgtacggt aaatggcgga
     8701 taaagcctac cgtatccgcc agaacggttt caccgacatc cgctacatca atacgacgta
     8761 acgtggggtc cagcgtcgca aatagctgat ctgccgcata gacccgcgct tcagtgatct
     8821 gattaaaaag ggtggatttt ccggcgttgg tatagcccac cagcgatacc gtcggaacgt
     8881 cggccttgat gcgcgactgc cgcccctgct cacgttgctt ctcaactttc tccaggcgcg
     8941 actgaatctg cacaatgcga ttacgcagta aacgacggtc ggtttcgagc tgggtttcac
     9001 ccggaccgcg caaaccaatc ccgcctttct gacgttcaag gtgggtccag ccacgcacca
     9061 gacgcgtagc cagatggcgt agctgcgcca gctcaacctg caacttacct tcatgggtac
     9121 gcgcacgttg ggcaaaaata tctaagataa gaccggtgcg atcgataacc cggcactcgc
     9181 acaaacgctc caggtttcgc tcctgggctg gactcaatgc atgatcaaac aatacgaccg
     9241 ctgcgccagt cgctttcacg gcttccgcaa tttcaactgc cttaccttca cctacaaagt
     9301 acttcgggtg cggtgcttta cggctaccgg taatcacctg cattgcttcg acaccggcgg
     9361 aagagaccag agattcaaac tcctggaggt cttccatatc tttgtcttgc gaaaaataga
     9421 tgtgtaccag taccgcctgc tcaccggcat cataacggtc aaacaagcgt aaaccctctt
     9481 aataaccagc gggggcgatt atccgacgcc cccgacatgg ataaacagcg cgtgaactta
     9541 ttcagtctct tcgctgtcct gttgcgcagt agaaccctgc gcgttgctac cgtgatggta
     9601 gttattgctg gcgccgccac cggcattgtt gctgtgatgg gaaaccgggc gagacgggac
     9661 aacagtagaa atcgcgtgct tataaaccat ctggctgacc gtgtttttca acaggatcac
     9721 gaactgatca aaggactcga tttgaccttg cagcttaata ccattcacca aataaataga
     9781 aactggaaca cgttcccgac gcaatgcgtt caggaacgga tcttgtaaag attgcccctt
     9841 agccattctc ttttccttat atgcttattt gtactttgaa cctttcgatt ctgaaaaatt
     9901 gcgcacgata cgtctcaatt gtacacattc agtctgcgat agcaccaaca acctgtaata
     9961 cttcttttcg cgcccgatcg ggattctcac tgtcaagcca gcgcacccct tcccaaccgc
    10021 gcaaccaggt catctggcgc ttcgccaact gtctcgtgga gcaaacacct ctataaacca
    10081 tttcatcata tgagatttcg ccctcaatgt atgaccacat ctggcggtat cccacacaac
    10141 ggatggaagg caagtccgta tgcaaatctc ctcgggcaaa aagcgcccgg acttctgctt
    10201 caaaacctga agccaacatc tgatgaaaac gcagttcaat gcgctgatgg agcagttcac
    10261 ggctcgctgg ggcgatagcg aactgatgca cctggtacgg tagcgcgtct cctgacgttt
    10321 gcgttagctc cgttaaagtt ttacccgaaa tgaaaaaaac ttccagtgcc cgggaaagtc
    10381 tttgcggatc atttggatga attcgcgcgg cggcaaccgg atctatctcc tgaagttgct
    10441 gatgcaacgc ctcccatcca agctccgctg cttgctgctc tatccgggat ctgacttccg
    10501 gatctgctga aggcagcggc gataaccctt ccagcaatgc cttaaaatac agcatggtac
    10561 cgcccactaa cagcgggata cgccccgcag cggtgatctc cgccatttgc gctaacgcgt
    10621 cgcggcgaaa atccgccgcc gaatacgcct gcgacgggtc gcgtatatcc agcagtcgat
    10681 gcggcgccgc tttcagctca tcggcattcg gcttagccgt gccaatatcc attccccgat
    10741 aaatgagggc ggaatcaacg cttatcaact ctactggcaa aactttacgc agttctatcg
    10801 ccagcgccgt tttgccggag gccgtcggcc ccatcaaaaa tatcgcctta ggcaggctca
    10861 ccttgcttac atcattcatg cttcagggcg ttcatcgccg aatgtaaatc aacaggttgt
    10921 aacaggccac ccggcggcgc ttttaccagc tgcggacata gccgctcaac atccgccagc
    10981 agcgatatgg cctgcgccat cgaccactgc ggatgttcgc tctgcacatt acgcgctatc
    11041 cattgtgcaa tattgaccgt tgcaaatgtg gtctgttgcg ccaggtagcc tatcagttca
    11101 ggaatcaaga tttgtaaatt ttgttgtcgt aagggtaaag gcaccgcccg aatggtcaca
    11161 tgctgcgcat ctgactgaaa ttcaataccc aattctccca acaaagattg ggctttttgc
    11221 agcgcggctt tttcatcggc gctcactttt aaacgcagcg gaatcagcaa cggctgcgcg
    11281 caaaccggac tttgacccgg tgtaagctgc gcctgacgca gccaacgctc cgcaaccggc
    11341 agcgacaaga gctggatagt ccccgcgtgt tccagcaacg cgcagtcacc gccgactatc
    11401 gtcagtacgc gaccaaaact ctggctatgt ccgtcaagcg caggcgcaac cggctccggc
    11461 gcggggctcg tcgtcggcgt ctgtaaaagc gtgcgataaa cctcgccctg ctgcttctga
    11521 tagcctggct gcgcgtgcgg ccaaccacct gcggactgac gcccgccgtt accgcccgat
    11581 gcgccgtcgg aataacgcgg tgtcgcgggc tcgcgcgccg cagttggctc ggcgggtaca
    11641 gcaaaatggt tgcgcccggc ggcgatacgg ttttccggga catgccgcgg cgctggcgca
    11701 atctcctcca gcggcagcgt cgtttccgtc tgctgttgta gaacgctcag caccccttga
    11761 tagatgaagt cgtgcaccag ccgcgattga tgaaaacgca cttcgtgctt ggcgggatga
    11821 acattgacat ccacctgatg cgggtcaatc tccagataca acacaaacgc aggctgttgg
    11881 tccgcgccca gtttatcttc acaggcctgg cgaatggcat ggttgatcaa gcggtcgcgc
    11941 atcatgcggc cattcacata gcagtactgg atctccgtta acgccgtggt ggtgtgattc
    12001 ggatcggcga cccagccgcg cagggtcaga tcgccatgct gccactcgat cgccagtgcc
    12061 tgttcgagaa acggcgtgcc gcagatggcg cctaaccggc gctctttttg cccgtccttt
    12121 gcgacagcgc gatactgccg taccaatttg ccgttgtgcg acaggttaag cgtgacgtca
    12181 aaacgggcca atgcaatacg acggatgatc tcatcgatgt gattaaattc cgttttttcg
    12241 gtacgcatga atttgcgccg ggcgggcgta ttataaaaga gatccagaac ttccagggtg
    12301 gtgccgaccg ggtgcgcggc gggttttacc gtcacgtcca tgtcgcgccc ttccgcatac
    12361 gcctgccagg cttccgcctg ctccgccgtg cgcgacgtta gcgtcaaacg cgagaccgaa
    12421 ctgatactcg ccagcgcttc gccgcgaaat cccagactga taatcgcttc cagatcgtca
    12481 agcgaggcga ttttactggt ggcatgacgg gccagcgcca gcgccagctc ctctttttta
    12541 atgccgcagc cattgtcgcg aatacgaata agcttcgcgc cgccacgctc gatgtcgata
    12601 tcaacgcggg tggcgcctgc atccagacta ttctctacca gctctttaac aaccgacgca
    12661 gggcgttcca ccacttcgcc agcggcgatt tggttcgcaa gctgcggcgg cagaacctga
    12721 atcggcatga aatctcctta attcgcggcg gttatagcgc caggctggtt ggtactggcc
    12781 gtctggcctg ggctgccctg cggcgcagac tggatcggat gcgctgcaaa gtacttacgc
    12841 aacccccggt atatagcgtc agcaatctgc tgctgatagc ggtcgctcgc cagcaatcgt
    12901 tcttcgccgt gattactgat aaaacccgtc tccaccaaaa tggacgggat atccggcgaa
    12961 cgcagcacgc ccaggctcgc gtgttccggg cgacgtttat gcagcgaccc cacgccgtcg
    13021 agttggctta gtacgttcgt cgccacatca taccctaccc gctgcgaatg accgaattgc
    13081 aaatccagta ccgcctggct caggtaaggg tctgactgac tgttcgtcag cacatcgcca
    13141 gcgccgccta acagttcgga ttgcttctca tgctgctcaa gccagtttgc catttcgcta
    13201 ttcgcgcgac gattggacaa tacccagacg gaggcgccgg tggcgtcgcg atttggcgcg
    13261 gcatccgcat gaatagagac aaggaagttg gcgttttgct tacgcgccac atcagaccgc
    13321 cccatcaccg aaataaaata gtcgccgtca cgcgtcagca cgcctttaaa catcggatcg
    13381 ttattcagca atgtgcgtaa cttacgcgcg atggcgatgg tgacattttt ctcgcgcgta
    13441 ccgcccgggc ctatcgcacc ggggtcctgg cctccatgtc cggcatcaat agcaatcacc
    13501 actttatcgc cagcgcctgc cgacgcgcgc gccgcaggcc gcgtaacggt gttgctgctg
    13561 gttacgccgg tcaggcgatc atcagaagat ttaaacggat tacgggcagg ctccgtcggg
    13621 cggggcgcgc tttcaacccg tttcgcgacg acaggcggtg gcggcggcgg aacatcggca
    13681 ttaatggtga aaatgaccgt atagttgccg ccgttttgcc gcttcaccgc ctcggtttta
    13741 ccattttccg tcagatcgac aagcagccgt aaagattgcg catctttcgg cgttccggca
    13801 cggatcgttt ttaccagatt gttaccgcta aactgaagcg gcagcccctg aatcacgccg
    13861 gtctgcctga tatccagcgc cacggtccgt ttaccgtcct gtgagtaagc atattccggc
    13921 tcgccgataa aactcagcgt aatgcgcgcc tgctgctcgc cgttggacac ctgaatatca
    13981 gagagactgg cggcgcccgc ctgcgcgcac agcaggatta aggctgctat tacggcattt
    14041 ttgatgcgat aaatcatccc gccaccttta tagctaatcg gctaaacgcg ccagtaacga
    14101 atgacccgat gaggataccg cgcttacgcg agcctcacgc ccctgcgcct ggtaatcaat
    14161 atggatttcg acgtccgggt cggggagaac gcctttacct tgttgcggcc actccaccag
    14221 acaaatggcg tcgttggcga aataatcgcg aatgcccata aactccagct cctccgggtc
    14281 cgcaagacgg tataagtcga agtgatatac catcatgtta tcaagcgcat aaggctctac
    14341 cagcgtatag gtggggcttt ttacattacc gttatggcct aacgcctgta aaaatccccg
    14401 gctaaacgtc gttttaccgg cacctaaatc gccatacaga taaataacgg tcgcgccatc
    14461 acaggcgttg gctacccgtt gccccaggtc tagcgtcgcc tgttcgtcag gtagcggaat
    14521 tactcgattc atcatggttt acgtcaatca catcagggtt aacaatacgc cgcagcgtag
    14581 taaaaagatc ggtcgccaac atgccgcgag cgccataacg cgctgccagt aagtccgccg
    14641 ccgcgccgtg agccacacat cccacacatg ccgcatcata cggggtaaac ttctgtccga
    14701 gcaatgcgcc gatgatgccg gacaggacat cgcccatccc gccgctcgcc atccccgcat
    14761 taccagcgtc aatgatagcc agagggtggt gttcagcggc aataatcgtt cctgcgcctt
    14821 ttaacacgac cacgcctcca taccgtttta ccagacgctg tgctgaaagt aagcgatcac
    14881 tttcaatttc tgccacagaa catcctaaca ggcgggccgc ctctcccgga tgcggcgtaa
    14941 tcacgcgatt gtgacgttta tcaggattga ttgccagtag gttcaacgca tccgcatccc
    15001 acagcatagg tttacggacg ttttctactt tctgtaaggc ttttttgccc cattcctgct
    15061 gtccaagccc cgggccgatc accacaacgt cagcccaggt caggctctct tccagcgact
    15121 gaggcgtgag ttcatgtacc atcagttccg ggcgggccgt cagcaacgac gcgatgtttt
    15181 caccgcgagt cagtactctg accaacccag cccccgtacg cagcgccgcc tcgccagcca
    15241 tccgaattgc acccgctgtt ccctgatcgc cgccgataat cgccagacga ccatgatcgc
    15301 ccttatacga ggtcggtcga cgcggcgtta accattgccc caactgcgtc gcgtcaaaac
    15361 gccggagcgg cggcgtctgg ctcgccagcc agccttccag ccccaacgcg tcataatgca
    15421 atatgccggt aacgtcacgc gctttgccgg tcagcaggcc tggtttcagg gcgataaacg
    15481 tgaccgtatg cgcggcgctt atcaccgcgc caggcgtggt gcccgtttgc gccagcaggc
    15541 ctgacgggat atcgacggcg acaaccggcg caggatgggc gttcgcctgt tcaatcagac
    15601 cggctaccgg atcgcgcggc tcctgggcta tgccggtgcc aagcagcgcg tcgataatca
    15661 gatccgtcgc ttccggccag ataatatcgg cagcatggat aatgccgccg gcattcagcc
    15721 aggcatcgcg cgcctgcgcc gcttcttcag gtaacggttt gtcgctctcc tgcgccagca
    15781 acgttacgct aatgcccgcc gcttgcgcta gtcgcgccac gacgtaacca tcgccgccgt
    15841 tgttgccatg accacacaac accagccagt gtcgggcgtc agggtaactg tcacgggcta
    15901 cccgaaatgc cgcgtcgcca gcgcgcagca tcaattcata gagtgtgagt ccgaaggcat
    15961 ccgccgcatc gcgttccagc cgtttgatgt catcggcggg ccaaatggag tgtggtatac
    16021 ttacagggtt tttcttcatg ttatggtcca tcatgtcaaa gcccctcgat ctcaatcagt
    16081 tagcgcaaaa tattaagcag tgggggctgg agctgggctt tcagcaggtc ggtattactg
    16141 ataccgatct gcgcgcatcc gaacctgcgc tgcaggcgtg gctggacaaa caataccacg
    16201 gcgagatggc atggatggcg cgccacggta tgatgcgcgc ccggcctcat gaactcttac
    16261 ccggtacgct acgtgtcatc agcgtgcgca tgaactatct gcccgccaac gccgcgtttg
    16321 ccagtacgtt gaaggatccc acgctgggct acgttagccg atatgcgctg gggcgtgatt
    16381 atcacaagct gttacgcagc cgtcttaaaa aactgggcga gcagatccag cagtactgcg
    16441 gttcgctgaa ttttagaccg tttgtcgact ctgcgcctat tcttgaacgc ccattagcgg
    16501 aaaaagccgg acttggctgg acgggtaagc actcacttat ccttaatcgg gaggcgggct
    16561 cattcttttt cctgggggaa ttgctgattg atttaccgct gccggtcgac cagccggtcg
    16621 aggaaggttg cggcaaatgc gtcgcctgta tgaccatttg cccgaccggg gcgattgtcg
    16681 aaccgtatac ggtggacgcg cggcgctgta tttcttatct caccattgag ctggaaggcg
    16741 ctattccgga agcatttcgc ccactgatag gtaaccgtat ttacggctgc gatgactgcc
    16801 agcttatctg tccgtggaat cgttactctc agttgaccga cgaagcagat tttagcccac
    16861 gcaaggcgct gcataaccca gatttgcttg agttgtttag ctggagcgaa gcgcagtttc
    16921 tgaaagtcac tgaaggttct gcgattcggc gcattggcca tttacgctgg ctgcgcaatg
    16981 ttgccgttgc gctggggaat gcgccgtgga gtaatgccgt cattacggcg ttggaaagcc
    17041 gcaagggtga gcatccactt cttgatgaga atatcgaatg ggcgattgcg caacaaattg
    17101 aaaagcggaa cgcctgcatc attgaagtgc agctaccgaa aaaacagcgt ctggtcaggg
    17161 tgattgaaaa agggctggtg cgcgatgcct gaattattca caggctgtgt ataaaaataa
    17221 aaacacattg cgattcaaga gggaaaaaag gaacagacaa taacgctaac gttttgaaat
    17281 cttatttttt ctatattttt cagtaaatta tagaaattct ac
//
LOCUS       DAJVSD010000078        17185 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.078, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000078 DAJVSD010000000
VERSION     DAJVSD010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 17185)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17185)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17185
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.078"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..292
                     /locus_tag="OQP62_002093"
     CDS             <1..292
                     /locus_tag="OQP62_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4751 family protein"
                     /protein_id="HCS1721643.1"
                     /translation="WRTEIIENGNAFFHWQGHDRKDGHRDTIINYLLNGQRWQSTIED
                     YIFFHALEGKAWQGHYDNIIEYVSSDHYVYQSAFAEYITDQIHQRAPHGTRF"
     gene            complement(298..993)
                     /gene="araD"
                     /locus_tag="OQP62_002094"
     CDS             complement(298..993)
                     /gene="araD"
                     /locus_tag="OQP62_002094"
                     /EC_number="5.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HCS1721644.1"
                     /translation="MLEDLKHQVLEANLALPKHNLVTLTWGNVSAVDRERGVLVIKPS
                     GVDYSVMTADDMVVVSLETGEVVEGHKKPSSDTPTHRLLYQAFPTIGSIVHTHSRHAT
                     IWAQAGQPIPATGTTHADYFYGTIPCTRKMTEAEINGEYEWETGNVIVEAFEKQGINA
                     AQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQSLLDKH
                     YLRKHGAKAYYGQ"
     gene            complement(1134..2636)
                     /gene="araA"
                     /locus_tag="OQP62_002095"
     CDS             complement(1134..2636)
                     /gene="araA"
                     /locus_tag="OQP62_002095"
                     /EC_number="5.3.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose isomerase"
                     /protein_id="HCS1721645.1"
                     /translation="MTIFDNYEVWFVIGSQHLYGAETLRQVTQHAEHVVNALNTEAKL
                     PCKLVLKPLGTSPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLSILNKPLLQ
                     FHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKEAHTRI
                     GAWMRQAVSKQDTRQLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVV
                     NSIGDGDISALIDEYESSYTLTPATQIHGDKRQNVREAARIELGMKRFLEQGGFHAFT
                     TTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMED
                     YTDHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKEDPARLIFNTQTGPAI
                     VASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHH
                     TVFSHALDLNDMRQFAEIHDIEIAVIDNDTRLPAFKDALRWNEVYYGLKR"
     gene            complement(2647..4356)
                     /gene="araB"
                     /locus_tag="OQP62_002096"
     CDS             complement(2647..4356)
                     /gene="araB"
                     /locus_tag="OQP62_002096"
                     /EC_number="2.7.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulokinase"
                     /protein_id="HCS1721646.1"
                     /translation="MAIAIGLDFGSDSVRALAVDCATGDEIATSVEWYLRWQEGRYCD
                     GPNNQFRHHPRDYMESMEAALKAVLAQLSAAQRANVVGIGVDSTGSTPAPIDADGNVL
                     ALRPEFAENPNAMFVLWKDHTAVEEADEITRLCHKPGKVDYSRYIGGIYSSEWFWAKI
                     LHVTRQDSAVAQAAVSWIELCDWVPALLSGTTRPQDIRRGRCSAGHKTLWHESWGGLP
                     PASFFDELDPCINRHLRYPLFSETFTADLPVGTLCAEWAQRLGLPESVVISGGAFDCH
                     MGAVGAGAQPNTLVKVIGTSTCDILIADKQSVGDRAVKGICGQVDGSVVPNFIGLEAG
                     QSAFGDIYAWFSRVLSWPLEQLAAQHPELKTQINASQKQLLPALTDAWAKNPSLDHLP
                     VVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLVASTAFGARAIQECFTEQGI
                     AVNNVMALGGIARKNQVIMQVCCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIP
                     AAQQSMASAVERTLRPRPEQAQRFERLYRRYQQWALSAEQHYLPTAAPAPTTPANQAI
                     LTH"
     gene            4697..5542
                     /gene="araC"
                     /locus_tag="OQP62_002097"
     CDS             4697..5542
                     /gene="araC"
                     /locus_tag="OQP62_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose operon transcriptional regulator AraC"
                     /protein_id="HCS1721647.1"
                     /translation="MAETQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKG
                     YILNLTIRGEGVINNNGEQFVCRPGDILLFPPGEIHHYGRHPDASGWYHQWVYFRPRA
                     YWQEWLTWPTIFAQTGFFRPDEARQPHFSELFGQIISAGQGEGRYSELLAINLLEQLL
                     LRRMAVINESLHPPMDSRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQ
                     LGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEF
                     RARCE"
     gene            5661..6428
                     /locus_tag="OQP62_002098"
     CDS             5661..6428
                     /locus_tag="OQP62_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1721648.1"
                     /translation="MQALLEHFITQSTLYSLIAVLLVAFLESLALVGLILPGTVLMAG
                     LGALIGSGELNFWHTWLVGIIGCLMGDWISFWLGWRFKKPLHRWSFMKKNKSLLDKTE
                     HALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFIGPNLIGCLLWPPFYFLPGI
                     LAGAAIDIPSDMQSGDFKWLLLATALLLWVGGWLCWRLWRSGKAAVDRLTAYLPRSRL
                     LYLAPLTLGIGVVALVVLVRHPLMPVYIDILRKVVGY"
     gene            complement(6467..7174)
                     /gene="thiQ"
                     /locus_tag="OQP62_002099"
     CDS             complement(6467..7174)
                     /gene="thiQ"
                     /locus_tag="OQP62_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter ATP-binding protein
                     ThiQ"
                     /protein_id="HCS1721649.1"
                     /translation="MLKLIDITWLYHHLPMRFTLAVERGEQVAILGPSGAGKSTLLNL
                     IAGFLAPASGTLLIAGEDHTLTPPSRRPVSMLFQENNLFSHLNVQQNIGLGLNPGLTL
                     NASQREKRDAIARQMGIESLMARLPGELSGGQRQRVALARCLVREQPVLLLDEPFSAL
                     DPALRQEMLTLVSDICRERQLTLLMVSHSVEDAARIAPRSIVVADGRIAWQGKTDELL
                     SGQASASALLGIKSHIL"
     gene            complement(7158..8768)
                     /gene="thiP"
                     /locus_tag="OQP62_002100"
     CDS             complement(7158..8768)
                     /gene="thiP"
                     /locus_tag="OQP62_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine/thiamine pyrophosphate ABC transporter
                     permease ThiP"
                     /protein_id="HCS1721650.1"
                     /translation="MATRRQPLIPGWLIPGLCAAALMITVSLAAFLALWLNAPSGAWS
                     TLWRDSYLWHVVRFSFWQAFLSAVLSVVPAVFLARALYRRRFPGRLALLRLCAMTLIL
                     PVLVAVFGILSVYGRQGWLASLWQMLGLQWTFSPYGLQGILLAHVFFNLPMASRLLLQ
                     SLESIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLG
                     GGPQATTIELAIFQALSYDYDPARAAMLALIQMVCCLALVLLSQRLSKAIAPGMTLTQ
                     GWRDPDDRLHSRLTDALLIVLALLLLLPPLVAVVVDGVNRSLPEVLAQPILWQAVWTS
                     LRIALAAGVLCVVLTMMLLWSSRELHQRQQLFAGQTLELSGMLILAMPGIVLATGFFL
                     LLNNSVGLPESADGIVIFTNALMAIPYALKVLENPMRDITARYGMLCQSLGIEGWSRL
                     KVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDNFRTLPFYLYQQIGSYRSQDGA
                     VTALILLLLCFTLFTLIEKLPGRHAKTD"
     gene            complement(8744..9727)
                     /locus_tag="OQP62_002101"
     CDS             complement(8744..9727)
                     /locus_tag="OQP62_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate binding
                     subunit"
                     /protein_id="HCS1721651.1"
                     /translation="MLKKYLPLLLLCAAPAFAKPVLTVYTYDSFAADWGPGPAVKKAF
                     EADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLEAATQTKLFAKSGVA
                     NEAVKVPGGWKNDTFVPFDYGYFAFVYDKSKLKNPPKSLKELVESDQKWRVIYQDPRT
                     STPGLGLLLWMRKVYGDNAPQAWQKLAAKTVTVTKGWSEAYGLFLKGESDLVLSYTTS
                     PAYHIIEEKKDNYAAANFSEGHYLQVEVAARTVASKQPELAEKFLKFMVSPAFQNAIP
                     TGNWMYPVADVALPAGFESLAKPATTLEFTPQQVAAQRQAWISEWQRAVSR"
     regulatory      complement(9759..9858)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(9905..11563)
                     /gene="sgrR"
                     /locus_tag="OQP62_002102"
     CDS             complement(9905..11563)
                     /gene="sgrR"
                     /locus_tag="OQP62_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator SgrR"
                     /protein_id="HCS1721652.1"
                     /translation="MPSGRLQQQFIRLWQCCDGKTQDTTLNELADLLNCSRRHMRTLL
                     NTMQARGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKSA
                     VRQMLISHLGRSFRQGRHILRVLYYRPMHNLLPGTALRRSETHIARQIFSSLTRVNEE
                     NGELEADIAHHWQQISPLLWRFYLRPGIHFHHGRELEMEDVIASLTRINTLPLYSHIT
                     KIDSPTAWTLDIHLSQPDRWLPWLLGQVPAMILPREWETLANFASHPIGTGPYAVRRN
                     TPNQLKILAFDDYFGYRALIDEVNVWVLPDISEEPACGLMLEGPIQGGEKAIESRLEE
                     GCYYLLFDARTPRGAHPQVREWVSHVLSPTNLLYHADEPLQQLWFPAYGLLPRWHHAR
                     PGPGEKPAGLETLTLTFYREHIEHRVIARIMSALLAEHQVHLHIQEIDYDQWHAGEIE
                     SDIWLNSANFTLPLDFSLFAHLCEVPLLQNCIPRDWQDDAAQWRAGEMNLANWCQQLL
                     ANKAIVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP"
     gene            11656..11778
                     /gene="sgrT"
                     /locus_tag="OQP62_002103"
     CDS             11656..11778
                     /gene="sgrT"
                     /locus_tag="OQP62_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001248755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose uptake inhibitor SgrT"
                     /protein_id="HCS1721653.1"
                     /translation="MRQFWLRYFAATEKTSWLACLSAPQRLKMLAELMQWEATD"
     gene            complement(12113..12718)
                     /gene="leuD"
                     /locus_tag="OQP62_002104"
     CDS             complement(12113..12718)
                     /gene="leuD"
                     /locus_tag="OQP62_002104"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HCS1721654.1"
                     /translation="MAEKFTQHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLF
                     NDWRFLDEKGQQPNPEFVLNFPEYQGASILLARENFGCGSSREHAPWALTDYGFKVVI
                     APSFADIFYGNSFNNQLLPVKLSDEQVDELFTLVKANPGIKFEVDLEAQVVKAGDKTY
                     SFKIDDFRRHCMLNGLDSIGLTLQHEDAIAEYENKQPAFMR"
     gene            complement(12729..14129)
                     /gene="leuC"
                     /locus_tag="OQP62_002105"
     CDS             complement(12729..14129)
                     /gene="leuC"
                     /locus_tag="OQP62_002105"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HCS1721655.1"
                     /translation="MAKTLYEKLFDAHVVFEAPNETPLLYIDRHLVHEVTSPQAFDGL
                     RAHHRPVRQPGKTFATMDHNVSTQTKDINASGEMARIQMQELIKNCNEFGVELYDLNH
                     PYQGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQ
                     GRAKTMKIEVTGNAAPGITAKDIVLAIIGKTGSAGGTGHVVEFCGDAIRALSMEGRMT
                     LCNMAIEMGAKAGLVAPDETTFNYVKGRLHAPKGRDFDEAVEYWKTLKTDDGATFDTV
                     VTLRAEEIAPQVTWGTNPGQVISVTDIIPDPASFSDPVERASAEKALAYMGLQPGVPL
                     TDVAIDKVFIGSCTNSRIEDLRAAAEVAKGRKVAPGVQALVVPGSGPVKAQAEAEGLD
                     KIFIEAGFEWRLPGCSMCLAMNNDRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMA
                     AAAAVTGHFADIRSIK"
     gene            complement(14132..15223)
                     /gene="leuB"
                     /locus_tag="OQP62_002106"
     CDS             complement(14132..15223)
                     /gene="leuB"
                     /locus_tag="OQP62_002106"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HCS1721656.1"
                     /translation="MSKNYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSRYD
                     VGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWENLPPESQPERGALLPLRKHF
                     KLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK
                     AFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQSSILWREIVNDVAKAYPD
                     VELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQE
                     FGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADEAATAIEQAINRALEEGV
                     RTSDLARGAAAVSTDEMGDIIARYVAEGV"
     gene            complement(15223..16794)
                     /gene="leuA"
                     /locus_tag="OQP62_002107"
     CDS             complement(15223..16794)
                     /gene="leuA"
                     /locus_tag="OQP62_002107"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016831521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HCS1721657.1"
                     /translation="MSQQVIIFDTTLRDGEQALQASLSAKEKLQIALALERMGVDVME
                     VGFPVSSPGDFESVQTIARTIKNSRVCALARCVEKDIDVAAQALKVADAFRIHTFIAT
                     SPMHIATKLRSTLDEVIERAVYMVKRARNYTDDVEFSCEDAGRTPVDDLARVVEAAIN
                     AGARTINIPDTVGYTMPFEFAGIISGLYERVPNIDKAIISVHTHDDLGIAVGNSLAAV
                     HAGARQVEGAMNGIGERAGNCALEEVIMAIKVRKDIINVHTNINHHEIWRTSQTVSQI
                     CNMPIPANKAIVGSGAFAHSSGIHQDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGR
                     AAVKHRMEEMGYKDTDYNMGHLYDAFLKLADKKGQVFDYDLEALAFINKQQEEPEHFR
                     LDYFSVQSGSSDIATASVKLACGEEIKAEAANGNGPVDAIYQAINRITGYDVELVKYD
                     LNAKGQGKDALGQVDIVVNHHGRRFHGVGLATDIVESSAKAMVHVLNNIWRAAEVEKE
                     LQRKAQNKENNKETV"
     gene            complement(16882..16968)
                     /gene="leuL"
                     /locus_tag="OQP62_002108"
     CDS             complement(16882..16968)
                     /gene="leuL"
                     /locus_tag="OQP62_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leu operon leader peptide"
                     /protein_id="HCS1721658.1"
                     /translation="MSYIVRFTGLLLLNAFIVRGRPVGGIQH"
BASE COUNT         3667 a         4757 c         4847 g         3914 t
ORIGIN      
        1 ttggcgtacc gagattattg aaaacggcaa tgcttttttt cactggcaag gacacgacag
       61 aaaagacgga catcgggata ccattattaa ttatctgtta aatgggcaac gctggcagtc
      121 aacaatcgaa gattatattt tcttccatgc gctggaagga aaagcgtggc agggacatta
      181 tgataatatt attgaatatg tgagttctga tcattacgtc tatcaaagcg catttgctga
      241 atatatcacc gaccagattc atcaacgcgc cccccatggg acgcgttttt agaggcatta
      301 ctgcccgtaa taggcttttg cgccgtgttt gcgtaaatag tgtttatcca gcagggattg
      361 ctgcatgtcg ggcaactgcg gcgcaagctg gcggcagaag atccccatat aggccacttc
      421 ttccagcacg atggcgttat gcacggcatc ctcggcattt ttaccccagg caaacgggcc
      481 gtgcgaatgg acaagcacgc cgggcatttg agcggcgtta atgccttgtt tttcaaaggc
      541 ttcaacaatg acattgcccg tttcccattc atactcgcca ttaatttccg cctcggtcat
      601 tttgcgagtg cagggaatcg taccgtagaa atagtcggcg tgggtggtgc ccgtcgccgg
      661 aatcggctga cccgcctgcg cccagatagt cgcgtggcgc gaatgggtgt gtacgatgct
      721 gccgatagtc ggaaatgcct gatataacag acggtgggtt ggcgtatcgg acgacggttt
      781 cttatgacct tcaacgactt caccggtctc caggctgacc accaccatat cgtcagcggt
      841 catgacgcta taatcgacgc cggacggctt aatcaccagt acgccgcgtt cgcgatcgac
      901 ggcgctaacg ttaccccagg tgagggtgac caggttgtgt tttggcagcg ccagattggc
      961 ttccagtacc tggtgtttga gatcttctaa cattgttttc tccctgccgg atggcgcttc
     1021 gcttatccgg cctacgagcg acggtgtgcc ggatggcgac ataaatgcct tattcggcct
     1081 acaggaccgt aggcccggta aacgcagtgc caccgggcat tcagacacca cttttagcgt
     1141 tttaaaccgt aatacacctc gttccagcgc agcgcgtcct taaaggctgg cagacgggta
     1201 tcgttatcaa tcaccgcgat ttcgatatcg tgtatttctg cgaactggcg catatcgttc
     1261 agatccagcg cgtggctgaa gacggtatgg tgcgcgccgc cagccagaat ccacgcttcg
     1321 gaggcggtcg gcagatccgg ctgcgccttc cacagcgcgt tagccaccgg cagtttcggc
     1381 agggagtgcg gcgtttttac ggtgtcaatg cagttgacca gcaggcggta acgatcgccg
     1441 aggtcgatca ggctggcgac gatcgccggg ccggtttggg tattgaaaat caaacgcgcc
     1501 ggatcttcct tgccgccaat gccgaggtgc tggacgtcga ggatcggttt ctcttccacc
     1561 gcgatggagg gacacacttc cagcatgtgc gagccgagca ccagatcgtt gcctttctcg
     1621 aagtggtcag tgtaatcctc cataaatgag gtgccgccct gcagaccggt tgacatcact
     1681 ttcataatgc gaagcagagc ggcggttttc cagtcgcctt cgcccgcaaa gccgtagccc
     1741 tgctgcatca gacgctgtac ggccagaccc ggaagttgtt tcagaccgtg taaatcttca
     1801 aaagtagtag tgaatgcgtg gaagccgccc tgttccagga aacgcttcat ccccagttca
     1861 atgcgcgccg cttcccgcac gttctggcgt ttatcgccgt ggatctgggt ggcgggcgtc
     1921 agggtatagc tgctttcata ctcgtcaatc agagcgctga tatcgccgtc gccgatagaa
     1981 ttcaccacct gcaccagatc gccgaccgcc caggtattga ccgaaaagcc aaatttgatt
     2041 tgcgcggcca ctttatcacc gtcagtcact gcgacttcac gcatattgtc gccgaagcgg
     2101 cagactttta gctggcgggt atcctgttta gagaccgcct ggcgcatcca ggcgccgata
     2161 cgcgtatggg cctctttatc ctgccagtgg ccagtgacga ccgcgtgctg ctggcgcatc
     2221 cgcgcgccga taaaaccgaa ctctcggccg ccatgcgcag tctggttcag gttcataaag
     2281 tccatatcga tgctgtccca cggcagggcg gcgttaaatt gggtatggaa ttgcagtagt
     2341 ggtttgttaa ggatactcag cccgttgatc cacattttgg ccggggagaa ggtgtgcagc
     2401 cagaccacca gccccgcgca gcgatcgtca taattggcgt cacgacaaat ggcggtaatc
     2461 tcatccggcg aggtgcccag cggttttaat accagtttac atggcagttt ggcttcggta
     2521 ttcagcgcgt tgaccacatg ctcggcatgt tgggtgacct ggcgcagggt ttctgcgcca
     2581 tacaaatgct ggctgccaat cacaaaccat acttcataat tatcaaaaat cgtcattgtc
     2641 gtgtccttaa tgagtcagga ttgcctgatt ggccggggtc gttggcgccg gcgcggcagt
     2701 cggaagataa tgttgttctg cgcttagcgc ccactgctgg tagcggcggt aaagccgttc
     2761 gaagcgttgc gcctgttcag ggcggggacg cagagtgcgt tctaccgcgc tcgccatgct
     2821 ttgctgggcg gcaggaatat cggcatggac tttcgcggca acggcggcaa agatagcggc
     2881 gcctaatgcg caacattggt cggaagcgac gatctgcaac ggacgattca gtacgtcgca
     2941 gcagacctgc ataatgacct gatttttacg ggcgatgccg ccaagcgcca tcacgttatt
     3001 gaccgcgata ccctgctcgg taaaacactc ctgaatggcg cgcgcgccga aggcggtcga
     3061 ggcgaccaga ccgccaaaca gcgctggcgc gtcggtggcg agattgagat cggtaatgac
     3121 gcctttcaga cgctggttgg cattgggtgt acggcgacca ttgaaccagt cgagcaccac
     3181 cggcaggtga tccagggacg gatttttcgc ccaggcgtcg gtgagcgctg gcaatagctg
     3241 cttctggctg gcgttaatct gggttttcag ttccgggtgc tgcgcggcaa gttgttccag
     3301 cggccagctc aacacgcggc taaaccaggc gtagatgtcg ccgaaagcgg actggcccgc
     3361 ttccagaccg ataaagttcg gcaccacgct gccgtcaacc tgaccgcaaa tgcctttcac
     3421 ggcgcgatcc ccgacgctct gtttatccgc aatcagaatg tcgcaggttg acgtgccgat
     3481 gacttttacc agcgtattgg gctgtgcgcc cgcgccgacc gcgcccatgt gacagtcgaa
     3541 cgcgccgccg gaaatcacca cgctttccgg caagccgagg cgctgcgccc attcggcgca
     3601 cagggtgccc acgggcagat cggcggtgaa ggtttcgcta aataacgggt agcgcagatg
     3661 acggttaatg cacggatcga gttcatcaaa gaagctcgcg ggcggcagac cgccccagct
     3721 ttcatgccac agtgttttgt gcccagcgct gcagcggcca cggcggatat cctgcgggcg
     3781 agtggtgccg gaaagcagcg ccggcaccca gtcacacagt tcaatccacg agacggcggc
     3841 ctgcgcgacg gcgctatcct ggcgggtgac gtgcagaatc ttcgcccaga accattcgct
     3901 ggagtaaatg ccgccaatat agcgggagta gtcgacctta cctggcttat ggcacagacg
     3961 agtgatttcg tcggcttctt ccacggcggt gtgatctttc cacagcacaa acatcgcatt
     4021 cgggttctcg gcgaactccg gacgcagcgc caggacgtta ccgtcggcgt caatcggcgc
     4081 tggcgtagaa ccggtgctgt caacgccaat gccaacgaca tttgcgcgtt gcgcggcgct
     4141 taattgtgcc agaacggctt tcagcgcggc ctccattgac tccatgtagt cgcgcggatg
     4201 atgacggaac tggttgttcg ggccgtcgca ataacggcct tcttgccagc gcagatacca
     4261 ctctacgctg gtggcgatct cgtcgccggt ggcgcagtcc actgccagag cgcgcactga
     4321 atcactgcca aaatcgaggc caattgcaat tgccatcgtc ttactccatc cagaaaaaca
     4381 ggtatggaga aacagtagag agtcgcggca aaaaccgtca ggcaggatcc gctaatctta
     4441 tggacaaaaa tgctaatgct ttgcaaagtg tgacgctgtg caaatattca atgtggacat
     4501 tccagccata gttatagaca cttctgttac ttaattttat cgcctgaact gtacgctttt
     4561 gttacaaagc gcttttcaca agcggggttg atacgtgctt tcatcaagcg caaggtcttg
     4621 cggagacgga agctctgtcg tcctggtcaa tatggacaat ttgtttcttc tctgaacatc
     4681 ggggggtaga gaaatcatgg ctgaaacgca aaatgatccg ctattgccgg gatattcatt
     4741 taatgcccat ctggtcgccg ggctgacgcc aattgaagcg aatggatatc tggatttttt
     4801 tatcgatcgt ccgttgggca tgaagggata tattcttaac ctgaccatcc gcggagaggg
     4861 cgtcattaat aataatggcg agcagtttgt ctgtcggcct ggcgatatat tattgtttcc
     4921 gccgggcgag attcatcact atggacggca tccggatgcc agcgggtggt atcaccagtg
     4981 ggtttatttc cggcctcgcg cctactggca ggagtggctg acctggccga caatctttgc
     5041 tcagacagga tttttccgcc cggacgaggc gcgccagccg catttcagcg aactgttcgg
     5101 gcagatcatc agcgccgggc aaggggaagg tcgctattct gagctactgg cgatcaatct
     5161 gctggagcag ttgttgctca gacgtatggc ggtaattaat gagtcgttgc atccgccgat
     5221 ggatagccgt gtgcgcgatg cctgccagta tatcagcgac catctggcag acagtcattt
     5281 tgatatcgcc agcgtcgccc agcatgtctg cctgtcgccc tcccggttat cgcatctgtt
     5341 ccgccagcag ttaggcatta gcgtattgag ctggcgcgaa gatcagcgta tcagccaggc
     5401 gaaactcctg cttagcacca cgcgaatgcc gatagcgacc gttgggcgca atgttggatt
     5461 tgacgatcag ctctattttt cgcgggtatt taaaaaatgc accggggcaa gtcctagcga
     5521 gttcagggcc agatgtgaat aaaaagtgaa tgatgtgtcc acaaagatgt cataagccgt
     5581 aactattcgg ataattgacg gcttgacgaa gggggacggg gtaagcagaa tccctgcttc
     5641 atcacgctga cggacacact atgcaagcac tgctggaaca ctttatcacc caatccactc
     5701 tgtattcgct catcgccgtg ttgctggtcg ccttcctgga atcgctggcg ctggtggggt
     5761 tgattttacc cggcacggta ctgatggcgg ggctgggcgc gcttatcggc agcggcgagc
     5821 tcaatttttg gcatacctgg ctggtgggta ttatcggctg tctgatgggc gactggattt
     5881 cgttctggct ggggtggcgc tttaaaaagc cgctacaccg ctggtctttt atgaaaaaga
     5941 acaagtcgct gctggataaa accgaacatg cgctgcatca gcacagtatg ttcacgatcc
     6001 tggtcggacg ttttgtcggt ccgacgaggc cgctggtgcc gatggtggca gggatgctgg
     6061 atcttcccgt agcgaaattt attgggccaa acttgattgg ctgtttgctg tggccgccgt
     6121 tttatttcct gccgggcatt ctggcgggag cggcaatcga tattccttcc gatatgcaga
     6181 gcggagattt caaatggctg ctgctggcga cggcgttgct gctgtgggtc ggaggctggc
     6241 tatgctggcg gctgtggcgc agcggcaaag cggcagtcga tcgtttaacc gcgtatctcc
     6301 cccgcagccg tttgctgtat ctggcgccgt tgacgctcgg gatcggcgtg gtcgcgctgg
     6361 tggtgctggt tcgccacccg ctgatgccgg tgtatatcga tattctgcgc aaagttgtgg
     6421 gttactaacg attcctttgc cggatggcgg cttcgcctta tccggcctac aaaatatggg
     6481 atttgatgcc caatagcgct gaggcgctgg cttgaccgct tagtagctcg tctgttttgc
     6541 cttgccacgc aatgcgtccg tcggcgacga cgattgaccg gggcgcaatc cgcgccgcat
     6601 cttccacgct gtgcgagacc atcaacagcg tgagctgtcg ctcgcggcag atatcgctga
     6661 ccaacgtcag catctcctgg cgcagcgcgg gatcgagcgc ggagaacggt tcatccagca
     6721 gcagcaccgg ctgttcacgt accaggcagc gcgccagcgc tacccgctga cgctgcccgc
     6781 cggacagttc gcccggtaaa cgcgccatca gactctcaat gcccatctga cgtgcgatag
     6841 cgtcccgttt ttcccgctgg ctggcgttga gcgttaaccc agggtttagc cccagaccga
     6901 tattttgctg cacattcagg tggctgaata aattattctc ctgaaacagc attgagaccg
     6961 gacggcgtga gggcggcgta agcgtatggt cttcgccggc aatcagtagc gtaccgctgg
     7021 caggcgcaag aaaaccggca attaaattca acaacgtgct tttccccgcg ccgctggggc
     7081 caagaatcgc cacctgctcg ccgcgttcta ccgccagcgt aaaacgcatc ggcaaatgat
     7141 ggtaaagcca ggtgatatca atcagtttta gcatgtcggc ccggtagttt ctctatgagg
     7201 gtaaataacg taaaacagag cagcaacagt atcagcgcgg tcaccgcgcc gtcctggctg
     7261 cggtaggagc cgatctgctg atacagataa aacggcagcg tgcggaaatt gtcattgccg
     7321 aaaagcgcga cgacgccaaa atcaccgata gaaagtacgc aggcaaacgc cagcgcctgc
     7381 gccagcggac gtttcagcgc ccgcagttcc acgaccttta accgcgacca gccttcaatt
     7441 cccaatgact ggcacagcat tccataacgg gcggtaatat cgcgcattgg gttttccagg
     7501 acttttagcg cgtaggggat tgccatcagc gcattggtga aaatcacgat gccgtcggcg
     7561 gattccggta agccaacgct gttattgagc agtaaaaaga agcctgtcgc cagcacgatc
     7621 cccggcatcg cgaggatcaa cattccgctg agttccagcg tttgtccggc gaatagttgc
     7681 tggcgttggt gtagctcgcg gctactccac agcagcatca tggtcagcac cacacacaga
     7741 acgcccgccg ccagcgcaat gcgtagcgat gtccagacag cctgccacag aatgggttgc
     7801 gccagcactt ccggcaggct gcggttgacg ccatcgacca ccacggcgac cagcggcgga
     7861 agcagcaata gtagcgccag cacgattaat aaggcgtccg tcagacggct gtggagacga
     7921 tcgtcaggat cgcgccagcc ctgcgtcagc gtcatccccg gcgcaatcgc tttgctcaac
     7981 cgttgactta gcagtaccag cgccaggcag cagaccatct ggattaatgc cagcatcgcc
     8041 gcgcgggcgg gatcgtagtc ataactgagc gcctgaaaga tagccagttc gatagtggtg
     8101 gcctgcgggc cgccgccgag cgacaggacc gttgcgaaac tggcgaagca gagcataaaa
     8161 atcagcgccg cgacgggcgg aatttggcgg cgcagccacg gccattcgac aaaacggaaa
     8221 aaatgccagc cgcgcatacc gagctgggcg gcgagctggc gctgctcgcc gggaatgctt
     8281 tccaacgatt gcagcaacaa acggctcgcc attggcagat taaaaaagac gtgcgccagt
     8341 aaaatgccct gcaagccgta gggggagaat gtccactgaa gccccagcat ctgccacagc
     8401 gaggccagcc agccctgacg tccatacacg ctaagaatgc cgaacacggc aaccagtacc
     8461 ggcagaatca gcgtcatggc gcacagacgc agcagcgcca gacgtccagg aaaacggcgt
     8521 cgataaagcg cgcgggcgag aaaaaccgcc gggaccacag acagcactgc ggacagaaac
     8581 gcctgccaga atgagaagcg caccacatgc cacagatagc tatcccgcca gagtgtcgac
     8641 cacgcgcccg acggcgcgtt cagccaaagc gccagaaagg ccgccagcga gacggttatc
     8701 atcagcgcgg cggcgcacag ccccggaatc agccagccgg gaattaacgg ctgacggcgc
     8761 gttgccattc gctaatccat gcctggcgtt gtgctgccac ttgttgcggc gtgaattcca
     8821 gcgttgtggc gggtttggcc aatgattcaa accctgcggg taaggcgacg tccgctaccg
     8881 ggtacatcca gttgccggtg ggtatggcgt tctgaaacgc cggagaaacc ataaatttga
     8941 ggaatttctc cgccagttcc ggctgcttac tggcgacggt acgcgccgcg acttctacct
     9001 gtaagtaatg gccttcgctg aagttcgcgg cggcgtaatt gtccttcttc tcttcaataa
     9061 tgtgatacgc cggagaggtg gtgtaactga gcaccaaatc gctttcacct ttcagaaata
     9121 aaccgtaggc ctcgctccag cctttcgtca ccgtcaccgt tttggccgcc agtttttgcc
     9181 aggcctgcgg cgcgttatcg ccataaactt tgcgcatcca cagtaacagc cccagccctg
     9241 gcgtactggt acgcggatcc tgataaatca cccgccattt ttgatcgctc tcgaccagtt
     9301 ctttcaggct tttcggcgga tttttcagct tgcttttatc gtagacaaag gcgaaatagc
     9361 cgtaatcgaa cggcacaaat gtgtcgtttt tccagccgcc gggcaccttg accgcctcat
     9421 tcgccacgcc gcttttggca aagagtttag tttgcgtggc cgcctccagc agattattgt
     9481 ccagccccaa caccacatcg gctttgctgt tcttcccctc catccgcagg cggttgagca
     9541 gcgaaacgcc atcctccagc gccaccagtt tcagctcgca gttgcaatcg gcttcaaacg
     9601 cttttttcac cgccgggcct ggcccccagt cggcggcgaa cgagtcgtag gtatagacgg
     9661 tgagaacggg tttggcgaaa gcaggcgccg cgcacaggag taaaagcgga agatattttt
     9721 ttaacacttt gcacctcagt taaagagtgg caaaggactt gagaggtagc ctcaaatccc
     9781 ttcgccggca ttatccggat caggttcgac gggtattttc tcagcgcgcg catgagcgcg
     9841 gcaccccgtt gagttcggcg ttagtgtagt gattttgttg ccgggcagca atcaagagct
     9901 ggcgttaagg atctggcggc gcaaaccacg ccgatttaaa atcaaaccag ccgagggtat
     9961 tcatgcgcag cccgcgcata ctgcgttgtc cctggataat cagccagtgg tggatcaacg
    10021 gcacaatcgc tttgttggcc agcagttgct ggcaccagtt cgccaggttc atctcgccag
    10081 cgcgccactg cgcggcgtcg tcctgccagt cgcgcggaat gcagttctgc aagagcggta
    10141 cttcgcacag gtgcgcgaac agcgagaaat ccagcggcag cgtaaagtta gcgctattga
    10201 gccagatatc gctttcgatc tcgccggcgt gccattgatc gtagtcgatc tcctgaatat
    10261 gcagatgcac ctgatgttca gccagaagcg cgctcatgat acgggcgata acccggtgct
    10321 caatgtgttc gcgatagaag gtcagcgtga gggtttccag cccggcgggt ttttcgcccg
    10381 ggcctggacg ggcgtggtgc cagcgcggta aaagcccata ggccgggaac cagagctgct
    10441 gtagcggttc atcggcatga tagagtaaat tggtggggga gaggacgtgg cttacccatt
    10501 ctctgacctg cggatgcgcg ccgcgcggcg ttctggcgtc gaatagcagg taatagcacc
    10561 cctcttccag tcggctttct atcgcttttt caccgccttg tattggccct tccagcatca
    10621 agccgcaggc cggttcttca ctgatatccg gcagtaccca gacgttcact tcgtctatca
    10681 acgcccgata gccgaagtaa tcatcaaagg cgagtatctt gagctggttt ggcgtattac
    10741 gccgcacggc ataaggcccg gtgccgatag ggtggctggc gaaattagcc agcgtttccc
    10801 actcccgcgg caaaatcatc gccgggacct ggcccagcag ccacggcaac cagcgatccg
    10861 gctgggaaag atgaatatcc agcgtccacg cggtagggga gtctatcttt gtgatgtgcg
    10921 agtaaagcgg aagcgtattg atacgcgtca gcgaggcgat gacatcttcc atctccagct
    10981 cgcggccatg atgaaaatga atgccggggc gcaggtagaa gcgccacagt aaaggggaaa
    11041 tttgctgcca gtggtgcgca atgtccgctt ccagttcccc gttttcctca tttacccgcg
    11101 tgagcgaact gaaaatttgc cgggcaatat gagtttccga gcgacgtaat gcggttcccg
    11161 gcaggagatt gtgcatcgga cgatagtaaa gaacccgcag aatatgccgc ccctggcgga
    11221 agctgcgtcc cagatgggaa atcagcattt gcctgacagc gcttttatcg ccgaccagtt
    11281 gtaccagttg atcgattcga tcttgttcca gcaggtcttc cgcccgctgc tgttgcagcg
    11341 ccagtccggt atacaggaac gtcagacgcg aacgctttcc gcgtccgacc tcggcttccc
    11401 atgttagcca accgcgcgcc tgcatcgtat ttagcagcgt acgcatatgg cgacgcgaac
    11461 agttcagcag atccgccagc tcattaagcg tggtgtcttg cgttttaccg tcacaacatt
    11521 gccagagacg gataaattgt tgttgcaggc gacctgaggg cataaaaggg gaactccgat
    11581 gaaaaactca gcaattttat tatccctata ttaggccaat aatatctttc gatgaagcaa
    11641 gaggaagagg tcactatgcg ccagttctgg ttgagatatt ttgccgcgac ggaaaaaacg
    11701 tcctggctgg cttgcctgag cgcgccgcag cgcttaaaaa tgctcgcgga actgatgcag
    11761 tgggaggcga ccgattgaag ccaattgcag acatcatgtg tgactgagta ttggtgtagg
    11821 cgatagccta aaatcacccg ccagcagata atatctgctg gcttttttat ttcggctgtt
    11881 tctggatgac gacgatggga cggcgtctca acgggatttc tgcggcggtt tctgtggtca
    11941 cgcgggtgat gaccgggcga gtaaaagacg tataaaaaat gccggaatat ccccggcatg
    12001 agcgactgat gagtaaccag gcgcttgatg gcgctacgct tatcaggcct acagaatata
    12061 gtggcaacct ggtgatattg cataccctgt aggcccggta aggcgtgaaa ggttaccgca
    12121 taaatgccgg ttgtttattt tcgtactcgg caatcgcgtc ttcgtgctgc agcgtcagcc
    12181 cgatgctgtc cagaccgttc aacatgcagt ggcggcggaa gtcgtcgatt ttaaaactgt
    12241 aggtcttatc gcctgctttc accacctgtg cttccagatc cacttcaaat ttaatgcccg
    12301 gattggcttt caccagcgta aacagctcat cgacctgttc gtcgcttaac ttcaccggca
    12361 gcagttggtt attgaaactg ttgccgtaga agatgtcggc gaagcttggc gcgatcacca
    12421 ctttaaaacc gtaatcggtc aacgcccacg gcgcgtgttc gcgtgaagag ccgcagccaa
    12481 agttttcccg cgccaacagt atcgacgcgc cttgatattc cggaaagttc aacacgaatt
    12541 ccggatttgg ctgttggccc ttttcgtcca ggaaacgcca gtcgttaaac agatgggcgc
    12601 caaaaccggt gcgcgtaacc ttctgcaaaa actgtttagg gataattgca tcggtatcga
    12661 cgttggcggc atccagtggg acaaccaggc cggtatgctg ggtaaatttc tctgccatgg
    12721 tagtttcctt atttgatgct gcgaatatcg gcgaagtggc cggtaacggc ggcagcggcg
    12781 gccatcgccg ggctgactaa atgcgtgcga cccccgcggc cctgacgacc ttcaaagtta
    12841 cggttgctgg tggaggcgca gcgctcgccc gggttcaggc ggtcattatt catggccagg
    12901 cacatggaac agcctggtaa gcgccattca aatcctgctt cgataaagat cttgtccaga
    12961 ccttccgctt ccgcctgcgc tttcaccgga cctgaacccg gcaccaccag cgcctgcacg
    13021 ccaggcgcaa ctttgcgccc tttggcgact tccgccgccg cgcgcaaatc ttcaatacgc
    13081 gaattggtac aagagccgat aaagacttta tcaatagcaa cgtctgttaa cggtacgccc
    13141 ggctgtaagc ccatataagc cagcgctttt tcggcgctgg cgcgctcaac cggatcgcta
    13201 aaagaggcgg gatcggggat gatgtcggtg acggaaatca cctggcccgg attagtgccc
    13261 caggtcacct gcggcgcgat ctcttctgct cgcagggtga cgacagtatc aaaggtcgcg
    13321 ccgtcatcgg ttttcagcgt tttccagtac tcgacggctt cgtcaaaatc gcggcccttc
    13381 ggcgcgtgca aacgcccttt tacgtagttg aaagtggttt catccggggc gaccagaccg
    13441 gctttggcgc ccatctcaat cgccatattg cacagcgtca tgcggccttc catactcagc
    13501 gcgcggatag cgtcgccgca aaattcaacc acgtgtccgg tgccgccggc gctaccagtt
    13561 ttaccgatga tcgccagcac gatgtctttg gcggtaatgc ccggtgcggc gttgcccgtg
    13621 acttcaatct tcatggtttt agcgcgcccc tgtttcaggg tttgcgtcgc cagtacatgt
    13681 tctacctcag aagtgccgat gccgaaggcc aacgcgccaa acgcgccgtg ggtagcggtg
    13741 tgggagtcgc cgcagacgat ggtcataccc ggcagggtaa cgccctgttc cggccccatc
    13801 acatggacga tgccctgata tgggtgattc aggtcataca gctcgacgcc gaactcgtta
    13861 cagttcttaa tcagctcttg catctggata cgcgccattt caccagaagc attaatgtct
    13921 ttagtctgcg tcgagacgtt gtgatccatc gtggcgaagg ttttccccgg ctgacgtacc
    13981 ggacgatggt gcgcgcgcag accgtcaaac gcctgcggcg aggtcacttc gtgtaccagg
    14041 tggcgatcga tgtacagcag cggcgtttcg tttggcgcct caaagaccac gtgggcatca
    14101 aataattttt cgtataacgt tttggccatg attacacccc ttctgcgaca tagcgggcga
    14161 taatatcgcc catctcatcg gtactgactg cggcagcgcc cctggctaaa tcgctggtgc
    14221 gaaccccctc ttctaatgcg cgattgatcg cctgttcaat ggccgttgcc gcctcatcgg
    14281 catccaggct gtagcgcagc agcagcgcca gcgacaggat ctgcgcaatt gggttggcga
    14341 tatttttccc agcgatatcc ggcgcggagc cgccagccgg ttcatacagg ccaaactctt
    14401 gctcgttcag gctggcggag ggcaacatcc ccattgagcc ggtgatcatg gcgcattcgt
    14461 cggacagaat gtcgccgaac aggttagagc acagcaggac gtcaaactgc gacgggtctt
    14521 taatcaactg catggtggcg ttatcgatat acatgtgcgc gagttccaca tcgggatacg
    14581 ctttcgcgac atcattgacg atctcacgcc acaggataga gctttgcagt acgttggctt
    14641 tatctataga ggtgacttta cggcggcgtt tacgcgccga ttcaaaggcg atacgggcaa
    14701 tgcgctcgat ctcaaagcgg tgataaactt cggtatcaaa ggctttttcg tactgaccgc
    14761 tgccttcacg gccttttggc tgtccgaaat agatcccgcc ggtcagctcg cgcacgcaca
    14821 ggatatcgaa accgttagcg gcgatatcgg cgcgcaacgg gcaaaatgct tccagtccct
    14881 gatacagttt cgccggacgc aggttactga ataatttgaa atgtttgcgc agcggcagca
    14941 gggcgccgcg ctccggctgg ctttccgggg gcaaattttc ccatttcggg ccgccgacgg
    15001 agccaaacag aatggcatcc gcctgctcac acccttcaac ggtggctttc ggcagtggat
    15061 gaccatgatt gtcgatagca ataccgccga cgtcatagcg gctggtggtg atacgcatat
    15121 caaaacggct gcgtaccgca tccataactt tcagggcttg cgccatgact tccgggccga
    15181 taccgtcgcc cggcagtacg gcaatatgat agttcttcga cattacacgg tttccttgtt
    15241 gttctcttta ttttgagctt tgcgttgcaa ttctttttca acttcggcgg cgcgccagat
    15301 attgttcagt acgtgtacca tcgctttggc ggaggattcg acgatatccg tcgccagccc
    15361 gacgccgtgg aagcggcgac catgatggtt cacgacgata tcgacctgac ccagcgcgtc
    15421 tttgccctgg cctttggcgt tcaggtcgta tttaaccaac tcaacgtcgt agccagtgat
    15481 gcggttaatc gcctgataga tggcgtcgac cgggccgttg ccgttcgccg cctcggcctt
    15541 gatctcttca ccacaggcca gcttcacgga agcggtggcg atatcgctgg agccggactg
    15601 cacgctgaag taatccagac ggaaatgctc tggttcttct tgctgtttat taataaacgc
    15661 cagcgcttcc aggtcatagt cgaacacctg gccttttttg tccgccagct tcaggaacgc
    15721 gtcgtacagg tggcccatgt tgtagtctgt gtccttgtaa cccatctctt ccatgcgatg
    15781 tttcacggcg gcacggccag agcgggaggt caggttcagc tgtatctggt tcagaccgat
    15841 ggactctggc gtcatgattt catagttttc gcggttcttg aggacgccat cctggtggat
    15901 gccggaagag tgggcaaaag cgccgctgcc aacaatcgct ttgttggccg ggatcggcat
    15961 gttacagatc tggctgacgg tctggctggt gcgccagatt tcgtggtgat tgatgttggt
    16021 gtgtacgttt atgatgtctt tgcgcacttt aatcgccatg atcacctctt ccagcgcgca
    16081 gttaccggca cgttctccga taccgttcat cgcgccttca acttgacgcg cgcccgcatg
    16141 tactgccgcc agcgagttgc ctaccgctat ccctaaatcg tcgtgggtat gaacggagat
    16201 gatagctttg tcgatattgg ggacacgttc atacagaccg gaaatgattc ccgcgaactc
    16261 aaacggcatg gtatagccca cggtatcggg aatattgatg gttctcgcgc cggcgtttat
    16321 agcggcttcc accacgcgcg ccagatcgtc aacaggcgtc cggccagcat cctcgcagga
    16381 gaactccacg tcatcagtgt aattacgcgc ccgcttaacc atgtataccg cgcgttcgat
    16441 gacctcatcc agcgtgctgc gcagcttggt ggcgatgtgc attggcgagg tggcgataaa
    16501 agtatggata cgaaacgcgt cggcgacctt cagcgcctgt gccgcaacgt cgatgtcttt
    16561 ttctacacaa cgcgccaggg cgcaaacgcg gctgtttttg atggtgcggg cgatggtttg
    16621 gacggattca aaatcacccg gagaagagac cgggaagccc acttccatga catcgacacc
    16681 catgcgctca agggccaggg caatctgcag cttctctttc gcgctcaggc tggcctgtaa
    16741 cgcttgttcg ccgtcgcgta aggtcgtatc aaaaataatg acttgctggc tcatgatgtg
    16801 gtccttgtct ccaggggcgc cttgcgtcag gcataaaaaa acccgcacaa cggcgcgggt
    16861 tttgtttgac ttcgagctga cttaatgttg aatgccgccc accggtctac cgcgcacaat
    16921 aaatgcgttg agtagtagta gcccagtgaa acgaacgata tatgacatta attcagctcc
    16981 agcgaatgcg ttatgctttt agtggtactg gatatgccgt ttaatgtcaa ctctattttc
    17041 tgtcgccatt gcattttgtt gacgatatcc ggatacgtac tttagctaat tgtgctgggc
    17101 tgcgcgtcca ataaaggata aaagaacgag tggacattca tacttttcat tgtttgaaat
    17161 atttaggcat ttttgtttgc aaatt
//
LOCUS       DAJVSD010000079        17060 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.079, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000079 DAJVSD010000000
VERSION     DAJVSD010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 17060)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17060)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17060
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.079"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            27..410
                     /gene="grcA"
                     /locus_tag="OQP62_002109"
     CDS             27..410
                     /gene="grcA"
                     /locus_tag="OQP62_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007728348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autonomous glycyl radical cofactor GrcA"
                     /protein_id="HCS1721659.1"
                     /translation="MITGIQITKAANDDLLNSFWLLDSEKGEARCIVAKSGFAEDEVV
                     AVSKLGEIEYREIPMEVKPEVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSG
                     YAVRFNSLTPEQQRDVIARTFTESL"
     gene            complement(472..1059)
                     /gene="eamB"
                     /locus_tag="OQP62_002110"
     CDS             complement(472..1059)
                     /gene="eamB"
                     /locus_tag="OQP62_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/O-acetylserine transporter"
                     /protein_id="HCS1721660.1"
                     /translation="MTPMLLSAFWTYTLITALTPGPNNILALSAATAHGFRQSIRVLA
                     GMSLGFLVVMLLCAGIAFSLAVIDPAIIHLLSWVGAAYILWLAWKIATSPAADEKVRP
                     KPVGFWVSFGLQFVNVKIILYGITALSTFVLPQTQALNWVIGVSILLALIGTFGNVCW
                     ALAGHLFQRAFRHYGRQLNIILALLLVYCAVRIFY"
     gene            1162..2030
                     /locus_tag="OQP62_002111"
                     /pseudo
     CDS             1162..2030
                     /locus_tag="OQP62_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311470.2"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            complement(2077..3411)
                     /gene="srmB"
                     /locus_tag="OQP62_002112"
     CDS             complement(2077..3411)
                     /gene="srmB"
                     /locus_tag="OQP62_002112"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase SrmB"
                     /protein_id="HCS1721661.1"
                     /translation="MTVTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDV
                     LGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKH
                     THLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEAD
                     RMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKDFAERLLEDPVEVSANPSTRE
                     RKKIHQWYYRADNFEHKVALLKHLLKQDDATRSIVFVRKRERVHELAETLRLAGINNC
                     YLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLH
                     RIGRTGRAGRKGTAISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPSEKLTG
                     KPSKKVLAKRAEKKKEKEKEKPRVKKRYRDTKNIGKRRKPSGTKMQEQSSEE"
     gene            3541..4278
                     /gene="trmN"
                     /locus_tag="OQP62_002113"
     CDS             3541..4278
                     /gene="trmN"
                     /locus_tag="OQP62_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(1)(Val)
                     (adenine(37)-N(6))-methyltransferase TrmN"
                     /protein_id="HCS1721662.1"
                     /translation="MSQSGSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAD
                     VKRILDIGTGSGLLALMLAQRTDDSVPVDAVELDAGAAMQAQENVAHSPWPHRITVHT
                     DDIQRWAPRQTVRFDLIISNPPYYEPGVECSTPQREQARYTATLDHQTLLAIAADCIT
                     EDGFFCVVLPEQIGNAFTQQALNMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFS
                     DRLVIRGSDQNYSESYTALTQAFYLFM"
     gene            complement(4263..5885)
                     /gene="nadB"
                     /locus_tag="OQP62_002114"
     CDS             complement(4263..5885)
                     /gene="nadB"
                     /locus_tag="OQP62_002114"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HCS1721663.1"
                     /translation="MMTTPELSCDVLIIGSGAAGLSLALRLAEKHKVIVLSKGPVSEG
                     STFYAQGGIAAVFDETDSIASHVEDTLIAGAGICDRHAVEFVASNARTCVQWLIDQGV
                     LFDTHVQPNGKESYHLTREGGHSHRRILHAADATGKEVETTLVSRAQNHPNIQVLERS
                     NAVDLIISDKIGLPGPRRVVGAWIWNRNKEWVETCHAKSVVLATGGASKVYQYTTNPD
                     ISSGDGIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGSR
                     FMPDVDERGELAPRDIVARAIDHEMKRLGADCMFLDISHKPDDFVRQHFPMIYAKLLD
                     LGMDLTKEPIPIVPAAHYTCGGVVVDDYGRTDVDGLYAIGEVSYTGLHGANRMASNSL
                     LECLVYGWSAAMDIDRRMPSVHSVDVLPAWDESRVENADERVVIQHNWHELRLLMWDY
                     VGIVRTTKRLERALRRITMLQQEIDEYYANFRVSNNLLELRNLVQVAELIVRCAMMRK
                     ESRGLHFTLDYPQQLAESGPSILSPLTPHINR"
     gene            6149..6313
                     /gene="rseD"
                     /locus_tag="OQP62_002115"
     CDS             6149..6313
                     /gene="rseD"
                     /locus_tag="OQP62_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rpoE leader peptide RseD"
                     /protein_id="HCS1721664.1"
                     /translation="MEDKTCLQHDKQKQMRNGTLRNIDTLTCCLLIVRLMEWRFESAW
                     KFGLGRHYLG"
     gene            6310..6885
                     /gene="rpoE"
                     /locus_tag="OQP62_002116"
     CDS             6310..6885
                     /gene="rpoE"
                     /locus_tag="OQP62_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005070454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HCS1721665.1"
                     /translation="MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG
                     DVPDVVQESFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE
                     AENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIA
                     AIMDCPVGTVRSRIFRAREAIDNKVQPLIRR"
     gene            6917..7567
                     /gene="rseA"
                     /locus_tag="OQP62_002117"
     CDS             6917..7567
                     /gene="rseA"
                     /locus_tag="OQP62_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-E factor RseA"
                     /protein_id="HCS1721666.1"
                     /translation="MQKEKLSALMDGETLDSELLKALTHDSEMQKTWESYHLIRDSMR
                     GDTPDVLHFDISARVMAAIENEPVRQVTPLIPEAQPAPQQWQKMPFWKKVRPWAAQLT
                     QMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEAAPVG
                     SQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ"
     gene            7567..8523
                     /gene="rseB"
                     /locus_tag="OQP62_002118"
     CDS             7567..8523
                     /gene="rseB"
                     /locus_tag="OQP62_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-E factor regulatory protein RseB"
                     /protein_id="HCS1721667.1"
                     /translation="MKQLWFAMSLVAASLFFSVNASADPASGALLQQMNIASQSLNYE
                     LSFVSITKQGVESLRYRHARLDSRPLAQLLQLDGPRREVVQRGNEISYFEPGLEPFTL
                     NGDYIVDSLPSLIYTDFKRLAPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWM
                     DMDTKLPMRVDLLDRDGETLEQFRVIAFTVSQDIGSTMQALAKANLPPLLSVPGGEKT
                     KFNWNPSWVPQGFSEVSSSRRPLPTMDNLPIESRLYSDGLFSFSVNVNRATQNSSDQM
                     LRTGRRTVYSSVRDNAEITIVGELPPQTAKRIADSIKFRAVQ"
     gene            8520..8999
                     /gene="rseC"
                     /locus_tag="OQP62_002119"
     CDS             8520..8999
                     /gene="rseC"
                     /locus_tag="OQP62_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SoxR-reducing system protein RseC"
                     /protein_id="HCS1721668.1"
                     /translation="MIKEWATVISWQNGQAVVSCDVKASCSSCASRAGCGSRVLNKLG
                     PQTTHTIVVPSAEPLAPGQKVELGIAEKSLLGSALLVYMSPLAGLFLCAALFQMLFGS
                     DLAALSGAVLGGVGGFLVARGYSRKLAERDAWQPVILNVALPPDLVRVETTSIETRQ"
     gene            9258..11057
                     /gene="lepA"
                     /locus_tag="OQP62_002120"
     CDS             9258..11057
                     /gene="lepA"
                     /locus_tag="OQP62_002120"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HCS1721669.1"
                     /translation="MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSM
                     DLERERGITIKAQSVTLDFKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV
                     DAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR
                     CSAKTGVGVTDVLERLVRDIPPPQGDPDGPLQALIIDSWFDNYLGVVSLVRIKNGTMR
                     KGDKIKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDILGAPVGDTLTS
                     ARNPAEKALPGFKKVKPQVYAGLFPVSSDDYESFRDALGKLSLNDASLFYEPESSSAL
                     GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTAKETIYVDSPSKLPP
                     LNNIYELREPIAECHMLLPQAYLGNVITLCIEKRGVQTNMVYHGNQVALTYEIPMAEV
                     VLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINNERVDALALITHRDNSQSRG
                     RELVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQLRKNVLAKCYGGDISRKKKLLQ
                     KQKEGKKRMKQIGNVELPQEAFLAILHVGKDNK"
     gene            11074..12048
                     /gene="lepB"
                     /locus_tag="OQP62_002121"
     CDS             11074..12048
                     /gene="lepB"
                     /locus_tag="OQP62_002121"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HCS1721670.1"
                     /translation="MANMFALILVIATLVTGILWCVDKFVFAPKRRARQAAAQTASGD
                     ALDNATLNKVAPKPGWLETGASVFPVLAIVLIVRSFLYEPFQIPSGSMMPTLLIGDFI
                     LVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKITYDP
                     VAKEVTIQPGCSSGQACENALPVTYSNVEPSDFVQTFARRNGGEATSGFFEVPLNETK
                     ENGIRLTERKETLGDVTHRILMVPIAQDQLGMYYQQPGQPLATWVVPPGQYFMMGDNR
                     DNSADSRYWGFVPEANLVGKAVAIWMSFDKQEGEWPTGVRLSRIGGIH"
     gene            12322..13002
                     /gene="rnc"
                     /locus_tag="OQP62_002122"
     CDS             12322..13002
                     /gene="rnc"
                     /locus_tag="OQP62_002122"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004248457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HCS1721671.1"
                     /translation="MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLG
                     DSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELK
                     SGGFRRESILADTVEALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRL
                     QEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQ
                     ALKKLELE"
     gene            12999..13904
                     /gene="era"
                     /locus_tag="OQP62_002123"
     CDS             12999..13904
                     /gene="era"
                     /locus_tag="OQP62_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HCS1721672.1"
                     /translation="MSTDKTYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR
                     HRIVGIHTEGPYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT
                     PDDEMVLNKLRDGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGM
                     NVDTIASIVRKHLPEAIHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEI
                     ERFVTNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLE
                     LWVKVKSGWADDERALRSLGYVDDL"
     gene            13916..14644
                     /gene="recO"
                     /locus_tag="OQP62_002124"
     CDS             13916..14644
                     /gene="recO"
                     /locus_tag="OQP62_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HCS1721673.1"
                     /translation="MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRS
                     NLKGALQPFTPLLLRYSGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEY
                     ETRFSELFFDYLNCIQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDD
                     TMTYRYREEKGFFASVVIDNNTFTGRHLKALEAREFPDVDTLRAAKRFTRMALKPYLG
                     GKPLKSRELFRQFMPKRTVKTKKD"
     gene            14656..15387
                     /gene="pdxJ"
                     /locus_tag="OQP62_002125"
     CDS             14656..15387
                     /gene="pdxJ"
                     /locus_tag="OQP62_002125"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HCS1721674.1"
                     /translation="MAELLLGVNIDHIATLRNARGTDYPDPVQAAFIAEQAGADGITV
                     HLREDRRHITDRDVRILRQTLHTRMNLEMAVTEEMLAIAVETRPHFCCLVPEKRQEVT
                     TEGGLDVAGQRDKMRDACARLAAAGIQVSLFIDADERQINAAAEVGAPFIEIHTGCYA
                     NAETDAEQAKELARIASAATLAARLGLKVNAGHGLTYHNVKAIAALPEMHELNIGHAI
                     IGRAVMTGLKEAVAEMKRLMLEARG"
     gene            15387..15767
                     /locus_tag="OQP62_002126"
     CDS             15387..15767
                     /locus_tag="OQP62_002126"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HCS1721675.1"
                     /translation="MAILGLGTDIVEIARIEAVISRSGERLARRVLSDNEWAIWETHQ
                     QPVRFLAKRFAVKEAAAKAFGTGIRNGLAFNQFEVFNDELGKPRLRLWGEALTLAEKL
                     GVAHMHVTLADERHYACATVILES"
     gene            complement(15879..16139)
                     /locus_tag="OQP62_002127"
     CDS             complement(15879..16139)
                     /locus_tag="OQP62_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HCS1721676.1"
                     /translation="MALLITKKCINCDMCEPECPNEAISMGDSIYEINSDKCTECVGH
                     YETPTCQKVCPIPNTILQDPAHVETEEQLWDKFVLMHHADKL"
     gene            complement(16192..>17060)
                     /locus_tag="OQP62_002128"
     CDS             complement(16192..>17060)
                     /locus_tag="OQP62_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1721677.1"
                     /translation="LHYGRAASRLFITQPSLSQQIKQLESSLKTILFKRKGRGIKLTK
                     AGIILQRHANKIMLDLKNAENELLPYQDQQRDTISIGVSGSYLVLPAFRNFMAHHPEI
                     SLNVKEFSTEQTIKKLTDSAVDIGIVYRTALPAQLSSTMLFEDEIIAAIPLSHPLATR
                     ERLHLKDLNDQPIIVLNDSLLLRGSITTEFNNRKVVPNVICELDNHYSCLEYAEAQIG
                     IAFITRSLTHLSTPKNVRLVSLGIPAFFIPVMLVHSNDLSLDNATICLLKQIKNFYTV
                     DNKSAPEKSWPE"
BASE COUNT         4020 a         4244 c         4713 g         4083 t
ORIGIN      
        1 aataattttg cctggggagg catcacatga ttacaggtat ccagattact aaagccgcta
       61 acgacgacct gctgaattcc ttctggctgc tggacagcga aaaaggcgaa gcgcgctgca
      121 tcgttgcaaa atccggcttt gctgaagatg aagttgtggc tgtcagcaaa ctgggcgaga
      181 ttgaataccg tgaaattccg atggaagtta aaccggaagt acgcgttgaa ggcggtcagc
      241 atctgaacgt taacgttctg cgtcgtgaaa ctctggaaga cgcggttaag catccggaaa
      301 aatacccgca gctgactatt cgtgtttctg gttatgcggt gcgttttaac tccctgacgc
      361 cggaacagca gcgcgacgtt atcgctcgta cctttaccga aagcctgtaa ggcttatccg
      421 gtaataacaa gcggaagagg ccgggccttt tccgcttttg ttttatttgt gtcagtaaaa
      481 aatccgcacc gcgcagtaca ccagcagtaa cgccagaatg atatttaact ggcgaccata
      541 atggcgaaac gcccgctgaa acagatgtcc cgccagcgcc cagcacacat taccgaacgt
      601 gccgatcaat gccagcaata tactgacgcc gatgacccag ttcagcgcct gcgtttgcgg
      661 taaaacaaat gtagacagag cggtaatgcc gtacagaata attttgacgt tcacaaactg
      721 caggccaaag cttacccaaa agccaaccgg ttttggtctg accttctcat ccgccgctgg
      781 actggtggca attttccacg ccagccacag gatatacgca gcccctaccc aactgagcaa
      841 atgaatgatt gccggatcga taaccgcaag ggaaaacgcg atcccggcgc acagcagcat
      901 gacgaccaaa aatcccagac tcatacctgc cagtacacga atactctgcc gaaaaccatg
      961 tgcagttgct gcgctaagcg cgagaatatt gtttgggccg ggggtaaggg cggtgattaa
     1021 tgtataagtc cagaaagcgc ttaaaagcat cggtgtcact tgtcatctcc tctgttttag
     1081 cagacagtac ccgatatgaa atatttaaaa aaatgaatgt tttttaattc tgaattcgag
     1141 attttcgata ggttggtggt tatggatctg cgtcggttta ttacgctgaa aacggtagtg
     1201 gaagagggct cgtttctgcg ggcttcgcaa aagctgtgct gtactcagtc gacggtaact
     1261 tttcatattc aacagcttga acgtgagttt tccctgcaac tgttcgagaa aatagggcgc
     1321 cgaatgtgcc tgaccaatga ggggaaaaag ctgataccgc atatccatga actgacgcgt
     1381 gtgatggagt cgattcgtga agccgcaaga caggatgcgg aacccggcgg agagctgcgc
     1441 gtggcgacag gtgaaacctt actggcatac aaaatgccgc aggttttaca acgttttaag
     1501 ctgcgagcgc cgaatgtcag attgtcgcta cagtcgctga attgctatgt gatacgtgat
     1561 gcgttgctga atgacgaggt cgatctgggc gttttttatc gcgtaggtaa tgatgacgcg
     1621 ctcacgatgc agcaactggg ggagcagccg ctggcgctgg tggcctctcc actgctacag
     1681 gatgctgatt ttacgcagcc agatcagcat atccctgcag cttcatcatc aatgaaccgc
     1741 aatgtgtctt ccgccagcta tttgaaagta cgctacggca gaggcggatt acgctggaaa
     1801 acaccattga actgtggagt attgaaagca ttaaacagtg tgtggctgct aacctgggca
     1861 tcagcttttt accgcgattt gccgttgaac gagaacttag caccggtcag ttgaaagagc
     1921 tgccgtttgg cgcgccgtcg ctatcgatca tggcgctgtg cgcccatcat gccgggaaag
     1981 cggtcagccc ggcaatgcag atatttatgc agtgtatgga ggcgtgtttt accgtggaag
     2041 ataaaaaatg ccgggttaac gaacccggca ttatcatcac tcttcgctgg attgctcctg
     2101 cattttcgta ccgcttggct tgcggcgctt accgatattt tttgtatcgc ggtaacgttt
     2161 cttcacgcgc ggcttctctt tttctttctc ttttttcttc tcggcgcgtt tcgccagcac
     2221 ttttttcgac ggtttgccgg tcagcttttc gctgggcgca cgcgtggtcg ggcgaagctc
     2281 atcaatgacg cgcgctttta gcggctcttc gatgtagcga ccgattttca gcagcaacag
     2341 atggtcgtgg gcttcaacca gcgagattgc agtgcctttg cgacccgcac ggcctgtacg
     2401 accaatgcga tgcagatagg tatcgccact gcgcggcatg tcgaagttaa tgacgtggct
     2461 gacgtcagga atatcaatcc cgcgtgccgc gacgtcggtc gcgaccagca cgttaacgcg
     2521 accgtcggtg agacgcttaa taccctcgtt acgtttgatc tgcgccatct cgccttcaag
     2581 atagcaattg ttgatccctg ccagacgcag cgtttcagcc agttcatgga cgcgttcacg
     2641 tttacgtaca aacacgatag aacgggttgc atcgtcttgt tttagcaggt gcttcaacag
     2701 cgcaacttta tgttcgaaat tgtcggcacg gtagtaccac tggtgaattt tcttgcgctc
     2761 gcgggttgac ggattggcgg aaacctcaac cgggtcttcc agcaggcgct cggcaaaatc
     2821 tttaatcgca tcgccttcca gcgtggcgga gaacagcatc gtctgtttac gccagcgggt
     2881 ctcaccagcg atatgttcaa tgtcctgagc gaagcccatg tcgagcatcc ggtcagcttc
     2941 gtcaaggatc agtgtttcaa ccgcccggca gtcaaaattc tcttctttta tatattgcag
     3001 cagacggccc gtcgtggcga ccacgatatc ctggttttcg ctaaacactt cagcatggtt
     3061 catataggcc acgccgccgg taatcgtggc gatatccaga tgagtatgct tagccagttc
     3121 acgagcgtga tcggcaacct gcattgccag ttcgcgggtt ggcgtcagga tcagaatgcg
     3181 cggcggcccc gattttttac gcggaaagtc gagcaggtgc tgcaacgccg gcagcagata
     3241 tgccgccgtt tttccggtgc ctgtcggcgc agaaccgagt acatcacggc catcgagcgc
     3301 aggcggaatg gcggcagcct gaatggcggt cgggcgagtg aaacctttat cctggagggc
     3361 atccagcagg ctttcgtcga gttcaagttc ggaaaaagtc gttacagtca tgttctacct
     3421 ctgtgtgggg cgctgattat agacgttacg gccgcaatct tcatctgttt gtatggatat
     3481 cccttctcag gtattgtttt cactcggcgc tgtcgccgtt ttttgcaagg ttgtttttac
     3541 atgtctcagt ctggctccgt tcttcgtcgt aacggattta cgtttaaaca gttttttgtc
     3601 gcacacgatc ggtgtgcgat gaaagtggga actgacggta ttttactcgg ggcgtgggcg
     3661 ccggtcgcgg atgtaaagcg aattctggat atcggtactg gaagcggtct gctggcgtta
     3721 atgctggcgc agcggacgga tgacagtgtg cctgttgacg ccgtggaact ggatgccggg
     3781 gctgccatgc aagcgcagga aaacgtggct cactctccat ggccgcatcg aataacggtg
     3841 catactgacg atattcagcg ttgggcgcct cgccagacgg tacgctttga tcttattatc
     3901 agcaacccgc cttattacga acccggtgtg gaatgctcca cgccgcagcg ggagcaggcg
     3961 cgttacaccg ctacgctgga tcaccagacg ttattggcta ttgcggcgga ttgtattacc
     4021 gaagatggct ttttttgcgt agtcttgccg gaacaaatag gtaacgcttt tacgcagcaa
     4081 gcgctcaaca tgggatggca tttgcggtta cgtactgacg ttgcggaaaa cgaagcgcgc
     4141 ttgccgcacc gggttttgct cgcattctcc ccgcaagccg gggagtgctt tagcgacaga
     4201 ttagtaattc gcgggtcaga ccagaattat tctgaaagtt atacggcgct gacccaggca
     4261 ttttatctgt ttatgtgagg cgttaacggc gaaaggatcg atgggcctga ttcagccagt
     4321 tgttgcggat aatccagcgt aaagtgcagc ccccggctct ctttacgcat catcgcgcaa
     4381 cgcacaatca gttcggccac ttgcaccaga ttgcgcagct ccagtaaatt attcgagacg
     4441 cgaaagttgg cgtaatattc gtcaatctct tgttgcaaca tagtaatacg ccgtagggcg
     4501 cgctccagcc gtttcgtcgt gcgcacaatc cccacatagt cccacatcag cagacgcagt
     4561 tcgtgccagt tatgctgaat caccacccgc tcatcggcgt tctccacgcg gctttcatcc
     4621 caggcgggaa ggacgtcaac gctgtggaca gaaggcattc gcctgtcgat atccattgcc
     4681 gcggaccagc cgtacactaa gcattccagt aacgagttgg acgccatacg gttagcgccg
     4741 tgcagaccgg tgtaactgac ttcgccaatg gcatataagc cgtctacatc ggtacgacca
     4801 taatcatcga cgaccacgcc gccgcaggta tagtgcgcgg caggaacaat gggaatcggt
     4861 tctttggtta aatccatccc caaatcgagc agtttcgcat agatcatcgg gaagtgctgg
     4921 cggacaaaat cgtcaggctt gtggctgata tcgagaaaca tacagtctgc gccgagtcgt
     4981 ttcatctcat gatcaatagc gcgggcgaca atatcgcgcg gcgccagttc gccgcgttcg
     5041 tcaacgtccg gcataaaccg tgaaccgtcc ggacgtttaa ggtatgcgcc ttcgccgcgc
     5101 agcgcttcgg taaggagaaa attacgcgcc tgcgggtgat aaagggcagt gggatgaaac
     5161 tggttaaatt ccagattagc gacccgacag cccgcgcgcc aggccatcgc gataccgtca
     5221 ccggaggaaa tatccgggtt agtggtatat tgatacacct ttgaggcgcc gccggtcgcc
     5281 agcaccaccg acttcgcatg acaggtttca acccactctt tattgcgatt ccagatccag
     5341 gcgccgacga cccggcgagg ccccggcaga cctattttat cggagataat taaatcaacg
     5401 gcgttgctgc gttccagcac ctgaatatta ggatgatttt gtgcccgact gaccaacgtg
     5461 gtttcgactt cctttccggt agcgtcggcg gcatgaagga tacggcgatg gctatggccg
     5521 ccttcacgcg tgagatgata gctctccttg ccgtttggct ggacatgcgt atcaaacagg
     5581 acgccctgat cgataagcca ctgcacgcag gtacgagcgt tgctggcgac aaactccacc
     5641 gcgtggcgat cgcaaattcc ggcgccggca atcagcgtat cttcgacatg cgatgcaatg
     5701 ctgtcggttt catcaaacac ggcggcaata ccgccctgtg cataaaacgt ggagccctcg
     5761 ctcaccggcc ctttactcag gacgataacc ttatgctttt cagccagacg cagcgccagc
     5821 gagagtccgg ccgcgccgct gccgataatt aacacatcac aggacagttc aggagttgtc
     5881 atcatggttc ttgtttaatt tactaaacat ggttgcggca gattagcact atatggcgct
     5941 aaaaagcacg ttatgatttc aaaagtgttg tgcttattaa acataaaata aaaatacggc
     6001 gagagataaa cggcaaaaaa tattttatag ggcagggtgt tagcgtcgga ttttgtagtg
     6061 aaataaagat gctgttaggt tactctgcaa acgacgaaat gggcatttct gtacagatag
     6121 tgcgttgttc agcatctgta gacttataat ggaagataag acctgtctac aacatgacaa
     6181 acaaaaacaa atgcgtaacg gaactttacg aaacatagac actctaacct gttgcttgct
     6241 catagtgcgg cttatggagt ggcgtttcga aagcgcgtgg aaatttggtt tggggagaca
     6301 ttacctcgga tgagcgagca gttaacggac caggtcctgg ttgaacgggt ccagaaggga
     6361 gatcagaaag cctttaactt actggtagtg cgctaccagc ataaagtggc gagtctggtt
     6421 tcccgctatg tgccatcggg cgacgttccc gatgtcgtac aggaatcatt tattaaggcc
     6481 tatcgcgcgc tggattcttt ccggggggat agcgcttttt atacctggtt gtatcgtatt
     6541 gcggtcaata ccgcgaagaa ctacctggtt gcgcaggggc gtcgtccgcc ttccagtgat
     6601 gtagacgcga ttgaagcaga aaactttgaa agcggcggcg cgctgaaaga aatttcgaac
     6661 cctgagaact taatgttgtc agaagaactg agacagatag ttttccgaac tattgagtcc
     6721 ctcccggaag atttacgtat ggcaatcacc ttacgggagc tggatggcct gagctatgaa
     6781 gagatagcgg ctatcatgga ttgcccggtg gggacggtgc gttcacgtat cttccgggcg
     6841 cgggaagcta ttgataataa agttcaaccg cttatcaggc gttgacgata gcgggatact
     6901 ggaaaaggta ttaggcatgc agaaagaaaa actttccgct ttgatggatg gcgaaacgtt
     6961 ggatagtgag ctgctcaaag cgcttacgca cgactcggaa atgcagaaaa cctgggagag
     7021 ttatcacctg atccgcgatt caatgcgggg ggatacgcct gacgttctcc atttcgatat
     7081 atccgcccgc gtgatggccg ctattgaaaa cgagccagta cgtcaggtga cgccattaat
     7141 ccctgaggcc caacccgctc cgcagcaatg gcagaaaatg ccgttctgga aaaaagtgcg
     7201 tccgtgggcg gcgcagctta cccaaatggg cgtggcggcg tgcgtttcac ttgcagttat
     7261 cgtcggtgtc cagcactata atgggcaatc tgaaacatcc caacaacctg aaacgccggt
     7321 tttcaatacc ctgcctatga tggggaaagc cagcccggta agtctgggag tgccttctga
     7381 agcagcgcct gtcggcagtc agcaacagca ggtacaggag cagcgtcgtc gcattaatgc
     7441 catgttgcag gactatgaac tgcagcgccg actgcactcc gaacagcttc agtttgagca
     7501 ggcgcaaacc cagcaagccg cggtacaggt gccaggaatc caaactttag gaacgcaatc
     7561 gcagtaatga agcaactttg gtttgccatg tcccttgtgg cggctagcct gttcttctca
     7621 gtaaacgcct cggccgaccc tgcgtccggg gcgttattgc agcagatgaa catcgccagt
     7681 cagtcactga attacgagct gtcattcgtc agcatcacga aacaaggcgt tgaatctctg
     7741 cgttatcgac acgcacgcct ggatagtcgc ccgcttgcgc aattgctaca gttggacggt
     7801 ccccgccggg aggtcgtaca gcgtggtaat gaaatcagtt attttgaacc gggccttgag
     7861 ccgttcaccc tgaacggtga ttatattgtc gattctctgc cttccctgat ttacaccgat
     7921 ttcaagcgtc tggcgcctta ctacgacttt atttccgtcg gacgcacccg tatcgcagac
     7981 agattatgcg aagttatccg cgttgtggcg cgcgatggta cgcgttacag ctatatcgtc
     8041 tggatggaca tggacaccaa actaccgatg cgcgttgatc tgctggatcg cgacggcgag
     8101 acgctggagc agttccgcgt tattgcgttc acggtgagtc aggatatcgg cagcaccatg
     8161 caggcgctgg cgaaggcgaa tctgccgccg ctgctttctg ttcccggtgg cgaaaaaacg
     8221 aaatttaact ggaatccatc ctgggtgccg caaggcttta gcgaagtttc cagcagccgt
     8281 cgtccgttgc cgacgatgga taacctgcct atcgaatcgc ggctttattc tgacggtctg
     8341 tttagctttt ccgtcaatgt gaaccgggcg acgcaaaaca gcagcgatca gatgctgcgc
     8401 accgggcgcc gaacggttta tagcagcgtt cgcgacaacg cggaaatcac cattgtcgga
     8461 gagcttccgc cgcaaacggc gaagcgcatt gccgacagta tcaaattcag ggcagtacaa
     8521 tgattaaaga gtgggcaacc gttatctcct ggcagaatgg tcaggcggtg gtgagctgcg
     8581 acgttaaagc gtcatgcagc agctgcgcct cccgtgcggg atgcggcagt cgcgtgctga
     8641 ataaattagg gccgcaaacc acgcatacca ttgttgtgcc aagcgcggag ccgctggctc
     8701 cggggcagaa agtcgagttg ggcatcgccg aaaaaagcct tttaggttcg gcgttgctgg
     8761 tctatatgtc gcctttagcg gggctatttc tttgtgcggc gctttttcag atgctgtttg
     8821 gatctgacct tgccgcatta agcggggccg tgctgggcgg agtgggcggt tttctggttg
     8881 cccgcggcta ttcccgaaaa ctggcggagc gcgacgcctg gcagcccgtg attttaaacg
     8941 ttgccctccc gcctgacctt gtccgcgtcg aaactacctc aatcgaaacg cgccagtaaa
     9001 cgttttgccc aatggtacat ggtacacctg ccgcgttggg ttgttgtccc gataagcatg
     9061 cgcttttcct gcgttgcggt gttttacagg aaaaaagcga ggcgttttcc agttcccgct
     9121 ctccttacac tatgaacatt tcctcgcctt agcgttgtag tgtagaatgc ggcgtttcag
     9181 ttaaaacaga cgttaagctc agaacagcga cctctaaagt ctggtcaacc aggcgtaagg
     9241 cataataatt tatctctatg aagaacatac gtaacttttc gatcattgct cacattgacc
     9301 acggtaaatc gacgctgtct gaccgtatta tccaaatctg cggtggcctg tctgaccgtg
     9361 aaatggaagc tcaggtactt gattcgatgg atcttgagcg tgagcgcggt attactatta
     9421 aagcccagag tgtgacgctg gattttaaag cgtctgatgg tgaaacttat caactgaact
     9481 ttatcgacac gccgggacac gttgactttt cctatgaagt ttcccgttcg ttagccgcct
     9541 gcgagggcgc gctgctggtg gtggatgccg gccagggcgt agaagcgcaa acgttggcga
     9601 actgctacac cgcgatggaa atggatcttg aagtggtgcc ggtgcttaac aagattgacc
     9661 tgccggccgc cgatccggag cgtgtggcgg aagaaatcga agacattgtc ggcatcgatg
     9721 cgacggacgc ggtacgctgc tccgccaaaa cgggtgtcgg cgtgacggac gttctggaac
     9781 gcctggtgcg cgatatcccg ccgccgcaag gcgatccgga cggcccgctg caggcgctga
     9841 ttattgactc ctggttcgat aactacctgg gcgtggtatc cctggtgcgt attaaaaacg
     9901 gcaccatgcg taaaggcgac aaaattaaag tgatgagcac cgggcagacc tacaacgctg
     9961 accgcctggg gatcttcacg ccgaaacagg ttgatcgtac cgagctgaag tgcggcgaag
    10021 taggctggct ggtctgcgcc attaaagata tcctcggcgc gccggttggc gataccttaa
    10081 cctcagcgcg taacccagct gaaaaagcgt tgccgggctt taagaaggtg aaaccgcagg
    10141 tctatgcagg tctgttcccg gtcagctccg acgattatga aagtttccgc gacgcgctcg
    10201 gcaagctgag cctgaacgat gcctcactgt tttatgaacc ggaaagctcc tcggcgctgg
    10261 gctttggttt ccgctgcggc ttcctcggcc tgttgcacat ggagatcatt caggagcgtc
    10321 tggaacgcga atacgatctg gatctgatca ccactgcgcc gaccgtggtt tatgaagtag
    10381 aaacaacggc gaaagagact atctatgttg atagcccctc caagctgccg ccgttgaata
    10441 acatttatga actgcgcgag cctatcgccg aatgtcatat gctgttacca caagcctatt
    10501 taggtaacgt tattacgctg tgtattgaga aacgcggcgt acaaactaac atggtgtatc
    10561 acggtaacca ggttgcgttg acctatgaaa tcccgatggc ggaagtggtg ctcgacttct
    10621 ttgaccgtct gaaatcaacg tcgcgcggct atgcgtctct ggattataac ttcaagcgct
    10681 tccaggcttc cgatatggtg cgtgttgatg tgttaatcaa caacgagcgt gtcgatgcgc
    10741 tggcgctgat cacgcaccgt gataactcgc aaagccgtgg tcgcgagctg gtggagaaaa
    10801 tgaaagattt gattccacgc cagcagtttg atatcgcgat tcaggcggcg attggtacgc
    10861 atattattgc ccgttcgacg gtaaaacagt tacgtaaaaa cgtgctggcg aagtgctacg
    10921 gcggcgatat cagtcgtaag aaaaaactgc tgcagaaaca gaaagaaggt aagaaacgca
    10981 tgaagcagat cggtaacgtc gagctgcctc aggaggcgtt cctcgccatt ctgcatgtcg
    11041 gtaaagacaa taaataatcc ctaaggagtt ggcatggcga acatgtttgc cctgattctg
    11101 gtgatagcca cactggtgac gggcatttta tggtgcgttg ataagtttgt tttcgcgcca
    11161 aaacgtcggg cgcgccaggc tgccgcgcaa acggcgtcgg gagatgcgct ggataacgct
    11221 acgctcaata aagtggcgcc taagccgggc tggctggaga ccggggcgtc ggttttcccg
    11281 gttctggcga tcgttctgat cgttcgttca tttctttatg aaccctttca gatcccgtca
    11341 ggctcaatga tgccgacact gcttatcggc gattttattc tggtggaaaa atttgcctac
    11401 ggcattaaag atccgatcta ccagaaaacc ctgattgaaa ccggtcatcc aaagcgcggg
    11461 gatattgtgg tatttaaata tccggaagat cctaagttag attacatcaa acgcgccgtc
    11521 ggtttgccgg gcgataaaat cacttatgat ccggttgcga aagaggtgac gattcagcct
    11581 ggctgtagct ccggtcaggc gtgcgaaaat gcgctgccgg ttacctactc taacgttgag
    11641 ccgagcgatt ttgtacagac ctttgcccgc cgtaacggcg gagaagcgac cagcggtttc
    11701 tttgaggttc cgctaaacga gacaaaagaa aacggcattc gcctgaccga acgtaaagag
    11761 acgttaggcg atgtgaccca ccgcatcctg atggtgccga tagcccagga tcagttgggc
    11821 atgtattacc aacagccagg acaaccgctg gcgacctggg ttgtaccgcc ggggcaatat
    11881 ttcatgatgg gcgacaaccg cgataacagc gcggatagtc gttactgggg atttgttccg
    11941 gaagcgaatc tggtcggtaa agcggtcgct atctggatga gctttgacaa gcaggaaggg
    12001 gagtggccga caggcgtacg cctgagtcgt atcggcggta ttcactaact gtggcgaaat
    12061 gatcgttcac gctgtcgtct ttttagcggc agcgtgaatt atttcctgga taaattccct
    12121 cagactaacg acatcccctg tcgttgtgta tagaatattc ccccgaagtt ttaggttggc
    12181 gccgtttggt cgccacggca cacgaaacag cgttggttat agacaacctt ctttccgctg
    12241 cagcgatgcg gcaggacaga tgacgtgtat caggtctgtt tcgtgtgctg gattgttgac
    12301 gcattcattt attggtatcg catgaacccc atcgtaatta atcggcttca acggaagctg
    12361 ggctacactt ttaatcatca ggagctgttg cagcaggcat taactcaccg cagcgccagc
    12421 agtaaacata acgaacgcct ggagttttta ggcgattcaa tcctgagctt cgttatcgct
    12481 aacgcgcttt atcaccgttt tccacgggtg gatgagggag atatgagccg tatgcgcgcc
    12541 acgttggtac gtggtaatac gctggcggaa ttagcccgtg aatttgattt aggcgagtgc
    12601 ctgcgtttag ggccgggcga attaaaaagc ggcggatttc gtcgggagtc cattctggcg
    12661 gacaccgtgg aagcgttaat cggcggagta tttctcgata gcaatatcca gaccgtcgag
    12721 cagttaatcc ttaactggta taaaacccgt ctggatgaga taagtccggg cgataaacaa
    12781 aaagatccta aaacgcgctt gcaggagtat ttgcagggtc gccatctgcc gctgccatct
    12841 tacctggttg tgcaggtacg cggcgaggcg cacgatcagg aatttactat ccactgccag
    12901 gtcagcggcc tgagcgaacc ggtggttggc acgggttcca gccgtcgtaa ggcggagcag
    12961 gctgccgccg aacaggcgct gaaaaaactg gagttggaat gagcaccgac aaaacttact
    13021 gcggatttat tgccatcgtc ggacgtccga acgttggcaa atccaccttg ctgaacaaac
    13081 tgctcgggca gaagatttcg atcacttccc gtaaagcgca gaccacgcgc caccgcattg
    13141 tcggtattca taccgaaggc ccgtatcagg caatctatgt cgataccccg ggactgcata
    13201 tggaagaaaa gcgcgccatt aaccgtttga tgaataaggc ggcgagcagt tcgattggcg
    13261 acgttgagct ggtgattttc gttgtagaag gcacccgttg gacgccggac gacgaaatgg
    13321 tcctgaacaa actgcgcgat ggcaaagcgc cggttattct cgccgttaac aaggtggata
    13381 acgtgcagga aaaagccgat ttgctgccgc acctccagtt cctggcaagc cagatgaact
    13441 ttcttgatat cgtccccatc tctgctgaaa cgggtatgaa cgtcgatacc attgccagta
    13501 tcgtgcgtaa acatttaccg gaagcgattc accacttccc ggaagattat atcaccgatc
    13561 gctctcagcg ctttatggcg tctgaaatca ttcgtgaaaa gctgatgcgt tttctcggcg
    13621 ccgagctgcc gtattccgtt accgttgaga ttgaacgttt tgttaccaac gaacgcggcg
    13681 gctatgatat caacgggctg atcctcgtcg agcgcgaagg gcagaagaag atggtgattg
    13741 gcaacaaagg cgccaaaatc aaaaccattg gtattgaagc gcgtaaagac atgcaggaga
    13801 tgtttgaagc gccggtacac ctggaactgt gggtgaaagt gaaatccggc tgggccgatg
    13861 acgaacgcgc tctgcgcagt ctcggttacg tagacgatct gtgagttaac acagcgtgga
    13921 agggtggcag cgcgcatttg tcctgcacag tcgcccctgg agcgaaacca gcctgatgct
    13981 ggacgtcttc acggaagaat cggggcgcgt gcgccttgtc gccaaaggcg cgcgatctaa
    14041 acgttccaat ctgaaaggcg cgttgcagcc ttttacgccg ttattgctac gctacagcgg
    14101 acgcggcgag gtgaaaaccc tgcgcagcgc cgaggcagtt tctctggcgc tgccgttaag
    14161 cggtattacg ctctatagcg gcctgtatat caacgaactc ctctctcgcg tactggaata
    14221 tgaaacgcgc ttctccgaac tcttttttga ttatctgaac tgtattcagg cgctggcggg
    14281 aaccaccggc tcgcctgaac cggcgttgcg acgtttcgaa ctggcgttgc tgggacatct
    14341 ggggtatggc gtcaatttca cccactgtgc aggcagcggc gaacgggtgg atgacaccat
    14401 gacctaccgt taccgcgaag aaaaaggctt tttcgccagc gtcgtcatcg ataacaacac
    14461 ctttaccgga cggcacctga aagcgctgga ggcgcgggaa tttccggatg tagataccct
    14521 gcgtgccgct aaacgcttta cccgtatggc attaaagccg tatcttgggg gaaaaccgtt
    14581 aaaaagccgg gagctgttcc ggcaatttat gcccaaacgc acagtaaaaa cgaagaaaga
    14641 ttaacgagga ttgtcatggc tgaattactg ttaggcgtca atattgacca cattgccacg
    14701 ttacgtaatg cgcgcggcac cgactatccg gatccggtac aggcggcgtt tattgctgaa
    14761 caggcaggcg cggacggcat taccgtacac ctgcgcgaag atcgtcgcca cattaccgat
    14821 cgcgatgtgc gcattctgcg tcagacgctg catacgcgta tgaatctgga gatggcggtg
    14881 accgaagaga tgctggcgat cgccgtagaa accaggccgc atttctgttg tctggtgccg
    14941 gaaaaacgcc aggaagtcac caccgaaggc ggcctggatg tggccggaca gcgcgataaa
    15001 atgcgtgatg cctgtgcgcg cctagcggcg gctggcatcc aggtttcgct ctttatcgat
    15061 gccgatgaaa ggcaaatcaa cgcggcggcg gaagtcggcg cgccgtttat cgaaatccat
    15121 accggctgct atgccaacgc agaaaccgat gcggaacagg caaaagagct ggcgcgtatt
    15181 gccagcgccg cgaccctggc ggcccgtctg gggctaaaag taaatgcggg tcatggcctg
    15241 acctaccata acgtcaaagc tattgccgca ctgccggaaa tgcacgagct caatatcggt
    15301 catgccatta ttggtcgggc ggtgatgacg gggctgaaag aggcggtggc tgaaatgaaa
    15361 cgtttgatgc tggaagcgcg cggctaatgg cgattctcgg cctgggaacg gatattgtag
    15421 agattgcccg cattgaggca gtgatctccc gttccggcga acgtctggca aggcgtgtgc
    15481 tcagtgacaa cgagtgggct atctgggaga cgcatcagca gccggtgcgt tttctcgcca
    15541 agcgttttgc ggtcaaagag gcggcagcga aagcttttgg caccggcatc cgcaacggtc
    15601 tggcgtttaa tcagttcgaa gtgtttaacg atgagctggg aaaaccacgt ttgcggctgt
    15661 ggggcgaggc gttaacgctg gcggaaaaac tcggtgtggc gcacatgcat gtcacgttgg
    15721 ccgatgaacg ccattacgcc tgcgctacgg tcattctgga aagttagatt tgccggatgg
    15781 cggcgtaaac acgttatctg acctacaggc cgatatattg ccggcctgat aagcatagcg
    15841 ccatcaggca ttgttgcgtt ggaagtgcgt taacccgctt acaatttatc tgcgtgatgc
    15901 atcagaacaa acttatccca caactgttct tcggtttcga catgggcggg atcctgcaaa
    15961 atcgtattgg ggatcgggca gactttctga caggtcggcg tttcgtaatg gcctacacac
    16021 tcggtgcatt tgtcgctgtt aatctcataa atgctgtcgc ccattgaaat cgcctcattc
    16081 gggcactccg gctcgcacat atcgcaattg atacattttt tggtgattaa cagcgccatc
    16141 aggaaattct cagaaacaac acaaatcggg cgggcattat acgcctattt tctactcggg
    16201 ccagctcttt tctggcgctg atttgttatc tacagtgtaa aaatttttga tctgcttgag
    16261 caggcagatg gttgcgttat ccagtgaaag gtcattactg tgcaccagca tgacaggaat
    16321 aaagaatgcg gggatgccca gtgaaaccag gcgaacattt ttgggtgtcg ataaatgggt
    16381 tagcgagcgg gtaataaatg cgatgccaat ctgcgcttcg gcatactcaa ggcatgagta
    16441 gtggttatcc agttcgcaga tgacgttagg aacgactttg cggttattaa attctgtggt
    16501 gatgctccct cttaatagca gagagtcatt aagcacgata atgggctggt cgtttaaatc
    16561 ttttagatgc agacgttcgc gtgtcgccag aggatgagaa agtgggattg cagcgataat
    16621 ttcatcttca aacagcatgg tcgagcttag ctgggcaggg agcgctgttc gataaacaat
    16681 gccaatatca acggcgctat ccgtcagctt tttaatggtt tgctcagttg agaactcttt
    16741 aacatttaaa gatatttccg gatggtgcgc cataaagttg cgaaaagcgg gcaggaccag
    16801 gtagctgcct gacaccccga ttgaaatagt atcgcgctgt tgatcctgat agggaagaag
    16861 ttcattttcg gcatttttta aatccagcat tattttgtta gcgtgtcgtt gcaaaataat
    16921 gcctgctttt gttaatttaa ttcctctgcc ttttcgctta aataatattg ttttaagtga
    16981 tgactcaagt tgtttgattt gctgacttaa tgatggctga gtgataaata ggcgactggc
    17041 tgcccgacca taatgtaatt
//
LOCUS       DAJVSD010000080        16692 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.080, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000080 DAJVSD010000000
VERSION     DAJVSD010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 16692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16692
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.080"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            5..1135
                     /gene="ugd"
                     /locus_tag="OQP62_002129"
     CDS             5..1135
                     /gene="ugd"
                     /locus_tag="OQP62_002129"
                     /EC_number="1.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000064788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
                     /protein_id="HCS1721678.1"
                     /translation="MSNGLLIAQHHDVVALDIVPARVELLNDRISPIVDKEIQQFLKE
                     DNIRFRATLDKFDAYQNADYVIIATPTDYDPKTNYFNTFSVESVIQDVISINPAAVMI
                     IKSTVPVGFTAAMRQKFATENIIFSPEFLREGKALYDNLYPSRIVIGEQSERAREFAA
                     LLQEGAIKQEIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAETLGLNTRQIIE
                     GVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQSVPNNIISAIVEANRTRKDFIA
                     DSILARKPKVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMQEETFFN
                     SRLERDLHCFKQQADVIISNRMAAELLDVAEKVYTRDLFGSD"
     gene            1278..2261
                     /gene="wzzB"
                     /locus_tag="OQP62_002130"
     CDS             1278..2261
                     /gene="wzzB"
                     /locus_tag="OQP62_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen chain length determinant protein
                     WzzB"
                     /protein_id="HCS1721679.1"
                     /translation="MTVDSNASSGRGNDPEQIDLIELLLQLWRGKMTIIVAVIIAILL
                     AVGYLMIAKEKWTSTAIITQPDAAQVATYTNALNVLYGGNAPKISEVQANFISRFSSA
                     FSALSEALDNQKEREKLTIEQSVKGQTLPLSVSYVSTTAEGAQRRLAEYIQQVDEEVA
                     KELEVDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALRYADEAKITQPQIQ
                     QTQDVTQDTMFLLGSDALKSMIQNEATRPLVFSPAYYQTKQTLLDIKNLKVTADTVHV
                     YRYVMKPTLPVRRDSPKTAITLVLAVLLGGMIGAGIVLGRNALRSYKPKAL"
     gene            complement(2342..2953)
                     /locus_tag="OQP62_002131"
     CDS             complement(2342..2953)
                     /locus_tag="OQP62_002131"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HCS1721680.1"
                     /translation="MLTEQQRRELDWEKTDGLMPAIVQHAVSGEVLTLGYMNPQALDK
                     TIESGHVTFFSRTKQRLWTKGETSGHVLNVVSIAPDCDNDTLLVLANPVGPTCHKGTS
                     SCFGDASHQWLFLYQLEQLLAERKTADPASSYTAKLYASGTKRIAQKVGEEGVETALA
                     ATVNDRFELTNEASDLMYHLLVLLQDQDLNLTTVIDDLRKRHQ"
     gene            complement(2947..3723)
                     /gene="hisF"
                     /locus_tag="OQP62_002132"
     CDS             complement(2947..3723)
                     /gene="hisF"
                     /locus_tag="OQP62_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HCS1721681.1"
                     /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYADEGA
                     DELVFYDITASSDGRVVDKSWVARVAEVIDIPFCVAGGIRSIDDAAKILSFGADKISI
                     NSPALADPTLITRLADRFGVQCIVVGIDTWFDDATGKYHVNQYTGDENRTRVTQWETL
                     DWVQEVQQRGAGEIVLNMMNQDGVRNGYDLTQLKKVRDVCRVPLIASGGAGTMEHFLE
                     AFRDADVDGALAASVFHKQIINIGELKAYLAGQGVEIRIC"
     gene            complement(3705..4442)
                     /gene="hisA"
                     /locus_tag="OQP62_002133"
     CDS             complement(3705..4442)
                     /gene="hisA"
                     /locus_tag="OQP62_002133"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HCS1721682.1"
                     /translation="MIIPALDLIDGTVVRLHQGDYARQRDYGNDPLPRLQDYAAQGAG
                     VLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRTEEDVAALLKAGVARVVIG
                     STAVKSPDVVKGWFERFGAQALVLALDVRIDEHGNKQVAVSGWQENSGVSLEQLVETY
                     LPVGLKHVLCTDISRDGTLAGSNVSLYEEICARYPQIAFQSSGGIGDIDDIAALRGTG
                     VRGVIVGRALLEGKFTVKEAIQCWQNV"
     gene            complement(4442..5032)
                     /gene="hisH"
                     /locus_tag="OQP62_002134"
     CDS             complement(4442..5032)
                     /gene="hisH"
                     /locus_tag="OQP62_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HCS1721683.1"
                     /translation="MNVVILDTGCANLSSVKSAVARHGYTPVVSREAEIVLRADKLFL
                     PGVGTAQAAMDQLRERELIDLIKACTQPVLGICLGMQLLGRRSEETRGVDLLNIIEQD
                     VPKMTDFGLPLPHMGWNRVYPQAGNRLFQGIEDGAYFYFVHSYAMPVNPWTIAQCNYG
                     EPFTAAVQKDNFFGVQFHPERSGAAGAQLLKNFLEM"
     gene            complement(5032..6099)
                     /gene="hisB"
                     /locus_tag="OQP62_002135"
     CDS             complement(5032..6099)
                     /gene="hisB"
                     /locus_tag="OQP62_002135"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HCS1721684.1"
                     /translation="MSQKYLFIDRDGTLISEPPSDFQVDHFDKLAFEPEVIPVLLKLQ
                     KAGFKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVCFDEVLICPHLPADDCD
                     CRKPKVKLVERYLAEQAMDSANSYVIGDRATDIQLADNMGITGLRYHRETLNWTMIGE
                     QLTKRDRYAHVVRNTKETQIDVSVWLDREGNSKINTGVGFFDHMLDQIATHGGFRMEI
                     TVKGDLYIDDHHTVEDTGLALGEALKLALGDKRGICRFGFVLPMDECLARCALDISGR
                     PHLEYKAEFTYQRVGDLSTEMIEHFFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFG
                     RTLRQAIRVEGDTLPSSKGVL"
     gene            complement(6096..7175)
                     /gene="hisC"
                     /locus_tag="OQP62_002136"
     CDS             complement(6096..7175)
                     /gene="hisC"
                     /locus_tag="OQP62_002136"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HCS1721685.1"
                     /translation="MSTENTLSVADLARENVRNLVPYQSARRLGGNGDVWLNANEFPT
                     AVEFQLTQQTLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELVIRAFCEPG
                     KDAILYCPPTYGMYSVSAETIGVERRTVPALENWQLDLQGISDNLDGAKVVFVCSPNN
                     PTGQLINPQDLRTLLELTRGKAIVVADEAYIEFCPQATLAGWLVKYPHLVILRTLSKA
                     FALAGLRCGFTLANEEVINLLLKVIAPYPLSTPVADIAAQALSPQGINVMRDRVAQTV
                     QERQYLVNALQQTACVEHVFDSETNYILARFTASSSVFKSLWDQGIILRDQNKQPSLS
                     GCLRITVGTRQENQRVIDALRAEPV"
     gene            complement(7172..8476)
                     /gene="hisD"
                     /locus_tag="OQP62_002137"
     CDS             complement(7172..8476)
                     /gene="hisD"
                     /locus_tag="OQP62_002137"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HCS1721686.1"
                     /translation="MSFNTLIDWNSCSPEQQRALLTRPAISAFDSITRTVSDILYNVK
                     TRGDDALREYSAKFDKTEVTALRVTPEEIAAAGARLSDELKQAMAAAVKNIETFHSAQ
                     TLPPVDVETQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPARIAGCQKVVLC
                     SPPPIADEILYAAQLCGVQEIFNVGGAQAIAALAFGSESVPKVDKIFGPGNAFVTEAK
                     RQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPDAD
                     IARKVAEAVERQLAELPRAGTARQALSASRLIVTKDLAQCVAISNQYGPEHLIIQTRN
                     ARDLVDAITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV
                     QELSKAGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA"
     gene            complement(8579..9478)
                     /gene="hisG"
                     /locus_tag="OQP62_002138"
     CDS             complement(8579..9478)
                     /gene="hisG"
                     /locus_tag="OQP62_002138"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HCS1721687.1"
                     /translation="MLDNTRLRIAIQKSGRLSDDSRELLARCGIKINLHTQRLIAMAE
                     NMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYLTLRRLDFG
                     GCRLSLATPVDEAWDGPAALDGKRIATSYPHLLKRYLDQKGVSFKSCLLNGSVEVAPR
                     AGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMAQSKQQLIDKLLTRIQ
                     GVIQARESKYIMMHAPSERLEEVIALLPGAERPTILPLAGEQQRVAMHMVSSETLFWE
                     TMEKLKALGASSILVLPIEKMME"
     misc_feature    complement(9526..9649)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            complement(9625..9666)
                     /gene="hisL"
                     /locus_tag="OQP62_002139"
     CDS             complement(9625..9666)
                     /gene="hisL"
                     /locus_tag="OQP62_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="his operon leader peptide"
                     /protein_id="HCS1721688.1"
                     /translation="MTRVQFKHHHHPD"
     gene            9829..10653
                     /locus_tag="OQP62_002140"
     CDS             9829..10653
                     /locus_tag="OQP62_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1721689.1"
                     /translation="MKKVAIVGLGWLGMPLAMSLAARGWQVTGSKTTLDGVEAARMSG
                     IESYPLRLEPELVCEADDLDALLDVDALVITLPARRSGPGEDFYLQAMQELVDSALAY
                     RIPRIIFTSSTSVYGDAQGVVKENTPRNPVTASGRTLKELEDWLHNLPGTSVDILRLA
                     GLVGPGRHPGRFFAGKTAPDGQHGVNLVHLEDVVGAITLLLQAPKGGHIYNICAPAHP
                     ARNVFYPQMTRLLGMAPPHFRDAPDNGKGKIIDGSRICNELGFEYQYPDPLVMPME"
     gene            10699..11613
                     /locus_tag="OQP62_002141"
     CDS             10699..11613
                     /locus_tag="OQP62_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1721690.1"
                     /translation="MKPLLDVLIILDALEKEGSFAAASAKLFKTPSALSYTVHKLEND
                     LNIQLLDRSGHRARFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDT
                     FPFSLLAPLIDAFYQRHSVTRLKFVNGVLGGSWETLTQGRADIIVGAMRAPPPDTGFG
                     FARLGDLELVFAVAPHHPLVHEEEPLSRQTIKRFRAIVVGDSVHSSRSIGSELLDAQE
                     AITVFDFKTKLELQISGLGCGYLPRYLAQRFLESGALIEKKVVAQIVYEPVWVGWNEQ
                     TAGLASGWWRDEILANNAIAGVYAKSPV"
     gene            11847..11909
                     /gene="yoeI"
                     /locus_tag="OQP62_002142"
     CDS             11847..11909
                     /gene="yoeI"
                     /locus_tag="OQP62_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein YoeI"
                     /protein_id="HCS1721691.1"
                     /translation="MGQFFAYATAFAVKENDHVA"
     gene            11899..13257
                     /gene="plaP"
                     /locus_tag="OQP62_002143"
     CDS             11899..13257
                     /gene="plaP"
                     /locus_tag="OQP62_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416518.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine/proton symporter PlaP"
                     /protein_id="HCS1721692.1"
                     /translation="MSHNVTPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGIVS
                     GLTDGHVPTAYAFALIAILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSS
                     LLDYLFAPMINILLAKIYFEALVPSIPSWVFVVALVAFMTAFNLRSLKSVANFNTVIV
                     VLQVVLIAVILGMVVYGVFEGEGAGTLASTRPFWSGDAHVIPMITGATILCFSFTGFD
                     GISNLSEETKDAERVIPRAIFLTALIGGLIFIFATYFLQLYFPDISRFKDPDASQPEI
                     MLYVAGKTFQVGALIFSTITVLASGMAAHAGVARLMYVMGRDGVFPKSFFGYVHPKWR
                     TPAMNIILVGAIALLAINFDLVMATALINFGALVAFTFVNLSVISQFWIREKRNKTLK
                     DHFQYLFLPMCGALTVGALWVNLEESSMVLGLIWAGIGLIYLACVTKSFRNPVPQYED
                     VA"
     gene            complement(13393..14823)
                     /gene="sbcB"
                     /locus_tag="OQP62_002144"
     CDS             complement(13393..14823)
                     /gene="sbcB"
                     /locus_tag="OQP62_002144"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HCS1721693.1"
                     /translation="MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVI
                     GEPEVFYCKPADDYLPQPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVG
                     YNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDD
                     GLPSFRLEHLTQANGIEHSNAHDAMADVYATIAMAQLVKTRQPRLFDYLYSHRSKHKL
                     AALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELD
                     SDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDN
                     LKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQLYDGFFSDADRAAMKIVLETEPRNL
                     PALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTPEFLQQYANELQM
                     LSQQYAEDKTKLGLLKSLWQYATEIV"
     gene            complement(15190..16692)
                     /locus_tag="OQP62_002145"
                     /pseudo
     CDS             complement(15190..16692)
                     /locus_tag="OQP62_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461011.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="type III secretion system effector HECT-type E3
                     ubiquitin transferase"
BASE COUNT         3802 a         4318 c         4505 g         4067 t
ORIGIN      
        1 tggcttgtct aatggtttgc ttattgcaca acaccatgat gtggtggcgt tagacattgt
       61 tcctgcccgt gttgaactgt taaatgatcg gatatctccg attgttgata aagaaattca
      121 gcaattttta aaggaagata acatcagatt cagggcaacg ctggataagt ttgatgcata
      181 ccagaatgca gattacgtca tcattgctac gcctacagat tacgatccaa aaaccaacta
      241 ttttaatacg ttcagtgtag aatcggtcat tcaggatgtg atcagcatca accccgcagc
      301 cgtgatgatt attaagtcta cggtgccggt tggctttacg gcggcaatgc gtcagaagtt
      361 tgcgacagaa aatatcattt tctctccgga atttttacgt gaaggtaaag ccctttacga
      421 taacctttat ccctcccgta tcgtgattgg ggaacagtct gagcgcgccc gagaatttgc
      481 cgcattactc caggaaggcg ctattaaaca ggagattccg acgctgttta cggactccac
      541 tgaagcggaa gccattaaac ttttcgccaa tacttacctc gccatgcgag tcgcttattt
      601 taatgaatta gacagttatg ctgaaacgtt aggattaaat acccgacaaa ttattgaagg
      661 ggtgtgcctc gacccgcgta ttggcaatca ttacaataat ccctcttttg gttatggcgg
      721 atattgtttg ccaaaagata ccaaacagtt gctggctaat tatcagtcag tgcctaataa
      781 tattatctcc gctatcgttg aagcaaaccg tacgcgtaaa gattttattg ccgattctat
      841 ccttgccaga aagcctaaag tggtgggcat ttatcgcctg attatgaaga gtggctccga
      901 taacttccgc gcctcatcga ttcaggggat tatgaaacgt attaaagcga aaggcgtaga
      961 ggtcatcatc tatgagccgg taatgcaaga agaaactttc tttaactcac gtcttgaacg
     1021 tgatttgcac tgctttaaac agcaggcgga tgtcattatt tccaatcgga tggcggcaga
     1081 gcttttggat gtcgctgaaa aagtgtatac ccgcgatctt ttcggtagtg attaataagg
     1141 caatcggggc tgatgagtcc cgatgattta ttgaccaaat ggaaataatg tctgattttt
     1201 atcattaatc ctatggcata tattttcttt atgactacac tgtctccagc ttcatccttt
     1261 ttttagttag ggtatctatg acagtggata gtaatgcgtc ttccgggcgt gggaacgatc
     1321 cggaacagat tgatttgatt gagttattgc tacagttatg gcgtgggaag atgaccatta
     1381 ttgtagccgt tattatcgcc attttgctgg ccgtaggcta cctgatgata gccaaagaaa
     1441 aatggacatc cacggcgatt attacccaac ctgatgccgc gcaggttgcc acctatacca
     1501 acgcgctcaa cgtcttgtat ggcgggaatg cccccaaaat ctctgaagtg caggcgaatt
     1561 ttataagccg ctttagttct gcgttttccg cattatcgga agcgctggat aatcagaaag
     1621 agcgggaaaa gctcaccatt gaacagtcgg taaaggggca gacgctgccg ctctcggttt
     1681 cttatgtgag cactaccgct gaaggggcgc agcgtcggct ggcggaatat atccaacagg
     1741 tggatgaaga ggtcgctaag gaactggaag ttgacctgaa agataacatc acgctgcaaa
     1801 ccaaaacgtt gcaggagtcc cttgagacgc aggaagttgt ggcgcaggag caaaaagatc
     1861 tgcgtattaa gcaaatcgaa gaagcgttgc gctatgcgga tgaggccaaa atcacgcagc
     1921 cgcagattca gcaaacccag gatgttaccc aggacacgat gttcctgttg gggagcgatg
     1981 cgctaaaatc gatgatacag aacgaagcga cgcgtccact ggtcttttct ccggcctatt
     2041 accagacgaa gcagacactg ctggacatta aaaatctgaa agtgactgcc gatacggtgc
     2101 acgtctatcg ttatgtgatg aagccgacgc tgccggtccg tcgcgatagc ccgaaaacag
     2161 ccattaccct cgtgctggct gtgttgctgg gcgggatgat cggcgccggg attgtgctgg
     2221 ggcgcaatgc gctacgtagc tataagccaa aagccttgta agcttctttg ccggatggtg
     2281 gtcggcttcg aaaggtaaaa tttctcatta aaaaaccggg cattgcccgg tttttttacg
     2341 cttattgatg acgcttacga agatcgtcga tcacggtggt gaggttgaga tcctgatcct
     2401 gcaacagcac cagcaggtgg tacatcaaat cagacgcttc attggttaat tcaaaacgat
     2461 cattgacggt ggccgccagc gcggtttcta caccttcttc gccaactttt tgcgcaatac
     2521 gtttggtacc gctggcgtac agtttcgccg tgtaagagct ggccggatcg gcggttttgc
     2581 gctctgccag tagctgctcc agttgataca ggaataacca ctgatggctg gcgtcgccaa
     2641 agcagctgct ggtacctttg tggcaggtcg gcccgacagg gtttgccagc accagcagtg
     2701 tatcgttgtc gcaatctggc gcaatgctga cgacattcag cacatggcct gaggtttcgc
     2761 ctttggtcca taaacgctgt ttcgtgcgtg agaagaacgt gacatggccg gattcaatgg
     2821 ttttgtccag cgcttgtggg ttcatatagc ccagcgtcaa tacttcgccg gataccgcat
     2881 gttgcacgat ggctggcatc aggccatcgg ttttttccca gtccagctcg cggcgttgtt
     2941 gctctgttaa catatcctga tctccacgcc ctggcctgcc aggtacgctt ttaattcgcc
     3001 aatattgatg atttgcttgt gaaaaacgga ggcggcaagc gcgccgtcga catcggcatc
     3061 acggaatgcc tcaagaaagt gttccatcgt gcccgcgccg ccggaggcga tcagcggcac
     3121 gcggcaaacg tcacggactt ttttcaactg cgtcagatca taaccgttac gcacgccgtc
     3181 ctggttcatc atattcagga cgatttcccc cgcgccgcgc tgttgtacct cttgcaccca
     3241 gtccagcgtc tcccactgcg tcacgcgggt acggttttca tcgccggtat actggttaac
     3301 atgatatttc cccgtggcgt cgtcaaacca ggtatcaatc ccgacgacaa tgcactgcac
     3361 gccaaaacgg tcagccagac gggtaatcag cgttgggtca gccagtgcag gggagttgat
     3421 agagatctta tccgccccga aagagagaat tttggcggcg tcgtcaattg accggatacc
     3481 gcccgctaca caaaacggaa tgtcgatcac ctcggcaacg cgcgctaccc agcttttatc
     3541 gactacgcga ccatcgctgg aggcggtaat gtcatagaac accagttcgt ccgcgccttc
     3601 gtcggcatag cgtttggcca gcggaacgat atcgccaatg atctcatggt tgcgaaactg
     3661 tacgcctttt accacctgac catcacgaac gtccagacac ggaattatac gttttgccag
     3721 cattggatgg cctccttaac ggtaaatttc ccttccaaca gcgcgcgtcc gacaatcacg
     3781 ccgcgcacgc cggtgccgcg cagggcggca atatcatcga tatcgccaat accgccggag
     3841 gattgaaagg cgatctgcgg atatctggcg catatctctt cgtacagtga aacgttagag
     3901 cccgccagcg tgccgtcgcg agaaatatcg gtacacagta catgtttcag gccgacgggg
     3961 agataggtct ccaccagttg ttccagcgag acgccggaat tttcctgcca gccgctaacc
     4021 gccacctgct tgttgccgtg ttcgtctatg cgaacgtcca gcgccagtac cagcgcctgc
     4081 gcgccaaaac gttcaaacca gcctttcacc acgtcagggg atttcaccgc cgttgaaccg
     4141 atgaccacac gggcaacgcc agctttcagt aatgccgcaa cgtcttcttc ggtacgcacg
     4201 ccgccgccga cctgaacagg cacgttcacg cccgcgacca gagttttaat cagcggtatc
     4261 tgtcgcttag ccggatcttt agcgccggtc agatctacca gatgtagcac cccggcgccc
     4321 tgggcggcgt aatcctgcaa acggggcagg ggatcgttac cgtaatcccg ctgccgggcg
     4381 tagtcgccct ggtggagacg caccacggtg ccgtcaatta aatctaatgc cggaataatc
     4441 attacatctc caggaagttt ttcagcaact gtgcacccgc cgcgcccgaa cgttccggat
     4501 ggaactgtac gccgaagaaa ttatctttct gtaccgccgc ggtaaacggc tcgccgtaat
     4561 tgcactgggc gatagtccac gggttgaccg gcatcgcgta gctgtgaaca aagtaaaaat
     4621 aggcgccatc ttcaatgccc tgaaacagcc ggttgcccgc ctgcggatac acgcgattcc
     4681 agcccatgtg tggcagcggc agaccaaagt cggtcatttt cggcacatct tgttcgataa
     4741 tgttcagcag atccacgccg cgcgtctctt cgctgcgacg acccagcagt tgcatcccta
     4801 agcagatacc cagtaccggc tgagtacacg ctttaattaa gtcgatcagt tcacgttcgc
     4861 gcagttgatc catagcggct tgcgccgtgc cgacgccggg cagaaagagt ttgtcagcgc
     4921 gtaatacgat ttccgcttcg cggctgacca ccggggtgta accgtggcgc gccacggcgg
     4981 attttaccga gcttaaattg gcgcagccgg tgtcaaggat gacgacgttc atcacagcac
     5041 tcctttcgag gacggtaatg tatcgccctc cacgcgaata gcctggcgta gcgtccgacc
     5101 aaaggcttta aacaaacttt cgacacggtg gtgatcgttc ttacctttag tcttgagatg
     5161 cagagtgacg cccatcgtgt aagagagtga gcggaaaaag tgttcaatca tctctgtgct
     5221 caaatcgccc acacgctggt aggtaaattc agctttatat tccagatgcg gacgaccgga
     5281 aatatccagc gcgcagcgcg ccagacattc atccatcggt agtacaaagc caaaacggca
     5341 gataccgcgc ttgtcgccga gtgccagttt taacgcctca ccgagcgcca gcccggtatc
     5401 ttctaccgtg tggtgatcgt cgatatagag atcgccctta acggtaatct ccatgcgaaa
     5461 gccgccgtgg gtggcgattt gatcgagcat atggtcaaag aagccgacgc cggtattaat
     5521 cttgctgttg ccttcgcgat ccagccagac gctgacatca atctgtgtct ctttggtgtt
     5581 gcggaccaca tgcgcatagc gatcgcgttt cgttagctgt tcgccaatca tcgtccagtt
     5641 caacgtttca cggtgatagc gtaaaccagt aatgcccata ttatcagcga gttggatatc
     5701 ggttgcacga tcgccaatca catagctgtt ggcgctatcc atcgcttgtt ccgcaagata
     5761 acgctccacc agcttcactt tgggcttgcg gcagtcgcag tcgtctgcgg gcaggtgagg
     5821 gcagatcagc acctcatcaa agcatacgcc ctgagaagtg aaaatctgca tcatcaggtt
     5881 gtgcggtccg tcgaagtccg cctgcgggaa gctttgcgtg ccaagtccat cctggttagt
     5941 gatcatcacc agcttaaaac cggctttttg cagcttcagc aatacgggaa tcacctctgg
     6001 ctcaaaggcc agtttatcaa agtggtctac ctgaaaatcg ctcggcggtt cggaaattaa
     6061 ggttccgtcc cggtcgatga aaagatactt ctgactcata ctggctccgc acgtaaggcg
     6121 tcaatgacgc gctggttttc ctggcgggtg ccgaccgtaa tccgcaggca gccgcttaaa
     6181 gaaggttgtt tattctgatc gcgtaagata atgccctgat cccataagga tttaaacacg
     6241 ctgctggagg cggtaaaccg cgccagaata tagttggttt cagagtcaaa gacgtgttct
     6301 acgcaggcgg tctgttgcag ggcattcacc agatactgac gttcctgcac tgtctgcgcc
     6361 acgcgatcgc gcattacgtt tattccctgc gggctcagcg cttgggcggc gatatccgcc
     6421 actggcgtag aaagcggata aggggcgatc acttttaaca gcaggttgat cacctcttca
     6481 ttagccagcg taaagccgca gcgcagaccc gccagcgcaa aagctttcga caatgtgcgc
     6541 aggataacca gatgaggata tttaaccagc cagcctgcca gcgtggcctg cgggcaaaac
     6601 tcaatataag cttcgtcggc gacgactatc gctttaccgc gtgtcaactc cagcagcgtg
     6661 cgcagatcct gcgggttgat aagttgcccg gtaggattat tggggctaca aacgaacacc
     6721 acttttgcgc cgtcaaggtt gtcggaaatc ccctgtagat ccagctgcca gttttcaagc
     6781 gcgggaaccg tccggcgctc tacgccaatg gtttcggcgc tgacgctgta cataccgtaa
     6841 gtgggcggac agtagagaat ggcgtctttc cccggttcgc agaaggcgcg gatcaccagt
     6901 tcgatccctt catccgcgcc gcggctgacc agcacctgct ccggctttac gccagcatat
     6961 tgcgcgtagt tttcaatcac ggcctttggc tggcattccg ggtagcggtt aagcgtttgt
     7021 tgggtgagct gaaactccac cgctgtcggg aattcattcg cgttcagcca gacatcgccg
     7081 ttaccgccca gacggcgggc ggactgatac ggtaccaggt tgcggacatt ttcacgggct
     7141 aagtctgcga cgctgagagt gttttcagtg ctcatgcttg ctccttgagg gcgtttacgc
     7201 gcagggtcac ggcattttta tgggcggtca gacgttctgc cgccgccaat gtttcaatgg
     7261 ttgatgccag agcggaaaag cccgctttcg acagttcctg aacggtcatc cgtttctgga
     7321 aatccgctaa cccaaggctg gaacaggtag cagtatagcc ataggtcggt aaaacatggt
     7381 tggttccgga agcgtaatca ccggcggatt ccggcgacca gtcgccgaga aataccgagc
     7441 ctgcgctggt aatcgcatcc accaaatcgc gcgcattgcg cgtctggata attaagtgtt
     7501 ccggcccata ctgattagag atggcgacgc actgcgctaa atctttggtc acaatcagac
     7561 gactggcgct cagggcctgc cgggcggtgc ccgcgcgcgg cagttccgcc agttgacgtt
     7621 ctaccgcctc cgccaccttg cgggcaatgt cagcatccgg cgtcagcagg atcacctggg
     7681 aatccgggcc gtgctcagcc tgggagagca ggtcagaagc gacgaaatcc ggtgttgcgc
     7741 cgctgtcggc gatcaccagc acttcagacg gcccggctgg catatcgata gccgcgccgt
     7801 cgagacgctg gctgacctga cgcttggctt cggttacaaa ggcgttgccg gggccaaaaa
     7861 ttttatccac tttcggtacg gactcgctgc cgaaggccag agcggcaatc gcctgcgcgc
     7921 cgccgacgtt aaagatttcc tgcacgccac acagttgcgc cgcatagagg atttcatcag
     7981 cgatgggtgg cggcgagcac agaaccacct tctggcatcc cgcaatgcgc gccggcgtcg
     8041 ccagcatcag caccgttgag aagagcggag ccgagccgcc gggaatatac agaccgacag
     8101 acgcgacggg acgcgtaacc tgctggcaac gcacgcctgg ctgggtttcc acatctacag
     8161 gcggtagcgt ctgcgcggaa tggaacgttt caatattttt gacggcagcg gccatcgcct
     8221 gttttaattc gtcgctcaga cgcgcgccgg cggcggcgat ctcttcaggg gtgacgcgta
     8281 gcgctgtcac ttctgtttta tcaaatttag cgctgtattc acgcagggca tcgtcaccgc
     8341 gcgtttttac attatacaga atatcgctga ccgtccgggt aatactgtca aaggcggaaa
     8401 tcgccggacg cgtcagcagc gcacgctgct gttcagggct acagctgttc cagtcaatca
     8461 gggtattgaa gctcatggtc tttactccat cacagggttc cgccttatcc ggcctactga
     8521 acccaaaata tcaacgcatt acgtaggcct gataagcgca gcgccatcag gcgtcagatc
     8581 actccatcat cttctcgatc ggcagtacca gaatcgagct ggcgccaagc gctttcagtt
     8641 tctccatggt ttcccagaac aacgtttcgc tgctgaccat gtgcatcgcc acgcgctgtt
     8701 gctcgcctgc cagcggcaga attgtcggcc tttcggcgcc tggcagcagg gcgataacct
     8761 cttccagtcg ttcacttggc gcgtgcatca tgatgtattt cgattcgcgc gcctgaatca
     8821 cgccctgaat acgggtcagc aatttatcga tcagctgttg cttgctctgt gccatctcac
     8881 cgtcgcgctg aatcagacag gctttagagc ggtagataac ttcgacttca cgcaggccgt
     8941 tagcttcaag cgtcgcgccg gtagagacca aatcgcagat agcgtcggcc agccccgcgc
     9001 gcggcgcgac ttcgacagaa ccatttaaca gacacgattt aaaagagacg cctttctggt
     9061 cgaggtagcg tttgaggagg tgcggataag aggtagcgat acgtttaccg tccagcgcgg
     9121 ccgggccgtc ccaggcttcg tcaaccggcg ttgccagcga taaacggcag ccgccgaagt
     9181 caagacggcg cagggttaaa tagcgtggat cttcgccctg cgcgcggcgg ttgagtagct
     9241 cttcttccag cacgttttcg ccgataatac cgagatcgac cacgccatcc atcaccagac
     9301 ccggaatgtc atcatcacgc acgcgcagga tatcaatcgg catgttttcc gccatcgcaa
     9361 tcaggcgctg agtgtgtaaa ttaattttta tgccgcagcg ggccagcaat tctcgtgaat
     9421 catcgcttaa acggcctgat ttctgaatag ctatgcgtaa gcgggtgttg tctaacattc
     9481 tgcgttcctc tttatcctgt ctgaaccggt ctgtatcgcg cgccaaaaaa aaagcccccg
     9541 gaagatgatc ttccgggggc tttctcatgc gttcatgcac cactggaaga tctgaatgtc
     9601 ttccagcaca catcgcctga aagactagtc aggatgatgg tgatgtttaa attgaacgcg
     9661 tgtcataaaa attccgatga atgcttattc atttgatacc ttttaaccta aaccactttt
     9721 acgccttaaa gcaagcgctt ttttcatttc gcatttatag tatgaattgt cagtcacggc
     9781 gggctggcgt agccttatgt ataaggcgtt aaagtcagga gaaaatggat gaaaaaggtc
     9841 gcaattgtcg gtttaggttg gttaggcatg ccgctggcaa tgtcgctggc agcgagaggc
     9901 tggcaggtta ccggcagcaa aaccaccctt gacggggtgg aagcggcccg tatgagtgga
     9961 attgaaagct atccgctgcg tctggagccg gagctggtct gtgaggcgga cgatcttgac
    10021 gctctgctgg atgtcgatgc gctggtgata acactgcccg cgcgccgtag cggtccggga
    10081 gaggattttt atctgcaggc gatgcaggag ctggtcgaca gtgcgctggc ttatcgtatc
    10141 ccgcgtatta tttttaccag ttcgacgtct gtttacggcg atgcgcaagg cgtggtgaaa
    10201 gagaatacgc cgcgtaatcc ggtcacggcc agcgggcgta ccctgaagga actggaagat
    10261 tggctgcata atctgccggg cacgtcagtg gatattctgc ggctggcggg gttagtcggg
    10321 cctgggcgcc atcccggacg tttctttgcc ggaaaaaccg cgccggatgg tcaacacggg
    10381 gtcaatctgg tgcatcttga agacgtggtt ggcgcaatta cccttttgct acaggcgcca
    10441 aaaggggggc acatctataa tatatgtgcg ccggcgcatc cagcccgcaa cgtgttttat
    10501 ccgcaaatga cgcgcttgct gggaatggcg ccgccgcatt ttcgtgacgc accggacaac
    10561 ggcaaaggga agattatcga cggtagccgg atttgtaatg agctgggatt tgaatatcaa
    10621 tatcccgatc cgttggtgat gccgatggag tgagtcgctg tccagcaggt ggtcgccata
    10681 tagcgcaagg ggacgagtat gaaaccactg ctggacgttc tgattattct tgatgcgtta
    10741 gaaaaagaag gcagcttcgc ggcggcgtcg gcaaaattat ttaaaacgcc gtccgccctc
    10801 agttataccg ttcataagct ggaaaacgat cttaatatcc aactgctcga ccgtagcggg
    10861 catcgcgcgc gatttacgcg aaccggtaag atgctactgg aaaaaggccg tgaagtgttg
    10921 cacaccgttc gcgagctgga aaagcaggcg attaaactgc atgaaggctg ggagaacgaa
    10981 ctggtcatcg gtgtggatga tacctttccc ttttctcttc tggccccgct tatcgacgct
    11041 ttttatcaac gccacagcgt gacgcgcctt aaatttgtca atggcgttct cggcggttca
    11101 tgggagacgc tgacgcaggg aagggcggat attattgttg gcgccatgcg cgcgccgccg
    11161 cctgacaccg gctttggctt tgcaagactg ggcgatcttg aactggtgtt tgctgtcgcc
    11221 ccgcatcatc cgctggttca tgaagaggaa ccgcttagcc gccagacgat caaacgtttt
    11281 cgcgcgattg tggttggcga tagcgtccat tcctcgcgat caatagggtc tgaactgctc
    11341 gacgctcagg aagcgattac cgtgtttgat tttaaaacca agctggagct gcaaattagc
    11401 ggcctgggat gcggctattt accgcgttat ctggcgcagc gatttttgga aagcggcgcg
    11461 cttatagaga agaaagttgt ggcgcaaatc gtctatgaac cggtgtgggt tggctggaat
    11521 gaacagaccg ccgggctggc cagcggctgg tggcgggatg aaattttagc aaataatgct
    11581 attgctgggg tgtatgcaaa atcgccggtt taaaaatcaa tcgcttatga aaaataattt
    11641 tttgaacgcg ctcgcattct cttgtcattt cacttcaatt tagggcagaa tatgccgctt
    11701 gcaaaaaatg acactaaccg acgttttaat acgcgtcggt tatttttttg cttcaaacac
    11761 atcattcaat accaagaggc cgggcttcgt accggataga tacttactta aaaatcgaca
    11821 gttgttgtcg ctgaggaatc cagaaaatgg ggcaattttt tgcttacgcg acggcattcg
    11881 ccgtaaagga gaatgaccat gtcgcataac gttactccaa acacctctcg cgtggaatta
    11941 cgtaaaacgc ttacgttagt tccggttgta atgatgggtc ttgcctatat gcagccgatg
    12001 acgctgttcg atacatttgg tatcgtttca ggcctcactg acggtcacgt accgacggcg
    12061 tatgcattcg cgttaatcgc gattctgttt acggcgttga gctacgggaa actggtgcgt
    12121 cgctatcctt ccgcgggttc ggcgtacacc tatgcccaga aatccatcag cccgaccgtt
    12181 ggctttatgg tgggttggtc ttctctgctc gattatctgt tcgcgccgat gatcaacatt
    12241 ctgttggcga aaatttattt tgaagcgctg gtgccctcca ttccctcatg ggtgttcgtc
    12301 gtggcgctgg tggcctttat gacggccttt aacctgcgca gcctcaaatc ggtcgctaac
    12361 ttcaacactg tgattgtggt gctacaggtg gtgctgattg cggtcattct gggcatggtg
    12421 gtttatggcg tatttgaagg cgaaggcgcc ggtacgctgg cgagcacccg tccgttctgg
    12481 tccggcgatg cgcacgttat cccgatgatt acgggagcga cgatcctgtg cttctccttt
    12541 accggctttg acggcatcag taacctgtcg gaagagacca aagatgctga gcgcgtgatc
    12601 ccgcgtgcga ttttcctgac cgcgctgatt ggcggcctaa tcttcatctt tgcaacctat
    12661 ttcctgcaat tgtacttccc ggatatctct cgctttaaag atccggatgc gtctcagccg
    12721 gaaatcatgc tgtacgtggc gggtaaaacc ttccaggtgg gcgcgctgat cttctctact
    12781 atcaccgtac tggcttccgg tatggcggcg catgcaggcg tagcgcgcct gatgtacgta
    12841 atggggcgcg acggcgtatt cccgaaaagc ttcttcggtt acgttcatcc gaaatggcgt
    12901 acgccagcga tgaacatcat cctggtcggg gcgatcgcgc tgctggcgat taattttgac
    12961 ctggtgatgg cgacggcgct gattaacttt ggcgcgctgg tcgcgtttac cttcgttaac
    13021 ctgtcggtga tttcgcagtt ctggatccgt gagaagcgta ataagacgtt gaaggatcac
    13081 ttccagtatc tgttcctgcc catgtgcggc gcgctcacgg ttggcgcgtt gtgggttaac
    13141 ctggaagaaa gctcaatggt actgggcctg atctgggcgg gtatcgggct gatttatctg
    13201 gcgtgcgtaa ctaaaagctt ccgcaacccg gttccacagt acgaagacgt cgcgtaatcg
    13261 cgcgtattat cggcaatagt aaaaccggag gcagtgcctc cggttttttg tctgccatcc
    13321 agcacgttta ccggatggcg gcgtcactat ttatccgctc tggattaaca atgcccgtca
    13381 ggcattggtc aattacacaa tctcagttgc gtactgccac agtgatttca gcagccccag
    13441 cttcgtttta tcttccgcat actgctgaga aagcatctgc aattcattgg catactgttg
    13501 taaaaactct ggcgtcagta cctgacggcg atgctccagc cagcgctgct gctctgcgtc
    13561 atccagcgta ccgggaaaat tgcgtgcgcg gtaattaaac agcagcttct caatgcgctt
    13621 atcgacaaag gtaatgtcca gcgcgggcag gttacgcggc tcggtttcga gtacgatttt
    13681 catggctgcg cgatcggcat cgctgaaaaa accatcatag agctgggcat caacgttatc
    13741 cgaggtggca aaaggttcgg cttcggcgaa aatcgccacc actttgtcgc ggacctgcgg
    13801 gttttcacgc agcactttca ggttatccag gcaatgctgg cggttaattc ccagccggtc
    13861 ggcatcctcc gggcgcaagg tattcgcctg cgccagtacc ggacatttat tgatatgcac
    13921 cagctttacc ggcactgcgg cgtgatcgcc aagatcggct ttggccgtat aaagccgctc
    13981 gcgaagggtg tcgctgtcca gctcaagaag aggagaaata tcgcctgcta aatcgaccat
    14041 gatcaccgcg ttacggtttt caggatgcca cgccagcggc gcgacccagc ttgtattacc
    14101 gcgccacgcg ccaaacatgc cggagacatg caccagcggc ttcatttgcg gaacgtcaat
    14161 cagcgccgcc agtttatgtt tactgcggtg gctataaaga taatcaaaca gtcgcggctg
    14221 gcgtgttttc accagttgcg ccatcgcaat agtggcgtag acatccgcca tcgcatcatg
    14281 cgcgttgctg tgttcgatcc cgttcgcctg ggttaaatgt tccagacgaa agctgggcag
    14341 gccgtcgtcg ttttccggcc agttaattcc ctccgggcgc agcgcataac aggcgcgcat
    14401 gacatccaat agatcccaac gtgaattatc atgctgccag ctccaggcgt agggatcgta
    14461 aaagttgcga taaaaaatat tgcgcgtgac ttcatcatca aaacgtacat tgttgtagcc
    14521 cacaacgcag gttttaggaa cggtaaacag cgcatgaatg cgtctggcga aagcggcttc
    14581 gttttctcct ttctcacgcg cttcctgcgg cgtgatgccg gtaatcagca ctgcgccggg
    14641 ctgcggtaga taatcatcgg cgggtttgca ataaaacacc tccggctcgc caataacgtt
    14701 gaagtcgtta tccgtacgga gcgcggcgaa ttgcgcaggt ctgtcgaggg ccggatgcgt
    14761 accgaaggtt tcgtaatcgt ggaagaggaa tgtgctctgt atgctgtcgt ttttaactgt
    14821 cacttgatgt acacgcctga tgttatctgt atatgaaata ttttattctt ttattttgtc
    14881 gttgattgat tgtatttgta caccaattga tattgttgct aatgttcgta catgcgatgg
    14941 tgagtacata aacattaaaa tcattgagta caaaatacta aaatgaccat cagcgacact
    15001 aagctacgct ccctctatgg taaaccatat tccggcccat ctgaaattac tgattttgat
    15061 ttagtactgt atggaattta ggccagggtc aatctggccg ggatctcaaa aaatgcatgg
    15121 actaaaacgg gtctatgtac agagggacac aacgctgtgt cccttaattt catgcgggtt
    15181 gaggctggac taggcccagg ccagtggcag gatggatgac agaacactcg ggaaatattt
    15241 tctggcatga cgttgcatac tatccaccac aacgctggta caggtaaagg cgccatggag
    15301 gccgtgaaaa cggtcggacc agtcggtaaa ctgttcgctg gacgggaaga tcgccggaga
    15361 cagctcccag tctttctgca tcagcgcctc cgcatagcct ctcagggccg gcggagagtc
    15421 atgctcagtg ccgaaaatgg cgctggagga atagcgtgcg aatgcggtac taagacagaa
    15481 cagggtttcc gcctgcttct gtggggtggc gtccgtcagg tgataagcac tgaggatgtg
    15541 ctggtagtgt gccgggctga gtttgccttc aggaagcagg gggtcaaaaa tggtgttcag
    15601 acgcgacact gaggcatcat caatcaactt cacggtggaa tgtttctggg tcgtggcggc
    15661 aataaactgc tggttcagct ccccgtgctc ttcagcgctg aggatgatat caatcagttc
    15721 cccaaagcgt cgctgcacgg cctgctgatt aaatgcggcg agaaacaccg gaaagtcatg
    15781 acggaataac tctaccggag agatttgcgc ggtggaaacg ttctctccgg ctcgcagcag
    15841 gtaaaagttg tcccatgcag tgtcaggagt agggtttagc attgttaaca gcgtgtcagt
    15901 ggagagcatc atcgccgtgt ctgaatcctg ggaggaaagc agcaggaaat tatctgcagc
    15961 gcgggttgtc cagtccgggc tgccgtcata attgccgaag agcccattat ggatgtgggg
    16021 agacaccgtt gggtgagcaa gatatcgttc ataaagcgct gcagctttct ggcgggtgcc
    16081 atcagtgcag cccacgcctg tcatacagtg taaaatcacc tgattaaaga gtccgttgtg
    16141 agtggtcatg gcggcgttgt tcctgtcaaa cgaatccagc aacacaggcc gtatgcgctg
    16201 ctgataatat gtgtcaggag ccggcagggg aacgtcatta taggtctggc actggtgggc
    16261 aaaaaaacgt tcctgaacag gcccgagcca ctcgctgata agcgtacttt gcgtataggg
    16321 ggggccagta cgctcaccag cgaactttca actggccgga tacatgcctc tgttaagcgg
    16381 ccactccgca atgacttaac caggtcttcc attgcccgga ctttttcctg actgtattta
    16441 tcgggcaggc tgtcaatggt tatcagaata cttttaccat tattgtgctc atgatttaaa
    16501 aatccatcca cagcgttctc agtccaaagg agtggcattt gcggccagat atcacctgga
    16561 cgaataaaat tttcgccccc tgatactgac ggaggtgatg aattatccgg ttcatttaaa
    16621 ataacgccag agaggttggc tttgtgacgt ataagcgtat tttttaatgt tgtatcaata
    16681 aaagagggct gt
//
LOCUS       DAJVSD010000081        16640 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.081, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000081 DAJVSD010000000
VERSION     DAJVSD010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 16640)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16640)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16640
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.081"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            152..1558
                     /gene="chiP"
                     /locus_tag="OQP62_002146"
     CDS             152..1558
                     /gene="chiP"
                     /locus_tag="OQP62_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitoporin"
                     /protein_id="HCS1721694.1"
                     /translation="MRTFSGKRSTLALAIAGITAMSGWIVVPQAQASGFFDDSTLTGG
                     IYYWQRERDRKDVTDGDKYKTNLSHATWNANLDFQSGYAADMFGLDIAAFTAIEMAEN
                     GDSGHPNEIAFSKKNKGYDEDYSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL
                     APHWSFMPGTYQGAEAGASFDYGDAGALSFSYMWTNEYKAPWHTEMDKFYQADKKTNV
                     DYLHSIGAKYDFKNDLVLEAAFGQSEGYVDQYFAKASYKFDLGGNPFTTSYQFYGARD
                     KVDDRSVNDIYDGTAWLQALTFGYKVAEVVDLRLEGTWVKADGQQGYFLQRMTPTYAS
                     SNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGWAVGASYVYAWDAKPATWQS
                     NPDAYYDKNRTIEESSYSLDAVYTLQEGRAKGTMFKLHFTEYDNHSNIPSWGGGYGNI
                     FQDERDVKFIVIAPFTIF"
     gene            1608..1940
                     /locus_tag="OQP62_002147"
     CDS             1608..1940
                     /locus_tag="OQP62_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1721695.1"
                     /translation="MKKILLIASMTAGLTACASSPAPEEDSRLKEAYSACINTAQGSP
                     EKIEACQSVLNVLKKERKHQQFANEESVRVLDYQQCIQATRTGNDQAVKADCDKVWQE
                     IRSHNNVQ"
     gene            complement(1989..3293)
                     /gene="tcuC"
                     /locus_tag="OQP62_002148"
     CDS             complement(1989..3293)
                     /gene="tcuC"
                     /locus_tag="OQP62_002148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tricarballylate/proton symporter TcuC"
                     /protein_id="HCS1721696.1"
                     /translation="MAQHTPATSRAGTFGAILRVTSGNFLEQFDFFLFGFYATYIART
                     FFPAESEFASLMLTFAVFGSGFLMRPVGAIVLGAYIDRIGRRKGLMVTLAIMGCGTLL
                     IALVPGYQTIGLAAPALVLLGRLLQGFSAGVELGGVSVYLSEIATPGNKGFYTSWQSA
                     SQQVAIVVAALIGYSLNITLGHDAISEWGWRIPFFIGCMIIPLIFVLRRSLQETEAFL
                     QRKHRPDTREIFATIAKNWRIITAGTLLVAMTTTTFYFITVYTPTYGRTVLNLSARDS
                     LIVTMLVGVSNFIWLPIGGAISDRIGRRAVLMGITLLALITTWPVMQWLTAAPDFTRM
                     TLVLLWFSFFFGMYNGAMVAALTEVMPVYVRTVGFSLAFSLATAIFGGLTPAISTALV
                     KLTGDKSSPGWWLMCAALCGLAATAMLFVRLSRGYIAAENKA"
     gene            complement(3344..4483)
                     /gene="tcuB"
                     /locus_tag="OQP62_002149"
     CDS             complement(3344..4483)
                     /gene="tcuB"
                     /locus_tag="OQP62_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tricarballylate utilization protein TcuB"
                     /protein_id="HCS1721697.1"
                     /translation="MKQLEKLIIEATVLTEPEAEVERVMQVCNACRYCEGFCAVFPAM
                     TQRLEFGKADIHYLANLCHNCGACLHACQYAPPHEFAINVPKAMAQARLETYQQYAQP
                     AAFGALYRRAGITVALALIVGLTLFLLLAMALKGSLIHPPLAGDFYQIFPHSLLAWMF
                     GSVFVLAIGLLMAGVISFWREISPGVPRSAEIAEASHNALTLKYLDGGHGKGCNEADD
                     AFTLLRRRFHHFTFYGFMLCFAATVVATGYHYVAGWEAPYPFFSLPVMLGTLGGIGLL
                     IGPAGLLWLNLRRSPLHSDARQKPMDRGFILLLFLTSLTGLALLAGRDTSGMGILLAL
                     HLGVVMALFLTLPYGKFAHGFFRCAALLKWAVEKRRGKHAGDTGN"
     gene            complement(4470..5873)
                     /gene="tcuA"
                     /locus_tag="OQP62_002150"
     CDS             complement(4470..5873)
                     /gene="tcuA"
                     /locus_tag="OQP62_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent tricarballylate dehydrogenase
                     TcuA"
                     /protein_id="HCS1721698.1"
                     /translation="MVDVLVIGGGNAALCAALTAREAGASVLLLEAAPREWRGGNSQH
                     TRNLRCMHDAPQDVLVESYPEEEFWQDLWRVTDGNTNEALARLVIRTSSQCRDWMRKH
                     GVNFQPPLSGALHVARTNAFFMGGGKALVNAYYRSAERLGVQIRYNTPVHALELHDGE
                     FVAALAGSERITAKACVLAAGGFESNREWLREAWGENARGEWPADNFLIRGTRFNQGV
                     LLKFMMDAGADIIGDPSQSHCVAIDARAPLYDGGICTRVDCVSLGIVVNRDAERFYDE
                     GEDFWPKRYAIWGRLVAQQPGQIGYSIIDSKAIGHFMPPVFPGAQANTLAELACQLGL
                     DAEKFTHTVTQYNQACQPGHFDHTLLDDCATKNLTPAKTHWARPLDAPPYYGYALRPG
                     ITFTYLGLKVNERAAVHFAGHPSRNLFVAGEMMAGNVLGKGYTAGVGMSIGTTFGRIA
                     GIEAARAAHKEAQHETA"
     gene            complement(5971..6897)
                     /gene="tcuR"
                     /locus_tag="OQP62_002151"
     CDS             complement(5971..6897)
                     /gene="tcuR"
                     /locus_tag="OQP62_002151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tricarballylate utilization LysR family
                     transcriptional regulator TcuR"
                     /protein_id="HCS1721699.1"
                     /translation="MELRQLRYFVRIIETGSMGSAAQDLDIGVSALSQQMSRLENELA
                     IRLLQRTSRGVTPTNAGLAFYSQAQLALRHADDAILAAREARLSGHVSVGMAPSTASI
                     LGIPFIHAMQENYADVRLHVVESLSGNLERMINTRQIDLAVVFQKDKILRWSARPILE
                     EQLFLIGSHALLAALPDNPITPEQLAGIPLIMPSQGHGLRGRLDAVCKEHALNVEIVA
                     EIDGLALLMRAVRDGLGATLQPGAAISHLDNDALRVIGVHNPVLSRPNFLVSLSDDEL
                     TPAGLAARVVLTKVMRQLVDAGEWPGATLYAY"
     gene            complement(7012..7464)
                     /gene="fur"
                     /locus_tag="OQP62_002152"
     CDS             complement(7012..7464)
                     /gene="fur"
                     /locus_tag="OQP62_002152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HCS1721700.1"
                     /translation="MTDNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLI
                     DMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEF
                     SDDSIEARQREIAAKHGIRLTNHSLYLYGHCAEGDCREDEHAHDDATK"
     gene            complement(7457..7542)
                     /locus_tag="OQP62_002153"
                     /pseudo
     CDS             complement(7457..7542)
                     /locus_tag="OQP62_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001491546.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ryhB-regulated fur leader peptide"
     gene            complement(7746..8276)
                     /gene="fldA"
                     /locus_tag="OQP62_002154"
     CDS             complement(7746..8276)
                     /gene="fldA"
                     /locus_tag="OQP62_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HCS1721701.1"
                     /translation="MAITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDL
                     EGYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDAL
                     GTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKW
                     VKQVSAELHLGDILNA"
     gene            complement(8427..8720)
                     /gene="ybfE"
                     /locus_tag="OQP62_002155"
     CDS             complement(8427..8720)
                     /gene="ybfE"
                     /locus_tag="OQP62_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA regulated protein"
                     /protein_id="HCS1721702.1"
                     /translation="MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKR
                     DKVRGLKRVELKLNAQAVDALNELAEARNISRSELIEEILMKQLMALRGQGLV"
     gene            complement(8854..9624)
                     /gene="ybfF"
                     /locus_tag="OQP62_002156"
     CDS             complement(8854..9624)
                     /gene="ybfF"
                     /locus_tag="OQP62_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HCS1721703.1"
                     /translation="MKLNIRAQSAQNLHNNSPIVLVHGLFGSLDNLGVLARDLVTDHD
                     IIQVDMRNHGLSPRDPVMDYPAMAQDLLDTLDAQQIEKATFIGHSMGGKAVMALTALA
                     PDRIDRLVAIDIAPVDYHVRRHDRIFAAINAVSESDATSRQQAAGIMRQHLNKEGVIQ
                     FLLKSWAEGEWRFNVPVLWEQYPHIVGWETIPPWEHPALFIPGGNSPYVTEAYRDALL
                     AQFPLARAHVIAGAGHWVHAEKPEAVLRAIRRYLHDKR"
     gene            9809..10351
                     /gene="seqA"
                     /locus_tag="OQP62_002157"
     CDS             9809..10351
                     /gene="seqA"
                     /locus_tag="OQP62_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation negative regulator SeqA"
                     /protein_id="HCS1721704.1"
                     /translation="MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSATTQPTAS
                     AVKGTPAAQPVAEAKPVNPVKDKVRAMRELLLSDEYAEQKKAVNRFMLILTTLYSLDH
                     HAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIE
                     HIMQSMQFPAELIEKVCGTI"
     gene            10376..12016
                     /gene="pgm"
                     /locus_tag="OQP62_002158"
     CDS             10376..12016
                     /gene="pgm"
                     /locus_tag="OQP62_002158"
                     /EC_number="5.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-glucose phosphate-specific
                     phosphoglucomutase"
                     /protein_id="HCS1721705.1"
                     /translation="MAIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGT
                     SGHRGSAGRHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVL
                     AANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPP
                     NGGPADTNVTKVVEDRANALLADGLQGVKRISLDAAMASGHVKAVDLVQPFVEGLADI
                     VDMAAIQKAGLTLGVDPLGGSGIEYWKRIAEHYKLNLTLVNDQVDQTFRFMHLDKDGA
                     IRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQ
                     HRPLWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEES
                     AGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAARFGAPSYNRLQA
                     AATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARP
                     SGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA"
     gene            complement(12131..12616)
                     /locus_tag="OQP62_002159"
     CDS             complement(12131..12616)
                     /locus_tag="OQP62_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HCS1721706.1"
                     /translation="MSNPEREVTDIAEILAILSKHEVCRIGFNDNLCPYVVPVNFGYE
                     YQNGRWIFYFHGARTGKKMRLLRKNPAVCIEMDGDHALLRADDPCDYSYAYTSVFATG
                     LASILQTREEMRHGLDVIMRQTDPGKTFSYREDMMKAVCVVRIECDALTCRRHLATQS
                     E"
     gene            complement(12681..14000)
                     /gene="potE"
                     /locus_tag="OQP62_002160"
     CDS             complement(12681..14000)
                     /gene="potE"
                     /locus_tag="OQP62_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine-ornithine antiporter"
                     /protein_id="HCS1721707.1"
                     /translation="MSKPKSNKMGVVQLTILTMVNMMGSGIIMLPTKLSEVGTISIIS
                     WLVTAVGSMALAWAFAKCGMFSRKSGGMGGYAEYAFGKSGNFMANYTYGVSLLIANVA
                     IAISAVGYGTELFGAALTPLQIGLATIAVLWVCTIANFGGARITGQISSVTVWGVIIP
                     VVGLCIIGWFWFSPSMYVASWNPHHVPFFSAVGSSIAMTLWAFLGLESACANADVVEN
                     PEKNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMDLANSTAPFGLAFAQMFTPAVGKV
                     IMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKVFSRVTKVDAPVQGMLIIVIIQT
                     GLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKMANVPSSKAKVANFVA
                     FVGAMYSFYALYSSGEEAMLYGSIVTFLGWTLYGLVSPRFELKNKHG"
     gene            complement(13997..16065)
                     /locus_tag="OQP62_002161"
                     /pseudo
     CDS             complement(13997..16065)
                     /locus_tag="OQP62_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459686.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase"
     gene            complement(16448..16549)
                     /locus_tag="OQP62_002162"
                     /pseudo
     CDS             complement(16448..16549)
                     /locus_tag="OQP62_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001312672.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2618 domain-containing protein"
BASE COUNT         4066 a         4371 c         4458 g         3745 t
ORIGIN      
        1 atactggtta cagaaagaga ttgataattc gcatcgcgaa aaatagtcta tttaacgtag
       61 taaatgaggt ttctcagcgc tactttttat ttttattttt tcgctgttcg cttttgtcgg
      121 cagcaattta tacgtcaaag aggattaact tatgcgtacg tttagtggca aacgtagtac
      181 gctggctctg gctatcgccg gtatcacagc aatgtcgggg tggatcgttg ttccgcaggc
      241 gcaagcctcc ggctttttcg acgactccac gttaacgggc ggcatctatt attggcagcg
      301 tgaacgcgat cgcaaagatg tgaccgacgg cgacaaatat aaaactaacc tttctcatgc
      361 gacctggaac gctaacctgg attttcagtc tggttacgct gcggatatgt tcggtctgga
      421 tatcgcggcg tttaccgcga ttgaaatggc agaaaacggc gacagcggtc atccaaacga
      481 aattgccttc tcgaaaaaga ataaaggcta cgacgaagac tattccggcg ataagagcgg
      541 tatcagtctt tataaagccg ccgcgaaatt taaatatggc ccggtctggg cgcgcgccgg
      601 ttatattcag cctaccggtc agacgctgtt agcgccgcac tggagtttta tgccgggtac
      661 ctatcagggt gcggaagccg gcgccagttt tgactatggc gatgcgggcg cgttaagttt
      721 ttcctacatg tggactaacg aatataaagc gccgtggcat accgaaatgg ataagtttta
      781 tcaggcggat aaaaaaacca atgtagacta tctccactcc atcggcgcga agtacgactt
      841 caaaaatgat ctggtgctgg aagcggcgtt tggtcagtcc gaaggctatg tcgatcaata
      901 tttcgcaaag gccagctata aatttgattt aggcggcaat ccgttcacca ccagttacca
      961 gttctacggc gcgcgcgaca aagtagacga tcgcagcgtg aatgacattt acgacggtac
     1021 ggcctggctg caggcgttga ccttcggcta caaagtcgcg gaagtggttg acctgcgtct
     1081 ggagggcacc tgggtgaaag cggacggtca gcagggctat tttctgcaac gtatgacgcc
     1141 aacctacgcc tcttcaaacg gtcgtctgga tatctggtgg gataaccgct ccgactttaa
     1201 cgctaacggt gaaaaggcgg ttttcttcgg cgcgatgtat gacctgaaaa actggaatct
     1261 gccgggctgg gctgtgggcg cgtcttacgt ttacgcctgg gatgctaaac cggcaacctg
     1321 gcaaagtaac ccggatgctt actacgacaa aaaccgcact atcgaagagt cctcatacag
     1381 tctggatgcg gtctataccc tgcaggaggg gcgtgccaaa ggcaccatgt tcaaactgca
     1441 cttcaccgaa tatgacaacc actccaatat tccaagctgg ggcggtggtt acggcaacat
     1501 cttccaggat gaacgtgacg tgaaatttat cgttattgcg ccattcacta ttttctgatg
     1561 tcagatgcgg caggctgccg gtctgccgcg ctgttgagga acgacctatg aaaaaaattt
     1621 tactcatcgc cagcatgacc gccggtttga cggcctgcgc gtcatcaccc gcgccggaag
     1681 aagatagtcg gctgaaagag gcgtacagcg cctgtatcaa taccgcacag ggctcgcctg
     1741 agaagataga ggcctgccaa agcgtactga atgtccttaa aaaagagcgc aaacatcagc
     1801 aatttgctaa cgaagaaagc gtgcgggtac tggactatca gcagtgcatt caggcgacgc
     1861 gcacgggtaa cgatcaggcg gtcaaggctg actgcgataa ggtctggcag gaaattcgca
     1921 gtcataataa cgtgcaataa aaccctgcct tgccacccac gggcgaatgt tttccgcctg
     1981 tggttttttc aggctttatt ttctgccgcg atatagccgc gactcagacg tacaaacagc
     2041 atcgccgtcg cggcaagtcc acataacgct gcgcacatca gccaccagcc gggcgagctt
     2101 ttatcgccgg ttaactttac cagcgcggta gagatggccg gcgtcaggcc gccaaaaatt
     2161 gccgtcgcca ggctaaaggc cagcgagaaa ccaacggtac gcacatagac tggcatcact
     2221 tcggttaacg ccgcgaccat tgcgccgtta tacatgccaa aaaagaaaga gaaccacagc
     2281 agtaccagcg tcatgcgggt aaagtcgggc gcggcggtca gccactgcat gacgggccag
     2341 gtggtgatca gcgccagcaa cgtaatgccc attaacacgg cgcgacggcc aatccggtcg
     2401 gaaatcgcgc cgccaatggg taaccagata aaattggaca cccccactaa catggtgacg
     2461 atcaaactgt cccgcgcgct gagattaagc acggttctgc cataggtcgg cgtataaacg
     2521 gtgataaaat aaaacgttgt ggtggtcatc gccaccagca gcgttccggc cgtaataatg
     2581 cgccagtttt tggcgatagt tgcaaaaatt tccctagtgt cggggcgatg cttgcgttgt
     2641 aaaaacgctt ctgtttcttg taatgaacga cgtaaaacaa aaatcagcgg aatgatcata
     2701 cagccgataa agaacggaat tcgccagccc cactccgata tcgcgtcgtg tcccagcgtg
     2761 atattcaggc tataaccaat caacgcggcg acaacgatcg caacctgctg actggcggat
     2821 tgccagctgg tataaaaccc tttattgcct ggcgttgcga tttcggacag atagaccgag
     2881 acgccgccta actcaacgcc cgcagaaaat ccttgtaata accggcccaa caacaccaac
     2941 gcaggcgctg ccaggccgat cgtctggtag ccggggacga gggcgatgag caacgtaccg
     3001 cagcccataa tcgccagcgt caccatcagc cctttacgac gtccgattct gtcaatatag
     3061 gcgccaagca caatcgcgcc gacggggcgc attaaaaaac cggagccaaa gacggcaaag
     3121 gtcaacatta atgaggcaaa ttcgctttcc gccggaaaaa acgttctggc gatataggtg
     3181 gcgtaaaatc cgaacaagaa aaaatcaaac tgttcaagga aattgccgct tgtcacgcgc
     3241 agtattgcgc cgaacgtgcc ggcgcgcgat gttgcaggtg tgtgttgtgc catagggttt
     3301 gctctccact gtctttattg ttttataggt aagatgttgc gggtcagttg cctgtatccc
     3361 ccgcatgttt tccgcgtcgc ttctcaactg cccatttgag taaggccgcg cagcggaaaa
     3421 atccgtgggc gaattttccg tagggaaggg tgagaaagag cgccatcacc acgcctaaat
     3481 ggagcgccag cagtatgccc attccgctgg tgtctctgcc tgccagcagc gccagcccgg
     3541 taagactggt taagaacagc agcagaataa agccgcgatc catgggtttc tggcgcgcat
     3601 cgctatgtaa cggcgaccgc cgcagattga gccacagtag cccggccggg ccgataagca
     3661 gaccgatacc gcccagcgtg ccgagcatga ccggcaggct aaagaacggg tagggcgctt
     3721 cccaaccggc gacgtagtga tagcccgtcg ccacgaccgt ggcggcaaaa cagagcataa
     3781 aaccgtaaaa ggtaaagtga tgaaagcgac ggcgcagcag cgtgaacgca tcgtccgctt
     3841 cgttacagcc tttgccgtga ccgccgtcga gatatttcag cgttaacgca ttgtgcgacg
     3901 cttccgcaat ctccgccgaa cgcggtacac ccggcgagat ctcacgccag aagctgatta
     3961 cgcccgccat aagcaaaccg attgccagca caaaaactga gccaaacatc catgccagca
     4021 ggctatgcgg aaaaatttga tagaagtcac cggccagcgg cggatgaatc agcgaccctt
     4081 tcagcgccat cgccagtaat aaaaagagcg tcagaccgac tatcagcgcc agcgcgacgg
     4141 tgatccccgc ccgacggtat aacgcgccaa aagcggcggg ctgggcatac tgttgatacg
     4201 tctccaggcg ggcttgcgcc atcgctttcg gcacgttaat ggcaaattca tggggcggcg
     4261 cgtactggca cgcgtgcagg caggcgccgc agttatgaca taaattcgcc agataatgaa
     4321 tatcggcttt accgaattcg agccgctggg tcatcgccgg aaataccgcg caaaaacctt
     4381 cgcagtagcg acacgcgtta cacacttgca tgacgcgttc gacctcggct tccggttcgg
     4441 taagcacggt ggcctcaatg attaattttt caagctgttt catgctgcgc ctccttgtgc
     4501 gccgcgcgag cggcttctat tcccgcaatg cggccaaagg ttgtgccgat agacatgcct
     4561 acgcctgcgg tatacccctt gcccagaaca tttcctgcca tcatctcgcc ggcaacaaac
     4621 aggttgcggc ttggatgacc ggcaaaatgc accgcggcac gttcattgac tttcaggccc
     4681 aggtaggtaa acgtgatgcc gggtcgcagc gcataaccgt agtagggcgg cgcatcaagc
     4741 gggcgcgccc agtgggtttt cgccggcgtc aggtttttgg tggcgcagtc atcaagcaag
     4801 gtatgatcaa aatgaccggg ctggcaggcc tggttatact gcgtgacggt atgggtaaat
     4861 ttttccgcgt ccagccccaa ctggcaggcc agttcagcca gcgtattggc ctgcgcgcca
     4921 ggaaaaaccg gcggcataaa gtggccaatg gctttgctgt caataatcga atagccaatt
     4981 tgtcctggct gttgagccac cagccgcccc caaatggcgt aacgcttcgg ccagaaatct
     5041 tcgccttcat cataaaaacg ctcggcgtcg cgattcacga caatacccag cgatacgcaa
     5101 tccacgcgag tacaaatacc gccgtcgtac agcggcgccc tggcatcaat cgctacgcag
     5161 tgcgactggg acggatcgcc aatgatatcc gcgccggcat ccatcataaa tttgagtaat
     5221 acgccctggt taaaacgcgt gccgcgaatc aggaaattat ccgcgggcca ttcgccgcgg
     5281 gcgttttctc cccaggcctc ccgcagccat tcacggtttg attcgaaacc gccagccgct
     5341 aatacgcagg ctttggcggt aatacgttcg ctacccgcca gcgccgccac gaattcgccg
     5401 tcatgaagtt caagcgcgtg aaccggcgtg ttatagcgaa tctgtacgcc cagccgttcg
     5461 gcgctacggt aataggcatt gacgagcgct ttcccgccgc ccataaaaaa cgcattggtg
     5521 cgcgcaacgt ggagcgcccc agatagtggc ggttgaaagt taacgccatg tttgcgcatc
     5581 cagtcgcggc attgcgaaga ggtgcgaatg accagccgcg ccagcgcctc gttggtgttg
     5641 ccgtcggtga ctcgccacag atcctgccag aattcctctt caggatagct ttccaccagc
     5701 acatcctgcg gcgcatcatg catacagcgc aggtttcgtg tgtgctgaga atttccgccg
     5761 cgccattctc gcggggcagc ctccagcagc agaaccgatg cgcccgcttc ccgtgcggtc
     5821 agggcggcgc ataatgcggc attgcctccg cctatcacca gtacatcaac catcttatac
     5881 tcccgtacca tttaactatt tgttaaattt gtaattgaaa tgtatacgga taaataagcg
     5941 gcgcgctatc aggtagcgct aaacaggggt ttagtaagcg taaagggttg cgcctggcca
     6001 ttcaccggcg tcgactaact gacgcataac tttggtaagg actactctgg cggcaaggcc
     6061 ggcgggcgtc agttcatcat ccgacaggct gactaaaaaa ttggggcggc tgagtaccgg
     6121 attatggacg ccgatcacgc gtagcgcgtc gttatccaga tgagaaatcg ccgcgccggg
     6181 ctgcaacgtg gcgccaagac cgtcgcgcac ggcgcgcatc aacaacgcca ggccgtcaat
     6241 ttccgcgacg atttcaacat taagcgcatg ttccttgcag acagcgtcca gcctgccgcg
     6301 cagcccatgt ccctggcttg gcataatgag cggaatgcct gccagttgtt caggtgtgat
     6361 cgggttatca ggaagcgccg ccagcagggc atgggagcca atcagaaaaa gctgttcttc
     6421 aaggatcggt ctggcgctcc agcgcaggat tttatctttt tgaaagacaa cggctaaatc
     6481 aatctggcgg gtattgatca ttctttccag attaccggac aagctttcca ccacatgcag
     6541 tcggacatcg gcatagtttt cctgcatggc atggataaac ggtataccca gtatggaggc
     6601 ggtactgggg gccattccta cgctcacatg accggaaagg cgcgcttctc tggcggcgag
     6661 aatcgcgtcg tcggcatgac gcagggcgag ttgcgcctgt gaataaaagg ccagcccggc
     6721 gttggttggc gttacgccgc gcgaggtgcg ctgcagcaga cggatggcga gctcgttttc
     6781 cagacgggac atctgttgac tcaatgctga aacgccaata tcaagatcct gtgcggcgct
     6841 gcccatactg ccggtttcaa taatacgcac gaaatagcgt aactggcgaa gctccattcc
     6901 tgctctcctg agatgcgata gcgtttttta cattaaatca acatcaagcg gcaggaaaga
     6961 ggaggatata aaaaagccaa ccgggcggtt ggctcttcga aagatttaca cttatttagt
     7021 cgcgtcatcg tgcgcgtgct cgtcttcgcg gcagtcgcct tcagcgcagt ggccgtaaag
     7081 atagaggctg tgattagtta aacgaatacc gtgtttcgcc gcaatttcac gctggcgcgc
     7141 ttcaatagag tcatcactaa attcaatcac ttttccgcag tcaaggcaga taagatggtc
     7201 gtgatgatgc tgttgcgtca gttcaaaaac ggatttaccg ccttcaaagt tatggcgggt
     7261 cacgataccg gcatcgtcaa actggttcag cacacggtat acggttgcca gaccgatttc
     7321 ttcacccatg tcgatcaggc gtttgtataa atcttccgca ctgacgtgat ggttatctgg
     7381 ttcctgaaga acttccagaa tttttaaacg aggaagcgtt actttcaggc cagccttctt
     7441 taatgcggta ttgttgtcag tcatgcggaa tctgtcctgt tgctaaacga ttcacttcat
     7501 tagagaagtg acagaaattg cactcaagat aatgcgtatc attataggac tgccatgccg
     7561 aaatgaaaac cgcaagtctc tcgcagatgt taataaaact gtggttttgc ctgcaaattc
     7621 tggcgccacc tgattacacc cggacattgt acagggatgg gtgcgaaagt tacaaatttg
     7681 tagcaattat tttgattggt cttgtctatt gatgcggcgc agatataacg ctgcgccgca
     7741 taagattagg cgttgaggat gtcgccgagg tgcaattcag ccgaaacttg cttaacccat
     7801 ttttcaacac gctcggcggt cagttcaggc tgacggtctt cgtcaatcgc caggccgaca
     7861 aaatgatcgt cgtcagccag acctttagag gcttcaaaat gatagcctgc ggttggccag
     7921 tgacccacaa tcgtggcgcc gcgcggctca ataatgtcgc gaatcgtgcc cagcgcatca
     7981 cagaagtatt ccgcgtagtc ttcctgatcg ccacagccaa acagcgccac cagcttaccg
     8041 ttaaagtcaa tctcttcgag agtcgggaag aagtcatccc agtcacattg cgcttcgcca
     8101 tagtaccagg ttgggatgcc cagcagcaga atgtcatacc cttctaggtc ttctttactg
     8161 ctttttgcaa tgtcatgcac atcggcaacg tctttaccaa gctgtttttg aatcattttt
     8221 gcgatatttt cggtattacc ggtgtcgctg ccgaaaaaga tgccagtgat tgccatgagt
     8281 aaaataacct cttgaaactt attgaaatgg tggtggcgaa ttgcccacgg ataagggcaa
     8341 tcatagcaga acaggcagat atgcggaaac agcaatcacg cgggactgca cgctctgcta
     8401 cacgaaatat gaaacaaaac ttattttcag actaaaccct ggccgcgcag cgccataagc
     8461 tgcttcatta atatttcttc aatgagctcg ctgcggctaa tgttgcgcgc ttcggccagc
     8521 tcattcagcg cgtcaaccgc ttgtgcgttg agttttaatt cgacacgctt gaggccacga
     8581 actttgtcgc gttttaactg gttgcgcttg ttgatgcgta actgttcatc gcgcgaaagc
     8641 ggattcgttt taggtcgtcc cgggcgacgc tcgtgcgcga acagatctaa tgtcgtacgg
     8701 tccgtttgtt ctttggccat gattttggtg acttcggggg aaacaatcag ccaggcttat
     8761 gcccggatgg atagcgcgcc atcatacatc agcgaggaag cgacgccaac gctcgcgcgc
     8821 gtaatcgcgc acaggcgatg agtttttaat cagttagcgt ttatcgtgca gataacggcg
     8881 gatggcgcgc agaaccgcct ctggtttttc ggcatgtacc cagtggcccg cgccggcgat
     8941 cacatgcgcg cgcgccaaag ggaattgcgc cagcagcgcg tcgcggtacg cttcggtcac
     9001 gtacggcgag ttaccgcctg gaataaacag cgccggatgt tcccagggcg gaatggtttc
     9061 ccagccgacg atatgcggat actgctccca taataccgga acattaaaac gccattcgcc
     9121 ttcagcccag gattttaaca gaaactggat cacgccttct ttgttgaggt gctggcgcat
     9181 aatccctgcc gcctgttggc gggatgtcgc gtcggattcg ctgacggcgt taatggccgc
     9241 gaaaatgcga tcgtggcggc gaacgtgata atccacgggg gcgatatcaa tcgcgaccag
     9301 acgatcgatg cgatcgggcg ccagcgccgt cagcgccatt accgcttttc cacccatgga
     9361 atgaccaata aacgtcgctt tttcaatctg ctgcgcgtca agcgtatcca gaagatcctg
     9421 ggccattgcc ggataatcca tgaccggatc gcgcggcgat aaaccatgat tgcgcatatc
     9481 gacctgaata atgtcgtgat cggtcaccag atcgcgcgcc agtacgccga ggttgtccag
     9541 gctgccaaac aggccatgaa cgagaacgat gggggaatta ttgtgcaggt tttgtgcaga
     9601 ttgcgctcgg atgtttaatt tcatggcaaa gttctttttt tcgctctgtc gggttagggt
     9661 attatgttga ccattctgcc actgggctgc aacctctaag gtttactccg agtttttttg
     9721 tcagccgggc ttaacgctat ccgctgttgg gatttgttcc tataatccca atgacttgta
     9781 ttcagcaaag acatcgcact ggattaagat gaaaacgatt gaagttgatg atgaactcta
     9841 tagctatatt gccagccaca ccaagcatat cggcgagagc gcatccgaca ttttacggcg
     9901 tatgttgaag ttttccgcca cgacacagcc aacggcttca gcggtgaagg ggacgcctgc
     9961 ggcgcaaccc gttgccgaag cgaaaccggt taacccggta aaagacaaag ttcgcgcgat
    10021 gcgtgagctg ttgttgtctg atgaatatgc cgagcagaaa aaagcggtca accgctttat
    10081 gctgattctg actacactct attcactgga tcaccacgcg tttgcggagg cgacggagtc
    10141 gttgcatggc cgcacgcgcg tctattttgc ggcggatgaa caaacgctgc tgaaaaatgg
    10201 gaatcaaact aaacctaagc acgttcccgg cacgccgtac tgggtgatca ccaacaccaa
    10261 caccggccgt aaatgcagca tgatcgaaca catcatgcag tcaatgcaat tcccggcgga
    10321 attgattgaa aaggtttgcg gaacaattta atccttgcat tagaaggacc aggcaatggc
    10381 aatccacaac cgcgcaggac aacccgcgca acagagtgat ttgattaacg tcgcccaact
    10441 gacagcgcag tattatgtac tgaaaccgga ggcagggaat gcagaacatg ccgtgaaatt
    10501 tggcacttcc ggccatcgcg gcagcgcagg tcgtcacagt ttcaacgaac cgcatattct
    10561 ggcgatcgcc caggcgattg ctgaagagcg ggcgaaaaat ggcattaccg gcccctgcta
    10621 tgtggggaaa gacacccatg cgctctcgga accggccttc atttccgtgc tggaagtgct
    10681 ggcggcaaac ggcgtagacg ttatcgtgca ggaaaataat ggcttcacgc caacgcctgc
    10741 cgtgtcaaat gctatcctgg tccataacaa aaaaggcggc ccgctggcag atggtattgt
    10801 cattacaccg tcgcacaacc cgccggaaga tggcggtatt aaatataatc cgcccaatgg
    10861 cggcccggcg gataccaacg tcactaaagt ggtagaagat cgcgccaatg cgctgctggc
    10921 ggatggcctg caaggcgtta agcgcatctc tctggatgcg gcaatggcct cgggtcacgt
    10981 taaagcggta gatctggtac agccgtttgt cgaagggctg gcggatatcg ttgatatggc
    11041 ggcgattcag aaagccggtc tgacgctggg cgttgatccg ctgggcggct ctggtattga
    11101 atactggaaa cgtatcgctg agcattacaa gcttaacctg acgttagtca acgatcaggt
    11161 tgatcaaacc ttccgcttta tgcaccttga taaagatggc gcgatccgca tggattgctc
    11221 ctccgaatgt gcgatggcgg gtttgctggc gctgcgtgac aagtttgacc tggccttcgc
    11281 caacgacccg gactacgacc gtcatggcat cgtgacgcct gcagggctga tgaacccgaa
    11341 ccattatctg gcggtcgcca ttaactatct gttccagcat cgtccgctgt ggggcaaaga
    11401 cgtggctgtc ggtaaaacgc tggtctcttc cgcgatgatt gaccgcgtgg tgaatgattt
    11461 gggacgcaag ctggtagaag tgccggttgg cttcaaatgg tttgttgacg gtttgttcga
    11521 cggcagcttt ggtttcggcg gggaagagag cgcgggcgct tcgttcctgc gtttcgacgg
    11581 tacgccgtgg tctaccgata aagacgggat catcatgtgc ctgctggcgg cggaaatcac
    11641 cgccgttacc gggaaaaacc cgcaagagca ttacaatgaa ctggcagcgc gttttggcgc
    11701 gccgagctat aaccgtctgc aggcggcagc gacctcggcc cagaaagcgg cattgtctaa
    11761 actgtctccg gaaatggtga gcgccagcac gctggcaggc gacccgatta ccgcgcgtct
    11821 taccgcagcg ccgggtaatg gcgcatcgat tggcggcctg aaggtaatga ccgacaacgg
    11881 ctggttcgcc gcgcgtccat ccggtacgga agacgcttac aagatctatt gcgaaagctt
    11941 cctgggggaa gaacatcgca agcagattga gaaagaagcc gttgaaatcg ttagcgaagt
    12001 attgaaaaac gcctgatggg cgatatggaa gaaaaaggag ccttacggct ccttttttgt
    12061 attaacggcg ctgcgcttat caggcctgta aaccgcctcc aggccggata aggcgcttgt
    12121 gatatctgac ttattcgctc tgagtcgcca gatgtcggcg gcaggtgagg gcgtcgcatt
    12181 cgatacgcac cacgcaaacc gctttcatca tatcttcccg ataactgaag gtttttcccg
    12241 gatcggtctg gcgcataatg acgtccaggc cgtggcgcat ctcctcgcgc gtttgcaata
    12301 tcgatgccag tccggtggcg aaaacgctgg tgtaggcgta gctataatca caggggtcat
    12361 cggcacgtag taatgcatgg tcgccgtcca tttcaatgca tactgccggg ttcttacgta
    12421 acagacgcat ctttttcccg gtgcgtgcgc cgtgaaaata aaatatccag cgtccgttct
    12481 gatactcgta gccaaaattt acggggacaa catacggaca gagattgtcg ttaaacccta
    12541 tccgacacac ttcgtgttta ctgagaatag ccagtatttc tgctatatca gtgacttccc
    12601 gttctggatt actcatttct attatcttat tcaaagagtg aaaatgcccg ggctatcgtt
    12661 accgcagccc gggcgcgcca tcagccgtgt ttatttttca attcaaaacg cggtgagacc
    12721 aggccgtata acgtccagcc gaggaaggtc acaattgagc cgtacagcat ggcttcttca
    12781 ccggaggaat atagcgcgta gaagctatac atggcgccaa cgaaggccac gaagttagcg
    12841 actttcgctt ttgatgatgg cacattcgcc attttctgaa tgataaccag cgcggccatc
    12901 gacagaatat acggaataat gttcgtcacc accgccaggt taaccaggac gttaaactga
    12961 ctattcagcg acgggctaat ggtcatcagc gacaggccag tctgaataat cacaataatc
    13021 agcatcccct gtaccggcgc gtcgactttc gttacacgag agaagacttt cgggaaatag
    13081 ccttcgtcag cggaggattt aaagacctgg gcgatagtga actgccagcc cagcagcgag
    13141 ccgcagcagg acattaccat cagcgccatg atcactttac ctaccgcagg cgtgaacatc
    13201 tgtgcaaacg ccagaccaaa cggcgccgtg gagttcgcca gatccatgtt cggcacaatc
    13261 ccggcaatca cgttagtcga aacgatatag atgaccgccg cgcccagcgt accgcccagt
    13321 accgcgatgg ggacgttctt ttccggattc tcgaccacgt ctgcgttagc gcaggcggat
    13381 tccagtccaa gaaatgccca caacgtcatg gcgatggaag agccgaccgc gctaaagaac
    13441 ggaacatggt gcgggttcca tgacgctacg tacatgctgg ggctaaacca gaaccagcca
    13501 atgatgcaca ggccgacaac cggaatgatg acgccccaaa cggtaacgct actgatctgt
    13561 ccggtaatac gcgcgccgcc aaagtttgcg atggtacaaa cccacaatac ggcgatagtc
    13621 gccagaccga tctggagcgg cgtcagcgcg gcgccgaaca gttcggtacc atagccgaca
    13681 gcggagatgg cgatagccac gttggcgatc agcagcgaga cgccgtaggt atagttcgcc
    13741 ataaagttgc cggatttacc gaaggcatat tcggcgtaac cgcccatgcc gccggattta
    13801 cggctaaaca taccgcattt cgcaaacgcc caggccagcg ccatcgagcc gacggcggtg
    13861 accagccagg agataatgga tatcgtgccg acttcagaca gtttggtcgg tagcatgatg
    13921 atcccggagc ccatcatgtt gaccatagtc agaattgtga gctgcacgac acccatttta
    13981 ttggatttag gtttactcat aatttttcct ccttcagcag ggagcgctgc gcgtcacgag
    14041 gtttaatgac gtagcaccag acctgcttac ggccgtcgtg ttcttcgata taaacgccct
    14101 gcagttcagg cgcaaagccc ggcagcaggt tgatcccttc ttccagggcg ctgaagtaac
    14161 gcaggacaga accgccccag atttcacccg gaactacaca cagcactccc ggcgggtaag
    14221 gcagagcgcc ttcagccgcg atacgacctt ccgcttccgg caggcgaacc agttcgacct
    14281 cgccgcgcag ataggcatag ttggcctctt gcgggttcat actgactttc gggaaatgcg
    14341 atttacggaa catctctttt tgcagctgtt tcacgttgtg ccgcgcatag agatcgtgca
    14401 tctcctggca aagctgacgc agggtatagc cggcataacg cgcttcatgc tgtttgtaga
    14461 tggacggtaa tacttccgct aacggcgcat cagcttccag cagtttttcg aaacgagcca
    14521 gcagagcgac aagctgttgt aacttcgcca tgtcttctgc cggcgtcagc aggaacagaa
    14581 tggagttgag gtcgcatttt tccggcacaa cgccgttctc gcgcaggaag ttggcgagga
    14641 tcgtggcagg aacgccaaag tcttcatatt cgccgctcgc tgcattaatg cccggtgtgg
    14701 tgagcagcag tttgcaaggg tcgacaaagt actgatgttc ggcatagcct tcaaacgcat
    14761 gccagtgttc tcccggaacg aagtggaaga agcgcagatc gctggcgatc tctgacgttg
    14821 ggtatgactg ccacggctta ccatcaatca gttccggtac gaacggacgg atgtggtgac
    14881 agttttcgag gatcaattta cgggcatcga tgccgttaac tacgcaatcc atccacatat
    14941 tgcgaccgct gacgccttcg tgcattttgg cgttaacgtc cagcgcggcg aacagcggat
    15001 agaacgggct ggtggaggcg tgcatcataa aggcgttgtt catgcgctta tgcggaacgt
    15061 agcgcgattg ccctttgata tggctatctt ttttatggat ctgcgaggtc tgggagaaac
    15121 cggcttgttg tttgtgaacg gactgcgtca ccagaatacc cggatcgttt tcgttcagtt
    15181 ccagcagcag cggcgaacaa tcggccatca tcggaataaa ttgttcatag ccgacccagg
    15241 cggagtcaaa caggatgtag tcgcacagat gaccaatttt atcgacgacc tgacaggcgt
    15301 tataaatggt accgtcgtag gtgcctaagt accgtcgtag gtgcctaact ggatgacggc
    15361 cagacggaat ggacgtgctt cgtgggcacg ctgcggcgcg acttcgctaa tcagctcgcg
    15421 caggtaatct tcttcgaagc agtgagcgtc gatcccgccg ataaaaccat acggttacgc
    15481 gcggtttcca gataaactgg cgttgcgccc gcctgcaata atgcgccgtg gtggttagat
    15541 ttgtggttgt tacggtcaaa cagtaccaga tcgcccggcg ttaacagcgc gttgagtacg
    15601 actttgttag aggaggaggt cccgttcagc acaaagtagg tcttatcggc gttaaagact
    15661 ttcgccgccc tgatgccccg ggcagtcaaa tgcgctgttg ccctggttga cataatccac
    15721 cagcgcgcgg aaaaacggcg gacgtaactg cgtttcgtag tggcttgctg cggtttccaa
    15781 ctggcgacca tagaaggcag tacgggattc attatattcg aatacaccag agatacgcgg
    15841 caaatactca ggcggtacgc gtccttcgtc atgagtcgcg acaaacacgg gaataccgta
    15901 acccgttgcg tcgatttcat cgagttttcc gtgttcaatg tcgtcgatgg ataacacgga
    15961 tgcagccacg tcgatgaaac gactctcatc aacatttaca atattacggt gtgtagaaaa
    16021 acaatccggg caatgacggc taacggcaat ttttaattct gacatttttc atctctttat
    16081 ttcaggtaat agcaggccct caatttctcg catgagaaac tgattcttcc ggaaaaaatc
    16141 aaagctatcc cgctgataaa aaaatcagta aattagcttt attttagatg taataaatcc
    16201 caacccgtcc ggttgcagga aattcaggat ttaaggagtt gagtactacg atatacaggc
    16261 agaaaccgcg ataactaaaa ttgcgctgag tcggaatttc ttctgtcaaa ccacatagtt
    16321 agctggctgg gcgtaaagga attaccgtac tgtcgctttt aacaattcga gttatttagg
    16381 caatagacct gaatgacata agggtcggaa agacctgtat gctgaagtac ccgtagcaga
    16441 aaaaataccg ggcattaaag aaatgaaagt cgaaactatt acggtgggca aacatcataa
    16501 tatgcgttgt ccgccttata tggggcataa aacgattatt attttccatt ttgaggtcct
    16561 ttcattgatt tattgaaagc atggatattt tatccaggga gcgccagcaa tctgtgaacc
    16621 agatcaacaa aaaacgatca
//
LOCUS       DAJVSD010000082        16520 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.082, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000082 DAJVSD010000000
VERSION     DAJVSD010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 16520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16520
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.082"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(62..880)
                     /gene="cof"
                     /locus_tag="OQP62_002163"
     CDS             complement(62..880)
                     /gene="cof"
                     /locus_tag="OQP62_002163"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HMP-PP phosphatase"
                     /protein_id="HCS1721708.1"
                     /translation="MARLAAFDMDGTLLMPDHHLGRETIATLSRLRERDITLTFATGR
                     HVLEMRHILGTLSLDAYLITGNGTRIHSLEGDVLHRQDLDPQVADTVMHHAWDTRASM
                     HVFNDNGWFTGQEIPALLQAHVYSGFRYQVIDIKSIPAHQVTKICFCGDHDDLIRLRI
                     QLNEALEERAHLCFSAVDCLEVLPLGCNKGSALAVLSNHLGLSLADCMAFGDAMNDRE
                     MLGSVGRGLIMGNAMPQLIAALPHLSVIGHCGNQAVSHFLTHWLDNPHLPYSPE"
     gene            980..2680
                     /locus_tag="OQP62_002164"
     CDS             980..2680
                     /locus_tag="OQP62_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgrR family transcriptional regulator"
                     /protein_id="HCS1721709.1"
                     /translation="MRLLNRLNQYQRLWQPSAGETQHVTVSELAERCFCSERHLRTLL
                     RQAQQAGWLRWEAQSGRGKRGRLQFLVTPESLRTAMMEQALEKGQQLNVLELAQLAPG
                     ELRAMLQPFMGGQWQNDTPTLRIPYYRPLDPLQPGFLPGRAEQHLAGQVFSGLTRFDR
                     DSQYPCGDLAHHWKVSADGLRWDFYIRSTLHWHNGDAVDTAQLHERLERLLTLPALSK
                     LFISVARIEVTHPQCLTFLLHRPDYWLAHRLASYCSGLAHPDLPLIGTGPFRLALFTP
                     ELVRLESHDHYHLSHPLLKAIEFWITPQLFAQDLGTSCRHPVQIAIGKPEELATLSQV
                     SSGISLGFCYLTLKKGSRLNVQQARRLIHIIHHTSLLKTLPVDENLIMPSQGLLPGWT
                     IPQWQDVDETPLPKKLTLAYHLPVELHTMAEQLRHYLATLGCELTLIFHNAKNWNNCP
                     ALAQADLMMGDRLIGEAPEYTLEQWLRCDQIWSHVLDAPAFSHLQATLDALQIQPNEK
                     DRRAALQQVFANLMDDATLTPLFNYHYRISAPPGVNGVRLTPRGWFEFSEAWLPPPSP
                     "
     gene            2745..3440
                     /gene="queC"
                     /locus_tag="OQP62_002165"
     CDS             2745..3440
                     /gene="queC"
                     /locus_tag="OQP62_002165"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HCS1721710.1"
                     /translation="MKRAVVVFSGGQDSTTCLAQARHQYDEVHCVTFDYGQRHRAEID
                     VARALALKLGARAHKVLDVTLLNELAVSSLTRDSIPVPDYEPNADGIPNTFVPGRNIL
                     FLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVNLGMAKDIRFETPL
                     MWIDKAETWALADYWGQLDLVREETLTCYNGIKGDGCGHCAACNLRANGLNHYLSNKA
                     AVMAAMKQKTGLR"
     gene            complement(3547..3945)
                     /gene="fadM"
                     /locus_tag="OQP62_002166"
     CDS             complement(3547..3945)
                     /gene="fadM"
                     /locus_tag="OQP62_002166"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain acyl-CoA thioesterase FadM"
                     /protein_id="HCS1721711.1"
                     /translation="MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWM
                     TARNIAFVVVNININYRRPAVLSDLLTVTSQVQQLNGKSGVLSQTITLEPEGQVVADA
                     LITFVCIDLKTQKALPLEGELREKLEQMVQ"
     gene            complement(4049..4423)
                     /locus_tag="OQP62_002167"
     CDS             complement(4049..4423)
                     /locus_tag="OQP62_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HCS1721712.1"
                     /translation="MKHGIKALLITLSLTCAGMAHSALAATPVAKNAAVETKADTPSS
                     SSAKAALPAKASDDEGTRVSINTASAEDLARVMNGVGLKKAQAIVSYREEYGPFKTVD
                     DLKQVPGMGSALVERNLAVLTL"
     gene            complement(4573..6444)
                     /gene="ppiD"
                     /locus_tag="OQP62_002168"
     CDS             complement(4573..6444)
                     /gene="ppiD"
                     /locus_tag="OQP62_002168"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCS1721713.1"
                     /translation="MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSNNYAAK
                     VNGQEISRAQFENAFNNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLD
                     QYSRELKLGISDEQVKQAIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYTQALRNQL
                     TTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYY
                     DQNKVRFMTPEQFRVSYIKLDAATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQT
                     KTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNAGLKE
                     KGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVS
                     DAASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPG
                     PNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLV
                     ELKAGKGAEAMKAAGLSFGEPKTLSRTSQDPVSQAAFALSLPTKDKPVYGVANDMQGN
                     VVLLAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ"
     gene            complement(6735..7007)
                     /gene="hupB"
                     /locus_tag="OQP62_002169"
     CDS             complement(6735..7007)
                     /gene="hupB"
                     /locus_tag="OQP62_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein HU-beta"
                     /protein_id="HCS1721714.1"
                     /translation="MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVAL
                     VGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN"
     gene            complement(7216..9570)
                     /gene="lon"
                     /locus_tag="OQP62_002170"
     CDS             complement(7216..9570)
                     /gene="lon"
                     /locus_tag="OQP62_002170"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001469947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HCS1721715.1"
                     /translation="MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAM
                     DHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISA
                     LSDNGEHFSAKAEYLDSPAIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSID
                     DPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVK
                     KQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQ
                     KLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRI
                     LEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR
                     GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNV
                     AFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLP
                     KQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLK
                     HIEINGDNLHDYLGVQRFDYGRADSENRVGQVTGLAWTEVGGDLLTIETACVPGKGKL
                     TYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGI
                     AMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFEN
                     KRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGMQVVTAK"
     gene            complement(9756..11027)
                     /gene="clpX"
                     /locus_tag="OQP62_002171"
     CDS             complement(9756..11027)
                     /gene="clpX"
                     /locus_tag="OQP62_002171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001396736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HCS1721716.1"
                     /translation="MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLC
                     NDIIREEIKEVAPHRERSALPTPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG
                     DTSNGVELGKSNILLTGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN
                     IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT
                     VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKA
                     KSDKASEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALVQILKEPKNALT
                     KQYQALFNLEGVDLEFRDEALNAIARKAMARKTGARGLRSIVEAALLDTMYDLPSMED
                     VEKVVIDESVIAGQSKPLLIYGKPEAQASGE"
     gene            complement(11279..11902)
                     /gene="clpP"
                     /locus_tag="OQP62_002172"
     CDS             complement(11279..11902)
                     /gene="clpP"
                     /locus_tag="OQP62_002172"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006809880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HCS1721717.1"
                     /translation="MSYSGERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIF
                     LTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVS
                     TICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK
                     GRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN"
     gene            complement(12149..13447)
                     /gene="tig"
                     /locus_tag="OQP62_002173"
     CDS             complement(12149..13447)
                     /gene="tig"
                     /locus_tag="OQP62_002173"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001716227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HCS1721718.1"
                     /translation="MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGF
                     RKGKVPMNIVAQRYGASVRQDVLGDLMSRNFVDAIIKEKINPAGAPNYVPGEYKVGED
                     FTYSVEFEVYPEVELTGLESIEVEKPVVEVTDADVDVMLDTLRKQQATWKEKDGAADA
                     EDRVTIDFTGSVDGEEFEGGKATDFVLAMGQGRMIPGFEDGVKGHKAGEEFTIDVTFP
                     EEYHAENLKGKAAKFVINLKKVEERELPELTEEFIKRFGVEDGSVAGLRAEVRKNMER
                     ELKGAVRNRVKSQAIEGLVKANDIDVPSALIDSEIDVLRRQAAQRFGGNEKQALELPR
                     ELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNK
                     ELMDNMRNVALEEQAVEAVLAKAKVSEKATSFNELMNQQA"
     gene            complement(13794..14111)
                     /gene="bolA"
                     /locus_tag="OQP62_002174"
     CDS             complement(13794..14111)
                     /gene="bolA"
                     /locus_tag="OQP62_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator BolA"
                     /protein_id="HCS1721719.1"
                     /translation="MMIREQIEEKLRTAFDPVFLEVVDESYRHNVPAGSESHFKVVLV
                     SDRFTGERFLNRHRMIYGTLTAELSTTVHALALHTYTLKEWEGLQDTIFASPPCRGAG
                     SIA"
     gene            14415..14993
                     /locus_tag="OQP62_002175"
     CDS             14415..14993
                     /locus_tag="OQP62_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005225436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1721720.1"
                     /translation="MLKKLLFPLVALFMLAGCATPPTTIDVAPKITLPQQDPSLMGVT
                     VSITGADQRQDQALAKVTRNNQLVTLTASRDLRFLLQEVLEKQMTARGYMIGPNGAVN
                     LQIIVNQLYADVSQGSVRYNIATKADIAIIATAANGNKMTKNYRANYSIEGAFQASNQ
                     NIADAVNSVLTDTIADMSQDTSIHDFIKQNAR"
     gene            15037..16512
                     /gene="ampG"
                     /locus_tag="OQP62_002176"
     CDS             15037..16512
                     /gene="ampG"
                     /locus_tag="OQP62_002176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="muropeptide MFS transporter AmpG"
                     /protein_id="HCS1721721.1"
                     /translation="MSSQYLRIFQQPRSAILLILGFASGLPLALTSGTLQAWMTVENI
                     DLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLAAIAAMGFLE
                     PGTQLRWMAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSG
                     GLALWLADRWLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPSPKSLEQAVVAPLRDF
                     FGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGA
                     LYGGILMQRLSLFRALLIFGILQGASNAGYWLLSITDKNMFSMGAAVFFENLCGGMGT
                     AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVVAA
                     VPGLLLLLVCRQTLEYSWQSERFIPRTQYRGTYNFALSILLAGVALLAVWVLLLTMNA
                     LDYTNFSFLPELLETAVAIAVCGIVFGGLLDYLALRKTRLL"
BASE COUNT         3671 a         4631 c         4024 g         4194 t
ORIGIN      
        1 tgggggtttt ccatagacaa aaaaagccag actgaatgtt tggcttgctg gaagagatct
       61 ctcattcggg ggaataaggt agatgcggat tgtccagcca atgcgtcaaa aagtgtgata
      121 ccgcttgatt accacaatgt ccgataaccg aaaggtgtgg cagcgcggcg ataagctgcg
      181 gcatggcatt gcccataatg agcccccgcc cgacgctgcc cagcatttcc cgatcgttca
      241 tcgcgtcgcc aaacgccatg caatctgcca gtgaaagccc taaatggttg ctcaataccg
      301 ccagcgccga tcctttattg caccccagcg gtagcacttc caggcagtcg acggcagaga
      361 aacagaggtg cgcgcgttct tccagcgcct cattgagctg aatgcgcaaa cggatcagat
      421 cgtcatgatc gccgcaaaaa cagatcttcg tcacctgatg ggccggaata ctttttatat
      481 cgataacctg ataacgaaag ccgctgtaga cgtgcgcctg gagtagcgcg gggatctcct
      541 ggcctgtaaa ccagccgttg tcattaaaca catgcatact ggctcgggta tcccaggcat
      601 ggtgcatcac cgtatcggca acctgaggat cgagatcctg acgatgcagc acgtcgcctt
      661 ccagcgagtg aattcgcgtc ccgttaccgg taataagata agcatccagt gaaagcgtcc
      721 ccagaatatg ccgcatctcc agcacgtgac gacccgtagc gaatgtcaga gtgatatcgc
      781 gttcgcgcag acgcgacagc gtggcgatcg tttctctacc caaatggtga tcgggcatta
      841 ataacgtgcc atccatatca aatgctgcca gacgggccat ctctttctcc acactgtaac
      901 gcggttaact tgttgttcag tattacctga gatatacgga agtaatagtg aacagataaa
      961 aggaagtgtt ccgggtttta tgaggctact gaatcggctt aatcaatatc aacgcctctg
     1021 gcagccttcc gccggggaaa cgcaacatgt caccgttagc gaactggccg aacgctgttt
     1081 ttgtagcgag cgccatctgc gaacgctgct gcgtcaggcc cagcaggcgg gttggctaag
     1141 atgggaggcg cagtccgggc gcgggaaacg tggacggctc cagtttctgg tcacgccgga
     1201 atcgctccgc accgccatga tggaacaggc gctggaaaaa gggcagcagc tcaacgtact
     1261 ggaactggcg cagctggcgc ctggcgagtt acgggcgatg ctccagcctt ttatgggcgg
     1321 ccaatggcaa aacgatacgc caacattgcg tattccctac tatcgtccgc ttgatccgct
     1381 gcagccgggt ttcctgccag gacgcgcgga acagcatctc gcagggcaag ttttttccgg
     1441 gttaacgcgc ttcgatcgcg atagccaata tccttgcggg gatttggcgc atcactggaa
     1501 ggtttccgcc gacggtttac gctgggattt ttatattcgc tccacgctgc actggcataa
     1561 tggcgatgcg gtggataccg cgcagttaca cgaacgcctg gaaaggctgc ttaccctacc
     1621 ggcgctaagc aaattgttta ttagcgtcgc acggatcgaa gtaacgcatc ctcagtgcct
     1681 gacctttctc cttcaccgac ctgattactg gctggcgcat cgtctggcga gctattgtag
     1741 cggtctggcg catcctgacc tgccgcttat cggcaccggt ccttttcgcc tggcgttgtt
     1801 cacgccggaa ctggtgcgtc tggaaagtca tgaccattat cacctcagcc atccgctgct
     1861 gaaagcgatt gaattctgga tcaccccgca actgtttgcc caggatctgg gcaccagttg
     1921 ccgccatccg gtgcagattg ccatcggcaa accggaagag ctggcgacgc tgagtcaggt
     1981 aagtagtggt atcagtcttg gcttttgtta tttaaccctc aaaaagggct cacggctcaa
     2041 cgtacagcag gcgcggcgtc tgatacatat tatccatcat acttcgctgc tgaaaacctt
     2101 accggtagat gagaacttga ttatgccaag tcaggggctg ctacccggct ggacaatccc
     2161 gcaatggcag gacgttgatg aaacaccatt gccgaaaaaa cttaccctgg cgtatcacct
     2221 tcccgtagag ctgcatacga tggcggaaca gcttcgacat tacctggcga cgctcggctg
     2281 tgagttaacg ttgatttttc ataatgccaa aaactggaat aactgccctg cgttggcgca
     2341 agcggatctg atgatgggcg acaggctgat cggcgaagcg ccggaatata cgctggagca
     2401 gtggctacgt tgcgatcaga tctggtcaca tgtcctggac gcgcctgcgt tttcccatct
     2461 gcaggctacg cttgacgctc tgcaaattca gcccaatgaa aaagatcgcc gcgccgcgct
     2521 acaacaagtt tttgccaacc tgatggatga cgccacactt acgccgctgt ttaattatca
     2581 ctatcgcatc agcgccccac cgggcgttaa cggcgttcga ctcacccctc gcggctggtt
     2641 tgaatttagc gaagcctggc ttccgccgcc ttcgccgtga agaagctggt cgggattatc
     2701 cgtacgcgtt accatattgg ctttcgtcat tgatcaggat aactatgaaa cgcgccgttg
     2761 ttgtatttag tggaggtcag gactccacca cttgtctggc gcaagcgcgg catcagtatg
     2821 atgaagtgca ttgtgtcacg tttgattatg gtcagcgcca ccgcgcagag attgatgttg
     2881 cgcgcgcact ggcgttaaaa cttggcgcac gcgcgcataa agtgctggat gtcactttgc
     2941 tgaacgaact ggcggtcagc agcctgacgc gggatagcat tccggtgccg gactatgaac
     3001 cgaacgctga cggtatcccc aacactttcg taccgggacg caatattctc tttctgacgc
     3061 tggcggcgat ttacgcttat caggtcaaag ccgaggcggt gatcaccggc gtttgcgaga
     3121 ccgatttttc cggctatcca gactgtcgcg atgagttcgt caaagcgctg aatcacgcgg
     3181 tgaatctggg catggcgaaa gatatccgtt tcgaaacgcc cctaatgtgg attgataaag
     3241 ctgaaacctg ggcgctggcc gattattggg gccaactgga tttagttcgc gaagagacgc
     3301 tgacctgcta taacggcatt aaaggcgatg gctgtggtca ttgcgcagcc tgtaatctgc
     3361 gcgctaacgg cctgaatcat tatctgtcga ataaagcggc ggtgatggcg gcaatgaagc
     3421 aaaaaaccgg gttaaggtga ttgttttgcc ggatggcggc gcacgcacct tatccgtgcc
     3481 tggcgatatg caccatggtc aatatcgcca ggccggacaa gttcaacgcc atcagacagc
     3541 gaggcgttat tgcaccatct gttccagctt ttcacgcaat tcgccttcca gcggcagcgc
     3601 tttttgcgtt tttaaatcaa tacaaacaaa cgtgatgagc gcatcggcca ccacctgccc
     3661 ttctggctcc agcgtaatcg tctggcttaa tacgccgctt ttaccgttaa gctgttgtac
     3721 ctggctggtc acggtcagta gatcgctcaa taccgccggg cgacggtaat ttatattgat
     3781 gtttaccacc acaaaggcaa tattgcgggc cgtcatccac tgaaagctgt cgctgttttc
     3841 cagcccatcc caacgggcct cttccagaaa ttccagatag cgggcattat taacatgttg
     3901 ataaacatca agatgatatc cacgaacttt gatttgtgtt tgcatagcgc aataacctta
     3961 cgttgttgtt ataagtaagc gacaagtaca gaggtcataa ctggtatgac ctctacagtc
     4021 tggcaaattt tggccactgt gcaagtgatt acaatgttaa aactgccaga ttacgctcca
     4081 ccagcgcgct tcccattccc ggcacctgct ttaaatcatc caccgtttta aaaggaccat
     4141 actcctcccg atagctcaca atagcctgcg cttttttcag cccaacgccg ttcatcaccc
     4201 gcgccagatc ctccgcagac gcggtattaa tgctcaccct agtaccttca tcatcgctgg
     4261 ctttagcagg taatgccgct ttggcggagg atgaagaagg cgtatccgct tttgtttcca
     4321 ccgctgcatt ttttgcgaca ggcgtcgccg ccagcgcgct atgggccatg cccgcgcagg
     4381 ttaaagaaag cgtaataagc agtgctttaa ttccgtgttt catactgttt tctccttgtt
     4441 tgttaacagt gcagccacga tagcggggcg gagaaaaacg aacaaatggc aattctcaga
     4501 aatggaaaag gccgcgaaag cggcctttgt gggatacaac gttttgcaat tttttgcgaa
     4561 gcgcctcgac gattactgct gttccagagc gtcgccgatt ttgattttcg cctctttacg
     4621 cagattgctc atcagcgcct caaagacaat ttgcgcattg ttctgcgtga tgccctgcac
     4681 catcgctttt ttctgcgctt ccggcatggc gcccgctttc acctcgtcaa acgccagcag
     4741 aacgacgtta ccctgcatat cgttcgccac gccataaact ggcttatctt tcgtcggaag
     4801 gcttaacgca aaggccgcct gactcaccgg atcctgactg gtacgactta acgttttagg
     4861 ctcgccaaaa ctcagacccg ccgctttcat cgcttccgcg cctttgcccg ctttcagctc
     4921 gaccagcagt ttttccgcat ccagcttcgc ctgttgttcc gctttgttat gcttcaccag
     4981 ggcagtgacc tgttctttca cttctgccaa cggcttcacg gcttcaggtt tatgttcgct
     5041 cacgcgcaca acaaaagccc ggtcgccatc tacggtgata atgtctgaat tcggccccgg
     5101 cgtaccgttt tcgcctacca gaccgccatt aaagatagca tcggctaccg gtttgaagtt
     5161 cagctcttcc ggtaaggtgt cacggctaaa ccagccggtt tcaacggctt ttacgccagc
     5221 gacctgttca gcgcctgcta acgactcatt gtcgttgctt gccgcatcgc tcaccttctg
     5281 ctgcaacgca tagtaagcat ccagcgcttt ttcctgtttc actttcgcgg caatgtcgtc
     5341 gcgaacctcg cttaacggtt tcactttggc aggctgaata tcatccagac gcgccaccag
     5401 aaaaccgaca gacgacttaa tcacgccaga tatctggcct ttttctttta atccggcgtt
     5461 tttcagttcc ggcaccgtgg cagactcttc cagccagccc atatcgccgc cattacgcgc
     5521 agagatgata tcggtagatt tctctttcgc cagcgtggcg aaatcttcgc ccttgttcag
     5581 cgcatccagt accgctttcg catcatcttc cgttttggtc tgaataatgc tgtaacgaat
     5641 gcgctccggc tgagtaaact gatctacatg ctggtcataa taggcctgaa tatccgcatc
     5701 gctgaccggt gcctgcatcg tcgcggcatc cagcttgata tagcttacgc ggaactgttc
     5761 cggcgtcata aagcggactt tattctgatc gtagtagctg gacacttcct gatcggtcac
     5821 ctgctgcttc gccgccagcg cgttgacatc aataacggct tcacgcacca cgcgctgttg
     5881 agagactaat gccgccagtt cgtcggtttc ccctttcagc ataaaatcag taccggccac
     5941 gccgttgatc agttgctgag tggtaagctg gttacgcagc gcctgagtat actgatcggc
     6001 cgtcattccc atctgattca caatcgcgtt atagcggttg ttgtcaaact taccgtccac
     6061 ctgaaaagcg ggagtggcga aaatcgcctg ctttacctgc tcatcgctga tgcccagttt
     6121 cagttcgcgg gaatattgat ccaacagcgc ttcatctatc agacgattca gcacctgctg
     6181 gcgcaggctt ttcatataac cttcgttggc cgccagttca gaatacctgt cgcccaactg
     6241 ctgctgcata cggttacgtt cgttgttaaa cgcattctca aactgtgccc ggctgatttc
     6301 ctggccattc acttttgcgg cgtagttatt gcttccgcca atcaggtaac cactaacgcc
     6361 ggtcaaaatg aacgacacga taatgataac gaaaataatc ttgagcacga gactgtttgc
     6421 agccgtgcgt aagctgtcca tcatggtgta accacactcc gctgtaggtg actttacact
     6481 ttatctttca ggcggcttct ctgctggcta ctgagtgctt cgctcagtag ccgcgtcgac
     6541 gcaacctgaa tgatttgcgt atatagactt cacgcgcatc gcattttctg aacgcggcgc
     6601 acaaaagcct attgtgacaa gaaacgaggg caattgtcag cccgcaacgc acagaaagtc
     6661 ccgaatcgcc aataaaaaag gcacatcagt tgatgcgccc ttgtactttg tcacatcccc
     6721 cgaggggatc acgcttagtt taccgcgtct ttcagcgctt tacctgcacg gaaactcggc
     6781 actttggcag cggcgatggt gatctcttta cctgtttgcg ggttgcgacc agtacgggca
     6841 gcacgctctt taacagcaaa agtaccaaag cctaccagtg caacgtcatc cccttctttc
     6901 agagattcgg taacagaagc aataatcgca tctaacgcac gtccagccgc agccttagag
     6961 atatcagccc ctgcagcaat tttttcgatc agttgagatt tattcactct tctcttcctc
     7021 tttataattt atatcgcacc tgaatccttc gaagtacgac cgcgcagcag ttatatcagg
     7081 cctgccacgc ccttacaaca cccgttaatg gtggcagacc caatcaacca tctaaattag
     7141 ctatacaaaa aaaggctggc aagtccgaaa tagcctgcca gccctgtttt tattagcgct
     7201 atttgcgcga ggtcactatt ttgcggttac aacctgcatt ccagacggtt cgttttgcag
     7261 agcaagcgtc agaacttcct caatgcgctt cacaggatga atatccagat cggcaatcac
     7321 gttgtccgga atttcctcca gatcacgttt attttcgaat ggaattaaga ccgttttaat
     7381 cccgccgcga tgcgccgcca acagtttttc tttcaggccg ccgatcggca acacctgacc
     7441 acgcagcgtg atctcaccgg tcattgccac atctgcgcgc accggattac cggtcaggca
     7501 ggaaaccagc gcggtacaca tcgcgatacc ggcgcttgga ccgtctttcg gcgttgcgcc
     7561 ttccggcacg tgaacgtgga tatcgcgttt ttcgtaaaag tccggattaa tacccagttt
     7621 ttccgcgcgc gcgcgcacca cggtcagcgc cgcctgaata gattcctgca tcacttcacc
     7681 gagcgagccg gtgtaggtca gcttgccttt gcccggtacg caggcggttt cgatggtcaa
     7741 cagatcgccg cccacttccg tccacgccag ccccgtcacc tgacccacgc ggttttcgct
     7801 atccgcgcgg ccataatcaa agcgctgcac accgaggtag tcgtgcagat tatcgccgtt
     7861 aatttcaata tgttttaacg acttatcgag caacagttgt ttaaccgctt tacggcacag
     7921 tttggagatt tcacgctcca gactacgaac gcccgcttca cgcgtgtaat agcggataat
     7981 accgataatc gcgctatcgt cgaccgtcag ttcgcctttc ttcagcgcgt tacgctcgat
     8041 ctgcttcggc agcaggtgac gtttagcaat attcagcttc tcgtcttcgg tataaccgga
     8101 cagacggatc acttccatac gatccagcag cggcgccgga atgttcatgg agttggaggt
     8161 ggcgacgaac atcacatcgc tgagatcgta atccacttcc aggtaatgat cgctgaacgc
     8221 cacgttctgc tccgggtcca gcacctcaag cagtgcggaa gccggatcgc cgcgcatgtc
     8281 cgaggacatt ttgtcgatct catcgagcag gaatagtggg tttttaaccc ccactttggc
     8341 cattttttgg atcagtttac ccggcataga gccaatgtaa gtccggcgat gaccgcggat
     8401 ttccgcttca tcacgcacgc cgcccagcgc catacggacg tatttacgcc ctgtggcttt
     8461 agcgatggac tggcccaacg aggttttacc tacccccggc ggccccacca gacacaggat
     8521 cggccccttg attttattta cacggctttg taccgcgaga tactcaagga tgcggtcttt
     8581 cacacgctcc agaccataat ggtcagtatc gaggatttcc tgcgcctgac gcaggtcttt
     8641 tttgaccttg ctacgcgcat tccacggcac ctgcaccatc cagtcgatgt agccgcgcac
     8701 cacggtcgct tccgccgaca tcggagacat cattttcagc ttctgcagtt ccgcttccgc
     8761 tttctctttc gcctctttcg gcattttcgc cgcgtcgatc ttacgcttca gcgcttcgtt
     8821 ttcgtccggc gcgtcgtcca tctcgccaag ttctttctga atcgctttca tttgctcgtt
     8881 cagatagtac tcgcgctggg atttctccat ctgctttttc acgcggttgc gaatgcgttt
     8941 ctcaacctgc agcagatcga tttcagattc catcatcgcc atcagatatt ccagacgttc
     9001 gttaacgtcg gacatctcca gtacggactg tttatccgcc agtttcagcg gcatatgcgc
     9061 ggcgatggtg tcagccagac gtgcagggtc gtcaatgcta ttgagtgacg tcagcacttc
     9121 cggcggaatt tttttgttca gcttgatgta gccttcgaac tggctgatag cggtacgcac
     9181 cagcacttct tgttcacgct catcaatggc tggcgaatca aggtactccg ccttcgcgga
     9241 gaaatgttcg ccgttgtcag acagcgcgga aatacgcgcg cgctgtaacc cctcaaccag
     9301 cacttttacg gtgccgtcag gcagtttcag catctgcaaa atagaggcca cggtcccgac
     9361 ggtgaaaaga tcgtttacac ccggctcatc cgttgatgct tccttctggg cgaccagcat
     9421 gattttttta tcatggtcca tagccgcttc cagacaacgg atagattttt cccgccctac
     9481 aaataagggt atgaccatgt gcggataaac caccacatcg cgcaagggca atacggggat
     9541 ttcaatgcgt tcagaacgct caggattcat agagctctct cttagtttag tgtccgccag
     9601 gtaatcagat agtatagctg tgctccatac cacctataac atgtacgtca gtatatgggg
     9661 atgtttccca cacattcaac ggcgtgttta caggaaaaac gaaaggggag ataaaatccc
     9721 cccttttttg gctaactgat tgtatgaatg tttaattatt cgccagaagc ctgcgcttcc
     9781 ggtttgccgt aaatcagcaa cggcttactc tgaccggcaa taacggactc gtcaatcacc
     9841 actttttcga cgtcttccat agatggcaaa tcgtacatgg tatccagcag cgccgcttcg
     9901 acgatagaac gcaggccacg ggcaccagtt ttacgcgcca tcgctttcct ggcgatagcg
     9961 ttcagcgctt cgtcacggaa ttccagatcg acgccttcca ggttaaacag cgcctgatac
    10021 tgcttggtca gcgcattttt cggctctttc aggatttgaa ccagcgcttc ttcgctgagt
    10081 tcgttcagcg tcgccaccac tggcagacga ccgataaact caggaatcag accaaatttg
    10141 atcaaatctt ccggttcaac ctgcgacaac agctcgcctt cactggcttt gtcggacttc
    10201 gctttcaccg tcgcgccaaa accaatgccg gagccggttt caacacggtt agcgatcact
    10261 ttatccagac cggcaaacgc gccgccgcag ataaacagaa tcttagaggt atctacctgt
    10321 aagaactcct gctgcggatg tttgcgaccg ccctgcggtg gaaccgcggc gacggtgcct
    10381 tcgatcagtt tcagcaacgc ctgctgtacg ccttcgccgg aaacatcgcg ggtaatggac
    10441 ggattgtctg atttacgcga aatcttatcg atttcatcaa tgtagacaat cccacgctgc
    10501 gctttttgca cgtcgtagtc gcatttctgc aacagtttct gaatgatatt ctcgacgtct
    10561 tcccccacgt aacccgcttc ggtcagcgtg gtcgcatccg ccatagtgaa cggcacatcc
    10621 agcaagcgcg ccagcgtttc cgccagcagc gttttaccgg aaccggtcgg tccagtcagc
    10681 agaatgttgc ttttgcctaa ctcgacgcca ttgctggtat cgccgttacg cagacgcttg
    10741 tagtggttat agaccgccac cgccagcact tttttcgcct gctcctggcc gataacgtaa
    10801 tcgtccaggt gagtacgaat ttcatgcggc gtcggcagcg cactacgttc acggtgcgga
    10861 gcaacttctt taatttcttc gcgaataatg tcgttacata aatcgacgca ttcgtcgcag
    10921 atatacacgg atggaccggc aatcagcttg cgcacttcat gctggctttt gccgcaaaaa
    10981 gagcagtaca acaatttgcc cgagccatct ttgcgtttat ctgtcatgag tcaaaacctc
    11041 ttctttgttc tttgtgccgc acacgacgac gcaaatgcca ttctcaggcg caagccgcta
    11101 atcagcgttg tgccgccctt cattagtata tacacaaaat cattcgagct acatcaaggc
    11161 ggcaactcag cgactccgca ggcgcttaca taagtaagtc actgggaggc gcgctggcaa
    11221 ccaacaccga ggtagcgtga aggatgaagt gtatagcggc acacttgcgt ccagggcatc
    11281 aattacgatg ggtcaaaatt gagtcaacca aaccgtactc taccgcttca ggcgcggaga
    11341 ggaagcgatc gcgctcagta tcacgttcaa tctgctcaag agattgaccc gtatgatgcg
    11401 ccataagttc attcatgcgc ccttttactt tcaaaatttc gcgggcgtga atttcaatat
    11461 ccgtcgcctg gccctgatag ccgcccagcg gctggtggat catgacgcga gagttcggca
    11521 agcagaaacg tttgcctttc gccccggcag tcagcagaaa cgcccccata gaggccgcct
    11581 gtcccataca aatggtgctg acgtctggct taataaactg catggtgtca tagatggaca
    11641 tccccgcagt aattacgccg ccaggagaat taatgtacag atagatatct ttttccgggt
    11701 tttccgcttc caggaacagc atctgcgcca cgatcaggtt agccatatgg tcttcgacct
    11761 ggccggtcag aaatatgacg cgttccttaa gtagacgaga atagatatca aaagagcgct
    11821 caccgcgtga ggtctgttca atgaccatcg gcaccagcgc catatgaggg gccaaattat
    11881 ctcgttctcc gctgtatgac atttccgtct cctggataaa aattgaaaaa atctgctgta
    11941 ctgattgtaa cctgatggac ggattatcag ccagtccctc tgtaatgggt acggcatcgc
    12001 cataattcaa gcataacaat cttttgctct aacgctaaca ctgaaacgcg gttttcgcac
    12061 ccttaccacg caaaatgcgt gacaaaaaaa acccgtcact gaaaggtgac gggtttttgt
    12121 gcaaatttcg tgcttttaac gcgaaaaatt acgcctgctg gttcatcagc tcattgaagg
    12181 aagtggcttt ttcagacact ttcgcttttg ccagaaccgc ttcaacagcc tgttcttcca
    12241 gagcgacgtt acgcatattg tccatcagct ctttattttt gctgtagaac tcaatcactt
    12301 ctttcggatc ttcgtaagca gaggccatct cttcgatcag gcctttaacg cgttcttcgt
    12361 ccgctttcag ctcgttggta cgaatgactt cgccgagcag cagaccgaca actacacgac
    12421 gcttagcctg ttcttcgaac agttcgcgcg gcagctccag agcctgtttc tcgttaccac
    12481 caaaacgctg cgcagcctga cgacgcagaa cgtcgatttc gctgtcgatc agcgcagacg
    12541 gtacgtcgat gtcgttagct tttaccagac cttcgatcgc ctgagactta acgcggttac
    12601 gcaccgcgcc tttcagctcg cgttccatgt ttttacgtac ttcagcgcgc agaccggcta
    12661 cggaaccatc ttcaacgccg aaacgtttga tgaattcttc ggtcagttcc ggcagttcgc
    12721 gttcttcaac tttcttcagg ttgataacga acttagccgc tttacctttc aggttttcag
    12781 cgtggtactc ttccgggaag gtcacatcga tagtgaactc ttcgccagct ttgtggcctt
    12841 taacgccgtc ttcaaagccc ggaatcatac gaccctggcc catcgccaga acgaaatcgg
    12901 tcgctttgcc gccttcgaac tcttcgccgt ctacagagcc ggtgaaatcg atggtcacgc
    12961 ggtcttccgc atccgcagcg ccgtcttttt ctttccaggt cgcctgctgc ttacgcaggg
    13021 tgtccagcat cacatcaacg tcagcgtcgg tgacttcaac aaccggcttt tcaacttcga
    13081 tggattcgag gccagtcagc tcaacttccg gatagacttc aaactcgacg gagtaagtga
    13141 agtcttcacc cactttgtat tcgcccggaa catagttcgg cgcgcctgcc gggttaattt
    13201 tttctttgat gatcgcgtca acgaagttgc ggctcatcag atcgcccagc acgtcctggc
    13261 gaacagaagc gccataacgc tgagcgacga tattcatcgg tactttgcct ttacggaagc
    13321 cgtcaatacg tacttttttc gctacgttga ccagctcgct ttttacagcg gtctcgatgc
    13381 tgtcagcagc gattgtaatc gttacacggc ggccaaggcc ctgagtggtt tcaactgaaa
    13441 cttgcatctt gttacctcaa aaaatcacag tgctcggtca actctactcc gcaagcacgt
    13501 gctatttgct tcgcggaacc gggatgttct cataatcaat cacattccct gtcgtcagaa
    13561 tcatcccgaa gacgttcata tataagacgg cgcattatag cggcatcact tttgtgagtc
    13621 gagaacggtg attgtgcgat gctgcggcgg ttttcacaat tctcggctaa tttttgtctg
    13681 aatactgtac gacacgctca aaattcagac aaaataaaac ggcccgcagg ccgttttcac
    13741 ataattctgt agcaacatac tggaaaagcg gaggtagttg caaatccgtt ttgctacgcg
    13801 atgcttcccg cgccgcgaca aggaggcgac gcgaagatag tatcctgcaa tccttcccac
    13861 tctttgaggg tataagtatg cagtgccagc gcatgtacgg ttgtggaaag ttccgccgtt
    13921 aacgtaccgt aaatcatccg atgacgatta agaaaacgtt cgcctgtaaa gcgatcgctc
    13981 accagcacga ccttaaaatg gctttccgat cctgctggaa cattgtgacg atagctttca
    14041 tccacaactt cgagaaacac ggggtcgaac gctgtcctta atttttcttc tatttgctca
    14101 cgtatcatca tgaaaatctc ctccgacaac gctgtgatgt cacccatccc tttaaatact
    14161 agccgctttt accgtttcca ttacagcatg acaacaaaaa tttagctttc gtctgattat
    14221 ttcagccaaa cgtatgaagt ttactgcctt aatcattctt ttagcgctca aaatccccgc
    14281 tcgcgccgtt atcaatacca aatcggacat tacgacgaat ttacctgcgt tgaccacttc
    14341 ccctcgccgt tagcggtgtt atgatggcgg gaatttttac ctatcacgtt ttaagcgtca
    14401 ttgagagcct gaatatgtta aaaaaacttc tctttccgtt agtcgctctg tttatgctgg
    14461 caggatgcgc cacaccgccg acgaccattg acgtcgcgcc gaagatcacc ttgccacagc
    14521 aggacccgag cctgatgggc gtcaccgtta gcattaccgg cgcggaccaa cgccaggatc
    14581 aagcgttagc gaaagtcacg cgtaacaacc agttggtaac gttaaccgcc tcccgcgatt
    14641 tacgcttcct gttacaagaa gtcctggaaa aacagatgac ggcgcggggc tatatgatcg
    14701 ggcctaacgg cgcggttaat ctgcagatta ttgttaacca actgtatgct gatgtttccc
    14761 agggcagcgt gcgctacaac atcgcgacca aagcggatat cgcgattatt gcgaccgcgg
    14821 caaatggcaa caagatgacc aaaaactatc gcgccaacta ctctattgaa ggggcgttcc
    14881 aggcctctaa ccagaatatt gccgacgcgg tgaacagcgt tctgaccgat accattgctg
    14941 atatgtctca ggacaccagc attcacgatt ttatcaagca aaacgcccgt taatagcaac
    15001 aacaagaccc ggcagaagcc gggtctgtag atgcctatgt caagtcaata tttacgtatt
    15061 ttccagcaac cgcgttcagc cattctgctg atattgggtt ttgcctccgg tctcccgctg
    15121 gcgctcactt ccggtacgct acaggcgtgg atgaccgtcg agaatatcga tcttaaaacg
    15181 attggcttct tctcgctggt tggtcaggcc tatgtgttta agtttctctg gtctccgctg
    15241 atggaccgct acacgccgcc ttttttaggt cgacgtcgcg gttggttact cgccacccaa
    15301 ctgttgttac tggcggcgat tgcggcgatg ggctttcttg aacccggcac gcagctacgc
    15361 tggatggcgg cgctggcggt ggtgattgct ttttgctccg cctcgcagga tatcgtgttc
    15421 gacgcctgga aaaccgatgt gttacccgca gaagaacgcg gcgctggcgc ggcaatcagc
    15481 gtgcttggct accggttggg gatgctggtt tccggcggac tggcgctatg gctggccgat
    15541 cgctggctcg gctggcaggg catgtactgg ctgatggcgg cattgttgat cccctgcatt
    15601 atcgccacct tactggcgcc ggaaccgacc gatactatcc cctccccgaa atcgctggaa
    15661 caggccgtcg tcgcgccgct acgcgatttc tttggccgta acaacgcctg gctgatttta
    15721 ctgctcattg tgctttataa actgggtgac gccttcgcca tgagcctgac caccaccttt
    15781 ttgattcgcg gcgtcggctt tgacgccggc gaagtcggtg tggtcaataa aacgttgggc
    15841 ctgctggcga cgatcgtcgg cgcgttatac ggcggcatat taatgcagcg tctttcgctg
    15901 tttcgcgcgc tgctgatttt cggcattttg caaggcgcgt ccaacgccgg ttactggttg
    15961 ctctccatta ccgataaaaa catgttcagc atgggcgcgg cggtcttttt cgaaaatctg
    16021 tgcggcggga tgggtactgc cgcctttgtc gccttattaa tgacgctatg taataagtcg
    16081 ttttccgcaa cacagtttgc cctactgtcg gccctctccg cagtaggccg ggtttatgtt
    16141 ggtcctgtag cgggctggtt cgttgaagcg cacggctggc cgacattcta cctcttctcg
    16201 gttgtcgccg ccgttcccgg gctgttactg ttgctggtct gtcggcaaac gctggaatat
    16261 agctggcaga gcgagcgttt cattccccgc acgcaatacc gtggcaccta caatttcgcg
    16321 ctttcaatcc tgctcgcggg cgtcgctttg ctggcggtgt gggtactcct gctgaccatg
    16381 aacgcgttgg attacactaa cttttcattc ctgcccgaat tgcttgagac tgcggtagcg
    16441 attgccgtgt gcggcattgt ctttggcggg ttgctggact acctggcgct acgaaaaaca
    16501 cgcctgctgt aaaacattat
//
LOCUS       DAJVSD010000083        16449 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.083, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000083 DAJVSD010000000
VERSION     DAJVSD010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 16449)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16449)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16449
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.083"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..588
                     /locus_tag="OQP62_002177"
     CDS             <1..588
                     /locus_tag="OQP62_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1721722.1"
                     /translation="TDDYYTYLGIASLFEDGKCFMFPLNGEYNSCQISASEDIIIIID
                     GRVLIQGVWKGFKALMQHYPHARRIWLTRRDIGKLYPHGCDRDPDIDPDLAKPVFIEH
                     FIKYACANDVAVGEIAPLTKKEEELLWHFLYKKSMSQIASSYGISRKTLYIHRLRICR
                     KYGFKRFFHLLFIYQRSRHIFASKICRVDKNADQA"
     gene            599..823
                     /locus_tag="OQP62_002178"
     CDS             599..823
                     /locus_tag="OQP62_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721723.1"
                     /translation="MKKLTMRECESINPTLLLAIKILISALDEKTKIRLREHIEKTEQ
                     EIASSIHDSIMTETFLQQMKDIRYILNIVP"
     gene            881..1240
                     /locus_tag="OQP62_002179"
     CDS             881..1240
                     /locus_tag="OQP62_002179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4156 domain-containing protein"
                     /protein_id="HCS1721724.1"
                     /translation="MKKILVCFVGLALTACSANSLNYGAEQVRVMTSEPGKECSYLGD
                     ITGSQGNFFTGGWTSNSNLETGARNDLKNKAYKMGDNTVVLLTQRAGQTGSSWHGSGS
                     SKQTNVTLSGNVYRCPR"
     gene            complement(1310..1867)
                     /gene="mdsC"
                     /locus_tag="OQP62_002180"
                     /pseudo
     CDS             complement(1310..1867)
                     /gene="mdsC"
                     /locus_tag="OQP62_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001521068.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit MdsC"
     gene            1997..2191
                     /gene="golB"
                     /locus_tag="OQP62_002181"
     CDS             1997..2191
                     /gene="golB"
                     /locus_tag="OQP62_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gold resistance metallochaperone GolB"
                     /protein_id="HCS1721725.1"
                     /translation="MQFHIDDMTCGGCASTVKKTILTLDANATVRTDPATRLVDIETS
                     LSAEQIAAALQKAGFPPRER"
     gene            2482..3735
                     /locus_tag="OQP62_002182"
     CDS             2482..3735
                     /locus_tag="OQP62_002182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1721726.1"
                     /translation="MYTPLNWTTTQRHVAFASFTSWMLDAFDFFILVFVLSDLAEWFH
                     ASVSEVSIAIMLTLAVRPIGALLFGRMAEKYGRRPILMLNILFFTVFELLSAWSPTFM
                     AFLIFRVMYGVAMGGIWGVASSLAMETIPDRSRGLMSGIFQAGYPCGYLFASVIFGLF
                     YSMVGWRGMFLIGALPVVLLPYIWFKVPESPVWLAARARKENTALLPVLRKQWKLCLY
                     LVLVMAFFNFFSHGTQDLYPTFLKMQHGFDPHLISIIAIFYNIAAMLGGIFYGTLSER
                     IGRKKAIMIAAFLALPVLPLWAFSSGSFTIGLGAFLMQFMVQGAWGVVPTWLNELVPA
                     NARAVLPGFVYQLGNLLASVNATLQARIAETHGGNYGLAMAIVAGAVAILICVFVAFG
                     RETRGVVISGTDSDALPESAIGHRT"
     gene            3924..5882
                     /locus_tag="OQP62_002183"
     CDS             3924..5882
                     /locus_tag="OQP62_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HCS1721727.1"
                     /translation="MLKDNQKHNESVAPNSAFLSELQRALPEFFIADRYNEQGELIAK
                     GGFDLAKFERALKARNIDELTSGYQIDFIGKDYAKKQAGEKSVTVIVPDVEHNTLAEN
                     KNSHNLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYPDHFEYSDRALQD
                     MFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFISIDDNEYANLK
                     LMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAKTGQGALRLEPLSKEY
                     IQKSYKEPTEQFPEGKWRPVPLTVSKGLSGGGYTYKITTPNGTVHERLWAYPEASYQK
                     LVADNLVYFGKDNGGIPQRVMYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFD
                     TPKPTALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQAL
                     SNNTIAKKAGYNTIDEISRERITRVAAKIRANNPATNSDLGFKHYRFATPTQQTLDDL
                     DSFDIATGHFINTSGQLAAFTESGFTDMINPFSARGLGVPGGASGEETLLTTWLVADG
                     YKMDIDVQTVDFSGYCARYVDNTRLYLIDERWGTEQTRDLLNHIGTHQLPVQTIVIYG
                     YSFDLESIRELEIGLKQLDQKVNLVKRY"
     gene            5892..8863
                     /locus_tag="OQP62_002184"
                     /pseudo
     CDS             5892..8863
                     /locus_tag="OQP62_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459353.3"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type III restriction-modification system
                     endonuclease"
     gene            9139..9240
                     /locus_tag="OQP62_002185"
     CDS             9139..9240
                     /locus_tag="OQP62_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721728.1"
                     /translation="MLNRYYRFAVEKDDPSEAPESGDKPDSQPQKKS"
     gene            9355..10758
                     /locus_tag="OQP62_002186"
     CDS             9355..10758
                     /locus_tag="OQP62_002186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HCS1721729.1"
                     /translation="MEFDAFFLARLQFAFTVSFHIIFPAITIGLASYLVVLEGLWLKT
                     RNPVWRSLYQFWLKIFAVNFGMGVVSGLVMAYQFGTNWSGFSQFAGSITGPLLTYEVL
                     TAFFLEAGFLGVMLFGWNKVGPGLHFLSTCMVALGTLMSTFWILASNSWMHTPQGFEI
                     HNGQVVPVDWFAVIFNPSFPYRLLHMSVAAFLSSAMFVGASAAWHLLKGNDTPAIRRM
                     FSMALWMAVVVAPVQALIGDMHGLNTLKHQPVKIAAIEGHWENTPGEPTPLTLVGWPD
                     MEAERTRYALEIPALGSLILTHSLDKQVPALKDYPKEDRPNPTVVFWSFRLMVGMGVL
                     MIFLGLASLWLRYRRRLYHSRPFMHFALWMGPSGLIAILAGWVTTEVGRQPWVVYGLL
                     RTRDAVSAHSTLQMSISLLAFFVVYSLVFGVGYIYMIRLIQKGPQPAETPTAETDGRP
                     ARPISAVGESLEQEKRE"
     gene            10755..11765
                     /gene="cydB"
                     /locus_tag="OQP62_002187"
     CDS             10755..11765
                     /gene="cydB"
                     /locus_tag="OQP62_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HCS1721730.1"
                     /translation="MTIDLPVIWFAIIVFATLMYIVMDGFDLGVGILFPFIRDKHDRD
                     VMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVITDALTIPLVVMLLGLIFRGVAFE
                     FRFKATESHRAFWDKSFIVGSILATFAQGVVVSAVVSGFQVEGRTFSGSQLDWLTPFN
                     LFCGVGLVVTYALLGATWLIMKSEDPLHSRMCALSRPLLIVLLLVMGGVSVWTPLTHD
                     DIAERWFTLPNLYYFLPVPVLVLAFSVWLWRSVKKPQSHARPFILTLGLIFLGFSGLG
                     ISIWPNIIPPDISLYAAAAPSQSQSFMLVGALIIIPIILAYTFWSYYVFRGKVRHGEG
                     YH"
     gene            11765..11896
                     /locus_tag="OQP62_002188"
     CDS             11765..11896
                     /locus_tag="OQP62_002188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459357.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2474 domain-containing protein"
                     /protein_id="HCS1721731.1"
                     /translation="MVKVKKWSRRVVWMVAIWCASVLLLAGVGMLFRLLMTSAGFRS"
     gene            12102..13106
                     /locus_tag="OQP62_002189"
     CDS             12102..13106
                     /locus_tag="OQP62_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1721732.1"
                     /translation="MSPISCHSSAAPAMKKIFSVSDFIAFGERYGIDYRFPALPQYTQ
                     SSPVLHGDIEEIALPGGICITRSDVHVLQPYETTSRHSSPLYMLVVLEGNVALAVNEQ
                     TFLLSAGMAFCSQLSEQQTIRAHHGADSKLRTLSLGMYPDGGWRERLPVSLADEWERS
                     AASARVWQVPEFLLSGLRYAQQPGPHAASRQLMLEGIMLQLLGYALNLCQPATQKRGL
                     PVTGEYQRLELIRRLLEQTPEKAYTLNELARRAAMSPSSLRCKFRHAYGCTVFDYLRD
                     CRLARARRYLMEGYSVQQAAWMSGYQHATNFATAFRRRYGCSPGELRDASLTASRHCA
                     "
     gene            13252..15360
                     /gene="foxA"
                     /locus_tag="OQP62_002190"
     CDS             13252..15360
                     /gene="foxA"
                     /locus_tag="OQP62_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrioxamine B receptor FoxA"
                     /protein_id="HCS1721733.1"
                     /translation="MPLEMFMFATTRMALLIGGAIGGATFPLFAQETTKNDTVIVTSP
                     VQSGATRLATPDIETPQSVSIITRQQFEEQGATSVRQAVSYTPGVYSNQIGASNRFDY
                     IVLRGFSDGSLDNVYLDGLKMMGDTNSHSSLVVDPWFLEDIEVVRGPASVLYGRSSPG
                     GIVSLTSRKPAFDAGGEVKLFAGNNNQRGAAFDVTGPLDDNERVAARLSGMTRYADSQ
                     FTPLKEERYALMPSLTWRITDRTRLDLMAYLHRDPQGGSHSGLPYQGTVVPYNGGKIS
                     NTFFEGEDDYDKYDRRENMVGYNIEHLFDNGWSVRQKLRYLHTKVTLNQVYAAGWLNE
                     TALNRGYSGSGEKMSAIALDNQLDGSVDTGAINHRLLVGIDYQDRSNHTTGYYGAFPP
                     IDAFNPVYGAQPDYITLYSREKHKLRQTGYYLQDQMSWDRWRFTLGGRYDRVSVSNID
                     KLHDSRSDLDKNNVSTRAALLYLFDNGVAPYLSYSTAFTSTSFADENGNVLEPMKGKQ
                     WEAGVKYEPLGGNSQFSAAVYRINQTNIATKEEPTDPYRSIGEIESKGVELEAISHLS
                     DSVRLQAAYTYTDIRYKKSSPQEQGKRAVYAPRNQASAWLSYDVKSGLLEWLTLGSGI
                     RYVNGVTSDRLNTHTLPSYTLVDMVVGYDLSSIGLNGLSAQLNVNNLTDKRYVAACNS
                     LSYCYFGAERSIVGSVSWAF"
     gene            complement(15401..16033)
                     /locus_tag="OQP62_002191"
     CDS             complement(15401..16033)
                     /locus_tag="OQP62_002191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HCS1721734.1"
                     /translation="MEPFHAVVLTVSLFVLTFFNPGANLFVVVQTSLASGRRAGVITG
                     LGVATGDAFYSGLGLFGLATLITQCEAVFSLIKIVGGAYLLWFAWNSIRHQATPQMST
                     LQTPIAAPWTIFFRRGLMTDLSNPQTVLFFISIFSVTLSAETPTWARLMAWAGIVLSS
                     VIWRIFLSQAFSLPAVRRAYGRIQRIASRVIGAIIGMFALRLLYEGMTHR"
     gene            16265..>16449
                     /locus_tag="OQP62_002192"
     CDS             16265..>16449
                     /locus_tag="OQP62_002192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721735.1"
                     /translation="MKTGYKVMLGALAFVVTNVYAAEIMKKTDFDKVASEYTKIGTIS
                     TTGEMSPLDAREDLIKKA"
BASE COUNT         3886 a         3940 c         4414 g         4209 t
ORIGIN      
        1 acggatgatt attatactta tttaggcatc gcttcactct ttgaggatgg gaagtgcttt
       61 atgttcccac ttaatggaga atataattcg tgtcagatat cagctagcga agatatcata
      121 attattattg atggacgagt tttgattcag ggggtctgga aaggttttaa ggcgctcatg
      181 cagcattatc cacatgctcg tcgaatctgg ctcacgcgca gagatattgg aaaactttat
      241 ccacatggct gcgatagaga tcctgatatc gatcccgatt tggcaaagcc tgtttttatt
      301 gagcatttca ttaaatacgc ttgtgcaaac gatgtagcgg tcggtgaaat tgcgccgttg
      361 acaaaaaagg aggaagagtt gttatggcac tttttatata aaaagtcgat gagtcagatc
      421 gccagtagct atggcattag tcgtaagact ttgtacattc atagattgcg tatctgtcgt
      481 aaatatggct tcaagcgctt tttccatttg ctatttattt accaaagaag tcgccatatc
      541 ttcgcatcta aaatttgccg tgtagacaaa aacgccgatc aggcttgaag taaacaagat
      601 gaaaaagtta acgatgagag agtgtgaaag catcaatcct actttgctgc ttgccattaa
      661 gatacttatc tcggcgcttg acgaaaaaac aaaaataagg ctcagagagc atattgaaaa
      721 aactgaacaa gaaatagcct caagcataca tgatagcatc atgacagaga cttttcttca
      781 gcaaatgaaa gacattcgtt acatcttaaa tatagttcct tgacggcgtt cagaagcaag
      841 aacgcgttat tatttaatga ttaatagacc aggtattagt atgaaaaaga tcttagtatg
      901 tttcgtcggc ttggctttaa ccgcatgtag cgctaattcg ctgaattatg gcgctgaaca
      961 ggtacgggtg atgaccagcg agccaggtaa ggaatgcagc tacttaggag atatcacggg
     1021 cagccagggg aatttcttta ccggtggctg gacttccaac agtaacctgg aaacgggggc
     1081 ccgtaacgat ctgaaaaaca aagcttataa aatgggcgac aatacggtag tcctgttaac
     1141 ccagcgtgca ggccagacag gaagttcatg gcacggttcg ggctcaagca aacaaacgaa
     1201 tgtcacgtta agcgggaacg tttatcgttg ccctcgttaa ccttattttg caggcaatat
     1261 atgcctgttt agcgcgcgcg ccgcactggc gacgcgcgcg ctatttgggc taaccttgct
     1321 ttttctcgct gtattcccgc caaccgccgc ctaatgcttt atacaggcta atgatattca
     1381 actgttgcat gagacgtgtg cgtaccagac gctgttgcgc gccataaagc atacgatggg
     1441 tatcaagcag cgtaaggtag tcatcgacgc cttcctgaaa acggagtccg gccagctcat
     1501 aggcgatttg gctggcttca accgcgcgtt gttctgattg cacctggtca ttcagcgtac
     1561 gctgtcccgc cagaccatcc gccacgtcgc gaaaggcttg ctgaataacg ttttcatacc
     1621 aggcgatttc aatctgtttt tggacatgcg ccctatccag gtcagcgcgt aatgcgccgc
     1681 cgtgaaagag aggcaaggtg atttgcggta gaaaacgcca gcttcccgat cccggttcaa
     1741 agagtccgct aagagacgcg ctggccgttc ccgccgagcc tgtcaggctg atggtcggga
     1801 agaaggcggc gcgcgctgcg cctatccggg cgtttgcgcc gcgcagcctg tactcggagg
     1861 cgcgtaccgg agcggtattg cgccgtcctc gtcgccacgg actggcaaag cgtctgtaag
     1921 tcctgagatt acgcttgacc ttccaacact gacaaggccc agactggcaa cagttcccac
     1981 acaaaaggag ttcactatgc agttccatat tgatgacatg acctgcggcg gctgcgccag
     2041 tacggtaaaa aagacgattc tgactctcga tgctaatgcg acggtgagaa ccgacccggc
     2101 gacgcgtctg gttgacattg aaacgtcgct atccgcggag cagattgccg ccgccctgca
     2161 aaaggccggt ttcccgccgc gcgagaggta atcgtcaatg gcgatcggtc tggcgacagg
     2221 ccggtcgcga tacgctagcc acgcttcgct tttctttgcg tgagataatc cccataaaaa
     2281 atgtgacaaa tcatgtgcca gtaagctttg ttaataatat gtaatgattt gtctattttt
     2341 gctaacattt tacctgctat atacaaaaag ataacaaata agtagcgcaa cgctaccttg
     2401 ttacgtcgct ttgacgacgg gagcgctcca gcgtttcgcc gcttcaaagc ttgatgttat
     2461 ttttgatgca ggacactacc tatgtacacc cccctgaact ggacgacgac acaacgacat
     2521 gtggcgtttg ccagctttac cagttggatg ctggatgcgt ttgatttctt tatccttgtc
     2581 tttgtactta gcgatctcgc cgaatggttt cacgcttccg tatcggaggt ttccattgcg
     2641 attatgctga ccctggcggt acgtcccatt ggcgcgctgc tatttggccg aatggcggaa
     2701 aagtacggac gtcgaccgat actgatgctc aatattctgt tctttacggt gtttgaactg
     2761 ctttccgcct ggtcgcccac cttcatggca tttctgattt ttcgggtcat gtacggcgtg
     2821 gcgatgggcg ggatatgggg cgtcgcgtca tcactggcga tggaaaccat tcccgatcgt
     2881 tcgcgtggcc tgatgtcggg catttttcag gcaggctatc cctgcggcta tctgttcgcc
     2941 tcggttattt ttggcctctt ctacagtatg gtaggctggc gtggcatgtt cctgattggc
     3001 gccctgcctg ttgtcttgct gccttatatc tggtttaaag tgccggaatc ccccgtctgg
     3061 ctggcggcca gagcgcgtaa agagaatacc gcgctgcttc ctgttctgcg caaacagtgg
     3121 aagttgtgtc tgtatctggt gctggtcatg gcgttcttta actttttcag tcacggcacg
     3181 caggatctct atcctacctt cctgaagatg cagcatggtt ttgatccgca tctgatcagt
     3241 atcattgcaa ttttttataa cattgccgcc atgctcggcg gtattttcta cggtacgcta
     3301 tcggaacgta ttgggcgtaa aaaagcgatc atgatcgccg cctttcttgc gcttccggta
     3361 ctcccgctat gggcattttc cagcggatca ttcacgattg gtctgggcgc gttcctgatg
     3421 cagtttatgg tgcagggcgc ctggggtgtc gtgccgacct ggctgaacga gctggttccg
     3481 gcgaatgcgc gcgccgtgct gccagggttt gtttaccaac tcggtaattt actggcgtcg
     3541 gttaatgcga cgttacaggc ccgcatcgcg gaaacgcatg gtggcaatta cgggttggca
     3601 atggcgatcg tggctggcgc ggtggctatt ttaatctgtg tatttgtggc atttggtcgc
     3661 gagacccggg gagtcgtcat ctccggtaca gatagcgacg ccctcccgga gtcggccatc
     3721 ggtcatcgca cgtaaacact acgctcctgg cgcatactgt cgccgggagc gctccttcct
     3781 cctgtggttt ttacgccctt tcaacgaaca acaaaggtta atgatggcat ctgcctttcg
     3841 tgaccattac aatcatcgct tacttttttc tttataagaa attgattgtt ggaccttaaa
     3901 attgtcaacg gagcgaagat atcatgttga aagataacca aaaacacaac gagtctgttg
     3961 ccccgaatag cgcctttctg tctgagttac aacgtgcatt accggaattt tttatcgccg
     4021 atcgctataa cgagcagggc gaactgatcg cgaaaggcgg atttgatctc gccaaatttg
     4081 agcgcgcgct gaaagcgcgt aatattgatg agctgactag cggttatcag attgatttta
     4141 ttggcaaaga ttacgcaaaa aaacaggcgg gtgaaaaatc cgttaccgtt atcgttcctg
     4201 acgtggaaca caatactctg gcagaaaata aaaacagcca taatcttttt ctgaccggag
     4261 ataatctgga tgttttacgc catctgcaaa ataattacgc cgataccgtc gatatgatct
     4321 atatcgatcc cccttataac accggatcgg acgggtttgt ctatcccgat cattttgaat
     4381 atagcgatcg ggcgttgcag gatatgtttg gtcttaatga taccgaactg gcacgtttaa
     4441 aatccattca gggtaaatcg acgcactccg cgtggttatc tttcatgtat ccgcgtcttt
     4501 tcctggccag gaagctcctg aaagataccg ggtttatttt tatctctatc gacgataatg
     4561 agtacgccaa tcttaaatta atgatggatg agatttttgg cgaaggcgga tttgtcacca
     4621 atgtgatgtg gaagcgcaaa aaagagattt ctaacgactc tgataacgtt tccatccagg
     4681 gggaatacat tcttgtttac gccaaaaccg gtcagggcgc tttacgttta gaaccgcttt
     4741 ctaaagagta tattcagaaa tcctataaag aaccgaccga acagtttcca gaagggaaat
     4801 ggcgaccggt gccgttaacg gtgtcaaaag ggctgagcgg cggcggctat acctataaaa
     4861 ttaccacgcc gaacggtacg gtacacgaaa gactatgggc ttatcctgaa gccagttacc
     4921 aaaaactggt ggccgataat ctggtctatt ttggcaaaga taacggcggt attccccagc
     4981 gagtcatgta cgcgcatcac agtaaagggc agccaacgac caattactgg gataacgtag
     5041 cgtcgaataa agaggggaaa aaggagattc tggatctctt cggcgacaac gtttttgata
     5101 cgccgaaacc gaccgcatta ttgaagaaaa tcatcaagct cgctatcgat aaagacggcg
     5161 tcgttctgga cttttttgcc ggttccggca ccacggccca tgcggtgatg gcgctgaatg
     5221 aagaagatgg ggggcagcgc acgtttattc tgtgtactat cgatcaggca ttaagcaata
     5281 acactatcgc gaaaaaagca ggttataaca ctattgatga aatcagccgc gagcgaatta
     5341 cacgcgttgc ggcgaagatc cgcgccaaca atcccgcgac caatagcgat ctcggtttta
     5401 aacattatcg ttttgccact ccgacacagc agacgctgga cgatctggat agcttcgata
     5461 ttgctaccgg ccattttatc aataccagcg gtcaactggc cgctttcacc gagtcaggat
     5521 ttaccgacat gatcaatcct ttttccgcca gaggattggg cgtgccgggc ggcgcaagcg
     5581 gcgaagagac cttattaacg acatggctgg tcgccgatgg ttataaaatg gatattgacg
     5641 tacagaccgt tgatttttcc ggctattgcg ccaggtatgt tgataatacg cgcctgtatc
     5701 tgattgatga acgatgggga acagagcaga cccgcgatct tctcaaccac attggtacgc
     5761 accagcttcc ggttcagacc attgtcattt acggctactc tttcgacctt gaatccattc
     5821 gtgaactgga aatcggctta aaacagcttg atcaaaaagt gaacctggtg aagcgttatt
     5881 aagaggggat gatgatgaat attttgctgg aagaacttcc ccatcaggaa caggcgttag
     5941 cggcgattct ggcgagtttc accggtatcg atcacgcgca ggccgatcat aatcactatg
     6001 ctaatccgct gattaaggga cgttacgacg ataaggccaa tattgacgtt aaaatggaga
     6061 ccgggacggg caaaacctat gtctatactc ggttgatgta tgaactgcat cagaagtatg
     6121 gcctcttcaa atttgtgctg gtggtgccga cgccagccat taaagaaggc gcgcggaact
     6181 ttatcaccag cgattacgcc agacagcatt tttcacagtt ctacgaaaat acgcggatgg
     6241 aattttgcac catcaacgcc ggtgatttta aagtaaagtc ggggcgtaaa aattttccgg
     6301 cccagttatt aagttttact gatgccagcc gtcgtgatag ccatacgatt caggttttgc
     6361 tgatcaatgc gcaaatgctc aattccgcca gtatgacgcg agacgattac gatcaacgct
     6421 actgggcggg ctgacgtcgc ctgttaaagg gctgcaaatg acgcgaccgg tggtcattat
     6481 tgatgaaccg catcgttttg tgcgagataa caaattttat cgagcgattc aggccattca
     6541 gccgcaaatg atcgtccgct ttggcgctac cttcccggat attgtcgaag gtaagggtaa
     6601 aaataaatgt gtacgtaaag attactatcg ccggcaaccg cagtttgatc tcaacgcggt
     6661 ggacagtttt aacgatggtt tggtgaaagg tattgatatt tattacccga atctccccga
     6721 agaacaggcc aacaatcgtt atatcgttga cagcgtcacg gcaaagaaat taatcctccg
     6781 acgggggagc aaaattgccg aggttggcgt gggcgaaaat ctcgccgatg tcgatgcagg
     6841 atttgaaggc agtatcgaat atgccggcag taaaatgttg tcgaacgatc tggagctgga
     6901 ggcagggatg gcgctggtgc caggaacctt tggcgcgagc taccaggaac tgattattca
     6961 ggacgctatc gataagcatt ttgacactga gcaggcaaat ttcttacgca gcaatgagcc
     7021 agaaaataat gccccgcgta ttaagacctt aagctttttc tttattgaca gtattaaaag
     7081 ctatcgtgat gacgaaggtt ggttgaaact gaagtttgag tgtttactga aaaagaaact
     7141 gacgcaactg attgacgatt atcagcgcaa gaccctgccg cgagaagtgg agtatctgtc
     7201 gtttctgcag gccacgctcg ccagcctgca ctcggataac caaaacgtcc acgctggtta
     7261 ctttggcgaa gaccgcggaa gcggcgatga ggcgatccag gctgaggtag atgatattct
     7321 gaaaaataaa gagaagttgc tcagtttttc agaccatcac ggcaactggg aaacgcgccg
     7381 ctttctgttt tcaaaatgga cgcttcgcga aggctgggat aacccgaatg tttttgtcat
     7441 tgctaaatta cgttcttccg gtagcgagtc gagcaaaatt caggaagtgg ggcgcggcct
     7501 gcggctaccg gtagatgaaa acggccatcg cgttcatcag gaagagtggc cgtcccgact
     7561 gtcgtttctg attggttatg atgaaaaagc gtttgccagt atgctggttg atgagattaa
     7621 tcgcgacagc aaagttcagc ttaacgagca gaagctggat gaggcgatga tcacactcat
     7681 cgtcaccgag cgacaaaaag tcgatcctgc gtttacggag cttcgtttgc tggaagatct
     7741 ggatgataaa aaactgatca accggagtaa tgagtttaaa cccagcgtca cgcttaacgg
     7801 ggaaaccaaa agtggctttg cgtggctact ggagttctac cctgagctga cgcaggcgcg
     7861 ggtgcgagcg gatcgcattc gtgacaataa gcccgcctcc cgactgcgag tcaggttacg
     7921 caaagagaat tgggaacaac ttagcagtat ctgggagcag ttttcccgcc gttatatgct
     7981 gcaattcgag cgtagcggcg cttctctgga acagattgcc gccgaggtgc tgcgcgatcc
     8041 gtcgctgtat atacgccaga agccaagcca ggtgcaacaa cggctggtat cgaatgaaga
     8101 taatggccgt tttgaagtgg cgcagcggga aggcgaatta gccgccagcg aatttatggc
     8161 gggcatgaaa tatggccatt ttcttaagca actggcgtta cgcaccagtc tgccgattaa
     8221 cgtcctgcac ccggtgttaa tggcgatgct gcgtgatgtt ttgcacggag attcacgcta
     8281 tttaagcgag atctcgttgg acaatatgac ccgcgcatta cagacgcgga ttaatgcgca
     8341 ttttgcgcag cgccacgatt atctgcctct cgattttcag gcttcaacgt cggtatttga
     8401 ttctacggca cggcagttca gagaggagat tagcgctgaa attgtgggga aaaatgtgga
     8461 tgagaatgcg atagacgatc cccgttctct ctatcaaata ccgccgttgc gttatgacag
     8521 cgtcgatcca gaattgccgc tattaaaata cgattatccg caacaggttt ctgtgtttgg
     8581 caaactgcct aagcgggcca ttcagatccc caaatatacg gggggctcta ctacgccgga
     8641 ttttgtgtac cgtattgagc gtcaggacgc cgacagtgtt tatttactgg ttgaaactaa
     8701 agcagaaaat atgcgcgtag gcgatcaggt tattcttgat gcgcaacgta aattcttcga
     8761 tatgctgcgt cggcaaaata tcaatgtcga gtttgcggaa gcgaccagcg cgccggcggt
     8821 attttctacc atcaatggct tgattggggg gaaggcaaac taacgggttt gaatagacct
     8881 taacggttat ctttttgata ggccatataa aatggccgcc gcgcagcgag cgttgcggtc
     8941 attctcctgt gctaatcccc cgtcccgtaa accgcgttga cttgaaggtt atcgttttac
     9001 gtctattctt aactttcagc taagtgtatt ttgctgaaat tgcaaatagt cttgaagacg
     9061 ctgttttttt gttttgccgt tatttttata acggccaggt agatattgcc aagtgaatgt
     9121 aactaaggga gacatgttat gctaaataga tactaccgtt tcgctgtcga aaaagacgac
     9181 ccctccgaag cgccagagtc gggcgataag cctgacagcc agccgcaaaa aaaatcgtaa
     9241 tttatctgga tattccccga cgtttttacg tttggggaaa ataaccgttt cgtttcaacc
     9301 tggttgcgaa cagtgaatat tttacacgaa gtgactatat aaacgggagg gaacatggag
     9361 tttgatgcat tctttttagc gagactccag tttgccttta ccgtctcttt tcatattatt
     9421 ttccccgcga ttacgattgg cttagccagt tacctggtgg tactggaagg tttatggcta
     9481 aaaacgcgta atcctgtctg gcgctcgctc tatcagttct ggctcaaaat ttttgccgtc
     9541 aacttcggga tgggcgtggt ctccggtctg gtcatggctt accagttcgg aacgaactgg
     9601 agcggttttt cccagttcgc cggcagtatc accgggcctt tattaaccta tgaagtgctc
     9661 accgcattct tcctggaagc gggattctta ggcgtgatgc tttttggctg gaacaaagtc
     9721 gggccgggcc tgcatttctt gtctacctgt atggtggcgt tgggcacgtt aatgtcgacg
     9781 ttctggattc tggcgtctaa tagctggatg cataccccgc agggatttga aattcataac
     9841 ggtcaggtag tcccggtgga ctggttcgcg gtgattttca acccgtcgtt cccgtatcgc
     9901 ctgttgcata tgtccgttgc ggcgttttta agtagcgcga tgtttgtcgg cgcgtccgca
     9961 gcctggcatt tactgaaagg taacgatacg ccggctatcc gccgtatgtt ctcgatggcg
    10021 ctatggatgg cggtcgtggt ggcacccgtt caggcattga ttggcgatat gcatggcctt
    10081 aacaccctga agcatcagcc ggtcaaaatc gccgcgattg aggggcactg ggaaaatacg
    10141 cccggcgagc caacgccgct tacgctggta ggctggccgg atatggaggc ggaacggacc
    10201 cgctatgcgc ttgagatccc ggcgttgggc agtctgatcc tgacgcatag cctggacaaa
    10261 caggtgcctg cgctaaaaga ttatcccaaa gaggatcgcc ccaaccctac cgtggtgttc
    10321 tggtctttcc gtctgatggt gggcatgggc gtactgatga tctttctggg gctggccagc
    10381 ctgtggctac gctaccgacg ccgcctgtat cattcgcggc cctttatgca ctttgcgctg
    10441 tggatggggc cgtccgggct tatcgccatc cttgccggat gggtgacgac tgaagtagga
    10501 cgtcagccgt gggtggtcta tggcctgctg cgaacgcgtg atgcggtttc cgcgcacagc
    10561 accttgcaaa tgagcatcag tttgctggcc ttctttgtgg tctattccct ggtgtttggg
    10621 gttggctata tttatatgat tcgtcttatc cagaaagggc cgcagccggc ggagacaccg
    10681 accgctgaaa ccgatggcag acccgcgcgt cctatctctg ccgtgggaga atcgcttgag
    10741 caggagaaac gcgaatgacc atcgatcttc cggttatctg gtttgctatt atcgtgttcg
    10801 ccacgctgat gtatatcgtg atggatggtt tcgatctggg cgtcggtatc ctgtttccgt
    10861 ttattcgtga taaacacgat cgcgatgtta tggtgaactc ggtcgcgccg gtatgggacg
    10921 ggaacgaaac ctggctagtg ctgggcgggg ccgggctttt tggcgcgttc ccgttggctt
    10981 atgccgtcat caccgacgcg ctgactatcc cgctggtggt tatgctgctt ggtcttatct
    11041 ttcgcggcgt cgcttttgaa ttccgtttta aagccaccga gtcgcatcgc gcgttctggg
    11101 ataaatcctt tatcgtcggg tcaatcctgg cgacctttgc ccagggggtt gtggtgagcg
    11161 cggtggtgag cggttttcag gtggaagggc gaacctttag cggttcgcag cttgactggc
    11221 tgacgccgtt taatctgttc tgcggcgtcg gtctggtcgt cacctacgcg ctgctgggcg
    11281 ctacctggct gattatgaaa agcgaagatc cgctgcatag ccggatgtgc gcgctgtcgc
    11341 gcccgttgtt gatcgtcttg ttgctggtga tggggggcgt cagcgtgtgg acgccgctca
    11401 cccatgacga catcgccgag cgctggttca cgctgcccaa tttatactac ttcctgccgg
    11461 tgcctgtgct ggtgttggct tttagcgtct ggctatggcg cagcgtgaaa aaaccacaat
    11521 cccatgcgcg tccatttatt ctcacgctag ggctgatttt tctggggttc agcgggttag
    11581 gaatcagtat ttggccgaat attattccac cggatatttc gctgtatgcc gccgccgcgc
    11641 cgtcgcaaag tcaaagcttt atgctggttg gggcgctgat aatcatcccg attattctgg
    11701 cttatacctt ctggagctac tacgtcttcc gtggaaaagt gcgacatgga gagggatatc
    11761 actgatggtt aaagtgaaaa aatggtcgcg gcgagtcgta tggatggtcg cgatatggtg
    11821 cgccagcgtg cttctgctgg cgggcgtcgg aatgttgttc agactgctca tgacctccgc
    11881 aggatttcgc tcctgactga tacccccgga cgcgctttcg tctctcgcga aagcgcgttt
    11941 ttatcgacag atcggcgttt atcgatcacc tttgctcgcc ttatctctcc cctcaatagc
    12001 ggttgataat tattctcatc tttattgtcg ttcccgggcc gcagtgatat ggttacacag
    12061 tggctaacgc tctggtataa cgcagataaa cggtattgat aatgtctccg atctcctgtc
    12121 actcttccgc cgccccggcg atgaaaaaga tcttttccgt cagcgacttc atcgcgtttg
    12181 gcgagcgtta tggcattgat taccgcttcc ctgcgttacc gcagtatacg cagagtagtc
    12241 ccgtacttca tggcgatatc gaagagatag cgcttcccgg cgggatttgc attacacgct
    12301 cggatgttca cgtgttacaa ccttatgaaa ccacctctcg ccatagcagt ccgctgtata
    12361 tgctggtggt gttggaaggt aacgtcgcgc tggctgtcaa tgagcagacc tttttgttga
    12421 gcgcggggat ggcgttttgc tcgcaactga gtgagcagca gacgatacgc gcccatcacg
    12481 gcgcagacag taaattgcgc accttatcgc tgggaatgta cccggacggc gggtggcggg
    12541 agcgtttgcc tgtctcgctg gcagacgagt gggaacgtag cgcggcctcg gcgagggtct
    12601 ggcaggtgcc ggagtttctg ctttcggggc tacgttatgc gcagcagccc ggacctcatg
    12661 cggcgtcacg ccagttaatg ctggaaggca tcatgctgca attgctgggc tatgcgttaa
    12721 atctatgtca gcccgcaacg caaaaacgcg gacttcccgt caccggtgaa taccagcggc
    12781 tggagctcat tcggcgttta ctggagcaaa cgccggaaaa agcctacacg ctgaacgaac
    12841 tggcgcgtcg ggcggcaatg agtccgagta gcctgcggtg caagtttcgc catgcctatg
    12901 ggtgtaccgt gtttgattat ctgcgcgatt gccgcctggc gcgcgcgcgt cgttatctga
    12961 tggagggata cagcgtgcag caggccgcct ggatgtcagg ctatcaacat gccactaact
    13021 ttgcgacggc atttcgtcgg cgttatggct gctcgcccgg cgagctgcgt gacgcgtctc
    13081 tgacggcgtc ccgccactgt gcgtaacgcg ccccgccaga gcggtaatat ccgccgctaa
    13141 cccggttttc tgccgctttg ggtgattttt tatcattgcg cataggcaat ctggcgttac
    13201 gcatagtggt tcgttatctc taaagggtaa taattcttat ttacaataaa gatgcctttg
    13261 gagatgttca tgtttgcgac aacgcgtatg gcgctattga taggcggagc tatcggcggc
    13321 gcgacttttc ctctttttgc ccaggaaacc acaaaaaatg ataccgtcat tgtcacctcg
    13381 cccgttcaga gtggcgcgac caggctggcg acgccagata ttgaaacgcc gcagtcggta
    13441 tccattatta cccgccagca gtttgaagag cagggcgcaa ccagcgtgcg tcaggcggtc
    13501 agctacaccc caggcgtata cagtaaccag ataggcgcct ctaaccgctt tgattacatc
    13561 gtattgcgtg gtttttcgga cggtagtctg gataacgtct atctcgacgg gttaaaaatg
    13621 atgggcgaca ccaattcgca cagttcgttg gtggttgacc cctggtttct ggaagatatc
    13681 gaggtggtac gcggcccggc gtccgttctg tatggacgtt catcgccagg cggcattgtc
    13741 tcgttgacgt cgcgaaaacc ggcgtttgat gccggaggag aagtgaagct gtttgccggc
    13801 aataacaacc agcgcggggc ggcttttgat gtgaccggcc cactggatga caatgaacgt
    13861 gtggcggcgc gtcttagcgg catgacacgt tacgccgatt cgcagtttac gcccctgaaa
    13921 gaggaacgtt atgcgctgat gccgagcctg acctggagaa ttaccgatcg gacgcgtctt
    13981 gatcttatgg cctatctgca ccgtgatccg caaggcggta gccactccgg actgccttat
    14041 caaggcacgg ttgtacctta taacggcgga aaaatttcta acactttctt tgaaggtgaa
    14101 gatgactacg acaaatacga tcgccgtgaa aatatggtgg gttataacat tgagcatctg
    14161 ttcgataacg gctggtcggt acggcaaaaa ttgcgttatt tgcataccaa agtgacgttg
    14221 aatcaggtct atgccgcagg ttggttgaat gaaacggcgc tgaatcgcgg ctattccggc
    14281 tccggggaga aaatgtcggc tatcgcgctg gataatcagc tcgacggcag cgtggatacc
    14341 ggggcgatta atcatcgtct gctggtgggg atcgattatc aggatcgcag taatcatact
    14401 actggctatt atggcgcgtt tccgccgatt gacgctttca accctgttta tggcgctcag
    14461 ccggattaca ttacgttgta tagccgtgaa aaacataagc tgcggcagac cggatactat
    14521 ttacaggatc agatgtcatg ggatcgctgg cgctttacgt tgggcggtcg ttacgatcgg
    14581 gtcagcgtgt ctaacatcga caaacttcat gattcacgca gcgatctcga taaaaacaac
    14641 gtcagcaccc gtgccgcgtt gctttatctg ttcgacaatg gcgtcgcccc ctatctcagt
    14701 tattctaccg cgtttacgtc gaccagcttc gccgacgaaa acggcaatgt gctggaaccg
    14761 atgaaaggca agcagtggga ggcgggggta aaatacgaac cgctgggggg gaacagccag
    14821 tttagcgccg ccgtgtatcg tattaaccaa accaatatcg cgaccaaaga agaacctacc
    14881 gatccgtacc gctcgattgg tgaaattgag tctaaagggg ttgaactgga ggccattagc
    14941 catttgtcgg atagcgtccg tttgcaggcg gcgtatacct atactgatat ccgttataag
    15001 aaaagtagcc cgcaagagca ggggaagcgc gcggtttatg ctccacggaa ccaggccagc
    15061 gcctggctaa gctacgatgt gaaaagcggt ctgttagagt ggctgacttt gggctccggc
    15121 atccggtacg tcaacggcgt gaccagcgat cgcctgaata cccacacgtt gccgtcctat
    15181 acactggtcg acatggtggt tgggtatgat ttatccagca ttgggttaaa tggcttgagc
    15241 gcccagctca acgtaaataa tctgacggac aaacgctatg tcgctgcctg taattcgctc
    15301 tcttattgtt attttggcgc cgagcgtagc attgtaggca gcgtgtcatg ggcgttttga
    15361 taacgcttat cgtccggtag caaaggctac cgggcaaaca ttagcggtgc gtcatgcctt
    15421 catagagaag tctgagcgca aacatcccga taatggcgcc gataacacgg ctggcaatgc
    15481 gctgtattcg tccataagcg cggcggactg cggggagcga aaaggcctgg ctgagaaaaa
    15541 tacgccagat aacggatgac agcacaattc cggcccaggc cattaacctt gcccatgtgg
    15601 gcgtttctgc gctaagcgtt acggaaaaaa tactgataaa aaacagtacg gtttgcggat
    15661 tggataaatc ggtcattaat ccccggcgaa agaaaattgt ccacggggcg gcaatcggcg
    15721 tctggagcgt gctcatttgc ggcgtcgcct ggtggcgaat actgttccag gcgaaccata
    15781 ataaataggc gccgccgaca attttgataa gagaaaatac cgcttcgcat tgcgtaatga
    15841 gcgtcgccag accgaaaagc cccagcccgg aataaaaggc gtctcccgtg gcgacgccca
    15901 ggccggtgat gactcccgcc cggcgtcctg atgcgaggct ggtttgcacc accacaaaca
    15961 gattcgcgcc gggattaaaa aaggttaaca caaacagact gacggtaagc acaacggcat
    16021 gaaacggctc catagacaac tcttcccata gcctcaagaa ataacgttca tcttattaat
    16081 agtcaaacca gatgattgcg agtgagatca caaagcaggg gcgttttaat ccgcgtcgtt
    16141 atgccgagtg agcgggggct gactggattt ttccagcaat ctacactact tatttaatca
    16201 gtccgaacgg cctttttgtt ctgataaagc gatgatggcg taataataaa acgagggttt
    16261 tgctatgaaa actggctaca aggttatgct tggcgcatta gcgtttgtcg tgacaaacgt
    16321 ttatgccgca gaaatcatga aaaaaacgga ctttgataaa gtcgcctccg aatacacgaa
    16381 aattggcacg atttccacca ccggggaaat gtcgccgctg gacgccagag aagatttaat
    16441 caaaaaggc
//
LOCUS       DAJVSD010000084        16276 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.084, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000084 DAJVSD010000000
VERSION     DAJVSD010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 16276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16276
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.084"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            77..811
                     /locus_tag="OQP62_002193"
     CDS             77..811
                     /locus_tag="OQP62_002193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001520921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCS1721736.1"
                     /translation="MNSSFRDKDHQIEGHGSPDVYSQIWLLKIRYGLTDRLELSTVGS
                     YINNKRDNLSPEHIEGMSDQSVGVNYALMSQRRGDPFWVTVGGAVLLPTGQDGDNHLP
                     GNSAWGGRVTLTLTKLFTPNIKGDMGFVYQGPFERGNQDVKRGNEFQWNTQVRYMFSD
                     LPLDLGLESAYSNNASGTKKLSNGSVINNHSGTTEWVVGPSFNIAVDSLKLWFGAGAF
                     FPVMQEAKSPTKMEDVRWEFKIGKTW"
     gene            complement(859..2292)
                     /gene="bglA"
                     /locus_tag="OQP62_002194"
     CDS             complement(859..2292)
                     /gene="bglA"
                     /locus_tag="OQP62_002194"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase BglA"
                     /protein_id="HCS1721737.1"
                     /translation="MRKLTLPKDFLWGGAVAAHQVEGGWNKDGKGPSICDVLTSGAHG
                     VPREITQNVVAGKYYPNHEAVDFYGHYKEDIRLFAEMGFKCFRTSIAWTRIFPNGDES
                     QPNEAGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQHYGGWTNRKVVDFFVRFAE
                     VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFV
                     ASTLAVKAARRINPQMKVGCMLAMVALYPFSCKPEDVMFAQESMRERYVFTDVQLRGY
                     YPSYVLNEWERRGFNIKMEDGDLEVLREGTCDYLGFSYYMTNAVKAEGGSGDAISGFE
                     GSVPNPYVKASDWGWQIDPVGLRYSLCELYERYQKPLFIVENGFGAYDKVEEDGSIND
                     DYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGLIYVNKHDD
                     GTGDMSRSRKKSFNWYKEVIASNGEKL"
     gene            2451..2762
                     /locus_tag="OQP62_002195"
     CDS             2451..2762
                     /locus_tag="OQP62_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HCS1721738.1"
                     /translation="MQPNDITFFQRFQNDILAGRKTITIRDASESHFKAGDALRVGRF
                     EDDGYFCTIEVTGTSTVTLDTLNEKHAQQENMSLDELKRVIAEIYPNQTQFYVIDFKC
                     L"
     gene            2926..3585
                     /locus_tag="OQP62_002196"
     CDS             2926..3585
                     /locus_tag="OQP62_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HCS1721739.1"
                     /translation="MVQKPLMTQGYSLAEEIANSISHGIGLVFGIVGLVLLLVQAVEA
                     NAGMTAIASYSLYGGSMILLFLASTLYHAIPHQRAKIWLKKFDHCAIYLLIAGTYTPF
                     LLVGLDSPLARGLMIVIWSLALFGILFKLTIAHRFKVLSLVTYLAMGWLSLIVVYQLA
                     IKLAIGGVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYVGQ
                     A"
     gene            complement(3701..4681)
                     /gene="ygfZ"
                     /locus_tag="OQP62_002197"
     CDS             complement(3701..4681)
                     /gene="ygfZ"
                     /locus_tag="OQP62_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-modifying protein YgfZ"
                     /protein_id="HCS1721740.1"
                     /translation="MAFISFPPRHPSSSARLPLTLIALDDWALSSITGVDSEKYIQGQ
                     VTADVSQMTEQQHLLAAHCDAKGKMWSTLRLFRERDGFAWIERRSVREAQLTELKKYA
                     VFSKVVIAPDDERVLLGVAGFQARAALANVFSELPNSENQVVRDGASTLLWFEHPAER
                     FLLVTDVATANMLTEKLHGEAELNNSQQWLALDIEAGIPVIDAANSGQFIPQATNLQA
                     LGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGKASRVPEAGEDLELQMGENWRRT
                     GAILAATQLDDGQLLVQAVMNNDLEAESVFRVRDDANTLHIVPLPYSLEE"
     gene            4931..5197
                     /gene="sdhE"
                     /locus_tag="OQP62_002198"
     CDS             4931..5197
                     /gene="sdhE"
                     /locus_tag="OQP62_002198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000354044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD assembly factor SdhE"
                     /protein_id="HCS1721741.1"
                     /translation="MDIHNKARIHWACRRGMRELDISIMPFFEHEYDSLSDEEKRIFV
                     RLLQSDDPDLFNWLMNHGKPADAELEQMVRLIQTRNRERGPVAI"
     gene            5178..5579
                     /locus_tag="OQP62_002199"
     CDS             5178..5579
                     /locus_tag="OQP62_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YgfX"
                     /protein_id="HCS1721742.1"
                     /translation="MVLWQSDLRVSWRAQWISLLLHGLVAAVILLMPWPLSYTPLWMI
                     LLSLVVFDCVRSQRRINTCQGEIKLLMDGRLRWQGQDWTLLRPPWLLKSGMVLRLRAE
                     SGRHQHLWLAADSMEEAEWRELRRILLQQPI"
     gene            complement(5644..6165)
                     /gene="fldB"
                     /locus_tag="OQP62_002200"
     CDS             complement(5644..6165)
                     /gene="fldB"
                     /locus_tag="OQP62_002200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldB"
                     /protein_id="HCS1721743.1"
                     /translation="MNMGLFYGSSTCYTEMAAEKIRDILGPELVTLHNLKDDAPALME
                     QYDVLILGIPTWDFGEIQEDWEAVWEQLDDLNLEGKIVALYGMGDQLGYGEWFLDALG
                     MLHDKLALKGVKFVGYWPTEGYEFTSNKPVIADGQLFVGLALDETNQYDLSDERIQTW
                     CEQILGEMAEHYA"
     gene            6278..7174
                     /gene="xerD"
                     /locus_tag="OQP62_002201"
     CDS             6278..7174
                     /gene="xerD"
                     /locus_tag="OQP62_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HCS1721744.1"
                     /translation="MEQDLARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRG
                     KTLATAQADDLQTLLAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLAS
                     PKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI
                     SLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQM
                     TRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTT
                     QIYTHVATERLRQLHQQHHPRA"
     gene            7198..7911
                     /gene="dsbC"
                     /locus_tag="OQP62_002202"
     CDS             7198..7911
                     /gene="dsbC"
                     /locus_tag="OQP62_002202"
                     /EC_number="5.3.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional protein-disulfide
                     isomerase/oxidoreductase DsbC"
                     /protein_id="HCS1721745.1"
                     /translation="MKKRFMMFTLLAAAFSGVAHADDAAIRQSLAKLGVQSTEIQASP
                     VAGMKTVLTHSGVLYVTDDGKHIIQGPMYDVSGAHPVNVTNKLLMSQLNALEKEMIVY
                     KAPDEKHVITVFTDITCGYCHKLHEEMKDYNALGITVRYLAFPRQGLESQAEQDMKSI
                     WCAKDKNKAFDDAMAGKGVKPASCDVNIADHYALGVQLGVSGTPAIVLSNGYVVPGYQ
                     GPKEMKAFLDEHQKQTSGK"
     gene            7917..9650
                     /gene="recJ"
                     /locus_tag="OQP62_002203"
     CDS             7917..9650
                     /gene="recJ"
                     /locus_tag="OQP62_002203"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HCS1721746.1"
                     /translation="MKQQRQLRRREADETAELPADLPPLLRRLYASRGVRSARELERS
                     VKGMLPWQQLSGIDNAVEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDN
                     ISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTVDNGISSHAGVAHAKTLRIPVIVTD
                     HHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERGIA
                     PPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIRAGKCRPGIKALLEISNRDPQ
                     QLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEARVLASELDALNQTRKEIEQ
                     GMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG
                     DGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLSLEEHKFEQFQQRFG
                     ELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFPEPLFDGRFRLLQ
                     QRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPDNGVREVELAYKLDINEFRGNRS
                     LQIIIDDIWPL"
     gene            9755..10853
                     /gene="prfB"
                     /locus_tag="OQP62_002204"
     CDS             join(9755..9829,9831..10853)
                     /gene="prfB"
                     /locus_tag="OQP62_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311790.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HCS1721747.1"
                     /translation="MFEINPVNNRIQDLTERTNVLRGYLDYDAKKERLEEVNAELEQP
                     DVWNEPERAQALGKERSSLEAIVDTLDQMTQGLDDVSGLLELAVEADDEETFNEAVAE
                     LNTLEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLLRMYLRWAEARG
                     FKTEVIEESEGEVAGIKSATIKISGEYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFS
                     SAFVYPEVDDDIDIDINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQN
                     DRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDTKSDIGWGSQIRSYVLDDSRIK
                     DLRTGVETRNTQAVLDGSLDQFIEASLKAGL"
     gene            10863..12380
                     /gene="lysS"
                     /locus_tag="OQP62_002205"
     CDS             10863..12380
                     /gene="lysS"
                     /locus_tag="OQP62_002205"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HCS1721748.1"
                     /translation="MSEQNAQGADEVVDLNNEMKARREKLAALREQGIPFPNDFRRDR
                     TSDQLHAEFDAKEAEELEALNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARD
                     DLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGL
                     QDQEARYRQRYLDLISNDESRNTFKTRSKILAGIRQFMVARGFMEVETPMMQVIPGGA
                     SARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFT
                     MMELYMAYADYKDLIELTESLFRTLAQDVLGTTQVPYGDEVFDFGKPFEKLTMHEAIK
                     KYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFDEVAEAHLIQPTFITE
                     YPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVNAKAAG
                     DDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPVK"
     gene            complement(12456..13001)
                     /gene="idi"
                     /locus_tag="OQP62_002206"
     CDS             complement(12456..13001)
                     /gene="idi"
                     /locus_tag="OQP62_002206"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HCS1721749.1"
                     /translation="MTEEHVVLLDEQDKPSGTLEKYAAHTLNTPLHLAFSCWLFNEDG
                     QLLVTRRSLSKKAWPGVWTNSVCGHPQQGETTEEAIIRRCRFELGVEITDLTPVYPHF
                     SYRATDPNGIVENEVCPVFAARATSVLQVNSEEVMDYQWSEFKSVWQSLLATPWAFSP
                     WMVMQASDEQARKRLLNYCQR"
     gene            13266..14024
                     /locus_tag="OQP62_002207"
     CDS             13266..14024
                     /locus_tag="OQP62_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HCS1721750.1"
                     /translation="MVLSAGRLNKNSLGIAVLLCTGLLLAGCSSNSGSGTYSGSVYTV
                     KRGDTLYRISRATGTSVKELARLNGISPPYTIEVGQRIKVRGSAKSSSSTRKTSNKTA
                     TKTAAVRPSSSVPKSSWPPVGQRCWVWPANGKVILPYSTAEGGNKGIDIAGARGTPVY
                     AAGAGKVVYVGNQLRGYGNLIMIKHNEDYITAYAHNDTMLVNNGQSVKAGQKIATMGS
                     TDAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC"
     gene            14104..14177
                     /locus_tag="OQP62_002208"
     tRNA            14104..14177
                     /locus_tag="OQP62_002208"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:14136..14138,aa:Gly,seq:ccc)
     gene            14312..15931
                     /locus_tag="OQP62_002209"
     CDS             14312..15931
                     /locus_tag="OQP62_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000935132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS1721751.1"
                     /translation="MLNSKTYLYQRNGVFYIRLRMKSTDRLTVSHPSHSRYKIASVSL
                     RTKDRRTAMAYSRHIKAALRAIHADRPNASYEEMREHLRDIAEWELSTGRSDLFEPDM
                     RDLYRDQYGEVGENLVHSEPLTIDQHRYINEALNVLKACMKRIEAGDSQPLIDYIDGF
                     DAAAGANDQASATLSVSAPQKTSITEGKHCVTVASLFEQYEQENAQNWKPATLRENKA
                     SHAALIEVFDYLGLNADANVLARADMLRVRDILQQLPKNRKQRFKDVPLVDLLGREDK
                     TDCLDIVTINNKYLIKMAAVFKWAVRNDLIKKNMTEGLELKVPQRKASEARNAFSTEQ
                     VGQLLAAAQVYSQRPSGKPYHYYVTALAAITGARLNEIAQLQVKDVRTTEAGTVYIHI
                     NEDDSSLPGKSIKNAHSDRCVPLVDGAYGFILADFMRLVETRRGADGDDAMVFDGLRL
                     MKNGYGEQVSKWFNRTLLPKVLADRSGLAFHSFRHTVATQLKQHGVELAYAQAIMGHS
                     SGSITYDRYAKEVEVDRLVNVMADVYKEIVG"
BASE COUNT         3958 a         3930 c         4433 g         3955 t
ORIGIN      
        1 taatctatta ggtgcaccag ttaataccgc tatttctggt ggttcagtat tgccggaagg
       61 aaagttatta accgccgtga atagctcatt tcgcgataaa gatcatcaaa tcgaggggca
      121 cggaagtccg gatgtttact cccagatatg gttattgaag attcgttacg gtttgaccga
      181 cagactggaa ttatcaactg tgggttccta tatcaataac aaacgagaca atctgtctcc
      241 tgagcacata gagggaatga gcgaccaatc ggtgggggtc aattatgctt taatgagcca
      301 gcgaagaggt gatccgtttt gggttacggt aggtggggca gtattactac ccaccgggca
      361 agatggagat aatcatttgc ctgggaatag cgcctgggga ggaagagtaa cactcacttt
      421 aacaaaatta tttactccta acattaaagg ggatatgggt tttgtatatc agggaccatt
      481 tgagcgcggt aaccaggacg tgaaacgagg taacgaattc cagtggaata cccaggtgcg
      541 gtatatgttt agcgatttac cgctggatct tggtctggaa agtgcctaca gcaataatgc
      601 ctctggaacg aaaaaactgt ctaatggcag cgtaattaat aaccattctg gaactaccga
      661 atgggttgtt ggtccgtcat ttaatattgc cgtcgattca ctgaaattat ggtttggtgc
      721 cggagccttc ttcccggtaa tgcaggaagc gaagtcgcca accaaaatgg aagatgtacg
      781 ctgggaattt aaaataggta agacctggta agactcgttc aaagtgttac ccgccgactg
      841 gcgggtaacg tgcaggagtt aaagcttctc gccgttgctg gcaatcacct ctttgtacca
      901 gttgaagctc ttcttacgcg aacgcgacat atcgcccgta ccgtcatcgt gcttgttcac
      961 gtagattaag ccgtagcgct tgctgtactg accggtggtg aacgacacgc agtcgatgca
     1021 gccccacggc gtgtagccca tcaggtcgac accatcgtaa gtcaccgctt ttttcatctc
     1081 ttcaatatgg gcgcgcaggt agtcaatgcg atagtcgtcg ttgatgctgc catcttcttc
     1141 tactttgtcg taagcaccaa aaccgttttc gacaataaat agcggctttt gatagcgttc
     1201 gtacagttca cacaatgaat agcgcagacc caccgggtca atctgccagc cccagtcaga
     1261 tgctttaaca taggggttcg gtacgctgcc ttcaaaaccg gaaatcgcat cgccgctacc
     1321 gccttcggct ttgaccgcgt tggtcatgta ataactgaaa ccaagataat cgcaggtgcc
     1381 ttcgcgcagc acttcaagat cgccatcttc cattttgatg ttaaatccgc ggcgctccca
     1441 ctcgttcaac acataggacg ggtaatagcc gcgcagctgc acatcggtaa agacgtagcg
     1501 ttcacgcatc gattcctgag caaacatcac atcttctggt ttacaggaga aaggatacag
     1561 cgcgaccatc gccagcatac agccaacttt catctgtgga ttaatacgac gtgccgcttt
     1621 taccgccagc gtgctggcga caaactgatg atgtaagacc tgatacatgg tttcttctgg
     1681 attctcatgc tcggtataca ccacgccgga acagcagtag ccaaacagcg gcgcgcgcca
     1741 gtttcgctgg ttgttaattt cgttgaaggt catccagtat ttgaccttat gtttgtagcg
     1801 ttcaaacacg acttcagcaa aacggacaaa gaaatcaacc actttacgat tggtccagcc
     1861 gccgtagtgc tgtaccagat gtaatggcat ttcaaagtga gaaagggtga tgaccggttc
     1921 gatgttgtat ttgagtaact catcaaacat gtcgtcgtag aatttcagac cggcctcgtt
     1981 tggctgggat tcgtcgccat tcgggaagat acgcgtccag gcaatagaag tacggaagca
     2041 tttgaacccc atttcggcga aaagacggat gtcttctttg taatgtccgt aaaaatccac
     2101 cgcctcgtgg ttcggatagt atttgccagc aacgacattc tgggtgattt cgcgtggcac
     2161 gccgtgtgcg ccgctggtta gcacgtcgca gatgctgggg cctttaccgt ctttattcca
     2221 gccgccttca acctggtgtg cggcaaccgc gccgccccat aaaaaatctt ttggcagggt
     2281 gagttttctc attgttgcat aatctcaatt tatttagtct gttatcattc attctgcacc
     2341 aagtggcatg taaagcgtac gcaaaattcc aggatgctcg cgtgtcgggg caagaacaca
     2401 ttcagatcgt aacatccact tcaaggggcc atattcaggg ggataaccac atgcagccaa
     2461 atgacattac tttctttcaa cgtttccaga atgacattct ggcagggcgt aaaaccatca
     2521 ctattcgtga tgcctccgag tcccacttta aagcaggcga tgctctacgc gtggggcggt
     2581 tcgaagatga tggctatttt tgcacaatcg aagtgacagg aacgtcaact gtgacgctgg
     2641 atacgttgaa cgaaaaacat gcgcaacagg aaaatatgtc gcttgatgag ctgaaacggg
     2701 tcattgctga aatctatccc aaccagacgc aattttatgt gattgatttt aaatgccttt
     2761 gataaatatg aacgcgtgtt agttgagttt ttgtagttaa tttgttgaat aataaacaaa
     2821 atttaatttt gcgaatttat tttagctaac atgtgttcac tggaaccatt ctcagttacg
     2881 ctagaggtgc agttcatcgt tatgaacgtt tctccggagt aagttatggt gcaaaaacca
     2941 ttaatgacgc agggatattc gctggctgag gaaatcgcca acagtattag ccacggcatt
     3001 ggattggtat ttggtattgt cggcctggtg ctgttgttgg ttcaggcggt agaggcgaat
     3061 gcgggtatga cggctatcgc cagctacagt ttatatggcg ggagcatgat cctgcttttt
     3121 cttgcctcaa cgctttatca tgccattcct catcagcggg caaaaatctg gttaaagaaa
     3181 tttgatcact gcgctatcta tctgctcatt gccggaacct atacgccatt tctgctggta
     3241 ggtctggatt cgccgctggc gcgcggacta atgattgtga tctggagcct ggcgctattc
     3301 ggtatcctct tcaagttgac gattgcgcac cgatttaaag tgctttcact ggttacgtat
     3361 ctggcaatgg gctggctgtc gctgatagtg gtttatcagt tggcgattaa gctggcgata
     3421 ggcggcgtga cgctgctggc ggtaggtggc gtcgtttact cgctgggcgt aattttctat
     3481 gtttgcaaac gcatacctta taaccacgcc atctggcatg gctttgtgct gggcggcagc
     3541 gtgtgccact tcctggccat ctatttgtat gtgggacagg cgtaattccc ggatgcccgt
     3601 gccggatggc ggcgctgtcg taccttatcc ggcctacgag agcagcacgt gcgagcctga
     3661 tggcgttgcg ctatcaggct atccgacttt taacgtgata tcactcttcc aacgagtaag
     3721 gcagcgggac gatatgcagg gtgttggcat cgtcgcgaac gcggaagacg ctttcggctt
     3781 ctaaatcgtt attcatgacg gcctgaacca gtaactgacc atcgtccaac tgtgtcgccg
     3841 ccagaatagc gccggtacga cgccagttct cgcccatctg tagctccaga tcttctcctg
     3901 cttccggtac ccggctggct ttgcccgcca gcaaccaaag cgcgcgttta ttggcgccgc
     3961 ggaattttgc ccgtgcgacc atctcctgtc cggtgtagca gcctttcttg aagctgatgc
     4021 cgcccagcgc ctgtaggtta gtcgcctggg ggataaactg accgctgttc gccgcgtcaa
     4081 tcaccggaat gcctgcttca atatccaacg ccagccactg ttgactgtta ttcagttcgg
     4141 cttcgccatg caacttctcc gttaacatgt tggccgtcgc gacatcggtg acaagcagga
     4201 atcgttccgc aggatgttca aaccatagca gcgtggaggc gccgtctctg accacctgat
     4261 tttcactatt gggcagttcg ctaaagacat tagccagcgc cgcgcgggcc tgaaaaccgg
     4321 ccacgccaag caatacgcgt tcgtcatccg gcgcgatgac tactttggaa aatacggcgt
     4381 actttttcag ctccgttaat tgcgcttcac gcacgctacg gcgttcaatc caggcgaaac
     4441 cgtcgcgctc acggaacagt cgcagagtgc tccacatctt acctttagca tcgcagtggg
     4501 cggcgagaag gtgttgctgt tcagtcatct ggcttacgtc agcggtgacc tggccctgaa
     4561 tatacttttc actgtctacg ccggtaatgg acgacagcgc ccagtcgtca agcgcgatca
     4621 gcgtcagcgg caggcgggct gacgatgagg gatgacgtgg tggaaaggag ataaaagcca
     4681 taaataatgt cctggttagc tgcaacaata atggttaatg gtaaaagagc catcggtcat
     4741 tgcaagtgct ttaaatagcc cattgaaagc ggattgatcg ttttgcgagg tggtatccaa
     4801 aacggatgaa catattgatt cccagccttc tatttcgcga tcgcgttcca gattactgag
     4861 attcccgtaa aacaacgcca aaaacacgtt acaatagccc ggtacttcat tttcgcgagg
     4921 caggaagaac atggatattc acaataaagc acgtattcac tgggcatgtc gtcgcggtat
     4981 gcgcgaactt gatatttcca tcatgccgtt ttttgaacat gagtacgata gtttaagtga
     5041 tgaagaaaag cgtatttttg tccgtttgtt gcagagtgat gacccggatt tatttaactg
     5101 gttaatgaat cacggtaaac cggctgacgc tgaactggaa cagatggtcc gactcattca
     5161 gacacggaat cgggaacgtg gtcctgtggc aatctgattt acgcgtctca tggcgcgctc
     5221 agtggatctc attgctcctt catgggctgg ttgccgcggt gattttattg atgccctggc
     5281 cgctgagtta taccccgtta tggatgatac tactgtcgct ggtcgtgttt gactgtgtac
     5341 gtagccagcg caggattaat acctgccagg gagagatcaa gctactcatg gacgggcgct
     5401 tacgctggca gggacaggac tggacgctct tgcgtcctcc ctggttactg aagagcggga
     5461 tggtgttgcg tttacgcgca gagtctggac gtcatcagca tttatggctg gcggcggata
     5521 gcatggaaga agcggaatgg cgtgagttgc gtcggatact gttacagcag ccgatatagc
     5581 gccaacactg acggaacgac gcaaacgcgg ttccgtcgag agggaaatac agcgagtaag
     5641 gcttcaggcg tagtgttcgg ccatttcgcc gagaatttgt tcacaccagg tctgtatacg
     5701 ctcatcgctg agatcgtact ggttcgtttc atccagcgcc aggccgacaa acagttgccc
     5761 atccgcaatg accggtttat tgctggtaaa ttcgtagcct tctgtgggcc agtagccgac
     5821 aaatttaacg cctttgaggg caagtttgtc atgcaacata cccagcgcat ccaggaacca
     5881 ctcgccgtag ccgagttggt cgcccatacc gtaaagcgca acgattttgc cttccagatt
     5941 gagatcgtcc agttgctccc agacggcttc ccagtcctcc tgaatttcgc caaaatccca
     6001 ggtggggatg cctaaaatga gcacgtcgta ctgctccatt aaggcggggg cgtcatcctt
     6061 gaggttatgt aatgtcacca gctccgggcc gaggatatcg cgaattttct ctgcggccat
     6121 ctcggtgtag cacgtgctgg aaccgtaaaa aagacccatg ttcattacgt tacatctcga
     6181 ttctgctata gcgttgcggg tagtgtaaca gaatcgctgc attcacggca caatgaggca
     6241 taatgcacca aaagtaagcg tgaagtaggg agcgcgaatg gaacaggatt tagcgcgtat
     6301 tgagcagttt ctggatgccc tgtggctgga acgaaatctg gcggaaaata cattaagcgc
     6361 gtatcgtcgc gatttatcga tggtcgttgc gtggttgcat catcgcggaa aaacgcttgc
     6421 gacggcgcag gctgatgatt tacaaacgct attggctgaa cgggtggagg gcggatacaa
     6481 agcgaccagc tccgcacgcc tgttaagcgc tatgcggcgc tttttccagc atctgtaccg
     6541 tgaaaagtat cgtgaggatg atccgagcgc acagttggcc tcgcctaagc ttccgcagcg
     6601 tttaccgaaa gaccttagcg aggcgcaggt tgaacggctc ttgcaggcgc cgcttattga
     6661 tcaacctttg gagttgcgcg ataaagctat gttggaagtg ctgtatgcca ccggtttgcg
     6721 cgtgtcggaa ctggtggggc tgacaatgag cgatatcagt ctgcggcagg gcgtggtgcg
     6781 ggttatcggt aaaggcaata aagagcggtt ggtgccgtta ggcgaagagg cggtatattg
     6841 gctggaaacg tatctggagc atgggcgtcc ctggttactc aatggcgtat cgattgacgt
     6901 attattcccc agtcagcgtg cgcagcagat gacgcgacag accttctggc accgtattaa
     6961 acattatgcg gtactggctg gaattgatag cgaaaaacta tcgccgcatg ttttacgtca
     7021 cgctttcgcc acgcatttgc tgaatcacgg cgccgacttg cgcgttgtac aaatgctact
     7081 tgggcatagc gatctttcga cgacacaaat ttatacgcat gtcgcaacgg agcgtttgcg
     7141 tcaacttcat caacagcacc atccgcgggc atgagtgctg acaggaaagg atagtttatg
     7201 aaaaagcgtt ttatgatgtt cactttactg gcggcggcgt tttcaggcgt ggcccatgcg
     7261 gatgatgcgg ctatccgtca gtcgctggct aagctgggcg ttcagagtac ggaaattcag
     7321 gcctcgccag tggcagggat gaaaaccgtc ctcactcaca gcggcgtact gtacgtcact
     7381 gacgacggca aacatattat tcaagggccg atgtatgacg tgagcggcgc gcatccggta
     7441 aatgtgacga acaaactgct gatgagccag ctaaatgcgc tggaaaaaga gatgatcgtc
     7501 tataaagcgc cggatgagaa acatgtcatt actgttttta ccgatatcac ctgcggctat
     7561 tgtcataagc tacatgaaga gatgaaagat tataacgcgc tggggatcac ggtacgttat
     7621 ctggcttttc cgcgccaggg gctggaaagc caggcggagc aggatatgaa atctatctgg
     7681 tgcgccaaag acaaaaacaa agcgtttgat gacgccatgg caggtaaggg cgtgaaaccg
     7741 gcaagctgtg acgtgaacat tgctgatcat tatgcgttgg gcgtgcagtt gggcgttagc
     7801 ggtacgccag ccattgtatt gagtaacggc tatgtggtgc ctggctatca gggaccgaaa
     7861 gagatgaaag cgtttcttga tgagcatcaa aaacagacca gtggtaaata atacgcgtga
     7921 aacaacagag acaacttcgt cggcgcgagg ctgatgagac ggcggaactc cccgccgatc
     7981 ttcctccatt actacgacgt ctatatgcca gccggggcgt tcgtagcgcc cgcgaactgg
     8041 agcgcagcgt gaaaggaatg ctgccctggc aacagcttag cggcatagat aacgcggtgg
     8101 agatcctcta caacgccttt cgcgaaggta cccgcattat tgttgttggc gattttgacg
     8161 ccgacggcgc gaccagtact gcgctaagcg tattgggaat gcgtgcgttg ggatgtgaca
     8221 acatcagtta tctggtgcct aatcgctttg aggacggcta cggtttaagc ccggaagtgg
     8281 tcgatcaggc gaaggcgcgc ggcgcacagc ttatcgtcac cgtagacaac ggcatttcat
     8341 cccacgctgg cgtagcgcat gcaaagacgt tgaggattcc ggtgatcgtg accgatcacc
     8401 acctgcctgg cgacacgttg ccggatgccg aagcgattat taatcccaat ctgcgcgact
     8461 gcgaattccc gtctaagtcg ctggcgggcg tcggcgtggc gttttacctg atgctggcgt
     8521 tgcgaacatt tttgcgcgac aaaggatggt tcgacgagcg cggcatcgcg ccgccgaatc
     8581 tggcggagct gctggattta gtggcgttgg gaacggtagc agacgttgtg ccgctggacg
     8641 ccaacaaccg tattctgacc tggcaagggc taagtcgtat tcgtgccggg aaatgccgtc
     8701 cgggaattaa agcgttgctg gagatatcga atcgcgatcc gcagcagctt gccgccagtg
     8761 atttaggctt cgcgttgggg cctcgtctga atgccgccgg caggctggat gatatgtccg
     8821 ttggcgtggc gttactgttg tgcgacaacc tcggcgaagc gcgtgttctg gccagcgagc
     8881 tggatgcgct taaccagacg cgcaaagaaa tagagcaggg gatgcaggcg gaagcgctta
     8941 tcctgtgcga aaagcttgag cgcagtagtg aaacgcttcc gggcggtctg gcgatgtatc
     9001 atcctgaatg gcatcagggc gtggtcggaa ttctggcgtc gcgcattaaa gagcgttttc
     9061 accgcccggt gatcgccttt gcacctgcgg gcgacggcac gctaaaaggc tcaggccgtt
     9121 cgattcaggg gttgcatatg cgcgatgcgc tggaaaggct ggatacgctt taccctgatc
     9181 tgatgatcaa gttcggcggt catgcgatgg cggcgggatt gtcgctggaa gagcataaat
     9241 tcgagcagtt tcagcaacgt tttggcgagc tggtgacgga atggctcgat cctgccctgt
     9301 tgcaaggcga ggtgatctcc gatggtccat taagcgcggc ggagatgtct atggaagtgg
     9361 cgcaactgtt gcgggatgcc ggaccgtggg ggcaaatgtt cccggaaccg ttattcgatg
     9421 gtcgtttccg tctgctacaa cagcgtctgg tgggcgagcg ccacctcaag gtgatggtgg
     9481 agcctgtcgg cggcggcccg ctgttggatg gcatcgcatt taatattgat acgacctgtt
     9541 ggccggataa cggcgtgcgg gaggtagaac tggcttataa actggacatt aacgagtttc
     9601 gcggcaaccg tagtttacag attattatcg atgatatttg gccgctatga tcggggcgat
     9661 ttaacaacac tttcgctgta attaaggggc gaaatccgct aatatttcac ccttataacc
     9721 gcattttgac aagtcaaata aaagaaatca gaccatgttt gaaattaacc cggtgaataa
     9781 ccgcattcag gacctcacgg aacgcaccaa cgttcttagg gggtatcttt gactacgatg
     9841 ctaagaaaga gcgtctggaa gaagtaaacg ccgagctgga acagccggat gtctggaacg
     9901 aacctgagcg cgcgcaggcg ctgggaaaag aacgttcatc gctcgaagcg attgtcgata
     9961 cgcttgatca aatgactcag gggctggacg acgtttccgg gctgctggaa ctagcggtag
    10021 aagctgacga cgaagagacg tttaacgaag ccgtcgcgga actgaatacg ctggaagaga
    10081 agctggcgca gttggaattc cgccggatgt tctccggcga gtacgatagc gccgattgct
    10141 atctcgatat tcaggccggt tccggtggta ctgaagcaca ggactgggcc agcatgttgc
    10201 tgcgtatgta tctgcgttgg gcggaagcgc gcggcttcaa gacggaagtc attgaagagt
    10261 cggaagggga agtcgccggc attaagtccg cgactatcaa aatctccggc gaatatgcct
    10321 atggctggct gcgcactgaa accggcgtac atcgtctggt gcgtaaaagc ccgttcgact
    10381 ccggcggtcg ccgtcatacc tcgtttagct ccgcgtttgt gtatccggaa gtggacgacg
    10441 atatcgatat cgacattaac ccggcggatc tgcgtatcga cgtctatcgc gcgtctggcg
    10501 caggcggtca gcacgttaac cgtacggaat ccgcagtgcg tatcacccat attcccaccg
    10561 ggatcgtgac gcagtgccag aacgaccgtt cgcagcacaa aaacaaagac caggccatga
    10621 agcagatgaa agcgaagctt tatgaactgg agatgcagaa aaagaacgct gaaaaacagg
    10681 cgatggaaga cactaagtct gatatcggct ggggaagcca gattcgttcc tatgtcctgg
    10741 acgattcccg cattaaagac ctgcgtactg gggtggaaac ccgcaataca caggcggtac
    10801 tggacggtag tctggatcaa tttatcgaag caagtttgaa agcagggcta tgaggaatca
    10861 acatgtctga acaaaacgca cagggcgctg acgaggtagt cgatcttaac aatgaaatga
    10921 aggcacgtcg cgagaagctg gctgcactgc gtgagcaggg tatcccgttc ccgaacgatt
    10981 tccgtcgtga ccgtacctca gaccaactgc acgcagagtt tgacgcgaaa gaagctgaag
    11041 aactggaagc gctgaatatt gaagtgtccg tcgcgggccg tatgatgact cgccgtatta
    11101 tgggtaaagc ctcttttgtt accctgcaag acgtaggcgg ccgcattcag ctgtatgtgg
    11161 cgcgcgatga tctgccggaa ggcgtttaca acgagcagtt caagaagtgg gatcttggcg
    11221 atatcctcgg cgcgaaaggt aagctgttca aaaccaaaac cggcgagctg tctatccact
    11281 gcaccgaact gcgcctgctg acgaaagcgc tgcgtccgtt gccggataaa ttccacggcc
    11341 tgcaggacca ggaagcgcgc tatcgccagc gttatctgga tctcatctct aacgatgaat
    11401 cccgtaatac cttcaaaacc cgttcgaaga tcctggccgg tattcgccag tttatggttg
    11461 ctcgcggctt tatggaagtc gaaacgccga tgatgcaggt gatcccaggc ggcgcgtctg
    11521 cccgtccgtt tatcacccat cacaacgcgc tggatctgga catgtacctg cgtatcgcgc
    11581 cagaactgta cctgaagcgt ctggtggttg gcggcttcga acgcgtattc gaaattaacc
    11641 gtaacttccg taacgaaggc atctccgtgc gccataatcc tgagttcacc atgatggaac
    11701 tctatatggc gtatgcggac tacaaagacc tgatcgagct gactgagtct ctgttccgta
    11761 cgctggcgca ggatgttctg ggcaccaccc aggttccata cggtgatgaa gtgtttgact
    11821 tcggtaagcc gttcgaaaaa ctgaccatgc atgaagcgat caagaaatat cgtccggaaa
    11881 cggatatggc tgatctggac aacttcgact ccgcgaaggc gattgctgaa agcatcggca
    11941 ttcacgtcga gaagagctgg ggtctgggcc gtatcgtcac cgagatcttt gacgaagtcg
    12001 ctgaagcgca tctgattcag ccgaccttca tcaccgaata tccggctgaa gtgtctccgc
    12061 tggcgcgtcg taatgatgtg aacccggaaa tcactgaccg cttcgagttc tttatcggcg
    12121 gtcgtgaaat cggcaatggc tttagcgagt tgaacgatgc ggaagaccag gcgcagcgtt
    12181 tcctggatca ggttaatgca aaagcggcgg gcgacgacga agccatgttc tacgacgaag
    12241 actacgtgac ggcgctggaa cacggtttac cgccgacagc gggtctggga attggtatcg
    12301 accgtatggt gatgctgttt actaacagcc acacgattcg cgacgttatt ctgttcccgg
    12361 cgatgcgtcc ggtgaaataa gatgtaaatt gccggatggg gcattagccg ccatccggca
    12421 tctcttcgtt cagacgtagc gccatcaggc aatctttaac gctggcagta attgagcagt
    12481 cgtttacgcg cttgttcgtc tgacgcttgc atgaccatcc acgggctaaa tgcccacggc
    12541 gtagcgagaa ggctttgcca tacgctttta aattcgctcc actgatagtc catcacctct
    12601 tcgctgttaa cctgtaacac actggttgcc cgcgcggcaa ataccggaca gacttcattt
    12661 tccacaatac cgtttggatc tgtcgcccga tagctgaagt gcggatagac gggggtgaga
    12721 tcggtaattt ccacgccgag ttcgaaccga caacggcgga tgatcgcctc ttcggtggtt
    12781 tcgccttgtt gcggatgacc gcaaaccgaa ttcgtccaca cgcctggcca ggctttcttg
    12841 ctcagcgacc gtcgtgttac cagcaattgg ccatcttcgt taaatagcca gcaggagaaa
    12901 gccagatgca aaggcgtatt aagcgtatga gccgcatact tttccagtgt gccggaaggc
    12961 ttatcctgct catccaataa aacgacatgt tcctcagtca tgaaagctcc tgaaaattaa
    13021 aatgacccgg cagcatggcc aggccatata ctcagacgat cagcgtagcg cataacagaa
    13081 agaaaggcat taccaaaaca ggccctgaca gaacgcagac gagcgctatt gtgccgtgat
    13141 tcgatattat gctggcatat cggatattcg cggcatcatc atccacacgg accctttccg
    13201 gcgtcaatgg attgggcata cggcatttgg ctgctatcat aaggcgtctg tcaatagagt
    13261 gaggaatggt tttgagcgca ggacgcctga acaaaaatag cctgggtatt gcggtgctgt
    13321 tatgcacagg gctgctgctg gcggggtgtt ccagtaattc cggctcagga acgtattccg
    13381 gctccgtcta taccgttaag cgcggcgata cgttgtatcg tatatcgcgc gctacgggaa
    13441 ccagcgtgaa agaactggcc cgactgaatg gcatttctcc gccttatact attgaggtgg
    13501 ggcagcgaat taaagtgcgc ggcagcgcaa agagtagcag ttcaacacgc aaaaccagca
    13561 ataaaacagc aacaaaaact gctgcggtca gaccgtcatc ttcggtgcca aaatcctcct
    13621 ggccgccggt ggggcagcgt tgttgggtat ggcctgctaa cggtaaagtg attttacctt
    13681 attccaccgc ggagggcgga aataagggga tcgatattgc gggcgcgcgc ggaacgcctg
    13741 tttatgcggc gggagcgggt aaagttgtct atgtcgggaa ccagctgcgc ggttacggca
    13801 atctcatcat gattaagcac aatgaagatt acattacggc ttacgctcat aatgacacca
    13861 tgctggttaa taatggacaa agcgttaaag cggggcaaaa aatcgctacg atgggcagca
    13921 cggatgccgc atccgtaaga ctacacttcc agattcgcta ccgggcgacg gccatcgatc
    13981 cgctgcgtta tctgccgccg caggggagta aaccgaagtg ctgacggcga attaatcgcc
    14041 agtcagccag taagtctctt gccaaccaga gcgtaaggtt tataatgcct tacgcatctc
    14101 aaagcgggcg tagttcaatg gtagaacgag agcttcccaa gctctatacg agggttcgat
    14161 tcccttcgcc cgctccatga cctttcttaa agtactccaa cctactgaat cctaagggat
    14221 acggctttaa gccttccgct agttttactc actgtaacca acactgtaac taaatttgtt
    14281 gaaatagtga gcagacttaa gatctcagta catgctcaac tcaaaaacct atctttatca
    14341 gcgcaatggc gtcttttata tccgcctcag gatgaagtcc acagatcgcc tgaccgtttc
    14401 acatccttcc catagccgtt ataaaatagc gtcagtatca ctacggacta aggatagacg
    14461 tacagctatg gcttactcac ggcatatcaa ggcagcactt agggcaatcc atgcagacag
    14521 acccaacgcc tcctatgagg aaatgaggga acacctgagg gacatcgcag agtgggagtt
    14581 gtctacaggt cgttcagacc tcttcgagcc agatatgaga gatctatacc gtgaccagta
    14641 tggggaagtg ggagagaatc ttgtccatag cgagccactg actattgacc agcatcgcta
    14701 tattaatgag gctcttaatg tactcaaggc ctgcatgaag cgcattgaag cgggagatag
    14761 ccagccactt atagattata tagatggatt tgatgctgct gctggtgcta atgaccaagc
    14821 ctctgcaact ctatctgtta gtgctcccca aaaaacaagc attactgaag gcaaacactg
    14881 cgtaaccgtt gcttctctct ttgagcagta cgagcaggaa aacgcccaga actggaagcc
    14941 agcaacatta cgagaaaaca aagcttctca tgctgcgtta atcgaggttt ttgattatct
    15001 gggcctcaat gctgacgcca atgtgttagc tcgtgcggat atgcttaggg ttcgggatat
    15061 cctccagcaa ttgccgaaga atcgtaagca gcgtttcaaa gatgttccgt tggttgacct
    15121 gctaggtcgt gaggataaaa ccgattgtct ggatattgtt accatcaata ataaatatct
    15181 cattaagatg gcggctgttt tcaagtgggc cgtgcgtaat gacctgatta aaaagaatat
    15241 gacagaaggg ctagagctta aggttcccca gcgtaaagcc tctgaggcgc gtaatgcttt
    15301 ctctacggag caggtaggac aactactggc tgccgcccaa gtttactcac agagaccttc
    15361 tggtaagccg tatcattatt atgttaccgc cttggctgct atcactgggg cgagactcaa
    15421 tgaaatagcc caactacagg tcaaagacgt caggaccact gaggcgggaa ccgtttatat
    15481 tcatatcaat gaagacgata gtagtctacc cggtaagagc atcaagaacg ctcatagtga
    15541 ccgctgtgtg cctctggtcg atggggccta tggttttata ttggctgact ttatgaggtt
    15601 ggttgagacc cgtagaggcg ctgatggtga tgacgctatg gtgttcgatg gtcttcgcct
    15661 catgaagaac ggttacggtg agcaggtgag taaatggttt aatcggacgt tgttgcctaa
    15721 agtcctcgca gatcgtagcg gcttagcgtt tcactcgttt agacatacag ttgcgaccca
    15781 gttaaaacaa catggggtcg agttggcgta tgcacaggcg atcatggggc atagttcagg
    15841 gtctattact tacgaccgtt atgctaaaga ggttgaggtt gataggctgg tcaatgtgat
    15901 ggctgatgtt tataaggaga ttgtggggta accaagctgt ccccccccgg ggagatttgc
    15961 cttgaggctg accatagtcg atgaccatat tgctacaggc ctgtgtggtc atgtttttga
    16021 ctcacagttt tcactacttg tcaaggattt ctaatacgac tcactatagg gagaagggac
    16081 acaaaaagtt ttctctcttt ctctctcttc tgggacactt gctactacta ctacaggtag
    16141 ctctaactct aactctaacc gtaacttatc gcatcctttc aggggcggga tgaccaatta
    16201 cagacaccaa gcgttctact taaagtgaat gcttcctgtg tgctctgggt cagtcgataa
    16261 gtgaatagca atagac
//
LOCUS       DAJVSD010000085        16053 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.085, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000085 DAJVSD010000000
VERSION     DAJVSD010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 16053)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16053)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16053
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.085"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..389
                     /locus_tag="OQP62_002210"
     CDS             <1..389
                     /locus_tag="OQP62_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HCS1721752.1"
                     /translation="KQVAEMRVTIPVSALNTGVDAFDNHIRSSDILDAEKYPEIVFKS
                     TKWHFEDNKPVSIDGLLTMKGVTKPVTLTTTKFGCYMSPIFKAQVCGGDFVTQIDRTQ
                     WGVDYLVDMGMTKVVDIKIQAEAVKQ"
     gene            401..1603
                     /locus_tag="OQP62_002211"
     CDS             401..1603
                     /locus_tag="OQP62_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycolate oxidase"
                     /protein_id="HCS1721753.1"
                     /translation="MKTHHLIRVVASLAMLATSGLAYAEEYKASTDEKAIKMTNVASL
                     EARVQARMEKGAFGYIRGGAEDENNLRSNTESFDKKYIMPRVLQGIELKEIDLSTQLL
                     GIPLKTPIIQAPMAAQGLAHASGELATAKGMAQVGSIFSLSTYGNKTIEEVANVSGKN
                     PFFFQLYMSKNNQFNEFILAQAVKHGAKAIILTVDSPVGGYREEDIKNNFQFPLSFAN
                     LEMFARKNDDGSKTGKGAGISEIYAQAKQAFTPEDIAYVHRISGLPVIVKGIQSPEDA
                     EIAIQAGAAGIWVSNHGGRQLDSGPSSFDMLPAIAKVVNKRVPVIFDSGVRRGSHVFK
                     ALASGADIVAVGRPVLYGLNLGGAQGVASVIEQLNKELTINMMLGGARNIEQVKTTRL
                     LTEKDLPQ"
     gene            complement(1661..2095)
                     /gene="aac(6')"
                     /locus_tag="OQP62_002212"
                     /pseudo
     CDS             complement(1661..2095)
                     /gene="aac(6')"
                     /locus_tag="OQP62_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460578.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cryptic aminoglycoside N-acetyltransferase
                     AAC(6')-Iy/Iaa"
     gene            complement(2095..2886)
                     /locus_tag="OQP62_002213"
     CDS             complement(2095..2886)
                     /locus_tag="OQP62_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1721754.1"
                     /translation="MSQQRPDRIKQMLHYLWQHRHLSTQQAIELFGYAEATVRRDFHY
                     IASRYPGMVRGHGCIDFDDSTEDKEYVFDVKRTLQSEAKREIAALARTFIKDGDCFFL
                     DSGSTCLELAKCLVDAKVKVICNDIKIANELGGFPHVESYIIGGLIRPGYFSVGESLA
                     LEMINAFAVERAFISCDALSIETGITNATMFEVGVKTRIIQRSREVILMADHSKFDTV
                     EPHAVATLSCITTILSDSALPSAIARRYQQAGCRLIMSDPSSGAR"
     gene            complement(2902..3534)
                     /locus_tag="OQP62_002214"
     CDS             complement(2902..3534)
                     /locus_tag="OQP62_002214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3 epimerase family protein"
                     /protein_id="HCS1721755.1"
                     /translation="MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNIT
                     FGMKTIQAVAQYSRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADI
                     RAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREH
                     FPAAECWADGGITLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFTAL"
     gene            complement(3546..3983)
                     /locus_tag="OQP62_002215"
     CDS             complement(3546..3983)
                     /locus_tag="OQP62_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HCS1721756.1"
                     /translation="MINDVKWVQAQRHASDWRHALDIAVRPLITFGAAAPCYLDGIIE
                     NTLKWGPYYLIAPGIALPHARPEQGANHNQISVTTLSTPVAFGNADCDPIWLLLCASA
                     TDAEAHIRTIQRISQWLDSPESVAMLQDAPNDAALFAQLTALR"
     gene            complement(4115..4921)
                     /gene="sgcQ"
                     /locus_tag="OQP62_002216"
     CDS             complement(4115..4921)
                     /gene="sgcQ"
                     /locus_tag="OQP62_002216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BtpA family protein SgcQ"
                     /protein_id="HCS1721757.1"
                     /translation="MSWLKEVIGTEKAVIAMCHLRALPGDPGFDTRKGMNWVIDRAHD
                     DLMALQNGGVDAVMFSNEFSLPYLTKVRPETTAAMARIIGQLMSEIRVPFGVNVLWDP
                     VASFDLAMATDAKFIREIFTGAYASDFGVWDTNVGETIRHQHRIGAGHVKTLFNIVPE
                     AAVYLGNRDVCSIAKSTVFNNNPDALCVSGLTAGARTDSAILKRVKDTVPDTVVLANT
                     GVCLENVEEQLCIADGCVTATTFKKDGVFANFVDQARVAKFMEKVRHIRQ"
     gene            complement(4935..6248)
                     /locus_tag="OQP62_002217"
     CDS             complement(4935..6248)
                     /locus_tag="OQP62_002217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCS1721758.1"
                     /translation="MFDYILSLGGTVFVPIIMIIIGLIFRIPWLQAVKAGVTVGIGFV
                     GMGLVIVMAIDSLSPPIKVMIERFGLTLHVFDVGAGPASGVGYATAIGAMIIPVIFLL
                     NVGMLVTRLTKTMNVDIYNYWHYAITGTVVQLMTGSLIYGVLGAICHAALSLKMADWT
                     TKRVQNIVGLEGISIPQGYGSSSVPLFVLLDAIYEKIPFMKGRNIDAQEIQKRYGMVG
                     DPVIIGVVLGLIFGLAAGEGFKGCATLMITVAAIMVLFPRMIRLIVEGLMPISDGARK
                     FFQKHFKGREVFIGLDTAVTLGHPTTIAVGLLLIPIMLILASILPGNKVLPLADLPVA
                     PFFICMATVIHRGDLIRTLLSGIIVMITVLLIATQFAPYFTDMALKGGFSFAAENAQI
                     TALSVGNMFGWSISELMSLGMIGVVIVVGIVASIILVLRKRELPE"
     gene            complement(6259..6540)
                     /locus_tag="OQP62_002218"
     CDS             complement(6259..6540)
                     /locus_tag="OQP62_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HCS1721759.1"
                     /translation="MMKKILVACGTGMSTSTMIAQKLQDFLAEQGIAATTAQCCLNEI
                     PLNCNGMDLIVTSMRTHSDYGIPTLNGAALLTGINDDALKQEIKALLTQ"
     gene            complement(6537..7655)
                     /locus_tag="OQP62_002219"
     CDS             complement(6537..7655)
                     /locus_tag="OQP62_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HCS1721760.1"
                     /translation="MTFSVQETLFSLLRLNGISGHESSIANVMQHAFEQQAKDVWRDR
                     LGNVVARYGSDKSDALRLMIFAHMDEVGFMVRKIEPSGFLRFERVGGPAQITMPGSIV
                     TLAGCSGDIMGCIGIKAYHFAKGDERTQPPALDKLWIDIGAKDKADAERMGIQVGTPV
                     TLYNPPHCLGNDLVCSKALDDRLGCTALLGVAEALASTPLDIAVFLVASVQEEFNIRG
                     IVPVLRRVRPDLAIGIDITPSCDTPDLQDYSDVRVNHGVGITCLNYHGRGTLAGLITP
                     PRLLRMLETTAHENNIPVQREVAPGVITETGYIQVELDGIPCASLSIPCRYTHSPAEV
                     ASLRDLADCIRLLTALANMSPEQFPIDPETGATQEARP"
     gene            7872..8411
                     /gene="rimL"
                     /locus_tag="OQP62_002220"
     CDS             7872..8411
                     /gene="rimL"
                     /locus_tag="OQP62_002220"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12-serine
                     acetyltransferase"
                     /protein_id="HCS1721761.1"
                     /translation="MVEIIPVSTTLELRAADESHVPALHQLVLKNKAWLQQSLDWPQY
                     VTSQEETRKHVQGNMLLHQRGYAKMYLIFCQDEMAGVLSFNAIEPINKAAYIGYWLDE
                     SLQGQGIMSQSLQALMTHYARRGDIRRFVIKCRVDNQASNAVARRNHFTLEGCMKQAE
                     YLNGDYHDVNMYARIIDAD"
     gene            complement(8408..9388)
                     /locus_tag="OQP62_002221"
     CDS             complement(8408..9388)
                     /locus_tag="OQP62_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721762.1"
                     /translation="MIKYRLSEEPRAFTYQVDGEKKSVLLRQVIAVTDFNDVKAGTSG
                     GWVDADNVLSQQGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRAD
                     ISDGARISDNVTIQSSSVRGECAIYGDARVLNQSEILAVQGLTHEHAQILQIYDRATV
                     NHSRIVHQVQLYGDATITHAFIEHRAEVFDFALIEGNKDNNVWICDCAKVYGHARVIA
                     GTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHAC
                     IQGEILIERQVEISGRAAVIAFDGNAIHLRGPKVINGEDRITRTPLVGSL"
     gene            9495..10508
                     /gene="tehA"
                     /locus_tag="OQP62_002222"
     CDS             9495..10508
                     /gene="tehA"
                     /locus_tag="OQP62_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate transporter/tellurite-resistance
                     protein TehA"
                     /protein_id="HCS1721763.1"
                     /translation="MCNHKQSDRVLNLPAGYFGIVLGTIGMGFAWRYASQIWAISHWP
                     GDIMVILAMIIWALLTLAFLSRLVRFPHSVMAEVRHPVMSSFVSLFPATTMLVAIGFV
                     PWYRPLAVALFSVGVVIQLAYAAWQTAGLWRGAHPEEATTPGLYLPTVANNFISAMAC
                     GALGYNDAGLVFLGAGVFSWLSLEPVILQRLRSCGELPAVLRMSLGIQLAPALVACSA
                     WLSVNGGEGDTLAKMLFGYGLLQLLFMLRLMPWYLSQPFNASFWSFSFGVSALTTTGL
                     HLGHGSESGFFHILAVPLFIFTNAIIALLLVRTFLLLVQGTLLIRTERAALLKTEEKN
                     DRS"
     gene            10495..11091
                     /gene="tehB"
                     /locus_tag="OQP62_002223"
     CDS             10495..11091
                     /gene="tehB"
                     /locus_tag="OQP62_002223"
                     /EC_number="2.1.1.265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance methyltransferase TehB"
                     /protein_id="HCS1721764.1"
                     /translation="MTVRDENYFTEKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRN
                     SLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILST
                     VVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPGFPCTVGFPFAFKEGELRRYY
                     EGWDMLKYNEDVGELHRTDENGNRIKLRFATMLARKTA"
     gene            11247..11915
                     /locus_tag="OQP62_002224"
     CDS             11247..11915
                     /locus_tag="OQP62_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3313 domain-containing protein"
                     /protein_id="HCS1721765.1"
                     /translation="MRTHTLFKVAVLTGLLALSGCASKVTQPDKYSGFLKNYSDLKET
                     TSATGKPVLRWVDPHFNDSNYDSIVYNPITYYPIPKPTTQVGQQVLDKLLAYTNTKVK
                     SAIEQRKPLVTTAGPRSLIFREAITGVDTSKEGLQFYEVIPVALIVAGTQMATGHRTM
                     DTHLYFEGELIDAATNKPVVKVVRQGEGKDLSNSSTPMAFETLKQVVDDMATDTSMFD
                     TNKK"
     gene            complement(11969..13147)
                     /locus_tag="OQP62_002225"
     CDS             complement(11969..13147)
                     /locus_tag="OQP62_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="benzoate/H(+) symporter BenE family transporter"
                     /protein_id="HCS1721766.1"
                     /translation="MRLLSLPLPTVLSGLVAVLVGYASSAAIIWQAALAAGATPAEIA
                     GWMTALGIAMGISTLTLTLWYRAPVLTAWSTPGAALLVTGLQGLSLPDAVGIFIVANA
                     LIVLCGVTGLFARLMRIIPHSLAAAMLAGILLRFGLQAFGTLNGEFVMCGGMLLAWLL
                     FKVFAPRYAVIAAMVMGITVALIQGKMAMSGIHFAPVWPTFVPPHFSFAQSLSVAVPL
                     FLVTMASQNAPGVATMKASGYQLPVSPLMIFTGLLALLLSPFGVYSICIAAITAAICQ
                     SPDAHPDPTRRWLAAAAAGVFYLLAGWFGGSITELMVALPVSWVQMLAGLALLSTISG
                     SLYQALTHESERDAAVIAFLVTASGLTLMGIGSAFWGLIAGGIGYAILTRTRRPSLSG
                     "
     gene            13239..13775
                     /locus_tag="OQP62_002226"
     CDS             13239..13775
                     /locus_tag="OQP62_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1721767.1"
                     /translation="MDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNE
                     SSPTVATLWKIATGLNVPFSMFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYF
                     SLLLAPGAVSESTPHKAGVIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAGDTAHTYR
                     NSSDQTVHFHSLIHYPRD"
     gene            13854..15818
                     /locus_tag="OQP62_002227"
     CDS             13854..15818
                     /locus_tag="OQP62_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HCS1721768.1"
                     /translation="MRQQPHYLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNA
                     SNSLRDIADLVPFAHRYGARIFVTLNTILHDDELEPAQRLITDLYNTGVDALIVQDMG
                     ILELDIPPIELHASTQCDIRSVEKAKFLADVGFSQIVLARELNLSQIAAIHQATDATI
                     EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLS
                     MKDNDQTANLGALIDAGVRSFKIEGRYKDMSYVKNITAHYRQMLDAIIEQRGDLARAS
                     VGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLPVGEVLNVAKDYLDV
                     EATEPLANGDGLNVLIKREVVGFRANTVEKTGHNRYRVWPNDMPADLHKVRPHHPLNR
                     NLDHNWQQALTKTSSERRVAVDIMLGGWQEQLILTLTSEDGVCITHTLDGVFEEANNS
                     EKALNNLTAGLAKLGQTLYYARDMQVTLPAALFVPNSLLNQFRREAIDMLDAARLAHY
                     QRGRRKPVAQPAPVYPQTHLSFLANVYNHKAREFYHRYGVQLIDAAYEAHQEKGEVPV
                     MITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVHGDEVLTLKFDCRPCEMHVIGKIKN
                     HILKMPQPGSVVASVSPEALMKTLLKRRGV"
     gene            complement(15819..16049)
                     /locus_tag="OQP62_002228"
     CDS             complement(15819..16049)
                     /locus_tag="OQP62_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2554 family protein"
                     /protein_id="HCS1721769.1"
                     /translation="MLTKTLSVVLLTCALFSGQLLAKQQDHAFVWFATGGHQLRHEAD
                     SDELRAAAEESAEGLREHHNWQKSRKPESYFR"
BASE COUNT         3933 a         4099 c         4269 g         3752 t
ORIGIN      
        1 aaaagcaagt cgcagagatg cgtgtgacga ttcccgtgag cgccttaaat accggggtgg
       61 atgcgtttga taaccatatt cgcagtagcg atattttgga tgcggaaaaa tatccagaaa
      121 tagtatttaa atcgacaaaa tggcattttg aagataataa accagtttct attgacggtt
      181 tgttaacaat gaagggagta actaagcccg tcaccttaac caccaccaag tttggctgtt
      241 atatgagccc gatattcaag gcgcaggttt gcggtggtga ttttgtcacg caaatagatc
      301 gcacccagtg gggtgtagat tatctggtcg atatggggat gacgaaagtt gtcgatataa
      361 aaatccaggc agaagcggtt aagcaataaa aggaataatg atgaaaactc atcacctcat
      421 tcgggtagtg gcctcgctgg caatgttggc aacatcaggc ctggcttatg ctgaagagta
      481 caaagccagc acggacgaaa aagcaataaa aatgacgaac gtagcctctc tggaagcgcg
      541 cgttcaggcc agaatggaga aaggggcatt tggttatatt cgcggtggag ccgaagatga
      601 gaataacctt cgcagcaaca ccgaaagctt tgacaaaaaa tatattatgc cgcgcgtatt
      661 acagggcatt gagttaaaag agatcgattt atcaacgcag ctactgggta ttccgcttaa
      721 aacgcctata atccaggcac cgatggcggc gcagggcctg gcccacgcct ccggagagtt
      781 ggcgacggcg aaaggcatgg cgcaggtcgg ttcgattttc tcgttgagca cttatggcaa
      841 caagaccatc gaagaggtgg ctaacgtttc cgggaaaaac ccgttcttct tccagcttta
      901 tatgagtaag aataatcaat ttaacgaatt tattcttgca caagcggtaa aacatggcgc
      961 taaagcgatt attctgaccg tagattcacc tgtcggcggt tatcgggaag aagatattaa
     1021 aaataacttc cagttcccgc tgagttttgc aaacctggaa atgttcgcca ggaaaaatga
     1081 cgatggttca aaaaccggca aaggggcagg gataagtgaa atttacgcgc aggctaaaca
     1141 agcctttacg ccggaggata ttgcctatgt acatcgtatt tccggtctgc cggttattgt
     1201 aaaaggcatt cagtcgccgg aggatgctga aattgctatc caggctgggg ccgcaggaat
     1261 atgggtttct aatcatggtg gccgtcaatt agacagcggg ccgtcctcat tcgatatgct
     1321 tcctgcgatt gcaaaagtcg tcaacaagcg agtgcctgtt atttttgaca gtggagtacg
     1381 ccgtggttcg cacgtattca aggcgttagc cagcggggcg gatattgtgg cggttggccg
     1441 acctgtatta tacggtctta atcttggcgg cgctcagggt gtggcatcag tgattgaaca
     1501 gctaaacaaa gagctgacaa ttaacatgat gttgggtggc gccaggaata ttgaacaagt
     1561 gaaaacgaca cgcttgttaa ctgaaaaaga tctgccacag taatacagta atatagaggt
     1621 cgggtattat acccgacctt ttcctgtgtg attttcctcg acaacgcttt cggtagaaaa
     1681 tgacgcgctc tgtttcctca aatcctaacg ccaggtgaac tttctgtgaa attgtatttt
     1741 ccggcgaggt atcggaagcc atttcccgac accctttatt cgttccccat cgttgcactg
     1801 ctgctatcaa ttgtttcgct aagccgcgtt gacggaacga ggggagaaca aaaatacctt
     1861 caaggaaaac cacgggcgaa ctgtcacagc cattgacata atcgtggcgg attgaggcat
     1921 ccgcaaagcc aatcgccacc ccgtctgcca tcgcaataaa tgatgccaga tgttcggctt
     1981 gcagaatttc ttcgccgtcc gccagatggg cgtcatccgg gtgaccaggc cagagctgtt
     2041 ttcgcaatcc gcgccagtgc tccagatggg ttttgttcat ttgcctgatg tccattaacg
     2101 cgctcctgat gaggggtctg acatgatgag acggcatccc gcctgctgat aacgtcgggc
     2161 gatagcagac gggagcgcac tgtcgctaag aatggtagta atacaggaca gcgtcgccac
     2221 cgcatggggt tctacagtat caaactttga atgatcggcc atcaatatga cctcgcgtga
     2281 gcgctgaata atgcgcgttt tgacgcctac ttcaaacatg gtagcgttgg tgatgcccgt
     2341 ttcaatcgac agcgcatcgc aagagataaa ggcgcgttca acggcaaagg cgttaatcat
     2401 ctccagcgcc agactctcgc ccaccgaaaa gtagccgggg cgaatcagtc cgccaataat
     2461 gtagctctct acgtgtggga agccacccag ttcgttagcg attttgatgt cattgcaaat
     2521 gacttttact ttggcgtcga ccagacattt tgccagttcc agacaggtgg agccagagtc
     2581 gagaaaaaag cagtctccat ccttgatgaa cgtgcgggcg agggcggcaa tttcgcgttt
     2641 cgcctcgctt tgtaacgtcc gcttaacgtc gaaaacatat tctttatctt ccgtactgtc
     2701 gtcaaagtca atacaaccat ggccgcgaac cataccggga taacggctgg cgatatagtg
     2761 aaaatcccgg cgcacggttg cctctgcata gccaaaaagc tcaatagctt gttgtgttga
     2821 gaggtgcctg tgttgccaaa ggtaatgcaa catctgtttg atacggtcgg ggcgctgttg
     2881 gctcatcagc atatgactcc tttatagcgc ggtgaattgt gacaatgtca catcatagtt
     2941 cgccgtcgtg aacaacgccc ggccaatcac cagatgctgg gcgcctgcgg cggcaagcag
     3001 ccgtgcggcg cgaagtgtaa taccgccgtc cgcccagcat tccgcagcag ggaaatgctc
     3061 tctgctctgg ctcacttttt cacacatcgc ggcaataaat tgttgcccgc gcccgtcggg
     3121 ttcgctggtc atgatcatca gcgcatccag ttgcaatgcc agataacgat aaggcaatag
     3181 cggtgttgcc gggttaagcg ccagtcctgc tttcgccccg atagcgcgaa tatccgccag
     3241 aatctccgag gggttttgca cgctttcggc atgaatgaaa atccagccgg ggcggatagc
     3301 tgcaagccag ggtaaccagc gttgcggtga tgaaaccatc aggtgaaatg agagcggatg
     3361 gcgagagtat tgcgcgaccg cctgaatggt tttcataccg aaggtaatat tgttgatgaa
     3421 actggtatct tcgatatcca gatgcagcga gccgagaggc gcatcgtgta aagcggtcaa
     3481 cgcctcggca tagcgcagcg gatcggcgga ggccagtgaa gggtgcagga tcatcggaac
     3541 cttcatcagc gcaatgcggt taattgcgcg aaaagcgcgg catcatttgg cgcatcttgc
     3601 aacatcgcga cgctttccgg cgagtcgagc cactggctga tgcgttgaat ggtgcgaata
     3661 tgtgcttcgg catccgtggc gctggcgcaa agcaacagcc agatgggatc gcaatccgca
     3721 ttgccgaaag cgaccggcgt tgatagcgta gtgacgctga tttgattatg gttggcgcct
     3781 tgctctggtc tggcatgggg cagcgcaatc cccggcgcga taagataata tggcccccat
     3841 ttaagggtgt tctcaataat accgtccagg tagcaggggg ccgccgcgcc gaaggtaatc
     3901 agcggacgaa cggcgatatc cagcgcgtgt cgccagtcgc tggcatggcg ttgcgcctga
     3961 acccacttaa catcattaat catcgatcgt tgactccttg ccggttcggg ttactctgaa
     4021 accgatcccc ggcgtgtctt ttggcgaagg cgacggagat cggcagaaga gttatcgctc
     4081 tctgcagggg ataagcgttt tgcttatccc cattttattg tcggatatgg cgtactttct
     4141 ccataaactt cgccacgcgc gcctggtcga caaagttggc gaagacgccg tcttttttaa
     4201 acgtggttgc cgttacgcat ccgtcggcaa tgcagagctg ctcctcgacg ttttccagac
     4261 acaccccggt attcgccagc acgaccgtgt cgggaacggt atcttttacc cgcttcagta
     4321 tggcgctatc cgtgcgggcg cccgccgtca gccccgagac gcacagggca tcggggttat
     4381 tgttaaatac ggtcgatttc gcaattgaac agacatctcg gtttcccaga tacaccgccg
     4441 cttccggcac gatgttaaac agcgttttca cgtggcctgc gccgatgcga tgctgatggc
     4501 gaatagtttc gccgacattc gtatcccaga cgccaaaatc gctggcgtaa gcaccggtga
     4561 aaatttcgcg aataaatttt gcgtcggtcg ccatcgccaa atcaaaagag gccacagggt
     4621 cccacaacac gtttacccca aacggtacgc gaatttcact cattaactga ccgatgattc
     4681 gtgccatcgc ggcagtcgtt tccggtctga ctttcgttaa ataaggcaga ctaaattcgt
     4741 tggagaacat caccgcatcc acgccgccat tttgtagcgc cattaaatcg tcatgggcgc
     4801 ggtcaattac ccagttcatg cctttcctgg tatcgaaccc gggatcgccc ggcagcgccc
     4861 gtaaatggca catggcgata acggcttttt ctgttcctat tacctctttt agccaactca
     4921 ttctgggttg ctccttattc cggtagttca cgtttacgta agacaagtat gatgctggcg
     4981 acaatgccga ccacaataac cacaccaatc atgcccagcg acatcaattc agatattgac
     5041 cagccaaaca tatttcccac cgacagcgcg gtaatttgcg cgttttcagc ggcgaagcta
     5101 aagccgcctt tgagcgccat atcggtaaag tacggcgcga actgggtggc gatcagcaaa
     5161 acggtaatca tgacaatgat gccgctgagc agagtacgaa tcagatcgcc gcgatgaata
     5221 actgtggcca tgcagataaa aaatggcgcg accggtaaat cagccagcgg caggacttta
     5281 ttgcccggca gtatgctcgc cagaattaac atgatgggaa ttaacagcag tccaaccgcg
     5341 atggtggtcg ggtggcctaa cgtcactgcg gtatccagac cgataaagac ttcgcgccct
     5401 ttaaagtgtt tctggaagaa cttacgcgcg ccgtcggaaa tgggcattaa tccctcaacg
     5461 ataaggcgaa tcatgcgcgg aaacagcacc ataatcgccg ccacggtaat cattaaggtt
     5521 gcgcaccctt taaagccttc gcctgcagca agtccgaaga tcagcccgag aacaacgcca
     5581 atgatcaccg ggtcgccgac catcccatac cgtttttgga tctcctgagc gtcaatattg
     5641 cgtcctttca taaacggtat tttttcgtat atcgcatcca gcaatacgaa caacggcacg
     5701 gagctggagc catacccttg cggaatagaa atcccttcca gacccacaat gttctgtacc
     5761 cgtttcgtcg tccagtcggc cattttcaac gacaaggcgg catggcaaat cgcgcccagt
     5821 acgccataaa tcagactgcc ggtcatcaac tggacgaccg ttccggtaat ggcgtagtgc
     5881 cagtagttat aaatatcaac gttcatggtt ttggtcagac gagtcaccag cataccgacg
     5941 ttgagcagaa agataacggg aatgatcatc gcgccgatgg ccgtcgcata gccgacgccg
     6001 gatgcgggcc cggcgccgac gtcaaacaca tgcagcgtca ggccaaaacg ctcaatcatc
     6061 actttaatcg gcggactgag actgtcgatc gccatgacga tcaccagccc catgccgaca
     6121 aaaccgatgc cgaccgtcac ccccgctttc accgcctgca gccagggaat acgaaagatt
     6181 aagccgatga taatcataat gatgggcaca aagacggtgc cgccgagaga caggatgtaa
     6241 tcaaacataa tgcccccttt attgtgttaa cagcgccttg atttcttgtt ttaatgcgtc
     6301 gtcgttgatg cctgtcagca gggcggcgcc gttgagcgtc gggatgccat agtcactgtg
     6361 cgtacgcatg gacgttacga tgagatccat accgttacag ttcaacggga tctcattcag
     6421 acaacattgc gccgtggttg ccgcaatgcc ttgctccgca agaaagtcct gcagtttttg
     6481 tgcaatcatg gttgatgtcg acatgccggt accacatgcc acaaggatct ttttcatcat
     6541 ggtcgtgcct cttgtgtagc gcctgtttca gggtcaatgg gaaactgttc tggcgacata
     6601 ttggccagcg cagtcagtaa acggatacaa tcagccaggt cgcgcaggct ggcgacttcg
     6661 gctggcgagt gggtatagcg gcagggaata gaaagactgg cgcagggaat accgtccagt
     6721 tcaacctgaa tgtagcctgt ttcggtgatg acgcctggcg cgacttcacg ctgtacggga
     6781 atattatttt cgtgcgcggt ggtctccagc atccgcagca aacgcggcgg cgtaatcagt
     6841 cccgccaacg taccgcgtcc gtgatagttc agacaggtga tgccgacgcc gtggttgacc
     6901 cgcacatccg agtaatcctg caggtcaggc gtgtcgcagg agggggtgat atcaatacca
     6961 atcgccaggt cggggcgcac gcgtcgtaaa acgggaacaa tcccgcgaat attgaactct
     7021 tcctgtaccg acgcgaccag gaataccgcg atatcaagcg gtgtggaggc gagggcctcg
     7081 gcgacgccca gtagcgccgt acaccccagc ctgtcatcca gcgccttact gcacaccagg
     7141 tcgttgccca gacagtgcgg cgggttgtaa agggttactg gcgtccccac ctgaataccc
     7201 attcgttcgg catccgcttt atcttttgcg ccgatatcaa tccagagttt atcgagcgcg
     7261 ggtggctggg tgcgctcgtc acccttcgcg aagtgatatg ctttaatacc gatacagccc
     7321 atgatatcgc ctgaacatcc ggcaagcgtc acaatcgaac cgggcatagt aatttgcgcc
     7381 gggccgccca cgcgttcaaa acgtaaaaaa ccggagggtt cgatcttgcg taccataaaa
     7441 cccacttcat ccatatgcgc aaaaatcatc aggcgaagcg cgtcggattt atcgctgcca
     7501 taacgggcga cgacattacc taagcgatcc cgccagacgt ctttggcctg ctgttcgaac
     7561 gcgtgctgca taacgtttgc aatactgctt tcatgtcctg aaatcccgtt tagccgcagt
     7621 aaagaaaaaa gcgtttcctg cacagaaaag gtcattggcg tctccgtggt gataaaacaa
     7681 tcagtcgttg agcgttttat aggcggagaa tggttggata agtgtgaaat gtgtcacgcg
     7741 gaaatacgct aaatatggtc aataaaaaat aatgtgatgg cgatacaata aaaacgctca
     7801 tatcacctgc gggttatcgg taaaccaggc tatttatgtg atcacgacca acaacgaaga
     7861 agggcaacgc gatggtggaa attattcctg ttagcacgac gctggaactg cgagcggcag
     7921 atgaaagtca tgttccggcg ctgcaccaac tggtactcaa aaacaaagcg tggctacaac
     7981 agtcgctcga ctggccgcaa tatgtcacgt cgcaggagga aacgcgtaag catgtgcagg
     8041 gtaatatgct gttgcaccag cgtggttacg ccaaaatgta cctgattttc tgccaggatg
     8101 agatggcggg cgtactctca tttaatgcca tcgagccgat aaacaaagcc gcctatatcg
     8161 gttactggct ggatgagtcc cttcaggggc aagggataat gtcgcaatca ttacaggcgc
     8221 tgatgacaca ttatgcccgg cgcggcgata ttcggcgctt cgtcattaaa tgccgcgttg
     8281 ataatcaggc cagtaacgcg gtcgcacggc gcaaccattt tacgctggaa ggctgtatga
     8341 aacaggcgga gtatcttaac ggcgactatc acgacgttaa tatgtatgcc cgcattattg
     8401 atgcggatta aagagaaccg actaaggggg tacgcgtaat acgatcttct ccattgatca
     8461 cttttgggcc gcgtaggtga atagcattgc cgtcaaacgc tatcaccgcc gcccgtccgc
     8521 taatctcgac ctggcgctca atcagaattt cgccctgtat acaggcatgg ccttcaatca
     8581 gcacgcggtc gtccagtaaa atcggacctc cgcgtacctc agcatgtccg cctaccagca
     8641 catgatgttt taacacacag ttgccttcga ttaacgcatg ttccgctacc tgcgagctgt
     8701 agcgaagggt agggatagca tcttcctctg tgccggcgat aacccgcgca tggccataga
     8761 ctttggcgca gtcacagatc cagacattat tgtctttgtt gccttcgatg agcgcgaaat
     8821 caaagacctc cgcccggtgc tcaataaaag cgtgagtgat agtggcgtcg ccataaagct
     8881 gtacctgatg gacaatccgc gaatggttca cggtggcgcg atcgtaaatt tgtaaaatct
     8941 gcgcatgttc atgcgttagt ccctgaacag cgagaatttc tgactggttt aacacgcggg
     9001 catcgccata aatcgcacac tctccacgca cggaagagga ctgaatggtg acgttgtcac
     9061 ttatccgtgc gccatcgctg atatcagcgc gatcaatcca gacgttatcg cctattcgca
     9121 cgttattgta gagcgtgcac ggctgcgtga tacgcgcgtt acccgtaatt tccgtgcccg
     9181 caaaggccat cgcgttttca tcataaatcc agcaatcccc ctgttgtgac agcacattat
     9241 cggcatcaac ccagccgccg gaggttccgg ctttaacatc gttaaaatcc gttacggcaa
     9301 taacttgtcg taataagacg cttttcttct caccgtctac ctgataagta aaagcacgag
     9361 gttcttcact cagtcgatat ttgatcatag ggaaattccg tgtgaacgat taagataacc
     9421 gtagcaaagg tactggcgaa acaaccagaa attccataaa atgcatttca aatatacttt
     9481 ataaattaaa caaaatgtgt aatcacaagc agagcgatcg cgtgctcaat ctgcctgcgg
     9541 gctattttgg catcgtcctt ggcactatcg gtatgggatt cgcctggcgt tatgccagcc
     9601 agatatgggc aataagccac tggcccggcg acatcatggt gatcctggcg atgattattt
     9661 gggcactctt gaccctggcg ttccttagcc gtctggtgcg ctttccccat agcgtgatgg
     9721 ctgaagtgcg acatccggta atgagcagtt ttgtcagcct gtttcccgcc accacgatgc
     9781 tggtcgcgat cggtttcgtt ccctggtatc gcccgttggc cgttgcgcta ttcagcgtgg
     9841 gggtcgtcat acaactggcg tatgccgcct ggcagacggc gggtctttgg cgcggagcgc
     9901 atccggaaga agcgacaacc ccaggacttt atctgcccac ggtagcgaat aattttatca
     9961 gcgctatggc ctgtggagcg ctcggttaca atgatgccgg actggtgttt ttaggcgcag
    10021 gcgtcttttc gtggttaagt ctggaaccgg ttattttgca gcgactgcgt agctgcggcg
    10081 aattaccggc ggtgctgcgt atgtcgctgg gtatccaact ggcgcccgcg ctggtcgcct
    10141 gtagcgcctg gctgagcgtc aatggcgggg agggcgacac gctggcgaaa atgctattcg
    10201 gctacggtct gttacagctt ttatttatgc tgcgattaat gccctggtat ttatcacaac
    10261 cgtttaatgc ttccttctgg agtttttcgt tcggcgtttc cgcgctgacg accacggggt
    10321 tacatcttgg tcacggtagt gaatcagggt ttttccatat tctggccgtc ccgctgttta
    10381 ttttcactaa cgctattatc gccttattgc tggttcgtac atttctattg ctggtgcagg
    10441 ggacgttgct tattcgcact gagcgcgctg cactgttgaa aacggaggaa aaaaatgacc
    10501 gttcgtgacg aaaattactt tactgagaaa tacggtttaa cccgcacgca ttcggatgtg
    10561 ctggcggcgg caaaggttgt cgcgccaggc cgaacgctgg atttgggatg tggcaatggc
    10621 cgtaatagtc tgtatctggc cgcgaacggt tatgacgtta ccgcgtggga taaaaatccg
    10681 gccagtatgg ctaaccttga gcgtattaaa gcggcagaag ggctggataa tctgcaaacc
    10741 gaccttgtcg atctgaatac attgaccttt gacggcgaat acgattttat tctctcgaca
    10801 gtggttatga tgtttcttga ggcgcaaacc attcccggtt taattgccaa tatgcaacgc
    10861 tgcacaaaac ccggcgggta taatttgatt gttgcggcaa tggatacgcc gggctttccc
    10921 tgtacggtgg gattcccgtt cgcttttaaa gaaggcgaat tacgccgcta ttacgaagga
    10981 tgggacatgc tgaaatacaa cgaagatgtc ggcgagcttc accgcacgga cgaaaacggc
    11041 aaccgtatca aactgcgctt tgctacgatg ctggcgagaa aaacggcctg agcgatgcaa
    11101 gttctgtaag tcttgctgcg ttcggcattt ttttgtcggg cgccgcgttc aaattgtgct
    11161 gtcgttacca tttttagtgc atccagaatg atttcgtttt gctattattt cctttgcatc
    11221 attgcgaaga ctaaagggat cgtttcatgc gtactcatac tttatttaaa gttgcagtgc
    11281 ttactggctt gctggcgtta tccggctgtg cgtctaaagt cacacagccg gataagtatt
    11341 ctggattctt aaaaaattat tcggacctga aggagactac ttccgccacg gggaaaccgg
    11401 tgttgcgctg ggtagatcca cattttaatg actctaacta tgacagtatt gtttacaatc
    11461 cgataacata ttaccccatc cccaagccaa cgacccaggt cggacagcaa gttcttgata
    11521 aactgctggc ttatacgaac actaaagtaa aatcagcaat tgaacagcgc aaaccgctgg
    11581 tcacgacggc agggccgcgc agtttgattt tccgcgaggc gattacgggc gtggatacca
    11641 gcaaagaagg gctgcaattc tatgaggtga tccctgtagc gctgattgtg gcgggcacgc
    11701 aaatggcgac gggccaccgg accatggata cccacctcta ttttgagggt gagctgatag
    11761 atgccgcgac caacaagccg gtcgtcaagg tagtgcgcca gggcgaaggt aaagacctga
    11821 gtaattccag tacgccaatg gcgtttgaga cgttgaaaca ggttgtggat gatatggcga
    11881 cggatacctc tatgtttgac actaacaaaa aataattctg cggcgccatc gcaagatggc
    11941 gcaaaccccg gcagattagc ggccgccatc agccagacaa cgacgggcgg cgcgttctcg
    12001 ttaatattgc gtagcctatc ccgccagcga tcaaccccca gaatgccgat ccgatgccca
    12061 tcagcgttag cccgctggcg gtgacgagaa atgcgataac tgccgcgtca cgctcacttt
    12121 cgtgagtaag cgcctgatac agactaccgc taatcgtact taacagtgcc agaccagcca
    12181 gcatttgcac ccagctaacc ggtagggcga ccatcagctc ggttatcgaa ccgccaaacc
    12241 acccggcaag taaataaaaa acgcctgcgg cggcggccgc taaccagcga cgcgttggat
    12301 cggggtgcgc gtccgggctt tgacaaatgg cggctgtaat ggcggcaatg cagatagaat
    12361 aaacgccaaa cggcgaaagc agcagcgcca gtaatccggt aaaaatcatt aacggagaga
    12421 caggaagctg atagccagac gccttcattg tggcgacgcc gggggcgttt tgcgatgcca
    12481 tcgtcaccag gaagagcggt accgcgacgc tcaggctttg agcgaatgaa aagtgggggg
    12541 gaacgaaggt gggccacacc ggcgcgaaat gaataccgct catcgccatc ttaccctgga
    12601 tgagcgccac cgttattccc atcaccatgg cagcaataac ggcatagcgg ggcgcgaata
    12661 ctttaaagag tagccacgcc aatagcatac cgccgcacat gacaaactct ccgttgagcg
    12721 tcccgaacgc ctgcaggccg aagcgtagca gtattcccgc cagcattgcg gcggcaagag
    12781 aatgggggat tatccgcatc aaacgcgcaa acaatcccgt gacgccgcac agcacaatca
    12841 gggcattggc gacaatgaat atgcccacgg cgtctggcaa cgataatccc tgaagccctg
    12901 tcaccaacag agcggcgcca ggcgttgacc aggcggttaa aaccggcgca cgataccaca
    12961 aggttaacgt tagtgtgctt atgcccatgg ctataccgag ggcggtcatc cagccggcga
    13021 tctctgcggg tgttgcgcca gcggcaagcg ccgcctgcca gataatggcg gcggaacttg
    13081 catagccgac cagaacggcg accagaccag ataatacagt aggtaacggc agtgataaca
    13141 gacgcatgat cgcctcttgt gcgttataac ggtcagtcaa tgtagcattg tgcgttatag
    13201 cgtacaagtg atacgctatg gccttacagg ggggaaaaat ggataacctg acacactatc
    13261 tggcgaccac gttaagaacg ttacgccatc agcgaggctg gagtttatca cgtctggcgg
    13321 agatctccgg cgtctcaaaa gccatgttgg ggcagataga gcgtaatgaa tccagtccga
    13381 cagtcgcaac gctgtggaaa attgcgacgg gcctgaacgt tccattctca atgtttattt
    13441 cgccgccgca ggccgaattt cctccaacct tcgatcccca gcagcaagcg atggtaatca
    13501 caccgctgtt tccgtgggac cctgaactct gttttgacta tttttcccta ttgctggcgc
    13561 ctggcgcggt cagcgaatca acgccgcata aagccggcgt tatcgaacat gtggtggtga
    13621 ttcagggtcg gctggacatg tgtactggtg gggtatggca aaccatagac gccggtaaag
    13681 gtttgcgttt tgccggcgat acggcgcata cctatcgcaa cagtagtgac cagacggttc
    13741 attttcactc gctgatccat tacccacgtg attaagcggg aaaactattt cgttagtttg
    13801 cgcttctgac tacaatagcc gccatttcgc tgctattgga taagaaagac tgtatgcgcc
    13861 agcaacctca ctatctcgaa ttgttaagcc cggcccgtga cgccgcaatt gctcgcgaag
    13921 cgattttgca tggcgcagat gccgtctaca tcggcggacc cggttttggc gcacgtcata
    13981 acgccagtaa cagtctgcgc gatatcgccg atctggtccc gtttgctcac cgttacggcg
    14041 ccaggatttt tgtcacgctg aatactatcc tgcatgatga tgagctggag cccgcgcagc
    14101 ggttaatcac cgatttgtac aataccgggg tggatgcgct gattgtgcag gatatgggca
    14161 ttctggaact ggatatcccg ccgattgagc ttcacgccag tacacagtgt gatattcgca
    14221 gcgtggaaaa agcgaagttt cttgccgatg tcggtttttc acagattgta ctggcgcgcg
    14281 agcttaattt gagtcagata gcggctattc atcaggctac tgacgccacg attgagttct
    14341 tcattcatgg cgcgctgtgt gtcgcttatt ctggacagtg ttatatctct catgcgcaaa
    14401 ccgggcgcag cgccaatcgg ggcgactgtt cgcaggcctg tcgcttaccg tatacgttaa
    14461 aagacgatca ggggcgggtg gtctcttacg aaaaacattt gctatcgatg aaagataacg
    14521 atcaaacggc taaccttggc gcgttgatcg atgcaggcgt acgttccttc aagattgaag
    14581 ggcgctacaa agacatgagc tatgtcaaaa acatcaccgc gcattatcgt cagatgctgg
    14641 acgcgattat cgagcaacgt ggcgatctgg cgcgtgcatc ggttggtcgg accgagcact
    14701 tttttgttcc ctccacggag aaaaccttcc atcgcggcag caccgactat tttgttaacg
    14761 cgcgtaaagg cgatattggc gcatttgatt caccaaaatt tattggcttg ccggtaggcg
    14821 aggtgctgaa tgtggcgaag gattatctcg acgtagaagc gacggagccg ttggcgaatg
    14881 gcgatggtct gaacgtgttg attaagcgtg aagtggtggg ttttcgcgcc aatacggtgg
    14941 agaaaaccgg tcataaccgc taccgcgttt ggccaaatga tatgcctgcc gacctgcata
    15001 aagtccgtcc gcatcatccg ttgaatcgta atctggacca taactggcag caagcgctga
    15061 caaaaacctc cagtgagcgc cgtgtggcgg ttgatatcat gctgggcggc tggcaggaac
    15121 agcttattct gacactgacc agtgaagacg gtgtctgcat cacgcatacg cttgacgggg
    15181 tatttgagga agccaacaac tctgaaaaag cgttgaataa cctaacagcc ggactggcga
    15241 agctgggaca aacgctttac tacgcgcgtg atatgcaggt gacattaccg gcggcgttgt
    15301 tcgtgccaaa tagcctgctc aatcagttcc gtcgggaggc gattgatatg cttgacgcgg
    15361 cgcggctggc ccattatcaa cgaggtcgtc ggaaacccgt ggcgcagcct gcgcccgtct
    15421 atccgcaaac gcatctcagc tttctcgcta atgtctacaa ccacaaagcg cgggaatttt
    15481 atcaccgtta cggcgtacaa ttgattgatg cggcctatga ggcgcatcag gagaagggcg
    15541 aggtaccggt catgatcacc aaacactgcc tgcgttttgc gttcaacctt tgtccaaagc
    15601 aggcgaaagg aaatattaag agctggaaag ccacgccgat gcagttggtg catggtgatg
    15661 aggtactgac gctaaaattc gactgccgcc cttgcgaaat gcatgtcatt ggcaaaatta
    15721 aaaaccacat cttaaaaatg ccccagcccg gcagcgttgt cgcttcagtg agccctgaag
    15781 cgctgatgaa aacgctgctg aagcgcaggg gcgtttaatt aacgaaaata gctctctggt
    15841 ttgcgcgatt tctgccagtt gtggtgctcg cgcaagcctt ccgcggattc ttccgctgcc
    15901 gcccgtaatt catcgctgtc ggcttcgtgt ctaagctggt gccctcccgt cgcaaaccat
    15961 acgaatgcgt ggtcttgctg tttcgccagt aactggcctg aaaatagcgc acaggtcagt
    16021 aaaactactg ataacgtttt tgtaagcatc atg
//
LOCUS       DAJVSD010000086        16050 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.086, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000086 DAJVSD010000000
VERSION     DAJVSD010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 16050)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16050)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16050
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.086"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..343)
                     /gene="sifB"
                     /locus_tag="OQP62_002229"
     CDS             complement(<1..343)
                     /gene="sifB"
                     /locus_tag="OQP62_002229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-2 type III secretion system effector SifB"
                     /protein_id="HCS1721770.1"
                     /translation="MPITIGRGFLKSEMFSQSAISQRSFFTSLWEKIKDFFCDTQRST
                     ADQYIKELCDVASPPDAQRLFDLFCALYELSSPSCRGNFHFQHYKDAECQYTNLCIKD
                     GEDIPLCIMIRQ"
     gene            872..1270
                     /locus_tag="OQP62_002230"
     CDS             872..1270
                     /locus_tag="OQP62_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine dipeptidase"
                     /protein_id="HCS1721771.1"
                     /translation="MKKSDGEIHEKTASWGILQSEWLRKCGRLLLLLLYRFVIGWAFF
                     QLLAMIVAGIFLLGVLLFHPIIFVQTIAITEKLNHASLDLWHILKLCLWHYGIIAGFI
                     FMAECTLSKSIRQVQRLSKKFGAQDFSSRP"
     gene            1303..1533
                     /locus_tag="OQP62_002231"
     CDS             1303..1533
                     /locus_tag="OQP62_002231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_448018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721772.1"
                     /translation="MAMTSRPNYLGSRGILCVCTTAVNRNFSALSPTIDVFLTNCLPD
                     YIVVLSLAKQCYLVMEGDNNCTIDYQISFLVR"
     gene            1796..2566
                     /locus_tag="OQP62_002232"
     CDS             1796..2566
                     /locus_tag="OQP62_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HCS1721773.1"
                     /translation="MVKCVSSFLLFSLLSVQAISAENHIDLHQPKDFVDITTVAPDVQ
                     VDMRYFTSHNFIGRPIKGYNAPVCLLTRPAANAVKQVADRLRPFGLTLKIYDCYRPQS
                     AVNDFIAWAKDPSQNQMKNEFYPQVEKNRLFEEGYLAARSGHSRGSTLDLTIVPLDSK
                     IPIYHPGRPLVNCTASAAQRSPDNSLDFGTGFDCFSPLSHPDNVMLTAQQRANRLLLQ
                     TLMRDAGFTPLDTEWWHFSLTHEPYPNTWFDFPVKQRP"
     gene            2702..4126
                     /locus_tag="OQP62_002233"
     CDS             2702..4126
                     /locus_tag="OQP62_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HCS1721774.1"
                     /translation="MKKYQRLAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVG
                     HAYQLLESQGRIIARPQSGYYVAPHPVCRSVATAAHVIRDEAVDINTYIFEMLQASRD
                     TSVVPFASAFPDPRLFPLPQLNRSLAQVSKTETAMSVIENLPPGNAELRYAIARRYAQ
                     QGITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALERLRLKALSI
                     PTDVKEGIDLMALEQALQEYPVKACWLMTNSQNPLGFTLSAEKKARLVALLTHHNVTL
                     IEDDVYSELYFGREKPLPAKAWDRDDTVLHCSSFSKCLVPGFRIGWVAGGSHARQIQR
                     LQLMSTLSTSSPMQLALVDYLSTRRYDAHLRRLRRQLAERKQQAWQTLLRHLPAEVKI
                     HHNDSGYFLWLELPEQLDAGELSAKALEHLISIAPGKMFSTSGAWTRFFRFNTAWHWG
                     EREEQAVKQLGSLIREMLSAKSLV"
     gene            4241..5686
                     /gene="patD"
                     /locus_tag="OQP62_002234"
     CDS             4241..5686
                     /gene="patD"
                     /locus_tag="OQP62_002234"
                     /EC_number="1.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460556.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminobutyraldehyde dehydrogenase"
                     /protein_id="HCS1721775.1"
                     /translation="MTIWENAMQYQLLINGVLVDGEGERQSVYNPATGEVILEIAEAS
                     PVQVDAAVLAADSAFAEWGQTTPKARAECLLKLADSIEQNALEFARLESQNCGKPLHC
                     VINDEIPAIVDVFRFFAGAARCLSGLAAGEYLEGHTSMIRRDPIGVVASIAPWNYPLM
                     MAAWKLAPALAAGNCVVIKPSEITPLTALKLAALAKDIFPPGVLNVLFGRGQTVGDVL
                     TGHEKVRMVSLTGSIATGEHILRHTAPAIKRTHMELGGKAPVIVFDDADLDAVAQGVR
                     TFGFYNAGQDCTAACRIYAQRGIYDALVEKLGNAVSSLKMGAPEDKSTELGPLSSLAH
                     LKRVTAAVEEAKALSHIRVITGGSQTEGKGYYFAPTLLADAKQEDAIVQREVFGPVVS
                     ITVFDDEDQVLRWANDSRYGLASSVWTQDVGRAHRLSARLQYGCTWINTHFMLVSEMP
                     HGGQKQSGYGKDMSLYGLEDYTLVRHIMVKH"
     gene            complement(5791..5886)
                     /gene="yncL"
                     /locus_tag="OQP62_002235"
     CDS             complement(5791..5886)
                     /gene="yncL"
                     /locus_tag="OQP62_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001103198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response membrane protein YncL"
                     /protein_id="HCS1721776.1"
                     /translation="MNVSSKTVVLINVFAAAGLLGLISLRFGWFA"
     gene            6024..6122
                     /locus_tag="OQP62_002236"
     CDS             6024..6122
                     /locus_tag="OQP62_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001173343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GhoT/OrtT family toxin"
                     /protein_id="HCS1721777.1"
                     /translation="MSNKKSILRAFFPLVGATWPISFPVALLFSLF"
     gene            complement(6167..8314)
                     /locus_tag="OQP62_002237"
     CDS             complement(6167..8314)
                     /locus_tag="OQP62_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence effector SrfC"
                     /protein_id="HCS1721778.1"
                     /translation="MTKPLNATQAVIEWVNNTRRYATRLDDEADALLAQLTLAAADES
                     ALNAACASSHGCVGLYGYAQSAKAHLLTTLCGNENGKLEIITPDRDYDYFSHINPGHA
                     PANMAIRFTRDIFSNESGWPLRLRLISEAELVQIFIAWTSSSPVCRQVEKSIITSRLE
                     KWQSLRQPQPVPGVTAEEVATIASFWRSCLPSARQHIDDATWQHFASLLPALDLTTRA
                     HAWALLWGEQPEITQQWLALAHMLQQTGHAGELAAPLSLLVDHFGLPAENFLTQMALT
                     ASDTQSDVVVHPVKEGRLLNAVSLSLDSLALLTRELVLTVENSVLDNVDLLDIPVAPD
                     SHPHPLWRAKLGWMLAHYRQQIQPDVLVICNALASRSQTSTAARHLLEWVNATQPQHE
                     SALPGVVWAITPQDARFATQQNLDEAVQQLMGKPGVHWGTLQALDKHSMQRLVEWLSQ
                     ATSAPQRQARLQALREQLRGRVRDLLPMCDDARLPVETVIRRLQAQAARHGDLLAGLL
                     PPVQNFEALLRTRQSREEQVSGLFNDAIDLFADEPTHASASEGHETGYQAHKMWINHL
                     RQWAHCRDNAQRLGLEPQMLNAVAEILITASYRLGLPQQLQKTMQREEVSGAQLHAII
                     GNFIAWLGYANIEEAQRPASRVQKGAAIFAATPRSTMLRLTKLDEQPVHAASRYVYDW
                     LVALYTLANENAGYRHPQDVTDVDRAQLIALIA"
     gene            complement(8311..11292)
                     /locus_tag="OQP62_002238"
     CDS             complement(8311..11292)
                     /locus_tag="OQP62_002238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor SrfB"
                     /protein_id="HCS1721779.1"
                     /translation="MLVNLCDYKQSVTLIANSGVQFLDFGLTPQESAHYGRFVRKTAN
                     GPLLRLDFDLTSGRYTLPGRAGGQPEVVKPESTQTLHYSLDVLDGIWLPLPFLRFNPP
                     RTFIDGPDNWARIQVRKLSEPDSAGNTHRITLAFDSQLAKNMPAALAPCENDLLNGTR
                     FALAWRDEEVADFLDQTWIDGWLRESFLQYASQVENRPEQAIQQALRSFEYQAHWLNL
                     LTLLGEQLTVPEVKFVTHTLSTPAIPVDLILDVGNTHTCGVLIEDHGDANDGLRQTAE
                     LQVRSLSEPQYLNDPLFTSRVEFSEARFGKQHFSVESGRDDAFVWPSIVRVGDEARAL
                     AMQRVGTEGSSGISSPRRYLWDETPALQDWRFSQIHGKTQREPLATAFPLMNLMNDDG
                     QPLFRLPHEERLPVFSPQYSRSTLMTHMLCEILAQALGQINSVATRLRLGFPASPRQL
                     RTLILTLPSAMPKQEREIFRQRMFEALALVWKAMGWHPQDEDFTTPKQREKSVVPVPE
                     IQMEWDEASCGQLVWLYNEAISHYAGRTESFFNALARPDRQPEPGVVPGRALRVASID
                     IGGGTTDMAIVHYQLDDGVGANVKITPHLLFREGFKVAGDDLLLDIIQRCVLPSLQTA
                     LQRAGVTDAAALLATLFGDSGRIDTQAILRQQTALQLFMPLGHAVLSAWEQSDINDPF
                     AGLHATFGDLLIRRPTSNVMNYIQQAIDHALPSGSPTFDIFNVPLQIQFSQLQEALLA
                     GQFTLTTPLHAVCEAISHYHCDILLVTGRPTCLPGVQALIRHLQPVPVNRIVWMDKYQ
                     VHEWYPFSQQGRIGNPKSTAAVGAMLCSLALDLRLPRFNFKAADIGAYSTVRYLGVLD
                     NTVNTLRDENIWYHEIDLDKPGATLDARLHFPLRGNVTLGFRQLANSRWPATPLYCLS
                     INSAELAKTIAGDGVLNVRLKLRGSSKDSAPESFILSDAWLQDGTPVAADALTLKLNT
                     LADRRHSGSHYWIDSGSVYLK"
     gene            complement(11297..12622)
                     /locus_tag="OQP62_002239"
     CDS             complement(11297..12622)
                     /locus_tag="OQP62_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ssrAB-activated protein"
                     /protein_id="HCS1721780.1"
                     /translation="MAKSLLRSGNLDDYQAVGGGGQAVFESALQIRETLRLRKQQTMV
                     DCLAIPQLNDNGDRVDWYSPIEGQAIAWKAADEETRSRALRYLASTFESAAALSRKSL
                     QSGKTALQLFGSLLEKATQFPGENHVFLVNGKPVITFWGFVNLNENTRDDVLDCLRVT
                     EAISDIPLVEPEPQPEEKPLVEAAFSQADEPLLTSVIEPPKMPEEPAAPPVIVSEPKP
                     AAPIPVAEAKRARRLPLWSLPVAAVVIAAVATPFFWPSSSVDGASPVRTAPVATAKTD
                     VTPMPELTAHLPLHRAEVTSAPKAAPLPEAPVIIAAIPKDALVMDNTQMKLGTTRFLN
                     GSWRVSVDVKDPITGKPPSLRYQIQNNKGIARVVHGDNVVCRAEIFSGLHQTGELMIK
                     SRGNARCTDGSRYPMPEITCKAGVNDVATCTARYGDHAAIPLTFKKIGA"
     gene            12846..13079
                     /locus_tag="OQP62_002240"
     CDS             12846..13079
                     /locus_tag="OQP62_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2526 family protein"
                     /protein_id="HCS1721781.1"
                     /translation="MSHLEEVSARVDAAIAESVIAHMNELLIALSDDAELRHEDRYVQ
                     QQRLRTAIAHHGRQYQEDRDARREQLTKGGTIL"
     gene            complement(13084..13533)
                     /locus_tag="OQP62_002241"
     CDS             complement(13084..13533)
                     /locus_tag="OQP62_002241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1721782.1"
                     /translation="MNQSLTLIFLIAAGVGLVVQNSIMVRITQTSSTILIAMLLNSLV
                     GIVLFVTILWFKQGATGFGELVASVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAV
                     LVASQLIGGLALDIARSHGVTLRAMVGPAFGALLLVIGAWLIAKRQF"
     gene            complement(13533..14048)
                     /gene="mddA"
                     /locus_tag="OQP62_002242"
     CDS             complement(13533..14048)
                     /gene="mddA"
                     /locus_tag="OQP62_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine sulfoximine/L-methionine sulfone
                     acetyltransferase"
                     /protein_id="HCS1721783.1"
                     /translation="MTIRFADKADCAAITEIYNRAVLHTAAIWNDRTVDTDNRLAWYE
                     ARQLLGYPVLVSEENGVVTGYASFGDWRSFDGFRYTVEHSVYVHPAHQGKGLGRKLLS
                     RLIDEARRCGKHVMVAGIESQNAASIRLHHSLGFTVTAQMPQVGVKFGRWLDLTFMQL
                     QLDEHAAPDAC"
     gene            14260..15297
                     /locus_tag="OQP62_002243"
     CDS             14260..15297
                     /locus_tag="OQP62_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001517827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HCS1721784.1"
                     /translation="MKQQTNRNRRWVLASRPHGAPQMDNFRLEEDDVATPGEGQVLLR
                     TVFLSLDPYMRGRMSDEPSYAPPVEPGCVMVGGTVSRVVASNHPDYRPDEWVLSYNGW
                     QDYDISDGEGLVKLGDNPQHPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATG
                     PVGATVGQIGKLKGCRVVGIAGGAEKCRHATDVLGFDLCLDHHADNFPQQLAQACPQG
                     IDIYYENVGGKVFDAVLPLLNTSARIPLCGLVSGYNATTLPDGPDRLPLLMATLLKKR
                     IRLQGFIINQDYGHRIHEFQQEMGRWIKEGKIHYREQITDGLENAPEAFIGLLAGKNF
                     GKVVIRLADDA"
     gene            15631..>16050
                     /gene="mcbR"
                     /locus_tag="OQP62_002244"
     CDS             15631..>16050
                     /gene="mcbR"
                     /locus_tag="OQP62_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid/biofilm transcriptional regulator
                     McbR"
                     /protein_id="HCS1721785.1"
                     /translation="MPGTEKTQHISLTTQVENRLKHQLSIGALKPGARLITKNIAQEL
                     GVSITPVREALLRLVSSSALAVAPAQAFMVPEISLESLLEINTIRTALEEMAVVAAAG
                     KITPDREQTLNALLDEFQQALESGVMEKILLANRAFRF"
BASE COUNT         3872 a         4055 c         4306 g         3817 t
ORIGIN      
        1 cctgacgtat cataatacat aacggaatat cttcgccatc tttaatacag agatttgtat
       61 actgacactc agcatcttta tagtgctgaa aatggaaatt tcctctgcat gatggtgatg
      121 ataattcata taacgcgcaa aataaatcaa ataaacgttg cgcgtcaggc ggagaggcaa
      181 catcacataa ttcctttata tattgatcgg cagtggatct ttgcgtgtca caaaaaaaat
      241 ctttaatctt ttcccatagt gacgtaaaga aggagcgttg agagatagca ctttgagaaa
      301 acatctcact ctttaaaaat cctctcccga tagtaattgg cataatgtag accacaagtg
      361 attatatgat acttcattac tggaataggt ggtattcgaa atattatccc atgttgccca
      421 tcggtttgcc tatcggtgaa acacctgatt tttgctttgt cctgaaccgt caacattatt
      481 gttaaaatcg acccgtggct ttagtcagtc cacgcctcct ggccatgaag tatgtcaggt
      541 aaaacgaatg aaagtaaaat ggttttctta attctcacat catcatatac catgagtaat
      601 gtttaattac acgctatatt atttttagag aaagtaaatt gttgctcaac cgtgtacaaa
      661 ttgtcttata agaagttaaa ctgaaagtat tattaggcta acaacaatga gatatttagc
      721 ggcagggcag gaggcctatg ctgatagtac ttatgatata aatgccttta ctctttagtt
      781 tttgtcttaa ttatatttgt tgtaacgatt agctgacggg tttatttcca gttaggtgat
      841 aaaattataa aaacctgcga ggaggctcaa aatgaagaaa tcagatggtg aaattcacga
      901 aaagacagca tcctggggca ttttgcagtc agaatggcta agaaaatgtg gacggctatt
      961 attgctgtta ctttaccgtt tcgttatcgg atgggctttt ttccagttac ttgccatgat
     1021 cgtggcaggg atatttttgt taggcgtctt attatttcat cccataatat ttgtacagac
     1081 tatcgcaatt actgagaagt taaatcatgc ttcgcttgat ttatggcata tccttaagtt
     1141 atgcctgtgg cattacggta tcatcgcagg gtttattttt atggcggagt gtacgttaag
     1201 taaaagtata cggcaggttc agcgcttgtc caaaaaattt ggggcacagg atttttcttc
     1261 acgcccgtga tccgccgctg caacctgcgg tcttactgaa taatggctat gaccagcaga
     1321 ccgaattatc tcggttcgag ggggattcta tgtgtttgca caactgcagt gaatcgtaat
     1381 ttcagtgcat tatcgccgac aatcgacgtg ttcctcacta attgccttcc tgactatata
     1441 gtggtcttat ctttggcgaa acaatgttat ttagttatgg aaggcgacaa caactgtact
     1501 attgattatc aaatatcctt tctggtcagg tagactcgcc tttgtgaaaa catatcgtta
     1561 tctgtgctcc tggggactca ctcccttgcc gcctttaagc aactcgaatt attttgggta
     1621 tagaacaggc ggcgtaatgg ccataataag caaaatataa cctctccgtt tgtaataagg
     1681 cacagattac agggggggaa tgatgtttat tttaaccatc tgtttaagcg ctgtccgcta
     1741 atctttacct gctcaaatac ataatcaccc ctgtgactct cgcgaggtgt aacatatggt
     1801 aaaatgcgta tcttctttcc tcctgttcag cctgttgtcc gttcaggcaa tatcagctga
     1861 aaaccatatt gatctccacc agccaaaaga ctttgtcgat attactacgg tcgcccccga
     1921 cgtacaggta gacatgcgat acttcacttc ccataacttt attggtcgcc ccattaaagg
     1981 ctataacgcg cctgtttgcc tgttaacacg accagccgcg aacgcagtaa agcaggtcgc
     2041 cgatcgttta cgccccttcg gacttacctt aaaaatatat gattgctacc gtccgcaaag
     2101 cgcagtgaat gactttatcg cgtgggccaa agatccttct caaaaccaaa tgaaaaacga
     2161 attttatccg caggtagaga aaaatcgttt gtttgaggaa ggttatcttg ccgccagatc
     2221 cggccacagt cggggaagta cgcttgatct aacgattgtt ccacttgaca gtaaaatacc
     2281 gatataccat cccggacgac cactggtgaa ttgtactgcg tccgcggcgc aacgctcgcc
     2341 agataatagt ctggattttg gtacaggctt tgactgtttt agtccgttat cccatcccga
     2401 taatgtcatg cttaccgctc agcaacgcgc aaataggttg ttattacaaa cattgatgcg
     2461 tgatgcgggt tttacgccac tggatactga atggtggcac ttctccctta ctcatgaacc
     2521 atacccgaac acctggtttg actttcccgt taagcagaga ccctgaaacg gcgttttgtt
     2581 gcgaaatcta atcattacgc ctgttggaaa gcaccataac agttagcaaa tcattgttaa
     2641 ttttaacaac tgatatacac tgcggttgcc acctgcaagc agcgctcaat gagaacgaat
     2701 aatgaaaaaa tatcaacgtc tggcggagca aattagagaa caaatcgcct ctggcgtttg
     2761 gcaacccggc gatcgattac cctcgctgag ggagcaggtc gccagtagcg gcatgagttt
     2821 tatgactgtc ggtcatgcgt accagttgct ggaaagtcag ggacggatta tcgcccgtcc
     2881 gcaatctggt tattatgtcg cgccgcatcc ggtttgtcgg tcagtcgcga cggcagcgca
     2941 cgttattcgg gatgaagccg tagatatcaa tacctatatt tttgagatgc tgcaggcgag
     3001 ccgtgatacc tctgtggtgc cctttgcctc agcgtttccc gatccgcgtc tgtttccctt
     3061 gccgcaattg aaccgctctc tggcgcaggt cagtaaaacc gagacggcaa tgagcgtcat
     3121 cgaaaacttg ccgccaggta atgcagaatt gcgctatgcg atagcacgcc gttacgcgca
     3181 gcaggggatt accgtttctc ctgacgagat tgtcattacc gccggcgcgc tggaagcgtt
     3241 gaatcttagt ttacaggcgg tgacggcacc gggagactgg gtggtggtgg agaacccctg
     3301 tttctacggt gcgctacagg ccctggagcg attgcgcctg aaagcgttgt cgatacctac
     3361 cgatgttaaa gaaggtatcg atcttatggc gctggaacag gcgttacagg aatatccggt
     3421 gaaagcgtgc tggttaatga ccaacagcca gaatccgtta gggttcacgc tgagtgctga
     3481 gaaaaaagcg cggctggttg cgttactcac gcaccataac gtgacgctaa ttgaagacga
     3541 tgtttatagc gaactctact ttggccgcga gaaacctctt cctgccaaag catgggatcg
     3601 cgacgatacc gtgttgcatt gttcgtcttt ttccaaatgt ctggttcccg gttttcgcat
     3661 tggctgggtt gcgggaggaa gccatgccag acaaattcag cgtttgcagt taatgagcac
     3721 attatccacc agttctccca tgcaattggc gttagtagat tatctctcga cacgtcgata
     3781 tgacgcgcat ctgcgccgat tgcgaaggca gcttgccgaa cgtaaacagc aagcctggca
     3841 aacccttttg cgccatctcc cggcggaagt aaaaattcac cataacgata gcggttattt
     3901 tctttggctg gagctacctg agcagcttga tgccggcgaa cttagcgcca aagcgcttga
     3961 acaccttatc agtatcgcgc cagggaaaat gttttcaacg tccggcgcct ggacgcgttt
     4021 ctttcgtttt aacaccgcat ggcattgggg agaacgggaa gaacaggccg taaaacagct
     4081 tggaagcctg attcgcgaga tgctgagcgc taaaagcctt gtgtgaggtg gaatgcgtgt
     4141 cagctcacaa cctgactaaa tttcccgagt gtgccgggtg agcatctggc gcgccgtcta
     4201 tttttaggaa agcggcggcc cgttcgccgg aaatcgatta atgacgatat gggaaaatgc
     4261 tatgcaatat caattactga ttaatggcgt gctggtggac ggcgagggag aaaggcagtc
     4321 cgtttataac ccggcgacag gcgaggtcat acttgagatt gcggaagcgt cgcccgtgca
     4381 ggttgacgcc gcagtgctgg ccgccgatag cgcgtttgcc gaatgggggc agaccacacc
     4441 caaagcacgg gcggaatgtc tgttaaaact ggcggacagc atcgagcaaa acgcccttga
     4501 gttcgcccgg cttgaatcgc aaaactgcgg taagcctttg cactgcgtaa ttaatgatga
     4561 aattccggca atcgtggatg tctttcgctt ttttgccggc gcggcccgtt gtttgagtgg
     4621 gctggcggcg ggcgaatatc tggaaggaca tacgtcgatg atccgccggg atccgattgg
     4681 cgtggttgcc tctatcgcgc cgtggaatta tccgctcatg atggcggcct ggaagctggc
     4741 gccagcgctg gcggcaggta actgcgtggt gattaagcct tctgaaatca cgccgctgac
     4801 ggcgcttaaa cttgccgcgc tggcgaagga tatctttccg ccgggggtgc tcaatgtcct
     4861 gttcggacga gggcaaactg ttggtgatgt attgaccggc catgaaaaag tacgcatggt
     4921 ctctttaacc ggttctatcg cgaccgggga gcatattctg cgccatactg cgccagcgat
     4981 aaaacgtacg catatggaac tcggtggtaa agccccggtg attgtttttg atgacgccga
     5041 tctggatgcg gtggcgcagg gtgtccggac tttcggtttc tataatgccg gacaggattg
     5101 tactgcggcg tgccgtatat acgcgcagcg cggtatctat gatgcgctgg tcgaaaagct
     5161 agggaacgcg gtgagcagcc tgaaaatggg cgcgccggag gataagtcga cagagctggg
     5221 gccgttaagt tcgctggcgc acctgaagcg cgtcacagcg gctgtagagg aggcgaaggc
     5281 cctcagccat atccgtgtga ttactggtgg aagtcaaacg gaaggtaaag gttactattt
     5341 cgctccgacg ttgctggcag acgcaaaaca ggaagatgcc atcgtgcaac gcgaggtctt
     5401 cggcccggtg gtcagtataa ccgtctttga tgatgaagat caggttctga ggtgggccaa
     5461 cgattctcgc tatggtctgg catcctccgt ctggactcag gacgtcgggc gggcgcaccg
     5521 gcttagcgcc agattgcagt atggctgtac ctggattaat acccatttca tgttggttag
     5581 cgaaatgccg catggagggc aaaaacagtc gggatacggc aaagatatgt cattgtatgg
     5641 tctggaagac tacacccttg tccgccacat catggttaag cattaaggat catttactgt
     5701 tcagaaaaat cgtgaaaaaa taggcgggtg tcggcggaga gggggacctc cccgccaaca
     5761 tgcgcagcaa gtactcaaag gttgaacacc tcaagcaaac cagccgaatc tcaacgagat
     5821 cagacccaaa agtcctgcag cagcaaagac attaatcagc acgacggttt tactggaaac
     5881 attcattttc gccacctttc atcataaccc ctatgggtat agtacgggtt ggcgagatcc
     5941 gcaataatac gtaaacagga tattctgtga gcggagccgt gcattgagaa cgttttgctg
     6001 ttaaggctga taaaccttga tgtgtgtcaa ataaaaagag catattgcgc gcgttttttc
     6061 ctctggttgg cgcgacatgg ccgataagtt tccccgtcgc attgctgttt tcgcttttct
     6121 gacctcaagc ccgatacagg ttaccgggca tggtttttcc gccaggtcag gctatcaggg
     6181 caattaattg cgctctgtct acgtcggtaa cgtcctgcgg atgccgatat cctgcgttct
     6241 cattggccag ggtatacagc gcaacaagcc agtcatagac atagcggctg gcggcgtgaa
     6301 cgggctgttc gtcaagcttt gttagacgca acattgtcga acgcggcgtt gcggcgaaaa
     6361 tggctgcgcc tttctgaacg cggctggccg ggcgttgggc ctcctcgata ttggcgtagc
     6421 cgagccaggc gatgaagtta ccaatgatgg catgaagctg cgcgccgctc acctcctcgc
     6481 gctgcatggt tttctgtaac tgctgaggta aaccgaggcg atagctggcg gtaattaaaa
     6541 tctccgccac ggcgttgagc atctgcggtt ccagtcccag acgctgcgca ttatcccggc
     6601 agtgggccca ctggcgcaga tgattgatcc acattttgtg cgcctggtag cctgtttcat
     6661 gaccttctga cgctgaagcg tgcgttggtt cgtcggcaaa gagatcgatc gcgtcattaa
     6721 ataaaccgct gacctgttct tctcgcgact gtcgggtgcg cagcaacgct tcgaaattct
     6781 gtaccggcgg taacagcccg gccagcaggt cgccatgtct ggcggcctgg gcctgaagac
     6841 gccggatcac ggtttcaacc ggtagccgcg cgtcatcaca catcggtaac agatcgcgca
     6901 cgcggcctcg cagttgttcg cgtaacgcct gtaagcgcgc ctgtcgctgt ggtgccgatg
     6961 tcgcctgcga taaccactcc accaaacgct gcatactgtg tttatccagc gcctgcaacg
     7021 ttccccaatg cacgccaggt ttacccatca actgctggac ggcttcatcc agattttgct
     7081 gggtggcaaa acgggcatcc tgtggagtaa tagcccagac gacgccgggt aacgctgatt
     7141 catgctgcgg ctgcgtggcg ttaacccact ccagtaagtg acgggcggca gtggacgttt
     7201 gcgagcgaga tgccagagca ttgcaaatca ccagaacatc gggctgtatc tgctgacggt
     7261 aatgggccag catccagcct aatttcgccc gccataacgg atgaggatga ctgtctggcg
     7321 cgaccggaat atccagtaaa tcaacgttat ccagtacgct attttcaacg gttagcacca
     7381 gttcgcgggt aagcagcgcc agagaatcaa gcgaaaggct gaccgcattg agcagtcggc
     7441 cttccttaac cggatgcacc accacatcgc tttgcgtatc gctggcggtt agcgccattt
     7501 gcgtcaggaa gttttccgcc ggtaagccaa aatgatcgac cagcaggctg agcggcgccg
     7561 ccagttcccc ggcatggccg gtttgttgca acatatgcgc cagcgccagc cattgctggg
     7621 tgatctctgg ttgctctccc cacagtaatg cccaggcgtg cgcccgtgtc gtgagatcca
     7681 gcgcaggcaa gagcgaggca aagtgttgcc atgtcgcatc atcaatatgt tgtctggcgg
     7741 acgggaggca agagcgccag aaactcgcga tggtcgctac ctcttcagcg gtaacgccgg
     7801 ggacgggctg cggttggcga agcgattgcc atttctccag gcgtgatgtg ataatggatt
     7861 tttcgacctg gcgacaaacg ggggacgagc tggtccaggc aataaagatc tgcaccagtt
     7921 cggcttcact gatcaagcgc aggcgcaacg gccagccgct ctcgtttgaa aaaatgtcgc
     7981 gcgtaaagcg aatagccata ttcgctggcg catgacccgg attgatgtgg ctgaaataat
     8041 catagtcacg gtccggcgtg ataatttcca gcttgccatt ctcgttaccg catagcgtcg
     8101 ttaacagatg cgcttttgcg gattgcgcat acccgtacag accaacgcag ccatgtgatg
     8161 atgcgcaggc ggcgttgagc gctgactcat ccgccgcggc aagcgtaagt tgcgccagca
     8221 gagcgtcggc ttcgtcatcc agtcgcgttg cgtaacggcg cgtgttgtta acccactcga
     8281 taacagcctg agtggcgttt aacggttttg tcatttcagg tatacactcc cgctatctat
     8341 ccagtagtgg ctgccgctgt ggcggcggtc agccagcgta ttcaatttta atgtcagcgc
     8401 atcggcggcg accggcgtcc cgtcctggag ccaggcatca cttaatatga acgattccgg
     8461 ggcgctatct ttgctactgc cgcgtaattt cagtcggaca ttcagtacgc cgtcgccagc
     8521 gatggttttc gccagttcgg cggaattaat gctcaggcaa tagagtgggg tcgcaggcca
     8581 gcgactgttc gcaagttgac gaaagcccaa cgtcacgttg ccgcgtagcg gaaaatgcag
     8641 gcgtgcgtcc agcgttgcgc cgggtttatc caaatcgatc tcgtgatacc agatgttttc
     8701 atcgcgaagc gtattaacgg tattatccag tacgccgaga taacgcacag tcgaatacgc
     8761 gccgatatca gccgctttaa aattgaaacg cggcaggcgt aagtccagcg ccaggctgca
     8821 taacatcgcg cccaccgcgg cagtggattt tggattgccg atacgccctt gttgactgaa
     8881 gggataccat tcatgtacct gatacttatc catccacaca atgcgattaa ccggcaccgg
     8941 ttgtaagtgc cggatgagcg cctgtacgcc aggtaaacag gtcggtctcc ccgtcaccag
     9001 caagatatcg cagtgatagt gggagatcgc ttcgcagacc gcatgaagcg gcgttgtcag
     9061 cgtaaactga ccggccagca gagcctcctg aagctggcta aactggattt gcaatggcac
     9121 attgaatata tcaaatgtcg gcgaaccaga cggtaaggca tgatcgatcg cctgctggat
     9181 atagttcatc acgttgctcg ttgggcggcg gatcagcaga tcgccaaatg tcgcatgtaa
     9241 accggcaaac ggatcgttaa tgtcgctttg ctcccaggcg gaaagtaccg cgtggcccag
     9301 cggcataaat aattgcagcg ccgtttgctg gcgcaaaatg gcctgagtat caattcgtcc
     9361 cgaatcgcca aataaggtcg ccagcagggc ggcggcatcc gtaacgcctg cccgttgcaa
     9421 cgccgtttgc agggaaggga gtacgcagcg ctgaatgata tccaatagca gatcgtcccc
     9481 ggcgacttta aaaccttcgc gaaacaggag atgaggcgta atttttacat tggcccccac
     9541 gccgtcatct aactgatagt gaacgatcgc catatccgtc gtgccgccgc cgatatcaat
     9601 cgatgccacg cgcaacgcgc gtccggggac gacgccgggt tcaggctggc gatccggtct
     9661 ggccagcgca ttaaaaaagg attcggtacg cccggcgtaa tgcgaaatgg cttcgttata
     9721 aagccatacc agttggccac aacttgcttc gtcccattcc atctgtattt caggtactgg
     9781 caccacgctt ttttcacgct gcttaggcgt ggtgaaatcc tcatcctgcg gatgccagcc
     9841 catggctttc cagaccagcg ccagcgcttc aaacattcgc tggcggaaaa tttctcgctc
     9901 ctgtttcggc atggcggaag gcagcgttaa aatcagggta cgtagctggc gcggcgaggc
     9961 gggaaagccg agccgcagcc gggtggcgac gctgttaatt tgccccagcg cctgagccag
    10021 aatttcgcac aacatatgcg tcatcaaggt gctacggctg tattgcggcg aaaaaaccgg
    10081 tagcctttct tcatgcggca ggcggaataa cggctgtccg tcgtcgttca tcagattcat
    10141 cagcggaaac gcggtggcaa gcggttcgcg ctgcgtttta ccgtggatct ggctaaagcg
    10201 ccagtcctgc aaggcggggg tttcatccca caggtagcgg cgcgggctgg agataccgct
    10261 gctgccttcg gtgcccacac gctgcatagc aagggcgcga gcctcgtcgc ccacacgcac
    10321 aatagaaggc cagacaaagg cgtcgtctcg tccgctttcg acagaaaagt gttgcttgcc
    10381 aaagcgcgct tctgagaatt ccacccggct ggtaaataaa ggatcgttca gatactgcgg
    10441 ctcgcttaaa gaacgcacct gaagctctgc cgtctggcgt aagccgtcat tcgcatcgcc
    10501 atgatcctcg atcaagacgc cgcaggtatg cgtattgccg acatccagaa tcagatcgac
    10561 cgggattgcg ggcgtgctta acgtatgtgt cacaaacttt acttccggca ccgtaagctg
    10621 ttcgcctaac agcgtcagta aattcaacca gtgcgcctga tactcaaaac tacgcagcgc
    10681 ttgttgaatg gcctgttccg gacggttttc cacctgtgag gcatactgaa gaaacgactc
    10741 gcgcagccag ccgtcaatcc atgtctggtc aagaaaatcg gcaacttctt catcgcgcca
    10801 ggcgagcgca aaacgtgtgc cattgagcag atcgttttcg caaggcgcca acgccgcagg
    10861 catatttttt gccagctgac tgtcgaaggc gagggtgatg cggtgtgtgt ttccggcgct
    10921 atctggctcg ctgagtttac gtacctgaat gcgcgcccag ttatccggcc cgtcaataaa
    10981 ggtacgcggc ggattaaaac gcaggaacgg caggggaagc cagatcccgt cgagtacatc
    11041 cagagaatag tgcagcgtct gagtgctttc cggtttcacg acttcgggtt ggccgccagc
    11101 acgtcctggc aacgtgtagc gcccgctggt cagatcaaaa tcgaggcgca gtagcgggcc
    11161 gtttgccgtt ttgcgcacaa aacgtccgta gtgggccgac tcttgcggcg ttaagccaaa
    11221 atcaagaaac tggacgccac tgtttgcaat gagcgtgacg ctctgtttgt aatcacacag
    11281 attgaccaac ataaaatcag gcacctatct ttttaaacgt caacggaatt gccgcgtggt
    11341 cgccataacg ggcggtacag gttgcgacgt cattgacgcc tgctttacag gtaatttccg
    11401 gcatcggata acgtgaaccg tcggtgcagc gcgcattgcc gcgactttta atcatcagct
    11461 cgcccgtttg atgcagacca gagaaaattt ccgcccgaca aaccacgtta tcgccatgta
    11521 ctacgcgcgc gatgcctttg ttattttgga tctgataacg cagagagggc ggcttgccgg
    11581 taatcggatc tttgacatcc acgctgaccc gccagctacc gtttaaaaag cgcgtggttc
    11641 caagcttcat ctgcgtattg tccatcacca gcgcgtcttt ggggatagcg gcaatgataa
    11701 caggcgcttc cggcagcggc gccgctttgg gggcggacgt cacctcagcg cgatgcagcg
    11761 gcaaatgcgc ggtgagttca ggcattgggg taacatcagt tttcgcggta gcgacaggcg
    11821 cggtgcgaac aggagaggcc ccgtcaacgg atgaagatgg ccagaaaaaa ggcgtggcga
    11881 cggcggcgat aaccacggca gcgacaggta agctccacag cggtagacgg cgagctcttt
    11941 tcgcctcagc aaccgggata ggtgcggcag gcttcggctc gctaacgata acgggcggcg
    12001 cagcaggttc ctccggcatt ttcggcggct caatgacaga cgttaacaaa ggttcatccg
    12061 cctgactaaa cgccgcctct accagcggct tttcttcggg ctgcggctcc ggctcgacca
    12121 gagggatgtc ggagatcgcc tcggttaccc gcaggcagtc cagcacatca tcgcgtgtat
    12181 tttcgttgag attaacgaat ccccagaagg tgataaccgg tttgccgtta accaggaaaa
    12241 catgattttc gccgggaaat tgcgtcgcct tctcaagtag cgaaccaaat agctggagcg
    12301 ctgttttacc ggattgcaga cttttgcgac tgagtgcagc cgcgctttca aaagtgctgg
    12361 ctaaataacg taaagcccga gaacgtgtct cttcgtcagc cgctttccac gctatcgcct
    12421 gaccttcaat cggcgaatac cagtcaaccc gatcgccatt atcgttaagt tgcggaatcg
    12481 ccagacagtc aaccatcgtc tgctgtttac gcagacgaag cgtttcgcga atttgcaatg
    12541 ctgattcaaa tacggcctga ccgccgccgc ccacggcctg ataatcatcc agattgccgc
    12601 tgcgcaagag agattttgcc acgttgttat cccttagact tcttcacgcg tctactttac
    12661 ggggtctata cgcaagcaaa cggcggaaga aaggcaaaaa ggcgcgaatt ctcggtctat
    12721 taagccccgt gttttcactt gacgtaagtt aaatcagagt ggcggcggcg aatgaccgca
    12781 tcgggcgaca ataacgcgta taataggcga atcatgctat tacagaataa agagtaggag
    12841 agcttatgtc gcacctggag gaagtgagcg cccgcgtgga tgccgccatc gcggagagcg
    12901 taattgccca tatgaatgaa ttgctgattg ccttgagcga tgacgctgaa ttacgtcacg
    12961 aagatcgtta tgtgcagcag cagcgtttac gcacggctat cgcgcatcac ggcaggcaat
    13021 atcaagaaga tcgggacgcg cgccgcgaac agctcaccaa aggcggcacg atcctgtaac
    13081 ccattaaaac tggcgcttcg caatcagcca tgcgccaatg accagcaaca gcgcgccaaa
    13141 cgccggcccg accattgcgc gtaacgtgac gccgtggcta cgcgcaatat ccagcgccag
    13201 tccgccgatt aactgactgg cgaccagtac cgcgatagtc gtcgcggcgc caacgttctg
    13261 atacccgcta atgctggcaa atacaaaaaa tgaccccagc aaaccgggga tcaatgtcca
    13321 ccagcgcacg ctggcgacca gctcgccgaa gcccgtagcg ccttgcttaa accacaatat
    13381 cgtcacaaat aaaacgatcc ctaccagcga gttcaacagc atagcgatca gaatcgtcga
    13441 tgatgtctgc gtaatacgca ccataatact gttttgtacc accagcccga cgccggcggc
    13501 gatcaaaaag ataagcgtca gcgactggtt catcagcagg cgtccggcgc ggcgtgttca
    13561 tcaagctgga gctgcataaa cgtaagatct aaccaacggc caaattttac gccgacctgc
    13621 ggcatttgcg cggtgacggt aaatcccagc gaatgatgca ggcgtatcga ggcggcattc
    13681 tgtgactcaa taccggccac catcacatgc ttgccgcagc gtcgggcttc gtcgatcagt
    13741 ctgctgagca gttttcgccc cagtcctttc ccctggtgcg ccggatgaac ataaaccgag
    13801 tgctcgacgg tatagcgaaa accgtcgaaa ctgcgccaat cgccaaatga tgcatagcca
    13861 gtcaccacgc cattttcttc gcttaccagc accggatagc ccagtaattg acgggcctca
    13921 taccaggcaa ggcgattatc cgtatcgacc gtccgatcgt tccagatggc cgcagtatgt
    13981 aataccgcac ggttatagat ttcggtaatc gcggcgcagt ctgctttatc ggcaaagcga
    14041 atcgtcatag ggaaccccag ggaatgttta cgatagtgtt agaaatacta ttgaaggcgg
    14101 cataaatcaa cgaattagcg caagaattca tatttagcga gaggggaaag aaagtcgttc
    14161 ataaaagcgc acagcctgat atctgagagt gtttaactcc ctcagaaagc taatgttcga
    14221 ctattattga tggattatgc caggcatgag gagaatagaa tgaagcaaca gaccaaccga
    14281 aatcgtcgtt gggttttggc ctcgcgtccc cacggcgcgc cgcagatgga taacttccgc
    14341 ctcgaagaag atgacgtcgc gacgcccggt gaagggcagg tgctattgcg taccgttttt
    14401 ttatcactcg acccttatat gcgtggccgc atgagcgatg aaccctctta tgcgccgcca
    14461 gttgaacctg gctgcgttat ggttggcggt acggtcagtc gcgttgtcgc gtcgaatcat
    14521 cctgattacc gaccagacga atgggtgttg agttacaatg gttggcagga ttatgacatt
    14581 tcagatggcg aagggttggt aaagctgggt gataatccgc aacatccttc ctggtcgttg
    14641 ggagttttag ggatgccggg gtttaccgcc tatatggggt tactggatat cggccagccg
    14701 aaagagggcg aaacgctggt tgtcgccgcc gccaccggcc ccgtaggcgc aacggttggg
    14761 caaattggca agctgaaggg ctgccgggtc gtgggtattg ccggcggcgc ggaaaaatgc
    14821 cgtcatgcga cagacgtttt gggatttgat ctgtgccttg atcatcacgc tgataatttc
    14881 ccacaacagc ttgcgcaggc ctgcccgcag ggtatcgata tctattatga gaatgtcggt
    14941 ggtaaagtct ttgacgccgt cttaccgcta ctgaatacgt cggcgcggat tccgctctgc
    15001 ggtctggtca gcggctacaa tgcgacaacg ttgccggacg gtccagacag actgccactg
    15061 ctgatggcga cattacttaa aaagcgtatt cgcctgcaag gttttatcat caaccaggac
    15121 tatggtcacc ggatacatga gtttcagcaa gaaatggggc gttggatcaa agaagggaaa
    15181 atacattacc gggagcagat tactgatggg ctggaaaatg cgccagaagc gtttataggg
    15241 ctgctggcgg ggaagaactt tggcaaagtc gtgatacgtt tagcggacga tgcgtaaaga
    15301 aaaaatggcg gcattatgtc gccataaaaa tgtgcaaatt ttaaaattgc ggctttactt
    15361 atattcatca ttcagatcgc ggtggggcag cttatctccc tcagcggcct gaaccggtca
    15421 aaaatctcga tacatgaagg aatgacggag ataaaacggt tgccataaag aaacctgtat
    15481 tgttgtaaaa gatgagaata tcacgcaagt aaattatcac ttttatttat ttggccgttc
    15541 aggtctggat tatctttttt acaattaagt tccgaaactt cttcgggact cgattgcgat
    15601 gttgttctgc caagaggtga aggaaggaaa atgccgggta cggaaaaaac acaacatata
    15661 agcctgacca cacaggttga aaatcggtta aagcatcaat tgtctattgg cgcattaaaa
    15721 ccaggcgcaa ggcttatcac taaaaatatc gctcaagagt taggcgtcag tattacgccg
    15781 gtgcgtgagg ccctgttaag gctggtctct tccagtgctt tggcggtggc gccagcacag
    15841 gcgtttatgg tgccggagat ctcgctggaa agtttgctgg aaattaatac gattcgtact
    15901 gccctggagg agatggcggt ggtcgccgct gcgggtaaga ttaccccgga tcgcgagcag
    15961 acgctgaatg cgctattaga tgaatttcaa caggcgctgg aaagtggcgt tatggagaaa
    16021 attcttttgg ccaaccgcgc attccgcttt
//
LOCUS       DAJVSD010000087        15992 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.087, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000087 DAJVSD010000000
VERSION     DAJVSD010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 15992)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15992)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15992
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.087"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            761..2689
                     /gene="thrS"
                     /locus_tag="OQP62_002245"
     CDS             761..2689
                     /gene="thrS"
                     /locus_tag="OQP62_002245"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006894721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HCS1721786.1"
                     /translation="MPVITLPDGSQRHYDHPVSPMDVALDIGPGLAKATIAGRVNGEL
                     VDASDLIENDATLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVVDNGF
                     YYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFVKRGESYKVSIL
                     DENIAHDDKPGLYHHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRI
                     YGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRE
                     LEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNC
                     PGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQ
                     IRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNI
                     PFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPV
                     MIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNITDSQSEYVNELTQKLQNAG
                     IRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNDV
                     IEKLQQEIRSRSLQQLEE"
     gene            2693..3235
                     /gene="infC"
                     /locus_tag="OQP62_002246"
     CDS             2693..3235
                     /gene="infC"
                     /locus_tag="OQP62_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HCS1721787.1"
                     /translation="MKGGKRVQTARPNRINSEIRAQEVRLTGLEGEQLGIVSLREALE
                     KAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQKKKQKVIQVKEIKFRPGT
                     DEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKNDLQELAVVES
                     FPTKIEGRQMIMVLAPKKKQ"
     gene            3331..3528
                     /gene="rpmI"
                     /locus_tag="OQP62_002247"
     CDS             3331..3528
                     /gene="rpmI"
                     /locus_tag="OQP62_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HCS1721788.1"
                     /translation="MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHL
                     RPKAMVSKGDLGLVIACLPYA"
     gene            3579..3935
                     /gene="rplT"
                     /locus_tag="OQP62_002248"
     CDS             3579..3935
                     /gene="rplT"
                     /locus_tag="OQP62_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HCS1721789.1"
                     /translation="MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQ
                     YAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFD
                     KVAFTALVEKAKAALA"
     misc_feature    4051..4174
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01859"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Phe leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF01859"
     gene            4056..4100
                     /gene="pheM"
                     /locus_tag="OQP62_002249"
     CDS             4056..4100
                     /gene="pheM"
                     /locus_tag="OQP62_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pheST operon leader peptide PheM"
                     /protein_id="HCS1721790.1"
                     /translation="MNAAIFRFFFYFST"
     gene            4237..5220
                     /gene="pheS"
                     /locus_tag="OQP62_002250"
     CDS             4237..5220
                     /gene="pheS"
                     /locus_tag="OQP62_002250"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004851795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HCS1721791.1"
                     /translation="MSHLAELVANAAAAINQASDVAALDNVRVEYLGKKGHLTLQMTT
                     LRDLPPEERPAAGAVINAAKEQVQQALNARKAELESAALNARLAAETIDISLPGRRIE
                     NGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF
                     DATRLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNI
                     SFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVH
                     PNVLRNVGIDPEIYSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQFK"
     gene            5236..7623
                     /gene="pheT"
                     /locus_tag="OQP62_002251"
     CDS             5236..7623
                     /gene="pheT"
                     /locus_tag="OQP62_002251"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HCS1721792.1"
                     /translation="MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFNG
                     VVVGEVVECAQHPNADKLRVTKVNVGGERLLDIVCGAPNCRQGLKVAVATIGAILPGD
                     FKIKAAKLRGEPSEGMLCSFSELGISDDHSGIIELPADAPLGTDIREYLKLDDNTIEI
                     SVTPNRADCLGIIGVARDVAVLNKAPLQEPEMAPVTATISDTLLITVEAVDACPRYLG
                     RVVKGINVNAPTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIDGGI
                     VVRMAKEGETVVLLDGSEATLNADTLVIADHHKALGIAGIFGGEHSGVNGETQNVLLE
                     CAYFNPLSITGRARRHGLHTDASHRYERGVDPALQYKTIERATRLLLDICGGDAGPII
                     DVSNEATLPKRATITLRRSKLDRLIGHHIADEQVSDILRRLGCEVTEGQDEWKAVAPT
                     WRFDMEIEEDLVEEVARVYGYNNIPDEPIQAGLIMGTHREADLSLKRVKTMLNDKGYQ
                     EVITYSFVDPKVQQLIHPGAEALLLPNPISVEMSAMRLSLWSGLLATVVYNQNRQQNR
                     VRIFETGLRFVPDTQANLGIRQDLMLAGVICGNRYDEHWNLAKETVDFYDLKGDLEAV
                     LDLTGKLGDIQFKAEMNPALHPGQSAAIYLKDERIGFIGVVHPELERKLDLNGRTLVF
                     ELEWNKLADRIVPQAREISRFPANRRDIAVVVAENVPAADILSECKKVGVNQVVGVNL
                     FDVYRGKGVAEGYKSLAISLILQDTNRTLEEEEIAATVAKCVEALKERFQASLRD"
     gene            7628..7927
                     /gene="ihfA"
                     /locus_tag="OQP62_002252"
     CDS             7628..7927
                     /gene="ihfA"
                     /locus_tag="OQP62_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HCS1721793.1"
                     /translation="MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQV
                     KLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKEE"
     gene            8130..9110
                     /gene="btuC"
                     /locus_tag="OQP62_002253"
     CDS             8130..9110
                     /gene="btuC"
                     /locus_tag="OQP62_002253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter permease BtuC"
                     /protein_id="HCS1721794.1"
                     /translation="MLTFARQQQRRNVRWLLSLSLLVLLATLLSLCAGEQWIAPGDWL
                     SARGELFVWQIRLPRTLAVLLVGAALALSGAVMQALFENPLAEPGLLGVSNGAGVGLI
                     AAVLLGQGQLPGWALGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALM
                     TWAIYFSTSFDLRQLMYWMMGGFGGVDWQQSWLMIALIPVLIWICCQSQPLNMLALGE
                     TSARQLGLPLWLWRNLLVIATGWMVGVSVAMAGAIGFIGLVIPHILRLCGLTDHRVLL
                     PGCALAGAIALLLADVVARLALASAELPIGVVTATLGAPVFIWLLLKSAR"
     gene            9202..9753
                     /locus_tag="OQP62_002254"
     CDS             9202..9753
                     /locus_tag="OQP62_002254"
                     /EC_number="1.11.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HCS1721795.1"
                     /translation="MQNSLLNTHVTTIDGEVTTLEKYAGKVLLIVNVASRCGLTPQYE
                     QLENIQKAWADQGFVVLGFPCNQFMGQEPGSEEEIKTYCASTWGVTFPMFSKIDVNGD
                     ARHPLYQKLIAAAPTAVAPEKSGFYERMVSKGRTPLYPDDILWNFEKFLVGRDGQVVQ
                     RFSPDMTPEDPIVMESIKIALAK"
     gene            9753..10502
                     /gene="btuD"
                     /locus_tag="OQP62_002255"
     CDS             9753..10502
                     /gene="btuD"
                     /locus_tag="OQP62_002255"
                     /EC_number="7.6.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter ATP-binding protein
                     BtuD"
                     /protein_id="HCS1721796.1"
                     /translation="MSQLMQLKDVAESTRLGPLSGEVSAGEILHLVGPNGAGKSTLLA
                     RMAGLTSGEGSIRFGGAPLEAWATATLAQHRAYLAQQQNPPFAMPVWHYLTLHQPDKT
                     RTGQLNEVADMLGLGDKLGRSVNQLSGGEWQRVRLAAVVLQIHPDANPVGQLLLLDEP
                     MNSLDVAQQNALDRVLHHLCQAGIAIVMSSHDLNHTLRHAHKAWLLKRGKLIACGRRE
                     EVLTPSYLAQAYGLRFRRLDVEGHPMLISAP"
     gene            10579..11043
                     /locus_tag="OQP62_002256"
     CDS             10579..11043
                     /locus_tag="OQP62_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1721797.1"
                     /translation="MRFWLLVITALFLAGCSTHRAPAPNARLSDSITVIAGLNDQLQS
                     WRGTPYRYGSMSRRGVDCSGFVVVTMRDKFDLQLPRDTREQSKIGTRIDKDELLPGDL
                     VFFKTGSGESGLHVGIYDTNNEFIHASTSRGVMRSSLDNVYWRKNFWQARRI"
     gene            11357..12070
                     /gene="ydiV"
                     /locus_tag="OQP62_002257"
     CDS             11357..12070
                     /gene="ydiV"
                     /locus_tag="OQP62_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-FlhDC factor YdiV"
                     /protein_id="HCS1721798.1"
                     /translation="MIASLDELYHSELFFLPVMDENARLVGLEIIATFAAEDGAVRMP
                     TELVAPRLSVEEQYCLFVEKLALLETCQHFFIQHKLIAWLNLPPAISDLLLLDSELFS
                     RAARFPFFEVAINENYPGLNQGKNNETLANLAMHFPLILANFGAGEASTKAIFYGLFK
                     RVMLDKNFIQQRAEMISFEPFMHAIVAQISSSCESLMIAGIDTEAMFARAAPLGFSAF
                     QGGLWPPVPVSQLIKLVQR"
     gene            12132..13574
                     /locus_tag="OQP62_002258"
     CDS             12132..13574
                     /locus_tag="OQP62_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiU family protein"
                     /protein_id="HCS1721799.1"
                     /translation="MTLSFTARWRDELPATYTALLPTPLKNARLIWYNDELAQQLAIP
                     ASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGIWAGQLGDGRGILLGEQLLADGS
                     TLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVASDTPVQ
                     RETQETGAMLMRLAQSHMRFGHFEHFYYRREPEKVQQLADFAIRHYWPQWQDVAEKYA
                     LWFEEVAARTGRLIAEWQTVGFSHGVMNTDNMSILGLTIDYGPFGFLDDYDPGFIGNH
                     SDHQGRYRFDNQPSVALWNLQRLAQTLTPFIEIDALNRALDRYQDALLTHYGQRMRQK
                     LGFFTEQKDDNALLNELFSLMAREGSDYTRTFRMLSHTEQQSASSPLRDTFIDRAAFD
                     AWFDRYRARLRTEAVDDALRQQQMQRVNPAIVLRNWLAQRAIDAAEQGDMAELHRLHE
                     VLRQPFTDRDDDYASRPPEWGKRLEVSCSS"
     gene            complement(13610..13801)
                     /gene="hemP"
                     /locus_tag="OQP62_002259"
     CDS             complement(13610..13801)
                     /gene="hemP"
                     /locus_tag="OQP62_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemin uptake protein HemP"
                     /protein_id="HCS1721800.1"
                     /translation="MSRMDNTELPHPKEIDNETLLPAAERRVNSQALLGPDGKVIIDH
                     NGQEYLLRKTQAGKLLLTK"
     gene            complement(13958..15004)
                     /gene="aroH"
                     /locus_tag="OQP62_002260"
     CDS             complement(13958..15004)
                     /gene="aroH"
                     /locus_tag="OQP62_002260"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroH"
                     /protein_id="HCS1721801.1"
                     /translation="MNRTDELRTARIDSLVTPTELAQRYPVSSSVASHVTDSRRRIEK
                     ILNGEDPRLLVVIGPCSIHDLNAAMEYATQLQAQRQKHQARLEIVMRTYFEKPRTVVG
                     WKGLISDPDLNGSYRVNHGLELARRLLLQVNELGVPTATEFLDMVTGQFIADLISWGT
                     IGARTTESQIHREMASALSCPVGFKNGTDGNTRIAVDAIRASRASHMFLSPDKDGQMT
                     IYQTSGNPYGHIIMRGGKKPNYHAEDIAAACDTLHEFDLPEHLVVDFSHGNCQKQHRR
                     QLDVCDDICQQIRNGSTAIAGIMAESFLREGTQKIISGQPLIYGQSITDPCLNWEDTE
                     VLLEKLAAAVDSRF"
     gene            complement(15160..>15992)
                     /gene="ppsR"
                     /locus_tag="OQP62_002261"
     CDS             complement(15160..>15992)
                     /gene="ppsR"
                     /locus_tag="OQP62_002261"
                     /EC_number="2.7.11.33"
                     /EC_number="2.7.4.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="posphoenolpyruvate synthetase regulatory
                     kinase/phosphorylase PpsR"
                     /protein_id="HCS1721802.1"
                     /translation="DNVVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVEN
                     ESRARAVKDQIDAIYQQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQE
                     MKLDPTPIAHRTHGLNPGNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSRC
                     GKTPTSLYLAMQFGIRAANYPFIADDMDNLTLPTSLKPLQHKLFGLTIDPERLAAIRE
                     ERRENSRYASLRQCRMEVAEVEALYRKNQIPCLNSTNYSVEEIATKILDIMGLNRRMY
                     "
BASE COUNT         3917 a         3794 c         4342 g         3939 t
ORIGIN      
        1 gatatcaaaa ccgtgttatt gaaatattaa cactcattaa cactcctatc tactgcgcct
       61 ccgatagcat gaagctatca agcgtttgca gcacaaacat caaacaatgt aaatgctttt
      121 gataattacg catgattgtt actgtgttta tatacagtgg cattcgaaga ttcatcatga
      181 ggttcccgag tcctgtaaaa gactatacag agaaagagct atcactcgac gagtaattca
      241 tctcacatcg tgccgcgaca tacttcaagc aacacagacg aattacaagt acggcatcat
      301 aagtgagacg ttgctagtta tagaagcttc atagcagcat gtaatggctc tttgctggta
      361 tgtgctttgg aaagtgggtt tcgtattgtg cgttatcgca tgctgccagg tccccatctg
      421 gagaatatag atagcggtcg tcgtgaaaag ctatctgatg tgaatgcctc atacggtggc
      481 agtaagccga gattcagagt gaccatgtac atcattaacg atacgcgtgc cgggtagtgt
      541 gttgggattc aggttctgta gaacagaaag atgcaatctc ccttttttta gtgttaccat
      601 catcatgccg gacgaaaata gcgattttcg tctgtgtcga aggttgtgcg ccaatttagc
      661 aatggttggc tagatggata cacaactcac tgtcaataaa ttcattttct ctttgtatgt
      721 gatcttgcgt atgggtcacc actgcaaata aggatattac atgcctgtta ttactcttcc
      781 tgatggcagc caacgccatt atgaccaccc tgtaagcccg atggatgttg ctctggacat
      841 tggtcctggc ctggcgaaag ccaccattgc gggccgtgtg aatggcgagc tggttgatgc
      901 ttccgatctg attgaaaatg atgcgacgct ttccatcatc accgcaaaag atgaagaggg
      961 tctggagatc attcgtcact cttgcgcgca tctgttaggt cacgctatca agcaactttg
     1021 gccgcacacg aaaatggcga tcggtccggt tgtcgacaac ggtttttact atgacgttga
     1081 tcttgaccgc acgctaactc aggaagatgt cgaagcgctc gaaaagcgga tgcatgagct
     1141 cgccgagaaa aattacgacg ttatcaagaa gaaagtcagc tggcacgaag cgcgtgaaac
     1201 cttcgtgaag cgtggtgaaa gctacaaagt ttccattctt gatgaaaaca ttgctcatga
     1261 tgacaagcca ggcttgtacc atcatgaaga atatgtcgac atgtgtcgtg gtccgcacgt
     1321 gccgaatatg cgtttctgcc atcactttaa actgatgaaa actgccggcg catactggcg
     1381 cggtgacagc aataataaga tgttgcagcg tatttacggt acggcatggg cagataaaaa
     1441 agccctgaac gcttatctgc agcgcctgga agaggccgca aaacgcgacc accgtaaaat
     1501 tggtaagcag ctcgacctgt atcatatgca ggaagaagcg ccgggcatgg tgttctggca
     1561 taacgacggc tggactatct tccgcgagct ggaggtcttt gttcgttcta aactcaaaga
     1621 gtaccagtat caagaagtta aaggcccgtt catgatggac cgtgtgctgt gggaaaaaac
     1681 cgggcactgg gacaactata aagatgcgat gttcaccaca tcttcagaaa accgcgaata
     1741 ttgcatcaag ccgatgaact gcccgggcca cgttcagatc tttaaccagg gtctgaaatc
     1801 ctatcgtgat ttgccgctgc gtatggcgga attcggtagc tgccaccgta acgagccatc
     1861 aggcgcgctg catggtctga tgcgcgtacg cggctttacg caggatgatg cgcatatctt
     1921 ctgcaccgaa gagcagatcc gcgatgaagt taacgcttgt attcgtatgg tctacgatat
     1981 gtacagcacc tttggcttcg agaagatcgt cgtcaaactt tccactcgtc ctgataagcg
     2041 tatcggcagc gatgagatgt gggatcgtgc tgaggcggat ctggcggttg cgctggaaga
     2101 aaataatatc ccgtttgagt atcaactggg tgaaggcgca ttctacggtc cgaaaattga
     2161 atttacctta tatgactgcc tcgatcgtgc atggcagtgc ggtacagtac agctggactt
     2221 ctccttaccg tctcgtctga gcgcctccta tgtaggcgaa gacaacgagc gcaaggtgcc
     2281 ggtaatgatt caccgtgcga ttcttgggtc gatggaacgc ttcatcggta tcctgaccga
     2341 agagttcgct ggtttcttcc cgacatggct cgcgcctgtt caggtagtcg tgatgaatat
     2401 taccgattcg cagtctgaat acgttaacga attgacgcag aaactacaaa atgcgggcat
     2461 tcgtgtaaaa gcagacttga gaaatgagaa gattggcttt aaaatccgcg agcacacttt
     2521 acgtcgtgtc ccttatatgt tggtctgtgg tgataaagag gtggaagcag gcaaagttgc
     2581 cgttcgcacc cgccgcggta aagacctggg cagtctggac gtaaatgacg tgattgagaa
     2641 gctgcaacaa gagattcgca gccgcagtct tcaacaactg gaggaataaa gtattaaagg
     2701 cggaaaacga gttcaaacgg cgcgtccgaa tcgtattaat agcgaaattc gcgcgcaaga
     2761 agttcgctta acaggtctgg aaggcgagca gcttggtatt gtgagtctga gagaagctct
     2821 ggaaaaagct gaagaagccg gagtagactt agtcgaaatc agccctaacg ccgagccgcc
     2881 ggtttgtcgt ataatggatt acggcaaatt cctctatgaa aagagtaagt cttctaagga
     2941 acagaagaaa aagcaaaaag ttatccaggt gaaggaaatt aaattccgtc ctgggacaga
     3001 tgaaggcgac tatcaggtaa aactccgcag cctgattcgc tttctcgaag agggcgataa
     3061 ggccaagatc acgctgcgtt tccgcggtcg tgaaatggcc caccagcaaa tcggtatgga
     3121 agtgcttaat cgcgtgaaaa acgatttgca agaactggca gtggtcgaat ccttcccaac
     3181 gaagatcgaa ggccgtcaga tgatcatggt gcttgctcct aagaagaaac agtaaggcct
     3241 tcaagtaaca attctgtgaa gccttcgggc ttcacaggtt ttgttcgcct atgtttcgtt
     3301 tattaacaat gcgaagtgga agttattaaa atgccaaaaa ttaagaccgt acgcggtgct
     3361 gctaagcgct tcaaaaaaac cggtaaaggt ggttttaagc acaagcacgc taacctgcgt
     3421 cacattctga ccaaaaaagc gactaaacgt aaacgtcacc tgcgtccgaa agccatggtt
     3481 tctaaaggcg atctgggctt ggttatcgcg tgcctgccgt acgcataagc cgttaacgtt
     3541 tttaactttt taattagaat agatacagga gagcacatat ggctcgcgta aaacgtggtg
     3601 taattgcacg cgcacgtcac aagaaaattt tgaaacaagc caaaggctac tacggtgcgc
     3661 gttctcgcgt ataccgcgtt gccttccagg cagttatcaa agctggtcag tatgcttacc
     3721 gtgaccgtcg tcaacgtaag cgtcagttcc gtcaactgtg gattgcgcgt atcaacgcag
     3781 cagcacgtca gaacggtatt tcttacagca aattcatcaa cggcctgaaa aaagcctctg
     3841 ttgaaatcga ccgtaagatc ctggctgata tcgccgtatt cgacaaagtc gcgttcaccg
     3901 cgctggttga aaaagcgaaa gcagctctgg cataagccag tgaaaagagg gagcctggct
     3961 ccctctcttt tatttactgt tcagtgagtt gacaattgac ctgtaaccct tttcaataaa
     4021 ggatattcgg ttttaccaca taaggtaacg caagcatgaa cgctgctatt ttccgtttct
     4081 ttttttactt tagcacctga tcccaggagg ctagcgcgtg aaaaacgaaa cgaaaaacag
     4141 cgtaaaaaag cctcctgatg gaggcttttt ttgtatctga aatcgagaga ttacgtccaa
     4201 tgaaccggtg tcttcaccga cacaatgagg aaaaccatgt cacatctcgc agagctggtt
     4261 gccaatgcag cggccgccat taaccaggcg tcagatgttg ccgcgttaga caatgtacgc
     4321 gtcgaatatt tgggcaagaa agggcattta acccttcaga tgacgaccct acgcgatctg
     4381 ccgccggaag agcgtccggc agccggggca gtcattaacg ccgcgaaaga gcaggtacaa
     4441 caggcgctta acgcgcgtaa agccgagctg gaaagcgcag cgcttaacgc tcgtctggcc
     4501 gctgaaacta tcgatatctc cctgccggga cgccgtattg agaacggcgg tctgcatccg
     4561 gtcacgcgta ccattgaccg tattgaaagt ttcttcggcg agcttggttt taccgtggcg
     4621 actggcccgg aaatcgaaga tgactaccat aacttcgatg cgttaaacat tccgggtcat
     4681 cacccggccc gcgccgatca tgataccttc tggtttgacg cgacccgtct gctgcggacc
     4741 cagacgtctg gtgtccagat ccggacgatg aaagcgcagc aaccgccgat ccgtattatt
     4801 gcgccgggcc gtgtataccg taatgactac gaccagacgc atactccgat gttccatcag
     4861 atggaaggtc tgattgttga taccaacatc agcttcacca acctcaaagg tacgctgcac
     4921 gacttcctgc gtaatttctt tgaggaggat ctgcagattc gcttccgtcc ttcttatttt
     4981 ccgttcaccg aaccttctgc ggaagtggat gtgatgggta aaaacggcaa atggctggaa
     5041 gtgctgggct gcgggatggt gcatccgaat gtgctgcgta atgtcggtat cgatccggaa
     5101 atctattctg gcttcgcttt tggtatgggg atggaacgtc tgaccatgtt gcgttacggc
     5161 gtcaccgacc tgcgttcatt cttcgaaaac gatctgcgtt tccttaaaca gtttaaataa
     5221 aggcaggata aaacaatgaa attcagcgaa ctgtggttac gcgagtgggt taacccggca
     5281 attgatagcg atgcgttggc taaccagatt acgatggctg gcctggaagt agacggcgtt
     5341 gagccggtcg cgggaagctt caatggcgtt gtggttgggg aagtggttga gtgcgcccag
     5401 catccgaacg ctgacaaatt gcgtgtaacg aaagtcaacg tcggcggaga acgcctgttg
     5461 gatatcgtct gcggcgcgcc aaactgtcgt caggggctga aagtagcggt ggccactatt
     5521 ggcgctattc tgccgggcga tttcaaaatt aaagcggcga aactgcgcgg cgaaccgtct
     5581 gaagggatgc tgtgctcctt ctccgaactg gggatttccg acgatcacag cggcattatc
     5641 gaactgccgg cggatgcgcc gttgggtacc gacatccgtg aatacctgaa gcttgacgac
     5701 aataccatcg aaattagcgt cacgccgaac cgtgcggatt gcttaggtat catcggcgtt
     5761 gcgcgtgatg tggcggtact gaacaaagcg ccgctccagg agcctgaaat ggcgccggtt
     5821 acggcaacca tcagcgatac gctgctgatt acggtagagg ctgttgatgc gtgtcctcgc
     5881 tatcttggcc gggtggtaaa aggtatcaat gttaacgcgc cgacgccgct gtggatgaaa
     5941 gagaaactgc gtcgctgcgg tattcgctcc atcgatgcgg tggttgacgt cacgaactat
     6001 gtgctgctcg aactgggtca gccaatgcat gctttcgata aagatcgcat tgatggcggt
     6061 attgtcgtgc ggatggcaaa agagggtgaa accgtcgtcc tgctggacgg tagcgaagcg
     6121 acgttaaatg cggacacgct ggtgatcgcc gatcaccata aggcgctggg gatagccggt
     6181 atttttggcg gcgaacattc cggcgtgaac ggcgaaacgc aaaatgtgct gctggagtgt
     6241 gcgtacttta atccgctgtc tatcaccggt cgcgctcgcc gccacggtct gcataccgat
     6301 gcgtctcacc gctacgagcg cggggtggac ccggcgctgc aatataaaac gatagagcgc
     6361 gctactcgtc tgcttcttga tatctgtggc ggtgatgcgg gtccgataat tgatgtgagc
     6421 aacgaagcaa cgttgccgaa acgcgccacc attactctgc gtcgcagtaa actggatcgc
     6481 ctgatcgggc atcatattgc ggatgagcag gtcagtgata ttctgcgtcg tctgggctgt
     6541 gaagtgaccg aagggcagga cgagtggaaa gccgtggcgc cgacctggcg tttcgatatg
     6601 gagattgaag aagatctggt ggaagaggtg gcccgcgttt acggctataa caatattccg
     6661 gacgagccaa tccaggccgg tttaatcatg ggaacgcacc gtgaagccga tctgtcgttg
     6721 aagcgggtta aaaccatgct gaacgacaaa ggctatcagg aagtgattac ctatagcttt
     6781 gtcgatccta aagtacaaca gctcatccat ccaggcgcag aagcgctgct gctgccaaac
     6841 cctatctccg ttgagatgtc ggcgatgcgt ctgtctctgt ggagcggatt gttggcgacg
     6901 gtggtctata accaaaaccg tcagcagaat cgcgtgcgta tttttgaaac cggtttacgt
     6961 ttcgttccgg atacacaagc caatctgggt attcgacagg atctgatgct ggctggcgtg
     7021 atttgcggta accgctatga tgagcactgg aacctggcaa aagagaccgt tgatttctat
     7081 gatttgaaag gcgatctgga agcagtattg gatttaaccg gcaaactggg tgatatccag
     7141 tttaaggcgg agatgaatcc ggctctgcat ccgggacagt ctgcggcgat ttatctgaaa
     7201 gatgaacgta ttggttttat tggggttgtt caccctgaac tggaacgtaa actggatctg
     7261 aatggtcgta cgctggtgtt tgaactggaa tggaataagc tcgcagaccg tatcgtgccg
     7321 caggcgcggg agatttcacg cttcccggcc aaccgtcgcg atattgcggt tgttgttgca
     7381 gaaaacgttc ccgcagcgga tattttatcc gaatgtaaga aagttggcgt aaatcaggta
     7441 gttggcgtaa acttatttga cgtgtaccgc ggtaagggtg ttgcggaggg ttataaaagc
     7501 ctcgctatca gcctgatcct tcaggatacc aaccgtacac tcgaagaaga ggagattgcc
     7561 gctaccgtcg ccaaatgtgt agaggcatta aaagagcgat tccaggcatc attgagggat
     7621 tgaacctatg gcgcttacaa aagctgaaat gtcagaatat ctgtttgata agcttgggct
     7681 tagcaagcgg gatgccaaag aactggttga actgtttttc gaagagatcc gtcgtgctct
     7741 ggaaaacggt gagcaggtga aactctctgg ttttggtaac ttcgatctgc gtgataaaaa
     7801 tcaacgtccg gggcgtaacc cgaaaacggg tgaagatatt cctattacag cacggcgcgt
     7861 ggtgaccttc agacccgggc agaagttaaa gagccgggtc gaaaacgctt cgcccaaaga
     7921 agagtaatca gatccaggca taacatccat cagggtgtat tgcggcagat acgctgccat
     7981 cccgaaagta gatcagcggg atgacagcgt atttgtcagc ctgaaagatg acccgtataa
     8041 ctaaaaaggc cgcattgcgg ccttttttct ttcaagtaaa ggatacccac cgtaaaatca
     8101 cgctacctct tttcagctga atggataaca tgctgacttt tgcccgccaa caacagcgac
     8161 gaaacgttcg ctggcttctg agcctgtcac tgctggtgct actggctaca cttctgagct
     8221 tatgcgcagg cgaacagtgg attgcccccg gtgactggtt aagcgcccgg ggggaactgt
     8281 ttgtctggca aattcgcctt ccccgcacgc ttgcggtatt gctggttggc gctgcgctgg
     8341 cgctatctgg cgccgtgatg caggcgctgt ttgaaaaccc acttgctgaa ccgggtctgc
     8401 tcggcgtttc gaatggggcc ggtgttgggc ttattgccgc cgtcttactg gggcaggggc
     8461 aactgccagg atgggcgctg gggctgtgcg ctatagccgg cgcgctcatt attacgttaa
     8521 tcctgctgcg ttttgcgcgt cgccatctct ctaccagccg cttgttgttg gcgggcgtcg
     8581 cgctgggcat tatctgtagc gcgctgatga cgtgggctat ctatttttcc acctctttcg
     8641 atctgcggca attaatgtac tggatgatgg gaggatttgg cggcgttgac tggcagcaga
     8701 gctggctaat gattgcgctc atcccggtac tgatctggat atgttgccag tcgcaaccgc
     8761 tgaatatgct ggcgctaggg gaaacctcgg cgcggcagct tggcctgccg ctgtggctct
     8821 ggcgcaattt gttggtcatc gccaccggct ggatggtggg cgtcagcgtg gcgatggcgg
     8881 gggcgattgg ttttatcggt ctggttattc cgcacatcct gcgcttatgt ggtttaaccg
     8941 atcaccgggt tttacttccc ggctgcgcgc tggccggggc tatcgccctg ctattggctg
     9001 atgtggtcgc ccgactggcg ctggcgtcgg ctgaactgcc tatcggggtg gtcaccgcca
     9061 cattgggggc accagtgttt atctggctgc tactcaaatc cgcgcgttag cgcatcggta
     9121 aacaactgct ttcatcattc gcagtctatg attaaaggct aacgatgaaa cccgctattc
     9181 taccgacatc agggagacac catgcaaaac tcgcttctta atactcacgt tacgacgatt
     9241 gatggagagg tcactacact tgaaaaatac gccggaaaag tgctgctcat tgtaaacgtc
     9301 gcctccagat gtggcctgac gccgcaatat gaacagttgg aaaatatcca gaaggcgtgg
     9361 gcagatcagg ggtttgtcgt gttgggtttt ccctgcaacc agtttatggg gcaggagcca
     9421 ggcagcgaag aggagattaa aacctattgt gccagcacct ggggcgtcac gttcccgatg
     9481 ttcagtaaaa ttgatgtgaa tggcgacgcg cgccatccgc tgtatcaaaa actgatagcc
     9541 gctgcgccaa cggcagtcgc gccggagaag agcggctttt acgaacggat ggtaagcaaa
     9601 gggcgtacgc cactctatcc ggatgatatt ctgtggaatt ttgaaaaatt tttggtaggc
     9661 cgggatggtc aggtggtaca gcgtttttcg ccggatatga cgcctgaaga tcctattgtg
     9721 atggaaagca taaaaatcgc gttggcaaaa taatgtctca attgatgcaa ttaaaggacg
     9781 tcgccgagag cacccgcctg gggccgcttt ccggcgaagt aagcgcagga gagatccttc
     9841 atcttgtcgg gccgaacggc gccgggaaaa gcacgctact ggcgcgtatg gcggggttaa
     9901 cctccggcga ggggagcatc aggtttggcg gagcgccgct ggaggcatgg gcgacggcaa
     9961 cgcttgccca acaccgcgct tatcttgcgc aacagcaaaa tccgccgttc gccatgccgg
    10021 tctggcatta cctgacattg catcaacctg ataaaacgcg aaccgggcag cttaacgagg
    10081 tggccgatat gcttggattg ggcgacaaac tggggcgaag cgtgaatcag ctttccggtg
    10141 gcgagtggca gcgcgttcgc cttgctgccg ttgtactaca aattcatccc gacgctaatc
    10201 cggtcggtca attattgctg cttgatgagc cgatgaacag tctcgatgtt gcgcaacaaa
    10261 acgctctgga tcgggtatta catcatttat gtcaggcagg aattgcgatt gtgatgagta
    10321 gccacgatct gaaccacacg ctgcgccatg cgcataaagc ctggttacta aagcgcggta
    10381 aactcattgc ctgcggccgc cgggaagagg tgctcacccc ctcttatctg gcgcaagcct
    10441 acggtttgcg ctttcgacga ctcgacgtcg aggggcatcc aatgctcatt tcggcccctt
    10501 aagtaaaatc gtttcttgaa aagcaggtaa tttcgacgct aaattaatac caaaataaaa
    10561 acagaggatt gttgcggcat gcgtttttgg cttcttgtta tcacagcatt gttcctggca
    10621 ggatgcagta ctcatcgggc accggcgcca aatgccagat tatcagactc cattaccgtc
    10681 attgcgggtc tgaacgatca gttgcagtcc tggcgcggta cgccataccg ctacggcagc
    10741 atgagtcgca gaggcgtgga ctgttccggc tttgtggtag tcactatgcg cgacaagttt
    10801 gatttgcagt tgcctcgtga tacgcgtgaa caatcaaaaa tcggcaccag aatcgataaa
    10861 gatgaattgc tgcccggaga tttggttttc tttaaaaccg gttcgggcga aagtggttta
    10921 catgttggta tttacgatac aaataatgag tttattcatg cctctaccag tcgtggcgtg
    10981 atgcgttcat cgctggataa tgtgtactgg cgaaaaaact tctggcaggc acggcgaatt
    11041 taacctcgca gacgatataa attttatagt ctatttttaa catatcgcca gttgaactta
    11101 tgacatctgt tgtcatcata tataatgata taaccgtagc atttacaaac gtacttttat
    11161 taaaaacggg cgtgctcacg ccctgttaaa agtacaacat tggatattgg tttataatca
    11221 gagtaagtta aaaaaaggaa ccggttcacc ggtaaacaag aaaaatgatg acgcttcaat
    11281 tagtatctga agttacgtct gtttccgtcc gtagtgactg gatggtgaat agcgccctaa
    11341 ccatgggact ggcgtaatga ttgcttcact tgatgagctt taccattccg aactcttttt
    11401 ccttcccgtc atggatgaaa acgctcggct tgttggttta gagattattg caacgtttgc
    11461 cgctgaagac ggcgccgtgc ggatgccgac tgagttggta gcgcctcgcc tttcggtgga
    11521 ggaacaatac tgtctgtttg ttgaaaaact ggcgttgtta gaaacctgtc agcacttttt
    11581 tattcagcat aaacttattg catggcttaa tttaccgcct gcaattagtg acttattatt
    11641 attagatagc gaactttttt cccgggcagc gcgctttccg ttttttgaag tagctataaa
    11701 tgagaattat cctgggttaa accagggcaa aaacaatgaa acgttagcta atctggcaat
    11761 gcatttccca ttaattttgg caaattttgg ggcaggcgag gcgtcgacta aagctatttt
    11821 ctatgggctt ttcaaacgag tcatgttgga taaaaatttt attcagcagc gagctgaaat
    11881 gatctcattc gaaccattca tgcacgctat tgttgcccag atctcctcca gctgcgagtc
    11941 gctgatgatt gccggtattg atactgaggc gatgtttgcg cgcgcagcgc cattggggtt
    12001 tagcgcattc cagggcggac tatggcctcc ggtgccggta agccagctca ttaaactcgt
    12061 tcagcgataa cctttctgtt tgccggtgtt taaccggtga ttaaccgtct acactgaaga
    12121 caggaggccc tatgaccctg tcttttactg cccgttggcg cgatgaattg ccagcaacgt
    12181 ataccgcgct tttacccaca ccgttaaaaa atgcgcgact gatttggtat aacgacgaac
    12241 tggcgcagca gttagccatt cccgcttcgt tatttgacgc taccaatggc gctggcgttt
    12301 ggggcggcga aaccttatta cccggtatgt cgcctgtcgc gcaggtatat agcgggcatc
    12361 agttcggcat ctgggcggga caactcggcg acggacgcgg tattttgctg ggcgaacagc
    12421 tcctggcgga tggctcgacc ctcgactggc atctgaaagg cgccggatta acaccctatt
    12481 cgcgaatggg agatggacgc gccgtcctgc gttcaaccat acgagaaagt cttgccagcg
    12541 aagctatgca ttatctgggt attcccacta cgcgcgcgtt atctatcgta gccagcgata
    12601 cgccggttca gcgagagacg caggaaacgg gcgcgatgtt aatgcgtctg gcacaaagtc
    12661 atatgcgttt tggtcatttc gaacatttct attaccgccg tgagccggaa aaagttcagc
    12721 aactggctga tttcgctatt cgtcattact ggccgcaatg gcaggatgta gcggaaaaat
    12781 atgctttgtg gtttgaagag gtggcggcgc gtaccggaag actcatcgcc gagtggcaaa
    12841 ccgtcggttt ttcgcacggc gttatgaata cggataacat gtcgattctg gggctgacca
    12901 tcgactatgg cccctttggt tttctcgacg actacgatcc cggcttcatt ggtaaccatt
    12961 ccgatcatca gggacgttac cgcttcgata atcaaccgtc ggtggcgctg tggaatttac
    13021 aacgtctggc gcagacgtta acccctttta ttgagatcga cgcgttaaac agagcgctgg
    13081 atcgttacca ggacgcgttg ttaacgcact atgggcagcg aatgcgccag aagctgggct
    13141 tctttaccga gcaaaaagac gataacgctt tactgaatga attgtttagt ctgatggcgc
    13201 gcgaagggag tgattatacc cgtacatttc ggatgttaag ccatacggag caacagagcg
    13261 cctcctcgcc gttgcgggat acgtttatcg atcgcgcggc gttcgatgcc tggttcgacc
    13321 gctaccgggc gcgattgcgc acagaggcgg tggatgacgc gctgcgccaa cagcagatgc
    13381 aacgcgtgaa tcctgcgatt gtgttgcgca actggctggc gcaacgcgcg atagatgcgg
    13441 ctgaacaagg agacatggcg gaactgcatc ggttgcatga agttttacgt caacctttta
    13501 ccgatcgaga tgatgactat gccagccgac cgccggagtg gggaaagcgg ctggaggtca
    13561 gttgttcaag ttagccagat gccagcagaa tcgtctgctg gcgggagcgc tatttggtta
    13621 acagtagctt accggcctga gttttgcgca acagatactc ctgaccgttg tgatcgataa
    13681 tgactttgcc gtccggacct aatagcgcct gactgttgac gcgccgttca gcggcaggga
    13741 gaagcgtttc attgtctatt tccttagggt gaggcagctc ggtgttatcc atacgcgaca
    13801 tgttatttat taataatcaa actcacaatg attattatta tcaataatta atgcgataac
    13861 agcaagtgct aattctgtgg agtgatatac gcgcgcgtag agaaaagggt gggtaacgca
    13921 tcgaagaaac gcccatcccg gcaggatggg cgagctatta aaagcggctg tctaccgccg
    13981 cggcaagttt ttccaacaga acttccgtat cttcccagtt caggcaggga tcggtaatgg
    14041 attgaccata gattaacggt tgaccgctga taattttttg cgtgccttcc cgtaaaaaac
    14101 tctctgccat aatcccggca attgccgtgg agccattacg aatctgctgg caaatatcat
    14161 cacatacgtc caactggcgg cgatgctgtt tttgacagtt gccgtggctg aagtcgacga
    14221 ccagatgttc cggcagatca aattcatgca acgtgtcgca ggcggcggca atatcttcag
    14281 cgtggtagtt cggtttttta ccgccgcgca tgatgatgtg cccatacggg ttgccactcg
    14341 tttggtagat agtcatctgt ccgtctttat ccggcgagag aaacatatga ctggcgcggg
    14401 aggcgcgaat agcatcaacg gcaatgcggg tattgccatc cgtaccattt ttaaagccga
    14461 ccgggcaaga gagcgcagaa gccatttccc gatggatttg gctttcggtg gtacgcgcgc
    14521 caatcgttcc ccaactgatc agatcggcaa taaactggcc ggtgaccata tcaagaaatt
    14581 ctgtggcggt cggtactccc agttcgttca cctgcaatag caagcgacgc gccagttcaa
    14641 gcccatgatt gacgcggtaa ctgccattca agtcgggatc ggaaatcagg cctttccatc
    14701 ccacgacggt gcgcggtttt tcaaaatagg tgcgcatgac gatttccaga cgcgcctgat
    14761 gcttttggcg ttgtgcctgg agctgcgtcg cgtattccat ggcagcattc agatcgtgaa
    14821 tcgaacaggg gccaatgacg accagtagcc gtggatcttc accatttaaa atcttttcta
    14881 tccggcgtcg ggagtcggta acgtgactgg cgacggagga cgatacagga taccgctgcg
    14941 cgagttcggt tggtgttacc aggctgtcga tacgcgcagt acggagttcg tcggttctgt
    15001 tcattacaag tctcagaaat ttgttgtttc aacggcagga ctaccgggaa gtgatgggca
    15061 tcacgataaa ccaatccctg ctgatttcaa gtgcgaggcg tgtcacacct cgcaggcaga
    15121 acggcatgat aacaaaaacc aatccattaa actagtttac tagtacatcc tgcggttaag
    15181 ccccataata tcgagaatct tggtggctat ctcttcaacg gaataattgg tgctgttcag
    15241 gcaggggatc tgattcttac gatacagcgc ttcgacctcc gccacttcca tgcggcactg
    15301 acgcaacgag gcatagcgac tgttttcacg gcgttcttcg cgaattgccg ccaggcgttc
    15361 agggtcaatt gtcaggccga acagtttatg ttgtagcggt tttaacgatg tgggcagcgt
    15421 caaattatcc atatcatcgg cgatgaaagg gtagttagcc gcacgaatac cgaattgcat
    15481 tgccagatag agactggtgg gcgtttttcc acagcgcgaa acgccaagta aaatgacctg
    15541 ggcctgatcg aggttgcgca atgaaatgcc atcatcatgc gccagggtat aatcgatagc
    15601 ggcaatacgg gcgtcatact tgttcaggtt acccggatta agcccatgag tacgatgagc
    15661 gatcggcgtc ggatccagtt tcatctcctg ctgaagcggc gccaccagcg cctggacgat
    15721 atcctggcag aagccttcgc tctgcaagat gatggcgcga atttcaggta aaacaatcga
    15781 gtaaaacacc agcgggcgaa cgccggtttg ctgataaatg gcgtcaattt ggtctttgac
    15841 ggcgcgggcg cgactttcgt tttccacgaa tggcagcgtg atgctgctga tcgtcaccgg
    15901 aaactgcgac ataaccgcgt gacccaggac ctcggcggtg atggcggtac catcagaaat
    15961 atagaaaaca tggcgatcaa caacattatc ca
//
LOCUS       DAJVSD010000088        15847 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.088, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000088 DAJVSD010000000
VERSION     DAJVSD010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 15847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15847
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.088"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            141..450
                     /locus_tag="OQP62_002262"
                     /pseudo
     CDS             141..450
                     /locus_tag="OQP62_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460460.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1161 domain-containing protein"
     gene            604..3045
                     /locus_tag="OQP62_002263"
     CDS             604..3045
                     /locus_tag="OQP62_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit A"
                     /protein_id="HCS1721803.1"
                     /translation="MMPGEKQQTGVSRRTLVKSAALGSLALAAGGVSLPFGMRTAAAA
                     VQQAMRNEEDKIVWGACSVNCGSRCALRLHVKDNEVWWVETDNTGDDVYGNHQVRACL
                     RGRSIRRRINHPDRLNYPMKRVGRRGEGKFERISWQEALDTISASLKKTVEIYGNEAV
                     YIHYSSGIVGGNITRSSPSASPVKRLMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDG
                     NSTSDIENSKLVVMFGNNPAETRMSGGGITWFLEQARERSNARMIVIDPRYTDTAAGR
                     EDEWIPIRPGTDAALVAGIAWVLINENLVDQPFLDNYCIGYDEKTLPADAPPNGHYKA
                     YILGQGEDGIAKTPQWASHITGIPADRIIKLAREIGSVKPAYICQGWGPQRQANGEQT
                     ARAIAMFPILTGNVGIHGGNGGARESTYTITIERLPVLENPVKTAISCFSWTDAIARG
                     PEMTALRDGVRGKDKLDVPIKFLWNYAGNTLINQHSDINKTHEILQDEAKCEMIVVID
                     NFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFIQPATTPKFERKPIYWVLS
                     EIARRLGDDVYQRFTEGRTQAQWLQYLYAKMQARDPALPAYDELKKMGIYKRKDPNGH
                     FVAYKKFREDPQANPLKTPSGKIEIYSSKLAHIASTWELAEGDVISPLPIYTPTFEGW
                     DDPKRSTFPLQLFGFHYKSRTHSSYGNIDVLQAACRQEVWINPLDAQKRGIANGDKVR
                     VFNDRGEVRLPAKVTPRILPGVSAMGQGAWHNADMAGDKIDHGACINTLTTLRPSPLA
                     KGNPQHTNLVEIEKI"
     gene            3147..5582
                     /locus_tag="OQP62_002264"
     CDS             3147..5582
                     /locus_tag="OQP62_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit A"
                     /protein_id="HCS1721804.1"
                     /translation="MKITNPEALMAASISRRSLVKTSAIGSLALASSAFTLPFSRIAH
                     AAADLASGNMAEKAVWSSCTVNCGSRCLLRLHVKDDTVYWVESDTTGNDEYGNHQVRA
                     CLRGRSIRRRMNHPDRLKYPMKRVGKRGEGKFERISWDEALDTIGDNLKRILKDYGNE
                     AVHVLYGTGVDGGNITNSNVPYRLMNACGGYLSRYGSYSTAQISAAMSYMFGGNDGNS
                     PDDIANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGRED
                     EWLPIRPGTDGALAAAIGWVLITEDLIDKPFLDKYCIGYDETTLPASAPRNAHYKAYI
                     LGQGEDGIAKTPQWAAQITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTAR
                     AIAMLSVLTGNVGINGGNSGVREGTWDLGVEWFPMLENPVKTQISVFTWTDAIDHGAE
                     MTATRDGVRGKDKLDVPIKFLWCYASNTLINQHGDIAHTHEVLQDDSKCEMIVGIEHF
                     MTASAKYCDILLPDLMPTEQEDLISHESAGNMGYVILGQPATSPKFERKPIYWTLSEV
                     AKRLGPDVYQTFTEGRTQHEWVKYLHAKTKARNPEMPDYEEMKQTGIFKKKCPEEHYV
                     AFRSFREDPAANPLKTPSGKIEIYSERLATLANTWELKKDEIIHPLPAYTPGFDGWDD
                     PLRQRYPLQLTGFHYKARTHSSYGNIDVLQQACPQEIWINPIDAQARGIQHGDTVRVF
                     NQNGEMLIPAKVTPRILPGVTAIGQGAWLNADMFGDKVDRGGSINILTSHRPSPLAKG
                     NPSHSNLVQVEKA"
     gene            5593..6210
                     /gene="dmsB"
                     /locus_tag="OQP62_002265"
     CDS             5593..6210
                     /gene="dmsB"
                     /locus_tag="OQP62_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
                     /protein_id="HCS1721805.1"
                     /translation="MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPDVSFRRIYEYAG
                     GDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGC
                     RYCHMACPYGAPQYNAAKGHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDELRK
                     KHGELAAVAPLPRTHFTKPNIVIKPNANSRPTGDTTGYLANPKEV"
     gene            6212..7066
                     /locus_tag="OQP62_002266"
     CDS             6212..7066
                     /locus_tag="OQP62_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit
                     family protein"
                     /protein_id="HCS1721806.1"
                     /translation="MGSGWHEWPLVLFTVLGQCVAGALIVSGYGWLTTKDDVAKQRIV
                     RSMFFLWLVMGLGFLASIMHLGLPMRAFNSLNRVGASALSNEIAAGSVFFAVGGIWWL
                     VAVLGKMPPALGKVWLLVSMALGVAFIWAMTLVYQIDTVPTWYNGYTTLAFFLTAFLC
                     GPVFAALLLRIARVPFCSVTFASISGLALVVCVAVIVLQGLSLSAIHSSVQQASHLAP
                     DYGMLQVWRIVLLAAGLGCWLCPLIRRREPHTVGLLLGVVLVLAGEIIGRGLFYGLHM
                     TVGMAVAG"
     gene            7109..7723
                     /gene="dmsD"
                     /locus_tag="OQP62_002267"
     CDS             7109..7723
                     /gene="dmsD"
                     /locus_tag="OQP62_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tat proofreading chaperone DmsD"
                     /protein_id="HCS1721807.1"
                     /translation="MTTFLQRDDFAVTARVLGALFYYSPESHETAPLVQALLNDDWQA
                     QWPLDAEALAPVAAMFKTHSEESLPQAWQRLFIGPYALPSPPWGSVWLDRESVLFGDS
                     TLALRQWMRENGIQFEMQQNEPEDHFGALLLLAAWLAENGRHHECEQLLAWHLFPWSP
                     RFLDVFIDHAGHPFYQALGQLARLTLAQWQAQLIIPVAVKPLFR"
     gene            8028..8738
                     /gene="osmY"
                     /locus_tag="OQP62_002268"
     CDS             8028..8738
                     /gene="osmY"
                     /locus_tag="OQP62_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmoprotectant ABC transporter permease OsmY"
                     /protein_id="HCS1721808.1"
                     /translation="MHILTLKRVLGFTIVILLLLALFIWGIGLETLKARQVDLLYLGQ
                     RHLMLVFTSMFFALLVGIPSGILLSRPAAKGFAEYVMQIFNVGNTLPPLAVLALAMVI
                     IGIGDTPAIVALFLASLLPIVRNTYAGLCSVPASLIEAANGIGMTKWQRLRQVELPNA
                     WPVMLSGIRIATAINVGTAPLAFLIGASSYGELIFPGIYLNDFPTLILGATATALFAL
                     ILDTLLAWFGRRLSPHTV"
     gene            8767..9669
                     /gene="osmX"
                     /locus_tag="OQP62_002269"
     CDS             8767..9669
                     /gene="osmX"
                     /locus_tag="OQP62_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmoprotectant ABC transporter substrate-binding
                     protein OsmX"
                     /protein_id="HCS1721809.1"
                     /translation="MRFKKHLLGWLATTLLFSSQTQAAPLVLATKSFTEQHILSAMTV
                     QYLQKKGFQVQPQTNIAAVISRNAMVNKQIDITWEYTGTSLIIFNRIDKRMSPQETYD
                     TVKRLDAKLGLVWLKPADMNNTYAFAMQRKRAESENITTISQMVAKIEQVRQNDPDHN
                     WMLGLDLEFAGRSDGMKPLQQAYQMQLDRPQIRQMDPGLVYNAVRDGLVDAGLVYTTD
                     GRVKGFDLKVLEDDKGFFPSYAVTPVVRKEVLEANPGLDDALNTLSGLLNNDVISTLN
                     AQVDIEHRTPQQVAHQFLQDKGLL"
     gene            9679..10326
                     /gene="osmW"
                     /locus_tag="OQP62_002270"
     CDS             9679..10326
                     /gene="osmW"
                     /locus_tag="OQP62_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmoprotectant ABC transporter permease OsmW"
                     /protein_id="HCS1721810.1"
                     /translation="MDTIHYMLDNAGYLASLTFQHLWLVALAVGLAIIIGVPLGVLIV
                     RHKWLATPVLGAATLLLTIPSIALFGLMIPLFSLIGHGIGVLPAVTAVFLYSLLPIVR
                     NTHTALDSLPPGLREAGRGIGMTFWQRLRWVEIPMALPVIFGGIRTAVVMNIGVMAIA
                     AVIGAGGLGLLLLNGISGSDIRMLIAGALMICLLAIVLDWLLHRLQVVLAPKGIR"
     gene            10326..11474
                     /gene="osmV"
                     /locus_tag="OQP62_002271"
     CDS             10326..11474
                     /gene="osmV"
                     /locus_tag="OQP62_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmoprotectant ABC transporter ATP-binding
                     protein OsmV"
                     /protein_id="HCS1721811.1"
                     /translation="MIKLENLTKQFVQKKGQPLKAVDNVNLNVPEGEMCVLLGPSGCG
                     KTTTLKMINRLIAPSSGNILINGENTNDMDTVTLRRNIGYVIQQIGLFPNMTIEENIT
                     VVPRMLGWDKARCKQRAEELMDMVALDARKFLHRYPKEMSGGQQQRIGVIRALAADPP
                     VLLMDEPFGAVDPINREVIQNQFLDMQRKLKKTVMLVSHDIDEALKLGDRIAVFRQGR
                     IVQCASPDELLAKPANEFVGSFVGQDRTLKRLLLVSAGDVTDQQPTITARPSMPLSEA
                     FGIMDDHDIRAITVIDNDGKPLGFVKRREARNASGICADITHPFRITGKAEDNLRIVL
                     SRLYESNTSWMPIVDEDGRYNGEISQDYIADYLSSGRTRRALNIHESS"
     gene            11610..12899
                     /gene="clcB"
                     /locus_tag="OQP62_002272"
     CDS             11610..12899
                     /gene="clcB"
                     /locus_tag="OQP62_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460450.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="voltage-gated ClC-type chloride channel ClcB"
                     /protein_id="HCS1721812.1"
                     /translation="MHRLHAYPDLRAMFRRLLIATLIGILAALAVAAFRHAMQLLEWI
                     FLSNDTGSLVNAAEGLSPWRRLITPALGGLAAGLLLWGWQKMNQQRPHAPTDYMEALQ
                     TDGQFDVGASLVKSLASLLVVVSGSAIGREGAMILLAALAASSFARRFTPREEWKLWI
                     ASGAAAGMAGAYHAPLAGSLFIAEILFGTLMLASLGPVVVSAVVALLTTHVLNGSDSL
                     LYTVHLTVDLYAREYVMIVSTGLVAGLWGPLLMWLMTASHNSFLRLKLSPPWQLALGG
                     LIVGLLSLLTPTVWGNGYSVVQSFLLSPPLFSLIGGIFACKILAVLASSGSGAPGGVF
                     TPTLFVGLSIGMFLGRIWGFWLPGSDEIAILLGLAGMATLLAATTHAPIMSTLMICEM
                     TGEYQLLPGLLIACVVASVLSRTLRHDSIYRQHAAEH"
     gene            complement(12855..13550)
                     /gene="bioD"
                     /locus_tag="OQP62_002273"
     CDS             complement(12855..13550)
                     /gene="bioD"
                     /locus_tag="OQP62_002273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HCS1721813.1"
                     /translation="MLKRFFITGTDTSVGKTVVSRALLQALSSGGKSVAGYKPVAKGS
                     KETPEGMRNKDALVLQSVSSLELPYEAINPIALSEEESSVAHSCPINYTLLSNGLASL
                     SDKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAVA
                     NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLS
                     MLGSVLAVDRIMA"
     gene            complement(13676..14896)
                     /locus_tag="OQP62_002274"
     CDS             complement(13676..14896)
                     /locus_tag="OQP62_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HCS1721814.1"
                     /translation="MVADSQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAP
                     ASITKIVREMLEAHLVQELEIKEAGSRGRPAVGLMVETEAWHYLSIRISRGEIFLALR
                     DLSSKLVVEECLALPLNEATPLLERIITHVDRFFTRHQQKLERLTSIAITLPGIIDTE
                     NGVVHRMPYYEDVKEMPLGDALERHTGVPVYIQHDISAWTMAEALFGASRGARDVIQV
                     VIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVNPYGKRCYCGNHGCLETIASVDSVLE
                     LTQLRLNQSISSMLHGQPLTVDSLCQAAMQGDLLAKDIISGVGAHVGRILAIMVNLFN
                     PQKILIGSPLSKAADILFPAIADSIRQQALPAYSRNTVVESTQFTNQSTMAGAALVKD
                     AMYNGSLLIRLLQG"
     gene            complement(15024..>15847)
                     /locus_tag="OQP62_002275"
     CDS             complement(15024..>15847)
                     /locus_tag="OQP62_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1721815.1"
                     /translation="LNISQPPLSQQIQILEQQVGARLLARTNRSVALTAAGRQFLADS
                     RHILSLVNDAAARAERLHQGEAGEIRIGFTSSAPFIRAVSHTFSLFRQSYPGVHMQTR
                     EMNTREQIAPLNEGVLDIGLLRNTPLPDTLNREVILHEPLMAMIPREHRLAQKPVVSL
                     TELAEEPFVFFDPHVGTGLYDDILGLMRRYNLSPTITQEVGEAMTIIGLVAAGLGVSI
                     LPASFKRVQMSEMRWVPLAEEDAVSEMWLVWPKHHEQSHAVQRFCQLLLLAARQD"
BASE COUNT         3683 a         4376 c         4164 g         3624 t
ORIGIN      
        1 tcatgcacaa taacgtcagt aaaaggggtt tcttcacgcg tgtcaccagg atgaaaagat
       61 atttatcatc atattagcaa atacagttat ttacacgaaa aatgctaagc ttagaacatc
      121 gtcattaatc acaggagttc atgatgaaaa tcgcaactgc aatagccgct ctggcgttag
      181 tcagcgcccc ctcgctggtg atggcggcac cgggatcgtg cgagagagta aaaagcgata
      241 tcgaacaacg tatcatcaat aacggcgtgc cggcggataa ttttacgctc actatcgttc
      301 ctatacgacc aggccgatca gccggactca caggtggtgg gccattgcgc gaacgacacg
      361 cataaaattc tttatacccg caccagcagc ggcaatgcgc cagccaatac ctctcccgct
      421 caggacggtt catccgccga accacaataa cctcctcctg ccctccgggt ccggagggta
      481 acgctctttg acatggatta ataatcctta ctcccaaagg ggtaaactca ttacatcatt
      541 agcatgttaa taatttcgct atagtcatta atatatagcg aaacgataac gacaatggag
      601 tgagtgatgc ccggagaaaa gcagcaaaca ggcgttagcc gcaggacgtt agtgaaatca
      661 gcggcgcttg gctcactggc gctggctgcc ggaggcgtat ctttaccgtt tgggatgcgt
      721 accgcggccg cggcggtgca gcaggctatg cgcaacgaag aagataaaat cgtctggggc
      781 gcctgttcgg tcaactgcgg cagtcgctgc gccctgcgtc tgcatgtaaa agataatgaa
      841 gtctggtggg ttgaaactga taacactggc gacgatgtct acggcaatca tcaggttcgc
      901 gcctgtctgc ggggccgttc aatccgtcgg cgcattaacc atccggatcg ccttaactat
      961 cccatgaaac gcgttggccg ccgcggcgaa ggcaaatttg aacgcattag ctggcaggaa
     1021 gcgctggaca ccattagcgc cagcctgaaa aagaccgtag agatctacgg caatgaagcc
     1081 gtttatatcc actattcatc cggcatcgta ggcggcaaca taacccgctc gtcgccttcc
     1141 gcctcgccgg tgaagcgttt gatgaactgc tacggcggtt cgttgaatca atacggctca
     1201 tacagtaccg cgcaaatttc ttgcgccatg ccctacacct atggatccaa cgacggcaac
     1261 agcacatctg atatcgaaaa cagtaaactg gtggtcatgt tcggcaataa tccggctgaa
     1321 acacgcatga gcggcggcgg cattacctgg tttctggagc aagcgcgtga acgctcaaat
     1381 gcgcgcatga tcgtgataga tccgcgctat accgataccg ctgccggacg tgaagacgag
     1441 tggataccta ttcgccccgg caccgacgcc gcgctggtgg cgggaattgc ctgggtattg
     1501 attaacgaaa atctcgttga ccagcctttt ctcgacaact attgcatcgg ctacgatgaa
     1561 aagacccttc cggctgacgc cccccccaat ggccattata aggcttatat tttgggccag
     1621 ggcgaggacg gtatcgccaa aacgccgcag tgggcgtcac acattaccgg catccccgcc
     1681 gatcggatta tcaaactggc gcgcgagata ggtagcgtca agccggccta catctgtcag
     1741 ggttggggcc cgcagcgtca ggcgaacggc gaacaaaccg ctcgcgccat cgccatgttt
     1801 ccgattctga ccggcaacgt cggcattcat ggcggtaatg gcggcgcacg cgaatccact
     1861 tacaccatta ccattgaacg tctgccggtc ctggagaatc ccgttaaaac cgccatctcc
     1921 tgctttagct ggacggacgc cattgcgcgc ggcccggaaa tgaccgccct gcgcgacggc
     1981 gtacgcggca aagataagct ggatgtcccg atcaaatttc tatggaacta cgctggcaac
     2041 accctgatta atcagcattc ggatattaat aaaacccatg aaattcttca ggatgaagca
     2101 aaatgcgaaa tgattgtggt catcgacaat tttatgacct cttccgcgaa gtacgccgat
     2161 attttactgc cggatctcat gaccgtcgaa caggaagata tcatccccaa tgattacgcc
     2221 ggcaatatgg gatatctgat ttttatccaa ccggcgacga cgcctaagtt tgaacgcaag
     2281 cccatctact gggtactcag cgaaatcgcc agacgcctcg gtgacgatgt gtatcagcgg
     2341 tttaccgaag gccgtaccca ggcgcaatgg ctgcaatatc tgtacgccaa aatgcaggca
     2401 agagatccgg cattgcccgc gtatgacgag ctaaaaaaaa tgggcatcta taaacgcaaa
     2461 gatcccaacg gccactttgt cgcctataaa aaatttcgtg aagatccgca ggccaatccg
     2521 ttaaaaacgc cgtccggtaa aatcgaaatc tactcaagca aactcgctca catcgccagt
     2581 acctgggagc tggcggaagg cgacgtgata agcccactgc cgatttatac ccctactttt
     2641 gaaggatggg acgatccgaa gcggagcacc ttcccgctac agctgtttgg ctttcactat
     2701 aaatcccgta cccattcaag ctacggcaat attgatgttc tgcaggccgc ctgtcgccag
     2761 gaggtgtgga taaatccgct tgatgcgcaa aaacgtggta tcgcgaatgg cgataaggtt
     2821 cgcgtcttta acgatcgtgg agaagtgcgt ctacccgcca aggtcacgcc gcgtattctg
     2881 ccgggcgtca gcgcgatggg tcagggcgca tggcataatg cggatatggc tggcgataaa
     2941 attgaccacg gcgcctgcat caatacgctc acgacgctgc gtccttcccc cctggcaaaa
     3001 gggaatcctc aacatacaaa tctggtggaa atcgaaaaaa tctaagccgc ctgctccggg
     3061 gcgtttttac gcgcccggag ctccccgttt tgcgaacaca acgacattta aaactctttt
     3121 ttggatgagc atagtgagga gctgttatga aaatcaccaa ccctgaggca ttaatggcgg
     3181 ccagtatcag ccgacgaagc ctggtgaaaa cctccgctat cggtagcctt gcgcttgcca
     3241 gtagcgcttt cacccttccg ttctcccgca tcgcccacgc cgcagcagac ctcgcatctg
     3301 gcaatatggc agaaaaagcg gtctggagtt catgtaccgt taactgcggc agccgctgcc
     3361 tgctgcgcct gcacgtaaaa gatgacaccg tatattgggt tgaatcagat accacgggca
     3421 acgatgaata tggcaaccat caggtacgcg cctgcctgcg cggtcgttct attcgtcgcc
     3481 ggatgaatca tcccgatcgc ctgaaatatc cgatgaaacg cgttggtaaa cgaggagaag
     3541 gcaaattcga acgtatcagt tgggatgaag cgttggatac catcggcgat aaccttaaac
     3601 gcatcctcaa ggactacggc aacgaagcgg tacatgtcct ttacggtacc ggcgtggacg
     3661 gcggcaatat taccaattct aacgtaccgt atcgcctgat gaacgcctgc ggcggctatc
     3721 tcagccgtta cggtagctac agcaccgccc aaatcagcgc ggccatgagc tatatgttcg
     3781 gcggcaacga cggcaacagt ccggatgata tcgccaatac aaaactggtg gtgatgtttg
     3841 gcaataaccc cgcggaaaca cgtatgagcg gcggcggcgt gacatactat gtcgaacagg
     3901 cgcgcgaacg ctccaacgcc cggatgatcg tcattgaccc gcgttataac gacactgctg
     3961 ccggccgcga agacgagtgg ctgccgattc gcccaggtac cgatggcgcg ctggcggcgg
     4021 caatcggctg ggtgctgatt accgaagatc ttattgataa accgtttctg gataaatact
     4081 gcatcggcta cgacgaaacc actctgcccg cctcggcccc gcgtaacgcg cactataaag
     4141 cctatatttt gggtcagggc gaagacggta ttgctaaaac gccgcaatgg gccgcgcaga
     4201 ttaccagtat tccggcggaa aaaatcattc aactggcgcg ggaaatcggc tcggcgaaac
     4261 cggcttacat ttgccagggc tggggaccgc aacgccactc taacggggag cagaccgcac
     4321 gcgcaatcgc catgttgtct gtactcaccg gtaacgtcgg cataaatggc ggtaattccg
     4381 gcgtgcgcga aggcacctgg gatctgggcg tcgaatggtt tcctatgctg gagaacccgg
     4441 taaaaaccca gatttcggtc tttacctgga ccgacgctat cgatcatggc gcggaaatga
     4501 ccgccacacg cgacggcgtg cggggaaaag acaagctcga cgtgccgatc aaatttttgt
     4561 ggtgctacgc cagtaatacg ctgatcaatc agcatggcga tatcgcccac acccacgagg
     4621 tgcttcagga cgacagtaaa tgtgaaatga tcgtcggcat cgagcacttt atgaccgcgt
     4681 cggcaaaata ttgcgacatt ctgctgcctg atttaatgcc gaccgagcag gaagatctga
     4741 tttcccacga atccgcaggc aatatgggct atgtcattct tggtcagccc gccacctcgc
     4801 cgaaatttga aagaaagccc atttactgga cgctcagtga agtggctaaa cggcttggtc
     4861 cggacgtata ccagaccttc acagaaggcc gcacgcagca tgagtgggtc aaatacctgc
     4921 acgcaaaaac caaagcgcgt aacccggaaa tgccggatta cgaagagatg aaacagacag
     4981 ggattttcaa gaaaaaatgc ccggaggagc actacgtcgc tttccgctca ttccgcgaag
     5041 accctgccgc caacccactg aaaacgccgt ccggtaaaat cgaaatctat tccgagcgtc
     5101 tggcaaccct cgccaacacg tgggagctga agaaagatga gattatccat cctttacccg
     5161 cctatacgcc aggctttgac ggttgggacg atccgcttcg tcagcgctac ccgctacagc
     5221 taaccggctt ccactataaa gcgcgtaccc actccagcta cggcaatatc gacgtcctgc
     5281 aacaggcgtg tccgcaggag atctggatca acccgattga tgcgcaagcg cgcggcattc
     5341 agcacggcga caccgtgcgg gtctttaacc agaatggaga gatgctcatt ccggcaaaag
     5401 tcacgccgcg catattgcct ggcgtcaccg ctatcggcca gggcgcctgg ttaaatgccg
     5461 acatgtttgg cgacaaagtc gatcgcggcg gctccattaa cattctgacg tcgcaccggc
     5521 cttccccact ggcgaaaggt aatccgtcac acagtaatct tgttcaggtt gaaaaggcgt
     5581 aaggagtaac cgatgacaac ccagtatgga ttttttattg attccagccg ttgcaccggt
     5641 tgcaaaacct gcgaactggc ctgcaaggac tacaaagatc tcactcccga cgtcagcttc
     5701 cgccgcattt atgagtatgc gggcggtgac tggcaggaag ataacggcgt ctggcaccag
     5761 aacgtctttg cctactatct ctccatctcc tgtaaccact gcgaagaccc ggcctgtacc
     5821 aaagtctgcc cgagcggcgc gatgcacaag cgcgatgacg gttttgtggt ggtgaatgaa
     5881 gaggtctgta tcggctgccg ctactgccac atggcctgcc cgtacggcgc gccgcagtac
     5941 aacgcggcca aaggtcatat gaccaagtgc gacggctgtt atgaccgggt ggcggaaggc
     6001 aagaaaccga tttgcgtgga atcctgcccg ctgcgggcgc tggatttcgg cccgatagac
     6061 gaactgcgca aaaaacacgg tgagctggct gccgtcgcgc cgttgccgcg cacgcatttc
     6121 acgaagccga atattgtgat taaacccaac gccaacagcc gcccgaccgg ggacaccacc
     6181 ggttatctgg ccaatccgaa ggaggtataa gatgggaagt ggatggcatg aatggccgct
     6241 ggtcctgttt acggtgctgg gtcaatgtgt ggccggggcg ctgatcgtga gtggatatgg
     6301 ctggttaacc accaaagacg atgtggcaaa acaacgcatc gtgcgcagca tgttttttct
     6361 gtggctggtg atgggactgg gattcctcgc gtcgattatg catctcggct tgccgatgcg
     6421 cgcgtttaac tcgcttaacc gcgtaggcgc ttccgcactg agtaatgaaa tcgccgcagg
     6481 atcggtgttc tttgccgtag gcggcatctg gtggctggtg gcggtactcg gtaaaatgcc
     6541 cccggcgctg ggtaaagtgt ggctgctggt cagtatggcg ctcggcgttg cattcatctg
     6601 ggcaatgacg ctcgtttatc agatagatac cgtgccaacc tggtataatg gctacaccac
     6661 gctggccttt ttcctcacgg cattcctgtg cggtccggtg tttgcggcgc tactactacg
     6721 catcgcgcgc gtcccatttt gcagcgtgac gtttgccagt attagcggcc tggcgttggt
     6781 ggtgtgcgtg gcggtcatcg tactacaggg actgtccctc tcagccattc acagttccgt
     6841 gcaacaggcc agccatctcg caccggatta cggtatgcta caggtctggc gcattgtctt
     6901 gcttgctgcc ggattaggtt gctggctatg tccactaatc cgtcgccgcg aaccgcatac
     6961 cgttggtttg ctgctcggtg tcgtactggt gctggcgggc gaaattattg gccgcggact
     7021 tttttatggc ctgcatatga ccgtaggtat ggccgtcgca ggttaattta tgcgtgcggg
     7081 gcgacccgca cctttcggga ttgtttgaat gaccactttt ttacaacgtg atgattttgc
     7141 agtaacggcg cgtgttcttg gcgcgttgtt ttattattcg ccggaaagcc acgaaaccgc
     7201 tcctctggtc caggcgctat taaacgacga ctggcaggcg cagtggccgc ttgatgccga
     7261 ggcgcttgca cctgtggcgg ctatgtttaa gacccacagc gaagagtcgt tgccacaagc
     7321 ctggcagcgc ctgtttatcg gcccttacgc tctgccgtct ccgccgtggg gttccgtctg
     7381 gctggatcgt gagagcgtat tatttggcga ttctacgttg gcgctacgtc agtggatgcg
     7441 cgaaaacggg attcagtttg aaatgcagca aaacgagcca gaagatcatt ttggggcgct
     7501 gttgttgctg gcggcctggc ttgccgagaa tggccgtcat catgaatgcg aacaactcct
     7561 ggcctggcat ctgtttccgt ggtcgccccg ctttctggac gtatttatcg atcatgccgg
     7621 gcatccgttt tatcaggcgt tggggcaact ggcgcgtctg actctggcgc aatggcaagc
     7681 tcaactcatt attcccgtcg ctgtaaaacc gttattccgt taatccccac aaaaggcagg
     7741 attttacctg ccttttctcc cattgtggcc tatttttacc tacaaaaagt gacaacgtca
     7801 cacctcgctt ctatttttaa gataattctt tatcgtgaat gttcacgcta agccgcataa
     7861 gggcaaaaca taattgttaa tagatgttta acagtgttaa acatcacgct ccgctggaat
     7921 ccttcccaac ctgttgctat agctcaaagc accctgccgg aacatggcat aacaacacgc
     7981 gactcttaac gtcgccataa cacatgcaaa cagggagaca caccgcaatg cacatcctca
     8041 ccctaaaacg cgtacttggg ttcactatcg tcattctgct gttactggcg ctgtttatct
     8101 ggggaatcgg tctggagacg ctgaaagcgc gtcaggtcga tctgctgtat ctcggacaac
     8161 ggcatttgat gctggtcttt acgtccatgt tttttgcttt actggtcggt atcccgagcg
     8221 ggattttact cagccgacct gcggcaaaag gatttgctga atatgtcatg caaatcttta
     8281 atgttggtaa taccttgccg ccactggccg tcctggcctt agcgatggtg attatcggga
     8341 tcggcgatac gcccgccatt gtcgcgctat ttctggcttc tcttctgcct atcgtccgca
     8401 atacctatgc aggcctctgt tccgttcccg cctcactgat tgaagcggcg aacgggattg
     8461 ggatgacaaa atggcagcgg cttcgccagg tagagctacc taatgcgtgg ccagtgatgc
     8521 tgtccggtat tcgcatcgcg accgccatca atgtcggcac cgcgccgctg gcctttctga
     8581 tcggcgccag cagctacggc gagctgattt ttccggggat ttatctcaac gattttccga
     8641 cgttgattct cggcgcaacg gccacggcgt tattcgcgct gattcttgac actctgcttg
     8701 cctggtttgg gcgacgcctt agccctcata ccgtctgaac gcataaataa caataaggag
     8761 cgttaaatga gattcaaaaa acacctgttg ggatggcttg ccacaacgct gttgttcagt
     8821 agccagacgc aggccgcgcc gctggttctc gccaccaaaa gctttaccga gcagcatatt
     8881 ctttccgcta tgaccgttca gtatttgcag aagaaaggct ttcaggttca gccgcaaacc
     8941 aatatcgccg cggtgatttc acgtaatgcg atggtgaata aacaaattga tattacctgg
     9001 gaatataccg gtacatcgct gattattttc aaccgtatcg ataagcgcat gagtccacag
     9061 gaaacctacg acacggtaaa acgcctggat gcgaagctgg gcctggtatg gctcaaaccg
     9121 gctgacatga acaatactta cgcgttcgcg atgcagcgta aacgcgccga gtcggaaaat
     9181 atcaccacca tctcgcaaat ggtggcaaaa atcgaacaag tccggcagaa cgatcctgac
     9241 cacaactgga tgctcggcct cgatctggaa tttgccgggc gcagcgacgg gatgaagccc
     9301 cttcagcaag cctaccagat gcagctcgat cgcccgcaaa tacgacagat ggacccaggg
     9361 ctggtctata acgccgttcg ggatggactg gttgacgccg ggctggtcta taccaccgac
     9421 ggacgggtga aagggtttga tctgaaagtg ttggaagatg ataaaggctt ctttccaagt
     9481 tacgctgtca cgcccgtggt gcgtaaagag gtgctggaag ccaatcctgg tcttgatgac
     9541 gccttaaaca ccctttccgg cctgctcaat aacgatgtga tatcgaccct aaacgcccag
     9601 gtcgatatcg agcatcgcac gccgcaacag gtagcccatc aatttttgca ggacaaaggt
     9661 ctgctgtaag gagcgcctat ggatacgata cattatatgc tggataacgc aggctatctc
     9721 gccagcctta cctttcagca tctctggcta gtcgcgctgg ccgtcggtct ggcgattatc
     9781 atcggcgtac cgttaggcgt tttgattgta cgccacaaat ggctggcaac gccggtattg
     9841 ggcgccgcca cgctacttct taccattccg tctatcgcgc tgtttggatt aatgatcccg
     9901 ctcttttcgc tgatcgggca tggtattggc gttctgcccg ctgtgacggc cgtttttctc
     9961 tactctttac tgccgattgt ccggaatacc catactgcgc ttgatagttt gccgcccggt
    10021 ctgcgtgaag cgggacgcgg catcggtatg actttctggc aacggctgcg ctgggtcgaa
    10081 atcccaatgg ccctaccggt tattttcggg ggtatccgca ccgcggtagt gatgaatatc
    10141 ggcgtgatgg cgattgccgc ggtgatcggc gccggcggtc tggggctgct actgttaaac
    10201 ggcattagcg gcagcgatat tcgcatgtta attgccggcg cgctgatgat ctgtctactg
    10261 gcaattgtac ttgactggct gttgcatcgt ctgcaagtcg tactggcacc taaggggata
    10321 cgataatgat aaaactggaa aatctcacca aacaatttgt acagaaaaag ggtcagccgc
    10381 taaaagccgt cgacaacgtc aacctgaacg tgccggaagg cgaaatgtgc gtcttactcg
    10441 gtccctccgg ctgcggcaaa accaccacgt taaagatgat caaccggctg atcgcgccca
    10501 gcagcggtaa tattcttatc aacggcgaga ataccaacga tatggatacg gtaacgctac
    10561 gccgcaatat tgggtatgtt atccaacaga tcggcctgtt tcctaatatg acgattgaag
    10621 aaaatattac cgttgtgccg cgcatgttgg gttgggacaa agcgcgctgc aagcaacgcg
    10681 ccgaagagtt gatggacatg gtggcgctgg atgccagaaa atttctgcat cgctatccaa
    10741 aggagatgtc cgggggacag caacagcgta ttggcgtgat ccgcgctctg gccgccgatc
    10801 cgccggtact gctgatggat gagcccttcg gcgcggtgga ccccattaac cgcgaagtga
    10861 tccagaacca gtttctggat atgcagcgta agctaaaaaa gaccgtgatg ctggtcagcc
    10921 atgatatcga cgaagcgcta aaactcggcg accgtatcgc cgtgttccgt caggggcgaa
    10981 ttgtacagtg cgccagtcct gatgaactgc tggccaagcc ggctaacgag tttgtcgggt
    11041 cgtttgtcgg tcaggacaga acgttaaagc gtttgctact ggtctccgca ggcgatgtga
    11101 ccgaccaaca gccaaccatt accgcgcggc cttccatgcc gttaagcgag gcgttcggca
    11161 ttatggatga tcacgatatt cgcgccatta ccgtcattga caacgacggt aagccactgg
    11221 gatttgtgaa gcgccgggag gcgcggaacg ccagcggaat ctgcgccgat atcacccatc
    11281 ctttccgtat tacgggcaaa gcggaagata atctgcgtat tgtgctgtcc agattgtacg
    11341 aaagtaatac cagctggatg ccgatcgttg atgaagacgg acgctataac ggtgaaatct
    11401 ctcaggatta catcgccgat tatctcagct caggccgcac tcgtcgggcg ctaaatattc
    11461 acgaaagcag ctaacgttgc cgccggatcg cctctcgcta tccggcagta tcattattgt
    11521 acgcaatatt atatcgcaca tagtgctttt gcgtctgacg ccatttcccc gcagaatagg
    11581 ctatcctgaa actccctgtt tacccgctca tgcatcgttt acacgcttac ccggatctgc
    11641 gcgcgatgtt tcgtcgcctg ctgatcgcta cgctcatcgg tattctcgcg gcgctggctg
    11701 tcgccgcctt ccgtcatgcg atgcaattgc tggagtggat tttcctgagt aatgacaccg
    11761 gcagtctggt gaatgcggct gaggggcttt cgccctggcg acggctgatt acgccggcgc
    11821 ttggcggcct ggccgctggt ctgttgctgt gggggtggca aaaaatgaac caacagcgcc
    11881 cccatgcgcc cactgactat atggaagcat tgcaaaccga cgggcaattt gacgttggcg
    11941 ccagtctggt gaaatcgctg gcctcgctgc tggtcgtggt cagcggcagc gcaattggtc
    12001 gcgaaggcgc aatgatcctc ctcgccgcgc tggcggcgtc cagctttgcc cgacgcttca
    12061 cgccgcgtga ggaatggaaa ttatggatcg ccagcggcgc cgctgcgggc atggcgggcg
    12121 cttaccatgc gccgctggcg ggcagcctgt ttatcgcgga gatcctgttc ggtaccttaa
    12181 tgctggcttc cctcggcccg gttgtcgttt ccgccgtcgt cgccctgcta accacccatg
    12241 tattaaacgg tagcgattca ctactctata ccgtacatct gaccgttgat ctctacgcgc
    12301 gggagtacgt catgatagtc agtaccggtc tggtcgccgg tctgtggggt ccgttgctga
    12361 tgtggctgat gacggccagc cataatagtt tcttacgctt aaaactgtcc ccgccctggc
    12421 aactggcgtt gggcgggctt attgtcggat tactgtcgtt actcacgccc acggtatggg
    12481 gaaacggcta tagcgtcgta caatcatttt tgctctcccc gccgctattc tcgctgattg
    12541 gcggaatttt tgcgtgcaaa atcctggcgg tgctcgccag cagcgggtct ggcgcgccgg
    12601 gcggcgtctt tacgccaaca ttatttgtcg gattatccat tggaatgttt ctgggtcgga
    12661 tatggggatt ctggctgcca ggctcggatg aaatagcgat tttattgggg ctggcgggta
    12721 tggcgacgct actggcggcg acaactcatg cgccgataat gtccaccctg atgatttgtg
    12781 aaatgaccgg cgagtatcag ttactccccg gtctgctgat tgcctgtgta gtcgcgtcag
    12841 tgctctcgcg aacgttacgc catgattcta tctaccgcca gcacgctgcc gagcattgac
    12901 aaacgaatat actgccccag ctcacgctgc tcggcgcgcg gcaggtacgg taactcgcca
    12961 atcagcggcg ctggcagttt tttcccaagc acatcaataa tttcagcata atgcgccagg
    13021 ccaggattga tacgattcgc cacccagcca attaagggca gtccatcatt agcgacagct
    13081 tgcgcagtca gtagcgcatg attaatgcac ccctcctgaa tccccaccac catcaatacc
    13141 ggtaactgtt cctgtaccac ccattcggac aatggacgta aatcattcat caaactacgc
    13201 cagccaccag tgccctccac aaccacgtgg tccactttat cgctcagact cgccagaccg
    13261 ttggacagca aggtgtaatt tataggacag ctatgcgcga cgctgctttc ttcttcgctt
    13321 aacgcgatcg gattaatcgc ctcatacggc aactccagcg aagagacgct ttgcaatacc
    13381 agagcgtctt tgttgcgcat cccttctgga gtctctttgc tccctttagc gacaggttta
    13441 taccctgcaa cgctcttacc acccgacgat aacgcttgta gtaatgcgcg ggaaaccacc
    13501 gtcttcccaa cagaagtgtc tgtacctgta ataaagaaac gcttcagcat cactaactcc
    13561 accgttatgc ttcgaaaata taagccagga aaataataca gtggagaaag tctaagatat
    13621 ggcaagggca atcagcttga gttagcgcaa atttttgtac aacagttaaa aaatgttaac
    13681 cctgtaatag acgaatcaac aaagagccgt tatacatcgc gtcttttacc aacgccgccc
    13741 cggccatcgt gctctggttg gtaaactgcg tgctttccac taccgtattc ctactgtagg
    13801 cgggcagcgc ctgctgacgg atactgtcag caatggccgg aaaaagaata tcagccgctt
    13861 tacttagcgg cgaaccaata agaatttttt gcggattaaa taaattcacc atgatagcca
    13921 gaatgcgtcc gacatgcgcg ccaacgccgc taataatatc ttttgctaat agatctccct
    13981 gcatcgccgc ctgacacagc gaatctaccg ttaacggctg gccatgcaac attgaactta
    14041 tcgactgatt aagccgaagc tgcgtaagtt ccagcacact atcgacgctg gcgatggtct
    14101 ccagacagcc atgattaccg caataacagc gcttaccata aggattgacc tgggtatgcc
    14161 caatctctac cagactgcta ctgcccgcat gaagcaaatg accgtcggtg ataacgcccg
    14221 cccccacatt atgatcaatc accacctgga taacgtcgcg cgcgccgcgt gaggcgccaa
    14281 aaagcgcctc tgccatcgtc caggcgctaa tatcatgctg aatgtaaacc ggtacgccgg
    14341 tgtgccgctc cagcgcatct cccaaaggca tctctttgac atcttcgtaa tacggcatcc
    14401 ggtgcacaac accgttttcg gtatcgataa tgcccggtaa cgtaatggca atggaggtca
    14461 aacgctccag tttctgctga tggcgggtaa aaaaccgatc aacgtgcgta ataattcgct
    14521 caagcaacgg cgtagcttcg tttaacggca gcgccagaca ctcttctacc accagtttgc
    14581 tgctaagatc gcgcagtgca aggaaaattt cgccacggct aatacgaata gataaatagt
    14641 gccaggcttc cgtttccacc atcagcccga cggcgggacg tccacgactg cccgcctctt
    14701 taatttcaag ttcctgaacc aaatgcgctt ccagcatttc gcgaacaatt ttcgtaatac
    14761 tggcaggcgc caactgcgcc agacgagaca ggtcaattcg cgataccggt ccgagctgat
    14821 caatcaggcg atacactgcg ccagcattgg tctgcttaat ttgatcgata tgcccaggct
    14881 gactatcagc aaccaccgct cactcccttt attttcgcgc tccgaaataa tctgtgtgct
    14941 atggtgaaac acttcaatac tcgccgtcaa ctttttgctt agccgtgtga ttaactgcac
    15001 attttcaccc tttttaagcg taattaatcc tgtcgggcag ccagtaatag cagttggcaa
    15061 aaccgctgta cggcatgact ctgttcatga tgctttggcc ataccagcca catttcagat
    15121 acggcgtcct cttctgccag gggaacccag cgcatctcgc tcatctgtac acgcttaaag
    15181 gatgccggca gaatcgagac gcccagtccc gccgccacca gaccgataat agtcattgcc
    15241 tcgccaacct cctgcgtgat ggtcggcgac aggttatagc gccgcatcag gccgagaata
    15301 tcgtcgtaga gacccgtccc gacatgcgga tcgaaaaaga cgaaaggttc ttccgccagt
    15361 tctgtcagac tgacgactgg cttttgcgcc agccgatgtt cgcgcgggat catggccata
    15421 agcggctcat gcaaaatcac ctcgcgatta agtgtgtctg gcagcggcgt attccgcagc
    15481 aagccaatat ccagtacgcc ttcgttgagc ggcgcgattt gctcacgcgt attcatttca
    15541 cgcgtttgca tatgcacccc cggataggac tggcggaaca acgaaaaggt atgcgatacc
    15601 gcccgaataa aaggcgctga agacgtaaaa ccaatacgga tttcgcccgc ttcgccctga
    15661 tgcaaccgct cggcgcgagc ggcggcgtcg tttaccagac tcaggatgtg tcggctatcc
    15721 gccagaaact gtcgcccggc ggcggttaac gctacgctgc ggttggtccg cgccagtaat
    15781 cgcgcaccga cctgctgctc cagaatttgt atctgctgac tgagcggcgg ctgcgagata
    15841 ttgaggc
//
LOCUS       DAJVSD010000089        15814 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.089, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000089 DAJVSD010000000
VERSION     DAJVSD010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 15814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15814
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.089"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(235..1041)
                     /gene="trpA"
                     /locus_tag="OQP62_002276"
     CDS             complement(235..1041)
                     /gene="trpA"
                     /locus_tag="OQP62_002276"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HCS1721816.1"
                     /translation="MERYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAG
                     ADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMY
                     ANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADD
                     DLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPE
                     QVSAAVRAGAAGAISGSAIVKIIEKNLASPEQMLAELRSFVSAMKAASRA"
     gene            complement(1041..2234)
                     /gene="trpB"
                     /locus_tag="OQP62_002277"
     CDS             complement(1041..2234)
                     /gene="trpB"
                     /locus_tag="OQP62_002277"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HCS1721817.1"
                     /translation="MTTLLNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQ
                     FADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMG
                     KSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVH
                     SGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILD
                     KEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRV
                     GIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALE
                     AFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVHDILK
                     ARGEI"
     gene            complement(2244..3602)
                     /gene="trpCF"
                     /locus_tag="OQP62_002278"
     CDS             complement(2244..3602)
                     /gene="trpCF"
                     /locus_tag="OQP62_002278"
                     /EC_number="4.1.1.48"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional indole-3-glycerol-phosphate
                     synthase TrpC/phosphoribosylanthranilate isomerase TrpF"
                     /protein_id="HCS1721818.1"
                     /translation="MQTVLAKIVADKAICVEARKQQQPLASFQNEIQPSTRHFYDALQ
                     GARTAFILECKKASPSKGVIRDDFDPARIASIYQHYASAISVLTDEKYFQGSFDFLPV
                     VSQSAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDEQYRQLSAVAHSLKMGV
                     LTEISNDEERERAIALGAKVVGINNRDLRDLSIDLNRTRQLAPKLGHGVTVISESGIN
                     TYGQVRELSHFANGFLIGSALMAHDDLNAAVRRVLLGENKVCGLTRAQDAKAACDAGA
                     IYGGLIFVPSSPRAVSVEQAREVISGAPLQYVGVFKNADIADVCQKAAVLSLSAVQLH
                     GSEDQAYVNALREALPRNVQIWKALSVSNALPARDYHHVDKYIFDNGQGGSGQRFDWS
                     LLQGQPLDDVLLAGGLAADNCVQAAQVGCAGLDFNSGVESQPGIKDARLLASVFQTLR
                     AY"
     gene            complement(3606..5201)
                     /gene="trpD"
                     /locus_tag="OQP62_002279"
     CDS             complement(3606..5201)
                     /gene="trpD"
                     /locus_tag="OQP62_002279"
                     /EC_number="2.4.2.18"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional anthranilate synthase glutamate
                     amidotransferase component TrpG/anthranilate
                     phosphoribosyltransferase TrpD"
                     /protein_id="HCS1721819.1"
                     /translation="MADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRL
                     ATMKNPVLMLSPGPGIPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG
                     EILHGKASSIEHDGQAMFAGLANPLPVARYHSLVGSNVPAGLTINAHFNGMVMAVRHD
                     ADRVCGFQFHPESILTTQGARLLEQTLAWAQQKLEPTNTLQPILEKLYQAQTLTQQES
                     HQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADI
                     VGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNAD
                     KSRQALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGV
                     YSPELVLPIAETLRVLGYQRAAVVHSGGMDEVSLHAPTIVAELHDGEIKSYQLTAEDF
                     GLTPYHQDQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHGQEDLKANA
                     QTVLDVLRNGTAYDRVTALAARG"
     gene            complement(5201..6763)
                     /locus_tag="OQP62_002280"
     CDS             complement(5201..6763)
                     /locus_tag="OQP62_002280"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component 1"
                     /protein_id="HCS1721820.1"
                     /translation="MQTPKPTLELLTCDAAYRENPTALFHQVCGDRPATLLLESADID
                     SKDDLKSLLLVDSALRITALGDTVTIQALSDNGASLLPLLDTALPAGVENEVLPAGRI
                     LRFPPVSPLLDEDARLCSLSVFDAFRLLQGVVNIPTQEREAMFFGGLFAYDLVAGFEA
                     LPHLEAGNNCPDYCFYLAETLMVIDHQKKSTRIQASLFTASDLEKQRLNARLAYLSQQ
                     LTQPAPPLPVTPVPDMRCECNQSDDAFGAVVRQLQKAIRAGEIFQVVPSRRFSLPCPS
                     PLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPESSLKYDAASRQIEIYPIAGTRPRGR
                     RADGTLDRDLDSRIELDMRTDQKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDR
                     YSYVMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIADAEGQRRGSYG
                     GAVGYFTAHGDLDTCIVIRSALVENGIATVQAGAGIVLDSVPQSEADETRNKARAVLR
                     AIATAHHAQETF"
     misc_feature    complement(6786..6881)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00513"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Trp leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00513"
     gene            complement(6858..6902)
                     /gene="trpL"
                     /locus_tag="OQP62_002281"
     CDS             complement(6858..6902)
                     /gene="trpL"
                     /locus_tag="OQP62_002281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_448140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon leader peptide"
                     /protein_id="HCS1721821.1"
                     /translation="MAATFALHGWWRTS"
     gene            7024..7905
                     /gene="yciV"
                     /locus_tag="OQP62_002282"
     CDS             7024..7905
                     /gene="yciV"
                     /locus_tag="OQP62_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exoribonuclease"
                     /protein_id="HCS1721822.1"
                     /translation="MGAALSDTNYAVIYDLHSHTTASDGLLTPETLVHRAVEMRVGTL
                     AITDHDTTAAIPAAREEISRCGLALNLIPGVEISTVWENHEIHIVGLNIDIAHPAMRD
                     FLAQQTHRRQARGRLIAERLEKAHIPGAWEGALRLANGGAVTRGHFARFLVECGKATT
                     MAEVFKKYLARGKTGYVPPQWCTIEQAIDVIHHSGGKAVLAHPGRYDLSAKWLKRLVA
                     HFADHHGDAMEVAQCQQSPNERTQLATLARQHHLWASLGSDFHQPCPWIELGRKLWLP
                     AGVEGVWQAWEQPQISQ"
     gene            7913..8533
                     /locus_tag="OQP62_002283"
     CDS             7913..8533
                     /locus_tag="OQP62_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HCS1721823.1"
                     /translation="MSQFFYIHPDNPQQRLINQAVDIVRKGGVIVYPTDSGYALGCKI
                     EDKGAMERICRIRHLPDGHNFTLMCRDLSELSTYSYVDNVAFRLMKNNTPGNYTFILK
                     GTKEVPRRLLQEKRKTIGLRVPSNPIALALLDTLGEPMLSTSLMLPGSDFTESDPEEI
                     KDRLEKQVDLIIHGGYLGQQPTTVIDLTNDSPVVLREGVGDVTPFL"
     gene            8634..9509
                     /gene="rluB"
                     /locus_tag="OQP62_002284"
     CDS             8634..9509
                     /gene="rluB"
                     /locus_tag="OQP62_002284"
                     /EC_number="5.4.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2605) synthase RluB"
                     /protein_id="HCS1721824.1"
                     /translation="MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIATLGDRVEV
                     TPGLKIRIDGHLISVKESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR
                     WIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDESKLRDLSRGV
                     QLEDGPAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI
                     PLPKGLPRGGWTELDLAQTNYLRGLVELPPETSSKVAVEKDRRRMKANQIRRAVKRHS
                     QIAGGRRSGGRNNNG"
     gene            complement(9596..10186)
                     /gene="cobO"
                     /locus_tag="OQP62_002285"
     CDS             complement(9596..10186)
                     /gene="cobO"
                     /locus_tag="OQP62_002285"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HCS1721825.1"
                     /translation="MSDERYQQRQQKVKDRVDARVAQAQEERGIIIVFTGNGKGKTTA
                     AFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADT
                     AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITG
                     RGCHRDILDFADTVSELRPVKHAFDAGVKAQMGIDY"
     gene            complement(10183..10944)
                     /locus_tag="OQP62_002286"
     CDS             complement(10183..10944)
                     /locus_tag="OQP62_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciK family oxidoreductase"
                     /protein_id="HCS1721826.1"
                     /translation="MHYQPKQDLLQNRIILVTGASDGIGREAALTYARYGATVILLGR
                     NEEKLRRVAQHIADEQHVQPQWFTLDLLTCTAEECRQVADRIAAHYPRLDGVLHNAGL
                     LGEIGPMSEQDPQIWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA
                     NWGAYATSKFATEGMMQVLADEYQNRSLRVNCINPGGTRTSMRASAFPTEDPQKLKTP
                     ADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGIAQ"
     gene            11182..12228
                     /gene="sohB"
                     /locus_tag="OQP62_002287"
     CDS             11182..12228
                     /gene="sohB"
                     /locus_tag="OQP62_002287"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HCS1721827.1"
                     /translation="MELLSEYGLFLAKIVTVVVAIAVIVLLIVNATQRKRQRGELRVT
                     NLSEQYQEMKDDLAAALMDGHQQKLWHKAQKKKHKQEAKAAKAKAKLGDIATSDKPRV
                     WVIDFKSSMDAHEVNALREEVTAVLAVAKPGDRAVVRLESPGGVVHGYGLAASQLQRL
                     RDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPNFNRFLKSKDI
                     DIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMRPALDIEQVATG
                     EHWYGQQALEKGLVDEINTSDEVILGLMEGREVLNVRYMQRKKLIDRVTGSAAESADR
                     LLLRWWQRGQKPLM"
     gene            complement(12270..12521)
                     /locus_tag="OQP62_002288"
     CDS             complement(12270..12521)
                     /locus_tag="OQP62_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciN family protein"
                     /protein_id="HCS1721828.1"
                     /translation="MHKETQPIDRETLLLEANKIIREHEDTMAGIVATGVTQRNGVLV
                     FSGDYFLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD"
     gene            12924..15521
                     /gene="topA"
                     /locus_tag="OQP62_002289"
     CDS             12924..15521
                     /gene="topA"
                     /locus_tag="OQP62_002289"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HCS1721829.1"
                     /translation="MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAA
                     KKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWDAHYEVLPGKEKVVSELKQLAEK
                     ADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQAFEQPGELNIN
                     RVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEE
                     FWEIDANTTTPSGEALPLQVTHQNDKPFRPVNREQTLAAVSLLEKARYSVLEREDKPT
                     SSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNM
                     VRGYIGDNFGKKYLPDNPNQYASKENSQEAHEAIRPSDVAVMAESLKDMEADAQKLYQ
                     LIWRQFVACQMTPAQYDSTTLTVGAGEFRLKARGRILRFDGWTKVMPALRKGDEDRTL
                     PAVNKGDALTLLELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRG
                     YVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMEDSLDQVANHQAEWKAVLDN
                     FFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCPTCGRKMGIRTASTGVFLGCSGYAL
                     SPKERCKTTINLVPENEVLNVLEGDDAETNALRAKRRCQKCGTAMDSYLIDPKRKLHV
                     CGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNDECKNTR
                     KILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGIFLAANTFPKSRETRAPLVE
                     ELYRFRDRLPEKLRYLADAPQQDPEGNKTVVRFSRKTKQQYVAAEKDGKATGWSAFFV
                     DGKWVEGKK"
BASE COUNT         3614 a         4192 c         4467 g         3541 t
ORIGIN      
        1 cgttaatgca ttgtttgttg acatttcttt acataaaggc gggggaaatt gacgtgaaaa
       61 cgctaaattt ttcggcgtga ttaggagttt tcttagcaaa aattgacttc agactttttg
      121 aaagctggac ggggaataac accaaaaaga ttgatgatgt acgcctgaat cgtgattctg
      181 gtttggcgcc aacctctcat taagccgcca gcgttatgct gacggcttaa cccgttatgc
      241 gcggctggcg gctttcatcg ctgagacaaa ggacctgagc tccgccaaca tctgttcggg
      301 agacgcgagg tttttctcga taatcttgac aatggctgag ccggagatag cgccagccgc
      361 cccggcacgc acggccgcag acacctgttc cggcgaggag ataccgaagc cctgtaacgc
      421 aggcgcggcg tggtactctt taagcttctc aatgagatga tgcaacggca atgcgccacg
      481 gttttccgcg ccggtgacgc ccgaacgcga aagcaggtag gtataaccgc ggccgtaaga
      541 tgcgacctgg cgcagaagat cgtcatccgc atttggcggg cagatgaaga tcggcgcgat
      601 attatgccgt aacgccgcct ggcggaaggg ggccgattct tcaaccggga catctgcgac
      661 cagcacggaa tctacgccaa cctgttcaca acgggcatag aacgcatcta tgccgttatt
      721 gaacaccaga ttcgcgtaca ttagcaggcc aatcggaatg gtcgggtgtt tttcacgaat
      781 cagcgccagc atttcaaaac actgagctgg cgtgacgcca gcggcgaagg cgcgtaagtt
      841 cgcattctgg atggtagggc catcggccag aggatcggag aagggaaccc ccagctccag
      901 agcgtcggcg ccagcgtcaa tcagtgtgtc aataattttc agtgactgtt caatgccagg
      961 gtcgcccagg gtcacgaagg ggacaaaagc gccttcccgg cgatcgttga gttgggcaaa
     1021 taaattttcg tagcgttcca tcagatttcc cctcgcgctt tcaggatatc gtgtacggta
     1081 aagatgtctt tatctccgcg gccagagaga ttgaccacca gcagttgctc tttttccggc
     1141 tgctcgcgca tcattttcag agcgtgcgcc aacgcgtggg aggactccag cgccgggata
     1201 attccctcat ggcggcacaa cgttttgaag gcttccagcg cctcatcatc ggtaatggag
     1261 acataatccg cgcgtccgat gctgttcagg tacgcatgtt gcggcccaac ggacgggaaa
     1321 tcgagtccgg cggaaatgga ataggactct tcaatttgcc cgtctgctgt ttgcatcatc
     1381 ggcgctttca tcccgaaata gatgccaacg cgaccatgtt taagcggcgc accatgctcg
     1441 ccggtttcaa taccgtgacc gccaggttca acgcctatta gcccgacgct ggtatcatta
     1501 ataaaatccg caaacatccc gatagcgttt gagccgccac cgacgcaagc gataacggca
     1561 tctggcagac ggccctcttt gtcgaggatt tgcgctttcg tctcttcgcc aatcatgcgt
     1621 tggaactcgc gaacgatggt aggataggga tgcggtcctg ccgccgtgcc gagcatatag
     1681 tgcgcggttt cgtaactacc ggaccagtcg cgcagcgcct cgttacaggc atcttttagc
     1741 gtagcggagc cgctatgaac cgggatgacc tcagcgccca tcagacgcat acggaagacg
     1801 ttcggcgact ggcgctcaac gtctttggca cccatataga tacggcattt cagacccagc
     1861 agggcgctgg cgagcgcaga ggcgacgccg tgctgaccgg cgccggtttc agcgataatc
     1921 tcgcttttac ccatccgttt ggccagcagc gcctgaccca gtacctgatt ggttttgtgt
     1981 gcgccgccgt gcagtaaatc ttcgcgcttt aaatacaacg tggtacgcgt accggcggta
     2041 atgttctggc atttcgtcag cgcggtgggg cgtcccgcgt agttttttag cagatcggcg
     2101 aattgcgcct gaaattcagg atctttttgc gcgctgacga aggcctcttc aagctggttc
     2161 agcgcaggca tcaggatctg cggcacatac atgccgccga attcaccaaa gtaggggttg
     2221 agaagtgttg tcatgttttt tccttaatat gcgcgcagtg tctgaaaaac cgaggccaga
     2281 agacgagcat ctttgatgcc cggctgtgac tccacacctg aattaaaatc gagaccggca
     2341 cagccgactt gcgccgcctg gacgcagtta tcggccgcca gcccgcccgc cagtaacaca
     2401 tcatccagcg gttgcccctg tagcagtgac cagtcgaagc gctgcccgct gccgccttgc
     2461 ccattgtcga aaatgtattt atcgacatgg tgataatcgc gtgcgggaag ggcattgcta
     2521 acgctcagcg ccttccagat ttgcacattg cgcggcaacg cctcgcgcag cgcgttgaca
     2581 tacgcctggt cttcgctgcc atgtagctgt acggcagaaa gcgacaggac ggcggctttc
     2641 tggcaaacat cggcgatatc agcgttcttg aaaacgccga catactgcaa tggcgcgccg
     2701 cttatcactt ctcgcgcctg ctcaacgcta accgcgcgcg gagatgaggg cacaaaaatc
     2761 aacccgccat atattgcgcc agcgtcacag gccgctttag cgtcctgggc gcgggtcagg
     2821 ccgcagactt tattttcgcc aagcagcacg cgacggacgg cggcgttaag atcgtcatgc
     2881 gccattaacg cggagccaat taaaaaaccg ttggcgaagt ggctcagttc gcgtacctga
     2941 ccataggtgt taatcccgga ctcgctgatg acagtcacgc cgtggcccag ttttggcgcc
     3001 agctggcggg tgcgattcaa atcaatcgac agatcgcgca gatcgcgatt gttgatacct
     3061 accacttttg cgcctaacgc tatcgcgcgc tcccgttctt cgtcattact gatctccgtg
     3121 agcacgccca ttttcagact gtgcgcgacg gcggagagtt ggcgatactg ttcgtcatcc
     3181 agaaccgaga gcatcagtaa acaggcatcg gcctgatagt aacgggcaag gtagatctga
     3241 tagggatcga taataaaatc cttacacaga atcggctgcg gcgcgctttg gctaacgacc
     3301 ggcagaaaat cgaagctccc ctgaaaatat ttttcgtcgg tgagcaccga gatcgccgag
     3361 gcgtaatgtt gataaatact ggcaatacgc gccggatcga aatcgtcgcg aatcacgcct
     3421 tttgatggcg atgctttctt acactccaga ataaaggcgg tacgcgcgcc ctggagcgca
     3481 tcataaaaat ggcgtgtact tggctggatc tcattttgaa aactggccag cggctgttgc
     3541 tgtttgcggg cttctacaca aatcgccttg tctgcgacga ttttcgctaa aacggtttgc
     3601 attatttacc ctcttgccgc cagtgcggtg actctgtcat atgcggtgcc gttgcgcaga
     3661 acatcaagca cggtttgcgc gttggccttg agatcttcct gaccatgcag acgcatcagc
     3721 atcgccacgt tggcggcgac ggcggcctca tgcgcggcat cgcctttacc ttgtaataac
     3781 cgcgtcagaa tgtcacggtt ttcttccggc gtgccgccag ccaactgatc ctgatggtaa
     3841 ggcgtcaggc caaaatcctc cgccgtaagt tgatagcttt taatttcgcc gtcatgcagc
     3901 tccgcgacaa tcgtcggcgc atggagcgaa acctcatcca tgccgccgct atgtaccacc
     3961 gccgcgcgct gatagcccag tacccgtaag gtttccgcaa tcggcagcac cagttccggg
     4021 ctatagacgc caatcaatgc cagcggcgga tgcgctgggt tgatcagcgg gccgagtacg
     4081 ttgaacaggg ttcgcgtttt taactgttgg cgaaccggca tcgcgtgacg gaatccggtg
     4141 tgatatttcg gcgcgaacag gaaacagacg cccagttcat ctaacgcctg acgtgattta
     4201 tcggcgttca tatccagatt aataccgaac gccgccaaca gatcggatga ccccgatttg
     4261 ctggatacgc tgcggttgcc gtgtttcgcc actttcagtc cacaggccgc cgcgacaaag
     4321 gcgctggcgg tagagatatt gatactgtta ctgccatcgc cgccggtacc aacgatatcc
     4381 gcaaacagat agtccgggcg cgggaacggg gcggcatttt ccagcaacgc agtggcggcg
     4441 ccggcaattt cattgggatg ctcgccgcga attttcatgc tcaccagcgc ggcggcgagc
     4501 tgttcaggct taagttcgcc gcggacgacc gccgaaaaca actgatggct ctcttgttgc
     4561 gtcagagttt gcgcctgata gagtttctcc agaattggct gtagggtgtt ggtcggttcc
     4621 agcttttgct gcgcccaggc taatgtttgc tccagtagac gcgcgccctg tgtcgtcagg
     4681 atggactcag gatgaaattg aaaaccgcaa acgcgatccg catcatgacg taccgccatc
     4741 accatgccgt tgaaatgggc gttaatggtt agcccggcag gaacattact gccgaccagc
     4801 gaatgataac gcgcgaccgg tagcggattc gccagaccgg cgaacatcgc ctgaccgtca
     4861 tgttcaatgc tggaggcttt gccatgcagg atttctcccg cctgaccgac ataaccgccg
     4921 taagcttcga caatcgcctg atgccccaga caaatgccga tgatcggtaa cttgccgcgt
     4981 agtcgggtca gcagctccgg catacagcct gcctcgctgg gaatgcccgg accgggggag
     5041 agcattagca ccggattttt cattgtcgcc aggcgatcga taagcgtctg cgccggaata
     5101 tggttacggt aaatcaccac gttatgaccg ttggtccgta gctgatctgc caggttccag
     5161 gtaaacgagt cgatgttatc gagcagcaga atatcagcca tcagaaggtc tcctgtgcat
     5221 gatgcgcggt ggcgatagca cgcaatacgg cgcgcgcttt attacgggtt tcatcggctt
     5281 cagactgcgg aacagagtcc agcacgattc cggcgcccgc ctgtacggtg gcgataccgt
     5341 tctccaccag cgcggagcgg ataacaatac aggtgtccag atcgccgtgg gcggtgaagt
     5401 aaccgaccgc gccgccatag ctgccgcggc gctgtccttc cgcatcggca atcaactgca
     5461 tggcgcgtac tttcggcgcg ccgctcaggg tgcccatgtt catgcaggcg cgataggcgt
     5521 gcagcgcgtc gagatcgtga cgcagttcgc ccactacccg ggaaaccaga tgcatcacgt
     5581 acgaatagcg gtcaactttg gtcagatcgg caacgtagcg actgcccggc gtacagatgc
     5641 gcgccaggtc attgcgcgcc agatcgacca gcatcagatg ttcggaaagc tctttctggt
     5701 cggtacgcat gtccagctca atacggctgt cgagatctct gtccagcgta ccatcggcgc
     5761 ggcgaccgcg tggacgggta cccgcgatgg ggtaaatctc aatctgacgg ctggcggcgt
     5821 catatttcag cgagctttcc ggcgacgcgc cgaaaagcgt gaaatcatta tcctgcataa
     5881 agaacatata cgggctgggg ttgctctttt tcagcacgta gtaggcagcc aacggcgacg
     5941 ggcagggcag tgaaaagcgg cgcgacggca ccacctgaaa tatctcgccc gcgcggatgg
     6001 ctttttgcaa ctggcgtacc accgcgccga acgcgtcatc gctctgattg cattcacagc
     6061 gcatgtccgg caccggcgtc accggcaacg gcggcgcagg ctgggttaac tgttggctaa
     6121 ggtacgccag gcgggcgttg aggcgctgtt tttccaggtc gctggcggtg aacagactgg
     6181 cctgaatacg ggtgcttttt ttctgatgat ctatcaccat cagcgtttcc gctaaataaa
     6241 agcagtagtc cgggcagtta ttgccagcct caaggtgtgg cagcgcttca aagccagcga
     6301 ccaggtcgta ggcaaacaga ccgccgaaaa acatagcctc ccgctcttgc gtcggtatgt
     6361 tcaccactcc ctgtaacagg cggaacgcat caaataccga cagagagcat aaacgggcgt
     6421 cttcatctaa taatgggctg acgggcggaa agcgtagaat gcgaccggca ggcaggactt
     6481 cgttctccac gccagcgggc agggcggtat ccagtagcgg caataacgag gcgccattat
     6541 cagataacgc ctgaatagtg acagtgtcac ctaaagcggt aatgcgcagc gcgctatcta
     6601 ccagcagcag gctttttaaa tcgtctttac tgtcgatatc cgcggattcc agcagcagcg
     6661 ttgccgggcg atcgccgcag acctggtgaa aaagcgccgt tgggttttcc cggtaggcgg
     6721 catcgcaggt caatagttcg agcgtgggtt ttggtgtttg catggttatt ctcattattt
     6781 tgttcaaaaa aaagcccgct taacaggcgg gccgggtatc gtttggctga ttacagctgt
     6841 tcatacaccg cccgctatca ggaagtgcgc caccaaccgt gtaatgcaaa tgtcgctgcc
     6901 attttagata ccctcttcat gtgaactttc gtactagtta actggttcaa tggaataatg
     6961 tcaacaccta tttcagtata tttgccggaa ccgttatgat gtacatgaca tacctttatc
     7021 tctatgggag ccgccttgag cgacacgaat tacgcagtga tttacgatct gcacagtcat
     7081 accacggcgt ccgatggact gttgacgcca gaaacattag tacaccgtgc ggtagagatg
     7141 cgagtcggca cgctggcgat taccgatcat gacaccacag ctgcgattcc tgcggcaaga
     7201 gaagaaattt cacgttgcgg gctggccctg aatctgattc ccggcgtgga gatttcaacg
     7261 gtctgggaga atcatgagat tcacattgtg ggtctgaata ttgatattgc gcacccggca
     7321 atgcgcgatt ttctagcgca gcagacacat cggcgtcagg cgcgtggtcg gctcattgcg
     7381 gagcgtctgg aaaaagccca tattcccggc gcgtgggaag gggcattgag actggccaat
     7441 ggcggcgcgg tgacgcgcgg ccacttcgcc cgctttctgg tggagtgcgg caaagccacg
     7501 accatggcgg aggtttttaa aaaatatctc gcgcgtggga aaaccggtta cgttccgccg
     7561 cagtggtgta caatagaaca agctattgat gtcattcatc attctggcgg taaggcggtg
     7621 ttggcccacc cgggacgcta cgaccttagc gctaagtggc tgaaaagatt agtggcgcat
     7681 tttgccgacc atcacggcga cgcgatggaa gtggcgcagt gccaacaatc acccaatgaa
     7741 cgcacccaac tggcgacgct tgcgcgtcag catcatttat gggcatcgct tggatctgat
     7801 ttccatcagc cctgcccgtg gattgagttg gggcgtaaac tctggctgcc cgctggcgtt
     7861 gaaggcgtat ggcaggcatg ggaacagccg caaatatcac agtgagggaa gtatgagcca
     7921 gtttttttat atccatccgg ataacccaca gcaacggctg attaatcagg ccgtcgacat
     7981 tgtgcgtaaa ggcggtgtta ttgtttatcc aaccgattcc ggctatgccc ttggttgtaa
     8041 aattgaagac aaaggcgcaa tggagcgcat ttgccgcatc cgtcatctgc cggacggcca
     8101 caacttcacg ctgatgtgcc gcgatttgtc cgagttgtcg acctactcct acgtcgacaa
     8161 cgtggcattt cgtctgatga aaaacaatac gccgggtaat tacaccttta tcctgaaggg
     8221 gacaaaagag gtgccgcgcc gtctgttgca ggaaaagcgt aaaactatcg gcctgcgcgt
     8281 accgtcaaac ccgattgcgc tggcgttatt ggatacgctg ggcgaaccga tgctctcgac
     8341 gtcgttgatg ctgcctggca gcgattttac cgagtcggac ccggaggaga ttaaagatcg
     8401 gctggagaag caggtggatc tgatcatcca cggtggttac ctcggtcaac agcctaccac
     8461 ggtaatcgat ttgaccaatg actccccggt ggtgctgcgc gaaggcgtcg gcgacgttac
     8521 acctttctta taagggcgta agcctgtata ctacgcggcc ttaaaatggc gcggcaacgc
     8581 gccgttcatt ctcctgttcg acgcctgtga aggcgacacc tgaaggaagc tctatgagcg
     8641 aaaagttaca aaaagtgctg gcgcgcgctg gccacggctc tcgccgtgaa atcgaatcca
     8701 ttattgaagc gggacgtgtc agcgttgacg gtaaaatcgc cacgcttggc gatcgtgttg
     8761 aagtcactcc cggtttgaaa atccgtatcg acggtcacct gatttcggtg aaagagtcgg
     8821 cggaacaaat ttgccgcgtt ctggcctatt acaaaccaga aggtgaactg tgtacccgca
     8881 atgaccctga agggcggcca accgtttttg atcgcttacc gaaactgcgc ggcgcgcggt
     8941 ggattgcggt aggacgtctg gatgtcaaca cctgcgggct attgttgttt accaccgacg
     9001 gtgaactggc gaaccgcctg atgcatccta gtcgcgaagt tgaacgtgaa tatgccgtgc
     9061 gcgtgttcgg tcaggtggat gaatcgaaac tgcgtgattt aagccgtggc gtacagttgg
     9121 aagatggtcc ggcggcattt aagaccatta aattcagcgg cggcgaaggc attaaccagt
     9181 ggtataacgt gacgctgacg gaagggcgca accgcgaagt tcgccgactg tgggaagcgg
     9241 taggcgttca ggtcagccgt ctgatccgcg ttcgttacgg cgatatcccg ctgccgaaag
     9301 gcctgccgcg cggcggctgg actgagctcg acctcgcgca aacgaactat ctgcgtggtc
     9361 tggtagagct cccgccggaa acctcgtcga aggttgccgt cgaaaaagac cgtcgtcgta
     9421 tgaaagcgaa ccagatccgt cgggcggtaa aacgccacag ccagatagct ggcggacgcc
     9481 gctccggtgg gcgtaataac aacgggtaat ctctaccgtg gtttataggc cgagagtcat
     9541 cagacaagag ggtttgtgcc ggatggcggc gcaaacgcct taatccggcc tacggttaat
     9601 aatcaattcc catctgggct tttacgcccg cgtcgaaagc atgtttaacc ggacgcagtt
     9661 cgctgacggt atccgcaaaa tcaagaatat cccggtgaca gccgcgacct gtaataatca
     9721 ccgtctggtg accagggcgc gcgtttagcg cgcttatgac ctcttccagc ggtaaatagt
     9781 catacgccac catataggtc agctcatcca gcactaccat atcaagcagc ggatcggcca
     9841 gcattcgttt cccatgctgc caaacggcca tacatgctgc ggtgtctgcc tcgcgatttt
     9901 gcgtctccca ggtaaatccc gttgccatca cctgaaattc gacgccatgc ggttccagca
     9961 gattacgctc gccgttgggc caggtgcctt taataaattg caccacgcct acgtttttac
    10021 cgtgtcctac ggcgcgggcg gcagttccga aagccgccgt ggttttgccc ttaccattgc
    10081 cagtaaacac gataataata ccgcgctctt cctgtgcctg ggcgacacgg gcgtcaaccc
    10141 gatcttttac cttctgctgg cgctgctgat aacgttcatc actcattggg cgattcctgg
    10201 tttacggccc ggttgggcgt caaaggtcat accggtttta cggcgactgt cgtcgcccat
    10261 aagccacagg taaagcggca taatatcggc aggcgttttt aatttctgtg gatcttccgt
    10321 cggaaaggcg ctggcgcgca tactggtgcg cgtgccgccc gggttaatgc agttaacacg
    10381 cagagaacgg ttctggtatt cgtccgccag cacctgcatc attccttcag tagcaaactt
    10441 cgaggtggca taggcgcccc agttggcgcg tccctgacgg ccaacgcttg atgacgtaaa
    10501 gaccagcgag ccggcatcgg acttcaataa taacggtaac agcgcctggg tgagcataaa
    10561 ggtggcgtta acgtttacct gcatgacatc ctgccagatc tgcggatctt gttcgctcat
    10621 tgggccgatt tcccccagta acccggcatt gtgcaggacg ccatccaggc ggggatagtg
    10681 cgcggcgatg cggtcggcca cttgccggca ctcttcagcg gtgcaggtca gcagatcgag
    10741 cgtaaaccac tgtggttgaa catgttgctc gtcagcaatg tgctgcgcga cccgacgcag
    10801 tttctcttcg ttgcgtccca gcagaatcac cgttgcgccg taacgcgcat acgtgagcgc
    10861 ggcttcccgc ccaatgccat cgctggcacc agtgaccaga ataatgcggt tttgcaatag
    10921 atcttgtttc ggttggtaat gcatggctac tcctcaacgg tgtggtgcac cgtcctgcca
    10981 ggttgtctta tcttcgcgtt aacttttcgg gtttatgcct gaaagcgcct tttttttcaa
    11041 tcagacaggg gcgataacgc cgtaaaatga acgtcttgtc atactttttc ttcctcaaca
    11101 ggcatacgga tgaagagaga ctgacttcga tgcctgttgt acactgagcg caagtcgcgt
    11161 tatttaatca aggtgggagt cgtggaattg ttgtctgaat atggcttatt tttggcaaaa
    11221 atcgtcaccg ttgtggtggc cattgccgtc attgtgctgc tgatcgtgaa tgctacgcaa
    11281 cgcaaacgtc agcgcggcga gctgcgcgtg accaatttga gtgagcagta tcaggagatg
    11341 aaggatgacc ttgctgcggc gttgatggat ggccatcagc aaaaactgtg gcataaagcg
    11401 cagaaaaaaa agcataagca ggaggcgaaa gccgccaaag cgaaagcgaa gctgggggac
    11461 attgcgacat cggacaaacc gcgcgtatgg gtgatagatt tcaaaagcag tatggacgct
    11521 cacgaagtta atgcgttacg cgaagaggtc acggcggtgc tggcagtggc gaaacccggc
    11581 gatcgggcgg ttgtgcgtct ggaaagcccc ggtggcgttg tgcacggcta tggcctggcg
    11641 gcatcgcaat tgcagcgcct gcgcgataaa aatattccgc tgaccgtgac ggtggataaa
    11701 gtcgcggcaa gcggaggcta catgatggcc tgcgtggcgg aaaaaattat cgcggcgccg
    11761 ttcgctattg tggggtcaat tggtgttgtc gcgcaaatcc cgaactttaa ccgctttctc
    11821 aaaagtaaag acattgatat tgaactgcat accgcagggc agtacaaacg taccctgact
    11881 ttgttaggcg agaatacgga agaagggcgg cagaagtttc gtgaagatct caacgaaacg
    11941 caccatctgt tcaaagagtt tgtgcagcgg atgcgtccgg ctctggacat tgaacaggtc
    12001 gccacgggcg aacactggta cggtcagcag gcgctggaga agggactggt tgatgagatt
    12061 aacaccagcg atgaggttat cctcggcctg atggaagggc gcgaggtgct gaatgtgcgc
    12121 tatatgcagc gtaaaaaact gatcgatcgt gttaccggca gcgcggcgga aagcgcggat
    12181 cggctgctgc tgcgctggtg gcagcgtgga caaaagccgt tgatgtaaac cgctattgcc
    12241 ggatggcatt cagcgccatc cggcatggat taatcaacca ggtgatactt ctcagacagc
    12301 acatgcgcca ggtgtttaaa catgttaaac accgcggtgc ttttaggggt cggtaaccct
    12361 tgctcgtcta aaaagtaatc gccgctgaaa accagcacgc catttctctg cgttacgccg
    12421 gtggcgacaa tacctgccat cgtgtcttca tgttcccgaa taattttgtt ggcttcaagc
    12481 aacagtgttt cgcgatcgat aggttgcgtc tctttatgca ttttttactc cttaaacaag
    12541 gagattagtc tacgctgagc acttctgatg ggcaaatatt ctcacaggaa attgatggat
    12601 ttgtcatgtt gcgttcactg gcaagatttg tttttgcatg ctaataaagt tgcgtatcga
    12661 attttatcag gtacagtgtg acgctttcgt caatctggca acagaattgc ttgacattcg
    12721 accaaaattc cgtcgtgcta tagcgcgtgt gtgcaaaaaa gcctgttaac tcagtcacct
    12781 gagggttaca tttcgtacac aaagccagta caaggggttg atatccgcag acgcagagac
    12841 catatatcgt tgtctcgtcg ccagtggaag gtgaatcaac gtgcgacgca ttcctggaag
    12901 aatcaactta ggtaaaggtg aatatgggta aagctcttgt catcgttgag tccccggcaa
    12961 aagccaaaac gatcaacaag tatctgggta atgactacgt ggtgaaatcc agcgtgggtc
    13021 atatccgtga tttgccgacc agtggctcag cagctaaaaa gagcgccgac tctacctcca
    13081 ccaaaacggc taaaaagccc aaaaaggatg aacgtggcgc tctcgtcaac cgtatggggg
    13141 ttgacccgtg gcacaactgg gatgcgcact atgaagtgct gcccggtaaa gagaaggtcg
    13201 tctctgaact gaaacagttg gcggaaaaag ccgaccacat ctatctcgca accgaccttg
    13261 accgcgaagg ggaagccatt gcatggcacc tgcgggaagt gatcggcggc gatgacgcgc
    13321 gctacagtcg cgtagtcttt aacgaaataa ccaaaaatgc cattcgccag gcgtttgaac
    13381 agccgggcga gctgaacatt aacagggtca acgcccagca agcgcgccgc tttatggacc
    13441 gcgtggtagg ctatatggtc tcgccgctgc tgtggaaaaa gatcgcccgt ggtttgtcgg
    13501 caggtcgcgt tcagtctgtc gcggtccgtc tggtcgttga gcgcgagcgc gagattaaag
    13561 cgtttgttcc ggaagagttc tgggagattg acgctaatac gacgacgccg tctggcgagg
    13621 cactaccgct acaggtcacg catcagaacg acaagccatt ccggccggta aatcgcgagc
    13681 agacgcttgc cgccgtcagc ttgttggaaa aagcgcgcta tagcgtactg gagcgtgaag
    13741 acaaaccgac cagcagcaaa cctggcgcgc cgtttatcac ctccacgcta caacaggcgg
    13801 ccagcacccg gctgggcttt ggcgtgaaga aaaccatgat gatggcgcag cgtctgtatg
    13861 aggcgggcta catcacctat atgcgtaccg actccaccaa cctgagtcag gatgcggtca
    13921 acatggtgcg cggctatatt ggcgataatt tcggcaagaa atacctgccg gataacccga
    13981 accaatacgc cagcaaagaa aactctcagg aagcgcacga agcgatccgt ccttccgacg
    14041 ttgctgtcat ggcggagtcg ctgaaagaca tggaggctga cgcgcagaag ttgtatcagc
    14101 taatttggcg tcagtttgtc gcctgtcaga tgacgccagc acaatatgac tccactacgc
    14161 ttaccgttgg cgcaggcgaa ttccgtctga aagcgcgtgg gcgtattttg cgctttgacg
    14221 gctggacaaa agtgatgccg gcgctgcgta aaggcgatga agatcgcaca ttgcctgccg
    14281 tgaataaggg cgatgcgctg acgctacttg aattgacgcc tgctcagcac tttactaaac
    14341 cgccagcccg tttcagcgag gcttctctgg ttaaagagct tgagaagcgc ggtattggtc
    14401 gtccgtctac ctatgcgtcg attatctcga ccattcagga tcgcggctat gttcgcgttg
    14461 aaaaccgtcg cttctatgcg gaaaaaatgg gtgaaatcgt caccgaccgg ctggaagaaa
    14521 acttccgcga attgatgaac tacgatttta ccgcgcagat ggaagatagt ctggatcagg
    14581 ttgcgaatca ccaggccgag tggaaagcgg tgctggataa cttcttcagc gattttactc
    14641 agcagctcga taaagccgag aaagatccgg aagaaggggg gatgcgtcct aaccagatgg
    14701 tgctgaccag catcgactgt ccaacctgtg gccgtaaaat gggaattcgt actgccagta
    14761 cgggggtttt ccttggttgt tcaggttatg cgctttcgcc gaaagagcgt tgtaaaacga
    14821 ccattaacct ggtgccggaa aatgaagttc tgaacgtgct ggaaggcgac gacgccgaaa
    14881 ccaacgccct gcgcgccaaa cgtcgctgtc agaagtgcgg tacggcgatg gacagctatc
    14941 tgatcgatcc gaagcgtaaa ttgcatgtgt gtggtaataa cccgacctgt gacggctacg
    15001 agattgaaga aggcgagttc cgcatcaaag ggtatgacgg cccgatcgtt gagtgtgaga
    15061 aatgtggttc cgaaatgcac ctgaaaatgg ggcgttttgg taagtacatg gcctgtacta
    15121 acgacgaatg taaaaatacc cgtaagatct tgcgtaacgg cgaagttgcg ccgccgaagg
    15181 aagatcctgt tccattgccg gaactgccgt gtgaaaaatc ggacgcgtac tttgtgctgc
    15241 gcgatggcgc cgcagggata ttcctggcgg ccaatacgtt cccgaaatca cgtgaaacgc
    15301 gcgcgccatt agtcgaggag ctttaccggt tccgcgatcg cctgccggaa aaactgcgtt
    15361 atctggcgga tgcgccgcag caggatccag aaggcaataa aaccgttgtt cgctttagcc
    15421 gcaaaacaaa acagcagtac gttgcggcgg aaaaagacgg gaaggcgacg ggatggtcag
    15481 cgttcttcgt cgacggcaag tgggttgaag gtaagaaata accccggcct gtcgccactg
    15541 tagtcaagcg ggccgcgtaa gcggcccttt tttatatccc cttcatattt caagtggctt
    15601 atgtgttggc tacggattac tcggcccatc tatgggcctc gccctgacgg gccgtcgcac
    15661 gcgacgttca aatctgctcc cggctgattt gtcgctcacc ccagtcccct ggttatctat
    15721 gctccaggga actcactcgc ttgttgcctt taatcactcg aattattttg ggtatagcgg
    15781 gcttattatt ttatcgcgct ggctatacag ttca
//
LOCUS       DAJVSD010000090        15292 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.090, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000090 DAJVSD010000000
VERSION     DAJVSD010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 15292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15292
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.090"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..676
                     /locus_tag="OQP62_002290"
     CDS             <1..676
                     /locus_tag="OQP62_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HCS1721830.1"
                     /translation="IALIDVGWMGNIQSVFARSLGAQWAEKQIHGFYLATFAGANDNR
                     SIYNKMFGYLTNYGHPHDKCDLFLSGGVEIMEFAMADNTGSTIGYKKTDNGIIPVRED
                     SSGSEIEYLKKAARLQSGIISFFEYVKPLIQKGNYAALSSVVLSEPFFELIARPSSAQ
                     LDALSSLTHSESAGSNAERIVLAKKLPLKDKLFPGENYIKELNASYWKEGFKRLNRKK
                     FWAKYN"
     gene            744..896
                     /locus_tag="OQP62_002291"
     CDS             744..896
                     /locus_tag="OQP62_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001528779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721831.1"
                     /translation="MPWRDHVNPDGEVVSCCDNVIITGYHRLFVHPLWIFIMAFDVHS
                     RQSEAG"
     gene            930..1721
                     /gene="nei"
                     /locus_tag="OQP62_002292"
     CDS             930..1721
                     /gene="nei"
                     /locus_tag="OQP62_002292"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease VIII"
                     /protein_id="HCS1721832.1"
                     /translation="MPEGPEIRRAADNLEAAIKGKPLTDVWFAFAQLKPYESQLTGQL
                     VTRIETRGKALLTHFSNGLTLYSHNQLYGVWRVIDTGEIPQTTRILRVRLQTADKIIL
                     LYSASDIEMLTAEQLMTHPFLQRVGPDVLDARLTPEEVKARLLSPRFRNRQFSGLLLD
                     QSFLAGLGNYLRVEILWQVGLTGQHKAKDLNEAQLNALSHALLDIPRLSYTTRGQADE
                     NKHHGALFRFKVFHRDGEACERCGGIIEKTTLSSRPFYWCAHCQK"
     gene            complement(1776..2822)
                     /locus_tag="OQP62_002293"
     CDS             complement(1776..2822)
                     /locus_tag="OQP62_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB family transcriptional regulator"
                     /protein_id="HCS1721833.1"
                     /translation="MPILQWFLLFLLSLLISLIFLYLHLPAAMLLGPMIAGIVLSLRG
                     STLQLPRGIFLAAQAILGCMIAQNLTGSILTTLALYWPVVLFVLLVTLLSSAVVGWLL
                     VRYSSLPGNTGAWGSSPGGAAAMVAMAQDYGADIRLVAFMQYLRVLFVAGAAVLVTRL
                     ILGDSAATVSQQVVWFPPLSGNLLTTLLLAIVAGIAGRLMRIPSGTMLLPMLAGALLH
                     SQGIIEIELPEWLLAVAYMAIGWRIGLGFDRQVFFMALRPLPQILLSIFALMAICAAM
                     AWGMAYYMQIDFMTAYLATSPGGLDTVAAIAAGSSADMALIMAMQTLRLFSILLTGPA
                     VARFISTYAPKQPL"
     gene            complement(2959..4242)
                     /locus_tag="OQP62_002294"
     CDS             complement(2959..4242)
                     /locus_tag="OQP62_002294"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HCS1721834.1"
                     /translation="MADTKAKITLTGDTAIELDVLKGTLGQDVIDIRSLGSKGVFTFD
                     PGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLYGEKPTQEEYD
                     EFRTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREI
                     AAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCETYEVNPVLER
                     AMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKML
                     EEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKD
                     DLLEVAMGLEHIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGW
                     IAHWNEMHTDGMKIARPRQLYTGYDKRDFKSALKR"
     gene            4343..4588
                     /locus_tag="OQP62_002295"
     CDS             4343..4588
                     /locus_tag="OQP62_002295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721835.1"
                     /translation="MHQSTVTSLLFGSPLCERGDDLGTEQWAFAGNGLINFELAANQE
                     RSNPSNVTCLSLITVLKEWVNIIVLLHNLLTGERVTP"
     gene            4982..5386
                     /gene="sdhC"
                     /locus_tag="OQP62_002296"
                     /gene_synonym="cybA"
                     /gene_synonym="dhsC"
     CDS             4982..5386
                     /gene="sdhC"
                     /locus_tag="OQP62_002296"
                     /gene_synonym="cybA"
                     /gene_synonym="dhsC"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000263334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase cytochrome b556 subunit"
                     /protein_id="HCS1721836.1"
                     /translation="MWALFMIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFI
                     AVGILLWLLGTSLSSPEGFQQAADIMDGFIVKFIMWGILTALAYHVIVGIRHMLMDFG
                     YLEETFEAGQRSAKISFVITVVLSLLAGVLVW"
     gene            5380..5727
                     /gene="sdhD"
                     /locus_tag="OQP62_002297"
                     /gene_synonym="cybS"
                     /gene_synonym="dhsD"
     CDS             5380..5727
                     /gene="sdhD"
                     /locus_tag="OQP62_002297"
                     /gene_synonym="cybS"
                     /gene_synonym="dhsD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017455938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase membrane anchor subunit"
                     /protein_id="HCS1721837.1"
                     /translation="MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELT
                     FEAWTGFFSSAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLAVRLILQLVIVVALV
                     VYVIYGFVVVWGV"
     gene            5727..7493
                     /gene="sdhA"
                     /locus_tag="OQP62_002298"
     CDS             5727..7493
                     /gene="sdhA"
                     /locus_tag="OQP62_002298"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HCS1721838.1"
                     /translation="MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS
                     HTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHM
                     GLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI
                     FSEWYALDLVKNQDGAVVGCTALCIETCEVVYFKARATVLATGGAGRIYQSTTNAHIN
                     TGDGVGMALRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMECY
                     APNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELS
                     RTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEQGEDVVIPGLFAVGEIACV
                     SVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGVLRDASESDVEGSLDRLNRWNNN
                     RNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNT
                     QRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPERDDANWLCHTLYQPQTESM
                     TRRSVNMEPKLRPAFPPKIRTY"
     gene            7510..8226
                     /gene="sdhB"
                     /locus_tag="OQP62_002299"
     CDS             7510..8226
                     /gene="sdhB"
                     /locus_tag="OQP62_002299"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit
                     SdhB"
                     /protein_id="HCS1721839.1"
                     /translation="MKLEFSIYRYNPDVDNAPRMQDYTLEGEEGRDMMLLDALIQLKE
                     KDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALTQSGKKIVIRPLPGLPVIRD
                     LVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCP
                     SFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLEGMSDAFSVFRCHSIMNCVSVCPK
                     GLNPTRAIGHIKSMLLQRSA"
     gene            8752..11553
                     /gene="sucA"
                     /locus_tag="OQP62_002300"
     CDS             8752..11553
                     /gene="sucA"
                     /locus_tag="OQP62_002300"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HCS1721840.1"
                     /translation="MQNSALKAWLDSSYLSGSNQSWIEQLYEDFLTDPDSVDANWRLT
                     FQQLPGTGVKPDQLHSKTREYFRRQALAGSRHSSTISDPDTNVKQVKVLQLINAYRFR
                     GHQHANLDPLGLWKQERVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLDAL
                     KQTYCGPIGAEYMHITSTEEKRWIQQRIESGRAAFSADEKKRFLNELTAAEGLERYLG
                     AKFPGAKRFSLEGGDALIPMLKEMVRHAGNSGTREVVLGMAHRGRLNVLINVLGKKPQ
                     DLFDEFAGKHKEHLGTGDVKYHMGFSSDIETEGGLVHLALAFNPSHLEIVSPVVMGSV
                     RARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQV
                     GFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFI
                     DLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEADKVATLEDATEMVNL
                     YRDALDAGECVVKEWRPMNMHSFTWSPYLNHEWDEAYPNKVEMKRLQELAKRISTVPE
                     AIEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFF
                     HRHAVIHNQTNGSTYTPLQHIHSGQGQFKVWDSVLSEEAVLAFEYGYATAEPRTLTIW
                     EAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQL
                     CAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSTLDELANGS
                     FQPAIGEIDELDPKAVKRVVMCSGKVYYDLLEQRRKNDQKDVAIVRIEQLYPFPHKAV
                     QEALQPYAHVHDFVWCQEEPLNQGAWYCSQHHFREVIPFGAALRYAGRPASASPAVGY
                     MSVHQKQQQDLVNDALNVD"
     gene            11568..12776
                     /gene="odhB"
                     /locus_tag="OQP62_002301"
     CDS             11568..12776
                     /gene="odhB"
                     /locus_tag="OQP62_002301"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HCS1721841.1"
                     /translation="MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDK
                     VVLEVPASADGILDAVLEEEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQ
                     QASLEEQNNDALSPAIRRLLAEHNLEASAIKGTGVGGRLTREDVEKHLAKGESKAPAV
                     EPAAQPALGARGEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYG
                     EVFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGL
                     VTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPI
                     INPPQSAILGMHAIKDRPMAVDGKVEILPMMYLALSYDHRLIDGRESVGFLVTIKELL
                     EDPTRLLLDV"
     gene            12918..14084
                     /gene="sucC"
                     /locus_tag="OQP62_002302"
     CDS             12918..14084
                     /gene="sucC"
                     /locus_tag="OQP62_002302"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HCS1721842.1"
                     /translation="MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWV
                     VKCQVHAGGRGKAGGVKVVKSKEEIRAFAENWLGKRLVTYQTDANGQPVNQILVEAAT
                     DIGKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQG
                     RELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGA
                     DGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIV
                     KLHGGEPANFLDVGGGATKERVTEAFKIILSDDNVKAVLVNIFGGIVRCDLIADGIIG
                     AVEEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKSLTDAAQQVVAAVEGK"
     gene            14084..14953
                     /gene="sucD"
                     /locus_tag="OQP62_002303"
     CDS             14084..14953
                     /gene="sucD"
                     /locus_tag="OQP62_002303"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HCS1721843.1"
                     /translation="MSVLINKDTNVICQGFTGSQGTFHSEQAIAYGTQMVGGVTPGKG
                     GTTHLGLPVFNTVREAVEATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPT
                     LDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIMPGHIHKPGKVGIVSRSGTLTYE
                     AVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILKLFQEDPQTEAIVMIGEIGGSAEEEA
                     AAYIKDHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRS
                     LADIGEALKAIIK"
BASE COUNT         3715 a         3848 c         4270 g         3459 t
ORIGIN      
        1 tatagcactt atcgatgtag gatggatggg taatattcaa tcagtatttg ctcgttcttt
       61 aggtgcgcaa tgggcagaaa aacaaataca tgggttttat ttggcaactt ttgctggcgc
      121 caatgataac cgatctattt ataataagat gtttggttat ctaaccaact atggccatcc
      181 ccacgataag tgtgatcttt tcttatcagg aggggtggaa ataatggagt tcgctatggc
      241 tgataatact gggtcaacaa ttggctataa aaaaacggat aatggaataa ttcctgtacg
      301 tgaagatagc agtggttctg aaattgagta tttaaaaaaa gcggcaagat tgcaatcagg
      361 gattatttct ttttttgagt acgtcaaacc gctcatacaa aaaggaaatt atgcagcact
      421 tagtagtgtt gtattgtcag aacctttttt tgaattgata gccagaccct caagcgctca
      481 actggacgcc ttatcttccc tcacacattc agagtccgcg ggatctaacg cagaaagaat
      541 cgtgctagcc aaaaaactgc ctttaaagga taaacttttt cccggagaaa attatatcaa
      601 agagttgaat gccagttatt ggaaagaagg ctttaaaagg ctcaacagaa aaaaattttg
      661 ggcaaaatat aactaagcgt catttaattt cggtaggcag acaatcatta ttaggcgctc
      721 gcccgacaag ggctgagtcg attatgccct ggcgcgatca cgttaaccct gacggggaag
      781 tggtctcgtg ctgcgataat gttattatca ctggatacca ccgcctgttt gtccatccgc
      841 tgtggatatt cattatggcg ttcgatgtgc attccagaca gtcagaggcg gggtagtcca
      901 ttaatcaact gttaacaaag gatattatca tgcctgaagg cccggaaatt cgtcgtgcgg
      961 cggataatct ggaggcggca atcaaaggca aacccttaac cgatgtctgg tttgcctttg
     1021 cacagttaaa accgtatgaa tcgcagctta ccggtcaact tgttacccgg atagagacgc
     1081 ggggaaaagc gttattgacc cacttttcaa atggcctgac gctctacagc cacaaccaac
     1141 tctatggcgt atggcgggtg atcgacaccg gtgaaatacc gcagaccacg cgtatattac
     1201 gcgtcaggct acaaacggcg gataaaatta ttctgcttta tagcgcgtct gatatcgaaa
     1261 tgctgacagc agagcagctc atgacgcacc cttttttaca gcgagtcggt ccggatgtgt
     1321 tggacgcgcg tcttactccg gaagaggtta aagctcgatt gctgtcgccg cgttttcgca
     1381 accgacaatt ttccgggctg ttgctggatc agtcctttct ggcgggactg gggaattatc
     1441 tgcgcgttga aatcctctgg caggtaggat taaccggaca gcataaagcg aaagatctca
     1501 acgaggcgca actgaatgcg ctttctcacg cgctgttgga tattccgcgc ctttcctaca
     1561 cgactcgcgg tcaggcggat gagaacaagc atcatggcgc actgtttcgc tttaaggttt
     1621 tccaccgtga cggtgaagcg tgcgagcggt gcggcggcat tattgaaaag acaacacttt
     1681 cctcacgccc gttttactgg tgcgcgcatt gccagaaata gccggaaccg ccatcggcga
     1741 gcggctattg tctgatggcg cgacgcttat cagccctaca aaggttgttt gggcgcatag
     1801 gttgatataa aacgggccac tgctggccca gttaacagaa tgctgaacag ccgtagggtt
     1861 tgcattgcca tgatgagcgc catatcggca ctgcttcctg ccgcgatcgc ggcaaccgta
     1921 tccagacccc cgggactggt ggcgagataa gccgtcataa aatcaatctg catgtagtaa
     1981 gccattcccc acgccatcgc ggcgcaaatc gccatcagcg cgaaaattga caataagatt
     2041 tgcggcaatg gccgcagcgc cataaaaaac acctgtctgt caaaacccag cccaatacgc
     2101 cagcctatcg ccatatacgc cacggccagc agccattcgg gtaattcaat ttcaatgatg
     2161 ccttgcgaat ggagaagcgc gcctgccaac atggggagca gcatcgtgcc ggaagggata
     2221 cgcatcaggc gaccggcaat gcccgccacg atcgctaata gcagcgtcgt caataaatta
     2281 ccgctaagcg gcggaaacca gaccacctgt tggctgaccg ttgccgcgct gtcgccgagt
     2341 atcaggcgtg tcaccagcac cgccgcgcca gccacaaaca gtacccgtag atactgcata
     2401 aacgccacca ggcggatatc cgccccgtaa tcttgcgcca tcgctaccat tgccgccgcg
     2461 ccgcccggcg aagaccccca tgcgccggtg ttgccgggca gcgagctgta acgtaccagc
     2521 agccagccga ctaccgcgct ggaaagcagc gtcaccagca acacaaaaag cacgaccggc
     2581 cagtagaggg cgagggtggt caatatcgaa ccggttagat tttgggcgat catacagccg
     2641 agaatcgcct gcgcggcgag aaaaataccg cgaggaagtt gtagcgtgct acctcgcaaa
     2701 ctcaacacga tacccgcaat cattggacca agcagcatcg ccgccggaag gtgcagatag
     2761 agaaaaataa gggaaatgag cagcgataac aggaacaaca aaaaccactg caaaatcggc
     2821 attccatgct ccctgaatga tatttagcga aaccttaatt aatcatagag agtaacgggg
     2881 taagaataaa ataatgagga taagaaaaaa gggaaaatgt accggatggc gagggttgcg
     2941 tcgccatccg gttgtcaatt aacgcttcag cgccgattta aaatcgcgtt tatcgtagcc
     3001 ggtatacagc tgacgaggac gggcgatttt catgccgtca gtgtgcattt cattccagtg
     3061 tgcaatccag ccaacggtac gcgccatggc gaagatcacg gtgaacatag aggacggaat
     3121 gcccatcgct ttcagaatga tgccggagta gaagtctacg ttcgggtaca gtttcttctc
     3181 gatgaagtac gggtcgttga gcgcaatgtg ctcaagcccc atcgccactt ccagcagatc
     3241 gtctttggtg cccagctctt tcagcacttc gtggcaggtt tcacgcatca cggtggcgcg
     3301 cggatcgtag tttttgtaaa cacggtgacc gaagcccatc aggcggaaag aatcattctt
     3361 gtctttcgca cggcgaacaa attccggaat gtgtttaaca gagctgattt cttccagcat
     3421 tttcagcgcg gcttcgttgg cgccgccgtg cgcgggtccc cacagggagg cgatcccggc
     3481 ggcaatgcag gcgaacgggt tggcgccgct tgaacctgcg gtacgtaccg ttgacgtaga
     3541 ggcgttctgc tcatggtcag cgtgcaggat cagaatacgg tccatcgcgc gctccagtac
     3601 cggattcact tcataggttt cacacggcgt ggagaacatc atgttcagga agttaccggc
     3661 gtaggaaagg tcgttgcgcg gataaacaaa cggctgaccg attgaatatt tgtaacacat
     3721 cgccgccatg gtcggcattt tggacagcag gcggaacgcc gcgatttcac ggtggcgcgg
     3781 attgttcaca tccagcgagt cgtggtagaa cgccgccagc gcgccagtga tcccgcacat
     3841 taccgccatc ggatgtgagt cgcgacggaa agcatggaac aggcgagtga tttgctcatg
     3901 gatcatcgta tggcgggtga ctgtcgttct gaactcgtca tactcttcct gcgtcggttt
     3961 ttcgccgtac agcaggatgt aacagacttc cagatagttg gaatcggtag caagctggtc
     4021 aatcgggaaa ccgcgatgca acaaaatgcc ttcgtcgccg tcgatgaagg tgattttaga
     4081 ttcgcaggat gcggtagagg tgaaaccagg gtcaaaagta aaaactcctt ttgaaccgag
     4141 actacgaata tcaataacat cttgaccgag tgtgcctttt agcacatcca gttcaatagc
     4201 agtgtcacca gtaagggtga tttttgcctt tgtatcagcc atttacggtc tccttagcgc
     4261 cttattgctt aagactgccg gaactcagac ttgccttctc cacgtcatct tcctcgtcgt
     4321 tagtgcaggg aaaattctgt gtatgcatca atcaaccgtt accagtttgt tatttggctc
     4381 gccgctctgt gaaagagggg atgacctggg tacagagcaa tgggcgtttg caggtaacgg
     4441 cttgattaat ttcgaattag cagcaaatca ggaacgtagc aatccgagta atgtaacctg
     4501 tctatcacta ataactgtcc tgaaagaatg ggtcaatatc attgtactgt tacataactt
     4561 attaacaggt gaaagagtga ccccataact tttacgcatt atatgctttt tctggtgttg
     4621 tttgtaacaa ttttgtttaa tgtttgtcaa atcagatgat tgaaaattaa aaaaatgttg
     4681 ttatcgtgac ctgtgtcact gttcaggata aaacccgaca aactatatgt aggttaattg
     4741 taatgatttt gtgaacgtcc tatactgccg ccaggtctcc ggaataccct gcaatcccga
     4801 gccacccagc gttgtaacgt gtcgttttag ctactggaag cagtgtttta catgacgcgc
     4861 agttatagaa aggacgctgt ctgacccgca cgcagaccgg aggaaggaaa tcccgtcgtc
     4921 tttctggcta caggtagatt cacctctgta accgaagtct taagggaata ataagaacag
     4981 catgtgggcg ttattcatga taagaaatgt gaaaaaacaa agacctgtca atctggatct
     5041 acaaacgatt cggttcccca tcacagcgat agcgtccatt ctccatcgcg tatccggtgt
     5101 gattactttc atcgccgtcg gcatactact gtggctactg ggcaccagcc tctcttctcc
     5161 ggaaggattc cagcaggccg ccgacatcat ggacggcttc atcgttaaat ttatcatgtg
     5221 gggcatcctt accgcgctgg cgtatcacgt catcgtggga attcgtcaca tgttaatgga
     5281 ttttggctat ctggaagaaa cattcgaagc gggtcaacgc tctgccaaaa tctcttttgt
     5341 tatcactgtc gtgctttcac ttctcgcagg agtcctcgta tggtaagcaa cgcctccgca
     5401 ttaggacgca atggcgtaca tgacttcatc ctggtccgtg ctaccgctat cgttctgacg
     5461 ttatacatca tctacatggt gggttttttc gccacgagcg gcgaactgac ctttgaagcc
     5521 tggaccggtt tcttctcatc ggccttcacc aaagtcttca ctctgctggc gcttttttcc
     5581 atcttaattc atgcctggat cggcatgtgg caggtgttaa ccgactacgt taaaccactg
     5641 gcagtgcgtc tgatactgca actcgttatt gttgttgcgc tggtggttta cgtcatctat
     5701 ggatttgttg tggtgtgggg tgtgtaatga aactgccagt cagagaattt gatgctgttg
     5761 tgattggtgc cggtggcgca ggtatgcgcg cggcgctgca aatttcccag agcggccaaa
     5821 cctgtgcgct gctctcgaaa gtcttcccga cccgttccca taccgtttcc gcgcagggcg
     5881 gtatcaccgt ggcgctcggc aatacccatg aagataactg ggaatggcac atgtacgaca
     5941 ccgtaaaagg gtcggactac attggtgacc aggatgccat cgaatatatg tgtaagaccg
     6001 gaccggaagc gattctggaa ctggagcaca tggggctacc gttctcccgt cttgatgatg
     6061 gacgtatcta tcagcgcccg ttcggcggcc agtcgaaaaa ctttggcggc gagcaggcgg
     6121 cacgtaccgc ggcggcggct gaccgtaccg gtcacgcctt gctacatacg ctgtatcaac
     6181 agaatttgaa aaaccacacc acgattttct ccgaatggta tgcgctggat ctggtgaaaa
     6241 accaggatgg cgcggtggtg gggtgtaccg cactgtgcat cgaaacctgt gaagtggtgt
     6301 acttcaaagc tcgcgcgacg gtgctggcga ccggcggcgc aggccgtatc taccagtcca
     6361 ccaccaacgc tcatatcaat accggtgacg gtgtcggtat ggcgctgcgt gccggtgtcc
     6421 cggtgcagga tatggaaatg tggcagttcc acccgaccgg catcgccggg gcgggcgtgc
     6481 tggtgacaga aggctgccgc ggcgaaggcg gttacctgct gaacaaacac ggcgagcgct
     6541 ttatggagtg ttatgcgccg aacgccaaag accttgcggg tcgtgacgtg gtggcgcgtt
     6601 ccatcatgat cgaaatccgt gaaggtcgcg gctgtgatgg tccgtggggg ccgcacgcta
     6661 aactgaaact ggatcatctg ggtaaagagg tgctggaatc tcgcctgccg ggtatcctgg
     6721 agctgtcccg cactttcgct cacgtcgatc cggtgaaaga gccgattccg gttatcccga
     6781 cctgccacta catgatgggc ggtattccga ctaaagtgac cggtcaggcg ctgaccgtga
     6841 acgagcaggg cgaagacgtg gtgattccgg ggctgtttgc ggtaggcgaa atcgcctgtg
     6901 tatcggttca cggcgccaac cgtctgggcg gtaactcact gctggatctg gtggtctttg
     6961 gccgcgcggc ggggctgcat ttacaggaat ccatcgccga gcagggcgtg ctgcgcgacg
     7021 ccagcgagtc tgacgttgaa ggttctctgg atcgcctgaa tcgctggaac aataaccgca
     7081 atggcgaaga tccggtggct atccgcaaag cattgcagga gtgtatgcag cataacttct
     7141 ccgtattccg tgaaggcgac gcgatggcga aagggcttga gcagttgaaa gtgatccgcg
     7201 agcgtctgaa aaacgcccgt ctggatgaca cgtccagcga gtttaatacc cagcgtgttg
     7261 agtgtctgga gctggataac ctgatggaaa ccgcctacgc cactgccgta tcagccaact
     7321 tccggacgga aagccgcggc gcgcatagcc gcttcgattt cccggagcgt gatgatgcca
     7381 actggttgtg tcataccctg tatcagccgc aaacggaatc catgacgcgc cgaagcgtca
     7441 atatggaacc gaaactgcgt ccggcgttcc cgccgaagat tcgtacttat taattgcgga
     7501 gacaggatga tgaaactcga attttcgatt tatcgttata acccggatgt cgataacgct
     7561 ccgcgtatgc aggattacac cctggaaggc gaagaagggc gcgacatgat gctgctggat
     7621 gcgttaatcc agcttaaaga aaaagatccc agcctttctt tccgccgttc ctgccgcgaa
     7681 ggtgtgtgtg gttctgatgg tttgaatatg aacggtaaga atggtctggc ctgtattact
     7741 cctatttcgg cgctgactca gtcgggtaag aagattgtga ttcgcccgct gcccggtttg
     7801 ccggtgatcc gcgatttggt ggtagacatg gggcaattct acgcacaata tgagaagatt
     7861 aagccttact tattgaataa tgggcaaaat ccaccggcac gtgagcattt acagatgccg
     7921 gagcagcgtg aaaaactcga tgggctgtat gaatgtattc tttgcgcctg ttgctcaaca
     7981 tcctgcccgt cattctggtg gaacccggat aagtttatcg gtccggcggg gctgctcgcg
     8041 gcgtatcgat tcctgatcga tagtcgtgat accgagactg acagtcgtct ggaagggatg
     8101 agcgatgcat tcagcgtatt ccgctgtcac agcattatga actgcgtcag tgtatgtcct
     8161 aagggactga acccgacgcg cgctatcggc catattaagt cgatgctgtt gcagcgtagc
     8221 gcgtaagtag ttgtagtggt tgccggatgg cgacgtaccg tcttatccgg cctacgggtt
     8281 acgtattctg taggcctgat aagccaggtg ccatcgggca atagaagtgc aggaaacctc
     8341 taaaaactgc catatgatta gtaataatcg agatgttcag agcgagacaa ggcgcggtct
     8401 gaacgaatct tcgggagcat agttaactat gtgaccggag tgagcgaagg ccgcaacgca
     8461 gtcgtagcct gaacagcgaa gattattaga cagtttttaa aggttcctta gcggacgcag
     8521 atgacacgac agtccgcaac aagtgaaccc cggcacgcat acagcgtatg cgtggttagt
     8581 atccacggcg aaatactcgt catagttcac gttgcatgtg cgttggctgc acttgctcac
     8641 cccagtcact tactggatgt aagctcccag ggattcgcaa gcttgccgcc ttcctgaaac
     8701 gtgacctatt tagagtatta aataagcaga aaagatgctt aagggatcac gatgcagaac
     8761 agcgctttga aagcctggtt ggactcttct tacctctctg gttcgaatca gagctggata
     8821 gaacagctct atgaagactt cttaaccgat cctgactcgg tagacgctaa ctggcgtttg
     8881 acgttccagc agttacctgg taccggagtc aaaccggatc aactccattc aaaaacacgt
     8941 gaatatttcc ggcggcaggc gttggctggc tcacgtcact cttctacgat ttccgaccct
     9001 gacaccaatg tgaagcaggt taaagtcctg cagcttatca acgcttatcg tttccgtggc
     9061 catcagcatg caaacctcga tccgctggga ctgtggaaac aagaacgcgt ggcggatctg
     9121 gacccttctt tccatgattt gaccgaggcc gatttccagg aaaccttcaa tgtcggctcc
     9181 tttgccagcg gcaaagagac gatgaagctg ggggagctgc tcgacgcgct caaacagacc
     9241 tactgcggcc cgattggcgc tgagtatatg cacatcacca gcaccgaaga gaaacgctgg
     9301 atccaacagc gcatcgaatc cggtcgtgcg gcctttagcg ctgacgagaa aaaacgcttc
     9361 ctgaacgaac tgaccgccgc tgaagggctg gaacgttatc tgggcgccaa attcccgggt
     9421 gcgaaacgtt tctcgctcga ggggggagat gcgctgatac ctatgctgaa agagatggtt
     9481 cgccatgcgg gtaacagcgg cactcgcgaa gtggtgctgg ggatggcgca ccgcggtcgt
     9541 ctgaacgtgc tgatcaacgt actgggtaaa aaaccgcagg atctgttcga cgagtttgcc
     9601 ggtaaacata aagaacatct gggtaccggc gacgtgaagt atcacatggg cttctcgtca
     9661 gatatcgaaa ctgaaggcgg tctggttcac ctggcgctgg cgtttaaccc atcgcatctg
     9721 gaaattgtga gcccggtggt gatgggctcc gtgcgcgccc gtctggaccg actggacgaa
     9781 ccgagcagta ataaagtgct gccgatcact attcacggcg acgccgcggt gaccggccag
     9841 ggcgtggttc aggaaaccct gaacatgtcg aaagcgcgcg gttacgaagt gggcggtacg
     9901 gtacgtatcg ttatcaacaa ccaggtgggc ttcactacct ctaacccact ggatgcgcgt
     9961 tcaacgcctt actgcaccga tatcggtaaa atggtccagg cgccgatttt ccacgtcaat
    10021 gcggacgatc cggaagccgt cgcttttgtg acccgtctgg cgctggactt ccgtaatacc
    10081 tttaaacgcg atgtgttcat cgatctggtg tgctaccgcc gtcacggcca caacgaagcc
    10141 gacgagccaa gcgcaaccca gccgctgatg taccagaaaa tcaaaaagca tccgacgccg
    10201 cgtaaaatct acgccgacaa gctggaagct gataaggtcg caacgctgga agatgccacc
    10261 gaaatggtca acctctatcg cgatgcgctg gatgcaggcg aatgcgtggt gaaagagtgg
    10321 cgtccgatga atatgcactc gttcacctgg tcgccgtatc taaaccacga atgggatgaa
    10381 gcatacccga acaaggtaga aatgaagcgt ctgcaggagc tggcaaaacg tatcagcacc
    10441 gtgccggaag ccattgaaat gcagtctcgc gtggcgaaaa tttatggcga ccgtcaggca
    10501 atggcggcag gcgagaaatt gtttgactgg ggcggcgcgg aaaatctggc ttacgccacg
    10561 ctggtcgatg aaggcattcc ggtgcgcctg tccggggaag actccggtcg cggcaccttc
    10621 ttccatcgtc atgcggtgat ccacaaccag acgaacggct caacgtatac gccgttgcag
    10681 catattcaca gcggtcaggg acagtttaaa gtctgggact ccgtgctgtc tgaagaagcg
    10741 gtactggctt ttgaatacgg ttatgccacg gcggaaccac gtaccctgac tatctgggaa
    10801 gcgcagtttg gcgattttgc caacggcgcg caggtagtga ttgaccagtt catctcctct
    10861 ggcgagcaga aatggggccg gatgtgcggt ctggtgatgc tgttgccgca cggctatgaa
    10921 gggcaggggc cggagcactc ctccgcgcgt ctggaacgtt atctgcaact ttgcgccgag
    10981 cagaatatgc aggtttgcgt accgtccact ccggcgcagg tctaccatat gctgcgccgt
    11041 caggcgctgc gcgggatgcg tcgtccgctg gtggtgatgt cgccgaaatc gctgctgcgt
    11101 cacccgctgg cggtttccac gcttgatgaa ctggcgaacg gttccttcca gccggccatt
    11161 ggcgaaattg acgagctgga ccctaaagcc gtaaaacgcg tggtaatgtg ttctggtaag
    11221 gtttattacg acctgctgga acaacgtcgc aaaaacgacc agaaagatgt cgctatcgtg
    11281 cgcatcgaac agctctatcc gttcccgcat aaagcggtgc aggaagcgct gcaaccatac
    11341 gctcacgtcc atgattttgt ctggtgccag gaagagccgc tcaaccaggg cgcatggtac
    11401 tgcagtcagc atcatttccg tgaagtgatt ccgtttgggg ccgctctgcg ttatgcaggt
    11461 cgcccggcct ccgcctctcc ggcggtaggg tatatgtccg ttcaccagaa acagcaacaa
    11521 gatctggtta atgacgcgct gaacgtcgat taaataaagg ataaataatg agtagcgtag
    11581 atattcttgt tcccgacctg cctgagtccg tagcggacgc gaccgtcgcc acctggcata
    11641 aaaaaccggg cgatgcggtt gttcgtgacg aagtgctggt agaaatcgaa actgacaaag
    11701 tggtactgga agtaccggca tcagcggacg gcattctgga tgcggttctg gaagaagagg
    11761 ggacgactgt cacctctcgc cagatcctgg gtcgcctgcg tgaaggcaac agcgcgggta
    11821 aagagaccag cgcgaaatct gaagagaaag cgtctacgcc ggcacagcgc cagcaggcgt
    11881 cgctggaaga acaaaacaac gatgcgctca gcccggcgat ccgtcgcctg ctggctgaac
    11941 acaatctgga agccagcgcc attaaaggca ctggtgtggg tgggcgtctg acccgtgaag
    12001 atgtggaaaa acatctggcg aaaggcgagt ctaaagcacc cgctgttgaa cctgcagcac
    12061 aacccgctct gggcgcgcgc ggcgaaaaac gcgtgccaat gacccgcctg cgtaagcgcg
    12121 tggccgagcg tctgctggaa gcgaaaaatt ccaccgccat gctgacgacc ttcaatgaag
    12181 tcaacatgaa gccgattatg gatttgcgta agcagtatgg cgaagtgttt gaaaaacgtc
    12241 atggtatccg cctgggcttt atgtccttct acgtgaaagc ggtagtggaa gcgctgaagc
    12301 gttatccgga agtgaacgcc tctatcgacg gcgatgacgt ggtgtatcac aactactttg
    12361 atgtgagcat ggcggtgtct acgccgcgcg gcctggtcac gccggtcctg cgtgacgtgg
    12421 atacgctggg catggctgac atcgagaaaa aaattaaaga actggctgtc aaaggccgcg
    12481 acggcaagct gaccgtagaa gacctgaccg gcggtaactt taccattacc aacggcggcg
    12541 tattcggttc gctgatgtct accccgatca tcaacccgcc gcagagcgcg attctgggaa
    12601 tgcatgctat taaagacagg ccgatggcgg tggatggcaa ggtggaaatc ctgccgatga
    12661 tgtacctggc gctctcttac gatcatcgcc tgatcgatgg tcgcgaatcc gtgggcttcc
    12721 tggtcaccat caaagagttg ctggaagatc cgacccgtct gctgttggac gtgtagtcag
    12781 caagagcatc acctgctacc tgtaggccgg ataaggcgtt cacgccgcca tccggcgatg
    12841 gtgtaatgcc tgatggcgcg cagctttcag gcctacaggt ctaaagataa cgattacctg
    12901 aaggatggac agaacacatg aacttacatg aatatcaggc aaaacaactt tttgcccgct
    12961 atggcttacc ggcgccggtg ggttatgcct gtactactcc gcgtgaagcc gaagaagccg
    13021 cgtctaaaat cggtgccggc ccgtgggtag tgaaatgtca ggttcacgct ggcggccgcg
    13081 gcaaagcggg cggtgtgaag gtagtaaaaa gcaaagaaga gattcgcgcc tttgcggaaa
    13141 actggctggg caaacgtctg gtgacctatc aaacagacgc taatggccaa ccggtaaacc
    13201 agattctggt tgaagcggcg accgacatcg gcaaagaact gtacctcggc gcggtggttg
    13261 accgtagttc tcgtcgcgtg gtctttatgg cgtctaccga aggtggcgta gagatcgaaa
    13321 aagttgcgga ggaaaccccg catctgatcc ataaagtcgc gctcgatccg ctgaccggcc
    13381 cgatgccgta tcagggacgg gaactggcgt tcaaattggg tctggaaggt aaactggtgc
    13441 agcagttcac caaaatcttt atgggcctgg caaccatttt tcttgagcgc gacctggcgc
    13501 taatcgaaat taatccgctg gtgatcacta agcagggcga tctgatttgc ctcgacggca
    13561 agctgggcgc tgacggcaac gcgctgttcc gccagccgga tctgcgcgaa atgcgcgacc
    13621 agtctcagga agacccgcgt gaagcgcagg cggcacagtg ggaactgaac tacgtcgcgc
    13681 tggacggcaa catcggttgc atggtgaacg gcgcgggcct ggcgatgggc accatggaca
    13741 tcgttaagct gcatggcggc gaaccggcta acttccttga cgtaggcggc ggcgcaacca
    13801 aagagcgcgt caccgaagcg tttaaaatta tcctctcgga tgacaacgtg aaagcggttc
    13861 tggttaacat cttcggcggt atcgtccgtt gtgacctgat tgccgacggt atcatcggcg
    13921 cggtggaaga agtgggcgtg aacgttccgg tggtggtgcg tctggaaggc aacaacgccg
    13981 aactcggcgc gaagaaactg gctgacagtg gcctgaatat tattgcagcg aaaagtctga
    14041 cggatgcagc tcagcaggtt gttgccgcag tggaggggaa ataatgtccg ttttaattaa
    14101 taaagatacc aacgttatct gccagggctt caccggtagc caggggactt tccactccga
    14161 acaggcgatt gcttacggta cgcaaatggt cggcggcgta acgccgggca aaggcggcac
    14221 cacgcatctg ggtctgccgg tgttcaacac cgtgcgcgaa gcggtagaag ctaccggtgc
    14281 gaccgcatcc gttatctacg tcccggcgcc gttctgcaaa gactccattc tggaagcgat
    14341 cgacgcaggc atcaaactga ttatcaccat caccgaaggt attccgacgc tggatatgct
    14401 gaccgtgaaa gtgaagctgg acgaagcggg cgtacgcatg atcggcccga actgcccagg
    14461 tgtgatcacc ccgggcgaat gcaaaatcgg catcatgccg ggtcacattc ataagccggg
    14521 taaagtgggt atcgtttccc gttccggcac gctgacctat gaagcggtta agcagaccac
    14581 cgactacggt ttcggccagt ccacctgcgt gggtatcggc ggcgacccga ttccgggctc
    14641 taacttcatc gacattctga aactgttcca ggaagatccg cagactgaag cgatcgtgat
    14701 gatcggcgag atcggcggca gcgcggaaga agaagcggcg gcttatatta aagaccacgt
    14761 gaccaagccg gttgttggct atatcgcggg cgttaccgcg ccgaaaggca aacgtatggg
    14821 ccacgctggc gccatcattg ccggtggtaa aggtaccgct gatgagaaat tcgctgctct
    14881 ggaagcggct ggcgtgaaga cggttcgcag cctggccgat atcggcgaag cgctgaaagc
    14941 aattataaaa taaaaactcg ctgttcctgc gggaacagat aaatgtccgt tttcgacatg
    15001 gttggccacc tttacggtgg ccttttttat ggttttattg tttgtggcaa agtacgggtg
    15061 aagcatccgg gatataaaat tattggcttt gtaaatattg aggtatagga aaatgatgac
    15121 tcattaaaaa aacatggtgg agtctgaaaa taattgataa taaccgtctg gcagcggcag
    15181 taaatttact cagtttgccg gttaactctt tttcagcaaa tacacatgct gtcttagtga
    15241 aagacctgcc gacctcactg gagacggatt atgcgctttc cgccatgaaa aa
//
LOCUS       DAJVSD010000091        15277 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.091, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000091 DAJVSD010000000
VERSION     DAJVSD010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 15277)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15277)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15277
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.091"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            80..652
                     /locus_tag="OQP62_002304"
                     /pseudo
     CDS             80..652
                     /locus_tag="OQP62_002304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460129.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
     gene            649..1224
                     /locus_tag="OQP62_002305"
     CDS             649..1224
                     /locus_tag="OQP62_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HCS1721844.1"
                     /translation="MKKNLLGFTLASLLFTTGSAVAAEYKIDKEGQHAFVNFRIQHLG
                     YSWLYGTFKDFDGTFTFDEKNPSADKVNVTINTNSVDTNHAERDKHLRSAEFLNVAKF
                     PQATFTSTSVKKEGDELDITGNLTLNGVTKPVTLEAKLMGQGDDPWGGKRAGFEAEGK
                     IKLKDFNITTDLGPASQEVELIISVEGVQQK"
     gene            complement(1276..2328)
                     /locus_tag="OQP62_002306"
     CDS             complement(1276..2328)
                     /locus_tag="OQP62_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HCS1721845.1"
                     /translation="MPVLHNRISNDELKAKMLAESEPRTTISFYKYFTIASPQQTRDA
                     LYQVFTALDVFGRVYLAHEGINAQISVPQSKVETFRQQLYTFDPALDGVRLNIALEDD
                     GKSFWVLRMKVRDRIVADGIDDPSFDASNVGDYLKAADVNAMLDDPDAVFIDMRNHYE
                     YEVGHFENALEIPADTFREQLPKAVEMLREHADKKIVMYCTGGIRCEKASAWMKHNGF
                     NKVWHIEGGIIEYARRAREQGLPVRFIGKNFVFDERMGERISDEVIAHCHQCGVSCDS
                     HTNCKNDGCHLLFIQCPQCASKFNGCCSEQCCEELALPEEEQRRRRAGRENGNKIFNK
                     SRGRLNSKLSIPDPAE"
     gene            2548..3468
                     /locus_tag="OQP62_002307"
     CDS             2548..3468
                     /locus_tag="OQP62_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LpxL/LpxP family Kdo(2)-lipid IV(A)
                     lauroyl/palmitoleoyl acyltransferasee"
                     /protein_id="HCS1721846.1"
                     /translation="MTKLPKFSVALLHPRYWLTWLGIGALWLVVQLPYPVIYKLGCAL
                     GHLARRVMKRRAKIAYRNLELCFPEMSAQERHTMVVKNFESVGMGVMETGMAWFWPDR
                     RVNRWMEASGLEHIREVKAQGLGFILVGIHFLTLEFGARMFGMHNPGIGVYRPNDNPL
                     LDWLQTWGRLRSNKSMLDRKDLKGMVKALKSGELIWYAPDHDYGPRASVFVPLFAVDQ
                     AATTSGTWMLARMSKACIIPSVPRRKPDGKGYELIILPAEYSPPLESAEATAAWMNKI
                     VEQCIMMAPEQYMWLHRRFKTRPEGVPSRY"
     gene            3623..4837
                     /gene="mdtG"
                     /locus_tag="OQP62_002308"
     CDS             3623..4837
                     /gene="mdtG"
                     /locus_tag="OQP62_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtG"
                     /protein_id="HCS1721847.1"
                     /translation="MSPSDVPINWKRNLTVTWLGCFLTGAAFSLVMPFLPLYVEQLGV
                     TGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIILLRSALGMAIVMLLMGMA
                     QNIWQFLILRALLGLLGGFIPNANALIATQVPRHKSGWALGTLSTGGVSGALLGPLAG
                     GLLADHYGLRPVFFITASVLFICFLLTFFFIRENFLPVSKKEMLHVREVVASLKNPRL
                     VLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRL
                     GKLGDRIGPEKILIVALIISVLLLIPMSFVQTPWQLALLRFLLGAADGALLPAVQTLL
                     VYNSTNQIAGRIFSYNQSFRDIGNVTGPLMGAAISASYGFRAVFCVTAGVVLFNAIYS
                     WNSLRRRRLAIE"
     gene            4919..5293
                     /locus_tag="OQP62_002309"
     CDS             4919..5293
                     /locus_tag="OQP62_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secY/secA suppressor protein"
                     /protein_id="HCS1721848.1"
                     /translation="MTMYATLEEAIDAAREEFLADHPGLEQDEANVQQFNVQKYVLQD
                     GDIMWQVEFFADEGEDGECLPMLSGEAAQSVFDGDYDEIEIRQEWQEENTLHEWDEGE
                     FQLEPPLDTEEGRTAADEWDER"
     gene            complement(5294..5521)
                     /locus_tag="OQP62_002310"
     CDS             complement(5294..5521)
                     /locus_tag="OQP62_002310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HCS1721849.1"
                     /translation="MRIFAVSIMVITLSGCGSIISRTIPGQGHGNQYYPGVQWDMRDS
                     AWRYITILDLPFSLIFDTLLLPLDIHHGPYE"
     gene            complement(5595..8138)
                     /gene="mdoH"
                     /locus_tag="OQP62_002311"
     CDS             complement(5595..8138)
                     /gene="mdoH"
                     /locus_tag="OQP62_002311"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001044602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis glucosyltransferase MdoH"
                     /protein_id="HCS1721850.1"
                     /translation="MNKTTEYIDALLLSEREKAALPKTDIRAVHQALDAEHRTYSRED
                     DSPQGSVKARLEHAWPDSLAKGQLIKDDEGRDQLQAMPKATRSSMFPDPWRTNPVGRF
                     WDRLRGRDVTPRYVSRLTKEEQASEQKWRTVGTIRRYILLILTLAQTVVATWYMKTIL
                     PYQGWALINPMDMVGQDIWVSFMQLLPYMLQTGILILFAVLFCWVSAGFWTALMGFLQ
                     LLIGRDKYSISASTVGDEPLNPEHQTALIMPICNEDVSRVFAGLRATWESVKATGNAA
                     HFDVYILSDSYNPDICVAEQKAWMELIAEVQGEGQIFYRRRRRRMKRKSGNIDDFCRR
                     WGNQYSYMVVLDADSVMSGECLSGLVRLMEANPNAGIIQSSPKASGMDTLYARCQQFA
                     TRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIEHCALAPLPGEGSFAGSILSHDF
                     VEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRWCHGNLMNFRLFLVKGMHP
                     VHRAVFLTGVMSYLSAPLWFMFLALSTALQVVHALTEPQYFLQPRQLFPVWPQWRPEL
                     AIALFASTMVLLFLPKLLSIMLIWCKGTKEYGGFWRVTLSLLLEVLFSVLLAPVRMLF
                     HTVFVVSAFLGWEVVWNSPQRDDDSTPWGEAFMRHGSQLLLGLVWAVGMAWLDLRFLF
                     WLAPIVFSLILSPFVSVISSRSTVGLRTKRWKLFLIPEEYSPPQVLVDTDKYLEMNRR
                     RILDDGFMHAVFNPSLNALATAMATARHRASKVLEIARDRHVEQALNETPEKLNRDRR
                     LVLLSDPVTMARLHYRVWNAPERYSSWVNHYQSLVLNPQALQGRTSSAG"
     gene            complement(8131..9666)
                     /gene="mdoG"
                     /locus_tag="OQP62_002312"
     CDS             complement(8131..9666)
                     /gene="mdoG"
                     /locus_tag="OQP62_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis protein MdoG"
                     /protein_id="HCS1721851.1"
                     /translation="MMKMRWLGAAIMLTLYASSSWAFSIDDVAKQAQSLAGKGYEAPK
                     SNLPSVFRDMKYADYQQIQFNSDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATT
                     VKRIKYSPDYFNFGNVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVI
                     GAGQVYGLSARGLAIDTALPSGEEFPRFREFWIERPKPTDKRLTVYALLDSPRATGAY
                     RFVIIPGRDTVVDVQSKVYLRDKVGKLGVAPLTSMFLFGPNQPSPTTNYRPELHDSNG
                     LSIHAGNGEWIWRPLNNPKHLAVSSYAMENPQGFGLLQRGREFSRFEDLDDRYDLRPS
                     AWITPKGDWGKGKVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTLTFSRDED
                     KLHAPDNAWVLQTRRSTGDVKQSNLIRQPDGTIAFVVDFVGADMKKLPPDTPVAAQTS
                     IGDNGEIVDSNVRYNPVTKGWRLMLRVKVKDAKKTTEMRAALVNADQTLSETWSYQLP
                     ANE"
     gene            9938..11092
                     /gene="mdoC"
                     /locus_tag="OQP62_002313"
     CDS             9938..11092
                     /gene="mdoC"
                     /locus_tag="OQP62_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis protein MdoC"
                     /protein_id="HCS1721852.1"
                     /translation="MSSVPAPREYFLDSIRAWLMLLGIPFHISLIYSTHSWHVNSAAP
                     SWWLTLFNDFIHAFRMQVFFVISGYFSYMLFLRYPLKHWWKVRVERVGIPMLTAIPLL
                     TLPQFILLQYVKEKTENWPTLSAYEKYNTLAWELISHLWFLLVLVILTTVSIGIFTWF
                     QKRQETSKPRPAAISLAKLSLIFFLLGVAYAAIRRIIFIVYPAILSDGMFNFIVMQTL
                     FYVPFFILGALAFIHPDLKARFTTPSRGCTLGAAVAFIAYLLNQRYGSGDAWMYETES
                     VITMVMGLWMVNVVFSLGHRLLNFQSARVTYFVNASLFIYLVHHPLTLFFGAYITPHI
                     SSNLIGFLCGLIFVMGIALILYEIHLRIPLLKFLFSGKPPVKQESRAAIG"
     gene            complement(11109..12596)
                     /locus_tag="OQP62_002314"
     CDS             complement(11109..12596)
                     /locus_tag="OQP62_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706957.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HCS1721853.1"
                     /translation="MMKKLPGFTQDYLLSKATTLPDKTRLERAVEPLCARHPGECGIL
                     ALDNSLDAFAARYRLTEMAARTLDVQYYIWEDDMSGRLLFSVLLSAAKRGVHVRLLLD
                     DNNTPGLDDTLRLLDSHPNIEVRLFNPFSFRTLRALGYLTDFARLNRRMHNKSYTADG
                     VVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVNDVANDFERYWRCSSVSTLQQVL
                     SLSEQELTQRIELPESWYNDEITRRYLHKLETSQFMADLDRGTLPLIWAKTRLLSDDP
                     SKGEGKAQRHSLLPQRLFDVMGSPTERIDIISAYFVPTRAGVAQLLNLVRKGVKIAIL
                     TNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREHETAVHDRGLTGNSGSSLHA
                     KTFSIDGSKVFIGSLNFDPRSTLLNTEMGFVIESETLATLIHKRFTQSQRDAAWQLRL
                     DRWGRINWIDRQQEEEKVLKKEPATRFWQRVLVRLAAILPVEWLL"
     gene            complement(12532..13071)
                     /gene="ymdB"
                     /locus_tag="OQP62_002315"
     CDS             complement(12532..13071)
                     /gene="ymdB"
                     /locus_tag="OQP62_002315"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetyl-ADP-ribose deacetylase"
                     /protein_id="HCS1721854.1"
                     /translation="MTSRLQVIQGDITQLSVDAIVNAANASLMGGGGVDGAIHRAAGP
                     ALLDACKLIRQQQGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYR
                     NCLLLAEANHFRSIAFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYD
                     EETARLYARLLTQQGDDPA"
     gene            complement(13159..13479)
                     /locus_tag="OQP62_002316"
     CDS             complement(13159..13479)
                     /locus_tag="OQP62_002316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS1721855.1"
                     /translation="MSVIKKNIPAIGLCICAFFIHSAVGQQTVQGGVIHFRGAIVEPL
                     CDISTHAENIDLTCLREGKKQMHRIDLRQASGLPQDIQSIATVRLHYLDAQKSLAVMN
                     IEYR"
     gene            complement(13611..13937)
                     /gene="csgC"
                     /locus_tag="OQP62_002317"
     CDS             complement(13611..13937)
                     /gene="csgC"
                     /locus_tag="OQP62_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curli assembly protein CsgC"
                     /protein_id="HCS1721856.1"
                     /translation="MHTLLLLAALSNQITFTTTQQGDIYTVIPQVTLNEPCVCLVQIL
                     SVRDGVGGQSHTQQKQTLSLPANQPIELSRLSVNISSEDSVKIIVTVSDGQSLHLSQQ
                     WPPSAQ"
     gene            complement(13999..14454)
                     /gene="csgA"
                     /locus_tag="OQP62_002318"
     CDS             complement(13999..14454)
                     /gene="csgA"
                     /locus_tag="OQP62_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curlin major subunit CsgA"
                     /protein_id="HCS1721857.1"
                     /translation="MKLLKVAAFAAIVVSGSALAGVVPQWGGGGNHNGGGNSSGPDST
                     LSIYQYGSANAALALQSDARKSETTITQSGYGNGADVGQGADNSTIELTQNGFRNNAT
                     IDQWNAKNSDITVGQYGGNNAALVNQTASDSSVMVRQVGFGNNATANQY"
     gene            complement(14496..14951)
                     /gene="csgB"
                     /locus_tag="OQP62_002319"
     CDS             complement(14496..14951)
                     /gene="csgB"
                     /locus_tag="OQP62_002319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curlin minor subunit CsgB"
                     /protein_id="HCS1721858.1"
                     /translation="MKNKLLFMMLTILGAPGIATATNYDLARSEYNFAVNELSKSSFN
                     QAAIIGQVGTDNSARVRQEGSKLLSVISQEGENNRAKVDQAGNYNFAYIEQTGNANDA
                     SISQSAYGNSAAIIQKGSGNKANITQYGTQKTAVVVQKQSHMAIRVTQR"
BASE COUNT         3623 a         4060 c         3783 g         3811 t
ORIGIN      
        1 caaattctta tttataagtt gcattcggcg cttttccacg ccattttcat tctctcgtga
       61 aatattcatt ggtgtgttta tgcaatttaa aaatactcca caacgttatg gcgtagtttc
      121 cgccgccctc cactggctga ccgccctagt ggtctatggc atgtttgcgt tgggtttatg
      181 gatggtcacg ctcagttatt acgacggctg gtatcactag gcgccggaaa tacataaaag
      241 tattggcatg ttactgatga tggcgctgat cgtgcgtatt atctggcggc tttattctcc
      301 gccgcccgtt gcgttgacca gctattcccg tttaacgcgc attggcgccg ccgcgggtca
      361 tatccttctg tatctcctgc tctttgcgat aatcattagc ggctacctga tttccaccgc
      421 cgacggtaaa ccgattagcg tctttggctg gtttgagatt ccggccacgc ttacggacgc
      481 gggcgcgcag gctgacatcg ccggaacact gcatctgtgg tttgcctggt cgctggtcat
      541 tatctcgctc tcgcatgggg ttatggcgct aaaacaccat ttcatcgata aagacgacac
      601 actgaaacgt atgacaggaa tgtcgtcatc tgactatgga gctcaaaaat gaaaaaaaac
      661 ctgctgggat tcaccctcgc atccttgtta ttcacgaccg gttccgccgt ggcggcggag
      721 tataaaattg ataaagaagg ccaacatgcg ttcgtcaatt tccgcatcca gcatctgggc
      781 tacagctggc tatacggcac ctttaaagat ttcgacggca cgttcacttt tgacgaaaaa
      841 aatccgtcag cagacaaagt gaatgtgacc attaacacca atagcgtcga cactaaccat
      901 gccgaacgtg acaaacacct gcgtagcgcg gagtttctta atgttgcgaa attcccgcag
      961 gcaaccttca cctctaccag cgtgaaaaaa gagggcgatg aactggatat taccggcaat
     1021 ctgacgctca atggcgtgac taaaccggtg acgctggaag cgaagctgat gggccagggc
     1081 gacgatccgt ggggcggtaa gcgcgcgggc tttgaggccg aaggaaaaat taagctgaaa
     1141 gatttcaata taactaccga tctcggccca gcctcacaag aggtggagct tatcatctca
     1201 gtagaaggcg ttcagcagaa gtaacgcctg gcgaaatgcc ggatagcagc ctttacgccg
     1261 ctatccggca aaatattact cagccggatc gggaatgctc agtttgctat taagccgacc
     1321 ccgcgattta ttaaaaattt tgttgccgtt ctcacgaccc gcgcgacgtc ggcgctgttc
     1381 ttcctccggc aaggccaact cttcacagca ttgttcacta cagcagccgt taaatttact
     1441 ggcgcactgc ggacactgga taaacagcag atggcaaccg tcgtttttgc agttggtatg
     1501 gctatcgcag gacacgccgc actgatggca atgcgcgata acctcatccg agatgcgctc
     1561 gcccattcgc tcatcaaata caaagttttt gccgataaag cgaacgggaa gcccctgctc
     1621 gcgcgcgcga cgggcgtact caatgatgcc accctcaata tgccagactt tattgaaacc
     1681 gttgtgtttc atccaggcgc tggctttctc acaacgaata ccgccggtac agtacatcac
     1741 tatcttttta tctgcatgtt cccgcagcat ttcaaccgct tttggcaact gttcacgaaa
     1801 cgtatccgcc gggatttcca gagcattttc gaaatggccg acttcatact catagtggtt
     1861 gcgcatatca ataaagaccg cgtcaggatc gtccagcatc gcattcacat ctgccgcctt
     1921 cagataatcg ccgacattac tggcgtcaaa actcggatcg tcaataccgt cagcgacgat
     1981 acggtcgcga actttcatac gcagcaccca aaatgacttt ccgtcatcct ccagcgcgat
     2041 atttaaacgc accccgtcca gcgcggggtc gaacgtataa agctgttgac gaaaggtctc
     2101 aaccttgctt tgcggcacgc tgatttgcgc attgatgccc tcatgcgcca ggtaaacgcg
     2161 accaaaaacg tccaacgccg taaacacctg atacaacgcg tcccgcgtct gttgcggcga
     2221 ggcgatagtg aaatatttat aaaaagaaat tgtcgtacgc ggctcgcttt ccgccagcat
     2281 tttggctttc agctcgtcat tagagatgcg gttgtgtaac actggcatgg tgtacgtatc
     2341 ctgcaatcag caaaaaataa agtgggcagg catgataagg caagtctcgc caatttacat
     2401 ccacacattt tgcgctacat ttcctgcttt acgctaaata attaacaaca attgtcgatt
     2461 taatcgccac tctcctgcta catatttttg ctcaacgcaa aaagatgcga gaatacggag
     2521 aattgttcgt tgaaagacag gatagaaatg acgaagttgc ctaagttctc cgtggcctta
     2581 ctgcacccgc gctattggtt aacctggttg ggtataggcg cgctttggtt ggtcgtgcaa
     2641 ctcccctacc cggtcatcta taaattgggt tgcgcattgg gccacctggc gcgacgcgta
     2701 atgaaacgcc gcgcgaaaat cgcctatcgc aaccttgaat tatgctttcc ggaaatgagc
     2761 gcgcaggaac gccacaccat ggtggtcaaa aactttgaat ccgtcggtat gggcgtgatg
     2821 gaaaccggca tggcctggtt ctggcccgat cggcgagtga accgctggat ggaagcgagc
     2881 ggtctggagc atatccgtga agttaaggcg caggggctgg ggttcattct ggtaggaata
     2941 catttcctta cccttgagtt tggcgcccgc atgtttggta tgcataaccc gggtatcggc
     3001 gtttatcgcc cgaatgataa tccgttgctc gactggttac agacctgggg gcgcttacgc
     3061 tccaataaat cgatgttgga tcgcaaagat ctgaaaggta tggttaaggc attgaaaagc
     3121 ggcgaattga tctggtatgc gccggatcac gattatggcc cgcgcgccag cgtctttgta
     3181 ccgttattcg ccgtcgacca ggccgctacg acctccggta cctggatgct cgcgcgcatg
     3241 tctaaagcct gtattatccc ctccgtgcct cgccgtaaac ccgacgggaa aggctacgaa
     3301 ctgatcatcc ttcctgcgga atattcgcct ccgctggaga gcgcagaagc gactgccgca
     3361 tggatgaata agattgttga gcagtgcatt atgatggcgc cagagcagta tatgtggctg
     3421 catcgccgct ttaaaactcg ccctgaaggc gtaccgtcgc gctattgaca ggattgcagc
     3481 cgtcaggctg caatttttcc cctcttttag ctttaaaagc tccccacatt gcgaggctgg
     3541 taaggtcggc gcataattat aattagtacg ctcataatta aattgatgat agcgcaaaac
     3601 gcgcatcata ctgtggaaca ctatgtcacc ctctgatgtc cccataaact ggaaacgcaa
     3661 tctaaccgtt acctggctgg gctgtttttt aaccggcgcg gcattcagtc tggtcatgcc
     3721 ttttctccct ctctacgttg agcaactcgg cgtaacaggc catagcgcgc tcaacatgtg
     3781 gtccgggctg gtctttagta ttacgttcct cttttcagct atcgcttccc ctttttgggg
     3841 cggtctggcg gatcgtaaag ggcgtaagat catactgttg cgttccgctc tcggcatggc
     3901 cattgtgatg ctgttaatgg gcatggcgca aaatatctgg caatttctga tcctccgcgc
     3961 gttattaggc ctgctgggcg gatttattcc caacgccaat gcgctcatcg ccactcaggt
     4021 gccgcgccac aaaagcggct gggcgttagg gacgctctct actggcggcg tcagcggcgc
     4081 tctgcttggc ccacttgcgg gcggtctgct cgccgaccat tacggccttc gcccggtctt
     4141 ttttattacc gccagcgttt tgtttatctg ttttctgctc accttctttt ttattcgcga
     4201 gaatttcctg ccggtgagca aaaaagagat gcttcacgtt cgggaagtgg tcgcctcgtt
     4261 aaaaaatccc cgcctggtgt taagcctgtt tgtcaccacg ctgattattc aggtggcgac
     4321 ggggtctatt gcgcccatcc tgacgctcta tgtgcgcgaa ctcgcgggaa atgtcagtaa
     4381 tattgcgttc attagcggga tgatagcgtc cgttcccggc gtggcggcat tacttagcgc
     4441 cccccggctc ggcaagctcg gcgacagaat tggcccggaa aagatcctta tcgtcgcgct
     4501 gattatttcc gtactgctgc tgattccaat gtcttttgtg caaacgccgt ggcagctcgc
     4561 gctattgcgg tttctgcttg gcgcggcgga tggcgcgctg ctgccagccg ttcaaactct
     4621 gctggtttac aactctacca accagatagc cgggcgcata ttcagttaca accaatcttt
     4681 ccgcgatatc ggcaacgtca ccggccctct catgggtgcc gcaatttccg cgagctatgg
     4741 cttccgcgcc gtattctgcg tcacggcagg cgtggtgttg ttcaatgcta tctattcatg
     4801 gaacagctta cgacggcgca gactggcaat agaatgattt ttgcgctttc atacttgcaa
     4861 tatcacagaa tcagctattc tttccctaaa tacctcgtca aatcaaaggg agacactgat
     4921 gaccatgtat gccacgctgg aagaagctat cgatgcagcc cgggaagaat ttctggctga
     4981 ccatccaggc ctcgaacaag acgaagcgaa tgtgcagcag ttcaacgttc agaaatatgt
     5041 actgcaggat ggggacatca tgtggcaggt cgaatttttc gccgatgaag gtgaagatgg
     5101 cgaatgtctg ccgatgctga gtggtgaagc cgcacagagc gtgtttgacg gcgattatga
     5161 tgagatagag atccgccagg aatggcagga agagaatact ttgcatgaat gggatgaagg
     5221 ggaattccag cttgaacccc cgcttgatac cgaggaaggc cgtactgcgg cagacgaatg
     5281 ggatgagcgt taattactca taaggcccgt ggtgaatatc gagcggcagt agcagtgtat
     5341 cgaagatcag tgagaagggc agatcgagga tagtgatata gcgccatgcg gaatcacgca
     5401 tatcccactg cacgccaggg taatactggt tgccgtgtcc ttgtccgggg atcgttctgc
     5461 tgataatact gccgcagccg ctcagggtaa tcaccattat gctcaccgcg aatatacgca
     5521 cctgatacct catttcacta taaaaatacc ggcatcacgc cggtattttt cacctcactc
     5581 cagacctgaa gaccttatcc cgctgacgat gttcgtccct gcaacgcctg cggattcagg
     5641 acgagagact gataatggtt tacccaggaa gagtatctct ctggcgcatt ccagacccga
     5701 tagtgtaaac gcgccatcgt caccggatcg ctgagcaaaa ccagacgccg atcgcggttc
     5761 agtttctccg gcgtttcgtt tagcgcctgc tccacatgac gatcgcgggc tatttccagc
     5821 accttactgg cgcggtgacg cgcggtggcc atcgcggtcg ccagcgcatt aagcgacggg
     5881 ttaaataccg catgcataaa gccatcgtcc agaatacggc ggcgattcat ctccagatat
     5941 ttatcggtat cgaccaacac ctgaggcggc gaatactctt ccgggatcag gaacagcttc
     6001 cagcgtttgg tgcgtaatcc taccgttgaa cgactggaga tcaccgaaac aaatggcgac
     6061 agaatcagcg aaaagacaat cggcgccagc cagaacagaa agcgtaaatc cagccacgcc
     6121 atacccaccg cccagaccag ccccagcagc agttgagagc cgtgacgcat aaaggcttct
     6181 ccccacggcg tagaatcatc gtcgcgttgc ggtgagttcc agaccacttc ccagccgagg
     6241 aacgcgctga ccacaaacac ggtatgaaac agcatacgca ccggcgccag caacacggag
     6301 aacagcactt ccagcaatag cgacagcgta acgcgccaga aaccgccata ctctttggtg
     6361 cctttacacc agatcagcat aatactgagc agcttcggca ggaacagcag caccatcgtt
     6421 gacgcaaaca gcgcgattgc cagttccgga cgccactgcg gccagaccgg aaaaagctgg
     6481 cgcggctgaa ggaaatattg cggctctgtt aacgcatgaa cgacctgcag cgcggtagaa
     6541 agcgcgagga acataaacca taacggcgcg gacaggtatg acattacccc ggtcaggaac
     6601 acggcgcgat gcaccgggtg cattcctttc accaggaaca gacgaaagtt catcaggttg
     6661 ccgtgacacc agcggcggtc gcgtttaagc tcatccagca ggtttggcgg cagctcttca
     6721 taggagccgg ggagatcgta ggcaatccag acgccccacc ctgcccgacg cattagcgcc
     6781 gcctccacaa agtcgtggga aagaatcgat ccggcgaacg aaccttctcc cggcagcggc
     6841 gccagagcgc agtgctcgat aaacggcttc acgcggataa tggcattgtg cccccagtag
     6901 tgcgactccc ccaactgcca gaagtgcagc ccggcggtaa acagcggtcc ataaacacgg
     6961 gtcgcgaact gttggcagcg ggcatacaga gtatccatcc ccgacgcttt cggcgaagac
     7021 tggataatcc cggcgttagg gttcgcttcc atcaggcgca ccagcccgct cagacactcg
     7081 ccgctcatca ctgagtccgc gtccagcacc accatatagc tgtactgatt gccccagcgg
     7141 cggcaaaaat cgtcaatatt gccgcttttg cgtttcatac ggcggcggcg gcgacggtaa
     7201 aaaatttggc cttcgccctg cacttccgcg atgagctcca tccacgcctt ttgctccgcc
     7261 acgcagatat ccgggttata actatcgcta aggatataga cgtcaaaatg cgcggcgttg
     7321 cctgtggctt taacggactc ccaggtcgcg cgcagaccgg cgaaaacgcg gctaacgtct
     7381 tcattacaga taggcatgat cagcgccgtc tggtgttccg gattgagggg ctcatcgcca
     7441 accgtagacg cggagatact gtacttatcg cgcccgataa gcagttgcag gaagcccatc
     7501 agcgccgtcc agaatccggc agacacccag cagaacagca cggcaaacaa aatcaggata
     7561 ccggtttgca gcatgtaggg caggagctgc ataaaggaga cccaaatatc ctgccccacc
     7621 atatccatag gattgatgag cgcccatccc tgatagggca gaatggtctt catataccag
     7681 gtcgcgacga cggtttgcgc cagagtcaaa attaacaaaa tatagcggcg tatagtgccg
     7741 acggtacgcc atttttgctc actcgcctgc tcttcttttg tcagacgaga aacatagcgc
     7801 ggcgttacat cccgcccacg caggcgatcc cagaaacggc caaccgggtt ggttcgccag
     7861 ggatcaggaa acatcgaaga gcgcgtcgct tttggcatag cctgcaactg atcgcgccct
     7921 tcatcatctt taattaactg ccccttcgcc aatgaatccg gccaggcgtg ttcaaggcgg
     7981 gcttttacgg aaccctgcgg tgaatcgtct tctcgcgagt aagtccgatg ctcggcatcc
     8041 agcgcctgat gcacggcgcg gatgtcagtt ttcggcaatg ccgctttctc acgttcagaa
     8101 agcagcagtg cgtcaatata ctcagttgtt ttattcattg gcaggtaact ggtagctcca
     8161 ggtttcactt agcgtctgat cggcattcac caatgcggca cgcatttccg tggttttctt
     8221 cgcgtctttg actttcacgc gcagcattaa acgccagcct ttagtgactg ggttatagcg
     8281 tacattactg tcaacgattt caccgttatc gccaatgctg gtttgtgcag cgacgggcgt
     8341 atccggcggc agttttttca tgtcggcgcc aacgaaatcc accacaaagg caatagtgcc
     8401 gtcgggctgg cgaatcagat tcgactgttt aacgtcgccc gttgagcggc gtgtttgcag
     8461 cacccaggca ttatccggcg catgaagttt atcttcatcg cggctgaagg tcagagtgta
     8521 cttgaagttc atctctttac ccggttccgg cagttgatcc ggagtccagt aagcgacgat
     8581 gttatcgttg gtttcatcat tggtcggaat ttcaaccagt tcaaccttac ctttgcccca
     8641 gtcgcctttc ggggtaatcc aggcgcttgg acgcaggtca tagcgatcgt ctaaatcttc
     8701 aaagcgcgag aactcgcgac cacgctgcaa caggccgaat ccctgagggt tttccatcgc
     8761 atagctgctc acagcgaggt gttttggatt gttcagcgga cgccaaatcc actcgccatt
     8821 acccgcatga atggataagc cgttcgagtc atgcaattcc ggacgatagt tggtcgtcgg
     8881 cgacggctgg tttggcccaa acaggaacat actggttaat ggcgcaacgc ccagcttgcc
     8941 caccttatcg cgcagataga cttttgactg cacgtccacc acggtatcgc ggccaggaat
     9001 gatcacaaaa cggtaagcgc cggtcgcgcg cggagaatcc agtaatgcat agacggtcaa
     9061 acgcttatcg gtgggttttg gacgctcaat ccagaactcg cgaaagcggg gaaactcttc
     9121 accagatggt aaggcggtat caatcgccag gccgcgcgca gataagccat acacctggcc
     9181 tgcgccgata acgcggaaat agctggcgcc aagcatactg acgatttcgt cgttcttatc
     9241 tttactgtta atggggtaca ggactttgaa cccggcgaag cctaaatctt ttaccgtgtc
     9301 tttatcgtgc tgaacattgc caaaattgaa gtaatccggg ctgtatttga ttcttttgac
     9361 cgtcgtcgcc gtcacttcgt taatcttgac cggcgtatcg aagtacatcc cctgatggta
     9421 aaattcgagc ttaaaagggg tctttaagtt gttccagtag gctttatcgc tgttaaactg
     9481 gatctgctga taatccgcat atttcatgtc gcggaaaacg gagggcaagt tgcttttagg
     9541 cgcctcatag cctttcccgg ctaaagattg agcttgtttt gccacgtcat caatactgaa
     9601 cgcccagctc gatgatgcgt agagcgttaa cataatagct gcgcccaacc aacgcatttt
     9661 catcatttgt cgtttatgtt tcataataag taagcacttc cccctttgtg tgcttatatc
     9721 gatccgatcc attttaatgg ataatcaggc attacgacaa ctgaatccag gctttgttca
     9781 gcgcgctggc tcatggatta agcacctccc gcgcctgttt tcactttgcg tgcttatcct
     9841 ggagacaggt tgtcggagtt ggtgtagggt tgctaccgaa tgtaactata attcgcctta
     9901 tggataaggt gaaaaatctg agaatacgtg accttatatg agctctgtac ccgcgccgcg
     9961 tgaatatttt cttgactcta tccgcgcatg gctgatgttg ttagggattc cctttcatat
    10021 ctcgttgatc tattccactc acagttggca tgtcaatagc gccgcgccat cgtggtggct
    10081 aaccctgttt aacgatttta tccacgcttt tcgtatgcag gtgttttttg ttatttctgg
    10141 ttatttttcg tacatgttat ttttacgtta tccattaaaa cactggtgga aagtacgggt
    10201 agaacgtgtg ggtattccca tgcttaccgc aatccctttg cttaccttgc cgcaatttat
    10261 cctgttgcaa tatgtcaaag agaaaacaga gaactggcct acactctctg cctatgaaaa
    10321 atataatacg ttagcgtggg aactcatttc acatctgtgg tttttactgg tgctggtgat
    10381 attaaccacc gtcagcatcg ggatttttac ctggttccaa aaaaggcagg aaacaagcaa
    10441 gcctcgtccc gccgctattt cgctggccaa actttcgctt atttttttcc tgctgggggt
    10501 ggcgtacgct gctatcaggc gcattatatt catcgtatat ccggcaatcc tcagtgacgg
    10561 catgttcaat tttattgtga tgcaaacgct attttatgtg ccgtttttta ttctcggcgc
    10621 gttggccttc attcaccccg atctgaaagc gcgcttcacc acgccctcac gcggatgcac
    10681 tttaggcgct gccgttgctt ttatcgcgta tctgctgaat caacgttatg ggagcggcga
    10741 cgcctggatg tacgaaaccg aatccgtgat tacgatggta atggggctat ggatggtgaa
    10801 cgtggtattt tcactggggc atcgcttgtt aaactttcag tccgcgcgtg tcacctattt
    10861 cgtgaatgct tcgctgttta tttatctggt gcatcatccc ttaacgcttt tctttggcgc
    10921 gtatattaca ccgcatatct cctccaacct gatcgggttc ttgtgcgggc tgatatttgt
    10981 tatgggtatt gcgttaattc tgtatgaaat tcatttacgc atcccgctcc tgaaatttct
    11041 cttttcaggt aaaccgccgg taaaacaaga aagccgcgcc gcgatcgggt agttttccgc
    11101 gcgcgggttc acagcaacca ttccacaggt aaaattgccg ccaaccgtac cagaactcgc
    11161 tgccagaaac gcgtagcggg ttctttcttt aacacctttt cctcttcttg ctgacgatcg
    11221 atccagttaa ttcgtcccca gcgatccagc cgcagttgcc aggccgcatc gcgttggctc
    11281 tgcgtaaaac gcttatgaat aagcgtcgcc agcgtttcac tttcaatgac aaagcccatt
    11341 tcggtattta aaagcgttga acggggatca aaattaagcg acccgataaa caccttacta
    11401 ccatcaatac tgaacgtttt agcatgtaag ctggaacctg agttcccggt gagtccgcga
    11461 tcatgtacgg cggtttcatg ttcgcgggtc ggtttcagtt cgtagagctc cacgccatag
    11521 cgcagtaatt tcttgcgcca gcgcgcgtac cctgcgtgaa cgaccgccac atcgttggcc
    11581 gccagagagt tagttaagat ggcgatcttc acacctttcc tgaccagatt aagcaactgc
    11641 gccacgcctg cgcgcgtagg gacaaagtaa gcggaaataa tgtcgatacg ctccgtcggc
    11701 gaccccatca cgtcaaataa tcgctgcgga agaagcgaat ggcgctgcgc cttcccctcg
    11761 cctttagaag ggtcatcgct aagcaagcgt gtttttgccc aaatcagcgg caacgttccg
    11821 cgatcgagat ccgccataaa ctggctggtt tccagcttat gcagataacg gcgggtgatc
    11881 tcatcgttat accaggattc gggaagttcg atacgctgcg tcagttcctg ctcagaaagg
    11941 gataatactt gctgcaatgt cgacactgaa ctacagcgcc agtaacgttc aaaatcattg
    12001 gcgacatcat tgaccaccgg gccaatggcc atcacgtcca gatcggaaaa tagcggctcc
    12061 tcgccagcgc cgaaataggc atcgccgatg ttgcgcccac cgaccagcgt cactacgccg
    12121 tcggcagtgt aacttttatt gtgcatccgc cgattcagcc gcgcaaaatc cgtcaaatat
    12181 cccagcgcgc gtagcgtacg aaaagagaaa ggattaaaca gacgaacttc gatattagga
    12241 tggctatcca gcaagcgcaa cgtatcatcc agaccaggcg tattgttatc atccagcagc
    12301 agacgaacat gaacgccgcg cttcgccgcc gacagcagaa ccgaaaagag cagccgcccg
    12361 gacatatcgt cttcccaaat ataatactgc acatccagcg tccgcgccgc catttcggtc
    12421 aggcggtagc gggcggcaaa agcgtccaga ctgttatcca gcgcaagaat gccgcactct
    12481 ccgggatggc gcgcgcatag cggttcaacg gcacgctcca ggcgtgtttt atcaggcagg
    12541 gtcgtcgcct tgctgagtaa gtaatcttgc gtaaagccgg gcagtttctt catcataaca
    12601 gacaaagtat acctgttcag gcagagcgta acgggtaata aaatctgaaa ccgtcctgac
    12661 ggcgacttca gcggcctggg cgcgtggata gccataaacg ccggtactga ttgccggaaa
    12721 agcgatggaa cgaaagtgat tcgcctcggc aagcagcaaa caattccggt atgcctcttc
    12781 gagtagctca gcttcctggt gttcgccgcc tcgccagacg ggccccactg tgtgaataac
    12841 cgcctttgcc gaaagcttgc cagcaggcgt gataaccgca tgtcccgtct gacattcgcc
    12901 ctgttgctga cggatgagtt tacaggcgtc cagcaatgcc ggccccgccg cgcgatgaat
    12961 tgcgccgtct acgccaccgc cgcccattaa tgatgcgtta gcggcattca caatcgcatc
    13021 gacgctaagt tgagtgatat caccctgtat gacctgaaga cgtgatgtca taaccccccc
    13081 cttttgtctc accttatctg caaagtgtac agcagggctt tcaacagagt cgctcttttt
    13141 atatctatga caccgccgtt aacggtactc aatattcatc accgccaggc ttttttgcgc
    13201 atcgagataa tgcagccgta ccgtcgcaat ggactgaata tcctgcggta atccagatgc
    13261 ctgccgaagg tctatccggt gcatttgctt tttaccttcg cgtaggcagg ttaaatcaat
    13321 attttcggcg tgagtagaaa tatcgcacag tggctcaaca atcgcgccgc gaaaatggat
    13381 aacgccgccc tgtaccgttt gttgccctac cgcagaatgg ataaaaaaag cgcagataca
    13441 caggcctatg gcagggatat ttttcttgat tacggacatg ttaactcctc aatgattagt
    13501 catcctcgag ggttcggcgt taccttttag cgacatgccg agacgatgag acgcttttat
    13561 cgcctcttta atacccaggt cagccaatcc atttccgcca ccatcaaaaa ctactgtgca
    13621 gaaggcggcc attgttgtga taaatgcagt gattgtccgt ccgaaacagt aacaataatt
    13681 ttaaccgagt cctctgaaga tatatttaca ctaagacgag acaactcaat cggttgatta
    13741 gcaggtaaag atagcgtttg tttttgctgt gtatggcttt gtcccccgac gccgtcgcgc
    13801 acagagagaa tttgcaccag acagacgcag ggttcgttta atgtgacctg agggatcacc
    13861 gtgtaaatat cgccttgctg agtcgtggta aacgtaatct gatttgaaag tgcggcaagg
    13921 agcaataaag tatgcataat ttcctcccga aaaaaaacag ggcttacgcc ctgttttttt
    13981 attagcgcag acgctaaatt aatactggtt agccgtggcg ttgttgccaa aaccaacctg
    14041 acgcaccatt acgctggaat cagatgcggt ctgattaacc agcgcggcgt tattaccgcc
    14101 gtattgaccg acagtaatat cggagttttt agcgttccac tggtcgatgg tggcattgtt
    14161 tctgaaacca ttctgagtca gttcaatagt actgttatcc gcaccctggc ctacatcggc
    14221 gccgttacca taaccgctct gggtaatggt cgtttcagat ttacgggcat cgctttgcag
    14281 agcaagcgca gcgttagcgg aaccgtactg ataaatgctc aacgtggaat ccggcccgga
    14341 actattgccg ccgccgttat gattaccgcc gccgccccat tgtggaacga cgccagccag
    14401 agcactgcca gaaactacga ttgctgcgaa tgctgccact tttaaaagtt tcatggtaaa
    14461 acccccatcg gattgattta aaagtcgtaa cggtattagc gttgggtgac gcgaatagcc
    14521 atatgcgact gtttctgcac tacaactgct gttttctgcg taccgtactg ggtaatattg
    14581 gccttatttc cagaaccttt ctggataata gccgcactat taccgtaagc gctttgcgat
    14641 atactggcat cgttggcatt gcccgtttgc tcaatatacg caaagttata attccctgcc
    14701 tggtcgactt tcgcccgatt attttctcct tcttgtgaaa taacggacaa tagttttgat
    14761 ccttcctggc gtactctggc actattatcc gtgccgactt gaccaataat ggccgcctga
    14821 ttaaatgaag acttgcttaa ttcatttacc gcaaaattat actctgaacg agccagatca
    14881 taatttgtcg cggttgcaat cccaggcgca cccagtattg tcaacatcat aaataacaat
    14941 ttgtttttca tgctgtcacc ctggacctgg tcgtacatag cgaaaattat ctattacctt
    15001 gttagcgaca tgcgtttttt gttaacgcgt cgttacgatg aagagtatgt ccgtggaaac
    15061 atttttaata actcacccac gcgtggtatt ttgttattta agctcatacc aaagtgctaa
    15121 taaaacgata gccatgtgat tttttataat tgatttttgg ccacagaaga tagtgtatcg
    15181 cgcacctaaa aaatgaagtg ttggtgtgtg ttatgccgcc atggggatgt tcttatgctt
    15241 cccatggggg gcaatacgca caagacgtga cacactt
//
LOCUS       DAJVSD010000092        15273 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.092, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000092 DAJVSD010000000
VERSION     DAJVSD010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 15273)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15273)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15273
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.092"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            1..831
                     /locus_tag="OQP62_002320"
     CDS             1..831
                     /locus_tag="OQP62_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001307281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose bisphosphate family class II aldolase"
                     /protein_id="HCS1721859.1"
                     /translation="MLQKAQHAGYAVPAFNIHNLETLQVVVETAAEMRSPLIVAGTPG
                     TFSYAGMGNIVAIAGDLAREYNLPLAIHLDHHESLADIESKVMAGIRSVMIDGSHFPF
                     EENVALVKSVVDFCHRYDTSVEAELGRLGGIEDDLVVDSKDALYTNPQQAREFVARTG
                     IDSLAVAIGTAHGMYAAEPKLDFERLAEIRALVDIPLVLHGASGLPESDIRQAISLGV
                     CKVNVATELKIAFSDALKEYFLQNPKANDPRHYMQPAKQAMKEVVRKVIHVCGCEGQL
                     "
     gene            842..1756
                     /gene="pfkB"
                     /locus_tag="OQP62_002321"
     CDS             842..1756
                     /gene="pfkB"
                     /locus_tag="OQP62_002321"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HCS1721860.1"
                     /translation="MIYTLTLNSAIDMNIFSDPLQPNIVNRTHHTEFCPNGKGVNVAL
                     VLDHFQIPAHILGIFGGFTGHYIVESLRTRKMPVTPAWVEEPTRINIFIHDGKQEYKL
                     VNPGSYIPDECKKQIITIISQLPDAEYLVISGSLPQGIESRFYAEIMHICQQKNIGVI
                     LDISHPSLRQLLEFKPLLIKPNDEEVKAIFGLTVSDDNDAKNTLTTLHALGAQNVLLT
                     LGAKGMYFSNGIDYWFCSAPTVDLVSSACAGDAALAAFLSQWLSTGEVEYALSLASAT
                     GADVASSAGLGQLAAIETLLSQIHVRKL"
     gene            1783..3210
                     /locus_tag="OQP62_002322"
     CDS             1783..3210
                     /locus_tag="OQP62_002322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HCS1721861.1"
                     /translation="MKKIIAVTGCPTGIAHTFMAEEALKNAAKKLSVEIKVETNGASG
                     VENAIQPADLVDIAGVIIAADKDVLPDRFNGLPVIEVPVKEAIHHPAELINKVINGEA
                     PIRKGESTTSTEIIEKESLGRQIYKHLMSGVSNMLPFVVAGGILIAVSLLWGIYSADP
                     NSAEYNATAAMLMKIGQQAFSIMVPVFTAYIAFSISGRPGMVAGFVGGLLANTTGAGF
                     LGGIIAGFAAGYLMLWVKNRLEGLPRQYEGLKSIFIMPLIGVLVIGVLMSLLGQPVAA
                     INNSMMNWLASLQEANPILLGIVVGAMCSFDFGGPVNKAAYVTGTLLLGQGNFYFMAG
                     VSAACITPPLVIALATTFFPKGFSEEERAAGMVNYILGCTHITEGAIPFAAKDPLRVI
                     PMMMIASSISAVLSYSLRIQVPAPHGGFLILPLVSQPLAWVLCILAGSACGAMMLGLW
                     RLWAVRKNSVNTTPVAKAGGQNAAL"
     gene            3197..4003
                     /locus_tag="OQP62_002323"
     CDS             3197..4003
                     /locus_tag="OQP62_002323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HCS1721862.1"
                     /translation="MQLCEHDIFISDERLDKVTALHRVVEKLSAAGNTTPDYLRGMLD
                     REAQISTYLGNGIAIPHGTPESRDAVLQTGVKVIVFRHGVDWGDGNTAYLVTGIAARS
                     NEHLEILRQLTRVLSDDAILQALAKAESPSQVLALLTGSTTNTPAAMELHEGEQATFV
                     IHNPHGLHARPSAVLVKFIKQFQSHITVENLDNASGPVDGKNLMRVVSLGAKKGHRLL
                     FRAQGEDAQQALREIGELIASGAGEMITVPVTPPPEVMQPKRSWLSRLFN"
     gene            4201..5472
                     /gene="gatZ"
                     /locus_tag="OQP62_002324"
                     /pseudo
     CDS             4201..5472
                     /gene="gatZ"
                     /locus_tag="OQP62_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462170.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase subunit GatZ"
     gene            5487..5951
                     /gene="gatA"
                     /locus_tag="OQP62_002325"
     CDS             5487..5951
                     /gene="gatA"
                     /locus_tag="OQP62_002325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIA"
                     /protein_id="HCS1721863.1"
                     /translation="MSQLFVRTGITFDSSQQALAHIGKEMLAKGVVHDSYPQALVERE
                     ASFPTGIALERHAVAIPHCEAVHAKSPAIYLIRPDKPVMFQQADDDEEIAVSLIIALI
                     VENPAAQLKLLRRLFGALQIPDTIEALLSAPDAELASCFEHKVLTAEQCVQV"
     gene            5982..6266
                     /gene="gatB"
                     /locus_tag="OQP62_002326"
     CDS             5982..6266
                     /gene="gatB"
                     /locus_tag="OQP62_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIB"
                     /protein_id="HCS1721864.1"
                     /translation="MKRKVIVACGGAVATSTMAAEEIKELCDANHIELDLVQCRVTEI
                     ETYMDGADLICTTARVDRAFGDIPVVHGMPFVSGVGIEALQQKILSILMG"
     gene            6270..7643
                     /locus_tag="OQP62_002327"
     CDS             6270..7643
                     /locus_tag="OQP62_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HCS1721865.1"
                     /translation="MFSEIMRYILDLGPTVMLPLVIIVFSKLLGMKLGDCFKSGLHIG
                     IGFVGIGLVIGLMLDSIGPAAKAMAEHFQINLHVIDVGWPGSSPMTWASQIALVAIPV
                     AIGVNVLMLVTRMTRVVNVDIWNIWHMTFTGAMLHLATGSYWLGILGVVVHAAFVYKL
                     GDWFAKDTRDYFGLEGIAIPHGSSAYLSPVAVLVDTIIEKIPGLNRIHFSADDVQKRF
                     GPFGEPVTVGFVMGLVIGVLAGYDTKAVLQLAVKTAAVMLLMPRVIKPIMDGLTPIAK
                     HARKRLQAKFGGQEFLIGLDPALLLGHTSVVSASLIFIPLTILIAVLVPGNQVLPFGD
                     LATIGFFIAMAVAVHQGNLFRTLISGVIIMGITLWIATQTIGLHTQLAANAGALKAGA
                     QVASLDQGGSPITWLLIQLFTWQNIVGFAVIAIIYLAGVLLTWRRARQFVAAEKATAL
                     QQSQIAS"
     gene            7687..8730
                     /gene="gatD"
                     /locus_tag="OQP62_002328"
     CDS             7687..8730
                     /gene="gatD"
                     /locus_tag="OQP62_002328"
                     /EC_number="1.1.1.251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HCS1721866.1"
                     /translation="MKSVVIHAEGDVRVEERPLPQLQAEDDVLVKVVSSGLCGSDIPR
                     IFAQGAHYYPITLGHEFSGYVESYGTGVTDMQPGDAVACVPLLPCFHCPQCERGYFSL
                     CKQYQFVGSRSEGGNAEYVVVKRANLFRLPSDMPIEDGAFIEPITVGLHAFHLAQGCE
                     GKNVIIVGAGTIGLLALQCARELGARSVTAIDINPQKLELAKALGATHTCNSREMTAD
                     DIQTALSDIQFDQLVLETAGTPQTVSLAIDITGPRAQLALVGTLHHDLTLTTRTFGLI
                     LRKELTLLGSWMNYSAPWPGEEWETAARLLAEKRLQLTPLIAHRGDAESFAEAVKALN
                     GAPMQGKILLQLS"
     gene            8841..9614
                     /locus_tag="OQP62_002329"
     CDS             8841..9614
                     /locus_tag="OQP62_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1721867.1"
                     /translation="MNSFERRNKIVDLINTQGSVLVMDLSNTFGISEVTIRADLRLLE
                     EKGLVTRFHGGAAKPGSHLAEGDNQEVILEDRYQLASDPKKRIAQAAAAMVEEGMTII
                     LDSGSTTLLIAEALARKSNITVITNSLPAAFTLSENKDLTLVVCGGTVRHKTHSMHGT
                     IAERSLHGISADVMFVGADGIDATNGITTFNEGYSISGVMAAAAHKVIAVLDATKFNR
                     RGFNQVLPMDKIDCVITDDTISKQDKAALAKTGVELMIV"
     gene            complement(9772..10635)
                     /gene="rsmI"
                     /locus_tag="OQP62_002330"
     CDS             complement(9772..10635)
                     /gene="rsmI"
                     /locus_tag="OQP62_002330"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HCS1721868.1"
                     /translation="MKQNESADNSQGQLFIVPTPIGNLADITQRALEVLQAVDLIAAE
                     DTRHTGLLLQHFGINARLFALHDHNEQQKAETLVAKLKEGQNIALVSDAGTPLINDPG
                     YHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIE
                     AEPRTLIFYESTHRLLDSLEDMVAVWGESRYVVLARELTKTWETIHGAPVGELLAWVK
                     EDENRRKGEMVLIVEGHKAQEDDLPADALRTLALLQAELPLKKAAALAAEIHGVKKNA
                     LYKYALAQQEE"
     gene            10699..12750
                     /locus_tag="OQP62_002331"
     CDS             10699..12750
                     /locus_tag="OQP62_002331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator"
                     /protein_id="HCS1721869.1"
                     /translation="MVPSTFSRLNAARALPVVLAALLFAGCGTQAPDQSAAYMQGSAQ
                     ADSAFYLHQMQQSADDSKTNWQLLAIHALLKEGKSQQAVELFNQPPQNLNDTQRREQS
                     LLAVEIKLAQKDVAGAQALLDKLKPADFAPHQQARYWQAQIVASQGRPSLTLLRALIA
                     QEPLLAAKEKQKNIDATWQALSAMTPDQARTLVINADENVLQGWLDLQRVWFDNRNDP
                     DMLKAGIADWQKRYPQNPGAKMLPTQLVNVQRFKPASTSKIALLLPLNGQAAVFGRTI
                     QQGFEAAKNLGTQAVEMQPVAAPDAPVEPSVEETQPQMTNGVASPSQASVRDLTDDAP
                     SQSATPVSAPQTPPAQPATASAPADPSAELKIYDTSSQPLDQVLAQVQQDGASIVVGP
                     LLKNNVEALMKSNTPLNVLALNQPETVRSFPNICYFALSPEDEARDAAHHIYEQGKQS
                     PLLLIPRSALGDRVANAFTQEWQKLGGGIVLQQKFGSVAELKMGVNGGAGIALTGSPV
                     AASVPAQPGVTIGGLTIPAPPTDAQITGGGRVDAVYILATPEEIGFIKPMIAMRNGTQ
                     SGATLYASSRSAQGTSGPDFRLEMEGLQYSEIPMLAGGNTPLMQQALSAVHNDYSLAR
                     MYAMGVDAWTLANHFSQMRQVQGFEINGNTGALTASPDCVINRKLSWLKYQQGEIVPA
                     S"
     gene            12708..13103
                     /locus_tag="OQP62_002332"
     CDS             12708..13103
                     /locus_tag="OQP62_002332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HCS1721870.1"
                     /translation="MAQIPARGDCSRQLTRKQAGDAWEAAARLWLESKGLRFIAANVR
                     ERGGEIDLIMRDGKTTVFVEVRYRRSGLYGGAAASVTRSKQHKLLHTARLWLARQNGS
                     FDTVDCRFDVLAFTGNEIEWFRDAFNDHS"
     gene            13125..13715
                     /gene="diaA"
                     /locus_tag="OQP62_002333"
     CDS             13125..13715
                     /gene="diaA"
                     /locus_tag="OQP62_002333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA initiator-associating protein DiaA"
                     /protein_id="HCS1721871.1"
                     /translation="MLERIKVCFTESIQTQIAAAEALPDAISRAAMTLVHSLLNGNKI
                     LCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQ
                     VRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVE
                     IRIPSHHSARIQEMHMLTVNCLCGLIDNTLFPHQDD"
     gene            13725..14300
                     /gene="yraP"
                     /locus_tag="OQP62_002334"
     CDS             13725..14300
                     /gene="yraP"
                     /locus_tag="OQP62_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divisome-associated lipoprotein YraP"
                     /protein_id="HCS1721872.1"
                     /translation="MKAFSPLAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQ
                     VDDGTLELRVSSALSKDEQIKKETRINVTAYQGKVLLVGQSPNSELSARAKQIAMGVE
                     GTTEVYNEIRQGQPIGLGTASNDTWITTKVRSQLLTSDQVKSSNVKVTTENGEVFLLG
                     LVTEREGKAAADIASRVSGVKRVTTAFTYIK"
     gene            complement(14367..15002)
                     /locus_tag="OQP62_002335"
     CDS             complement(14367..15002)
                     /locus_tag="OQP62_002335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000084527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HCS1721873.1"
                     /translation="MSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGV
                     YNPHDPQLTDALAQVTDPVDIVFCCLGTTRREAGSKAAFIHADYTLVVDTALTGRRLG
                     AQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNE
                     TLFAPLFRLLPGNWKSIDARDVARAMLAEALEPAQEGVTILTSSQLREKAG"
     gene            15133..>15273
                     /locus_tag="OQP62_002336"
     CDS             15133..>15273
                     /locus_tag="OQP62_002336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HCS1721874.1"
                     /translation="MSKKIAVLITDEFEDSEFTSPAAEFRQAGHEVITIEKEAGKTVK
                     GKK"
BASE COUNT         3663 a         3992 c         4023 g         3595 t
ORIGIN      
        1 atgctccaga aggcccagca tgcaggctat gccgtgccag cctttaacat ccataaccta
       61 gaaaccttgc aggtggtggt agaaaccgcc gcagaaatgc gctcaccgct gatcgttgcc
      121 ggaacaccag gcacgtttag ctatgccgga atgggtaaca ttgtggcgat cgcgggcgat
      181 ctggctcgtg aatacaatct gccactggcc attcatctgg atcatcatga atcgttagcc
      241 gatattgaaa gcaaagttat ggcagggatc cgttcagtca tgatcgatgg ttcccacttt
      301 ccctttgaag agaatgtggc gctggtgaaa agcgtggtcg atttttgcca tcgctacgac
      361 accagcgtgg aggcagaact gggccgcctt ggtgggatcg aagatgattt agtggtagac
      421 agcaaagatg ccctttacac caatccacag caagcacgtg agtttgtggc gcgcaccggc
      481 attgattcgc tggcggttgc tatcggcacg gcacacggta tgtatgccgc tgaacctaaa
      541 cttgattttg agcgactggc agaaatacgc gctctggtgg atatccctct ggtattgcat
      601 ggggcatctg gtttgccgga aagcgatatt cgccaggcca tcagccttgg ggtatgcaaa
      661 gtcaatgtcg ccaccgaact gaaaatcgcc ttctccgacg ccttaaaaga gtatttccta
      721 caaaacccga aagccaatga tccccgccac tatatgcaac cagcaaaaca ggcgatgaaa
      781 gaggtggtac gcaaagtaat tcatgtttgc ggctgtgaag ggcaactgtg aggaatcgcc
      841 tgtgatctac acgctaacac ttaatagcgc gattgatatg aatatattta gcgatccttt
      901 acagccaaat attgtcaatc gcactcacca caccgagttt tgcccaaatg gtaaaggggt
      961 aaatgttgcg ctggttctgg atcactttca aatacctgcg catatattag gcatttttgg
     1021 tggtttcacc gggcattata ttgtagaaag cctgcgtacc cgaaaaatgc cagtcacacc
     1081 agcatgggta gaagaaccca cgcggattaa tattttcatt catgacggca agcaggaata
     1141 taaactggtc aaccctggct catatattcc agatgaatgt aaaaaacaaa ttatcacgat
     1201 tatttcgcaa ctgcccgatg cagaatatct ggtgataagc ggcagcctgc cacaaggtat
     1261 tgaaagtcgc ttttacgcag aaattatgca tatttgtcag caaaaaaata tcggcgtaat
     1321 tttagatatt agtcatccgt cattacgtca gttactggag ttcaaaccgt tattaattaa
     1381 accaaatgat gaagaggtta aagcaatatt cggtttaact gtctctgacg acaatgatgc
     1441 gaaaaatact ctaaccactt tacatgcact tggtgcacaa aatgttctgc taacccttgg
     1501 cgctaaagga atgtatttct ccaatgggat tgattactgg ttttgtagcg cgccaacggt
     1561 tgatttggtg agctccgcct gtgcaggcga tgctgcactg gccgcctttc tcagccagtg
     1621 gttatctaca ggagaagtgg aatatgcctt atctcttgcc agtgcaacag gagctgatgt
     1681 cgcaagttct gccggactag gccaacttgc ggcaatagaa accttacttt cgcaaatcca
     1741 cgtcagaaag ctgtaggtta aattacaata taagttctgc ttatgaaaaa gatcattgca
     1801 gtgaccggct gccctaccgg tattgcgcat acatttatgg ctgaagaagc cttaaaaaat
     1861 gccgcgaaaa aattatctgt tgaaataaaa gttgaaacca atggtgccag cggtgttgaa
     1921 aatgccattc aacctgctga tctggtagat attgccggag tcattattgc ggcggataaa
     1981 gatgtcttac ctgatcgctt taatggttta ccggttattg aagtaccggt aaaagaagca
     2041 atccatcatc ctgcggagct gattaacaaa gttattaatg gtgaagcccc aatacgtaaa
     2101 ggcgaatcaa ccaccagcac ggaaattatc gaaaaagaat cactggggcg acaaatttat
     2161 aagcacctga tgagtggtgt ttcaaatatg ctaccttttg tagttgccgg aggcatatta
     2221 attgcggtgt cgcttttatg ggggatttat tccgctgatc ctaattcagc tgaatacaat
     2281 gcaaccgccg caatgctaat gaaaatcggt cagcaagcct tttcgattat ggttccggtc
     2341 tttaccgctt atattgcatt ctctatttct ggcagaccag ggatggtggc tgggtttgtc
     2401 ggcggcttac tggcaaatac taccggagca ggatttctcg gtgggataat tgccggattc
     2461 gccgccggtt acctgatgtt atgggtaaag aatcgactcg aaggcttacc gcgtcagtat
     2521 gaaggcctga aatcgatttt tattatgccg ctcattggcg tactggttat tggcgtgttg
     2581 atgtcgctgc ttgggcaacc tgtcgcagct atcaataata gcatgatgaa ctggctggca
     2641 tcgctacagg aagcgaatcc aatattgctg ggtattgtgg tgggtgcaat gtgctctttt
     2701 gactttggcg gcccggtaaa caaagccgct tatgtcaccg gcacgctttt actgggccag
     2761 ggcaacttct actttatggc tggtgtgtct gccgcatgta ttactccacc actggtaatt
     2821 gctctggcga ccaccttctt tccaaaaggt tttagcgagg aagaacgtgc cgcaggcatg
     2881 gttaactata tcctcggttg tacacacatc actgaaggcg cgattccttt cgcagcgaaa
     2941 gatcctttgc gtgtcatccc gatgatgatg attgcttcca gcatttccgc agtacttagc
     3001 tacagcttgc gtattcaggt tccggctcct cacggcggct tcttaatttt acctttggtg
     3061 agtcagccgc tggcctgggt gttatgtatc cttgcgggat ctgcatgtgg tgcgatgatg
     3121 cttggcctat ggagattgtg ggctgtgcgc aaaaattcag tcaacacaac tcctgtagca
     3181 aaggctggag gtcagaatgc agctctgtga acacgatatt tttatcagcg atgagcgcct
     3241 cgataaagtc accgctctgc accgcgtggt ggaaaagtta tctgcggctg gcaataccac
     3301 gcctgactat ttacgcggca tgttggatcg cgaagcacag atttccactt atctgggaaa
     3361 tggaatcgcg atcccacacg gtacgccaga atctcgcgat gcggtattac aaaccggtgt
     3421 aaaggtaatc gtttttcgcc acggcgttga ctggggtgac ggcaataccg cgtatctggt
     3481 caccggaatt gccgcgcgct ccaatgaaca tcttgagatt ttgcgccaac tgactcgcgt
     3541 gctcagcgat gacgctattc tgcaagcact ggctaaagcc gaatccccca gtcaggtttt
     3601 agcgctactg actggctcga cgaccaatac gccagcagcc atggagttgc acgagggtga
     3661 gcaggcaaca tttgtcatcc ataatccgca tggtttacat gccagaccca gtgcggtact
     3721 ggtgaagttt atcaaacagt ttcaaagcca cattacggta gaaaatctgg ataacgcctc
     3781 cggcccggtg gacggaaaaa acctgatgcg agtggtgtcg ctcggcgcga aaaaggggca
     3841 tcgcttgttg ttccgggcgc agggcgaaga tgcacagcag gcactacgtg aaatcgggga
     3901 gcttatcgcc tctggtgcag gcgagatgat caccgttccc gttaccccac caccagaagt
     3961 catgcagcca aagcgcagtt ggctatctcg attgtttaat tagccttcat ttgttcctcc
     4021 gtgcccgctc cggcgggtac ggtttttcat gacaaagtga agttacagac attacacacc
     4081 atttcgttac cttacatttt ctttcgcaac tttcatttat cagatcaaaa tcacaaaaca
     4141 acattacgaa agcctataaa ttctttcgaa gaataaaaac gaaagaactc ggagataaaa
     4201 gtgaaagaaa taattgctcg tcataaagca ggagaacatc tgggcatctg ttcagtttgt
     4261 tctgctcatc ccctggttat cgaatcagct ctgcttttcg atctcaatac tgacaacaag
     4321 gtattgattg aagccacatc caatcaggtg aatcagtttg gcggttatac cggaatgaaa
     4381 ccggctgatt ttcgtgattt tatttatggc attgctcagg aagtgggatt tccacgtgag
     4441 cggttgattc ttggtggcga tcatttaggg cctaactgct ggcagaacga accggcagcg
     4501 gcggcaatgg aaaagtcggt tgagttaata aaagcgtatg tcgccgctgg ttttagcaaa
     4561 attcacctgg acgcgtcgat gtcctgcgct gacgacccga caccgttgga tccgatggtc
     4621 gttgcacgcc gtgccgccgt gctttgtaaa gcagcagaag agaccgcaaa cgaagaacaa
     4681 aaatgccatc tgacttatgt catcggcacg gaagtgcccg ttcctggcgg tgaagccagt
     4741 accatcggca gcgttcatgt cacccgcgag gtcgatgctg cccgtacgct ggaaactcac
     4801 caaatcgcgt ttcgtgaatc aggtctggaa gaagcactgt cacgcgtgat cgccattgtg
     4861 gtgcaaccgg gcgttgaatt tgatcatacc cagattattc attatcagcc gcaggcggca
     4921 caggcgctct ccgcatggat caaagaaacg ccgatggtct atgaagcgca ttcgactgat
     4981 taccaaactc gccaggccta ccgcgccctc gttcgcgatc attacgccat tctgaaggtc
     5041 ggccctgcac tcactttcgc cctgcgcgaa gccattttcg cacttgcgca aatggaaaac
     5101 gagctgatct ccccggaaca acgtagccgc gtgatggaag ttatcgatga agtgatgcta
     5161 aacgagccag gctactggaa aaagtactac cgccccacct agagccaggc gatggtcgac
     5221 atccacttta gtttgtctga ccgtattcgc tattactggc cgcacccgcg tattcgtcaa
     5281 agcgtagaga agttaatcgc caatctgaat aacgtcacat tgccgctggg attaattagc
     5341 cagtttatgc ccgtacagtt tgaacgcctg tctgagggcg tgctcacccc cacgccgcat
     5401 aacctgatta ttgacaaaat tcaggatgtt ctgcgcgctt atcgcttcgg ttgcacgccg
     5461 gatgtcgcct gaatagtgga gaatttatga gccaattatt tgtccgaacc ggaatcacat
     5521 tcgactcgag ccaacaggcg ctggcgcaca ttggcaaaga gatgctggcg aaaggcgtgg
     5581 tacatgatag ttatccgcag gcactggtgg aacgtgaagc gtcctttccc accggcattg
     5641 cgctggagcg ccacgccgtc gctatccctc attgcgaggc agttcatgcg aaatcacccg
     5701 ctatctatct gattcgtcca gataagccgg tcatgtttca acaggcggat gatgacgaag
     5761 agattgccgt ttcgttaatc atcgccttaa tcgttgaaaa cccggcggca cagctaaaac
     5821 ttctgcgccg tctgttcggg gcattacaaa tcccggacac catagaagcc ttactgagcg
     5881 ccccggatgc cgaactggcg tcgtgctttg agcacaaagt ccttacggct gagcagtgcg
     5941 tccaggttta ataataaatt gataataatg aggaataccc tatgaaacgt aaagtaattg
     6001 tggcctgtgg cggtgcggtt gcaacctcaa cgatggctgc ggaagaaatt aaagagctat
     6061 gtgatgccaa ccatattgag ctcgacttag tgcaatgccg ggtcaccgaa atcgaaacct
     6121 atatggacgg cgccgatctt atctgtacca ctgccagggt cgatcgcgcc tttggcgata
     6181 ttcccgtcgt tcacggtatg ccttttgttt ccggcgtggg tattgaagca ttacagcaaa
     6241 aaattctgtc cattctcatg gggtaacgta tgtttagcga aataatgcgt tatatcctcg
     6301 acttaggccc aacggtgatg ttgcctctgg tgatcatcgt gttctctaaa ctgctgggaa
     6361 tgaagcttgg ggattgtttt aaatcgggtt tgcatattgg tatcggcttc gtgggtattg
     6421 gtctggtcat cggcctgatg ctggattcta tcggccccgc ggcgaaagcc atggcggaac
     6481 atttccaaat caatctccac gttattgacg tcggctggcc gggttcatcg cccatgacct
     6541 gggcgtcaca aatcgcgctg gtcgcgatcc ctgtcgccat cggggttaac gtcctgatgc
     6601 tggtgacccg catgacccgc gtggtgaatg tcgatatctg gaatatctgg cacatgacct
     6661 tcacgggcgc catgctgcat ctggcgaccg gttcatactg gctggggatt ctgggcgttg
     6721 tggttcatgc cgcctttgtc tacaaactgg gggactggtt tgccaaagat acccgcgact
     6781 attttggcct cgaggggatt gctatcccac acggctcatc cgcgtacctg agccccgtgg
     6841 cggtgctcgt tgataccatt atcgagaaaa ttccgggtct caatcgtatt cactttagcg
     6901 cagacgatgt ccagaaacgc ttcggaccgt ttggcgagcc ggtgactgtc ggcttcgtga
     6961 tggggctggt gattggtgta ctggcaggct acgacaccaa agccgttctg caactggcag
     7021 tcaaaaccgc agcggtgatg ctgcttatgc cacgcgtcat taaacctatt atggatggcc
     7081 taacgcctat cgccaaacat gcgcgtaaac gtctacaggc caaatttggc gggcaggagt
     7141 tcctgatagg ccttgatcca gcgctactgc tcggtcatac ctctgttgtc tccgcgagcc
     7201 tgatattcat tccgctgacc atcctgattg ccgtcttagt accggggaac caggtgctgc
     7261 cgttcggcga cctcgccacc atcggtttct ttattgcgat ggcggttgcg gtacaccagg
     7321 gcaacctgtt ccgcacgctg atttcaggtg tcattattat gggtatcacc ctgtggatag
     7381 ccacgcagac gattggcctg catacccaac tggctgccaa tgccggagcg ctaaaagctg
     7441 gcgcacaagt cgcctcgctg gatcagggcg gttctcccat cacctggctg ctgattcaac
     7501 tttttacctg gcagaatatc gtcggcttcg ccgtcattgc cattatctat ctggccggcg
     7561 tactgctgac ctggcgtcgc gcccgacagt ttgtcgcggc tgagaaagcc acggcgctac
     7621 agcaaagtca aatcgcctct taattttagg ggagcaatcg ctcccctcac cttcctggag
     7681 aatgttatga aatcagtggt tattcacgct gagggagacg tgcgcgttga agaacgtccc
     7741 ttaccacaac tgcaagccga ggacgatgtg ttggtcaaag tcgttagctc agggctttgc
     7801 gggtcggata tcccgcgtat tttcgcgcag ggcgcccatt attatcctat tacgttaggc
     7861 catgaattca gcggctacgt tgaatcctac ggcacaggcg taacggatat gcagcctggc
     7921 gatgccgtcg cttgtgtccc gcttcttccc tgctttcact gtccgcaatg cgaacgcggt
     7981 tacttttctt tatgcaaaca gtatcagttt gtaggatcgc gcagcgaagg cggtaatgcg
     8041 gaatatgtgg tggtcaaacg ggccaatctt ttccgcttgc cgtctgatat gccgattgaa
     8101 gatggcgcgt ttatcgaacc gattaccgtg ggcttacacg cctttcatct ggcgcagggc
     8161 tgcgagggga aaaacgtaat tatcgtcggg gccgggacaa ttggcctgct ggccttacag
     8221 tgcgcgcggg aactgggcgc gcgaagcgta acggcgattg atatcaatcc gcagaaactg
     8281 gaactggcga aagcgctcgg cgcaacgcat acctgtaata gccgggaaat gaccgccgac
     8341 gacatccaga ccgcgttgtc cgacattcag tttgatcaac tggttctcga aacggcagga
     8401 actccccaga ccgtctcgct ggctatcgat atcaccgggc cgcgcgcgca actggcgctg
     8461 gtggggacgt tacatcacga tctcaccctg acgacgcgta cattcgggtt aattttgcgt
     8521 aaagagctca cgctcctcgg cagttggatg aactactccg cgccatggcc aggagaagaa
     8581 tgggaaaccg cagcgcgcct gttggctgaa aaacgtcttc aactgacccc tctcattgcc
     8641 catcgcggcg atgcggaaag ctttgcagaa gcagtcaaag cgcttaatgg cgcgcccatg
     8701 cagggcaaaa tcttacttca actttcctga tggtacgagc cagcaacctg cgctggctca
     8761 catttccttt cgaaatttag cgttcacctt tcgcaatcct tcgtttaaac tagttacagt
     8821 taattatcag gcaaatcaat atgaactcat ttgagcgaag aaataaaatt gtcgacctga
     8881 ttaatacgca aggcagcgtg ctggtgatgg acctttcaaa tacctttggt atttctgaag
     8941 tgactatccg tgctgacctg cgtctgctgg aagagaaagg ccttgtcacc cgttttcatg
     9001 gcggcgcggc aaaaccggga agtcatctgg cggaaggcga caatcaggaa gtcattctgg
     9061 aagatcggta tcaactcgcc agcgatccga aaaagcggat tgcccaggcg gctgcggcaa
     9121 tggttgaaga aggaatgacc atcattctgg atagcgggag cacaacatta ctaattgcgg
     9181 aagcgctcgc gcgaaaaagc aatattacgg tgatcactaa cagcttgcct gccgctttta
     9241 cgctatcaga aaataaagat ctcacgctgg tggtttgcgg cggtacggta cggcataaaa
     9301 cccactcaat gcacggcacg attgcggaac gatcgctaca cggcatcagc gccgatgtca
     9361 tgtttgtcgg ggcggatggc attgatgcga caaacggtat taccacgttt aacgaaggtt
     9421 attccattag cggcgtcatg gcggcggcgg cgcacaaagt tatcgcggta ctggacgcga
     9481 ccaaatttaa ccgtcgcggc tttaaccagg tattgccgat ggacaagatc gactgtgtga
     9541 taaccgatga caccatcagc aaacaggata aagcggcatt agcgaaaaca ggcgtggaat
     9601 taatgatcgt ctaaaaagga gtcggttatg cattgctgat cgcgagagta agcccaaagg
     9661 aaaggtccgg cccgctatca ccgcccaatg cccccatcac tttacccaca tcaatcacct
     9721 gattgagtat taacgtgatg gcgataaaag gcggttcccg ggcgctcgct tttactcttc
     9781 ctgctgcgcc agcgcatact tatacagcgc atttttcttc acgccgtgaa tttctgctgc
     9841 cagcgccgcc gcttttttca gcggcagctc tgcctgtagc agcgccagcg tgcgcagcgc
     9901 gtcggcgggc aggtcgtctt cttgcgcttt atgcccttcg acaatcagca ccatttcgcc
     9961 tttgcgacgg ttttcatctt ctttgaccca cgccagcagc tcgccgaccg gcgcgccgtg
    10021 aatggtttcc caggttttgg tcagctcacg cgccagcacc acgtaacggg attcgcccca
    10081 cacggccacc atatcttcca ggctatccaa cagacgatgg gtggactcat aaaaaatcag
    10141 cgttcgtggc tccgcttcaa tggcttttag cgcatcacgg cggccttttg atttggcagg
    10201 caggaagcct tcataacaaa aacgatctga tggtaaacct gcggcgctta atgcagtgat
    10261 agcagcacac ggccctggta gcggcaccac gcgaatcccc gcttcacggc aggtacgtac
    10321 caggtgatag ccggggtcat taattagcgg cgttccggca tcggaaacca gagcaatgtt
    10381 ctgcccctct ttcagcttcg cgaccagcgt ttccgctttt tgttgttcgt tatggtcgtg
    10441 cagcgcaaac aaccgggcat taatcccaaa atgttgcagc aataaaccgg tgtgacgagt
    10501 gtcttcagcg gcaattaaat caacggcttg taaaacttcc agcgcgcgtt gggtaatatc
    10561 agccaaattc ccgataggag taggtacaat aaagagttgg ccctgagaat tatccgccga
    10621 ttcgttttgt ttcattgtgt cgtccgtatt gccgatttaa tattgagcat tgcgtaaaaa
    10681 aatatcactg gatacagtat ggtaccctca acattttctc gtttgaacgc cgcgcgcgcg
    10741 ctgcctgtcg tcctggctgc gctacttttc gccgggtgcg gcacccaggc gccagatcaa
    10801 agcgcagcct atatgcaggg ttcagcgcaa gctgattccg ccttttacct gcatcagatg
    10861 cagcaaagcg cagatgatag caagaccaac tggcaattac tcgccattca tgcactgctg
    10921 aaagaaggaa aaagccagca ggccgtcgag ttgttcaatc aacccccgca aaatctgaac
    10981 gatacccagc gtcgcgaaca atctttatta gcggtagaga tcaaactggc gcagaaagat
    11041 gtggcaggcg cgcaggcctt gctggataaa ctaaaacccg ccgactttgc gccacatcag
    11101 caagcgcgtt actggcaggc gcagatcgtt gccagccagg gacgcccgtc gcttaccctg
    11161 ttgcgggcgt taatcgccca ggaaccgcta ctggcggcga aagagaaaca aaaaaatatc
    11221 gacgccacct ggcaggcgct ctccgccatg acgccggatc aggccaggac gttagttatc
    11281 aacgccgatg aaaatgtgct tcagggctgg ctggatctgc aacgcgtctg gtttgacaac
    11341 cgcaacgatc cagacatgct gaaagccggg atcgccgact ggcaaaaacg ctacccgcaa
    11401 aatccggggg cgaaaatgct gccgacgcag ctcgtcaatg tacaacgttt taaaccagct
    11461 tccaccagca aaatcgctct gctgctgccg ctgaacggtc aggctgccgt gtttggccgt
    11521 accatccagc aaggtttcga agccgcgaaa aacctcggca cccaggcggt ggaaatgcag
    11581 cctgtcgccg cgcctgacgc gccggtcgaa ccaagcgtgg aggagacgca accacaaatg
    11641 accaacggcg tcgccagtcc gtcgcaggcc tcggtgagag atctgactga tgacgctcca
    11701 tcccagtctg ctacgccagt cagcgcgcca caaactcccc ctgcgcagcc tgctacagca
    11761 agcgcgccgg cggatccctc cgctgaatta aaaatctacg atacctcttc ccagccgttg
    11821 gatcaggtgc tcgctcaggt tcagcaagac ggcgccagta tcgtggtcgg gccgctgttg
    11881 aaaaacaatg tggaagcgct gatgaaaagc aacacgccgc tcaacgtgct ggcgctcaac
    11941 cagccggaaa cggtacgtag cttccctaat atctgctatt tcgcgctctc tccagaagat
    12001 gaagcccgtg acgcggcgca tcatatttat gagcagggca agcagtcgcc gctgctgttg
    12061 atcccacgca gcgcgcttgg cgatcgcgtg gcgaatgcct tcacccagga gtggcaaaaa
    12121 ctgggcggcg gcatcgtgtt acagcaaaaa ttcggctccg tagccgagct gaaaatgggc
    12181 gtgaacggcg gcgcgggtat cgcgttgacg ggcagtccgg tcgccgccag cgtgcctgcg
    12241 cagccgggcg ttaccattgg cggtctgacc atccctgcgc cgccgaccga cgcgcaaatc
    12301 accggcggcg gacgcgtaga cgcggtctat attctggcta cgccggaaga gattggcttt
    12361 atcaaaccga tgatcgccat gcgtaacggc acccagagcg gcgcgacgct gtatgccagc
    12421 tcccgcagcg cgcaaggcac ctccggccct gacttccgtc tggagatgga aggtttgcaa
    12481 tacagtgaaa ttcccatgct ggcaggcggc aatacgccgt tgatgcagca ggcgctgagt
    12541 gctgtacata acgactattc tctggcgcgg atgtacgcca tgggcgtgga tgcctggacg
    12601 ctggcgaacc acttttcgca gatgcgtcag gtgcaggggt ttgagatcaa tggtaatacc
    12661 ggcgcattaa ccgccagccc ggattgtgtg attaacagga agttatcatg gctcaaatac
    12721 cagcaagggg agattgttcc cgccagctaa cacgtaaaca ggctggcgac gcgtgggaag
    12781 ctgccgcgcg tctctggctg gaaagcaaag gactgcggtt tatcgccgcc aacgtgcgcg
    12841 agcgcggcgg cgaaatcgat ctgatcatgc gcgacggaaa aacgacggtt tttgttgagg
    12901 ttcgctatcg gcgctccggg ctttatggcg gcgcggcggc tagtgtgacc cgcagcaagc
    12961 aacacaaatt attacatact gcccgcttgt ggctcgcccg ccagaatggg agttttgata
    13021 ctgtggattg tcggttcgat gtgttagcct tcaccggaaa tgagattgag tggtttcggg
    13081 atgcgtttaa cgaccactca taattgaaga ttttaaggat tagcgtgctc gaaagaatca
    13141 aagtttgctt tacagaaagc attcaaactc aaattgctgc ggcggaagcg cttccggatg
    13201 ccatttcccg cgccgccatg acgctggttc attccctgct taacggcaac aaaatcctct
    13261 gttgtggaaa cgggacgtcc gcggccaacg cacagcattt tgctgccagc atgattaacc
    13321 gctttgaaac ggagcgaccc agtttacccg ccattgcact aaataccgat aatgtggtct
    13381 taactgcgat cgctaacgat cgcctgcacg atgaagttta tgcaaaacaa gtccgggcgc
    13441 tgggacatgc aggcgatgtt ttattggcga tctctacgcg tggtaatagt cgcgatatcg
    13501 taaaagccgt tgaagcagcc gtcacacgtg acatgaccat tgtggcgcta accgggtatg
    13561 acgggggcga gctggccgga ctattagggc cgcaggatgt tgaaattcgt atcccttcac
    13621 accacagcgc gcgcattcag gaaatgcata tgctgacggt aaactgcctg tgcggtttga
    13681 tcgataacac gctttttcct caccaggatg attaaggagt acacatgaag gcattttcgc
    13741 cgctcgcagt ccttatttct gcgttgctat tgcaaggttg cgtcgccgcc gcggtagtgg
    13801 gtacggcagc cgtcggcacc aaagccgcaa ccgacccgcg tagcgtgggc acccaggtgg
    13861 atgacggaac gctggaactg cgtgtcagca gcgcgctgtc gaaagatgag caaatcaaaa
    13921 aagagacgcg catcaatgtc actgcttatc agggcaaagt tttgttagtg ggccagtcgc
    13981 caaacagcga actctccgca cgcgcgaaac agatagcgat gggcgttgaa ggcaccaccg
    14041 aggtctataa cgagattcgc cagggtcagc ctatcggcct ggggaccgcc tctaacgata
    14101 cctggatcac cacgaaagtt cgctcacagc tactgaccag cgatcaggta aaatcgtcaa
    14161 atgtgaaagt caccaccgag aatggcgaag tgttcctgct gggcctggtg actgaacgtg
    14221 aaggtaaagc ggcagcagac atcgccagcc gggtgagcgg cgtgaaacgc gtgaccaccg
    14281 cctttacgta tattaagtaa ccggtgtgcc gggtggcgat aaaaatgtgt aaatcgcgtc
    14341 gccatccggt aaatcatccg gcttcgctac cccgcttttt cccgcagttg cgatgaggtc
    14401 agaatcgtca cgccttcttg tgctggctcc agcgcttccg ccagcatggc ccgcgccaca
    14461 tcccgcgcat cgatcgattt ccagtttcct ggcagcagcc ggaatagcgg agcgaaaagc
    14521 gtttcattca cccgccgcgt tgttctgtcg ccgagcagca tagaaggccg ggcaatcgtc
    14581 aaacgaggcc aattttgcgc gattaacgcc tcctccattt ctcctttcac ccgattgtag
    14641 aaaaacggag agtgcgcgtt tgctcccatt gcgctgacca ccaacatgtg ctgcgcgccc
    14701 agtcgacgcc cggtcagcgc ggtatcaacc accagcgtat aatccgcatg aataaacgcc
    14761 gctttacttc ccgcttcacg ccgggtcgtg cccaggcagc aaaaaacaat atccaccggg
    14821 tcggtcacct gagctaacgc gtcggtaagc tgcggatcgt gagggttata aacgccgaca
    14881 atatccgtca gcgggcgacg cgttggcgcg gcgatcgcgc tcacctgcgg cgtgttgatt
    14941 aacattctca gcagatgtcc gccgaccagt ccggtcgcgc cggtaatcag tacctgactc
    15001 atcctcgctc ctttacagat ttgtccacct tgcactctcg gccctatcga ccaggcttaa
    15061 tagtctacga ggtaagtatc catcattgtg gaaaatttgc cttacccgac gccaccactg
    15121 cggaggaaac gcatgagtaa gaaaattgcc gttttgatta ccgatgaatt tgaagattca
    15181 gaatttacct cgccggctgc agaattccgt caggccggcc atgaggtcat caccatcgaa
    15241 aaagaggcgg gtaaaacggt gaaaggaaaa aaa
//
LOCUS       DAJVSD010000093        15120 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.093, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000093 DAJVSD010000000
VERSION     DAJVSD010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 15120)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15120)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15120
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.093"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            134..604
                     /locus_tag="OQP62_002337"
     CDS             134..604
                     /locus_tag="OQP62_002337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HCS1721875.1"
                     /translation="MKKQQGYTLIETVVAMSLIIILSATGLYGWQRWQQQQRLWQTAC
                     QVRDYLLQLREDAHWHNRDHILRVVSEGGSWCFVSSVATQTSCTPSSPFVFTPDWRDV
                     VLADITPSLAFFGLRNTAWAGHIVLKNAAGEWRLVVSSWGRIRLCERNEAATCQ"
     gene            595..1158
                     /locus_tag="OQP62_002338"
     CDS             595..1158
                     /locus_tag="OQP62_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HCS1721876.1"
                     /translation="MSITTRGFSLLEVVLAMAIGSILLLGSARFLPALQREIWHNTRQ
                     LSLEDEIWQRTYTVAKHLQRAGYCHGHCIGEGLHLAEQGQCVIVQWDGNNNGVWDTIP
                     AKEADQTGFRMKDNVLETLRGATSCQGKGWEKMTDPNTVLITAFNVERRDITGFSPVL
                     MLHLRGASKAEPQTVIDAQYSVTGFNL"
     gene            1155..1562
                     /locus_tag="OQP62_002339"
     CDS             1155..1562
                     /locus_tag="OQP62_002339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2509 family protein"
                     /protein_id="HCS1721877.1"
                     /translation="MNRERGASSLILALLILILGSLLLQGVNQQQASYAARVTTQSMA
                     IQRQALVQSALEWGRGQLWSGVTEMECRRYSSSGARVCLRRLSGDEVVMAAQDDGMTL
                     WRLGNVIQGSIVFSPHGWSDFCPLKEVALCRIP"
     gene            1547..1867
                     /locus_tag="OQP62_002340"
     CDS             1547..1867
                     /locus_tag="OQP62_002340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HCS1721878.1"
                     /translation="MSHPLNFQRGFSLPEVLVAMVLMVMIVTALSGYQRVLMHTFALR
                     HQYLQIWRQAWQQTALYPFSPADGWNANRMQTTQSGCVSISVTMVSPSGRQGQMTRLH
                     CPNR"
     gene            1883..5254
                     /gene="recC"
                     /locus_tag="OQP62_002341"
     CDS             1883..5254
                     /gene="recC"
                     /locus_tag="OQP62_002341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461913.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HCS1721879.1"
                     /translation="MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQ
                     WLQMTLSQKFGIAANIAFPLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQL
                     LDKDEFVLLRHYLTDDTDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGE
                     AQNWQAPLWKALVEYTAALGQPRWHRANLYQRFIQTLESATACPPGLPSRVFICGISA
                     LPPVYLKALQALGKHIEIHLLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPL
                     FRENQNPEALFNSDGEQDIGNPLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNL
                     LHRIQADILELESHAVAGVNLEEYSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDR
                     LLAMLEADPTLTPRDIIVMVADIDSYSPFIQAVFGSAPTERYLPYAISDRRARQSHPV
                     LQAFISLLSLPDSRFVSEDVLALLDVPVLAARFTINEEGLRYLRLWVNESGIRWGIDD
                     DNVRELELPATGQHTWQFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS
                     LLMQLNIWRRGLAQERPLEEWLPVCRDMLNDFFLPDADTEAAMTLIEQQWQAIIAEGV
                     AAEYGDAVPISLLRDELAQRLDQERISQRFLAGPINICTLMPMRSIPFRVVCLLGMND
                     GVYPRQLAPLGFDLMSQKPMRGDRSRRDDDRYLFLEALISAQQTLYISYIGRSIQDNS
                     ERFPSVLVQELVDYIGQSHYLPGDETLTCDESEARVKAHITRLHTRMPFDAQNYQPGE
                     QQSYAREWLPAASQSGKAHSDFVQPLPFTMPETLTLESLQRFWAHPVRAFFQMRLQVN
                     FRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEEDDAERLFRRFRAAGELPYGAFGE
                     IFWDAQCQEMQQLASRVIACRKPSQSLEVDLLCNGVQLTGWLPQVQEDGLLRWRPALI
                     SVAQGVQLWLEHLVYCASGGSGESRLFLRKEGEWRFPPLDKTQAMAYLAQLIEGYREG
                     MSSPLLVLPESGGAWIKACYDAENDVMLDDDDTLQKARTKFLQAYEGNMMVSGEGEDI
                     WYQRLWRQLESETLQAIIAQSRHYLLPLFRFNQSR"
     gene            5432..8320
                     /gene="ptrA"
                     /locus_tag="OQP62_002342"
     CDS             5432..8320
                     /gene="ptrA"
                     /locus_tag="OQP62_002342"
                     /EC_number="3.4.24.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin"
                     /protein_id="HCS1721880.1"
                     /translation="MPRSTWFKALLLLVALWGPAVQADIGWQPLQETIRKSDKDTRQY
                     QAIRLDNDMVVLLVSDPQAVKSLSALVVPVVSLEDPEAHQGLAHYLEHMCLMGSKKYP
                     QADSLAEYLKRHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAAPLLNKKYAE
                     RERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSHFSGGNLETLSDKPGNPVQQAL
                     IAFHEKYYSSNLMKAVIYSNKPLPELASIAAATYGRVPNKQIKKPEITVPVITEAQKG
                     IIIHYVPALPRKVLRVEFRIDNNSAQFRSKTDELVSYLIGNRSPGTLSDWLQKQGLVE
                     GISADSDPIVNGNSGVFAISATLTDKGLANRDEVVAAIFSYLNTLREKGIDKRYFDEL
                     AHVLDLDFRYPSITRDMDYVEWLADTMIRVPVAHTLDAANIADRYDPAAIKNRLAMMT
                     PQNARIWYISPQEPHNKIAYFVDAPYQVDKISEQTFKNWQQKAQGIALSLPELNPYIP
                     DDFTLIKNDKNYVRPELIVDKADLRVVYAPSRYFASEPKADVSVVLRNPQAMDSARNQ
                     VLFALNDYLAGMALDQLSNQAAVGGISFSTNANNGLMVTANGYTQRLPQLFLALLEGY
                     FSYDATEEQLAQAKSWYTQMMDSAEKGKAYEQAIMPVQMISQVPYFSRDERRALLPSI
                     TLKEVMAYRNALKTGARPEFLVIGNMSEAQATSLAQDVQKQLAANGSAWCRNKDVVVE
                     KKQSVIFEKAGSSTDSALAAVFVPVGYDEYVSAAYSAMLGQIVQPWFYNQLRTEEQLG
                     YAVFAFPMSVGRQWGMGFLLQSNDKQPSYLWQRYQAFFPDAEAKLRAMKPEEFAQIQQ
                     AIITQMRQAPQTLGEEASRLSKDFDRGNMRFDSRDKIIAQIKLLTPQKLADFFHQAVV
                     EPQGMAILSQIAGSQNGKAEYVHPTGWKVWDNVSALQQTLPLMSEKNE"
     gene            8313..11858
                     /gene="recB"
                     /locus_tag="OQP62_002343"
     CDS             8313..11858
                     /gene="recB"
                     /locus_tag="OQP62_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HCS1721881.1"
                     /translation="MNDVAETLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGL
                     GGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSNIHELRIACLRESTDNPLYARLLE
                     EISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESLLR
                     YQACADFWRRHCYPLPRDIAQVVFDVWKGPKALLKDIDRYLQGEAPVIKAPPSQEETL
                     ASRHEQILARINQVKQQWCEAVSELDALIESSGIDRRKFNRGNQAKWIEKITAWAQEE
                     TKNYQLPEALGKFSQRFLAERTKAGGVTPQHPLFVAIDNLLGEPLSIKDLVLTRALSE
                     IRETVAQEKRRRGELGFDDMLSRLDTALRSESGEALAAAIRTRFPVAMIDEFQDTDPQ
                     QYRIFRRIWRHQPDTALLLIGDPKQAIYAFRGADIFTYMKARSEVSAHYTLDTNWRSA
                     PGMVNSVNKLFSQMNDAFMFRDIPFSPVKFAPRNQSLQFKVNDAPQPAMTLWLMEGES
                     CGSGDYQSYMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAAL
                     IRDALTLLAIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLT
                     ALDIETLNNDENAWDAVVEEFDGYRQIWHKRGVMPMLRALMSARNIAENLLATAGGER
                     RLTDILHISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIVT
                     IHKSKGLEYPLVWLPFITHFRVQDQAFYHDRHSYEAVLDLSHAEESIALAEAERLAED
                     LRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGEPMDAAGLRAC
                     IEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVTSYSGLQQRGH
                     SVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDFTQPIDPQW
                     VQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFYLPIAQP
                     LTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWLGE
                     DSAAYTQTAMAAAMQAHRYDLQYQLYTLALHRYLRHRMANYDYERHFGGVIYLFLRGV
                     DSERPQQGIFTTRPAAALINQLDDMFAGEMSEEAQ"
     gene            11855..13690
                     /gene="recD"
                     /locus_tag="OQP62_002344"
     CDS             11855..13690
                     /gene="recD"
                     /locus_tag="OQP62_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HCS1721882.1"
                     /translation="MTIQKRLLEAVEQKLLRPIDAQFALTVAGNDDPAVTLAAALLSH
                     DAGEGHVCLPLSRLTLTEEAHPLLVAWISETATPIDWKKRLLASAAVSCGDSPAPLIL
                     CGDRLYLNRMWCNERTVARFFNEVNQAIAVDEDQLSRILDALFPPTDEVNWQKVAAAV
                     ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGA
                     ALRQLPLTDAQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL
                     PMMSRLIDALPPHGRVIFLGDRDQLASVEAGAVLGDICAYVNAGFTAERARQLSRLTG
                     SAIPAGAGTQAASLRDSLCLLQKSYRFGSDSGIGKLAAAINCGDRSAIQAVFQQGFSD
                     IEKRTLQSSDDYAGMLDEALAGYGRYLRLLHEKAAPEAILQAFNEYQLLCALREGPFG
                     VRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGL
                     RVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEFDHAALILPSQRSPVVTRELV
                     YTAVTRARRRLSLYADERILAGAIVTRTERRSGLATLFDEVSRIG"
     gene            complement(13793..>15120)
                     /gene="argA"
                     /locus_tag="OQP62_002345"
     CDS             complement(13793..>15120)
                     /gene="argA"
                     /locus_tag="OQP62_002345"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HCS1721883.1"
                     /translation="KERKTELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHDNFSSIV
                     SDIGLLHSLGIRLVVVYGARPQIDANLAAHHHEPIYHKNTRVTDAKTLELVKQAAGLL
                     QLDITARLSMSLNNTPLQGAHINVVSGNFTIAQPLGVDDGVDYCHSGRIRRIDEDAIN
                     RQLDNGAIVLMGPVAVSVTGESFNLTSEEIATQLAVKLKAEKMIGFCSSQGVTNSEGG
                     IISELFPNEAQARVEELEAQGDYNSGTVRFLRGAVKACRSGVRRCHLISYQEDGSLLQ
                     ELFSRDGIGTQIVMESAEQIRRATINDIGGILELIRPLEQQGILVRRSREQLEMEIDK
                     FTIIQRDNMTIACAALYPFVEEKIGEMACVAVHPDYRSSSRGEVLLERVAAQARQMGL
                     RKLFVLTTRSIHWFQERGFTPVDIELLPESKKKMYNYQRRSKVLMADLG"
BASE COUNT         3409 a         3852 c         4361 g         3498 t
ORIGIN      
        1 cctttgtctc aatcttcggc gcggattcct gaaattttgc aacgcgctgc aagacatgaa
       61 cttttttccg taacgcgtcg aacaatctgt atttggcgct cgttattttt cttccgcccg
      121 ccatactgcc gacatgaaaa aacaacaggg ctatacgctc attgaaacgg tggtcgcgat
      181 gtcgctcatt atcattctca gcgccacagg actttatggc tggcaacgct ggcagcagca
      241 acagcgcctg tggcaaaccg catgtcaggt gcgggattac ctgctgcaac ttcgtgagga
      301 cgctcactgg cataaccgcg atcacattct tcgcgtggtc agcgaaggcg gttcatggtg
      361 ctttgtcagc tctgttgcta cgcaaacatc gtgtacgcca tcttccccct ttgtgtttac
      421 gcccgactgg cgtgatgtcg tccttgccga tatcacgccg tcgttagcct tctttggcct
      481 gcgcaatacg gcatgggcag ggcacatcgt gctgaaaaac gctgccggag agtggcgtct
      541 ggtcgtctcc tcctgggggc gaatcaggct atgtgagcgt aacgaggccg ccacgtgtca
      601 ataaccacgc gggggttctc gctactggag gttgtgctgg cgatggcgat aggttccatt
      661 ttactgcttg ggtccgcacg atttttaccg gcgttacagc gtgagatctg gcacaacacg
      721 cgacagttat cgctggaaga tgaaatctgg cagcgaacct ataccgtagc gaagcatctt
      781 caacgtgcgg gttactgtca tggccactgt atcggcgaag ggctacatct tgccgaacag
      841 gggcaatgcg tcatcgttca gtgggacggg aataataacg gggtctggga taccataccg
      901 gcgaaagagg ccgaccagac cgggttccgt atgaaggata acgttctgga gacattacgc
      961 ggagcaacat cttgccaggg taagggatgg gaaaaaatga ccgatcccaa tacggtactc
     1021 atcacggcgt ttaacgttga gcgccgggat ataacgggat tctcgccagt gctcatgctg
     1081 catctgcgtg gcgccagcaa agccgagcct cagacggtta ttgacgcgca atatagcgta
     1141 acgggattta atctgtgaat cgggaacgtg gcgcttcttc gctaatactg gcgcttttaa
     1201 tactgattct gggcagtctg ctactgcaag gcgtaaatca gcagcaggcc agctatgccg
     1261 cccgcgtgac gacgcagagc atggcgatac aacgccaggc gctcgtacag tcggcgctgg
     1321 aatgggggcg agggcagcta tggtcaggcg taaccgaaat ggaatgtcgg cgctattcct
     1381 cttcaggagc gagggtctgt ttgcggagat tatcggggga tgaagtggtg atggcggcgc
     1441 aagatgatgg catgacgtta tggcgtttgg gcaacgtcat tcagggaagc attgtctttt
     1501 ctccccacgg ctggagtgat ttttgtccgt taaaagaggt ggcgttatgt cgcatcccct
     1561 gaattttcaa cgcgggttta gcctcccgga agttttagtg gcgatggttc taatggtaat
     1621 gatcgtcacc gcgctgtcag gctatcagcg ggtattaatg cacacttttg cattacgaca
     1681 ccagtatctc cagatctggc ggcaggcgtg gcagcaaacg gcgctgtatc cattttcgcc
     1741 tgctgacggc tggaatgcca accggatgca gacaacgcaa tcgggatgtg tcagcatcag
     1801 cgtcacgatg gtttcaccct ctggcaggca ggggcagatg acgcgcttgc attgtccaaa
     1861 tcgttaatcg tcaggagtaa ttatgttaag ggtctaccac tccaatcgtc tggatgtgct
     1921 ggaagcgttg atggagttca tcgtcgaacg cgagcggctg gatgatccct ttgaaccaga
     1981 aatgattctg gtacaaagca cgggtatggc gcagtggctg cagatgaccc tttcacaaaa
     2041 gtttggtatt gcggcgaata tcgcttttcc gttaccggcg agttttatct gggagatgtt
     2101 tgtccgcgtg ttgccagata tccccaaaga aagcgctttc agcaaacaaa gcatgagctg
     2161 gaaactgatg accttgctgc cgcagttgct ggataaggat gagtttgtac tgctgcgcca
     2221 ttatctgacc gacgacaccg ataaacgcaa actctttcag ctttccgcgc gcgccgccga
     2281 cctgttcgat cagtatctgg tttatcggcc tgactggctt acgcagtggg aggcgggaaa
     2341 aaccgtggaa ggtctgggag aggcgcaaaa ctggcaggcg ccgctgtgga aagcattggt
     2401 ggaatatacc gccgcgctgg ggcagccgcg ctggcatcgc gccaatctct accaacgctt
     2461 tattcaaacg ctggaaagcg cgaccgcctg cccgccaggg ttgccgtccc gcgtttttat
     2521 ttgcggcatt tccgcgttac cgccagtgta tctcaaagca ttgcaggcgc tgggtaaaca
     2581 tattgaaatc catctccttt ttactaatcc gtgtcggtat tactgggggg atataaaaga
     2641 cccagcctgg ctggcaaaac tcatggctcg ccagcgtcgt cacagttttg aagaccgtca
     2701 tttaccgttg ttccgtgaaa atcagaatcc ggaagcctta tttaacagcg acggtgaaca
     2761 ggatatcggt aatccgctac tggcctcatg gggaaaactg ggacgggatt atatctacct
     2821 gctatctgaa ctggaaaaca gccaggagct ggatgcgttt gttgatatta cgccagataa
     2881 tcttttgcat cggattcagg cggatatcct tgaactggaa agccatgcgg tggcgggcgt
     2941 aaatcttgag gagtattcgc gcagcgacaa taagcgtctg ctcgatcccg aggataacag
     3001 cctctctttt cacgtttgtc acagcccgca gcgcgaggtg gaaatactgc acgatcgcct
     3061 gctggcgatg ctggaagccg atccgacgct aacgccgcgc gacattatcg ttatggtggc
     3121 tgatattgac agctatagcc cgtttatcca ggcggtattt ggtagcgcgc caacggagcg
     3181 ctatctgcct tatgctattt ccgatcggcg ggcgcgtcag tcacatccgg tgttacaggc
     3241 atttatcagt ctgctttcgt taccggacag ccgcttcgtc tccgaggatg ttctggcgtt
     3301 gttagacgta ccggtattgg ctgcccgctt tacgatcaac gaagaagggc tgcgttattt
     3361 gcgcttgtgg gtcaatgagt caggcattcg ctgggggatt gacgatgaca acgtgcgcga
     3421 gctggaactt cctgccacgg ggcagcatac atggcaattt ggcctgacgc gtatgctgct
     3481 ggggtatgcg atggaaagcg cccagggcga gtggcagtcg gttctgcctt atgacgaatc
     3541 cagcggtctg attgctgagc tggtcgggca tctggcttcg ctgctgatgc agcttaatat
     3601 ctggcggcgc ggtctggcgc aggagcgacc tctggaagag tggttgcccg tttgtcgcga
     3661 catgctcaat gatttcttcc tgcccgatgc ggacacggaa gcggcaatga cattgattga
     3721 acagcagtgg caggccatta tcgccgaagg cgtcgcggcg gaatatggcg acgcggtacc
     3781 gatttcgcta ctgcgggatg agctggcgca gcgtctggat caggaacgta ttagccagcg
     3841 cttcctggcg ggccccatca atatttgtac gctgatgccg atgcgttcca ttccgttcag
     3901 agtcgtttgc ctgctgggaa tgaacgacgg cgtatacccg cgccagcttg cgccgttggg
     3961 ctttgacctg atgagccaaa aacccatgcg cggggatcgt agccgtcgcg acgatgaccg
     4021 ctacctgttt ctggaagcgt taatctcggc gcagcagacg ctgtatatca gctacatcgg
     4081 tcgctccatc caggataata gcgaacgctt tccctctgta ctggtgcaag aattggtgga
     4141 ttacatcggg caaagccact atttgccggg cgacgaaacg ctgacctgtg atgagagcga
     4201 agcacgagtc aaagcgcata ttacgcgtct gcatacccgt atgccttttg atgcgcaaaa
     4261 ttaccaaccc ggcgaacagc aaagttatgc cagagagtgg ttgcccgcgg cgagtcagtc
     4321 gggaaaagcg cattctgact ttgtgcagcc gcttcctttt acgatgccgg aaacattgac
     4381 tctggaaagt ctgcagcgtt tttgggccca tccggtacgc gcattttttc agatgcggct
     4441 tcaggttaat ttccgctcgg aagagagtga gattcctgat gctgaaccgt ttgaattaga
     4501 gggattgacg cgatatcaac ttaaccaaca gttgctcaat acgttggttg aagaggacga
     4561 tgccgaacgc ttgttccgcc gttttcgggc tgcgggagag ctgccttacg gcgcgtttgg
     4621 cgaaatattc tgggatgcgc agtgtcagga gatgcagcaa ctggcaagcc gggttatcgc
     4681 ttgccgtaag ccgagccaaa gcctggaagt ggatctgctt tgcaatggag ttcagctaac
     4741 cggctggcta ccgcaggtac aggaggatgg attattgcgc tggcgtcccg ctttaatcag
     4801 cgtggcgcaa ggtgtgcaac tttggctgga acaccttgtc tattgtgcca gcggcggtag
     4861 tggcgaaagt cgcctgtttt tgcgcaaaga gggagaatgg cgatttccgc ctcttgataa
     4921 aacgcaggca atggcttacc tggcgcaact gattgaaggc taccgggaag gcatgtcttc
     4981 tccgctattg gtactgccgg aaagcggcgg cgcatggata aaagcctgtt atgacgctga
     5041 aaatgatgtc atgttagacg acgatgatac tttacagaag gccaggacaa agtttctaca
     5101 ggcttatgaa ggcaacatga tggtgagcgg cgaaggcgaa gatatctggt atcaacgtct
     5161 ttggcgtcag ctggaatcgg aaacgttgca ggctatcatt gcgcagtcac ggcattacct
     5221 gttaccgctg tttcgtttta atcagtctcg ttgattgtat gaaaatcgcg ccattaaaag
     5281 gcttcgacta tgatgcgctc ttcgtcacgg actgattact gataaaaaaa tgctgcctgg
     5341 ttcagcacaa taatatcccg ttccgctcag gtcgatggtt tacgtgacca tacagatgag
     5401 tgggaatgaa agttaatgat gaggtccgtg aatgccccgc agcacctggt tcaaagcgtt
     5461 attgttattg gtcgccctct gggggcctgc agttcaggcg gatatcggtt ggcaaccgct
     5521 gcaagaaact atccgtaaaa gcgataaaga tacccggcag tatcaggcga tacgtcttga
     5581 taatgacatg gtggtgttgc tggtatccga tccgcaggct gtaaagtctc tttctgcgtt
     5641 agtggtgccc gttgtatcgc ttgaagatcc tgaggctcat caggggcttg ctcattatct
     5701 tgagcatatg tgcctgatgg ggtcaaaaaa atatccgcag gcggatagcc ttgccgaata
     5761 ccttaaaaga catggcggta gccacaacgc cagcaccgca ccttatcgaa cagccttcta
     5821 cctggaggtt gaaaacgacg cgcttccagg tgccgtagat cgcttggccg acgccattgc
     5881 cgcgccattg ctcaataaaa agtatgccga acgcgaacga aacgcagtga atgccgagct
     5941 gacgatggcg cgcacccgtg acggtatgcg tatggcgcag gtaagcgccg aaaccattaa
     6001 cccggcgcat ccaggctcgc acttttcagg cggcaatctg gaaacgctaa gcgataagcc
     6061 gggcaatccg gtgcaacagg cgttgatcgc ttttcatgaa aaatactatt catctaatct
     6121 gatgaaggcg gtgatttaca gtaataaacc cttgccggaa ctggcgagta ttgccgccgc
     6181 aacctatggt cgcgtgccga ataaacagat taaaaaaccg gaaattaccg tacctgtcat
     6241 caccgaggcg cagaagggca tcattattca ttacgtgccg gcgctaccgc gtaaagtgct
     6301 gcgcgtggag tttcgtattg ataacaatag cgcgcagttc cgtagcaaga ccgatgaact
     6361 ggtctcttat ctgattggca atcgtagccc ggggacgctc tctgactggc tgcaaaaaca
     6421 aggactggtc gaaggtatta gcgcggattc tgatccgatt gttaatggta acagcggcgt
     6481 atttgccatt tcggcaacgc tgactgataa aggtttggcc aatcgtgatg aagtcgtcgc
     6541 agctatcttt agctatctca atacgttacg tgaaaaaggg atagataaac gttactttga
     6601 cgagctggcg catgtgctgg atctcgactt ccgctatccg tcgattaccc gcgatatgga
     6661 ctatgtcgag tggctggcgg acactatgat ccgcgtcccg gtagcgcata cgctggatgc
     6721 ggcgaatatc gccgatcgtt acgatcctgc cgctatcaaa aatcgcctgg cgatgatgac
     6781 gccgcagaat gcgcgcatct ggtacatcag tccccaggaa ccccataata agattgcgta
     6841 ttttgtggat gcgccttatc aggtcgataa gattagcgaa cagacgttta aaaactggca
     6901 gcaaaaagca cagggcattg cgttgtcgct gccggagtta aacccctata ttcctgatga
     6961 ttttacgctt attaagaatg acaaaaacta cgtgcggcca gaactgattg tcgataaagc
     7021 ggatttgcgc gtggtttatg cgccgagtcg ttatttcgcc agcgagccaa aagctgacgt
     7081 gagtgtggta ttgcgtaacc cgcaggcgat ggacagcgcc cgcaatcagg tactgttcgc
     7141 ccttaatgat tatctggcgg gaatggcgct agatcagctc agcaaccagg cggcagtggg
     7201 cggcattagc ttttccacta acgccaacaa tggtctgatg gtcactgcga acggttatac
     7261 ccagcgtttg ccgcagcttt tcctagcgct gctggaagga tattttagct acgacgccac
     7321 ggaagaacag ctggcgcagg cgaaatcctg gtatacgcag atgatggatt ctgcggagaa
     7381 gggaaaagcc tacgaacagg cgattatgcc ggtgcagatg atttcgcagg tgccttattt
     7441 ttcccgtgat gaacgtcgcg ctttgctgcc gtccattacg ttaaaagagg tgatggccta
     7501 tcgtaatgcg ttaaaaacgg gcgctcgtcc ggaatttctg gttataggaa atatgagcga
     7561 agcccaggcg acctctctgg cgcaagatgt ccaaaaacag ctcgcggcga acggatcggc
     7621 gtggtgtcgt aacaaagacg tggtggttga gaaaaagcag tccgtaatat ttgaaaaagc
     7681 gggcagtagc accgactccg cgttagccgc ggtctttgtc ccggtcggct acgacgagta
     7741 cgtcagcgcc gcctacagcg cgatgttagg tcagattgtt caaccgtggt tttacaatca
     7801 gctacgaacc gaagagcaac tgggatacgc tgttttcgcc tttccgatga gcgttggccg
     7861 tcagtgggga atgggattcc tgctacagag caacgataaa cagccctctt acctgtggca
     7921 acgctatcag gcatttttcc ctgacgccga ggcgaagctg agggcgatga agccggaaga
     7981 gttcgcccaa attcagcagg cgatcattac gcaaatgcgc caggcgccgc aaacgttggg
     8041 cgaagaagca tcccgtttaa gcaaggattt cgatcggggt aatatgcgct ttgactcgcg
     8101 tgataaaatc atcgctcaga taaaattgct gacgccacaa aagcttgccg atttcttcca
     8161 ccaggcggtg gtggaaccac aaggtatggc aatattgtca cagattgccg gtagccagaa
     8221 tggaaaagca gaatacgtgc atccgacagg ctggaaagtg tgggataacg tcagcgcttt
     8281 gcagcaaacg ttacctctaa tgagcgaaaa gaatgaatga tgtcgccgag actcttgatc
     8341 ctctgcgctt gccccttaca ggcgagcgtt tgattgaagc atcagcgggc acaggcaaaa
     8401 cgtttactat cgcggcgctg tatctgcggc tactgctcgg tttaggcggc agcgccgcat
     8461 ttccccgtcc gttgaccgtt gaagaactgc tggtggtaac ctttacggag gccgccactg
     8521 aagagctgcg tgggcgaatc cgcagtaata tccatgagtt gcgcatcgcc tgtctgcggg
     8581 aaagcacgga taatccgctg tatgcccgct tgctggaaga aattagcgac aaaaagcagg
     8641 ccgcgcagtg gttattactg gcagaacgac aaatggacga ggccgcggtt tttaccatcc
     8701 acggtttttg ccagcgtatg ctcagcctga acgctttcga atccggtatg ttgtttgagc
     8761 aacagcttat tgaagacgaa tctttgttgc gttatcaggc ctgcgccgat ttctggcggc
     8821 gtcattgcta tccgctgccg cgcgacatcg cgcaggtggt gtttgacgtg tggaaggggc
     8881 cgaaggcgct cttaaaagat atcgatcgtt atctgcaggg cgaagcgccg gtcattaaag
     8941 cgccgccatc gcaggaggag acgctggcat cgcgccatga acagatcctg gcgcgcatca
     9001 accaggtgaa gcagcagtgg tgtgaggcgg ttagcgagct ggacgcgctg atcgaatcat
     9061 ccggcatcga tcgcagaaaa ttcaaccgcg gcaatcaggc gaaatggatc gaaaagatca
     9121 ccgcgtgggc gcaagaagag accaaaaatt atcaattacc cgaggcgttg ggaaaatttt
     9181 cacagcgttt tttagctgag cgcaccaaag ctgggggcgt gacgccccag cacccattgt
     9241 ttgtcgccat tgataacctg ttgggcgaac cgctatcgat taaagatctg gttcttaccc
     9301 gagcgctctc agagatccgt gaaacggtgg ctcaggaaaa acgacggcgc ggcgagctgg
     9361 ggtttgacga tatgctcagc cgtttagata ccgcgctgcg tagtgaaagc ggcgaggcgc
     9421 tggctgcggc gattcgtacc cgttttccgg tggcgatgat cgatgaattt caggataccg
     9481 acccacaaca gtaccgtatt tttcgccgta tctggcgaca tcaacccgat acggcgctat
     9541 tgctgattgg cgatcctaaa caggcgattt atgcgtttcg tggcgcggat atctttacct
     9601 acatgaaggc tcgcagcgaa gtgagcgcgc actataccct tgacactaac tggcgctccg
     9661 cgccggggat ggtgaatagc gttaacaagc tgttcagtca gatgaatgac gcctttatgt
     9721 tccgcgatat tcccttcagt ccggtaaagt ttgcgcccag aaaccagtcg ctgcaattta
     9781 aagtgaatga cgcgcctcaa ccggcgatga ccctgtggct aatggagggg gaaagctgcg
     9841 gttcgggcga ttatcaaagt tatatggcgc aggtgtgcgc cacgcaaatt cgcgactggc
     9901 tgcgtgccgg gcaaacgggc gacgcgctgc tgacgaacgg cgattcgtcg cggcccgttc
     9961 gcgcctcgga tattagcgtg ctggtgcgca gcaggcggga agccgcgctg atacgggatg
    10021 cgctgacctt actggcgatc ccctccgtct atctttctaa ccgcgacagc gtattcgaaa
    10081 cgctcgaagc gcaggaaatg ctgtgggtgt tgcaggcggt gatggcgccc gaacgtgaga
    10141 atacgctgcg tagcgctctg gcgacatcaa tgatgggcct taccgcgctg gatatcgaaa
    10201 cgcttaacaa tgatgaaaat gcgtgggatg cggttgttga agagtttgat ggctaccgac
    10261 agatttggca taaacgcggc gtgatgccta tgctgcgcgc gctaatgtcg gcgcgcaata
    10321 ttgctgaaaa cctgctggcg acggcgggag gtgaacgtcg gctgacggat attctgcata
    10381 ttagcgaact gttacaggaa gccggttcgc agctggaaag cgaacatgcg ctggtgcgtt
    10441 ggctggcgca acatatcctt gaacctgata gcaatgcttc cagccagcaa ctacgtctgg
    10501 aaagcgataa gcatctggtg caaatcgtca ccattcataa atcgaaaggt ctggaatacc
    10561 cgctggtctg gttacctttt atcacccatt tccgcgtgca ggaccaggct ttttatcacg
    10621 acaggcactc ctacgaggcg gtgctggacc ttagtcacgc cgaagagagc atagcactgg
    10681 cggaagccga acgcctggcg gaagacctgc gcctacttta tgtcgcgctg acccgtgcag
    10741 tgtggcattg cagcctcggc gtcgcgccgc tggtgcggcg tcgtagcgat aagaaaggcg
    10801 agacggatgt gcaccaaagc gcgcttgggc gactcctgca aaaaggcgaa ccgatggatg
    10861 ccgcaggcct tcgcgcctgt attgaggcgc tatgcgacga ggatatcgtg tgtcgaacgc
    10921 caggcaatac ggataacgac cgctggcaaa ttgccgctgc atcgcacgcg gaactcagcg
    10981 ccagaacgct gcaacgcctg ctttatgata gctggcgcgt caccagttat tccggtttgc
    11041 agcagcgggg acatagcgtg gcgcaagatc ttattcctcg tctcgacatt gacgccgcag
    11101 gcgttggcga agcggcggaa gcgccggcaa tgacgccgca tcactttcct cgcggggcat
    11161 cgccgggaac atttttgcac agcctgtttg aagagcttga ttttactcaa ccgatagacc
    11221 cccaatgggt acaggaaaaa ctggagctga gtggttttga aacgcgatgg gagcccgtac
    11281 ttacccgctg gctggacacc gtgttgcacg ttccccttaa cgagacgggc gttagtctga
    11341 gcgtgctgac cgagcgtgaa aaacaggttg aaatggagtt ttatctgccg attgcccagc
    11401 cgcttaccgc cggagagtta gatgcgttga ttcgtcgata cgacccgctt tcagcaggtt
    11461 gccctgcgct ggatttcatg caggttcgcg gcatgttaaa gggctttatc gacctggtgt
    11521 tccgttatga ggggcgctat tacctgctcg actataaatc taactggctg ggcgaggata
    11581 gcgccgctta tacccagacg gcgatggctg cggcgatgca ggcgcatcgc tatgatttgc
    11641 agtaccagct ttatacgctg gcattgcatc gttaccttcg tcatcgaatg gcgaattacg
    11701 actatgaacg ccatttcggc ggcgtcatct atctcttttt acgcggggtg gatagcgaac
    11761 gtccgcagca gggtattttt accactcgtc ctgcggcggc gttaattaac caactggatg
    11821 atatgtttgc aggtgaaatg agtgaggagg cgcaatgaca atccagaagc ggttgctgga
    11881 ggccgttgaa caaaaactct tacggcccat tgatgcccag tttgctttaa ccgtcgccgg
    11941 taacgacgat cccgccgtga cgctggcggc agcgctgctt agtcatgacg caggtgaagg
    12001 tcacgtgtgt ctgccgttgt cgcgtttaac gttaacggag gaggcgcatc ccttactggt
    12061 cgcctggata agcgaaacgg ctacgccaat cgactggaaa aagcggttac tggcgtctgc
    12121 ggcggttagc tgcggcgata gccccgcgcc gttaattctg tgcggcgatc gcctctacct
    12181 gaatcgcatg tggtgcaacg agcgtacggt tgcgcgcttt tttaacgagg ttaaccaggc
    12241 catcgccgta gatgaagatc agttatcccg tattctggac gcgctattcc ctccgacaga
    12301 cgaggtgaac tggcaaaagg tggccgccgc cgtagcgcta actcgccgta tctccgtgat
    12361 ttcaggcggt cccggcaccg gtaaaaccac caccgtcgcg aagctgctgg cggcattaat
    12421 tcaaatggcg gatggcgaac gttgccgtat ccggctggcg gcgccaaccg ggaaagcggc
    12481 cgcacgcctg acggagtcgc tcggcgcggc gttgcgtcag cttcctctta ccgatgcgca
    12541 gaaaaagcgt ataccggagg acgccagtac gctgcaccga ctgctgggcg cacagcccgg
    12601 cagccagcga ttacgccatc atgcgggcaa cccgctgcat ctggacgtgc tggtggtcga
    12661 tgaggcatca atgattgatt tgccgatgat gtcacgtttg attgacgctc tgccgccgca
    12721 cgggcgggtc atttttcttg gcgatcgcga tcagttggca tccgttgagg cgggcgctgt
    12781 gttgggcgat atttgcgcct atgtcaacgc agggtttacg gcggaacgcg cccgacagct
    12841 aagtcgactc actggtagcg ccattccggc gggggccgga acgcaagccg cgtctttacg
    12901 cgatagcctc tgtttgttgc aaaagagcta ccgtttcggc agcgattctg gcatcggcaa
    12961 gctggcggcg gcaattaact gtggcgacag gtcggcaatc caggctgttt ttcagcaggg
    13021 gtttagcgat atagagaagc gtacattgca aagcagcgac gattatgccg ggatgctgga
    13081 tgaagcgctg gcgggctatg ggcgctacct gcggttgctg catgaaaaag cggcgccgga
    13141 ggcaatcctt caggctttca atgagtatca actgctttgt gcgctgcgcg aaggcccatt
    13201 tggcgtgagg ggactgaatg accgcattga gcaggcgatg gtgcagcaac gaaaaattca
    13261 gcggcatccg cactctcgct ggtatgaagg gcgtccggta atgattgcgc gcaacgatag
    13321 cgcgttgggg ctatttaacg gcgatattgg tattgcgctc gatcgcgggc aggggttacg
    13381 cgtctggttt gtgatgccgg acggcacgat caagtccgtt cagcccagcc gtctgccgga
    13441 acatgataca acctgggcga tgacggtaca taaatcacag gggtctgaat ttgatcacgc
    13501 cgcgctgatt ttacccagcc aacgttcgcc ggtcgtgacg cgggagctgg tgtataccgc
    13561 tgttacgcgg gcgcggcggc ggttatcgct gtatgccgat gaacggatcc tggcaggcgc
    13621 gattgtgacg cgaacggaac ggcgcagcgg gttagccacc ttatttgatg aagtcagtcg
    13681 tatcggataa gacgagttct cgccggatgg cgacgcgtag cgtcttatcc ggcctccaaa
    13741 tgatgctttc gagcgtaggc ctgataagcg cagcgccatc aggcccccct tgttatccta
    13801 aatctgccat cagcaccttt gaacgtcgct gatagttata catttttttc ttgctctcag
    13861 gcagtaactc aatatcgaca ggcgtaaaac cgcgctcctg gaaccagtga atactgcgcg
    13921 tcgtcaacac aaacaattta cgcagcccca tttgccgtgc ctgggcggca acccgctcca
    13981 gaagcacttc tccacgcgat gagctgcgat aatccggatg taccgctacg caggccattt
    14041 cgcctatttt ctcttccaca aaaggataca gcgccgcgca agcgatagtc atattatcgc
    14101 gctgaataat ggtaaattta tcgatctcca tctccagttg ttcacgggaa cggcgtacca
    14161 gaatgccctg ctgttccagt gggcggataa gctccagaat accgccaata tcgttgatgg
    14221 tagcgcggcg gatctgctcg gcgctctcca tgacgatctg cgtaccgata ccatcacgcg
    14281 agaacaattc ctgtaatagc gagccatctt cctgatagct gatcagatgg caacgacgaa
    14341 cgccgctacg acaggctttt accgcgccgc gcaaaaaacg tacggttccg gagttgtaat
    14401 cgccctgcgc ttccaactct tccacccgcg cctgcgcttc attcgggaag agttcagaaa
    14461 tgatgccgcc ctcgctattg gtaacgccct gagaagaaca gaaaccgatc attttttccg
    14521 ctttcagttt aacggcgagt tgagtggcaa tctcttctga ggtcagatta aaactttcgc
    14581 cggtcactga gacggcgacc ggccccatca gaacgatcgc gccgttatcc aactggcggt
    14641 tgatcgcatc ttcatcaatg cgccggatac ggccgctatg acagtagtcc acgccatcat
    14701 caacgcccag cggctgcgca atggtgaaat tgccgctgac gacattaatg tgcgcgccct
    14761 gcaacggcgt attgttcaga ctcatcgaca gacgggcggt aatatcaagc tggagtaaac
    14821 cggcggcctg tttcaccagc tccagtgttt tggcgtccgt cacccgtgtg tttttgtggt
    14881 aaatcggttc atgatgatgc gcggccagat tggcgtcgat ttgcggtcgc gcgccataca
    14941 ccacgacaag gcgaataccg aggctatgca gtagcccgat atcgctaacg atgctggaaa
    15001 aattgtcatg ctcaatggct tcgccgccga gcataatgac aaaggttttt ccgcgatggg
    15061 tattgatata gggaactgaa tggcgaaacc cttctaccag ttcggtttta cgttccttta
//
LOCUS       DAJVSD010000094        14987 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.094, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000094 DAJVSD010000000
VERSION     DAJVSD010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 14987)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14987)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14987
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.094"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(32..790)
                     /gene="chbG"
                     /locus_tag="OQP62_002346"
     CDS             complement(32..790)
                     /gene="chbG"
                     /locus_tag="OQP62_002346"
                     /EC_number="3.5.1.105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitin disaccharide deacetylase"
                     /protein_id="HCS1721884.1"
                     /translation="MERVLIVNADDFGLSKGQNYGIVEAYRNGVVTSTTALVNGEAID
                     HAAQLSRELPALGVGMHFVLTLGKPVSEMPGLTRDGLLGKWIWQMAEEDTLPLDEIAH
                     ELACQYQRFIDVFGREPTHLDSHHHVHMFPQIFPIVARFAAQRGIALRIDRQTVLNAD
                     DLPSDLRSTQGFSSEFYGEEITEACFLRILDASAHRGEASLEVMCHPAFVDNIIRQSA
                     YCYPRLTELEVLTSASLKAGIAERVYRPGSFLDI"
     gene            complement(803..2158)
                     /locus_tag="OQP62_002347"
     CDS             complement(803..2158)
                     /locus_tag="OQP62_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HCS1721885.1"
                     /translation="MSQKLKVVTIGGGSSYTPELLEGFIKRYHELPVTELWLVDVEDG
                     KKKLGIIYDLCQRMIDKAGVPLKLYKTLDRREALKGANFVTTQLRVGQLKARELDERI
                     PLSHGYLGQETNGAGGLFKGLRTIPVIFDIIKDVEELCPNAWVINFTNPAGMVTEAVY
                     RHTNFKKFIGVCNIPVDMKMFIHDVLALNENDDLSIDLFGLNHMVFIKDVLVNGTSRF
                     AELLDGVASGQLKASTVKNIFDLPFSEGLIRSLNMLPCSYLLYYFKQKEMLAIEMGEY
                     YKGGARAQVVQKVEKQLFDLYKNPELNVKPKELEQRGGAYYSDAACEVINAIYNDKQT
                     EHYVNIPHHGHVENIPADWAVEMTCILGRNGATPHPRITRFDEKVLGLIHTIKGFEVA
                     ASNAALSGNFNDVLLALNLSPLVHSDRDAEVLARELILAHEKWLPNFAACIEALKGKH
                     H"
     gene            complement(2283..3125)
                     /gene="chbR"
                     /locus_tag="OQP62_002348"
     CDS             complement(2283..3125)
                     /gene="chbR"
                     /locus_tag="OQP62_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ChbR"
                     /protein_id="HCS1721886.1"
                     /translation="MMQLQVNATEIKTVYEQQLFNGKNFHVFIYNKTESVTGLHQHDY
                     YEFTLVLTGRYYQEINGKRVLLERGDFVFIPVGSNHQSFYEFGATRILNVGISKRFFE
                     QHYLPLLPFCFVASQVYRANSTFLTYIETVIASLNFRGNGLDEFIEVVTFYIINRLRH
                     YREEQVYDDIPQWLKATVEIMHDKTQFGEHALENMVRLSAKSQEYLTRATRRYYSKTP
                     MQIINEIRINFAKKQLEMTNYSVTDIAYEAGYSSPSLFIKTFKKMTSFTPNSYRKRLT
                     EINE"
     gene            complement(3136..3483)
                     /gene="chbA"
                     /locus_tag="OQP62_002349"
     CDS             complement(3136..3483)
                     /gene="chbA"
                     /locus_tag="OQP62_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N,N'-diacetylchitobiose transporter subunit
                     IIA"
                     /protein_id="HCS1721887.1"
                     /translation="MFDLENVVDNQTAAEELEEVVMGLIINSGQARSLAYGALRKAKE
                     GDFEAAKAMMDQSRIALNEAHLVQTKLIEGDQGEGKMKVSLVLVHAQDHLMASMLARE
                     LIAELIELHEKLK"
     gene            complement(3534..4892)
                     /gene="chbC"
                     /locus_tag="OQP62_002350"
     CDS             complement(3534..4892)
                     /gene="chbC"
                     /locus_tag="OQP62_002350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N,N'-diacetylchitobiose transporter subunit
                     IIC"
                     /protein_id="HCS1721888.1"
                     /translation="MSNVIASLEKVLLPFAVKIGKQPHVNAIKNGFIRLMPLTLAGAM
                     FVLINNVFLSFGEGAFFYSMGIRLDASTIETLNGLKGIGGNVYNGTLGIMSLMAPFFI
                     GMALAEERKVDALAAGLLSVAAFMTVTPYSVGEAYAVGANWLGGANIISGIIIGLVVA
                     EMFTFIVRRNWVIKLPDSVPASVSRSFSALIPGFIILSIMGIIAWALSNYGSNFHQII
                     MDTISTPLASLGSVVGWAYVIFVPLLWFFGIHGSLALTALDSGIMTPWALENISIYQQ
                     YGSVDAALEAGKTFHIWAKPMLDSYIFLGGSGATLGLIIAIFLASRRADYRQVAKLAL
                     PSGIFQINEPILFGLPIIMNPVMFIPFILVQPILAAITLVAYYLGIIPPITNIAPWTM
                     PTGLGAFFNTNGSVAALLVALFNLAVATLIYLPFVVVANKAQNAIEQEESEEDIANAL
                     KF"
     gene            complement(4975..5295)
                     /gene="chbB"
                     /locus_tag="OQP62_002351"
     CDS             complement(4975..5295)
                     /gene="chbB"
                     /locus_tag="OQP62_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N,N'-diacetylchitobiose transporter subunit
                     IIB"
                     /protein_id="HCS1721889.1"
                     /translation="MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA
                     GEKGPAADVVLLGPQIAYMLPEIQRLLPGKPVEVIDSMLYGKVDGLGVLKAAVAAIKK
                     AAAN"
     gene            complement(5596..5937)
                     /gene="osmE"
                     /locus_tag="OQP62_002352"
     CDS             complement(5596..5937)
                     /gene="osmE"
                     /locus_tag="OQP62_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotically-inducible lipoprotein OsmE"
                     /protein_id="HCS1721890.1"
                     /translation="MNKNVAGILSAAAVMTMLAGCTAYDRTKDQFVEPVVKDVKKGMS
                     RAQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCA
                     EYDTDPQAPKQ"
     gene            6155..6982
                     /gene="nadE"
                     /locus_tag="OQP62_002353"
     CDS             6155..6982
                     /gene="nadE"
                     /locus_tag="OQP62_002353"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HCS1721891.1"
                     /translation="MTLQQEIIQALGAKPHINPEEEIRRSVDFLKAYLKTYPFLKSLV
                     LGISGGQDSTLAGKLSQMAITELREETGDNALQFIAVRLPYGVQADEQDCQDAIAFIQ
                     PDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTHGVVVGT
                     DHAAEAITGFFTKYGDGGTDINPLHRLNKRQGKQLLAALGCPEHLYKKVPTADLEDDR
                     PSLPDEAALGVTYDNIDDYLEGKTLDSAIAKTIEGWYVKTEHKRRLPITVFDDFWKK"
     gene            7103..7984
                     /gene="cho"
                     /locus_tag="OQP62_002354"
     CDS             7103..7984
                     /gene="cho"
                     /locus_tag="OQP62_002354"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011233065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease Cho"
                     /protein_id="HCS1721892.1"
                     /translation="MVRRQSAPRLEFEAAAIYEYPEHLRPFLSEAPALPGVYIFHSES
                     DTLPLYIGKSVNIRSRVLSHLRTPDEAAMLRQARRISWICTAGEMGALLLEARLIKEQ
                     QPLFNKRLRRNRQLCSLQLSEQKIEVVSARSVDFSHEPNLFGLFANRRAALQSLQNLA
                     DEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQAHFLRLQASLERLRVVCW
                     PWKGAIALKESRPQMTQFHIINNWLWLGAVPSLDEAATLVRTPAGFDQDGYKILCKPL
                     MSGQYEIIELHTDCRQS"
     gene            complement(8059..8544)
                     /gene="spy"
                     /locus_tag="OQP62_002355"
     CDS             complement(8059..8544)
                     /gene="spy"
                     /locus_tag="OQP62_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-independent periplasmic protein-refolding
                     chaperone"
                     /protein_id="HCS1721893.1"
                     /translation="MRKLTALFVASTLAMGAANLAHAAETTTAAPADAKPMMQHKGKF
                     GPHHDMMFKNLNLTDAQKQQIRDIIKAQREQMERPLLEERRAMHDIIASDTFDKAKAE
                     AQITKMEAQRKANMLAHMETQNKIYNVLTPEQKKQYNANFEKRLTERPAQEGKMPAAA
                     E"
     gene            complement(8880..9848)
                     /gene="astE"
                     /locus_tag="OQP62_002356"
     CDS             complement(8880..9848)
                     /gene="astE"
                     /locus_tag="OQP62_002356"
                     /EC_number="3.5.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate desuccinylase"
                     /protein_id="HCS1721894.1"
                     /translation="MDNFLALTLSGTTPRVTQGKGAGFRWRWLGHGLLELTPDAPVDR
                     ALILSAGIHGNETAPVEMLDKLLSALYSGSLTLTWRVLVVLGNPQALAAGIRYCHSDM
                     NRMFGGRWQSFAESDETRRARELELSLETFFSSGQARVRWHLDLHTAIRGSHHLRFGV
                     LPQRDRPWEADFLAWLGAAGLEALVFHQAPGGTFTHFSSEHFGALSCTLELGKALPFG
                     QNDLTQFSVTSQALSALLSGVETSTSFSPPLRYRVVSQITRHSDKFALYMDAQTLNFT
                     AFAKGTLLAEEGDKRVTVTHDVEYVLFPNSSVACGLRAGLMLERLP"
     gene            complement(9841..11184)
                     /gene="astB"
                     /locus_tag="OQP62_002357"
     CDS             complement(9841..11184)
                     /gene="astB"
                     /locus_tag="OQP62_002357"
                     /EC_number="3.5.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-succinylarginine dihydrolase"
                     /protein_id="HCS1721895.1"
                     /translation="MTAHEVNFDGLVGLTHHYAGLSFGNEASTRHRFQVSNPRLAVKQ
                     GLLKMKALADAGFPQAVIPPHERPFIPALRQLGFTGSDEQILDKVARQAPRWLSSVSS
                     ASPMWVANAATVCPSADALDGKVHLTVANLNNKFHRALEAPVTEALLRAIFRDESQFS
                     VHSALPQVALLGDEGAANHNRLGGEYGSAGVQLFVYGREEENEIRPARYPARQSREAS
                     EAVARLNQVNPQQVIFAQQNPEVIDQGVFHNDVIAVSNRQVLFCHEAAFARQKVLINQ
                     LRTRVDGFMAIEVPAGEVSVSDAVATYLFNSQLLSRDDGSMLLVLPRECQDHAGVWRY
                     LNKLVAEDNPISAMQVFDLRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDALFT
                     ALNAWADRYYRDRLTAADLADPLLLREGREALDVLTRLLDLGSVYPFQQTGAADG"
     gene            complement(11181..12659)
                     /gene="astD"
                     /locus_tag="OQP62_002358"
                     /pseudo
     CDS             complement(11181..12659)
                     /gene="astD"
                     /locus_tag="OQP62_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460271.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate-semialdehyde dehydrogenase"
     gene            complement(12656..13690)
                     /gene="astA"
                     /locus_tag="OQP62_002359"
     CDS             complement(12656..13690)
                     /gene="astA"
                     /locus_tag="OQP62_002359"
                     /EC_number="2.3.1.109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine N-succinyltransferase"
                     /protein_id="HCS1721896.1"
                     /translation="MRVIRPVEHADIAALMQLAGKTGGGLTSLLANEATLAARIERAL
                     KTWSGELPKGEQGYVFVLEDSETGEVGGICAIEVAVGLNDPWYNYRVGTLVHASKELN
                     VYNALPTLFLSNDHTGSSELCTLFLDPEWRKEGNGYLLSKSRFMFMAAFRDKFNEKVV
                     AEMRGVIDEHGYSPFWQSLGKRFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLS
                     EEAQAVIGEVHPQTAPARVVLEKEGFRYRHYIDIFDGGPTLECDIDRVRAIRKSRLVE
                     VAEGQPALGDYPACLVANENYHHFRAALVRADPQTSRLVLTAAQLDALKCRAGDHVRL
                     VRLCAEEKTV"
     gene            complement(13681..14907)
                     /locus_tag="OQP62_002360"
     CDS             complement(13681..14907)
                     /locus_tag="OQP62_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HCS1721897.1"
                     /translation="MSLSVTRENFDEWMVPVYVPAPFIPVRGEGSRLWDQQGKEYIDF
                     AGGIAVNALGHAHPALREALNEQANRFWHTGNGYTNEPALRLAKKLIDATFAERVFFC
                     NSGAEANEAALKLARKYAHDRVGNHKSGIVAFKNAFHGRTLFTVSAGGQPTYSQDFAP
                     LPPDIRHAAYNDLNSASALIDDNTCAVIVEPVQGEGGVIPATNAFLQGLRELCDRHQA
                     LLIFDEVQTGVGRTGELYAYMHYGVTPDILTTAKALGGGFPIGAMLTTQDYASVMTPG
                     THGTTYGGNPLATAVAGKVLDIINTPEMQNGVRQRHDAFIERLNTINVRFGMFSEIRG
                     LGLLLGCVLQTEFAGKAKLIAQEAAKAGVMVLIAGGDVVRFAPALNVSDEEIATGLDR
                     FALACERLQAGGASCG"
BASE COUNT         3664 a         4232 c         3610 g         3481 t
ORIGIN      
        1 gcggcgcatt cttgcgccgc aaactcagga gctaaatatc aagaaaactg ccaggacgat
       61 atacacgttc cgcaatccct gccttgagtg acgcagacgt caacacctcc agttcagtta
      121 agcgggggta acaataggcg ctctggcgaa taatgttgtc cacaaacgcc ggatgacaca
      181 tcacctccag agaggcttct cctcgatgcg ccgaggcatc cagaatgcgt aaaaagcacg
      241 cttcggtgat ctcctcgccg taaaattcac tactaaatcc ttgagtgctg cgcaaatccg
      301 acggcagatc gtctgcattc aacaccgtct ggcggtcaat acgtaacgca atcccgcgct
      361 gcgccgcaaa gcgggcgacg atggggaaaa tttgcgggaa catatgcaca tgatgatgac
      421 tgtcgagatg cgttggctcg cggccaaata cgtcgatgaa acgctgatac tgacacgcca
      481 gttcatgcgc aatttcatcc agcggaagcg tatcctcctc cgccatttgc cagatccatt
      541 tccccaacag gccgtctcgc gtcaggcccg gcatctctga caccggtttg cctaacgtca
      601 aaacaaaatg cattcccacc ccaagcgcag gcagctcgcg gctaagctgc gccgcatggt
      661 caatagcctc gccattgacc agcgccgtcg tggaggtcac aacgccgttg cgatatgctt
      721 caacaatgcc gtaattttgc cctttactca ggccaaaatc atcggcattc acaatcaaca
      781 cgcgttccat agcctacctc tgtcagtggt gcttaccttt aagcgcttcg atgcaagcgg
      841 caaaattagg cagccatttt tcatgcgcca gaatgagctc acgcgccagg acttctgcgt
      901 ctcggtcgga atgcaccagc ggactcaggt taagcgccag cagcacatca ttaaagtttc
      961 cgctcagcgc cgcattgctg gccgcgacct caaatccttt aatagtgtgg ataagcccca
     1021 gcactttttc gtcaaaacgg gtgatacgcg ggtgcggcgt cgcgccattg cgtcccagaa
     1081 tgcaggtcat ttccaccgcc cagtccgccg ggatattctc gacatgccca tgatgtggaa
     1141 tattaacata atgctcagtc tgcttgtcat tataaatagc gttaatgact tcacaagcgg
     1201 catcggaata ataagcgccg ccgcgttgct caagctcttt cggcttcacg tttagctcag
     1261 gatttttgta caagtcgaag agttgtttct ccactttttg tacgacctga gcgcgcgcgc
     1321 cgcctttgta atattcgccc atttcaatcg ccagcatctc tttttgcttg aagtaataca
     1381 acaaataaga gcacggcagc atgttcagcg agcgaatcaa tccttcacta aacggcagat
     1441 caaagatatt ttttacggtt gacgctttca actgaccgga cgccacgcca tccagtaatt
     1501 ctgcgaaccg tgaggtgcca ttcaccagca catctttaat aaagaccata tggtttagac
     1561 caaacaggtc aatggaaaga tcgtcattct cattcagcgc cagcacgtca tgaataaaca
     1621 ttttcatgtc gacaggaata ttacatacgc cgatgaattt tttaaagttg gtatgacgat
     1681 aaaccgcttc cgtcaccatc cccgccgggt tagtaaagtt aatgacccac gcattcggac
     1741 ataattcttc aacatcctta atgatgtcaa aaataaccgg aatggtacgc aaccctttaa
     1801 ataaaccgcc agcgccgttg gtttcttgcc ccagatagcc gtggctaagc gggatacgct
     1861 cgtccagctc acgggctttg agttgaccaa cgcgtagctg ggtagtgaca aaattagcgc
     1921 ctttcagcgc ttcccggcga tccagcgttt tatacaattt tagcggaacg cctgctttat
     1981 caatcattcg ctggcagaga tcataaataa tgcccagctt ctttttcccg tcttcaacgt
     2041 caaccagcca taattcggtg acaggtaatt catggtagcg cttaataaag ccttcaagta
     2101 attcaggggt gtagctgctc ccgccaccaa tagtgacgac ttttaatttc tggctcataa
     2161 tatctccctt cagtgtatga cactgatatg tattacgcta tgcccgctcg taagaaatag
     2221 cgtgacgttc cccgcgctat tggggcaagc gtgaaatgta actaatcgag caatgtaaac
     2281 cgttactcat taatttccgt caatcgcttc cgataactat tcggcgtgaa tgaggtcatc
     2341 ttcttaaacg ttttaataaa cagacttgga ctactgtacc cggcttcata agcaatatcc
     2401 gtaaccgaat agttggtcat ttccaactgt ttcttggcaa aattaatgcg aatctcatta
     2461 atgatttgca tcggcgtttt gctgtaataa cgtcgggtgg cgcgcgtcag atactcctgg
     2521 gattttgccg acaggcgcac catattttcc agcgcatgtt cgccaaactg cgttttatca
     2581 tgcattatct ccacggttgc tttcagccat tgtggaatat catcataaac ctgctcttcg
     2641 cggtaatgac gtaagcggtt tataatataa aatgtcacca cttcgataaa ttcgtcgagc
     2701 ccattgccgc gaaaattcaa cgacgcaatc accgtttcaa tataggtaag gaaggtgcta
     2761 ttcgccctgt atacctgcga tgccacaaaa caaaacggca gtaacggaag ataatgctgt
     2821 tcaaaaaaac gtttactaat tcctacgttc agaatacgcg ttgcgccaaa ctcatagaaa
     2881 ctttggtgat tcgaccccac cgggataaaa acaaaatctc cacgttccag cagcacacgc
     2941 ttcccgttaa tctcctggta ataacgtccg gttaatacca gggtaaattc ataatagtcg
     3001 tgctgatgca gcccggtgac gctttccgtc ttgttataga taaacacatg gaaatttttg
     3061 ccattgaaga gctgctgctc ataaaccgtt ttgatttccg ttgcgttaac ctgtagctgc
     3121 atcatccgcc ccctgttatt tcagtttctc atggagctca atcaactcag cgatcagttc
     3181 acgagccagc attgaggcca tcaaatgatc ctgagcgtga accaggacca gactgacttt
     3241 cattttgcct tcgccctgat cgccttcgat gagttttgtc tgcacaagat gcgcttcatt
     3301 gagcgctatg cgcgactggt ccatcatcgc tttcgccgcc tcaaagtcgc cttctttcgc
     3361 ttttctgagc gcgccatatg ccaggctgcg cgcctgacca gaattgatga taagccccat
     3421 aacgacttct tcgagttcct cagccgctgt ctggttatct acaacatttt caagatcaaa
     3481 catagtcttt cctctgattc agcccggcat ggcatcccat gccgacgcgg agtttagaat
     3541 ttcagtgcgt tagcgatatc ttcttcgctt tcttcctgct cgatggcgtt ctgcgctttg
     3601 ttagccacca ccacgaaggg gagataaatc agggtagcga ccgccaggtt aaatagcgca
     3661 accagcaacg cggcgacact gccgttggtg ttaaagaacg cccccagccc ggttggcatg
     3721 gtccacggcg caatattggt aatcggcgga ataataccca aatagtaagc caccagcgta
     3781 atcgccgcca gaatcggctg aaccagaatg aaggggataa acatcaccgg gttcataata
     3841 atcggcaggc caaacaggat gggttcgtta atctggaaga tacctgacgg cagcgccagt
     3901 tttgccacct ggcgatagtc cgcgcgacgg gatgccagga agatagcgat gatcagaccc
     3961 agcgttgcgc cgctaccacc gaggaagata taagaatcca gcatcggttt cgcccagata
     4021 tggaacgttt taccggcttc cagcgccgca tcgacggagc catactgctg gtaaatagag
     4081 atgttttcca gcgcccaggg cgtcatgatg ccgctgtcca gcgcggtcag cgccagcgaa
     4141 ccatgaatac caaagaacca cagcagcggt acaaaaatga catatgccca ccctaccacg
     4201 ctacccagcg atgccagcgg cgtagagata gtgtccataa taatctgatg gaagttagaa
     4261 ccgtaattag acagcgccca ggcaataatc cccataatag agagaataat aaagccggga
     4321 attaatgctg agaatgaacg agacaccgaa gccggtacgc tgtccggtag tttaatcacc
     4381 cagttgcgcc ggacaataaa tgtaaacatc tccgcgacca ccaggccaat aataataccg
     4441 gagataatat tcgcgccgcc cagccagtta gcgcctacgg cataggcctc gccgacacta
     4501 tacggcgtta cggtcataaa tgccgccacg gagagcagtc cggcggccag cgcatcaacc
     4561 ttgcgctctt ccgccagcgc catgccgata aaaaatggcg ccatgagcga cataatgccc
     4621 aatgtgccgt tatagacgtt cccgccgatg cctttcaatc cattaagtgt ttcaatggtt
     4681 gaggcatcaa gccgaatgcc catggaataa aaaaacgccc cctccccaaa gctcaggaaa
     4741 acgttattaa ttaatacaaa catcgccccc gcaagggtta atggcattaa acgaataaag
     4801 ccgttcttga ttgcattaac gtgtggctgc tttcctattt ttacagcaaa aggaaggagt
     4861 accttttcaa gtgaagcaat aacgttactc atagaaaaat acccttaaat accgcaataa
     4921 aatattgcgg ttagtgtatg aaataactct ttgacgggaa aaattaaaaa ataattaatt
     4981 cgcggcggct tttttaattg ccgctaccgc agctttaagc acgcctaagc catctacctt
     5041 gccgtacaac attgaatcaa tgacttctac cggtttaccg ggtaataaac gctgaatttc
     5101 ggggagcata taagcaattt gcgggcctaa taacacgacg tccgctgccg ggcctttttc
     5161 accggccagg gtttcaggga atgcttcaat aatcaccggc acttcatatt tttcagcctg
     5221 agcgcgcatt tttgatacca gtaacgatgt tgacatgccc gcagaacaaa acagataaat
     5281 gtgtttcttt tccataaaaa ccttcctcat gtgcgattat ctgtcaacca gatacgccgc
     5341 aagcctcaac ctgcatccat actctgggcg acttgcgtaa ccggatttac ttttttaggt
     5401 ggctgaaatg agtatacggg atcggaccgc cggatggtat ttccttgacc cactaaattg
     5461 tctctcattg acctggcgtt atgacccccc tcacatttcg ggcaaataat tcgcgataat
     5521 aaataaggtt atggcaggca caaaaaaacc ggctcgcagg ccggtttcct tgaatgttca
     5581 ggcaatgtac agttgttact gcttcggcgc ctgtgggtca gtgtcgtact ccgcacaggt
     5641 ctggtagccg gagttaatca cgtgcccggt atcatccagc gcaacaaagt aggtttccgc
     5701 tttaccatca cgttgaccca ggatgtaggt ctgacaggta ccacgcgcat gaatcatgct
     5761 cacttcagat gacggtttgc ccgcaatctg cgcaacttgc gccctgctca ttcctttttt
     5821 aacatcttta acgacaggct caacaaattg gtcttttgta cgatcatacg ccgtacagcc
     5881 tgccagcata gtcattaccg ccgctgcgct taaaattcct gctacgttct tgttcatttt
     5941 ccgtcctctt gtttatcagc gtgttatgta agcctggaat acatcagaac atttttcaag
     6001 ccgcgcctcg cgacaaaaag tctttcggaa aattctctaa cgcagcgata tgttgtttta
     6061 aacaccgctt agcccgccaa accttgtcgt ttcagcggcg aagggttagc tttaacaggg
     6121 taaagattca ttttttaatg tcgaaggggg ttaaatgact ctgcagcaag agataatcca
     6181 ggcgcttggc gcgaaaccgc atatcaaccc tgaagaagaa attcgccgca gcgtggattt
     6241 tcttaaagcg tacctgaaaa cctatccctt tttgaaatcg ctggtgttag gcatcagcgg
     6301 cgggcaggat tcgacgctgg ccgggaaact cagccagatg gctatcaccg aattgcggga
     6361 agagaccggt gataatgcgc tgcagtttat cgccgttcgt ctgccttatg gcgtgcaggc
     6421 cgatgaacag gattgccagg acgccattgc ttttattcag ccggacagag tactcaccgt
     6481 caatattaaa ggcgccgtcc tcgccagcga acaggcgctg cgcgaagcgg gaattgagct
     6541 gagcgatttt gttcgcggca atgaaaaagc gcgtgagcga atgaaagcgc aatatagcat
     6601 cgccggtatg actcacggcg tcgtggtggg caccgaccat gcggcggaag cgataaccgg
     6661 gttcttcacc aaatatggcg atggcggtac cgatattaac ccgcttcatc gccttaacaa
     6721 acgccagggc aaacagcttc tcgcagcgct gggctgtcct gagcatctgt ataaaaaagt
     6781 ccccaccgcc gatttggaag acgaccgccc ttcactgcct gatgaagccg cgctgggcgt
     6841 aacgtatgac aatattgacg attacctgga aggcaaaacg ctggactccg ccatcgctaa
     6901 aactatcgaa ggctggtacg taaaaactga acataagcgc cgtttaccga ttacggtatt
     6961 cgacgacttt tggaaaaagt aagcgtactt ctactgttgt gccggatatc gctcgtctat
     7021 ccggcctcct ctcttcccag cctctttttt aatcacccat ccgctgttat actggatgaa
     7081 taaccagtta acggagatca ctgtggtacg gcgtcaatca gccccccgcc ttgagtttga
     7141 agcagcggcc atttacgaat atccagaaca tttacgtcct ttcctcagcg aagcgccagc
     7201 cttaccgggc gtctatatat ttcatagcga aagcgatacg ctgccgcttt atatcggtaa
     7261 aagcgtaaat attcgcagcc gggtgctctc acatctgcga acgcctgacg aggccgctat
     7321 gctgcgacag gcgcggcgga taagctggat ctgcaccgct ggggaaatgg gcgcgttgct
     7381 gctggaggcg cgactgatca aagaacaaca gccgctgttt aacaagcggt tacgtcgtaa
     7441 tcgccagctt tgctctctac agttgagcga acaaaagatt gaggtcgttt ccgcccgcag
     7501 cgtcgatttt tcccatgagc cgaacctgtt tggactcttc gccaaccgtc gggcagcgct
     7561 gcaaagctta cagaacctcg ccgatgaaca aaaattgtgt tatggcctgc tggggcttga
     7621 accggtaagc cgtgggcgcg cctgttttcg tttcgcgctg aagcgctgcg ctggcgcgtg
     7681 ttgtgggcaa gaaaccccgc aggcgcattt tcttcgtctg caggcctcac tggaacggtt
     7741 acgtgtggtt tgctggccct ggaaaggcgc tatcgcgtta aaagagagcc gcccacaaat
     7801 gacccagttc cacattatca acaactggtt atggctgggg gcggtaccct cgctggatga
     7861 ggccgccacc ctggtgcgca cccctgcggg ctttgatcag gatggctata aaattctctg
     7921 taagccacta atgtcaggtc aatatgagat cattgaactg cacaccgact gtcgccagtc
     7981 ataaagaaaa ccgccgatcc tgtccacctc aacgattgtg ttgtcgacaa gaccggcggt
     8041 cttaaattat gcggaaagtt attctgccgc agcaggcatt ttaccttctt gcgccgggcg
     8101 ttctgtcaga cgcttctcaa aattagcgtt atattgcttt ttctgctccg gcgtcagaac
     8161 gttataaatt ttattctggg tttccatatg cgccagcata ttggccttgc gctgtgcttc
     8221 cattttcgta atttgcgctt cggctttggc tttatcgaag gtatcgctgg caataatatc
     8281 atgcatggcg cgacgctctt ccagcagcgg acgttccatt tgctcgcgct gcgcttttat
     8341 aatgtcgcga atttgttgct tctgcgcgtc tgtcaggttc aggtttttaa acatcatatc
     8401 gtgatgtggg ccaaatttac ctttatgctg catcattggc ttcgcatccg ctggcgcggc
     8461 ggtggtagtc tcagcggcat gagccagatt cgcagcaccc atcgccaggg tagaggcaac
     8521 aaatagagca gtcagtttac gcatatttcc atccttcctt tcagttattt ttacggcata
     8581 tttaaaacag cgccgtgttg tcgtgattaa ctttaaccgt cttagcgtca attagtcaga
     8641 acaacggtaa aacaatgaaa gtataaaaaa cactttttcg ccaattgtga agaaaaaaag
     8701 aataaattgc gcagagttga aagagaaata tacaacagca tgatatagca gaaattatgc
     8761 agaactataa cgcagcaacg cttattaata aagcaattct ctaggaataa tccgtaatag
     8821 catgaaactg tgtcccaaat catccctgta atcctaacgt gagcttacag ggacatttat
     8881 cagggcagtc tttccagcat taatccagcc cgcaatccgc aggcgacaga ggaattagga
     8941 aagagaacat attcaacgtc atgcgtcacc gtcacgcgct tatccccctc ctcggccagc
     9001 aacgttccct tcgcaaaggc agtaaaattc agcgtttgcg catccatata aagcgcgaac
     9061 ttgtcgctgt gacgcgtgat ttgcgacacc acccgatagc gtagcggcgg cgaaaacgag
     9121 gttgacgttt cgacaccgct cagcaacgcc gacaacgcct gcgaggttac gctgaactgc
     9181 gtcagatcgt tttgcccaaa cggcaacgcc tttcccaact ccagcgtaca ggaaagcgcg
     9241 ccgaaatgtt cagagctaaa gtgcgtaaac gtaccgccgg gcgcctgatg aaataccaac
     9301 gcctccagtc ctgccgcgcc cagccacgcc agaaaatccg cctcccacgg gcggtcgcgc
     9361 tgcggcaata cgccaaaacg caaatgatgc gagccacgaa tggcggtatg cagatccaga
     9421 tgccagcgta cccgcgcctg gccagatgaa aagaaggtct ccagacttag ctccagctca
     9481 cgcgcccgcc gcgtttcatc gctttcggca aaggactgcc aacgcccgcc aaacatacgg
     9541 ttcatatcac tgtgacaata gcgtattccc gccgccagcg cctgcggatt gccgagtacc
     9601 accagcactc gccacgttaa cgtcaagctg cctgaataca gcgccgacag cagcttatcc
     9661 agcatctcga ccggcgcggt ttcattaccg tgtatccccg cagaaagaat taacgcgcgg
     9721 tcgaccggcg catcgggcgt gagttcaagc agaccatggc ctaaccagcg ccagcgaaaa
     9781 cccgcgccct tcccctgcgt cacccgtggt gtcgtgccgc ttagcgtcaa cgccagaaag
     9841 ttatccatca gccgcccccg tttgctggaa aggataaacc gaccccaaat ccagcagacg
     9901 cgttaacaca tccagcgcct cccggccttc tcgcaataat aacggatcgg ccagatcggc
     9961 agcggtcagg cgatcgcgat aataacgatc cgcccacgcg ttaagggccg taaacagagc
    10021 gtcattcatc attaccgctg gattcaccgc ccgtcgttct tcttctgtta acaccacgcg
    10081 taatcgcaga caggccgggc cgccgccgtt ggccatactt tctcgcaaat caaacacctg
    10141 catcgcgctg atggggttat cctccgccac cagcttattc agatagcgcc agacgccggc
    10201 atggtcctga cattcccgcg gcaacactaa cagcattgag ccgtcgtcac ggcttaacaa
    10261 ctgactatta aacaggtagg tggccacagc atctgataca gaaacctctc cggcgggcac
    10321 ctctatcgcc ataaaaccgt caacgcgcgt acgcaactga ttaatgagca ctttctgccg
    10381 ggcaaacgcc gcttcgtgac aaaacaatac ctgtcgattc gaaacggcga tgacatcatt
    10441 atggaatacg ccttgatcga tgacctccgg gttttgctga gcgaagataa cctgttgcgg
    10501 attcacctga ttaagacgcg ccacggcctc gctggcttcg cggctctggc gcgccggata
    10561 acgagcgggt cgtatttcat tctcctcttc gcgcccatag acaaaaagct gcacgcctgc
    10621 cgaaccatac tcgccgccaa gacggttatg attcgccgcg ccttcatctc ccaataatgc
    10681 gacctgcggt aacgcgctat gcactgaaaa ctgactttca tcgcgaaata tggcgcgtag
    10741 cagcgcttcg gtaacaggcg cctcaagagc gcgatgaaat ttattgttta aattcgccac
    10801 cgtcaggtga actttcccgt ccagcgcgtc tgccgatggg caaaccgtcg ccgcattcgc
    10861 aacccacatt ggcgacgcgg aactcacgct ggaaagccag cgtggcgcct gacgcgcaac
    10921 cttatccaga atctgctcat cgctacccgt gaagccgagc tgacgtaacg ccggaataaa
    10981 gggccgctca tgcggcggga tcaccgcctg gggaaagccg gcatccgcca gagctttcat
    11041 ctttagcagc ccctgcttta ccgccagacg aggattcgac acctgaaaac ggtggcgggt
    11101 cgatgcctca ttgccgaagg atagcccggc ataatggtgc gtaagcccca ccagcccgtc
    11161 aaaattaact tcatgcgccg tcataccgcc tccctgcgag aaaagtcgag gccagggctt
    11221 aatgtcgcag gcaacgtcag ttcgggagat tccagactgg ccatcggcca ggcgcaataa
    11281 tcggcggcat accaggcgct gggccgatgg ttgccagacg cgccgacacc accaaacggc
    11341 gcagtactcg ctgccccggt gagcggttta tttcagttaa cgatccctgc ccgcgcctcc
    11401 agcaagagtt gttcgaactg cgcgcgatcc gtcgacacca gcccacacga cagaccaaaa
    11461 cgggtattat tcgccagacg aatcgcctca tcgaaatgcg cataacgcca gacgttcagc
    11521 agcggaccaa acacctcttc atccggcaca tccgcgacgc ccgtcagctc aatgatgcca
    11581 ggcgtcagca gagaggttcc ctctttgacc ttccgcggcg ccagtagcgt gcgaccgcct
    11641 aatgcctctc gttgacgcca ggcctccatc acatgctgtg ccgcctgcgc tgaaatcagt
    11701 ccgccgataa acggctgcgg gtcgtcgtcc catctgccgg gctgcagacg tccggcgacg
    11761 tcaactagcc gcgccagaaa tgcatctccc tgcgcgccct gttttaccag aaggcgtcgc
    11821 gcgcaagtac agcgctgtcc ggcggtaata aacgccgatt gcagcgtcag atgtaccgcc
    11881 gcatccatat ttgtcgcatc ctcaataatg agcgggttgt ttccgcccat ttcaagagcc
    11941 aggatttttt ccggctggcc ggatagctga cgatgaagct gatatccggt actggcgctg
    12001 ccggtaaaca gcagtccgtc gagatcgtcg agcgaactca gcgcttgtcc ggtctcccgg
    12061 ccgccctgca ccagattaag aacgcctgcc ggtaaccccg cccgttccca gagttttatt
    12121 accgtttccc cggtccatgg cgttagctcg ctaggtttga agatcagcgt attgcctgcc
    12181 agcaacgcgg gcacaatatg gccattcggt aaatggccgg gaaagttata agggccgaat
    12241 accgccagca caccgtgagg acgatggcgc agcgtcgcgg caccatcgac aagttcgctt
    12301 ttttgttcgc cggttctggc atggtaagcc ttaatcgaga tggcaatctt attgatcatc
    12361 gccgtcactt ccgtcgccgc ctcccagcgc ggtttaccgg tttcacgcgc gatgacctcc
    12421 gtgagatcgg ctttatgcgc ctccagcagg acggaaaatt tctctacgat agcctgccgt
    12481 gccgcaaaag gctgtctggc ccagcgagga aacgccgcgc gcgccgcctg acaggcctcg
    12541 gcgacctgtg ccgcatcagc gtcattcccc tgccaaagta tctcctcgct caccggattc
    12601 gttttgcggc ggcgttcgcc ctgaccggtt atccagtcgc cgtttatcca tagcgtcata
    12661 cggttttctc ctcagcgcaa aggcgtacca gccgaacgtg gtcgcccgcg cgacatttca
    12721 gcgcatccaa ctgcgcggcg gtaagtacaa gtcgtgaagt ctgcggatcg gcacgcacca
    12781 gcgcggcccg aaagtggtga tagttttcat tggcgaccag acatgcagga tagtcgccaa
    12841 gcgcgggttg cccttccgcg acttccacca gtcggctttt acgaatagcc cgcacgcggt
    12901 caatatcaca ctccagcgtc ggcccaccgt cgaagatgtc gatatagtgg cgatagcgaa
    12961 agccttcctt ttccagcacc acgcgggctg gcgccgtttg cgggtggact tcgccaatca
    13021 cggcctgtgc ctcttcagat aagaagtggg tataaatagg atgtttgggc atcagctcgg
    13081 cgataaacgc tttttgcccg gtaccgcata aaaaatccgc ccggctgaaa tccatagaaa
    13141 aaaagcgttt gccgagactt tgccagaagg gagaataacc atgctcgtca atgacaccgc
    13201 gcatttccgc caccactttc tcattgaatt tatcgcgaaa cgcggccata aacataaagc
    13261 gcgattttga caacaagtag ccgttaccct ctttacgcca ttcgggatcg agaaacagcg
    13321 tgcaaagctc actgctgccg gtatgatcat tactcaggaa taatgttggc aacgcgttat
    13381 atacattcag ctctttggaa gcatgaacca gcgtaccgac acgatagtta taccaagggt
    13441 cgttaaggcc gaccgcgacc tcaatggcgc agatcccgcc gacctcaccc gtttcactgt
    13501 cctcgagaac aaatacatat ccttgttcgc cttttggcag ctcgccggac caggttttta
    13561 gcgcgcgttc aatgcgggcc gccagcgtcg cttcatttgc cagtagcgag gttaagccgc
    13621 cgcccgtttt gcctgcaagc tgcatcagcg cggcgatatc cgcatgttcg acaggacgaa
    13681 tcacccgcat gatgcgcctc ccgcctgaag gcgttcgcac gccagggcaa aacgatcaag
    13741 cccggtagct atctcctcgt cgctcacatt taacgctggc gcaaaacgca ccacgtcgcc
    13801 accggcgatg agcaccatca cgcctgcttt tgccgcttcc tgggcgatga gtttggcttt
    13861 tccggcaaac tccgtctgta gcacacagcc aagcagtagc cccagcccgc gaatttcact
    13921 gaacatgcca aaacgtacat taatggtatt tagacgttca ataaacgcat cgtggcgctg
    13981 tctgacgccg ttttgcatct ccggcgtatt gatgatatcc agtacttttc cggcaactgc
    14041 cgtcgccagc ggattaccgc cgtaggtggt gccatgcgta cctggcgtca tgacgctggc
    14101 atagtcttgc gtagtcagca tcgcgccgat cgggaagccg ccgcccaacg ctttagcggt
    14161 cgtcaggata tcgggcgtaa cgccataatg catatatgca tacagttcgc cggtacgtcc
    14221 gacgcccgtc tgcacctcat caaaaatcag taacgcctga tgccggtcgc acaattcacg
    14281 cagcccctgc aaaaaagcgt tcgtggcggg gatcacgccg ccctcgccct gcacaggctc
    14341 tacgattacg gcgcaggtat tgtcatcaat gagcgcgctg gcggagttca gatcgttata
    14401 ggctgcatga cgaatatccg gcggcagcgg cgcaaagtcc tgtgaatagg tgggttgacc
    14461 gccagcgctg acggtaaaga gcgtgcggcc atggaacgcg tttttaaagg ccacaatgcc
    14521 gcttttatgg ttgccaacac gatcgtgggc atatttgcgc gccagtttta atgcagcttc
    14581 atttgcttca gcgcctgaat tacaaaagaa aacgcgttcg gcgaaggtcg cgtcgatcag
    14641 ttttttcgcc agtcgcagcg ccggttcatt ggtgtaaccg ttcccggtat gccagaagcg
    14701 attcgcctgt tcatttaacg cctcgcgcag cgccggatgc gcatgtccca atgcgttgac
    14761 cgcaatcccg ccagcaaaat caatgtactc tttcccctgc tgatcccaca ggcgtgagcc
    14821 ttctccgcgt acaggaataa aaggcgcggg aacatatacc ggcaccatcc attcatcaaa
    14881 gttttcgcgc gtaactgaca gagacatagc gacctctttt ggtaaaaata aagttatcta
    14941 tatgttaatt aatatgggtg tttgcgctgt aaatgtagat tgcagca
//
LOCUS       DAJVSD010000095        14792 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.095, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000095 DAJVSD010000000
VERSION     DAJVSD010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 14792)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14792)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14792
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.095"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            63..1259
                     /locus_tag="OQP62_002361"
     CDS             63..1259
                     /locus_tag="OQP62_002361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HCS1721898.1"
                     /translation="MSIVFNTVAKPSGSLCNLSCKYCFYLDKPRGQRVMSDDVLETYI
                     RRVIDDTPSSEVSFCWQGGEPTLCGLSFYQKVVCLQQRYANGKTIYNSLQTNGVLINE
                     EWAAFFVQHQFLIGISIDGPQVVHDNYRRTPSGRASFSRVVNAIRLLQANDVEFNTLT
                     VVNDASCRHGNAIYHFLTQELESKHLQFIPIVEPLAQKAQRSLTLSDNEDSPSLMPFS
                     VTPEGWGAFMCDVFDQWIRHDVGRIFVQLFDNLLGVWMGEPATLCTMQSTCGQSLLVE
                     QNGDVFSCDHFVFPAYKLGNLQQHSLEEMAASPFQQQFGAAKANLSSRCQNCTWRFAC
                     HGGCPKHRICMDGGERQNYLCKGYLEFFQHVTPYMNVMRQLLLNQRPAAHITRIVDMI
                     ADDVRQ"
     gene            1357..2214
                     /locus_tag="OQP62_002362"
     CDS             1357..2214
                     /locus_tag="OQP62_002362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HCS1721899.1"
                     /translation="MKSVKNVTFCGQVTLPAIGQGTWYMGERADQRQREVSALRAGLD
                     LGLRLIDTAEMYADGGAEKVVGEALAGRRDEAFLVSKVYPWNAGGQKIVAACEESLRR
                     LKTDYLDLYLLHWAGGFSFEETVEGMERLIAQGKIRRWGVSNLDYDDMQALWRIPGGQ
                     QCATNQVLYHLASRGIEYDLLPWCQQQRMPVMAYSPLAQAGRLRSGLLNHPVVNEIAQ
                     AHNATAAQILLTWVIAHPGVMAIPKAGSTEHVKQNAAALEITLSANELALLDNAWPAP
                     KGKTALDMV"
     gene            complement(2313..3197)
                     /locus_tag="OQP62_002363"
                     /pseudo
     CDS             complement(2313..3197)
                     /locus_tag="OQP62_002363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460255.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
     gene            complement(3526..4521)
                     /gene="gapA"
                     /locus_tag="OQP62_002364"
     CDS             complement(3526..4521)
                     /gene="gapA"
                     /locus_tag="OQP62_002364"
                     /EC_number="1.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006322611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HCS1721900.1"
                     /translation="MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDAEYMAYM
                     LKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLT
                     DETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKYEGQDIVSNASCTTNCLAPLAK
                     VINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKV
                     LPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTE
                     DDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK"
     gene            4863..5276
                     /gene="msrB"
                     /locus_tag="OQP62_002365"
     CDS             4863..5276
                     /gene="msrB"
                     /locus_tag="OQP62_002365"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HCS1721901.1"
                     /translation="MANQPSAEELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVY
                     HCLVCDTPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHL
                     GHVFPDGPQPTGERYCVNSASLAFSDEKNGDQLKG"
     gene            5318..5596
                     /locus_tag="OQP62_002366"
     CDS             5318..5596
                     /locus_tag="OQP62_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaC family protein"
                     /protein_id="HCS1721902.1"
                     /translation="MNLDEIINSMTPEVYQRLSTAVELGKWPDGVALTPEQKENSLQL
                     VMLWQARHNTEAQHMTIDTHGQMVMKSKQQLKADFGITSKPIATLKMQ"
     gene            complement(5947..6603)
                     /gene="pncA"
                     /locus_tag="OQP62_002367"
     CDS             complement(5947..6603)
                     /gene="pncA"
                     /locus_tag="OQP62_002367"
                     /EC_number="3.5.1.-"
                     /EC_number="3.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nicotinamidase/pyrazinamidase"
                     /protein_id="HCS1721903.1"
                     /translation="MTNRALLLVDLQNDFCAGGALAVAEGDSTIDIANALIDWCQPRQ
                     IPVLASQDWHPAQHGSFASQHQAEPYRQGKLDGLPQTLWPDHCVQHTDGAALHPLLNQ
                     HAIDACIYKGENPLIDSYSAFFDNEHRQKTTLDTWLREHDVTELIVMGLATDYCVKFT
                     VLDALELGYAVNVITDGCRGVNIHPQDSAHAFMEMAAAGATLYTLADWEETQGQAIAR
                     "
     gene            complement(6630..7646)
                     /gene="ansA"
                     /locus_tag="OQP62_002368"
     CDS             complement(6630..7646)
                     /gene="ansA"
                     /locus_tag="OQP62_002368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HCS1721904.1"
                     /translation="MQKKSIYVAYTGGTIGMQRSDKGYIPVSGRLQRQLALMPEFHRP
                     EMPDFTIHEYAPLMDSSDMTPEDWQHIAADIKAHYDEYDGFVILHGTDTMAYTASALS
                     FMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPVNEVTLFFNNRLFRGNR
                     TTKAHADGFDAFASPNLPPLLEAGIHIRRLNTPPAPYGSGELIVHPITPQPIGVVTIY
                     PGISAEVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELKEASSRGIVVVNLTQCMSG
                     RVNMGGYATGNALAHAGVIGGADMTVEATLTKLHYLLSQGLDTQAIRSAMAQNLRGEL
                     TPDD"
     gene            complement(7742..9598)
                     /gene="sppA"
                     /locus_tag="OQP62_002369"
     CDS             complement(7742..9598)
                     /gene="sppA"
                     /locus_tag="OQP62_002369"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HCS1721905.1"
                     /translation="MRTLWRFIAGFFKWTWRVLNFVREMVLNLFFIFLVLVGVGIWMQ
                     IGNGSNSEQTARGALLLDISGVIVDKPSTNHRLGALGRQLFGASSDRLQENSLFDIVN
                     AIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKALREFRDSGKPVFAVGENYSQGQY
                     YLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKVSTHVFRVGTYKSAVEPFIRD
                     DMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGAQAIIDGLTSVGGDTAKYA
                     LDHKLVDALASSADVEKALTKQFGWSKTENNYRAISYYDYSLKTPADTGGTIAVIFAN
                     GAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAA
                     RAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGV
                     HSDGVSTSPLADISMTKALSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQ
                     GHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKLKQWHLDYYQDEPTVLDMVMDSMTG
                     SVRAMLPEAIQAMLPAPLVSAANTVKAEGDKLAAFNDPQNRYAFCLTCANVR"
     gene            9772..10323
                     /locus_tag="OQP62_002370"
     CDS             9772..10323
                     /locus_tag="OQP62_002370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H nitroreductase"
                     /protein_id="HCS1721906.1"
                     /translation="MDALELLVNRRSASRLAEPAPVGEQLQNILRAGMRVPDHKSLQP
                     WRFFVIEGEGRDRFSAVLEQGAVAAGGDEKAIEKARNAPFRAPLIITVVAKCEENHKV
                     PVWEQEMSAGCAVMAMQMAAIAQGFNGIWRSGALTESAIVREAFECRPQDKIVGFLYL
                     GTPQLKASTTISTPDPTPFVRYF"
     gene            10441..11484
                     /gene="selD"
                     /locus_tag="OQP62_002371"
     CDS             10441..11484
                     /gene="selD"
                     /locus_tag="OQP62_002371"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HCS1721907.1"
                     /translation="MSKQAIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPNLLV
                     GNETRDDAAVYDLGNGTSIISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMA
                     IAILGWPINTLSPDIAREVTEGGRFACRQAGIALAGGHSIDAPEPIFGLAVTGVVPTE
                     RVKKNSTAQAGCKLFLTKPLGIGVLTTAEKKSLLKPEHQGLATEVMCRMNVAGAAFAN
                     IDGVKAMTDVTGFGLLGHLSEMCQGAGVQAMLCYQDIPKLPGVEEYIALGAVPGGTER
                     NFASYGHLMGDMSREVRSLLCDPQTSGGLLLAVTPDAEDDVKATAAEFGIELTAIGEL
                     VEARGGRAMVEIR"
     gene            11489..13438
                     /gene="topB"
                     /locus_tag="OQP62_002372"
     CDS             11489..13438
                     /gene="topB"
                     /locus_tag="OQP62_002372"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HCS1721908.1"
                     /translation="MRLFIAEKPSLGRAIADVLPKPHRKGDGFIECGNGQVVTWCIGH
                     LLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHQAGEIIHAG
                     DPDREGQLLVDEVLDYLQLPAEKRQQVRRCLINDLNPQAVERAIDRLRANSDFVPLCV
                     SALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVA
                     KDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRINGQPALV
                     TSYNDKRESESAPLPFSLSTLQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCR
                     YLPEEHFAGRQAVMNAISVHAPDLLPQPVVNPDTRNRCWDDKKVDAHHAIIPTARSSS
                     VHLTENEAKVYTLIARQYLMQFCPDAVFRKCVIELEIAKGKFVAKARFLAEAGWRTLL
                     GSKERDEENDGTPLSVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQ
                     DKDLKKILRATDGLGTEATRAGIIELLFKRSFLTKKGRYIHSTDAGKALIHSLPEMAA
                     RPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVKRFRGIVAPGGGE
                     KKKSAPRKRAGKKSPPAEETGRQTE"
     gene            complement(13468..>14792)
                     /gene="gdhA"
                     /locus_tag="OQP62_002373"
     CDS             complement(13468..>14792)
                     /gene="gdhA"
                     /locus_tag="OQP62_002373"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HCS1721909.1"
                     /translation="ESFLNHVQKRDPHQTEFAQAVREVMTTLWPFLEQNPRYRHMSLL
                     ERLVEPERVIQFRVVWLDDKNQVQVNRAWRVQFNSAIGPYKGGMRFHPSVNLSILKFL
                     GFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGPDTDVPAG
                     DIGVGGREVGFMAGMMRKLSNNSACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKR
                     HGLGFEGMRVAVSGSGNVAQYAIEKAMAFGARVVTASDSSGTVVDESGFTPEKLARLC
                     EIKASRDGRVADYAREFGLTYLEGQQPWSVPVDIALPCATQNELDVDAARVLIANGVK
                     AVAEGANMPTTIEATDLFLEAGVLFAPGKAANAGGVATSGLEMAQNAARLSWKAEKVD
                     ARLHHIMLDIHHACVKYGGDNKHTNYVQGANIAGFVKVADAMLAQGVI"
BASE COUNT         3394 a         3859 c         4105 g         3434 t
ORIGIN      
        1 gctgatatcg ccctgtcacg tcccgcttat gctataccca ttcttcacag cgagtaagac
       61 gaatgagcat agtattcaat accgtggcca agcccagcgg cagtctgtgt aacttatcct
      121 gcaagtactg tttctatctt gataaacccc ggggccagcg cgtcatgtct gacgatgtgc
      181 tggagacgta tatccgccgg gtaattgatg atacgccatc atcagaggtc tcgttttgtt
      241 ggcagggggg agagccgacg ctatgcggtc tttcttttta tcaaaaagtg gtgtgcttgc
      301 agcaacgcta tgccaacggc aaaactattt acaacagtct gcaaaccaat ggcgtattaa
      361 tcaatgaaga gtgggcggct ttctttgtgc agcaccagtt cctgattggt atatcgattg
      421 atgggccgca agtcgttcat gataattacc ggagaacgcc gtcagggcgg gcgtcttttt
      481 cccgagtcgt taatgctatc cgccttctgc aggcaaatga tgtcgagttc aatacgctca
      541 ctgtcgtgaa tgatgcatca tgccgtcatg gcaacgctat ttatcatttt ttgacgcagg
      601 aactggaaag taaacaccta caatttattc ccattgttga gccgctcgcg caaaaagcgc
      661 agcgttcttt gacgttatct gacaatgaag attcgccttc gctgatgccc ttttccgtca
      721 cgcctgaagg gtggggggcc tttatgtgcg atgtttttga tcaatggata cgtcacgatg
      781 tcggacgcat attcgtacag ctttttgata acttacttgg cgtctggatg ggggagcccg
      841 ccacgctttg tacgatgcag tcgacctgcg ggcaaagttt gctggtggag cagaatggcg
      901 acgtgtttag ctgtgaccat tttgtttttc ccgcctataa actgggcaat ctgcagcaac
      961 actctttaga agaaatggcg gcctctcctt ttcagcagca gtttggcgcg gctaaagcaa
     1021 acctttcttc acgctgccag aactgtacgt ggcgctttgc ctgtcacggc ggttgtccga
     1081 aacatcgaat ttgtatggac ggcggcgaac ggcaaaatta tctctgtaaa ggatatctgg
     1141 agttctttca acatgtgacg ccctatatga atgtgatgcg tcaattatta ctgaatcagc
     1201 gacccgccgc gcatattacc cgcatcgtcg acatgattgc ggatgacgtt cgtcagtgac
     1261 aagaaaatcg ccccccttgc gcggtatgat gccggacatt accgtagggt ctaagagtcc
     1321 tgtattgttt taccgtcgag tgaaattgaa aaggaaatga aatcagtgaa aaacgtaacg
     1381 ttttgcgggc aggtgacgct tcctgccatc ggacagggaa catggtatat gggcgagcgc
     1441 gcggatcaac gtcagcgcga ggtttcggcg ctgcgcgcgg ggctggattt ggggttacgc
     1501 cttattgata cggcggaaat gtatgccgac ggcggggcgg aaaaggtcgt gggcgaggcg
     1561 ttagcagggc gacgcgatga ggcatttcta gtgtcaaaag tgtacccgtg gaacgctggc
     1621 ggccagaaga tagttgccgc ctgtgaggaa agcctgcgtc gtctgaaaac agattatctc
     1681 gatctctatc tattgcactg ggccggaggc ttttcattcg aagagaccgt tgaaggtatg
     1741 gagcggctaa tcgcgcaggg aaaaattcgc cgttggggag tctctaatct tgattatgac
     1801 gatatgcagg cgctgtggcg catccctggg ggacagcaat gcgcgacaaa tcaggtgctc
     1861 tatcatctgg cgtcacgcgg tattgagtat gatttattgc cgtggtgtca acaacagcga
     1921 atgccagtga tggcctatag cccgctggcg caggctggcc ggttacgtag cggtttactg
     1981 aatcatccgg tggtgaatga aattgcgcaa gcgcataacg caacggcggc gcaaatctta
     2041 ctgacgtggg tgattgcgca tccgggcgtg atggcgatcc cgaaagccgg aagtacagaa
     2101 cacgtgaagc aaaatgcggc ggcgcttgag attaccttgt cagcaaacga acttgcctta
     2161 ctggacaacg cctggcctgc gccaaaaggg aaaaccgcgt tggatatggt gtgacgccgg
     2221 ataaaatgtg taagtgccgc catccggcag gtcatgcctg atggcggctg gcgccttcca
     2281 gagcctatag caacgccgtt atccattcac ttttagcgtt tagcgacgca gatagtctgc
     2341 gccagacgag agggtttttc ttctgtggct tgttgcggcg cagtagcgta aaccgtttca
     2401 acgcagacaa acgttttata gccgtcatcc ggcatgtcgc ccatgctgac ggacaacgcc
     2461 gggccagggt tccagcctac gacgttaagg tgatggtggt ggaccacatc aatcgtgcgg
     2521 tttaatgtcg catcgtggat cacgctacat gcttcaggat tgaggtaaac gcgatcggta
     2581 cggtccggaa aggtttgtat accgtcggct aggacatctt ctttagcgtc gttaacttta
     2641 tcaataaacc gatcgccgag tccgctgacc ttaacgttgg cgatgtcgcc aacgttaaaa
     2701 tagctgtgga gcgcggatgt ggttgcaaat tcgccatgcg cttccagttc aatttcacag
     2761 gttttaccca ctttaaaacg tgccagcagc gtgaaatcgt gcggccagta tttccgggtg
     2821 gcctcactgc tttgcagctc aaatgtcagc attacgccat tatcatcttc attatgcgct
     2881 tttagcgccc acggaagatt acgcgcaaag ccgtgtgacg gcagaccctg ttgagccgca
     2941 ggtccaaacc agggccagca gatcggtacg ccgccgcgta gcgccacgcc ggttttgaaa
     3001 ggcgtattat tactgagcca caatacctct tcctcgccaa tgggtttcta ggagagaagg
     3061 tgcgcgccct gtaatgcaaa agaggcttta acctgcggat ggtcaacgac gatcagatcc
     3121 aggtcatcaa gctgacgacg ggaaaggaca ggggtaagct gttcgataac cgggagggca
     3181 aaaattttat taatcattac gcaatcctct taaccctaaa taattcgagt tgcatgacaa
     3241 ggcgcttgtg ccttgaccag tgcttgcgct ggcccgtaga ggcgaggccg caggccgagt
     3301 aacgcggcaa gtgaacgaca aattcatcgg gaacgaattt gaacaaccgt aggtaacctt
     3361 cggtcagggg catccctgat tcatcccgat aagttcgact tccgtcagtg attcgggtga
     3421 gaaagcatag ccaacacacc tgcaacttga agtatgacgg gtatatcttt aagcaaaaaa
     3481 aagagcgacc tgagtcgctc ttaccaatga ctgtgtcatc tcaacttatt tggagatgtg
     3541 agcaatcagg tccagtactt tgttggagta accggtttcg ttatcgtacc aggagaccag
     3601 tttcacgaag ttgtcgttca gcgcgatgcc tgctttagca tcgaacacgg aagtgcatac
     3661 ttcgccgttg aaatcggtag atacaacgtc gtcttcggtg taacccagaa cgcctttcat
     3721 ttcgccttcg gcagcagctt taacagcagc tttgatctgc tcgtaggtag ccgctttttc
     3781 cagacgaacg gtcaggtcaa caacggatac gttcggagtc ggaacgcgga acgccatacc
     3841 agtcagtttg ccattcagtt ccggcagtac tttacctacc gctttagcag cgccagtaga
     3901 ggacgggatg atgttctgag atgcgccgcg gccgccgcgc cagtctttgt gagacgggcc
     3961 gtcaacggtt ttctgggttg cggtagtcgc gtgaacagta gtcatcagac cttcgatgat
     4021 gccgaagttg tcgttgataa ctttagccag cggcgccagg cagtttgtgg tgcaggaagc
     4081 gttggaaacg atgtcctggc cttcgtattt gtcaaagtta gcgcctttaa caaacattgg
     4141 ggtgttgtct ttagacggac ccgtcagaac cacttttttc gcgccagcgg tgatgtgttt
     4201 acgcgcggtt tcgtcagtca ggaagatacc ggtagcttca gccactacgt caacaccaac
     4261 ttcgtcccat ttcaggttag ccggatcgcg ttcagcggta acacggattt ttttaccgtt
     4321 aacgatcaga tgaccgtctt tcacttcaac agtaccgtcg aaacggccgt gagtggagtc
     4381 atatttcagc atgtatgcca tgtactctgc gtctaacagg tcgttgattg caacgatctc
     4441 gatgtcagaa cgtttctgag cagcacggaa aacaatgcga ccgatacggc caaaaccgtt
     4501 gatacctact ttgatagtca tatattccac cagctatttg ttagtgaata aaaggttgcc
     4561 tgtaaaatta caaaaacctt acgcagcgtc aagcggaatc gtgtcaatca ttgcgacaaa
     4621 tcaatcctct gcacaacctt tgcgcggctg attcgcctca ctcttccttt cagcttgaaa
     4681 ccacatgggg gcgccgcccc gaattttaaa gggcaaccga gataataatg tgacatcagt
     4741 cacgattcgt gagccgccat ttcgcaatga tcaagtttag aacaaaagtt ggtactgagg
     4801 tgctaatgtt ttgttagaat cggtcaggca atgtgagcac gtttaaagtg agatgtgagc
     4861 aaatggctaa ccaaccttca gcagaagaac tcaagaaaaa attgtccgaa atgcaattct
     4921 atgtgacgca ggatcgtggc acagaaccgc catttaccgg acgcctgcta cataataaac
     4981 gcgatggggt ttatcactgc ctggtctgtg atacgccgct ttttcactcc cacaccaaat
     5041 acgattcagg ctgcggctgg cctagctttt accagcctgt cagcgaagag gcgattcgtt
     5101 acatagacga tttttctcat ggcatgcagc gtgtcgaaat tcgttgcggt aactgcgatg
     5161 cgcatctcgg acacgttttc ccggacgggc cgcagccaac cggtgagcgc tattgcgtta
     5221 actcggcctc gctggccttt tctgacgaga aaaacggcga tcaactgaaa ggctgaaaaa
     5281 acgattcagc aaattattcc acaggagcgg acacatcatg aatcttgatg agatcattaa
     5341 cagcatgacg ccggaagtgt atcaacgttt atccaccgcc gttgagctgg gtaaatggcc
     5401 ggatggcgtg gcgttgacgc cggaacagaa agaaaacagc ctgcaactgg tgatgctatg
     5461 gcaggcgcgg cacaataccg aagcgcaaca tatgacgatc gatactcacg gtcagatggt
     5521 gatgaaaagc aagcagcagc tcaaagcgga tttcggtatt acgtcaaagc cgattgcgac
     5581 attgaaaatg cagtaacggc agccggataa gaggtagtcg ccatccggtg gtttaattgc
     5641 caatgcgttg tgcttaccgg gcctgctcat tgctgtcagg cacaggcccg ccatattttt
     5701 acccattacg cttaatgtcc agcgagtccg ccaactgttt cgctaactga ttattgtcat
     5761 tggcggccta ttcccagaac attgcgccgg ccagcccgcg ctttttaatc tgtttcgtta
     5821 gaagcgctct ccagcctgcg ttgagctttg cctggtagcg acgctgacgt gacgtatccg
     5881 gcccaaagat ctatgcaatg gtctcaccgt tgcgtgatgt attgaccgga tacgatacct
     5941 gctccgctac ctggcgatag cctggccctg cgtctcttcc cagtctgcca gcgtatacag
     6001 cgtcgcgcct gccgccgcca tctccataaa cgcgtgtgcg ctatcctgcg ggtgaatatt
     6061 cacgccgcga cagccatcgg tgataacgtt aacggcatag cccaactcta gcgcatccag
     6121 caccgtaaat tttacgcagt aatcggtcgc caaccccatc acgataagct cggtaacgtc
     6181 atgctcgcga agccaggtat caagggtagt tttctgccga tgttcgttgt caaaaaacgc
     6241 gctgtagcta tcaatcagcg ggttttcacc tttatagatg caggcgtcaa tcgcatgttg
     6301 gttaagcagg ggatgtaacg ccgcgccgtc ggtatgttga acgcagtgat ccggccagag
     6361 cgtttgcggc agcccgtcca gctttccctg tctatagggt tccgcctgat gctggctggc
     6421 gaagctgcca tgctgcgcgg gatgccagtc ctggctggcc agcaccggaa tctgccgggg
     6481 ctggcaccag tcaataagag cgttggcgat gtcgatggtg ctgtcgcctt ccgctacagc
     6541 cagcgcgccg ccggcacaaa agtcattttg caagtcgacc agtaataagg cccggtttgt
     6601 cattatcttc tccttgtcgt cgggattttt taatcatccg gcgtcaattc accacgcaag
     6661 ttttgcgcca tcgcgctacg aatcgcctga gtgtccagac cctggcttaa caaataatgc
     6721 agtttggtta aggtagcttc gacggtcata tcggcaccgc caatcacgcc agcgtgcgcc
     6781 agcgcattac cggtagcgta cccgcccata ttgactcgcc ctgacatgca ttgcgtcagg
     6841 ttaaccacca cgatgccgcg cgaactggcc tctttcagct cctgtaaaaa cgctttattt
     6901 tgcggcgcgt tgcctacgcc ataagagcgc agaatcagcg cttttaccgg ctgacgcaga
     6961 aagttacgta ctacctcggc ggaaatcccc ggataaatcg tcactacgcc tatcggctgc
     7021 ggcgtaatag ggtgaacgat taattcacca gaaccgtagg gcgcgggagg cgtatttaaa
     7081 cggcgaatgt gaattcctgc ttccagcaag ggcggcagat taggagaggc aaaagcgtca
     7141 aaaccatccg catgtgcttt ggtcgtgcga ttgccgcgga acagacgatt attaaaaaac
     7201 agcgttactt cattaacagg gtagttggcg gcgacataaa gcgcattcag caaattaatt
     7261 tgcccgtcgg agcgcagctc agccagcgga atttgtgacc ctgtcacaat aaccggttta
     7321 cccagatttt ccagcatgaa agagagcgcc gatgcggtat acgccatcgt gtcggtgccg
     7381 tgcagaataa caaaaccgtc atactcatcg tagtgcgctt tgatatctgc agcgatatgc
     7441 tgccagtctt ccggcgtcat atctgatgaa tccatcagcg gggcatattc atggatggta
     7501 aaatccggca tctccgggcg gtggaattcc ggcatcagcg ccagctgacg ctgaaggcgc
     7561 ccggacaccg ggatataccc tttatcggag cgctgcatac cgatagtacc gccggtatag
     7621 gcaacgtaaa ttgatttctt ttgcatgata atgttcagtc gtgtcgcgaa ggacgtatta
     7681 atgattatcg gatggcggct atgagcagac gccgacatcc ggtatggcta ttgatgaagc
     7741 attagcgcac gttcgcgcaa gtcaaacaga acgcataacg gttttgtgga tcgttaaatg
     7801 ccgccagttt atccccctcg gccttcaccg tgttggcggc ggaaacgagc ggcgccggga
     7861 gcatcgcctg aatggcctcc ggcagcatgg cgcgtacaga tccggtcata ctgtccatga
     7921 ccatatcaag gactgtcggt tcgtcctgat agtaatcaag atgccactgt ttcagtttcg
     7981 ccagctccgc cgctttggcg acggcgtcgt caaagtcgcc gagactgtcc accagaccat
     8041 tggctttcgc gtcttctccg gtccagacat ggccttgagc gattttgtca atctgctccg
     8101 gcgtacgctt acgcgcgtct gccaccagcg tgataaagcg tttgtagccg tactcaatac
     8161 tgagttgcat catctgctgc acttccggtg acagcgcttt agtcatcgaa atatccgcca
     8221 gcggcgaggt ggaaacgccg tcgctgtgta cgccaatcga cgacaggctg ttttctaccg
     8281 tattaattac gccgaagatg ccaattgaac ccgtcagcgt gctggggctg gccacgatat
     8341 agtttgccgg cgtagagatc cagtaaccgc cggaggccgc catgccgccc attgagacca
     8401 ccaccggttt gccagccgct cttgccgccg ccagttcggc gcggataact tcggaggcgt
     8461 tgacgctacc gcctgggcta ttgacgcgca gcacaatcgc tttcacttta ggatcaaggc
     8521 gtgcgtcgcg gatctgcgat gccgtagtgt cgccgccgac attccctggc gtttcttcgc
     8581 catccataat cgcgccattg gcgaaaataa ccgcaatagt accgccggta tccgcaggcg
     8641 ttttcagcga ataatcgtaa tagctgatcg cgcgatagtt attttcggtt ttgctccagc
     8701 caaactgctt cgtcagcgct ttttcaacat ctgcgctgga ggcgagggcg tccaccagtt
     8761 tatggtcgag cgcatatttg gcggtgtcac cgcccacgct ggttaacccg tcgataatag
     8821 cctgggcgcc ggggaagagt tgttgcggcg aaatctggcg attggcggaa acggtatgca
     8881 ggtagttctg ccacagttcg cctatccagc ggctgtcggc ctcgcgggcg gcgggcgaca
     8941 tatcgtcgcg gataaacggc tcgacggcgg atttataggt gccgacccgg aaaacgtggg
     9001 tagagacttt cagtttatcc agcagcgttt tgtagtacag gccattcgta gcgaagccgt
     9061 gaagatctac ctgaccctgt ggggaaagcc aaattttatt ggcgaaactg gcgaggtaat
     9121 actgaccctg gctgtagttt tcacccacgg cgaaaaccgg tttgccgcta tcgcggaatt
     9181 cgcgcagcgc tttaccgata tagcgcattg acggctgatc ggcaccggtg aagtttttca
     9241 gatccagaac gatacccgtg atgttacggt catctttcgc ctgacgaata gcgttgacga
     9301 tgtcaaacag ggagttttcc tgcagacggt cggagctggc gccaaataac tggcgtccca
     9361 gcgcgcccag acggtgattg gtggagggtt tatccacaat gacgccggaa atatccagca
     9421 gcaaagcgcc gcgcgccgtt tgctcactgt tgctgccgtt accgatctgc atccagatcc
     9481 caacgcccac caggaccaga aaaataaaga acaggttgag taccatttca cggacgaagt
     9541 tcaacactcg ccacgtccat ttaaaaaatc cggcaataaa tcgccacagg gttcgcatgt
     9601 attctcccta tctgagtaac aacgcttata ccttggtgag gataaagcat taagatgtgg
     9661 ctatcgtaat gacccatcag gcagttgtca gcaggaatca ctgcctgcgc tgtaacaaaa
     9721 tccgctcccg tgttaatttt gtgaataaat atcattgctg gagttaatca aatggatgca
     9781 ctagaactgc tggtcaaccg tcgcagcgcc tctcgtctcg cagaaccggc gcctgtcgga
     9841 gagcaattac agaacattct gcgggcggga atgcgtgttc ccgatcataa atctctacag
     9901 ccgtggcgtt tttttgtgat tgaaggagag gggcgcgacc gcttcagcgc cgtgcttgaa
     9961 caaggcgctg tcgctgccgg gggggatgag aaagcgatcg aaaaagcgcg taatgcgccg
    10021 tttcgcgcgc cgctgatcat taccgtggtg gcgaaatgcg aagaaaacca taaggttccc
    10081 gtgtgggaac aggagatgtc tgccggatgc gcggtgatgg cgatgcaaat ggcagcgatt
    10141 gcgcaagggt ttaatggtat ctggcgtagc ggcgcattaa cggagagcgc tatcgtgcgg
    10201 gaagcctttg agtgccgtcc tcaggataaa attgttggtt ttctctatct cggcacgccg
    10261 cagctcaaag cgtcaacgac gatcagtacc cccgacccca cgccgtttgt gcgttatttc
    10321 tgacgctgag ggataaaact gtctggattc tgagcaaagg cgcggtaatt cagacagtga
    10381 tacttaccac atcagggaat gagcgctacc atagcgcgaa tgcaatgaca ggagatgtcc
    10441 atgagcaagc aagccattcg tttaacgcaa tacagccacg gcgctggttg cggttgtaaa
    10501 atttccccta aagtgctgga gactatcctg catagcgagc aggcgaagtt cgtcgacccg
    10561 aatctgctgg tgggtaatga aacccgcgat gatgcggcag tttacgatct gggtaatggc
    10621 accagtatta tcagcaccac tgacttcttt atgccgatag tcgacaaccc gtttgatttt
    10681 ggccgcattg cggcaacaaa cgccatcagc gatatttttg cgatgggcgg caaaccgatt
    10741 atggcgatcg cgatccttgg ctggccgatt aataccctgt cgcccgatat tgcgcgtgaa
    10801 gtgaccgagg gggggcgttt tgcctgccgt caggccggta tcgcgctggc gggcggacac
    10861 tctattgacg ccccggagcc gatctttggt ctcgcggtca caggcgtagt gccgaccgaa
    10921 cgggtgaaga aaaacagtac cgcgcaggcg ggatgcaaac tctttctgac caaaccgttg
    10981 gggattggcg tgttgaccac cgccgagaaa aaatcgctgc ttaaacctga acatcagggg
    11041 ctggcgacgg aagtcatgtg tcggatgaac gttgctggcg cggcgtttgc caatatcgac
    11101 ggcgtaaaag ccatgactga cgttaccggt tttggtctgc tgggacacct gagcgagatg
    11161 tgccagggtg caggcgtaca ggcgatgctt tgctatcagg acatccctaa actgccgggc
    11221 gtggaagagt atattgctct gggcgccgta ccgggcggca cagagcgcaa cttcgccagc
    11281 tatggtcatc tgatgggcga catgtcgcgt gaagttcgta gcctgctgtg cgatccgcaa
    11341 acgtcaggcg gtctgctgtt ggcggtaacg ccggacgccg aagacgatgt taaagccacc
    11401 gcggcggaat ttggtatcga actgaccgcg attggcgaac tggtcgaggc ccgcggcggt
    11461 cgcgctatgg ttgagattcg ttaacctgat gcggttgttt attgccgaaa aaccgagtct
    11521 ggggcgcgcc attgcggatg tgctgccaaa accgcaccgt aaaggcgatg gttttattga
    11581 gtgcggaaac gggcaggtcg tcacctggtg tattggtcat ttgctggaac aggcgcagcc
    11641 ggatgcgtat gacagccgtt atgcgcgctg gaatctggct gacctgccta tcgtgccgga
    11701 aaaatggcag cttcagcctc gtccttccgt caccaaacag ctcaatgtga ttaagcgctt
    11761 tttgcatcaa gccggtgaaa ttattcacgc cggcgacccg gatcgcgaag ggcagcttct
    11821 ggttgatgaa gtgctggatt atctccagct tcctgccgaa aagcgccagc aggtacggcg
    11881 ttgtctgata aacgacctta acccgcaggc ggtcgagcgt gctatcgaca ggctgcgggc
    11941 gaacagcgac ttcgtgccgc tgtgcgtctc cgcgctggcg cgagcgcgag cggactggct
    12001 gtatggcatt aatatgaccc gtgcttacac gatcctgggc cgtaatgccg gctatcaggg
    12061 cgtgttatcc gtgggacgcg tgcagacgcc ggtactgggg ctggtggtgc ggcgagacga
    12121 agagattgag aacttcgtcg ccaaagactt ctttgaagtg aaggcgcaca tcgttacgcc
    12181 tgccgacgag cgttttaccg ctatctggca gccgagcgag gcgtgcgaac cttatcagga
    12241 tgaagagggg cgtttgcttc atcgtccgct ggcggagcat gtggtgaacc gaatcaacgg
    12301 tcagcctgcg ctggtaacca gttataatga taaacgggaa tcagaatccg cgccgctgcc
    12361 gttttcgctc tcgacgctac agattgaagc cgctaaacgt tttggcctga gcgcgcaaaa
    12421 cgtgcttgat atttgtcaga agctatatga aacccacaaa ctgattacct atccgcgttc
    12481 cgactgccgt tatctgccgg aagaacactt tgccggacgg caggcggtca tgaacgcgat
    12541 tagcgtccac gccccggatt tactgccgca gcctgtggtt aatcctgata cgcgcaatcg
    12601 ctgctgggat gacaaaaaag tggatgcgca ccacgcgatt atcccgacgg cgcgcagttc
    12661 ttctgtccat ctgacggaaa acgaagcgaa agtgtacacc ctgattgcgc gtcagtatct
    12721 gatgcagttc tgcccggacg cggtgtttcg taaatgcgtt attgaactgg aaatcgccaa
    12781 agggaaattt gtcgccaaag cgcgttttct ggcggaggcc ggttggcgga cgttactggg
    12841 cagtaaagag cgcgacgagg aaaacgacgg tacgccgctg tcggttgtcg ccaaaggtga
    12901 tgagttgctg tgtgaaaagg gggaagtggt cgaacgccaa acccagccgc cgcgtcattt
    12961 cactgatgcg acattgcttt ccgcgatgac cggaattgcc cgcttcgtgc aggataaaga
    13021 tctgaaaaag atcctgcgcg cgaccgatgg gctggggacg gaagccacgc gcgccgggat
    13081 tatcgaactg ctgttcaaac gtagctttct gaccaaaaaa gggcgctaca ttcattctac
    13141 cgatgctggc aaagcgttaa tacattcgct gccggagatg gcggcccgtc cagatatgac
    13201 cgcgcactgg gaatctgttt tgacgcaaat cagcgaaaag cagtgccgtt accaggattt
    13261 tatgcaaccg ctggtcggca cgttatatca gctgatcgat caggctaagc gcacgccggt
    13321 gaagcgtttc agagggatag tcgcgccagg cggcggagaa aagaaaaaga gcgcgccgcg
    13381 taagcgagcg ggcaaaaaaa gcccgcctgc tgaggagaca ggccgtcaga ccgaataagc
    13441 gtaaagccat ctggcctggc gacgggatta aatgacgccc tgcgccagca tggcgtcggc
    13501 gactttcacg aaaccggcga tgttggcgcc ctgaacgtag ttagtatgct tattgtcgcc
    13561 gccgtacttg acacaggcgt ggtggatatc cagcataata tgatgcagac gggcgtccac
    13621 tttctcggct ttccagctca accgcgcggc gttctgcgcc atttccagcc ccgatgtcgc
    13681 cacgccgccc gcgttggcgg ctttacccgg cgcaaacagt acgcccgcct caaggaagag
    13741 atcggtcgct tcaatcgtgg ttggcatatt tgccccttcc gccacggctt tcacgccatt
    13801 ggcaatcagt acgcgcgcgg cgtcaacgtc cagttcgttc tgcgtcgcgc atggcagggc
    13861 gatatccacc ggtacgctcc agggctgctg gccttccaga taggttaagc caaactcacg
    13921 ggcgtagtca gcgacgcgac cgtcacggct ggctttaatt tcacacagcc gcgccagctt
    13981 ctctggcgtg aagccacttt catcgaccac cgtcccgctc gaatccgacg cggtaaccac
    14041 gcgcgcgcca aaggccatcg ctttctcaat ggcgtattgc gctacgttgc cggagccgga
    14101 cacggcgacg cgcatccctt caaaaccgag accatgacgt ttaagcatcg cttcggtgaa
    14161 gtagaccagg ccatagcccg tcgcctccgg acgaatcagg ctgccgccga aggaaagccc
    14221 tttgccggtg aagacgcagg cgctgttatt ggaaagcttg cgcatcattc ccgccataaa
    14281 gcccacttcg cgcccgccca cgccgatatc cccggcaggc acgtcggtat ccggccctaa
    14341 atggcgatac agttcagtca tcagcgcctg gcagaaacgc atcacttcgc cttcgctttt
    14401 ccctttcgga tcgaaatcgc tgccgccttt accgccgccc atcggcaacg tggtgagggc
    14461 atttttaaag gtttgctcaa agccgaggaa cttaaggatg gaaaggttta ccgaaggatg
    14521 gaagcgcata ccgcctttat aggggccgat agcagagttg aactgcacgc gccaggcgcg
    14581 atttacctgc acctgatttt tatcgtccag ccacactacg cgaaactgga ttacgcgctc
    14641 tggttcaacc aaacgttcca gtaaagacat gtggcggtaa cgggggtttt gttcaagaaa
    14701 cggccacagg gtggtcatga cttcacggac ggcttgcgcg aactcggttt gatgcgggtc
    14761 gcgcttttgt acatggttga ggaacgattc ca
//
LOCUS       DAJVSD010000096        14782 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.096, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000096 DAJVSD010000000
VERSION     DAJVSD010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 14782)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14782)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14782
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.096"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            296..1864
                     /gene="cydA"
                     /locus_tag="OQP62_002374"
     CDS             296..1864
                     /gene="cydA"
                     /locus_tag="OQP62_002374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HCS1721910.1"
                     /translation="MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSG
                     KQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLM
                     AFFLESTFVGLFFFGWDRLSKVQHMCVTWLVALGSNLSALWILVANGWMQNPIAADFN
                     FETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAYYMLKGRDFAFAKR
                     SFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPASFTLFGIPD
                     QDKQENHLAIQIPYALGIIATRSVDTPVIGLKDLMVQHEERIRNGMKAYELLEQLRAG
                     STDQAVRDQFNSMKKDLGYGLLLKRYTPNVTDATEAQIQQATKDSIPRVAPLYFAFRI
                     MVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQP
                     WAIGKVLPTAVANSSLTVGDLLFSMFLICGLYTLFLVAELFLMFKFARLGPSSLKTGR
                     YHFEQSTVTSQPAR"
     gene            1880..3019
                     /gene="cydB"
                     /locus_tag="OQP62_002375"
     CDS             1880..3019
                     /gene="cydB"
                     /locus_tag="OQP62_002375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HCS1721911.1"
                     /translation="MIDYEVLRFIWWLLVGILLIGFAVTDGFDMGVGMLTRFLGRNDT
                     ERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPV
                     GFDYRSKIEDPRWRNMWDWGVFIGSFVPPLVIGVAFGNLLQGVPFHVDEYLRLYYTGN
                     FFQLLNPFGLLAGIVSVGMIITQGATYLQMRTVGELHLRARATSQIAALVTLVCFALA
                     GVWVMYGIDGYVVTSAIDHHAASNPLTKEVAREAGAWLVNFNNAPILWLVPALGVVLP
                     LLTILTSRMEKGAWAFLFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQ
                     MTLNLMTWVAAVFVPIILIYTSWCYWKMFGRITKEHIESNTHSLY"
     gene            3034..3147
                     /gene="cydX"
                     /locus_tag="OQP62_002376"
     CDS             3034..3147
                     /gene="cydX"
                     /locus_tag="OQP62_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-I oxidase subunit CydX"
                     /protein_id="HCS1721912.1"
                     /translation="MWYFAWILGTLLACAFGIITALALEHVEAGKTGQEES"
     gene            3284..3565
                     /gene="ybgE"
                     /locus_tag="OQP62_002377"
     CDS             3284..3565
                     /gene="ybgE"
                     /locus_tag="OQP62_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyd operon protein YbgE"
                     /protein_id="HCS1721913.1"
                     /translation="MKYIYAVMDKRLLRALSFVMAIVLAGCMFWDPLRFAARTSTLEI
                     WHGLLLMWAVCAGIIHGVGFRPESVHWQGIFCPLLADIVLIVGLIFFFL"
     gene            3794..4198
                     /gene="ybgC"
                     /locus_tag="OQP62_002378"
     CDS             3794..4198
                     /gene="ybgC"
                     /locus_tag="OQP62_002378"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HCS1721914.1"
                     /translation="MNKYMFRWPIRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHH
                     FSQQVLLAERVAFVVRKMTLEYYAPARLDDMLEVQTEITSMRGTALVFTQRIVNAENT
                     LLNEAEVLIVFVDPLKMKPRALPKSIVAEFKQ"
     gene            4195..4887
                     /gene="tolQ"
                     /locus_tag="OQP62_002379"
     CDS             4195..4887
                     /gene="tolQ"
                     /locus_tag="OQP62_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolQ"
                     /protein_id="HCS1721915.1"
                     /translation="MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNA
                     AAREAEAFEDKFWSGIELSRLYQESQGRRDSLSGSEQIFYSGFKEFVRLHRANSHAPE
                     AVVEGASRAMRISMNRELETLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVK
                     QATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILH
                     RQAFTVSESNKG"
     gene            4891..5319
                     /gene="tolR"
                     /locus_tag="OQP62_002380"
     CDS             4891..5319
                     /gene="tolR"
                     /locus_tag="OQP62_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin uptake protein TolR"
                     /protein_id="HCS1721916.1"
                     /translation="MARTRGRGRRELKSEINIVPLLDVLLVLLLIFMATAPIITQSVE
                     VDLPEANQSQAVSSNDDPPVIIEVSGVGQYSVVVDKDRMDQLPSEQVIAEVKRHLQAN
                     PKTVFLIGGAKEVPYDEIIKALNLLHSAGVKSVGLMTQPI"
     gene            5384..6514
                     /gene="tolA"
                     /locus_tag="OQP62_002381"
     CDS             5384..6514
                     /gene="tolA"
                     /locus_tag="OQP62_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HCS1721917.1"
                     /translation="MSKATEQNDKLKRAIIISAVLHIILFAVLIWSSFDEHIEASAGG
                     GGGSAIDAVMVDPGAVVQQYNRQQDQQASARGAEEERKKLQQQQAEELQQKQAAEQER
                     LKQLEKERLAAQEQQKQAEEAAKLAQQQQQAEEAAKAAADAKKKAEAEAAKAAADAKK
                     KAEAEAAKAAADAKKKAEAEAAKAAAEAKKKAEAEAAKAAADAKKKADAEAAKAAAEA
                     KKKADAAAAKAAADAKKKAAAEKAAAAEGVDDLLGDLSSGKNAPKTGGGAKGNGQPSK
                     DSGTSGANGGTTGADISAYAKQIQVAIQSRLYDASLYQGKQCVLHISLAPDGSLKSIT
                     SEGGDPALCQAALMATKTAKIPKPPSQAVYEKIKDAKLDFKL"
     gene            6638..7930
                     /gene="tolB"
                     /locus_tag="OQP62_002382"
     CDS             6638..7930
                     /gene="tolB"
                     /locus_tag="OQP62_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001646851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HCS1721918.1"
                     /translation="MKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKW
                     AGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQQPATAQEVQPTAWSALGIDAVIVG
                     LVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK
                     GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT
                     FESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLA
                     SGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQVYKMNINGGAAQRITWEGSQN
                     QDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYS
                     SSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSPYL"
     gene            7965..8489
                     /gene="pal"
                     /locus_tag="OQP62_002383"
     CDS             7965..8489
                     /gene="pal"
                     /locus_tag="OQP62_002383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HCS1721919.1"
                     /translation="MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGGMLNGAGTG
                     MDANGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAAMLDAHANFLRSNPSY
                     KVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHD
                     EAAYAKNRRAVLVY"
     gene            8499..9287
                     /gene="cpoB"
                     /locus_tag="OQP62_002384"
     CDS             8499..9287
                     /gene="cpoB"
                     /locus_tag="OQP62_002384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein CpoB"
                     /protein_id="HCS1721920.1"
                     /translation="MSSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQ
                     LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVMERQKQIMLQLGSLN
                     NGGAAQPAAGDQSGAATAATPAPDAGTATSGAPVQSGDANTDYNAAIALVQDKSRQDD
                     AIVAFQNFIKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA
                     MYKVGVIMQDKGDTAKAKAVYQQVINKYPGTDGAKQAQKRLNAM"
     gene            9452..9524
                     /locus_tag="OQP62_002385"
     tRNA            9452..9524
                     /locus_tag="OQP62_002385"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9485..9487,aa:Lys,seq:ttt)
     gene            9670..9745
                     /locus_tag="OQP62_002386"
     tRNA            9670..9745
                     /locus_tag="OQP62_002386"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9703..9705,aa:Lys,seq:ttt)
     gene            10158..11201
                     /gene="nadA"
                     /locus_tag="OQP62_002387"
     CDS             10158..11201
                     /gene="nadA"
                     /locus_tag="OQP62_002387"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000115355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HCS1721921.1"
                     /translation="MSVMFDSQAAIYPFPPKPTPLNDDEKQFYREKIKRLLKERNAVM
                     VAHYYTDPEIQQLAEETGGCISDSLEMARFGAKHAASTLLVAGVRFMGETAKILSPEK
                     NVLMPTLAAECSLDLGCPIDEFSAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAV
                     ELIEHLDSLGEKIIWAPDRHLGNYVQKQTRADVLCWQGACIVHDEFKTQALTRLKKIY
                     PDAAILVHPESPRSIVEMADAVGSTSQLIKAAKTLPHRQLIVATDRGIFYKMQQAVPD
                     KELLEAPTAGEGATCRSCAHCPWMAMNGLKAIAEGLEQGGAAHEIQVDAALRESALLP
                     LNRMLDFAATLRV"
     gene            11226..11945
                     /locus_tag="OQP62_002388"
     CDS             11226..11945
                     /locus_tag="OQP62_002388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HCS1721922.1"
                     /translation="MDFFSTHNILIHIPIGAGGYDLSWIEAVGTIAGLLCIWLASLEN
                     ISNYFFGLVNVTLFAIIFFQIQLYASLLLQLFFFAANIYGWYAWSRQTKDNEAELKIR
                     WLPLPKAMAWLAICVIAIGLMTRYIDPVFAVLTRVAVAIMQMLGLQVTMPVLQPDAFP
                     FWDSCMMVLSIVAMILMTRKYVENWLLWVIINVISVVIFALQGVYAMSLEYLILTFIA
                     VNGSRLWINSARERGSRALSR"
     gene            complement(11942..12880)
                     /gene="zitB"
                     /locus_tag="OQP62_002389"
     CDS             complement(11942..12880)
                     /gene="zitB"
                     /locus_tag="OQP62_002389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family zinc transporter ZitB"
                     /protein_id="HCS1721923.1"
                     /translation="MAHSHSHADSHLPKDNNARRLLFAFIVTAGFMLLEVVGGILSGS
                     LALLADAGHMLTDAAALLFALLVVQFSRRPPTVRHTFGWLRLTTLAAFVNAIALVVIT
                     LLIVWEAIERFYTPRPVAGNLMMVIAVAGLLANLFAFWILHRGSDEKNLNVRAAALHV
                     MGDLLGSVGAIVAALIIIWTGWTPADPILSILVSVLVLRSAWRLLKDSVNELLEGAPV
                     SLDINALQRHLSREIPEVRNVHHVHVWMVGEKPVMTLHAQVIPPHDHDALLERIQDFL
                     MHEYHIAHATIQMEYQMCHGPDCHLNQTPSGHVHHH"
     gene            complement(12991..13377)
                     /locus_tag="OQP62_002390"
     CDS             complement(12991..13377)
                     /locus_tag="OQP62_002390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbgS-like family protein"
                     /protein_id="HCS1721924.1"
                     /translation="MKMTKLTTLLLTATLGLASGAALAAESNAQSSNGQANSAANAGQ
                     VAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRC
                     PDINKKVETGNGVNNDVNTKTDGTTQ"
     gene            13697..14749
                     /gene="aroG"
                     /locus_tag="OQP62_002391"
     CDS             13697..14749
                     /gene="aroG"
                     /locus_tag="OQP62_002391"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001109196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HCS1721925.1"
                     /translation="MNYQNDDLRIKEINELLPPVALLEKFPATENAANTVAHARKAIH
                     KILKGNDDRLLVVIGPCSIHDPAAAKEYAARLLALRDELQGELEIVMRVYFEKPRTTV
                     GWKGLINDPHMDNSFQINDGLRIARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWG
                     AIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHS
                     AIVNTSGNGDCHIILRGGKAPNYSAQHVAEVKEGLIKAGLTPQVMIDFSHANSCKQFQ
                     KQMEVCADVCQQIAGGEKAIIGVMVESHLVEGNQSLESGQPLTYGKSITDACIGWEDT
                     DALLRQLSAAVKARRG"
BASE COUNT         3505 a         3598 c         4133 g         3546 t
ORIGIN      
        1 gtccgtgatc aaattccctg aaaagcgata gattagccat aaattgatcg ctgtcgaaaa
       61 aagcaaatct gacccactaa aaacctgttt attgtaaggg ttttacggcg taatatattt
      121 gcgggatcaa tttgggtttt ttattaacat gtttgtaact tttcatcatt actgtttcct
      181 tcccgagggg atagtacgat ggaaggccgc aaataaattt gtattggggc atgcgtgtga
      241 ccctttctaa cggggttcac tctcggagtc ttcatgcgat gagcaaggag tcatgatgtt
      301 agatatagtc gaactgtcgc gcttacagtt tgccttgacc gcgatgtacc acttcctgtt
      361 tgtgccgcta acgctcggta tggcgttcct gctggccatt atggaaacgg tatacgtcct
      421 ttccggcaaa cagatttata aagatatgac caagttctgg ggcaagttgt ttggtatcaa
      481 ctttgctctg ggtgtggcta ccggtttgac catggagttc cagttcggga caaactggtc
      541 gtactactcc cactatgttg gggacatctt cggtgcgccg ctggccatcg aaggtttgat
      601 ggccttcttc ctcgaatcca cctttgtagg tctgttcttc ttcggctggg atcgtctaag
      661 taaagttcag catatgtgcg tcacctggct ggtggctctg gggtccaacc tctccgcgtt
      721 gtggattctg gtagcgaacg gctggatgca aaacccaatc gctgcggatt tcaatttcga
      781 aaccatgcgt atggaaatgg tgagcttctc tgaactggtg ctgaacccgg tagcacaggt
      841 gaaatttgtt cacactgtgg cgtccggcta tgtcaccggc gcgatgttca tcctcggtat
      901 cagcgcttac tacatgctga aaggtcgtga cttcgccttt gctaaacgct cctttgctat
      961 tgccgccagc ttcggtatgg ctgccgtact gtccgttatc gtactcggtg acgaatccgg
     1021 ttacgaaatg ggcgacgtgc agaaaaccaa gctcgctgcg attgaagctg aatgggaaac
     1081 gcaacctgct ccggcctcct ttaccctgtt cggcattcct gaccaggaca aacaggaaaa
     1141 ccatctggcg attcagatcc cttatgcgct cggcattatc gctacgcgtt ccgtggacac
     1201 gccggttatt ggcctgaaag atctcatggt tcagcatgaa gagcgtatcc gtaacgggat
     1261 gaaagcttat gagctgctgg agcagctgcg cgccggttct accgaccagg ccgttcgcga
     1321 ccagtttaac agcatgaaga aagatctcgg ttacggcctg ctgctgaaac gctatacgcc
     1381 taatgtgact gacgcgaccg aagcgcagat ccagcaagcg acgaaagatt ctattcctcg
     1441 cgttgcgccg ctgtacttcg ctttccgtat catggtggcg tgcggcttcc tgctgctggc
     1501 gattatcgca ctttccttct ggagcgtgat tcgtaaccgc atcggtgaga aaaaatggct
     1561 gttgcgtgcg gcgctgtacg gtattccact gccgtggatt gcggttgaag caggttggtt
     1621 cgtcgccgag tatggtcgtc agccgtgggc gatcggcaaa gtgttgccga cagccgtggc
     1681 gaactcatcg ctgaccgtgg gcgatctgct gttctccatg ttcctgattt gcggcctgta
     1741 taccctgttc ctggtggcag aattgttcct gatgttcaaa tttgcacgcc ttggcccaag
     1801 cagcctgaaa accggtcgct atcactttga gcagtccacc gtgacttctc agccggcacg
     1861 ctaagacagg agtcgtcaaa tgatcgatta tgaagtacta cgttttatct ggtggctgct
     1921 ggttggcatt ttgctaattg gtttcgccgt caccgatggg ttcgacatgg gggtggggat
     1981 gctcacccgt ttcctcggtc gtaacgatac cgaacgtcga attatgatta actctatcgc
     2041 cccgcactgg gacggtaacc aggtgtggtt gatcaccgcg ggcggcgcgt tgtttgctgc
     2101 ctggccgatg gtttacgccg cggcgttctc cggtttctat gtggcgatga tcctggtgct
     2161 ggcgtctttg ttcttccgtc cggtcggttt tgattaccgt tccaagattg aagacccgcg
     2221 ctggcgcaac atgtgggact ggggcgtgtt catcggtagc tttgtgccgc cgctggtgat
     2281 tggcgtggcc tttggcaacc tgttgcaggg cgtaccgttc catgtggatg agtatctgcg
     2341 tctgtactat accggtaact tcttccagtt gctgaacccg tttggtctgc tggcgggtat
     2401 cgtaagcgta gggatgatca tcacgcaggg ggcgacttac ctgcaaatgc gtaccgttgg
     2461 cgaactgcac ctgcgcgcgc gcgccacctc gcagattgcg gcgctggtga cattagtgtg
     2521 ctttgcgctg gcgggcgttt gggtaatgta tggtattgat ggttatgtcg tgacatccgc
     2581 gattgatcat catgctgcct ctaacccgct gactaaagaa gtggcgcgcg aagccggcgc
     2641 ctggctagtg aactttaata atgctccgat cctgtggttg gttccggctc tgggcgtggt
     2701 tctgccgctg ctgactatcc tgacttcccg tatggagaaa ggcgcgtggg cattcctgtt
     2761 ctcttcgctg acgttggcct gcattattct gacggcgggt atcgctatgt tcccatttgt
     2821 gatgccgtcc agcacgatga tgaatgccag tctgaccatg tgggatgcga catccagcca
     2881 gatgacgctg aacctgatga cctgggttgc ggcggtgttc gtaccgatta ttctgatcta
     2941 caccagctgg tgttactgga aaatgttcgg tcgtatcact aaagaacata ttgaaagcaa
     3001 cacccactct ctgtactaag taaggagctt aaaatgtggt atttcgcatg gattctggga
     3061 acgcttcttg cctgtgcatt cgggatcatt accgccctgg cgcttgagca cgttgaagcg
     3121 ggtaaaaccg gtcaagaaga aagctaatga ttcatattgt cgctatgcaa tatacaaaat
     3181 catttaagtt gcatcgcggc ggcaaggctg cgaatcccca ggagcttaca tcagtaagtg
     3241 actggggtga gcagccgcag ccaacaaaga ggcagcttag aggatgaagt atatttatgc
     3301 ggtaatggac aagcgcctct taagggcgct ttccttcgtg atggcgatag tgctggcagg
     3361 atgtatgttc tgggacccgt tacggtttgc cgccaggacc agcacgcttg aaatctggca
     3421 cggattattg ctgatgtggg cggtttgcgc aggcataatc cacggcgtgg gttttcgccc
     3481 tgaatccgta cactggcaag ggattttttg tccgctcctt gcggatatcg tccttatcgt
     3541 cggcctgatt ttcttcttct tgtgaataag aaacctcctt aaaaatatag gggcttgcat
     3601 aagcccatat atttttactc tcccttaact tccccccatt cccaagcctc attcctacgc
     3661 gtatagtagc aacgtttaaa agctctactt ttgttgcatt accgggatgt aaagtgaata
     3721 caaggcgata tacaacggca ttcttgaggc attacggcgg caagcggatg acgccaacaa
     3781 agaggctgca gggatgaata agtatatgtt tcgatggcca attcgagttt attacgaaga
     3841 cacggacgcc ggcggtgtgg tttatcacgc cagctatgtc gctttttatg aaagagcgcg
     3901 cacggagatg ctgcgtcacc atcacttcag ccaacaggtg ctgctggcgg agcgggtcgc
     3961 ctttgtggtg cgcaagatga cgctggaata ctatgcgcct gcgcggctcg acgatatgct
     4021 tgaagttcaa acagaaatta cgtcaatgcg tggcaccgct ttggttttca cgcaacgcat
     4081 tgtcaacgca gagaacacgc tgctaaatga agcagaggtt ctgattgttt tcgttgatcc
     4141 actcaaaatg aagcctcgtg cgcttcctaa gtctattgtc gcggagttta agcagtgact
     4201 gacatgaata tccttgattt gttcctgaag gcaagccttc tagttaaact tatcatgttg
     4261 attttgattg gtttttcaat agcatcctgg gccatcatta tccagcgaac gcgtatcctg
     4321 aacgccgctg cgcgtgaggc ggaagcgttt gaagataaat tctggtccgg aatcgaacta
     4381 tcgcgtctgt accaggaaag ccaggggaga cgcgatagtc tgtcgggctc ggaacaaatc
     4441 ttttatagcg ggttcaaaga gtttgtccgg ctccatcgcg ccaacagcca tgcgccggag
     4501 gcagtggtag agggggcgtc gcgtgcgatg cgcatctcca tgaaccgaga gctggaaacg
     4561 ctggaaacgc atatcccgtt tcttggcacg gtaggctcta tcagtcctta tatcggtctg
     4621 tttggcaccg tatgggggat tatgcatgcg tttatcgccc tgggtgcggt gaaacaggcg
     4681 actctgcaaa tggttgcgcc gggtattgcc gaagcattga ttgccacggc gattggtctg
     4741 tttgccgcta tccctgcggt tatggcttac aaccgactga atcagcgcgt gaacaagctg
     4801 gaactgaatt acgacaactt tatggaagag tttaccgcga ttctgcaccg ccaggcgttt
     4861 accgtaagcg aaagcaacaa ggggtaagcc atggccagaa cgcgtggacg aggtcgtcgc
     4921 gaacttaagt ccgaaatcaa tatcgtaccg ctactcgacg tactgttggt gctgctgctg
     4981 atctttatgg caaccgcgcc gatcattacc cagagcgtgg aagtcgactt accggaggcg
     5041 aatcagtcgc aggcggtcag tagtaacgac gatccgccgg tcattattga ggtttccgga
     5101 gtagggcaat acagcgtagt ggttgataaa gatcgaatgg atcaactgcc gtctgaacag
     5161 gtgatcgcag aagtaaagcg tcatctgcag gctaatccga aaacagtctt tttaatcggc
     5221 ggcgcgaaag aggtgccgta cgatgaaata attaaagcgc tgaacttgtt acacagcgcg
     5281 ggcgtaaaat cggttggctt aatgacgcag ccaatctgaa gtctgcgtcc cgttggcttg
     5341 aaagacggcg agtaacaggc gaacagtttt ttgggaaccg agagtgtcaa aggcaaccga
     5401 acaaaacgac aagctcaaac gggcgataat tatttcagcc gtgctgcata tcatcttatt
     5461 tgcagtgctg atctggagtt cgtttgatga gcatatagag gcttctgccg gcggcggcgg
     5521 cggttccgct atcgacgcgg tgatggtcga tcctggcgcc gttgtgcagc agtacaaccg
     5581 tcagcaggat caacaggcca gtgccagagg cgcggaagaa gagcgtaaaa agctgcaaca
     5641 gcagcaagca gaggagctgc agcagaagca ggctgctgaa caggagcggt tgaaacaact
     5701 tgagaaagaa cgtttagcgg ctcaggagca gcaaaagcag gctgaagaag cggcaaaact
     5761 ggcgcaacag cagcaacagg ccgaagaagc ggcgaaagcg gcggcggacg cgaagaagaa
     5821 agcggaggcc gaggcggcga aagcggcggc ggacgcgaag aagaaagcag aggccgaggc
     5881 ggcgaaagcg gcggcggacg cgaagaagaa agcagaggcc gaagcggcga aagcagcggc
     5941 ggaggcgaag aagaaagcgg aggccgaagc ggcgaaggca gcggcggacg ctaagaagaa
     6001 agcggatgcc gaggcggcga aagcggcggc ggaggcgaag aagaaagcgg atgccgcggc
     6061 ggcgaaagca gcggcggacg ctaagaagaa agcggctgcc gaaaaagcgg ccgccgcaga
     6121 aggcgtcgac gatctgcttg gcgatctcag ctcgggtaag aatgcgccga aaaccggcgg
     6181 cggcgcgaaa gggaatggtc agccatcgaa agatagcggt acatcgggcg ctaacggtgg
     6241 gacgacaggc gctgatatca gcgcctacgc gaaacagatt caggtcgcca ttcagagccg
     6301 tctgtatgat gcgagcctgt atcagggcaa acaatgtgtc ttgcatatta gcctggcgcc
     6361 ggatggctca ttaaaaagca ttacgtctga gggcggcgat ccggcgcttt gtcaggcggc
     6421 gttaatggcg acaaaaaccg cgaaaattcc taaaccgcca agccaggctg tttatgagaa
     6481 aataaaggat gccaaactag actttaaact gtagatactt ttctttatgg aagttggagc
     6541 ggttgagttg ttactggtcc tggtggtttt gtgtatttga gtttgttaac attctgctaa
     6601 attatcgtgg gtcgcaggcc caggtatggg agatatgatg aagcaggcat tacgagtagc
     6661 atttggtttt ctgatgctgt gggcggcagt gctgcacgca gaagtccgta tcgagatcac
     6721 ccagggggtg gactcggcgc gaccgattgg cgttgtgcct tttaaatggg ccgggccggg
     6781 cgctgcgcct gaagatatcg gcggcatcgt ggcggcagat ttacgcaata gcggtaaatt
     6841 taatccgtta gaccggtccc gactgccgca gcagccagcc accgctcagg aagttcagcc
     6901 taccgcatgg tctgcgctgg gtattgatgc cgtcatcgtt ggactggtca cgccgaatcc
     6961 ggacggttcg tacaatgttg cttatcagct ggttgacact ggcggtgcgc cggggactgt
     7021 actggcgcaa aactcctata aagtgaacaa gcagtggctg cgttatgcag gccacaccgc
     7081 cagtgacgaa gtctttgaaa aactgacggg cattaagggc gcgttccgta ctcgtatcgc
     7141 ctatgtggta cagactaacg gcggtcagtt cccgtatgaa ctgcgtgtgt cggattacga
     7201 tggctacaat cagttcgtag tgcaccgttc tccgcagccg ttgatgtctc cggcgtggtc
     7261 tccggacggc tcaaaactgg cttacgtgac ttttgaaagc ggtcgctccg cgctggttat
     7321 ccagacgctg gcaaacggcg cagtgcgtca ggttgcgtcc ttcccgcgtc acaacggcgc
     7381 gccggccttc tcgccggatg ggacgaaact ggcgttcgcg ttatcgaaaa ccggaagtct
     7441 gaacctgtac gttatggatc tcgcctccgg tcagattcgt cagataacgg acgggcgtag
     7501 caacaatacg gagccgacct ggttcccgga cagccagact ctggccttta cttctgacca
     7561 ggctggacgt ccgcaagtgt ataaaatgaa cattaacggc ggtgcggcgc agcgtattac
     7621 ctgggaaggt tcgcaaaacc aggatgcgga tgtcagcagc gacggtaaat ttatggtaat
     7681 ggtaagctca aataacgggc agcagcacat tgccaaacaa gatctggtga cgggtggcgt
     7741 acaggttctg tcgtcaacgt tcctggatga aacgccaagt ctggcaccta acggcacgat
     7801 ggtaatctac agctcttctc aggggatggg atctgtgctg aatttggttt ctacagatgg
     7861 gcgtttcaaa gcgcgtcttc cggcaactga tggtcaggtg aaatcgcctg cctggtcgcc
     7921 gtatctgtga taataattaa ttgattacta aaggaattaa agaaatgcaa ctgaacaaag
     7981 tgctgaaggg cctgatgatt gccctgcctg ttatggcaat cgcggcatgt tcttccaaca
     8041 agaacgccag caatgacggt agcgaaggcg gcatgctgaa cggcgccggc actggtatgg
     8101 acgctaacgg caacggcaac atgtcatctg aagagcaagc gcgtctgcag atgcagcagc
     8161 tgcagcagaa caacatcgtt tacttcgatc tcgacaagta cgatatccgt tctgacttcg
     8221 cggcaatgct ggatgcgcac gctaacttcc tgcgtagcaa cccgtcttac aaagtcaccg
     8281 tagaaggtca cgcggacgaa cgcggtactc cggagtacaa catctccctg ggcgaacgtc
     8341 gtgctaacgc cgttaaaatg tacctgcagg gtaaaggcgt ttccgctgac cagatctcca
     8401 tcgtttctta cggtaaagaa aaacctgccg tactgggcca cgacgaagcg gcttacgcta
     8461 agaaccgtcg cgctgtactg gtttactaag agaattgcat gagcagtaac ttcagacatc
     8521 acctgttgag tctgtcgtta ctggttggca tagcggcccc ttgggccgct tttgctcagg
     8581 cgccaatcag tagtgtcggc tcaggctcgg tcgaagaccg cgtcactcaa cttgagcgta
     8641 tctctaacgc tcacagccag cttttaaccc aacttcagca gcagctctcc gataatcagt
     8701 ctgatatcga ttctttgcgc ggccaaatcc aggaaaatca gtatcaactg aatcaggtga
     8761 tggagcgcca gaagcaaatt atgctgcagc tggggagttt aaataatggc ggcgcagcgc
     8821 agccagcagc tggcgaccag agcggggcgg caaccgctgc gacccccgct ccggatgccg
     8881 gtacggcaac ctcaggggcg ccggtacaaa gtggcgatgc gaataccgat tacaatgcgg
     8941 caattgcgct ggtgcaggat aagtctcgcc aggatgatgc gattgtggcg tttcagaact
     9001 tcatcaagaa ataccctgat tctacttatc agccgaacgc caattattgg ctgggccagt
     9061 tgaattacaa caagggtaaa aaagatgacg ccgcctatta tttcgcctcg gtagtaaaaa
     9121 actatcctaa gtcgccgaag gctgcggacg cgatgtacaa agttggcgtt atcatgcagg
     9181 acaaaggtga tacggcaaaa gcgaaagcgg tttatcagca ggtgattaac aaatatcctg
     9241 gcactgatgg cgcgaaacag gcgcagaagc gtcttaacgc gatgtaatgc gtaccatgcg
     9301 accagaaaac gccttttttc tggtcgcgtc gtgcgattcc taagcagttg agccctctgc
     9361 gtcgaaattt ttgttgcgct caaatctgaa atcagtaata tatgccgccg ttgccacggg
     9421 atattaaaca actcgaaagc aacgtaaaag tgggtcgtta gctcagttgg tagagcagtt
     9481 gacttttaat caattggtcg caggttcgaa tcctgcacga cccactaatt taacatcaaa
     9541 ctcagatgtt gaacgtgaag gataacgttg cgtcagcaac ggcccgtagg gcgaggcgaa
     9601 gccgagtcat cctgcacgac ccaccatctt tagatggtcc gagtaaaatc tttcaggcag
     9661 cacccgtatg ggtcgttagc tcagttggta gagcagttga cttttaatca attggtcgca
     9721 ggttcgaatc ctgcacgacc caccaatata caaggtggta actggtagag aacgtgaagg
     9781 ataatgttgc tttagcaacg gcccgaaggg cgaggcgaag ccgagtcatc ctgcacgacc
     9841 caccatcctg aatgattgaa gcagtaaccc ttatccaagg ggtcgttagc tcagttggta
     9901 gagcagttga cttttaatca attggtcgca ggttcgggtc ttgcctgatg cgctgcgctt
     9961 atcaggccta cagacggcac cgctcacgta ggccagataa gacgttacgc cgccatcaga
    10021 tacggactac gtaattattg tgactttcct tattgaatca gctatcttgt ttagcatata
    10081 aaacaaattg accgattgtg gcgtttatta cgctttcatt cggttgtttc gttaagtcag
    10141 taaaacgaga agccacgatg agcgtaatgt ttgactcaca agccgcaatc tacccgttcc
    10201 cgccgaaacc aacgccgttg aacgacgatg aaaagcaatt ttatcgtgag aaaatcaagc
    10261 gtttgctcaa agagcgcaat gccgtcatgg tggcgcacta ctacaccgat ccggaaattc
    10321 aacagttagc agaagaaacc ggcggctgta tttccgactc gctggaaatg gcccgtttcg
    10381 gcgcgaagca cgccgcatcc acgttactgg tagcgggcgt acggtttatg ggggaaaccg
    10441 ccaaaatcct cagcccggaa aaaaacgttc ttatgcctac gctggcggcg gaatgttcgc
    10501 tggatttagg ctgcccaata gacgaattta gcgctttttg tgatgcgcac cctgacagaa
    10561 ccgtagtggt ctatgctaac acctcggctg ctgttaaagc gcgtgcggac tgggttgtga
    10621 cctccagtat cgccgtagaa ctgattgagc atctggatag tttgggggaa aaaattatct
    10681 gggcgccgga cagacacctg gggaattacg tgcaaaaaca gaccagggcc gatgtactgt
    10741 gttggcaagg ggcgtgtatc gtgcatgacg agtttaaaac ccaggcgttg acccgtttaa
    10801 aaaaaatcta tcccgatgcc gctattctgg ttcaccctga atcgccgcgg tccattgtcg
    10861 agatggccga tgcggtgggc tccaccagtc agcttattaa ggcggcaaaa acgctgccgc
    10921 acagacagct tatcgtcgcg accgatcgcg gcatcttcta caaaatgcag caggcggttc
    10981 cggataaaga gttgcttgaa gcaccaacgg cgggcgaagg ggcaacctgt cgcagctgcg
    11041 cgcattgtcc gtggatggcg atgaacggcc tgaaagccat tgctgaaggg ctggagcagg
    11101 gaggcgcggc gcatgaaata caggttgatg cggcgctacg cgagagcgca ttacttcccc
    11161 tcaaccggat gctggatttt gcggctacac ttcgggtgta aagacggaaa tctttggggg
    11221 agagaatgga tttttttagt acgcacaaca tactgattca tattccgatt ggcgctggcg
    11281 ggtacgatct ctcatggatc gaagcggtag gaaccatcgc cggcctgctc tgtatttggc
    11341 ttgccagtct ggagaatatc agcaactact tttttggact ggttaacgtc accctgtttg
    11401 cgattatttt ctttcagatc cagctttatg ccagcctgtt gctgcaactc tttttctttg
    11461 ccgccaatat ttatggctgg tatgcgtggt cgcggcaaac aaaggataat gaggccgagc
    11521 ttaaaatacg ctggctgccg ttgccaaaag caatggcatg gctggcgata tgtgtgatag
    11581 ctatcggttt gatgacgcga tatatcgatc ccgtattcgc cgtcctgacg cgcgtggccg
    11641 tcgccattat gcagatgctg gggttacagg tgacaatgcc tgtactgcaa ccggacgctt
    11701 tcccgttctg ggactcttgc atgatggtgc tgtctatcgt ggcgatgatt ttgatgacac
    11761 gcaaatatgt cgaaaactgg ctcctgtggg tgataatcaa cgtaatcagt gtggtgattt
    11821 ttgctttgca gggcgtctat gcgatgtcgc tggaatatct gatcctgaca tttatcgccg
    11881 tgaacggtag tcgcctgtgg ataaacagcg cgcgggagcg aggatcgcgc gcgctttccc
    11941 gttaatggtg atgaacatgc ccggatggcg tctgattcag gtgacagtcc gggccgtgac
    12001 acatttgata ctccatttga atcgtagcgt gcgcaatatg gtattcgtgc atcaggaaat
    12061 cctggatacg ttccagcagc gcatcatggt cgtgtggcgg aatgacctga gcgtgcaatg
    12121 tcatgactgg tttttcgccg accatccaga catgcacatg gtgtacgttg cggacttcgg
    12181 ggatttcccg gcttaaatgg cgctgtaagg cattaatatc cagtgaaacc ggcgcgcctt
    12241 ccagcaattc gttgacgcta tcttttaaca aacgccaggc gctgcgtagt accagtaccg
    12301 aaaccagaat agagagaatc gggtccgctg gcgtccagcc cgtccagata atgatcaacg
    12361 cggcgactat tgcgccgacg gaacccagca aatcgcccat cacatgtagc gcggcagcgc
    12421 gcacgttcag gtttttttca tcgcttcccc gatggagtat ccagaacgca aacaggttcg
    12481 ccagcagacc cgcgaccgca atcaccatca tcagattgcc cgccaccgga cgtggcgtgt
    12541 aaaagcgctc tatcgcttcc cagacaatga gaagggtaat gaccaccaac gcaatggcat
    12601 tcacaaaggc cgccagtgtg gtgagtctta gccagccaaa agtgtggcga acagtcgggg
    12661 ggcgacggga aaattgaacc accagcagcg caaagagaag agccgccgcg tcggtgagca
    12721 tatgtcccgc atccgccaac aacgccagag agccggagag tatcccgccc accacctcaa
    12781 ggagcataaa tccggcagtg acgataaagg cgaaaagcag gcgacgagca ttattatctt
    12841 tcggcaggtg tgaatcggca tgagagtgtg agtgcgccat aacgtcattc ctttgttatt
    12901 ctcatcaata ctgtagatat catactgatt tttcgctgac aaaataaaaa ggagagcgaa
    12961 agctctcccg ttatcagact tttttctgaa ttactgcgtg gtaccgtcgg ttttggtatt
    13021 cacgtcatta ttgacgccat taccggtttc cactttttta ttaatatccg ggcagcgacc
    13081 atctttacac atggtatttt tatgctcttc atccttggtc attccgtcat gattcatggt
    13141 tgaaccgtca ggatgctgca tcgtgctgtt agtattgccg ttggtattga tgtcgttgtt
    13201 attcacatca ttcggcgcca cattctggcg ggcgtccggg gcaacctgac cggcatttgc
    13261 cgccgagttc gcctggccat tactggactg cgcgttagat tcagcagcta acgctgcgcc
    13321 gctggcaagg ccgagggtag cggtgagtaa aagcgtagtc agttttgtca ttttcataag
    13381 atgctcctgt tatggtggat atgtcggata acctcttcca acagtgcacg tgtcagtcaa
    13441 atcctcaaat aagggataaa aagcgttcgc cgccgcgggt taacgcagca gagaatcttg
    13501 caataattca taaacagagt ggttacagtt aaaaagtgta ggttagatcc cattttccgc
    13561 tacatttgtg cgtttttttc ctgaattcca ggattattcc gttcaaagtg taaaagcccg
    13621 tttacactat ttaattgaag agatagattg gagggattgc attcattggg ataagtacgg
    13681 caacattgga ataaacatga attatcagaa tgacgattta cgcattaaag aaatcaacga
    13741 gttattacct ccggtcgcgc tgctggaaaa gtttcccgcc acggaaaatg cagcaaatac
    13801 cgttgctcac gcacgcaaag ccatccataa aattctcaaa ggcaatgacg atcgtctgct
    13861 ggtggtgatc ggtccttgtt caattcatga tccggcagcg gcgaaagagt atgccgcccg
    13921 tttgctggcg ctacgcgatg agcttcaagg cgagcttgaa attgtcatgc gcgtctattt
    13981 tgagaaaccg cgtactaccg tcggctggaa agggctgatt aacgatccgc acatggataa
    14041 cagcttccag attaacgacg gtctgcgtat tgcgcgcaaa ctgctgctgg atattaacga
    14101 cagcggcctg cctgccgccg gcgaattcct cgatatgatc acgccgcaat atctggccga
    14161 tctgatgagc tggggcgcca ttggcgcacg gactactgaa tcccaggttc atcgcgaact
    14221 ggcgtctggc ctctcttgtc cggtcggttt taaaaatggt actgatggca cgattaaagt
    14281 cgccattgac gccatcaacg ccgccggcgc gccgcattgc ttcctctccg tcactaaatg
    14341 gggtcattcg gcgattgtga ataccagcgg caacggcgac tgccatatca ttctgcgcgg
    14401 cggtaaagcg ccaaactata gcgcgcaaca tgttgctgag gtgaaagaag gcctcatcaa
    14461 agcgggactg acgccgcagg tcatgatcga tttcagccat gccaactcct gtaagcaatt
    14521 tcaaaagcag atggaggttt gcgccgatgt ctgtcagcag atagcgggcg gtgaaaaagc
    14581 gattattggc gtgatggtag agagtcatct ggtagaagga aaccagagtc tggaaagcgg
    14641 tcagccgctg acctacggta aaagcattac tgacgcctgt attggctggg aagataccga
    14701 tgcgctgctt cgtcagttgt cggcagcggt aaaagcccgt cgaggttaat cttcattacg
    14761 tcttaaaccg gcccgcaagg cc
//
LOCUS       DAJVSD010000097        14743 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.097, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000097 DAJVSD010000000
VERSION     DAJVSD010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 14743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14743
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.097"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..1583
                     /gene="ftsK"
                     /locus_tag="OQP62_002392"
     CDS             <1..1583
                     /gene="ftsK"
                     /locus_tag="OQP62_002392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HCS1721926.1"
                     /translation="PQYQQPQQPTAPQDSLIHPLLMRNGDSRPLQRPTTPLPSLDLLT
                     PPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAAR
                     ISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRENPSP
                     LTVVLGKDIAGDPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIM
                     IDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWSVNEMERRYKLMSALGVRNLAGYN
                     EKIAEAARMGRPIPDPYWKPGDSMDVQHPVLEKLPYIVVLVDEFADLMMTVGKKVEEL
                     IARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQGGA
                     ESLLGMGDMLYSGPNSTMPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESE
                     GGGGGFDGGEELDALFDQAVNFVTQKRKASISGVQRQFRIGYNRAARIIEQMEAQGIV
                     SAQGHNGNREVLAPPPFE"
     gene            1728..2339
                     /gene="lolA"
                     /locus_tag="OQP62_002393"
     CDS             1728..2339
                     /gene="lolA"
                     /locus_tag="OQP62_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010354356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HCS1721927.1"
                     /translation="MKKMAIACALLSSVVASSVWADAASSLKSRLDKVSSFHATFTQK
                     VTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWL
                     KDATGNTPFMLIARNQASDWQQYNIKQDGDNFVLTPKASNGNLKQFTINVGRDGTIHQ
                     FSAVEQDDQRSAYQLKSQQNGAVEPSKFTFTPPQGVTIDDQRK"
     gene            2349..3692
                     /gene="rarA"
                     /locus_tag="OQP62_002394"
                     /gene_synonym="mgsA"
     CDS             2349..3692
                     /gene="rarA"
                     /locus_tag="OQP62_002394"
                     /gene_synonym="mgsA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein
                     RarA"
                     /protein_id="HCS1721928.1"
                     /translation="MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRA
                     IEAGHLHSMILWGPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNR
                     NAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
                     LLKSLTTDDIEQVLDQAMQDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMM
                     ADMAEADDSGKRVLLPALLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALY
                     WYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIA
                     QAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYA
                     HDEPNAYAAGEVYFPPEIAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNSPTKRYR"
     gene            3951..5243
                     /gene="serS"
                     /locus_tag="OQP62_002395"
     CDS             3951..5243
                     /gene="serS"
                     /locus_tag="OQP62_002395"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000887397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HCS1721929.1"
                     /translation="MLDPNLLRNEPDAVAEKLARRGFKLDVDKLRALEERRKVLQVNT
                     ENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDTLLAEIRDIALT
                     IPNLPADEVPVGKDENDNVEVSRWGTPREFDFEIRDHVTLGEMHSGLDFAAAVKLTGS
                     RFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNHDTLYGTGQLPKFAGDLF
                     HTRPLEEEADSSNYALIPTAEVPLTNLVRDEIIDEDQLPIKMTAHTPCFRSEAGSYGR
                     DTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMG
                     FGACKTYDLEVWVPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSG
                     LAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG"
     gene            5480..7924
                     /gene="dmsA"
                     /locus_tag="OQP62_002396"
     CDS             5480..7924
                     /gene="dmsA"
                     /locus_tag="OQP62_002396"
                     /EC_number="1.8.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit A"
                     /protein_id="HCS1721930.1"
                     /translation="MKTKIPDAVLAAEVSRRGLVKTTAIGGLAMASSAFTLPFTRIAN
                     AAEAISPTKTDEKVVWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGNDDYDGLHQVR
                     ACLRGRSMRRRVYNPDRLKYPMKRVGARGEGKFERISWDEAYDIIATNMQRLIKEYGN
                     ESIYLNYGTGTLGGTLTRSWPPGKTLVARLMNCCGGYLNHYGDYSSAQIAAGLNYTYG
                     GWADGNSPSDIENSKLVVLFGNNPGETRMSGGGGTYYLEQARQKSNARMIIIDPRYTD
                     TGAGREDEWIPIRPGTDAALVNGLAYVLITENMVDQPFLDKYCVGYDEKTLPASAPKN
                     GHYKAYILGLGKDGIAKTPEWAAQITGIPADRIIKLAREIGSAKPAYICQGWGPQRHA
                     NGEIATRAISMLAILTGNVGINGGNSGAREGSYALPFERMPTLENPVETSISMFMWTD
                     AIERGPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDSKCEM
                     IVVIDCHMTSSAKYADILLPDCTASEQMDFALDASCGNMSYVIFTDQAIKPRFECKTI
                     YEMTSELAKRLGVEQQFTEGRTQEEWMRHLYEQSRKSIPNLPTFEEFRKQGIFKQRDP
                     EGHHVAYKDFREDPQANPLTTPSGKIEIYSQALADIAATWELPEGDVIDPLPIYTLGF
                     ENYNDPLTDKFPLQLTGFHYKARVHSTYGNVDVLKAACRQEMWINPMDAQKRGINNGD
                     KVRIFNDRGEVHIEAKVTPRMMPGVVALGEGAWYDPDAKRVDQGGCINVLTSQRPSPL
                     AKGNPSHTNLVQVEKA"
     gene            7935..8552
                     /gene="dmsB"
                     /locus_tag="OQP62_002397"
     CDS             7935..8552
                     /gene="dmsB"
                     /locus_tag="OQP62_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
                     /protein_id="HCS1721931.1"
                     /translation="MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPDVSFRRIYEYAG
                     GDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGC
                     RYCHMACPYGAPQYNAAKGHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDELRK
                     KHGELAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPKEV"
     gene            8554..9417
                     /locus_tag="OQP62_002398"
     CDS             8554..9417
                     /locus_tag="OQP62_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit"
                     /protein_id="HCS1721932.1"
                     /translation="MGSGWHEWPLMIFTVFGQCVAGGFIVLALALMKGDLRAETQQRV
                     IACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSVFFAVGGIGW
                     LLAVLKKLPPALRTLWLIITMVLGVVFVWMMVRVYNSIDTVPTWYSVWTPLGFFLTLF
                     MGGPLLGYLLLRIAGVNGWAMRLLPAVSVLALVVIAIMVAMQGAELATIHSSIQQASA
                     LVPDYGSLMAWRMVLLAAALCCWIVPQLKGYQPAVPLLSVAFILMLAGELIGRGVFYG
                     LHMTVGMAVAS"
     gene            9767..10915
                     /locus_tag="OQP62_002399"
     CDS             9767..10915
                     /locus_tag="OQP62_002399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1721933.1"
                     /translation="MSIYTRPVMLLLCGLLLLTLAIAVLNTLVPLWLAQANLPTWQVG
                     MVSSSYFTGNLVGTLFTGYLIKRIGFNRSYYLASLIFAAGCVGLGVMVGFWSWMSWRF
                     IAGIGCAMIWVVVESALMCSGTSHNRGRLLAAYMMVYYMGTFLGQLLVSKVSGELLHV
                     LPWVTGMILAGILPLLFTRIVNQQTQARHSSSISAMLKLRQARLGVNGCIISGIVLGS
                     LYGLMPLYLKHQGMANASIGFWMAVLVSAGILGQWPMGRLADKFGRLLVLRVQVFVVI
                     LGSIAMLTQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGS
                     LLGPSFAAMLMQNYSDNLLFIMIASVSFIYLLMLLRNVGQTPNPVAHI"
     gene            11133..12554
                     /locus_tag="OQP62_002400"
     CDS             11133..12554
                     /locus_tag="OQP62_002400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1721934.1"
                     /translation="MPNVQEKQLRWYNIALMSFITVWGFGNVVNNYANQGLVVVFSWV
                     FIFALYFIPYALIVGQLGSTFKEGKGGVSTWIKHTMGPGLAYLAAWTYWVVHIPYLAQ
                     KPQAILIALGWALKGDGSLIKEYTVVALQGLTLALFVFFMWVASRGMKSLKVVGSVAG
                     IAMFIMSILYVVMAVTAPAITNVEIATANITWQSFIPHIDFTYITTISMLVFAVGGAE
                     KISPYVNQTRNPGKEFPKGMLFLAVMVAVCAILGSLAMGMMFDSRHIPDDLMTNGQYY
                     AFQKLGEYYHMGNSLMVIYAIANTLGQIAALVFSIDAPLKVLLGDADSKYIPQRLCRT
                     NASGTPVNGYLLTLVLVAILIMLPTLGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFI
                     AVIRLAQKYKPEYVFIRNRALALTVGIWCFAFTAFACLTGIFPKMEAFTPEWAFQLTL
                     NIVTPFVLVGLGLIFPLLARRNT"
     gene            complement(12846..13622)
                     /gene="pflA"
                     /locus_tag="OQP62_002401"
     CDS             complement(12846..13622)
                     /gene="pflA"
                     /locus_tag="OQP62_002401"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase 1-activating protein"
                     /protein_id="HCS1721935.1"
                     /translation="MTNESVAVTADKKPVIGRIHSFESCGTVDGPGIRFITFFQGCLM
                     RCLYCHNRDTWDTHGGKEITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRD
                     WFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDLKQMNDEIHQNLVGVSNH
                     RTLEFAQYLSKKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELG
                     KHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVMY"
     gene            14216..14743
                     /locus_tag="OQP62_002402"
                     /pseudo
     CDS             14216..14743
                     /locus_tag="OQP62_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459947.1"
                     /note="involved in bacterial survival in the host cell;
                     involved in macrophage replication and filament formation;
                     frameshifted; incomplete; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pathogenicity island 1 protein SopD2"
BASE COUNT         3467 a         3552 c         4017 g         3707 t
ORIGIN      
        1 agccgcagta ccagcagccg cagcaaccga cagcgccgca agacagtctg atccacccgc
       61 tgttgatgcg taacggcgac agtcgtccat tgcagcgtcc gacgacgccg ctgccttcat
      121 tagatcttct gacgccgccg ccgagcgaag ttgaaccggt agataccttt gcgctggaac
      181 aaatggcgcg tctggttgaa gcgcgtctgg cggatttccg cattaaagct gatgtggtga
      241 actattcgcc aggcccggtc attactcgct ttgaactgaa tctggccccg ggcgttaaag
      301 cagcgcgtat ctccaacctt tcccgggatc tggcgcgctc cttgtcaacg gtagccgtac
      361 gcgttgtgga agtcattcca ggcaaacctt acgtagggtt ggaattgccg aacaagaaac
      421 ggcaaaccgt ttatctgcgc gaagtgttgg ataacgccaa attccgcgag aatccgtcgc
      481 cgcttaccgt ggtgttaggt aaggatatcg cgggcgatcc ggtagtggcg gatctggcga
      541 aaatgcctca cctgctggtg gccggtacga ccggttccgg taagtcggtc ggggttaacg
      601 ccatgatcct cagtatgctg tataaagcgc agccggaaga cgttcgcttt atcatgatcg
      661 acccgaaaat gttagaactc tcggtctatg aaggtatacc gcatctgctg acggaagttg
      721 ttaccgatat gaaagacgca gctaacgcgt tacgctggag cgtcaatgag atggagcgtc
      781 gctataagct gatgtccgcg ctcggcgtgc gtaatctggc tggttataac gagaaaatcg
      841 ccgaagcggc ccgcatggga cgtccgattc cggacccgta ctggaagccg ggcgacagta
      901 tggatgttca gcatccggtt ctggaaaaac tgccgtatat cgtggtactg gttgatgaat
      961 ttgccgacct gatgatgacc gtcggtaaaa aagttgaaga gctgatcgcg cgtttggcgc
     1021 agaaagcgcg cgctgcgggg attcacctgg tactggcgac gcagcgtccg tcggtcgatg
     1081 tgattactgg tttaattaaa gccaacattc caacccgtat cgcttttaca gtatccagca
     1141 agatcgactc ccgcaccatt cttgatcagg gtggcgctga gtcgttattg ggaatggggg
     1201 acatgctcta ttccggacca aactccacca tgccggtacg tgtccatggg gcgtttgtgc
     1261 gtgaccagga agtccatgcg gtggtgcagg actggaaagc gcgcggtcgt ccgcaatatg
     1321 tggatggcat tacctccgac agcgaaagcg aaggtggcgg tggcggtttt gacggcggcg
     1381 aagaattaga tgcgctattc gatcaggccg ttaatttcgt cactcagaag cgaaaagcgt
     1441 ccatttccgg cgttcagcgt cagttccgta tcggctataa ccgtgcggcg cgtattatcg
     1501 aacagatgga agcgcagggt attgtcagcg ctcaggggca taacggtaat cgcgaagtgt
     1561 tggctccgcc gccttttgag taaacctgta aaccggatgg cgctgttcag aggctgccat
     1621 ccggcaacaa aattcagtat tttcttcttt cctcatgctg atttttggcc tggaatagaa
     1681 agcaaaagga gctcctggtc gggagtgtcg aaacttgagg aataatgatg aaaaaaatgg
     1741 caatcgcctg tgcattactt tcaagcgttg tagccagcag cgtatgggct gacgccgcca
     1801 gctctctgaa aagccgtctg gataaagtga gcagctttca tgccaccttt actcaaaaag
     1861 tcaccgatgg cagcggtgcc gcggtgcagg agggacaggg tgatttatgg gttaagcggc
     1921 caaatctatt caactggcat atgacgcaac ctgacgagag tattctggtt tctgacggca
     1981 aaacgttatg gttctataac ccgtttgtag aacaggctac cgccacgtgg ttgaaagatg
     2041 ccaccggaaa tacaccgttt atgctgattg cccgcaacca ggccagcgac tggcagcagt
     2101 ataatattaa gcaggatggc gataattttg tgctgacgcc gaaagccagc aacggcaatc
     2161 tgaaacagtt caccatcaat gtgggacgcg acgggactat ccaccagttt agcgccgtag
     2221 aacaagacga tcagcgtagc gcctatcagc taaaatccca gcaaaacggc gctgttgaac
     2281 cgtcaaaatt tacgtttact ccgccgcaag gggtaacgat agacgaccaa cgtaagtaga
     2341 ggcgatgagt gagcaatctg tcgctcgatt tttctgataa tacgtttcaa ccgctggccg
     2401 cgcgaatgcg gccggaaaat ttagcacagt atatcggcca gcagcatttg ctggccgcag
     2461 gtaagccgtt gcctcgcgct attgaggccg ggcatctgca ctccatgatt ttatgggggc
     2521 cgccagggac ggggaaaacc acgctcgctg aagtgatcgc ccgctacgcc agcgccgatg
     2581 tcgagcgtat ttccgccgtc acttctgggg taaaagagat tcgcgaagct atcgagcgcg
     2641 cccgccagaa tcgtaatgcc ggtcgccgta ccatcctgtt tgtcgatgaa gtgcatcgct
     2701 ttaacaaaag ccagcaggac gcctttttac cgcatatcga agatggcact atcaccttta
     2761 tcggcgcgac cacggaaaat ccctcttttg agctgaactc ggcgctattg tcgcgagcgc
     2821 gagtctatct gctgaaatcg ttgactactg acgatattga gcaagtactg gaccaggcga
     2881 tgcaggacaa aacgcgtggt tacggcgatc aggatatcgt gttaccggat gagacacggc
     2941 gagcgattgc tgagctggtc aatggcgacg cgcggcgcgc cttaaatacg ctggaaatga
     3001 tggctgatat ggcggaggcg gatgacagcg gcaaacgcgt tttattgccc gccttgttga
     3061 ccgagatcgc cggcgagcgc agcgcgcgtt ttgataacaa aggcgatcgc ttctacgatc
     3121 ttatttccgc cttacataaa tcagtgcgcg gcagcgcgcc ggatgccgcc ctctattggt
     3181 atgcccgtat cattaccgcg ggaggcgatc cgctgtacgt ggcgcgtcgc tgcctggcga
     3241 ttgcctcgga agatgtgggt aatgccgatc ctcgcgcgat gcaggtcgcc attgccgcgt
     3301 gggattgttt cacccgcgtc ggcccggctg aaggcgaaag ggcgatcgcg caggctatcg
     3361 tttatctcgc ctgcgcgccg aagagcaacg ccgtctatac cgcctttaag gctgcgctgg
     3421 ccgacgcgcg cgaacgtcct gattatgacg ttcctgtcca tctgcgtaat gcgccaacca
     3481 aactgatgaa agagatgggc tatggccagg aataccgcta tgcccacgat gagcccaatg
     3541 cctatgctgc gggtgaagtg tacttcccgc cggaaatcgc gcaaacgcgc tattatcatc
     3601 cgacaaatcg tggtctggaa ggtaagattg gcgaaaagct cgcctggctg gctgaacagg
     3661 atcaaaatag ccccacaaaa cgctaccgct agtgtaaacg ttgcggtaag gttatctcta
     3721 aatatgatgc tccaggtatc atggcgttga tgatgaacct cgttatgcct gatagcacgt
     3781 tgcttatgag gtccgcgggt atagcgcaat ggatgcgttg ttgctgtcgt cggtcaggta
     3841 aggcgaaaac gtcgctatta cgtaaacggg gtttacgttc atcaatacaa tcagaggcga
     3901 tcatcaattg atcgcgtttc cttttattat tcgataagca caggataagc atgctcgatc
     3961 ccaatctgct gcgtaatgag ccagacgcag tcgctgaaaa actggcacgc cggggcttta
     4021 agctggatgt agataagctg cgcgctcttg aagagcgtcg taaagttttg caggtcaaca
     4081 cggaaaacct gcaggcggag cgtaattctc gatcgaaatc catcggccag gcgaaagcgc
     4141 gcggggaaga tatcgagcct ttacgcctgg aagtgaataa actgggcgaa gagttggatg
     4201 cggcgaaagc cgagctggat accttgctgg cggagatccg cgatatcgcg ctgaccatcc
     4261 caaacctgcc tgcggatgaa gtgccggtag gtaaagatga aaacgacaac gttgaagtca
     4321 gccgctgggg taccccgcgt gagtttgatt ttgaaatccg cgatcacgtc accttagggg
     4381 aaatgcactc cggcctcgac tttgccgctg cggttaagct gaccggctcc cgctttgtgg
     4441 tgatgaaagg acagattgcg cgtatgcatc gcgcattgtc gcagttcatg ttggatctgc
     4501 atacggaaca gcacggctat agcgaaaact acgtgccgta tctggttaac cacgacacgc
     4561 tgtatggcac cggtcaactg ccgaaattcg caggcgactt gttccatacc cgtccgctgg
     4621 aagaagaagc agacagcagt aactatgctt tgatcccgac ggcggaggtt ccgctgacca
     4681 atctggtacg cgatgaaatc atcgacgaag atcagctgcc gattaaaatg acggcgcata
     4741 cgccttgttt ccgttctgaa gcaggttctt atggtcgtga tacccgcggc ctgattcgta
     4801 tgcatcagtt tgacaaagtt gagatggtgc agatcgttcg cccggaagat tctatggctg
     4861 cgttggaaga gatgaccggc cacgcggaaa aagtgctcca gctactggga ctgccgtacc
     4921 gtaaaatcat tctgtgcact ggcgatatgg gcttcggcgc ctgcaaaact tatgacctcg
     4981 aagtctgggt tccggcgcag aatacctacc gcgagatctc ttcctgctct aacgtctggg
     5041 acttccaggc gcgtcgtatg caggcacgct gtcgcagcaa gtccgacaaa aagacccgtc
     5101 tggtccatac cctgaatggt tctggtctgg cggtaggtcg taccctggtg gctgtgatgg
     5161 aaaactatca gcaggctgat ggtcgtattg aagtgccgga agtattacgt ccgtacatga
     5221 acggactgga atatatcggc taatcctcgc tttctcctct tctaaaaagc gcctgcgggc
     5281 gcttttttta tgccagtttg ataccggaca ataatcccta ccctattagg ggtaatactg
     5341 atttcgaatg aaggtcagtt tttaacgcta tttttctact ttttcgatat atatcagact
     5401 ttatagcgac gttatcgcta tataaaattc tatacatcgt tttattgctt ttttattgtg
     5461 agcagcagag tgagccctta tgaaaactaa gatccctgat gccgtgctgg cagccgaggt
     5521 gagccgtcgt ggtttagtca aaaccaccgc gataggcggc ctggcgatgg ccagtagcgc
     5581 atttaccctg ccatttaccc gcatcgctaa cgccgcagag gcgataagcc cgacgaaaac
     5641 cgacgagaaa gtcgtctgga gcgcctgtac ggtaaactgt ggcagccgtt gtccgctacg
     5701 tatgcatgtt gtggatggcg aaatcaaata tgtagaaacg gataataccg gaaacgatga
     5761 ttacgatggc ctgcaccagg ttcgcgcctg cctgcgcggt cgttctatgc gtcgtcgcgt
     5821 ctataacccg gatcgtctca agtatccgat gaagcgcgtc ggcgcgcgcg gcgaaggtaa
     5881 atttgagcgt attagctggg acgaagccta cgatatcatt gccaccaata tgcagcgtct
     5941 tatcaaagag tatggcaacg agtccattta tctgaactat ggcacgggaa cgctgggcgg
     6001 cactttgaca cgttcatggc cgccgggaaa aacgctggtc gctcgtctga tgaactgctg
     6061 cggcggttat cttaatcact acggtgatta ctcttccgcg caaatcgcag cgggtctgaa
     6121 ttacacctat ggcggctggg cggatggcaa tagtccatcc gacattgaaa acagtaagct
     6181 ggtggtgttg tttggtaata accctggcga aacccgcatg agcgggggcg gtggaacgta
     6241 ttatcttgaa caggcgcggc agaaatcaaa cgcgcggatg atcattatcg atcctcgtta
     6301 caccgacacc ggcgccggtc gcgaagatga gtggattccg attcgtccag gtaccgatgc
     6361 ggcgctggtc aatggtctgg catatgtctt aatcaccgag aacatggtcg atcagccgtt
     6421 cctggataaa tattgcgtcg gttatgacga aaaaaccttg cctgccagcg cgccgaaaaa
     6481 cggtcactac aaagcctata ttctgggctt gggtaaagac ggtatcgcaa agacgccgga
     6541 gtgggcggcg caaattaccg gtattccggc agatcgcatt attaaactgg cgcgagaaat
     6601 cggcagcgct aaacccgcct atatttgcca ggggtggggg ccacaacgtc atgctaatgg
     6661 agaaatcgcc acgcgcgcca tctcgatgct ggcgatcctg acgggtaatg ttgggattaa
     6721 cggcggtaac agcggcgcgc gcgaagggtc ttatgccctg ccatttgaac gtatgcccac
     6781 gttggaaaat ccggttgaaa ccagcatctc catgtttatg tggaccgatg ccattgaacg
     6841 cggcccggaa atgacagcgc tgcgtgatgg cgtgcggggg aaagataagc tggacgtgcc
     6901 gatcaaaatg atctggaact atgctggcaa ctgtttgatt aaccagcact ctgagattaa
     6961 ccgcacccac gaaatcctgc aggatgacag taaatgtgaa atgatcgtcg ttatcgactg
     7021 tcatatgacc tcgtcggcaa aatacgccga tattctgttg cctgattgca ctgcttctga
     7081 gcagatggac tttgcgctgg atgcctcctg cgggaacatg tcttacgtta tcttcactga
     7141 ccaggcgatt aaaccgcgct tcgagtgtaa gacgatttat gagatgacca gcgaactggc
     7201 gaaacgtctt ggcgtggaac aacagtttac cgaaggccgg acgcaagaag agtggatgcg
     7261 tcatctgtac gaacagtcgc gtaaatccat tccgaatctg cccacctttg aggagttccg
     7321 taagcaaggc atcttcaaac agcgcgaccc cgaaggccac catgtcgcct ataaagactt
     7381 ccgcgaagat ccgcaagcga atccacttac aacgccatcg ggcaagattg aaatctattc
     7441 acaggcgttg gcggatatcg ccgccacctg ggagctgccg gaaggcgacg tgatcgatcc
     7501 attaccgatc tacacgctag gttttgaaaa ctataacgat ccgctaacgg ataaattccc
     7561 gctgcagttg acgggtttcc actataaagc gcgtgtgcat tccacttatg gcaacgtaga
     7621 cgtactgaaa gccgcctgtc gccaggaaat gtggattaac ccaatggatg cgcagaaacg
     7681 cggtatcaac aatggcgata aagtccgcat cttcaacgat cgcggcgaag ttcatatcga
     7741 ggctaaagtg acgccgcgca tgatgccggg cgtggtcgct ctgggagaag gcgcatggta
     7801 tgacccggat gcaaaacgcg tggatcaggg cggatgtatt aacgtactga ccagtcaacg
     7861 tccttctccg ctggcgaagg ggaacccgtc acatacgaac ctcgttcagg ttgaaaaggc
     7921 gtaaggagta accgatgaca acccagtatg gattttttat tgattccagc cgttgcaccg
     7981 gttgcaaaac ctgcgaactg gcctgcaagg actacaaaga tttgaccccg gatgtcagct
     8041 tccgccgcat ttatgagtat gcaggtggcg actggcagga ggataacggc gtctggcacc
     8101 agaacgtctt tgcctactat ctctccatct cctgtaacca ctgcgaagac ccggcctgca
     8161 ccaaagtctg cccgagcggc gcgatgcaca agcgcgatga cggttttgtg gtggtgaacg
     8221 aagaggtctg tatcggttgc cgctactgcc acatggcctg cccgtacggc gcgccgcagt
     8281 acaacgcggc caaaggtcat atgaccaagt gcgatggctg ttatgaccgg gtggcggaag
     8341 gtaagaaacc gatctgcgtc gaatcctgtc cgctgcgggc gctggatttc ggcccgatag
     8401 acgaactgcg caaaaaacac ggtgagctgg ctgccgtcgc gccgttgccg cgcgcgcatt
     8461 tcacgaagcc gaatattgtg attaaaccca acgccaacag ccgcccgacc ggggacacca
     8521 ccggttatct ggccaatccg aaggaggtat aagatgggaa gtggatggca tgaatggccg
     8581 ttgatgatct tcacggtctt tggtcagtgc gtggccggtg gttttattgt tctggctctg
     8641 gcgctgatga agggcgacct gcgcgcggaa acgcagcagc gggtgatcgc ctgtatgttt
     8701 ggtctgtggg tgctgatggg gattggcttt atcgcctcga tgctgcatct gggctcgccg
     8761 atgcgcgcgt ttaactcgct taaccgcgtg ggtgcttccg cactgagcaa tgaaattgcc
     8821 agcggctcgg tgttttttgc ggtcggcggg atcggctggc tgctggcggt actgaaaaag
     8881 ctgccgccgg cactgcgcac actctggctg attatcacga tggtactggg cgtcgtcttc
     8941 gtctggatga tggtacgcgt ctataacagc atcgatacag taccgacctg gtatagcgtc
     9001 tggacgccgc tgggcttctt cctgacgctc tttatgggtg gcccgctact gggttatctg
     9061 ctgctgcgca tcgcgggcgt gaacggttgg gcgatgcgtc tgttgcctgc ggtttcggtg
     9121 ctggcgctgg tggttattgc cattatggtg gccatgcagg gcgcggaact ggcgacgatt
     9181 cacagttcca ttcagcaggc gtctgctctg gtgccggatt atggttcgct gatggcctgg
     9241 cgtatggtgc tgcttgcggc ggcgttgtgc tgctggattg tgccacagtt aaaagggtat
     9301 caacctgcgg taccgttact ctctgtcgcc ttcattctga tgctggcggg ggaattgatt
     9361 ggccgcggcg tattctatgg gctgcatatg accgtgggca tggcggtagc cagctaacgc
     9421 gttgacgcgc attcggcctg cagaacgtgc aggccgaata cgcctttagc cgccgtcaat
     9481 ctaaggaata taaccggggc ggagaaggcg catataaatc catagagaag aaaacgaagc
     9541 taaaggaacc atgaaatttt tcgactgaac aaaacgccga ttttgcgggt tagatcaata
     9601 aaaacaaggg gatgaatttt tagcctttca atatattcac gtgcagaata agtaaatcga
     9661 atcgatagtc tcaaaacttg cggatcgccc atgcggagcc gattgacaat gtttttggcg
     9721 atggcatgat gcgcatgaaa tttgaacttc ctcacggttt ttattcatgt ccatctatac
     9781 ccgtcccgtc atgcttttgc tgtgcgggct acttttgttg accctggcca ttgcggtact
     9841 gaatacgctt gtgccgctgt ggcttgctca ggcaaacctt ccgacctggc aggtggggat
     9901 ggtcagctcg tcttatttta ccggcaatct ggtcgggacg ttatttaccg ggtatttaat
     9961 taaacgcatt gggtttaacc gtagctatta tcttgcctcg ctgatcttcg ccgcgggttg
    10021 tgtcgggttg ggggtgatgg tggggttctg gagctggatg agctggcgtt ttattgccgg
    10081 tatcggctgc gccatgattt gggtggttgt cgaaagcgcg ttgatgtgca gcggaacctc
    10141 gcataatcgc ggacgcctgc tggctgccta tatgatggtc tattacatgg ggaccttcct
    10201 tggacaatta ttggtcagta aagtatctgg tgaattgctg cacgtccttc cctgggtgac
    10261 cggaatgatt ctggcgggaa ttctgccgct actctttacc cgaattgtaa atcagcaaac
    10321 gcaggcacgt cattcctctt ctattagcgc catgctgaag ctacgccagg cgcgtcttgg
    10381 cgtgaatggt tgtattattt ccggcattgt tcttggttca ttatatggcc tgatgccgtt
    10441 atatctgaag catcagggga tggctaacgc cagcatcggt ttctggatgg cggtgctggt
    10501 gagcgccggt attttggggc aatggccaat gggacgtctg gcggacaaat ttggtcgctt
    10561 gctggtatta cgcgtacagg tattcgttgt catactcggc agtattgcca tgttaaccca
    10621 ggcggcgatg gcgccagctc tgtttattct gggggcggcg ggttttacgc tttatcccgt
    10681 tgcaatggcc tgggcctgtg aaaaagtcga acaccaccag cttgtggcaa tgaaccaggc
    10741 gctgttgtta agttatacgg tagggagcct gttggggccg tcttttgctg cgatgttaat
    10801 gcagaattat tcagataatc tgctgtttat tatgatcgcc agcgtatcgt ttatttatct
    10861 gctgatgctg ttacgtaacg tcggccagac gcctaatcct gtcgcccaca tctaactgtt
    10921 ctctgaatcg tatgcaggac gtgagtcttg catactcttt gtttatgttt tacgtaaaat
    10981 aattgacctg cataattttc ttgctttact gaaaaataaa atgtgccgaa ggttataatt
    11041 ttgcgctcct ctattttctc tcttcgtctt taccgcgcat aatcccccgc ttcatttata
    11101 gtaatagcat tgtgttcacg aaggatcgcg ttatgccgaa tgtgcaggaa aaacagttgc
    11161 gatggtacaa catcgccctg atgtcgttta ttaccgtttg gggattcggc aatgttgtca
    11221 ataactatgc taaccagggg ttagtggttg tcttctcctg ggtgtttatt tttgcgctct
    11281 attttattcc ttatgcctta atcgtggggc aactgggctc aaccttcaaa gagggaaaag
    11341 ggggcgtcag tacctggatt aagcatacga tggggccggg gttggcttac cttgcggcat
    11401 ggacttattg ggtcgtgcat attccctacc tggcgcaaaa gccgcaggcg atactcattg
    11461 cattgggatg ggctttaaaa ggcgacggct cgttgataaa agaatatacc gtcgttgcct
    11521 tgcaggggct gacgctggca ttgtttgttt tctttatgtg ggttgcttcc cgggggatga
    11581 aatcgctaaa ggttgttggg tctgtggctg ggattgccat gtttatcatg tcaattttat
    11641 atgttgtgat ggcagtgacc gcgccagcaa ttacaaacgt tgaaattgcg accgctaaca
    11701 tcacctggca gtcatttatt cctcatatcg attttaccta tatcaccacc atctctatgt
    11761 tggtctttgc ggttggtggg gcagagaaga tctcgcctta tgtcaaccag acgcggaatc
    11821 caggaaaaga atttccgaag gggatgctct ttttagccgt catggttgcg gtctgcgcta
    11881 tcctcggttc gttggcgatg ggaatgatgt ttgattcccg gcatatacct gacgatttaa
    11941 tgaccaatgg gcaatattat gcattccaga aattgggtga gtattaccat atgggtaatt
    12001 cattaatggt gatttatgcc attgccaata ctctggggca aatcgccgcg ctggtgtttt
    12061 ctattgatgc gccactgaaa gtcttactgg gtgatgcaga cagtaaatat atcccgcagc
    12121 gcttatgtcg tactaacgct tcaggtacac cagttaacgg ttatttgctg acattagtgt
    12181 tggtcgctat cttgattatg ttgccaacgc ttggcatcgg cgatatgaac aacctgtaca
    12241 aatggctgct taatctcaat tcagtcgtta tgccgctgcg ctatctgtgg gtatttgtcg
    12301 cctttattgc cgtcattcga ctggcgcaaa agtacaaacc cgaatatgtg tttattcgca
    12361 accgggcgtt ggcgttaact gtgggaatat ggtgttttgc cttcaccgcg tttgcctgcc
    12421 ttaccggtat tttccccaaa atggaggcgt tcacgccgga gtgggcattc cagctgacgt
    12481 tgaacatcgt gacacctttt gtcctggtcg ggttgggatt aattttccca ctgctggcgc
    12541 gtagaaacac ataacgacgc tcttttccac ggcgctcctg tcaggcgagc gccttttaag
    12601 gttacaggtg cctgggttcc aggcggagac cacggtatta acaggcgccg gggcagcaat
    12661 agttgtcaga ccttcaaccc agcagcagat aagcgactct gtatttaata cctggtaagc
    12721 gcaatattgt taaccaggcc tgtctgacgg cggggtcggg tattttagcg gtaagagcgt
    12781 tacccagaca gcaaaacggc taccgtcatg ggtagccgtt taaaagcgga taagatagca
    12841 ggcgattaat acatcacttt atgaccatac tgctcaagaa taccctttac acgttccatg
    12901 gtctcttttt taggcggctt cacgccatcc agtttatatt cttcgcccat tgccacccat
    12961 ttatgtttgc ccagctcatg atagggcagc agttcgattt tttcgacatt acccatatcg
    13021 cgggtaaact cacccaggcg atgcgcggaa tcatcgtcgt cagaccagcc gggaacgaca
    13081 acgtaacgga tccagacctt cacatttttc tttgataaat actgcgcgaa ttccagcgtc
    13141 cggtgattgg atacaccgac cagattctgg tggatctcat cattcatctg cttgagatcg
    13201 agcatcacca gatcggtaac gtccaacagt tcatcaatca ccgggtcata acggcgcaca
    13261 aagccgttgg tgtcgagaca ggtgtggata ccttcttttt tacaggcgcg aaaccagtcg
    13321 cgtacaaatt ctgcctgcaa aatggcctcg ccgccggatg ccgtcacgcc gccgccagaa
    13381 gcattcataa aatgccgata ggtcaccacc tctttcatta agtcttcaac ggtgatttct
    13441 ttaccgccat gcgtatccca tgtgtcgcgg ttatggcaat acaggcagcg catcaggcag
    13501 ccctggaaaa aggtaataaa gcggatgcct gggccatcaa cggtgccaca ggactcaaag
    13561 gagtgaatgc gaccaataac cggcttttta tcagcagtta ctgcaacact ttcatttgta
    13621 atacaatcgg ttaagttact catatcgctt cggctagctc taaataacat ggggtttatg
    13681 gacacattcc gggcatgttg agcaccctag taagggggtt gcatcctgta aaaaagcggt
    13741 actgcgagcg taaattttgg actacagaat gtgtggctgt tccagaatgt gctgcaatgg
    13801 agctatttta cctctattca gtataaaata tacggcaaat ctatgctgca tagcttgcac
    13861 cgccagaaat tgtggctcat tcatcagctc gtaacgcccg aaccgcaata catactgtaa
    13921 gtgtatcatc catagcgtcc tggttttgct gtttatgaac cgcctctttt ttcaaatggt
    13981 tgatgccgtt tttgtggtca gaacaaaaat aattctcaac ataattcaga tgtgtccaaa
    14041 gaacgttacg cctgtccagt gcctggcgtt gcattcaacg cgcaatcagg tgtaaatctg
    14101 atgtcatttc taaacccgga ctgattcaat ctcttaaata gagtgtggtt ttaatcaaaa
    14161 aatgagagca acggattgga ttttgctttc gcggtaaata atcaaaggag ttattatgcc
    14221 agttacgtta agttttggta atcgtcataa ctatgaagtt aatacttcac ggctaacccg
    14281 tttgatgagt cctaataaag aagaagcgct atacatgggg gtatgggata gatttaagga
    14341 ctgcttcaga acacacaaaa aaaagaggtg ctggaggtat tatatacact catccatgga
    14401 tgtgaacgtg aaaatcaagc tgaacttaat gttgatataa ccggcatgga gaagatacat
    14461 gcctttacac aattaaaaca atatgctaat ccatctcaac aagagcgctt tgttatgcgt
    14521 tttgatatga atcagacaaa agttttattt gagattgatg gccaggttat tgataaatgt
    14581 aatttgcatc gtctcctcaa cgtttcagaa aactgtattt ttagagtgat ggaagacgat
    14641 gaagtagagt tgttttttaa agtatgtatt aagtatggag aaaaaattgc tcgctatcca
    14701 gaattattag aaggctttgc taataaactt aaagatgcag tta
//
LOCUS       DAJVSD010000098        14514 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.098, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000098 DAJVSD010000000
VERSION     DAJVSD010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 14514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14514
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.098"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..167
                     /locus_tag="OQP62_002403"
     CDS             <1..167
                     /locus_tag="OQP62_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721936.1"
                     /translation="LVGSKVNAAGLGLQCHYLTARGTSTAQYLHTNSGIIGFSDCPIF
                     RKIATVVDNG"
     gene            complement(379..1170)
                     /gene="kdgR"
                     /locus_tag="OQP62_002404"
     CDS             complement(379..1170)
                     /gene="kdgR"
                     /locus_tag="OQP62_002404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator KdgR"
                     /protein_id="HCS1721937.1"
                     /translation="MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMS
                     KSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMRELSR
                     LTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEV
                     KQILDGVEYKQSTGRTITSTEALLPLLDEVRAQGYGEDNEEQEEGLRCIGVPVFDRFG
                     VVIAGLSISFPTLRFSEERLQEYVAMLHVAARKISEQMGYNDYPF"
     gene            1369..2718
                     /locus_tag="OQP62_002405"
                     /pseudo
     CDS             1369..2718
                     /locus_tag="OQP62_002405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416342.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(2766..3647)
                     /gene="htpX"
                     /locus_tag="OQP62_002406"
     CDS             complement(2766..3647)
                     /gene="htpX"
                     /locus_tag="OQP62_002406"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014229823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HCS1721938.1"
                     /translation="MMRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLLIMALLFGF
                     GGSFISLLMSKWMALKSVGGEVIEQPRNERERWLMNTVATQARQAGIAMPQVAIYHAP
                     DINAFATGARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVN
                     TFVIFISRIIAQIAAGFLGGNRDEGEGSNGNPLIYFAVATVLELVFGILASIITMWFS
                     RYREFHADAGSAKLVGREKMIAALQRLKTSYEPQEATSMMAFCINGKSKSLSELFMTH
                     PPLDKRIEALRSGEYLK"
     gene            complement(3840..5888)
                     /gene="prc"
                     /locus_tag="OQP62_002407"
     CDS             complement(3840..5888)
                     /gene="prc"
                     /locus_tag="OQP62_002407"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HCS1721939.1"
                     /translation="MNTFFRLTALAGLLALAGQSFAVEDITRADQIPVLKEETQHATV
                     SERVTSRFTRSHYRQFDLDEAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTVLGD
                     ELRTGKLDVFYDLYNLAQKRRFERYQYALKVLERPMDFTGNDTFNLDRSKAPWPKDEA
                     ELNALWDGKVKFDELSLKLTGKSDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAF
                     AREIDPHTNYLSPRNTEQFNTEMSLSLEGIGAVLQMDDDYTVINSLVAGGPAAKSKSI
                     SVGDRIVGVGQAGKPMVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIITLT
                     RERIRLEDRAVKMSVKTIGKEKVGVLDIPGFYVGLTDDVKVQLQKLEKQNVNSIVINL
                     RSNGGGALTEAVSLSGLFIPSGPIVQVRDNNGKVREDSDTDGVVYYKGPLVVLVDRFS
                     ASASEIFAAAMQDYGRALIVGEPTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTI
                     QKFYRVNGGSTQRKGVTPDIIMPTGNEETETGEKFEDNALPWDSIDAAKYVKSDDLAP
                     FGPELLKEHNARIAKDPEFQYIMKDIARFNAMKDKRNIVSLNYAQREKENNEEDALRL
                     ARINDRFKREGKPLLKKLDDLPKDYQEPDPYLDETVKIALDLAHLEKEKPAEQAATDK
                     "
     gene            complement(5908..6594)
                     /gene="proQ"
                     /locus_tag="OQP62_002408"
     CDS             complement(5908..6594)
                     /gene="proQ"
                     /locus_tag="OQP62_002408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone ProQ"
                     /protein_id="HCS1721940.1"
                     /translation="MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVE
                     RVGGEMNLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELEEQHVEHARKQ
                     LEEAKARVQAQRAEQQAKKREAAAAAGEKEDAPRRERKPRPVARRKEGAERKPRADKP
                     TTKAPRAPREEKHTPVSDISVLTVGQSLKVKAGNNAMDATVLEITKDGVRVQLNSGMS
                     LIVRAEHLVF"
     gene            complement(6692..7189)
                     /locus_tag="OQP62_002409"
     CDS             complement(6692..7189)
                     /locus_tag="OQP62_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HCS1721941.1"
                     /translation="MSKTELYAALNRDFQSLMAGETSFLATLANTSALLFERLTEVNW
                     AGFYLLEGDTLVLGPFQGRIACVRIPVGRGVCGAAVAQNKVQRIDDVHAFDGHIACDA
                     ASNAEIVLPVTVGERIIGVLDIDSTAFGRFTEEDEHGLRTLVAQLETVLATTDYKKFF
                     ASVAG"
     gene            7318..8601
                     /gene="yebS"
                     /locus_tag="OQP62_002410"
     CDS             7318..8601
                     /gene="yebS"
                     /locus_tag="OQP62_002410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity lipid transport subunit YebS"
                     /protein_id="HCS1721942.1"
                     /translation="MALNTSHVTPTKKLTIRSVSEALPRSHYQRCPECDMLFSLPEMS
                     AHQSAYCPRCQAKIRDGRDWSLTRLTAMAVTMLLLMPFAWSEPLLHIYLLGVRIDANV
                     MHGIWQMTQQGDPLTAAMVLFCVVGAPLILVFSIAYLWFGSLLGMNLRPVLLMLEKLK
                     EWVMLDIYLVGIGVASIKVQDYAFLQPGIGLLAFVSLVVLSILTMIHLNVEQLWERFY
                     PQHPAQRADERLRVCLGCHFSGYPDAKGRCPRCHIPLRLRRKQSIQKCWAALLASIVF
                     LLPANLLPISVIYINGGRQEDTILSGIMSLASSNIAVAAVVFIASILVPFTKVIVMFT
                     LLLSIHFKCQQGLRTRILLLRLVTWIGRWSMLDLFVISLTMSLINRDQILAFTMGPAA
                     FYFGAAVILTILAVEWLDSRLLWDAHESGNARFED"
     gene            8570..11203
                     /locus_tag="OQP62_002411"
     CDS             8570..11203
                     /locus_tag="OQP62_002411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416348.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HCS1721943.1"
                     /translation="MSQETPASKTEAQIKTKRRISPFWLLPLIALMIAGWLVWDSYQD
                     RGNSVTIDFMSADGIVPGRTPVRYQGVEVGTVEDVSLSKDLRKIEVRVSIKSDMEDAL
                     REETQFWLVTPKASLAGVSGLDALVGGNYIGMMPGKGKPRDHFVALDTQPKYRLSNGD
                     LMIHLNAPDLGSLNSGSLVYFRKIPVGRVYDYSINPNKQGVTIDVLIERRFTDLVKKG
                     SRFWNVSGIDADLSLSGAKVKLESLAALVNGAIAFDSPDNSKPAAQDDTFGLYKDLAH
                     SQRGVIVKLELPSGDGLKAESTPLMYQGLEVGELSKLTLNPGGKVTGEMTVDPSVVPL
                     MRENTRIELRNPKLSLSDANISSLLTGKTFELVPGDGEPRSEFVVVPGEKALLHEANA
                     LTLTLTAPESYGIEPGQPLILHGVKIGQVIERNLSSKGVSFIVAIEPQHRDLVQGDSK
                     FVVNSRVDVKVGLDGVEFLGASASEWIDGGIRILPGTSGKMKSTYPLYANLEKALENS
                     LSDLPTTTLTLTAETLPDVQAGSVVLYRKFEVGEVITVRPRANTFDIDLHIKPEYRHL
                     LTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALKGAISFDNLSGASASRRKGDKRILY
                     ASETSARAVGGQITLHAFDAGKLAEGMPIRYLGIDIGQIQTLELITARNEVQAKAVLY
                     PEYVQTFARAGTRFSVITPQISAAGVEHLDTILQPYINVEPGRGAARRDFELQEATIT
                     DSRYLDGLSIVVEAPEAGSLNIGTPVLFRGIEVGTVTGMSLGSLSDRVMITLRISKRY
                     QYLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAFATPPGTPLAPKAQAGK
                     HFLLQESEPKEWREWGTALPR"
     gene            11281..12720
                     /gene="rsmF"
                     /locus_tag="OQP62_002412"
     CDS             11281..12720
                     /gene="rsmF"
                     /locus_tag="OQP62_002412"
                     /EC_number="2.1.1.178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1407)-C(5))-methyltransferase
                     RsmF"
                     /protein_id="HCS1721944.1"
                     /translation="MAQHAVYFPDAFLTQMREAMPSTLSFDEFISACQRPLRRSIRIN
                     TLKISVADFLALIAPYGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEA
                     SSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHA
                     NISRCGIANTALTHFDGRVFGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESN
                     LDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGD
                     LFPDADRALTPEGFLHVFPQIYDCEGFFVARLRKMSSLPAMPAPGYKVGAFPFTSLKG
                     REALNVTQAANAVGLLWDENLHLWQREKEVWLFPAEIESLIGKVRFSRLGIKLAESHN
                     KGYRWQHEATIALACPTHAHAFELSVQEAEEWYRGRDIYPQTPPAADDVLVTFQHQPL
                     GLAKRIGARIKNSYPRELVRDGKLFTGNS"
     gene            12838..13074
                     /locus_tag="OQP62_002413"
     CDS             12838..13074
                     /locus_tag="OQP62_002413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707284.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1480 family protein"
                     /protein_id="HCS1721945.1"
                     /translation="MKTSVRIGAFEIDDAELHGESPGERTLTIPCKSDPDLCMQLDAW
                     DAETSVPAILNGEHSVLFRNHYDPKSDAWVMRLA"
     gene            13185..13376
                     /locus_tag="OQP62_002414"
     CDS             13185..13376
                     /locus_tag="OQP62_002414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebW family protein"
                     /protein_id="HCS1721946.1"
                     /translation="MFALVLFVCYLDGGCEDIVVDIYDTEQQCLYSMDDQRIRHGGCF
                     PVEDFIDGFWRPAQQYSDF"
     gene            complement(13395..14045)
                     /gene="pphA"
                     /locus_tag="OQP62_002415"
     CDS             complement(13395..14045)
                     /gene="pphA"
                     /locus_tag="OQP62_002415"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase"
                     /protein_id="HCS1721947.1"
                     /translation="MMRPEEIYQRIEAKNWRHVWVVGDIHGCFSMLMKRLRECQFDPQ
                     QDLLVSVGDLIDRGPDSLGCLALLRESWMTAVRGNHEQMALDARASSQSTLWLMNGGD
                     WFTRLTAEHAAQAEALFILCQRLPWILEVRCRHSTHVIAHADYPASTYQWQKKVDLHQ
                     VLWSRERLINKRGGISGADHFWFGHTPLRRRMDFANIHYIDTGAVFGGQLTLARIQ"
     gene            complement(14269..14433)
                     /locus_tag="OQP62_002416"
     CDS             complement(14269..14433)
                     /locus_tag="OQP62_002416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721948.1"
                     /translation="MPPLKKIVLRLFVGAMVATVTTPALALVCLEDHSAKECAISCAE
                     VMWFMFPICF"
BASE COUNT         3336 a         3945 c         3589 g         3644 t
ORIGIN      
        1 tcctggtggg aagtaaagtg aacgctgcgg ggctgggttt acagtgccat tacctgaccg
       61 cacgcggcac cagcacggcg caatatctcc ataccaacag cggcattatc ggcttttccg
      121 actgtcccat tttcagaaaa atcgccaccg tggtggataa tggctaagcg gcaataaata
      181 atttcacagt gaaactatca ccaataattc ccctatattg gctgttgttc ataagtactg
      241 ttaaataata ttttaataac cgttaaataa gccgacagat attatctact tttacgattt
      301 catcccaccc gatgttataa aaaaagcagc tacgaaaaat gtagctgctt ttttttaacg
      361 tcatgctaat aacgttgctt agaagggata atcgttgtaa cccatttgtt cagaaatttt
      421 acgcgcggcg acgtgtaaca tagccacata ttcctgtagg cgttcttctg aaaaacgcag
      481 cgtcgggaac gaaatgctta accctgcgat gactacgcca aaacggtcaa ataccggtac
      541 gccgatacaa cgtaaccctt cttcctgttc ttcgttatct tcaccgtagc cttgcgcacg
      601 cacttcatcc aacagcggca gcaacgcttc agtgctggta atcgtgcgtc ccgtgctttg
      661 cttatactct acgccgtcga gaatctgctt aacctcatca cggtcgcgcc aggccagaag
      721 cactttaccg atggccgtac tgtacagcgg attacgacgc ccaatacgtg agtacatccg
      781 cagattgtac atagagtcaa ttttatggat atagacaatg ctgtcttcat ccagcgcgcc
      841 aagatggata gtttcttttg tcagacgaga cagttcgcgc atctgaatgt ccgcactgcg
      901 gatgagatca acattttgca aagctcgcgc gcccagctca aacagcttta gcgtcagaga
      961 gtatttttca gactccccct cctgagccac gtagcccagc gttttcatgg tttgcaaaaa
     1021 gcgataaacg gtgcttttcg acatcatgac gcgctgcgat agctcggtaa tccctatttc
     1081 acgctcttca cccagcgcct gcagaatgcc gaaaactttc agcacagaag atacagaatc
     1141 aggctgctta tccagatctg cgtttgccat ttatcacctc attacgagcg ttttataaaa
     1201 ttcagaacga gtttttatta taatttcacg ccaggtcgcc cgcaatccat ctttgcttac
     1261 ttcgttacaa atctacgaca taacaactca gtattaatgc taacattatt attcagctca
     1321 taattcccct tattacaaaa tacttatgga aaaaacacgg gccgacggct gcccctcccg
     1381 cagagatacg gcgctatcct gacgattatt atcggtattt cgatggcggt tctggatggc
     1441 gcaatcgcta atgtcgcgct gccaaccatt gcgactgatt tacatgcctc ccctgccagc
     1501 tctatctgga ttgtcaatgc gtaccaaatc gccattgtcg tctcactact ttccctgtct
     1561 tttttaggcg acatgtttgg ttatcaccgg atctataaat gtggtttagt ggtatttctg
     1621 ctttcatcat tgttttgcgc gctttcagac tcgctgcaga tgctgacgct ggcgcgcatc
     1681 gcgcaggaat ttggcggcgc ggcgctaatg agcgtaaaca cggcgctgat tcgtcttatc
     1741 tacccccagc gtcatctggg acgaggtatg ggaattaact cttttatcgt cgccgtctct
     1801 tccgccgcgg gtccgacgat cgccgcggcg attttgtcca tctcatcata gaaatggctg
     1861 tttctgatta atgtcccgtt aggtatcatc gcgttaattc tggccatacg ctttttacca
     1921 gcaaacatcg cccatgacac taagccgcgc tttgacttac cgagcgcggt aatgaatgcg
     1981 ctcacatttg gtctgctgat taccgcattg agcggctttg cccagggaca gtcgctaacg
     2041 ttgattggcg cagagctgct cgttctggtc gtggtcgggt ttttcttcgt gcgccgccag
     2101 ctttctttgc ccgtcccttt gttacccatc gacttgttac gcattccgct tttttcactc
     2161 tcgatcggca cgtcaatttg ctcgttctgc gcgcaaatgt tagccatggt ctcgctacct
     2221 ttttatctgc aaaccgtgct gggccgtagc gaagtagaaa ccggcctgtt attgacgccc
     2281 tggccgctgg caacgatggt gatggcgccg ctggcgggat acctgataga acgtcttcat
     2341 gccggtttgc tgggggcgct gggaatggtg ataatggcag ccgggttgtt tgcgctggtc
     2401 atgttgccag gcaccccctc cgatctgaat attatctggc cgatgatcct ttgcggcgca
     2461 gggtttggcc tgttccagtc gccgaataat cacaccatta tcacttccgc gccgcgtgag
     2521 cgcagcggtg gcgccagcgg gatgctgggc acggcgcgac tgttaggcca aagtactggc
     2581 gccgcgctgg tagcgctgat gttgaaccag tttggcgata gcggtacgca tctttcgctg
     2641 ctcgcggcgg cgatcctggc gactctcgcg gcggtggtga gcggtttacg tattacgcaa
     2701 ccacgcgttc aggcgtaaaa aaagcgcgtc attcgacgcg cttttcatac ttgccagtgg
     2761 gcttattatt tcaggtactc gccgctacgc agcgcttcaa tgcgtttatc cagcggtggg
     2821 tgcgtcataa acagctcgct taacgatttc gatttaccgt taatacaaaa cgccatcatg
     2881 ctggtcgctt cttgcggctc gtagctggtt ttcaggcgct gcaacgcggc aatcattttt
     2941 tcacggccca ccagcttcgc cgatcccgca tcggcatgaa actcacggta acgggagaac
     3001 cacatggtga taatgcttgc cagaataccg aagaccagtt ccagcaccgt cgcaacggcg
     3061 aaatagatta gcggattacc gttacttcct tcgccttcat cacggttgcc gcccagaaaa
     3121 ccagcagcaa tttgcgcgat aatgcgcgaa ataaagataa cgaaggtgtt aaccaccccc
     3181 tgaatcaacg tcatcgtcac catatcgcca ttggcaatat ggctgatttc atgcgcaatg
     3241 acggcttccg cctcgtcagg gctcatattt tgcaacagac cggtgctcac agcgaccaat
     3301 gaggcgtcac ggcgtgcgcc cgtcgcaaac gcgttaatgt ccggcgcatg gtagatagca
     3361 acctgcggca tggcgatacc agcctggcgc gcttgcgttg ctacggtgtt catcaaccag
     3421 cgttctcttt cattgcgagg ctgttcaata acttcccctc ctacggattt taacgccatc
     3481 catttggaca tcagcaatga aataaaagaa ccgccaaaac caaacagcag cgccatgatc
     3541 agcaagcctt gcacgctgct cgactgtatc cctgtcaggc tcagaaccag cccgaaaacg
     3601 accatcacgg ccaggttcgt cagcaggaag agcgcgattc gcatcataat tttcttttaa
     3661 cctcaattta acaaagcgca ctatgcgatt acccacatcg tatgggtctt atggctattt
     3721 tcaagtatca ccaggcggta agtcacgaga aaaacacaac tttacatttt gtagcattat
     3781 cctgacgact tctgcgcttg ttaaaaaaaa caggcacaat tttttgtgcc tgtttagcgt
     3841 tacttatcgg ttgccgcttg ctccgctggt ttttcttttt caagatgcgc caggtccaga
     3901 gcaatcttca ccgtttcatc aaggtacggg tccggctcct ggtaatcctt tggcagatcg
     3961 tccagtttct tcaacaacgg tttaccctca cgtttaaacc gatcgttaat acgcgccaga
     4021 cgcagagcgt cttcttcatt gttctctttc tcacgctgcg cataattcag agagacgatg
     4081 ttgcgcttat ccttcatggc attgaaacgt gcgatatcct tcatgatgta ctgaaactca
     4141 ggatctttgg cgatacgcgc gttgtgctct ttcaataatt ccgggccaaa cggggccaaa
     4201 tcgtccgatt tcacgtattt cgccgcatca atgctatccc acggcaaggc gttatcttca
     4261 aatttttctc cggtttccgt ctcttcattg ccagtcggca tgatgatatc cggcgtgacc
     4321 cctttacgct gcgtactacc gccgttgaca cggtaaaact tctgaatggt gtactgcacc
     4381 gaacccagcg caggccattc cgggcggagc atctgatcgt aaattcggtt tagcgaacga
     4441 tattgctgta ccgtcccttt accgaaggtc ggctcaccga caatcagcgc gcgaccataa
     4501 tcctgcatcg cggcagcgaa gatttccgat gccgaagcac tgaaacgatc gaccagcacc
     4561 accagcgggc ctttgtagta gaccacgccg tcggtgtcgc tatcctcacg cactttaccg
     4621 ttattgtcgc gcacctgaac tatcggacca gaagggataa acaggccgga aagcgaaacg
     4681 gcttccgtca gcgccccacc gccgtttgaa cgcagattga taacgatgct gttaacattc
     4741 tgtttttcca gcttctgaag ctgaactttg acatcatcgg tcaagccaac atagaagcct
     4801 ggaatatcca gtacgccaac tttttccttg ccgatggttt tcaccgacat tttaaccgcg
     4861 cgatcttcaa gacgaatccg ttcacgcgtc agcgtgataa tacgcgtttt cgtccctttg
     4921 ccagccggca gtatttccag tcggaccttg ctgcctttcg gccctttgat cagcgccacc
     4981 acatcgtcaa gacgccagcc aatgacgtcg accatcggtt ttccggcctg ccctacgccg
     5041 acgatacgat cgccgacgct aatcgacttg ctcttcgctg ccgggccacc ggcgaccaat
     5101 gagttaatga cagtgtaatc gtcatccatt tgcagcaccg cgccgatacc ttccagagac
     5161 aggctcattt cggtattaaa ctgctcggta ttgcggggag aaagataatt cgtatgcggg
     5221 tcgatttcac gcgcaaaagc ggtcatcgcc agcgagaaca catcttcact gttggtctgc
     5281 gccaggcggc gaatagcgaa tttgtagcga cgcgtcagcg tttcgcgaat ttctttgtcg
     5341 ctcttgccgg tgagtttcag actgagctca tcgaatttca ctttaccatc ccacagcgca
     5401 tttagctcag cctcatcttt cggccagggc gctttactgc ggtccaggtt aaacgtatcg
     5461 tttccggtga aatccattgg ccgttccagc acttttagcg cgtactggta acgttcaaac
     5521 cggcgctttt gcgccaggtt ataaagatcg taaaaaacat ccagcttacc cgtgcgcagc
     5581 tcatcgccca acacggtttt ctttttcgca aactgctcga catcgctcgc caacaaaacg
     5641 ttgtggctat agtcgagaag attcagatag cgatcaaaaa tctttgccga aaatgcctca
     5701 tccagatcga actggcgata gtgggagcgg gtaaaacgcg acgttacgcg ctcgctcacc
     5761 gtcgcatgtt gcgtctcttc ctttagtacg ggaatttgat cggcacgcgt aatatcttcc
     5821 acggcgaagg actggcctgc taatgcaagc aggccagcta acgcggtaag cctaaaaaaa
     5881 gtgttcatgc caggcctggc ctccgtttca gaacaccagg tgttctgcgc gtacaatcaa
     5941 agacataccc gaattcagct gtacacggac accatctttg gtaatttcta atacggtggc
     6001 atccatcgca ttattacccg ctttcacctt gagggactgc cctacggtca atactgaaat
     6061 atcagaaacc ggcgtgtgct tctcttcgcg aggcgcacgc ggcgctttcg tcgtcggttt
     6121 atcagcgcga ggtttacgtt cagcgccttc tttacgacgc gctaccgggc gaggtttacg
     6181 ctcgcgtcgc ggcgcgtctt ctttttcgcc agccgccgcg gcagcttcgc gttttttcgc
     6241 ttgctgctct gcgcgctgcg cctgaacacg ggctttggct tcttcaagct gcttacgcgc
     6301 atgttcgaca tgctgttctt ccagctcgcc gcacggattg ccatcaaggt cgacgcgcgt
     6361 tgcgcccggc ttaacgccgt acaggtaacg ccagcttgaa gtataaagac gtaaagcgga
     6421 acgaagttgc gttttgctga ggttcatttc gcccccaact cgctctacca gatcctgaaa
     6481 aataccaatt ttcagcgggc gagcttcgcc ttccgcacta aaacagtgag gaaaacgctc
     6541 ggccagaaac gcgataactt ctttactgct attcaactta ggttgatttt ccatgaaatt
     6601 tcctgattac aacggacgta gccaacaagc agcaggcatg aacaggcgtc attataatga
     6661 cgctatcagt aattgctacg ttatccgttg attatcctgc gacgctcgca aagaattttt
     6721 tgtaatccgt cgttgcaagc acggtttcaa gctgtgcgac cagcgtacgc aggccgtgtt
     6781 catcttcttc ggtaaaacgg ccaaacgccg tgctatctat atccagcacg ccgataatcc
     6841 gttcgccaac cgtgacaggc agcacaattt cggcgttgct ggcggcatca caggcaatat
     6901 ggccgtcaaa cgcatgaaca tcatcaatac gttgaacctt attctgcgct accgctgcgc
     6961 cgcacacgcc gcgaccaacc ggaatccgca cacaggcgat tcgcccctga aacggcccca
     7021 acaccagcgt atcgccttcg aggagataaa atcccgccca gttcacctcg gtaagacgtt
     7081 cgaacagtag cgcgctggta ttcgccagcg tggccagaaa gctggtttca cctgccatta
     7141 acgactgaaa atcgcggttt aacgccgcgt atagttctgt tttgctcatt atataatcac
     7201 ttcgtggtct tactcctaaa cacaggctat taaaataagc attaaatgcg ttcttgttca
     7261 agattattcc tgtcatgagt taagattaca ttattctaac actttgattc acgatacatg
     7321 gctctgaaca cctcacacgt cacgccaaca aaaaagctaa cgatcaggtc agttagcgaa
     7381 gcgctgccgc gcagccacta ccagcgctgc cctgaatgcg acatgctgtt cagcttgccg
     7441 gagatgagcg ctcatcaaag cgcttattgt cctcgttgcc aggccaaaat tcgcgatggg
     7501 cgcgactggt cgctgacgcg gctgaccgcg atggcagtaa ccatgctgct attgatgccg
     7561 tttgcctgga gtgaaccgct actccatatc tacctgttgg gcgtacgcat tgatgccaat
     7621 gtgatgcacg gcatctggca aatgacgcag cagggcgatc cgttaaccgc cgcaatggtg
     7681 ctcttttgcg tggtgggcgc gccgcttatt ctggtttttt caattgctta cctgtggttt
     7741 ggcagccttc tcggcatgaa tctgcgtcca gtcctgctga tgctggaaaa actgaaagag
     7801 tgggtgatgc tggacatcta tctggtcggt attggcgttg cctctatcaa agtgcaggac
     7861 tatgcctttc tgcagccggg cattgggctt ttagcgttcg tctcgttggt ggttcttagc
     7921 attctgacta tgattcatct gaatgtggag caactatggg aacgatttta tccgcagcac
     7981 cctgctcaac gtgcggacga aagattgcgc gtctgtcttg gctgccactt tagcggctat
     8041 ccggatgcga aaggacgctg cccgcgttgt catattccgc tacggttacg cagaaaacag
     8101 agcatacaga agtgttgggc ggccttgctg gcgtctattg tctttttgct gccggcaaac
     8161 ctgctgccta tctcggtaat ctacattaat ggcgggcgtc aggaagatac tatcctgtcg
     8221 ggcattatgt cgcttgccag cagcaatatc gccgtcgccg ccgtcgtttt tatcgccagt
     8281 attttggtgc cgtttaccaa agtcatcgtg atgtttacgc tactgttgag tatccatttt
     8341 aaatgccaac agggactgcg gacgcgaatt ctgttgctgc gtctggtgac atggataggc
     8401 cgctggtcga tgctggatct tttcgttatc tcgttaacca tgtctctgat taatcgcgat
     8461 cagattctgg cttttactat gggaccggct gcgttttatt tcggcgcagc ggtaattttg
     8521 actattcttg cagtggaatg gctggatagc cgcttacttt gggatgcaca tgagtcagga
     8581 aacgcccgct tcgaagactg aagcgcaaat taaaaccaaa cgccgtattt cacctttctg
     8641 gctgctaccg cttatcgcgc taatgatcgc ggggtggctg gtatgggata gctaccagga
     8701 tcgcggcaat agcgtgacta tcgattttat gtcggcggac ggtatcgtac cgggccgtac
     8761 tcccgtgcgt tatcagggag tagaagtcgg caccgtggaa gatgtcagtc tgagcaaaga
     8821 tctgcgcaaa attgaagttc gcgtcagtat caaatcagat atggaagatg cgttgcgcga
     8881 agagacgcaa ttctggctgg tgacgcccaa agcctcgctg gcgggcgttt ccggcctgga
     8941 tgcgttggtc ggcgggaatt acatcggtat gatgccaggt aaaggcaagc ccagagatca
     9001 tttcgtcgcc ctagatacac agcctaaata ccggcttagc aacggcgatc tgatgattca
     9061 tctcaatgcg ccggatctcg gttcgcttaa tagcggttca ctggtctatt tccgtaaaat
     9121 ccctgtcgga cgggtgtatg actattcgat taaccctaac aaacagggcg tgacgattga
     9181 cgttctgatt gagcgacggt ttaccgatct ggtgaaaaaa ggcagccgtt tttggaatgt
     9241 ctccggcatt gacgccgatc taagcctgag cggcgcgaag gtgaaactgg agagcctcgc
     9301 ggccctggtc aatggcgcga ttgcgtttga ctcaccggac aattccaaac ccgccgccca
     9361 ggatgacacg ttcggcttat ataaagattt agcccacagc caacgagggg taatcgttaa
     9421 acttgagctg cccagcggag acggtctgaa agcggaatct acgccgctaa tgtaccaggg
     9481 actggaggtg ggtgagcttt ctaaactgac gctcaaccct ggcggcaaag tcaccggaga
     9541 gatgaccgtc gatcccagcg ttgttccgct gatgcgggaa aatacgcgta ttgagttacg
     9601 caatcccaaa ctgtcgctaa gtgacgcgaa tatcagttcg ttgttaaccg gaaaaacctt
     9661 cgagctggtg ccgggcgacg gcgaaccacg cagtgaattt gtggtggtgc cgggtgaaaa
     9721 agccctgctg catgaggcga atgccttaac cctgacgctg acggccccgg aaagttacgg
     9781 catcgaaccg ggccagccgt taattttaca tggcgtaaaa attggccagg tcattgagcg
     9841 caacttatcc agtaaaggcg tgtcattcat cgtcgcgatt gaaccgcagc accgggattt
     9901 ggtacagggc gacagtaaat tcgtggtcaa cagccgggtg gatgtcaaag tcggccttga
     9961 cggcgtagag ttcctcggcg ccagcgccag cgagtggatt gacggcggaa ttcgtatttt
    10021 acccggtacg agcgggaaga tgaaatccac ctacccgctc tatgctaacc tggaaaaagc
    10081 gctggaaaat agcctcagtg acttaccgac taccaccctg acgctgacgg ccgaaacgtt
    10141 gccggatgtc caggcaggtt ccgtcgtgct gtatcgaaaa tttgaagtag gcgaagtcat
    10201 caccgttcgc ccacgcgcca atacctttga catcgacctg catattaagc cggaatatcg
    10261 ccacctgtta accagcaata gcgtgttctg ggcggaaggc ggcgcgaagg tgcaacttaa
    10321 cggcagcggc ctaacggtac aggcctcgcc actctcccgt gcgctgaaag gggccattag
    10381 ttttgataac ctgagcggcg ccagcgccag tcggcgcaaa ggcgataaac gcattcttta
    10441 tgcttcagaa acttccgccc gcgcggtagg cggacaaatt acgctacacg cgttcgacgc
    10501 cggaaaattg gcggagggga tgcccattcg ttacctcggt attgatatcg gccagatcca
    10561 gacgctggaa ttgatcaccg cacgtaatga agtgcaggca aaagccgtac tttatccgga
    10621 gtacgtgcaa acatttgccc gcgccgggac acgtttttcc gttattacgc cacaaatctc
    10681 cgcggcgggc gtcgagcatc tggatacgat tctccagccc tatattaacg ttgagccagg
    10741 acgcggcgcg gcgcggcgcg actttgaact gcaggaagcc acgattaccg actcacgcta
    10801 tctggatggg ttaagcatcg tcgtggaggc gccagaagca ggctcgctta atattggcac
    10861 acccgtcctg tttcgcggta tcgaagtggg aaccgtcacc ggaatgtccc tggggtcgct
    10921 ctccgatcgc gtgatgatca ccttgcgcat cagtaagcgt taccaatatc tggtgcgtaa
    10981 taactccgta ttctggcttg cctccggcta tagtctcgac tttggtctga caggcggcgt
    11041 ggtgaaaacg gggacattta atcaattcat ccgtggcggt atcgccttcg ctactccacc
    11101 aggtacgccg ctggcgccaa aagcgcaagc cggtaagcat ttcctgttac aagagagcga
    11161 accgaaagag tggcgtgaat ggggtaccgc tctgccacgt taaacaccag gctccggcgt
    11221 actcgcgccg gagcgtttta tgctacactg cgcgcctgtt tttttgccgg cgatacacct
    11281 gtggctcaac acgctgtcta ttttcctgac gcttttctga cgcaaatgcg tgaagcaatg
    11341 ccttccacgc tctcttttga tgaatttatt tcggcctgcc aacgcccgtt gcgccgcagt
    11401 atacgcatca atacgcttaa aatatccgtg gctgatttcc ttgccctaat cgcgccctac
    11461 ggctggtcgc tcacgccaat tccgtggtgt catgaaggat tctggatcga gcgcgatgat
    11521 gaagaggcat tgccgcttgg cagtaccgct gagcatttaa gcggcctgtt ttacattcag
    11581 gaggccagtt cgatgctgcc ggtcgcggcc ctgttcgccg atgataatca tccgcagcgg
    11641 gtcatggata tggcagcggc gcctggctcc aaaaccacgc agatcgctgc ccgcatgggg
    11701 aaccgcggcg ccattctggc caacgaattt tcggccagcc gcgtcaaagt tctgcacgct
    11761 aatatcagcc gatgtggaat cgccaatacc gcactgacgc atttcgatgg ccgcgtattt
    11821 ggcgctgcgt taccggagat gtttgacgct atcctgctgg atgcgccctg ctctggcgaa
    11881 ggcgtagtac gtaaagatcc tgatgcgcta aaaaactggt cgccagaaag taatctggat
    11941 atcgcggcga cacagcggga actgctcgac agcgcttttc atgctttacg acccggcggc
    12001 acgctggtct actccacctg cacgttaaat cgccaggaaa acgaagcggt ctgcctctgg
    12061 ctgaaagaga cctacgccga cgccgttgaa tttttgccgc tgggtgatct gtttcctgac
    12121 gctgaccgcg ccctcacccc ggaaggcttc ctgcacgtct tcccgcaaat ttacgactgc
    12181 gaaggattct tcgtcgcacg tctgcgtaaa atgtcatccc ttccagccat gcccgcgccg
    12241 gggtataaag tgggggcgtt tccttttacc tccctcaaag gccgcgaagc attaaacgtt
    12301 acccaggcgg ccaacgccgt cggactgcta tgggatgaaa atctccatct ttggcagcgt
    12361 gaaaaagagg tctggctgtt cccggcagag attgaatcac tgatcggaaa agtccgtttt
    12421 tcccggctcg gcattaagct ggccgaaagt cataataaag gctatcgctg gcaacatgag
    12481 gcgacgatag cccttgcctg cccgactcat gctcacgcgt tcgaactttc tgtgcaagag
    12541 gcggaggagt ggtatcgcgg tcgggatatt tatccgcaaa caccccctgc cgctgatgat
    12601 gtcctggtga cgttccagca tcagccactt ggtctggcaa aacgtatcgg cgccagaata
    12661 aagaacagtt acccgcgtga actggtgcgg gatggaaaac tctttactgg taatagttaa
    12721 aaggcgcaca aaaaaaccgc actttttgac tggcgctttt gcgtacgttg actacgctga
    12781 aaaatggacg gctaaactgg tcgtaccaca attagcgtat taacggagag cacgatgatg
    12841 aaaaccagtg tgcgcattgg cgcttttgaa atcgacgatg ccgaattaca tggcgaatcg
    12901 ccgggggagc gaacgttaac aatcccctgt aaatccgatc cggatttatg tatgcaactg
    12961 gacgcctggg atgccgaaac cagcgttccc gccattctca acggggaaca ttccgttttg
    13021 ttccgtaatc attacgatcc taaatctgat gcctgggtca tgcgtcttgc ctgactcaaa
    13081 aagaacccgt cgccaggcgg gttatttatt cttccttttc tcatttcccc cctgcgctaa
    13141 cctctcctac actatcgtgt aaagtagtta acattgagga tgtaatgttc gcgctggtac
    13201 tttttgtatg ttacctggat ggaggatgcg aggatattgt cgtggacatc tacgataccg
    13261 agcagcagtg tctttattcg atggacgatc aacggattcg ccatggcggc tgttttccgg
    13321 tagaggattt tatcgacggc ttctggcgac ctgcgcagca atatagcgat ttttaaccct
    13381 agtcgctgat gccgctattg tatccgcgct aacgtcaatt gcccgccaaa taccgcgccc
    13441 gtatcaatat agtgtatgtt ggcgaaatcc atgcgccgac gcaacggcgt atggccaaac
    13501 caaaaatgat cggctccgct aatcccgccg cgcttattta tgagccgttc gcggctccag
    13561 agaacctgat gtaagtcgac ctttttttgc cattgatagg ttgacgctgg ataatctgca
    13621 tgagcgatca catgcgtgct atggcggcag cgaacttcca gtatccaggg cagccgctga
    13681 caaagaataa aaagcgcttc agcttgcgca gcgtgttcag ccgtcaggcg ggtaaaccag
    13741 tcgccaccat tcatcaacca cagcgtcgac tgcgatgagg cccgcgcatc cagcgccatt
    13801 tgttcatgat tgccgcgaac cgccgtcatc caggactcac gcagtaaagc caggcaaccc
    13861 aggctgtccg ggcctctatc aatgagatcg cccacagaaa ctaacaagtc ttgttgcgga
    13921 tcaaattgac actcacgtaa ccttttcatt aacattgaaa aacagccgtg aatatcgccg
    13981 accacccaga catgccgcca attctttgcc tctattcgct gataaatctc ttcaggccgc
    14041 atcatgtttt tcctgtcgtt cattatccaa gatagatata aaaagatagc gtgtgcagat
    14101 tttcttgctt agtaaacgtg ctctgttgta aatagcgaat ttcatcagta gcgagtaaat
    14161 gctttgttat catcgcaata aaatataact gactgcacca ggggagtgtt atcccctggc
    14221 gcagcgagct actcactatc acctgttcgc gttcaatatt ctccctcctt aaaaacatat
    14281 cggaaacata aaccacatca cctcagcaca cgatatagca cactctttag cggagtgatc
    14341 ctcaaggcaa accagcgcca atgcaggtgt cgttaccgtg gcgaccatcg cccccacaaa
    14401 caggcgcagc acaatttttt ttaaaggtgg cataacctct cctgacagtt aacagaccat
    14461 taatccttat cgagacatca tccgtgcgcg ggtatcatag acttaacaac acgc
//
LOCUS       DAJVSD010000099        14359 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.099, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000099 DAJVSD010000000
VERSION     DAJVSD010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 14359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14359
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.099"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(246..555)
                     /locus_tag="OQP62_002417"
                     /pseudo
     CDS             complement(246..555)
                     /locus_tag="OQP62_002417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463453.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(822..1538)
                     /gene="arcA"
                     /locus_tag="OQP62_002418"
     CDS             complement(822..1538)
                     /gene="arcA"
                     /locus_tag="OQP62_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003621071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator ArcA"
                     /protein_id="HCS1721949.1"
                     /translation="MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS
                     EYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYIT
                     KPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYK
                     LPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDT
                     PEIIATIHGEGYRFCGDLQD"
     gene            1634..1774
                     /locus_tag="OQP62_002419"
     CDS             1634..1774
                     /locus_tag="OQP62_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1721950.1"
                     /translation="MTKVRNCVLDALSINVNNIISLVVGTFPLDPTVSKTAVILTILT
                     AT"
     gene            2174..2860
                     /locus_tag="OQP62_002420"
     CDS             2174..2860
                     /locus_tag="OQP62_002420"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA/rRNA methyltransferase"
                     /protein_id="HCS1721951.1"
                     /translation="MRVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPAT
                     RWVAHGSGDIIDNIEVFHTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKS
                     RWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQ
                     QTPESVDIADESQLQALRARLLRLLTTLEAADDHKLTDWLQQRIGLLGQRDTAMLHRL
                     VHDIEKKLTK"
     gene            3074..3139
                     /gene="thrL"
                     /locus_tag="OQP62_002421"
     CDS             3074..3139
                     /gene="thrL"
                     /locus_tag="OQP62_002421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thr operon leader peptide"
                     /protein_id="HCS1721952.1"
                     /translation="MNRISTTTITTITITTGNGAG"
     misc_feature    3075..3195
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00506"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Thr leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00506"
     gene            3221..5683
                     /gene="thrA"
                     /locus_tag="OQP62_002422"
     CDS             3221..5683
                     /gene="thrA"
                     /locus_tag="OQP62_002422"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase I"
                     /protein_id="HCS1721953.1"
                     /translation="MRVLKFGGTSVANAERFLRVADILESNSRQGQVATVLSAPAKIT
                     NHLVAMIEKTIGGQDALPNISDAERIFSDLLAGLASAQPGFPLARLKMVVEQEFAQIK
                     HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGLLEARGHRVTVIDPVEKLLAVGHY
                     LESTVDIAESTRRIAASQIPADHMILMAGFTAGNEKGELVVLGRNGSDYSAAVLAACL
                     RADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQF
                     QIPCLIKNTGNPQAPGTLIGASSDDDNLPVKGISNLNNMAMFSVSGPGMKGMIGMAAR
                     VFAAMSRAGISVVLITQSSSEYSISFCVPQSDCARARRAMQDEFYLELKEGLLEPLAV
                     TERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATT
                     GVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQTWLKNKHIDLRVCGVANSKA
                     LLTNVHGLNLDNWQAELAQANAPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYAD
                     FLREGFHVVTPNKKANTSSMDYYHQLRFAAAQSRRKFLYDTNVGAGLPVIENLQNLLN
                     AGDELQKFSGILSGSLSFIFGKLEEGMSLSQATALAREMGYTEPDPRDDLSGMDVARK
                     LLILARETGRELELSDIVIEPVLPDEFDASGDVTAFMAHLPQLDDAFAARVAKARDEG
                     KVLRYVGNIEEDGVCRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAG
                     NDVTAAGVFADLLRTLSWKLGV"
     gene            5685..6614
                     /gene="thrB"
                     /locus_tag="OQP62_002423"
     CDS             5685..6614
                     /gene="thrB"
                     /locus_tag="OQP62_002423"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HCS1721954.1"
                     /translation="MVKVYAPASSANMSVGFDVLGAAVTPVDGTLLGDVVSVEAADHF
                     RLHNLGRFADKLPPEPRENIVYQCWERFCQALGKTIPVAMTLEKNMPIGSGLGSSACS
                     VVAALVAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENGI
                     ISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQ
                     PQLAAALMKDVIAEPYRARLLPGFSQARQAVSEIGALASGISGSGPTLFALCDKPETA
                     QRVADWLSKHYLQNQEGFVHICRLDTAGARVVG"
     gene            6618..7904
                     /gene="thrC"
                     /locus_tag="OQP62_002424"
     CDS             6618..7904
                     /gene="thrC"
                     /locus_tag="OQP62_002424"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HCS1721955.1"
                     /translation="MKLYNLKDHNEQVSFAQAVTQGLGKQQGLFFPHDLPEFSLTEID
                     EMLNQDFVSRSAKILSAFIGDEIPQQILEERVRAAFAFPAPVAQVESDVGCLELFHGP
                     TLAFKDFGGRFMAQMLTHISGDKPVTILTATSGDTGAAVAHAFYGLENVRVVILYPRG
                     KISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKTALGLNSANSINISR
                     LLAQICYYFEAVAQLPQGARNQLVISVPSGNFGDLTAGLLAKSLGLPVKRFIAATNIN
                     DTVPRFLHDGKWAPKATQATLSNAMDVSQPNNWPRVEELFRRKIWRLTELGYAAVDDT
                     TTQQTMRELKAKGYISEPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVESILGE
                     TLALPEALAERADLPLLSHHLPADFAALRKLMMTRQ"
     gene            complement(7998..8771)
                     /gene="yaaA"
                     /locus_tag="OQP62_002425"
     CDS             complement(7998..8771)
                     /gene="yaaA"
                     /locus_tag="OQP62_002425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HCS1721956.1"
                     /translation="MLILISPAKTLDYQSPLATTRYTQPELLDHSQQLIQQARQLSAP
                     QISRLMGISDKLADLNATRFHDWQPHFTPDNARQAILAFKGDVYTGLQAETFNDADFD
                     FAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENPRGKDLYQFWGDIITDKLNEALE
                     AQGDRVVVNLASEEYFKSVKPKKLDAELIKPVFLDEKNGKFKVVSFYAKKARGLMSRF
                     IIENRLTKPEQLTAFDREGYFFDEETSTQDELVFKRYEQ"
     gene            complement(8850..10280)
                     /locus_tag="OQP62_002426"
     CDS             complement(8850..10280)
                     /locus_tag="OQP62_002426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HCS1721957.1"
                     /translation="MPEFFSFINEILWGSVMIYLLLGAGCWFTWRTGFIQFRYIRQFS
                     RSLKGSLSPQPGGLTSFQALCTSLAARIGSGNLAGVALAIAAGGPGAVFWMWVSAIIG
                     MATSFAECSLAQLYKERDPTGQFRGGPAWYMARGLGMRWMGVVFALFLLVAYGLIFNS
                     VQANAVSRALHFAFNIPPLISGIALAFCALLIIIRGIKGVARLMQWLIPLIALLWVAG
                     SVFICLWHIEQMPGVIASIVKSAFGWQEAAAGAAGYTLTQAITSGFQRGMFSNEAGMG
                     STPNAAAAATSYPPHPVAQGIVQMIGVFSDTIIICTASAMIILLAGNHASHSSTEGIQ
                     LLQHAMVSLTGEWGASFVALIVILFAFSSIVANYIYAENNLFFLRLHNAKAIWLLRLA
                     TLGMVIAGTLISFPLIWQLADMIMACMAITNLTAILLLSPVVYTLAGDYLRQRKLGVR
                     PQFDPRRFPDIEPQLAPDTWDAASRD"
     gene            10549..11502
                     /gene="tal"
                     /locus_tag="OQP62_002427"
     CDS             10549..11502
                     /gene="tal"
                     /locus_tag="OQP62_002427"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HCS1721958.1"
                     /translation="MTDKLTSLRQFTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQ
                     IPEYRKLIDDAVAWAKQQSSDRAQQVVDATDKLAVNIGLEILKLVPGRISTEVDARLS
                     YDTEASIAKAKRIIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFS
                     FAQARACAEAGVYLISPFVGRILDWYKANTDKKDYAPAEDPGVVSVTEIYEYYKQHGY
                     ETVVMGASFRNVGEILELAGCDRLTIAPALLKELAESEGAIERKLSFSGEVKARPERI
                     TEAEFLWQHHQDPMAVDKLADGIRKFAVDQEKLEKMIGDLL"
     gene            11613..12203
                     /gene="mog"
                     /locus_tag="OQP62_002428"
     CDS             11613..12203
                     /gene="mog"
                     /locus_tag="OQP62_002428"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000380375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HCS1721959.1"
                     /translation="MNTLRIGLVSISDRASSGVYQDKGIPALEEWLASALTTPFELQT
                     RLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAIADREMPGFGEQ
                     MRQISLRFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKADDGSVSVPGIFA
                     SVPYCIQLLDGPYVETAPEVVAAFRPKSARRENMSS"
     gene            complement(12260..12826)
                     /gene="satP"
                     /locus_tag="OQP62_002429"
     CDS             complement(12260..12826)
                     /gene="satP"
                     /locus_tag="OQP62_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HCS1721960.1"
                     /translation="MGNTKLANPAPLGLMGFGMTTILLNLHNAGFFALDGIILAMGIF
                     YGGIAQIFAGLLEYKKGNTFGLTAFTSYGSFWLTLVAILLMPKMGLTDAPDAQLLGAY
                     LGLWGVFTLFMFFGTLKAARALQFVFLSLTVLFALLAVGNITGNEATIHIAGWVGLVC
                     GASAIYLAMGEVLNEQFGRTILPIGEAH"
     gene            complement(12976..13689)
                     /gene="msyB"
                     /locus_tag="OQP62_002430"
     CDS             complement(12976..13689)
                     /gene="msyB"
                     /locus_tag="OQP62_002430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acidic protein MsyB"
                     /protein_id="HCS1721961.1"
                     /translation="MNVTYLHDEDLDFLQHCSEEQLADFARLLTHNEKGKARLSSVLS
                     HNELFKAMEGHPEQHRRNWQLIAGEFQHYGGDSIANKLRGHGKQYRAILLDVAKRLKL
                     KADKSMSTFEIEQQLLEHFLRHTWQKMDAAHKQEFLQAVDAKVSELEELLPLLMKDRS
                     LAKGVSHLLSTQLTRILRTHAAMSILGHGLLRGAGLGGPVGAALNGVKAMSGSAYRVT
                     IPAVLQIACLRRMMAAVQA"
     gene            complement(13725..14129)
                     /locus_tag="OQP62_002431"
     CDS             complement(13725..14129)
                     /locus_tag="OQP62_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2541 family protein"
                     /protein_id="HCS1721962.1"
                     /translation="MRSVLTISVGLLFGLALSSVAHANDHKILGVIAMPRNETNDLAL
                     KIPVCRIVKRIQLTADHGDIELSGASVYFKTARSASQSLNVPSSIKEGQTTGWININS
                     DNDNKRCVSKITFSGHTVNSSDMARLKVIGDD"
BASE COUNT         3469 a         3653 c         3888 g         3349 t
ORIGIN      
        1 catgagcgac aacgctgttt ttaaggttaa ccatagtaaa tgtgatgatt ttatttgcaa
       61 tcattttatg acagctatca taggtaccgt gcttaacgag cgcgtagagc gtacaggata
      121 gcgaagcgat gaacatcgct gttggaggat acgaatgaga gaaaagtaca aaatgcaagc
      181 gggcggcgtt ttactgagcg aaatcgccgc ctgccggaac tcctcccgtc gggagccata
      241 agcggttagc ggtactggac gatcaggctt tgaatctccg gatgatcttt taacgacacg
      301 tgccgtaccg tggcgattcc attcatcaac gaaatagcgt ttccagacgg tgtggcgact
      361 gtctgcaaat gggggattcc gcaaacatga tacctcgata ttgcgatcgt gaggcgcaag
      421 attacaacca tattcgacaa tctggccttt gaaatgaata acgcctgcgg agaccggcgc
      481 ggtagcagcc agcgcggctg atgaagctga catcgctgca caaaacaggt agcagcataa
      541 tggtgatttt ttcatcctgt gaaacctcac gtcctgtgag catcccctta atttttgggg
      601 accaacaaat cccgtgtatt actctttaat gtaaatacac aaactacctt aactttcgca
      661 agctgagata aacagcgcta tacgacaatt tttatgtaaa agagtacgtc ataacggcag
      721 gtcaggaggg aaagcggggc cgcttagcgg aaggggagca taagaaacag ccagtaagaa
      781 taacttaccg gctgttttta cggtttggcg cctgggccga attaatcctg caggtcgccg
      841 cagaagcgat aaccttcgcc gtgaatggtg gcgatgattt ccggcgtatc cggcgtggat
      901 tcgaaatgct tacgaatacg acgaatggtg acgtcaacag tacggtcatg cggcttcagc
      961 tcgcgtccgg tcattttttt cagcagctcg gcacgagact gaattttgcc agggttttcg
     1021 cagaagtgca gcatcgcgcg gaactcgctg cgcggtagtt tatactgctc gccgtccggg
     1081 ccgatcagtg aacggctgtt gatatccagt tcccaaccgt tgaacttata gctttcaacg
     1141 ctacgacgct cttcgctgac ggtacccagg ttcatggtac gggacagcag gttacgggca
     1201 cggatggtca attcgcgtgg attaaacggt ttggtgatgt aatcatccgc gccgatttcg
     1261 aggccgagaa ttttgtcgac ttcgttatcg cggcccgtca ggaacatcag cgcaacatta
     1321 gcctgctcac gcagttcacg cgctaacagg agaccgtttt tccctggcag attgatatcc
     1381 atgatcacca ggttgatgtc atattcagag aggatctgat gcatttccgc gccatctgtc
     1441 gcttcgaata catcatagcc ttccgcttcg aaaatacttt tcaacgtgtt gcgtgttacc
     1501 aactcgtctt caacgataag aatgtgcggg gtctgcatgt ttgctaccta aattgccaac
     1561 taaatcgaaa caggaagtac aaaagtccct gacctgcctg atgcatgtcg caaattaaca
     1621 tgatcggcgt aacatgacta aagtacgtaa ttgcgttctt gatgcacttt ccatcaacgt
     1681 caacaacatc attagcttgg tcgtgggtac tttccctctg gacccgacag tgtcaaaaac
     1741 ggctgtcatc ctaaccattt taacagcaac ataacaggct aagacgtacc ggacacctaa
     1801 taaaactacg cttcgttgac atatatcaag ttcaattgta gcacgttaac agtttgatga
     1861 aatcatcgta gctaaatgct agctttcatc acaaatttgc aatattccaa ctagttacgt
     1921 aagccaacta ataaatgcga tgaatccaaa gaacaggatc tattttaaat taaattatcc
     1981 taaataaaca gcaggataac gatgttctgt taacataaac agcaatagta cagatacgca
     2041 atagtgtagc gtcttttacg aaatcaaaaa tgctttttca gtgatatccg ttaaaatttt
     2101 gtaaatttgc gaagcgtaat atgcttacaa acgccagcta atttcctgta aattagtcaa
     2161 aaagagtaat gaaatgcgtg taacaatcgt tcttgtcgct cccgccagag cggaaaatat
     2221 cggcgcagcc gcccgggcta tgaagaccat gggatttact gacctgcgta ttgtcgacag
     2281 ccaggcgcac ctagagcccg ctacccgttg ggtcgcacat ggatctggag atattattga
     2341 taatattgag gttttccaca cccttgccga cgcgctccac gatgtggatt ttaccgtagc
     2401 gacgacagcc cgcagccggg caaaatttca ttactacgct tcgcccgctg aactggttcc
     2461 cttattacag gaaaaatcac gctggatgcg tcatgccgcg ctggtttttg gccgtgagga
     2521 ttccggtctg accaacgacg agctggcgct ggcggatgta ttgaccggcg tgccgatggc
     2581 ggcggattac ccttcgctca atctgggtca ggcggtcatg gtgtattgct atcaattagc
     2641 aggtttaatg caacagaccc cggaatccgt tgatattgct gatgaatcgc agttacaggc
     2701 gttacgcgcg cgccttttac gcctgctaac cactctggag gcggccgatg accacaaatt
     2761 aaccgactgg ctacaacagc gaatcggcct gctgggacag cgagatacgg caatgttgca
     2821 ccgtttggtc catgatattg aaaaaaaact aacaaaataa cgtgttgtaa tttttaaaat
     2881 aataagagat tacgtctggt tgcaagagat cataacaggg gaaattgatt gaaaataaat
     2941 atatcgccag cagcacatga acaagtttcg gaatgtgatc aatttaaaaa tttattgact
     3001 taggcgggca gatactttaa ccaatatagg aatacaagac agacaaataa aaatgacaga
     3061 gtacacaaca tccatgaacc gcatcagcac caccaccatt accaccatca ccattaccac
     3121 aggtaacggt gcgggctgac gcgtacagga aacacagaaa aaagcccgca cctgaacagt
     3181 gcgggctttt ttttcgacca gagatcacga ggtaacaacc atgcgagtgt tgaagttcgg
     3241 cggtacatca gtggcaaatg cagaacgttt tctgcgtgtt gccgatattc tggaaagcaa
     3301 ttccaggcaa gggcaggtag cgaccgtact ttccgccccc gcgaaaatta ccaaccatct
     3361 ggtggcgatg attgaaaaaa ctatcggcgg ccaggatgct ttgccgaata tcagcgatgc
     3421 cgaacgtatt ttttctgacc tgctcgcagg acttgccagc gcgcagccgg gattcccgct
     3481 tgcacggttg aaaatggttg tcgaacaaga attcgctcag atcaaacatg ttttgcatgg
     3541 tatcagcctg ctgggtcagt gcccggatag catcaacgcc gcgctgattt gccgtggcga
     3601 aaaaatgtcg atcgcgatta tggcgggact cctggaggcg cgtggacatc gcgtcacggt
     3661 gatcgatccg gtagaaaaac tgctggcggt gggccattac cttgaatcta ccgtcgatat
     3721 cgcggaatcg actcgccgta tcgccgccag ccagatcccg gccgatcaca tgatcctgat
     3781 ggcgggcttt actgccggta atgaaaaggg tgaactggtg gtgctgggcc gtaatggttc
     3841 cgactattcc gccgccgtgc tggccgcctg tttacgcgct gactgctgtg aaatctggac
     3901 tgacgtcgat ggcgtgtata cctgtgaccc gcgccaggtg ccggacgcca ggctgttgaa
     3961 atcgatgtcc taccaggaag cgatggagct ctcttacttc ggcgctaaag tccttcaccc
     4021 tcgcaccata acgcctatcg cccagttcca gatcccctgt ctgattaaaa ataccggcaa
     4081 tccgcaggcg ccaggaacgc tgatcggcgc gtccagcgac gatgataatc tgccggttaa
     4141 agggatctct aaccttaaca acatggcgat gtttagcgtc tccggcccgg gaatgaaagg
     4201 gatgattggg atggcggcgc gtgttttcgc cgccatgtct cgcgccggga tctcggtggt
     4261 gctcattacc cagtcctcct ctgagtacag catcagcttc tgtgtgccgc agagtgactg
     4321 cgcgcgtgcc cgccgtgcga tgcaggatga gttctatctg gagctgaaag aggggctgct
     4381 ggagccgctg gcggttacgg agcggttggc gattatctct gttgtcggcg acggtatgcg
     4441 cacgctacgc ggcatttcag cgaaattctt cgccgcgctg gcgcgggcta atatcaatat
     4501 cgtggcgatc gctcagggat cttctgagcg ttccatttct gtggtggtga ataacgacga
     4561 tgccaccacc ggcgtgcggg taacgcacca gatgctgttc aataccgatc aggtgattga
     4621 agtgtttgtc attggcgtcg gcggcgtcgg cggcgcgcta ctggaacagc ttaaacgtca
     4681 gcaaacctgg ctgaagaaca agcacatcga tctacgcgtg tgcggcgtgg cgaactcaaa
     4741 ggcgttgcta accaatgtgc atggcctgaa tctggacaac tggcaggcgg aactggcgca
     4801 agcgaacgcg ccgttcaatc tgggacgttt aattcgcctg gtgaaagaat atcatctact
     4861 caatccggtg attgttgatt gtacctccag tcaggcggtg gccgaccagt atgccgactt
     4921 cctgcgcgaa gggttccatg tggtgacgcc gaacaagaaa gcgaacacct cgtcgatgga
     4981 ctactaccat cagctacgtt tcgccgccgc gcaatcacgg cgcaaattct tgtatgacac
     5041 caacgtcggc gccggtttgc cggtaatcga aaacctgcaa aacctgctga atgcgggtga
     5101 tgaactgcaa aaattttccg gcattctttc cgggtcgctc tcttttattt tcggtaaact
     5161 ggaagagggg atgagtctct cacaggcgac cgctctggcg cgcgagatgg gctataccga
     5221 acccgatccg cgcgacgatc tttccggtat ggatgtggcg cgtaaactgt tgatcctcgc
     5281 ccgcgagacg ggccgcgagc tggagctttc cgatatcgtg attgaaccgg tgttgccgga
     5341 cgagtttgac gcctccggcg atgtgaccgc ctttatggcg catctgccgc agcttgacga
     5401 cgcgtttgcc gcccgtgtgg cgaaagctcg tgatgaaggt aaggtattgc gctatgtggg
     5461 caatatcgaa gaggatggcg tgtgccgcgt gaagattgcc gaagttgatg gtaacgatcc
     5521 gctcttcaaa gtgaaaaacg gtgaaaacgc gctggcgttc tacagccatt attatcagcc
     5581 cttgccgttg gtgctgcgcg gctacggcgc aggcaatgat gtgacggcgg cgggcgtgtt
     5641 tgccgatctg ttacggaccc tctcatggaa gttaggagtt taacatggtg aaagtgtatg
     5701 ccccggcttc cagcgcgaac atgagcgtcg gtttcgacgt gttgggcgcg gccgtcacac
     5761 ccgttgacgg cacgttgctg ggcgatgtgg tatccgttga agcagcggat catttccgtc
     5821 tgcataacct ggggcgattt gccgataaac tgccgccgga gccgcgtgaa aatattgttt
     5881 atcagtgctg ggaacgtttt tgccaggcat tggggaaaac catcccggtg gcgatgacgc
     5941 tggaaaaaaa tatgccgatt ggttccgggt tagggtccag cgcctgttcc gtcgtcgccg
     6001 cgctggtcgc gatgaatgag cactgcggca aaccgttaaa cgacacgcgt ctgttggcgc
     6061 tgatgggcga gctggaaggc cgtatctccg gcagcatcca ttacgataac gtcgcgccgt
     6121 gctttcttgg cggtatgcag ttgatgattg aagaaaacgg cattattagt cagcaggtgc
     6181 cgggctttga tgagtggcta tgggtactgg cttatccggg cattaaagtt tccaccgcag
     6241 aagcacgggc cattttgcct gcgcagtatc gccgtcagga ttgcattgcg catggacggc
     6301 atctggccgg ttttattcac gcctgttact cgcggcagcc gcagcttgcc gccgcgctga
     6361 tgaaagatgt tattgccgaa ccataccgcg cgcgtttact gccgggcttt agccaggcgc
     6421 ggcaggcggt gtcggagatc ggcgcgctgg cgagcgggat ttccggatcg gggccgacgc
     6481 tgtttgcgct atgcgataaa ccggagacgg cgcagcgcgt cgcggactgg ctgagcaaac
     6541 attatctgca aaatcaggaa ggcttcgttc atatttgtcg gctggatacg gcgggcgcac
     6601 gagtagtggg ataatcaatg aaactctata atctgaaaga ccataatgag caggtcagct
     6661 ttgcgcaggc cgtcacgcaa gggctgggca aacagcaggg actttttttt ccgcacgatc
     6721 tgccggagtt tagcctgacg gaaattgatg agatgctcaa ccaggacttt gtcagccgta
     6781 gcgcaaagat cctctcggca tttattggcg atgaaatacc gcagcaaatt ctggaagagc
     6841 gcgtccgcgc ggcgtttgct ttcccggcgc cggtagcgca ggtagaaagt gatgtcggct
     6901 gcctggagct gttccatggt ccgacgctgg cctttaaaga cttcggcggg cgttttatgg
     6961 cgcaaatgct gacgcatatc agcggcgata aaccggtgac gattctgacc gcaacgtcag
     7021 gcgataccgg cgcggcggtg gctcacgcgt tctatggcct ggaaaatgtg cgggtcgtca
     7081 ttctctaccc gcgcggtaaa atcagtccgt tgcaggaaaa actgttctgt acgctgggcg
     7141 gcaacattga gaccgtggcg atcgacggcg atttcgacgc ttgccaggcg ctggtgaaac
     7201 aggcatttga tgacgaagaa ctgaaaacgg cgctggggtt gaattcggct aattcgatta
     7261 atatcagccg cctgctggcg caaatttgct actactttga agccgtggcg caactgccgc
     7321 agggggcgcg taaccaactg gtgatctccg tacccagcgg caactttggc gatttgacgg
     7381 caggactgct ggcgaagtcg ttaggcctac cggtgaaacg ctttatcgcc gccaccaaca
     7441 ttaacgatac ggtgccgcgt tttctgcatg acgggaagtg ggcgccaaaa gcgacgcagg
     7501 cgaccctgtc gaatgcgatg gatgtcagcc agccgaataa ctggccgcgt gtggaggagc
     7561 tattccgccg taaaatctgg cgtctgactg agctgggcta tgcggcggtg gatgacacta
     7621 cgacacaaca gacgatgcgc gagctgaaag cgaaaggtta tatctcggaa cctcatgcgg
     7681 cggtagcgta tcgggcatta cgcgaccagt taaaccctgg cgagtatggc ttgtttctcg
     7741 gaacggcgca tccggcgaag tttaaagaaa gcgtggagtc cattctggga gaaacgctgg
     7801 cattgcctga agcgctcgcc gaacgcgccg atctgccgtt gctttcacat catctgcctg
     7861 cggattttgc cgccctgcgt aagctaatga tgacccgcca gtaaccattg cgcccggtgg
     7921 cgctgtcgct taccgggcct atggggtggt gccgatttgt aggccggata aggcgtaacc
     7981 gccatccggc gatgtcgtta ctgctcgtag cgtttaaaga ccagctcgtc ttgtgtggag
     8041 gtttcttcat caaagaaata cccttcacgg tcaaacgcgg taagctgttc cggcttcgtt
     8101 aagcggtttt caataataaa acgactcatc agtccgcgcg cttttttggc gtagaagctt
     8161 accaccttaa acttgccgtt tttctcatca aggaatacgg gcttaatcag ttcggcatcc
     8221 agtttcttcg gcttcaccga tttaaaatat tcctcggagg ccagattcac caccacccga
     8281 tcgccctgcg cctcaagcgc ttcgttgagc ttatcggtaa tgatatcgcc ccagaattga
     8341 taaagatctt tgccgcgcgg attctccagg cgaatcccca tctccagacg ataaggctgc
     8401 attaaatcca gcgggcgcaa tacgccatac aagccagaga gcatacgcag atgttgttga
     8461 gcaaaatcaa aatccgcgtc gttgaacgtt tccgcctgta ggccggtata aacatcgcct
     8521 ttgaacgcca gaatcgcctg gcgtgcatta tccggcgtaa aatgaggctg ccagtcatga
     8581 aaacgcgtgg cgttgagatc cgccagtttg tcgctaattc ccattagcct ggaaatttgc
     8641 ggcgccgaaa gctggcgggc ctgttgaata agctgctggc tgtgatccaa cagctccggc
     8701 tgggtatagc gggtcgtggc cagcgggctt tgataatcaa gcgtttttgc aggtgaaatc
     8761 agaatcagca tatccagtcc ttgcagggaa ttttctgcga ctttagcaaa aaaacgccgc
     8821 agagttgacc gatggttgcg attgtcggct taatcgcgcg atgccgcatc ccaggtatct
     8881 ggcgccagtt gtggttcgat atccgggaag cgccgcggat cgaactgcgg tcttacgccc
     8941 agtttccgtt gtcgcagata atcgccggcg agggtataca ccaccggtga gagcaacaaa
     9001 atcgccgtca gattggtaat ggccatacag gccatgatca tgtcagcgag ctgccatatc
     9061 agcggaaaac tgataagcgt accggcgatg accatgccaa gcgtcgcaag acgtaatagc
     9121 cagatggcct ttgcgttatg taaccgcaga aaaaagagat tgttttcggc gtaaatatag
     9181 ttggcgacga tagaactgaa cgcgaacaga atgacgataa gcgcgacaaa actggcgccc
     9241 cattcaccgg tcaacgaaac cattgcatgt tggagaagct gaatgccttc tgttgacgaa
     9301 tgggacgcgt gattccccgc cagcaggata atcatcgcgc tggcggtaca gatgataatg
     9361 gtgtcgctga atacgccaat catttgcaca atcccctgcg cgacagggtg agggggatac
     9421 gacgttgccg ctgcggccgc attaggcgtt gaccccattc ccgcttcatt agagaacatc
     9481 ccacgctgaa aaccgctggt aatagcctgg gtgagcgtat atccggctgc gcctgccgcg
     9541 gcttcctgcc agccaaatgc gcttttgact atcgaggcga taacgccagg catttgctca
     9601 atatgccaga ggcaaatgaa tacgctgcca gcgacccaca ataacgcgat gaggggaatc
     9661 agccattgca tcaggcgggc gacgcctttt atgccgcgga tgataattaa cagggcacag
     9721 aacgccaaag caatgccgga gataagcggc ggaatgttga aggcgaaatg gagcgcgcgt
     9781 gagacggcat tcgcctgcac gctattaaaa atcaacccgt aggcgacgag cagaaagagg
     9841 gcgaaaacca cgcccatcca gcgcattccc agcccgcgcg ccatatacca cgccgggccg
     9901 ccgcggaact ggcctgtcgg gtcacgttct ttataaagct gggcaagcga acactcggcg
     9961 aaggaggtcg ccataccaat gatggccgag acccacatcc agaatactgc gccgggaccg
    10021 cctgcggcga tagccagcgc cacgccggcc agattaccgc tgccaatccg cgccgcgagg
    10081 ctggtacaca gcgcctgaaa tgacgtcagg ccgcctggct gcgggctaag gctgcctttc
    10141 agactgcggc taaattggcg aatataacga aactgaatga atccggtacg ccaggtaaac
    10201 caacatcctg cgccgagcag caggtaaatc attaccgagc cccagagtat ttcgttaata
    10261 aaactgaaaa actcaggcat taacgtccct cttgttgatg ccgacacgct ttgatgatcc
    10321 tgtataagcg tgacccatga tgtagatgac cttgtcaggc taatattaac ggtagtttac
    10381 cataaatacg gcggtatcct ttaattgcgc atcaaccgtc ggcagatacg caaacagttc
    10441 acaagggcag ccaggtgcat gtaggcggtt gcgctgtgag tgcgtcgtgt tatcatcagg
    10501 gtagaccggt tacatcccct aacaagctgt ttaaagagaa actctatcat gacggacaaa
    10561 ttgacctccc ttcgtcagtt caccaccgta gtggctgata ccggagatat cgcggcaatg
    10621 aagctgtacc agccgcagga tgctacaact aacccttctc tcattcttaa cgcagcgcaa
    10681 atcccggaat atcgtaagct gattgacgat gctgtcgcct gggcgaaaca gcagagcagc
    10741 gaccgcgcgc agcaggttgt tgacgcgacc gataagctgg cggtgaatat tggcctggaa
    10801 atcctgaagc tggtgccggg gcgtatttct accgaagttg acgcgcgtct atcttatgac
    10861 actgaagcgt ctatcgccaa agcaaaacgt atcattaaac tctacaatga tgcgggtatc
    10921 agcaacgatc gtatcctgat caagctggcg tccacctggc agggcattcg cgcagccgaa
    10981 cagctggaaa aagaaggcat caactgtaac ctgacgctgc tgttctcctt cgcgcaggcg
    11041 cgtgcgtgcg ccgaagcggg cgtctacctg atctcgccgt tcgtaggtcg tattcttgac
    11101 tggtataaag ccaataccga caagaaagac tatgcgccag ctgaagatcc gggcgtggtt
    11161 tccgtaacgg aaatctacga gtactacaaa cagcatggtt acgaaaccgt cgttatgggc
    11221 gcaagcttcc gtaacgtagg cgaaattctg gagctggcgg gctgcgaccg tctgactatc
    11281 gcgccggcat tgctgaaaga actggcggaa agcgaagggg cgattgagcg taagctctct
    11341 ttctccggcg aagtcaaagc gcgtccggaa cgtattaccg aagccgagtt cctgtggcag
    11401 catcaccagg accctatggc ggttgacaaa ctggcggatg gtatccgtaa gtttgcggta
    11461 gaccaggaaa aactggaaaa aatgatcggc gatctgctgt aatcattaac gcgtggccct
    11521 gatatgggtc acgctacctc ttctgaaacc tgtctgtcct tcctttcgca gtgtatcatt
    11581 ctgtttaacg agactgttta aacggaataa tcatgaatac tttacgcatt ggcctggttt
    11641 ccatttctga ccgtgcttcc agcggcgttt accaggataa aggtatcccg gcccttgaag
    11701 agtggctggc atctgccctt accacccctt ttgagctgca aacgcgactg atcccggatg
    11761 aacaggcgat catcgaacag accttatgtg aactggttga tgagatgagc tgtcatctgg
    11821 tgctgaccac tggcggtacc ggtccggcac gtcgcgacgt cacgccggac gcgacccttg
    11881 ccatcgccga ccgtgaaatg cctggttttg gcgaacagat gcgccagatc agcctgcgct
    11941 ttgtgccgac cgccattctt tcccgccagg tgggcgttat ccgtaaacag gcgttaattc
    12001 ttaatctgcc tggacagcca aaatcgatca aagaaacgct ggaaggcgta aaagcggacg
    12061 atggcagcgt tagcgtgccg ggcatttttg cgagcgtgcc gtattgcata cagctgcttg
    12121 acgggccgta tgtcgaaacc gcgccggaag tggttgccgc tttccgtcca aagagcgcca
    12181 gacgtgagaa tatgtcgtcc tgaccgggag atactgatag tagggttatt cctcccggtg
    12241 cgggaggaat aaaagagatt tagtgcgcct cgccgattgg caaaatagtg cggccaaatt
    12301 gctcgtttag cacttcaccc atcgccagat aaatagcgct ggcgccgcaa accagaccaa
    12361 cccagcctgc gatatggata gttgcttcgt taccggtgat attgccgacc gccagcagag
    12421 cgaacagtac ggtcaggctc aggaaaacaa attgcagcgc gcgggcggct ttcagcgtac
    12481 cgaagaacat aaacagcgtg aacacgcccc acagacctaa ataagcgccg agtagctgag
    12541 cgtcaggcgc atccgtcagg cccattttcg gcatcagcag gatagcgacc agcgtcagcc
    12601 agaacgaacc gtaagaagta aaggccgtta aaccaaaggt attgcctttt ttatactcca
    12661 gcagaccggc aaaaatttgc gcgataccgc cgtagaaaat ccccatcgcc agaataatac
    12721 cgtccagggc gaaaaaaccg gcattgtgca ggttaagcag aatggtggtc atgccgaagc
    12781 ccatcaggcc cagcggtgcc ggattagcca acttagtgtt gcccataatt cctcaaaatc
    12841 atcataattg aatggtgaaa tagtttccca gaataacgag ttccgtattc ggggcgcggc
    12901 ataataatca gggggaagag gactgtctat gatctaataa gggggaaaag aaaatatttc
    12961 cccctgtgag ggcattcacg cctgaacggc tgccatcatt cgtcgcaggc aggctatttg
    13021 caagaccgcc ggaatagtca cgcgatacgc gctgccgctc atcgctttga cgccgtttaa
    13081 tgccgcgccg accgggccgc caagacctgc gccgcgcagc aatccgtggc ccaggatgct
    13141 cattgcggca tgggtacgta aaatgcgggt aagctgggtg gaaagcaggt gggagacccc
    13201 ttttgccaga ctgcgatctt tcatgagcag cggcagcagt tcttccagtt cagaaacttt
    13261 ggcgtctacg gcttgcagaa attcctgctt atgcgccgcg tccatcttct gccaggtatg
    13321 acgtaaaaaa tgctccagca gttgctgttc tatttcaaac gtcgacatgc ttttatctgc
    13381 tttaagtttt agccgttttg cgacatccag cagaatcgcg cggtactgtt ttccgtgtcc
    13441 gcgcaatttg ttggcgatac tgtcgccgcc gtaatgctga aactcgccgg caatgagctg
    13501 ccagttacgg cggtgttgct ccgggtgacc ttccatcgct ttgaacagct cgttatgact
    13561 aaggacgctc gacaagcgag ctttgccctt ttcgttatgc gtcagcaaac gggcgaaatc
    13621 ggcgagttgt tcttcgctac aatgctgaag aaagtctaaa tcctcgtcgt gtaaataggt
    13681 gacgttcatt ttcagtctgg cttttggaat agaaataaca gcgattaatc gtcgccaatg
    13741 actttaagtc tcgccatatc ggaagaattt accgtatgac ctgagaaggt aatctttgat
    13801 acgcagcgtt tgttgtcgtt atcgctatta atattgatcc agcctgtcgt ctggccttct
    13861 ttgattgagg aagggacgtt caggctttgg ctggcgctac gcgcagtttt aaaatagacg
    13921 gatgcgccgc taagttcgat atcgccgtga tccgccgtga gttgaatgcg cttcacgatg
    13981 cggcagacgg gaattttcag cgcgagatcg ttcgtttcat ttctgggcat ggcaataaca
    14041 cccagtattt tatggtcgtt cgcgtgcgcg acgctactta acgccaggcc gaaaagcagg
    14101 ccgacggaaa tcgttaacac agatcgcatg aaatttctct ttgacgggtt caataagcaa
    14161 ttaccgtcta tcatactctg ctcatgacaa cgattcagtt ttgtaatctt ttctttttat
    14221 tacaattttt ccgtgaatgg tattcgttgt ttaatttatt ttatgaatgt ttacctgtct
    14281 ggttttccat cgcgccctct cgtcaataaa aaattttttc atctccccct tgatgacgtg
    14341 ggttacgacc ccatcttgt
//
LOCUS       DAJVSD010000100        14283 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.100, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000100 DAJVSD010000000
VERSION     DAJVSD010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 14283)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14283)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14283
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.100"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            187..654
                     /locus_tag="OQP62_002432"
     CDS             187..654
                     /locus_tag="OQP62_002432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20 family protein"
                     /protein_id="HCS1721963.1"
                     /translation="MALRTLSALPVFADSLFSDRFNRIDRLFSQLTGDTPVAATPAYD
                     LQKRDANNYLLTVSVPGWKEEELEIETVGGNLNITGKHTEETVEDQTHWIYRGIRKAD
                     FQLSFSLPEHAKVNNAKLEQGLLLVEIYQEIPESEKPKKIAIESKPKAIEHKS"
     gene            993..2036
                     /locus_tag="OQP62_002433"
     CDS             993..2036
                     /locus_tag="OQP62_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-alpha-sialidase"
                     /protein_id="HCS1721964.1"
                     /translation="MKLALVNRQVILPESGTESFQCHASTLVRLPCGTLVAAWFAGLC
                     EGSEDTAIWLSRYEHNIWTTPQRVAAREGEAHWNPVLFYPSDKLWLFYKVGSGVHVWK
                     TWFITSSDRGFTWSTPAPLVNDDILPRGPVKNKLLLASNGAWIAPGSIESPERWRAFV
                     DRSSDEGKHWNISFVPLEPDNAISGTNVALWDGVKKGMLWECCLENLLRWDGVIQPTL
                     WESSPGHIHMLLRSTRGAIFRSDSIDYGATWSVARATFLPNNNSGIDLVSMQDGTLIL
                     ALNPVNGNWGKRYPLSLIASQDNGESWLPLLDLESDHGEYSYPAIISKGGVVHITYTW
                     NRKNIVYCRLQTV"
     gene            complement(2119..2649)
                     /locus_tag="OQP62_002434"
     CDS             complement(2119..2649)
                     /locus_tag="OQP62_002434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HCS1721965.1"
                     /translation="MAHFSRLQITLHWLTLLLTGIAYAAIELRGWAPKGSSVYLFMKD
                     MHYDMGVLVWALMFLRLYLKHKYPDPVITPPPPHWQHVAAKLMHIALYLTFLALPLLG
                     VAMMASGGKSWSFFGFTVPVFLTPDSTLKSDIKRIHEMLANIGYFLIAMHAAAALFHH
                     YIQKDDTFSRMLPGKS"
     gene            complement(2798..3112)
                     /locus_tag="OQP62_002435"
     CDS             complement(2798..3112)
                     /locus_tag="OQP62_002435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRL-like family protein"
                     /protein_id="HCS1721966.1"
                     /translation="MTNKKHIFSIIFIGSLLTGCATGPSPTGIGLYTDVKGPITATSL
                     PATKTGKACAQTVLGIVNTGDASIDSAKKAGDISLVSSVDYETTGSYPFYGKTCVVVR
                     GQ"
     gene            3816..5450
                     /locus_tag="OQP62_002436"
     CDS             3816..5450
                     /locus_tag="OQP62_002436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS1721967.1"
                     /translation="MLRREKQKQRIIWDKLMIKGKLALVTCALTLVFTSSLFAASDTA
                     DGRTLKLAIGPEPTEGFDPMLGWSHGSYLLLHAPLLKQNADMSWGDLLTEKVDTSPDG
                     KIWTLTLKPGLKFSDGSPLTAEDVVFTYNKAAKSGGKIDMGNFSHARALDARRIEMTL
                     SHPQSTFVNVLGSLGIVPASRYDEKTFAREPIGAGPYRLVSFQPGQQLIVEANPWYAG
                     KKNDFNRLVFVFLDEDNAYAAARSGQLGLVRIAPSMAVTPQQDNLKLWVRDSVENRGI
                     VFPMVPAGKKDANGYPVGNDVTADVAIRRAINYAINRKQLAEQVMEGHAIPAYSAVQG
                     LPWQNPSVVFSDGDIAKARAILEEAGWKINSAGVREKAGKEARLTLWYASGDSTRRDL
                     AEAVRAMLQRLGIVVSLQSGSWETVERHMHANPTLFGWGSLDPMELFHHYSGKAAGVE
                     YYNPGYYSNPAVEAHLKQAIDAPDWQKAIPFWQQVEWDGKQGAGVQGDAAWAWLLNIQ
                     HTYLANPCIDLGKGSPEIHGSWSVLNNLDDWTWTCR"
     gene            5450..6424
                     /locus_tag="OQP62_002437"
     CDS             5450..6424
                     /locus_tag="OQP62_002437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1721968.1"
                     /translation="MKLFFSHFLRLIILLVLVAAGTFILLSFSPVDPIRAYIGNDLLH
                     VPPEQYARIAARWGLDQPLWERFGHWFWRLLQGDMGYSMLFNMPVASVIRERFATSFA
                     LLAGAWLLSGVLGVTLGFLAGRFLHRWPDKMICRISYLLSSLPTFWIAMLLLALFAVR
                     WPVLPVCCAWDPGNNAGTALLSERLRHLVLPVCALSLLGMGQIALHTREKIASVMKSE
                     FIRFARAQGDKGWSLLRHQVLRHAITPALCLQFASLGELMGGALLAEKVFAYPGLGQA
                     TIDAGLRGDVPLLMGIVLFCTLLVFAGNTISAWLVVVLNRSLERPDAL"
     gene            6414..7226
                     /locus_tag="OQP62_002438"
     CDS             6414..7226
                     /locus_tag="OQP62_002438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1721969.1"
                     /translation="MLYNPAPTLFRLLLSVTCLLFIAGYGYATLSQPPEVNLLARHLS
                     PDIQHWFGTDNLGRDVWLRCFQGAFTSLQIGVGAALCSGVIALVMAAVARIHPRLDLL
                     VRLITDAMLAMPHLLLLILICFTLGGGKSGVIAAVALTHWPRLALILRADAERVAQSD
                     YLTLTYRLGHGHLYCWRYHYFPALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEP
                     SLGLLLADALRFISHGNWWLVLFPGLMLFTLVMLFDQFARAIQRLWLRSDVC"
     gene            7220..8017
                     /locus_tag="OQP62_002439"
     CDS             7220..8017
                     /locus_tag="OQP62_002439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HCS1721970.1"
                     /translation="MLSLQRVTLESARYRWYGARRWSPLLQNVSFDIAPGEMVALVGG
                     SGEGKSLLLQCLLDLLPENLRFRGEITLDGNRLDRHTIRQLRGNTFSYVPQGVQALNP
                     MLNIRKHLNRACHLTGRAWDETQMVQLLQQSDLAPTVLERFPRQLSGGMAKRILACHA
                     SLSQARYILADEITAWLDTALANQLLEHLRGLCERGCGVLWVTHDLLLAARYADRIVA
                     LHQGYITDNIRCERLQPEEMSEPLKRQWQALPELNPLFMPTGEGIEC"
     gene            8011..8601
                     /locus_tag="OQP62_002440"
     CDS             8011..8601
                     /locus_tag="OQP62_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HCS1721971.1"
                     /translation="MLSCRDLVIRQGGKVLWQNLTFTISAGERVGIHAPSGTGKTTLG
                     RVLAGWQKPTTGDVLLDGSPLPLHQYCPVQLVPQHPELTFNPWRSAGDAVRDAWQPDP
                     ETLRRLYVQPEWLTRRPMQLSGGELARIAILRALDPRARFLIADEMTAQLDPSIQKAI
                     WVYVLEVCRSRSLGMLVINHQSALLDQVCTRHLQVE"
     gene            complement(8683..9816)
                     /locus_tag="OQP62_002441"
     CDS             complement(8683..9816)
                     /locus_tag="OQP62_002441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HCS1721972.1"
                     /translation="MEYLARLNIVAMLMSTTFWINLAVVFFVTLITYWLINWLLNVVY
                     KALQRPDKKDDAHGRLRPIVFEMLKKTSKMLIFFAAFLFSLRFVALPDRLFSTLSHAW
                     FLVVAIQMAIWLDQGVQSWMRHLLYAPGSNKNPVTLVILGMILRVLVWSMMLLSILAN
                     VGVDITALVASLGVGGIAIALAVQTVLSDVFASLSIGFDKPFEIGDFVVFNDVAGTIE
                     HIGLKTTRIRSLSGEQIVCANAQLLQQTIHNYKRMQTRRIVFTFGVATATPPEKLRLI
                     GDMVKKIITDVGETQFDRAHLLAFGQDRLTYEVVHIVNTADYNKYMDIQQEINIRIIE
                     KLIENDIELALPSLVVRAPVQVEETRDYSNTADAKNADKRVMQ"
     gene            10010..10336
                     /locus_tag="OQP62_002442"
     CDS             10010..10336
                     /locus_tag="OQP62_002442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-helix bundle copper-binding protein"
                     /protein_id="HCS1721973.1"
                     /translation="MQQEHRECIEQCYECAAACDICASSCLREDNVEMMKHCIELDMQ
                     CAAICRLAAQFMALESEYSQKLCRLCADICKACAEECARHDHDHCQNCARACSQCADA
                     CLKMAA"
     gene            10345..10421
                     /locus_tag="OQP62_002443"
     tRNA            10345..10421
                     /locus_tag="OQP62_002443"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10379..10381,aa:Arg,seq:tct)
     gene            10533..11180
                     /gene="zinT"
                     /locus_tag="OQP62_002444"
     CDS             10533..11180
                     /gene="zinT"
                     /locus_tag="OQP62_002444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460229.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-binding protein ZinT"
                     /protein_id="HCS1721974.1"
                     /translation="MIHLKKLTMLLGMLLVNSPAFAHGHHAHGAPMTEVEQKAAAGVF
                     DDANVRDRALTDWDGMWQSVYPYLVSGELDPVFRQKAKKDPEKTFEDIKAYYRKGYAT
                     NVETIGIENGVIEFHRDNNVASCKYNYAGYKILTYASGKKGVRYLFECKDANSKAPKY
                     VQFSDHIIAPRKSAHFHIFMGNTSQQALLQEMENWPTYYPYQLKANEVVDEMLHH"
     gene            11289..12077
                     /gene="aadA"
                     /locus_tag="OQP62_002445"
     CDS             11289..12077
                     /gene="aadA"
                     /locus_tag="OQP62_002445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cryptic aminoglycoside nucleotidyltransferase
                     ANT(3'')/ANT(9)"
                     /protein_id="HCS1721975.1"
                     /translation="MTLSIPPSIQCQTEAACRLITRVTGDTLRAIHLYGSAVAGDLKP
                     NSDIDLLVTICQPLTETQRATLMQELLALSSPPGASAEKRALEVTVVLYSQLVPWCFP
                     PSREMQFGEWLREDIYQGIYEPAQQDWDMVLLITQILETSIPLKGERAERLFTPAPAA
                     QLLKALRYPLDLWQSTADVQGDEYHIVLTLARIWYTLSTGRFTSKDAAADWLLPQLPE
                     EYAATLRAAQREYLGLEQQDWHILLPAVVRFVDFAKAYIPTQFT"
     gene            12222..12815
                     /locus_tag="OQP62_002446"
     CDS             12222..12815
                     /locus_tag="OQP62_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1721976.1"
                     /translation="MTGSASSVLKTDTRLLSENLFLNYGLESLFKDVAIIAGNVNYIV
                     FDIDDYYTVQQYITSTFKTVLIGIVTHNEYNFIDEHHAIYRIKVDASIAEWRELLILA
                     AAGQFFPRSEKVRLTANERNVLAMLVKGMDIRQISCELNVHLKTIYSVRYHVLTKLGC
                     RTVLDYQILSVSKAFTHWLTINNVDNVIFRVNSKVIA"
     gene            12884..13732
                     /locus_tag="OQP62_002447"
     CDS             12884..13732
                     /locus_tag="OQP62_002447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HCS1721977.1"
                     /translation="MATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEAGNRFYCIE
                     DAIRIQHIIDALSKGFSLKEIKPALYGEETHCRSGWLFYQEEILAQCRKFEPAKLRKL
                     LWRYGREIPPCIVIESILRPLWLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKA
                     PAGTMLIAAFSLNDPIELWLETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDE
                     TLTPAQENLIQALKESGKFSLHVKNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYE
                     KSGTAR"
     gene            complement(13987..14235)
                     /locus_tag="OQP62_002448"
     CDS             complement(13987..14235)
                     /locus_tag="OQP62_002448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HCS1721978.1"
                     /translation="MTTITLVNEQNSTGNPFSAHMLCEQRAIQEITYELLQSQQHVSN
                     KDIIAKLIEKLETEKDVVQLDIYRNALEAVFFQTPDDI"
BASE COUNT         3498 a         3309 c         3733 g         3743 t
ORIGIN      
        1 tgtaaagatg aagggacagc ggaaatggca atgaacggga tgagattttt cgttaaccac
       61 ttaaattcgt gactaaaaaa agtcttttat aggcttgaaa atgttttttc cgtccctatg
      121 tagtcagtgg acaagcaatg cttgccttga tgttgaactt ttgaatagtg attcaggagg
      181 ttaatgatgg cactcagaac cttgtcagca cttcccgtgt ttgctgattc tcttttctct
      241 gaccgtttca accgtattga tagacttttc agtcaattaa caggagatac gccagtcgct
      301 gcgacgccag cttacgatct gcaaaagcgc gatgcgaata actatctgct taccgtgagc
      361 gttcctggct ggaaagagga agagcttgaa attgaaacgg ttggcggcaa cctgaatatt
      421 acgggtaaac acactgaaga gacggtagag gatcagacgc actggattta tcgtggtatt
      481 cgtaaggcag atttccagtt gagtttttct ttgcctgaac atgctaaggt gaataatgca
      541 aaactggaac agggcctctt gttggtagag atttaccagg aaatccctga aagcgagaaa
      601 ccgaaaaaaa ttgccataga aagcaaacca aaggcgattg aacataaatc ataaaagcat
      661 taatggaggc ccgtttagac gggccttcat tgtctgtagc gaaaagtatc ccgtcatgct
      721 tgtaggcaca gatcgctaaa tattatagcc ctgacctcta tattatcccg tgccactgac
      781 ctcgtcgcca ttggacggcg gtaagttgga attatccgcg aggtcagtcc aatttttgtc
      841 cactctcgac attctgcctg ttatgggcgc gatacctgaa cataaattcg tatagcggtt
      901 gatcgttttc accgcgttga tgctatttct gctaacacta ctttcatacg taaaaaagct
      961 gatgcttttt accttattta atagaggcag gtatgaaatt agcgctcgtc aatcgacagg
     1021 tcattttacc ggaaagcgga accgagtcct tccagtgcca tgcctctacg cttgttcgcc
     1081 taccgtgcgg tacgctcgtg gccgcatggt tcgcggggtt gtgcgaagga agcgaagata
     1141 cagccatctg gctatctcgc tatgaacata atatctggac aacaccgcag cgagtggcgg
     1201 cacgcgaggg ggaagcgcac tggaatccgg tgttatttta cccgtcggat aaattgtggt
     1261 tattttataa agtaggcagc ggcgtacacg tgtggaaaac ctggtttatc acctccagcg
     1321 atcgaggatt tacctggagt acgccagctc cgttggttaa cgatgatatt ttgccgcgcg
     1381 gtcccgtaaa aaataaactc ctgctggcat caaatggcgc ctggattgcg ccagggtcga
     1441 ttgaaagtcc tgaacggtgg agggcatttg tggatcgatc ctctgacgaa ggaaaacact
     1501 ggaatatctc ttttgttccg ctggagcctg ataacgctat ttccgggaca aacgtagcgt
     1561 tgtgggatgg tgtaaaaaag gggatgttgt gggaatgttg tctggaaaac ctcctgcgct
     1621 gggatggcgt tattcagcct acgctgtggg agtcttctcc ggggcatatc catatgttgt
     1681 tacgaagcac acgcggggca atttttcgca gtgattcaat cgactatggc gctacctggt
     1741 ctgttgcccg cgcgacattt ttaccgaata ataatagtgg tatcgatctg gttagtatgc
     1801 aggacggtac gctgattctt gcgttaaatc cggtcaacgg caactgggga aagcgctatc
     1861 cgctttcact gattgcttcc caggataatg gcgaatcatg gctaccgcta ctggacctgg
     1921 aaagtgacca cggtgagtat tcttatcccg ctattattag caagggcggc gtcgtacata
     1981 tcacctacac gtggaaccgg aaaaatatcg tatattgtcg attacaaacg gtataaggcg
     2041 ctatcagtcg aaaccgatag cgctggaata ataatgcctt gcccggcgtg ctctctcacg
     2101 tcgggatggc cgaaatagtc atgatttacc gggtaacatc cttgaaaatg tatcgtcttt
     2161 ttgtatgtaa tggtgaaaca acgccgctgc tgcatgcatg gcaatcagga aatagccgat
     2221 attggccagc atttcatgaa tacgctttat atccgatttt agggtgctat ctggcgtcaa
     2281 aaataccggt acagtaaaac caaaaaagct ccagcttttc ccgcctgatg ccatcatcgc
     2341 gacgcccagc agcggtaagg cgagaaaagt gagataaagc gcgatatgca ttaatttagc
     2401 ggctacgtgc tgccagtgag gagggggagg cgtaatgacc ggatccgggt atttgtgttt
     2461 aagatataac cgtaaaaaca tcagcgccca gaccagaacg cccatgtcat agtgcatgtc
     2521 tttcataaat aggtaaacgc tggagccttt tggcgcccac ccccgtaact caatagccgc
     2581 atatgctatg cctgtcagga gcagtgttaa ccagtgaagc gttatttgca gtcttgagaa
     2641 atgtgccatt attattatcc tttattaaca actgcttgta gggtatgcgt aaaatcttaa
     2701 cagaacctta aagcgggggc tgagtcgcaa ggaacagaca gagatagcgg cacgtaaaat
     2761 gggataaaaa gccggcggca tcgccggctt actgttgtta ttgtcctctt acgacaacac
     2821 aggttttacc ataaaacgga tatgagcctg tagtttcata atcaacactc gacactaaag
     2881 aaatatcgcc cgcttttttc gctgaatcaa tagatgcgtc gccggtattt acaataccca
     2941 ataccgtttg cgcacacgct ttaccggttt tggttgccgg gagactcgtg gcagtaattg
     3001 gccctttaac atccgtatat aagccaatcc ctgtcggtga tggtcctgta gcacaccccg
     3061 ttaaaagaga accaataaag ataattgaaa aaatgtgttt tttatttgtc atgggattag
     3121 tccattataa attaatagaa aacttaccgt ccgaaaatgt ccggacagtc atttaaaaag
     3181 tggtgtatat taaatatgcg atattactct ttgcaccctc ctgttgatgt cgtacctgat
     3241 ggacaaatat ccgttgaagc cggatatatt ccccatgccg tgtttttata acttgcgcat
     3301 cctgtcagca atgagaacag tacggctaaa aaaatcatca cgagccctgg cggcgttaac
     3361 atttttcggt tggactccat agcatgtcat ttcatcgggt tgccatatga ctggcgttct
     3421 gctggtaagt ttcattaacg cctggttcgt ttaatattgg tttaggttta aagccaggaa
     3481 gcgctaatta cgataccttc ttacgtttca gtactgacta ataacgttga gaaaatgaac
     3541 agcgtcggat gggaagacgt aatacagaat agaaaggaaa taagagaata agatggcgtt
     3601 aattaacccg gtattcctgg cgtcatttcc cttgcgtttt atccccgtca aaagtggcct
     3661 ttagcccacg ttggcgctcc cgacgttgac aaccagtgag tgtccatagt gtgcgtatga
     3721 tgtttttaaa agatcgtcat actttctgtt ctgcatcaat tttttcatta caaatgctcg
     3781 ccataatgcc gtcctcagga ggtctcccga cgtttatgct gcgccgggag aaacaaaaac
     3841 aacgcataat ctgggacaaa ttgatgatta aaggcaaact ggcgctcgtg acgtgcgcgc
     3901 tgactctggt attcacttcg tcgcttttcg ccgcgtcgga cacggcagat ggtcgtaccc
     3961 tgaagctggc cattggccct gagccaacgg aaggctttga tcccatgctg ggctggagcc
     4021 acggcagcta cttattgctt catgcgccgt tgcttaagca aaacgccgat atgagttggg
     4081 gtgatttact gacggaaaaa gtggatacca gccccgacgg taaaatctgg acgctaacct
     4141 taaagcccgg gctgaaattc tccgatggct cgccattaac tgccgaagat gtcgttttta
     4201 catacaataa agcggcgaag agcggcggta aaattgacat gggcaatttt agccatgcgc
     4261 gagcgctgga tgcgcgccga attgagatga cgctgagcca tccgcagagc acctttgtga
     4321 atgtactcgg gtcgttaggg attgttccgg ccagccgtta tgatgaaaaa acgttcgccc
     4381 gcgaaccgat aggcgccggt ccataccgac tggtcagctt tcagccgggt cagcaactga
     4441 tcgttgaagc taatccctgg tatgcgggta aaaagaatga ctttaaccgg ctggtttttg
     4501 tctttctgga tgaagataat gcttatgccg ccgcgcgcag cggacagttg ggactggtgc
     4561 gcattgcccc ttctatggcg gtgaccccgc agcaggataa tcttaaactc tgggtacgcg
     4621 atagcgttga aaaccggggc attgtcttcc cgatggtgcc tgccggtaaa aaggatgcta
     4681 acggttatcc tgtcggcaac gatgtgaccg ctgatgtcgc tatcagacgc gcaattaact
     4741 atgccattaa tcgtaagcaa ctggcggaac aggtgatgga aggccatgcg atacccgcct
     4801 atagcgcggt gcagggatta ccgtggcaaa atccttcagt ggtattcagc gatggcgata
     4861 ttgcaaaagc gcgcgccatc ctggaagagg ctggctggaa gataaacagt gcgggcgtgc
     4921 gtgaaaaagc aggtaaagaa gcgcgtctga ccttatggta tgccagtggc gacagcaccc
     4981 gacgggatct ggccgaggcg gtgcgcgcca tgttgcagcg tttaggcatt gtcgtctcgt
     5041 tgcaatcggg aagctgggaa actgtagagc gccatatgca cgctaaccct acgctgtttg
     5101 gctggggaag tctggacccg atggaactct tccatcacta cagtgggaaa gccgctggtg
     5161 tggaatatta taacccgggc tattacagca accctgcggt agaagcacat ctgaagcagg
     5221 ctatagatgc gcctgactgg caaaaggcga tccctttctg gcagcaggtt gagtgggatg
     5281 ggaagcaggg cgcgggcgtc cagggcgatg cggcatgggc atggctgctt aatattcagc
     5341 atacttatct ggccaacccc tgtattgatc tgggaaaagg ctcgccagaa atccacggta
     5401 gctggtcggt gttaaacaat cttgatgact ggacctggac ctgtcggtga tgaaattgtt
     5461 cttcagtcat tttttgcggc tgattattct gttggtgctg gtggctgccg gcaccttcat
     5521 tttgcttagc ttttcgcccg ttgatcctat ccgtgcttat attggcaacg atctgctcca
     5581 tgttccgcca gaacaatatg cgcggattgc ggcgcgctgg gggcttgacc agccgctgtg
     5641 ggagcgtttc ggtcactggt tttggcgtct gctccagggc gacatggggt attccatgct
     5701 gttcaacatg cctgtcgcca gcgtgatccg ggaacgtttt gcgacgtcat tcgcgctgct
     5761 ggcaggcgcc tggctattgt ctggtgtgct gggcgtaaca ttgggttttc tggccggacg
     5821 ttttctccac cgttggccgg ataagatgat ttgccgtatc agctacttat tgtcatcgtt
     5881 gcccactttc tggatagcaa tgctgttgct ggcgctgttt gccgtccgct ggccggtatt
     5941 acctgtttgt tgcgcctggg accccggaaa taatgcagga acagctcttt tatcggaacg
     6001 tttacgccat cttgtgttgc cggtatgtgc gttaagtctg ttgggcatgg ggcaaattgc
     6061 gctgcatacg cgagaaaaaa tagccagcgt aatgaagagc gaatttattc gttttgcgcg
     6121 cgctcagggg gataaaggat ggtcgctgtt acgtcaccag gtgttacgtc atgcgattac
     6181 cccagcgctc tgcttacagt ttgcttctct gggtgaactg atggggggag cgttactggc
     6241 agaaaaagtc tttgcgtatc cggggctggg acaggccact atcgatgccg gcctgcgtgg
     6301 cgatgtcccg ctactcatgg ggatcgtttt attctgtacg ctattagtgt ttgccggaaa
     6361 tacgatttca gcctggcttg tggtggtgct taatcgatcg ctggagcgtc ccgatgctct
     6421 ataatcctgc cccgacgttg tttcgtctgc tcctctccgt tacctgtctg ctgtttattg
     6481 ccggatacgg ttatgccacg ttgagccagc cgccagaggt taatctgctt gcccggcatc
     6541 tgtcgcctga tatccagcac tggtttggca ccgataatct ggggcgcgat gtatggcttc
     6601 gttgctttca gggggccttc accagtttac aaattggcgt tggcgccgcg ctgtgcagcg
     6661 gcgttatcgc gttagtgatg gcggcagtgg cgcgcattca tccccggctg gacctcctgg
     6721 tgcggctgat aaccgatgct atgctcgcca tgccgcattt acttttgctg atccttatct
     6781 gttttacgct cggcggcggt aaaagcggcg tcattgcggc cgtggcgtta acgcactggc
     6841 cccgtctggc gctgattctg cgcgccgacg cggagcgggt agcgcagagt gactacctga
     6901 cattgaccta tcgtctgggg catggacacc tttattgctg gcgatatcac tattttccgg
     6961 cgctattgcc gcaatggttg acgggaacgt tattgatgtt tcctcatgcg gtattgcaca
     7021 gcgcggcgtt aagttttctg gggtttgggc tggcgccgca tgagccttcg ctggggctgt
     7081 tgctggcgga tgcgttacgg tttattagcc atggaaactg gtggctggtg ctatttcccg
     7141 gcctaatgtt attcacgctg gtgatgctct tcgatcagtt tgcgcgcgcc attcagcggc
     7201 tgtggctaag gagtgacgta tgctgagttt acaacgggtt acgctggaaa gcgcgcgtta
     7261 tcgctggtat ggcgcgagac gctggtcgcc gttattacag aatgtctctt ttgatatcgc
     7321 gcccggcgaa atggtggcat tggttggcgg cagcggggag ggaaaaagtc tgctgctgca
     7381 atgcctgctc gatctgctgc cggaaaactt acgttttcgg ggtgagatta cgcttgatgg
     7441 caaccggctg gacagacata ccatcaggca gcttaggggc aatacgttta gctacgtgcc
     7501 gcagggggta caggcgctta atcctatgct gaatatcaga aaacatttga acagagcatg
     7561 tcatctgacc ggacgcgcct gggatgagac gcagatggta cagttattac agcaaagcga
     7621 tcttgcaccg acagtcctgg aacgctttcc ccgccagctc tccggtggga tggctaaacg
     7681 aattctggcg tgccacgcct cgctcagcca ggcacgttat atcctcgcgg atgagatcac
     7741 cgcctggctt gatacggcac tggcaaacca gttgcttgag cacttgcgag gtctctgcga
     7801 gcggggatgc ggcgtgctgt gggtgactca tgacctgctg ctggcggcgc ggtatgccga
     7861 tcgcattgtg gcgctgcatc agggttatat cacggacaat attcgctgtg aacgattaca
     7921 gccggaagag atgagtgagc cgttaaaacg gcaatggcag gcattgcctg aactaaaccc
     7981 gttatttatg ccgaccggag agggaataga atgctgagct gccgcgacct cgttattcgt
     8041 cagggcggga aagtcttatg gcagaacctg acgtttacga tttctgccgg tgaacgggta
     8101 ggaattcatg cgccaagcgg aacggggaaa acaacgttgg ggcgcgtcct ggccggatgg
     8161 caaaagccga cgacgggcga cgttctgctg gacggcagcc cgttacccct gcatcagtat
     8221 tgcccggtac agctggtccc ccagcatcct gaactgacgt ttaatccctg gcgaagcgcc
     8281 ggagacgctg tgcgtgatgc ctggcagcct gacccggaaa cgttgagacg tttgtatgtg
     8341 cagcccgagt ggctgacgcg tcggccaatg cagctctcag gcggggagtt ggcgcgtatt
     8401 gcgatactac gcgcgcttga cccgcgagcg cgttttctga ttgccgacga aatgacggcg
     8461 caactcgatc cgtctattca aaaagcgata tgggtatacg tgcttgaggt gtgccgcagc
     8521 cgttcattag ggatgttggt gattaatcat cagtctgcgc tacttgatca agtctgtacc
     8581 cgccatttac aggtggaata gccgcaagtc gtttctccgc attgtcgtgt cgccgttaac
     8641 gcaccgggag cccatgggtt cccggtattg tcggcagaga ttttactgca tgacgcgttt
     8701 atctgcgttt tttgcatcag cggtattact gtagtccctg gtctcttcaa cctgtacagg
     8761 ggctctgacg accagacttg gcagcgccag ttcgatatca ttctcaatga gtttttcaat
     8821 aatacggata tttatctctt gctgaatatc catgtattta ttgtaatccg cggtattgac
     8881 gatatgtacc acctcatagg tcagccgatc ctgaccaaag gccagtagat gggcgcggtc
     8941 gaattgtgtt tcgccgacat cggtaataat ctttttcacc atatcgccga tgaggcgtaa
     9001 cttttccggc ggtgtcgcag tggcaacgcc aaaagtaaac acgatacgac gcgtttgcat
     9061 ccgcttatag ttgtgtatgg tttgctgcaa caactgcgcg ttcgcacaaa cgatctgttc
     9121 gccgctgagg ctacggatgc gagtggtttt caaaccgata tgttcaatcg taccggctac
     9181 atcattaaag acgacgaaat cgccgatctc gaagggctta tcgaaaccaa tcgacagcga
     9241 agcgaagaca tcgctcagaa cggtttgtac cgccagggca atagcaatac cgcccacgcc
     9301 gaggctggct accagtgcgg taatatccac gccgacgttc gccaggatgg agagcaacat
     9361 catagaccag acgagcacgc gcaaaatcat accaagaatg actaacgtca ccgggttttt
     9421 attggagcct ggggcataca gtaaatgacg catccatgac tgtacgccct gatcaagcca
     9481 aatcgccatt tgaatcgcaa ccactaaaaa ccaggcgtga gagagggtag agaataaccg
     9541 gtcgggcagg gcgacaaagc gcaggctaaa gagaaatgcg gcaaaaaaga tgagcatctt
     9601 actggtcttt ttcagcatct cgaaaacaat aggccgcagc cgcccatgag catcatcctt
     9661 tttatccggg cgttgtagcg ctttatagac cacattaagt agccagttga tgagccagta
     9721 agtaatgagg gtgacgaaaa aaacgaccgc cagattgatc cagaacgtcg ttgacatcag
     9781 catcgcaacg atatttagtc gtgctaaata ctccatttta cctccgatga aaagcagatg
     9841 aacattacag tatagacgtc acatcacgga ggccgatttc cggctttact attgctgttt
     9901 tattcagcac ttttgttcaa aaagcatgaa aaagaggggt agccgtttgg ctatcccggc
     9961 gtttctgtgc agacttatct actcctctta ataaaataag gagtcattta tgcaacaaga
    10021 acatcgagag tgtattgagc agtgttatga atgcgcggcg gcgtgtgata tctgcgcctc
    10081 ttcttgtctg cgtgaagata acgtcgaaat gatgaagcat tgcatcgagt tagatatgca
    10141 atgtgcggcc atttgtcgcc tggcggcgca atttatggca ttggaaagcg agtactcaca
    10201 aaaattatgc cgcctgtgcg cggatatctg caaagcctgc gccgaagagt gtgcaaggca
    10261 cgatcacgac cattgccaga attgcgcgcg ggcatgcagc caatgcgcag acgcctgcct
    10321 taaaatggcc gcgtaatttt tcttccgcca ttagctcaac cggatagagc atagagcttc
    10381 tacctctaag gttcggggtt caattcctcg atggcggacc agttgatatc aaaaaaggcc
    10441 acctgcgcgg tggccgctga gtttctgttg aaataaatgc aatgttataa tataacaatc
    10501 atctttctaa gaaagatgag ggtaacgttt tggtgattca tttaaaaaaa ctgacaatgc
    10561 ttctgggaat gctgttggtc aatagtcctg ccttcgcgca tggtcatcat gctcatggcg
    10621 cgccgatgac ggaggttgag caaaaagcgg cagcgggtgt gtttgatgac gctaatgtac
    10681 gcgatcgcgc gctcaccgac tgggatggta tgtggcaatc cgtctatcct tatctggtca
    10741 gcggcgagct ggaccctgtc ttcagacaaa aggcgaagaa agacccggag aaaacgtttg
    10801 aggatattaa agcgtattat cgcaaaggat acgcgacgaa tgttgagact atcggtattg
    10861 aaaatggcgt tatagaattc catcgcgaca ataacgttgc atcctgtaaa tacaattatg
    10921 ccggctataa aattctgact tacgcatcgg gtaaaaaagg ggtgcgctac ctgttcgaat
    10981 gtaaagatgc gaatagcaaa gcgcctaaat atgttcagtt tagcgatcat atcattgccc
    11041 cgcgcaaatc ggcgcacttc catatcttta tgggaaatac ctcgcaacag gcattgttgc
    11101 aagagatgga aaactggcct acctattatc cttatcagtt aaaggcgaat gaggtcgttg
    11161 acgaaatgct acatcattaa gtctgattgc aatgttaaaa gctcgctatg aatagcgagc
    11221 tttttttctg ccgttatgcc atatttctgg caatcaatat aaaaaatacc tgcgcccccg
    11281 gagcaacgat gacgctgtcc ataccgccct cgattcaatg ccaaacggaa gcggcgtgtc
    11341 gcctgattac tcgtgtcaca ggcgatacgt tgcgtgctat tcatttatat ggttccgctg
    11401 tcgcgggcga tctgaagcca aacagcgaca ttgatctgct ggtgacaata tgccagccgc
    11461 tgacggagac ccaacgcgca acgctgatgc aggaattgct ggcgctttca tcgccgccgg
    11521 gggcgtcagc agaaaaacgc gctctggagg tcactgtcgt gctttattcg cagctggttc
    11581 cctggtgttt tccaccttcc cgggaaatgc aatttggcga gtggctaaga gaggacattt
    11641 atcaggggat ttatgaacca gcgcagcagg actgggacat ggtgttactg ataacccaaa
    11701 ttctggaaac cagtataccg ctaaagggag aacgcgcgga acggctgttc acgccagccc
    11761 ctgcggcgca gttgctgaag gccttgcgtt atcccctcga cctttggcaa tccacggcag
    11821 atgtgcaggg agatgagtat catatcgttt taaccctggc gcgtatctgg tacacccttt
    11881 ctaccgggag atttacctct aaggatgcgg cggctgactg gctgttacct cagttgccag
    11941 aagagtatgc tgctacgttg cgtgcggcgc agcgtgaata tttaggtctg gagcaacagg
    12001 actggcatat tttgctgcct gcggtcgtac gctttgtgga ttttgcgaaa gcgtacatcc
    12061 ccacgcagtt cacataagat gccccaggac gtctgtcagg ttgcgcaaac ggcgttcctc
    12121 aactactact taataggttc tcatcgctga agtaagcaga tgatcttatg cgggccatcg
    12181 aatggatatt cccacatggc tctcgttttg ttgaggtgga tatgactggt tccgcatcat
    12241 ctgttttaaa gacagataca agactattga gcgaaaacct gtttcttaat tatggtctgg
    12301 agtccttatt taaggacgtc gcaataatag ctggcaacgt aaattatatt gtttttgata
    12361 tcgacgatta ctacaccgta cagcagtata ttacttccac atttaaaacg gtactcattg
    12421 ggattgttac ccataatgaa tataacttta ttgatgaaca tcatgctata tatcgaataa
    12481 aggtcgatgc ctctattgct gagtggcgcg aattactgat tttggccgct gctggtcaat
    12541 tttttcccag atcagagaaa gtcagattaa cggcgaatga aagaaatgtt ttggcgatgc
    12601 ttgttaaagg aatggatatc cgacaaataa gctgtgagct gaatgtacat ttaaaaacta
    12661 tttactcagt acgctaccat gtcctgacta aattaggttg tagaacagtt ctggattatc
    12721 aaatactgtc cgtctctaaa gcctttacgc actggcttac aataaataat gtcgataatg
    12781 taattttccg tgtaaatagc aaggtcattg cttaataatg atttgcttct gatggcgttt
    12841 aggttcacta tgctttctta catcatcatg aggccagaca ggcatggcta cttttagtat
    12901 tagcgcaatg gcggcgcagt gtggtgtcac aacagcaaat atcaggtcct gggaacgcta
    12961 tggcctgctt caacctacca aagatgaagc tggcaatcgt ttttattgca tagaagatgc
    13021 tatcagaata cagcatatta tcgacgcgtt aagcaaaggc ttctcattaa aagagattaa
    13081 acctgccctc tatggtgaag aaacgcattg ccgctcggga tggttattct accaggaaga
    13141 gattttagcg cagtgtagaa aattcgaacc cgccaaattg cgaaaattac tctggcgtta
    13201 tggtcgggaa attccgccgt gtatcgtaat tgagtcaata ctgcgtcctt tatggctgtg
    13261 gttgtccgca ggcgatgatg atgcacgccg atttgaaaag gcattactgg atactgcgat
    13321 tattgaatac gccacgttcc agctaagtag cgtacgaaag gcgccagcag gcacaatgct
    13381 tattgctgcg ttttcgctga acgaccccat tgagctatgg ctggaaacga ttaaatattg
    13441 tagtgaaggt atgcgagttg aagtcatccc ctggcaggcg ccgatgcccg atcttttatc
    13501 aacgtctttc gagcatattg ttttgtggca tgatgagaca ttaactcccg cccaggaaaa
    13561 tcttattcag gctttaaaag aatcgggtaa atttagtctt catgtgaaaa atggctcagg
    13621 cttaacatta ctgccagccg tataccggca gcatgagatg cccgaaagca tgcagcatgt
    13681 tgcaccgcaa atccatgcaa acggctacga aaaatcaggc accgcacgtt gaggcatctg
    13741 cattattaac gaacagggga ggagtaaccc cctcccttgt ttataccctt catacttcaa
    13801 gttgcttatg tgttggctac ggattactcg gcccatccat aggcctcgcc ctgacgggcc
    13861 gtcgcaagcg acgttcaaat ctgctcccgg cagatttgtc gttcacccca gtcacatagt
    13921 tatctatgct cctggggact cactcccttg ccgcctttta gcaacacgaa ttattttggg
    13981 tatatattag atgtcgtcag gtgtctgaaa aaaaacggct tctaaggcat tgcggtaaat
    14041 atcaagctgc actacgtctt tttctgtttc cagtttttca ataagtttgg cgatgatatc
    14101 cttatttgag acatgctgct gcgattgcaa tagttcgtaa gtaatttcct gaatagctcg
    14161 ctgttcacat aacatatgtg cagaaaaagg attgccagta ctattttgtt cgttgactag
    14221 tgtaatggta gtcatatttc accatattcg atgtaaattg aagccgatct ccctgagcgg
    14281 ggg
//
LOCUS       DAJVSD010000101        14236 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.101, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000101 DAJVSD010000000
VERSION     DAJVSD010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 14236)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14236)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14236
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.101"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            38..2442
                     /locus_tag="OQP62_002449"
                     /pseudo
     CDS             38..2442
                     /locus_tag="OQP62_002449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461465.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
     gene            2439..3068
                     /gene="dmsB"
                     /locus_tag="OQP62_002450"
     CDS             2439..3068
                     /gene="dmsB"
                     /locus_tag="OQP62_002450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
                     /protein_id="HCS1721979.1"
                     /translation="MSQFTHYPPVSDKQLGFFIDSSRCSGCKACQVACKDKNNLEVGR
                     RFRRVYEVKGGSFIPTGQGRVSNNVFAYTLSISCNHCADPVCTKNCPTTAMHKRPGDG
                     IVRVDTDKCVGCGYCAWSCPYGAPQLNEQTGQMSKCDMCVDLLAKGESPGCVATCPLE
                     AIKFGPIDELRAKYGSVCDVNGLPDSSITKPNLVVKAHQGAEKEGKRHA"
     gene            3061..3870
                     /locus_tag="OQP62_002451"
     CDS             3061..3870
                     /locus_tag="OQP62_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461463.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit
                     family protein"
                     /protein_id="HCS1721980.1"
                     /translation="MHELPLLIFTLCLQGSVGVTLWLALGRQYAVEGRVPARGALPAM
                     AGAFVLACVGLLASALHMGYPLNALNALRHVASSWLSREIVFASLYLAALGLGVVLLF
                     FRKPGWQPLLALAAAFGLVDVFCMAQVYIHASVATWQHSNTLALFFGTSGIIGSVVIA
                     LAYLRNAGAAMRCAVVVVALMVLIRLIMQPLWLADINAVDTTVVTFPHHPLQALAQLR
                     DIYLLGWCVSAAGMLCFAAGGLRNARGTLVAGSVLLLIGEIMLRYVFFSIG"
     gene            3870..4733
                     /locus_tag="OQP62_002452"
     CDS             3870..4733
                     /locus_tag="OQP62_002452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HCS1721981.1"
                     /translation="MVNLTIDPAVDVTQACVRRRFRFSSCRACTDVCPAQVFSLAQGQ
                     VSIDTTRCIACGDCLFVCPVDAITDIKPVKRFVQGDTLVGPFSLQAPTVDELLLWHSQ
                     YGIRFIDIAVERSAQWLMALAGLNLALRRYGEPGWSFKHVVGAEINASRRTLFHVPRD
                     AITPCAVEPGKRRLRQAFSAFSECVPEISPQECRMCGACWRSCPENVIQFDDDTLTIA
                     AARCTGCGGCAAVCPHQALRLRFDVEPASTRHSAVHTLTCESCKRTFHALTPEHTHCV
                     LCQSPEFAVRL"
     gene            4854..5285
                     /gene="ndk"
                     /locus_tag="OQP62_002453"
     CDS             4854..5285
                     /gene="ndk"
                     /locus_tag="OQP62_002453"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000963848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HCS1721982.1"
                     /translation="MAIERTFSIIKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTV
                     EQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGT
                     LRADYADSLTENGTHGSDSLESAQREIAFFFGEGEVCPRTR"
     gene            5492..6658
                     /gene="trmG/rlmN"
                     /locus_tag="OQP62_002454"
     CDS             5492..6658
                     /gene="trmG/rlmN"
                     /locus_tag="OQP62_002454"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA
                     large subunit methyltransferase RlmN"
                     /protein_id="HCS1721983.1"
                     /translation="MSEQIVTPESSTPVVLNNETKINLLDLNRQQMREFFKNLGEKPF
                     RADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIA
                     VGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAA
                     KIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSG
                     VVPALDKLGDMIDVALAISLHAPNDTIRDEIVLINKKYNIETFLGAVRRYLEKSNANQ
                     GRVTIEYVMLDHVNDGTEHAHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRF
                     SKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEVIDIKAI"
     gene            6952..7926
                     /gene="rodZ"
                     /locus_tag="OQP62_002455"
     CDS             6952..7926
                     /gene="rodZ"
                     /locus_tag="OQP62_002455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoskeleton protein RodZ"
                     /protein_id="HCS1721984.1"
                     /translation="MNTEATHDQNEAQTTGVRLRNAREQLGLSQQAVAERLCLKVSTV
                     RDIEEDKAPSDLASTFLRGYIRSYARLVHVPEEELLPGLEKQAPLRAAKVAPMQSFSL
                     GKRRKKRDGWLMSFTWLVLFVVVGLTGAWWWQNHKAQQEEITTMADQSTAELNADKDS
                     GQSVPLDTSAATSQDTTPAQTAPAPATPVDSTAATQNTVVAPSQANVDTAATSAAPAA
                     TETPSALPTSQAGVAAPAADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLT
                     GQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEPTPAQ"
     gene            7953..9071
                     /gene="ispG"
                     /locus_tag="OQP62_002456"
                     /gene_synonym="gcpE"
     CDS             7953..9071
                     /gene="ispG"
                     /locus_tag="OQP62_002456"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HCS1721985.1"
                     /translation="MHNQAPIQRRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEAT
                     VNQIKALERVGADIVRVSVPTMDAAEAFKLIKQQVSVPLVADIHFDYRIALKVAEYGV
                     DCLRINPGNIGNEERIRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLES
                     AMRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARSGAV
                     KSAIGLGLLLSEGIGDTLRVSLAADPVEEIKVGFDILKSLRIRARGINFIACPTCSRQ
                     EFDVIGTVNALEQRLEDIITPMDVSIIGCVVNGPGEALVSTLGVTGGNKKSGLYEDGV
                     RKDRLDNDDMIAQLESRIRAKVSQLDEARRIDVLQVEK"
     gene            9182..10456
                     /gene="hisS"
                     /locus_tag="OQP62_002457"
     CDS             9182..10456
                     /gene="hisS"
                     /locus_tag="OQP62_002457"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HCS1721986.1"
                     /translation="MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLP
                     IVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE
                     QRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGISEH
                     VSLELNSIGSLEARANYRDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQAL
                     LNDAPVLGDYLDDDSREHFAGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSL
                     GSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFIASPVVDIYLV
                     AAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEV
                     ADGTVVVKDLRSGEQTAVAQDSVAAHLRTLLG"
     gene            10470..11090
                     /locus_tag="OQP62_002458"
     CDS             10470..11090
                     /locus_tag="OQP62_002458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfgM family protein"
                     /protein_id="HCS1721987.1"
                     /translation="MEIYENEHDQVDAIKRFFAENGKALAVGVILGVGALVGWRYWSS
                     HQTESARAASLAYQNAVTAVSADKPDSIPAAEKFAAENKNTYGALASMELAQQFVDKN
                     ELKKAEAQLQQGLAATSDENLKAVINLRLARVQLQLKQADAALKTLDAVKGEGWTAIV
                     ADLRGEALLSKGDKKGARSAWEAGVNSDASPALSEMMQMKINNLSI"
     gene            11101..12279
                     /gene="bamB"
                     /locus_tag="OQP62_002459"
     CDS             11101..12279
                     /gene="bamB"
                     /locus_tag="OQP62_002459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamB"
                     /protein_id="HCS1721988.1"
                     /translation="MQLRKLLLPGLLSVTLLSGCSLFSGEEDVVKMSPLPQVENQFTP
                     TTVWSTSVGNGIGEFYSNLHPVMADNVVYAADRAGVVKALNADDGKEIWSVNLGEKDG
                     WFSRSSALLSGGVTVAGGHVYIGSEKAEVYALNTSDGTTAWQTKVAGEALSRPVVSDG
                     IVLIHTSNGQLQALNQADGAIKWTVNLDMPSLSLRGESAPATAFGAAIVGGDNGRVSA
                     VLMQQGQMIWQQRISQATGPTEIDRLSDVDTTPVVVNGVVYALAYNGNLTALDLRSGQ
                     IMWKRELGSVNDFIVDGDRIYLVDQNDRVLALTTDGGVTLWTQSDLLHRLLTSPVLYN
                     GDLVVGDSEGYLHWINVDDGRFVAQQKVDSSGFLTEPTVADGKLLIQAKDGTVYAITR
                     "
     gene            12398..13870
                     /gene="der"
                     /locus_tag="OQP62_002460"
     CDS             12398..13870
                     /gene="der"
                     /locus_tag="OQP62_002460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HCS1721989.1"
                     /translation="MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGR
                     AEVEGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAI
                     AKHLRSREKPTFLVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLL
                     PWMDDVAPQEEVDEDAEYWAQFEAEQNGEEAPEDDFDPQSLPIKLAIVGRPNVGKSTL
                     TNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVI
                     KTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQV
                     KETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAV
                     EDHQPPLVRGRRVKLKYAHTGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMG
                     TPIRIQFKEGENPYANKRNTLTPTQMRKRKRLMKHIKKSK"
     gene            13959..14180
                     /locus_tag="OQP62_002461"
     CDS             13959..14180
                     /locus_tag="OQP62_002461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HCS1721990.1"
                     /translation="MEIICPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQVL
                     KACGAVDYFCQNGHGLISKKRVNFVISDQ"
BASE COUNT         3230 a         3613 c         4169 g         3224 t
ORIGIN      
        1 ataaatatca agagaaccaa cgcataaaaa cgtgagaatg ggtttttatt tgacgagtcg
       61 gatcatgaaa aatataaaaa gccagggaaa tggcgaacag cccgctattt ctcgccgcca
      121 ttttatccag gccagctccg cgcttattga gttaccgttt gtctcctcgc cagctaccgc
      181 tcaggcgcgc gctgtgacgg caactgaaaa caggcctgcg gaaaaagtcg ttcagacatg
      241 cagcactttt gactgcgggg gcaaatgcga tattcgggcg catgtcagtg acggtatcgt
      301 gacgcgaatt tcaacgcgac cggataacgc gctggatgcg caaatgccgg tgatgcgtgc
      361 ctgtgttcgt ggacgagcat accgtaaatt tgtttatcat cctgacagac ttaaatatcc
      421 catgaagcgc gtaggaaaac gcggtgaagg aaagttcgag cgaatttcct gggatgaagc
      481 gacaacctta atcgccgata atttaaaatc gattactgaa aaatatggcc cggcttcgcg
      541 ctatgttcat gttggtaccg ccgtttccgg cggcaccttt tccggcgata aaatggcgcg
      601 tcgcctgctg aatcttaccg gcggctatct cgaaagctac cattcggtga gtatgggcaa
      661 cacggtggcc gcgacgcctt atacttacgg cattgccgcc agcggcagtt cgctggatac
      721 gcttttggac accaaactgg tgattctgtg gggccataac ccgacggaga ccatttttgg
      781 tcataccaac tatttcttgc agaagatgaa gcagaacggt acgcggttta tcgtggttga
      841 tccgcgctat tccgacaccg tttcgtcgct ggcggatcag tggatcccgc tgctgcccac
      901 caccgacaat gcgctgatgg acgcgatgat gtacgtcatc atcagcgaga atctgtacga
      961 tcgtgcattt attgcgcgct acgctatcgg ttttgacgaa gactcaatgc cggaaggcgt
     1021 accggctaac gaatcgctgg tggcatatct gaccggcgcc aaagacggtg tcgttaagtc
     1081 tcccgagtgg gcggaaaaga tcacccatgt gccggcgcaa accattcgcc agttagcgcg
     1141 tgattacgcg aagaccaaac ctgccgcgtt gattcagggg cggggccaca gcgccacaac
     1201 tgcggcgagc gcaccgcgcg cggctcgact ctactggcga ccattaccgg taatgtcggc
     1261 atcaaaggcg gttgggctgc gggttacggc ggctgcgcta accgtaaatt tgccgcgggt
     1321 ccggagatgc cggataaccc ggtaaaagcc aaaatttcgg tgatgaactg ggtgcaggcc
     1381 gcagacgacg ccagcaaagt gacgccggat atggggctga aagatgccga taagctggac
     1441 agtaacatcc gtattctgtt ctcgctggcc gggaactatc tggcgaatca gaaccccgat
     1501 ctgcaccagg cggtacgcgt actggaggat gaatcaaaga tccagtttat tgtcgccagc
     1561 gatctgttta tgacgccgag cgcgaaatac gccgatctac tgctgccgga aaccagcttt
     1621 atggaacgtt ggaacatcgg tgaaacttgg ggcacggcaa gctacctgat actctctgaa
     1681 aaactgatcg agcctgaatt tgagcgtcgc tccgactacg actggctacg tgaggtggcg
     1741 gcgaaattag gcattgagaa tgaatttagc caggggcgcg atgagaaagc gtggattgaa
     1801 cacatctggg aacagacgcg cctggcgatg ccggacgaaa atctgccgga ttttgccaca
     1861 ctgcaaaaga cccgtcagca tctgttcaaa agcgcgccat ttatcgcctt tgaagacaat
     1921 attcgcgatc cggacaatca tccgttcccg acgccgtcag ggaaaataga ggtcttctcg
     1981 aagcgcctgt acgacatgca gcatccggaa atcccggcgt tgtcgcacta cgttcccgcg
     2041 catgaaggcc cggaggatgc gctggtgaaa gattttccgc tccagttaat tacgtggaaa
     2101 ggaaaaaacc gcgccaactc aacgcaatac gctaacccgt ggctgattga agtgcagcag
     2161 cagacattgt ggatcaaccc gcaggatgcg caaacgcgcg gcattacgca tggcgacatg
     2221 gtgcgcattc ataactcacg cggaatttgc gaaatcccgg cggaagtgac gccgcgcatt
     2281 attcccggcg ttgtcgcgat gcaggctggc gcctggtggc agccggatga gaacggtatt
     2341 gataaaggcg gctgcgcgaa cgtcctcagc tcggcccgta ttaccgccct ggcgaaggga
     2401 aattcacatc aaaccatgct ggtggaggtg gcaaaagcat gagccagttt acacattacc
     2461 cgccggtgag cgataaacaa ctgggatttt tcatcgactc ctcacgctgc tccggttgta
     2521 aagcctgcca ggtggcctgc aaagacaaaa acaatctgga agtaggccgt cgtttccgcc
     2581 gcgtctatga agtcaagggc ggaagtttca tcccgaccgg gcagggcagg gtcagcaata
     2641 acgtatttgc ttatacgctt tctatttcct gcaaccactg tgcggatcct gtctgcacca
     2701 aaaattgccc gactaccgct atgcataaac gcccaggtga cggcattgtg cgcgttgata
     2761 ccgacaaatg cgtcggctgt ggctattgcg cctggtcctg cccttatggc gcgccgcagc
     2821 ttaacgagca gaccggccaa atgtccaagt gcgacatgtg cgttgattta ctggcgaaag
     2881 gtgaatcgcc cggctgtgtc gcgacctgtc cgctggaggc catcaagttt ggcccgattg
     2941 atgaactgcg cgcgaagtac ggtagcgtat gcgacgttaa cgggctgcca gattcatcca
     3001 taaccaaacc taatctggtt gtcaaagcgc atcagggcgc agaaaaagag ggtaaacgcc
     3061 atgcatgagt taccgctgct gatttttacg ctctgtttgc aagggtccgt gggcgtgact
     3121 ctgtggctgg cgctgggccg tcagtacgcc gtagagggac gcgtacctgc gcgcggcgcg
     3181 cttcccgcga tggcgggggc gtttgtactg gcctgcgtgg ggctgcttgc ttcagcgctg
     3241 cacatgggct atcccctgaa tgcgctaaac gcgttacgtc atgtcgccag ttcgtggctg
     3301 agtcgcgaaa tcgtctttgc cagcctttat ctggcggcgc tggggctggg ggttgtgctg
     3361 ctgtttttcc gaaagcctgg ctggcagccg ctgctggcgc tggcggcagc gttcgggctg
     3421 gtggatgtat tctgcatggc gcaggtttat atccatgcct cggtggcgac ctggcagcat
     3481 agcaacacgc tggcgctgtt ctttggcacg tcaggcatta tcggctcggt agtcattgcg
     3541 ctggcttatc tgcgcaacgc tggcgccgca atgcgctgcg ctgtggtggt ggtcgcactg
     3601 atggtgctga ttcgcctgat catgcagccg ctatggttgg cggatattaa tgcagtggat
     3661 acgacggtcg tcactttccc gcatcatccg ctacaggcgc tggcgcagtt gcgcgacatc
     3721 tatcttctcg gctggtgtgt ctcagcggcg ggaatgctct gctttgccgc aggcggtctg
     3781 cgaaacgcca gagggacgct ggtggcgggc agcgtattgc tgcttatcgg cgagattatg
     3841 ctgcgctacg tcttctttag tattggctga tggttaacct gacgatcgat ccggcggtag
     3901 acgtgacgca ggcctgcgtc cgtcgtcgct ttcgtttttc ttcctgccgc gcttgcactg
     3961 atgtttgtcc ggcgcaggtg ttttcgctgg cgcaggggca ggtcagcata gatacgacgc
     4021 gctgcatagc ctgtggcgac tgtctgtttg tctgtcctgt tgacgccatt accgatatca
     4081 aaccggttaa acgctttgtg cagggggata cgttggtggg gccgttttcg ctacaggcgc
     4141 caacggtcga tgaactgctt ctctggcaca gccagtacgg tattcgcttt attgatattg
     4201 cggtggagcg atcggcgcag tggctgatgg cgttggcggg gctaaattta gcgctgcgcc
     4261 gctacggcga gccgggctgg tctttcaaac acgttgtcgg cgcggaaatt aatgcctcgc
     4321 ggcgcactct gtttcatgtt ccgcgcgacg ccattacccc gtgcgccgtc gagccgggga
     4381 aacggcgtct cagacaggcg ttttccgcgt tcagcgaatg cgtacccgaa atcagtccgc
     4441 aagagtgcag gatgtgcggc gcctgctggc gaagctgccc ggaaaacgtt atccagtttg
     4501 acgacgacac gctgacgata gcggcggcgc gttgtacggg atgcggcggc tgtgcggcgg
     4561 tatgtccgca tcaggcgctg cggctgcggt ttgacgtgga acccgcctca acgcggcata
     4621 gtgcggtgca tacgctcacc tgcgaaagct gcaaacgtac tttccatgct ctcacgcctg
     4681 aacacacgca ctgcgtgctg tgtcagtccc ctgagtttgc tgtgcgcctt taacttttgt
     4741 tgctaatgct cattttattt taaaaaaatg ttacctgcat ccataggcaa ttgatgggat
     4801 gctctttata atccgcgcct gacataacaa cagaacatat ttcagaggta aacatggcta
     4861 ttgaacggac tttttccatc attaaaccca acgcggtggc aaaaaacgtt attggcagca
     4921 tctttgcgcg ctttgaagct gcagggttca aaattgttgg cactaaaatg ctgcacctga
     4981 ccgttgagca ggcgcgcggc ttctatgctg agcacgacgg caagccgttc tttgacggtc
     5041 tggtggagtt catgacctct ggccctatcg tggtatccgt gctggaaagt gaaaatgcgg
     5101 tacagcgtca tcgcgatctg cttggtgcca ccaatccggc gaacgcgttg gcggggacgc
     5161 tgcgtgctga ttacgctgac agcctgaccg aaaatggcac ccacggttcg gattcgctgg
     5221 aatccgcgca gcgcgaaatc gcctttttct tcggtgaagg cgaagtgtgc ccgcgcaccc
     5281 gttaatctcc ttcgtctttc acgctgtaaa tgcgttggcg ataaattatc ggttcaaata
     5341 ttatttttgc taatgccgcg tgcagacgtg gcatccttac gccagaattt gtacaatgca
     5401 gcgcccccgg acgagcagta agcttaccgg ggcgtttctt ttttcaaccc tccaggggcc
     5461 ataacgtgta ataacgaggc cggaatagca tatgtctgaa caaattgtca cacctgaaag
     5521 cagtaccccg gtagttctta acaacgaaac aaaaatcaac ctgctggatc taaaccgtca
     5581 gcagatgcgc gagtttttta aaaacttagg tgaaaaacct ttccgcgccg atcaggtgat
     5641 gaaatggatg tatcactatt gctgcgataa ttttgatgag atgaccgaca tcaacaaagt
     5701 gttgcgcggc aaattaaaag aggtcgcgga aattcgcgcg ccggaggtcg ttgaagagca
     5761 gcgttcttca gacggcacca tcaagtgggc gattgctgtc ggcgatcagc gcgttgaaac
     5821 ggtctacatc ccggaggacg accgcgctac gctgtgtgtc tcttcacagg tagggtgcgc
     5881 gctggagtgc aaattttgtt caactgcgca gcagggcttt aaccgcaacc tgcgcgtatc
     5941 ggaaattatc ggtcaggtct ggcgtgcggc gaaaatcgtc ggcgcggcca aagtcaccgg
     6001 ccagcgtccg atcaccaacg tagtcatgat gggaatgggc gagccattgc ttaacctgac
     6061 caatgtcgta ccggcgatgg aaattatgct cgatgacttt ggtttcggcc tgtccaaacg
     6121 tcgtgtcacg ctctcaacgt ccggcgtggt gcctgcgctg gataaactgg gcgatatgat
     6181 agacgtcgcg ctggctatct ccttacatgc gccgaatgac actattcgcg acgaaatcgt
     6241 cctgatcaac aaaaaatata atatcgaaac gttcctgggc gcggttcgcc gctatctgga
     6301 gaaatccaac gccaatcagg ggcgcgtgac gattgaatac gtgatgcttg accacgttaa
     6361 cgacggcact gaacacgcgc atcaactggc ggagctacta aaagagacgc cttgtaagat
     6421 taatctgatt ccgtggaacc cgttccctgg cgcgccgtat ggccgcagct ctaacagccg
     6481 tatcgatcgc ttttctaaag ttttgatgag ttatggtttc acgaccatcg tacgcaagac
     6541 gcgtggcgat gacattgatg cggcatgcgg acagttggca ggcgatgtga ttgaccggac
     6601 taaacgtact ctgcgtaagc gtatgcaggg agaggtgatt gacatcaagg ctatttgata
     6661 gcagttgcgc cacggggcat tcattatacc gtggcgcaat gtcagttgaa taatgtctgg
     6721 cgttgtactt gtctggtcaa taataacggt gcgtttttgt cgactttaag gcagtatgta
     6781 acgatgcaac aagagtttaa ccttgtgtct taagcggttt tgtcatctgc ggcctgacag
     6841 gcttatactg tctgactaaa ggttaactaa cctgatgttt cgcggtgtgg gcgggcatta
     6901 cggctcgtcg gcgcctgaat cctaatttac acgtacctgt agctgtagcg aatgaatact
     6961 gaagccacgc acgaccaaaa tgaagcacaa accaccggcg ttcgtctgcg caatgcccgt
     7021 gaacaactcg gactcagcca gcaggctgtc gctgagcgac tttgcctgaa ggtttctacg
     7081 gtacgcgata ttgaagaaga taaggcgccg tccgatcttg cttcaacctt cctgcgcgga
     7141 tatatccgct catatgcgcg tctggtgcat gttccagaag aggaactgct gccggggctg
     7201 gaaaaacaag ctccgctgcg cgccgctaaa gtcgccccga tgcagagttt ctcattagga
     7261 aagcgtcgta aaaaacgcga cggctggtta atgtctttta cctggctggt actgtttgtg
     7321 gtcgtagggc tgaccggcgc ctggtggtgg cagaaccaca aggcgcagca ggaagagatc
     7381 acgacaatgg ccgatcaaag cacggctgaa ctgaacgcag ataaagacag cggccaaagc
     7441 gtaccgctgg acaccagtgc cgcgacaagc caggatacga cgccagcgca aacggctccg
     7501 gctcctgcga cgccggttga ttcgacggcg gcaacgcaaa atacggtagt cgcgccttcg
     7561 caggcgaatg tcgatacggc tgcgacatct gccgcgccag cggcaacgga aacgccgtcc
     7621 gcgctgccga ccagtcaggc tggcgtagcg gcgcctgctg ccgatccgaa cgcgctggtg
     7681 atgaatttta ccgctgactg ttggctcgaa gtcactgacg ccacgggtaa aaaactgttt
     7741 agcggtatgc agcgtaaaga tggcaattta aacctaaccg gtcaggcgcc ttataaactt
     7801 aaaattggcg cgccggccgc ggtgcagatc cagtatcaag gaaaacctgt cgatctgagc
     7861 cgctttatca gaactaatca ggttgcgcgt ctgaccctta atgccgaacc gacaccggcg
     7921 cagtaacaga cgggtaacgc gggagatttt tcatgcataa ccaggctccg attcaacgta
     7981 gaaaatcgac acgtatttac gttgggaatg tgccgattgg cgatggcgcc cctatcgccg
     8041 tccagtcgat gactaacacg cgtaccactg acgtggaagc gacggttaat cagatcaaag
     8101 cgctggagcg cgttggcgca gatattgttc gtgtttctgt accgaccatg gacgccgccg
     8161 aagcgttcaa gcttatcaaa cagcaggtta gcgtcccgct ggttgccgat attcacttcg
     8221 actaccgcat tgcgctgaaa gtagcggaat acggcgttga ctgcttgcgt attaaccccg
     8281 gcaatatcgg taacgaagaa cgcattcgca tggtggtgga ctgcgcgcgc gacaaaaaca
     8341 tccctatccg tatcggcgta aatgccggat cgctggaaaa agatctgcag gaaaaatacg
     8401 gagagccgac gccgcaggcg ctgctggaat cagccatgcg ccatgtcgat catctcgatc
     8461 gtctcaactt tgatcagttc aaagtgagcg taaaagcgtc cgatgtattc cttgccgttg
     8521 agtcttatcg tttgttggct aaacagatcg atcagccgct gcatctgggg atcaccgaag
     8581 cgggcggcgc gcgtagcggg gcggttaagt cggcgatcgg tttaggtctg ctgttatcgg
     8641 aaggcatcgg cgacacgctg cgcgtatcgt tggcggccga cccggtggaa gagatcaaag
     8701 tcggtttcga tatcctgaag tcgctgcgta ttcgcgcgcg cggcatcaat ttcatcgcct
     8761 gcccgacctg ttctcgtcag gagttcgacg ttatcggcac ggtgaacgcg ctggagcagc
     8821 gtctggaaga tatcatcacc ccgatggacg tctcgatcat cggttgtgtg gtgaacgggc
     8881 cgggcgaagc gctggtatcg acgctgggcg tgacgggcgg caataagaaa agcggcctgt
     8941 atgaagacgg cgtgcgtaag gacagactcg ataacgacga tatgatcgcg cagcttgaat
     9001 cccgtattcg cgcgaaagta agtcaacttg atgaagcgcg tcggattgac gtgctgcagg
     9061 ttgaaaaata agaacgtgat gggaagcggc gcgcttcccg tgtatgattg aacccgcatg
     9121 gctcccggtt cgttcgggga agcgctgagg gttcattttt atattcagaa agagaataaa
     9181 cgtggcaaaa aacattcaag ccattcgcgg catgaacgat tatctgcctg gcgaaaccgc
     9241 catctggcag cgcattgaag gcacactcaa aaacgtgctc ggcagctacg gttacagtga
     9301 aatccgcttg ccgattgtag agcagacccc gttattcaaa cgcgcgatcg gtgaagttac
     9361 tgacgtggtt gaaaaagaga tgtacacctt tgaggatcgc aacggcgata gcctgacatt
     9421 gcgccctgaa ggtacggcgg gctgtgtacg cgccggcatc gaacatggtc tcctgtacaa
     9481 tcaggaacag cgtttgtggt atatcgggcc gatgttccgt catgagcgtc cgcaaaaagg
     9541 ccgctaccgt cagttccatc agctaggcgc cgaagtcttt ggcttacaag gcccggatat
     9601 cgacgcggaa ctgattatgc tgaccgcacg ctggtggcgc gcgctgggca tctctgaaca
     9661 cgttagcctg gagctgaact ctattggttc cttagaggcg cgtgcgaact atcgcgatgc
     9721 gctggtcgcg ttcctcgaac agcatcaaga gacgctggac gaagactgca aacgccgtat
     9781 gtataccaat ccgctacgcg tgctggattc aaaaaatccg gacgtgcagg cgctgctcaa
     9841 cgacgcgcct gttctcggcg actatctcga tgacgattca cgcgagcact ttgccggcct
     9901 gtgtaaattg ctggacgcgg cggggattgc ctacaccgtc aaccagcgtc tggtacgcgg
     9961 tctggattac tacaaccgca ccgtatttga atgggtaaca aacagtctgg ggtcacaagg
    10021 caccgtctgt gcgggtggtc gttatgatgg tctggtggaa caactgggcg gtcgcgctac
    10081 cccggcagtg ggctttgcga tgggcctgga acgacttgtt ttgttagttc aggcagttaa
    10141 tccggaattt attgcctctc ctgttgtcga tatatacctg gtagctgccg gcgcacaaac
    10201 gcagtctgcg gcaatgacgc tggcggagcg gctgcgcgat gaaatgccag gcgtgaagct
    10261 aatgacaaac cacggcggcg gcaactttaa gaaacagttt gcccgcgccg ataagtgggg
    10321 cgcccgtatt gcactggttc ttggcgaatc tgaagtcgcc gatgggactg ttgtagtgaa
    10381 ggatttgcgc tccggtgagc aaacggcagt ggcgcaggac agcgtcgccg cgcatttgcg
    10441 cactttattg ggctaaggag aaggacagcg tggaaattta cgagaacgaa cacgaccagg
    10501 tggatgcgat taaacgcttc tttgccgaaa acggcaaagc gctggctgtc ggagtgattt
    10561 taggggttgg cgcgctggtt ggctggcgtt actggagcag ccatcagacg gagtccgcgc
    10621 gtgctgcttc tctggcgtat caaaatgcgg tgacggcggt aagcgccgat aagccggata
    10681 gcattcccgc cgctgaaaaa ttcgcggctg agaataaaaa tacctatggt gcgctggcgt
    10741 ctatggaact ggcgcagcag tttgtggata agaatgaact taaaaaagcc gaagcccagt
    10801 tgcagcaggg gttggcggcc accagcgatg aaaatctcaa agcggtgatt aatctgcgtc
    10861 tcgctcgcgt tcagttacag cttaagcaag ctgacgccgc gctgaaaact ctggatgccg
    10921 ttaaaggcga aggatggacg gcaattgtcg ctgatttgcg cggcgaagcg ttgctgagta
    10981 agggtgataa aaaaggcgcg cgcagcgcat gggaagcggg cgtcaatagc gatgcttctc
    11041 cggcgttgag cgaaatgatg cagatgaaaa tcaataattt gtccatctga gagggacccg
    11101 atgcaattgc gtaaattact tctgccaggg ttgctttccg ttaccctgct cagcggctgt
    11161 tcactgttta gcggcgaaga agatgtcgtc aagatgtctc cattaccgca ggttgaaaac
    11221 cagtttaccc cgaccactgt ctggagcacc tctgtcggta acggaattgg tgaattttat
    11281 tctaaccttc atccggtaat ggcagataac gtggtctatg cagccgatcg cgcgggcgtg
    11341 gtaaaagcgc tcaatgcgga tgatggcaaa gagatctggt ctgtgaatct gggcgagaaa
    11401 gacggctggt tctctcgttc gtccgcgctg ttgtccggcg gcgtcactgt cgcgggcggt
    11461 cacgtctata tcggcagtga aaaggccgag gtttatgcgc tgaataccag cgacggtacc
    11521 acagcatggc agacgaaggt cgcaggcgaa gcgttgtctc gcccggttgt cagtgatgga
    11581 atcgtcctta tccataccag caacggtcag ttgcaggcgc taaatcaggc ggatggcgcc
    11641 attaaatgga cggtgaacct ggatatgcct tcgctgtcgc tgcgcggcga atctgcgccg
    11701 gcaaccgcgt tcggcgcggc tatcgttggt ggtgataatg gccgcgtcag cgccgtgttg
    11761 atgcaacaag ggcagatgat ttggcagcag cgtatctccc aggccactgg cccaacggaa
    11821 attgaccgtc tgagcgacgt cgataccacg ccggttgtgg taaacggcgt cgtttacgcg
    11881 ttggcgtata atggtaactt aacggcgctg gatctgcgca gtggtcagat tatgtggaaa
    11941 cgcgagctgg ggtcggtcaa tgactttatc gtcgacggcg accgtatcta cctggtcgat
    12001 cagaacgatc gtgtgctggc gctgaccact gacggcggcg taacgctgtg gacgcaaagc
    12061 gatctgctgc accgtttgct gacctccccg gtactgtata atggtgattt agtcgtcggc
    12121 gatagcgaag gttatctgca ctggattaat gtcgatgacg ggcgttttgt ggcccaacaa
    12181 aaagtagaca gttccggttt tctgaccgaa ccgacggtgg cggatggtaa actgctcatc
    12241 caggccaaag acggtacggt ctacgcgatt acgcgttaat cgtcacggtt gtgcgtttga
    12301 aaaaacggct cctggtgtag gggccgtttt cctgttttta acaacggcgt aaaaatgacg
    12361 cgcgttgtct gatgattttt taaatgaggc tttaaacatg gtacctgtgg tcgcgcttgt
    12421 cgggcgccct aacgtcggaa aatccacgct atttaaccgt ctgacccgca cccgagatgc
    12481 gttggttgcg gatttcccgg gtctgactcg tgaccgtaag tacggtcgtg cggaggttga
    12541 aggccgcgag tttatctgta tcgacaccgg cggtattgac ggcaccgaag acggcgtcga
    12601 aacgcggatg gcggaacagt cgctgctggc gattgaagaa gcggatgtgg tgttattcat
    12661 ggtagatgcg cgcgctggtc tgatgccggc ggatgaagcg attgccaaac atctgcgctc
    12721 ccgtgaaaaa ccgaccttcc tggtggcgaa taaaacggat ggtctcgatc ccgatcaggc
    12781 ggttgtcgat ttttactcgc tgggattagg cgaaatttat cctatcgccg cctcacatgg
    12841 tcgcggcgta ttgagcctgc tggaacatgt gcttctgccg tggatggatg atgtcgcacc
    12901 gcaggaagaa gtggatgaag acgcggaata ctgggcgcag ttcgaggcgg aacaaaatgg
    12961 cgaagaagcg ccggaagatg attttgaccc gcaaagcctg ccgataaagc tagcgattgt
    13021 cggtcgcccg aacgtaggta agtccacact cactaaccgt attctcggcg aagagcgcgt
    13081 ggtggtatac gacatgccgg gcaccactcg cgacagtatt tatatcccga tggaacgcga
    13141 cgaacgggaa tatgtgctga ttgacacggc gggggtgcgt aagcgcggaa aaatcaccga
    13201 tgcggtagaa aagttctcgg tgattaaaac gttacaggcg attgaagacg ctaacgtcgt
    13261 actgttggtt atcgatgcgc gcgaggggat ctctgaccag gatttgtctc tgctgggctt
    13321 tatcctcaat agtgggcgct cactcgttat cgtagtcaac aaatgggatg gcctgagcca
    13381 ggaagtcaaa gagcaggtga aagagacgct ggatttccgt ctgggcttta ttgattttgc
    13441 ccgcgtgcac tttatctctg cgctgcacgg cagcggtgtc gggaacctgt ttgagtccgt
    13501 acgcgaggct tacgacagtt ccactcgccg ggtgagcact gcgatgctga cccgtatcat
    13561 gacgatggcg gtggaagatc atcagccgcc gctagtgcgc ggtcgccgtg tgaagctgaa
    13621 atatgcccac actggcggct ataacccgcc gattgtggtt attcacggca accaggtaaa
    13681 agatctgcca gactcctata agcgctatct gatgaactac ttccgcaagt cgttggaagt
    13741 gatgggtacg ccgattcgca ttcagtttaa agaaggggag aacccgtatg cgaacaagcg
    13801 taacacactg acgccaacgc aaatgcgcaa acgtaagcgt ctgatgaagc atatcaagaa
    13861 aagcaagtaa tgctttttca gtaatattcc aggcctgata agcgcagcgc tatcaggcct
    13921 ttcaagtaaa agcgagtcac gcgcctgagg agaatgttat ggaaataatc tgccctgttt
    13981 gccatcatgc gctggagcgc aatggcgata cagcccattg cgagacatgc gctaaggatt
    14041 tctcgttaca ggcactttgt cctgactgcc gccagccgtt acaggttttg aaagcctgcg
    14101 gcgcagtgga ctatttttgc cagaacggtc atggtttaat ttcaaaaaaa cgggttaatt
    14161 tcgtcatttc cgatcaataa aaccactgtc gacgttgcgt cgcagagcag aggcgccgac
    14221 gtcttatccg gctaag
//
LOCUS       DAJVSD010000102        14164 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.102, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000102 DAJVSD010000000
VERSION     DAJVSD010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 14164)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14164)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14164
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.102"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(80..562)
                     /gene="smpB"
                     /locus_tag="OQP62_002462"
     CDS             complement(80..562)
                     /gene="smpB"
                     /locus_tag="OQP62_002462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HCS1721991.1"
                     /translation="MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSL
                     RAGKANIGDSYVILKDGEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYG
                     RINREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKNAGR
                     "
     gene            751..1188
                     /locus_tag="OQP62_002463"
     CDS             751..1188
                     /locus_tag="OQP62_002463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001543334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HCS1721992.1"
                     /translation="MPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCVGSRVLESSP
                     AQMTAAVDVSKAGISKTFTTRNQLTRNQSILMHLVDGPFKKLIGGWKFTPLSPEACRI
                     EFQLDFEFTNKLIELAFGRIFKELASNMVQAFTVRAKEVYRAG"
     gene            1178..1468
                     /locus_tag="OQP62_002464"
     CDS             1178..1468
                     /locus_tag="OQP62_002464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HCS1721993.1"
                     /translation="MPDKLVVEVAYALPEKQYLQRVTLEEGATVEEAIRASGLLELRT
                     DIDLAKNKVGIYSRPVKLTDTVQDGDRVEIYRPLIADPKALRRQRAEKSAGR"
     gene            complement(1634..1972)
                     /gene="bamE"
                     /locus_tag="OQP62_002465"
     CDS             complement(1634..1972)
                     /gene="bamE"
                     /locus_tag="OQP62_002465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HCS1721994.1"
                     /translation="MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTPTDVA
                     KVRVGMTQQQVAYALGTPMMTDPFGTNTWFYVFRQQPGHENVTQQTLTLTFNSSGVLT
                     NIDNKPALTK"
     gene            complement(2121..3782)
                     /gene="recN"
                     /locus_tag="OQP62_002466"
     CDS             complement(2121..3782)
                     /gene="recN"
                     /locus_tag="OQP62_002466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HCS1721995.1"
                     /translation="MLAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGL
                     CLGGRAEADMVRTGATRADLCARFALKDTPAALRWLEENQLEEGRECLLRRVISSDGR
                     SRGFINGTAVPLSQLRELGQLLIQIHGQHTHQQLTKPEQQKSLLDSYANEAALAQQMA
                     AHYQLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNDFNPQAGEFEQIDEEYKRLA
                     NSGQLLTTSQNALALLADGEDVNLQSQLYSAKQLVSELVGMDSKLSGILDMLEEATIQ
                     LTEASDELRHYCERLDLDPNRLFELEQRIAKQISLARKHHVSPEALPQLYQSLLEEQQ
                     QLDDQADSLETLTLAVNKHHQQALETAQALHQQRQFYAQELGQLITESMHLLSMPHGL
                     FTIDVKFDEHHLSNDGADRVEFKVTTNPGQPLQPIAKVASGGELSRIALAIQVITARK
                     METPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE
                     TDGAMTETHMQPLDKRARLQELARLLGGSEVTRNTLANAKELLAA"
     gene            complement(3868..4746)
                     /gene="nadK"
                     /locus_tag="OQP62_002467"
     CDS             complement(3868..4746)
                     /gene="nadK"
                     /locus_tag="OQP62_002467"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020239499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HCS1721996.1"
                     /translation="MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIA
                     HELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLT
                     DLDPDNALQQLSDVLEGRYISEKRFLLEAQVCQQDRQKRISTAINEVVLHPGKVAHMI
                     EFEVYIDETFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSA
                     RPLVINSSSTIRLRFSHRRSDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYS
                     YFNTLSTKLGWSKKLF"
     gene            4870..5460
                     /gene="grpE"
                     /locus_tag="OQP62_002468"
     CDS             4870..5460
                     /gene="grpE"
                     /locus_tag="OQP62_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HCS1721997.1"
                     /translation="MSSKEQKTPEGQAPEEIIMDQHEEVEAVEPNDSAEQVDPRDEKI
                     ANLEVQLAEAQTRERDTVLRIKAEMENLRRRTEQDIEKAHKFALEKFVNELLPVIDSL
                     DRALEVADKANPDMAAMVEGIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMV
                     ESEEVPAGNVLGIMQKGYTLNGRTIRAAMVTVAKAK"
     gene            complement(5542..6099)
                     /locus_tag="OQP62_002469"
     CDS             complement(5542..6099)
                     /locus_tag="OQP62_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001688360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoplasmic protein"
                     /protein_id="HCS1721998.1"
                     /translation="MSEDYVIEWDKNFADDLNVVANVFLSHNPTLWPTIFSQLSTQPE
                     IFEDEDEDEYGLQDVLDCSGGDLGNNELAQAFLQVLRGEGFIHLVDWKGEDEEGELAN
                     FAADRFYELTKNLTDSEELRNLLVEITQEDEISDVCEAGDRYLDEIFERIQTELNKRG
                     FQIFDLNEGSDTYNVVVLPMSEYKK"
     gene            complement(6220..7506)
                     /locus_tag="OQP62_002470"
     CDS             complement(6220..7506)
                     /locus_tag="OQP62_002470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026171.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HCS1721999.1"
                     /translation="MEHISTTTLIIILIIMVVISAYFSGSETGMMTLNRYRLRHMAKQ
                     GNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLT
                     FVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIK
                     TDIVVSGSLSKEELRTIVHESRSQISRRNQDMLLSVLDLEKVSVDDIMVPRNEIIGID
                     INDDWKSIERQLTHSPHGRIVLYRDSLDDAISMLRVREAWRLMAEKKEFTKEMMLRAA
                     DEIYYVPEGTPLSTQLIKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMS
                     PTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGT
                     RVRIEQYDIDILDVQENMIKQVKVVPVKPLRESVAE"
     gene            complement(7526..8317)
                     /locus_tag="OQP62_002471"
     CDS             complement(7526..8317)
                     /locus_tag="OQP62_002471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YpjD"
                     /protein_id="HCS1722000.1"
                     /translation="MPVFALLALVAYSFSLALIVPGLLQKNSGWRRMAILSAVIALVC
                     HAVALESRILPGGDSGQNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALI
                     NLAFATFMPNEYITHLEATPGMMVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKL
                     AFSNEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSTENIDKAVLSIVAWF
                     VYIVLLWGHYHEGWRGRRVVWFNVAGAGILTLAYFGSRILQQFVS"
     gene            8483..9844
                     /gene="ffh"
                     /locus_tag="OQP62_002472"
     CDS             8483..9844
                     /gene="ffh"
                     /locus_tag="OQP62_002472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HCS1722001.1"
                     /translation="MFDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVA
                     LPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRSELVAAMGEENQTLNLAAQPPAV
                     VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF
                     PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIKPVETL
                     FVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVG
                     EKTDALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLATKLKKGDGFDLNDF
                     LEQLKQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTLKERAKPE
                     IIKGSRKRRIAQGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGF
                     PGR"
     gene            10188..10436
                     /gene="rpsP"
                     /locus_tag="OQP62_002473"
     CDS             10188..10436
                     /gene="rpsP"
                     /locus_tag="OQP62_002473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000256453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HCS1722002.1"
                     /translation="MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIAS
                     EKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA"
     gene            10455..11003
                     /gene="rimM"
                     /locus_tag="OQP62_002474"
     CDS             10455..11003
                     /gene="rimM"
                     /locus_tag="OQP62_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HCS1722003.1"
                     /translation="MSKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDY
                     QPWFIQKAGQWQQVQLESWKHHNQDLIIKLKGVDDRDAANLLTNCEIVVDSSQLPALE
                     EGDYYWKDLMGCQVVTAEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLD
                     GQVIKKVDLATRTIEVDWDPGF"
     gene            11048..11815
                     /gene="trmD"
                     /locus_tag="OQP62_002475"
     CDS             11048..11815
                     /gene="trmD"
                     /locus_tag="OQP62_002475"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HCS1722004.1"
                     /translation="MFIGIVSLFPEMFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHD
                     RHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSEL
                     ATNQKLILVCGRYEGVDERVIQAEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVL
                     GHEASAIEDSFADGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWL
                     RRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA"
     gene            11856..12203
                     /gene="rplS"
                     /locus_tag="OQP62_002476"
     CDS             11856..12203
                     /gene="rplS"
                     /locus_tag="OQP62_002476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012768745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HCS1722005.1"
                     /translation="MSNIIKQLEQEQMKQNVPSFRPGDTVEVKVWVVEGTKKRLQAFE
                     GVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSIAVKRRGAVRKAKLYYLRE
                     RTGKAARIKERLN"
     gene            complement(12360..13580)
                     /gene="dgcN"
                     /locus_tag="OQP62_002477"
     CDS             complement(12360..13580)
                     /gene="dgcN"
                     /locus_tag="OQP62_002477"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DgcN"
                     /protein_id="HCS1722006.1"
                     /translation="MNKEFSLSRPTFKRTLRRISIISVLLTMTLIWLLICVASVLTLK
                     QYAQKNLDLTAATMAHSLEAALVFSDSAAAAETLATLGRQGQFSAAEVRDKNGRTIAS
                     WRYDARAADDKLIGLISHWLFPLPVSQPVWHNGRAIGEVRLVARDSLIGHFIWLSLAV
                     LTGCILLASGIALLLTRYLHNGVVDALQNITEIVHDVRTNRNFSRRVPDERIAEFHLF
                     AQDFNSLLDEMEEWQLRLQAKNAQLLRTALHDPLTGLANRAAFRSCINALMKDNSARS
                     SSALLFLDGDNFKYINDTWGHAAGDRVLIEVAKRLAEFGGSRYQTYRLGGDEFAMVLY
                     GVHSEYEVQRICAALSQAFNRPFELHNGQRITMTLSIGFALTWEHATAEKLQELADRN
                     MYQAKHRRAERSLN"
     gene            complement(13573..14091)
                     /locus_tag="OQP62_002478"
     CDS             complement(13573..14091)
                     /locus_tag="OQP62_002478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfiR family protein"
                     /protein_id="HCS1722007.1"
                     /translation="MRFSHRFILLLSLLLASLPLYAQCVTEEEKSVRAIVSGIVSYTH
                     WPALSGPPRLCIFSSARFVRVLSEEANWAFPYQPLVIRTTQEALSARCDGFYFGNESP
                     AYQVELTRHYPVNALLLIAEQNTECIIGSAFCLIINNDEVKFSVNLDSLSHSGVRVNP
                     EVLMLARNQKHE"
BASE COUNT         3525 a         3469 c         3735 g         3435 t
ORIGIN      
        1 agaatatatt ttcgaggcat gcatgagata tgaacattga ccagcttcat actgagaagc
       61 tggtcacaaa aaatgtctat tatcggcctg catttttcat aatgcgtgct ttatccagtt
      121 gccactcacg ttctttaaga tcggaacgtt tatcatgttg ttttttacct ttcgccacgc
      181 cgatcttcac tttgcaccag gcatttttcc agtacagaga aagcgcgacg acagtataac
      241 cttcacgatt aatacggcca tacagcgaat caagctcacg ctgatttaac aacagtttgc
      301 gggttcgggt tgggtcgcat acgacatgtg tcgaggcgac cgccatcggc gtaaagtttg
      361 cgccaaacag ccaggcctcg ccatctttga ggataacgta actgtcgccg atattggctt
      421 ttcctgcgcg cagagatttt acttcccagc cttgcagggc gagaccagcc tcgaactctt
      481 cttcgataaa gtattcgtgc cgggcgcgct tattcagcgc gatggtggct gagcccggtt
      541 tatgtgcttt tttcttcgtc ataagtgtcg tgaattcata ggtaatctga tatcgaaaac
      601 accccattac gtcctgatga ggtgcaaaaa tctatcttag catgagttgg gctatgcacg
      661 cacaattaag gcatgacggt tggggacagc atttttttta ctcgctgata agtggtatta
      721 tttacacgat ttatgttgat gggaattgct atgcctcaga ttagtcggac tgctttagtc
      781 ccctacagtg cggaacagat gtatcagtta gtgaatgacg tgcaatcgta tccccagttt
      841 ttgcctgggt gtgttggcag tcgtgtcctg gagtcatcgc cagcacagat gacggcggct
      901 gttgacgtgt cgaaggcggg tatcagcaag acgtttacga cgcgtaatca gctaacgcgt
      961 aaccagagta ttctgatgca tctggtggat ggccccttta aaaagctgat cggcggctgg
     1021 aaatttaccc cgctcagccc cgaggcgtgc cgcattgagt ttcagcttga ttttgagttt
     1081 accaataaac tcattgagct ggcgtttggt cgtatattca aagagttagc gtccaacatg
     1141 gtgcaggcgt ttacggttcg cgccaaagag gtttaccgtg ccggataaac ttgtggttga
     1201 agtggcttat gcgctgccgg aaaagcagta tttgcagcgc gtaacgctgg aggagggcgc
     1261 gacggtcgaa gaggcgattc gcgcttccgg cttgctggaa ttgcgcacgg atatcgatct
     1321 ggcgaaaaat aaagtaggta tctacagtcg tccggtaaaa ctcaccgata cggtgcagga
     1381 tggcgatcgg gttgaaattt accgtccctt aatcgccgat ccaaaagcat tacgccgcca
     1441 gcgtgccgaa aaatcggctg gcagataatt agcctctttt gccggataac ggtgtgaaag
     1501 ccgtaccaca cctgaagcac aggcgtgcct gtaagccaga taaacgtagc gccatcaggc
     1561 aaattcgtac caaatggcgg gggagaggtt tgcaggcctg atgaacgtaa cctcatcagg
     1621 cggtatcaca aaattacttc gtcaacgccg gtttgttatc aatattggtt aacacgccgc
     1681 tgctgttaaa ggtgagcgtc agagtctgct gcgtcacgtt ctcatgtcct ggctgctggc
     1741 ggaagacata aaaccaggtg ttcgtaccaa aaggatcggt catcatcggc gtgcctaaag
     1801 catacgcaac ctgttgttgc gtcataccaa cacgcacttt ggcgacatcc gtaggtgtaa
     1861 gatagttccc ctgattgatg tcaggtcggt aaaccactcg ctccagagtg gaacagcctg
     1921 cggtcaacat caggagtact gctgcggcag cagtcagcgt tttacagcgc atagtgattg
     1981 ggttcctttt cgggcctgag cagtacgtgg ctcatattaa tatgccgatg ataatagacc
     2041 tttcatcact ttaaaacctt ttgctgtcgg gtcttacggc gtttttgttg tgaactcaga
     2101 ccttcgggag ataaaaaagt ttacgccgcc agcagttctt ttgcgtttgc cagcgtatta
     2161 cgcgtaactt cacttcctcc caacaggcgg gccagttcct gtaaacgcgc acgtttatcc
     2221 aaaggttgca tatgggtttc ggtcattgcc ccgtctgttt ctttactgac aaagaagtgc
     2281 tggtgaccgc acccggctac ctgtggtagg tgagtgacgc acatcacctg agtggattcg
     2341 ccaagctgac gcaggagttt accgaccacg gcggcggttg ggccgctgat gccaacatca
     2401 acctcgtcaa aaattagcgc cggcgtttcc attttgcgcg cggtaatcac ctgaatagcc
     2461 agcgcaatgc gcgacagttc accgccagac gcgactttag cgataggctg cagcggctga
     2521 cccgggtttg tcgtcacttt aaactccacg cgatcggcgc cgtcgttgct cagatgatgc
     2581 tcatcaaatt tcacgtcgat agtaaacaga ccgtgcggca tcgaaagtaa atgcatactt
     2641 tcagtgatca actgccccag ctcctgggcg taaaactgac gctgttgatg cagcgcttgc
     2701 gccgtttcca gcgcttgttg gtgatgctta ttaaccgcca gcgtcagcgt ttccagcgaa
     2761 tcggcctgat cgtcgagctg ctgctgttct tcgagcagtg actgataaag ctgcggcagc
     2821 gcttccgggc tgacgtgatg ttttcgcgcc agcgaaattt gtttagcgat gcgctgttca
     2881 agctcaaaca ggcgattggg gtctaaatcc agacgctcgc aatagtggcg taattcatcg
     2941 ctggcttcgg tgagttggat agtggcttct tccagcatat ccaggatgcc ggaaagcttg
     3001 ctgtccatac ccaccagctc gctaaccagt tgttttgcgc tatataactg gctttgcagg
     3061 ttaacgtctt cgccgtccgc gagtagcgcc agagcgttct ggctggtcgt aagcaactgc
     3121 ccgctgttgg ccagccgttt gtactcttcg tcaatttgct cgaattcgcc ggcctgcgga
     3181 ttaaagtcgt tcaactcttt taactgatat tgcagcagtt ccgcgcgcgc ggcgcgttcc
     3241 tgactttgtt gctggtgatg ggcgagatcg cggcagcttt gatgccataa ttggtagtgg
     3301 gcagccatct gctgcgctaa agcggcttcg ttggcatagc tatccagcag cgatttttgc
     3361 tgttcgggtt tggtcagctg ctggtgcgta tgttgaccat gaatttgaat cagcaactga
     3421 ccgagctcgc gcaattgaga taggggcaca gcggtgccgt taataaagcc ccgtgagcgg
     3481 ccatcgctgc tgataacgcg gcgaagtaag cattcgcgac cttcttcaag ctggttttct
     3541 tccagccagc gcaatgccgc aggcgtgtct ttcagcgcaa agcgggcaca caaatcggcg
     3601 cgggtcgctc cggtacggac catatcggcc tcagcgcgac cgcccagaca cagacccagg
     3661 gcatcaatcg caatagattt acccgcgccg gtttcaccag taatgacggt cattccgctc
     3721 tgaaaatcga tctcaagctc acgaacgata gcaaaattgc tgatggtcag ttgcgccaac
     3781 atagctgttt tcctgtatga aaaaccatga ctgtaattaa atacagtata aactggtttt
     3841 ttatacagta aagaggctaa cgtaaaatta gaataatttt tttgaccagc cgagttttgt
     3901 gcttaatgta ttgaaatagc tatagtcttt gggatgtatc aggttgagat ggtagtcgca
     3961 gcggcgaatc agcacatctt ctccttcctg aataggcagc gctatctgac tgtcgcagct
     4021 aatttccaga tcgctacggc gatgcgaaaa acgcagacga atcgtgctac tgctgttaat
     4081 gactaacggg cgcgccgaca aggtatgcgg gaacatcggc accagggtga tggcatccag
     4141 tgaaggggtc agaatagggc cgcctgcgga gagcgaatag gcggtggagc cggtcggcgt
     4201 agaaatgatc agaccatcag atcgctgtga aaaagcgaag gtttcatcaa tataaacctc
     4261 gaattcgatc atatgcgcca cttttcccgg atgcagcacc acttcattaa tggctgtgct
     4321 gatacgcttc tggcggtcct gttggcagac ctgcgcttcc agcagaaaac gtttttcgga
     4381 gatatagcgt ccttccagca catccgataa ttgttgcagg gcgttgtccg gatcgagatc
     4441 ggtcaggaag ccaagattac cgcggttaat gccaatcaca ttgatgtcat aacgcgccag
     4501 cgtacgcgct gcgccaagca tattgccgtc gccgcccaca actaccgcca gatccgcctg
     4561 ttgaccaatt tccgccagcg tgccggttgg cacatttttt agctgtaatt cgtgggcgat
     4621 ttgttgctcc acaatgacct cataaccctg atcgcatagc caacggtaga gcatttcatg
     4681 tgtcgtgagt gcggtgggat gacgcggatg ccccacaatg ccgatacact tgaaatgatt
     4741 attcattttt ctgaggtcct tgtagcgaag attgatgaca atgtgagtac ttcccttgaa
     4801 accctgaatc tgatccccat aataagcgaa gttagcgaga tgaatgcgaa aaaaaacgcg
     4861 gagaaattca tgagtagtaa agaacagaaa acgcctgagg ggcaagcccc ggaagaaatt
     4921 atcatggatc agcacgaaga ggttgaggca gttgaaccaa acgattctgc tgagcaggtg
     4981 gatccgcgcg atgaaaaaat tgcgaatctg gaagttcagc ttgccgaagc ccagactcgc
     5041 gaacgcgaca ccgtgttgcg tatcaaagcg gaaatggaaa acctgcgccg ccgtactgaa
     5101 caggatatcg aaaaagcgca taaattcgct ctcgagaagt tcgtcaacga attgctgccg
     5161 gtaatcgata gcctggatcg cgcgctggaa gtcgcagaca aagccaatcc ggatatggcg
     5221 gcaatggtcg aagggattga gctgacgctg aagtctatgc tggatgtggt gcgtaagttc
     5281 ggcgtggaag tgattgctga gaccaacgtg ccgctggacc cgaacgtgca tcaggcgatt
     5341 gcgatggtgg aatcggaaga ggttccggca ggcaatgtgc tgggtattat gcagaaaggc
     5401 tacacgctga acggtcgtac cattcgcgcg gcgatggtga ctgtagcgaa ggcgaagtaa
     5461 aagtctaatg gccgatgtaa agtcggccat ttttttagct taaaaaatcc tgcacttcca
     5521 gccacggcgt gttgaaatcc tctatttttt atattcgctc attggcagaa cgaccacatt
     5581 ataggtgtca gatccttcat tcagatcaaa aatctggaag cccctcttat tgagttcggt
     5641 ctggatgcgt tcaaagatct cgtcaaggta acggtccccg gcttcacaga catcggagat
     5701 ttcatcctct tgggttattt cgacaagaag atttcttaat tcctcagaat ccgtcaggtt
     5761 ttttgtgagt tcataaaagc gatctgcggc aaaattagcc agttcgcctt cttcatcttc
     5821 acctttccag tcaacgaggt gaataaatcc ttcgccgcgt agaacttgta aaaatgcctg
     5881 tgccagctcg ttatttccga gatcgccacc gctacaatcc aggacgtctt gcaacccata
     5941 ttcgtcttca tcttcgtctt caaagatttc aggttgcgtc gaaagttgag agaaaatagt
     6001 gggccataag gttgggttgt gcgataaaaa aacgttggcg acgacgttga ggtcgtctgc
     6061 aaaattctta tcccattcaa ttacataatc ttctgacata acatcaatat cctttctgaa
     6121 tgcctgaaaa gacattattg cattgttaag taaatggcag gaattgatgg aatcttaaaa
     6181 gacggcgata aaaaaggcga accggagttc gccattgtgt tactccgcca cactctcgcg
     6241 cagcggtttt accggtacaa cctttacctg cttaatcata ttttcctgta catcgagaat
     6301 atcgatatcg tactgctcaa tgcgcacgcg cgtgccagca accggaattt cctccagcgc
     6361 ctccagaatc accccgttga cggtgcgcgc gtcatcttcc ggcaggtgcc agttaaacgc
     6421 tttattgatt tcccggacgt tggcggtacc gtcaataatg accgaaccgt cgttttgcgg
     6481 cgtgacctct tccgccagtg tcggcgacat cgatgtggtg aagtcgccaa cgatctcctc
     6541 gagaatatct tccacggtga ccagcccctg gatatcgcca tattcgttga cgaccagtcc
     6601 gactttcttt ttattgcgct gaaatttaat cagttgcgta ctgagcggcg taccttccgg
     6661 gacgtaatag atttcatcgg cggcgcgcag catcatctct ttggtgaact cttttttctc
     6721 ggccattaac cgccaggctt cacgcacgcg cagcatactg atggcgtcat ccagcgaatc
     6781 gcgatagagc acaatgcgtc cgtgcggcga gtgggtgagc tgccgctcga tagacttcca
     6841 gtcgtcattg atatcgatcc cgataatttc attacgcggc accatgatgt catccacgct
     6901 gaccttttcc agatcgagaa ccgacagcag catatcctga ttgcggcgag agatttgcga
     6961 acgggattca tgcacgatag tgcgtaattc ctctttgctt aacgacccgc tgaccacgat
     7021 gtccgtttta attcccatca gacgcatcag caggcgggtg atggtgttaa gtaaccacac
     7081 cagcggcatc atcagtatct gtaacggcgc cagcaggaag ctgctgggat aggccacttt
     7141 ttccggatag agcgcggcga tagttttggg caggacttcg gcaaaaacta acacgacaaa
     7201 cgtcagtacc ccggtggcga tagccacgcc ggcatcgccg taaagccgca tacccacaat
     7261 cgtgccgagc gccgaggcaa gaatgttgac caggttattg ccaatcagca ccaggcttat
     7321 cagtcggtcg ggtttacgca gtaatttttc tacccgtttt gccgagcgat taccttgctt
     7381 cgccatatgg cgtaaacggt aacggtttag cgtcatcatt ccagtttcgg aaccggaaaa
     7441 ataggccgag atgaccacca tgatgattaa tatgataatc agcgtggtgg tggagatgtg
     7501 ttccagggga aactccttta aaagcttagc ttacaaattg ctgtaatatg cggctaccaa
     7561 aataggccag cgtcagaata cccgcgcctg cgacgttaaa ccacacgacc cgacgacccc
     7621 gccagccttc atggtaatgc ccccacagca gaacgatata gacaaaccat gccacgatag
     7681 agagcacggc tttatcaata ttttcagtac tgaacaggtt atgcatgtaa aacaggccgg
     7741 tacacagagt aagggtcagc agtacgacgc caatctgcgt gatatgaaac attttgcgct
     7801 caatgctcat caatggcggc atttcattac taaacgccag ctttttgttc ttcaactgat
     7861 agtcgatcca cgccagttgt agcgcataca gcgcggcgat tatcagcgtc gcgtaagaga
     7921 aaagcgacag accgatgtgc accatcatgc ctggggtcgc ttccagatgc gtaatatatt
     7981 cattaggcat gaacgtggcg aaggccaggt taatcagcgc aaaagcatag acaatgggca
     8041 gaagtagcca gccgcgatta cgcgacgcga caatggtcat caccgtgcag atcatcaggc
     8101 tgaccagcga accgacattc agcaggctca ggttttgtcc actgtcgccg ccgggcagaa
     8161 tacgcgattc cagcgcgaca gcatggcaca ccagcgcgat gaccgcagaa agaatagcca
     8221 tacgccgcca gccgctgttt ttttgcaaca gtccgggaac gatcagcgcg aggctgaagg
     8281 agtaggcgac aagggcaagt aaagcaaaaa cgggcatagt tgtgtcgaca gttgaccagt
     8341 gagaaagaga agcagtatag cgttacgtga ccgcagctcc aaccgttgca taacaacaaa
     8401 gacggcttca tggtatactg tggcgaaatt ctgtaactgt gtcgctgcgg cgaccaaccg
     8461 tttccacccc aggcgagaga caatgtttga taatttaacc gatcgtttgt cgcgcacgct
     8521 gcgcaatatc agtggccgtg ggcgccttac tgaagacaac gttaaagaga cgctgcgcga
     8581 agtgcgcatg gcgctgctgg aggctgacgt tgcgctgccg gtagtgcgtg agttcatcaa
     8641 tcgcgtaaaa gagaaagcgg ttggtcatga agttaacaaa agcctgaccc cagggcagga
     8701 gttcgtcaag attgtccgta gcgaactggt tgcggcaatg ggcgaagaaa accagaccct
     8761 gaatctggct gcgcagccgc cagccgtagt attgatggcg ggtctgcagg gggcgggtaa
     8821 aaccaccagc gtcggtaagt tgggtaaatt cttgcgcgag aagcacaaga agaaagtgct
     8881 ggtcgtctct gccgacgtct atcgcccggc ggcgatcaaa cagctcgaaa cgctggctga
     8941 gcaggttggc gtggatttct tcccgtctga tgtcggccag aaaccggttg atatcgtcaa
     9001 cgccgcgctg aaagaagcga agctcaaatt ctacgacgtg ctgctggtgg ataccgccgg
     9061 tcgtctgcac gttgacgaag cgatgatgga cgaaatcaaa caggtccacg cttctatcaa
     9121 gccagtagaa acgctgtttg tcgtcgatgc gatgaccggt caggatgcgg cgaataccgc
     9181 aaaagccttt aacgaagcgc tgccgttaac cggtgtggtg ctgaccaaag ttgatggtga
     9241 tgcgcgtggc ggtgcggcgc tctctattcg tcatatcacc ggcaagccga ttaaattcct
     9301 cggtgtcggc gagaaaaccg acgcgctgga gccgttccac ccggatcgta tcgcctcgcg
     9361 tattctcggc atgggcgacg tactgtctct tatcgaagat atcgaaagca aagttgaccg
     9421 cgcacaggct gagaagctgg cgaccaaact gaagaaaggc gacggtttcg acctgaacga
     9481 cttcctggag cagctcaaac agatgaaaaa catgggcggt atggccagtc tgatgggcaa
     9541 attaccgggc atggggcaga ttccggacaa cgttaaatcg cagatggatg ataaggtgct
     9601 ggtgcgtatg gaggcgatca tcaattcgat gacgctgaaa gaacgcgcga agccggaaat
     9661 cattaaaggt tcccgcaagc gtcgtatcgc gcagggctgt gggatgcagg tgcaggacgt
     9721 taaccgcctt ctgaaacagt tcgacgacat gcagcgcatg atgaagaaaa tgaagaaggg
     9781 cgggatggcg aagatgatgc ggagtatgaa ggggatgatg ccgcctggtt ttccaggccg
     9841 ctaatttccc ggctaggctc acttgctatt tcggcaccgg ggtgtgctag ccatcctcac
     9901 gtactgcgtg gccgctaaaa caagggtata aggctatctt gtttgccatt ttagccccgg
     9961 ggtgtgctcg aaatgctcac gtactgcgtg tacgctccgc tttctgcgcg cacgccggag
    10021 ctaaactggc tgcaccgata tacgcctttt atcccttgtt tcgtgttcag tagcaagatg
    10081 ctgattgcat tttccccaga aatcagtaaa attttcgggc ttttaatatg acgccgggct
    10141 ccgttcctcg atgaggcccg gttgttttat tcacacaaga ggatgttatg gtaactattc
    10201 gtttagctcg tcacggcgct aaaaagcgtc cgttctacca ggttgttgtc accgacagcc
    10261 gtaatgcacg caacggtcgc ttcattgagc gcgttggttt cttcaaccca atcgctagcg
    10321 aaaaagaaga aggcacccgc ctggatctgg atcgcatcgc tcactgggtt ggccagggcg
    10381 caaccatttc cgatcgcgtt gcggcgctga tcaaagaagt aaaaaaagca gcttaatctg
    10441 tcacggtggt catgatgagc aagcaactcg ccgcacaagt acccgctgaa ccggttgtac
    10501 tggggaaaat gggttcttca tacggtatcc gtggttggct cagagtgttt tcctccactg
    10561 aagacgccga aagcattttt gactatcagc cctggtttat ccagaaggcg ggtcagtggc
    10621 agcaggtaca gctggaaagc tggaagcacc acaatcagga tctgatcatc aagctgaaag
    10681 gcgttgacga tcgagatgcc gcgaatcttc tgaccaattg cgaaattgtc gtggattcct
    10741 cgcaacttcc tgcgcttgag gagggagact actactggaa agacctgatg ggttgccagg
    10801 tagtcaccgc tgaaggctac gatctcggta aagttatcga catgatggaa accgggtcga
    10861 atgacgttct cgtcattaag gcgaacctga aagatgcatt tggtatcaag gaacgactag
    10921 taccgttcct cgatgggcag gttatcaaga aagtcgatct cgctactcgt actatcgaag
    10981 tagactggga tcctggtttt taaaccaccg gataaacggt aataaatggc gttatgggga
    11041 ttggcttgtg tttattggca tcgttagcct gtttcctgaa atgttccgcg caattaccga
    11101 ttacggggta actggccggg cagtaaaaaa aggcctgctg aacatccaaa gctggagtcc
    11161 tcgcgacttc gcgcatgacc ggcaccgtac cgtggacgac cgtccttacg gcggcggacc
    11221 ggggatgtta atgatggtgc aacccttgcg ggacgccatt catgcagcaa aagccgcggc
    11281 aggtgaaggc gctaaagtga tttatctgtc gcctcaggga cgcaagcttg atcaagcggg
    11341 cgttagcgag ctggccacga atcagaaact cattctggtg tgtggtcgct acgaaggcgt
    11401 agatgagcgc gtaattcagg ccgaaattga cgaagaatgg tcaattggcg attacgttct
    11461 cagcggtggc gaactaccgg caatgacgct gattgactcc gtcgcccggt ttataccggg
    11521 ggttctgggg catgaggcat cagcaatcga agattcgttt gctgatgggt tgctggattg
    11581 tccgcactat acgcgccctg aagtgttaga ggggatggaa gtaccgccag tattgctgtc
    11641 gggaaaccat gctgagatac gtcgctggcg tttgaaacag tcactgggcc gaacctggct
    11701 tagaagacct gaacttctgg aaaacctggc tctgactgaa gagcaagcaa ggttgctggc
    11761 ggagttcaaa acagaacacg cacaacagca gcataaacat gatgggatgg cataggcccc
    11821 cgaatatcag tttacccagg ataagagatt aaattatgag caacattatt aagcaacttg
    11881 aacaagagca gatgaagcag aacgtacctt ccttccgtcc gggcgatacc gtggaagtga
    11941 aagtatgggt tgttgaaggt accaagaaac gtctgcaggc attcgagggc gtggttatcg
    12001 ctattcgtaa ccgcggtctg cactctgcat tcactgttcg taaaatttcc aacggcgaag
    12061 gcgttgagcg tgtcttccag actcactctc cggtagttga cagcattgct gttaaacgtc
    12121 gtggtgctgt tcgtaaagct aaactgtact acctgcgtga gcgtactggt aaagcagctc
    12181 gtatcaaaga gcgtcttaac taagaacgcg ctttcgcaac atccgaaagc ttgtagaaaa
    12241 gaaggggctg gcattacgct ggcccctttt tttatgggtt gctccacgcc atagacggtt
    12301 gcatgattaa gctgggtctg tggtatcaac gctgagtcag aaacggcctg gcccgttcct
    12361 tagtttagcg agcgttctgc acgccggtgt ttagcctgat acatatttcg atcggccagt
    12421 tcttgtagtt tttcggcagt ggcatgttcc catgtcagcg caaagccaat actcagggtc
    12481 atcgttattc gctggccgtt atgcagttca aaaggtcgat taaacgcctg ggatagtgct
    12541 gcgcaaatac gttgtacttc atactccgaa tgtacaccgt aaagcaccat cgcaaattca
    12601 tcgccgccga gtcggtaagt ctgataacgg ctaccaccga attccgctaa tcttttggca
    12661 acctctataa gtacgcggtc gcctgccgca tgtccccagg tatcattaat atatttaaag
    12721 ttatcgccat ccagaaataa caatgccgaa ctgctacgag cggaattgtc cttcatcagc
    12781 gcgttaatac agctgcgaaa tgccgcgcga ttggcaagcc ccgtcagcgg atcgtgcaac
    12841 gcggtacgta gtaattgtgc atttttagcc tgaagccgta gctgccattc ttccatctca
    12901 tccagaaggc tattgaaatc ctgcgcaaac aggtgaaatt ccgcaatacg ctcatcaggt
    12961 acccggcgtg aaaaatttcg gttagtgcga acgtcgtgta caatttcagt aatattttgt
    13021 agcgcatcca caacgccatt gtgtaaataa cgcgtgagta gcagggcaat gccggatgct
    13081 agcagaatac atcctgtcag cactgccagc gatagccaga taaaatgacc aataaggctg
    13141 tcgcgggcga caagccgtac ttcgccgata gccctgccgt tgtgccagac gggttgcgat
    13201 accggcaatg gaaaaagcca gtggctaatt aagccgatga gcttatcgtc tgcggctcgc
    13261 gcatcatatc gccatgaggc gatagtacgg ccatttttat cgcggacctc cgccgctgaa
    13321 aattgtccct ggcgtcccag tgtggcgagc gtttccgctg cggccgcgct atcggaaaat
    13381 accagtgccg cttcaaggct atgggccatt gtggcggcgg tcaaatcgag attcttttgc
    13441 gcatactgtt tgagcgtaag gacagacgca acgcaaatta atagccagat caatgtcatt
    13501 gtaagcagca cgctgattat actaatccgc cgtagtgtgc gtttaaatgt tggtctggac
    13561 agagaaaatt ccttattcat gcttttgatt ccgtgcaagc attaatactt ctggattcac
    13621 tctcacgccg ctatgcgaga gggagtccag gttgacggaa aatttgactt catcattgtt
    13681 aatgatcaga caaaatgcgc tgccaataat acattcggta ttttgctcgg caattaataa
    13741 caaggcatta actggataat gacgcgttaa ctccacctga taagctggcg attcattgcc
    13801 aaagtaaaaa ccatcacagc gggcgctcag ggcttcttgt gtggtacgga tgacaagcgg
    13861 ttgataaggg aaagcccagt tagcctcttc gctaagtacc ctgacaaaac gcgcagatga
    13921 aaatatgcat agccttggcg gcccggataa cgctggccag tgtgtataac tgacgatacc
    13981 ggagacaatg gcgcgtacgg atttctcttc ttccgtgaca cattgagcat acagaggcaa
    14041 gcttgctaat aatagcgata acagaaggat aaatcggtga gaaaaacgca ttaacaagtc
    14101 cccaccatct tcagtcgtaa aacattaaaa tacatccgtg attgtttgta gcaaaataac
    14161 atta
//
LOCUS       DAJVSD010000103        14151 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.103, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000103 DAJVSD010000000
VERSION     DAJVSD010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 14151)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14151)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14151
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.103"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            126..295
                     /locus_tag="OQP62_002479"
                     /pseudo
     CDS             126..295
                     /locus_tag="OQP62_002479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462383.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YhfL family protein"
     gene            complement(439..1443)
                     /gene="trpS"
                     /locus_tag="OQP62_002480"
     CDS             complement(439..1443)
                     /gene="trpS"
                     /locus_tag="OQP62_002480"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HCS1722008.1"
                     /translation="MTKPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQ
                     HAITVRQDAQQLRKATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFG
                     ELSRMTQFKDKSARYAENINAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDI
                     AQRFNGLYGDIFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVK
                     KIKRAVTDSDEPPVVRYDVKEKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGE
                     VAEAVSGMLSELQERYHRFRNDEAFLQKVMKDGAEKASARAAETLKAVYEAIGFVAKP
                     "
     gene            complement(1436..2194)
                     /gene="gph"
                     /locus_tag="OQP62_002481"
     CDS             complement(1436..2194)
                     /gene="gph"
                     /locus_tag="OQP62_002481"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HCS1722009.1"
                     /translation="MNKLQNIRGVAFDLDGTLVDSAPGLAAAVDMALYALELPVAGEE
                     RVITWIGNGADVLMERALTWASQERATLRKTMGKPPVDEDIPAEEQVRILRKLFDRYY
                     GEVAEEGTFLFPHVADTLGALHASGLSLGLVTNKPTPFVAPLLESLDIAKYFSVVIGG
                     DDVQNKKPHPEPLLLVASRLGMTPEQMLFVGDSRNDIQAAKAAGCPSVGLTYGYNYGE
                     VIALSEPDVIYDSFNDLLPALGLPHSDNQEIKND"
     gene            complement(2187..2864)
                     /gene="rpe"
                     /locus_tag="OQP62_002482"
     CDS             complement(2187..2864)
                     /gene="rpe"
                     /locus_tag="OQP62_002482"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HCS1722010.1"
                     /translation="MKQYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVP
                     NLTIGPMVLKSLRQYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRT
                     LQLIKEHGCKAGLVFNPATSLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLRE
                     VRRRIDASGYDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDKPDYKKVIDEMRSE
                     LAKVSHE"
     gene            complement(2882..3718)
                     /gene="dam"
                     /locus_tag="OQP62_002483"
     CDS             complement(2882..3718)
                     /gene="dam"
                     /locus_tag="OQP62_002483"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine-specific DNA-methyltransferase"
                     /protein_id="HCS1722011.1"
                     /translation="MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLN
                     TDFSRYILADINSDLISLYNIVKLRTDEYVQASRELFMPETNQAEVYYQLREEFNTCQ
                     DPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKRPYFPEAELYHFAEKAQNAFF
                     YCESYADSMARADKSSVVYCDPPYAPLSATANFTAYHTNSFSLTQQAHLAEIAENLVS
                     NRIPVLISNHDTALTREWYQLAKLHVVKVRRSISSNGGTRKKVDELLALYQPGVATPA
                     RK"
     gene            complement(3899..5176)
                     /gene="damX"
                     /locus_tag="OQP62_002484"
     CDS             complement(3899..5176)
                     /gene="damX"
                     /locus_tag="OQP62_002484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein DamX"
                     /protein_id="HCS1722012.1"
                     /translation="MDEFKPEDELKPDPSDRRTGRSRQSSERDNEPQINFDDVDLDAD
                     DRRPTRTRKARSEEPEVEEEYESDEDDTVDEERVERRPRKRKKAAHKPASRQYMMMGV
                     GVLVLLLLIIGIGSALKAPSTSSSEPSASGEKSIDLSGNAADQANATQPAPGATSAEQ
                     TAGNTSQDISLPPISSTPMQGQSPVVADGQQRVEVQGDLNNALTQNPEQMNNVAVNST
                     LPTEPATVAPVRNGSTTRQAAVSEPAERHTTRPERKQAVIELKKPQTTAKTTTAEPKK
                     PVAPVKRTEPAAPAATPKATTTTAAPQATASAAPVQTAKPAQASTTPVAGGGKSAGNV
                     GALKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVTGMYAS
                     KEDAKRAVSTLPADVQAKNPWAKPLHQVQADLK"
     gene            complement(5274..6362)
                     /gene="aroB"
                     /locus_tag="OQP62_002485"
     CDS             complement(5274..6362)
                     /gene="aroB"
                     /locus_tag="OQP62_002485"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HCS1722013.1"
                     /translation="MERITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNET
                     LAPLYLDKVRGVLERAGVNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVAL
                     GGGVIGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQP
                     ASVVVDLDCLKTLPARELASGLAEVIKYGIILDADFFTWLEGNLDALLRLDGPAMAYC
                     IRRCCELKAEVVAADEREAGLRALLNLGHTFGHAIEAEMGYGNWLHGEAVAAGIVMAA
                     RASERLGQFSSADTQRIIALLERAGLPVNGPCEMSAQDYLPHMLRDKKVLAGELRLVL
                     PLTIGKSEVRGGVSHEVVLSAIADCQQA"
     gene            complement(6419..6940)
                     /gene="aroK"
                     /locus_tag="OQP62_002486"
     CDS             complement(6419..6940)
                     /gene="aroK"
                     /locus_tag="OQP62_002486"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004709337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroK"
                     /protein_id="HCS1722014.1"
                     /translation="MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG
                     ADVGWVFDVEGEDGFRNREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVY
                     LETTIEKQLARTQRDKKRPLLQVEAPPREVLEALANERNPLYEEIADVTIRTDDQSAK
                     VVANQIIHMLESN"
     gene            complement(7405..8643)
                     /gene="hofQ"
                     /locus_tag="OQP62_002487"
     CDS             complement(7405..8643)
                     /gene="hofQ"
                     /locus_tag="OQP62_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA uptake porin HofQ"
                     /protein_id="HCS1722015.1"
                     /translation="MKRWIAIILIVLMPAAQAGKAAKVTLVVDDVPVVQVLQALAEQE
                     RQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGLVLRQEGNILHVHSQAWQKEHSA
                     RQDAERLRLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDN
                     RAALAELEKWVSQMDLPVAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTT
                     LSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIK
                     QGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQA
                     DGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDG
                     KEDERRELVVFITPRLVATE"
     gene            complement(8558..8959)
                     /locus_tag="OQP62_002488"
     CDS             complement(8558..8959)
                     /locus_tag="OQP62_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2531 family protein"
                     /protein_id="HCS1722016.1"
                     /translation="MKVSRGVLLCFCLLTLTGMRDPFRPPEDRCRIAELSQWRYQGAV
                     RKGERWTGILKDSQQKWRRVEEGQTLENGWTIVRLTAEALTLTTGKNCAPPQWRWLRQ
                     GADNEAMDSHNTDSLDARRAGGKSGESDAGG"
     gene            complement(8949..9422)
                     /locus_tag="OQP62_002489"
     CDS             complement(8949..9422)
                     /locus_tag="OQP62_002489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722017.1"
                     /translation="MNALFDIWYGMSRRGRVFCWCAGVLCLTLTVALSVGYPGWKTLD
                     TQHARLSQQREAARQQWRHLRRLSVAAEPLFGRTIENPRPFSPLDFQAPPLRLLHWQP
                     SAQGGEMALKTSWDAVPSLFVRLAESEMSVSRFSLRREGAELLITLQLERLANEG"
     gene            complement(9406..9945)
                     /locus_tag="OQP62_002490"
     CDS             complement(9406..9945)
                     /locus_tag="OQP62_002490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HCS1722018.1"
                     /translation="MAHSVNLLPWRRQHYVARLRLWCVVWGASLLLIASLATIARLVF
                     WQEGRINELLLTAENGRTTALAANIPQLQQRQRQQQARLQRQAQRELTQAWQSILTDL
                     ANLLPEQAWLTSLNYQQETLELEGLARTFDALLTLETSLRHYVSFPLNRTGATRQDAQ
                     GRWQFHYQLTRSAARERAL"
     gene            complement(9945..10724)
                     /locus_tag="OQP62_002491"
     CDS             complement(9945..10724)
                     /locus_tag="OQP62_002491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofM"
                     /protein_id="HCS1722019.1"
                     /translation="MAFKTWQIGLHIQQHEALAIAVIRGASGWSLQRWWRLPLMNAST
                     AEGTIPDPQSLAHVLRPWSRELPLRHRIYLSFPANRTLQRAFPHPPMRLREREQVAWL
                     SQTMARELDMDPDLLRFDFQDDALSPAFNVTAVQSKEISELLTLAQTLNVRIAAVTPD
                     ACALQRLLPFIPSGRQCLVWRDESQWLWATRYAWGRKSAREAMTLHDLAATLSVVPEH
                     ISLCAEGEFDPWRAVTVRQPPVPPDGYRFAIALGLAMGEIR"
     gene            10845..13397
                     /gene="mrcA"
                     /locus_tag="OQP62_002492"
     CDS             10845..13397
                     /gene="mrcA"
                     /locus_tag="OQP62_002492"
                     /EC_number="2.4.1.129"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312265.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase/peptidoglycan
                     DD-transpeptidase MrcA"
                     /protein_id="HCS1722020.1"
                     /translation="MKFVKYLLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRL
                     QIPMQVYSADGELIAQYGEKRRIPVTLDQIPPEMINAFIATEDSRFYEHHGIDPVGIF
                     RAASVALFSGHASQGASTITQQLARNFFLSPERTLMRKIKEAFLAIRIEQLLNKNEIL
                     ELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLSLSEMAVIAGLPKAPSTFNPLYSMDRA
                     VARRNVVLSRMLSEGYITQAQYDQARSEPIDANYHAPEIAFSAPYLSEMVRQEMYNRY
                     GESAYEDGYRIYTTITRKVQQAAQQAVRNNVLDYDMRHGYSGPANVLWKVGETAWDSK
                     KITDTLKALPTYGPLLPAVVTSANPQEATAALADGTSVSLHMEGMRWARPYRSDTQQG
                     PTPRKVTDVVQTGQQIWVRQVDNDWWLAQVPEVNSALVSLNPQTGAVLALVGGFDFNQ
                     SKFNRATQALRQVGSNIKPFLYTAAMDKGLTLASMLNDVPISRWDAGAGSDWRPKNSP
                     PQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSA
                     SFTPMQVARGYAVMANGGFLIDPYFISKIENDQGGVIFEAKPKIACTECDIPVIYGNT
                     QKSDVLENTNVEEVAVSQEQQNSAVPMPELEQANQALVAQNGTQEYAPHVINTPLAFL
                     IKSALNTNIFGEPGWMGTGWRAARDLKRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVW
                     IGFDDHRRDLGRTTASGAIKDQISGYEGGAKSAQPAWDAYMKAVLEGVPEQPLTPPPG
                     IVTVNIDRSTGQLASGGNSREEYFIEGTQPTQQAVHEVGTTIIDNGETHELF"
     gene            complement(13493..14056)
                     /gene="nudE"
                     /locus_tag="OQP62_002493"
     CDS             complement(13493..14056)
                     /gene="nudE"
                     /locus_tag="OQP62_002493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000045725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HCS1722021.1"
                     /translation="MSKSLQKPTILKVETVAQSRLFNVESVDLEFSNGVRRVYERMRP
                     STREAVMIVPIVDEHLILIREYAVGTESYELGFSKGLIDPGETVFEAANRELKEEVGF
                     GAHNLTFLKKLSMAPSYFSSKMNIVVAEDLYPESLEGDEPEPLPQVRWPLAHLMDLLE
                     DPDFNEARNVSALFLVREWLKAQGRIA"
BASE COUNT         3182 a         4086 c         3615 g         3268 t
ORIGIN      
        1 ctggtaaaga taaagtcctt atttggacta cctgcattgt ttattaattg ctatcgtact
       61 atacgctaaa tagatcttat atttattcca ccagtagtat tcgttttatc aacaaggatt
      121 ttgacatgtt taaatttgta aaaattgccg ttgtggcagg ggttctggcg acgcttaccg
      181 cctgtactgg tcatatcgaa aacaaaaaaa taactgcagc tacgattatt tgctgcaccc
      241 tgcaatttct atttctaaaa ttattggcgg ttgcggcccg gctgccgatc aataatagaa
      301 acgactgcgc agatacaaaa aaaccgggat ttcccggttt ttttacaggt ctgataaaca
      361 gtatggcaca ggtgccttgt ccaacttacg ttcgttggta ggcccgataa gctagcgcca
      421 tcgggcaagc aattaccgtt acggtttcgc cacaaagcca atggcttcgt aaacggcttt
      481 cagcgtttcg gccgcacgtg cgctggcttt ttccgccccg tctttcatca ccttctgcaa
      541 gaacgcttcg tcgttgcgga aacggtgata gcgctcctgc aactcagaca gcattccgga
      601 aaccgcctcc gccacttcgc ctttcaaatg gccatacatt ttaccttcaa actgtttttc
      661 cagctcagga atgctctgac cggtcacggc ggaaaggata tccagcaggt tagagacacc
      721 cgctttctct ttcacatcat aacgcactac cggcggctcg tcggagtcag tgaccgctcg
      781 tttgattttc ttcactaccg atttcggatc ttccaacagg ccgattacgt tattacggtt
      841 atcgtccgat ttggacattt tcttcgtcgg ctccagcaac gacatcacgc gcgcaccgga
      901 ttttggaata aacggttccg gtactttgaa aatatcgcca tacagcccgt tgaaacgctg
      961 ggcgatatcg cggctcagtt ccagatgctg cttctgatct tcgcctaccg gcaccagatt
     1021 ggtttggtac agcaggatgt ctgccgccat cagcaccggg taatcaaaca ggccggcgtt
     1081 aatattttcc gcatagcgcg cagatttatc tttaaactgc gtcatacggc tcagctcgcc
     1141 gaaataggta tagcagttca gcgcccagcc aagctgcgca tgttccggca catgggactg
     1201 aacgaaaata gtgctctttt caggatcaat accacatgcc aagtacagcg ccagcgtatc
     1261 cagcgtcgct ttacgtagct gctgcgcgtc ctgacgtacg gtaatagcat gttggtctac
     1321 gatgcagtag atgcaatgat agtcatcctg catgtttacc cactgacgca atgcccccat
     1381 atagttgcca atggtcaatt cacctgaggg ctgtgcgcca ctaaaaacga tgggcttagt
     1441 cattttttat ttcctggtta tcgctatgcg gaagcccaag tgcgggcaaa agatcgttaa
     1501 aactgtcata aatgacgtcc ggctcgctaa gggcgatcac ttcgccataa ttgtagccgt
     1561 atgtcaggcc aaccgaaggg cagcccgccg cttttgcggc ctgaatatca ttacgcgaat
     1621 cgccgacaaa aagcatctgc tccggcgtca tgcccagtcg gcttgccacc agcaacaacg
     1681 gctctggatg cggcttctta ttttgcacat catcgccgcc gataaccacg ctaaagtatt
     1741 tggcgatatc aagcgattcc agcaacggcg cgacgaacgg cgtcggctta ttcgtcacca
     1801 gacctaatga caatccgctg gcgtgcagcg cgcccagcgt gtcggcgaca tgcggaaata
     1861 aaaaggtgcc ctcttccgcc acttcgccat aatacctgtc gaacagttta cgcagaatgc
     1921 gtacctgttc ctcggcagga atatcttcat caacgggcgg tttccccata gtcttacgca
     1981 gcgtggcgcg ctcttggcta gcccaggtca gcgcgcgttc catcaatacg tctgcgccgt
     2041 taccaatcca ggtaatcacg cgctcctcgc ccgcgaccgg cagttccagc gcatacagcg
     2101 ccatatccac cgccgcggca agacccggcg cgctatccac cagcgtaccg tcaagatcaa
     2161 aggcgacgcc ccgaatattc tgcaacttat tcatgactta cctttgccag ctcactgcgc
     2221 atttcatcaa tcactttttt gtagtcgggt ttatcgaaaa ttgccgaccc cgcaacaaac
     2281 atgtccgcac cagctgcggc gatctcgccg atattgttca ccttcacgcc gccgtccact
     2341 tccaggcgaa tgtcgtaacc ggacgcatca atgcggcgac gcacttcgcg cagtttatcc
     2401 agcgtctgcg gaataaaaga ctggccgccg aagcctgggt tcacggacat cagcaggatc
     2461 acatccagtt tgtccatgac gtaatcgaga taactgagcg acgttgccgg gttgaatacc
     2521 agccccgctt tacagccgtg ctctttaatc agctgtagcg tgcggtcaac atgttcggag
     2581 gcttccgggt gaaaggtaat gatgctcgcg ccagcggcgg caaagtcggg cacgatacgg
     2641 tcaaccggct tgaccatcag gtggacatca ataggcgcgg taataccgta ctgacgcagg
     2701 gatttcagca ccatcgggcc gatagtcagg ttcggcacat agtgattatc catgacgtca
     2761 aagtgtacaa catcagcacc ggcagccagc gctttggcgg tgtcttcacc caggcgagca
     2821 aaatcagccg acagaattga gggggcaatc aaatactgtt tcatccgctt ctccttgaga
     2881 attattttct tgcaggcgtt gcgactcctg gttggtacag agccagcagt tcgtccacct
     2941 ttttacgtgt gccgccgttg ctgcttatac tgcgtctaac tttgacgaca tgcaattttg
     3001 cgagttgata ccactcgcgt gtgagcgccg tatcatggtt ggaaatgagc accggtatcc
     3061 ggttactgac cagattctca gcgatttccg ccagatgcgc ttgttgcgtc aggctaaaac
     3121 tattggtgtg atacgctgtg aagttagccg tggcggacaa cggcgcataa ggcggatcgc
     3181 aatagaccac cgacgacttg tccgcacgcg ccatactgtc tgcgtatgac tcacagtaaa
     3241 agaacgcatt ctgcgctttt tctgcaaagt ggtacaactc cgcttccggg aagtaaggtc
     3301 ttttataacg accaaacggt acattaaatt ccccgcgcaa gttatagcgg cagagtccgt
     3361 tataaccgta gcggttcaga tataaaaaca gtaccgcccg acgaaagggg tcctggcagg
     3421 tgttgaactc ctcacggagt tggtaataga cctcagcctg gttagtttca ggcataaaca
     3481 gctcgcgcga agcctgtaca tactcgtcag tacgtaactt cacgatgtta tagaggctaa
     3541 taaggtcgct gttgatatcg gcgaggatat aacgagaaaa gtcggtgtta agaaacaccg
     3601 atccggcacc cacaaaaggt tcgacaaggc actcgccttt tggcaaatgt cgtttgatat
     3661 catcaagcag agggtatttt ccccctgccc acttcaaaaa agcgcgattt tttttcatgc
     3721 tgactaacta attacacctt ctccggctgt ggagaaagct ccgacagcat cctgcgcttt
     3781 aggctgtgcc gcgttgcttt acggcgcatt tgacggtagc aaatgcgccc ctcgcgcctg
     3841 tcctgaaaaa aaatagctgt cagcgacact cacaggcaat tgcaggacac agcctggatt
     3901 atttcagatc ggcctgaacc tgatgcaacg gttttgccca cgggtttttc gcctgcacat
     3961 cggcaggtaa ggtggacacc gcacgtttag catcttcttt cgaagcatac atccccgtta
     4021 ccagcacata ccacggttgt ccattacgcg tcgtctcgta taccacataa tttttcaggt
     4081 tctctttctt cgcccaaccg ttcaggttgt cgtaatttga agaactactg agctgcaatg
     4141 tgtagtggct ggatggcgcg ctctttaatg cgccaacgtt gccggcgctt ttcccgccgc
     4201 ctgcgacagg cgtcgtcgag gcttgcgccg gcttcgcggt ttgtaccggc gcagcgcttg
     4261 ccgtcgcttg cggcgcagcc gtcgtggtgg tcgctttcgg cgtcgcggct ggcgctgccg
     4321 gttccgtgcg tttcactggc gcgaccggtt tcttcggttc cgcagtggtg gttttcgccg
     4381 tggtctgcgg tttcttaagt tcaatgacgg cctgtttacg ttccggacgc gtggtatgac
     4441 gctcggcagg ttcgctaacc gccgcctgac gcgtcgtgct gccattgcga actggcgcga
     4501 cggttgcagg ctctgtcggc aacgtagagt tcaccgcaac attgttcatc tgctctggat
     4561 tctgcgtcag cgcattattc agatcgccct gcacttccac gcgctgctga ccgtcagcga
     4621 ccacaggcga ctgtccctgc atcggcgttg aagaaatcgg cggcaacgaa atatcctgcg
     4681 acgtattgcc cgcggtttgt tctgcggagg tggcgcccgg cgcaggctgg gtcgcattcg
     4741 cctgatcggc ggcgttaccg gaaagatcga tactcttttc gccagaggcc gacggctcgc
     4801 tggaagacgt tgagggggct ttcagcgcgg agccgatacc gataatcaac agcagcagca
     4861 ccagtacgcc aacgcccatc atcatgtact gacgagaggc tggcttatgg gccgcttttt
     4921 tacgcttacg tggacggcgt tcaacacgct cttcgtccac cgtatcgtct tcatcggatt
     4981 cgtactcttc ttcaacttca ggttcttcac tacgcgcttt acgcgtacgc gtcggacggc
     5041 gatcgtcggc atccagatca acgtcatcaa agttgatctg cggctcatta tcgcgttctg
     5101 aagattgacg agaacgacca gtacgacgat cgctgggatc gggtttcagc tcgtcttctg
     5161 gtttgaattc atccatttaa caccccactc aaaggttaat gcttacgaca ttgcacataa
     5221 cctgaagcta aaagactgac agctacgcaa tatcagtctg acctttcttg ttgttacgcc
     5281 tgctgacagt cagcaatcgc gctaagaacg acttcgtgcg acactccgcc gcgcacttca
     5341 cttttcccta tggtcagcgg aagcactaaa cgcagctccc ccgctaacac ttttttatct
     5401 cgcagcatgt gcggcaaata gtcctgcgcg gacatctcgc aagggccatt gactggcaac
     5461 ccggcccgtt cgagtagcgc gatgatgcgc tgcgtatcag cagaactgaa ctgccccaaa
     5521 cgctcggatg cgcgcgcagc catcactata cctgcggcaa cggcttcacc atgtaaccaa
     5581 ttgccatatc ccatttccgc ttcaatggcg tggccaaagg tatgcccaag attcagtaaa
     5641 gcacgtaagc ccgcttcacg ctcgtcggcg gcaacaactt cggctttcag ctcgcaacaa
     5701 cgacgaatac agtacgccat cgccgggccg tccagacgca atagcgcatc cagattaccc
     5761 tcaagccagg tgaagaagtc tgcgtcgagt ataatgccgt atttgatcac ctctgccagt
     5821 cccgatgcca gttcgcgtgc gggaagcgtt ttcaggcaat caagatcgac aaccacagaa
     5881 gcgggttggt aaaacgcgcc aatcatgttt ttgccaaggg gatggttgac ggcggtcttc
     5941 ccgcccacgg aagaatcaac ctgcgacagt aaggtagttg gcacctggat gaaacgaacg
     6001 cctcgctggt agctggccgc cgcaaaaccg gtaagatcgc caatcacgcc gccgccaagc
     6061 gcgaccagcg tggtatcacg accatgcggt tttttcagta acgccgtaaa caccgtatcc
     6121 agcaccgtca ggctcttata ctgctcgccg tcaggaagaa tcacgctgtc tacgttaacg
     6181 cccgcccgtt cgagtacgcc gcgaaccttg tccagataaa gcggcgccag ggtttcgttg
     6241 gtcactaaca tgacctgatc gcctgatttc agcggcaaga atgaagctgg ttcgttaaac
     6301 aaaccagccg cgatggtgat cgggtaacta cgttccccga gagtgactgt aatcctctcc
     6361 atgacgcgac atccacctta gttacttgtg cccgcttacc cagcgtattc tgcttgaatt
     6421 agttgctttc cagcatatga ataatctggt ttgccacaac cttagcgctt tgatcgtcgg
     6481 tgcgaatggt gacgtcggca atctcttcgt acagcggatt gcgttcgtta gccagcgctt
     6541 ccagaacttc gcgaggcggt gcttcaacct gcaacagcgg gcgtttttta tcacgctgcg
     6601 tgcgcgccag ttgtttttcg atggtcgttt caaggtagac cacgacgcca cgcgcggaga
     6661 gacggttacg cgtttcacgc gattttacag agccaccgcc ggttgccagc acaataccct
     6721 gtttttccgt caattcgttg ataacttttt cttcacgatt acggaagccg tcttcacctt
     6781 caacatcgaa gacccagccc acatcagctc cggttcgttt ctcaatctct tgatcagaat
     6841 cgtaaaattc catattgagt tgttgagcta actggcgccc aatagtgctt tttccggcac
     6901 ccataggccc aaccagaaag atattgcgtt tctctgccat tttttcggta ctactaagac
     6961 tattcgttaa tggtaaaccc gcttcacaga cacccagcgc agcaggacat gaactgaaac
     7021 ctcataagat attgcgagag tcagactgaa aattatctca atactcaagc gggtttggca
     7081 actgaataaa tcaccaagcc tgattgttgc aaaacccgag ttagcgttgc cgaatggcga
     7141 ccagaacaac atatccggcc tacaaattgc tctactttca aacaattgtg cgcaatccgc
     7201 agaaccaata cgtctgcatc agcggacatt cagccgttta tcatcggtct tatgcacacc
     7261 ttcggcaagg caaagcgcat taatcaatgc gtaagcaacg aaaagcacga ctctcaaatc
     7321 ggtactcctt gtatgctaaa tacatccgca cgtcaaatcc cgcagatgcg ttcagtgcaa
     7381 aaacagcgct tttttatgca taaattattc tgtcgccacc agtctggggg tgataaacac
     7441 cactaattcg cgtcgctcgt cctctttgcc gtcatggcgg aagagctgac caagccaggg
     7501 aatatccccc aacagcggca cgctatcgct acccgattta ttttttcgcg aaaaaatgcc
     7561 gcccagcgcc agcgtctcgc cgctttttac ctctacctgc gtttcaattt cctgtttatc
     7621 tatcgccagc acttcgccgt cagcctgttg tagtacctga ccgggaacat tctggctgat
     7681 atgtaacttc aggcggatgc gccctttttg caaaacggtg ggcgtcacct ccattcccag
     7741 taccgcttct ttaaattcca cggaggtcgc gccgctttcg ccgctggaaa cctgataagg
     7801 aatttcgctg ccttgcttga tactggctgg ctgtagatgc gaagccagca gccgggggct
     7861 ggcgataata tccaactgct gcttttgttc cagcgctgac agctctaaat ccagcaggcg
     7921 tccgttaatg cgcccgatgt taaacccgac gcgtgaggtg gcggcggcga cggataaatc
     7981 actggaaagc gtcgtcacgt cacccaccgc gcccgcttgc gtcgcgtcag ccagcgtcca
     8041 ctttacgccc agttcccgta gactcttttc gttaatggtg acgatatgcg ccgccagctc
     8101 cacctgcgcc accggcagat ccatttgcga tacccatttt tccagctccg ccagggccgc
     8161 gcggttatcg cgcaacagca ggcggttggt gcgcttatct accatgatgg ttcccttcgc
     8221 gctcaggagt ttctcgcccg ctttcgccag ttcgccggca tcggcgtatt gcaggctaat
     8281 gctgcggttt tccagcggta aattagcctg aagccttaac cgctcggcat cctgccgcgc
     8341 actgtgttct ttctgccagg cctgtgaatg aacatggaga atattcccct cctgacgcag
     8401 caccagcccc gcgctattga ccaccgtctg aagcgcctgt ttccacggca catccgtcag
     8461 atgtagcgat aatgtcccgc tgacgtccgg cgacaccacc agattctgcc gctcctgttc
     8521 ggctaaagcc tgcaaaacct gcaccacagg aacgtcatca accaccagcg tcactttcgc
     8581 cgcttttccc gcctgcgcgg cgggcatcaa gactatcagt attatggcta tccatcgctt
     8641 cattgtccgc tccctgacgt aaccaccgcc actgcggcgg cgcacaattt ttaccggtcg
     8701 ttaacgttaa ggcttccgcc gtcaggcgga caatcgtcca accgttttcc agcgtctgcc
     8761 cttcttccac tcgccgccat ttttgctggc tgtctttaag aatgcctgtc catcgctcgc
     8821 ctttacgcac cgcgccctga tatcgccact gcgagagttc cgctatccgg cagcgatctt
     8881 ccggcgggcg gaagggatcg cgcattcccg tcaacgtcag caaacaaaaa cagagcaata
     8941 caccgcggct aaccttcatt cgccagtcgc tccagttgca gcgttatcaa taattccgcc
     9001 ccctccctac gcaatgaaaa ccgacttacg ctcatctcgc tttcggccaa ccggacaaac
     9061 agcgacggca ccgcatccca ggacgttttc agcgccattt ctcccccctg cgccgatggc
     9121 tgccagtgca gcaaacgcaa gggaggcgcc tggaaatcta acggcgaaaa aggacgcgga
     9181 ttttcgatgg tacgcccgaa aagcggttca gccgcgacgc tcagacggcg cagatgacgc
     9241 cactgttgcc gggcggcctc gcgctgctgg cttaaccgcg catgttgcgt atccagcgtc
     9301 ttccagccgg gatagcccac agataacgcg accgtcagcg tcaggcacag cacgcctgca
     9361 caccaacaaa aaacccgacc acggcgcgac atcccgtacc agatatcaaa gagcgcgttc
     9421 acgggcggcg ctcctcgtta actgataatg gaactgccag cgcccttgcg catcctgccg
     9481 cgtggcgccc gtgcggttta gcggaaaact gacatagtga cgaagtgatg tctcaagcgt
     9541 gagcagggcg tcaaacgttc tcgccagccc ttccagctct agcgtctctt gctgataatt
     9601 gaggcttgtc agccatgcct gctctggcaa caggttggca aggtcagtca agatagattg
     9661 ccaggcttgc gtcagttcac gctgcgcctg acgttgtaat cgcgcctgtt gctgtcgctg
     9721 acgctgctgc aactgcggta tgttcgccgc aagcgccgtc gtgcgtccgt tttccgccgt
     9781 cagtagcagt tcattaatcc tcccctcctg ccaaaaaacc aaccgggcga tcgtcgcgag
     9841 gcttgctatc agcagcaggg acgcgcccca taccacgcac cacagccgca gacgcgctac
     9901 ataatgttgg cgccgccagg gaagcaaatt gacagaatgc gccatcagcg tatctccccc
     9961 atggctaaac ccagcgcaat cgcaaagcga taaccgtccg gcggaaccgg cggttggcgg
    10021 acggtaacgg cgcgccaggg gtcgaattcg ccttcggcgc ataacgaaat atgttccggc
    10081 acgacggata acgtcgcggc aaggtcatgc agcgtcatcg cctctcgcgc cgatttacgc
    10141 ccccacgcat agcgcgtcgc ccacagccac tggctttcat cgcgccagac cagacattgc
    10201 cgccccgaag gtataaacgg cagcaagcgc tgtaacgcgc aggcatcggg cgttacagca
    10261 gcgatgcgta cattgagcgt ttgcgccagc gttaacagct ctgaaatttc tttgctttgc
    10321 acggcggtaa cgttgaacgc ggggctcagc gcatcgtcct gaaagtcgaa acgcaataag
    10381 tccggatcca tatccagctc acgcgccatc gtttgtgaaa gccatgcgac ttgctcacgt
    10441 tcccgcagac gcatcggcgg atgtggaaaa gcgcgttgca atgtccgatt tgcgggaaaa
    10501 gagagataaa tacggtgacg tagcggcagc tcgcggctcc agggtcgcag tacgtgagcc
    10561 agcgattgcg ggtcaggaat cgtaccctct gccgtggagg cgttcatcag cggcagtcgc
    10621 caccaacgtt gcagggacca gcccgatgcg ccgcgaataa cggcgatggc cagcgcttca
    10681 tgctgctgaa tatgcaatcc tatttgccag gttttaaaag ccataacggt cgatctcctt
    10741 atcacccgtc gcgttaacgg gtatatcaat gcgtctggct tgcctttata ctaccgcgcg
    10801 tttgtttata aactgcccaa atgacactaa atgggaaatc tccagtgaag ttcgtaaagt
    10861 atttattgat ccttgcagta tgttgcatcc tgctgggagc aggctcgatt tatggccttt
    10921 atcgctatat tgagccgcag ctacctgacg tcgcgacatt gaaagatgtg cgtttacaaa
    10981 ttccgatgca ggtttacagc gcggatggcg aacttatcgc gcaatatggc gaaaaacgcc
    11041 gtattcccgt tacgctcgat caaattccgc cggaaatgat caacgccttt atcgccaccg
    11101 aagatagccg cttttatgag catcacggta ttgacccggt aggtattttc cgtgcggcca
    11161 gcgtcgcgct cttctccggt cacgcatcgc agggagcaag taccattacc cagcaactgg
    11221 cgcgaaactt cttccttagc cccgaacgca cgctgatgcg caagatcaag gaagcgtttc
    11281 tggcgattcg tattgagcag ttgctgaata aaaatgagat cctcgaactc tatctgaaca
    11341 agatctatct cggctaccgc gcctatggcg ttggcgcggc ggcacaggtc tactttggta
    11401 agacggtcga ccagcttagt ttaagcgaaa tggcggttat cgccgggcta cctaaagcgc
    11461 cttctacctt taacccgctc tactcgatgg atcgggcggt ggcgcgccgt aacgtagtgc
    11521 tctcacgaat gttaagcgag ggatatatca ctcaggcgca gtacgatcag gcccgtagcg
    11581 aacctatcga cgcaaattat cacgcgccgg aaatcgcctt ctccgcgcct tatctgtcgg
    11641 aaatggtgcg ccaggaaatg tataaccgtt atggcgaaag cgcctatgaa gatggttatc
    11701 gtatttacac gaccatcacc cgcaaagtgc agcaggccgc gcaacaggcg gtgcgtaata
    11761 acgtgctgga ctatgacatg cgccacggtt atagcggccc ggcgaatgtg ctatggaaag
    11821 tgggcgaaac ggcgtgggac agtaaaaaaa ttaccgatac gttgaaagcg ttgccgacct
    11881 acggaccgct gcttcccgcc gtggtcacca gcgctaatcc gcaagaggcg accgctgcgc
    11941 ttgccgacgg tacgtccgtt tcgctacata tggaaggaat gcgttgggcg cggccttacc
    12001 gctcggatac acagcagggg ccgacgccgc gtaaagttac cgatgtcgtc cagacaggtc
    12061 agcaaatctg ggttcgtcag gtggataacg actggtggct ggcgcaggta ccggaagtga
    12121 actccgcgct ggtttcgctt aacccgcaaa ctggcgcggt actggcgctg gtcggcggtt
    12181 tcgattttaa tcagagtaaa tttaaccgcg cgacgcaagc tttgcgtcag gtggggtcga
    12241 acatcaaacc gttcctctac accgccgcaa tggataaagg cctgacgctc gccagtatgc
    12301 tcaacgatgt gccgatttcc cgctgggacg ccggggccgg ttcagactgg cgtccgaaaa
    12361 actctccgcc gcagtacgcc ggaccgattc gtttacgcca ggggctgggg cagtcgaaaa
    12421 acgtggtgat ggtacgcgcc atgcgcgcca tgggcgtcga ctatgcggcg gagtatctgc
    12481 aacgcttcgg cttcccggcg cagaatatcg tgcataccga atcgctggcg ctgggctccg
    12541 cctccttcac gccgatgcag gttgcgcgcg gttatgcggt gatggcgaac ggcggtttcc
    12601 tgatcgaccc gtatttcatc agcaagattg agaacgatca gggcggcgtg atcttcgaag
    12661 cgaaaccgaa aatcgcctgc acggagtgcg atatcccggt catttacggc aatacgcaga
    12721 aatccgacgt gctggaaaac accaatgtgg aagaggtcgc ggtttcgcaa gagcagcaaa
    12781 acagcgccgt accgatgcct gagctggaac aggcaaacca ggcgctggtc gcgcaaaacg
    12841 gcacgcagga gtacgcgccg catgtgatca atacgccgct ggcgtttctg atcaaaagcg
    12901 cgctgaacac caatatcttc ggcgaacccg gctggatggg taccggctgg cgtgcggcgc
    12961 gcgaccttaa acgtcgcgat atcggcggca aaaccggtac gaccaacagc tcgaaagacg
    13021 catggttctc cggctatggt cctggcgtcg tcacttccgt atggatcggc tttgacgatc
    13081 accgccgtga tttaggccgc accaccgctt ccggcgcgat caaagatcaa atctccggct
    13141 atgagggcgg cgcgaagagc gcgcaacctg catgggacgc ctatatgaaa gccgtgctgg
    13201 aaggcgtgcc ggaacagccg ctaacgccgc cgccgggcat cgtcacggtg aatatcgacc
    13261 gcagtaccgg acaactggcg agcggcggta acagccgtga agagtatttc atcgaaggca
    13321 cgcagccgac acaacaggcg gtacacgagg tgggaaccac cattattgat aatggtgaaa
    13381 cacacgaact gttctgatca aaaaaggcgc tccggcgcct tttttattgt gtttagcgga
    13441 tgacggcgaa cggggagaca aactttccgt tggcttgatc aacgccgcgc catcaggcaa
    13501 ttcggccctg cgctttcaac cactcgcgta ccagaaacag cgcgctgacg ttgcgggcct
    13561 cgttaaaatc ggggtcttcc agcagatcca ttaaatgcgc cagcggccag cgtacctgcg
    13621 gcaatggctc aggctcgtcg ccttccagcg actccggata gagatcttcc gccaccacga
    13681 tattcatttt gctggaaaaa taagagggcg ccatgctgag tttttttaag aaggtcaggt
    13741 tatgcgcgcc aaacccgacc tcttctttga gctcccggtt cgccgcttca aaaacggtct
    13801 cgcccgggtc gatcaatcct ttcgagaagc ccagctcata ggattcggtt cccaccgcat
    13861 actcacgaat aagaatcaga tgctcatcaa cgatcggcac aatcattacc gcctcacggg
    13921 ttgatggtcg catacgttca tacacgcgac gcacgccgtt gctgaactcc agatccacgc
    13981 tttctacgtt aaacagtcgg gattgtgcga cggtttccac tttcagaatg gtgggttttt
    14041 gtaatgattt gctcattgtg agaatctttg cagtgtaatc tgtggtcatt gtgcgacata
    14101 ccgcacggtt tcggcaatgc gaattgccgt ttatttacat ttatgtaacg t
//
LOCUS       DAJVSD010000104        14068 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.104, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000104 DAJVSD010000000
VERSION     DAJVSD010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 14068)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14068)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14068
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.104"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            17..205
                     /locus_tag="OQP62_002494"
     CDS             17..205
                     /locus_tag="OQP62_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722022.1"
                     /translation="MQDYFLESLKLQRIDFFLKLVAASECSDEEKGLALQWVSELTDE
                     LMAKIRSHEYSRSMDVIS"
     gene            complement(273..572)
                     /locus_tag="OQP62_002495"
     CDS             complement(273..572)
                     /locus_tag="OQP62_002495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722023.1"
                     /translation="MKRITFSFTLVAIIIALAGCALPDKDGDFGAYVHTCQQYAYGKS
                     YAFENRDFAYKVCKDAAKLWSDEVPGYVIRQIQLHPEIPSEEIKYAAMAGSLGNN"
     gene            complement(681..1559)
                     /locus_tag="OQP62_002496"
     CDS             complement(681..1559)
                     /locus_tag="OQP62_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001251691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722024.1"
                     /translation="MAMSLSCQLILLGLALFFYDWDRDMKKLTGVIAFALLLTACDKP
                     KIDASSDQSMKESIQKVRESLPADKKAQFDDAVKVVAFSQINMRELMQAGTSSGDVYE
                     TKIKSALEGKTGDEVINYAQTIRLEREKREKEQALQEIKELEAKQTSATQAAEKMKAF
                     KVERSRFYFQKEDYGNDQPILDISVENGTDKAVARVFFKGVIASPGRSVPWFSDVFNY
                     KISGGLEPGEKANWKLAPNRYSDWGKLKVPADAIFTVTVIGLEDADGKSIYGDAEFSE
                     RDADRLNQLRDKYLSK"
     gene            2173..3087
                     /locus_tag="OQP62_002497"
     CDS             2173..3087
                     /locus_tag="OQP62_002497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001146827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722025.1"
                     /translation="MPYQLVELSPVANDLEQLGTKEKFWFYFSDDTVNLQLFKYSRLG
                     TGEHWSEKCAAELCHLLNIPHASYDLARYNGRFGVVTQNIIPSGFRMVMGNEVLHSST
                     FDYPGPLQAGEKPVRVREHTVTRVLGCLDRESIKPPPSVYDLTGLNAADVFCGFLMLD
                     ALVSNQDRHHENWAIMLNNETGEQFLCPTYDHAASLGREMLDDERNERLNTKDKNRQI
                     PCFVRKARSELFKAKTDKKPLLTVEAFQHAVEGRVAARDHWLGKLSVLTEDSITDVFN
                     QVPSSCISDSARRFATLMVMENRRRLLE"
     gene            3084..3824
                     /locus_tag="OQP62_002498"
     CDS             3084..3824
                     /locus_tag="OQP62_002498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000185756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIRAN domain-containing protein"
                     /protein_id="HCS1722026.1"
                     /translation="MTNTNSVYVAWQAPDTRDWHVVGNLQERKSGYVFRYTKGALKST
                     KFTKFSGMSDVRETYVSEELFPLFKNRLLSPRRPEYPSFIKWLGFEEDKVNPIDILAR
                     SGGLRSTDQLQIFKKIDVDSDGNFEHFFFLHGLGYLNSLANARVSELKPGQILRLCLD
                     LQNEYDGDAVVVRADKPAEIVGYCPRYLSNDIKKMLLDDPKSITLTVEKISDDAPHNY
                     RLLCKLSGVLSQACQSTLIPQDEFEPIE"
     gene            complement(3859..4896)
                     /locus_tag="OQP62_002499"
     CDS             complement(3859..4896)
                     /locus_tag="OQP62_002499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001419999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HCS1722027.1"
                     /translation="MGKRKKNRAAAMNQIQHKSQTSAEAFSFGDPVPVLDRRELLDYV
                     ECVQMDRWYEPPVSFDGLARTFRAAVHHSSPIAVKCNILTSTYIPHPLLSQQAFSRFV
                     QDYLVFGNAYLEKRTNRFGEIIALEPALAKYTRRGLDLDTYWFVQYGMTTQPYQFTKG
                     SIFHLMEPDINQEIYGLPGYLSAIPSALLNESATLFRRKYYINGSHAGFIMYMTDAAQ
                     NQEDVNNLRNAMKSAKGPGNFRNLFMYSPNGKKDGLQIIPLSEVAAKDEFLNIKNVSR
                     DDMMAAHRVPPQMMGIMPNNVGGFGDVEKASRVFVRNELMPLQKRLQEMNDWLGKEAI
                     QFNTYSLDIVP"
     gene            complement(4896..6662)
                     /locus_tag="OQP62_002500"
     CDS             complement(4896..6662)
                     /locus_tag="OQP62_002500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase ATPase subunit family protein"
                     /protein_id="HCS1722028.1"
                     /translation="MNTTLTPADLDPRRQAMLLYFQGYRVARIAEMLGEKVATVHSWK
                     KRDKWGDYGPLDQMQLTTAARYCQLIMKEHKEGKDFKEIDLLARQSERHARIGKFNNG
                     GNEADLNPNVANRNKGPRRQPEKNVFTDEQIEKLEEIFHSSMFNYQRHWWEAGKTNRI
                     RNLLKSRQIGATFYFAREALIDALLTGRNQIFLSASKAQAHVFKQYIIDFAKEVEVEL
                     KGDPMVLPNGATLYFLGTNARTAQSYHGNLYLDEYFWIPKFQELRKVASGMAIHKKWR
                     QTYFSTPSSLTHSAYPFWSGALFNRGRNKADKVDIDLSHNNLAPGLLCADGQYRQIVT
                     VEDAVRGGCNLFDLDQLRMEYSPDEYQNLLMCEFVDDLASVFPLSELQACMVDSWEVW
                     TDFHALALRPFGWREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGM
                     DFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYENVKAFFPAVREFVYNPNVKNALVL
                     KAYDIISHRRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHADLAWATM
                     HALFNEPLQGESANTSNIVEIF"
     gene            6805..7638
                     /locus_tag="OQP62_002501"
     CDS             6805..7638
                     /locus_tag="OQP62_002501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HCS1722029.1"
                     /translation="MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALIN
                     LEHIKSYLPDSTFNRYGKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKL
                     FTSMEVSPKFADTGKAYLVGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFT
                     AAEETVIELEEIQEDKLSLFARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSAR
                     TEKSLSEQEERLSELETALQAQQTAFNELVNKLSHEDSRQDYRQRATGGNAPADTLTN
                     C"
     gene            7655..8713
                     /locus_tag="OQP62_002502"
     CDS             7655..8713
                     /locus_tag="OQP62_002502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein, P2 family"
                     /protein_id="HCS1722030.1"
                     /translation="MKKNTRFAFNAYLQQLARLNGVAVEELSSKFTVEPSVQQTLEDQ
                     IQQSAAFLTLINVTPVTEQSGQLLGLGVGSTIAGTTDTTAKEREPVDPTLMVDVEYKC
                     EQTNFDTVLTYAKLDLWAKFQDFQVRIRDAIVKRQALDRIMIGFNGVKRAKTSNRSEN
                     PLLQDVNKGWLQKIREDAPDHVMGSTTTGGETTPGAVKVGKGGEYANLDAVVMDAVNE
                     LIDVVYQDDDDLVVICGRELLSDKYFPLVNKEQENSEKLAADMIISQKRMGGLQAVRA
                     PFFPPNALLITRLDNLSIYWQEGTRRRSVIDNPKRDRIENFESVNEAYVVEDYRCAAL
                     VENIQIGDFSAAAAEAGA"
     gene            8717..9367
                     /locus_tag="OQP62_002503"
     CDS             8717..9367
                     /locus_tag="OQP62_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase endonuclease subunit"
                     /protein_id="HCS1722031.1"
                     /translation="MSLSPARQHRLRVQAEQAAREGGSVRHASGYDLMLLQLAEDRRR
                     LKGVQSTVKKAEIKVELLPKYAAWAEGVLAAGGAQQDDVLMYVMLWRIDAGDYAGALE
                     IGRHALRHGWVMPLGNRNVQTVLAEEMADAAQSAMLAATGFDADLLLQTLELTDGLDM
                     PDQSRARLHKAIGAVLSESNPASALNHLNHALQLDPRCGVKKDKQQLERRLRNDSR"
     gene            9463..9927
                     /locus_tag="OQP62_002504"
     CDS             9463..9927
                     /locus_tag="OQP62_002504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HCS1722032.1"
                     /translation="MKFVAPEQAPEQAEIIRNTPFWPDVDLSEFRSMMRTDGTVTQPR
                     LKQVALSAISEVNAELYEFRRRQQMLGYASLAEVPAEQLDGKSERIQHYFNAVYCWAR
                     AMLNERYQDYDATASGVKRGEELAEASGDLWRDARWAISRVQDAPHCTVELI"
     gene            9927..10130
                     /locus_tag="OQP62_002505"
     CDS             9927..10130
                     /locus_tag="OQP62_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HCS1722033.1"
                     /translation="MKVRAHQYDTVDALCWRHYGRTQGVTEQVLKANPGLAEYGPFLP
                     HGLQVELPDIPTTTTVQTVQLWD"
     gene            10134..10349
                     /locus_tag="OQP62_002506"
     CDS             10134..10349
                     /locus_tag="OQP62_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722034.1"
                     /translation="MTLERISAFITYCIAVVLAWLGDLSIKDASTLGGLMIGVLMLAI
                     NWYYKHKAYQLLRDGQISREDYESINR"
     gene            10330..10842
                     /locus_tag="OQP62_002507"
     CDS             10330..10842
                     /locus_tag="OQP62_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001069913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HCS1722035.1"
                     /translation="MNPSIVKRCLVGAVLAIAATLPGFQQLHTSVEGLKLIADYEGCR
                     LQPYQCSAGVWTDGIGNTSGVIPGKTITERQAAEGLISNVLRVERALERCVKQQPPQK
                     VYDAAVSFAFNVGTGNACSSTLVKLLNQRRWADACRQLPRWVYVKGVFNQGLDNRRAR
                     EMAWCLQGAN"
     gene            10844..11221
                     /locus_tag="OQP62_002508"
     CDS             10844..11221
                     /locus_tag="OQP62_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000730949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722036.1"
                     /translation="MKKKLISGLFLMLWMALLIAAMVYPQGIFPVLAASGVWVACLLT
                     WAVIPVALAALIKNGPLWQELRASLLKTITRKENVFTSWVMRLLIVVSLAWTGWAITL
                     VFYLLTVIAFWITRNQMAQQVAA"
     gene            11218..11646
                     /locus_tag="OQP62_002509"
     CDS             11218..11646
                     /locus_tag="OQP62_002509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysB family phage lysis regulatory protein"
                     /protein_id="HCS1722037.1"
                     /translation="MNRLLLVVLALLLAALGWQTWRLADASQTISTQADELQSKSQAL
                     AKSNSQLISLSILTETNNREQARLYAEAEQTSAQLRQRQRRIEELKRENEDLRHWADT
                     PLPADIIRLRERPALTGGAAYRQWLSASDAVSAGAGSTAH"
     gene            11742..12173
                     /locus_tag="OQP62_002510"
     CDS             11742..12173
                     /locus_tag="OQP62_002510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1722038.1"
                     /translation="MNKPQSLRHALNKAVPYVRNNPDKLHLFVDNGSLVATGASSMSW
                     EYRYTLNVVIEDFSGDQNLLMAPVLLWLRDNQPDAINNPALREKLFTFDVDILRNDVC
                     DISLNLQLTERVLVSTDGSVSSVEAVAEPDEPEEMWTVKRG"
     gene            12166..12612
                     /locus_tag="OQP62_002511"
     CDS             12166..12612
                     /locus_tag="OQP62_002511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HCS1722039.1"
                     /translation="MAELQKVDDWLSALLANLEPATRSRMMRQLAQELRRTQQQNIRM
                     QRNPDGSSYEPRRVTARSKKGRIKRQMFAKLRTTKYLKTAASADSASVQFEGKVQRIA
                     RVHHYGLRDRVSRKGPEVRYAERRLLGVNDDVEAMTRDMILQWLAG"
     gene            12681..13259
                     /locus_tag="OQP62_002512"
     CDS             12681..13259
                     /locus_tag="OQP62_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HCS1722040.1"
                     /translation="MNAQLTEIMRLITNLIRTGVVTEVDREHWLCRVKTGDLETNWIN
                     WLTLRAGNARTWWKPSEGEQVVLLSLGGNLETAFALPAVYSNQFAPPSTSADACVTEH
                     PDGGWFEYEPATGRWYVRGIKSMVIEAADNITMKTSEFVLEADRTRINSEVVINGGVT
                     QGGGAMSSNGIVVDAHQHTGVLKGGDTTGGPV"
     gene            13256..13615
                     /locus_tag="OQP62_002513"
     CDS             13256..13615
                     /locus_tag="OQP62_002513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013098787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HCS1722041.1"
                     /translation="MTLYSGMNNTSGKVITDIDHLRQSVRDILLTPQGSRIARREYGS
                     LLSSLIDQPQNPALRLQVMSAVYVALSRWEPRLTLDSITINSHFDGSMVVELTGRRNN
                     GVPVSLSVSTGAENGSD"
     gene            13602..>14068
                     /locus_tag="OQP62_002514"
     CDS             13602..>14068
                     /locus_tag="OQP62_002514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HCS1722042.1"
                     /translation="MAVIDLSQLPAPQIVDVPDFDTLLAERKAEFVALHPKDEQEAVS
                     RTLELESEPVTKLLQENAYRELLLRQRINEAAQAVMAAYAIGSDLDQLAANYNVKRLT
                     VTPADNDAVPPVAAVMESDEALRLRVPAAFEGLSVAGPTAAYEFHARSADGRVA"
BASE COUNT         3316 a         3459 c         3907 g         3386 t
ORIGIN      
        1 tgttatagga ggaaagatgc aggactattt tttggagtct ttgaagctcc agcgcattga
       61 tttttttctt aagcttgtag cggctagtga gtgtagcgat gaagagaagg ggctggctct
      121 gcagtgggtt tctgaattga ctgatgagtt gatggcgaaa attcgaagcc atgaatacag
      181 taggtcgatg gatgtaatca gttgagcttg tttcgttagg acttgataag ggaaccgaaa
      241 aggggcatta agcccctttc tcataagttg atttagttgt tccccaaaga gccggccatg
      301 gctgcatatt taatttcttc gctgggtatt tcaggatgta gttgaatttg cctgatgaca
      361 tagccaggaa cttcgtcact ccacagtttc gccgcgtcct tacagacctt atacgcgaag
      421 tctctattct caaaggcata ggattttccg tatgcatatt gctgacaggt atgaacataa
      481 gctccgaagt cgccgtcttt atctggcaaa gcacatccag ccaaggctat gatgattgct
      541 actaacgtaa aggagaaagt tatacgtttc atggtctctt tctaagcgtt tagcattatt
      601 taactaaggg gtatctgccg tgatttggta gtccctgata tatattctca gggactatgc
      661 tgaagtagat ttaatttcga ttatttagaa aggtacttat ctctaagttg attcagtctg
      721 tcagcatcgc gttctgaaaa ctcggcgtca ccatagatcg atttcccatc tgcgtcttca
      781 aggccaatga ctgtgacggt aaatatagca tcagccggaa ctttaagttt tccccaatca
      841 gagtatctat taggggctaa tttccagttg gctttctcac ctggttccag acctccagaa
      901 attttatagt tgaagacgtc agagaaccaa gggacgcttc ttcctgggct ggcaataaca
      961 cctttgaaga atactctggc aaccgctttg tctgttccgt tttcaacgct aatatccaga
     1021 attggctgat cattgccgta atcctctttc tggaaataaa aacgggaacg ttcgaccttg
     1081 aaggctttca ttttttccgc agcctgtgtt gcagaggttt gtttggcttc cagttctttt
     1141 atttcttgca gagcctgttc tttctctctc ttctcacgct caaggcgaat agtttgtgcg
     1201 taatttataa cctcatcacc agttttacct tccaacgctg acttaatttt tgtttcgtag
     1261 acgtccccag aagacgttcc agcctgcatt agctctctca tgttgatttg gctaaaggca
     1321 acgactttaa ctgcatcatc aaactgagct tttttatctg caggtaagga ctctcttact
     1381 ttttgaatgg actctttcat cgactgatcg cttgatgcat cgatcttcgg tttgtcacaa
     1441 gcagtaagca gcagagcaaa agcaattacg ccagttaatt tcttcatatc cctatcccaa
     1501 tcgtaaaaaa acaaggctaa tcctaacagg attagctggc atgacaaact catagccata
     1561 taggtgtgct gtataaatta gcgggatgag aaagcctgcg cagaccctca tgttgaaact
     1621 tgattttagc tcaaaagagc tgacactaaa taactgcgcg gaataatgct ccacttcggt
     1681 tagcccttgc tgggtaaggc gtggggccgt tttcttcgcc tgatcctgct gtatctggcc
     1741 tacagtatgt tgcccttacg cgacatgcca catgtcagta aacggcaggt gtagcagtat
     1801 tagacgcagc tatttagtgt gtattaagct ggctcatatt tatgactggt ttcaaagttt
     1861 gaccgatttt catgtcatgc atgtctatgc tgcatgagtt cgcatgatcg tttgaggatc
     1921 ggtttggcta agacatgcca gaactggcgg gcttttgctc atgtcatgca ggtgcatgaa
     1981 aaccactaca taaagcgggc aggcgtggcg gggatacgag cgcgcgctaa gtcatataag
     2041 agttatatat tgatttgatt gctggacatg catacagtat cgctctatca tctaataaat
     2101 cttagagtat ttgacaatgt ttggataaaa tggaacctaa cttattcata atccgctaaa
     2161 cagggatgtc agatgccata ccaattggta gagcttagcc ccgtagctaa cgatcttgaa
     2221 cagttaggaa ccaaagagaa gttttggttc tatttctccg atgacactgt aaatttgcag
     2281 ttgtttaagt actctaggct aggtactggc gagcattggt ctgaaaagtg tgctgctgag
     2341 ttatgtcatt tgcttaacat tccacatgct agctatgatt tggcgcgata caatggtcga
     2401 ttcggtgtgg tgactcagaa tatcattcca tctggtttcc ggatggtaat gggaaatgaa
     2461 gtgcttcaca gttcgacatt cgattatcct gggcctttac aagccgggga aaagccggta
     2521 agggtcagag aacacactgt cacaagggta ttgggttgtt tagataggga atctatcaag
     2581 cctcctccga gtgtatatga tctaaccggg ctaaatgcag cagatgtatt ttgtggattt
     2641 ttgatgctcg atgcacttgt gagtaatcaa gatcgccatc atgaaaattg ggcgatcatg
     2701 cttaacaatg aaactggtga gcagtttttg tgtccaacat acgatcatgc cgctagttta
     2761 ggaagggaga tgttagatga tgagcgtaac gaacggctta atactaaaga taaaaatcga
     2821 caaatcccat gttttgtaag aaaagctcgc tctgagctat tcaaagcaaa aactgataaa
     2881 aagcccttgc tgaccgttga agcatttcaa catgcagttg aagggagagt tgccgctcgc
     2941 gaccattggt taggtaagtt gagcgtttta acagaagatt ccattacaga tgtgtttaac
     3001 caagtgcctt catcgtgtat atccgacagt gcacgtagat ttgcaacgtt aatggtaatg
     3061 gaaaatcgca gaaggttact agaatgacta atacaaactc cgtttacgtc gcatggcagg
     3121 caccagatac cagagactgg catgttgttg gtaacttgca agagcgcaaa tcggggtatg
     3181 ttttcaggta taccaaaggt gctcttaaat ctactaaatt tacaaagttt agcggcatga
     3241 gtgatgttcg tgaaacttat gtttcggaag aattgtttcc tctttttaaa aatcgccttt
     3301 tatcaccgag acgtccagag tatccgagtt tcattaaatg gcttggattt gaagaagata
     3361 aggtaaatcc tatcgatatt cttgctcgct cgggaggctt acgaagcact gatcagctgc
     3421 agattttcaa aaaaattgat gttgattctg atggtaactt tgagcatttt ttcttcttac
     3481 atggacttgg ttacttaaat agcttagcta atgctcgtgt atctgaattg aaaccggggc
     3541 aaattttgcg tctttgcttg gatcttcaaa atgaatacga tggggatgct gttgtcgttc
     3601 gtgcagataa accagctgaa atcgttggtt actgccctag gtatttaagt aatgatatca
     3661 agaagatgtt attggatgat ccaaaatcaa tcactttaac ggtcgaaaag attagcgatg
     3721 atgctcctca taactatcgg ttattatgta aattatcagg agtactaagc caagcctgtc
     3781 aatcgacgct gattcctcag gatgagtttg aacctattga gtaaatgaag aaaagccacc
     3841 aaacggtggc ttttcttatt atgggactat atctagcgag taggtattaa actgtatcgc
     3901 ctccttgcca agccaatcat tcatctcctg taatcgcttt tgtagtggca ttagctcatt
     3961 tcggacgaat acacggcttg ccttctccac atccccaaac cccccaacat tattcggcat
     4021 aatccccatc atttgcggtg gcacacgatg cgccgccatc atgtcgtccc ggcttacgtt
     4081 cttgatgttc agaaactcat cctttgccgc cacttctgac agcgggatga tctgaagccc
     4141 gtcctttttg ccgttaggcg agtacataaa caggttgcgg aagttgcccg gacctttggc
     4201 gcttttcatc gcgttgcgga ggttgttcac atcctcctgg ttctgagcgg catcggtcat
     4261 gtacattatg aatcctgcat ggctgccatt aatataatat ttgcgtcgga acagcgtggc
     4321 ggactcgttg agcagggctg acggaatggc agaaagatag ccgggcaggc cgtagatctc
     4381 ctggttgata tcgggttcca tcagatgaaa gatgctgcct ttcgtgaact gatacggctg
     4441 ggttgtcata ccgtattgca caaaccagta ggtatccagg tctaacccgc gtcgggtgta
     4501 ttttgccaga gcaggctcaa gggcgataat ttcaccgaac cggttcgtgc gtttctccag
     4561 gtaggcgtta ccaaatacca gatagtcctg cacaaaacgt gaaaaagcct gctggctgag
     4621 cagcgggtga gggatgtagg tgctggtcag aatgttgcat ttcaccgcaa tcggtgagct
     4681 atgatgcacg gcggcgcgga aggttcgcgc cagtccgtcg aaactcactg gtggctcata
     4741 ccagcggtcc atctgtacgc attccacata gtccagtaat tcgcggcggt ccagaacagg
     4801 aacgggatcg ccgaagctga atgcttcggc tgaagtctgg cttttatgct ggatctgatt
     4861 catcgccgct gcgcggtttt tcttacgctt tcccatcaaa aaatctccac aatattactg
     4921 gtattggcgg actcgccttg cagtggttcg ttaaacagtg cgtgcattgt tgcccaggcc
     4981 agatcggcgt ggctggcttc ttcgctgcgg ctggcttcat aggtcgggcg gttgccactg
     5041 gcggtggtgg cgcgacggat tgccataaat gactgcgcta tgtcggtgtg tccggcgtca
     5101 aactccagac ggcggtggct gataatgtcg taggccttga gtaccagagc gtttttaacg
     5161 ttggggttgt agacaaactc ccggacggca ggaaagaacg ctttcacgtt ctcataaacc
     5221 ccgtgaccga cgcctgtcga gtcaatgccg atataggtca cgttgtactg ctcggtcagt
     5281 tttttgattg catcagcctg ggcgcggaag tccatcccgc gccactggtg acgctcaaga
     5341 atgcgaaact taccgcctgg cacggctggc ggtgccacca ccacgcatcc ggcgctgtcg
     5401 ccgttctgcg taccttttgc cgggtcataa ccgatccaca cctcgcgcca gccaaacggg
     5461 cgcagggcca gtgcatgaaa gtcggtccag acttcccaac tgtccaccat gcacgcctgc
     5521 agttcgctga gcgggaacac ggacgcgaga tcgtccacga actcgcacat cagcaggttc
     5581 tggtattcgt ccgggctgta ctccatgcgt agctggtcga ggtcgaacag gttacagccg
     5641 ccgcgcaccg catcttccac ggtgactatc tggcggtatt gcccgtctgc gcacagcaag
     5701 ccgggggcca gattgttgtg ggacaggtcg atgtccacct tatcggcttt gttgcgccca
     5761 cggttaaaca gcgcaccgga ccagaacgga taagcactgt gtgtaaggct ggatggcgtg
     5821 gaaaaatagg tttgtcgcca ttttttgtga atagccatac cggaagccac tttgcgcagc
     5881 tcctggaatt tcggtatcca gaaatattca tccagataca ggttgccgtg gtaactctgg
     5941 gccgtgcggg cattggtgcc gaggaagtaa agcgtggccc cgttgggaag caccatcgga
     6001 tcgcctttca gctccacctc cacttctttg gcgaagtcga tgatgtactg tttaaagacg
     6061 tgggcctgtg ccttactggc ggaaaggaaa atctggttac gtccggtaag cagggcgtca
     6121 atcagggctt cacgggcaaa gtaaaaggtc gcgccgatct ggcgtgactt cagcaggttg
     6181 cggatgcggt tggtttttcc ggcttcccac cagtggcgct ggtagttgaa catggaggaa
     6241 tggaaaattt cttccagctt ctcaatctgt tcatcggtga aaacgttctt ttccggctga
     6301 cggcgtgggc ctttgttgcg gttggcgacg ttagggttta agtcggcttc gttgccgcca
     6361 ttgttaaact tgccgatccg cgcgtggcgt tccgactggc gcgccagcag gtcaatctct
     6421 ttgaaatctt tcccttcttt gtgctccttc ataatgagct ggcagtagcg tgcggcggtg
     6481 gtgagctgca tctgatccag cggcccatag tcaccccact tgtcgcgttt tttccagctg
     6541 tgaacggttg caactttctc gcccagcatt tcagcaatgc gggctacgcg gtatccctga
     6601 aagtacagca gcatggcctg ccgacgggga tcgagatctg cgggtgtcag tgtggtgttc
     6661 atggcacaaa cctacagcct tgaatgaagg ctttccccgc ctgcggtttg tgtggttgtc
     6721 ggtacaaata ccgcgcattg tttcactgcc cccatcaccg caaccataag gctccagtaa
     6781 gttttttcta acggagcacg gctcatgaca gtgaaagcaa agcgttttcg catcggggtg
     6841 gaaggtgcca ctaccgacgg acgcgaaatc cagcgtgaat ggctggaaca gatggcagcc
     6901 agctacaatc cggcggtgta taccgcgctg attaaccttg agcacatcaa gtcttatctg
     6961 ccggacagca cctttaaccg ctacggcaag gtgacggcgc tgtttgctga agaaatcacg
     7021 gaaggtccgc tggcgggcaa gatggcactg tatgccgacg ttgagccaac ggagtccctg
     7081 gtggagctgg tgaaaaaagg ccagaaatta ttcacctcta tggaagtcag cccgaagttc
     7141 gctgatacgg gcaaagccta cctggtcggc ctggctgcca ctgatgaccc tgccagtctg
     7201 ggcactgaaa tgctgacatt cagcgccagt gcagcccata acccgctggc aaaccgcaag
     7261 cagaatcccg ccaatctctt taccgccgca gaggaaacgg tgatcgaact ggaagaaatc
     7321 caggaggaca agctgtccct gtttgcccgc gtcacggcac tgttcaccaa aaaagagcag
     7381 tccgacgatg cccggttctc tgatgtgcat aaggccgtgg agttggtcgc cactgagcag
     7441 caaaacctga gcgcacgcac cgaaaaatcc ctgtctgagc aggaagaacg tctgtctgag
     7501 ctggagactg ccctgcaggc acagcagaca gcctttaacg aactggtgaa taagctgagt
     7561 catgaagaca gccgccagga ctaccgccag cgtgcaacag gcggtaacgc ccccgctgac
     7621 actctgacca attgctgatg gagcacaaaa cccgatgaag aagaataccc gctttgcttt
     7681 taacgcttac ctgcagcagc tggcgcgtct gaacggtgtt gcagttgaag aactgtccag
     7741 caagttcacc gtcgaaccgt ccgtgcagca gacgctggaa gaccagatcc agcagtccgc
     7801 cgctttcctg acactgatta acgtcacgcc agtgactgag cagtccggtc agttgctggg
     7861 gctgggtgtt ggcagcacca ttgccggaac cactgatacc accgcgaaag agcgtgaacc
     7921 tgtcgatccg acgctgatgg tcgatgtgga atataaatgc gagcagacta actttgacac
     7981 ggtgctgacc tacgcgaagc tggacctgtg ggcgaagttt caggatttcc aggtgcgtat
     8041 ccgtgacgcc atcgtgaaac gtcaggcact ggaccgcatc atgatcggct ttaacggcgt
     8101 gaagcgtgcg aaaacctcca accgtagcga aaacccgctg ctgcaggatg tgaataaagg
     8161 ctggctgcag aaaatccgtg aggatgcacc ggatcacgtc atgggcagca ccaccacggg
     8221 cggtgaaact acaccgggtg cggtgaaagt cgggaaaggt ggcgaatatg ccaacctaga
     8281 cgccgtagtg atggatgccg tcaatgagct tatcgacgtg gtttaccagg acgatgacga
     8341 tctggtggtt atttgcgggc gtgaactgct gtctgacaag tatttcccgc tggtcaacaa
     8401 agagcaggaa aacagtgaaa aactggctgc cgatatgatc atcagtcaga aacgcatggg
     8461 tggcctgcag gccgtgcgtg cgccgttctt cccgccgaat gcgctgctaa tcacccgtct
     8521 ggataacctg tccatctact ggcaggaagg cacccgccgc cgttcagtta tcgacaaccc
     8581 gaaacgtgac cggattgaaa actttgaatc cgttaacgaa gcctatgtgg ttgaggacta
     8641 ccgctgcgcc gcactggtgg aaaacatcca gattggcgat ttcagcgccg ctgcagcaga
     8701 agccggagcg taacctatga gcctgagtcc cgcacggcag catcgcctgc gcgttcaggc
     8761 tgaacaggcc gcccgcgagg gcggcagcgt tcgccacgca tctggctatg acctgatgct
     8821 gctgcaactg gcggaagacc gccgccgtct caagggcgtt cagtccacgg tcaaaaaagc
     8881 ggaaataaag gtggagctgc tgccgaaata tgccgcctgg gcggagggcg tcctggctgc
     8941 cggaggcgct caacaggatg acgtgctgat gtacgtgatg ctgtggcgca ttgatgccgg
     9001 agattatgcc ggggcgctgg agatcgggcg tcatgccctg cgtcatggct gggtgatgcc
     9061 gctgggtaac cgcaatgtgc agaccgtgct ggcagaggaa atggcagatg cagcgcagag
     9121 cgcaatgctt gccgccaccg gctttgatgc cgatctgttg ctgcagacgc tggagctgac
     9181 agacggtctg gatatgccgg accagtcacg ggcgcgtctg cataaagcga ttggcgctgt
     9241 tctgagtgaa agcaatccgg cttccgccct taatcatctc aaccatgcgt tacagctcga
     9301 tccccgctgt ggcgtgaaaa aagacaaaca gcagctggag cgcagactgc gcaatgacag
     9361 ccgctgacag aacgtgcccc cgcgcacggg cggcacgggg tggcgaaagg cactgccaca
     9421 tcaaaacccc gtccaccgcc ctttatttca ggagaaagca gcatgaagtt tgttgcgcca
     9481 gaacaggcac cggaacaggc ggaaatcatc agaaatacgc cgttctggcc tgatgtggac
     9541 ctgtcggagt ttcgcagcat gatgcgcact gatggcacgg tgacgcagcc gcgtttaaag
     9601 caggttgcgc tgtcggcaat ttcggaggtc aacgcagagc tgtatgagtt tcgcagacgc
     9661 cagcagatgc tggggtatgc ctcgctggca gaagtcccgg cggaacaact ggacggcaaa
     9721 agcgagcgca ttcagcacta tttcaacgcg gtttactgct gggcacgcgc catgctcaac
     9781 gaacgttacc aggactatga cgccacggca tccggtgtga agcggggcga agaactggca
     9841 gaagccagcg gtgatttgtg gcgtgacgcc cgctgggcca tcagccgggt gcaggatgcg
     9901 ccgcactgca cagtggagct tatctgatga aagtgcgtgc gcatcagtat gacacggtgg
     9961 acgcgctttg ctggcgtcat tacgggcgca cgcagggtgt cacggagcag gtactgaagg
    10021 caaatccggg gcttgccgaa tacggcccct ttttacctca cgggctgcag gtggagctgc
    10081 cggacattcc gaccaccacc accgtgcaga ccgtccagct atgggactga attatgacgc
    10141 ttgagcgaat cagcgccttt atcacgtatt gcatcgccgt cgtgctggcc tggctgggcg
    10201 atttgtccat caaggatgcc tcaacgctgg gcggcctgat gattggtgtg ctgatgctgg
    10261 ctatcaactg gtactacaaa cacaaagcct accagcttct gcgcgacggg cagatctcgc
    10321 gggaggacta tgaatccatc aatcgttaaa cgctgccttg tcggggccgt gctggctatt
    10381 gctgccacgc tgccgggttt tcagcagctt cacacctccg tggaggggct gaaactgatt
    10441 gccgattacg aaggttgtcg tctgcagccg tatcagtgca gcgcgggtgt ctggaccgac
    10501 ggcattggta atacgtcagg cgtcattccc ggcaaaacca ttacggagcg acaggcagca
    10561 gaagggctga tctccaacgt gctgcgtgtg gagcgggcgc tggaaaggtg tgtgaagcaa
    10621 cagccgccgc agaaggtgta tgacgctgcg gtgtcgtttg ccttcaacgt gggaacgggc
    10681 aatgcctgca gttccacact ggtgaaatta ctcaatcagc ggcgctgggc ggatgcgtgc
    10741 cgacagttgc cgcgctgggt ttatgtgaaa ggtgttttta atcaggggct ggataaccgc
    10801 cgtgcgcggg agatggcctg gtgcttacag ggagcaaact gaaatgaaaa agaaattaat
    10861 cagcggactg tttctgatgt tatggatggc gctgttaatc gcagcaatgg tgtatccgca
    10921 ggggattttt ccggtactgg cagcgtccgg cgtttgggta gcctgtttgc tgacatgggc
    10981 ggtaattccg gtagcactgg ctgcgttaat taagaatggc ccgctctggc aggagttaag
    11041 ggcatctttg ctgaagacaa ttacccgaaa agaaaacgta tttaccagtt gggtgatgcg
    11101 attgctgatt gttgtaagtc tcgcctggac ggggtgggct attaccctgg tcttttatct
    11161 actgaccgtt attgccttct ggatcacccg taatcagatg gcgcaacagg tagcagcatg
    11221 aaccggttgc tgctggttgt gctggcgtta ttactggcgg cgctgggctg gcagacgtgg
    11281 cggctggctg atgccagcca gaccatcagc acgcaggcag acgagctgca gagcaaaagc
    11341 caggcactgg caaagagcaa cagccagctt atcagcctgt ccattctgac tgaaaccaat
    11401 aaccgggagc aggcgcggct ctatgccgaa gcagaacaga ccagcgcaca gctgagacaa
    11461 cgacaacgcc ggatcgagga actgaaacgt gagaacgagg atttacgcca ctgggctgat
    11521 actcctttgc ctgctgacat tatccggctg cgggaacgtc cggcactcac cggaggtgca
    11581 gcttaccgtc agtggttgtc cgcgagtgac gccgtgtcgg ctggagcagg cagcaccgcg
    11641 cactaacggt gatctgaatg cgttgctgga tgaaacggag gccgcctggg cggtctgtgc
    11701 agacaaagtg gacatgatta ttgcgtgtca ggagcgaaac agtgaacaaa ccacaatccc
    11761 tgcgccacgc cctcaataaa gcggtgcctt atgtccgcaa taacccggac aaactgcatc
    11821 tgtttgtgga taacggttcg ctggttgcca cgggggccag ctccatgtca tgggagtacc
    11881 gctataccct gaacgtggtg atagaggatt tcagcggcga ccagaatctg ctgatggccc
    11941 cggttttact gtggcttcgg gataaccagc ccgatgccat caataacccg gcgttacggg
    12001 aaaagctatt cacctttgat gtggatattt tgcgcaacga tgtctgtgat atcagcctta
    12061 atctgcaact gacggaacgt gtgctggtca gcactgacgg cagtgtgtcg agcgttgaag
    12121 ctgtagcaga acccgatgaa cctgaagaaa tgtggacggt gaaacgtggc tgaactgcag
    12181 aaggtggacg actggctgag tgccttgctg gcgaatctgg aaccagccac gagaagccgc
    12241 atgatgcgcc agctggcgca ggaactgcgc cggacacagc agcagaatat caggatgcag
    12301 cgcaatccag atggcagcag ttatgaaccg cgcagggtaa cagcacgcag caagaaaggg
    12361 cgcatcaaac gtcagatgtt tgcaaagctg cgcaccacaa aatacctgaa aactgccgcc
    12421 agcgccgact ctgccagtgt acagtttgaa ggcaaggtgc agcgtattgc ccgtgttcac
    12481 cattacggcc tgcgtgatcg cgtcagtcgc aaaggaccgg aggtccgtta cgcagagcgt
    12541 cgcctgctgg gtgtaaatga tgatgttgag gcaatgaccc gcgacatgat tctgcaatgg
    12601 ctggcggggt gatctttgta tcagcactga tacaagttgc agcactgccg cctttcttcc
    12661 cctgatggca acctttccct atgaacgcac aattaaccga aatcatgcgc cttatcacca
    12721 atctgatccg cactggtgta gtcaccgaag tggaccggga acactggctt tgtcgggtga
    12781 aaacgggcga ccttgaaacc aactggatta actggctgac gctgcgcgcg ggtaatgccc
    12841 gcacatggtg gaaaccatcg gaaggtgagc aggtggtgct actgagtctg ggcggcaatc
    12901 tggaaactgc ctttgcgctg cccgctgtct attcgaatca gttcgcacca ccgtcgacgt
    12961 cggcagacgc ctgcgtgaca gaacatcctg acggtggctg gtttgaatac gaacccgcca
    13021 ccgggcgctg gtatgtcagg ggcatcaaat caatggtcat tgaggccgct gacaacatca
    13081 ccatgaaaac cagtgagttt gtactggagg ctgaccgcac gcgcattaac agcgaagtgg
    13141 tgatcaatgg tggcgttacc cagggcggcg gagcgatgag ttctaacggg atcgtggttg
    13201 atgcgcatca gcatactggc gtcctgaaag gcggcgatac aaccggaggc ccggtatgac
    13261 gctttatagc gggatgaaca ataccagcgg caaagtcatt actgatattg accatctgcg
    13321 ccagtcggtg cgggacattc tgctgacgcc gcagggtagc cgcattgctc gtcgtgaata
    13381 tggttccctg ctgtcgtcgc taatagacca gccacaaaat ccggcattac gcctgcaggt
    13441 catgtcggca gtgtatgtgg cgctgagtcg ctgggagcca cggctgacgc tggattccat
    13501 caccatcaac agccattttg acggttcaat ggtggtggag ctgaccgggc ggcgtaataa
    13561 cggtgtacct gtttcccttt ccgtatcaac aggagcagag aatggcagtg attgaccttt
    13621 cgcagttgcc tgcgccgcag attgtggatg tgccggactt tgatacgttg cttgccgaac
    13681 gcaaggcaga atttgtggcg cttcatccga aagatgagca ggaagcagtg agccgcacac
    13741 tggaactgga atctgaaccc gtcaccaaat tgttgcagga gaacgcttat cgtgagttgc
    13801 ttctgcgcca gcgcattaac gaagccgcgc aggcggtgat ggcggcttat gccataggga
    13861 gcgatctgga ccagctcgct gccaattaca acgtgaaacg cctgacggtg acgcctgctg
    13921 ataatgacgc tgtgccgccc gtcgcggctg tgatggaaag tgatgaagcg ttacgcctgc
    13981 gtgtgcctgc ggcttttgaa gggctttcgg ttgcggggcc aactgccgct tatgaatttc
    14041 atgcccgaag cgccgacggt cgggtggc
//
LOCUS       DAJVSD010000105        13967 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.105, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000105 DAJVSD010000000
VERSION     DAJVSD010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 13967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13967
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.105"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..964
                     /locus_tag="OQP62_002515"
     CDS             <1..964
                     /locus_tag="OQP62_002515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF898 family protein"
                     /protein_id="HCS1722043.1"
                     /translation="ISVLLVFIIYIVSLSFIEHGHPGLGFTLFGLLIAIIPFMAVKGL
                     QYQAMMTSLNGVHFGFQCSMRRAWWYMFALPVLLMVALYIVLYIISLVTIAVGGLVFN
                     IVFLGLLAIIGIGVINGITYSKWMTLFGNGANFGIHRFSIQVNVKTCIRGCVLAMLTL
                     FPFAVVIGYLIAPVFTDMILLSMMGNAQAGGALILQYYGQIMACYFLYFLAIIVVTSY
                     LYVALRNLFLNNLSLANDSIRFHSSVTAHGMLWRLLVVFVISGVTLGLAYPWLKIWLV
                     SWLAQNTQVQGDLDSLELTNDEKPLENSPLMWISRGIMPYFPFI"
     gene            complement(1106..3961)
                     /locus_tag="OQP62_002516"
     CDS             complement(1106..3961)
                     /locus_tag="OQP62_002516"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000416368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HCS1722044.1"
                     /translation="MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESKESFCIMIPPPNV
                     TGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTR
                     HDYGRDAFIDKIWQWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRL
                     YKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLV
                     VATTRPETVLGDTGVAVNPEDPRYKDLIGKFVILPLVNRRIPIVGDEHADMEKGTGCV
                     KITPAHDFNDYEVGKRHALPMINILTFDGDIRESAEVFDTKGEESNVYSSEIPAEFQK
                     LERFAARKAIVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKP
                     AVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDNDGNVYVGRT
                     EDEVRQENNLGADVQLRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSG
                     FDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPL
                     DMVDGISLPELLEKRTGNMMQPQMAEKIRKRTEKQFPNGIEPHGTDALRFTLAALAST
                     GRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEEQDCGFNGGEMTLSLADRWILAEFN
                     QTVKAYREALDNFRFDIAAGILYEFTWNQFCDWYLELTKPVMTGGSESELRGTRHTLV
                     TVLEGLLRLAHPIIPFITETIWQRVKVICGITADTIMLQPFPEYNAAQVDEAALADTE
                     WLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSEEAVRRVNDNRSFLLNLARLESITVL
                     PADDKGPVSMTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEIARIEGKLSNEG
                     FVARAPEAVIAKEREKLDGYAEAKAKLIEQQAVISAL"
     gene            complement(3961..4404)
                     /gene="holC"
                     /locus_tag="OQP62_002517"
     CDS             complement(3961..4404)
                     /gene="holC"
                     /locus_tag="OQP62_002517"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004098129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HCS1722045.1"
                     /translation="MKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGKRVLIACE
                     DEKQAIRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRNSSPRDILISLRTS
                     FADFATAFTEVVDFVPYEETLKQLARERYKAYRVAGFNLNTATWK"
     gene            complement(4541..6052)
                     /gene="pepA"
                     /locus_tag="OQP62_002518"
     CDS             complement(4541..6052)
                     /gene="pepA"
                     /locus_tag="OQP62_002518"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HCS1722046.1"
                     /translation="MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYIS
                     ALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLND
                     TGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFN
                     VPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNV
                     ITRVIGEQQMRELGMNAYLAVGHGSQNESLMSVIEYKGNPSEDARPIVLVGKGLTFDS
                     GGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELKLPINVIGVLAGCENMPGGRAYRP
                     GDVLTTMSDQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHI
                     TGLMSNHNPLAHELIGASEQAGDRAWRLPLGDEFQEQLESNFADMANIGGRPGGAITA
                     GCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLSQFLLNRAGFNGEE"
     gene            6447..7547
                     /gene="lptF"
                     /locus_tag="OQP62_002519"
     CDS             6447..7547
                     /gene="lptF"
                     /locus_tag="OQP62_002519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HCS1722047.1"
                     /translation="MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIP
                     ANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAA
                     MVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF
                     IESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTAL
                     LRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWNTDNDRARAELHWRITLVFTV
                     FMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAV
                     NLIYLALAIGLNLWDTVPVRRLRARFLRKGAV"
     gene            7547..8629
                     /gene="lptG"
                     /locus_tag="OQP62_002520"
     CDS             7547..8629
                     /gene="lptG"
                     /locus_tag="OQP62_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HCS1722048.1"
                     /translation="MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ
                     GNYDALGAGMYTLLSVPKDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQV
                     ALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNF
                     VYIERVKGDEELAGISIYAFNDQRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPK
                     QITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQFNMW
                     SKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYG
                     IPPIVGALLPSASFFLISLWLMLRKS"
     gene            complement(8835..9833)
                     /locus_tag="OQP62_002521"
     CDS             complement(8835..9833)
                     /locus_tag="OQP62_002521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS1722049.1"
                     /translation="MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVARETGERIAQIM
                     EEINYIPNRAPAMLLNAQSYTLGVLIPSFQNQLFADILAGIESVTSGHNYQTLIANYN
                     YNRDSEEESVINLLSYNIDGIILSEKYHTLRTVKFLRSATLPIVELMDIQGDRLDMEV
                     GFDNRQAAFDMVSTMLDKRQRRKILYLGSKDDIRDEQRYHGYCDAMTRRGLAPLRINP
                     RAISSIHLGIQLMRDALTAHPDVDGVFCTNDDIAMGALLWCRERQLAVPEQISIAGFH
                     GLEMGRQMIPSLASVITPRFEIGRRAAQMLLNKIKNNDLNHNTIDLGYQIYHGNTL"
     gene            complement(9897..11021)
                     /locus_tag="OQP62_002522"
                     /pseudo
     CDS             complement(9897..11021)
                     /locus_tag="OQP62_002522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463342.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
     gene            complement(11016..11387)
                     /locus_tag="OQP62_002523"
                     /pseudo
     CDS             complement(11016..11387)
                     /locus_tag="OQP62_002523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463346.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
     gene            11610..11694
                     /locus_tag="OQP62_002524"
     tRNA            11610..11694
                     /locus_tag="OQP62_002524"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11644..11646,aa:Leu,seq:caa)
     gene            11858..13123
                     /locus_tag="OQP62_002525"
     CDS             11858..13123
                     /locus_tag="OQP62_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000772672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HCS1722050.1"
                     /translation="MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRR
                     PSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFET
                     IAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKH
                     DVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARL
                     AAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYR
                     GMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGY
                     DTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRL
                     MVQWWADYLDIIQYEHITPYEYARVCNIK"
     gene            complement(13186..>13967)
                     /locus_tag="OQP62_002526"
     CDS             complement(13186..>13967)
                     /locus_tag="OQP62_002526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000573562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HCS1722051.1"
                     /translation="DFLDPHYGACILHNLAKGIMASHKADVIHRDLKPSNVMVSGGVQ
                     ISNLKITDFGIATLTQELFDEAAASGDLTRSTSGTIKGALPFMSPELMFGKKGKPIEA
                     STDIWPLGAMMFKLLTGDYPFGVYLDAAVNVKTKNRMEWPTFMTANPQYQSLSQDLQK
                     IVDKCLSYDSDKRPTAETLVKACETLCYLSEERHVGRVNNLIQGGISGFIDGTPSNSF
                     FSMESVYGSRYPNTSTRNTVCYSTFDGHPWPRAHPVILWKD"
BASE COUNT         3130 a         3587 c         3730 g         3520 t
ORIGIN      
        1 tattagtgtg ttgttagttt ttattattta tattgttagc ctctctttta ttgaacacgg
       61 tcatcccggt ctcggtttta cgctattcgg cttattaatt gcgattattc cttttatggc
      121 ggtgaaagga ttacagtatc aggcgatgat gacttcgctt aatggcgtac attttggatt
      181 ccagtgttcc atgcggcgcg cctggtggta catgttcgct cttccggtac tcctgatggt
      241 ggcgctttat attgttcttt atattatctc actggtaacc atcgccgtcg gcggtttagt
      301 gttcaatatc gtttttctcg gtttgctggc tattattggg ataggggtca ttaacggtat
      361 tacctacagc aaatggatga ccttgtttgg caatggcgca aactttggca ttcatcgttt
      421 ctcgattcag gttaatgtta aaacgtgcat cagagggtgc gtgttggcaa tgttgaccct
      481 ttttcctttt gctgtcgtga ttggttatct aatcgcgccg gtgttcaccg acatgattct
      541 tttgagtatg atggggaatg cgcaggcagg aggggcgctt attctgcaat attatggcca
      601 gataatggca tgttatttcc tctattttct cgcgattatt gtggtaacca gttacttata
      661 tgtggcgtta cgcaacctgt ttttaaacaa tttgtcactg gcgaacgatt cgattcgttt
      721 tcattcctct gtcactgcac acggtatgct gtggcggtta ctggtggtgt ttgtgatttc
      781 cggcgtgacc ttagggctgg cttatccgtg gttgaaaatt tggctggtga gctggctggc
      841 gcagaataca caggtccagg gcgatctgga ttcgcttgag ttaaccaatg atgagaagcc
      901 gctggaaaac agcccgctaa tgtggatttc tcgtggcatc atgccttact tcccgtttat
      961 ctgatgtaaa aaggccgacg tttacgtcgg cccataattc atgttgtcgg atggtggcgt
     1021 gaatgcctta tccggcctac cgatcgcgcc atgtcaataa gcgaacgtgt aggcctggta
     1081 agcgaagcgc catcaggctt tcagattaca gcgcgctaat aaccgcctgc tgctcaatca
     1141 gcttcgcttt ggcttctgca taaccgtcca gcttctcacg ctctttggcg atcaccgctt
     1201 ccggcgcgcg ggcaacgaaa ccttcgttgg acagtttgcc ttcgatacgg gcaatctcgc
     1261 cttcgatttt cgccacttct ttcgccagac gcgccagctc atcttctttg ttgatgaggc
     1321 ccgccatcgg gattagcagt tcggcaccgt cgatgatttt ggtcatggaa accggacctt
     1381 tgtcatcggc tggcagcacg gtgatgcttt ccagacgcgc caggttcagc aggaagctac
     1441 ggttgtcgtt aacacgacga acggcttctt cactacagcc gcgcagcagc agttccagcg
     1501 gtttgcccgg ggcgatgttc atttccgcac gaatgttacg tacggcaacg atcgcctgct
     1561 tcagccactc ggtatcggcc aacgcggctt catccacctg cgcggcgtta tattccggga
     1621 acggctgcag cataatggta tcggcggtaa tgccacagat aaccttcacg cgctgccaga
     1681 tggtttcggt gatgaacgga atgatcgggt gcgccagacg cagcaaacct tccagcacgg
     1741 tgaccagcgt atggcgggtg ccacgcagtt cagactcgga acccccggtc attaccggtt
     1801 tggtcagctc cagataccag tcgcagaact ggttccaggt gaactcgtac aggatgcctg
     1861 cggcgatatc gaagcggaag ttatccagtg cttcgcggta ggctttaacg gtctggttga
     1921 attccgccag gatccagcgg tccgccagcg acagggtcat ttcgccgccg ttgaagccgc
     1981 aatcctgctc ttcagtgttc atcagcacaa agcggctggc gttccacagc ttgttacaga
     2041 agttacggta gccttccaga cgcttcatat cccagttgat gtcgcggccg gtcgaggcta
     2101 gcgccgccag ggtaaagcgc agggcgtcgg tgccgtgcgg ctcgatgccg ttcgggaact
     2161 gcttctcggt acgcttgcgg attttctccg ccatctgcgg ctgcatcatg ttgccggtgc
     2221 gtttctccag cagttccggc agggagatgc cgtccaccat atccagcggg tcgataacgt
     2281 tacccttgga tttggacatc ttctggcctt cgtcgtcgcg aatcagaccg gtcatgtaga
     2341 cagtatggaa cggcacctgc ggcttgccgt tttcatcttt gatgaagtgc atggtcatca
     2401 tgatcatgcg ggcaatccag aagaagatga tatcgaagcc ggacaccatc acgctggtgg
     2461 gatggaactg acgcagggcg tcggtgtttt ctggccagcc gagggtggag aaggtccaca
     2521 gcgcggagga gaaccaggta tcaagaacgt cttcgtcctg acgaagctga acgtcggcac
     2581 cgaggttatt ttcctgacgc acttcgtctt cggtacggcc aacgtagacg ttgccgtcgt
     2641 tgtcatacca tgccgggata cggtgacccc accacagctg acgagagata caccagtcct
     2701 gaatatcgcg catccaggag aagtacatgt tttcgtactg cttcggcacg aactgaatgt
     2761 cgccgttttc aaccgcttcc accgccggtt tcgccagcac gtctgcacgg acgtaccact
     2821 ggtcggtcag catcggttcg ataactacgc cgccacggtc gccgtaaggg acggtcagat
     2881 cgtgcggttt aatttcttcc agcaggccca gcgcgtcaac ggcagcaacg atggccttac
     2941 gggcagcaaa gcgttccagc ttctggaact cagccggaat ctcgctggaa taaacgttag
     3001 actcttcacc tttggtatcg aacacttccg cgctttcgcg aatgtcgcca tcaaaggtca
     3061 ggatgttgat catcggcagg gcgtgacgtt tcccgacttc atagtcgtta aagtcgtgcg
     3121 ccggggtgat cttcacgcag ccggtacctt tttccatatc ggcgtgttcg tcgcccacaa
     3181 tcggaatgcg gcggttaacc agcggcagaa taacgaattt gccaataaga tccttataac
     3241 gcggatcttc cgggttcacg gccacgccgg tatcgcccag tacggtttcc ggacgggtgg
     3301 tggcgacgac caggtaatct ttaccgtctg cggttttcgc gccgtcggcc agcggatagc
     3361 ggatgtgcca catcgagcct ttggactcgc ggttttccac ttccaggtca gagatggcgg
     3421 tgcgcagctt cggatcccag ttcaccaggc gtttgccacg gtaaatcagg tcttctttgt
     3481 acaggcggac aaagacttct ttcacggcat tggaaaggcc ttcgtccatg gtgaagcgct
     3541 cgcgctccca gtcaacggag ttgccgagac ggcgcatctg acgggtaatg gtgccgccgg
     3601 attccgcttt ccactgccag attttgtcga taaacgcatc gcggccgtag tcgtgacggg
     3661 ttttaccttc ttcagcggca atcttgcgct caaccaccat ctgggttgcg atcccggcgt
     3721 ggtcggtgcc gacctgccac agggtgtttt taccctgcat acgctggtaa cggatcatgg
     3781 tatccatgat ggtttgctgg aaagcatgtc ccatatgcaa actgccggtg acgttcggcg
     3841 gcgggatcat gatgcagaag gactctttgc tttcgtcgcc gttaggcttg aaatagccct
     3901 gcttttccca gtgctcgtaa agcggctgtt cgatatcttg ggggttatat gtcttttcca
     3961 ttatttccag gttgccgtat tcaggttaaa accagccacg cggtaggctt tgtagcgttc
     4021 gcgcgccagt tgtttcaaag tttcttcgta agggacgaag tctaccactt ctgtgaaagc
     4081 ggtggcaaaa tctgcaaagc ttgtacgcag gctgattaaa atatcgcgcg ggctgctgtt
     4141 gcgtttttgc ggccaggcga tttcaaccgg cgcgccgccg cgtgggcctt cgcctgccag
     4201 attgtgcggg acaaaacttt ccgccggtct tgcccacagc gcttcatcca gccgaatggc
     4261 ctgcttctca tcttcgcagg cgatcagcac gcgcttgcca gcgcgccaac gttctgcggc
     4321 aatttcacac accagttgtt caacggcgct taaaccgttg acggtggtgt cattgtccag
     4381 aagatagaac gtcgcattct tcatatatga ggcttcttgt ggtggattta aatgcgttgc
     4441 catgatgcac cccgtaggcc ggataagcgt ggcgccatcc ggcaaaacgc ctgatggtgg
     4501 cgctaatgcg ccttatcagg cctacggggt aatctcaaac ttactcttcg ccgttaaagc
     4561 ccgcacgatt gagcaggaac tgcgacagca gcgctaccgg acgaccggtg gcacctttgg
     4621 ctttaccgga acgccaggcg gtaccggcga tatccaggtg cgcccagttg tacttacggg
     4681 taaagcgcga caggaagcag cccgcggtga tagcgccgcc aggacgacca ccaatgttcg
     4741 ccatatccgc aaagttggac tccagttgtt cctggaactc atcgcccagc ggcagacgcc
     4801 acgcgcggtc gcccgcttgc tcggacgcgc cgatcagttc atgcgccagc gggttatggt
     4861 tcgacatcag accggtaatg tgatggccca gcgcaatcac gcaggcgccg gttagcgtcg
     4921 cgacgtcaat gaccgcttcc ggttcgaagc gctcaacgta ggtcagcacg tcgcacaaaa
     4981 ccagacggcc ttcggcgtcg gtgttcagga cttcaacggt ttgatcagac atagtggtca
     5041 gcacgtcgcc agggcgataa gcgcgtccgc ccggcatgtt ttcacagccc gccagtacgc
     5101 cgataacgtt aatcggaagc ttaagctcgg cgaccatacg catcacgccg taaaccgccg
     5161 ccgcgccgca catgtcgtac ttcatctcgt ccatcccttc agatggcttg atggagatgc
     5221 cgccggagtc gaaggtcagg cctttaccta ccagcacgat cgggcgcgcg tcttcggacg
     5281 gattgccctt gtactcaatc accgacatca gcgattcatt ctgcgaaccg tggccgaccg
     5341 ccagataagc gttcataccc agttcgcgca tttgctgttc gccgatcacg cgggtgatga
     5401 catttttgct gtagctgtcg gccaactggc gcgcctgtga cgccaggtag gcggcgttac
     5461 agatattggg cggcatgttg ccgagatctt tcgcagcctt aatcccggcg gcgatggcca
     5521 gaccgtgctg aatggcgcgt tcgccgctgg tgagctcacg gcgggtcggc acattaaaga
     5581 ccatcttacg tagcgggcgg cgcggctcgc tcttgttggt cttgagttga tcaaagctat
     5641 aaagcgtctc tttggccgtt tcgacggcct gacgcacttt ccagtagttg ttgcggcctt
     5701 taacgtgcag ttcggtcagg aaacagacgg cttccatcga accagtatca ttcagagtat
     5761 ttatcgtttt ctgaataacc tgcttatact gacgttcatc aagctcgcgc tctttgccgc
     5821 aaccaatgag gaggattcgc tcggaaagaa cgttaggaac atggtgcagc aacagagtct
     5881 gccccggttt tccttccagt tcgccgcgac gcagcaatgc gctgatgtat ccgtcgctaa
     5941 ttttgtcgag ctgttctgca atcggagaaa ggcgacgcgg ttcaaagacg cccacgacaa
     6001 tgcaggcact ccgctgtttc tccgggctac cgctttttac actgaactcc atgcactatg
     6061 ctcctgaatc ttaaagacaa cagtggtggc tacagctata ctcgtcgtct ttcaagttgc
     6121 agatgcgttg gctgcgcctg ctcacccctg tcgcttacct gatgtaagct ccggggctcc
     6181 acagtcctgc cgcctgcctg caactcgaaa tccattagag tatagaaatt gaaagctttc
     6241 gtaactcata tccgctgttg cggtgacttc gtgttaatct taacgttatt acggcattgg
     6301 cacgtcagaa caagttctga gaggtgaatc cgctgagtat aatgatctta gcgatgattt
     6361 cgacgactca agagaataaa tgacgtttaa gccatgaaac aagctaaatt ccagcaaaaa
     6421 aatggttttt tacgggcgta tttaaagtga taatcataag atatctggtg cgggagacgc
     6481 tcaaaagcca gctggcgata ctcttcatct tacttttgat cttcttttgt caaaagttag
     6541 tgaggattct cggcgcggcg gttgacggcg atattcccgc aaatctggtg ctctcgcttc
     6601 tggggctggg cgtaccggaa atggcgcagc tcatcctgcc tttaagcctg ttcctggggc
     6661 tgctgatgac gctgggcaaa ctgtataccg aaagtgaaat tacggtcatg cacgcctgtg
     6721 ggttgagcaa agccgtgctg gtaaaggccg ccatggtact ggcgttattt accggtatcc
     6781 ttgcggcggt taacgtgatg tgggccggcc cctggtcgtc aaaacaccag gatgaagtgc
     6841 tggcggaggc gaaagcgaac cccggtatgg cggcgttggc gcaggggcaa ttccagcagg
     6901 cgaccaacgg cagctcggtg ctgtttatcg aaagcgttga cggcagcgac ttccacgatg
     6961 ttttcctggc gcaaattcgt cctaagggca atgctcgtcc ttctgtggta gtggccgatt
     7021 ccggacacct tactcagttg cgcgatggtt cccaggttgt caccttaaac aaagggacgc
     7081 gttttgaagg gacggcgttg ctacgcgatt ttcgcatcac cgacttccag aactatcagg
     7141 cgattattgg tcatcaggcc gtggcgctgg acccgaacga taccgaccag atggacatgc
     7201 gcacgctgtg gaataccgac aacgatcgcg ctcgcgccga gctgcactgg cgtatcacgt
     7261 tagtctttac cgtatttatg atggcgctga tggtcgtgcc gctcagcgtg gtgaatccac
     7321 gtcaggggcg cgtcttgtct atgttgcccg ctatgctgct ttatctgctg ttcttcctga
     7381 tccagacctc cattaaatcg aatggcggta aaggcaaact ggacccggtt atctggatgt
     7441 gggcggtcaa cctgatctat ctggcgttgg cgattggttt aaacctgtgg gatacggtgc
     7501 cggttcgccg cctgcgtgcc cgttttctgc gtaaaggagc ggtataatgc agccatttgg
     7561 tgtgcttgac cgctatatcg gtaaaaccat ttttaccacc atcatgatga cgttgttcat
     7621 gctggtgtcg ctctccggga tcatcaagtt tgtcgatcag ctgaaaaaag cggggcaggg
     7681 taactacgac gcgctgggcg cgggtatgta caccctgctc agcgtaccta aggatatcca
     7741 gatcttcttt cctatggcgg cgctgcttgg cgcgctgctg gggctgggga tgctggcgca
     7801 gcgtagcgaa ctggtggtga tgcaggcatc gggtttcacc cgtatgcagg tggcgctgtc
     7861 ggtgatgaaa acggctatcc ccctggtgct gttaaccatg gcgatcggcg aatgggtcgc
     7921 cccgcagggc gagcagatgg cgcgtaacta tcgtgcgcag gcgatgtatg gcggctcgct
     7981 gctttccacc cagcaaggtc tgtgggcgaa agacgggaat aactttgtct atattgaacg
     8041 ggtgaagggc gacgaggagc tggccggcat tagtatttac gctttcaacg atcagcgtcg
     8101 tttgcagtcg gtgcgttacg ccgcttcggc aaaattcgac ccggagcata aggtctggcg
     8161 tttgtcgcag gtggatgagt ccgatctgca aaacccgaaa cagatcaccg gttcgcagac
     8221 ggtgagcggc acctggaaaa cgaatctgac gccggataag ttaggcgtgg tggcgctgga
     8281 cccggatgcg ctttccatca gcggtctgca taactacgtt aaatatctga agtcgagcgg
     8341 acaggacgct ggacgttatc agttcaatat gtggagtaaa atcttccagc cgctctccgt
     8401 ggcggtgatg atgctgatgg cgctgtcgtt tattttcggg ccgctacgta gtgtgccgat
     8461 gggcgtgcgt gtggtgacgg ggattagctt cggcttcgtc ttttacgtcc tcgaccagat
     8521 ttttggcccg ctgacgctgg tatacggcat tccgccgatt gtcggcgctc tgctgccgag
     8581 cgcgtctttc ttcctgatta gcctgtggct aatgctgcgt aagtcgtaat cacagtaatc
     8641 gtaggcctga tggcgctgtg cttttcaggc ctactccgga cccgtaggcc ggataaggcg
     8701 ttagcgccgc catccggcag acagcttggt attcctcgaa tgatgtagcg cgtaacctga
     8761 cgcgtggcgc ttttggctac gcgttaagca caggcaagct gcgggaaaga gcataagcgc
     8821 agtagttcaa aaagttataa tgtgttgccg tgataaatct gataacccaa atcaatcgta
     8881 ttatggttga gatcgttatt tttaattttg ttgagcaaca tctgcgcggc tctgcgcccg
     8941 atctcaaaac gaggggtaat tacgctggcg aggctcggta tcatttgcct gcccatctcc
     9001 agaccgtgga agccggcgat ggagatctgc tccggtacgg ccagttgacg ctcgcggcac
     9061 cacagtagag cgcccattgc gatatcgtca tttgtacaaa agacgccatc cacgtccggg
     9121 tgcgcagtaa gcgcatcacg cattagctgt atccccagat ggatagagga gatagcgcgg
     9181 ggattgatgc gcaacggcgc cagcccccgg cgcgtcatcg catcgcagta gccgtgataa
     9241 cgctgctcat cacggatatc gtcttttgaa cccagataga gaattttccg ccgctggcgt
     9301 ttatccagca tggtgctgac catatcaaag gcggcctgac ggttatcaaa ccccacctcc
     9361 atatctaagc gatcgccctg gatatccatg agttctacaa tcggaagggt agctgagcgc
     9421 aggaatttga cggttctgag ggtatgatat ttttctgaaa gaataatgcc gtcgatattg
     9481 taagacagta aattgataac ggactcttct tccgaatcgc gattgtaatt gtaattcgca
     9541 atgagagttt ggtagttatg acccgacgtt acggattcaa tcccggcgag aatgtcggca
     9601 aacaactgat tctgaaaaga ggggatcagc acgcccagag tgtaactttg cgcgtttaac
     9661 agcatagcag gcgcgcgatt tggtatgtag ttaatttcct ccatgatctg cgcaatacgc
     9721 tcgccggttt ccctggcgac ttttttcggc gagcggatgt aacggctcac cgtcattttt
     9781 gtcacgccag caagcgtagc gatatcctgc aaagaaattc tgtgattcct catgttttct
     9841 ccagtaccgg gggcgggaac gtcgccccca tggttaattg ggctgcggat gatgaattaa
     9901 tgcagaaccg cattcagcgc cagtacgccc agcaacccca tgacagaaat caatgtttcc
     9961 ataacggtcc aggtgcgtag ggtttccccg acgctaagat taaaataccc tttaaacagc
    10021 caaaaaccgg gatcgttaac atgtgatgca ataacgcttc ccgcgcctgt cgccagtacc
    10081 attaacgccg gatcggcgtg ggttacgtta ataatcggca atacgacgcc cgctgtggtt
    10141 atcgcggcca cggtcgcgga acctaacgca atacgcagca cggcggctac cgtccagcac
    10201 attaataacg gagatagcga ggtgccggtc attaattgcg agatatattg acccacgccg
    10261 ctatccacca gcacttgctt aaacgcgccg ccgcccgcga tgataaaaac aatcatcgca
    10321 atagcgccaa tggactcgcc gacgatatcc atcacctgct caaccgtacg tccattgcgt
    10381 cgccccagcg taaaaatggc gatgataatg gcaataaaca acgccactgc tggattaccg
    10441 ataaattcga agaaaacccg cacggcattc gtttttggca gcgtgatttc acataccgct
    10501 gcgatggcca tcagaatgac cgggatcacg gcggcaaaaa tactgttcca gaatgacggc
    10561 atctcctctt cactgaatag atgaggatta aataatcctt caggcggcgc tttttcaaat
    10621 cgcgccagca attttgaaaa cagagggccg gcaacaatca cggtcggtat ggtaatgatt
    10681 aacccataca gcagggtcgt accgagattt gcctcaaaaa ttgtcgcaat agcggtaggg
    10741 ccgggatgcg gcggcaggaa gcagtgcgta acggataagg cggcgaccat tggaaccccg
    10801 acatacagca atggcagtcc cgatgaggcc acaattgtaa aaacgagcgg caacagcagt
    10861 acgaatccga cttcaaaaaa cattgccagg ccgacgataa gcccggtgat caccagcgcc
    10921 cattgcacgc gttttttgcc gaacgtatta atgagcgtcg tcgcaatgcg ctgcgcggcg
    10981 ccggtatcgg aaattaatct tcccagcatc gcgccaaaac cgccacgatt gaggatagtg
    11041 ggcactgccc cttccaggca gttaatttga ttgccgctga tacaggcatc gcagtgtccg
    11101 cagctgcgcg ccgtccagcc gattccaacg cgctggccga cttttagtcc cttatcctgt
    11161 gccgcgctac cgagtgcggc cacccgaccg atgacctcgt gtccggcaac cagagggtat
    11221 tgagagaacc cccattcatt gtcgatcatc gacagatcgg aatggcagat cccgcagtag
    11281 tcgacccgta cctcgacatc ttccggttgg agttctcccg cgtcatattc atagagttcg
    11341 agctcgccgc ccgcctcttt ggcggcgtag ctttttatta tcgtcattgt gcttccctta
    11401 atgtggtgtt gaactgaaaa gtgtagagca tggaggcaag ggacgcccgg cgttaatctg
    11461 ctggagaagg cgggaagtag cctgattatt ctatttaatc ctcaacgctg ctgaaatttt
    11521 cagcacttag cgatacaggt gtatgctcgt gcttgcatgg cggcgtatga caggtataat
    11581 ccacaacgtt ttccgcatac ctcttcagtg ccgaagtggc gaaatcggta gacgcagttg
    11641 attcaaaatc aaccgtagaa atacgtgccg gttcgagtcc ggccttcggc accattagta
    11701 cttccaagac catccgagaa agtccaatta tcccttaaaa atcaatgatt gaagcgattt
    11761 ttacgtcctg agtcgtccga ggttgtccgt tgaaatccgg aagtcattgg gggcataatt
    11821 gggggcatct taacttcgat tagaaatgtg cccccaaatg aagctcaacg ccagacaggt
    11881 cgagaccgca aagccaaaag acaaaaccta caaaatggcc gatggcggcg gtttgtacct
    11941 tgaggtttcg gccaagggat ccaaatactg gcgcatgaaa tacagacgcc cctctgacaa
    12001 aaaagaggat cgcctcgctt ttggtgtttg gcctactgtg acacttgctc aggcaagagc
    12061 aaagcgcgat gaagccaaaa agttgctagt gcagggcatt gatccaaaaa ccgaacagaa
    12121 agaggctcag gccgagaact cgggggcgta tactttcgaa actatcgctc gtgaatggca
    12181 tgccagtaac aagcgctgga gcgaagacca tcgatcgcgc gttcttcgct atcttgaact
    12241 ttatattttc cctcatatcg gttcgtccga cattcgccag ctcaaaacca gtcacctgtt
    12301 agccccgatc aaaaaagttg atgccagtgg taaacacgac gtcgctcagc gcctgcaaca
    12361 gcgcgtcacg gctattatgc gttatgccgt acagaacgat tacatcgact ctaatccagc
    12421 cagtgacatg gccggtgcgt tatcgactac caaagcacga cactatccag ccttaccttc
    12481 tagccgtttc cctgagtttc ttgctcgcct tgctgcatat cgtggccgtg taatgacacg
    12541 gattgctgtc gagctttcct tactaacttt tgtacgttcc agcgagttac gtttcgcgcg
    12601 ttgggacgag ttcgacttcg ataaatccct ttggcgcgta ccggcaaaac gagaagaaat
    12661 taagggtgtg cgttattcgt accgtggcat gaagatgaaa gaggagcata tcgttcctct
    12721 cagtcggcag gcgatggttt tgttagagca gctcaagcag attagtggtg ataaagagct
    12781 gttgtttccg ggggatcacg acgcaactaa ggttatgagc gaaaacacgg taaatagcgc
    12841 attgcgtgcg atgggttatg acacaaaaac cgaggtctgc gggcatgggt ttcggacgat
    12901 ggcgcgtggt gctttgggtg agtcaggatt atggagcgat gacgcgatag agcgtcagtt
    12961 aagccattct gagcgtaaca atgtgcgtgc tgcctatatt cacacttcag agcatttgga
    13021 tgagcgtcgt ttgatggtgc agtggtgggc tgattatctc gatattattc agtatgagca
    13081 tattacacct tatgaatatg caagagtctg caacataaaa tgaatgatat ttatagatga
    13141 taatttaatg gattaaaata ggcacaatta cttgtgccta ttaattcaat ctttccaaag
    13201 aattacaggg tgtgctctag gccatgggtg tccatcaaaa gtggaataac aaacagtatt
    13261 tcttgttgag gtgtttgggt acctcgaacc gtatacactt tccatactaa aaaaggagtt
    13321 agaaggtgtc ccatcaataa atccacttat ccctccttga ataagattat tgacgcgacc
    13381 gacatgacgt tcttcggata aataacaaag ggtttcacat gccttaacaa gcgtttcagc
    13441 tgtaggcctc ttgtccgagt cataacttaa gcacttatct acaatttttt gtagatcttg
    13501 tgataaactt tgatattgtg gattggcagt cataaaggtt ggccattcca ttctattttt
    13561 tgttttaaca ttaacagcag catctaaata aacgccaaat ggatagtctc ctgttaataa
    13621 tttaaacatc attgcaccta atggccaaat atcagttgat gcttctatag gtttaccctt
    13681 tttaccaaac attaattcag gagacatgaa gggtaaagca ccttttatcg taccagaggt
    13741 cgatcttgtt aggtcaccac tggcagcagc ttcatcaaaa agttcttgtg ttagcgtagc
    13801 tattccaaaa tctgtaattt ttagattcga aatttgtact ccgccagaca ccattacatt
    13861 actcggtttt aaatctctat gaataacatc tgctttatga gatgccatta ttcctttagc
    13921 aaggttatgt agtatacaag cgccataatg tgggtctaaa aaatcaa
//
LOCUS       DAJVSD010000106        13806 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.106, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000106 DAJVSD010000000
VERSION     DAJVSD010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 13806)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13806)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13806
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.106"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..942)
                     /gene="mrdB"
                     /locus_tag="OQP62_002527"
                     /gene_synonym="rodA"
     CDS             complement(<1..942)
                     /gene="mrdB"
                     /locus_tag="OQP62_002527"
                     /gene_synonym="rodA"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004885876.1"
                     /note="rod shape-determining protein RodA; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase MrdB"
                     /protein_id="HCS1722052.1"
                     /translation="MTDNPNKKTFWDKIHIDPTMLLILLALLVYSALVIWSASGQDIG
                     MMERKIGQIAMGLVVMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRW
                     LDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTAIALVLIFMPTLLVAAQPDL
                     GTSILVALSGLFVLFLSGLSWRLIGVAIVLIAAFIPILWFFLMHDYQRQRVMMLLDPE
                     TDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVG
                     ILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLIL"
     gene            complement(945..2846)
                     /gene="mrdA"
                     /locus_tag="OQP62_002528"
     CDS             complement(945..2846)
                     /gene="mrdA"
                     /locus_tag="OQP62_002528"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-transpeptidase MrdA"
                     /protein_id="HCS1722053.1"
                     /translation="MKRQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQI
                     LRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTL
                     DALRSVVDLNDDDIAAFKKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG
                     YKRRYYPYGSALTHVIGYVSKINDKDVERLDRENKLANYAATHDIGKLGIERYYEDIL
                     HGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVIVT
                     DPRTGGVLSLVSMPSYDPNLFVDGISSKDYSGLLNDPNTPLVNRATQGVYPPASTVKP
                     YVAVSALSAGVITRNTSLFDPGWWQLPGSEKRYRDWKKWGHGHLNITKSLEESADTFF
                     YQVAYDMGIDRLSEWMGKFSYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIP
                     VGIGQGYWTATPIQMSKALMILINDGVVKVPHLLMSTAENGKQVPWVQPHEPPVGDIH
                     SGYWEIAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAE
                     RLRDHKLMTAFAPYNNPQVAVAIILENGGAGPAVGTIMRQILDHIMLGDNNTHLPAEN
                     PVVAAAEDQ"
     gene            complement(2877..3344)
                     /gene="rlmH"
                     /locus_tag="OQP62_002529"
     CDS             complement(2877..3344)
                     /gene="rlmH"
                     /locus_tag="OQP62_002529"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HCS1722054.1"
                     /translation="MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRG
                     KNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLANELERWKQDGRDVSLLI
                     GGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE"
     gene            complement(3348..3665)
                     /gene="rsfS"
                     /locus_tag="OQP62_002530"
                     /gene_synonym="rsfA"
     CDS             complement(3348..3665)
                     /gene="rsfS"
                     /locus_tag="OQP62_002530"
                     /gene_synonym="rsfA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007373852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HCS1722055.1"
                     /translation="MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTS
                     SRHVMSIADHVVQSSRAAGMLPLGVEGENAADWIVVDLGDVIVHVMQEESRRLYELEK
                     LWS"
     gene            complement(3994..4602)
                     /locus_tag="OQP62_002531"
     CDS             complement(3994..4602)
                     /locus_tag="OQP62_002531"
                     /EC_number="3.1.3.73"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin/alpha-ribazole phosphatase"
                     /protein_id="HCS1722056.1"
                     /translation="MRLWLVRHGETEANVAGLYSGHAPTPLTEKGIGQAKTLHTLLRH
                     APFDRVLCSELERARHTARLVLEGRDTPQHILPELNEMYFGDWEMRHHRDLTHEDAES
                     YAAWCTDWQNAVPTNGEGFQAFTRRVERFISRLGAFSDCQNLLIVSHQGVLSLLIARL
                     LAMPAASLWHFRVEQGCWSTIDICEGFATLKVLNSRAVWRPE"
     gene            4699..5793
                     /locus_tag="OQP62_002532"
     CDS             4699..5793
                     /locus_tag="OQP62_002532"
                     /EC_number="4.1.1.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine-phosphate decarboxylase"
                     /protein_id="HCS1722057.1"
                     /translation="MALFNSAHGGNIREAATVLGISPDQLLDFSANINPLGMPVSVKR
                     ALIDNLDCIERYPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGLKPRRAI
                     IVTPGFAEYGRALAQIGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTG
                     LLPERQLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFY
                     AIPGLRLGYLVNSDDAAVARMRRQQMPWSVNALAALAGEVALQDSAWQQATWHWLREE
                     GARFYQALCQLPLLTVYPGRANYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSR
                     YYRVAIRSAAQNERLLAALRNVLTGITPAD"
     gene            complement(5768..6409)
                     /gene="nadD"
                     /locus_tag="OQP62_002533"
     CDS             complement(5768..6409)
                     /gene="nadD"
                     /locus_tag="OQP62_002533"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HCS1722058.1"
                     /translation="MKSLQALFGGTFDPVHYGHLKPVETLANLIGLSRVIIMPNNVPP
                     HRPQPEASSAQRKYMLELAIADKPLFTLGERELQRNAPSYTAQTLKAWREEQGPEAPL
                     AFIIGQDSLLNFPTWHDYDTILDNTHLIVCRRPGYPLEMTQAQHQQWLEQHLTHTPDD
                     LHQLPAGKIYLAETPWLNISATLIRERLEKGESCDDLLPENVLNYINQQGLYR"
     gene            complement(6411..7442)
                     /gene="holA"
                     /locus_tag="OQP62_002534"
     CDS             complement(6411..7442)
                     /gene="holA"
                     /locus_tag="OQP62_002534"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HCS1722059.1"
                     /translation="MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAIRLAAAS
                     QGFEEHHAFTLDPSTDWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSE
                     LLHDDLLLIVRGNKLTKAQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNL
                     QLDDAANQLLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWV
                     DALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKH
                     RVWQNRRPMIGDALQRLHPAQLRQAVQLLTRTEITLKQDYGQSVWADLEGLSLLLCHK
                     ALADVFIDG"
     gene            complement(7442..8032)
                     /gene="lptE"
                     /locus_tag="OQP62_002535"
     CDS             complement(7442..8032)
                     /gene="lptE"
                     /locus_tag="OQP62_002535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HCS1722060.1"
                     /translation="MRYLVTLLLSLAVLVTAGCGWHLRSTTQVPASMKTMILDSGDPN
                     GPLSRAVRNQLRLNNVNLLDKDTTRKDVPSLRLGTVTISQDTASVFQDGQTAEYQMVM
                     TVNASVLIPGHDIYPISTKVYRSFFDNPQMALAKDNEQAMIVQEMYDKAAEQLIRKLA
                     SVRAADIQATKEEATADNETAAPASTPARVSTTLSN"
     gene            complement(8047..10629)
                     /gene="leuS"
                     /locus_tag="OQP62_002536"
     CDS             complement(8047..10629)
                     /gene="leuS"
                     /locus_tag="OQP62_002536"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008456064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HCS1722061.1"
                     /translation="MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYP
                     SGRLHMGHVRNYTIGDVVARYQHMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTY
                     DNIAYMKNQLKTLGFGYDWSREIATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCP
                     NDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLRDLDKLDHWPDTVKT
                     MQRNWIGRSEGVEITFDVKGYDNTLTVYTTRPDTFMGATYLAVAAGHPLAQKAAANNA
                     ELAAFIDECRNTKVAEAEMATMEKKGVDTGYKAIHPLTGEEIPVWAANFVLMEYGTGA
                     VMAVPGHDQRDYEFASKYGLTIKPVILAADGSEPDLSEQALTEKGVLFNSGEFDGLAF
                     EAAFNAIADKLAEKGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVLPTPEDQL
                     PVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPQY
                     QEGMLDSKAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVTSDEPAKQLLCQ
                     GMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSK
                     NNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFIKRVWKLVYEHTA
                     KGPVAALNVDALSEDQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP
                     QEGEQDRALLQEALQAVVRMLNPFTPHVCFTLWQELGGEGDIDNAPWPVADEQAMVEN
                     TTLVVVQVNGKVRGKITVAVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGKLLN
                     LVVG"
     gene            10866..11207
                     /locus_tag="OQP62_002537"
     CDS             10866..11207
                     /locus_tag="OQP62_002537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_447100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HCS1722062.1"
                     /translation="MARLLIREDRTKAKELIVKKNAVVIHPQDCVATAITALKAGETA
                     TMFIGEREISVVLHQDVPFGHKFAICDVPFHGEVYKYGESIGRATQEIKSGDYVHVHN
                     VESERGRGDWK"
     gene            11224..12396
                     /locus_tag="OQP62_002538"
     CDS             11224..12396
                     /locus_tag="OQP62_002538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_447101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HCS1722063.1"
                     /translation="MIMSNETFLGFRRPDGRFGIRNYVLILPTSVCANKVAQDIARQV
                     KGATWVNNDFGCCQVAGDARLTEKTLINVANNPNVGAIVVVGLGCEGAEPLRIAEEIT
                     AFGKPTSCITIQEEGGTLKCQARGISLARDYAQQLSMQKPQQAPVSELLLAMECGGSD
                     TTSGLASNPSCGVASDKLIRCGGSSILSETTEFIGAEHVMAKRAVTPEVGQQLIDLVV
                     GCEARAKALGEDIRGGQPTPGSIKGGLTTIEEKSLGCMHKAGHAPLQGVLEYADSPTH
                     PGLWIMDTPGQDIESISGMVAGGAQIVIFTTGRGTPAGNPIAPVIKITGNKATWEMMQ
                     DNIDIDVSAIMSGEASITQMGEEIYQEILRVANGKTTKSEDLGHNEFSIYKIAPTF"
     gene            12446..13399
                     /locus_tag="OQP62_002539"
     CDS             12446..13399
                     /locus_tag="OQP62_002539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate permease 2"
                     /protein_id="HCS1722064.1"
                     /translation="MKIKKTLERFPGGMMVVPLIIGALFKTFAPEALEIGGFVISISH
                     GAMAILGMFLVCMGADIQFKAAPKALKKGAAITFAKFASGVIIGILVGKFCGPDGLLG
                     LSALAIISAMTNSNSGLYAALVGEYGDETDGGAIAVISLNDGPFFTMLALGSAGMVSI
                     PFMNLVAVIIPIIIGMILGNLDEDMRKFLKQGSVVTIPFFAFGLGYSIDFARLITAGS
                     SGILLGLMTVAIGGFFNIFADRVTGGSGVAGAAVSTTSGNAVATPAAIALLDPHFTDL
                     ASTAAAQVAASTIITALCAPFLTVWIKKRYDRKLNPAAAGG"
     gene            13467..>13806
                     /locus_tag="OQP62_002540"
     CDS             13467..>13806
                     /locus_tag="OQP62_002540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrpR N-terminal domain-containing protein"
                     /protein_id="HCS1722065.1"
                     /translation="MNKTKDIAASPLCFVSPYPQLAKAAEALVAQLDYAVTIHQTTLN
                     RILDELPLLESRGHQVLISRGGCAEILKKHSKLPVVEIKMSGYDILDALIPFKGQKGT
                     VGIVGFSSVIK"
BASE COUNT         3072 a         3660 c         3827 g         3247 t
ORIGIN      
        1 taatattaac attaatccgc cagccatcac gcgaccaaat gtagtttgcg ctctggcggc
       61 aatccacaga ccgcgcatta ttagcaaaat atagagcgcg agcagaatca ggatgcccac
      121 cagaccgagc tcttccgcca gtaccgcgaa aataaagtcg gtatggcgtt cgggtaaaaa
      181 ctccagctgc gactgggtgc cgtggagcca gcctttaccg cgcaggccgc ctgagccaat
      241 ggcgatttta gactgaataa tatgatagcc cgcgcccagc ggatcggtct ccggatcaag
      301 gagcatcatg acgcgctggc gttggtaatc gtgcatcagg aaaaaccaca aaataggaat
      361 aaatgcagcg atcaatacaa tggcgacccc aattaagcgc cagctcaggc cagacaaaaa
      421 taggacaaag agaccggaaa gggcgaccag aatagacgtc cccaggtccg gctgggcggc
      481 gaccagcagg gtaggcataa agattaatac cagggcgatg gcggtatttt tcagcgaggg
      541 cgggcagacg tcgcggttaa taaagcgggc gaccatcagc ggcacggcga ttttggctat
      601 ttccgaaggc tgaaagcgaa cgattcccag atcgagccag cgctgcgcgc ccttggatat
      661 tgcgccgaag gcatcaacgg cgaccagcag aatgatacaa atgatataga gatagggcgc
      721 ccagccttca tacacgcgcg gcgggatctg cgccatcacc accataacca ccagccccat
      781 cgcaatctga ccgattttac gctccatcat gccgatgtcc tggccgctgg cgctccagat
      841 gaccaacgcg ctataaacca gtaacgccag cagaatgagt agcatcgtgg gatcgatatg
      901 aattttatcc cagaaggttt ttttgttcgg attatccgtc atgattattg gtcctccgcc
      961 gctgcaacca ccgggttttc cgcaggcaaa tgggtgttgt tgtcgcccag catgatgtga
     1021 tcaaggattt ggcgcatgat cgtgcctact gccgggcctg cgccgccgtt ttcaaggatg
     1081 atcgcgacgg cgacctgggg attgttatac ggcgcaaagg cggtcattaa tttatggtcg
     1141 cgcaggcgct cggcgatttt atgcgcattg tacgtttcgt tggccttcag gccaaagacc
     1201 tgcgcggtgc ccgacttcgc cgcgatttta tagggcgcgc tggcaaaata tttatgcgcc
     1261 gtgccgttag ggcggttggc gacgccatac atgccatctt tcgcaatttc ccagtagccg
     1321 gagtgaatat cgcccaccgg tggctcatgc ggctgtaccc acggcacctg tttaccgttt
     1381 tccgcggtgc tcattaacag atgcgggact ttaactacac cgtcgttaat aaggatcatc
     1441 agcgccttac tcatctgaat cggcgttgcc gtccagtagc cctggccgat gcccaccgga
     1501 atcgtatcgc cctgatacca cggtttttta aagcgtttct gtttccactc gcgggtcggc
     1561 atattaccag agcgctcttc tgcgagatca attccggtat agtgaccata gctgaactta
     1621 cccatccatt ctgacaggcg atcgatcccc atgtcatagg ccacctgata gaagaaggta
     1681 tctgccgact cttcaaggga tttggtgata ttcagatgcc cgtggcccca ttttttccag
     1741 tcgcggtagc gtttctcaga ccccggcaac tgccaccagc cagggtcgaa aagactggtg
     1801 ttacgggtga tgacgccagc gcttaacgcc gatacggcga cgtaaggctt aacggtagaa
     1861 gcgggtgggt agacaccctg agtcgcgcgg ttcactaatg gcgtgttcgg gtcgttaagc
     1921 agcccggagt aatctttgct ggagatgccg tccacgaaaa ggttagggtc gtaacttggc
     1981 atggagacca gcgatagcac gccgccggta cgcggatcgg tgacaatcac cgccgcgcga
     2041 ctgcctgcca gcagcgtttc aatatactgc tggagcttga gatccagcgt caggtagata
     2101 tcgtgtccgg cctgcggcgg cacctcttta agctggcgaa taacgcggcc gcggttgttg
     2161 acttcaacct cttcataacc ggtttgccca tgcagaatat cttcatagta gcgctcaatg
     2221 cccagcttgc cgatgtcatg ggtggcggcg tagttcgcca gtttgttttc tctgtcgaga
     2281 cgctcgacgt ctttatcatt gattttcgat acgtagccga taacgtgggt cagcgccgat
     2341 ccgtatggat aatagcggcg tttatagcct ttgacttcga cgcccggaaa acggtactgg
     2401 ttgacagcaa agcgcgcgac ctgaacttcc gtcaggtttg ttttcaccgg aatagaagta
     2461 aagcgatggg atcgggcgcg ctctttttta aaggcggcga tatcgtcgtc gtttaaatcg
     2521 accacactgc gtagtgcatc cagcgtttgc tgaacgttat ccaccttttc cggcatcatt
     2581 tcaatctgat agatagtgcg gttcagcgca aggggaatgc cgttgcggtc gtagattatc
     2641 ccgcggcttg gcgcaattgg caccagcttg atacggtttt cgttcgagcg ggtctggtaa
     2701 tcggtaaaac ggagaatttg cagattatac aaattggcga tcagtacgcc ggtcagcagc
     2761 aaaataccca aaaaggcgac cagcgcccga cgcacaaaca gtgcggactc agccgtatag
     2821 tcacgaaaag aattttgtcg tttcatccgc tgcttaatct tctcaagact tcacgatcac
     2881 tcacggtgat aagggtggtt ggttgtgatg ctccacgccc ggtacaaact ctccgcgacc
     2941 agaacccgaa ccagcgggtg agggagcgtt aacgccgaga gcgaccagct ctgttccgct
     3001 gccgctttgc aggcgggaga taatccttcc gggccgccaa tcagcaaact gacgtcgcgc
     3061 ccgtcctgtt tccagcgctc cagctcattg gctaactgcg gcgtatccca cggcttgcct
     3121 ggaatatcca gggtaacaat gcgattctta ccggcggcgg ccagcatctg ctcgccctct
     3181 ttgtcgagaa tgcgtttgat atccgcgttc ttgccgcgtt tgcccgcagg gatttcgatc
     3241 agctcaaagg gcatatcttt cggaaaacga cgcagatatt ccgtaaatcc cgtttgaacc
     3301 cagtcgggca tcttcgtgcc gacagcgaca agttgcagct tcacgcatta actccagagt
     3361 ttttccagtt catacaggcg gcgactttct tcctgcatga catgcacaat cacatcgccc
     3421 agatcgacga caatccagtc agccgcattt tcgccttcga cgcccaacgg cagcataccg
     3481 gccgcgcgcg acgactgcac cacgtggtcg gcaatagaca taacgtgacg gctggaggtg
     3541 ccggtacaaa taatcataca gtcggtgata ctggatttac cctgaacatc taaggcgatg
     3601 atgtcctgac ctttcaggtc atcaatttta tcgataacaa aatcctggag tgctttaccc
     3661 tgcaagtttt ccccctgggt gaataattgc gttataacga tagaaaaaag gccaacaggc
     3721 tggaccggta aggcgttgcg agttaacgct aaccttccgg cgggacgccg tgtagtatac
     3781 ctgaatcagc ggcgataccg ggacttatgt cgccggatcg gcgtttaaaa ccagattatc
     3841 atcccatccc acgtcacaga aagcatcgcc atttttgtaa aacaatttct gcaaagctct
     3901 gcaaggtgaa aaaagcctgg ctgcggagaa taacagcctg tcgggggctg tcaatgggcg
     3961 aaaccgctgc ggcgagaaaa aacggaaaat tcatcactca ggccgccaga cggcacgact
     4021 atttaatact ttcagggtgg cgaacccttc gcatatgtcg attgtgctcc agcatccctg
     4081 ttctacccgg aaatgccata gcgaggcggc gggcattgcg agcaggcggg caatcaacag
     4141 gctgagtacg ccctgatggc tgacgatcag caggttctgg caatcgctga acgcgccgag
     4201 tcgcgagata aagcgctcta cgcgccgggt aaaagcctga aaaccctcgc cattggtcgg
     4261 aaccgcattc tgccagtccg tacaccaggc ggcatagctt tcggcatctt catgggtgag
     4321 gtcgcggtga tggcgcattt cccagtcgcc gaagtacatc tcattaagct caggtaagat
     4381 gtgttgcggc gtatcccggc cctccagtac gagccgggcg gtatggcgcg cgcgctccag
     4441 ctcgctgcat aacaccctgt caaatggcgc gtggcgcaat aaagtatgta gcgttttcgc
     4501 ctggccaatc cctttttccg ttaacggcgt gggagcatgt ccgctataca acccggcgac
     4561 attggcctcg gtttcgccat gacgcaccag ccacaatcgc atggtattcc tcatgaggtt
     4621 aaatgcgcaa aacatgataa tgcccctgat tgcgcaacgt ttttttcact aaaatagcgt
     4681 tttttggccg gaggcataat ggcgttattc aacagcgcgc atggcggtaa tattcgggaa
     4741 gccgcgacgg tgttgggcat ctcgcctgac cagttactgg attttagcgc aaacattaat
     4801 ccgctgggta tgcctgtcag cgtgaaacgc gcgcttatcg acaatctgga ctgcattgag
     4861 cgctacccgg acgccgatta ttttcatttg caccaggcgc tggcgcgtca tcaccaggtg
     4921 ccggcatcgt ggatactggc gggaaatggc gagacggagt caatctttac cgtggcgagc
     4981 ggtcttaaac cgcgtcgtgc aataattgtc acgccaggtt tcgcggagta tggccgggcg
     5041 ctggcgcaaa ttggctgtga aattcgtcgc tggtctctac gcgaagcgga tggctggcag
     5101 cttaccgatg ccattcttga ggcgttgacg cccgatctgg actgcctgtt tctgtgtacg
     5161 cccaataatc ctaccggcct gctgccggag cggcagttat tacaggccat tgccgatcgc
     5221 tgcaaatcgc tgaacattaa cctgatcctg gatgaagcgt ttatcgattt tattccgcat
     5281 gagacgggct ttattcctgc tcttaaagat aatccgcata tctgggtgct gcgttcgctg
     5341 accaaatttt atgccattcc cggcctgcgg ttgggatatc tcgtcaatag cgatgacgcg
     5401 gcggtggcgc ggatgcgtcg ccaacaaatg ccgtggtcgg ttaacgcgct ggcggcgctg
     5461 gccggtgagg tagcgttaca ggatagtgcc tggcaacagg cgacctggca ttggttacgg
     5521 gaggagggcg cccggtttta tcaggcgctt tgtcagcttc ccctgctgac ggtttatccc
     5581 gggcgggcaa actatctgtt gttacgctgt gagcgagagg atattgatct gcagcgacgg
     5641 ttgctgacgc agcggatttt aatccgtagc tgcgctaact acccggggct ggacagccgc
     5701 tattatcgtg tggcgatacg cagcgctgcg caaaacgagc gtctgctggc ggcgctacgc
     5761 aatgtgctta ccggtataac ccctgctgat tgatgtagtt cagcacgttt tccggcaaca
     5821 gatcgtcgca ggattcgcct ttttccagcc gttcgcggat gagggttgcg gagatattaa
     5881 gccatggcgt ttccgccagg taaattttac cggctggcaa ctggtgcaga tcgtctggcg
     5941 tatgggtcag atgctgttcc agccactgct ggtgttgcgc ctgcgtcatt tcaagggggt
     6001 agccgggacg acgacaaacg atcaggtgag tgttatcaag gatggtgtcg taatcatgcc
     6061 aggtggggaa gttaagcagc gagtcctggc cgataataaa cgccagcggc gcttcggggc
     6121 cctgttcttc gcgccatgct ttcaacgttt gcgcagtgta agagggcgcg tttcgctgta
     6181 gctcgcgttc acccagcgta aaaagcggct tatcggcgat agccagctcc agcatatatt
     6241 tacgctgcgc gctggaggct tccggctggg ggcgatgcgg cggcacattg ttaggcataa
     6301 taatcacccg cgataagccg atcagattcg ccaacgtttc aacaggttta agatgtccat
     6361 aatgcaccgg atcaaaggtg ccgccgaata aagcctgtaa cgatttcata tcacccatca
     6421 ataaatacgt ctgccagcgc cttatggcag agcaggagcg acagcccttc aagatctgcc
     6481 cataccgact gaccataatc ctgtttgagc gtaatttctg tacgcgtcag taactgcacg
     6541 gcctggcgaa gctgtgcagg atggagacgc tgcaacgcgt cgccgatcat ggggcgacgg
     6601 ttttgccaga cccggtgttt atcaaacagc gcgcgtaacg gcgtatgcgc ggactgacgt
     6661 ttgagattta ccagtagcag cagctctcgc tggagggtcc gcagcagaat aaccggttcg
     6721 ctgccttcaa ggcgtagctg ttgcaggata tgcagcgcgc gtttgctttt ccccatcagt
     6781 aacgcatcca cccagtggaa aggggtaaag tgggcggcgt cattgacggc ctgctccacg
     6841 cgaggaagcg ttaacttacc gtcaggccaa agcagcgaca gccgttccag cgcctgcgcc
     6901 agcgccaaca gattgccctc atagcaatag cacagcagtt ggttcgcggc gtcatccagt
     6961 tgcaaattct gtgctttcgc tctggcggcc acccagcggg gaagctgcgc ctgctccggc
     7021 gtctgacaac tgacctgaac gctacgatct gccagcgcgg tataccaggc ggcgttttcc
     7081 tgcgctttgg tgagcttgtt tccgcgtact attaataaca ggtcgtcatg cagtagctcg
     7141 ctcagggtgg cgagttgctc attcattgcc gcgttaggcc cgttttccgg cagttgcagc
     7201 accagcgttt ggcggctggc gaacaggctc atcgcctggc agagtgagaa aagcgatccc
     7261 cagtcggtac tgggatcgag agtaaaagcg tggtgctctt cgaagccttg cgacgcagcc
     7321 gccagacgaa tagcgtcctg actttcctgc agcagcagcg gatcgttgcc caataataga
     7381 tatgccgcac gcagcccttc gttgagctgc gcgcggagtt gttcaggata caacctgatc
     7441 attagttact cagcgtagtg gagacgcgtg ctggcgtaga ggcgggcgcc gccgtctcat
     7501 tgtcggcggt agcctcctct ttcgtcgcct gaatatccgc cgcgcggacg ctggccagct
     7561 tacgaatcag ctgttcagcg gctttgtcgt acatctcctg aacgatcatg gcctgctcgt
     7621 tatccttcgc caacgccatc tgcgggttat cgaagaacga acggtacact ttcgtgctga
     7681 taggatagat gtcatggccc ggaatcaata ccgaggcatt gacggtcatc accatctgat
     7741 attccgccgt ctggccgtcc tggaacactg acgccgtatc ctgcgaaata gtcaccgttc
     7801 caagccgcag agacggaacg tctttgcgcg ttgtgtcttt atcaagcagg tttacgttat
     7861 tcagccgtaa ctgattacgt accgcacgac ttagcggacc gttcggatcg ccggaatcga
     7921 ggatcatcgt tttcattgaa gccggaacct gcgtagtgct acgcagatgc cagccgcatc
     7981 cggcggtgac cagcaccgcc agagataaca acagtgttac cagatatcgc acgcttcctc
     8041 ccgcgcttag ccaacaacca gattgaggag tttacccgga acgtaaatca ctttacgcac
     8101 ggtaacgcca tcaagatatt ttgccaccag atgttcctgg cctgcacgtt cacgcacctg
     8161 ttcttcggtg gcatccaccg caacggtgat cttaccgcga actttaccgt taacctgcac
     8221 gacaaccagc gtggtgtttt ccaccattgc ctgctcgtcg gcaaccggcc acggcgcgtt
     8281 gtcgatatcg ccttcgccac ccagttcctg ccacaaggta aagcagacgt gcggggtgaa
     8341 cgggttaagc atacgcacga cggcctgcag cgcttcctga agcagtgcgc ggtcttgttc
     8401 gccttcctgc ggggctttcg ccagtttgtt catcaactcc atgatcgccg caatggcggt
     8461 gttgaacgtc tgacggcggc cgatatcatc ggtcactttg gcaatggttt tatgcacatc
     8521 gcgacgcagc gctttttgat cttcgctcag cgcatcgacg ttcagcgccg cgacaggacc
     8581 tttagcggtg tgttcgtaaa ccagcttcca gacgcgttta ataaagcggt ttgcgccttc
     8641 tacgccggac tcctgccatt ccagagtcat atccgccgga gaagcgaaca tcataaacag
     8701 gcgtaccgta tccgcgccat aacgttcaac cattacctgc gggtcgatac cgttattttt
     8761 cgacttggac attttactca tgccagtgta gaccagctca tgacccgctg cgtcttttgc
     8821 tttgacgatg cggccttttt catcgcgctc gacgatagcg tcaactggcg aaacccagtt
     8881 acgctcgccg ttctcgccga cataatagaa cgcatccgcc agtaccatgc cctggcacag
     8941 caactgttta gccggctcgt cagaggtgac catgcccgca tcgcgcatca gcttatggaa
     9001 gaagcggaag tagagcaggt gcatgatggc atgttcaata ccgccgatgt agatgtcgac
     9061 tggcagccag tagtttgccg ctttcgaatc cagcattcct tcctgatact gcgggcaggt
     9121 gtaacgcgcg tagtaccatg acgattccat aaaggtgtcg aaggtgtcgg tttcacgcag
     9181 cgccggcata ccgttaacgg tggttttcgc ccactcagga tcggccttga tcgggctggt
     9241 gatgccgtcc atgacgacgt cttccggcaa aataaccggc agttgatctt ccggcgtcgg
     9301 cagcacggtg ccgtcttcca gggtgaccat cgggatcggc gcgccccagt aacgctgacg
     9361 ggaaacgccc cagtcacgca gacggtagtt cactttacgt tcgccgacgc ctttttccgc
     9421 cagtttatcg gcaatggcgt taaacgccgc ttcaaaggcc agaccgtcga actcaccgga
     9481 gttaaacagc acgccttttt cggtcagcgc ctgttcggaa agatccggct cggaaccgtc
     9541 agcggccaga atcaccggct tgatggtcaa accgtatttg gaggcaaatt cgtagtcgcg
     9601 ctgatcgtga cccggaacgg ccatcaccgc gccagtgccg tactccatca ggacaaagtt
     9661 tgccgcccag accgggatct cttcgccagt taacggatga atcgctttat agccggtgtc
     9721 gacgcctttt ttctccatgg tcgccatttc ggcttcggcc actttggtgt tacggcattc
     9781 gtcgatgaac gccgccagct cggcgttgtt cgccgccgct ttttgcgcca gcggatgacc
     9841 ggcggccact gccaggtagg tggcgcccat aaaggtatcc ggacgggtgg tatagacggt
     9901 cagcgtgtta tcgtaaccct tcacatcgaa ggtgatttcc acgccttcag agcggccaat
     9961 ccagttgcgc tgcatcgttt ttacggtatc aggccagtgg tccagcttat ccagatcgcg
    10021 caacagctcg tctgcgtaag cggtgatttt gataaaccac tgtgggatct ctttacgctc
    10081 aactttggtg tcgcaacgcc agcagcagcc gtcgatcacc tgttcgttgg cgagaacggt
    10141 ctgatcgttc gggcaccagt taacggcaga agtcttcttg tacaccaggc cttttttata
    10201 cagctcggtg aagaatttct gttcccaacg gtagtattcc ggggtgcagg tcgcgatttc
    10261 acggctccag tcatagccaa aacccagcgt tttgagctgg tttttcatgt acgcgatgtt
    10321 gtcgtacgtc cacggcgccg gcgcggtgtt gttcttcacc gccgcgcctt ccgccggcag
    10381 gccgaaggcg tcccagccga ttggctgcag cacgtttttg cccagcatat gctggtagcg
    10441 ggcaaccacg tcgccgatgg tgtagttacg tacgtggccc atgtgtagtc ggccagaagg
    10501 atagggaagc atcgacaggc agtaatactt ctctttgctc tcgtcttcgg tcacttcaaa
    10561 tgtgcgcttc tcatcccagt gaagctgtac tttggattct atctcttccg ggcggtattg
    10621 ctcttgcatg gcagccagta gtcctgtttt cgatacagct acaaatgtag ctttagaggt
    10681 ggtgtttaga tccgcatagc atagcccaaa cacgcacgtc aaaacagggg gtagaacatt
    10741 tgtcgcgcta ggcgttcatg aggaggtgac gcaaaatgcg acacgactga ggcaaattac
    10801 cgcagttcct gtcaccgcca gatcggcctg taaaaataaa gtcatataaa ccatgcagtt
    10861 aaaaaatggc acgccttttg attagggaag acaggactaa agcaaaggag ttaatcgtga
    10921 aaaaaaatgc agtggtgatt caccctcagg attgcgtcgc gacggctatt acggcgctca
    10981 aggccggcga aaccgccaca atgttcattg gcgaacgcga gataagcgtt gtgttacatc
    11041 aggatgtgcc atttggccac aaattcgcca tctgcgatgt gccttttcat ggcgaagttt
    11101 ataaatatgg cgaatccatt ggccgcgcca ctcaggaaat aaaaagtggc gactatgtgc
    11161 acgtccacaa tgtggaaagc gaacgcggac gtggtgactg gaaataatat aaaacaaggg
    11221 aaaatgatta tgagcaatga gacttttttg ggtttccgac gccctgacgg ccgttttggc
    11281 atccgtaatt atgtactgat tttacctacc agcgtttgtg cgaataaagt tgcccaggat
    11341 attgcccggc aggtaaaagg tgcgacatgg gtgaataacg attttggctg ctgccaggtg
    11401 gcaggcgatg cgcgtctgac ggaaaagaca ttgattaatg tggcgaataa tcccaacgtc
    11461 ggcgctattg tggttgtggg cttaggctgt gaaggcgcgg agccgctgcg catcgcagaa
    11521 gagattaccg catttggcaa accgacctcc tgcattacca ttcaggaaga gggcggcacg
    11581 cttaaatgtc aggccagggg gatttcgctg gcccgcgact atgcgcaaca actctccatg
    11641 caaaaaccgc agcaagcacc ggttagcgag ctgctgctgg cgatggagtg cggcgggtca
    11701 gatacgacat cggggctggc gtctaaccct tcctgcgggg tcgcctcgga taagctgata
    11761 cgctgcggcg gaagctcaat tctttctgaa acgacggaat ttattggcgc cgagcatgtg
    11821 atggcgaaac gcgcggtgac gccggaggtt ggtcaacagc tcattgattt agtggtcggc
    11881 tgtgaggcgc gagcaaaagc gctgggcgag gatattcgcg ggggacagcc gacgccgggc
    11941 agtattaaag gcgggctgac taccattgaa gaaaaatcgt taggttgtat gcataaagcg
    12001 ggtcatgcgc cgctacaggg cgtactggaa tatgccgata gtccaacgca tccgggcctg
    12061 tggattatgg ataccccagg gcaggatatt gaatctattt ccggcatggt ggcgggtgga
    12121 gcgcagatcg ttatttttac taccggtcgc ggaacgcctg ccggtaaccc aatagcgccg
    12181 gtaataaaaa ttacgggtaa taaagcaacg tgggaaatga tgcaggacaa tattgatatt
    12241 gatgtgtccg ccattatgtc tggcgaggct tctattacgc aaatgggcga ggaaatttat
    12301 caggaaattt tacgcgtcgc gaatgggaaa acgactaaat cagaagattt aggtcataac
    12361 gaattctcta tttataagat cgcgccgacg ttctgatacc aaatcgggca gcacaagctg
    12421 tccggttatc tcctgggaat aagctatgaa aattaaaaaa acactggaac gttttcctgg
    12481 tggtatgatg gttgtaccgc tgatcatcgg cgccttgttt aaaacttttg cgccggaggc
    12541 gctggaaata ggcggttttg tcatctctat ttcgcatggc gcaatggcga ttttaggcat
    12601 gtttttagtc tgtatgggcg cggatatcca gtttaaagcc gcgccgaaag cgttgaaaaa
    12661 aggcgctgcg atcacctttg cgaaatttgc cagcggcgtg attattggca ttctggtcgg
    12721 gaaattttgc ggcccggatg ggttattagg tctgtcggct ttagcgatta tttcggcgat
    12781 gaccaactcg aacagtgggt tatatgccgc gttggtgggg gagtacggcg atgaaaccga
    12841 cggcggcgcg attgcggtaa tatcgttgaa cgatggtccc tttttcacca tgctggcgtt
    12901 aggatcggca ggcatggtgt cgataccctt tatgaatctg gtggcggtta ttattcccat
    12961 tatcattggc atgattttgg gcaatctgga tgaggacatg cgcaagtttc ttaaacaggg
    13021 cagcgtggta acgattccct tttttgcctt tgggttagga tacagtattg atttcgcaag
    13081 acttatcacg gcaggttctt caggcatttt actgggactc atgacggtgg cgattggcgg
    13141 attttttaat attttcgccg atcgtgtgac gggaggcagc ggcgtggcag gcgcggcggt
    13201 atccaccacc tctggcaacg ccgtcgcgac gccagcggca atcgcgctgc tcgatccgca
    13261 ttttaccgac ctggcgtcga cggcggcggc gcaggtggcg gcctcgacga ttattaccgc
    13321 tctgtgcgcc cccttcctga ccgtatggat aaaaaaacgc tacgatcgta aactgaaccc
    13381 agccgccgca ggcggttagc gtttcggcgg aaaataaatc acgacgggcg gtctcgcccg
    13441 tttataaacc aacaggatgg tgagtgatga ataagacgaa agatatagcc gcatctcctc
    13501 tctgttttgt ctctccttat ccgcaactgg caaaggctgc cgaggcgctg gtcgcgcagt
    13561 tggattacgc cgtcactatt catcaaacga cgcttaatcg tatcctggat gagctacctt
    13621 tattagagtc ccgtgggcac caggtactga ttagtcgtgg cggctgtgcg gaaatattaa
    13681 aaaagcacag taaattaccg gtagtcgaaa ttaaaatgtc cggctacgac attcttgatg
    13741 cgcttatccc ttttaaagga caaaaaggca ctgtcggtat tgtcggcttt tccagtgtga
    13801 tcaaag
//
LOCUS       DAJVSD010000107        13785 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.107, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000107 DAJVSD010000000
VERSION     DAJVSD010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 13785)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13785)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13785
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.107"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            268..810
                     /locus_tag="OQP62_002541"
     CDS             268..810
                     /locus_tag="OQP62_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HCS1722066.1"
                     /translation="MGITIMQKTSLFFSAAAITLTLMASSASAATPTAAQNEATSTVK
                     QEITESINRYLYSIDKADPTLGKQLFYVSPETSFIHPRGHERGWSQIAENFYGTTMGK
                     TFSKRTLKLDAPPAIHVYGNAAVAEFDWHFTAVRRDNGQTQHTTGRESQVWAKIPNTG
                     WRIVHVHYSGPAKTGVGEGY"
     gene            complement(866..1780)
                     /locus_tag="OQP62_002542"
     CDS             complement(866..1780)
                     /locus_tag="OQP62_002542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416037.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bestrophin family protein"
                     /protein_id="HCS1722067.1"
                     /translation="MIVRPQQHWIRLIFVWHGSVLSKIFSRLLLNFLLSIAVIIMLPW
                     YTMLGIKFTLAPFSILGVAIAIFLGFRNNACYARYVEARHLWGQLMIASRSILREVKT
                     TLPDERGIEDFVRLQIAFAHCLRMTLRRQPQTQVLGNYLDQEALQKVVASHSPANRIL
                     LLMGEWLAIRRRSGKLSDILFHSLNNRLNDMSSVLAGCERIANTPVPFAYTLILHRTV
                     YLFCIMLPFALVVDLHYMTPFISVLISYTFIALDALAEELEDPFGTENNDLPLDAICN
                     AIEIDLLQMNDERDIPAKRIPDKRYQLT"
     gene            complement(2036..2395)
                     /locus_tag="OQP62_002543"
     CDS             complement(2036..2395)
                     /locus_tag="OQP62_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4186 domain-containing protein"
                     /protein_id="HCS1722068.1"
                     /translation="MNALEPLFARLARSTFRSRFRLGIKERQYCWDKGAEVIDKHAAD
                     FIAQRLVPAHPANDGKQTPMRGHPVFIAQHATATCCRGCLAKWHQIPQGEPLSKAQQQ
                     YIVSVIHYWLVIQMNQR"
     gene            complement(2395..3321)
                     /gene="glsB"
                     /locus_tag="OQP62_002544"
     CDS             complement(2395..3321)
                     /gene="glsB"
                     /locus_tag="OQP62_002544"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase B"
                     /protein_id="HCS1722069.1"
                     /translation="MARAMDNAILETILQRVRPLIGQGKVADYIPALASVEGSKLGIA
                     ICTVDGQHYQAGDAHERFSIQSISKVLSLVMAMRHYPEEEIWQRVGKDPSGSPFNSLV
                     QLEMEQGIPRNPFINAGALVVCDMLQGRLSAPRQRMLEVARALCGVSDITYDATVARS
                     EFEHSARNAAIAWLMKSFGNFHHDVPTVLQNYFHYCALKMSCMELARTFVFLANQGEA
                     FHLDEPVVTPMQARQINALMATSGMYQNAGEFAWRVGLPAKSGVGGGIVAIVPHEMAI
                     AVWSPELDPAGNSLAGIAALEQLTQTLGRLVY"
     gene            complement(3394..4782)
                     /gene="sad"
                     /locus_tag="OQP62_002545"
     CDS             complement(3394..4782)
                     /gene="sad"
                     /locus_tag="OQP62_002545"
                     /EC_number="1.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate-semialdehyde dehydrogenase"
                     /protein_id="HCS1722070.1"
                     /translation="MTMMTATQALSVNPATGQTLAAMPWANAQEIEHALSLAASGFKK
                     WKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIKQARAEVTKSAALCDWYAE
                     HGPAMLNPEPTLVENQQAVIEYRPLGVILAIMPWNFPLWQVLRGAVPILLAGNSYLLK
                     HAPNVTGCAQMIARILTEAGTPAGVYGWVNANNEGVSQMINDPRIAAVTVTGSVRAGA
                     AIGAQAGAALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIV
                     EEGIAQAFNDRFVAAAAALKMGDPLVEENDLGPMARFDLRDELHQQVQASVAEGARLL
                     LGGEKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAITVAKDAEHALALANDSEFG
                     LSATIFTADDTLAAEMAARLECGGVFINGYSASDARVAFGGVKKSGFGRELSHFGLHE
                     FCNVQTVWKNRV"
     gene            4885..5757
                     /locus_tag="OQP62_002546"
     CDS             4885..5757
                     /locus_tag="OQP62_002546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1722071.1"
                     /translation="MDLTQLEMFNAVALTGSITQAAAKVHRVPSNLTTRIRQLEADLG
                     VSLFIRENQRLRLSPAGHNFLRYSQQILALVDEARMVVAGEEPQGLFSLGALESTAAV
                     RIPALLAGYNQRYPKIQFALTTGPSGAMLDGVLEGKLNAAFIDGPLMHPGLEGIPAYQ
                     EEMMIVAPHGHSVVSRASEVNGYNIYAFRANCSYRRHFESWFHADGATPGTIHEMESY
                     HGMLACVIAGAGIALMPASMLNSMPGHHQVEAWPLAEKWRWLSTWLMWRRGAMTRQLE
                     AFIELLNAQLASAD"
     gene            5873..7063
                     /locus_tag="OQP62_002547"
     CDS             5873..7063
                     /locus_tag="OQP62_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transporter"
                     /protein_id="HCS1722072.1"
                     /translation="MTINPVSRKVAWLRVVTLAIAAFIFNTTEFVPVGLLSDIAESFH
                     MQTAQVGIMLTIYAWVVAVMSLPFMLLTSQMERRKLLICLFVLFIASHVLSFLAWNFT
                     VLVISRIGIAFAHAIFWSITASLAIRLAPAGKRAQALSLIATGTALAMVLGLPIGRVV
                     GQYFGWRTTFFAIGMGALITLLCLIKLLPKLPSEHSGSLKSLPLLFRRPALMSLYVLT
                     VVVVTAHYTAYSYIEPFVQNVAGLSANFATVLLLILGGAGIIGSLVFGKLGNRHASSL
                     VSIAIALLVVCLLLLLPAADSEAHLAILSIFWGIAIMVIGLGMQVKVLALAPDATDVA
                     MALFSGIFNIGIGAGALVGNQVSLHWSMSAIGYIGAIPACAALVWAVLIFRKWPVTLE
                     EQPH"
     gene            complement(7110..7775)
                     /locus_tag="OQP62_002548"
     CDS             complement(7110..7775)
                     /locus_tag="OQP62_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family NAAT transporter"
                     /protein_id="HCS1722073.1"
                     /translation="MMDLFKAIGLGLVVLLPLANPLTTVALFLGLAGNMNSAERNRQS
                     YMASVYVFAIMMVAYYAGQLVMNTFGISIPGLRIAGGLIVAFIGFRMLFPQQKAHESP
                     EAKSKSEELADEPTANIAFVPLAMPSTAGPGTIAMIISSASTVRHGGEFPDWVIMVAP
                     PIIFLAVAVILWGCLRSSGAIMRLVGKGGIEAISRLMGFLLVCMGVQFIINGVLEIIK
                     TYH"
     gene            8034..8468
                     /gene="marR"
                     /locus_tag="OQP62_002549"
     CDS             8034..8468
                     /gene="marR"
                     /locus_tag="OQP62_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple antibiotic resistance transcriptional
                     regulator MarR"
                     /protein_id="HCS1722074.1"
                     /translation="MKSTSDLFNEIIPLGRLIYMVNQKKDRLLNNYLSPLDITATQFK
                     VLCSIRCAGCITPVELKKVLSVDLGALTRMLDRLLCKGWIERLPNPNDKRGVLVKLTP
                     DGAAICEQCHQRPGQDLHQELTKNLTADEVATLEYLLKKILP"
     gene            8488..8871
                     /gene="marA"
                     /locus_tag="OQP62_002550"
     CDS             8488..8871
                     /gene="marA"
                     /locus_tag="OQP62_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000091194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MDR efflux pump AcrAB transcriptional activator
                     MarA"
                     /protein_id="HCS1722075.1"
                     /translation="MSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQR
                     MFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDV
                     PPHKYRITNMHGESRYMLPLNHGNY"
     gene            8900..9115
                     /gene="marB"
                     /locus_tag="OQP62_002551"
     CDS             8900..9115
                     /gene="marB"
                     /locus_tag="OQP62_002551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple antibiotic resistance protein MarB"
                     /protein_id="HCS1722076.1"
                     /translation="MKMLFPALPGLLLIASGYGIAEQTLLPVAQNSRDVMLLPCVGDP
                     PNDLHPVSVNSDKSDELGVPYYNDQHL"
     gene            complement(9234..10136)
                     /gene="eamA"
                     /locus_tag="OQP62_002552"
     CDS             complement(9234..10136)
                     /gene="eamA"
                     /locus_tag="OQP62_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylserine/cysteine exporter"
                     /protein_id="HCS1722077.1"
                     /translation="MMSRKDGFLALLVVVVWGLNFVVIKVGLHHMPPLLLAGLRFLLV
                     AFPAIFFVARPKVPLTLLLGYGLTISFGQFAFLFCAIKFGMPAGLASLVLQAQAFFTM
                     ALGAFVFSERLQRKQLAGIALAIIGVLVLIEASLNGQHIAMSGFMLTLAAAFSWACGN
                     IFNKKIMQHSPRPAVMSLVVWSALIPILPFLLSSLLLEGADHITQSLITIDMTTILSL
                     LYLAFVATILGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAAVLLGETLTGMQLAGA
                     VLIMAGLYINVFGFRVRRTARVRG"
     gene            10364..11551
                     /gene="ydeE"
                     /locus_tag="OQP62_002553"
     CDS             10364..11551
                     /gene="ydeE"
                     /locus_tag="OQP62_002553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux MFS transporter YdeE"
                     /protein_id="HCS1722078.1"
                     /translation="MNPGLRRSTLALLASSLLLTIGRGATLPFMTIYLNRQYGLGVDL
                     IGYALTSALTIGVIFSLGFGILADKFDKKRYMLLAIIAFACGFIAIPMVHNVVLVVLL
                     FALINCAYSVFSTVLKAWFADNLTATTKTRIFSLNYTVLNIGWTVGPPLGTLLVMQSI
                     NLPFWLAAICSAFPLVFIQVWVTRSVAASEGKNAAIWSPSVLLRDKALLWFTLSAFLA
                     SFVGVAFASCISQYVMVVADSGFAEKVVAVVLPVNAVIVVSLQYAVGRRLTAVNIRPM
                     MTTGTVFFIAGLIGFIFSGDNLFFWGLSAAVFTIGEIIYAPGEYMLIDNIAPAGMKAS
                     YFSAQSLGWLGAAVNPLASGVILTTLPAWSLFVVLIIAIVFAWALMLKGMRITPTQQA
                     ITC"
     gene            11799..11894
                     /gene="mgtS"
                     /locus_tag="OQP62_002554"
     CDS             11799..11894
                     /gene="mgtS"
                     /locus_tag="OQP62_002554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein MgtS"
                     /protein_id="HCS1722079.1"
                     /translation="MLGSINLFIVVLGIILFSGFLAAWFSHKWDD"
     gene            complement(12242..12615)
                     /locus_tag="OQP62_002555"
                     /pseudo
     CDS             complement(12242..12615)
                     /locus_tag="OQP62_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460475.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI family stress tolerance OB fold protein"
     gene            13042..13569
                     /locus_tag="OQP62_002556"
     CDS             13042..13569
                     /locus_tag="OQP62_002556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-tetronate isomerase"
                     /protein_id="HCS1722080.1"
                     /translation="MRLEQHDIVTLDEAESVDSLTKKLGDLLVNQKLRLTSAESCPGG
                     KLASALCAAEDTPSFYGVGYVTFTDEAKAKILRVQRHSLAEHTAVSEAVVTEMAQGAK
                     DQAEVNISIAISGYGGPEGGEDGTPAGTVWFAWNINNTTFTSRQHFNGDCQEVLEKCV
                     RFALAELLFLLTKKA"
     gene            complement(13689..>13785)
                     /locus_tag="OQP62_002557"
     CDS             complement(13689..>13785)
                     /locus_tag="OQP62_002557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="stress-induced acidophilic repeat
                     motif-containing protein"
                     /protein_id="HCS1722081.1"
                     /translation="GGNFKNDPQRASEAGKKGGQNSHSGGRKSGN"
BASE COUNT         3494 a         3631 c         3291 g         3369 t
ORIGIN      
        1 ggtcatttgt gtatcactat tcataagatt aactatttac cagtggtaat aaacataaaa
       61 gtaagtcaag ggacaacaac aatactgaaa ctctaaatgt tgatattttg agtcatgccg
      121 ttacaaacaa atacgatatt cttaattgca ctactccctt ttcggggtag ttttatagaa
      181 ggatgttttt tattgttcga gagccatgct cctttagtat aaaggtgaac gtaacaggaa
      241 agataaagcg tctcaaaaac agaccatatg ggtataacta ttatgcaaaa aacgtcacta
      301 tttttttcag ccgccgcgat aacgttaact ctgatggcgt catcggcatc agcggcaacg
      361 ccaaccgccg cacaaaatga agctacgtcg accgttaaac aagaaattac agaaagcatt
      421 aaccgttacc tttattcaat agataaggca gacccaacgt taggcaagca gcttttttat
      481 gtttcaccgg aaaccagttt tattcatcca cgcggtcacg aacgcggatg gtcgcagatc
      541 gctgaaaatt tttatggcac cactatgggt aaaacgttca gcaaacgcac gttaaaactg
      601 gacgctcccc cggctattca tgtgtatggc aatgccgccg ttgcagagtt cgactggcat
      661 tttaccgcgg tacgccgtga taatgggcag actcaacaca cgacaggccg cgaaagccag
      721 gtatgggcga agataccaaa cacaggatgg cgaatcgttc atgtccacta ctccggtcca
      781 gccaaaaccg gcgttggaga aggctattaa gctttgcttt tcaggttatg gcgcagatga
      841 acattctgcg ccagttaaga cgaactcagg tcagttgata gcgcttatcc ggtatccgtt
      901 ttgccggaat atccctttca tcattcattt gcagtaaatc gatttctatc gcattgcata
      961 tcgcatccag cggtaaatca ttattttcag taccgaacgg atcttccaac tcttccgcta
     1021 acgcatccag cgcgataaac gtataagaaa tcagcaccga aataaacggc gtcatatagt
     1081 gcagatcaac caccagtgca aatggcaaca taatgcagaa aagataaacc gtacgatgca
     1141 aaattaacgt ataggcaaaa ggcaccggcg tgttggcgat gcgctcacag ccggccaaca
     1201 ctgacgacat atcatttaag cggttgttga ggctatgaaa taaaatatcg gaaagctttc
     1261 cgctgcggcg gcgaatcgcc agccactctc ccatcagcaa taagatacgg ttagcggggg
     1321 aatgggaagc gacaactttc tgtaacgcct cctggtcaag atagtttccc agaacttgcg
     1381 tttgaggctg tcgacgcaat gtcatacgca aacagtgggc aaaagcgatt tgtaaccgaa
     1441 caaaatcctc gataccgcgt tcatcaggca aggttgtttt cacctctcgc agtattgagc
     1501 gtgaagcgat catcaactgc ccccacaaat gtcgggcttc gacgtaacgc gcataacagg
     1561 cattattgcg aaacccaaga aaaatggcga tagcgacgcc cagtatgcta aacggcgcaa
     1621 gggtaaactt aatacccagc attgtgtacc agggcagcat gataataacg gcgatagaaa
     1681 gaagaaagtt aaggagcagt cgtgaaaaga ttttagataa cacggaacca tgccagacaa
     1741 atatcaggcg aatccagtgc tgttgtggtc taacgatcat gattatcttc agcaggtgaa
     1801 aaagcactgt cattaaacgt gatccagatc aaggttgcaa gcttctggtg atacacggat
     1861 tccctgctct gtagaacatt tttttgcatg gtgctgacag gcgttggaaa aaaacaacca
     1921 aatgtatgtt gtaactaaaa agacatttca gcacatgaga tatatgacgg tcaacggctg
     1981 ctatcagtgg tatagggtga tttatcgggg aaagcgtcag caacgacgcg ctaccctacc
     2041 gctgattcat ttgtatgacc agccagtaat gaataacgct gacaatatac tgttgctgcg
     2101 ctttactcag cggttctccc tgaggaatct ggtgccactt cgccaggcac ccgcgacagc
     2161 aggttgccgt cgcatgttgc gcgataaata ccggatggcc ccgcatcggc gtttgcttac
     2221 catcattcgc cgggtgagct ggcaccagtc gctgggcgat aaaatcggcg gcgtgtttat
     2281 caatcacctc cgcgccttta tcccagcaat attgtctttc ttttatcccg agacgaaagc
     2341 gcgaacgaaa tgtcgatcgc gccaggcggg caaagagcgg ttcaagcgca ttcatcagta
     2401 taccaaacgt cctaacgttt gtgttaattg ttcaagcgcg gcgatacctg ccagagagtt
     2461 tcccgcagga tccagctccg gactccagac ggcaatcgcc atttcatgcg gcacaatggc
     2521 gacaataccg ccgcccacgc cggatttagc gggcaatccc acccgccagg caaactcgcc
     2581 ggcattctga tacataccgc tggtcgccat tagcgcatta atctgccggg cctgcatggg
     2641 ggtaactacc ggctcgtcga gatgaaacgc ctcgccctga ttcgccagaa agacaaacgt
     2701 cctcgccagt tccatgcagc tcattttcaa cgcacagtag tggaagtaat tttgcaacac
     2761 ggtaggcaca tcatgatgaa aattaccgaa tgatttcatc agccaggcaa tagcggcgtt
     2821 acgggcggaa tgctcaaatt cagagcgcgc gaccgtagcg tcatatgtaa tatccgatac
     2881 gccgcaaagc gcgcgcgcaa cttccagcat ccgctgacgc ggcgcgctaa gccgcccttg
     2941 caacatgtcg cataccacca gcgcgcccgc attaataaat ggattacgcg ggatgccttg
     3001 ttccatctct aactgaacca acgaattgaa cggcgagccg gaaggatctt ttccgacacg
     3061 ctgccagatc tcctcttccg gataatgacg catcgccatc accagactga gcactttcga
     3121 aatagactga atagagaagc gttcgtgcgc atcgcccgcc tgataatgct gcccgtccac
     3181 ggtacaaatc gctattccca gctttgaacc ctcgacggac gctaatgccg gaatatagtc
     3241 agctactttg ccctggccaa tgagggggcg aacgcgctgt aaaatcgttt ctaaaattgc
     3301 attatccatg gccctggcca caacatgctc cttgctcgca ggtctgaaaa ggcctgcgag
     3361 tatagcagag ggcgccacgc gacgtcaggg cgattagacg cggttcttcc agacggtctg
     3421 cacattacaa aattcgtgta aaccaaagtg cgaaagctcg cgaccgaagc cgcttttctt
     3481 caccccgccg aatgccacac gcgcatcgct ggcgctgtac ccattaatga ataccccacc
     3541 gcactcaaga cgcgccgcca tctccgcggc cagcgtatcg tcggcggtaa agatcgtcgc
     3601 cgacaggcca aactcactgt cattcgccag cgcgagggcg tgctccgcat cttttgcaac
     3661 ggtaatggcg gcaacaggcc caaaaagctc ctgacgaaat gccgtcatgt caggagtgac
     3721 atccgccaga acggtcgcgg cataatagtt gccctccccg gcgattttct cgccgcccaa
     3781 cagtagccgt gcgccttcgg cgacggaagc ctgcacctgt tgatggagtt catcacgcaa
     3841 atcaaagcgc gccatcggcc ccagatcatt ctcttcaacc agaggatccc ccatctttaa
     3901 tgctgcggca gccgccacaa aacgatcgtt aaacgcctgc gcaatgccct cttcgacaat
     3961 aaaacgtttg gcggcggcgc agacttgtcc ggtgttttga tagcgtccgg caaccgcggc
     4021 ttttaccgcc agctcgagat cggcatcatt gagtacaata aacggatccg agccacccag
     4081 ttccagtacg cactttttca gcgccgcccc agcctgagcg ccaatcgccg cgccggcgcg
     4141 cacgctaccg gtcaccgtca ccgccgcgat tcgcggatcg ttaatcatct gactcacgcc
     4201 ctcattattg gcattcaccc atccatagac gccagcggga gtaccggctt ccgtcaagat
     4261 tcgggctatc atctgcgcgc aacccgtgac attgggcgca tgttttaaca agtagctatt
     4321 ccccgccaac agtatcggca ctgccccgcg taacacctgc cataaaggaa aattccacgg
     4381 cattatcgcc agaatgacgc ccagcggacg gtattcaatc accgcctgct gattttctac
     4441 cagcgtaggc tcaggattca gcattgccgg accatgttcc gcataccagt cgcataacgc
     4501 agcggatttc gtcacttccg cacgcgcctg ctttataggc ttacccattt cacgcgtaat
     4561 acattgcgcc atctcttctg catgagcgcg aagcgcctga ccaatatcgc gtaatgtttg
     4621 cgcccgttgc gctaccgatg tcattttcca ctttttgaaa ccgctcgccg ccagactcag
     4681 cgcatgttca atctcttgcg cgttagccca gggcattgcc gccagcgtct ggccggtcgc
     4741 aggattaacg gataacgcct gtgttgcagt catcatggtc atgttctttc tctcgttatc
     4801 aggggagttg taccatcatg acgcccttta ccctttctga aaaatgaata atattaacca
     4861 gactattcac gaattgagaa aaccatggac ctgacgcaac tggaaatgtt taacgctgtc
     4921 gctctgacgg gcagcattac gcaggcggcg gcaaaagtgc accgcgttcc gtccaatctg
     4981 accacgcgta tccgccagct tgaagccgac ctgggcgtct ctctgtttat tcgcgaaaac
     5041 cagcgactca ggctgtcacc agccgggcat aactttttac gttacagcca gcagatcctg
     5101 gcgctggttg atgaagcccg tatggtggtt gccggagagg aaccgcaagg actgttttca
     5161 ctcggcgcgt tagaaagtac tgccgccgta cgtatccccg cgctgctggc gggttataac
     5221 cagcgttacc ctaaaattca gttcgcgtta acgaccggtc cttccggcgc catgctggat
     5281 ggcgtgctcg aaggaaagct gaacgccgcc tttattgatg gcccgctaat gcatccgggg
     5341 ctggaaggta taccggctta ccaggaagag atgatgatcg tcgcgccaca cggccattcc
     5401 gtcgtttcgc gggccagcga ggtgaatggt tataacatct atgcttttcg cgccaactgt
     5461 tcttaccgac ggcatttcga aagctggttt catgccgatg gcgcgacccc cggtacgatt
     5521 cacgaaatgg agtcatatca tggaatgttg gcgtgcgtaa ttgccggcgc aggtattgcg
     5581 ctgatgccag caagtatgct caacagtatg ccaggacatc atcaggtgga agcctggccg
     5641 ttggcggaga agtggcgctg gcttagcacc tggctaatgt ggcgacgcgg ggcgatgacg
     5701 cgtcaacttg aggcctttat cgagttactt aacgcccaac tggcgagcgc cgactgaaga
     5761 cgaaacggcc tgcgaagtaa atgagaagca ggtcacaaaa tgattgtctt ttcgccagta
     5821 aacgttttaa gatcgcggtc tcaccttctc gcaactaacc cgaaatattt ttatgacaat
     5881 caatccagtt tcccgcaagg tcgcgtggct acgggtagtt acgcttgcta ttgccgcttt
     5941 tattttcaat accacagaat ttgtgccggt tggtttgcta tcagacattg ctgaaagctt
     6001 tcatatgcaa accgcgcagg tcggcatcat gctaaccatt tacgcctggg tagttgccgt
     6061 tatgtcgctg ccttttatgc ttcttaccag tcaaatggag cgccgtaagc tactcatttg
     6121 tctgtttgtt ttgtttattg ccagccatgt gctctccttt ctggcatgga actttaccgt
     6181 gctggtcatt agccgtattg gtatcgcttt cgcccacgct attttctggt cgataaccgc
     6241 ctcgctggcg atccgcctgg cccctgccgg gaaacgcgcg caggcattaa gtctgatagc
     6301 gaccggcacc gcgttggcca tggtgcttgg gctgccgata ggtcgcgttg ttggtcagta
     6361 ttttggctgg cgcaccacct tttttgccat cggcatgggc gcattaatta cgctgctatg
     6421 tctgattaag cttctaccga aattgccgag cgagcattcc ggctcactaa aaagtttacc
     6481 tttgctattc cggcgcccgg cgctaatgag cctctatgta ctaaccgtcg ttgtggtgac
     6541 tgcgcattac acagcttata gctatattga accgttcgtt cagaatgtcg ccgggctcag
     6601 tgcgaatttt gctaccgtcc tgttactgat cctcggcggc gccgggatca tcggcagcct
     6661 tgtgtttggt aaactgggta atcgtcatgc ctcgtcgctc gtcagtatcg ctattgccct
     6721 gctggttgtc tgtctgcttc tgctgctgcc tgcggcggat agcgaagcgc atctggccat
     6781 actgagcatt ttctggggca tcgcgattat ggtgataggg cttggtatgc aggtgaaagt
     6841 actggcgctg gccccggacg cgaccgatgt cgcaatggcg ctattttcag gcatctttaa
     6901 tattggtatt ggcgctggcg cgctggtagg caatcaggtg agtttgcact ggtcaatgtc
     6961 ggccatcggc tatattggcg ccatacccgc ctgtgccgcg ctggtatggg ctgtgctcat
     7021 attccgcaaa tggccagtga cgctggaaga acaaccgcat taagacattc gtctgccggg
     7081 aacaggtttc cggcagacga caatgcgcct tagtggtacg ttttaataat ttccaacacg
     7141 ccgttgataa taaattgcac gcccatacac accagcagga atcccattaa gcgggagatc
     7201 gcttcaatcc cccctttacc caccagccgc ataatagcgc cagaactgcg taagcatccc
     7261 cacaggatca ccgccacggc aagaaaaata atcggcggcg cgaccataat gacccagtcg
     7321 ggaaactcgc cgccatgacg caccgtggaa gcggaactga tgatcattgc gatggtcccc
     7381 ggtcctgcgg tgcttggcat agccagtgga acaaacgcaa tattggccgt cggttcgtct
     7441 gccagctcct ccgatttgct tttcgcttcc ggcgactcat gcgccttctg ctgcgggaaa
     7501 agcattctga agccgataaa cgccacgatt aaccccccgg cgatccgtag ccctggaatc
     7561 gaaataccga aggtgttcat aactaactgc ccggcatagt acgccaccat cataatagcg
     7621 aagacataaa ccgaagccat ataggactgc cggttgcgtt ccgcactatt catattgccc
     7681 gcaaggccaa gaaacagcgc cacggtggtt agcggattgg ctaacgggag cagtacgacc
     7741 agccccaatc caatcgcttt aaacaaatcc atcataatac tatctcttac ccatcagcgt
     7801 ttcatgaacc ggaagtataa agtgaaattg cccaggcgcg ccatttcgcc agtgtgcaag
     7861 tcaatatttt ttacaaccta taacctgtaa ttatcaatta gttacaagtt atcacagcac
     7921 aataccccgg acgcctttta gcaaatcgtg gcatcggcca attcatttag ttgacttata
     7981 cttgcctggg caatagtatc tgacaaaatt aattacttgc cggggcaacc attttgaaaa
     8041 gcaccagtga tctgttcaat gaaatcattc cgctgggtcg cttgatctac atggtaaatc
     8101 aaaaaaaaga tcgcctgtta aataactatt tatccccgct ggatatcacc gcaacacagt
     8161 ttaaagtgct gtgctcgata cgctgcgcgg gatgtattac cccggttgaa cttaaaaaag
     8221 tgctgtctgt cgatctcggc gcattgacgc ggatgctcga ccgcctgctg tgcaaaggct
     8281 ggatcgaaag actgccgaat cctaatgaca aacgcggcgt actggtgaag ctaacgccgg
     8341 acggcgcggc aatttgtgag caatgtcatc aacgaccagg gcaagacctg catcaggaat
     8401 taacaaaaaa cttaacggcg gacgaagtgg caacgcttga gtatttgctc aagaaaattc
     8461 tgccgtagac aaaaaagagg tatgacgatg tccagacgca acactgacgc tattactatt
     8521 catagcattt tggactggat cgaggataac ctggagtcgc cgctctcact ggaaaaagtg
     8581 tctgagcgtt caggatattc caaatggcac ctgcaacgga tgtttaaaaa agagaccggt
     8641 cattcattag gtcaatacat ccgcagccgt aagatgacgg aaatcgcgca aaaattaaaa
     8701 gagagcaacg agcccattct ctatctggcg gaacgctatg gctttgagtc acagcaaaca
     8761 ttgacccgga cgttcaaaaa ctattttgat gtgccgccac acaaataccg gatcaccaat
     8821 atgcatggcg aatcacggta tatgctgccg ctgaaccatg gcaactacta gtttgtttat
     8881 gcgccacgcg aagagcacca tgaaaatgct gtttcccgcc ctgccgggtc tgttacttat
     8941 cgcctccgga tatggcattg cagaacaaac tttgttacct gtggcgcaaa atagccgcga
     9001 tgtgatgctt ctgccctgtg tgggcgatcc gccaaatgac cttcaccccg tgagcgtgaa
     9061 cagcgataag tcagatgaat taggcgtgcc ctattataac gaccaacacc tttaacctct
     9121 ttgccccgtt ttgcggggca tttttttagt accgtctggc tatgacaagt ccgccgctat
     9181 taccccgcgg catggtctga aattagcgtt tgtcttctta gtaacataat gcctcatccc
     9241 ctgacgcgcg cagtacggcg cacacgaaat ccaaacacat tgatatagag tccagccata
     9301 atcagtactg cgcccgcaag ctgcatcccg gtcaacgttt ccccgagtaa caccgcggcg
     9361 ctcgccagcc cgactaccgg caccagcaat gataacggcg ccacgcgcca ggtctcatag
     9421 cgccccagta acgtgcccca gatgccgtag ccaagtatag tggcgacaaa agccagataa
     9481 agcagcgaca atatcgtcgt catatcgatg gtaataaggc tttgcgtaat gtgatccgcc
     9541 ccctccagta gcagcgatga cagcaggaac ggcaggatcg ggatcagcgc gctccagacc
     9601 accagcgaca tcaccgccgg gcgcggacta tgttgcataa tttttttatt aaagatattg
     9661 ccgcaggccc agctaaatgc cgccgccagt gtcagcataa atcccgacat cgctatatgc
     9721 tgtccgttga gactggcttc aatcaatacc agtacaccta taatcgccag ggcgatcccc
     9781 gctaactgct tacgttgtaa ccgctcacta aaaacaaacg cccccaatgc catggtaaaa
     9841 aaggcctgcg cctgtaatac caacgacgcc agtcctgcgg gcataccaaa ctttatcgcg
     9901 caaaagagaa aggcgaactg cccaaagctt atcgtcagcc catagcccag caacagcgta
     9961 agcgggactt taggccgggc gacaaagaaa attgccggaa acgccaccag taaaaacctt
    10021 aatcctgcca gcaataatgg cggcatatgg tgcaggccta ctttgatgac aacaaaattg
    10081 agcccccata cgacaaccac cagtaacgcc aaaaaaccgt ctttacgcga catcatcggc
    10141 ccctgtcatt attaaaattt tgtaaaaagg taagttatcg gaaatcagtg cgccataaca
    10201 ggacttttct ttttaccgtg agcatggcat tgaacaacac acgatgggca aaatcctgcg
    10261 ttatggtatg ttaagactac gctatagcgt acagacatca tgcttttgcg ggcacggtag
    10321 attaaaacgt cccgatacgt aacctccatt tcaggcagga aaaatgaatc caggattgag
    10381 acgttcgacg ttggctctac tcgcctcatc gctgttattg acaattggac gcggcgccac
    10441 gctccccttt atgaccatct atcttaaccg tcagtacggt ttaggcgtgg atctgattgg
    10501 ctacgcgctg accagcgcgt taacgatcgg cgtcatcttt agtcttggct ttgggattct
    10561 ggcggacaag tttgataaaa agcgctacat gttactcgcg attatcgcct tcgcctgcgg
    10621 atttatcgcc atcccaatgg tgcataatgt cgtactggtt gtcctgcttt ttgcgcttat
    10681 taactgcgcc tattcggttt tttctaccgt cctgaaggcc tggttcgccg ataacctcac
    10741 cgcgacaaca aaaacacgga ttttttcgct caactatacc gtactcaata tcggctggac
    10801 ggttggcccg ccgctcggca cgctgctggt gatgcaaagc atcaatttac ccttctggct
    10861 tgccgctatc tgttccgcat ttccgctggt ctttattcag gtatgggtga cacgttcggt
    10921 tgccgccagc gaggggaaaa atgccgctat ctggtctccc tccgttctgc tgcgcgacaa
    10981 agcattattg tggtttacgc tttcggcatt tctggcctcc tttgtggggg ttgcctttgc
    11041 gtcctgtatt tcacagtacg ttatggtcgt tgccgatagc ggcttcgcgg aaaaagtggt
    11101 agccgtcgtc ctgccggtta atgcggttat tgtggtcagt ttgcaatacg ccgtgggccg
    11161 tcgacttacc gccgtcaata ttcgaccaat gatgacgacc ggcaccgtct tttttatcgc
    11221 cgggctcatc ggatttattt tttcaggcga caatctgttt ttttgggggc tttcagcggc
    11281 agtattcacg attggcgaaa ttatttatgc ccccggcgaa tatatgttaa ttgacaacat
    11341 tgcgcctgcc gggatgaaag ccagctattt ttcagcgcaa tcgctgggct ggctgggtgc
    11401 ggcggtaaac ccgctggcca gcggcgtcat cctgacgacg cttcccgcct ggtcgctttt
    11461 cgttgtcctg ataatcgcca ttgtgttcgc ctgggcactg atgttaaaag gaatgcggat
    11521 tacccctacg caacaggcta tcacctgtta attatctgca gccagtcatg tgcgctgttt
    11581 ctggcgcatt gggttaaccc tatatattgc aggctaatta tctgctgtaa ctgcggtaat
    11641 tcaggaatat tcctgggcgc tgacgaaaat attctaatgc tttacccttc cagtaaaata
    11701 aatacgcaat tcagactttg cttaagtata aattagtact atagtttgta cgaggttttt
    11761 taaaaaagag gatgcacgct aaaataagga gaaacgagat gttaggtagt attaaccttt
    11821 ttatcgttgt attaggaatt attttatttt ccggatttct ggccgcctgg ttcagtcaca
    11881 aatgggatga ttaatgaacg gagataatcc ctcgcagagc cggccccttg ctgcatcgtt
    11941 gcgcaagggg ccgcttttgt ctggatggca ggcaaaaaaa aaccgccggt tcaccagcgg
    12001 taaatgcttg catggataga tttgtgtttt gcttatacgc taccgggcaa attcttgcga
    12061 ggataacgga tcgctaacga ctgtagcacc gtcaatatca atgaagctta aacgatacgc
    12121 aaccagacct gaataagaca ttatgggacc ttttgtcccc agggcgcttt tacaagaccc
    12181 atagtatcag gccagccgca tgccccgtat ggctgacctg gatattgccg gttagcgcgc
    12241 gttatttttg caatcggttc acgcggacaa gcggttcctt cgctttcttg tccagatttg
    12301 atccggctga acttcccgcc catcaaatac ggcggaagga attatcacgt taatctcgcc
    12361 ggacttatca cgaaatacat agcgatcgtc gcctttatga tcaataaggt tgccgcgcag
    12421 cgaaacggtc gcgccatcat gcagggtttt tgcctgttcg atggtcattt tttctgcatc
    12481 atccgtaccg cgataaccat cctcaatagc atgaggcggc ggcggtgcca cgtctttttt
    12541 taatcccccc tgatcttccg ctagcgcgta aggcattatc agaaaactta aaaatgcagc
    12601 cacctgtagt ttcatgctct ctccttaata acgtctattt gacgtattaa gtctggccgc
    12661 tatttttagt ttttacaaac atgaatttac ccgcagaata ttaagcaata aaatcaaccc
    12721 atccggatta atatgcaacc gatatcagcg ccagtgagcg cgaaagcgta acggcgtaat
    12781 agttaacttg ccacatagct gaagtcatat gcatcaacgt ctggatagca attcagaata
    12841 atcggcttta ttttttgagg ataatggcct tccacataat caatgacagt catcgccgta
    12901 agaaagtaag caagttatgc aacagcgggt ttgttggtaa ctggataaaa taatcattca
    12961 ctgacaatgt cataaaataa atatgccata cttgagaaga acgaacagat ttcatttgtc
    13021 tctgtaacgg aaaaataaac gatgagatta gaacagcacg atattgtcac ccttgatgaa
    13081 gccgaatccg tcgatagcct gacaaaaaaa cttggtgatt tactggttaa ccagaaactc
    13141 cgtctgacca gtgcagaatc ctgccctggc gggaaactgg cgtcagcatt gtgcgcagca
    13201 gaagatacgc cctcatttta cggtgtgggg tatgtcacct ttactgatga agccaaagca
    13261 aaaatcttac gcgtacaacg ccacagtctt gccgaacata ccgccgtcag cgaagcggtt
    13321 gttactgaaa tggcacaggg cgctaaggat caggctgagg tcaatatcag catagcgatc
    13381 agcggctatg gcggtccgga aggcggcgaa gatggcacgc cggcgggcac agtttggttt
    13441 gcctggaata ttaacaatac aacttttaca agccgacaac atttcaacgg agattgtcag
    13501 gaagtattgg aaaaatgcgt acgcttcgcc ctcgctgaat tgctttttct gttaacgaag
    13561 aaagcataaa caataatttc atctgaccgg tcagaataac tcccggtcag aataaaaaaa
    13621 tgcgagccta tggcccgcat cgtatgtgca atatttcaga atatatttat gaaatatcag
    13681 cagtaaaatt aattgccgga tttccgtccg ccactgtggc tattctggcc acctttttta
    13741 cccgcttcag atgcacgttg tgggtcgttt ttaaagttcc caccg
//
LOCUS       DAJVSD010000108        13524 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.108, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000108 DAJVSD010000000
VERSION     DAJVSD010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 13524)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13524)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13524
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.108"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..830
                     /locus_tag="OQP62_002558"
     CDS             <1..830
                     /locus_tag="OQP62_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YjeJ family protein"
                     /protein_id="HCS1722082.1"
                     /translation="GVIRHNDKFIALALKVKSLRNKETLLFFPVLALRDLLIGLEHRL
                     YLQYSLPEQEQEKRQKAKSSHVLKMHENIPAILREELENADVNQRVESLALSDNTEKV
                     LTFTLKLHNGSHLDLQVGEWQVEVLVMAIIHAINNAEMRELALRISSMLDFLPLYDAD
                     CLDNGNIEFDTYNQPDWKHNLYNHYLALVYRYTDEAGQSHDCGTIIKTRSQSGSKEAE
                     AISRRLLNFSPRLKKLEGKPCKVFVRTLGTGKAARLTQDQCMRALHNLRMASSQEKR"
     gene            complement(878..1231)
                     /locus_tag="OQP62_002559"
     CDS             complement(878..1231)
                     /locus_tag="OQP62_002559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463195.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4156 domain-containing protein"
                     /protein_id="HCS1722083.1"
                     /translation="MHVKYLAGIVGAALLMAGCSSSNELTAAGQNVRFVEDKPGAECQ
                     LIGTATGKQSNWFSGQHGEEGGSMRGAANDLRNQAAAMGGNVLYGVSSPSQGMLSSFV
                     PTASEMNGQVYKCPN"
     gene            complement(1475..3121)
                     /gene="groL"
                     /locus_tag="OQP62_002560"
     CDS             complement(1475..3121)
                     /gene="groL"
                     /locus_tag="OQP62_002560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120975.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HCS1722084.1"
                     /translation="MAAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSF
                     GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITE
                     GLKAVAAGMNPMDLKRGIDKAVAAAVEELKALSVPCSDSKAIAQVGTISANSDETVGK
                     LIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESP
                     FILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAV
                     KAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIID
                     GVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEK
                     KARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNEDQNVGIKVALRAMEAP
                     LRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAA
                     SVAGLMITTECMVTDLPKSDAPDLGAAGGMGGMGGMGGMM"
     gene            complement(3165..3458)
                     /locus_tag="OQP62_002561"
     CDS             complement(3165..3458)
                     /locus_tag="OQP62_002561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000027827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HCS1722085.1"
                     /translation="MSIRPLHDRVIVKRKEVESKSAGGIVLTGSAAGKSTRGEIIAVG
                     KGRILDNGTVQPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA"
     gene            3734..4975
                     /locus_tag="OQP62_002562"
     CDS             3734..4975
                     /locus_tag="OQP62_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1722086.1"
                     /translation="MNELKKELGLVQGVILLTTSLLGTGVFALPELAALAAGDISLWA
                     WPLLIILIFPIAIVFAVLGRHFPHAGGVAHFVGMAFGPRLQRVISWLFLSVIPVSFPA
                     ALHIAVGFGQALFGWQSEQLLFGELGTLGLLWFMGSRGASSSANLQAIIAGLIIALIA
                     AILWKGAIKPADITFPAANEIIFSRLCTALAIMFWGFVGIEAFTHLSSEFKNPERDFP
                     RALIIGLMLAGAIYWTCTAVVLHFGVYSDKIAATASLPLIIVHLFGIQALWIACIIGY
                     LTCFASLNMYAQSFARLIWTQMQYQPDHYLAQLSPGRLPLHALNVILACCCVSSLVVY
                     ALKINLNALIVYANGIFIMLYLLCMLAGCRLLKGRCYALAVTGCLLCLLLLVMLGWKS
                     LYAIIMLAALWLFLPKRKRMA"
     gene            complement(5034..5510)
                     /gene="fxsA"
                     /locus_tag="OQP62_002563"
     CDS             complement(5034..5510)
                     /gene="fxsA"
                     /locus_tag="OQP62_002563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein FxsA"
                     /protein_id="HCS1722087.1"
                     /translation="MRWIPFLAVFLYVYIEISIFIQVAHVLGVLMTLILVIFTSVIGM
                     SLVRNQGFKNFLLMQQKMAAGESPAAEMIKSVSLIIAGLLLLLPGFFTDFLGLLLLLP
                     PVQKHLTLKLLPHLRFSRMPGGGFSAGTGGGETFDGEYQRKDDDRDRIEHKDDRRD"
     gene            5851..7287
                     /gene="aspA"
                     /locus_tag="OQP62_002564"
     CDS             5851..7287
                     /gene="aspA"
                     /locus_tag="OQP62_002564"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HCS1722088.1"
                     /translation="MSNNIRIEEDLLGTREVPAEAYYGVHTLRAIENFYISNNKISDI
                     PEFVRGMVMVKKAAALANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGA
                     GTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRVAVYASI
                     VKLIDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKSI
                     ERTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFACVPAEDLIEATSDCGA
                     YVMVHSALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPE
                     VVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESIHILSNACYNLLEKCVN
                     GITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTE
                     AELDDIFSVQNLMHPAYKAKRYTDESEQ"
     gene            7402..8703
                     /gene="dcuA"
                     /locus_tag="OQP62_002565"
     CDS             7402..8703
                     /gene="dcuA"
                     /locus_tag="OQP62_002565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuA"
                     /protein_id="HCS1722089.1"
                     /translation="MIVVELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGT
                     IPFDVISIIMAVIAAISAMQVAGGLDYLVNQTEKLLRKNPKYITILAPIVTYFLTIFA
                     GTGNISLATLPVIAEVAKEQGIKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGH
                     GISYIHLLSVVIPSTLLAVLVMSFLVTMLFNSKLSDDPIYRKRLEEGLIELRGEKQIE
                     IKPMAKNSVWLFLLGVICVVVYAIVNSPSLGLVEKPLMNTTNAILIIMLSVATLTTIL
                     CKVETDAILNSSTFKAGMSACICILGVAWLGDTFVSANIDWIKDTAGSVIQGHPWLLA
                     VIFFFASALLYSQAATAKALMPMALALNVSPLTAVASFAAVSGLFILPTYPTLVAAVQ
                     MDDTGTTRIGKFVFNHPFFIPGTLGVVLAICSGFLLGSFML"
     gene            8824..9171
                     /gene="cutA"
                     /locus_tag="OQP62_002566"
     CDS             8824..9171
                     /gene="cutA"
                     /locus_tag="OQP62_002566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent cation tolerance protein CutA"
                     /protein_id="HCS1722090.1"
                     /translation="MLDVKSQDISIPEAVVVLCTAPDEATAQDLAAKVLAEKLAACAT
                     LLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHG
                     DTDYLSWLNASLR"
     gene            9147..10850
                     /locus_tag="OQP62_002567"
     CDS             9147..10850
                     /locus_tag="OQP62_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HCS1722091.1"
                     /translation="MAQRIFTLILLLCSTSAFAGLFDAPGRSQFVPADRAFVFDFQQN
                     QHDLTLSWQVKEGYYLYRKQISITPTKADIAAVQLPAGVWHEDEFYGKSEIYRKRLNV
                     PVTVNQAAAGATLTITYQGCADAGFCYPPETKTVPLSEVAAAIDATPTPAVTQTGETS
                     KPAAQLPFSALWALLIGIGIAFTPCVLPMYPLISGIVLGGRQRLSTGRALLLAFIYVQ
                     GMALTYTALGLVVAAAGLQFQAALQHPYVLIGLAIVFTLLALSMFGLFTLQLPSSLQT
                     RLTLMSNRQQGGSPGGVFVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYL
                     YALGMGLPLMLVTVFGNRLLPKSGPWMAHVKTAFGFVILALPVFLLERIIGEAWGLRL
                     WSLLGVAFFGWAFITSLQARRAWMRIVQIILLAAALISVRPLQDWAFGSPSAQAPAHL
                     NFTAISTVDELNQALAQAKGKPVMLDFYADWCVACKEFEKYTFSDPRVQQVLGDTVLL
                     QANVTANNAQDVALLKHLQVLGLPTILFFDAQGQEQPQARVTGFMDAATFSAHLHDRQ
                     P"
     gene            10887..11462
                     /locus_tag="OQP62_002568"
     CDS             10887..11462
                     /locus_tag="OQP62_002568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1722092.1"
                     /translation="MQREDILGEALKLLETQGIADTTLEMVAERVNRPLDTLQRFWPD
                     KEAILYDALRYLSQQVDIWRRQLLLDETFSAEQKLLARYSALSECVSNNRYPGCLFIA
                     ACTFYPDPTHPIHQLANQQKRAAHDFTHGLLTTLEIDDPAMVARQMELVLEGCLSRML
                     VNRSQADVDTAQRLAEDILRFAQCRQGGALT"
     gene            11578..11653
                     /locus_tag="OQP62_002569"
     tRNA            11578..11653
                     /locus_tag="OQP62_002569"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11611..11613,aa:Phe,seq:gaa)
     gene            11813..13072
                     /locus_tag="OQP62_002570"
     CDS             11813..13072
                     /locus_tag="OQP62_002570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000954536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HCS1722093.1"
                     /translation="MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFE
                     GKENRLAFGPYPQVTLAEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIAT
                     AWHSSCLKLWSEDHADKILTCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDV
                     AGRVRQHLTKIMRHAVQQGTIKYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKING
                     YKGRELTRLALELNLHVFLRSSELRLARWDEFNLKARIWTVPAKREAVKNVRFSERGA
                     KMKDEHLVPLSAQAVALLEQIKEITGESVFVFAGAHSMNKPMSENTINKALRVIGYDT
                     KTEVCGHGFRTMACSALNESALWSKDAIERQMSHKERNGVRAAYVHKAEHLEARMEMM
                     QWWSDYLDMSREGYVAPYIYARRHKAA"
BASE COUNT         3160 a         3512 c         3427 g         3425 t
ORIGIN      
        1 ccggcgttat tcgtcacaat gataagttta tcgcgctggc gcttaaggtg aagtcactga
       61 gaaataaaga aacactgctt ttctttcctg tgctcgcgct gcgagacttg ttgatcggcc
      121 ttgaacaccg gctttattta caatactcgc ttccggaaca agagcaggaa aaacgccaga
      181 aagccaaaag cagtcatgtg cttaaaatgc atgagaatat tccggcaata ctccgtgaag
      241 agctggaaaa cgccgatgtt aatcagcgtg ttgaatcttt agcgttgagc gataatacag
      301 aaaaagtatt aacctttacg ttaaagctgc acaatggtag ccatcttgat ttacaggtcg
      361 gtgagtggca ggttgaagtt ctggtgatgg ctattattca cgccattaat aatgccgaaa
      421 tgcgtgagct cgcattgcgt atttcttcaa tgctggactt tttaccatta tacgatgctg
      481 actgcctgga taacggtaat atcgaattcg atacctataa ccagcctgac tggaaacata
      541 atctgtataa ccattattta gcgctcgttt atcgttatac ggatgaggca ggacaatcgc
      601 atgattgcgg caccatcatt aagacccgca gtcagtcagg ctctaaagaa gctgaagcga
      661 tatcacgccg cttgctgaat ttcagcccgc gtcttaaaaa gctggaagga aaaccgtgta
      721 aggtttttgt cagaacgctt ggaaccggta aagcagcgcg tctgacgcaa gatcaatgta
      781 tgcgcgcgtt gcataatcta cgcatggcgt catcgcagga aaaacgctaa ccatatcgcc
      841 ctctgaatct ttcagagggc gttacgattc agacatgtca attcggacat ttataaacct
      901 ggccgttcat ctcgctggcc gtcgggacaa aactggacaa catgccctgc gacggactac
      961 ttacgccata cagcacgttt ccacccatcg cggccgcctg attacgcaga tcgttcgctg
     1021 cgccacgcat tgagccaccc tcttcgccgt gctggcctga aaaccagtta ctctgtttac
     1081 cagttgccgt accaataagc tggcattccg cgcccggctt atcttcgaca aagcgtacat
     1141 tttggccggc agcggtgagt tcgttgctgg agctacaacc cgccatcagc agcgcggcgc
     1201 caacgatccc tgctaaatat ttcacgtgca tgttattccc cataatcaat gagctggacg
     1261 ttttgtccgt atctgaatct tatactaaaa agatgactaa aagaaaaacc cccggtcatt
     1321 tctgcccggg ggtttctcaa ttctgggaga taagcaccca aatcattctg gttgcaggaa
     1381 ggcggccagt ttgttaatcc ccagtcactt actcaagtaa gtgactgggg ttagccaacg
     1441 catctgcagc ctgaaggatg cagggggtgg gcaattacat catgccgccc ataccaccca
     1501 taccacccat gccgccagca gcgcctaaat caggagcatc gcttttcggc aggtcggtca
     1561 ccatgcactc ggtagtgatc atcagaccag ccacagaagc cgcgtattgc agcgcagaac
     1621 gggtaacttt ggttgggtcc aagataccca tatcgatcat gttgccgtat tcttcagttg
     1681 ctgcgttgta accgtagtta ccgtcgccgc ctttaacggt gttagcgaca acagacggct
     1741 cttcgccgca gttcagcacg atctgacgca gcggagcttc cattgcgcgc agcgcaactt
     1801 tgatacccac gttctggtct tcgttctggc ctttcaggtc agcaatttta gaagcaacgc
     1861 ggatcagcgc aacgccacca ccagcaacca cgccttcttc taccgcagca cgggtcgcgt
     1921 gcagggcatc ttcaacgcgg gctttcttct ctttcatttc aacttcggtc gcagcgccaa
     1981 ctttgattac cgcaacgccg cctgccagtt tcgctacgcg ctcctgcagt ttttcacgat
     2041 cgtagtcgga ggtcgcttct tcaatctgct gacggatctg agcaacacgg ccctggatgg
     2101 cagcttcttc acccacgcca tcaatgatgg tggtggtgtc tttgttgatc acaacacgtt
     2161 tcgcctgacc caggtcttcc agggttgctt tttccagctc cataccgatc tcttcagaga
     2221 ttacggtacc gccggtcagg gtagcgatat cctgcagcat cgccttacga cgatcgccga
     2281 agcccggtgc tttaaccgca gccactttca cgatgccacg catggtgttc actaccaggg
     2341 tagccagcgc ttcgccttca acatcttcag cgatgatcag cagcggtttg cctgcttttg
     2401 caacggcttc cagaaccggc agcatttcgc ggatgttgga gattttctta tcagccagca
     2461 ggatgaacgg gctttccagt tctactgcgc cagtttccgg cttgttgatg aagtaaggag
     2521 acaggtagcc gcggtcaaac tgcatacctt caaccacgtc cagttcgtcc tgcagaccgg
     2581 taccgtcttc aacagtgatg acgccttctt taccgacttt atccatcgct tccgcgatca
     2641 gtttacctac ggtttcgtcg gagttagcgg aaatagtacc tacctgagca atcgctttag
     2701 agtcggagca cggtacggac agcgccttca gctcttcaac cgcagcagca accgctttgt
     2761 cgataccacg tttcaggtcc atcgggttca tgcccgcagc aacggctttc aggccttcgg
     2821 taatgatgga ctgcgccagt acggtcgcgg tggtggtgcc gtcgcctgca gcgtcgttcg
     2881 ctttagaggc aacttctttc accatctgcg cgcccatgtt ttcaaacttg tcttccagct
     2941 cgatttcacg cgctacggaa acaccatctt tagtgatagt cggcgcaccg aaagatttat
     3001 ccagaaccac gttacggcct ttcggaccga gggttacttt cactgcatct gccagtacgt
     3061 ttacgccgcg cagcattttc acacgagcgt cgttaccgaa ttttacgtct ttagctgcca
     3121 ttttctcttt cccttaaatt cgtatgttca gtgtcgttcg cggattacgc ttcaacaatt
     3181 gccagaatgt cgctttcaga catgatcaac acttcttcat tgtcgatctt ttcagatttc
     3241 acaccgtagc catcgttaaa aataacgatg tcgccaactt tcacgtccag cggctgtaca
     3301 gtaccgttgt ccaggatgcg acccttaccg acagcgatga tttcgccacg agttgattta
     3361 cccgctgcgg aaccggtcag tacgatgccg ccagcagatt tggactcaac ttctttacgt
     3421 ttgacgatca cacgatcatg taacggacga atactcattg atagctctcc tttgagaaag
     3481 tcattatcag ttatgggtga cgccggcccg taaacggttt cccggctggt gaccagagag
     3541 atggggatgg ggttttgccc cttcaagggg ggagatgaaa aaaaattctt ctgagcgaaa
     3601 aaagcggtaa aaacgctact tatctcacgt ttacccaagg tttagaacat cctgctataa
     3661 gaaaaggcgt gtgtgatacg cttaaaaatg tctgtcgtca cctgacgtta caatgccgcc
     3721 ggataatgag ctgatgaatg aactaaaaaa agagcttggg ttggttcagg gcgttatctt
     3781 gttaaccaca tcattattag ggactggcgt ttttgcgctt ccggagctgg ctgcgctggc
     3841 ggcaggcgac atcagccttt gggcatggcc gctgctcatt attttgattt tccctattgc
     3901 gattgtcttt gctgtgctgg ggcgtcattt tccacacgct ggcggcgtag cgcattttgt
     3961 cgggatggca tttggcccgc gtctgcaacg ggtgatcagt tggctgtttt tatcagtcat
     4021 tcctgttagt tttcccgcag ccttgcatat tgcggtgggt ttcggccagg cgctgtttgg
     4081 ctggcaaagc gaacagctct tatttgggga gctgggtact ctaggtttgc tatggtttat
     4141 gggatcgcgc ggcgccagct ccagcgccaa cctgcaagcc attatcgctg gattaattat
     4201 cgcgcttatt gccgccattc tgtggaaagg cgcgattaaa cctgcagata tcaccttccc
     4261 agccgcaaac gaaatcatct tttcccggct gtgtaccgcc ctggcgatca tgttctgggg
     4321 atttgtggga attgaggctt ttacgcattt gtcgtctgaa tttaaaaatc ctgaacgtga
     4381 ttttccgcgc gcattgatca ttggcctgat gctggccggc gccatttatt ggacctgtac
     4441 cgccgtggtg ctgcattttg gcgtctatag cgacaagata gcggcaacag catcgctacc
     4501 gcttattatt gttcatctct tcggtatcca ggcgttgtgg atagcctgca ttattggtta
     4561 tctcacctgc tttgccagcc tgaatatgta tgctcagagt tttgcgcgtc tgatatggac
     4621 gcaaatgcaa tatcagcccg atcactatct ggctcaactc tctcccgggc gccttccctt
     4681 gcacgcgtta aacgttattc tggcctgttg ttgcgtgagt tccctggtcg tctacgccct
     4741 gaagattaac ctcaatgcgc tgatcgtcta tgctaacggt atttttatta tgctctatct
     4801 actttgtatg ctggcgggct gtcgactgtt gaaagggcgc tgctatgcac tggcggtgac
     4861 gggttgtcta ctgtgcctgt tattgctagt aatgctgggg tggaaaagct tatatgccat
     4921 tattatgctg gcagcattat ggctgttttt accgaagcga aaacgcatgg cgtaagacgt
     4981 atctgttggc cggataacgc ctcacgcgac ttatccgacc agcatctcta cctttaatcc
     5041 cgacgatcgt ctttatgttc aatacgatcg cgatcgtcat ctttacgctg atactcgccg
     5101 tcaaatgttt cgccaccgcc agtacccgcg ctaaacccgc cgcccggcat ccgggaaaaa
     5161 cgtaaatgcg gcagcaactt cagcgtcaaa tgtttttgca ctggcggtaa caaaaggaga
     5221 aggccgagaa aatcggtgaa aaatcccggc aacaggagca gtaagccagc gatgatcagc
     5281 gatacactct taatcatttc tgccgccggg ctctcaccgg ccgccatttt ttgttgcatc
     5341 agcaaaaagt ttttaaaacc ctggttacgt accagcgaca taccgataac agacgtaaaa
     5401 atcaccagga ttagcgtcat caggacgcca agcacatggg cgacctggat aaagatagaa
     5461 atctcaatgt aaacatagag aaagacagct aaaaagggta tccagcgcaa aggactctcc
     5521 tgtaagtcat ggccgtctgc gacgaccatt taaatggggt tgcgattcgc atcgattcga
     5581 tatggtggtg cgtagcaaaa tttcaagtgg tttgtacacc tattttaggt agtaatacta
     5641 aagcggtgac ctatttcaca aaataataaa taaggggtaa attcccacac tttaagtgat
     5701 ccagattacg gtaggaattc tgaaccagca tatgatctcg tttatcaggc cgatggaggg
     5761 gataatcgtc ggtcagaaaa cattcgaaat cacatatatc ctgtgtgttt taaagtaaaa
     5821 atcattggca gcttgaaaaa gaaggttcac atgtcaaaca acattcgtat cgaagaagat
     5881 ctgttgggta ccagggaagt tccagctgaa gcctactatg gtgttcacac tctgagagcg
     5941 attgaaaact tctacattag caataacaaa atcagcgaca tccctgaatt tgtgcgtggc
     6001 atggttatgg taaaaaaagc ggcggcgctg gccaacaaag agctgcaaac cattcctaag
     6061 agtgtggcga atgccatcat tgccgcatgt gatgaagtcc ttaacaacgg taagtgcatg
     6121 gaccagttcc cggtagatgt ctaccagggc ggcgcgggca cttccgtcaa catgaatacc
     6181 aacgaagtgc tggccaacat cgggctggaa ctgatgggtc atcagaaagg tgaatatcag
     6241 tacctgaacc cgaacgacca cgtgaataaa tgtcaatcca ctaacgacgc ctatccgaca
     6301 ggcttccgtg tagcggttta cgcctctatc gtcaaactga tcgatgccat caaccagttg
     6361 cgtgaaggtt tcgaacgtaa agcggttgaa ttccaggaca tcctgaaaat gggtcgtacc
     6421 cagttgcagg acgccgtacc gatgacgctt ggtcaagaat tccgtgcgtt cagcattctg
     6481 ctgaaagaag aagtgaaaag catcgagcgt actgctgagc tgctgctgga agtcaacctt
     6541 ggcgcaacgg caatcggtac tggtctgaac acgccgaaag aatactctcc gctggcggtg
     6601 aaaaaactgg ctgaagtcac tggtttcgcc tgtgttccgg ctgaagatct gattgaggcg
     6661 acatctgact gtggcgcgta tgttatggtt cacagcgcgc tgaaacgtct ggcagtgaag
     6721 atgtccaaaa tctgtaacga cctgcgcttg ctctcttctg gtcctcgtgc cggcctgaac
     6781 gagatcaacc tgccggaact gcaggcgggc tcttccatca tgccagccaa agtgaacccg
     6841 gtagtaccgg aagtcgtaaa ccaggtatgc tttaaagtca tcggtaacga caccaccgtt
     6901 acgatggcgg cggaagccgg tcagttgcag ttgaacgtta tggagccggt tatcggtcag
     6961 gcgatgttcg aatccatcca cattctgagc aacgcgtgct acaacctgct ggaaaaatgc
     7021 gttaacggca ttaccgcgaa taaagaagtg tgcgaagggt acgtttataa ctccatcggt
     7081 atcgtcactt acctcaaccc gttcatcggc caccacaacg gcgacatcgt cggtaaaatc
     7141 tgtgctgaaa ccggtaagag cgtacgtgaa gttgtgctag agcgcggcct gttaacggaa
     7201 gccgagctgg acgatatttt ctccgtacag aacttgatgc acccggctta taaagctaaa
     7261 cgttatactg atgaaagcga acagtaatcg tacagggtag taccaaagag gcacgtcacg
     7321 atgacgtgcc ttttttctta caagaagtta ccaaataaca acaatttaat atcaacttgt
     7381 taaacaacaa ggaaggctaa tatgatagtt gtcgaactta tcattgtttt gctggcaatc
     7441 tttttgggcg ccagacttgg gggcatcggt attggattcg caggtgggct gggtgttctg
     7501 gtacttgccg ccatcggcgt gaagccaggg acaattccat tcgatgtcat ttccatcatc
     7561 atggcggtta tcgccgcgat ctctgctatg caggtcgcgg gcggtctgga ttatttggta
     7621 aaccagacag aaaaactgct gcgtaagaac ccgaaataca tcactatcct cgcaccgatt
     7681 gtgacctatt tcctgactat ttttgctggt accgggaaca tttccctggc aacgctgccg
     7741 gttattgctg aagtcgcgaa ggagcaggga atcaaacctt gccgtccgct ctcaaccgcc
     7801 gtggtatccg cgcagattgc gattaccgcc tcgccgattt ctgcggctgt ggtgtatatg
     7861 tcttctgtta tggaaggtca tggcattagc tacattcacc tgctgtccgt ggttatcccc
     7921 tctacgctgc tggcggtgct ggtgatgtcc ttcctggtca cgatgctgtt caactccaaa
     7981 ctgtcggacg acccgattta ccgcaagcgt ctggaagaag ggctgattga actgcgtggt
     8041 gaaaagcaga ttgaaatcaa accgatggca aaaaattccg tctggctgtt cctgctgggc
     8101 gttatctgcg tggttgttta tgcgattgtc aacagtccga gcctcggcct ggttgagaaa
     8161 ccgctgatga acaccaccaa cgctattttg atcatcatgt tgagcgtcgc aacgctgacc
     8221 accatcctgt gtaaagtgga aactgacgcc atcctcaact ccagtacctt taaagcaggg
     8281 atgagcgcct gtatttgtat tctgggcgtg gcgtggctgg gcgatacctt cgtatccgct
     8341 aacatcgact ggatcaaaga cactgcgggt agcgtcatcc aggggcatcc gtggctgctg
     8401 gccgtcatct tcttctttgc ttccgcgctg ctctactctc aggcggcaac ggcgaaagcg
     8461 ctgatgccga tggcgctggc gctgaacgtc tctccgctga cggcagtcgc ttccttcgcc
     8521 gccgtttccg gcctgttcat tttgccgacc tacccgactc tggttgcggc ggtacagatg
     8581 gatgacaccg gtacaacccg tatcggtaaa ttcgtcttta accacccgtt cttcatccca
     8641 ggcaccctgg gcgtcgttct ggctatctgc tccggcttcc tgctgggcag ctttatgctg
     8701 taagtgtttc acccgcgggg cgtatcacgc cccgcattct cccgcccttt gactaacatc
     8761 ctgccctcgt ccgttgtata gtgaccgttc acttgcgggt ctttttgttc tttcgaggtg
     8821 tttatgcttg atgttaagag tcaggatatt tccatccccg aggctgttgt ggtgctttgt
     8881 accgccccgg atgaagctac cgcccaggat ctggccgcca aagtgctggc ggaaaaactg
     8941 gccgcctgcg ccaccctcct ccccggcgcg acatcgctgt actactggga aggcaaactg
     9001 gagcaggagt atgaagttca aatgatctta aaaaccaccg tttcacatca gcaagcgctt
     9061 atcgactgcc tgaagtctca tcacccgtat caaacgcctg aacttctggt tttacctgtt
     9121 actcacggag atactgatta cctctcatgg ctcaacgcat ctttacgctg atcctgctgc
     9181 tgtgcagcac atccgccttc gccggattat tcgacgcgcc gggtcgctcg cagttcgtcc
     9241 ctgccgaccg ggcgtttgtt tttgattttc agcaaaatca acacgatctt accctctcct
     9301 ggcaggtaaa agagggttac tacctttacc gtaaacaaat cagtatcacg ccgacgaaag
     9361 cggatatcgc cgcagtccaa ctcccggcag gcgtctggca tgaagatgaa ttctacggaa
     9421 aaagcgaaat ctaccgtaag cggctaaacg ttccggtaac ggttaaccag gcggcggctg
     9481 gcgcgacatt aacgataacg taccaggggt gcgccgatgc gggattctgt tatccgccgg
     9541 aaacgaaaac ggtgccgcta agtgaagtcg ccgcggcaat agacgccacg ccgacgcctg
     9601 ctgtcaccca gacgggtgag acgtcaaaac ccgccgccca gctacctttt tctgcgctct
     9661 gggcgctact gatcggcata ggcatcgcct ttacgccctg cgttttacct atgtatccgc
     9721 tgatttccgg tattgtcctg gggggaaggc aacgtttgtc gacggggcgc gcactgctgc
     9781 tggcctttat ctatgtacaa gggatggcgc tgacctatac cgcactgggt ctggtcgtcg
     9841 ccgcggcggg attacagttt caggcggcgc tgcagcaccc ttatgtgtta atcggccttg
     9901 ccatcgtgtt caccctgctt gcgttgtcga tgtttggcct gttcacacta cagctcccct
     9961 cctcactgca aacccggctg acattaatga gtaatcgtca gcaaggcggc tcgcccggcg
    10021 gtgtttttgt tatgggggcg attgcaggat taatttgctc gccctgtacc acagcgccat
    10081 taagcgcgat cctgctttat atcgctcaga gcggcaacat gtggctgggc ggcggtacgc
    10141 tgtatttgta tgcattaggt atgggtctgc cgctaatgct ggtcaccgtg tttggcaacc
    10201 gtctgctacc gaaaagcggc ccgtggatgg cgcatgttaa aaccgctttt ggtttcgtga
    10261 tcctcgcgtt accggtcttt ttactggagc ggattattgg cgaggcttgg ggtttacgtc
    10321 tgtggtcgct gctgggcgtc gctttctttg gttgggcctt tatcaccagc cttcaggcca
    10381 gacgagcgtg gatgcgtatc gtacagatta tcctgctggc ggcagcgctc attagcgtgc
    10441 ggcctctaca agattgggca ttcggatcgc catccgcgca agctccagcg cacctcaatt
    10501 tcacggctat ttctaccgtg gatgaactca atcaggcgct ggcgcaggcc aaaggcaaac
    10561 ccgttatgct ggatttctac gccgactggt gcgtggcctg taaagagttt gaaaagtata
    10621 ccttcagcga tccgagggtc cagcaggtgc tcggcgacac ggtgctcttg caggctaacg
    10681 tcaccgctaa caatgcgcag gacgtcgcgc tgttaaagca tctgcaagtt ctcgggctgc
    10741 ccaccattct gttctttgat gcccaaggcc aggaacagcc gcaagcgcga gtcaccggct
    10801 ttatggacgc cgccaccttt agcgcgcatt tgcacgatcg ccaaccatga gcgacacttg
    10861 caaaagcaaa gacggaggag aataccgtgc aacgtgaaga tattctggga gaagccctga
    10921 aattactgga gacgcaaggg atagccgata ctacgctgga aatggtggcg gagcgcgtaa
    10981 atcgcccact cgacacatta cagcgtttct ggccagataa agaagccatt ttatatgacg
    11041 cgctacgtta tctgagtcag caggtagata tctggcgacg ccagcttctt cttgatgaga
    11101 cgttttctgc tgaacaaaag ctactggcac gctacagcgc gctttcggaa tgtgtcagta
    11161 ataaccgtta tcctggttgc ttgttcattg ccgcctgtac gttttatccc gacccaaccc
    11221 atcctattca ccaactggct aatcaacaaa aacgcgcggc acatgatttt acccatgggc
    11281 tactgaccac gctggaaatt gacgatccgg cgatggttgc aaggcagatg gaactggtgc
    11341 tggaaggttg tctcagccga atgctggtca accgcagtca ggctgatgta gataccgctc
    11401 agcggttggc ggaagatatt ctgcgttttg cacagtgccg tcagggtgga gcgctcacct
    11461 gacgggtact gattttatgc attttgcctg aaaagcaggc agtcagcgcg cttttatcac
    11521 ttttttcgtg taaagccgtt gacgaccgcg cccctttacg gtttaatgcg ccccgttgcc
    11581 cggatagctc agtcggtaga gcaggggatt gaaaatcccc gtgtccttgg ttcgattccg
    11641 agtccgggca ccacctttcc ttttttatgc ttccctatga attccaatat gtatgtaatt
    11701 caataagtta gcgtaaaaat ctttccagat gcgttttgat ttatccctac gtatccggaa
    11761 aattaggggt caggttgagg gttcattcag ttcgatgaac ggagaggccc tcatgttgac
    11821 tgacagcaag atccgcgccg cgaaacccct cgcaaaatcc tataaactca ctgatgcaca
    11881 aggtctgtac ctgacggtat ccaccagtgg ttcaaagcta tggtatttcc gctaccgttt
    11941 tgaaggtaag gaaaatcgtc tggccttcgg cccctatccg caggttacgc tggcggaagc
    12001 ccgcgaaaag cgcgatgcgg cgcgtaagct gctggtatcc ggcgtttgcc cttctctgcc
    12061 ccgcaaggcg gaaaaagccg ccgttgacgg tacgcgcacc tttcagtaca tcgccacggc
    12121 gtggcactcc agttgtctta agctgtggtc agaagaccac gcggacaaga tcctgacctg
    12181 cctgaagcgc tacgtcttcc ccgatattgg cgcaatggac attgcagagg ttgaaacccg
    12241 ccatctggcg cagcttgtta aatccatcga cgataagggc gtgcatgacg ttgccgggcg
    12301 ggtgcgccag catctgacca aaatcatgcg tcatgccgta cagcagggaa cgattaaata
    12361 taatccggct tacgatctgg atggcgtcgt gacccctgtt gtgacccaac atcaccccgc
    12421 cctgcccctg aaacgcctgc cggagctgct ggacaagatt aatggctaca aagggcggga
    12481 actgacccgt ctggcgctgg agttgaatct gcacgttttc ctgcgctcca gtgagttacg
    12541 cctcgcccgc tgggatgagt tcaacctgaa agctcgtatc tggacggtgc cagcaaagcg
    12601 ggaagcggtg aagaacgtgc gtttctcaga gcgtggcgca aagatgaagg atgagcatct
    12661 ggtgccgcta tctgcgcagg ctgtcgccct gctggagcag ataaaggaaa ttaccggaga
    12721 gtcggtattt gtttttgcgg gtgctcactc aatgaacaag ccgatgagtg aaaacaccat
    12781 caacaaggcg ctgcgcgtga ttggttacga caccaaaacc gaagtctgcg gtcacggatt
    12841 cagaacgatg gcctgtagcg ccctgaacga atccgcactg tggtctaagg acgccatcga
    12901 gcgccagatg agccacaagg agcgcaacgg cgtgcgggcg gcgtatgtgc ataaggcgga
    12961 gcatctggaa gcgcgtatgg agatgatgca gtggtggtcg gattatctcg acatgagccg
    13021 cgaggggtac gtcgcgccgt atatttatgc gcggcggcat aaggctgcct gacccagcgg
    13081 caatataatt tgttgataat gaaaaagcag atcctgattg aatccggatc tgctttttgt
    13141 attgaaagga tttaacttca attttttgat tgttaatagg aaagcctaca aaaatattct
    13201 acgtagaata tttttgtacg aaaacctatt aatacaaaat ggctcattca gatgaacatc
    13261 ttttgcagtg cttagtacta atgtatctcc aaacgaatga ttgcccacac agtgttatgt
    13321 cctatacgat aaattgaaaa aaccttatat tatcaataaa aatccgtcat tcaggatgtg
    13381 aaatgatgaa agagaaaaaa acactgctca acaataatga gaatggaact ggcttaccat
    13441 ccaagccctc aattatgagt gaaaataaac tccagaacac agtgttttcc gctattggca
    13501 gtgcatcccc agctcacaag ctgg
//
LOCUS       DAJVSD010000109        13468 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.109, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000109 DAJVSD010000000
VERSION     DAJVSD010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 13468)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13468)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13468
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.109"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..6986
                     /gene="bapA"
                     /locus_tag="OQP62_002571"
     CDS             <1..6986
                     /gene="bapA"
                     /locus_tag="OQP62_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001237670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="biofilm-associated protein BapA"
                     /protein_id="HCS1722094.1"
                     /translation="VVTVDETGTWTLPVTSALPDGVYTLTAIAADAAGNSSGVSNSFT
                     FTVDTVPLQPPVVNEILDDVAPVTGPLTDGAFTNDRTLTINGSGENGSTVTIYDNGVA
                     IGTALVTDGVWTFNTSELSEASHALTFSATDDAGNTTAQTQPITITVDITAPPAPTIQ
                     TVADDGTRVAGLADPYATVEIHHADGTLVGSAVANGTGEFVVTLSPAQTDGGTLTAIA
                     IDRAGNNGPATNFPASDSGLPAVPAITAIEDDVGSIQGNIAAGGATDDTMPTLRGTTD
                     IGSTVEVFIDGDSAGFATVDASGNWIFEIATPLSESTHYFTVQATNANGPGGLSAPVG
                     ITVDLSAPAQPVITSATDDVPGMTGTLDNGALTNDSRPTLNGTGEAGATIRILDNGVE
                     IGSATVDQSGNWRFTPNTPLESNAHIFTAVATDPAGNSGQLSDGFTLNIDAQAPDVPV
                     ITSVIDDNNQPTVPVLPGQSTDDRQPILNGTGEPGATITIFDNGTPLGTAQVGENGSW
                     TFPVPRNLSEGSHNLTVSATDPAGNTSAVSAPWTIVVDITPPAIPVLTSVVDDQPGIT
                     GNLVSGQLTNDATPTLNGRGEAGATINVYLDGNPASIGTTTVNSDGTWSFTPQTPLAN
                     GSHTFTLSATDPAGNSSAVSSGFVLTIDTTPPAAPVIASVADNTAPVTGIVPNGGSTN
                     ETRPTLSGTGEAGTTISIYNGSALVGTAQVQANGSWSFTPSTSLGAGVWNLTATATDA
                     AGNTSAASEIRSFTIDTTAPAAPVIDTVYDGTGPITGNLSSGQITDEARPVISGTREA
                     NTTIRLYDNGTLLAEIPADNSSSWRYTPDASLATGNHVITVIAVDAAGNASPVSDSVN
                     FVVDTTPPLTPVITSVSDDQAPGLGTIANGQNTNDPTPTFSGTAEAGATITLYENGTV
                     IGTTTAQPDGAWSVSTSTLASGTHVITAVATDAAGNSSPNSTAFTLTVDTTAPQTPIL
                     TSVVDDVAGGVTGNLANGQITNDNRPTLNGTAEAGSVVSIYDGDTLLGVTSANASGAW
                     SFTPTTGLNDGTRTLTVTATDPAGNVSPATSGFTIVVDTLAPTVPLITSIVDDVPNNT
                     GAIGNGQSTNDTQPTLNGTAEANSAVSIFDNGALVATVNANASGNWSWTPTASLGQGS
                     HAYSVSAADAAGNVSAASPSTTIIVDTIAPGAPGNLVINATGNRVTGTAEAGSTVTIT
                     SETGVVLGTATADGTGSFTATLTPAQTNGQPLLAFAQDKAGNTGIAAGFTAPDTRVPE
                     APIITNVVDDVGIYTGAIANGPVTNDAQPTLNGTAQAGATVSIYNNGALLGTTTANAS
                     GNWSFTPTGNLTEGSHAFTATATNANGTGSVSTAATVIVDTLAPGTPSGTLSADGGSL
                     SGQAEANSTVTVTLAGGVTLTTTAGSNGAWSLTLPTKQIEGQLINVTATDAAGNASGT
                     LGITAPILPLAARDNITSLDLTSTAVTSTQNYSDYGLLLVGALGNVASVLGNDTAQVE
                     FTIAEGGTGDVTIDAAATGIVLSLLSTQEIVVQRYDTSLGTWTTIVNTAVGDFANLLT
                     LTGSGVTLNLNGLGEGQYRVLTYNTSLLATGSYTSLDVDVHQTSAGIISGPTISTGNV
                     MADDTAPTGTTVTAITNANGVSTPVGAGGVDILGQYGTLHINQDGSYTYTLTKPTAGY
                     GHKESFTYTITQNGVGSSAAQLVINLGPAPVPGSVIATDNNASLVFDTHVSYVNNGPS
                     TQSGVTVLSVGLGNVLNANLLDDMTNPIIFNVEEGATRTMTLQGTVGGVSLVSTFDLY
                     VYRFNDAIQQYEQFRVQKGWINTLLLAGQSQPLTLTLPGGEYLFVLNTASGISVLTGY
                     TLAISQDHTYAVDSITANTTGNVLTNDVAPTDALLTEVNGVAIAATGTTEVNGLYGSL
                     IIDARGNYTYTLKNGVGADSIKTPDSFIYTLKAPNGDTDTASLNITPTARALDAINDV
                     SDTLSVATLQDTAAWLDSSVGSASWGLLGKSGSGSGTFDVATGTVLKGASLVFDVSTL
                     ITLGNLNISWAIQENGTVIRNGTVPVANITLGSATVTVNLSGLELDAGTYTLNFTGTN
                     TLAGAATITPRVIGTTVDLDNFETSGTHTVLGNIFDGSDAAGAMVQLNTVNTRLSISG
                     YNGSAATLDAAANTTSATIQGHYGTLQINLDGAYTYTLNNGVAMSSITSKEVFTYQLD
                     DKIGHTDSATLTIDMAPQIVSTNQNDVLIGSAYGDTLIYHLLNGADATGGNGADRWQN
                     FSTAQGDKIDIHELLTGWDHQAATLGNFVQVHTSGANTVISVDRDGAGSAFKSTDLVT
                     LENVQLTLNDLLQNNHLITGG"
     gene            7050..8459
                     /locus_tag="OQP62_002572"
     CDS             7050..8459
                     /locus_tag="OQP62_002572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family outer membrane protein"
                     /protein_id="HCS1722095.1"
                     /translation="MGRVAPVAIVLAFALFHHQPRGAEALPMITSEGLATDQMLPSLD
                     GSAAELPLSAAAPGNLTLNDAVNRAVNWHPSIREAVGKLLAQNEQIEVAKSKYYPQVS
                     AGVNNGYSNTYTDHGYSPSLVLSVSQMLYDFGKVASQVRAETAGAAQQQANVLLSIDT
                     VAHETANAIVQTQSWQQMVEAAEEQLVALDSIGKLIRQRSDEGATSLSDVVQTEARIE
                     SARSQLAQYQANLDSAKASLMSWLGWNSLNGINNDFPAKLARSCETATPEDRLVPAVL
                     AAWAQANVARANLDYASAQMTPTISLEPSVQHYLNDKYPSHEVLDKTQYSTWVKVEMP
                     LYQGGGLTARRNAASHAVDAAQSTIQRTRLDVRQKLMEARSQAMSLASALQILRRQQQ
                     LSERTRELYQQQYLDLGSRPLLDVLNAEQEVYQARFAELQTESQLHQLQLNYLYNTGA
                     LRQAFALNHRSIQSVEIQP"
     gene            8456..10612
                     /locus_tag="OQP62_002573"
     CDS             8456..10612
                     /locus_tag="OQP62_002573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion system permease/ATPase"
                     /protein_id="HCS1722096.1"
                     /translation="MTRAAPDVEEVLSERALSQWAQAISHVAGHYRVACSPGSIQANA
                     PWFRGKSRTTALTQLARQAGLSFHAPDIDKTAFSQWRLPLVVELRDGQLLVIEHVNGE
                     DAVDVFVIEEEGQRNRLTLSELLPEILYVAALRPLSALKDSRVDRYISRFKPDWMREL
                     VLQDIRPYLPVMVAAFLINVLSLAGIVFSMQVYDRVIPAQSYPTLYVLSFGVLVAVLF
                     GFLLREARTHIMDVLGKRADMRISDRVFGHALRLRNSAIPRSTGSFISQLRELEQIRE
                     MITSSTLATIVDLPFFFLFMIVLAIIAPPLAWIAPVAALLMILPGVALQKKLAVLANQ
                     AAHEATLRNAVLVESVQGLEDIKLMQAENRFLQQWNSYIRITGESGLRTRKLTQRLIS
                     WGMSVQSLVYAAVIMFGAPMVIEGSMTTGAVVAASMLGSRMIAPMANLCGVLARWQQV
                     KAAKMGLDNIMQLPTETQHDDSLIHRDILHGHYLFENAQFRYHNDDQRIPLRLVRLEI
                     MPGERIAILGRNGAGKSTLLQAMAGGLEMIQGDARLDNLSLSHIDMADLRRNIGFLSQ
                     NARLFFGTLRENLTLGAPHANDEQIFDALEVSGGAVFVRRLAKGLDHPIMEGGNGLSG
                     GQRQSLLLARMLLRSPNIVLLDEPSASLDEHTEREFIQRLHQWLGNRTLVVATHRVPI
                     LELVERVVVLKEGQLVMDAPKAQALNADRMQSHRRE"
     gene            10644..11807
                     /locus_tag="OQP62_002574"
     CDS             10644..11807
                     /locus_tag="OQP62_002574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HCS1722097.1"
                     /translation="MDDFDIQRERAFSGAGRIVLICSLLFLILGIWAWFGRLDEVSTG
                     NGKVIPSSREQVLQSLDGGILAQLTVREGDRVQANQIVAQLDPTRLASNVGESAAKYR
                     ASLASSARLTAEVSDLPLAFPAELNGWPDLIAAETRLYKSRRAQLADTEAELRDALAS
                     VNKELTITQRLEKSGAASHVEVLRLQRQKSDLGLKITDLRSQYYVQAREALSKANAEV
                     DMLSAILKGREDSVTRLTIRSPVRGIVKNIQVTTIGGVIPPNGEMMEIVPVDDRLLIE
                     TRLSPRDIAFIHPGQRALVKITAYDYAIYGGLDGVVETISPDTIQDKVKPEIFYYRVF
                     IRTHQDYLQNKSGRRFSIVPGMIATVDIKTGEKTIVDYLIKPFNRAKEALRER"
     gene            11879..12241
                     /gene="ssrA"
                     /locus_tag="OQP62_002575"
     tmRNA           11879..12241
                     /gene="ssrA"
                     /locus_tag="OQP62_002575"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(12350..13123)
                     /locus_tag="OQP62_002576"
     CDS             complement(12350..13123)
                     /locus_tag="OQP62_002576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001759369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase"
                     /protein_id="HCS1722098.1"
                     /translation="MTIEVQRWEDKFEIKPGVWVYVPSVEARKVGGKILQAVRNKWIP
                     PLYFYHLRTGGHLKAARLHLKSDFFAVVDIKQFFQSTSRSRITRDLKSYFTYSQAREI
                     STFSTVRNLSHSPHKHVLPFGFVQSPILATLCLDKSYFGSLLRRLNKHHDLKLSVFMD
                     DVIISSNNLAQLQAAYDEALVAMRKSGYQANMSKTQAPSSKISVFNLTLSKGVMKVTS
                     QKMSDFLIDFYSSNYEPHRIGVKNYVEAVNPGQAKLFKL"
     gene            complement(13092..13265)
                     /locus_tag="OQP62_002577"
     CDS             complement(13092..13265)
                     /locus_tag="OQP62_002577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001384722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722099.1"
                     /translation="MDTNELGLVKARVELITAMLKCATAFVGLVGAVYAVLNMAFNYN
                     NLTHDNRSSKVGR"
BASE COUNT         3129 a         3896 c         3694 g         2749 t
ORIGIN      
        1 gcgtagtcac cgtcgatgag accggtacct ggacgctgcc ggtgaccagc gcgttgccgg
       61 atggcgtcta caccctgacc gccattgccg ccgatgccgc cggaaacagc agcggcgtat
      121 cgaacagctt taccttcacc gtcgacaccg ttccgttgca gccgcccgtc gtcaatgaga
      181 tcctcgacga tgttgcacca gtgaccgggc cattaaccga tggcgccttt actaacgatc
      241 ggacgctgac tattaacggc agcggcgaaa acggcagcac cgtcacgatt tacgacaatg
      301 gcgtggcaat cgggacggcg ctcgttaccg acggggtctg gacattcaat acgtccgaat
      361 tgtcagaagc cagccatgcg ctaaccttca gcgcgactga cgatgctgga aataccacgg
      421 cgcaaaccca accgatcacc attaccgtgg atatcaccgc cccgcccgcg ccaacgatcc
      481 agacggtggc cgatgatggc acgcgcgtcg ccggacttgc cgatccttac gctaccgttg
      541 aaattcatca tgccgatggc accctggtcg gcagcgctgt cgctaatggc accggtgaat
      601 ttgtcgtcac gctcagtccg gcgcaaaccg atggcggtac gctgacggca attgctatcg
      661 atcgcgcggg gaataacggc ccggctacga attttcctgc ttccgacagc ggtctgcccg
      721 ccgtcccggc catcacggcg attgaagatg atgtcgggag catacagggg aatattgcag
      781 cgggcggcgc cacggacgac accatgccga cgctgcgcgg caccacggat atcggctcta
      841 ccgttgaagt tttcattgat ggcgattcgg caggctttgc caccgttgac gccagcggga
      901 actggatctt tgagatcgcg acgccattaa gcgaaagcac acattacttc accgtccagg
      961 caaccaatgc gaatggcccg ggcggcctgt ccgcaccggt cgggatcact gtcgatctta
     1021 gcgcgccggc acaaccggtt attaccagcg caacggatga tgtccccggc atgaccggta
     1081 cgctggataa cggcgcgctc accaatgatt cacgcccgac gctcaacgga acgggagaag
     1141 caggcgccac aatccgcatt ctggataacg gcgtagaaat cggttccgct acggtagatc
     1201 aaagcggcaa ctggcgcttc accccgaaca cgccgctgga gagcaacgca cacatcttta
     1261 ccgccgtggc gaccgatccc gccggcaata gcggtcagct ttcggatggt tttacgctga
     1321 acattgacgc gcaggcacca gatgtgccgg ttatcacctc cgtgattgac gataacaatc
     1381 aaccgaccgt cccggtgtta ccggggcaat ccaccgacga tcggcagcca atactgaacg
     1441 gaactggcga acctggcgcg acaatcacca tttttgataa cggtacgccg cttggcacgg
     1501 ctcaggtagg cgaaaacggt agctggacct tcccggtgcc ccgcaatttg tcagagggaa
     1561 gccataatct gacggttagc gctaccgatc cggcgggcaa taccagcgcg gtctccgcgc
     1621 cgtggacgat cgtggtcgat attacgcctc cggcgatccc ggttctcacc tccgttgtgg
     1681 atgaccagcc cggtattacc ggcaacctgg ttagcgggca gctaacgaac gatgcgacgc
     1741 ccaccctgaa cgggcgcgga gaggcaggcg cgacgattaa tgtctatctt gacggtaatc
     1801 ccgcgtccat cggtaccacg acggtgaata gcgacggcac gtggagtttc acgccgcaga
     1861 cgccgcttgc aaacggtagc cacacgttca cccttagcgc caccgatccg gcgggtaata
     1921 gcagcgcggt gtccagcgga tttgtgctga cgattgacac cacaccgccc gccgcgccgg
     1981 ttatcgccag cgtggcagat aatacggcgc cggtaacggg catcgtcccc aacggcggct
     2041 cgacgaacga aacccgacca acactctcgg gtaccggtga ggcgggtaca accatctcga
     2101 tttataatgg cagcgcgctg gtcggcacgg cgcaagttca ggccaacggt agctggagct
     2161 ttacaccgtc tacctcgctg ggcgcgggcg tctggaacct gacggcgaca gcaaccgatg
     2221 cggcaggcaa taccagcgcc gcgtccgaaa tacgctcgtt tactattgat accacggctc
     2281 ccgccgcgcc tgttattgat acggtctacg acggtacggg ccccattacc ggcaatctga
     2341 gttcagggca gatcacagac gaggcgcgcc ctgtcattag cggcacccgt gaagccaaca
     2401 caactattcg tctctacgat aacggcacgc tgctggctga aattcccgcc gacaatagca
     2461 gtagctggcg ctacacgccc gacgcctcgc tggcgacggg caaccatgta attaccgtca
     2521 ttgccgttga tgccgcaggc aacgccagcc ccgtttcgga cagcgttaat ttcgtcgtcg
     2581 ataccacgcc gccgctgacg ccggtaatca catcagtcag tgacgatcag gcgccaggcc
     2641 tcggcacgat cgcgaacggc caaaatacca acgatcctac gccaaccttc agcggcaccg
     2701 cagaagccgg cgccacgatc acgctctatg aaaatggtac ggtcattggc acgacaacgg
     2761 ctcagcctga cggcgcgtgg agcgtctcca cctcaacgtt ggcaagcgga acgcacgtca
     2821 tcaccgccgt cgccaccgat gccgcaggaa acagcagccc gaacagtacg gctttcaccc
     2881 tgacggtcga taccaccgcg ccgcaaacgc caatcctgac gtccgtggtg gatgacgtcg
     2941 cgggcggggt cacaggaaat ctcgctaatg gtcagataac caatgataac cgccccacgc
     3001 tgaacggcac tgccgaagcg ggcagcgtgg tcagtatcta tgatggcgac actctgcttg
     3061 gcgtcacctc ggctaacgct agcggcgcat ggagcttcac gccgacgaca gggttaaacg
     3121 acggcacgcg cacattaaca gtgaccgcca ccgacccagc aggcaacgtt agcccggcca
     3181 ccagcggttt tactatcgtg gtcgataccc ttgcgccaac ggttccgctt ataaccagca
     3241 tcgttgatga tgtcccgaac aataccggcg ccattggcaa tggacaatcg accaatgaca
     3301 cacagccgac gctcaacggt accgcggaag ccaacagcgc ggtaagtatc ttcgataatg
     3361 gcgcgctggt cgcgaccgtg aacgccaatg ccagcggcaa ctggagctgg acgccaaccg
     3421 cctcgctcgg ccagggaagt catgcctata gcgttagcgc cgccgatgcg gctggcaacg
     3481 ttagcgccgc ttcgccatcg acaacgatta tcgtggatac cattgcgccc ggcgcgcccg
     3541 gtaacctagt catcaatgct accggtaatc gggtgacggg caccgcggaa gcaggcagca
     3601 cagtgacgat tacctctgag actggtgtgg tactgggaac cgccaccgcc gacggtacgg
     3661 gcagcttcac cgccacactc acgcccgcgc agaccaatgg tcagccgcta ctggcatttg
     3721 cccaggataa agcaggcaac actggcattg ccgccggatt taccgcgccc gatacgcgcg
     3781 tgccggaagc gccgatcatc accaacgtag tggatgatgt gggtatttat accggcgcta
     3841 tcgccaacgg tccggtcact aatgacgcac aacccacatt gaatggtacc gctcaggcgg
     3901 gcgccacggt gagcatttat aacaacgggg cgctgctcgg caccaccacg gcgaacgcca
     3961 gcgggaactg gagctttacc ccgacaggca atttgaccga aggcagccac gccttcaccg
     4021 ctaccgcaac taacgccaac ggtacaggca gcgtctccac cgccgcgacg gtgattgtcg
     4081 atacgctggc gcccggtacg ccgtcaggta cgctcagcgc cgatggcggt tcactttccg
     4141 gacaggctga ggcaaacagc accgtaaccg taacgctggc ggggggcgtg acgctcacca
     4201 ccaccgccgg cagcaacggc gcatggtctc tcaccttgcc gacaaaacaa attgaaggtc
     4261 aactcattaa cgtgacggcc actgacgctg cgggtaacgc ctccggcacg ttaggcatta
     4321 ccgcgccgat tctgccgctg gcggcaaggg ataacataac cagtcttgat ctgacctcta
     4381 ccgccgtcac cagcacgcaa aactattcgg attacggcct gctgctggtt ggcgcgcttg
     4441 gcaatgtcgc ctcggttttg ggtaacgata ccgctcaggt tgagttcacc attgctgaag
     4501 gtggtacggg cgacgtcacc atcgatgccg ccgcaacggg aatcgtgctt tcgctgctca
     4561 gcactcagga gatagtggta cagcgctatg acaccagcct cggcacctgg acgacgatcg
     4621 tcaacaccgc cgttggcgac ttcgcgaatt tgcttaccct gaccgggagc ggcgttaccc
     4681 tgaacctgaa cggactgggc gaaggccagt accgggtact cacttataac accagtctgc
     4741 tcgccaccgg gtcatatacc agcctggatg tcgatgtaca ccagaccagc gcaggtatta
     4801 ttagcgggcc aaccatcagt accggcaacg tcatggctga tgataccgcg ccgacgggca
     4861 ccacggtcac cgccatcacc aacgccaacg gcgtcagtac gccggtcggc gcgggcggcg
     4921 tggatatcct ggggcaatac ggcacgctgc acattaatca ggatggcagt tacacctaca
     4981 cgctgactaa gcccacggcg ggatacggac ataaagagag cttcacctac accatcaccc
     5041 agaatggcgt cggtagcagc gccgcgcaac tggttattaa tttgggtccc gcgcctgtac
     5101 cgggcagcgt gatagcgaca gacaataacg cctcgctggt ctttgatact cacgttagct
     5161 acgtcaacaa cggcccctcg acacaaagcg gcgtcacggt attaagcgtc ggacttggta
     5221 atgtactgaa cgcgaatctg cttgatgata tgactaatcc gatcatcttt aacgttgaag
     5281 aaggcgctac gcgaaccatg acgttacagg gaaccgtcgg cggcgtctca ctggtttcca
     5341 cgttcgatct gtacgtttat cgcttcaacg atgccattca acaatatgag cagttccggg
     5401 tgcaaaaggg ctggattaac accctgctgt tagccggaca gtcccagccg ctgaccctga
     5461 cgttgcctgg cggcgaatac ttgttcgtgc tgaataccgc cagcggcatt agcgtcctca
     5521 ctggctatac gttggcgatt tcccaggacc acacctatgc cgttgacagt atcaccgcca
     5581 acaccaccgg caacgtactg accaatgatg tcgcccctac ggacgccctc ctcactgaag
     5641 taaacggcgt ggcgattgcg gcgaccggca cgacggaggt aaatgggctg tatggctcgc
     5701 tcatcattga cgcaagaggc aactatacct acacgctgaa gaacggcgtc ggcgccgaca
     5761 gcattaaaac gccggacagc tttatctata cgctcaaagc gccaaacggc gataccgata
     5821 cggcctcgct caatatcacg ccaaccgcca gggcgctgga tgcgattaat gatgtcagcg
     5881 atacccttag cgtcgccacg cttcaggata ccgctgcctg gctggactcc agcgtcggca
     5941 gcgccagttg ggggctactc ggcaaatcgg gcagcgggag cggcaccttt gacgttgcaa
     6001 cgggcaccgt acttaaaggc gcgtcactgg tctttgatgt ctccacgctc attacgctgg
     6061 gcaatctgaa tattagctgg gccattcagg agaacggaac cgtcatacgc aacggaaccg
     6121 tcccggtggc gaatatcacg ctgggcagcg cgacggtgac cgtcaacctg agcggcctgg
     6181 agctggatgc cggaacgtac acgcttaact ttaccggcac caataccctg gccggggcgg
     6241 cgacaatcac gccacgcgtc atcggcacca ccgtcgatct ggataatttt gaaacgtccg
     6301 gaacgcatac cgttctcggc aatatttttg acggcagcga cgcggcgggg gcgatggttc
     6361 agcttaatac ggtgaatact cgcctgagca ttagcgggta taacggcagc gccgccacgc
     6421 tggacgccgc ggcgaatacc accagcgcca cgattcaggg acattacggc acattgcaaa
     6481 ttaacctcga tggcgcttac acctacaccc tgaataatgg cgtcgcgatg tcgtccatca
     6541 ccagtaaaga ggtctttacc tatcaactgg atgacaagat aggtcatacg gatagcgcca
     6601 cattgaccat tgatatggcg ccgcaaatcg tcagtaccaa ccaaaacgat gttcttatcg
     6661 gctccgccta tggcgatacg ctgatttatc acctgttaaa cggcgcggac gcgaccggcg
     6721 gcaacggcgc cgatcgctgg caaaacttct ccaccgcgca gggcgacaag atcgatatcc
     6781 acgaactgct gaccggctgg gatcaccagg cggcgacgct aggtaacttt gttcaggttc
     6841 ataccagcgg cgccaatacg gtgatatccg tcgatcgcga cggcgccggc agcgcgttta
     6901 aatcaactga ccttgtcact ttggagaatg tgcagctcac gctaaatgat ctgttgcaga
     6961 acaaccacct gataaccggc ggttgataaa aagccccgaa cgccacgacg ttcggggcaa
     7021 caagcggtga tatttaaaag ggataaacta tgggaagagt cgcgcctgtc gccatcgtac
     7081 tggcatttgc tttgtttcat caccagcccc ggggcgcaga agcgctgcca atgattacat
     7141 ccgaaggatt agcaacggac cagatgcttc cttcgctgga tggctccgcc gctgagttgc
     7201 cgctcagcgc cgccgcgccg ggcaacctga cgctcaatga cgcggtcaat cgcgccgtta
     7261 actggcatcc ttctattcgc gaagccgtcg gcaaactgct cgcacagaat gaacaaatag
     7321 aggtcgccaa atcgaaatat tatccgcaag tcagcgctgg cgtgaacaat gggtacagca
     7381 atacctacac cgatcacggg tatagcccct cgctggtgct gtcggtatcg caaatgcttt
     7441 atgacttcgg caaagtggca agccaggttc gcgccgaaac cgcaggcgca gcacagcaac
     7501 aggccaacgt gttgctcagt attgataccg tcgcgcacga aaccgccaac gccattgtac
     7561 aaacgcagag ctggcagcaa atggtagaag cggcggaaga acagctcgtc gcgctggaca
     7621 gcatcggtaa acttatccgg cagcgcagcg atgaaggcgc tacgtcgcta tctgacgtgg
     7681 tgcaaaccga agccagaatc gaatccgccc gctcgcaact ggcgcagtat caggccaatc
     7741 tcgacagtgc gaaagcctca ctgatgagct ggctgggctg gaattcgctt aacggcatca
     7801 ataatgactt cccggcgaaa ctcgctcgca gctgtgagac agcgacgccc gaagatcggc
     7861 tggtgcccgc ggtactggcc gcctgggcgc aggccaacgt tgcgcgggcg aatctggact
     7921 atgccagtgc gcaaatgacg ccgacgattt cgctcgaacc ttctgtacaa cattatctta
     7981 atgacaaata tcccagtcat gaagtgctgg ataaaaccca gtattccacc tgggtgaaag
     8041 ttgagatgcc gctttatcag ggcggagggc tgactgcccg acgcaacgcc gccagccatg
     8101 cggtagacgc ggctcagtcg accattcagc gcacccggct tgatgtccgc cagaaactga
     8161 tggaggcgcg cagccaggca atgagtcttg ccagcgcgtt acaaatcctt cgtcggcaac
     8221 agcagcttag cgaacgcacg cgcgaactgt atcagcagca ataccttgac ctcggttccc
     8281 gcccgttgct cgacgtgctt aatgcggagc aggaggttta ccaggcgcgt tttgccgaac
     8341 tgcaaacgga aagccagttg catcagttac aactgaacta tctgtataac accggcgcgc
     8401 ttcgtcaggc gttcgcgtta aatcatcgca gcattcaatc cgtggagatc cagccatgac
     8461 ccgcgccgcc cccgatgtag aagaggtact cagtgagcgc gcgctaagcc aatgggcgca
     8521 ggccatcagc catgtcgccg gtcattatcg cgttgcctgt tctcccggtt caattcaggc
     8581 caacgccccg tggtttaggg gtaaaagcag aacgaccgcc ttaacgcagc tcgcgcggca
     8641 ggcgggttta tcctttcatg cgccggacat agacaaaacg gcatttagtc agtggcgatt
     8701 gccgttggtt gtcgagctcc gggacgggca gttattggtc atcgaacatg ttaatggcga
     8761 agatgcggta gacgtttttg tgattgaaga agagggtcag cgtaaccgcc tgacgctcag
     8821 cgagttattg ccggagatcc tctatgttgc cgcgctacgc ccgctatcgg cgctcaagga
     8881 tagccgcgtc gaccgctata tctcccgctt taaacccgac tggatgcgcg agctggttct
     8941 gcaggatatt cgcccttatt taccggtaat ggtcgccgcc tttctgatta acgtgctgtc
     9001 tctggccggg attgtgttct ctatgcaggt ttacgatcgg gtgatccccg ctcagtcata
     9061 tcctaccctg tacgtgctct ccttcggcgt gctggtagcg gtgctgttcg gttttctgct
     9121 gcgtgaagcg cgtacgcaca ttatggacgt gctcggtaaa cgcgccgata tgcgcatttc
     9181 cgatcgggta ttcggtcatg cgttaaggct gcgcaacagc gctatccccc gttccaccgg
     9241 cagttttatc tcgcagttac gtgaactgga gcagatccgc gagatgatta cctcttcaac
     9301 gctggcgacc attgtcgatc tgcctttctt tttcctgttt atgatagtct tggcgattat
     9361 tgccccaccg ctggcatgga tagcgcccgt ggcggctctg ctgatgatcc tgccgggcgt
     9421 cgcactgcaa aaaaaactgg ctgtcctcgc caaccaggcc gcccacgaag cgacgctacg
     9481 caatgcggtc ttggtcgaaa gcgttcaggg gctggaagat attaaactga tgcaggcgga
     9541 gaaccgcttt cttcagcagt ggaatagcta tatccgtatt accggcgagt cgggtctacg
     9601 cacccgcaaa ctcacgcaaa ggcttatcag ttgggggatg tcggtacaaa gtctggtgta
     9661 tgccgcagtg attatgttcg gcgcgccgat ggtcattgaa ggcagtatga ctaccggcgc
     9721 cgtggtcgcc gcgtcgatgc tcggctcacg gatgatcgcg ccaatggcta acctgtgcgg
     9781 cgtgctggcg cgctggcagc aggtgaaagc ggcgaagatg ggtctcgaca acattatgca
     9841 actgcccact gagacacagc atgacgatag cctgatacac cgcgacatcc tccacgggca
     9901 ttacctcttt gaaaacgctc agtttcgtta ccataacgac gatcaacgca taccgctgcg
     9961 cctcgtgcgt ctggagatca tgccaggcga gcggattgcg atactggggc gtaacggtgc
    10021 gggtaaatcc acacttttac aggcgatggc gggcggcctg gagatgattc agggagatgc
    10081 ccggcttgat aatctcagct tgtcgcacat cgatatggcg gatttacgcc gcaacatcgg
    10141 ctttcttagc cagaacgcgc ggcttttctt cggcacccta cgagagaacc tgacgctcgg
    10201 cgcgccgcac gccaacgatg aacagatttt tgacgcgctc gaagtcagcg gcggcgccgt
    10261 cttcgtcagg cggctggcaa aagggttgga tcatcccatt atggagggtg gtaacggcct
    10321 gtccggcggg cagcgtcagt ccctgttgct ggcgagaatg ctgctgcgct cccccaatat
    10381 tgtgctactt gacgaaccca gcgcctcgct ggacgagcat acggaacgag agtttattca
    10441 gcggttacat cagtggcttg gcaaccgtac cctggtcgtc gcaacgcacc gggtaccaat
    10501 actggagctg gttgagcgtg tcgttgtcct gaaagaagga caactggtga tggacgcgcc
    10561 aaaagcgcag gcgcttaacg cggatcggat gcaaagtcac cgtcgggagt agaaaaatga
    10621 aaatcaatca gcatgatgcc gcgatggacg atttcgatat tcagcgtgaa cgggcgtttt
    10681 ccggcgcggg tcgtattgtt ctgatctgct cactgttatt tctcattctc ggcatctggg
    10741 cgtggtttgg ccgactggat gaggtttcca ccggcaacgg gaaagtaatc cccagttcac
    10801 gcgaacaggt tctgcagtcg ctggatggcg gcattctggc gcagttgacg gtgcgggaag
    10861 gcgacagagt tcaggctaac cagattgtcg cccagcttga tccgacgcgt ctggcgtcca
    10921 atgttggtga aagtgcggca aaatatcgcg cttcactcgc ctccagcgca cggttaaccg
    10981 cggaagtcag cgacttacct ctcgccttcc ccgctgagct gaacggctgg ccggatctga
    11041 ttgccgcaga gacgcgtctc tataaaagcc gccgcgcgca gctggccgat accgaagccg
    11101 agctacggga tgcgctggcg tcggttaata aagagctgac cattacccag cggctggaga
    11161 aaagcggcgc ggccagtcat gttgaagtgc tacgcctgca acgacaaaaa agcgatttag
    11221 gcttaaaaat taccgatctg cgctcacaat attatgtgca ggcacgcgaa gcgttatcaa
    11281 aagcgaacgc tgaggtcgat atgctctccg ccattttaaa aggacgcgag gattccgtca
    11341 cccgccttac catacgttcg ccggtacgcg gcattgttaa aaatatccag gtcacgacga
    11401 ttggcggcgt gatcccgcct aacggtgaga tgatggagat agtgccggta gacgatcgtc
    11461 tgttgattga aacccgcctt tcgccgcgtg atatcgcctt tattcatccc ggccaacgcg
    11521 cattggttaa aattactgct tacgattacg ccatttacgg cgggcttgac ggcgtggtgg
    11581 agaccatttc accggatacc attcaggata aagtgaaacc ggaaattttc tactatcgcg
    11641 tgtttatccg cacccaccag gactatctac aaaataaatc aggacgccgt ttttcgattg
    11701 ttccaggcat gatcgccacg gtggatatca aaaccggtga aaaaaccatt gtcgactatt
    11761 taatcaaacc gtttaatcgc gcgaaagaag cgctgcgcga gcggtaaatc gctgaagata
    11821 agaagatacg ggggctggtc acgcgtgtca caagtctgtt atacttacct tacacattgg
    11881 ggctgattct ggattcgacg ggatttgcga aacccaaggt gcatgccgag gggcggttgg
    11941 cctcgtaaaa agccgcaaaa aaatagtcgc aaacgacgaa acctacgctt tagcagctta
    12001 ataacctgct tagagccctc tctccctagc ctccgctctt aggacgggga tcaagagagg
    12061 tcaaacccaa aagagatcgc gcggatgccc tgcctggggt tgaagcgtta aaacgaatca
    12121 ggctagtctg gtagtggcgt gtccgtccgc aggtgccagg cgaatgtaaa gactgactaa
    12181 gcatgtagta ccgaggatgt aggaatttcg gacgcgggtt caactcccgc cagctccacc
    12241 aaataaatca aggggttacg tgaaagcgta gccctttttt ctttggtagt ggcggcaaaa
    12301 tggcggcagg cattcagtca agcccagttg ctactacatg cgatcgcaat tacaacttaa
    12361 agagtttcgc ttgccctgga ttaacagctt cgacgtagtt tttgacccct attctgtgcg
    12421 gctcataatt gcttgaatag aaatcaatca ggaagtcact cattttctga gatgtgactt
    12481 tcataactcc cttactcaaa gttaaattaa acacgctaat ctttgacgat ggtgcctgag
    12541 ttttactcat gttggcttga taaccagatt tacgcattgc cactagtgct tcgtcgtaag
    12601 ccgcttgtaa ttgggccaaa ttgtttgacg agatgatcac atcatccata aacacactta
    12661 gcttgagatc atgatgtttg ttcaatcggc gtagtaagct accaaaataa cttttatcta
    12721 agcagagggt tgcaagtatt ggagattgaa caaaaccaaa agggaggaca tgcttatgtg
    12781 gactatggga caagtttctt acagttgaaa atgttgagat ttcccgcgct tgagaatagg
    12841 tgaagtagct ctttagatca cgggtgatac gactacggct cgttgactga aaaaattgtt
    12901 taatatcaac aacggcaaaa aaatcacttt ttaagtgtaa tctggcagct ttaagatgcc
    12961 caccagttct tagatggtaa aaatagagtg gcggaatcca cttgtttctg acagcctgaa
    13021 gtatcttccc tccgacttta cgtgcctcaa cgcttgggac ataaacccaa accccgggct
    13081 taatctcaaa tttatcttcc cacctttgaa cttctattgt catgagttaa attgttgtag
    13141 ttgaaggcca tgttaagaac ggcgtaaacc gcaccaacta agccaacaaa cgcggttgcg
    13201 catttgagca tagcggtgat cagttcaaca cgcgccttaa ctaagccaag ttcgtttgta
    13261 tccataactt gttcctccat agatacctga cgtctcttag cgcaagcgca tggccctaac
    13321 taaataaaaa ataacaacca gttagcccag aaagcttaac aagtcggcgt ccgattacat
    13381 ggcaaccagg taatcggtcc gcagtcgcaa agcgacaaac tacatatcta cggagtgggg
    13441 ataaatcccc gctaacgtca ggcattgt
//
LOCUS       DAJVSD010000110        13454 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.110, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000110 DAJVSD010000000
VERSION     DAJVSD010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 13454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13454
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.110"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            171..2303
                     /gene="igaA"
                     /locus_tag="OQP62_002578"
     CDS             171..2303
                     /gene="igaA"
                     /locus_tag="OQP62_002578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular growth attenuator protein IgaA"
                     /protein_id="HCS1722100.1"
                     /translation="MSTILIFIAALLACSLLAIWRFRVKSRRGSLPWFSAFQDAQTRK
                     LLPEERSAVENYLDNLSQIQQVPGPTGASAAPISLTLNAESNSVVILTHSITRYGITT
                     DDPNKWRYYLDSVEVHLPPFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESR
                     GYALQNTASTQASIRGEESEQIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFF
                     CLITPDVFVPWMIGGAILLLAAGLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQE
                     QINNISLGIIDLIYPAHWQPYITQDLGQQTDIDIYLDRHVARQGRFLSLHDEVKNFPL
                     QHWLRSTVIAIGSLLVLFMLLFWIPLDMPIKFTLSWMKGAQTIEATTVKQLEKAGVRV
                     GDTLHLSGKGMCNIHSGATWSGQSNSPFMPFDCSQIIWNDAPALPLPESDLVNKAMAL
                     SQAVNRQLHPKPEDDSRVSASLRSAIQKSGMVLLDDFGDIVLKTADLCAAEDECVRLK
                     NALVNLGNSKDWNALVKRANAGKLDGVNVLLRPVSAESLENLVTTSTAPFISRETARA
                     AQSLNSPAPGGFLIASDEGSELVDQAWPSTPLYDYPAQEQWSAFQRLAQTLMQTPFSA
                     EGIVTSVYTDANGTQHISLHRIPDKSGWWRYLGTTLLMLAMIVSAVYNGIQAFRRYQR
                     HRTRMADIQEYYESCLNPRLTVSPENLI"
     gene            2368..3036
                     /gene="yrfG"
                     /locus_tag="OQP62_002579"
     CDS             2368..3036
                     /gene="yrfG"
                     /locus_tag="OQP62_002579"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006893127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP/IMP nucleotidase"
                     /protein_id="HCS1722101.1"
                     /translation="MHIDIDWQNVDTVLLDMDGTLLDLAFDNYFWQKLVPETYGAQQG
                     ISPQDAQEYIRQQYHAVQHTLNWYCLDYWSERLGLDICAMTTAQGPRAVLRDDTVPFL
                     NALKASGKRRILLTNAHPHNLAVKLEHTGLASHLDLLLSTHTFGYPKEDQRLWRAVTE
                     ETGISAEKTLFIDDSEPILDAAARFGIRYCLGVTNPDSGLAEKHYTRHPSLNDYRRLI
                     PSLK"
     gene            3047..3448
                     /gene="hslR"
                     /locus_tag="OQP62_002580"
     CDS             3047..3448
                     /gene="hslR"
                     /locus_tag="OQP62_002580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated heat shock protein Hsp15"
                     /protein_id="HCS1722102.1"
                     /translation="MKEKSSVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK
                     PSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAVALYEETAESVEKREKMAQAR
                     KLNALTMPHPARRPDKKERRDLLRFKHGDSE"
     gene            3473..4351
                     /gene="hslO"
                     /locus_tag="OQP62_002581"
     CDS             3473..4351
                     /gene="hslO"
                     /locus_tag="OQP62_002581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417860.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HCS1722103.1"
                     /translation="MPQHDQLHRYLFENFAVRGELVTVSETLQQILDNHNYPQSVKTV
                     LAELLVATSLLTATLKFAGDITVQLQGDGPLSLAVINGNNQQQMRGVARVQGDIPDNA
                     DLKTLVGNGYLVITITPEEGERYQGVVGLEGDTLAACLEDYFLRSEQLPTRLFIRTGD
                     VDGKPAAGGMLLQVMPAQNAQAEDFDHLAMLTETIKSEELLTLPANDVLWRLYHEEEV
                     TLYDPQEVEFKCTCSRERCAGALKTLPDEEVDSILAEEGEIDMHCDYCGNHYLFNAMD
                     IAEIRNNASPADPQVH"
     gene            complement(4462..6171)
                     /locus_tag="OQP62_002582"
     CDS             complement(4462..6171)
                     /locus_tag="OQP62_002582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HCS1722104.1"
                     /translation="MESVALSRTTRWGMLLTGLLQGVLCYLLMAWLVPQNSDWLFYGM
                     PATIALSSMLLLTVVSFKQRALWGWLGLIFVVVLAMSGWLKWQVEAVEKWRLAELLWL
                     YGLRLVLMAMLVLPWMQYQLHSQTGSARYPQFYLRLWHNVLTLFIVLVANGLFWLVLL
                     LWSALFRLVGIRFFSTLFFETEAFIYVTIGLITALAVILARTQSRLVAAVQKLLTLIA
                     TGLLPVVSLLALLFIVTLPFTGLEAISARVSATGLLSTLTLMLLLLVAIVNEPQKRVL
                     PYPRVLRGMISASLCVAPIYMLLAGWALWVRIQQYGWTPDRLYGALTASVLLVWSFGY
                     LIGLLRRGRDPDEWQGKVILSVSLLTLVILLLLASPVLDVWRISVNSHMARYHSGKIT
                     ADQISLYMLDHSGKPGQEALKSLRDDEAFTQNRKRNRELMTFLQRNKVPPTADDLARV
                     VMIAPGSQKPDAAFWAFVKEQSYSDASCLEPDACVLVSQDLNGDGQPEQVLYNFIVAE
                     SQVYGLKEGKWTQKAFARLPDGFSKTQLLHAIAGHRLDSAPKAWRDIIVDGQRLDVDY
                     YNE"
     gene            6551..8170
                     /gene="pckA"
                     /locus_tag="OQP62_002583"
     CDS             6551..8170
                     /gene="pckA"
                     /locus_tag="OQP62_002583"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462403.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HCS1722105.1"
                     /translation="MRVNNLTPQDLKAYGINDVQDIVYNPSYDTLYQEELNPGLEGYE
                     RGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTLWWSDKGKGKNDNKPLSQETWQ
                     HLKGLVTHQLSGKRLFIVDAFCGANADTRLSVRFITEVAWQAHFVKNMFIRPTDEELV
                     GFKPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERIQLIGGTWYGGEMKKGMFSVM
                     NYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDG
                     VFNFEGGCYAKTIKLSKEAEPEIYHAIRRDALLENVTVREDGTVDFDDGSKTENTRVS
                     YPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTANQTQYHFLSGFTAKLAG
                     TERGVTEPTPTFSACFGAAFLTLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRIS
                     IKDTRAIIDAILNGSLDNAETFRLPLFDLAIPTELPGVDTHILDPRNTYASPEQWQEK
                     ATALAKLFIENFEKYTDTPAGEALVSAGPKL"
     gene            complement(8245..9597)
                     /gene="envZ"
                     /locus_tag="OQP62_002584"
     CDS             complement(8245..9597)
                     /gene="envZ"
                     /locus_tag="OQP62_002584"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     EnvZ"
                     /protein_id="HCS1722106.1"
                     /translation="MRRMRFSPRSSFARTLLLIVTLLFVSLVTTYLVVLNFAILPSLQ
                     QFNKVLAYEVRMLMTDKLQLEDGTQLVVPPAFRREIYRELGISLYTNEAAEEAGLRWA
                     QHYEFLSHQMAQQLGGPTEVRVEVNKSSPVVWLKTWLSPNIWVRVPLTEIHQGDFSPL
                     FRYTLAIMLLAIGGAWLFIRIQNRPLVDLEHAALQVGKGIIPPPLREYGASEVRSVTR
                     AFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMGEEDGYLAESINKDIEE
                     CNAIIEQFIDYLRTGQEMPMEMADLNSVLGEVIAAESGYEREINTALQAGSIQVKMHP
                     LSIKRAVANMVVNAARYGNCWIKVSSGTESHRAWFQVEDDGPGIKPEQRKHLFQPFVR
                     GDSARSTSGTGLGLAIVQRIIDNHNGMLEIGTSERGGLSIRAWLPVPVARVQGTTKEA
                     "
     gene            complement(9594..10313)
                     /gene="ompR"
                     /locus_tag="OQP62_002585"
     CDS             complement(9594..10313)
                     /gene="ompR"
                     /locus_tag="OQP62_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014646135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator OmpR"
                     /protein_id="HCS1722107.1"
                     /translation="MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL
                     TRESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDY
                     IPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMP
                     LTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAH
                     PRYIQTVWGLGYVFVPDGSKA"
     gene            10539..11012
                     /gene="greB"
                     /locus_tag="OQP62_002586"
     CDS             10539..11012
                     /gene="greB"
                     /locus_tag="OQP62_002586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015703675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HCS1722108.1"
                     /translation="MKTPLITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSE
                     NADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGDTLK
                     FRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPVGEANWYVNAIEYVK"
     gene            11111..13441
                     /locus_tag="OQP62_002587"
     CDS             11111..13441
                     /locus_tag="OQP62_002587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312276.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HCS1722109.1"
                     /translation="MMNDSFCRIIAGEIQANAGQVEAAVRLLDEGNTVPFIARYRKEI
                     TGGLDDTQLRNLETRLGYLRELEDRRQAILKSISEQGKLTDELAGAINATLSKTELED
                     LYLPYKPKRRTRGQIAIEAGLEPLADLLWNEPSHDPDVKAAKYIDGDKGVADTKAALD
                     GARYILMERFAEDAALLAKVRDYLWKNAHLVATVVSGKEEEGAKFRDYFDHHEPIANV
                     PSHRALAMFRGRNEGILQLSLNADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRK
                     GVVSWTWRIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLMAAPAGLRATMGLDP
                     GLRTGVKVAVVDGTGKLVATDTIYPHTGQAAKAATVIAALCEKYHVELVAIGNGTASR
                     ETERFYLDVQKQFPNVTAQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRL
                     QDPLAELVKIDPKSIGVGQYQHDVSQTQLARKLDAVVEDCVNAVGVDLNTASVPLLTR
                     VAGLTRMMAQNIVAWRDENGQFQNRQQLLKVSRLGPKAFEQCAGFLRINHGDNPLDAS
                     TVHPEAYPVVERILAATQQALKDLMGNSNELRHLKAADFTDDKFGVPTVSDIIKELEK
                     PGRDPRPEFKTAQFADGVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISS
                     LSTKFVDDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPGETAARRGGGADRAQ
                     GNRPASKAAKPRGRDAQPAGNSAMMDALAAAMGKKR"
BASE COUNT         3263 a         3788 c         3595 g         2808 t
ORIGIN      
        1 atttgctgat attccgtttt tggtggtatt gctatgattt gccttcactg ggatgcgctt
       61 tacaatgctc aagttcaact ccacgcttgc cgatagccaa ccacagaaaa atgtttattg
      121 gacagggtgc gactgaccac gcctgacaga cttagtaaga tggggaaagc atgagcacca
      181 ttctgatttt tatagctgct ttgctggcct gctctctact ggcaatatgg cggttccggg
      241 taaagtccag acgagggagc ttaccgtggt tcagcgcctt tcaggacgcg caaacgcgta
      301 aactgttgcc cgaagagcgc agcgcggtag aaaactatct cgataacctt agccagatcc
      361 agcaagttcc ggggccgaca ggcgccagtg ctgcgcccat ctcgctgacg ctgaacgcgg
      421 aaagcaacag tgtcgtgata ctgacccact ccatcacccg ctacggcatt accactgacg
      481 atcctaataa atggcgctac tacctcgact ccgtcgaagt ccatctgccg cctttctggg
      541 aacagtacat caatgatgaa aacaacgttg agctaatcct cacggatacg ctgccgctgg
      601 tgatctcttt aaacggccat acgctgcaag agtatatgca ggagtcgcgc ggctacgcgc
      661 tacagaatac ggcctctacg caggcgtcga ttcgcggcga agagagcgag cagattgagc
      721 tgttgaacat ccgtcaggag acccacgaag aatatgcgct cagccgcccg gctggcttgc
      781 gcgaagcatt gttaatcgtc gcctcctttt tgttattctt tttctgtctg ataacgccag
      841 acgtttttgt accgtggatg ataggcggcg cgatcctgct gctggcagcc ggactttggg
      901 ggctttttgc gccgccgtcg aaaagcgcgc tgcgggaaat tcactgtctg cggggaacgc
      961 cccgccgctg gggactgttt ggggagaata atcaggagca gattaacaat atttccctgg
     1021 gcatcatcga ccttatttac cctgcccact ggcaacctta cattacgcag gatcttgggc
     1081 aacaaacgga tattgatatt taccttgatc gccatgtcgc ccgccagggc cgttttttat
     1141 ccctgcatga tgaagtgaaa aacttcccgt tgcagcactg gttacgcagc actgttattg
     1201 ctatcggttc gctgctggtg ttgtttatgc tgctgttctg gatcccgttg gatatgccaa
     1261 tcaagttcac gctatcgtgg atgaaaggcg cgcaaaccat tgaagcgaca acggtaaaac
     1321 agcttgaaaa ggctggcgta cgggtgggcg atacgctgca cctgagcggt aaaggaatgt
     1381 gtaatattca ttccggggcg acctggagcg ggcagtctaa ctcaccgttt atgccgttcg
     1441 attgctcgca aatcatctgg aatgacgcgc ctgcgctacc gctgccggaa tcagatctgg
     1501 tgaataaagc gatggcgcta agccaggcgg taaatcgtca gctccatcca aaacccgaag
     1561 acgactcgcg cgtaagcgca tctttacgct ccgcgatcca aaaatcgggc atggtattat
     1621 tagatgactt tggcgatatt gttctgaaaa ccgctgattt gtgcgcggcg gaagacgagt
     1681 gcgtgcgcct gaaaaatgcg ctggttaatc tcggtaacag taaggactgg aacgcgctgg
     1741 tgaaacgcgc gaacgccggc aaactggacg gcgtcaacgt gctgctacgc cccgtaagcg
     1801 cagagtcgct ggaaaatctg gtcacgacct caacggcgcc gtttatttct cgcgagaccg
     1861 cgcgtgccgc ccagtcgctg aatagccccg ctcccggcgg attcctgatc gccagcgatg
     1921 aaggcagcga actggttgat caggcctggc cgtcaacgcc gctgtatgac tatcccgcgc
     1981 aggaacagtg gagcgccttc cagcgtctgg cgcaaacgct catgcagacg ccatttagcg
     2041 ccgagggcat tgtcaccagc gtgtataccg atgccaacgg cacgcagcat atcagcctgc
     2101 atcgtatccc cgataaatcc ggctggtggc gttacctcgg caccacgctg ctgatgctgg
     2161 caatgatagt gagcgcggtc tacaacggca ttcaggcgtt caggcgttat caacgccacc
     2221 gtacccgtat ggcggacatc caggaatact atgaaagctg cctcaatccc aggttaaccg
     2281 tctctccgga aaatctcatc tgatagcgcc gccgtgcgac agggtatgct accctgtcgc
     2341 gcaaattgcg ttaccctgga gttccccatg catattgata ttgactggca aaacgtggat
     2401 accgttttgc tggatatgga cggcacgctg ctcgatctcg cgttcgataa ctatttctgg
     2461 caaaagctgg taccggaaac ctacggcgcg cagcagggta tttcgccgca ggacgcgcag
     2521 gaatatattc gccagcagta tcatgccgta cagcatacgc taaactggta ctgtctggat
     2581 tactggagcg agcgtctggg tctggatatt tgcgccatga cgacggcgca agggccgcgc
     2641 gccgttttgc gcgacgatac cgtaccgttt ctgaatgcgt taaaagccag cggaaaacgt
     2701 cggattctgc tcaccaatgc gcatccacat aacctggcgg tgaagctgga gcataccggt
     2761 ctggcctcac accttgattt attactttcc acccacacat ttggttatcc caaagaggat
     2821 cagcggttat ggcgcgctgt cactgaggaa acgggaataa gcgcagagaa aacgctgttt
     2881 atcgatgaca gcgaaccgat tctcgacgcc gccgcccggt ttggtattcg ctactgtctt
     2941 ggcgtgacga atcccgattc cggtctggcg gaaaagcact atacgcgcca tccgtccctg
     3001 aacgactacc gccgtctgat cccctcgctg aagtgaagga gacgccatga aagaaaagtc
     3061 ctccgttgag gtcagactgg ataaatggct gtgggccgcg cgtttttata aaacccgcgc
     3121 gctggcccgc gagatgattg aaggcggtaa ggtgcattac aacggccagc gcagtaagcc
     3181 gagcaaaatc gtcgagctga acgcaaccct taccctgcgt cagggaaatg acgaacggac
     3241 ggtgatcgtt aaagccatca ccgaacagcg ccgtccggcc agcgaagccg tcgctctgta
     3301 tgaagagacg gcggaaagcg tggaaaaacg cgaaaaaatg gcgcaggcgc gcaagcttaa
     3361 cgccctgacc atgccgcatc cggccaggcg accggacaag aaagagcgcc gcgacctgtt
     3421 acgatttaaa cacggcgaca gcgaataact gtcacccgca agagagatga ttatgccgca
     3481 acatgaccaa ttacatcgtt atctgtttga aaactttgcc gttcgcggcg agctggtgac
     3541 cgtttcggaa accttgcaac agatcctcga caatcataac tatccgcagt cggtgaaaac
     3601 cgtactggcc gaactgctgg tcgccactag cctgctgacc gcgacgctga agtttgccgg
     3661 tgacattacg gtacagctcc agggcgacgg gccgttaagc ctggcggtga tcaatggcaa
     3721 taatcagcag cagatgcgcg gcgtggctcg cgttcagggc gatatccctg acaatgcgga
     3781 tctcaaaacg ctggttggca acggctatct ggtgatcacc attacgccgg aagagggtga
     3841 acgctatcag ggcgtggtgg gtctggaagg cgatactctg gcggcgtgcc tggaagatta
     3901 cttcctgcgc tccgagcagt tgccgacgcg cctgtttatc cgtaccggcg atgtcgacgg
     3961 taaaccggcg gcaggtggaa tgttgctcca ggtgatgccg gcacagaacg cgcaggcgga
     4021 ggatttcgac catctggcca tgttgacgga aaccattaaa agcgaagagc tgctgacatt
     4081 accggcaaat gacgtgctgt ggcgtttgta tcacgaagaa gaagtcacgc tctacgatcc
     4141 gcaagaggtt gaattcaaat gcacctgttc acgcgaacgt tgcgcgggcg cgctgaaaac
     4201 attgccggat gaagaagtgg acagcattct ggcggaagaa ggcgaaatcg atatgcactg
     4261 cgattactgc ggcaatcatt acctgttcaa tgcgatggat atcgcggaga tccgtaacaa
     4321 cgcctctcct gccgatccac aggttcatta atcgcctcgt agtcggcagc gtcattgcct
     4381 gatggcgcta cgcttatctg gcctacagca tcccgctccg taggctggat aaggcattta
     4441 tgccgccatc cggcaaaaag cttactcgtt gtagtaatcc acatccaacc gctgaccatc
     4501 aacaatgata tcgcgccaag ctttgggggc tgagtctaac cgatgcccgg caatcgcgtg
     4561 caacagttgc gtcttagaaa acccgtccgg caatcgggcg aacgctttct gcgtccattt
     4621 cccctctttt aagccgtaga cctggctctc ggcaacaata aagttataca gcacctgctc
     4681 aggctgaccg tcgccgttaa gatcctgact caccagcacg caggcatccg gttcaaggca
     4741 ggaagcgtcc gaataactct gctctttgac aaacgcccaa aatgcggcat ccggcttctg
     4801 gctaccgggc gcaatcatca ccacccgcgc taaatcgtcc gccgtcggag ggaccttatt
     4861 tctctgcaaa aacgtcatca gttcacgatt gcgctttctg ttctgcgtaa acgcctcgtc
     4921 atcccgcaac gatttcagcg cttcctggcc aggtttgccg ctgtgatcca gcatatacag
     4981 gctgatctga tccgcagtaa ttttaccgct atggtaacgc gccatatggc tgttgacgct
     5041 aatacgccag acatcaagta caggcgaggc cagcaacagc aatatcacca gcgtcaacaa
     5101 agagacgctc agtatcacct tgccttgcca ctcatcaggg tcgcgtccgc ggcgtaacag
     5161 accgatcaga taaccgaagg accataccag caagacagac gccgtcagcg cgccatacag
     5221 acgatccggc gtccagccgt attgctgaat gcgtacccat aacgcccagc ccgccagcag
     5281 catatatatc ggggcaacgc acagcgaggc gctaatcatg ccgcgtagta cgcgcggata
     5341 gggtaatacg cgcttttgcg gttcgttgac aatcgccacg aggagcagca gcatcagcgt
     5401 cagcgtggat agcagccccg tagcggaaac acgcgcagaa atcgcctcca gtccggtaaa
     5461 gggtaacgtc acaataaaca gcaatgccag cagcgacacc actggcagta aacccgtcgc
     5521 gatcagcgtc agcagctttt gcaccgccgc cacaaggcgc gactgcgtgc gggcgagaat
     5581 gaccgccagc gccgtaatca ggccgatggt cacataaata aaggcttcag tttcaaagaa
     5641 aagggtgctg aaaaagcgga tgcccaccag cctgaatagc gcgctccaga gcagaagcac
     5701 cagccagaac agtccgttgg cgaccaggac gataaacaat gtcagtacgt tatgccataa
     5761 ccgcagataa aactggggat aacgcgccga accggtttgc gaatgtaact gatattgcat
     5821 ccagggtaat accagcatcg ccatcaacac aagccggaga ccatacagcc agaggagctc
     5881 ggccaggcgc catttctcca ccgcctcaac ctgccatttc agccagccgc tcattgccag
     5941 cacgaccaca aagatcagcc ccagccagcc ccacagcgcg cgctgtttaa aagagaccac
     6001 ggtaagcaat agcattgacg acaacgctat cgtcgcaggc ataccataga acagccagtc
     6061 gctattttgt ggtaccagcc aggccatcag caggtagcac aagacgccct gcagcaaacc
     6121 agtgagcaac ataccccagc gagtagtacg tgaaagcgct acactttcca tgtcgttatc
     6181 cagaatgatg agaaagccgc attattgcac catctgttca ccgccaggcg tcgtcatgca
     6241 taattcagaa aaaaacgcag agaggtgaat cgatattgtt aatgttggtg ttacgtaact
     6301 ttcttacatg aatgcgatta cagtcacatt atgtcggtca aaaacacttc cttttaacgt
     6361 tttcagaaca ttttccacaa caaaagtagg tttcctgcca taataaccgc cgctgcgtga
     6421 caggagtcac agtgtttttc gtcaatcgtg attttgtcca gatacgtaaa tctatgagcc
     6481 ttgtcgcggt taaccaacct caaaaaacct tactattttc ggtaatatat attggctaag
     6541 gagcagtgat atgcgcgtta acaatttaac cccgcaagat ctcaaggctt atggtatcaa
     6601 cgacgtccag gatatcgttt acaatcccag ctacgacacc ctttatcagg aagaacttaa
     6661 tcctggtctg gaaggctatg agcgtggcgt gttaactaac ctgggcgctg ttgccgttga
     6721 taccggtatt tttaccggtc gttcgcctaa ggataagtat attgttcgcg acgacaccac
     6781 gcgtgatacg ctgtggtggt ccgataaggg taaaggtaaa aacgataata agccgctttc
     6841 ccaggaaacc tggcaacacc tgaaaggtct ggtgacgcat cagctttccg gtaaacgctt
     6901 attcattgtt gatgcgttct gcggcgcaaa tgccgatacg cgtctttccg tgcgctttat
     6961 tacggaagtc gcctggcagg cccacttcgt taaaaatatg ttcattcgcc caacggacga
     7021 agagctggta ggcttcaaac ctgactttat tgtcatgaac ggcgcgaagt gcaccaaccc
     7081 gcagtggaaa gagcaagggc tgaactcgga aaacttcgtg gcgttcaacc tgactgaacg
     7141 tattcagctt attggcggca cctggtacgg cggcgaaatg aaaaaaggga tgttctcggt
     7201 aatgaactac ctgctgccgc tcaaaggtat cgcctcaatg cactgttccg ccaacgtggg
     7261 tgaaaaaggc gatgtcgcgg tcttcttcgg cctttccggt accggaaaaa ccactctgtc
     7321 caccgacccg aaacgtcgtc tgattggcga tgatgagcac ggttgggatg acgacggcgt
     7381 gttcaacttt gaaggcggct gctacgccaa aaccatcaaa ctgtcgaaag aagcggagcc
     7441 agaaatttat catgcgattc gccgtgatgc gctactggaa aacgtcaccg tgcgcgaaga
     7501 cggcaccgta gatttcgacg atggttccaa aaccgaaaac acccgcgtct cttacccgat
     7561 ctatcatatc gataacatcg ttaagcccgt atccaaagca ggtcacgcca ccaaggttat
     7621 cttcctgacg gcggatgctt tcggcgtgtt gccgccggtt tcccgtttaa ccgctaacca
     7681 gacgcagtac cacttcctgt cgggtttcac cgctaaactg gccggcaccg aacgcggcgt
     7741 caccgaaccg acccccacct tctccgcctg cttcggcgcc gcgttcctga cgctgcaccc
     7801 gacgcagtat gctgaggtgc tggtgaaacg tatgcaggca gcaggcgcac aggcttatct
     7861 ggttaacacc ggctggaatg gcaccggcaa acgtatctcc atcaaagata cgcgcgcgat
     7921 tattgacgct attctgaacg gttctcttga taacgcggaa accttccgcc tgccgctgtt
     7981 cgatctggcg atcccgactg aactgccagg cgtggatacc cacattctcg acccacgtaa
     8041 cacctacgcg tcgccggaac aatggcagga aaaagccacc gcgctggcga aactgttcat
     8101 tgagaacttc gagaagtata cggatacccc ggcaggcgaa gcgctggtta gcgccggacc
     8161 gaagctgtaa ggaacaggcc ggatggcggc tttgaacagc gtcatccagt gttaagaaga
     8221 aagggagggt aatacctccc tttcttatgc ctcttttgtc gtcccctgga cgcgagccac
     8281 aggaaccggt agccaggcgc gaatcgacaa tccgccacgc tcgctggtgc caatctccag
     8341 catcccgtta tggttatcaa taatgcgctg cacaatcgcc agccccagcc ctgtgccgct
     8401 ggtgctacgg gcgctgtcgc cgcgcacaaa aggctggaac agatgtttac gctgctccgg
     8461 cttaatgccc ggcccgtcat cttctacctg gaaccaggcg cgatgcgact cggtgccgct
     8521 gctgacctta atccagcagt tgccatagcg ggcagcattg accaccatat tcgccaccgc
     8581 gcgcttaatc gagagcgggt gcattttcac ctggatgctg cctgcctgaa gcgcagtgtt
     8641 aatctcacgc tcatagccgc tttccgccgc aatcacctcg cccagcacgg aattgagatc
     8701 cgccatctcc attggcattt cctgaccggt acgcagatag tcaataaact gttcgataat
     8761 ggcgttacac tcttcgatgt ctttattgat cgactccgcg agataaccgt cttcctcgcc
     8821 catcatctcc gtcgccagac gaatacgggt cagcggcgtg cgtaagtcgt ggctgacgcc
     8881 cgccatcaat agcgtacggt catcggccaa ttgtttcacg ccggctgcca tatggttaaa
     8941 cgcccgggtc acagagcgca cctcagaggc gccatattca cgcagcggcg gcggaataat
     9001 tcccttccct acctgcaagg cggcatgttc aagatccact aacggtctgt tctgtatacg
     9061 aataaacagc cacgcgccgc ctatcgccag gagcatgatc gccagcgtgt aacggaaaag
     9121 cggagaaaaa tcgccctgat gaatctcggt cagcggcacg cgcacccaga tattgggcga
     9181 cagccaggtt ttgagccaca cgacgggcga gcttttgttg acctcaaccc gcacttccgt
     9241 cgggccgcct aattgctgcg ccatctggtg gcttaagaat tcgtagtgtt gcgcccaacg
     9301 cagcccggcc tcttcagcgg cttcgttggt gtagagagag atccccagct cgcgatagat
     9361 ttcccggcga aacgcaggcg gcacgactaa ctgcgtgccg tcctccagtt gcagcttatc
     9421 ggtcatcagc atacggactt cgtaagccag aaccttatta aactgctgga ggctcggcaa
     9481 aatcgcgaag ttcagcacca ccaggtaggt cgtcaccagg ctgacgaaca gcaaggtgac
     9541 gatgagcaac agcgtgcggg caaatgaact tcgcggcgag aagcgcattc gcctcatgct
     9601 ttagaaccgt ccggtacgaa gacgtagccc aggccccata cggtctgaat ataacgcgga
     9661 tgcgccggat cttcttccac catacggcgc aggcgggaga tctggacgtc gatggagcgt
     9721 tccatcgcgg aatactcgcg gccacgggcc agattcatca gcttgtcgcg agagagcggc
     9781 tcgcgcggat ggctgactaa cgctttcagt accgcaaact ccccgctggt cagcggcatc
     9841 ggttcatctt cacggaacat ctcgcgcgta ccgaggttca gtttgaactt accgaacgcg
     9901 ataacggcct cttcctgcga cggcgcgccg ggcagttcgt ttgcctgacg acgtagcacg
     9961 gcgcggatac gcgccaacag ctcgcgcggg ttaaacggtt taggaatgta gtcatcggcg
    10021 ccgatttcca gcccgacgat acggtcaacc tcttcaccct tcgccgtgac cataatgatc
    10081 ggcattggat tactttgact acgcaggcga cgacaaatcg acagaccatc ttcacctggc
    10141 agcattaaat ccagtaccat gagatggaaa gattcacggg tcagcagacg atccatctgc
    10201 tcggcgttag cgacgcttcg aacctggaag ccctgctcgg tcagataacg ttccagtagc
    10261 gcccgcagac gcatatcgtc atcaaccacc agaatcttat aattctcttg cattgtctgt
    10321 actcccaaag gttcgcaaca aatgtaagtg tgtattctta aaaaagctca cgtgagtcac
    10381 cagcaaattc tggtatgaat ttcaggctaa attgttacaa agcatattta acagcagctt
    10441 aaatatacaa ttaatcggca accccattat ttattctgtc gggacgatca cgttataccc
    10501 cgtgtgcgca atatcgacag caaaggtaaa tcaacgagat gaaaacgccc ctgatcaccc
    10561 gcgaagggta cgaaacactc aaacaagagc tcaattatct ctggcgtgaa gagcgcccgg
    10621 aggtcaccaa aaaagtgacc tgggctgcga gtctgggcga ccgcagcgag aatgccgact
    10681 atcagtataa taaaaagcgc ctgcgtgaga tcgacagacg cgtcagatat ctgaccaaat
    10741 gcatggaaaa tctcaaaatc gtggattatt ccccgcagca ggagggcaaa gtcttcttcg
    10801 gcgcctgggt ggaaatcgaa aatgatgacg gcgatacgct gaagttccgc attgtcggct
    10861 acgatgaaat tttcggacgt aaggattaca tctctatcga ctcgccgatg gcgcgggcgc
    10921 tactgaaaaa agaagtgggc gatctggcgg tggtcaacac ccctgtcggc gaagcaaact
    10981 ggtacgtcaa tgcgatcgaa tacgtcaaat aagacaagaa gaatcctaag cccccgctga
    11041 tggctggcat ttttgccagc caatccgtat aactatcccc tgatttttat cctgaagacg
    11101 aagctaaccc atgatgaatg attctttctg ccgcattatt gcgggtgaaa tccaggcaaa
    11161 tgccgggcag gttgaagctg ccgttcgcct gcttgacgaa gggaacaccg tgccgtttat
    11221 cgcacgttat cgtaaagaaa tcaccggcgg tctggatgac acgcagttgc gtaacctgga
    11281 aacgcgtctg ggctatctgc gtgagctgga agacaggcgt caggccatcc tcaagtccat
    11341 ttccgaacaa ggcaaactga ccgatgagct ggctggcgcc atcaacgcta cgttaagtaa
    11401 gaccgagctc gaagacctct acctgcccta taaacctaaa cgccgcaccc gtggacaaat
    11461 cgccattgaa gccggccttg agccgctggc cgatctgctc tggaacgaac cgtcccacga
    11521 tcctgacgtg aaagcggcaa agtacattga tggcgacaaa ggcgtggcgg acacgaaagc
    11581 cgcgctcgac ggcgcacgct acattctgat ggagcgcttt gccgaagacg ccgcattgct
    11641 ggcgaaagtg cgtgattacc tgtggaagaa tgcccatctg gtcgccacag tcgtgagcgg
    11701 caaagaggaa gaaggggcaa aattccgcga ctatttcgac catcatgagc ccattgctaa
    11761 cgtcccgtct caccgtgcgc tggccatgtt ccgtggtcgt aacgaaggca ttctgcaact
    11821 ttcgctcaat gccgacccac agtttgatga gccgccgaaa gagagctact gcgagcaaat
    11881 catcatggac catctcggcc tgcggctaaa taacgccccg gcggatagct ggcgcaaagg
    11941 cgtagtgagc tggacgtggc gtatcaaagt cttaatgcac ctcgaaaccg aactgatggg
    12001 caccgtgcgc gaacgtgcgg aagacgaagc gattaacgtg tttgcgcgta acctgcacga
    12061 cctgctgatg gcagcccccg caggcctgcg cgccacgatg ggccttgatc ctggcctgcg
    12121 taccggcgta aaagtcgctg tcgttgacgg caccggcaag ctggtggcga cggataccat
    12181 ttatccgcat accggtcagg cggccaaagc ggctaccgtg atcgccgcgc tgtgcgaaaa
    12241 ataccacgtc gaactggtcg cgattggcaa cggtacggct tcgcgtgaaa ccgaacgttt
    12301 ctatctcgac gtacagaaac agttcccgaa cgtgacggcg cagaaagtga tcgtcagcga
    12361 agcgggggcg tccgtgtatt ccgcttctga gctggcggcg caggagtttc cggatctcga
    12421 cgtctccctg cgcggcgcgg tctctatcgc gcgtcgtctg caggatccgc tggcggaact
    12481 ggtgaaaatc gatccgaaat cgatcggcgt cggccaatat caacacgatg tcagccagac
    12541 ccaattggcc cgtaaactgg atgcggtggt cgaagactgc gtaaacgccg tcggcgtcga
    12601 tttgaatacc gcctccgtac cgctgctgac ccgcgtcgca ggcttaacgc gcatgatggc
    12661 gcaaaacatc gtcgcctggc gcgatgagaa cggtcagttc cagaaccgcc agcaactgtt
    12721 gaaggtgagc cgtctggggc cgaaagcgtt tgagcagtgc gcgggcttcc tgcgtattaa
    12781 ccacggcgat aacccgctgg atgcctccac cgtccacccg gaagcctatc cggttgtcga
    12841 acgcattctg gcggcgacgc agcaagcgct aaaagatctg atgggcaaca gcaacgaatt
    12901 gcgtcacctc aaggccgctg attttaccga cgataaattc ggcgtgccga ccgtgagcga
    12961 tatcatcaaa gagctggaaa aaccgggccg cgacccgcgt cctgaattta aaaccgcgca
    13021 attcgccgat ggcgtcgaaa ccatgaacga cctgctgccg gggatgattc tggaaggggc
    13081 agtcactaac gtcactaact tcggcgcgtt tgtcgatatc ggcgttcatc aggatggcct
    13141 ggtccacatc tcttccctgt cgactaagtt cgtcgacgat ccacacaccg tggtaaaagc
    13201 tggcgacatc gtgaaggtga aagtgctgga agtggatctg caacgtaagc gtattgcgct
    13261 gacgatgcgt ctggacgaac agcccggcga aaccgccgct cgccgcggcg gcggtgccga
    13321 tcgcgctcag ggcaaccgcc cggcgtcaaa agcggcgaaa ccgcgcggtc gtgacgccca
    13381 gccagccggt aacagcgcca tgatggacgc gctggcagcg gcaatgggaa aaaaacgcta
    13441 atcgggtaat acgc
//
LOCUS       DAJVSD010000111        13361 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.111, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000111 DAJVSD010000000
VERSION     DAJVSD010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 13361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13361
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.111"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            9..3308
                     /locus_tag="OQP62_002588"
     CDS             9..3308
                     /locus_tag="OQP62_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016505867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722110.1"
                     /translation="MSQSEYASILKCTPWLAKFLTRRGLKQPDHRPLYEYHATSEEYD
                     ELKRLLRAIGVPDGYKSDKGYAACFTLFCSEWYRRDYEREYGWAWEPIYKTIGISASS
                     SKMGKIIPKGLDGYWGRPVRFYDTERRNFLGSLFSEGGLPFRLLKESNSRFQSMFSLI
                     LNQYDQAKSSNISTFALVHAAVEKSSLPVVFKEDTSVELISRMAEQLVSLVQIYDLSN
                     HTEPVKELERVHPKWRDSFPVPLDDDTGTSFLNGLLRTASTESKPRLQKNKTTLCQFL
                     WSENHPEALQALISLPEELSFSIDIEPSTTRFELAIYEDGNEIASLGPAYATLSNSQA
                     KIKVRKREIKFYRRNPTVSLFIVARAGGMFFGSNLLEGSEVAVGDVPLVFVSDKNEWL
                     LQGQASCSVRGSHVLIVLPKDGCLASEHEDCDSGFSALGCHALTIKGRQDIIIKGDET
                     YRIKIGRDQIIHTGFSFQGKRLNWTSYPDELFLGVPGITQHSENLSTRHYKRFFNGTF
                     IENCDVQEKMGAQFISVRNENDETLLRKKIGILPNDFSLEIKNGQQANEGSVIITTQH
                     PCLYSLKEKTLEVGRKRLPDSTEIMMKAEGIPPASISLQITPNLTANPIVIWLPFPAR
                     GCLAFDKDEKPLPKNLTINDLLGARAYLFGKNGEPTRYQLELRLRSRSGMQAWYEWHY
                     SAGECPVELTLYSLREHIDNLLSLEEGIDQTVDMRIKGGGSSFTWQIRRYKYSLDYDR
                     GRQILLANSISNRTGQIPSPVIMLLSEPERKVVLLTSRMSEGVPVGEFELSSIIQKNG
                     PWLVLPKPGEEASFRPCFIAGEPVIQSDATAIQSLQKATQLFNPRSDVNTIMLVLEQM
                     ASDPAHSGWQFLRNLYDQFGYLPLATFEVWRALVQHPQALAMSLFKFEMSIDYLSRIE
                     SEFPVFWEFLSITEVKRSATRFRAFLTHKGAPEEMQIRLLYRMYQQLGTTFPTYASEV
                     QLWLSQGKLPPVFPELTMKGIILEWYQELLREHGESRWPEFGGPGLLRWYMSQQNPVI
                     DISPDASYRYSVTLLPVFAAAVASGKTTFESVFENKPGAVFFLRQVRDFDSRWFNAIF
                     QYCLLRNVTEK"
     gene            3321..5858
                     /locus_tag="OQP62_002589"
     CDS             3321..5858
                     /locus_tag="OQP62_002589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015606369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HCS1722111.1"
                     /translation="MTTRYFSSLIEQSLSRSTEATLSIMGVTNPNLREHLTQQMAADC
                     GKEGSFLASPVFEQTFGWKESNSTMKDLATKQTLLSKEVVDSLDSEENGRYRFGSDWK
                     PFTHQLASWQSLLEKKHSVVVTSGTGSGKTECFMVPVLEDLYRELQVKNKKPLIGVRA
                     LFLYPLNALINSQRERLDAWTRSFGSGIRYCLYNGNTEELHALVKSEQANRPNEVLSR
                     EKMREEPAPILVTNGTMLEYMMVRQVDAPIIQKSKAEKSLRWIVLDEAHTYVGSQAAE
                     LALQLRRVMTAFGVTPDDVRFVATSATIAGSDAEKQLKKFLSELSGVPQERIDVLGGS
                     RVIPELEPCKQYSLSLDEIEHIPDSESEGISPERYSALTHSPEARCLREMLVSQPRPM
                     KLDTLTQRLNELTKHQYTQQDVLRWIDLCSGTLPNAKDPAFLKVRAHIFQRNTQGIWT
                     CVDKNCAAKKNTALEKNWSFGNVYVNQRQNCECGSPVFELAFCNECNEPHLLARDKKG
                     KLVQWDNKGGDEFSLQDEISDDFETSGEKIQKDFVFQSPQIIAAECNTEAGYIMQRLD
                     RQTRSIGVVNPDSIPLAINDIEQICSASNCGYKGGKGKQPFRRALLGGPFYVTNIVPT
                     VLEYCQDFTSDEGKDGVGPLSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGS
                     VVEILGWHQRKQPTSAPNDQADVMKLVARVTQYREEAREYREWGMPEEAKLSEAQAER
                     LEQAIQTATGGKAATILVCRTWTEMVNDLKEKADIQGPILQYNHYLKPEIFTENGGPL
                     KLAEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKAGSQCSYSLAG"
     gene            5896..9645
                     /locus_tag="OQP62_002590"
     CDS             5896..9645
                     /locus_tag="OQP62_002590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1998 domain-containing protein"
                     /protein_id="HCS1722112.1"
                     /translation="MTLDFYVRESNYIQLDDDLRNWIGSRFSSKFVRNPDSKEPDDNQ
                     VKRWPQIRHGNVTQRLVKLLILGAKFNTVNTVTIDIVNAWLKEAWLQLTGSLAVLKPD
                     GNRFYLPKEHLTFSLVQKARICPVTNKLLATTFKGLTPYLPMHIQFERLTSAQYDAFL
                     AQEVTLPAIWEHDRSQDDYVDGLTKVRDWVSQDPQVLPLRSQNLWTDINDRVVEGGFY
                     YRTAEHSAQQSSERLQSYERMFKNGQLNVLNCSTTMEMGVDIGGISAVVMNNVPPHPA
                     NYLQRAGRAGRSKESRAISYTLCKGNPHDQQVFANPLWPFETVIPAPMVAMNSERLVQ
                     RHVNSLLLSEYLCHVVGETEKERTSLNSQWFFGEELDQSVCNRFKAWLERPTLSIDNA
                     LERLVKGTALHGVTAEKLRDKTQEAIAVLQTRWLGIFRDLVKQESESQPNTPYRRRLE
                     LEKKRHCGEYLLRDLAARTFLPGYGFPTDVVTFDNFTMEDYIREKTHKSRDKNDREDN
                     VSRYKGLPSRNLSVAIREYAPGAEIILDGRVFRSAGVSLHWHNLNADTNEAQRLDSAW
                     RCHKCGTLGYEEGIGGSGDLFCTNSACGERITLDNRRQVLQPAGFVTDAHTPVTNNIE
                     TMKFIPVVPAWVFVKAERVPLPNPLMGFMASGADGHVFQQSMGEGGHGYALCLSCGRA
                     ESMLNATDTPKSMEAHYPPRPGKSDRDSQNQRIICPGSTALNKNVTLGALARTDVFEL
                     ILRRPQNGEYIPDNSDEGRIVAMTLAVALRRALASVLGVSATELGYAVRPVRLDNEQS
                     VLAVQLYDIISGGAGFASSAPLHIEAVLKGMVKQLGCRHCDTACSECLLDSQTRHDHD
                     QLDRKAAQAWLGEDFSHYIGLPEAEKFSLADAQYCPGSIEDAIRRAINDGARKLTLWM
                     NGPLNEWDLYARQFRTAIQNYRLKDEVEVTLVVPGHIEDPELLQEIAQFAAIGMQLCQ
                     SELNTDTPVVAQVAFNDRLMMLISRSPEATIPGPNWHLNSQMVIRSHAFEPITLSKAE
                     LLSDAAGSRGLVNDIEIHKQLNGPVSQFGQRFWGVLTGAQEDIQTLLKENQVTRIHYS
                     DRYLQNPVALALLGGLLKPLKSILAQDAQVTIDTLFKSKERPGNKPFHDWMSEADFQD
                     FADQWFAASMGRAVVVNTVGSPRDIPHHRKLMVTFSNGQALKIRFDQGMGYWRIVFAR
                     AYRDFDFNDDVAFQLGNMAKACVEGQVVNSEESWATDVLVQVIVP"
     gene            complement(9756..10590)
                     /locus_tag="OQP62_002591"
                     /pseudo
     CDS             complement(9756..10590)
                     /locus_tag="OQP62_002591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611505.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(10853..11698)
                     /locus_tag="OQP62_002592"
     CDS             complement(10853..11698)
                     /locus_tag="OQP62_002592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000490324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiK family protein"
                     /protein_id="HCS1722113.1"
                     /translation="MFRYLCNQKAALLTAILLMAAGVLTLCFPESWYPQETEWQLTAE
                     KEITGIHGGLSGLTWNPDSRTLFAVTDHPSSVVELDTEGNVLRVIPSDGDHDFEAIEY
                     LGGNRYALSRERERTLTTHCIDSSTTVLPPATYSLTLDVNRHSDNAGFEGLAWGRGEH
                     ALMVAQEKKPLRLYVTDRSPDALSVSDSLTHRASLPWFLKDISGLHYDRNNGLLYVLS
                     HESAVVVVSDLDGGRKVMSLRRGHCGLRRDIPQAEGIASDDRDTLWIVSEPNLFYRFT
                     RTASS"
     gene            complement(11749..11895)
                     /locus_tag="OQP62_002593"
     CDS             complement(11749..11895)
                     /locus_tag="OQP62_002593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001141719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722114.1"
                     /translation="MPTDDKGTIQAGDIPPLRALILLLLTSVFISGFLTGVLAMLWLI
                     CRGA"
     gene            complement(11885..12421)
                     /locus_tag="OQP62_002594"
     CDS             complement(11885..12421)
                     /locus_tag="OQP62_002594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000752635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HCS1722115.1"
                     /translation="MADAPAEVELFFFYCPPCYAFSQTMGVARAIRHVLPHGDRMIKY
                     HVSLLGPLGHELTQAWALAMMMKETDVVEKAFFTADMVEKRLHSPDDVRRVFMSATGI
                     SRGEYDRSIKSPAVNDMVALQERLFKEYGVRGTPSVYVRGRYHINNAAFGAFSVEDFR
                     SRYAAVVRKLLAGNPDAD"
     gene            complement(12784..13134)
                     /locus_tag="OQP62_002595"
     CDS             complement(12784..13134)
                     /locus_tag="OQP62_002595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_490504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1722116.1"
                     /translation="MASALTAFPEDGDISRIWYDRLCIEFNSDGGLSPAELRVIRLLL
                     QGYNCGQIAALCFRSVKTISAQKGLAFRRLGVRNDATLLPTLMLLGMVTLYTDLNRCH
                     SLEESGPECGSEAG"
     gene            complement(13119..13328)
                     /gene="pefI"
                     /locus_tag="OQP62_002596"
     CDS             complement(13119..13328)
                     /gene="pefI"
                     /locus_tag="OQP62_002596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_490505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator PefI"
                     /protein_id="HCS1722117.1"
                     /translation="MGESIITNIISIIRERQSTDNAPVKIRDIADAAGLSIYQVRSYL
                     EQLRAVGVLEKVNAGKGAPGLWRLL"
BASE COUNT         3382 a         3278 c         3470 g         3231 t
ORIGIN      
        1 agcttgcttt gagtcagtcc gaatacgcat ccattctaaa gtgtacccca tggctagcta
       61 aattcctcac ccgcagagga ttgaagcaac cagaccatcg tccgttatat gaataccacg
      121 caacgagtga agaatatgat gaattgaaac ggctgctgcg agctataggg gtacccgatg
      181 gttataaaag tgataaaggg tacgcagcct gtttcacatt gttctgctca gagtggtatc
      241 gaagagatta tgaaagagag tatggatggg catgggagcc aatttacaag acgataggta
      301 tctcagcatc ttcctcgaaa atggggaaaa ttatccctaa aggcctggat ggttactggg
      361 ggcgtccagt gcggttttat gacacagaaa ggcggaattt cttaggctcc ttattcagtg
      421 aaggcggtct acctttcagg ttgctaaagg aatctaatag ccgttttcag tcgatgtttt
      481 ctctcattct aaatcaatac gatcaggcta aatcttctaa catttccacg ttcgcgttag
      541 tccatgcagc ggtagaaaaa tcatccctgc cagtcgtttt caaagaggat acttcagttg
      601 agcttattag tcggatggct gaacagttag tatctcttgt tcaaatttat gatttaagta
      661 atcataccga acccgtaaaa gaacttgaac gtgttcatcc taagtggcgt gacagtttcc
      721 ctgtccctct cgatgatgat acgggtacca gtttccttaa tggactttta cgaacagctt
      781 ctactgaatc aaaaccccgc cttcaaaaga ataaaaccac tctctgtcag tttttatggt
      841 cagaaaatca tcctgaagcc ctccaggcac tcatttctct gcctgaagaa ctgagttttt
      901 caattgatat tgagccttca acaacgcgct tcgagcttgc tatctatgaa gatggtaacg
      961 aaatcgcaag tctgggacct gcatatgcaa cgctaagtaa ctcccaggca aaaataaaag
     1021 ttcgtaagcg cgagattaaa ttttaccgaa gaaatcccac ggtcagtttg tttattgtgg
     1081 cgagagctgg gggtatgttt ttcggctcca atcttttaga aggcagtgaa gttgcggttg
     1141 gcgatgttcc attggttttt gtttctgata aaaatgaatg gctgttacag ggacaagcct
     1201 cttgcagcgt acgtggcagc catgtactta ttgtgctgcc aaaggatggc tgtctggctt
     1261 cagaacatga ggattgtgac tctggctttt cggctttggg atgccatgct ctgaccatca
     1321 aaggtcgcca ggatatcatc attaaaggcg atgaaacgta ccggataaag ataggaagag
     1381 atcagattat ccatactgga ttctctttcc aggggaagcg attaaattgg acaagttatc
     1441 cggatgaact cttcctcggt gttcctggaa ttactcaaca ttctgagaat ctatcaacgc
     1501 gccattacaa gcgttttttc aacggaacat ttatagaaaa ttgtgatgta caagaaaaaa
     1561 tgggagcaca gtttatttcg gtgcgtaacg aaaatgatga aacgttactg cgtaagaaaa
     1621 ttggcattct ccccaatgat tttagtctgg aaataaaaaa tggacaacag gcgaacgaag
     1681 gttctgtcat tattactact cagcaccctt gtttgtatag cttgaaggaa aaaacacttg
     1741 aagttggacg gaagcggttg cccgatagta cagaaataat gatgaaggcg gagggcattc
     1801 ctcctgcatc aatttcatta caaataacgc caaacctcac tgcaaacccg attgttattt
     1861 ggttaccatt tcctgcacga ggctgtcttg cgttcgataa agatgagaaa cctctcccga
     1921 aaaatttaac gattaacgat cttctgggtg ccagagcata tcttttcgga aaaaatggtg
     1981 agcctacgcg ataccagctt gaactacgtt tacgttcgcg tagtggaatg caggcctggt
     2041 atgagtggca ctacagtgcg ggagaatgtc cggtagagct tactttatat agcttaaggg
     2101 aacatattga taatttactc tccctggagg aaggaattga tcaaacagtt gatatgcgca
     2161 taaaaggagg tggtagttct tttacctggc agatccgacg ttataaatat agtctggact
     2221 atgatcgtgg caggcagatt cttctcgcaa actcaataag taatcgtaca ggccagatcc
     2281 cttcgcccgt cattatgtta ctcagcgaac cggagagaaa agttgtactg ctgacgtcaa
     2341 gaatgagcga aggtgtacca gttggtgaat ttgaactaag ttcgataata caaaagaatg
     2401 gcccatggct ggtgctgccg aaaccaggtg aagaagcctc atttcgacct tgctttattg
     2461 caggtgagcc ggtaattcaa agcgacgcga cagcaataca gtctttacaa aaagcaacgc
     2521 agctttttaa tcctcgttca gatgtcaaca ccattatgtt agttctggaa caaatggcga
     2581 gcgacccggc acactcgggc tggcagttct tacgcaattt atacgatcag ttcgggtatt
     2641 tacctttggc tacctttgaa gtatggcggg cacttgttca gcatccacaa gcgttggcga
     2701 tgtcgctgtt caaatttgaa atgtccattg attatctcag ccgtattgaa agtgagtttc
     2761 ccgttttctg ggagttttta tccattacag aagttaaacg ttccgccaca cgttttcgtg
     2821 cttttttgac tcataaaggt gcaccggagg aaatgcagat aaggttgctg tacagaatgt
     2881 atcaacagct gggcacaaca ttcccgactt atgccagtga ggtgcaatta tggttgagtc
     2941 aagggaaatt accaccggtt tttcctgagt tgacgatgaa aggtattatc cttgagtggt
     3001 atcaggaact tctacgcgaa catggtgaat ctcgctggcc agaatttggt ggcccaggcc
     3061 ttttacgttg gtatatgtcg caacaaaatc ctgttatcga tatttcccct gatgccagct
     3121 accgctattc cgtcaccttg ctccccgtat ttgctgctgc tgttgccagc ggtaaaacaa
     3181 catttgaaag tgtttttgag aataagcccg gcgccgtatt tttcttgaga caggttagag
     3241 attttgactc acgatggttt aacgccattt tccaatactg tctattgcgt aatgttactg
     3301 aaaaataaaa aggaataaga atgactacac gctatttttc ttcgctgatt gaacaatcac
     3361 tgtcgcgttc tacggaggcg acgctgagta ttatgggggt gaccaacccg aatcttcgcg
     3421 agcatctcac gcaacaaatg gcggccgatt gcgggaaaga aggatcgttt cttgcctccc
     3481 ccgtatttga acagacattt ggctggaaag agtccaacag cacaatgaaa gaccttgcaa
     3541 caaaacaaac gttgctaagc aaggaggtgg tggactcgct ggatagtgag gaaaatggtc
     3601 gttatcgttt tggctctgac tggaaacctt tcacgcatca gttagccagc tggcaatcat
     3661 tacttgagaa aaaacactca gtcgtggtga ccagcgggac aggctctggc aaaacggaat
     3721 gctttatggt cccggtactg gaagacctct atcgtgagct tcaggtcaag aacaaaaaac
     3781 cgttgatagg tgtgagagca ctttttcttt acccactgaa tgccctgatt aattcccagc
     3841 gcgagcgttt agatgcgtgg acccgtagtt ttggttccgg aattcggtac tgtctgtata
     3901 acggtaacac agaagaattg cacgctttgg tcaaaagtga gcaggcaaac aggcctaatg
     3961 aggttttgtc acgagagaag atgcgtgaag aacccgcccc cattttagtg accaacggta
     4021 ccatgctgga atacatgatg gttcgtcagg ttgatgcacc gattattcag aaatcaaaag
     4081 ctgaaaaatc attacgctgg atagttctgg atgaagccca tacctacgtt ggttctcagg
     4141 ccgctgagtt ggctctacag ctccgtcgcg tcatgacggc atttggcgtc acgcctgatg
     4201 atgttcgctt tgtggcgacg tcggccacca ttgccggaag tgatgctgaa aagcagctga
     4261 aaaaattctt gtctgagctg tcaggagtgc cacaggaacg tattgatgtt ctgggcggaa
     4321 gccgcgttat tcctgagctc gaaccctgca aacaatattc tctgtcactg gatgagattg
     4381 agcatatccc tgattcggag agtgaaggga tcagtccgga gcgttatagt gcgttgaccc
     4441 actctccgga agcgcgctgt ttacgcgaaa tgctggttag ccaaccccga ccaatgaaac
     4501 ttgatacgct gacccagcgt ttgaacgagc tgaccaaaca tcagtacacg cagcaggatg
     4561 ttttacgctg gatcgatctt tgctctggca cactccctaa tgcaaaggat cctgcatttc
     4621 tgaaagtcag agcacatatt ttccagcgaa acacccaggg catctggaca tgtgtggata
     4681 agaactgtgc agctaaaaaa aataccgcgc tggaaaaaaa ctggtctttt ggcaatgtgt
     4741 atgtaaatca gcggcaaaac tgcgagtgcg gcagtcccgt ttttgaactg gcattctgca
     4801 atgagtgtaa tgaaccgcat cttcttgcac gggataaaaa aggcaaactc gtacagtggg
     4861 ataataaagg tggagatgaa ttctccctac aggatgaaat ttctgacgat tttgaaacat
     4921 ccggagaaaa gattcagaag gattttgtat tccagtcgcc acaaattatt gctgcggaat
     4981 gtaatacgga agctggctat attatgcagc ggctcgatcg tcagacccgc agtatcggcg
     5041 tggtgaaccc ggacagtatt ccgctggcaa ttaatgatat cgaacaaatc tgtagtgcca
     5101 gcaattgtgg ctataaaggc ggaaagggta aacagccctt ccgaagggcg ttactgggcg
     5161 ggccttttta tgtcaccaat attgtgccta cggtgctgga gtattgtcag gacttcacta
     5221 gtgatgaagg taaagatggt gtcggcccgc tctctttgcc tggtcgaggt cgtcgcctga
     5281 ttacctttac cgacagtcgt caggggacgg cgcgaatggc agtacgtatg cagcaggaag
     5341 cagagcgcag ccgattacgt ggtagcgtag tagaaattct tggctggcac caacgaaaac
     5401 agccaacgag tgctccgaat gaccaggctg acgtgatgaa actggttgca agggtgacac
     5461 aataccgtga agaagcccgg gagtatcgcg agtggggaat gcccgaggaa gcaaaacttt
     5521 ctgaagctca ggccgaacgc cttgaacagg caatccagac ggcgacgggg ggaaaggctg
     5581 caaccatttt agtttgccga acctggacgg aaatggtcaa tgatctgaaa gagaaagccg
     5641 atatacaggg accaatttta caatataacc attatctgaa gcctgaaatt ttcaccgaaa
     5701 atggcggccc tttgaaactc gccgaaatgc tgcttttccg tgagtttatg cgacgcccga
     5761 aacgaaccaa cagcctggaa acccaggggc tggttcaggt tggctatcag gggctggaga
     5821 aggcaggctc acagtgttcc tactcactgg caggctaaag gcttaaccct tgatgactgg
     5881 cgcgattttc tgaaggtgac gctggatttc tatgtcagag aaagcaacta catccaactg
     5941 gatgacgatc taagaaactg gatcggtagc cgtttctctt ccaaatttgt ccgcaaccca
     6001 gattcgaaag agccagatga caaccaggtt aaacgctggc cgcaaattcg ccacggtaat
     6061 gtgactcagc gcctggtcaa gctgttgatt ttaggggcca aatttaacac cgtaaatacg
     6121 gtaactattg atattgttaa cgcctggctg aaagaagcct ggctccagct aacaggatct
     6181 ctggcggtat tgaagcctga tggaaaccgt ttttatttac cgaaagagca tctgacattc
     6241 tctctggtgc aaaaagcacg catttgtcca gtgaccaata aattactggc gacaaccttc
     6301 aaaggtctga ccccctattt gcccatgcat atccagttcg agcgactgac gagtgcacag
     6361 tacgacgcgt ttttggctca ggaagtcacg ctgccagcga tctgggaaca cgatcgctct
     6421 caggatgatt atgtcgacgg gttaacaaaa gtgcgtgact gggtaagcca ggatccgcaa
     6481 gtgctaccat tacgctcgca aaacctctgg acggacatta acgatcgcgt ggtagaaggt
     6541 ggattttact accgcaccgc agaacactcg gcacagcaat cgtcggagcg cctgcaaagc
     6601 tacgaaagaa tgtttaaaaa cgggcagctt aacgtcctta actgctcaac cacgatggaa
     6661 atgggtgtgg atattggcgg tatttctgca gtggtgatga acaacgttcc tccgcatccg
     6721 gccaactatt tacagcgagc cgggcgtgcc gggcgtagta aagagtcacg cgctatttcg
     6781 tacaccttgt gcaaagggaa cccgcacgat cagcaggttt ttgctaatcc cctctggccg
     6841 tttgagacgg tgatcccggc tccaatggtg gcaatgaact cagagcgtct ggtgcagcgt
     6901 cacgtcaatt ccctgttact gtcagaatac ttatgccatg tggtcggtga aaccgaaaaa
     6961 gagcgtacca gccttaatag ccagtggttc tttggcgaag agctcgacca gtcggtatgc
     7021 aatcgtttta aagcctggct cgaacgtccg acgctgagca ttgataacgc gctggagcgt
     7081 ctggttaaag ggacggcatt gcacggcgtt acggcagaaa aactgcggga taaaacgcag
     7141 gaggctattg ccgtcttaca gacacgctgg ctggggatct tccgcgatct cgtgaaacag
     7201 gaaagtgaat cgcagcccaa tacgccgtac cgcaggcgac tggaactgga gaaaaaacgg
     7261 cattgtggtg aatacctgtt acgcgatctg gcggcccgaa ctttcctacc cggatatggc
     7321 ttcccaacgg atgttgtcac ttttgataac ttcaccatgg aagattatat ccgcgagaaa
     7381 acgcacaaaa gccgtgataa gaatgaccgg gaggataacg tttcgcgtta taaagggctg
     7441 ccttcgcgca acctttccgt tgcgatccgt gagtatgcgc cgggcgcgga gattatcctt
     7501 gatggtcggg tattccgctc ggccggtgtt tcgctgcact ggcataacct taacgccgat
     7561 actaacgaag cccagcgtct ggacagcgcc tggcgttgcc ataaatgcgg tactttaggc
     7621 tatgaggaag gtattggtgg ctcgggggat ttattctgta ccaatagcgc gtgcggggag
     7681 cggatcacgc tggataaccg acgtcaggta ttacagcccg ccggttttgt caccgatgcc
     7741 catactcccg ttacgaacaa cattgaaaca atgaaattca tcccggtggt gcctgcctgg
     7801 gtgtttgtga aagcagaacg cgtgccactg ccaaacccgc tgatgggttt tatggcgtca
     7861 ggcgcggatg gtcatgtttt ccagcagagc atgggcgaag gtggacacgg ttatgcgctg
     7921 tgcctgagct gcggccgggc ggagtcaatg ctcaatgcca ccgatacgcc gaaatcgatg
     7981 gaagcgcatt atcctccgcg ccccggtaaa tctgatcgcg acagccagaa tcagcggatt
     8041 atctgccctg gctccacggc gctgaataag aatgtcacgc tgggtgcgct ggcgcgcacc
     8101 gatgtgtttg aactcatttt gcgccgtccg caaaacgggg agtatatccc cgataattct
     8161 gatgaaggcc gtattgtggc catgacgctg gcggttgcac tacgtcgagc gctggccagc
     8221 gtgctggggg tatcggcgac agaactgggc tatgcggtgc gtccggtcag actggataat
     8281 gagcaatcgg tcctggcggt gcagctttac gacattatca gcggcggtgc ggggtttgct
     8341 tccagtgcgc cattgcatat tgaagcggtc ctcaaaggga tggtgaaaca gctgggatgc
     8401 cgccactgtg ataccgcctg tagcgaatgt ctgctcgatt cgcagacccg ccacgatcac
     8461 gatcagctgg atcgtaaagc cgcgcaggcc tggctggggg aggatttcag tcactatatc
     8521 ggtttgccgg aggcggaaaa attctccctg gccgacgcgc agtattgccc aggcagcatt
     8581 gaggatgcta tccgtcgtgc cattaacgac ggggcgcgca aactcacgtt gtggatgaat
     8641 gggccgctta acgagtggga tttgtatgcc cgccagttcc gaacggcgat ccagaactat
     8701 cggctgaaag atgaggttga ggttacgctg gttgtgcccg gtcatattga agatccggag
     8761 cttttacagg agattgcgca gtttgccgcc attggtatgc agctttgcca gtctgagctg
     8821 aatacggata cgccggttgt cgcacaggta gcattcaacg atcgcctgat gatgttgatt
     8881 tctcgcagcc cagaggccac catccccggc ccgaactggc atctgaatag ccagatggtt
     8941 attcgcagcc atgcgtttga gccgataacg cttagtaaag cagagctatt atccgatgcc
     9001 gcaggtagca gaggcctggt caacgatatt gagatccata agcagcttaa tggcccggtt
     9061 tctcaatttg gtcagcgttt ctggggcgtg ttaaccgggg cgcaggaaga tattcagacg
     9121 ctgctgaagg aaaaccaggt gacgcgcatt cactatagcg atcgttatct gcaaaacccg
     9181 gtggcgctgg cgttattagg cgggctgtta aaaccgctga aatcgatcct ggcgcaggat
     9241 gcgcaagtga cgattgatac gctgtttaag agtaaagagc ggccaggcaa caagccgttc
     9301 catgactgga tgagtgaagc ggattttcag gattttgccg accagtggtt tgcggcatct
     9361 atgggcagag ccgtcgtggt taacaccgtt ggctcgccgc gtgatattcc acaccatcgt
     9421 aaactgatgg tgaccttcag taatggtcag gcgctgaaga tccgttttga ccaagggatg
     9481 ggatactggc gcatcgtctt tgcgcgagcg tatcgcgatt ttgattttaa cgatgatgtg
     9541 gctttccagc tcgggaatat ggcaaaagcc tgcgttgaag gtcaggtggt caacagcgag
     9601 gaaagttggg caaccgatgt gctggtgcag gtgatagtcc cttaatgcga aaccgctccc
     9661 gattaaacat cgggagcggc taacatcagg cggtggtgcg cttgccggta atcatgtcga
     9721 taatgaccct ggcacaaatt cagtacagtg ctaaatcaga gagcttcgtc tttccggaga
     9781 cttcggataa attcagccgg agtcatgtca tttaatgatg aatgcgttct ctcatgattg
     9841 tattccctgc gccagttgtc gggtttttcc tgcgcatctt ccagtgacag gaaccagtga
     9901 atgttcaggc attcatcccg cagactgccg ttaaatggtt caataaacgg gttatctgtc
     9961 ggctttccgg ggcgcgagaa gtccattgtg acgccgtgtt catacgccca tttatccaga
    10021 ctttttgaga taaactcgct gccgttatcc gtctggattc gtaccggcag ccgcttatcc
    10081 ggcacccgca gtgcctccat tattctgacc acatcctcgc cttttaacga ttttccggca
    10141 tggatcgcca ggcattcccg actaaaatta tccactacag ccagcgcccg aaaacgccgc
    10201 ccgttaaaca gattatctga cacaaaatcc atactccggc actgatcgac atgcgtcaga
    10261 accgggcgct gatacagtaa gcctcccgca aaaatgtaac cgcctggcgc ttctgagccg
    10321 gcctcagaac ttttgcttca gtacctcctg cagcatctcc ttgtcgagac tcagctcagc
    10381 gaccagcttc ttcagccgct gattctcatc ctccagttgc cgcagacgcc gctgttccgt
    10441 cacgcccggc ccggcaaatt ttttcttcca gttgtaaaat gtggcctcag aaattcccat
    10501 ctttctgcag acttccccga cgcgggtgcc ggtttcagcc tgtttcaggg caaatgcagt
    10561 ctgttcttcg gtataacggg tctttttcat ggcaatgcgc ctctctgtga gatggaagaa
    10621 agaccggaaa cttcagttta gactggcact gtttacaggg ggaaggtcag gggaaggtca
    10681 tcaaccagct tcccaccatc accacaaacc agaataattc cctgaaaaaa gatgcgctga
    10741 atgttatgtt tttcatcatc tttccactgt cagaatccac cgctgacacc ggcaccaaca
    10801 ccggtcggct tcacgcggcg aattttactt caccttccgc gccgcctcat cctcaggacg
    10861 aagccgtgcg ggtgaagcgg taaaacagat tcggttcact gactatccac agcgtgtccc
    10921 ggtcatctga ggctatcccc tccgcctgcg ggatatccct tcgcaggcca cagtgtcccc
    10981 ggcgcagcga catcaccttc ctcccgccgt ccagatccga caccacgacc acggcagatt
    11041 catgggaaag tacatacagg agcccgttgt tccggtcata atgcagaccg gagatatcct
    11101 tcaggaacca tggcagggac gcccggtgtg tcagcgagtc actcaccgac agcgcatcag
    11161 ggctccggtc cgtcacgtaa agccgcagcg gttttttctc ctgcgccacc atcagggcat
    11221 gctctccccg tccccaggca aggccttcaa aaccggcatt gtcgctgtgc ctgttcacat
    11281 ccagcgtcag gctgtatgtt gccggcggga ggacggtcgt gctgctgtca atgcagtggg
    11341 tggtgagcgt ccgctcccgc tcccgggaca gggcatagcg gttcccgccg aggtattcga
    11401 tggcctcaaa atcgtggtcg ccgtctgacg gtatcacccg cagcacgttc ccttccgtgt
    11461 ccagctccac caccgaggag gggtggtcgg tcacggcaaa cagcgttctg ctgtccgggt
    11521 tccatgtcag gccggagagg ccgccgtgta tcccggtaat ttctttttct gccgtgagct
    11581 gccattctgt ttcctgcggg taccaggact ccgggaaaca cagggtgagc acgccggccg
    11641 ccatcaggag aatggcggtc agcagtgcag ctttctggtt acataaatat ctgaacatcg
    11701 tggtggtgaa agttatgttt tctgttacag gggagaccgg acttcacatc atgccccacg
    11761 gcagataagc cagagcatgg ccaagacgcc ggtcagaaag ccggagataa agacgctggt
    11821 cagcagcagg agaatcagcg cgcggagcgg ggggatatct ccggcctgta tggtgccttt
    11881 atcatcagtc ggcatcaggg ttaccggcca gcagtttccg gaccaccgcg gcataacggc
    11941 tcctgaaatc ttcgacggag aatgcaccga aggcggcatt gttgatatgg taacggccac
    12001 ggacatacac ggaaggcgtc cccctcacgc catattcctt aaacaaccgt tcctgtaatg
    12061 ccaccatgtc attcacggcg ggacttttta tacttctgtc atactccccg cgactgatac
    12121 cggtagcaga cataaacacc cgacggacat cgtccgggga atgcaggcgt ttctccacca
    12181 tgtcggccgt gaagaaggcc ttctcgacca cgtcagtttc cttcatcatc atggccagcg
    12241 cccaggcctg tgtcagctca tggccgaggg ggcccagcag gctgacatgg tacttgatca
    12301 tccggtcacc gtgcggcagt acgtgccgga tggcccgggc cacgcccatc gtctgtgaga
    12361 acgcatagca gggcggacag taaaagaaaa atagttccac ctcggcgggg gcatcagcca
    12421 ccaagggagt tatgaactcc cactcctgcg caatcacagg acgggcgcgg ccaggtaaaa
    12481 aaaaaagaaa ataatattcc cctcaggaaa aacagctccc gggcataatt catcgtcacg
    12541 gaaacactcc atggataaca gatatacaga atgaaaggcc gcttaacggt accgcctgac
    12601 agcagcagta aatcttaatt catccggcac ggtcattaag ccggcagccg gaatattccg
    12661 gtcatgagtt ttccagaata aaaagcactg acacacaaaa gaccattgcc attaatatga
    12721 cgacggccag acaggcgtaa taaacgaatt tcatgaacat gataaaataa ctttcagtga
    12781 tacttatcca gcttccgacc cacattccgg gccgctctcc tccagtgaat gacaccggtt
    12841 caggtctgta tacagtgtca ccatccccag aagcatcagg gttggcaaca gggtggcatc
    12901 attcctgacg ccgaggcgcc tgaaagccag gcctttctgg gctgaaatgg ttttgacgct
    12961 gcgaaaacag agggcagcaa tctgcccgca gttatagccc tgcagcagca gtcggataac
    13021 ccgcagttca gccggactca gtccgccgtc gctgttaaat tcgatacaaa gccgatcgta
    13081 ccatatccgg ctgatgtccc cgtcttccgg gaaagcggtc aaagcagacg ccataatccg
    13141 ggcgctccct ttccggcatt tactttctca agcaccccga cagcacggag ttgctcaaga
    13201 tatgagcgga cctggtagat actgagtccg gcagcatcag caatatcgcg gattttaaca
    13261 ggcgcgttgt ccgtactctg acgctcccgg atgatggaga tgatgtttgt aatgatggat
    13321 tcacccataa acggccccac tcttcaaggt taaaataaat g
//
LOCUS       DAJVSD010000112        13225 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.112, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000112 DAJVSD010000000
VERSION     DAJVSD010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 13225)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13225)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13225
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.112"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(32..574)
                     /locus_tag="OQP62_002597"
     CDS             complement(32..574)
                     /locus_tag="OQP62_002597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1062 domain-containing protein"
                     /protein_id="HCS1722118.1"
                     /translation="MKVTWTVTPVGYQHIAKRCPSCNVKRDFTPSGAFRINSQKKILD
                     VWSIYKCTHCDYTWNIALYSRLPVSKINQELHHRLMTNDESTIRHFAYDTAVLKQNNA
                     KLSGQLDFRIQERCLTSITRQYQICVRIRLTRSFQVSLLSIMKIQLMLSSADIRRRID
                     SGQITGVTAKMLKSRKLRQT"
     gene            1840..2760
                     /locus_tag="OQP62_002598"
     CDS             1840..2760
                     /locus_tag="OQP62_002598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase domain-containing protein"
                     /protein_id="HCS1722119.1"
                     /translation="MAGKTARSKVEKFRRDFVTLARDAGRAYATAADSMRIAKYFLNY
                     LRDNGIKLRHTDSIKTRHVTGYLQFRKSQGISVRTIQNERAAIRGVLNKAGRYKLADP
                     NNPLLSNKALGLEKSSRSGTKLPLSPEEFQKAFKEVEKSNRGVAATMLLSYTLGLRTK
                     EAVESCKSVMTWKRALESGEHSVRVIFGTKGGRGRNTLIVDKDALRHAINYAEKVMKE
                     NNGKLIDRPDIRKAIDTYRYHVRRAGLTGEKAPHSMRYHFSQEAREYYEKNGFSGKEI
                     YAQVSMDLGHGDGRGRYVKQVYFRDGTEDE"
     gene            3484..3786
                     /locus_tag="OQP62_002599"
     CDS             3484..3786
                     /locus_tag="OQP62_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001020124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722120.1"
                     /translation="MNIFLTSLVSILRKALPRIRHGKSEWIANHTGYLRFQAEVWLDD
                     NDHFHAVVNKRSGWMNPRYEQVVDCGKFDSFHCAMNTAYSQALELAHLRYAWELTD"
     gene            3882..4262
                     /locus_tag="OQP62_002600"
     CDS             3882..4262
                     /locus_tag="OQP62_002600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001103837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722121.1"
                     /translation="MNVYQLKNRTDVLIWLSLIEGDLLSIQASLNAGLYPLYDDRQEE
                     PEFECAVFNCGMAFGEFMERLESEDIDVLTTAGHELTGSIEHMGRMLCEPVWTQAVLL
                     GRNEARADRAICAAEADGWLYDPA"
     gene            4633..4842
                     /locus_tag="OQP62_002601"
     CDS             4633..4842
                     /locus_tag="OQP62_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000018146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722122.1"
                     /translation="MSHIHLPSVCEKTGNTLTPEQENRVRHLVHEECYSRDRAALIKL
                     IGLMLLLKLAGTLMLAMLLLVLRLF"
     gene            4860..5312
                     /locus_tag="OQP62_002602"
     CDS             4860..5312
                     /locus_tag="OQP62_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000979718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722123.1"
                     /translation="MMLTTRLFVFLLHHLWRVMRWTGLTVYHGISVLYRRRQARLQAS
                     DWRPRTVYTGRWQLADDGQFCGRAVVLRLRDALKPGVELLYFGEEAAEPYYSERQFVD
                     DRESVMVAEQMLLRFLGSRHRRQNRRNAPVSVLVTDVVTTAPVNDEAA"
     gene            5309..5605
                     /locus_tag="OQP62_002603"
     CDS             5309..5605
                     /locus_tag="OQP62_002603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000969000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722124.1"
                     /translation="MMDIMALLSSTPPAVAIEEPVWEQLVKYPQAPDCENERLQRLIY
                     HGFQALSQAPSGQGIVEFGYFCLPPDGDLHAPLWQNVCIKREYSDGQVTLTFDR"
     gene            5683..6141
                     /locus_tag="OQP62_002604"
     CDS             5683..6141
                     /locus_tag="OQP62_002604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000115421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722125.1"
                     /translation="MSVMTTNETPASTVAEPEVFRRTRNRFNQWLQAEFDRHYHTMRD
                     GGYRSFLKKNHPTELLRYDEACEALRREEFARFAELQTLGLYLHLQVQQKEAQFRRRR
                     NRLLLGMTLTGVVTSVLLYGHFHPEQFLLIGQELATLPGRILGFVGRLVP"
     gene            6230..8179
                     /locus_tag="OQP62_002605"
     CDS             6230..8179
                     /locus_tag="OQP62_002605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015606332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HCS1722126.1"
                     /translation="MNTSLHPDDISRFISGRLISSLAAGQVPWRGTIPGLPEHALTGV
                     PFTGINVLLLWQAMQQRSLRSGRWLTGDDLRQLGGQVRSGEKPVTLVRYRPSLSLFKV
                     INPEQCDGLPDTLQPGWPLPPRPQPSLNVIRDLLQNSGVPVIHRDNVLPVYRALHDRI
                     ELPPVASYVGEETYWQDILNLLVQATGHPQRLHRFGLTVDTRTDEVHEALVAELGAAF
                     LSAALGLPGAMLSRLDVAPWVTYLQGDPWRLFRAAEAARKAMMWLKERRPSMTTVEMW
                     QKMASLILETHYGFSLDDTTLGCRSVVERHIECGITPLMAINALARIYQWERYDQPQR
                     SLFINEAGPDSEILTLSEIRPELLTCYRVPVPSGIPDRKAEAVQVESLPLLLAPAVSE
                     GKSAANDDGPDDPDGNDNVVALPWAARRGKENPHIHRFVSIFNGIAPHESRWQVFSDF
                     VHMAACSLYNAVHRDPDFEADYMRRVSHYSAEDANNMARLLSEVVMGLEFSPTDFLGR
                     IYMISGLGNFHNAQYFTPYSVSYAMARMTLSDRIPELSSGERDFITVSDPASGAGSMV
                     VALAEAMLEAGFNPQKQMVAYCVDIDPVASMMCYIQLSLMGIPAIVATGNSLTVEIKR
                     EMATPMFVLGRWHHRWQADRTRKAA"
     gene            8251..9159
                     /locus_tag="OQP62_002606"
     CDS             8251..9159
                     /locus_tag="OQP62_002606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000881184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722127.1"
                     /translation="MLASFYIQRQLSKALGLSVNAEEVFYQVDDRESDYVNTDMVLNR
                     DRLLSVMQFMLDDVALNPELRERCRQAERILTLWIRGLDALATVSEDMSILPRTITEC
                     SGRVDRLLPGDPQALLALPDDAFLRLTAQCHLMSGEQFPREQLAATMPYWTRFMAWIA
                     RELYQVEDRCLVQLGRLYRRLHVEPRKIRCFNLAFGRIELHMSGRDIDECQYLYAYDD
                     ASLEDYLEEIMAGNLTPVRFEVRVIYRNDSELNVFRRDADVIDVEHPHVSDWQNVVSE
                     ALDWLRQERTSLVEIPLTRPALKLAA"
     gene            9233..10132
                     /locus_tag="OQP62_002607"
     CDS             9233..10132
                     /locus_tag="OQP62_002607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000022217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722128.1"
                     /translation="MSIIDEYISQHFSERLCLDVTEEDITWQLRGSRSDYVNTRIQFD
                     REKLMAVMDVMLSGLDSDETTLARCRQVLTLWIAGLDMLSKEAEQPDWLPRVHPHSSG
                     QCDLLLKGNPAALTEADEETYLRVTGQQDLPAHRRIPQVIFSKTVRYWHRFESWLAQQ
                     LQDITQHCYQKLKCFVANCTTEPRQLREFRGEYGSLRLFVGPQDIDEIDILEFNPEYI
                     VSWVDKVADGLFTPVCFVVNVYYKNGILLESFTWDSEVDNINRMTSSDYGEAMSQAIS
                     WVREQFEQPVIDQPVPQQPRLAA"
     gene            10207..10533
                     /locus_tag="OQP62_002608"
     CDS             10207..10533
                     /locus_tag="OQP62_002608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000911568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3085 domain-containing protein"
                     /protein_id="HCS1722129.1"
                     /translation="MLKFSAKDLKPVLLEARKNHCGVVLVKDHGVYIMSETGELTPRG
                     RKVAYAKGCHPEKDEAWWDTARAEVGGDDFGETINLTKSMINRILNERKPLYITASNE
                     EFKIEC"
     gene            complement(10633..10902)
                     /locus_tag="OQP62_002609"
     CDS             complement(10633..10902)
                     /locus_tag="OQP62_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001222413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722130.1"
                     /translation="MRINVLLLTSLLVAGPALAGEAHVCKSQTVANSAANAELTDNTV
                     FKCGESISGTIPSLAREGWKIVQQTDQADVTDPSKTYAQLIIQKD"
     gene            complement(11034..12308)
                     /locus_tag="OQP62_002610"
     CDS             complement(11034..12308)
                     /locus_tag="OQP62_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000457546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HCS1722131.1"
                     /translation="MFALADVNSFYASCEKVFRPDLRNTPVVVLSNNDGCVIARSKEA
                     KQLGIKMGVPWFQLKTTEFPVPVVAFSSNYELYASMSNRVMAHLEELAPRVEQYSIDE
                     MFLDVRNIDSCIDFEDFGRQLREHVHSGTGLTIGVGMGPTKTLAKSAQWASKEWRQFE
                     GVLALTSGNPKRTEKLLSLQPVDEIWGVGRRISKKLHTMGITTALQLARANPTFIRKN
                     FSVVLERTVRELNGESCISLEEAPPPKQQIVCSRSFGERVTTYEAMRQAVCQYAERAA
                     EKLRGERQFCRHVAVFVKTSPFAVNEPYYGNVASEKLTTPTQDTRDIIAAAVKALDRI
                     WVKGHRYAKAGCMLNDFTPTGISQLNLFDEVQPHERSEQLMKVLDSINHSGMGKVWFA
                     GRGIAPEWQMKRELLSPAYTTRWAELPVARLR"
     gene            complement(12308..12394)
                     /locus_tag="OQP62_002611"
                     /pseudo
     CDS             complement(12308..12394)
                     /locus_tag="OQP62_002611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_490545.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
     gene            12528..12905
                     /locus_tag="OQP62_002612"
     CDS             12528..12905
                     /locus_tag="OQP62_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001039750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722132.1"
                     /translation="MNKPLIALLLITSFSASADKIPSSIQNLIAVYDTRTHSLEDGGL
                     TIRYNKRLLLVDAAESMFQGICNDYYMNKWKPGTIKRITLLNVTSDQGFEINAGGDEC
                     RKAGTMKDEQARTYRTSFIKPLQ"
     gene            complement(12992..13210)
                     /locus_tag="OQP62_002613"
     CDS             complement(12992..13210)
                     /locus_tag="OQP62_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019704608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ogr/Delta-like zinc finger family protein"
                     /protein_id="HCS1722133.1"
                     /translation="MMNCPKCGHSAHTRSSFQVTDSTKERYCQCQNINCGSTFVTHET
                     VVRFIVTPALVNNAPPHPTVSGQGHMNF"
BASE COUNT         3184 a         3097 c         3490 g         3454 t
ORIGIN      
        1 agaatgtttc ctccgttatc tcaagacaat attaagtctg ccttaacttt ctcgatttaa
       61 gcatttttgc cgtaacgcca gttatctgcc cggagtctat tcgcctcctg atatctgccg
      121 aactcagcat aagttgtatt ttcattatgg acagcaggct tacctggaaa gagcgggtta
      181 acctgattcg gacacatatc tgatattgcc tcgttatact ggtcagacag cgctcctgaa
      241 tacggaaatc aagttgacct gatagttttg cattgttttg cttcagaaca gcagtgtcat
      301 aggcaaaatg cctgattgtg gattcatcgt ttgtcatcag ccggtgatga agttcctgat
      361 ttattttgct tacaggaagg cgggaataca gcgctatatt ccaggtgtaa tcgcagtgag
      421 tacatttata gatactccat acgtccagta ttttcttttg tgaattaatc ctgaatgcac
      481 ctgacggcgt gaagtctctt tttacattgc atgacggaca gcgttttgcg atgtgctgat
      541 accccacagg agtgacagtc catgttactt tcataattaa ccttttttac ccatacaaaa
      601 ccggatctgt atggaacgga ccatagagat ttgtgtgtga aaaataatca gaagatattt
      661 ttcagtgggt taaaaaaaga tttccaacac taccatcctg tcaacgactg aagcgatacg
      721 atcagactat caaagaagtc ttcttcagat atatgcgtta aattaatatt ggcgtcgtaa
      781 cccgcaggct tgcctttgat gaagcggaat atgatattta gccttttaag caggggggag
      841 ttgtattgat caacgtggca tcaatgatct actatacgaa cgttgtaatg gtgcattagc
      901 tgcacccacc aatgccccgg tgatctgaga ggggcgcctt cgggtgattg cataccaatg
      961 tcaccgtagc ctgagaggtg gcgccttcgg gtggtacagc cctttaatct ttggaaacgg
     1021 ctgtcgtgta cttctgcgac gaagatattt ttactacatg taagtaccgt ttttcggtat
     1081 cagatttttg acctgtcttc acgaacagtg gacgatcgct tcttctttct acggttttat
     1141 accgtatctt ttagtactca cttcttaagc ctccgtgctc agacaacctt tgcatgtacg
     1201 ggtatgccag ccatttggcg cgacgaacgt cgcaacattt ggggcatctt ccggacgatg
     1261 cattggacag tttgagtata cgcggcgtca cttgcgttcg agtaaaacga gaaccaagtg
     1321 acgccgcaag gcgtaaaaca tcttcagcac gtatttcctg atcttccgaa cagtttaaaa
     1381 agtgcattcg ttcgtgaaac cagtttgagg aatgcgctga aaaaacgttt tctacaacgc
     1441 ccgtcgcgtc cgttttccac ggacggccgc tcagggcccg tgtttaaccc gttgttaagg
     1501 tttcatctgt gaagcttaac gtaatgatta atggaggttt tatcgtcatg atattgaggc
     1561 gtcagtaatt actgacgggg agttaaattc gccgtactgc gtactggttg aactcctgca
     1621 aaaactcaac atagcgctac cctgctacac aatatcagac gagtcaggaa gacgaacgca
     1681 ccgacacgca gggaacgtct gtgatgacga aaaactaata tttccagctg gttatgacag
     1741 ttcatttcat gagtgagaac tatcgacaag tgttctgact gatgggatgc gctgagggat
     1801 tagtgtgtct tttttcacca gtgtcataca gggggcaata tggcagggaa aacagctcgt
     1861 tcaaaagtgg agaaattccg tcgcgatttt gtgaccttag cccgggatgc cggcagggca
     1921 tacgcgacgg ctgcagacag catgcgtatc gcgaaatact ttctgaacta ccttcgtgat
     1981 aacggtatta agctacgtca taccgacagt attaaaacac gtcatgtcac cggatatctc
     2041 cagttcagaa aatcacaggg gatttccgtg cggacaattc agaatgagcg ggctgctatt
     2101 cgtggcgttt tgaataaggc gggacgttat aagctggcag acccgaataa tccgctcctg
     2161 agtaataagg ctcttggatt agaaaaaagt agcaggtcgg gaacaaaatt accgttaagc
     2221 ccggaagaat ttcaaaaggc atttaaggag gttgagaaaa gcaaccgggg ggttgcagca
     2281 acaatgttac tttcttatac gctgggttta agaactaaag aggcagtgga gtcctgtaaa
     2341 tccgtgatga catggaaacg tgctcttgag tcaggggaac attcagttcg tgtaattttt
     2401 ggtacgaaag gaggaagagg acgaaatacg ctgattgttg ataaggacgc tttaaggcat
     2461 gcaataaatt atgctgaaaa agtaatgaag gaaaataacg gtaaattgat tgatcgtcct
     2521 gatattcgta aggcgattga tacctaccgt tatcatgtca gacgtgcggg tctgacaggt
     2581 gaaaaagcac ctcacagtat gcgttatcat ttttcacagg aagctcggga atattatgag
     2641 aagaatggtt tttctggtaa ggaaatatat gctcaggtgt caatggattt aggtcatgga
     2701 gacggaagag ggagatatgt aaaacaggtt tatttcagag atggtactga agatgagtaa
     2761 ctcatgttca gtcgatgagg cagggaatgt tttttaggga tttgctgatt ctaatgaggg
     2821 tttacattaa ttcataaaag cagatacaca gaaagtgatt atttgcgtca gtatgaaaga
     2881 ttgactttca gtggagtgtt ttttagtacc tgaaatttcc agctttatct cgtgcagact
     2941 tctcatgtac ctgtctttag cacgttaaaa aacttcagtt acggtcttga attttcattc
     3001 tcgctctggt taatatgata gcgcttaaaa cgttgcctta ggcaaccacc aatgttccag
     3061 tgatctgaga ggaacgcctt tgggtgatca cataaccaat gttccggcaa tctgagagga
     3121 acgccttcgg gtgattgcac accaatgtca ccgtagcctg agaggtgacg ccttcgggtg
     3181 gtacagccct ttaatctttg gaaatggctg tcgcattttt tgcgatgaag atatcctcaa
     3241 cattcacact tcgatactcg tctttcagca tttccggtgg gaaatcttcc cactgtggca
     3301 ggttttatac cggtattccg ggtacagact gttgatcatt ttggtccagt gtcttctttg
     3361 aaggagcgct cgttcgtatc gctcgctttg agacgtttaa accacaaatc ttacatcctg
     3421 cccatcgggg aaagcctccc cgatacggtg atggttttct ccgttttact tctggagaaa
     3481 actatgaaca tctttctgac ttctctggtc agtattctgc gtaaggcact tccacgtata
     3541 cgtcacggca aaagtgaatg gatcgccaat cacaccggtt atctgcgttt tcaggcagag
     3601 gtctggctgg atgataacga ccattttcac gcagtcgtca acaaacgttc cggctggatg
     3661 aatccacgct atgaacaggt ggtggattgt ggcaagtttg attcatttca ctgtgccatg
     3721 aataccgcgt actcccaggc acttgaactt gcacatcttc gctatgcctg ggaactgacc
     3781 gattagaaaa cgaatttcca ctgcattaac gttaccaccc aacaggggat ttttccccgt
     3841 agggggtaaa tccctctgtt gctgttctga caggaggatt tatgaacgtt tatcaactga
     3901 aaaaccgcac tgacgttttg atctggcttt cgctgattga gggcgatttg ctgagtatcc
     3961 aggcttctct gaacgccggt ttatatccgc tttatgatga caggcaggag gaaccggagt
     4021 ttgaatgtgc ggtatttaac tgtggtatgg ctttcggaga atttatggaa aggcttgaat
     4081 cagaagatat tgacgttctg acaacagccg gacatgaact gactggctcg attgaacata
     4141 tggggagaat gttgtgtgaa cccgtttgga cacaggctgt tcttctgggg cgcaatgaag
     4201 cccgggcaga ccgggctata tgcgctgcag aagcggatgg ctggctgtat gatcctgctt
     4261 agcatgagat tgtttttaac tttttgaggt ctgtactaca ggcctgtctg gggcggctgg
     4321 ctgagcgctg ccgttgtttt gtggtgctcc ccggaacatt accggctaac cattcctgtt
     4381 tttcgtctgt cagtggcaac ccgataaggg aacagctggc ggttgaaaga cggggaatgc
     4441 catagtatca acttttttac ccttgcgggg atgcccgcaa gggctcccgc attttacgca
     4501 ggaggcctga tatgggttga taattctatt attcatattt tccgtcgttg ttgacggggt
     4561 cgtattgttt tgtttcacac cccggggccc agccccgtca ggggcaggtt cctttatttc
     4621 tacagggatc ctatgtctca cattcacctt ccgtcggttt gtgaaaaaac cggcaacaca
     4681 ctgactccgg agcaggaaaa ccgcgtgcgc catctggtgc atgaggagtg ttattcccgc
     4741 gaccgcgcag cactgataaa gcttattggc ctgatgctcc tgctgaagct ggcgggaacc
     4801 ctcatgctgg caatgttgtt actggtgctg cgtctgttct gagaagaagg agattcacaa
     4861 tgatgttaac cacccgcttg tttgtatttt tgttgcacca tctctggcgc gtcatgcgct
     4921 ggaccgggct gacggtgtat cacggtattt cggtgttata tcgtcgaaga caggccagac
     4981 tgcaggcctc cgactggcgc ccccgaacgg tgtataccgg tcgctggcag ctggccgatg
     5041 atggtcagtt ctgcggtcgg gccgttgttc tccggctcag ggatgcgctg aaacccggcg
     5101 tggagctgct ttacttcggt gaagaggctg cggagccgta ttacagcgag agacaatttg
     5161 tagacgacag ggaatccgtg atggtggctg agcagatgtt gctgcggttt cttggcagcc
     5221 ggcaccggcg gcagaaccgg cgaaatgctc cagtgtcagt gctggttact gacgtagtga
     5281 caacagcccc ggttaatgat gaggccgcat gatggatata atggcgctgc tgagcagcac
     5341 gccgccggcc gtcgctatcg aggagccggt ctgggaacaa ctggtaaaat acccccaggc
     5401 tccggactgt gaaaacgaac ggctgcagcg gttgatatac cacggttttc aggcactcag
     5461 tcaggcacct tcggggcagg gaatagtgga gtttggctat ttctgtctcc cgcctgatgg
     5521 tgacctccat gccccattgt ggcagaacgt atgtattaaa cgtgaatatt cagacggtca
     5581 ggtgacactc actttcgatc gttaatcagt tttaccacct accctgacgg ggaaacccgt
     5641 gagggggacg ccgtcagatc tttttactca aaaggagtct gtatgagcgt aatgaccact
     5701 aacgaaaccc ctgcatccac agtagcagaa ccggaagttt ttcgaagaac ccgtaaccgt
     5761 ttcaaccagt ggttacaggc ggaatttgac cgacattatc acacgatgag ggatggcggt
     5821 tatcgcagct ttctgaagaa gaaccatccg acggagctgc tgcgctatga cgaggcatgc
     5881 gaggccttaa ggcgggaaga atttgcccgc tttgccgagc tgcagacgct ggggctgtac
     5941 ctgcatctgc aggtacagca aaaagaggcg cagttccggc ggcggcgtaa ccgtctgctg
     6001 ttggggatga ccttaacggg cgtggtgaca tcagtgttgt tatacggtca ctttcatcct
     6061 gagcagtttt tgctgatcgg acaggagctg gcgacgttgc ctggccgtat cctcggattt
     6121 gttggtcggc tggtaccgta atcacgtacg catcctgcgt tactgaacct tatcccgtag
     6181 ggagagtgac tccctgtggg ggcgctctcc ctttttttca ggagagcata tgaacacatc
     6241 gttacatccg gatgatatca gccggtttat ctccggccga cttatcagta gcctggctgc
     6301 aggccaggta ccgtggcggg gcacaattcc cgggttaccg gaacacgcgc ttacgggcgt
     6361 gccgtttacc ggtattaacg tactgttatt gtggcaggcc atgcagcagc gttcgcttcg
     6421 ttcaggaagg tggctgaccg gagatgacct ccgccaactg ggcggtcagg tcagatccgg
     6481 tgaaaagcca gtcaccctgg tccgctaccg gccttcgtta tcgcttttca aggtaattaa
     6541 ccctgaacag tgtgatggtc tgccggatac gctgcaaccg gggtggccac tgcctccacg
     6601 acctcagccg tcactgaatg tgatccgcga cctgcttcag aacagtgggg ttcccgtgat
     6661 ccacagggac aacgttttgc cggtataccg ggcattgcat gaccggattg agcttccacc
     6721 cgtggcatcg tatgtcggag aggagacata ctggcaggac atactgaatc tgctggttca
     6781 ggctaccgga catccgcagc gcttacatcg cttcggatta acagtggata cacgtaccga
     6841 tgaggttcat gaggccctgg ttgcagaact gggcgccgca tttctctcgg ctgctctggg
     6901 attaccggga gcgatgctat ccaggctgga tgtggcaccc tgggtgacat atttacaggg
     6961 ggacccgtgg cgtctctttc gggctgcgga agcagcgcga aaggcgatga tgtggctgaa
     7021 agagcgaaga ccctcgatga cgacagtgga gatgtggcag aagatggcct cattgattct
     7081 tgaaacgcat tacggttttt ctctcgatga caccacgctg ggatgtcgca gtgtggttga
     7141 gcggcatatt gaatgtggga tcactccact gatggcgatt aatgcactgg cccgcattta
     7201 ccagtgggaa cgctacgacc agcctcagcg gtcgctgttt atcaacgaag caggaccaga
     7261 cagtgaaata ctgactttgt ctgaaattcg tcccgaactg ctgacctgtt accgcgtgcc
     7321 tgtgccatcc ggtataccgg acaggaaagc ggaagcggtg caggtcgaaa gtttaccttt
     7381 gctcctggca ccggcggtgt cggaaggtaa gagtgcggcg aatgatgacg ggcctgatga
     7441 cccggatggt aatgacaatg ttgtggcgct gccctgggct gcccgcaggg gaaaggagaa
     7501 cccgcatata catcgttttg tcagtatctt taacggtatt gcacctcatg aaagccgctg
     7561 gcaggtattc agtgatttcg tccatatggc ggcctgttca ctgtacaacg ctgtacatcg
     7621 ggatcctgat tttgaagcgg actacatgag gcgggtatcc cactattcag ctgaagatgc
     7681 aaacaacatg gcccgtttac tgtcagaagt tgttatgggg ctggaattca gtccaacaga
     7741 tttcctgggg cgaatttata tgatatccgg actgggaaat tttcataacg cacagtattt
     7801 cacgccttac agcgtttcgt acgcgatggc gcgaatgaca ctcagtgacc gtatacctga
     7861 actttccagc ggggaacgag actttattac tgtcagcgat cctgccagtg gtgccggaag
     7921 tatggtcgtt gcgctggcag aagccatgct ggaggcggga tttaatccgc agaaacagat
     7981 ggtagcgtac tgtgtcgata ttgacccggt ggcctcgatg atgtgttaca tccagctatc
     8041 cctgatgggt attccggcca ttgtggctac cggcaacagc ctgaccgtgg agattaaacg
     8101 ggagatggca acaccaatgt ttgtactggg tcgttggcat caccggtggc aggcagatcg
     8161 gacgcgtaaa gcggcctagt tgcgtattta tcttcatccc gacagggttc tccctgtggg
     8221 gagaattcct gttctgaaca ggagtcactt atgctggcca gtttctatat tcaacggcag
     8281 ctcagtaaag cactgggcct cagtgtgaac gctgaggagg ttttttacca ggtggacgat
     8341 cgggagtcgg attacgtcaa taccgatatg gtactgaacc gtgaccggtt attgtccgtg
     8401 atgcagttta tgctggatga cgtggcgctt aatccggagc tccgggaaag atgccgtcag
     8461 gcagagcgta ttctgacact atggattcgt ggtctcgacg cgctggcaac agtgtctgag
     8521 gatatgtcga tactgccccg gacgattacg gagtgcagtg gacgagttga tcgtctgctg
     8581 ccgggggacc cacaggcact gctggcgctg ccggatgatg cattcttacg cctgaccgcc
     8641 cagtgtcacc tgatgtccgg agagcagttc ccccgggaac agcttgcagc gacgatgcct
     8701 tactggacgc gttttatggc gtggatagcc cgtgaacttt atcaggtgga agatcgttgt
     8761 ctggtgcaac tcgggcgtct ttatcgccgg ctgcacgtgg agcccaggaa aatacggtgc
     8821 tttaacctgg ctttcggacg tattgagctg catatgtccg gacgggatat tgatgaatgt
     8881 cagtatctct acgcgtatga cgacgcatcg ctggaagatt atctggagga aattatggcc
     8941 ggtaatctga cgccggttcg ctttgaagtg cgggtaatat accgcaacga ttcggagctg
     9001 aacgtcttca ggcgagacgc cgacgtgatt gatgtggaac atccccatgt cagcgactgg
     9061 cagaatgttg tcagcgaggc cctggactgg ctacgccagg aacggacgtc gctggttgag
     9121 atacctttaa cccggccggc actgaaactg gccgcctgat taaccactat accctcaggg
     9181 gattttcccc tgagggggaa aatcccttta ataaaccaga gaggattttc ccgtgagcat
     9241 tattgacgaa tatatcagcc agcatttctc agagcggctg tgtctggacg taaccgaaga
     9301 ggatattacc tggcagcttc gcggcagccg ttccgactac gtgaataccc ggatacagtt
     9361 tgaccgggaa aaactgatgg cggtgatgga tgtcatgctg tccggtctgg acagtgatga
     9421 aaccacgctg gcgcgctgcc ggcaggtact gacgctgtgg atagccggac tggatatgct
     9481 gtcgaaggag gcagaacaac ctgactggct tccccgggtt caccctcaca gcagtggtca
     9541 gtgcgacctg ctgctgaagg gaaaccctgc ggcgctgacg gaggcggacg aagaaacgta
     9601 cctgcgggtg accggccagc aggatttacc ggcacaccgg cgtattccac aggtgatatt
     9661 cagcaaaacg gtacgatact ggcaccgttt tgagagctgg ctggcgcagc agttgcagga
     9721 cattactcag cattgctatc agaaactgaa atgctttgtg gcgaactgca cgacagagcc
     9781 caggcagctg cgcgaattcc gcggggagta cggttcactg cgtttatttg tggggccgca
     9841 ggatatcgat gagatagaca ttctggagtt caatccggaa tacatcgtgt cctgggtcga
     9901 caaagtcgcg gacgggcttt ttactccagt ctgctttgtg gtgaatgttt actataaaaa
     9961 cggcattttg ctggagtcgt tcacctggga cagtgaggtg gataacatca acaggatgac
    10021 cagcagcgat tatggtgagg cgatgagcca ggccatcagc tgggtacgtg agcagtttga
    10081 gcagccggtg attgatcaac cggtaccaca gcagccacga ctggctgcat aaatcaacgg
    10141 taaacccacc ggggagaaac tctcccggtg gggatgtttc tccccttttt ttacaggaga
    10201 aacatcatgc tgaaattcag tgcaaaagac ttaaaaccgg tactgcttga ggcacgtaaa
    10261 aaccactgtg gcgtggtact ggtcaaggat catggcgttt atattatgtc tgaaaccggt
    10321 gagctcactc cgcgtggccg aaaagtggct tatgcgaagg gatgccatcc agaaaaggat
    10381 gaggcctggt gggataccgc ccgggcagaa gtagggggtg atgattttgg tgagacgata
    10441 aatctgacga aaagcatgat taaccgcatt ctgaacgaga ggaaaccgct gtatatcacg
    10501 gccagcaacg aagaatttaa gatcgagtgt taaaactgag cgggtctccg gacccgcgta
    10561 aaatcttacc ctgacggggg tattcccgtc agggagcgtg cacgaaagtg tgatgaatta
    10621 tcaacgacag cattaatcct tctggatgat caattgtgcg tatgtttttg atggatcggt
    10681 gacatctgcc tgatctgtct gttgcacaat tttccatccc tcccgggcaa gtgacgggat
    10741 agttccggaa atgctttcgc cgcatttaaa taccgtgtta tccgtcaact cggcattcgc
    10801 tgcagagttc gctaccgtct gtgatttaca aacgtgagct tctcctgcca gtgccggtcc
    10861 agctactaac agactggtta gtaatagtac gtttattctc atttaaacct cttttgttaa
    10921 catgcacatt aaaagaatgg ttattggcac tacgatagca gttcttcaga tggcaatgta
    10981 ttgattttca accatgaaat tcagcctttt tcactgagtc tcaatgagct gattcagcgc
    11041 aatcgtgcaa caggtaattc agcccagcga gtggtataag ctggagagag tagctctctt
    11101 ttcatctgcc actcaggggc tatccctctt ccggcaaacc acacttttcc catacctgaa
    11161 tggttgatac tgtcgagaac tttcatcaac tgctcacttc gttcgtgcgg ctgcacttca
    11221 tcaaaaagat ttaactgaga aatcccggtt ggtgtgaaat cattgagcat gcaacccgct
    11281 tttgcatatc tatgcccttt cacccagatc cgatccagtg ctttcaccgc tgcggctatg
    11341 atgtccctgg tatcctgcgt gggagtcgtc agtttctcac tggccacatt cccgtaatac
    11401 ggttcgttca cagcgaacgg tgacgtcttc acaaatacag caacatgtct gcagaattgc
    11461 cgctcgccgc gcagcttttc agctgcacgc tcagcatact gacagactgc ctggcgcatg
    11521 gcttcatatg ttgtgacgcg ctccccaaag gatcggctgc agacaatctg ctgcttgggt
    11581 ggcggagcct cctccagtga aatacagctt tccccgttca gttcacggac agttctctcg
    11641 agaacaacac tgaaattttt cctgataaat gttgggttcg cgcgcgccag ctgcagtgca
    11701 gttgttatcc ccattgtgtg cagtttcttc gagatccggc gaccaacccc ccagatttcg
    11761 tctactggct gcagtgacaa tagtttctcc gttcgctttg gattgcctga agtcagagca
    11821 agcacgccct caaactgccg ccattcctta gacgcccatt gtgcgctttt tgccagtgtc
    11881 ttggtcggtc ccatcccaac tccgatggtc agtccggttc ctgaatgtac atgctcgcgc
    11941 aactgccggc cgaagtcttc aaaatcgata caactgtcaa tattgcgcac atcaagaaac
    12001 atttcgtcga tagaatactg ctcaacgcga ggtgccagtt cttcgagatg cgccataaca
    12061 cggttcgaca tcgacgcgta gagttcgtag ttactcgaga acgcaacgac aggtacagga
    12121 aattcggttg ttttcagttg aaaccacgga acccccattt taatgcccag ttgcttcgct
    12181 tcttttgaac gcgcgataac acatccatcg ttgttactga gcaccacaac aggtgtatta
    12241 cgtaaatcgg gacgaaatac tttttcacag ctcgcgtaga agctgttgac gtcagccagg
    12301 gcgaacatca gtctttactc cgggttttgt gtacgaatgc gatcactaca ccgaatatct
    12361 gcagctcttc aggatagagg acagggtatg caggaatttc ggacgcgggt tcaactcccg
    12421 ccagctccac caaataaaac aatgggttac gtgaaaacgt agcccctttt tctttggtag
    12481 tggcgacaaa atggcggcaa gcatttatcg attaaaggac tacagatatg aataaacctc
    12541 taatagcctt attgctcatc accagcttca gcgcatctgc tgacaaaatc ccatcttcta
    12601 tccaaaacct gattgctgtt tacgatacca ggacgcacag cctagaagat ggtgggctga
    12661 ctatcagata taacaaacga cttttgctgg tagatgcagc tgaatcgatg ttccaaggca
    12721 tctgtaatga ttattatatg aacaagtgga aacctggcac gatcaagaga attacacttc
    12781 ttaatgtcac tagcgatcag ggctttgaaa tcaatgctgg aggggatgag tgtagaaaag
    12841 ctggcacaat gaaagacgag caggcgcgca cctatagaac cagctttatt aaacctcttc
    12901 aataatgaag tttaatgaaa cccatgattt tctttggttt cttgcggcat tcctcccttg
    12961 tctttttgag taagaatgcc atcaacttac cttaaaaatt catgtgccct tgcccactca
    13021 ctgttggatg tggaggagcg ttatttacca atgctggcgt aactataaag cgcactaccg
    13081 tttcatgggt gacaaaggtg ctaccacagt taatgttctg gcactggcag taacgctctt
    13141 ttgtgctgtc cgtaacctga aagctgctcc tagtgtgcgc tgagtgtcca cactttggac
    13201 aattcatcat tttgagtttc tccgc
//
LOCUS       DAJVSD010000113        13196 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.113, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000113 DAJVSD010000000
VERSION     DAJVSD010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 13196)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13196)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13196
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.113"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(246..563)
                     /gene="metJ"
                     /locus_tag="OQP62_002614"
     CDS             complement(246..563)
                     /gene="metJ"
                     /locus_tag="OQP62_002614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015855437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="met regulon transcriptional regulator MetJ"
                     /protein_id="HCS1722134.1"
                     /translation="MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRR
                     QVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGIDPET
                     WEY"
     gene            828..1988
                     /gene="metB"
                     /locus_tag="OQP62_002615"
     CDS             828..1988
                     /gene="metB"
                     /locus_tag="OQP62_002615"
                     /EC_number="2.5.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase"
                     /protein_id="HCS1722135.1"
                     /translation="MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAH
                     DYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYG
                     GSYRLFDSLATRGCYRVRFVDQGDERALQAALEEKPKLVLVESPSNPLLRVVDIAKIC
                     RLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVMIAKDPEM
                     VTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLY
                     HPSLPNNQGHEIAARQQKGFGAMLSFELDGDEETLRRFLGGLSLFTLAESLGGVESLI
                     SHAATMTHAGMSPQARAAAGISETLLRISTGIEDGEDLIADLENGFRAANKG"
     gene            1991..4423
                     /gene="metL"
                     /locus_tag="OQP62_002616"
     CDS             1991..4423
                     /gene="metL"
                     /locus_tag="OQP62_002616"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000110794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase II"
                     /protein_id="HCS1722136.1"
                     /translation="MSVIAQAGAKGRQLHKFGGSSLADVKCYLRVAGIMAEYSQPDDM
                     MVVSAAGSTTNQLISWLKLSQTDRLSAHQVLQTLRRYQCDLISGLLPADAADDLTSAF
                     ISDLERLAALLDGGVTDAVYAEIVGHGEIWSARLMSAVLNQQGLDAAWLDARAFLRAE
                     RAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNHDGETVLLGRNGSDYSATQIG
                     ALAGVSRVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPV
                     SGSDIDLQLRCSYTPDQGSTRIERVLASGTGARIVTSHDDICLIEFQVPASQDFRLAH
                     KELDQILKRAQARPLAVGVHRDRQLLQFCYTAEVADSVLKLLDDVGLPGELRLRQGLA
                     LVAMVGAGVTRNPLHCHRFWQQLKGQPVEFTWQSEEGISLVAVLRTGPTESLIQGLHQ
                     SVFRAEKRIGLMLFGKGNIGSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLNYE
                     GLDASRALAFFDDEAVEQDEESLFLWMRAHPYDDLVVLDVTASEQLADQYLDFASHGF
                     HVISANKLAGASASDKYRQIHDAFEKTGRYWLYNATVGAGLPINHTVRDLIDSGDTIL
                     SISGIFSGTLSWLFLQFDGTVPFTDLVDQAWQQGLTEPDPRVDLSGKDVMRKLVILAR
                     EAGYDIEPDQVRVESLVPAHCEEGSIDHFFENGDALNEQMVQRLEAARELGLVLRYVA
                     RFDANGKARVGVEAVRPEHPLAALLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGA
                     IQSDINRLAQLL"
     gene            complement(4486..4916)
                     /locus_tag="OQP62_002617"
                     /pseudo
     CDS             complement(4486..4916)
                     /locus_tag="OQP62_002617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000401539.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(5150..6274)
                     /locus_tag="OQP62_002618"
     CDS             complement(5150..6274)
                     /locus_tag="OQP62_002618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoplasmic protein"
                     /protein_id="HCS1722137.1"
                     /translation="MPPLFTINACKSAGCRNLGLPDSPDYVWPDYRLGYPALHCRACG
                     SYPPLFNEGEFRRWASAYIAQYAKEHGHFCPDCYQRTWIRYGRNPGGTQRLQCQYCKK
                     VWTPKQHALNVAETPEQICSIPLLVPFQGANAFQQLYFLFSFDAVRGNILHLSSNFTL
                     LSAGKSLHYHWKGIAPPEGEKGDIIHRIAIKERQFLQRSQFDEIQYGPAALKRNAQGT
                     ILRPVITAHGHFRVLKNRFPDVATHIIAHECFLRGAVITAWAERFRQRLSSLWFVEEE
                     INDDDCRAEWQLLGKTWQGWWQNQWQLWGQGHNRKMVCSLTGSHLEQGVAVNLAASRR
                     FVTWLWQQPEFQQSAHCSAKRVTQILYLLTEKYNSQWNHI"
     gene            6410..7966
                     /locus_tag="OQP62_002619"
     CDS             6410..7966
                     /locus_tag="OQP62_002619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HCS1722138.1"
                     /translation="MKVKLLAAGILFTLPFWACAKDVTIIYTNDLHAHVEPYKVPWIA
                     DGKRDIGGWANITTLVKQEKAKNKATWFFDAGDYFTGPYISSLTKGKAIIDILNTMQY
                     DAATIGNHEFDHGWDNTLLQLSRAKFPIVQGNIFYEDSSKSFWDKPYTIVEKDGVKIG
                     VIGLHGVFAFNDTVSAATRVGIEARDEIKWLQRYIDELKGKVDLTVALIHEGTPARQS
                     SMGNTDVRRALDKDIQTASQVKGLDILITGHAHVGTPEPIKVGNTLILSTDSGGIDVG
                     KLVLDYQEKPHQFTVKNFELKTIFADEWKPDPQTKQVIDGWNKKLDKVVQQTVAQSPV
                     ELTRAYGESSSLGNLAADALLFTAGKDTQLALTNSGGIRNEIPAGAVTMGAVISTFPF
                     PNELVTMDLTGKQLRSLMEHGAGLSNGVLQVSKGLEMKYDSSKPIGQRVTVLTLNGKP
                     IDDAAVYHIATNSFLADGGDGFAAFTEGQARNTSGGYYVSNAIVDYFKAGNTITDEQL
                     KGMRVADVKK"
     gene            8231..9469
                     /locus_tag="OQP62_002620"
     CDS             8231..9469
                     /locus_tag="OQP62_002620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014341216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HCS1722139.1"
                     /translation="MINNDPLFDLLNKEQQRQQHSLELIASENFASPAVLAAQGSVLT
                     NKYAEGYYQHRYYGGCKFIDEVEMLAITRAQQLFGARYVNVQPHSGSQANQAVYLALL
                     KPGDKILGMSLQCGGHLTHGSPVNQSGKWFNAFHYGVDAHSGLIDMDEVETIAKRERP
                     RLIIAGGSAYPRHYDFARFRRIADAVGAMLLVDMAHFAGLVAGGCFPSPLAYADVITA
                     TTHKTLRGPRGGMILTNDARLAKKIDSAIFPGLQGGPLMHVIAAKAVALGEALQPEFK
                     RYAGQVIENAQAMCQQLAQRGLTLLTGGTDCHLGIIDLRPQGLTGAQVEYFLELAGIT
                     VNKNTLLGDPQPPSITSGIRIGSAACATRGMKADDFTLIADWISEIIFAIKTPNIADI
                     CADIRQKVTKLTTNYPLPYQ"
     gene            9466..10572
                     /locus_tag="OQP62_002621"
     CDS             9466..10572
                     /locus_tag="OQP62_002621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000976816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase 3"
                     /protein_id="HCS1722140.1"
                     /translation="MMKLAEIQAACGVLCVDLAAVVDNYQTLARHVAPAQCGAVLKAN
                     GYGLGAEAIAPALYAANCRIFFVAQLSEGVALRNILSADAMVVLLNGVMPQAMPFCCA
                     QQITPLLNSVDQVMTWLALQEARSQRRPVLIQLDSGMSRLGVTPEQLARLAAIFRQRG
                     WAAPDYIISHLANADRPDHALNVYQHTLLQQAKKAFPTSRYSLANSCGMFLHPAWRED
                     LCRPGVALFGVAQPWFSTPLKPAFTLTLTILRVQDVPVGTPIGYGSTVTTTRPLRIAT
                     VSAGYADGIPRNLRPPAGVCWRGVRLPVLGRVCMDSFMVDASAIMPTSGDVVEFIGVS
                     QTLEEVAAACDTIPYEIMARLGARFRRIMQPAEA"
     gene            complement(10517..11998)
                     /locus_tag="OQP62_002622"
     CDS             complement(10517..11998)
                     /locus_tag="OQP62_002622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015606227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HCS1722141.1"
                     /translation="MNTANFESIHIMIDAQAWRNLPLHLRLYHAFRQLVISGALADGA
                     KLPSARALAQRLHLSRDTVENAYSQLQRDGFMTRRQGAGSFASRQGVPHIQGQHSLPP
                     SPRQTPTLSARWQTIADRAVSFDARRVQTFTLGLAETRNFPQTIWQNFARQIQRERAH
                     TLMLHGDPQGEQELRQQIAHYLNFERGAKVDAQQIVIVSGARQAFWLCGQLLAEAGQS
                     VVMENPGYPGARQAFSAAQLNLLPIEVDGDGIRVDKLPPAPLVYVTPSHQFPSGHLLS
                     LARRHALIDWAQAHNAWIIEDDYDSEFHYNGAPVACMQGLDREQRTLYVGTFSKTLYP
                     GLRIGYLVVPASLAAHFAAARNLLDGATPALTQLTLARFIASGHFAAHIRTMRSMYAV
                     RQACLAQAINQHLSDWVTPVVTPGGLQMPCWLHEGIDEQQTLNAARRAGLNIAGMRQF
                     WLTHPAPTGWLLGFAAFTPYEIENGVKLLRAALCAENVRQAGP"
     gene            12277..13167
                     /gene="metF"
                     /locus_tag="OQP62_002623"
     CDS             12277..13167
                     /gene="metF"
                     /locus_tag="OQP62_002623"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HCS1722142.1"
                     /translation="MSFFHANQREALNQSLAEVQGQINVSFEFFPPRTSEMEQTLWNS
                     IDRLSSLKPKFVSVTYGANSGERDRTHSVIKGIKERTGLEAAPHLTCIDATRDELRTI
                     ARDYWNNGIRHIVALRGDLPPGSGKPEMYAADLVGLLKEVADFDISVAAYPEVHPEAK
                     SAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFK
                     QAKKFADMTNVRIPSWMSLMFEGLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYT
                     LNRAEMSYAICHTLGVRPGL"
BASE COUNT         2921 a         3383 c         3813 g         3079 t
ORIGIN      
        1 tacgctttgc tacgtgaaac attaaataaa tattggaatt ttaaatataa taaaattata
       61 tcgattatgg catgccggga attttttcag gaaaataacg aagagaaact tatcatgtct
      121 gacaaattta tccaccgagg gctattcggg aagatgaacg tttagaacaa tgtcggagat
      181 agccgtgtac aggggaaatc gttaaaaaag cgcggccaga ggcgttctga ccgcatgctt
      241 tgctatcagt attcccacgt ttccgggtca atccccatct cacgcatgat ctcttttgcc
      301 gcttccggga tttcatcgct gcgctctttt cgcagatcgg catcatccgg caagggttgc
      361 ccggtaaagg cgtgcagaaa tgcttcacac aacagctcgc tgttggtggc gtggcgcagg
      421 ttgttcacct gacgacgcgt acgttcatcg gtgaggattt ttaacacctt cagaggaatg
      481 gaaaccgtaa tttttttgac ttgctcactc ttcttaccgt gctcagcgta tgggctgata
      541 tattcgccgc tccattcagc catgagatac ttaatcctct tcgtcattaa tattgaggtc
      601 tgaacctgag cccggaccat aatcgcgcgt agtttaccgt agtggcgcgg ccctgacacg
      661 aagttagcgg tcgcagatgt gcgctaatgc atataatttt aacggctatt tgcggtttgc
      721 tcaatctata cgcaaagaag tttaggtgtc cagatgtatt gacgtctatt gtggtagtgg
      781 ttaatctgtg gcctgacttt caccgactca gccaggaata tcttcatatg acgcgtaaac
      841 aggccactat cgcagtgcgt agcggattaa acgatgacga acaatacggc tgcgttgtgc
      901 cgccaatcca tctctccagt acctataact ttaccggttt caatgagccg cgcgcgcatg
      961 attattcccg ccgcggtaat cccacgcgtg atgtggttca gcgcgcatta gcggaactgg
     1021 aaggcggcgc gggcgcagta ttgacgaata ccggcatgtc ggcgattcat ctggtcacca
     1081 ccgttttcct caagccgggc gatctgctgg tcgcgccgca tgattgctac ggcggcagtt
     1141 atcgtctgtt tgacagtctg gcgacgcgcg gctgttatcg tgtgcggttt gtcgatcagg
     1201 gcgatgaacg cgccttacag gcggcgctgg aagaaaaacc gaagctggta ctggtagaaa
     1261 gtccaagtaa tccattgtta cgcgtggtgg atattgcgaa aatctgtcgg ctggcgcgcg
     1321 aggcgggcgc agtgagcgtc gttgataaca catttttaag cccggcgctg caaaatccgc
     1381 tggcgttggg tgccgatctg gtgttgcatt catgcacgaa atatctcaat ggtcattcgg
     1441 atgtcgtggc cggcgtgatg attgctaagg atccggaaat ggtcactgaa ctggcgtggt
     1501 gggcgaataa tattggcgtg accggcgggg cgtttgatag ctatctgctg ctgcgcggtt
     1561 tgcgaactct ggtgccgcgt atggagctgg cgcagcgcaa cgcgcaggcg attgtgaaat
     1621 atctgcaaac ccagccgttg gtgaaaaaac tgtatcaccc gtcgctgccg aataatcagg
     1681 gacatgagat tgccgcgcgt cagcaaaaag gctttggcgc aatgttgagt tttgaactgg
     1741 atggggatga ggagacgcta cgtcgttttc tgggcgggct gtcgctgttt acgctggcgg
     1801 aatctttagg gggagtggaa agtttgatct ctcacgccgc caccatgacg catgccggta
     1861 tgtcgccgca ggcgcgtgcc gccgccggga tctccgaaac gctactgcgt atctccaccg
     1921 gtattgaaga tggcgaagat ttaattgccg acctggaaaa tggcttccgg gctgcaaaca
     1981 aggggtaaac atgagtgtga ttgcgcaggc aggggcgaaa ggtcgtcaac tgcataaatt
     2041 tggcggcagt agtctggcgg atgtgaagtg ttacctgcgt gtcgcaggca ttatggcgga
     2101 gtattcgcag cctgacgata tgatggtagt gtccgccgca ggcagtacca ccaaccagtt
     2161 gattagctgg ctcaagttaa gccagaccga tcgcctttct gcgcatcagg tattacagac
     2221 gttacgccgc taccagtgcg atctgattag cgggctgctt cccgccgacg cggcagatga
     2281 cttaaccagc gcttttatca gcgatctgga acgtcttgcc gccttgctcg acggcggcgt
     2341 aacggatgcc gtctatgctg agatcgtcgg acacggcgaa atttggtcgg cgagattgat
     2401 gtccgccgtc ctgaatcagc aggggctgga tgccgcctgg ctggacgcgc gcgcattttt
     2461 acgcgccgaa cgcgccgcac agccgcaggt tgatgaagga ctatcttatc ctttattgca
     2521 acagctactg gcgcagcatc ctggcaaacg tctggtcgtg accgggttta tcagccgcaa
     2581 tcacgacggc gaaacagtcc tgttaggccg taacggttcc gactattccg ccacgcaaat
     2641 cggcgcgttg gcgggcgttt cccgcgtgac catctggagc gatgtcgcgg gcgtttatag
     2701 cgccgacccg cgcaaagtga aagatgcctg cctgctgccg ttgctgcgtc tggacgaagc
     2761 cagcgagctg gcgcgtctgg cggcgcctgt tctgcacgcc cgcacgctac agccagtgtc
     2821 cggcagcgat atcgatttgc agttgcgctg tagctacacg ccggatcaag ggtcaacccg
     2881 aattgaacga gtgctggctt ccgggacggg cgcgcgtatc gtgaccagtc acgatgatat
     2941 ctgtctgatt gagtttcagg tgcccgccag ccaggatttc aggctggcgc acaaagagct
     3001 cgaccaaatt ttaaaacggg cgcaggcgcg tccgctggcg gtgggcgtgc atcgcgatcg
     3061 ccagctattg cagttctgct ataccgccga ggtagcggat agcgtactga aactcctcga
     3121 cgatgtcgga ctgccgggcg aattgcgcct gcggcagggg ctggcgctgg tggcgatggt
     3181 cggtgcgggc gtcactcgca atccgctaca ctgccatcgc ttctggcagc agttgaaagg
     3241 tcagccagtg gagtttacct ggcagtcgga ggagggcatc agtctggtgg cggtgctgcg
     3301 taccggcccg actgagagcc tgattcaggg gctgcaccag tctgttttcc gcgccgaaaa
     3361 acgcattggc ctgatgctgt tcggtaaggg gaacatcggc tcccgttggc tggaactatt
     3421 tgcccgtgaa caaagcacgc tttccgcgcg tactggtttt gaatttgtgc tggcgggcgt
     3481 ggtggatagc cgccgtagcc tgttgaatta tgaagggctg gacgccagcc gcgcgctggc
     3541 attctttgat gatgaagccg ttgagcagga cgaagagtcg ctattcctgt ggatgcgtgc
     3601 gcatccgtat gatgatttag tggtgctgga tgtgacagca agcgagcaac tggccgatca
     3661 gtaccttgat ttcgccagcc acggttttca tgtgattagc gccaataaac tggcgggcgc
     3721 aagcgccagc gataagtatc gccagattca tgacgcgttt gaaaaaaccg ggcgttactg
     3781 gctgtataac gccaccgtgg gcgcggggtt gccgatcaac cacacggtgc gggatctgat
     3841 tgacagcggc gatacgattc tctcgatcag cgggatcttc tccgggacgc tatcctggct
     3901 gttcctgcaa tttgacggca cggtgccgtt taccgatctg gtggatcagg cctggcagca
     3961 ggggctgacg gaacccgatc cgcgcgtcga tctttccgga aaagatgtca tgcgtaagct
     4021 ggtgattctg gcgcgcgagg cgggatacga catcgagccg gatcaggtgc gtgtagaatc
     4081 gttggtgccg gcgcactgtg aagaagggtc tatcgatcac tttttcgaaa acggcgacgc
     4141 gctgaatgaa cagatggtgc agcgtctgga ggcagcccgc gaactggggc tggtgttgcg
     4201 ttacgtggcg cgtttcgacg ccaatggcaa agcgcgcgtc ggcgttgaag cggtgcgtcc
     4261 ggagcatccg ctggcggcgc tgctgccgtg cgataatgtc tttgctattg aaagccgctg
     4321 gtatcgcgat aacccgctgg tgatccgtgg gccgggcgcg ggtcgcgatg tgaccgccgg
     4381 ggcgattcag tcggatatca accgcctggc gcagctattg taatacgccc gcctgccgga
     4441 tagcggcttc gccagatccg gcagcgggca aaccggggta tctgtttatt cttcgtcaga
     4501 tgcgttttct gcattggcga cgataaatcg gttcatcttc gcctggataa tggctatgcc
     4561 gacagggggg aacagcaatg cccaaaatag cgtccagccg ctctgtatac ctgtattttc
     4621 gtttgcattc gcccgcaatg tttggatttc gtcgctaagc gtcagacaca atattgctgt
     4681 gctatgataa gcctgactac gtcagatggg ccatttacgc caacgagaat aagaccaata
     4741 cgatcggctg gaatagacag tgatttactc caaaaataaa caccatacga cgatcccagc
     4801 gaactgataa aagagagcgc caaaaagaaa aaagtgatcc cccagaatcg gtagctactc
     4861 aggagatcgg cgcaggtcca ttttttatct gacattgacg gtaaagtaat ttccatattt
     4921 atcccttgtt ttccatagaa aataagaatg tatagagcta ttcaaattga taataaatat
     4981 tgattatgtg aataacgttt atagccgatc ttaacgcaaa acgaagggcc atttatcaaa
     5041 tagctctatt ctttttcagc gtgtaaaagc aggatgtgag gtgattaaat ctatagcgcc
     5101 ttctgaatga taatctgtga ttttttatgc gtggcattac atcattgagt taaatgtgat
     5161 tccattgtga gttatatttt tccgtcagca aatacagaat ttgtgtgacg cgtttggcgg
     5221 aacagtgggc gctttgctgg aattcaggtt gttgccatag ccaggtaaca aagcggcgac
     5281 tggccgccag attaacggcg acaccttgtt ctaagtggga accggttaac gaacagacca
     5341 ttttgcggtt gtgaccttgc ccccagagtt gccactgatt ttgccaccat ccctgccatg
     5401 ttttgcctaa cagttgccac tctgcgcggc aatcgtcatc gtttatctct tcctcaacga
     5461 accacagcga ggagagacgc tggcgaaacc gctccgccca tgccgtaatg accgcgccgc
     5521 gcaaaaaaca ctcatgggca atgatgtgtg tcgcgacatc aggaaagcgg tttttcagca
     5581 cccgaaaatg accatgcgcc gtaatcaccg ggcgaagtat tgttccttgc gcgttacgtt
     5641 taagcgccgc cgggccatac tgaatctcat cgaactggct gcgctgtaaa aattgccgtt
     5701 ctttaatggc gatacggtga ataatatcgc ccttctcgcc ctcgggcggc gcaattcctt
     5761 tccagtggta atgcaaactc tttccggcag aaagtaacgt gaaattgctg gaaaggtgaa
     5821 gtatattgcc gcgaacagca tcaaaactga ataaaaagta caattgttgg aaggcattcg
     5881 ctccctgaaa cggtacgagc agcggaatac tgcaaatctg ttccggcgtt tcggcgacat
     5941 tcagcgcgtg ctgttttggc gtccagacct tcttacagta ctggcactga agtcgctgcg
     6001 ttccgccggg attacgtcca taacgaatcc atgttctttg atagcaatcg gggcaaaagt
     6061 gaccatgctc tttggcatat tgcgcgatgt aagcagacgc ccagcggcga aattccccct
     6121 cgttgaagag cggtggataa ctgccgcagg cccgacaatg caatgccgga taacccaggc
     6181 gatagtccgg ccacacataa tccggcgagt caggcagccc aagattgcga caaccagcgc
     6241 ttttgcaggc attaatggtg aacagaggcg gcatacattt taccaacgat tttggcaggt
     6301 cgttgattct gccttcataa aacggtacgc gggtgtgagg actctcacat aaaaaaacct
     6361 ttcagaacgt aacgtagcga atctttatat gactgaaagg gacttattta tgaaagtaaa
     6421 actgcttgct gccggtattt tgttcacgct gccgttctgg gcctgcgcca aagatgtcac
     6481 cattatttac accaacgatc tacacgccca tgtggagcct tataaagtac cgtggattgc
     6541 tgacggtaaa cgcgatattg gcggttgggc caatatcact acgctggtga agcaggaaaa
     6601 agccaaaaat aaggcgacgt ggttttttga tgccggagat tactttaccg gaccgtatat
     6661 cagcagcctg acgaagggta aagcgattat cgatattttg aataccatgc agtatgacgc
     6721 tgccactatc ggtaatcatg agttcgatca tggctgggac aatacattgt tgcaactgag
     6781 ccgggcgaaa ttccctatcg tacagggcaa tattttttat gaggacagca gtaaatcctt
     6841 ctgggataag ccgtacacca ttgttgaaaa agatggcgtc aagattggcg taatcggctt
     6901 acacggtgtc tttgctttta atgatacggt ttctgccgcg acgcgcgtgg gcattgaggc
     6961 tcgcgatgaa attaagtggc tgcaacgtta cattgatgaa cttaaaggta aagtcgatct
     7021 gaccgtcgcg ctgatccacg aaggcacccc ggcccgccag tccagcatgg ggaataccga
     7081 tgtgcgacgc gcgctggata aagatattca gaccgcaagt caggtaaaag ggctggatat
     7141 tttgattacc ggccacgcgc atgtcggtac gccggaaccg attaaagtcg gtaatacgct
     7201 gatcctctca acggacagcg gcggtattga tgtcggcaaa ctggtgctgg actaccagga
     7261 aaagccgcat cagtttaccg tgaagaactt cgagctgaag accatttttg ctgatgagtg
     7321 gaagcccgat ccgcaaacga aacaggtgat cgacggctgg aacaaaaagc tcgataaagt
     7381 cgtgcagcaa acggtggcgc agtcgccggt tgagctgacc cgcgcgtatg gcgaatcgtc
     7441 gtcgctgggg aatctggcgg cggatgcgct gctttttacg gcggggaaag acacccagtt
     7501 agcgcttact aactctggcg gtatccgcaa cgaaatcccg gctggtgcgg tgacgatggg
     7561 ggcggtaatc agtaccttcc cgttccctaa tgaactggtc acgatggatt taaccggtaa
     7621 acaattgcgc agcctgatgg agcatggcgc cggattaagc aacggcgtgt tgcaggtgtc
     7681 taaagggctg gagatgaagt atgacagcag caaacctatc ggccagcggg ttaccgtgct
     7741 gacgctcaat ggcaagccga ttgatgatgc ggcggtttat cacatcgcta ccaacagctt
     7801 ccttgccgac ggcggcgatg gttttgcggc gttcacggaa ggccaggcac ggaacacctc
     7861 cggcggctac tatgtgtcga atgcgatagt tgattacttt aaggcgggca acaccatcac
     7921 ggatgagcag ctcaaaggaa tgcgtgttgc ggatgtgaag aagtaagggg ttacttgcct
     7981 gtgcgcaatg gcctttagcg cattcaggcc ggacggcggt atgtctggcc tggatcattc
     8041 gtggaccgcg gatatcaacc gtctggcgta gcttctgtaa ttttgccggg ttacgcgccg
     8101 cgttcccggc atgttcctgc cgaaatttac ccctctatcc ggtggtctgc gtcctgcgta
     8161 aaaagtggcg gggtgcgggg gaaactttcc ctgcgaaaat catcatatga tgaattttcg
     8221 ggggaaccgc atgataaaca acgatccgct ttttgattta cttaataaag agcaacagcg
     8281 ccagcagcac tcgctggaac tgattgcctc ggagaatttc gccagccctg ccgttcttgc
     8341 ggcacaaggg tcggtgttaa ccaataaata cgccgaaggc tattaccagc accgctacta
     8401 cggcggctgt aagttcattg atgaggttga gatgctggcg ataacccgcg cgcagcaact
     8461 tttcggcgcg cgttatgtta acgtgcagcc tcactccggc agccaggcga atcaggcggt
     8521 atatctggcg ctgctgaaac ccggcgacaa aattctgggc atgagcctgc aatgcggcgg
     8581 ccatctcact cacggctcgc cggtcaatca atccggcaaa tggtttaacg cctttcacta
     8641 tggcgtcgat gcgcatagcg gtcttattga tatggatgag gttgagacga tcgcgaagcg
     8701 tgagcgcccg cggctgatta tcgccggggg atcggcctac ccacgacact atgattttgc
     8761 ccgctttcgc cgcattgccg atgccgtcgg cgcgatgctg ctggtggata tggcgcattt
     8821 tgccgggctg gtggcgggcg gctgtttccc ctcgccgctg gcgtatgccg atgtgattac
     8881 cgccaccacg cataaaacgt tgcgcgggcc gcgtggcggc atgattctga ccaacgacgc
     8941 ccggctggcg aaaaaaatcg acagcgccat ctttcccggc ttgcagggcg ggccgttgat
     9001 gcacgttatc gcggctaaag cggtggcgct tggcgaagcg ctacagcctg aatttaaacg
     9061 ttacgccggg caggtaatcg aaaatgcgca agcgatgtgc cagcaactgg cgcagcgcgg
     9121 cctgacgctg ttaacgggcg gtaccgactg ccatctgggc attatcgacc tgcgcccgca
     9181 ggggttaacc ggcgctcagg tggaatactt tctcgaactg gcggggatca cggtcaataa
     9241 aaacacgttg ctaggcgatc cacagccgcc gtcgattacc tccgggattc gcattggcag
     9301 cgcagcctgc gccacccgcg ggatgaaggc cgatgatttt acgctgatcg cggactggat
     9361 cagtgaaatt atttttgcca tcaagacgcc gaatattgca gatatttgcg ccgatattcg
     9421 gcaaaaagtg actaaattaa ccaccaacta tccgttgcct taccaatgat gaaacttgct
     9481 gaaattcagg cggcgtgcgg cgttctttgt gtagatctcg ccgctgtcgt tgacaattat
     9541 caaacgctgg cgcgccatgt cgcccccgcg caatgcggcg cagtactgaa agccaatggc
     9601 tatggcttgg gggcggaggc gattgcgcca gccctgtatg cggccaattg ccggatcttt
     9661 tttgtcgcgc aactttctga aggggtggcg ctacgtaaca tcctgtcggc tgacgcgatg
     9721 gtggtgttgc ttaatggcgt catgccgcag gcgatgccgt tttgttgcgc gcaacagatc
     9781 acaccattgt tgaattccgt tgaccaggtg atgacgtggc tggcgttaca ggaggctcgg
     9841 tcgcagcggc gtccggtctt gatccagctt gactctggta tgtcgcggct gggggtgacg
     9901 ccggagcaac tggcgcggct ggccgcgatt tttcgccagc gtggctgggc tgcgccagac
     9961 tatatcatca gccatctggc caacgccgac aggccggatc atgcgttaaa tgtctatcag
    10021 catacgctac tccagcaggc aaaaaaggca ttcccaacca gccgttattc gctggcaaat
    10081 tcctgcggta tgtttctgca tccggcctgg cgggaagatc tttgccgtcc gggcgttgcg
    10141 ctgttcggcg tcgcccagcc gtggttttca acgccgttaa aaccggcatt tacgctgacg
    10201 ttgaccattt tgcgcgtgca agacgtgccg gttgggacgc cgattggcta cggcagtacg
    10261 gttactacca ctcgcccgct gcgtatcgcc acggtatccg ccggatacgc tgatgggatt
    10321 ccgcgtaatt tgcgtcctcc ggcgggcgtg tgctggcgcg gggttcggtt gccggtgttg
    10381 gggcgggtct gcatggacag ctttatggtg gacgccagcg ccatcatgcc aacgtctggc
    10441 gatgttgtgg agtttattgg cgtgagccag acgctggaag aggttgctgc cgcctgcgat
    10501 accatccctt atgagattat ggcccggctt ggcgcacgtt ttcggcgcat aatgcagccc
    10561 gcagaagctt gactccattt tcaatctcgt agggggtaaa cgcggcgaat cccaacagcc
    10621 agcccgtggg cgcggggtgc gtcagccaga actggcgcat cccggcgatg tttaacccgg
    10681 cccgccgcgc ggcgttaagg gtctgttgtt cgtcaatacc ttcatgcagc cagcagggca
    10741 tttgtaatcc tccgggcgtc actaccggcg tcacccaatc actaagatgc tggttgatgg
    10801 cctgcgccag gcacgcctgc cgcaccgcgt acatactgcg catggtgcgg atatgggcgg
    10861 caaaatggcc ggatgcgata aatcgcgcca gcgtcaattg ggtcaacgcg ggcgttgcgc
    10921 catcaagcaa attacgcgca gcggcaaagt gcgcggccag cgacgcaggc accaccagat
    10981 aaccaatgcg cagaccgggg tagagcgttt tgctgaaggt gccgacatac agggtgcgct
    11041 gctcgcgatc taacccctgc atacaggcga cgggcgcgcc gttgtagtga aattcactgt
    11101 cgtagtcatc ttcgataatc caggcattat gcgcctgtgc ccagtcaatc agggcatgac
    11161 gccgcgccag agagagcaaa tgaccggagg gaaactggtg cgacggcgta acgtaaacca
    11221 gcggcgcagg cggcagttta tccacccgaa taccgtctcc atcgacttca atgggaagaa
    11281 ggttgagctg tgcggcagag aatgcctgac gcgcgccggg atagcctgga ttttccatca
    11341 ccaccgactg cccggcctct gccagcagtt gcccgcatag ccagaatgcc tgacgcgcgc
    11401 cactgacaat cacaatctgc tgcgcgtcga ccttcgcgcc gcgttcaaaa ttgagataat
    11461 gggcaatttg ctggcgcagt tcctgctctc cctgcggatc gccatgcagc attagcgtat
    11521 gcgcccgctc gcgctggatc tggcgggcaa aattctgcca aatggtttgc gggaagtttc
    11581 gcgtttccgc aaggccgagc gtaaacgtct gcacccggcg ggcatcgaaa gatacggcgc
    11641 gatcggcaat cgtctgccag cgggcgctaa gcgtgggcgt ctggcgaggc gatggcggca
    11701 ggctgtgctg cccctgaata tgcggaaccc cctggcggct ggcgaaactc ccggcccctt
    11761 gcctgcgggt cataaagccg tcgcgctgaa gctgggaata ggcattttcg acggtatccc
    11821 tggaaaggtg cagccgctgg gccagcgcgc gagcggaagg tagctttgcg ccatcagcca
    11881 acgcaccgga aattaccaat tggcgaaaag cgtggtacag gcgcagatgc agcggtagat
    11941 tgcgccacgc ttgcgcgtcg atcatgatat gtatcgactc gaaattcgct gtgttcatct
    12001 tctggttccc ccgtccctgc gtcgccaaag tcgttgaatc atatcattta cgccttattt
    12061 tttatgtgtt gaagaacacc cggaaccgta tgaagaaggt attgctcaag atgatggaga
    12121 atgaagtttt ttcaactttg ctgaatattc ctcattcttt ggcgtgattt ttcagttgac
    12181 gtccttccgc ttttccgtca tttttacatc tggacgtcta aacggataga tgtttacagc
    12241 acaacaaata ataacatgcg attgatgagg taaggtatga gcttttttca cgccaaccag
    12301 cgggaagccc tgaatcagag cctggcggaa gtacagggtc agattaacgt ttcgtttgaa
    12361 tttttcccgc cgcgcaccag tgaaatggag caaaccctgt ggaactccat cgatcgcctg
    12421 agcagcctga aaccgaagtt tgtttcggta acgtatggcg ccaactccgg ggaacgtgac
    12481 cgcactcata gtgttattaa aggcattaaa gagcgtactg ggcttgaggc cgcgccgcac
    12541 cttacctgta ttgacgccac gcgcgatgaa ctgcgcacca tcgcccgcga ctactggaat
    12601 aacggtatcc gccacattgt tgctttgcgc ggcgatttgc cgccgggcag cggtaagccg
    12661 gagatgtacg ccgccgatct ggttggtttg ctcaaagagg tggccgattt cgatatttca
    12721 gtagcggcct atccggaggt acatccggaa gcgaaaagcg cgcaggccga tctgcttaat
    12781 ctgaagcgta aagtggatgc tggcgctaac cgcgcgataa cccaattttt cttcgatgtg
    12841 gaaagctatc tgcgttttcg cgaccgctgt gtttccgccg gtatcgacgt agaaattatt
    12901 cccggcattt taccggtgtc taactttaaa caggcgaaaa aatttgccga tatgaccaat
    12961 gtccgcattc cgtcctggat gtcgctgatg tttgaggggc tggatgatga cgcagaaacc
    13021 cgcaagctgg tgggcgctaa cattgcgatg gacatggtga aaattttaag ccgcgaagga
    13081 gtgaaggatt tccacttcta cacgttgaat cgtgcggaaa tgagttatgc catttgccac
    13141 acgctgggcg taagaccggg tttataacct ccagctccct gccgggagct ttatta
//
LOCUS       DAJVSD010000114        13049 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.114, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000114 DAJVSD010000000
VERSION     DAJVSD010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 13049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13049
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.114"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(85..462)
                     /locus_tag="OQP62_002624"
     CDS             complement(85..462)
                     /locus_tag="OQP62_002624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001535855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCS1722143.1"
                     /translation="MHKYLSVVKKHRVPLSDAAVDLLKDLPRLKDNNHVFPAPRAETL
                     SDMSLLAVLKRMGYIDLTQHGFRSTFREWAGEATDYQREVIEHALAHQLADKAEAAYQ
                     RGTLWPKRVALMDDWTGYSTANS"
     gene            complement(821..908)
                     /locus_tag="OQP62_002625"
     tRNA            complement(821..908)
                     /locus_tag="OQP62_002625"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(872..874),aa:Ser,seq:gga)
     gene            complement(1057..1734)
                     /locus_tag="OQP62_002626"
     CDS             complement(1057..1734)
                     /locus_tag="OQP62_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HCS1722144.1"
                     /translation="MSSPASFNGLRPVIDVNDSVMLLIDHQSGLFQTVGDMPMPELRA
                     RAAALAKMATLAKMPVITTASVPQGPNGPLIPEIHANAPHAQYIARKGEINAWDNEDF
                     VKAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITLAR
                     IVQAGVVPMDTAAVASELQGTWNREDAAAWADVYTQVFPAYQLLIESYSKAQDVVKNN
                     EMLDSQR"
     gene            complement(1754..2614)
                     /locus_tag="OQP62_002627"
     CDS             complement(1754..2614)
                     /locus_tag="OQP62_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HCS1722145.1"
                     /translation="MKQITGVYTAPRPHWVGDGFPVRSLFSYQSHAQQLNPFLLLDYA
                     GPHTFTPGNEKRGVGEHPHRGFETVTIVYSGEVEHRDSTGRGGVIGPGDVQWMSAGAG
                     ILHEEFHSDAFTRRGGELEMMQLWVNLPMKDKMTTPGYQSITHDVIPTVTLPDDAGVV
                     RVIAGRYEETKGPAHTFSPLNVWDMRLQRNRQLTLAQPEGWSAALVVLKGNITVNGTT
                     PANEAQLVVLSQQGKTLHLEASSDASVLLLSGEPLNEPIVGYGPFVMNTKQEIAEAVR
                     DFNSGRFGQI"
     gene            2723..3634
                     /locus_tag="OQP62_002628"
     CDS             2723..3634
                     /locus_tag="OQP62_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1722146.1"
                     /translation="MIKTDLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEE
                     RLGVRLIQRTTRQFNVTEVGQTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPV
                     TLLHVHIGPMLAKFMARYPDVSLQLEATNRRVDVVGEGVDVAIRVRPRPFEDSDLVMR
                     VLADRGHRLFASPDLIARMGIPSAPAELSHWPGLSLASGKHIHRWELYGPQGARAEVH
                     FTPRMITTDMLALREAAMAGVGLVQLPVLMVKEQLAAGELVAVLEEWEPRREVIHAVF
                     PSRRGLLPSVRALVDFLTEEYARMVEE"
     gene            complement(3725..3943)
                     /gene="infA"
                     /locus_tag="OQP62_002629"
     CDS             complement(3725..3943)
                     /gene="infA"
                     /locus_tag="OQP62_002629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HCS1722147.1"
                     /translation="MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNY
                     IRILTGDKVTVELTPYDLSKGRIVFRSR"
     gene            complement(3871..4254)
                     /locus_tag="OQP62_002630"
     CDS             complement(3871..4254)
                     /locus_tag="OQP62_002630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722148.1"
                     /translation="MFSAHFLLGCYNCCRRIGLAHYHAARCQVTPIVYFTVPLYVALM
                     SIHQAVVSGKRCITRRCRVSRNHVLNLVCCVLNAQIFTYQKKFGIILPVQIMVVIPQR
                     IRWPKKTILKCKVPFSKRYLIPCSA"
     gene            complement(4255..4959)
                     /gene="aat"
                     /locus_tag="OQP62_002631"
     CDS             complement(4255..4959)
                     /gene="aat"
                     /locus_tag="OQP62_002631"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HCS1722149.1"
                     /translation="MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQH
                     GIFPWFSPGDPILWWSPDPRAVLWPEKFHLSRSMKRFHNASPYRVTLNYAFDRVIDGC
                     ANHRDEGTWITRGIEEAYRRLHELGHAHSIEVWRDRELVGGMYGVSQGALFCGESMFS
                     RQENASKTALLVFCAEFTRHGGKLIDCQVLNSHTASLGAIEIPRRDYLDHLAALRQQP
                     LASRFWVPRTLFLPRK"
     gene            complement(5004..6725)
                     /gene="cydC"
                     /locus_tag="OQP62_002632"
     CDS             complement(5004..6725)
                     /gene="cydC"
                     /locus_tag="OQP62_002632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter ATP-binding
                     protein/permease CydC"
                     /protein_id="HCS1722150.1"
                     /translation="MRALLPYLTLYKRHKWMLTLGIALAILTLLASIGLLTLSGWFLS
                     ASAIAGFAGIYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSK
                     LLPLSPAGLARYQQGELLNRIVADVDTLDHLYLRVISPLVGAFVVIMIVTLGLSVLDV
                     TLAITLGGIMLLTLFIMPPVFYRAGKNTSQNLTHLRGQYRQQLTSWLQGQAELTIFGA
                     SKRYRAQMEATELQWHEAQRRQSELTALSQALMLLIGALAVMLMLWMASGGVGGNMQP
                     GALIALFVFCALAAFEALAPVTGAFQHLGQVIASALRITELTEQKPEVTFPQAETPAP
                     EKVTLTLRDVSFRYPDQPINALNALSLQANPGEHVAILGRTGCGKSTLLQLLTRAWDP
                     QQGEILLNDLPLSSLSESALRRTISVVPQRVHLFSATLRDNLLLAAPNASDEALSDML
                     RRVGLENLLEDSGLNSWLGEGGRLLSGGELRRLAIARALLHDAPLMLLDEPTEGLDAT
                     TESEMLELLADVMREKTVLIVTHRLRGLARFDQIIVMDDGRIIERGTHAELLAGQGRY
                     YQFKQRL"
     gene            complement(6726..8492)
                     /gene="cydD"
                     /locus_tag="OQP62_002633"
     CDS             complement(6726..8492)
                     /gene="cydD"
                     /locus_tag="OQP62_002633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter
                     permease/ATP-binding protein CydD"
                     /protein_id="HCS1722151.1"
                     /translation="MNKTRQKELTRWLKQQSVISQRWLNISRLLGFMSGVLIVAQAWI
                     MARILQHMIMENIPREALLLPFILLILIFVLRAWVVWLRERVGFHAGQHIRFEIRRQV
                     LDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVCVPLLIVAAIFP
                     SNWAAALILLGTAPLIPLFMAMVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIF
                     GRGEAETESIRAASQDFRQRTMEVLRLAFLSSGVLEFFTSLSIALVAVYFGFSYLGEL
                     NFGHYGTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFLETPLAH
                     PARGEVELAENEPVTIDAVNLIITSPEGKTLAGPLNFSLAAGERAVLVGRSGSGKSSL
                     LNVLSGFLSYQGSLRINGVELRDLSPESWRQHLSWVGQNPQLPAATLRENVLLARPDA
                     SEQELYAALDAAWVSEFLPLLPQGVDTPLGNHASRLSVGQAQRVAVARALLNPSQLLL
                     LDEPAASLDAHSEQRVMQALKAASKRQTTLMVTHQLEDLADWDAIWVMQDGAIVEQGS
                     YAELSAANGAFATLLAHRQEDI"
     gene            complement(8606..9574)
                     /gene="trxB"
                     /locus_tag="OQP62_002634"
     CDS             complement(8606..9574)
                     /gene="trxB"
                     /locus_tag="OQP62_002634"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HCS1722152.1"
                     /translation="MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL
                     TTTTEVENWPGDPNDLTGPLLMERMHEHAAKFETEIIFDHINNVDLQNRPFRLTGDSA
                     EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE
                     EALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGV
                     TGLRLRDTQQSDNIETLDIAGLFVAIGHSPNTALFEGQLELENGYIKVQSGTHGNATQ
                     TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADASK"
     gene            10121..10615
                     /gene="lrp"
                     /locus_tag="OQP62_002635"
     CDS             10121..10615
                     /gene="lrp"
                     /locus_tag="OQP62_002635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001591745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-responsive transcriptional regulator
                     Lrp"
                     /protein_id="HCS1722153.1"
                     /translation="MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTP
                     CLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVKKLEE
                     IQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLV
                     IKTR"
     gene            10750..>13049
                     /gene="ftsK"
                     /locus_tag="OQP62_002636"
     CDS             10750..>13049
                     /gene="ftsK"
                     /locus_tag="OQP62_002636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HCS1722154.1"
                     /translation="MSQEYTEDKDVTLTKLSSGRRLLEALLILIALFAVWLMAALLSF
                     NPSDPSWSQTAWHEPIHNLGGAPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQS
                     TDDYIDYFAVSLRLIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHS
                     SGGTIMLLCIWAAGLTLFTGWSWVSIAEKLGGWLLNILTFASNRTRRDDTWVDDEEYD
                     DEYDEETDGVQRESRRARILRGALARRKRLAEKFSNPRGRQTDAALFSGKRMDDDEDI
                     QYSARGVAADPDDVLFSGNRATQSEYDEYDPLLNGHSVTEPVAAAAAATAVTQTWAAS
                     ADPIMQTPPMPGAEPVVAQPTVEWQPVPGPQTGEPVIAPAPEGYQPHPQYAQPQEAQS
                     APWQQPVPVASAPQYAATPATAAEYDSLAPQETQPQWQAPDAEQHWQPEPIAAEPSHM
                     PPPVIEQPVATEPEPGIEETRPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEN
                     VPVKPTVSVAPSIPPVEAVAAAASLDTGIKSGALAAGAAAAAPAFSLATGGAPRPQVK
                     EGIGPQLPRPNRVRVPTRRELASYGIKLPSQRIAEEKAREAERNQYETGAQLTDEEID
                     AMHQDELARQFAQSQQHRYGETYQHDTQQAEDDDTAAEAELARQFAASQQQRYSGEQP
                     AGAQPFSLDDLDFSPMKVLVDEGPHEPLFTPGVMPESTPVQQPVAPQPQYQQPVAPQP
                     QYQQPQQPVASQPQYQQPQQPVAPQP"
BASE COUNT         3042 a         3500 c         3631 g         2876 t
ORIGIN      
        1 tacttatcac attttcgaaa gcgaatgcta ttagcatcac actttctacg ttgttatcaa
       61 cgataatgct ttcgtacagg tagcttagct gttggcagtg ctataccccg tccagtcatc
      121 catcagcgcc actcgtttag gccataacgt cccacgctga tacgctgctt cagccttatc
      181 tgccaactgg tgcgccaacg catgttcaat aacctcacgt tgataatccg ttgcttcacc
      241 agcccactca cggaaagtag aacggaagcc atgttgcgtt aagtcgatat atcccattcg
      301 tttcaataca gccaataacg acatatcaga aagtgtttca gcgcgagggg cagggaatac
      361 atgattgtta tcttttaatc gtggtaaatc ttttaacaaa tcaacagcag catcagacag
      421 aggaactcgg tgctttttta ctaccgagag atacttatgc aaacttttct aaagcgtttc
      481 aggtagggaa gtagggctgt tttacacaat ctatagtaag tttggtgtag caaccaaagg
      541 tccaaaaaca aacctttcat caggaaaatc acagtaaaaa caagaagttt agatacaaaa
      601 gcccgtactt tcgtacgagc tctttcttga atatggcggt gaggggggga ttgactcgct
      661 ttgctcgccc cttcggggca gcccgttcgc tgcgcgcccg gtctgtccaa ctggctgcgc
      721 cagttgtcga accccggtcg gtggttctca tccccccttg gtttggggga tacatataag
      781 caaaaagccc gtacttctgt acaggctctc aacttaaata tggcggtgag ggggggattc
      841 gaacccccga tacgttgccg tatacacact ttccaggcgt gctccttcag ccactcggac
      901 acctcaccat attgtattgc tgcctgaccg cttggggggc aacggggcgc tactataggg
      961 agttgcgcta aaacggtcaa gcagaattta catattcact gtcgtttgct catgcaatag
     1021 acataatccc cgcccaaact ggcgcgggga ggcaaattag cgctgtgaat ccaacatttc
     1081 gttgtttttc accacatcct gcgctttgct gtagctttct atcagcagtt gataggccgg
     1141 gaatacctga gtataaacgt cggcccacgc ggctgcgtct tcacggttcc aggtgccttg
     1201 cagctcagag gcaactgcgg cagtatccat cggtacgacg ccagcctgta cgatacgcgc
     1261 cagggtgatc tcctgcgcca tcttactgta ggtaccggat gcgtcgatca cggcaaatac
     1321 cttataacct tctgctaccg cgctaatggc cgggaatgcc atgcacacgc tggtaatcgt
     1381 cccggcaatg atcagcgtct tacgacccgt cgcttttacc gccttaacga aatcttcgtt
     1441 atcccaggcg ttaatttcac ctttgcgcgc aatgtactgt gcatgtggcg cattagcgtg
     1501 gatctccggg atcagcgggc cgttcggacc ttgcggtacg gatgccgtgg taatgaccgg
     1561 cattttcgct aacgtcgcca tcttcgccaa cgccgcggcg cgagcgcgta attccggcat
     1621 tggcatatcg cctacggtct ggaaaagacc gctttgatga tcgattaaaa gcatcacgga
     1681 atcgttaaca tcaattaccg ggcgcaaacc attaaaacta gcaggacttg acatcgtgtt
     1741 ctccttcatg ttttcagatt tggccaaaac ggccggagtt gaaatcgcgg actgcttctg
     1801 cgatctcttg tttcgtgttc ataacaaatg ggccgtaacc cacaatcggt tcattcagcg
     1861 gctcgcctga taacagcaat acgctggcgt cgctgctggc ctcaaggtgc agcgttttcc
     1921 cttgctggct caataccacc agttgcgctt cgttggccgg cgtcgtgccg ttcaccgtga
     1981 tattgccttt cagtaccacc agcgcggcgc tccatccttc cggctgtgcc aatgtaagct
     2041 ggcgattgcg ttgcaggcgc atatcccaga cattgagcgg cgagaaagtg tgcgccgggc
     2101 cttttgtctc ttcataacgc cctgcgatga cccgcacgac tccggcgtca tccggcaacg
     2161 taacggtcgg gataacatcg tgggtaatgc tttgataacc cggggtggtc attttgtcct
     2221 tcatgggaag gttaacccac aactgcatca tttccagttc gccgccccga cgggtaaacg
     2281 cgtcggagtg gaactcttca tgcaaaatgc ctgcgcctgc gctcatccac tgaacgtcgc
     2341 ccgggccgat aacgccgccg cgaccggtag agtcccgatg ctcgacttcg ccactataaa
     2401 caatcgtcac ggtctcgaaa ccgcggtgtg gatgctcccc aacgccgcgt ttttcattac
     2461 ccggcgtaaa ggtgtgcggc ccggcataat ccagcagcag gaatggattc aactgctgcg
     2521 catgtgactg ataagaaaag agtgaacgaa ccggaaatcc atcgccaacc cagtgcgggc
     2581 gaggtgcggt atagacgcct gtaatctgtt tcatggtgtt ctcctcagtg gcgttgtctt
     2641 gatgtgaata agcttatatt catgacaaaa tgttcggtag tgggtaaaat ggctcatacc
     2701 gttccattaa taggacaatg taatgataaa aacggatctc aatgattttg cgtggtttgt
     2761 gcatgtggtc gaagagggtg ggtttgccgc ggcggggcgt gcgcttgatg aaccaaaatc
     2821 aaaactgagc cggcgtattg cgcaactgga ggaacggctg ggcgtgcgat tgattcagcg
     2881 aaccacccgg cagtttaacg ttaccgaagt ggggcaaaca ttctatgagc actgtaaagc
     2941 gatgctggtg gaagctcagg cggcgcagga tgccattgcc gcattgcagg tagagcctcg
     3001 cggtatcgtg aagctaacct gcccggtgac gctgctgcat gtacacatcg gcccaatgct
     3061 ggcgaagttt atggcgcgtt atcctgatgt ttcgctacag cttgaagcga ccaatcgtcg
     3121 ggtggacgtc gtaggggagg gggtggatgt ggcgattcgc gtcaggccgc gcccgtttga
     3181 agatagcgac ctggtgatgc gcgtcctggc tgacagaggg catcgcctgt ttgccagccc
     3241 ggatctcatc gcacggatgg gaatcccttc cgcgccggcg gagttgagcc attggccagg
     3301 gctaagtctt gcatccggca agcatatcca ccgctgggaa ctttacggcc cgcagggcgc
     3361 gcgtgcggaa gtccatttta ccccgcgtat gattactaca gacatgttgg cgctacgcga
     3421 ggcggcgatg gcgggcgtgg ggcttgtgca gttacctgtc ttaatggtga aagaacaact
     3481 ggccgccggt gaactggtcg cggtgctgga agagtgggag ccccggcggg aggttattca
     3541 tgctgtgttc ccatcccggc gagggctatt accttccgta cgtgcgttgg tcgatttttt
     3601 gacggaagag tatgcgcgga tggtggaaga gtaacctgct cgtcattcat cgacttaatg
     3661 gacgcaaaaa aggccggtta aaccgacctt ttatccagcc gcccttcagg gcgtgaggag
     3721 acaattagcg actacggaag acaatgcggc ctttgctcag gtcgtacggg gtcagctcaa
     3781 cggtcacttt gtcgcccgtc aggatgcgga tgtagttctt acgcatttta ccggagatgt
     3841 gtgcagtaac cacgtgaccg ttttctaact ctacgcggaa catggtatta ggtaacgttt
     3901 cgagaacggt accttgcatt tcaatattgt cttctttggc catctaatcc tctggggtat
     3961 cactaccata atttgaaccg gcaagataat gccgaacttc ttttgataag taaagatttg
     4021 tgcgtttaaa acacagcaaa ccaggtttag cacatgattc cgcgacacac gacaacgccg
     4081 cgttatacac cttttccctg atactaccgc ctgatgtatc gacataagcg caacatataa
     4141 gggaacggtg aaataaacga tgggcgttac ctgacaacgg gctgcgtgat aatgagctaa
     4201 accaattctg cggcagcaat tataacaccc caataaaaaa tgtgccgaaa acattcactt
     4261 ccggggcaaa aataatgtcc gcggcaccca aaaacgggag gccagcggct gttggcgtaa
     4321 ggccgcgagg tgatcgaggt agtcacgacg tggaatttca atggcaccga gcgaggcggt
     4381 atgactatta agtacctgac aatcaataag tttaccgccg tggcgggtaa attcagcgca
     4441 aaaaaccagc agtgcggttt tagaggcatt ctcctggcgg ctaaacatcg attcgccgca
     4501 aaatagcgcc ccctgcgaga cgccatacat cccgccgacc agttcccgat cgcgccacac
     4561 ttcaatggag tgcgcgtggc ccaattcatg taatcggcga taggcttcct caataccacg
     4621 cgttatccag gtgccttcgt cacggtgatt ggcgcatcca tcaatgaccc ggtcgaaagc
     4681 gtaattgagc gtcacgcggt aaggggatgc gttgtgaaag cgcttcatgc tgcgactgag
     4741 gtgaaacttt tcaggccaca gcacggcgcg cggatcgggc gaccaccaca gaatcgggtc
     4801 gcccggcgaa aaccacggga aaatcccgtg ctggtaggcc attaacaacc gggcagggct
     4861 gagatcgccg cccagtgcca gtaaaccgtt aggctcgcgt aaagcgcctt ccggcgaagg
     4921 gaaggcgata gaatgtcggg aaagctgaac cagacgcatg acggcgaaac tccagtacgc
     4981 aagtcggatc gttcaataat agcttacaga cgttgtttaa actgataata gcgcccttgt
     5041 ccggctaaca attctgcatg agtgcctcgc tcaatgatgc gcccgtcgtc cattacgatg
     5101 atttgatcaa aacgggccag gccgcgcaaa cggtgagtca ctatcaggac ggttttttcg
     5161 cgcatcacat cggcaagtaa ttccagcatt tcgctctcgg tggtcgcatc cagcccctca
     5221 gtaggctcat ccaacagcat caacggggca tcgtgcaaca gcgcgcgggc gatggccagg
     5281 cgacgaagtt cgccgccgga tagcagacga ccgccttcgc cgagccagct attaagccca
     5341 ctatcttcga gcagattttc gaggccgacg cgacgcagca tgtcggaaag ggcttcgtcg
     5401 ctggcattgg gcgccgccag taataaatta tcacgcagcg tggcgctgaa caggtggaca
     5461 cgctgcggca ccacgctgat agtccggcgt aaggcggatt cgctcagcga ggatagcgga
     5521 agatcgttga gcagaatttc gccttgttgc gggtcccagg cgcgggtgag tagctgcaac
     5581 agcgttgatt ttccgcagcc ggtacgcccc agaatagcga catgctcgcc aggattagcc
     5641 tgtaatgaga gggcattgag cgcattaatc ggctggtcgg gataacgaaa cgaaacgtcc
     5701 cgcagggtga gtgtgacctt ttccggcgcg ggagtttctg cctgtggaaa ggtcacctcc
     5761 ggtttttgct ccgttaattc agtgatacga agcgcagagg cgataacctg ccccagatgt
     5821 tggaatgcgc cggtaacggg cgcaagcgcc tcgaaagccg ccagcgcgca gaagacaaac
     5881 agcgcgatga gcgcgccggg ctgcatattg ccgccaacgc cgccggaggc catccacaac
     5941 attaacatca ccgccagcgc gccaatcagc agcattaacg cctgcgataa ggcggtgagt
     6001 tcagactgtc ggcgttgggc ctcatgccat tgtaattcgg tggcttccat ttgcgcccga
     6061 tagcgtttgc tggcgccaaa aatggtgagt tccgcctggc cctgtaacca tgacgtgagc
     6121 tgctggcgat actgaccgcg tagatgcgtc agattttggc tggtattttt gccggcgcga
     6181 taaaacaccg gcggcataat aaacagcgtc aacagcataa tgccgcccag cgtgatcgcc
     6241 agcgtcacgt cgagaacgct aagccccagg gtgacaatca taatcactac aaaagcaccg
     6301 accagcgggg agatgacgcg caaatagaga tgatccagcg tgtcgacgtc ggcaacgatg
     6361 cggttcagca gttcaccttg ctgatatcgc gccagacccg cgggggagag cggtagaagt
     6421 ttgctgaagg tataaatacg cagatgttgc agcacgcgga acgtggcgtc atgacttacc
     6481 agacgttcaa aataacgacc agcggtacgg gtaatggccg cgccgcgcac gccggccgcc
     6541 gggagcatat agttaaaact gtaaattccc gcgaagcctg cgatagcgga cgcggacagg
     6601 aaccagccgg aaagcgtcag cagcccgata ctggcaagca gggtcaggat tgccagcgca
     6661 attcccagcg ttagcatcca tttgtggcgt ttataaagcg tcagataagg gagtagcgcg
     6721 cgcatttaaa tatcctcctg acggtgagcc aataacgtcg caaaagcgcc gttggcggcg
     6781 ctgagttcgg catagctgcc ttgttcgaca atcgcgccat cttgcataac ccagatagcg
     6841 tcccagtcgg cgagatcttc caactgatgc gtcaccatta atgtggtctg gcgttttgac
     6901 gccgctttta atgcctgcat gacgcgttgc tcgctgtgag cgtccaggct tgccgccggt
     6961 tcatccagca gtagcagttg agagggatta agtagcgcgc gggcgaccgc tacacgctgt
     7021 gcctggccga cggaaagtct gctggcatga ttgccgagcg gggtgtctac tccctgcggc
     7081 agcagcggta aaaattcgct tacccatgcg gcgtcaagcg cggcataaag ttcctgctcg
     7141 ctggcgtccg ggcgcgccag taatacattt tcgcgtagcg tcgccgcagg taattgcggg
     7201 ttttgtccga cccaggagag atgctggcgc caggattccg gcgagagatc gcgaagttcg
     7261 acaccattaa tacgcaaaga tccctgatag gagagaaaac cggataatac attcaacaga
     7321 gagcttttac cggaaccgct gcgtcctacc aggacggcgc gttctcctgc cgctaatgag
     7381 aaattcagcg gcccggcaag cgttttgcct tctggcgagg tgataataag attgactgcg
     7441 tcaatggtta caggttcgtt ttccgccagc tcaacttcgc cgcgcgccgg gtgggcaagg
     7501 ggtgtttcca gaaatgtctt cagactatcc gccgcgccaa ccgcctgcgc cttagcatga
     7561 taaaacgtgc cgaggtcgcg taatggctgg aaaaactccg gcgcgaggat caaggcgagg
     7621 aacccggcgg cgagcgtcac accggtaccg taatgaccaa agttcagctc gcccaggtaa
     7681 gagaagccaa aataaacggc gaccagcgca atagaaagcg aggtgaaaaa ttccagcacg
     7741 ccggaagata aaaaggcgag gcgcagtact tccatcgtgc gctgacgaaa atcctgcgat
     7801 gctgcgcgaa tgctctcggt ttccgcttct ccacgaccga aaattcgcag cgtttccatc
     7861 ccgcgcagac ggtcaagaaa atggccgctt agccgggcaa gcgccaggaa attgcggcgg
     7921 ttggcgtcag ccgcgcccat ccccaccatc gccataaata ggggaatgag cggggcagtg
     7981 cccagcagaa tcagcgccgc cgcccagttt gacgggaaaa tcgccgccac gattaagagc
     8041 ggtacgcaaa cggcaagcgc catttgcggc agatagcgcg cataatagtc atgcatatcg
     8101 tcaatctgct ccaacaccag cgtcgcccag ctaccggcgg gcttgccctg aatccaggct
     8161 gggccggctt gctgcagacg atccaacacc tgacggcgga tctcaaagcg aatatgctgt
     8221 ccggcatgaa aaccgacgcg ctcgcgcaac cacaccaccc aggcgcggag gacaaagatc
     8281 agtatcagca ggataaaagg gagcaacagc gcttcccgtg gaatgttctc catgatcata
     8341 tgttgcagga tacgcgccat gatccaggcc tgagcgacaa ttaatacgcc actcatgaac
     8401 cccaacaggc gggaaatatt caaccaccgt tgggagatta cgctttgctg ttttaaccag
     8461 cgggtcagct ctttttgacg ggttttattc attgcacgct tagcaggtga gttattggaa
     8521 tttcaggcag ggcaatgtta caacgacgca aaaataaagg cgacttatag tcgccttttt
     8581 tacttttgtt actgatttgt aaaaactatt tgctcgcgtc ggccagacca tcgagatagc
     8641 gttcggcatc cagcgccgcc atacagcccg tacctgcaga ggtgatcgcc tgacggtaaa
     8701 tatgatccat aacgtcaccc gccgcgaata cgccagggat gctggtttgt gtggcgttgc
     8761 catgggtgcc ggactgaact ttgatataac cattttccag ctcaagctgg ccttcgaaga
     8821 gtgccgtgtt tgggctatga ccgatggcta cgaaaagtcc ggcgatgtcc agcgtctcga
     8881 tattatcgct ctgctgcgtg tcgcgaagac gcagaccagt aacgcccatc tgatcgccgg
     8941 tcacttcttc cagcgtccgg ttggtgtgca ggatgatatt gccattttcg actttatcca
     9001 tcaggcgctt aatgaggatt ttttcagcgc ggaaaccgtc acggcgatgg ataaggtgca
     9061 cttccgaagc gatgttggac agataaagcg cttcttcaac tgcggtgttg ccgccgccga
     9121 tcaccgccac tttctgattg cggtagaaga aaccgtcgca ggttgcgcag gcggaaacgc
     9181 cgcgcccttt aaaggcttct tccgatggca gccccagata gcgcgcggaa gcgccggtcg
     9241 caatgatcaa cgcatcacaa gtgtactctg cgctgtcacc tgtcagacgg aacggacgat
     9301 tttgcagatc cacgttgttg atgtgatcaa aaattatctc ggtttcaaat tttgccgcat
     9361 gttcatgcat gcgttccatc agcagcgggc cggtcaaatc gtttggatcg ccgggccagt
     9421 tttccacttc cgtcgtggta gtcagttgac cgcctttttc cataccggta ataagtactg
     9481 gctgtaaatt tgcgcgcgcg gcatacaccg ccgcggtata tcccgccggt cctgagccca
     9541 gaataagcag cttactgtgt ttggtcgtgc ccatgagatc cccatagttg ttggcagaca
     9601 atgagcagaa ttgtagagaa tttacagacg taaaaaaaga gcataacgat tttgttaaca
     9661 atatgtgtaa tagcatgaac cgatgaacga ccgcggcagc gacgttatca tcacaaactt
     9721 taattaaaat cggtaactta taaggtgacg aaatgacagt ttaccgccct ctctaatgaa
     9781 taactggcat gttgtactaa aaatcgatgt tttgctttga caatcacctg ctgttttgcg
     9841 aaaacattcg aggaagaaaa aaactgtgtt atgtatgtgc tgcataatca tgcatgtaaa
     9901 taccatgttt accgggctag tgaaatctac gcatggcgtg gacagacgcc attcgtgatg
     9961 tcgatagctg ccgcgaggca acggtcttct caccatagac caggcattgc acgccgttaa
    10021 tccctctggg tttcggtcta ttgtgatggg cagcgactct gaacagtgat gtgagtagag
    10081 tcaggcagga gtagggaagg aatacagaga gacaataata atggtagata gcaagaagcg
    10141 ccctggcaaa gatctcgacc gtatcgatcg taacattctt aatgaactgc aaaaggatgg
    10201 gcgtatttcc aacgtcgagc tttctaaacg agtaggactt tcgccgacac cttgccttga
    10261 gcgtgtgcgt cggctggagc gacaggggtt tatccagggc tatacggcgc tgttgaaccc
    10321 gcattatctg gatgcgtcac ttctggtatt cgttgagatt accttaaatc gcggcgcgcc
    10381 ggatgtgttt gaacagttta atgccgccgt gaaaaagctt gaagagattc aggagtgtca
    10441 tttggtttcc ggcgatttcg actacctgtt gaaaacccgt gtaccggata tgtcagcgta
    10501 tcgaaaacta ttgggagaga cgttgctgcg cttgccaggt gtgaacgaca cccgaactta
    10561 cgtagtgatg gaagaggtaa aacagagtaa tcgtctggtt attaagacac gctaacacgg
    10621 aacaggtgca aaatcgccgt agtttgatta cactcctgtt aatccataca gcaacagtgc
    10681 cggggcaacc cggtgctgtt gtccgtttta gcatcgggcg ggaaaagcct ggaacctgga
    10741 gagccttttt tgagccagga atatactgaa gacaaagacg tcacattgac gaagttaagc
    10801 agcgggcgcc gacttctgga agcgttgttg atacttattg ccctttttgc cgtctggttg
    10861 atggcggcct tgttgagctt taacccttcg gaccccagtt ggtcgcaaac cgcctggcat
    10921 gaacccatcc ataatttagg cggcgcgccg ggcgcgtggc tggccgatac actgttcttt
    10981 atttttggcg taatggccta cactatccct gtcattattg tcggcgggtg ttggtttgcg
    11041 tggcgtcatc agtctacgga tgattacatc gactattttg ctgtgtcgct acgccttatt
    11101 ggcgtgctgg cgctgattct cacttcctgc ggtctggcgg ccattaatgc cgacgatatc
    11161 tggtatttcg cctccggcgg cgtaattggc agcctgttaa gcaccacgct gcagccgttg
    11221 ttgcatagta gcggcggaac gataatgctt ctctgtattt gggctgccgg gctgacgctc
    11281 tttaccggct ggtcctgggt tagtatcgcc gaaaaattag gcggctggct gcttaatata
    11341 ctgaccttcg ccagcaaccg tacccggcgt gatgatacgt gggttgacga cgaagagtat
    11401 gatgacgaat acgatgaaga aaccgatggc gtgcagcgtg aatctcgccg ggcgcgtatt
    11461 ttgcgcggcg cgttggcgcg tcgtaagcga ctggctgaaa aattcagcaa tccacggggc
    11521 cgtcagaccg atgccgcgct cttttccggc aaacggatgg atgatgacga ggacattcag
    11581 tatagcgcgc gcggcgtcgc tgccgatccc gacgacgttc tgttttcggg caaccgtgcg
    11641 acgcagtcgg aatatgatga atatgatccg ctgttaaacg gccattctgt caccgaaccg
    11701 gtcgccgccg ctgcggccgc aactgccgtc acccagacgt gggcagcgtc cgccgatccc
    11761 ataatgcaaa cgccgcccat gccgggggct gagccggttg tcgcgcaacc gaccgtggag
    11821 tggcagcccg taccggggcc gcaaaccggc gaaccggtta tcgcgcctgc gccggagggg
    11881 tatcagccgc atccgcaata tgctcaaccg caggaggcgc aaagtgcgcc gtggcagcaa
    11941 cctgtgcctg tcgcttccgc gccgcaatac gccgcgacgc cagcgaccgc agcagaatat
    12001 gactctcttg cgccgcagga aacacagccg caatggcagg cgccggatgc cgaacaacac
    12061 tggcagccgg agccgatagc ggctgaacct tcccacatgc cgccgccggt tatcgaacag
    12121 ccggttgcca ccgagcctga acctggcata gaagagacca ggcccgctcg ccctccgctt
    12181 tactattttg aagaggtgga agagaaacgc gcccgtgagc gcgaacaact ggcggcatgg
    12241 tatcaaccga ttccggagcc ggtaaaagag aacgtgccgg tcaaacctac ggtatctgtc
    12301 gcgccgtcca taccgccagt ggaagcggta gccgccgccg cgtcgcttga cacaggtatt
    12361 aagagtggcg ccctggcagc aggcgccgcg gccgctgcgc ctgcatttag tctggctacc
    12421 ggcggcgcgc cgcgtccgca ggtgaaagag gggattggtc cgcaactgcc gcgtccgaac
    12481 cgcgttcgcg tgccgacccg acgggaactg gcatcgtacg gtattaagct gccgtcacag
    12541 aggattgctg aagaaaaagc ccgcgaggcg gagcgcaatc agtacgagac gggcgcgcag
    12601 ctaaccgatg aagaaataga tgcaatgcat caggacgagt tagcccgtca gtttgcgcag
    12661 tcgcagcagc atcgttatgg tgagacgtat cagcatgata ctcaacaggc agaagatgac
    12721 gataccgctg cggaagctga attagcccgc cagtttgccg cttcgcaaca gcagcgctat
    12781 tccggcgagc aacccgctgg cgcgcagccg ttctcactgg acgatctgga tttctcgcca
    12841 atgaaagtat tggttgatga aggtccgcac gaaccgctgt tcacgccggg tgtcatgccc
    12901 gagtcaacgc ctgttcagca acctgtagcg ccgcagccgc agtatcagca gccggtagcg
    12961 ccgcagccac agtatcagca gccgcagcag ccggtagcgt cgcagccaca gtatcagcag
    13021 ccgcaacagc cggtagcgcc tcagccgca
//
LOCUS       DAJVSD010000115        13009 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.115, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000115 DAJVSD010000000
VERSION     DAJVSD010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 13009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13009
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.115"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..372
                     /gene="tuf"
                     /locus_tag="OQP62_002637"
     CDS             <1..372
                     /gene="tuf"
                     /locus_tag="OQP62_002637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="EF-Tu; promotes GTP-dependent binding of
                     aminoacyl-tRNA to the A-site of ribosomes during protein
                     biosynthesis; when the tRNA anticodon matches the mRNA
                     codon, GTP hydrolysis results; the inactive EF-Tu-GDP
                     leaves the ribosome and release of GDP is promoted by
                     elongation factor Ts; many prokaryotes have two copies of
                     the gene encoding EF-Tu; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HCS1722155.1"
                     /translation="GENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKD
                     EGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGL
                     RFAIREGGRTVGAGVVAKVLG"
     gene            602..985
                     /gene="secE"
                     /locus_tag="OQP62_002638"
     CDS             602..985
                     /gene="secE"
                     /locus_tag="OQP62_002638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007665874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HCS1722156.1"
                     /translation="MSANTEAQGSGRGLEAMKWIVVAILLIVAIVGNYLYRDMMLPLR
                     ALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTA
                     VMSLILWGLDGILVRLVSFITGLRF"
     gene            987..1532
                     /gene="nusG"
                     /locus_tag="OQP62_002639"
     CDS             987..1532
                     /gene="nusG"
                     /locus_tag="OQP62_002639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005280494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HCS1722157.1"
                     /translation="MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMV
                     PTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAP
                     ISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV
                     SVSIFGRATPVELDFSQVEKA"
     gene            1690..2118
                     /gene="rplK"
                     /locus_tag="OQP62_002640"
     CDS             1690..2118
                     /gene="rplK"
                     /locus_tag="OQP62_002640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HCS1722158.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     KTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKIS
                     RAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED"
     gene            2122..2826
                     /gene="rplA"
                     /locus_tag="OQP62_002641"
     CDS             2122..2826
                     /gene="rplA"
                     /locus_tag="OQP62_002641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HCS1722159.1"
                     /translation="MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDV
                     AVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLAD
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
                     VRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPSQAKGVYIKKVSISTTM
                     GAGVAVDQAGLSASAN"
     gene            3242..3739
                     /gene="rplJ"
                     /locus_tag="OQP62_002642"
     CDS             3242..3739
                     /gene="rplJ"
                     /locus_tag="OQP62_002642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002438625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HCS1722160.1"
                     /translation="MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKA
                     GREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKA
                     NAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRD
                     AKEAA"
     gene            3806..4171
                     /gene="rplL"
                     /locus_tag="OQP62_002643"
     CDS             3806..4171
                     /gene="rplL"
                     /locus_tag="OQP62_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HCS1722161.1"
                     /translation="MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAG
                     PAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKD
                     DAEALKKSLEEAGAEVEVK"
     gene            4489..8517
                     /gene="rpoB"
                     /locus_tag="OQP62_002644"
     CDS             4489..8517
                     /gene="rpoB"
                     /locus_tag="OQP62_002644"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004870488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HCS1722162.1"
                     /translation="MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE
                     GQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRL
                     VIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE
                     QILDLFFEKVVFEIRDNKLQMELIPERLRGETASFDIEANGKVYVEKGRRITARHIRQ
                     LEKDDIKHIEVPVEYIAGKVVSKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIE
                     TLFTNDLDHGPYISETVRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE
                     DRYDLSAVGRMKFNRSLLRDEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN
                     RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG
                     PNIGLINSLSVYAQTNEYGFLETPYRRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLD
                     DEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGTVQYVDASRIVIKVNEDE
                     MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ
                     NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN
                     VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF
                     SRIRAVLVSGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE
                     AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD
                     ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ
                     RAYDLGADVRQKVDLSTFSDDEVLRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL
                     PTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK
                     AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
                     ESFNVLLKEIRSLGINIELEDE"
     gene            8594..12817
                     /gene="rpoC"
                     /locus_tag="OQP62_002645"
     CDS             8594..12817
                     /gene="rpoC"
                     /locus_tag="OQP62_002645"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HCS1722163.1"
                     /translation="MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETI
                     NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERM
                     GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQIL
                     TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECETLREELNETNSETKRKKLT
                     KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN
                     NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK
                     QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT
                     TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
                     PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL
                     GLYYMTRDCVNAKGEGMVLTGPKEAERIYRAGLASLHARVKVRITEYEKDENGEFVAH
                     TSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQT
                     MYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKV
                     IDIWAAANDRVSKAMMDNLQTETVINRDGQEEQQVSFNSIYMMADSGARGSAAQIRQL
                     AGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR
                     RLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI
                     LVPRNTLLHEQWCDLLEANSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA
                     IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK
                     LVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANWDPHTMPVITE
                     VSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKIVDAQGNDV
                     LIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE
                     ARRPKEPAILAEIAGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
                     ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR
                     KATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGATFSRDLLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEQ
                     PATPQVTAEDASASLAELLNAGLGGSDNE"
BASE COUNT         3160 a         3273 c         3616 g         2960 t
ORIGIN      
        1 ggtgagaacg taggtgttct gctgcgtggt atcaaacgtg aagaaatcga acgtggtcag
       61 gtactggcta agccgggcac catcaagccg cacactaagt tcgaatctga agtgtacatt
      121 ctgtccaaag atgaaggcgg ccgtcatact ccgttcttca aaggctaccg tccgcagttc
      181 tacttccgta ctactgacgt gactggtacc atcgaactgc cggaaggcgt agagatggta
      241 atgccgggcg acaatatcaa aatggttgtt accctgatcc acccgatcgc aatggacgac
      301 ggtctgcgtt tcgcaatccg tgaaggcggc cgtactgttg gcgcgggcgt tgttgctaaa
      361 gttctcggct aatcgctgat aacatttgac gcaatgcgca ataaaagggc atcatttgat
      421 gccctttttg cacgctttca caccagaacc tggctcatca gtgattttat ttgtcataat
      481 cattgctgag acaggctctg tagagggcgt ataatccgaa aggcgaataa gcgtttcgat
      541 ttggtttgcc tcgcgattgc ggggtgaaaa tgtttgtaga atacttctga caggttggtt
      601 tatgagtgcg aataccgaag ctcaagggag cgggcgcggc ctggaagcga tgaagtggat
      661 agttgttgcc atattgctga tcgtcgcaat cgtcggcaac tacctctatc gcgacatgat
      721 gctgccgctg cgtgcgctgg ccgtagtaat tctgattgct gcagcgggtg gtgtcgcgct
      781 gttgacgaca aaaggtaaag caaccgttgc ttttgcccgt gaagcgagaa ccgaagtccg
      841 taaggtcatt tggccgactc gccaggaaac gctgcacacc acgctgatcg tcgctgcggt
      901 taccgcagtt atgtcactga tcctgtgggg actggatggt attctggttc gcctggtatc
      961 ctttatcact ggcctgaggt tctgagatgt ctgaagcacc taaaaagcgc tggtacgtcg
     1021 ttcaggcgtt ttccggtttt gaaggccgcg tagccacatc gctgcgcgag catatcaaat
     1081 tacacaatat ggaagagctg tttggcgaag tcatggtgcc gactgaagaa gtcgttgaga
     1141 tccgtggcgg ccagcgtcgc aaaagcgaac gcaaattctt cccgggttac gttctggtcc
     1201 agatggtcat gaacgacgca agctggcacc tggtgcgcag cgtgccgcgt gtgatgggct
     1261 ttatcggcgg tacctctgac cgtccggcgc cgatcagcga caaagaagtc gatgcgatca
     1321 tgaaccgcct gcagcaggtt ggcgataagc cgcggccgaa aacgttgttt gaaccgggtg
     1381 aaatggttcg tgttaacgac ggtccgttcg cagactttaa cggcgttgtc gaagaagtcg
     1441 attatgagaa gtctcgcctg aaagtgtctg tttctatctt cggtcgtgcg accccggtag
     1501 agctggactt cagccaggtt gagaaagcgt aaggctgcga tcaaaaaagc agcgatctaa
     1561 tcgttgcata gggcgcaaaa ttgacataca atttcgcgcc ttttgttttt atgggcctta
     1621 tgcccataaa gcgatattta tcacggggag cttctttgaa gcgatactac ccaattcgag
     1681 gaatttagaa tggctaagaa agtacaagcc tatgtcaagc tgcaggttgc agctggtatg
     1741 gcgaacccga gtccgccggt tggtccagca ctgggtcagc agggtgtgaa catcatggaa
     1801 ttctgcaaag cgttcaacgc aaaaacggat tccatcgaaa aaggtctgcc gattccggtt
     1861 gttattaccg tttacgctga ccgttctttc accttcgtta ccaaaacgcc tccggcagct
     1921 gttctgctga aaaaagcggc tggtatcaag tctggttccg gcaagccgaa caaagacaaa
     1981 gtaggtaaaa tttcccgcgc tcagctgcag gaaatcgcgc agaccaaagc tgccgacatg
     2041 accggtgccg acattgaagc gatgactcgc tccatcgaag gtactgcacg ttccatgggc
     2101 ctggtagtgg aggactaaga aatggctaaa ctgaccaagc gtatgcgcgt gatccgtgaa
     2161 aaagttgatg cgaccaaaca gtacgacatc aacgaagcta ttgccctgtt gaaagagctg
     2221 gccactgcta aattcaacga aagcgttgac gttgccgtta acctcggcat cgacgctcgt
     2281 aaatctgacc agaacgttcg tggcgcgact gtactgccgc acggtactgg ccgttctgtt
     2341 cgcgttgccg tatttaccca gggcccgaac gctgaagcag ctaaagctgc tggcgctgag
     2401 ctggtaggta tggaagatct ggctgaccag atcaagaaag gcgaaatgaa cttcgacgtt
     2461 gttatcgcat ccccggatgc aatgcgcgtt gttggccagc tgggccaggt tctgggtccg
     2521 cgcggcctga tgccaaaccc gaaagtcggt accgtaacgc cgaacgttgc tgaagcggtt
     2581 aagaacgcta aagcaggtca ggttcgttac cgtaacgaca aaaacggcat catccacacc
     2641 accatcggta aagtggactt tgacgctgac aaactgaaag aaaacctgga agctctgctg
     2701 gttgcgctga aaaaagcaaa accgagccag gcgaaaggcg tgtacatcaa gaaagttagc
     2761 atctccacca ccatgggtgc tggcgttgcc gttgatcagg ctggtctgag cgcatctgcg
     2821 aactaagatt agtctttacg tgggcggtga ttttgtctac aatcttaccc ccacgtattc
     2881 tgctagttgc agacgtatat ccgaggtatt cgggttgtga caaggcggca acttagtgag
     2941 tcgccaggag catagttaac tatgtgactg gtgcgaacga aggaagccaa cgccgtcaca
     3001 agctgaatag cgacggatag aaaagatttg ttcgttggag cctggcctat ccaggcctcc
     3061 gtcgaagacc gcaggcgtct cgcaagaggc ttaatcccct gcgtagacgg tgacagaacg
     3121 ctaagattat ttttgatact ctggcttgtt tctgctcacc gtattaagac gctcttctcg
     3181 ttgagatgag tgaagtgagt tccggaacat gagttccggc aaacatccag gagcaaagct
     3241 aatggcttta aatcttcaag acaaacaagc gattgttgct gaagtcagcg aagtagccaa
     3301 aggcgcgctg tctgcagtag ttgcggattc ccgtggcgta actgtagata aaatgactga
     3361 actgcgtaaa gcaggtcgtg aagctggcgt atacatgcgt gttgttcgta acaccctgct
     3421 gcgccgcgtc gttgaaggta ctcagttcga gtgcctgaaa gacacgtttg ttggtccgac
     3481 cctgattgca tactctatgg aacacccggg cgctgctgct cgtctgttca aagagttcgc
     3541 gaaagcgaat gcaaaatttg aggtcaaagc tgcagccttt gaaggtgagc tgatcccggc
     3601 gtctcagatc gaccgcctgg caactctgcc gacctacgaa gaagcaattg cacgcctgat
     3661 ggcaaccatg aaagaagctt cggctggcaa actggttcgc acactggctg ctgtacgcga
     3721 tgcaaaagaa gctgcgtaat cgcagttgtc tttatcaagc atttgcttac gtataaactt
     3781 attctgatat tcaggaacaa tttaaatgtc tatcactaaa gatcaaatca ttgaagcagt
     3841 atccgctatg tccgtaatgg acgttgtaga actgatttct gcaatggaag aaaaattcgg
     3901 tgtttccgct gctgctgctg tagctgtagc tgctggcccg gctgaagctg ctgaagaaaa
     3961 aactgaattc gacgtaattc tgaaagctgc tggcgctaac aaagttgctg ttatcaaagc
     4021 agtacgtggc gcaactggcc tgggtctgaa agaagctaaa gacctggtag aatctgctcc
     4081 ggccgctctg aaagaaggcg tgagcaaaga tgacgctgaa gcactgaaaa aatctctgga
     4141 agaagctggc gctgaagttg aagttaaata agccaaccct tccggttgca gcctgagaaa
     4201 tcaggctgat ggctggtgac tttttagtca ccagcctttt tgcgctgtaa ggcgccagta
     4261 gcgtttcaca ctgtttgact actgctgtgc ctttcaatgc ttgtttctat cgacgactta
     4321 atatactgcg acagagcgta cgttctgtgt aaatcgcaat gaaatggttt aagcgtgata
     4381 gcaacaggca ttgcggaaag tatccatttt ccggtcaaca aaatagtgtt gcacaaactg
     4441 tcccccgcag gacagatggg tcgacttgtc agcgagctga ggaaccctat ggtttactcc
     4501 tataccgaga aaaaacgtat tcgtaaggat tttggtaaac gtccacaagt tctggatgta
     4561 ccttatctcc tttctatcca gcttgactcg tttcagaagt ttatcgagca agatcctgaa
     4621 gggcagtacg gcctggaagc agccttccgt tccgtgttcc cgattcagag ctacagcggt
     4681 aattccgagc tgcagtacgt cagctaccgc cttggcgaac cggtgtttga cgttcaggaa
     4741 tgtcagatcc gtggcgtgac ctattccgca ccgctgcgcg taaaactgcg tctggtgatc
     4801 tacgagcgcg aagcgccgga aggcaccgtt aaagacatta aagaacaaga agtctacatg
     4861 ggcgaaattc cgctcatgac cgacaacggt acctttgtta tcaacggtac tgagcgtgtt
     4921 atcgtttctc agctgcaccg tagtccgggc gtcttctttg actccgacaa aggtaaaact
     4981 cactcttcgg gtaaagtgct gtataacgcg cgcatcattc cttaccgtgg ttcctggctg
     5041 gacttcgaat tcgatccgaa ggacaacctg ttcgtgcgta tcgaccgtcg ccgtaaactg
     5101 cctgcgacca tcatcctgcg tgcgctgaac tacaccactg agcagatcct tgacctgttc
     5161 tttgagaaag tcgtcttcga aattcgcgac aacaagctgc agatggagct gattccagaa
     5221 cgtctgcgcg gcgaaaccgc gtcgttcgat atcgaagcta acggcaaggt gtacgttgaa
     5281 aaaggccgtc gcattaccgc gcgtcatatc cgtcagctgg aaaaagacga tatcaagcat
     5341 atcgaagttc cggttgagta catcgcaggt aaagtcgtct ctaaagacta cgttgacgaa
     5401 tctactggcg agctgatctg cgcggcgaac atggagctga gcctggatct gctggctaag
     5461 ctgagccagt ccggccacaa gcgtatcgaa acgctgttta ccaacgatct ggaccacggc
     5521 ccgtacattt ctgaaacggt acgcgtcgat ccaactaacg atcgtctgag cgcgctggta
     5581 gaaatctacc gcatgatgcg ccctggtgag ccgccgacac gcgaagcggc tgaaagcctg
     5641 tttgagaacc tgttcttctc cgaagaccgc tatgacctgt ctgcggtggg tcgtatgaag
     5701 ttcaaccgtt ctctgctgcg cgacgaaatc gaaggttccg gtatcctgag caaagacgac
     5761 atcattgatg tcatgaagaa gctcatcgat atccgtaacg gtaaaggcga agtggatgat
     5821 atcgaccacc tcggcaaccg tcgtatccgt tccgtcggcg aaatggcgga aaaccagttc
     5881 cgcgttggcc tggtgcgtgt agagcgtgcg gtgaaagagc gtctgtctct gggcgatctg
     5941 gataccctga tgcctcagga tatgatcaac gccaagccga tttccgccgc agtgaaagag
     6001 ttctttggtt ccagccagct gtctcagttt atggaccaga acaacccgct gtctgagatt
     6061 acgcacaaac gtcgtatctc cgcactcggc ccaggcggtc tgacccgcga acgcgcaggc
     6121 ttcgaagttc gagacgtaca cccgacgcac tacggtcgcg tatgtcctat cgaaacgccg
     6181 gaaggtccga acatcggtct gatcaactcc ctgtccgtgt acgcacagac taacgaatat
     6241 ggcttccttg agacgccgta ccgtcgtgtg gttgatggcg tggttactga cgaaattcat
     6301 tacctgtctg ctatcgaaga aggcaactac gttatcgctc aggcgaactc caacctggat
     6361 gacgaaggcc actttgtaga agatctggta acctgccgta gcaaaggcga atccagcttg
     6421 ttcagccgcg accaggttga ctacatggac gtttccaccc agcaggtggt ctccgtcggt
     6481 gcgtccctga tcccgttcct ggaacacgat gacgccaacc gtgcattgat gggtgcgaac
     6541 atgcaacgtc aggcggttcc gactctgcgt gctgataagc cgctggtggg taccggtatg
     6601 gaacgtgctg tcgccgtcga ctccggtgtt actgcagtag ctaaacgtgg cggtactgtt
     6661 cagtacgtgg atgcatcccg tatcgttatc aaagttaacg aagacgagat gtacccgggt
     6721 gaagcaggta tcgacatcta taacctgacc aaatacaccc gctctaacca gaacacctgt
     6781 atcaaccaga tgccatgtgt gtctctgggc gagccggttg aacgcggcga cgtgctggca
     6841 gacggtccgt ccaccgacct cggtgaactg gcgctcggtc agaacatgcg cgtggcgttc
     6901 atgccgtgga acggctacaa cttcgaagac tccatcctcg tttccgagcg tgttgtccag
     6961 gaagaccgtt tcaccaccat ccacattcag gaactggcgt gcgtgtcccg tgacaccaag
     7021 ctggggccgg aagagatcac cgctgacatc ccgaacgtgg gtgaagctgc gctctccaaa
     7081 ctggatgaat ccggtatcgt ttacatcggc gcggaagtga ctggcggcga cattctggtc
     7141 ggtaaggtaa cgccgaaagg tgaaacccag ctgacgccgg aagagaaact gctgcgtgcg
     7201 atcttcggtg agaaagcgtc tgacgttaaa gactcttctc tgcgcgtacc taacggtgtc
     7261 tccggtacgg ttatcgacgt tcaggtcttt actcgcgatg gcgtagaaaa agacaaacgt
     7321 gctctggaaa tcgaagagat gcagctcaag caggcgaaaa aagacctgtc tgaagaactg
     7381 cagatcctcg aagcgggcct gtttagccgt atccgtgcgg tgttggtgtc cggcggcgtt
     7441 gaagctgaga agctcgacaa actgccgcgc gaccgctggc tggaactcgg tctgaccgac
     7501 gaagagaaac aaaatcagct ggaacaactg gctgagcagt atgacgaact gaaacacgag
     7561 ttcgagaaaa aacttgaagc gaagcgccgt aaaatcaccc agggcgacga tctggcgccg
     7621 ggcgtgctga agatcgtgaa ggtctatctg gccgttaaac gccgtatcca gccgggtgat
     7681 aagatggcag gtcgtcacgg taacaagggt gttatctcta agatcaaccc gatcgaagac
     7741 atgccttacg atgaaaacgg cacgccggta gacatcgtac tgaacccgct gggcgtaccg
     7801 tctcgtatga acatcggtca gattctggaa acccacctgg gtatggctgc gaaaggtatt
     7861 ggcgacaaga ttaacgccat gctgaaacag cagcaggaag tcgcgaaact gcgcgaattc
     7921 atccagcgtg cctacgatct gggcgccgac gttcgtcaga aagtcgacct gagcaccttc
     7981 agcgatgatg aagtgctgcg tctggcagaa aacctgcgca aaggtatgcc gattgccaca
     8041 ccagtgttcg acggtgcgaa agaagcggaa atcaaagagc tgctgaaact gggcgacctg
     8101 ccgacctccg gtcagatcac cttgttcgat ggccgtacgg gtgaacagtt cgaacgtccg
     8161 gtaaccgtcg gttacatgta catgctgaaa ctgaaccacc tggttgatga caagatgcat
     8221 gcgcgttcta ccggttctta cagcctggtt actcagcagc cgctgggtgg taaggcgcag
     8281 ttcggtggtc agcgcttcgg ggagatggaa gtgtgggcgc tggaagctta cggcgccgcc
     8341 tacaccctgc aggaaatgct caccgttaag tctgatgacg tgaacggtcg taccaagatg
     8401 tataagaaca tcgtggacgg caaccatcag atggaaccgg gtatgccgga atccttcaac
     8461 gttctgttga aagagatccg ctcgctgggc atcaacatcg aactggaaga cgagtaattc
     8521 tcgctcaaac aggtcactgg tgtcggggta aaacccgaca ccagattgtg ctaactccga
     8581 cgggagcaaa tccgtgaaag atttattaaa gtttctgaaa gcgcagacta aaaccgaaga
     8641 gtttgatgcg atcaaaattg ctctggcttc gccagacatg atccgttcat ggtctttcgg
     8701 tgaagttaaa aagccggaaa ccatcaacta ccgtacgttc aaacctgagc gtgacggcct
     8761 tttctgcgcc cgtatctttg ggccggtaaa agactacgag tgcctgtgcg gtaagtacaa
     8821 gcgcctgaaa caccgtggtg ttatttgtga gaagtgcggc gttgaagtga cccagaccaa
     8881 agtacgccgt gagcgtatgg gccacatcga gctggcgtct ccgactgctc acatctggtt
     8941 cctgaaatcg ctgccgtccc gtatcggtct gctgctcgat atgccgttgc gtgatatcga
     9001 acgcgtactg tacttcgaat cttatgtggt tatcgaaggc ggtatgacca acctggaacg
     9061 tcaacagatc ctgactgaag agcagtatct ggacgcgctg gaagagttcg gtgacgaatt
     9121 cgacgcgaag atgggtgcgg aagctatcca ggccctgctg aagagcatgg atctggagca
     9181 agagtgtgaa actctgcgcg aagagctgaa cgaaaccaac tccgaaacta agcgtaaaaa
     9241 gctgaccaag cgtatcaaac tgctggaagc cttcgtacag tctggcaaca agccagagtg
     9301 gatgatcctg accgttctgc cggttctgcc gccagatctg cgtccgctgg ttccgctgga
     9361 tggtggtcgt ttcgccacgt cagatctgaa cgatctgtat cgtcgcgtga tcaaccgtaa
     9421 caaccgtctg aaacgtctgc tggatctggc tgcgccggac atcatcgtac gcaacgaaaa
     9481 acgtatgctg caggaagcgg tcgacgccct gctggataac ggtcgtcgcg gtcgtgcgat
     9541 caccggttct aacaaacgtc ctctgaaatc tttggccgac atgatcaaag gtaagcaggg
     9601 tcgtttccgt cagaacctgc tcggtaagcg tgttgactac tccggtcgtt ctgtaatcac
     9661 cgtaggtcca tacctgcgtc tgcatcagtg cggtctgccg aagaaaatgg cgctggagct
     9721 gttcaaaccg ttcatctacg gcaaactgga actgcgagga ctcgccacca ctatcaaagc
     9781 cgcgaagaaa atggttgagc gcgaagaagc tgtcgtttgg gatatcctgg acgaagtgat
     9841 ccgcgaacac ccggtactgc tgaaccgtgc accaacactg caccgtttgg gtatccaggc
     9901 atttgaaccg gtactgatcg aaggtaaagc tatccagctg cacccgctgg tttgtgcggc
     9961 atataacgcc gacttcgatg gtgaccagat ggctgttcac gtaccgctga cgctggaagc
    10021 ccagctcgaa gcgcgtgcgc tgatgatgtc taccaacaac atcctgtctc cggcgaacgg
    10081 cgaacctatc atcgttccgt ctcaggacgt ggtattgggt ctgtactaca tgacccgtga
    10141 ctgtgttaac gccaaaggcg aaggcatggt gctgactggc ccgaaagaag ctgagcgtat
    10201 ctatcgcgca ggtctggcct ctctgcatgc gcgcgttaaa gtgcgtatca ctgaatatga
    10261 aaaagatgaa aacggcgaat tcgttgcgca caccagcctg aaagacacga ccgttggtcg
    10321 cgccattctg tggatgatcg taccgaaagg tctgcctttc tccatcgtca accaggcgct
    10381 gggcaagaaa gcgatctcca aaatgctgaa cacttgctac cgtattctgg gcctgaaacc
    10441 gaccgttatt tttgcggacc agacgatgta caccggcttt gcttatgcag cgcgttcagg
    10501 tgcgtccgtt ggtattgatg acatggtcat cccggagaaa aaacacgaga tcatctctga
    10561 agcggaagcc gaagttgctg agatccagga gcagttccag tctggtctgg taaccgctgg
    10621 cgaacgctat aacaaagtta tcgatatctg ggctgcggcg aacgatcgtg tatccaaagc
    10681 gatgatggat aacctgcaaa ccgaaaccgt gattaaccgt gacggccagg aagagcagca
    10741 ggtttccttc aacagcatct acatgatggc cgactccggt gcgcgtggtt ctgcggcaca
    10801 gattcgtcag ctggcaggta tgcgtggtct gatggcgaag ccagatggct ccatcatcga
    10861 aacgccaatc accgcgaact tccgtgaagg tctgaacgta ctccagtact tcatctccac
    10921 gcacggtgcg cgtaaaggtc tggcggatac cgcactgaaa accgcgaact ccggttatct
    10981 gacccgtcgt ctggttgacg tcgcgcagga tctggtggtg accgaagatg actgtggtac
    11041 gcacgaaggt atcctgatga ccccggttat cgagggtggc gacgtgaaag agccgctgcg
    11101 tgaccgcgtt ctgggtcgtg tgacggcgga agatgtgctg aagccgggta cggcggacat
    11161 tctggttcca cgcaacacgc tgctgcacga acagtggtgt gacctgctgg aagcaaactc
    11221 cgttgacgcc gttaaagtgc gttccgttgt atcctgcgat accgattttg gtgtatgtgc
    11281 gcactgctat ggtcgtgacc tggcgcgtgg ccacatcatc aacaaaggtg aagctatcgg
    11341 cgttatcgcg gcacagtcca tcggtgaacc gggtacacag ctgacgatgc gtacgttcca
    11401 catcggtggt gcggcatcgc gtgcggctgc tgaatccagc atccaggtta agaacaaagg
    11461 tagcatcaag ctcagcaacg tgaagtcggt tgtgaactcc agcggtaaac tggttatcac
    11521 ttcccgtaac accgaactga agctgatcga cgaattcggt cgtaccaaag agagctataa
    11581 agtgccttat ggcgcagtca tggcgaaagg tgatggcgag caggttgccg gcggcgaaac
    11641 cgtggcaaac tgggacccgc acaccatgcc ggttatcacc gaagtgagtg gtttcatccg
    11701 cttcactgac atgatcgacg gtcagaccat tacgcgtcag accgacgaac tgaccggttt
    11761 gtcttcgctg gtggttctgg attcggctga acgtactacc ggtggtaaag atctgcgtcc
    11821 ggcgctgaaa atcgttgatg ctcagggtaa tgacgttctg atcccgggta ccgatatgcc
    11881 tgcgcagtac ttcctgccgg gtaaagcgat tgtacagctg gaagatggcg tacagatcag
    11941 ttctggtgac accctggcgc gtattccgca ggaatccggc ggtaccaagg atatcaccgg
    12001 tggtctgccg cgcgttgccg atctgttcga agcgcgtcgt ccgaaagagc cggccattct
    12061 ggcggaaatc gcaggtatcg tttccttcgg taaagaaacc aaaggcaaac gtcgcctagt
    12121 gattacgccg gttgatggta gtgacccgta cgaagagatg attccgaaat ggcgtcagct
    12181 caacgtgttc gaaggggaac gtgtagaacg tggtgatgtg atttccgatg gtccggaagc
    12241 gccgcacgac attctgcgtc tgcgtggcgt tcatgctgtg acgcgttata ttgttaacga
    12301 agttcaggat gtataccgtc tgcagggcgt taagattaac gataaacaca tcgaagttat
    12361 cgttcgtcag atgctgcgta aagcgaccat cgaaagcgcc ggtagttccg acttcctgga
    12421 aggcgaacag gttgaatact ctcgcgtcaa gatcgctaac cgcgagctgg aagcgaacgg
    12481 caaagtgggg gctaccttct cccgcgatct gctgggtatt accaaagcgt ctctggcaac
    12541 cgagtcgttc atctctgccg catcgttcca ggagaccacg cgtgtcctga ccgaagcagc
    12601 cgttgcgggt aaacgcgacg aactgcgcgg cctgaaagag aacgttatcg tgggtcgtct
    12661 gattccggcc ggtaccggtt atgcgtacca ccaggatcgt atgcgccgtc gcgccgcggg
    12721 cgagcagcca gcaacaccgc aggtcactgc ggaagatgca tctgcaagcc tggcagagct
    12781 gctgaacgca ggtctgggcg gttctgataa cgagtaatcg ttaaatggtg gaggggtatt
    12841 tatccctcca ccagcttcat gctggatacc gaattccggg tcgcttgcct acaaggaaag
    12901 aaaatgccag cgattatttc attaatctat ttaatgttta gtcttttagt atttacaaaa
    12961 aagataacca tttcaaacgt tctgtccgct tttttattgt ttctatcgt
//
LOCUS       DAJVSD010000116        12952 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.116, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000116 DAJVSD010000000
VERSION     DAJVSD010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 12952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12952
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.116"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..248
                     /locus_tag="OQP62_002646"
     CDS             <1..248
                     /locus_tag="OQP62_002646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4427 domain-containing protein"
                     /protein_id="HCS1722164.1"
                     /translation="MIKVNKEGRYLLDVNLASVDWPLRRKEAFASHVAGWLKHRFDIE
                     AGRYSVRGKDDYDAIPSYETPLKDQHPFYNHTVNVDW"
     gene            complement(407..1498)
                     /gene="ychF"
                     /locus_tag="OQP62_002647"
     CDS             complement(407..1498)
                     /gene="ychF"
                     /locus_tag="OQP62_002647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001538644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HCS1722165.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVV
                     PMPDPRLDQLAEIVKPQRILPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGH
                     VVRCFENDNIIHVAGKVNPAEDIDVINTELALADLDTCERAIHRVQKKAKGGDKDAKA
                     ELAALEKCLPHLAEAGMLRSLDLTDEDKAAIRYLSFLTLKPTMYIANVNEDGFENNPY
                     LDQVREIAAKEGSVVVPVCAAVEADIAELDDDERDEFMAELGLEEPGLNRVIRAGYRL
                     LNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQTIAFDDFITYKGEQ
                     GAKEAGKMRAEGKDYIVKDGDIMNFLFNV"
     gene            complement(1615..2199)
                     /gene="pth"
                     /locus_tag="OQP62_002648"
     CDS             complement(1615..2199)
                     /gene="pth"
                     /locus_tag="OQP62_002648"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HCS1722166.1"
                     /translation="MAIKLIVGLANPGAEYAATRHNAGAWYVDLLAERLRAPLREEPK
                     FFGYTSRITLEGEDVRLLVPTTFMNLSGKAVGAMASFYRIQPDEILVAHDELDLPPGV
                     AKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLGKPPVSEQK
                     LIDEAIDEAARCTELWFKEGLAKATSRLHTFKAQ"
     gene            2475..2696
                     /gene="ychH"
                     /locus_tag="OQP62_002649"
     CDS             2475..2696
                     /gene="ychH"
                     /locus_tag="OQP62_002649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress-induced protein YchH"
                     /protein_id="HCS1722167.1"
                     /translation="MKRKNASLFGNVLMGLGLVVMVVGVGYSILNQLPQFNLPQFFAH
                     GAILSIFVGAVLWLAGARVGGHEQVSDKY"
     gene            complement(2798..4483)
                     /gene="dauA"
                     /locus_tag="OQP62_002650"
     CDS             complement(2798..4483)
                     /gene="dauA"
                     /locus_tag="OQP62_002650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001525165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylic acid transporter DauA"
                     /protein_id="HCS1722168.1"
                     /translation="MNKLFSSHVMPFRALIDACWKEKYTASRFTRDVIAGITVGIIAI
                     PLAMALAIGSGVAPQYGLYTSAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGL
                     AGLLVATLMSGFFLILFGLARLGRLIEYIPVSVTLGFTSGIGITIGTMQIKDFLGLQM
                     AHVPEHYLQKVGALFMALPTVNIGDAAIGVVTLGTLIFWPRLGIRLPGHLPALLAGCA
                     VMGIVNLLGGNVATIGSQFHYVLADGTQGNGIPQLLPQLMLPWSLPGSDFTLSWDSLR
                     ALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHKANSELIGQGLGNMVAPFFGGITATA
                     AIARSAANVRAGATSPVSAVIHAILVILALLVLAPLLSWLPLSAMAALLLMVAWNMSE
                     AHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIARMTRLAP
                     VNVDVPEDVLVLRVIGPLFFAAAEGLFTDLESRIKGKRIVVLKWDAVPVLDAGGLDAF
                     QRFVKRLPEGCELRISNLEFQPLRTMARAGIKPIPGRLTFFPNRTEALADLLS"
     gene            complement(4608..5555)
                     /gene="prs"
                     /locus_tag="OQP62_002651"
     CDS             complement(4608..5555)
                     /gene="prs"
                     /locus_tag="OQP62_002651"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HCS1722169.1"
                     /translation="MPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQI
                     NENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVR
                     SARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLN
                     LDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVL
                     VDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIP
                     LTDEIKALPNVRTLTLSGMLAEAIRRISNEESISAMFEH"
     gene            complement(5821..6672)
                     /gene="ispE"
                     /locus_tag="OQP62_002652"
     CDS             complement(5821..6672)
                     /gene="ispE"
                     /locus_tag="OQP62_002652"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HCS1722170.1"
                     /translation="MMTHWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTLHIE
                     PRHDGEIHLLTPVTGVENEDNLIVRAARLLMKVASESGRLPAGSGADISIEKRLPMGG
                     GLGGGSSNAATVLVALNHLWQCGLSIDELATLGLTLGADVPVFVRGHAAFAEGVGEIL
                     TPVNPPEKWYLVAHPGVSIPTPVIFKDPQLPRNTPKRSIDTLLKCEFSNDCEVIARKR
                     FREVDAALSWLLEYAPSRLTGTGACVFAEFDTESCARQVLEQAPEWLNAFVAKGVNLS
                     PLHRELL"
     gene            complement(6669..7292)
                     /gene="lolB"
                     /locus_tag="OQP62_002653"
     CDS             complement(6669..7292)
                     /gene="lolB"
                     /locus_tag="OQP62_002653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein localization protein LolB"
                     /protein_id="HCS1722171.1"
                     /translation="MTLPDFRLIRLLPLASLVLTACTLPGHKGPGKSPDSPQWRQHQQ
                     EVRHLNQYQTRGAFAYISDDQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGN
                     VQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEV
                     NYHQDGKNWKVVYGGYDSKTQPAMPANMELSDGSQRIKLKMDNWIVK"
     gene            7606..8862
                     /gene="hemA"
                     /locus_tag="OQP62_002654"
     CDS             7606..8862
                     /gene="hemA"
                     /locus_tag="OQP62_002654"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_041689438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HCS1722172.1"
                     /translation="MTLLALGINHKTAPVSLRERVTFSPDTLDQALDSLLAQPMVQGG
                     VVLSTCNRTELYLSVEEQDNLQEALIRWLCDYHNLNEDDLRNSLYWHQDNDAVSHLMR
                     VASGLDSLVLGEPQILGQVKKAFADSQKGHLNASALERMFQKSFSVAKRVRTETDIGA
                     SAVSVAFAACTLARQIFESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRER
                     AQALADEVGAEVISLSDIDARLQDADIIISSTASPLPIIGKGMVERALKSRRNQPMLL
                     VDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRQAAAVEAETIVEQEASEFMA
                     WLRAQGASETIREYRSQSEQIRDELTTKALSALQQGGDAQAILQDLAWKLTNRLIHAP
                     TKSLQQAARDGDDERLNILRDSLGLE"
     gene            8903..9985
                     /gene="prfA"
                     /locus_tag="OQP62_002655"
     CDS             8903..9985
                     /gene="prfA"
                     /locus_tag="OQP62_002655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012132158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HCS1722173.1"
                     /translation="MKPSIVAKLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQ
                     LSDVSRCFTDWQQVQDDIETAQMMLDDPEMREMAQEELREAKEKSEQLEQQLQVLLLP
                     KDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSMSEGEHGGYK
                     EIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAELPDIN
                     PADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGA
                     RIHAAETAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDETME
                     GKLDMLIEPIVQEHQADLLAALSEQE"
     gene            9985..10818
                     /gene="prmC"
                     /locus_tag="OQP62_002656"
     CDS             9985..10818
                     /gene="prmC"
                     /locus_tag="OQP62_002656"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HCS1722174.1"
                     /translation="MDFQHWLHEAVNQLRDSDSPRRDAEILLEYVTGKRRTYIMAFGE
                     TPLTDVQQQQLAELLQRRKQGEPIAYLTGLREFWSLPLFVSPATLIPRPDTECLVEQA
                     LARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLAIRN
                     VRILQSCWFSALSGQQFDMIVSNPPYIDAQDPHLSEGDVRFEPRSALVADENGMADLT
                     HIIDNARQMLTPGGFLLLEHGWRQGEAVRAAFRRSGYTDVETCRDYGGNERVACGRFT
                     P"
     gene            10815..11204
                     /locus_tag="OQP62_002657"
     CDS             10815..11204
                     /locus_tag="OQP62_002657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB family protein"
                     /protein_id="HCS1722175.1"
                     /translation="MTIAMLLTLHLICVALSVSLFVARYWWRYCGHALAAARWTRIVP
                     PVIDTLLLLSGIGLIVKTHILPFTESGSWLTEKLFGVIIYIVLGFIALDYRQARSQQA
                     RFIAFPLALVVLYIIIKLATTKIPLLG"
     gene            11208..12017
                     /locus_tag="OQP62_002658"
     CDS             11208..12017
                     /locus_tag="OQP62_002658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat-containing protein"
                     /protein_id="HCS1722176.1"
                     /translation="MRSLADFEFNNAPLCDGMILASEMIRLDFPTQFVYDELERLVSL
                     AQEEISQLLSQDEQLEKLLALFYGEWGFTDSRGVYRLSDALWLDKVLKKRQGSAVSLG
                     AILLWIANRLDLPLVPVIFPTQLILRIESLEGEMWLINPFNGETLDEHTLEVWLKGNI
                     SPVAELFNEDLDEADNAEVIRKLLDTLKSSLMEERQMELALRVSEALLQFNPEDPYEI
                     RDRGLIYAQLECEHVALTDLSYFVEQCPEDPISEMIRAQINTIAHKQIVLH"
     gene            12055..12909
                     /gene="kdsA"
                     /locus_tag="OQP62_002659"
     CDS             12055..12909
                     /gene="kdsA"
                     /locus_tag="OQP62_002659"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HCS1722177.1"
                     /translation="MKQKVVNIGDIKVANDLPFVLFGGMNVLESRDLAMRICEHYVTV
                     TQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTFGVKVITDVHEASQA
                     QPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFHEGGN
                     DKVILCDRGANFGYDNLVVDMLGFSVMKKVSGNSPVIFDVTHALQCRDPFGAASGGRR
                     GQVTELARAGMAVGLAGLFLESHPDPANAKCDGPSALPLAKLEQFLTQIKAIDDLVKS
                     FDELDTEN"
BASE COUNT         3067 a         3380 c         3559 g         2946 t
ORIGIN      
        1 gaatgatcaa ggttaataaa gaagggcggt acttattaga tgttaatttg gcttctgttg
       61 attggccatt aagaagaaaa gaggctttcg caagtcatgt tgcgggatgg ctcaaacatc
      121 gttttgatat cgaagcggga aggtattccg ttcggggaaa agatgattat gatgcgatcc
      181 caagttatga gacgccgcta aaggatcagc atccttttta taatcataca gtgaatgtcg
      241 actggtaatt aagaaaaaaa cttaccctgt tagctctgcg ttaattgagc ctgtcagtat
      301 gagttgagat attatgaaat aaaaaatcca cgcggctgcg tggattttat gagtttcttt
      361 gcctcttatg agattcagca aaacctcata agacaacaat ttttacttag acgttgaaca
      421 ggaagttcat tatatcgcca tctttaacga tataatcttt gccttccgct cgcatcttac
      481 cggcttcttt cgcgccttgt tcacctttat aggtaataaa gtcgtcaaag gcgatagttt
      541 gagcgcggat aaagcctttt tcgaagtcgg tatggatttt acctgctgct tgcggcgcgg
      601 ttgcgccaac cggaatggtc catgcgcgaa cttctttcac cccggcggtg aagtaggtct
      661 ggaggttcag caggcgataa ccagcgcgaa taacgcggtt cagccccggt tcttccagac
      721 ccagttcagc cataaattcg tcacgctcgt catcatccag ctcagcaata tcagcttcga
      781 cggcggcaca caccggaacc acgaccgaac cttctttcgc ggcgatttcg cgaacctggt
      841 ccagatacgg gttattttca aaaccgtctt cattgacgtt agcgatatac attgtcggct
      901 tcagcgtcag gaagcttaaa taacggatag ccgctttatc ttcgtccgtc aggtccagcg
      961 aacgcagcat ccccgcttcg gccaggtgcg gcaggcattt ttccagcgcg gccagttccg
     1021 ctttggcgtc tttatcgccg cctttggctt tcttctgtac gcgatggatc gcgcgctcgc
     1081 aggtatcgag gtcagccagc gccagctcgg tattgataac atcaatatct tctgccggat
     1141 ttactttacc cgccacgtgg atgatattgt cgttctcaaa gcagcgaacc acgtgaccga
     1201 tagcttcggt ttcacggata ttggtcagga actggttacc caacccttcg cctttggatg
     1261 cgccttttac cagaccggcg atatccacga actccatcgt ggttggtaga atgcgttgcg
     1321 gtttaacaat ctcagccaac tggtccagac gcggatcggg catcggcacg acaccggtat
     1381 tcggttcgat agtgcagaac ggaaagtttg ccgcttcaat accggctttt gtcagcgcgt
     1441 tgaacagggt ggatttcccg acgttgggca gaccgacgat accgcatttg aatcccatga
     1501 tttaactcac cttaatatct taataatcaa cctgttatag aaaacagatt gcagaaatgg
     1561 aaataacttc gcctattata cacggcgtgc ggcaaaaatg ccgcacatca ctggttattg
     1621 cgccttaaag gtatgcaaac ggcttgttgc tttggccaga ccctctttga accacaattc
     1681 cgtacagcgc gccgcttcgt caatggcctc atcaattaat ttttgttcag aaacaggggg
     1741 tttacccagc acgaaaccaa caactttatt tttatcgcct ggatgaccaa ttccaacgcg
     1801 taagcggtga aagttgggat tattgcccag cttgctgatg atgtctttca gaccattgtg
     1861 gccgccgtgg ccgccgccaa gtttaaattt cgcgacgccc ggcgggagat ccagctcgtc
     1921 gtgagcgacc agaatttcgt ccggctgaat acggtaaaaa ctggccattg cgccaactgc
     1981 tttaccactg aggttcatga acgtggtggg taccagcagg cgaacatctt ccccttccag
     2041 cgtgatgcgt gaggtatagc caaagaattt aggctcttca cgcaacggcg cgcgcaggcg
     2101 ctccgccagt aaatcgacgt accatgcgcc tgcattgtgt cgcgtcgcgg catattccgc
     2161 gccgggattc gccagaccaa caatcaattt aattgccacg ttttttgtcc tgagtagatc
     2221 catgactggc gcgtagttta ctgtctgtct gcccgcttga caaaacacag cgacactctg
     2281 aagtaaatta aataattgcc agcattgatt attaaaaatg taaactgttc agagtgttat
     2341 ttgtaaagtt ttgttaaatg aaactttaca tttgtgatcg cacccgcact tacaaatgga
     2401 agtgttgtct atactttaca cataaagttt agggggattt cctaaaaaca acccaaaagt
     2461 tccggaggtg acatatgaaa cgcaaaaacg cttcgttatt cggtaacgtg ctgatggggt
     2521 tggggctggt cgtgatggtt gtcggcgtgg gttactctat tttaaaccaa ctgccgcagt
     2581 ttaatttgcc gcaatttttt gcgcatggcg caatactgag catttttgtc ggtgcagttc
     2641 tttggctggc gggggctcgt gtaggggggc atgagcaggt gagcgacaaa tattagtggg
     2701 tacgtcacta tgacaaacgt tgccgccgta gcgacaatcg tcgtcatagc taaccggttc
     2761 aggcccggta agcgttatcg ccaccgggca ttgtccatta actgagtaaa tccgctaacg
     2821 cctccgtcct gttcgggaag aaggtcagac gtccaggaat gggtttgata ccggcacgcg
     2881 ccattgtgcg cagcggttgg aactccaggt tactgatacg caattcgcaa ccctccggca
     2941 gacgcttcac aaaacgctga aaagcatcaa gcccgcctgc atccagcact ggtactgcgt
     3001 cccatttcag aacgacgata cgtttgccct taatacgtga ctcaaggtcg gtaaacagcc
     3061 cttccgccgc ggcgaaaaag agcggaccga taacacgcag caccagcaca tcttcaggca
     3121 catcgacatt gaccggcgca agtcgagtca ttcgcgcaat acggcgcata aacagcaggg
     3181 aagcaaggac aatccccacg ctgatggcga tgaccatatc aaacagaacc gttaatgaca
     3241 tgcacagcag cataacgata atgtcatctt tcggcgcatg gcgtaacaga tccaccactt
     3301 tatgggcttc actcatattc catgccacca tcagcagtag cgccgccatc gcggaaagcg
     3361 gcagccagga gagtagcggg gctaagacca gtagcgccag aatgaccaga atagcgtgaa
     3421 ttaccgccga gacgggagag gtcgcgccag cgcggacgtt ggcggcagag cgggcaatcg
     3481 cggcggtggc ggtgatgccg ccaaagaacg gcgcgaccat attccccagc ccctggccga
     3541 taagttcgct gttagcttta tgtttggtgc cggtcatgcc gtccagcacg acggcgcaga
     3601 gcaatgattc gattgccccc agcattgcca tcgagaaagc cgctggcagc agcgcgcgca
     3661 gtgaatccca gcttagcgta aaatcggagc caggaaggct ccacggcagc atcagttgcg
     3721 gcaggagctg cgggatgccg ttgccctgag tgccgtcagc cagaacgtaa tggaactgtg
     3781 agccgatagt cgccacattg ccgcccagca gattaacaat ccccattacg gcgcaaccgg
     3841 ccagcagcgc gggaaggtgt cccggcagac gaataccgag acgcggccag aaaatcagcg
     3901 ttcccagcgt taccacgcca atggcggcat cgccaatatt gacggtgggc aacgccataa
     3961 acagcgcgcc gactttctgc aaatagtgct ctggcacatg ggccatctgc agaccaagaa
     4021 aatctttaat ctgcatggta ccgatggtaa taccaatccc tgaggtaaaa cccaacgtga
     4081 ccgacaccgg gatatattca atcaatcgcc ccagtctcgc caggccgaaa aggatcagga
     4141 agaagcccga catcagcgtg gcgaccagta ggcccgccag accaaactgt tgcgacaccg
     4201 gatacaaaat caccacaaac gcggcggtag ggccggaaac gctaaagcgc gagccgccgg
     4261 ttagcgcgat cacgatcccg gcgacagcgg aggtatagag gccatactgc ggcgcaacgc
     4321 cactgccaat tgccagcgcc atcgccagcg ggatagcaat aatcccgacg gtgatcccgg
     4381 ctatcacatc acgggtgaac cgggaggcgg tatatttttc tttccagcaa gcatcgatga
     4441 gagcgcggaa aggcatcaca tgtgaggaaa ataatttgtt cacaataatg tttcatccat
     4501 gagcgcatca tctgtcaact aaatggcagg tgaaggaggc ataagtcata taaaagggtg
     4561 ttacagacaa aaaaacccgc cgcagcgggt ttcagatccg ggttcgatca atgctcgaac
     4621 atggcggaaa tcgattcttc gttgctgata cggcgaatcg cttcggccag catacctgac
     4681 agggtcaaag tacgcacgtt cggcagcgct ttgatttcgt cggtcagcgg aatggtgtca
     4741 cagacaacga cttcgtcaat aacggagttg cgcaggttgt ttgccgcatt gcctgagaag
     4801 atcgggtgcg tcgcgtaggc aaacacgcgt ttagcgccac gttctttcaa tgcttctgct
     4861 gctttgcaca gagtaccgcc ggtatcgatc atatcatcaa ccagcacgca gtcacggcca
     4921 gcgacgtcgc cgatgatgtg catcacctga gaaacgttcg cgcgcggacg acgtttatca
     4981 atgatagcca tatcggtatc gttcagcagc ttagcgatag cgcgggcacg aaccacgccg
     5041 ccaatatccg gggaaaccac gattgggtta tccagattca gttgcagcat atcttcgagc
     5101 aggattgggc taccgaacac gttatcaacc ggaacgtcaa agaagccctg gatctgttca
     5161 gcatgcagat ctacggtgag aacgcggtca acgccgacgc tggacaggaa gtcagcgaca
     5221 acttttgcgg taatcggcac acgggcggaa cgtacgcgac ggtcctgacg tgcatagcca
     5281 aagtagggga taacggcggt gatacgacct gcggaagcac gacgcagggc atcaaccata
     5341 acgaccaatt ccatcaggtt gtcgttggtt ggggcacaag tggactggat gatgaaaata
     5401 tcaccaccgc gtacattttc gttgatttgt acgctgactt cgccgtcgct aaagcgacct
     5461 acggcggcgt cgccgagaga agtgtacagg cggttggcaa tacgttgtgc tagttccggg
     5521 gtggcgttac cagcaaaaag cttcatatca ggcacgagaa gaacctcagg catgcgtcca
     5581 ttggtggaaa gaatctgccg aaaactgtgc gggccaggca aaatcctatc caggcggtgt
     5641 attaaagagc gcgatgcaac gtctggaaca aggtgacgtt gtcaccgaag ctcagcttgc
     5701 ccggcttact cgtcttcatt cacgtttcat gtgcgctggt atcaatgcct cacaccggtc
     5761 aaatacggca tatatgaccg gcgactcgtc atttcgccat cttcctgaaa cccgaatgcg
     5821 ttagagtaac tctcgatgca atggggaaag gttaacaccc ttcgccacaa aagcattgag
     5881 ccattccggg gcttgctcaa gcacctggcg agcacaagac tctgtatcga attcagcaaa
     5941 gacacaggcc cctgtcccag tcaggcgcga cggcgcgtat tctaacagcc aggaaagcgc
     6001 cgcatcaacc tcgcgaaaac gttttcttgc gataacctcg caatcattgc tgaattcaca
     6061 ttttagtaac gtatctattg acctttttgg cgtattacgc ggcaattgag gatctttaaa
     6121 gataactggc gtcggaatgc ttacgccagg gtgcgcgacc agataccatt tttccggcgg
     6181 attcaccggc gttaatattt cgcctacgcc ttcggcaaac gcggcgtggc cacgaacaaa
     6241 gaccgggacg tcggcgccga gcgtcaggcc gagcgtcgcc agttcatcaa tggaaagccc
     6301 gcattgccaa agatgattga gcgccaccag aacggtcgcg gcgttagacg agccgccacc
     6361 cagaccgccg cccatgggaa ggcgcttctc aatgctgata tccgcgccgc ttccggcggg
     6421 caggcgtcca ctctccgagg cgactttcat caacagccgc gcggcgcgga cgatcagatt
     6481 gtcttcattt tcaacgccgg ttaccggcgt taataaatgg atttcgccat cgtgacgcgg
     6541 ttcgatgtgg agtgtgtcgc cataatccag aaactgaaac agcgtctgca gcgtgtggta
     6601 gccgtctgca cgctgtccgg tgatatataa aaacagattt aattttgccg gagaaggcca
     6661 atgggtcatc atttcacaat ccagttatcc attttcagct taatgcgctg actgccatct
     6721 gaaagctcca tattggctgg catggcaggc tgcgttttgc tgtcatagcc accgtaaacc
     6781 actttccagt ttttaccatc ctggtggtag ttcacttcgc tcaggcggta ctggtcgtcc
     6841 agtttgtagt cggtggcatc gccaggcaga ccgaggatcc actgccgcag gctgtttaac
     6901 ggaatcggca tcccggtgag tttgccgatc atctcttcgg cgtcatcggc ggtataacgc
     6961 tggcctttgt tatccaccaa ctggacgttg cccggctggg cgttaagctc cagctcggtg
     7021 ctgcccagcg ggttggtaag cagcaggcgg tagcgatcct gtccggtctg ttgccagaag
     7081 aagcgcgcat agactttctg atcatctgag atgtaagcaa aggcgccgcg cgtctggtat
     7141 tgattcagat gacgcacctc ttgctgatgc tggcgccact gaggggaatc cgggctcttg
     7201 cccgggcctt tatgcccagg aagcgtacag gcggtgagaa ccaggcttgc taacggcagt
     7261 agacgaatca ggcgaaaatc gggcagggtc atagtgatga cgaatccttg tgatacggtg
     7321 caataattgc ctgaaggcgt tacgcttatc aggcctgaaa actgaaccgg caagctgtaa
     7381 aaacgttcgc gccgcgattc ggcaaatttt tgctatcggt tacagttata gcctttaatg
     7441 ctagcgccgc ctggtgacat cgtctacttt caagttgtct taaatcatca aattagcgag
     7501 cgctgccaat tactccaaaa gggggctctc tcttttattg accacgcgca tcctgtatga
     7561 tgcaagcaga ctaaccatat caacgctggt actactcccg cagacatgac ccttttagca
     7621 ctcggtatta accataaaac ggcacctgta tcgctgcgag aacgcgtaac gttttcgccg
     7681 gacacgcttg atcaggcgct ggacagcctg cttgcgcagc caatggtgca gggcggggtc
     7741 gtgctgtcaa cctgtaaccg tacagagctg tatttgagcg tggaagagca ggataacctg
     7801 caagaagcgc tgatccgctg gttatgcgat taccataacc tgaacgagga cgatctgcgc
     7861 aacagtctgt actggcatca ggacaatgac gccgtcagcc acctgatgcg cgtcgccagc
     7921 ggtctggatt cactggtgct gggcgaaccg caaatcctcg gtcaggtgaa aaaagcgttt
     7981 gcggattcgc aaaaaggcca ccttaacgcc agcgcgctgg agcgaatgtt tcagaagtct
     8041 ttttccgtcg ccaagcgagt gcggactgaa accgatatcg gcgccagcgc cgtctccgtc
     8101 gcgtttgccg cctgtacgct cgcccgccaa atctttgaat cgctctcgac ggtcactgta
     8161 ctgttagttg gcgcgggcga aactattgaa ctggtggcgc gtcacctgcg cgagcataaa
     8221 gtacaaaaga tgattatcgc caaccgaacc cgcgagcgcg cgcaagccct ggcggatgag
     8281 gttggcgctg aggttatctc gctcagcgat atcgacgccc gcttgcagga tgccgatatt
     8341 atcatcagtt cgaccgccag cccgctgccg attatcggta aaggcatggt ggagcgcgca
     8401 ttaaaaagcc gtcgcaacca gccgatgctg ctggtggata tcgccgtacc gcgcgacgtt
     8461 gagccggaag tcggcaaact ggcgaacgct tatctttata gcgtcgatga tttacagagc
     8521 atcatttcgc ataatctggc gcagcgtcag gctgcggcgg tggaagcgga aacgattgtt
     8581 gagcaggaag ccagcgagtt tatggcctgg ctacgcgccc agggggccag cgagaccatt
     8641 cgggaatacc gtagtcagtc ggagcagatt cgtgacgaac tgactaccaa agcgctgtcg
     8701 gcccttcaac agggcggtga tgcgcaagcc atcttgcagg atctggcatg gaaactgacc
     8761 aaccgcctga ttcatgcgcc aacgaaatca cttcaacagg ctgcccgtga cggggatgac
     8821 gaacgcctga atattctgcg cgacagcctc gggctggagt agcagcacac accacacttt
     8881 tttacagggt gaatttacgc ctatgaagcc ttctatcgtt gccaaactgg aagccctgca
     8941 cgaacgccat gaggaagttc aggcgttgct gggcgatgcg ggaattatcg ccgaccagga
     9001 ccgctttcgc gcattgtcgc gcgaatatgc gcaattaagc gacgtttctc gctgttttac
     9061 ggactggcaa caggttcagg acgatatcga gacggctcag atgatgctcg acgatcctga
     9121 aatgcgggaa atggcgcagg aagaactgcg cgaagcgaaa gaaaaaagcg aacaactgga
     9181 gcaacagtta caggtactgc tgctgccgaa agatccggac gatgaacgaa acgcgttcct
     9241 tgaggttcgc gccggcactg gcggcgacga agccgcgctg tttgccggcg atctgttccg
     9301 catgtacagc cgttatgccg aagcgcgccg ctggcgcgtg gagatcatga gcatgagcga
     9361 aggcgagcat ggcggttata aagagatcat cgccaaaatc agcggcgacg gcgtgtatgg
     9421 ccgactgaaa tttgagtccg gcggacaccg cgtacagcgt gttccggcga ccgagtcgca
     9481 ggggcgtatc catacctccg cctgtaccgt cgccgtgatg ccggagctgc cggaagccga
     9541 gctgccggat attaacccgg cggatctgcg cattgatacg tttcgttctt ccggcgcggg
     9601 cggtcagcac gttaacacca ccgactccgc tatccgtatt acccacttgc cgaccggcat
     9661 cgtggtggaa tgccaggacg agcgttcgca gcataaaaac aaagcgaaag cgctctcggt
     9721 gctcggggcg cgcattcacg ccgccgaaac ggcaaaacgc cagcaggccg aggcgtcaac
     9781 gcgccgcaac ctgcttggca gcggcgatcg cagcgatcgt aaccggacct ataatttccc
     9841 gcaggggcgc gtgaccgatc atcgtattaa tctgacgtta tatcgccttg atgaaacgat
     9901 ggaaggtaag ctggatatgc tgattgagcc gattgttcag gaacaccagg ctgacctgtt
     9961 agccgcgttg tccgagcagg aataatggat tttcagcact ggctacatga ggcggtaaac
    10021 cagctccggg acagcgacag cccccggcgc gacgccgaga tcctgcttga gtacgttacg
    10081 ggcaagaggc ggacgtatat catggccttt ggcgaaacgc cgcttaccga tgtccagcaa
    10141 caacagctcg cggagctgct gcagcggcgt aaacagggcg aacccattgc gtacctgacg
    10201 ggcttacgcg aattttggtc gctgccgctc ttcgtttctc ccgccacgct aatcccgcgc
    10261 ccggataccg aatgtctggt tgaacaggcg ttggcgcgat tgccggtcaa aacctgtcgt
    10321 attctggatt taggcaccgg aaccggcgcg attgcgctgg cgctggcctg cgagcgaccg
    10381 gattgcgagg tgactgcggt cgatcgtatg cctgatgcgg ttgcgctggc gatacgcaac
    10441 gcggaacatt tggctatccg gaatgtgcgt atactgcaaa gttgttggtt cagcgcacta
    10501 tcggggcagc agttcgacat gattgtcagc aatccgccct acattgacgc gcaggacccg
    10561 caccttagcg aaggcgatgt acgctttgaa ccgcgctcag cgttggtggc ggacgaaaac
    10621 ggtatggcgg atcttacgca tattatcgat aatgcccgcc agatgttaac gcccggcggc
    10681 ttcctgctgc tggaacacgg ttggcggcag ggcgaagcgg taagagcggc tttcaggcgg
    10741 tctggttaca cggatgtaga aacgtgtcgt gattatggtg gcaatgaacg cgtggcctgc
    10801 gggcgtttta cgccatgaca attgcaatgt tgctcacgct tcatcttatt tgtgttgcgc
    10861 tctccgtcag tttgtttgtc gctcgttact ggtggcgcta ttgcggccat gcgttggccg
    10921 ccgcgcgctg gacacgaatc gtgcctcccg tcatagatac cctgttactg cttagcggta
    10981 ttgggttaat cgttaaaacg cacatcctgc cattcacgga gtcgggctca tggctgactg
    11041 aaaaactgtt tggcgttatc atctacatcg ttttgggttt tattgcgctt gattatcgtc
    11101 aggcgcgcag ccagcaggcg cgttttatcg ctttcccgct ggcgctggtg gtgctgtaca
    11161 tcatcattaa actcgccacc acaaaaatac cgttactggg gtaagtcatg aggtcgttag
    11221 ctgatttcga atttaacaat gcgccgctgt gtgatggcat gatcctggca tcagagatga
    11281 ttcgcctgga ttttcccacg cagtttgtct acgacgaact ggaacgtctg gtcagtctgg
    11341 cgcaggaaga aattagccag ctcctgtctc aggatgagca actggaaaaa ttgctggcac
    11401 ttttttacgg cgagtggggg ttcacggatt cccgcggcgt ctaccgtctt tctgatgctt
    11461 tatggctcga taaagtcctg aaaaaacgcc aggggagcgc tgtatcgttg ggcgctattt
    11521 tattatggat agcaaaccgt cttgatttgc cgttggtgcc cgttatcttc ccaacgcagc
    11581 tgattttgcg tattgaatcg ctggaaggag aaatgtggct gattaacccg ttcaacggtg
    11641 aaacgcttga tgaacatacc ctcgaagtct ggttaaaagg caatattagt ccggtcgccg
    11701 agttgtttaa cgaagatttg gacgaagcgg ataacgccga agtgattcgt aagctactgg
    11761 atacgctgaa atcctcgctg atggaggaac ggcaaatgga gctggcgctg cgcgttagcg
    11821 aagcattgtt gcaatttaac ccggaagatc cttacgaaat ccgtgaccgc gggttgatct
    11881 acgcgcagct tgagtgtgaa cacgttgcgc tgactgattt aagctacttc gttgaacagt
    11941 gtccggaaga cccgatcagc gaaatgattc gtgcgcagat caacaccatt gcgcacaagc
    12001 aaattgttct acattaatta accgacattt tacctataag tgtaaggcga tcctatgaaa
    12061 caaaaagtgg ttaacattgg cgacattaag gtggcaaatg acctgccgtt tgtgctgttt
    12121 ggcggtatga acgtgctgga gtcacgcgat ctggcaatgc gcatttgtga gcactacgta
    12181 accgttaccc agaagctggg tattccttac gtgttcaagg cctcttttga taaagccaac
    12241 cgttcctcta ttcactctta ccgtgggccg ggtctggaag aagggatgaa aatcttccag
    12301 gaactcaaac agacatttgg cgtaaaagtg atcactgacg tccatgaagc cagccaggcg
    12361 cagcctgtgg ctgatgtggt tgacgtgatt cagctcccgg cgtttttggc gcgccagacc
    12421 gacctggtgg aagcgatggc gaaaaccggc gctgtgatta acgtgaaaaa gccgcagttt
    12481 gtaagcccgg gtcagatggg caatatcgtg gataagttcc atgagggcgg taacgataag
    12541 gtgattctgt gcgatcgcgg cgcgaacttc ggttatgaca acctggtggt ggatatgctg
    12601 ggctttagcg tgatgaaaaa ggtctccggc aactcgccgg tgattttcga cgttacccat
    12661 gcgctgcaat gccgcgaccc atttggcgct gcctcgggcg gtcgtcgtgg tcaggtgacc
    12721 gagctggcgc gcgccggtat ggctgtcggt ctggcgggcc tgttcctgga gtcgcatccg
    12781 gacccggcta acgcgaagtg cgacggtcct tccgcgctgc cgctggcgaa actggagcag
    12841 ttcctgaccc agataaaagc gattgatgat ttggtgaaaa gcttcgacga gctggatacc
    12901 gagaactgat tgcggttttt agcttgtgta ggccggataa gatactatcc gg
//
LOCUS       DAJVSD010000117        12944 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.117, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000117 DAJVSD010000000
VERSION     DAJVSD010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 12944)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12944)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12944
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.117"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..647)
                     /gene="artM"
                     /locus_tag="OQP62_002660"
     CDS             complement(<1..647)
                     /gene="artM"
                     /locus_tag="OQP62_002660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtM"
                     /protein_id="HCS1722178.1"
                     /translation="MLEYLPELLKGLHTSLTLTVASIAVALVLALVFTIILTLKTPFV
                     VWLVRGYITLFTGTPLLVQIFLIYYGPGQFPTLQEYPLLWHLLSEPWLCALIALSLNS
                     AAYTTQLFYGAIRAIPEGQWQSCGALGMSKKDTLAILLPYAFKRALSSYSNEVVLVFK
                     STSLAYTITLMEVMGYSQLLYGRTYDVVVFGAAGVIYLVVNGLLTLMMRLIERKAL"
     gene            complement(647..1363)
                     /gene="artQ"
                     /locus_tag="OQP62_002661"
     CDS             complement(647..1363)
                     /gene="artQ"
                     /locus_tag="OQP62_002661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtQ"
                     /protein_id="HCS1722179.1"
                     /translation="MNEFFPLASAAGMTVGLAVCALIIGLALAMFFAVWESVKWRPIA
                     WIGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTLHLGFTQIPVQMEIENFDVS
                     PFLCGVIALSLLYAAYASQTLRGALKAVPSGQWESGQALGLSKTAIFFRLVMPQMWRH
                     ALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFNWYIIAAAIYLVITLI
                     SQYILKRIDLRATRFERRPD"
     gene            complement(1370..2101)
                     /gene="artJ"
                     /locus_tag="OQP62_002662"
     CDS             complement(1370..2101)
                     /gene="artJ"
                     /locus_tag="OQP62_002662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1722180.1"
                     /translation="MKKVLIAALIAGFSLSATAAQTIRFATEASYPPFESMDANNKIV
                     GFDVDLANALCKEIDASCTFTNQAFDSLIPSLKFRRFDAVMAGMDITPEREKQVLFTT
                     PYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAK
                     LDLQNGRIDAVFGDTAVVTEWLKANPKLAPVGDKVTDKDYFGTGLGIAVRQGNTELQQ
                     KFNTALEKVKKDGTYETIYNKWFQK"
     gene            complement(2119..2847)
                     /gene="artP"
                     /locus_tag="OQP62_002663"
     CDS             complement(2119..2847)
                     /gene="artP"
                     /locus_tag="OQP62_002663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter ATP-binding protein
                     ArtP"
                     /protein_id="HCS1722181.1"
                     /translation="MSIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSL
                     LRVLNLLEMPRSGTLTIAGNHFDFTKTPSDKAIRELRQNVGMVFQQYNLWPHLTVVQN
                     LIEAPCRVLGLTKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEP
                     QVLLFDEPTAALDPEITAQIVSIIHELAETNITQVIVTHEVEVARKTASRVIYMENGH
                     IVEHGDAGCFAHPQTEAFKNYLSH"
     gene            complement(3076..3591)
                     /locus_tag="OQP62_002664"
     CDS             complement(3076..3591)
                     /locus_tag="OQP62_002664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1722182.1"
                     /translation="MRYSKLSLLIPCALLLSACTTVTPAYKDNGPRIGACVEGGPDSV
                     AQQFYDYRIQHHSNDIAALRPYLSDNLAKLLTDASRDTEHRQLMSGDMFSSRATLPDS
                     ANVASASTIPNRDARNIPLRVALKQGDQSWQDEVLMIHEGSCWVIDDVRYLGGDVHAP
                     AGTLRQSIENR"
     gene            3719..4042
                     /locus_tag="OQP62_002665"
     CDS             3719..4042
                     /locus_tag="OQP62_002665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-binding domain-containing protein"
                     /protein_id="HCS1722183.1"
                     /translation="MQFSTTPTLEGQSIVEYCGVVTGEAILGANIFRDFFAGIRDIVG
                     GRSGAYEKELRKAREIAFQELGEQAKALGADAVVGIDIDYETVGKDGSMLMVSVSGTA
                     VKTRR"
     gene            4039..4869
                     /locus_tag="OQP62_002666"
     CDS             4039..4869
                     /locus_tag="OQP62_002666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HCS1722184.1"
                     /translation="MKALLWLVGLALLLTGCASEKGIIDKEGYQLDTRHRAQAAYPRI
                     KVLVIHYTAENFDVSLATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGV
                     SFWRGATRLNDTSIGIELENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYDIKP
                     QNVVAHADIAPQRKDDPGPRFPWRELAAQGIGAWPDAQRVAFYLAGRAPYTPVDTATV
                     LALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD
                     "
     gene            complement(4866..5879)
                     /locus_tag="OQP62_002667"
     CDS             complement(4866..5879)
                     /locus_tag="OQP62_002667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HCS1722185.1"
                     /translation="MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLEKMG
                     AEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAV
                     AWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAAGEEVINLLAQANPQ
                     TRFTVLRPQSLFGPHDKVFIPRLAHMMHHYGSVLLPHGGSALVDMTYYENAIHAMWLA
                     SQPGCDHLPSGRAYNITNGENRTLRSIVQKLIDELTIDCRIRSVPYPMLDMIARSMER
                     FGKKSAKEPPLTHYGVSKLNFDFTLDTTRAQDELGYQPIVTLDEGIERTAAWLRDHGN
                     LPR"
     gene            complement(5975..7408)
                     /locus_tag="OQP62_002668"
     CDS             complement(5975..7408)
                     /locus_tag="OQP62_002668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2867 domain-containing protein"
                     /protein_id="HCS1722186.1"
                     /translation="MAQRILVLGASGYIGQHLVFALSQQGHQVRAAARRVERLEKHRL
                     ANVSCHKVDLHWPENLPALLRDIDTVYYLVHGMGEGGDFIAHERQAALNVRDALRQTP
                     VKQLIFLSSLQAPAHEQSDHLRARQLTADTLRDAGVPVTELRAGIIVGAGSAAFEVMR
                     DMVYNLPILTPPRWVRSRTTPIALENLLYYLVGLLEHPAHEHRILEAAGPQVLSYQQQ
                     FERFMAVSGKRRPLIPVPFPTRWISVWFLNVITSVPPTTAKALIQGLRHDLLADDAAL
                     KKLIPQTLITFDDAVRRTLKEEEKLVNSSDWGYDALAFARWRPEYGYFPKQAGFTAQT
                     PASLSALWQVVNRLGGKEGYFFGNILWQTRAAMDRLVGHKLAKGRPSHTLLKPGDTVD
                     SWKVIIVEPEKQLTLLFGMKAPGLGRLSFTLHDKGRYREIDVRAWWHPHGMPGLIYWL
                     LMIPAHLFIFRGMARRIARLAEQITEK"
     gene            complement(7419..8420)
                     /gene="ltaE"
                     /locus_tag="OQP62_002669"
     CDS             complement(7419..8420)
                     /gene="ltaE"
                     /locus_tag="OQP62_002669"
                     /EC_number="4.1.2.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low-specificity L-threonine aldolase"
                     /protein_id="HCS1722187.1"
                     /translation="MIDLRSDTVTRPGRAMLEAMMTAPVGDDVYGDAPTVNALQRYAA
                     DLSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQP
                     IDAAADGTLPLENVAAKIKADDIHFARTRLLSLENTHNGKVLPRAYLKDAWTFTRERG
                     LALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAT
                     RWRKMVGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLAQQLREAGADVMRHETN
                     MLFVRVGEAQAAALGGYLRERNILINAAPIVRLVTHLDVSREQLADVVAHWRAFLAR"
     gene            complement(8459..10177)
                     /gene="poxB"
                     /locus_tag="OQP62_002670"
     CDS             complement(8459..10177)
                     /gene="poxB"
                     /locus_tag="OQP62_002670"
                     /EC_number="1.2.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone-dependent pyruvate dehydrogenase"
                     /protein_id="HCS1722188.1"
                     /translation="MKQTVAAFIAKTLEQAGVKQIWGVTGDSLNGLSDSLNRMGTIEW
                     MPTRHEEVAAFAAGAQAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHI
                     PSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLP
                     GDVALKPAPENAVTHWYHAPHPVVTPAEEELKKLAQLLRYSSNIALMCGSGCAGAHEE
                     LVALAAKLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQF
                     PYRAFYPSDAKIIQIDINPGSIGAHSKVDMALVGDIKATLRALLPLVEEKSNRKFLDK
                     ALEHYRDARKGLDDLAKLSDKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLK
                     MNGKRRLLGSFNHGSMANAMPQALGAQATAPGRQVIAMCGDGGFSMLMGDFLSVVQMK
                     LPIKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKAADVD
                     GALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELA
                     KTNWLR"
     gene            complement(10335..11303)
                     /gene="hcr"
                     /locus_tag="OQP62_002671"
     CDS             complement(10335..11303)
                     /gene="hcr"
                     /locus_tag="OQP62_002671"
                     /EC_number="1.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH oxidoreductase"
                     /protein_id="HCS1722189.1"
                     /translation="MTMPTSQCPWRMQVHHIRQETPDVWTIALLCHDYYPYRAGQYAL
                     VSVRNSAETLRAYTLSSTPGVSEYITLTVRRIEDGTGSQWLTHDIKRGDYIWLSDAMG
                     DFTCDDKTEDKFLLLAAGCGVTPIMSMRRWLAKYRPQADVQVIFNVRSPDDVIFADEW
                     RQYPVTLVAENHATEGFIAGRLTTELLQRVPDLASRTIMTCGPAPYMDFVEQGVKALG
                     VTHFFKEKFFTPVAETATSGLKFTKLQPAQEFYAPIGTTLLEALESNKVPVAAACRAG
                     VCGCCKTKVVSGDYTVSSTMTLSEAEIAEGYVLACSCHPQGDLVLA"
     gene            complement(11315..>12944)
                     /gene="hcp"
                     /locus_tag="OQP62_002672"
                     /gene_synonym="priS"
     CDS             complement(11315..>12944)
                     /gene="hcp"
                     /locus_tag="OQP62_002672"
                     /gene_synonym="priS"
                     /EC_number="1.7.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydroxylamine reductase"
                     /protein_id="HCS1722190.1"
                     /translation="TIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKA
                     REYGIINHDVDNFAPRAFFSTLTNVNFDSPRIVGYARDAIAMREALKAQCLSVDANAH
                     CDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEH
                     AHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECAMEIGQMNFKVMSILDAGETTKY
                     GHPTPTQVNVKATEGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELR
                     KFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGSYDDRIWTRSIVGWPGVS
                     HLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIF
                     LVGGCDGARGERNYFTDFVTSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQC
                     NDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTA
                     PGFFTPDLLAILNEKFGLRSVTTVEEDMKQLLSA"
BASE COUNT         2913 a         3556 c         3629 g         2846 t
ORIGIN      
        1 agggctttac gctcaatcaa acgcatcatc agcgtcaata gaccgttgac gaccaggtaa
       61 attacgcctg ccgcgccaaa taccaccaca tcgtaggtac gaccatagag caactgactg
      121 taccccatga cctccatcaa ggtgatggta taggccagcg aggtactttt gaagaccagt
      181 accacctcat tagaatagga ggagagggcg cgtttaaacg catagggcaa caaaatcgcc
      241 agcgtatctt tcttactcat ccccagcgcg ccgcaggact gccactgacc ttccggaatc
      301 gcgcgaatcg cgccataaaa tagctgcgtg gtgtaagcgg cgctgtttag cgacaacgcg
      361 atcagtgcgc acagccacgg ttcagacagt agatgccaga gtagcggata ctcttgcagt
      421 gtcgggaatt gaccgggtcc gtagtagatc aggaaaattt gcaccaacaa cggcgtaccg
      481 gtaaacaacg tgatatagcc gcgcaccagc cacaccacga acggcgtttt tagcgtcagg
      541 atgatggtaa aaactaacgc cagcaccaaa gcgacggcaa tagaagccac ggtcagcgtc
      601 aggctggtgt gtagcccttt tagcagttca ggtaagtact caagcattag tccggcctcc
      661 gctcaaaacg tgttgcgcgc aggtctatgc gtttgagaat gtactgactg atcagcgtaa
      721 tgaccaggta aatagccgcc gcaataatgt accagttaaa cggttcctgg gtgcgtgtgg
      781 caatactttt ggtctgcaac atcagatcgt taacgctgat aaggctgacc agagccgtat
      841 cttttagcaa caccagccac tgattaccca gccctggcag ggcgtgacgc cacatctgcg
      901 gcatcaccag acggaaaaaa atcgccgtct ttgataatcc cagtgcctga cccgactccc
      961 actgaccaga cggaacggct ttcagcgcgc cgcgtagcgt ctgcgacgca taggccgcat
     1021 acagcaggga caacgcaatc acgccgcaca ggaacggact gacgtcaaag ttctcaatct
     1081 ccatttgcac cgggatctgc gtaaaaccga gatggagggt aaacccgtca gacagcgtaa
     1141 gcaggagttg cgaggagccg aaatagataa acagcaccac cagaatttcc ggcaggccgc
     1201 gcaaaatagt gaccagcgcg gagcctatcc aggcaatcgg gcgccatttt acggactccc
     1261 agacggcaaa gaacatggct aacgcgaggc caatgatcag cgcacagacg gcaaggccga
     1321 cggtcatccc ggcggcgctt gctaaaggaa aaaattcgtt catcaaagat tacttctgga
     1381 accatttgtt atagatggtc tcgtaagtcc catctttctt cactttttcc agcgcagtat
     1441 tgaatttctg ctgcagctcg gtgttgccct gacgtaccgc gatacccagg ccggtgccga
     1501 aataatcttt atcggtgact ttatcgccga ccggcgccag cttaggattg gctttcagcc
     1561 attcggtcac gaccgccgtg tcgccgaaaa cagcgtcgat acggccattt tgtagatcca
     1621 gcttcgcgtt ctgatagctg tcatacggta cggtggtgat ttccggatgc ttatccatga
     1681 tgaatttctg gtgcgtcgta ccgttctgta cgccgacttt cttacctttc agttgatcga
     1741 cgctggtgta tttgccctgc tgacccacga acagcgcgga gttgtcgtaa tatggcgtgg
     1801 taaacagcac ctgcttttca cgttccggcg tgatatccat tcccgccatt acagcgtcga
     1861 agcggcggaa tttcaggctg gggatcaggc tgtcgaacgc ctgattggta aaggtacagg
     1921 aggcgtcgat ctctttacat agcgcgttgg ccaggtcgac gtcaaagccg acaatcttgt
     1981 tattagcatc catcgattcg aacggcggat aggacgcttc ggtcgcaaaa cgaatggtct
     2041 gggctgctgt agcggaaagg ctaaagcctg caattagcgc ggcaatcaga acttttttca
     2101 ttgtcattgt cccgaatctt agtgagagag atagtttttg aacgcttcgg tctgagggtg
     2161 agcaaagcaa cccgcatcac cgtgctcgac gatgtgacca ttttccatat aaatcacacg
     2221 actggcggtc ttacgcgcca cttcgacttc atgcgtaacg atcacctgag taatgttcgt
     2281 ttccgccagc tcatgaataa tgctgacgat ttgagcggta atttccgggt ccagcgcggc
     2341 ggtcggttca tcaaacagca gcacctgcgg ctccatcatc agcgcgcggg caatcgcgac
     2401 gcgctgctgc tgaccgccgg aaaggtgcaa cggataacga tcgctatagg gcttcagacg
     2461 taaacgctcc agcagctttt ctgcgcgcgc cagcgcctga tcttttgtca gacccagtac
     2521 gcggcagggc gcttcaatca gattctgcac aacggtgaga tgcggccaaa gattatattg
     2581 ttgaaagacc attccgacat tttgacgtag ctcacgaatc gccttatcgg acggcgtttt
     2641 cgtaaagtca aaatggttcc cggcgatagt cagagtgccg gagcgcggca tctcaagcag
     2701 attgagtaca cgcagcagcg aacttttacc cgccccgctt gggccaagca acaccagcgt
     2761 ttcgccttcg gggcaatcca gcgtgatatc gaacagcgcc tgatgcgcgc cgtaaaagca
     2821 attaatgccg tttaattgaa tactcattga cactcgtata caggcagtct gatagctatt
     2881 gaagccgcag atagtacctt tcgcagaata gttatgcaat atttatgcgt taaaagttaa
     2941 atatatccca cattcttccc taaacatagc acaaaatagc aggaggaata gtaggtaaga
     3001 agaattgtcg gcatcccgtg cagaatgcca gacaatttac ggggttatgg gtgcaaaagc
     3061 ggggaatact gactgttaac ggttttctat cgactggcgc agcgtaccgg caggggcatg
     3121 gacatctccg cccagatagc gaacgtcgtc aatcacccag catgagcctt cgtgaatcat
     3181 aagcacttca tcctgccagc tttgatcgcc ctgttttaac gccacccgca gaggaatatt
     3241 gcgcgcatct cggttcggaa tggttgatgc gctggcgacg ttggcgctat ccggcagcgt
     3301 agcgcggctg gagaacatat cgccgctcat caactggcgg tgttccgtat cgcggctggc
     3361 gtcggtcaac aatttcgcca ggttatcact caagtagggg cgaagcgcgg cgatatcatt
     3421 gctgtggtgt tgaatacggt agtcgtaaaa ttgttgagcc acgctgtccg ggccgccttc
     3481 cacacacgcg ccgatacgcg ggccattatc tttgtaggcg ggagtgacgg tcgtacaggc
     3541 gctaagcaga agcgcgcacg ggatgagcaa agagagttta gaatagcgca tgatgatttc
     3601 cttataggcg atcgagcaaa aaccgatcta cgataatcaa ttatatcctt tcaatgatag
     3661 cgtatcagct tgataatgcg tttgagatcg tgtgcttagc taacccggga gattcactat
     3721 gcagttttca acaaccccaa cgctggaagg acaaagcatc gtggagtatt gcggtgtggt
     3781 aacgggcgaa gccattttag gcgccaatat tttccgcgat tttttcgccg gcattcggga
     3841 tatcgtcggc ggacgttccg gcgcgtatga gaaagagctg cgtaaagcgc gtgaaatcgc
     3901 ttttcaggaa cttggcgagc aggctaaagc gttgggcgcc gatgcggtgg taggcatcga
     3961 tattgattac gaaactgtcg gcaaggatgg cagtatgctg atggtcagcg tcagcggaac
     4021 ggcggtgaaa acgcgccgat gaaagcgcta ctgtggctgg ttggtctcgc gttgctgtta
     4081 acaggctgcg cgagcgaaaa aggaattatc gataaagagg gatatcagct tgatacccga
     4141 catcgggcgc aggcggccta tccgcgcatt aaagtcctgg tgattcacta tacggcggaa
     4201 aactttgacg tttcgctggc gacgttaacg ggtcgcaacg tcagttcgca ttacctgatt
     4261 cccgcaaccc cgccattata tggcggtaaa ccgcgcatct ggcaactggt gccggaacag
     4321 gatcaggctt ggcatgcggg cgtcagtttc tggcgaggcg ccacgcgtct caatgatacg
     4381 tctattggca ttgagctgga aaatcgcggc tggcgaatgt ccggcggggt gaaatctttc
     4441 gcgccgtttg aatccgcgca aattcaggca ttgatcccgt tagcgaagga cattatcgcg
     4501 cgctatgaca tcaaaccgca gaatgtggtg gcccatgcgg atatcgcgcc gcagcgtaaa
     4561 gacgatcccg gcccgcgctt cccgtggcgc gagctggcgg cacaggggat tggcgcctgg
     4621 cctgacgccc agcgtgtggc gttttatctg gctggacgcg cgccgtatac gccagtcgat
     4681 accgcaacgg tgcttgcgtt actctcgcgc tatggctatg aagtcaaagc cgatatgacg
     4741 gcgcgcgagc aacagcgggt gattatggcg ttccagatgc acttccgtcc ggcgcaatgg
     4801 aacggtatcg cagatgccga aacgcaggcg attgccgaag cattactgga gaagtacggc
     4861 caggattaac gcggtaaatt tccgtgatcg cgcagccagg cggcggtgcg ctcaatacct
     4921 tcgtccagcg tgacgatggg ctggtagccc agctcgtcct gcgcgcgagt cgtatcgagc
     4981 gtaaaatcaa aattcagttt tgacacgccg taatgcgtta gcgggggctc tttggcggat
     5041 tttttgccga agcgctccat actgcgggcg atcatatcca gcatcgggta aggcacagag
     5101 cgaatgcggc agtcgatagt caattcatca attaactttt gtacgatgct gcgtaaggtg
     5161 cggttttcgc cgttagtgat gttataagcg cggccagaag gcagatgatc gcagcccggc
     5221 tggctggcca gccacatggc gtggatcgca ttttcatagt aggtcatatc gaccagcgcg
     5281 ctgcccccgt gcggtaataa gacgctaccg taatggtgca tcatatgcgc cagacgtggg
     5341 ataaatactt tatcgtgcgg gccaaacagg ctttgtggac gcaataccgt aaaacgtgtt
     5401 tgcggattgg cctgcgccaa cagattaatc acctcttcgc cggcggcttt actgcgggcg
     5461 aactcattgg caaaccgatg cgggcggaaa tcttctttga tatcacggtg atggtggtaa
     5521 tcaaaataga gcgagggaga ggagatatga ataaaattgc gcacgcccca ggcgaccgcc
     5581 cattctccca gacggcgggt ggcgcgaaca ttcgccagat cgaaagcctg ttgggttccc
     5641 cagggcgagg taaagctgga gcagtgccac aacgtgtcga tcccggcaag catcacttta
     5701 gcctgcgagg agaccagttc ggttaaatcc gcatggacga attccgcgcc cattttttca
     5761 agcagcttgc ccatcgcttc attgcgaccc gtcgctctga cgctgatgcc tttattgcgc
     5821 aaaaattcaa ccgcgtttcg acctaagccg ctggtggcgc cggtaaccag taccttcata
     5881 tcaatccact gtgtttaata aaccgtcgtg cgcattcttc cgtgaattac gtcggtatgc
     5941 aatgggaaac acgaaagaat acagcaactt tttctcattt ttctgtgatt tgttctgcaa
     6001 gtcgggcaat acgccttgcc attccccgga aaataaacag gtgcgccggg atcatcagta
     6061 gccagtaaat caggcccggc attccgtgtg gatgccacca ggcgcgcacg tcaatttcgc
     6121 ggtagcggcc tttatcgtgc agcgtgaagc taagccgccc cagacccggc gctttcatgc
     6181 caaacaagag cgtgagctgt ttttctggtt cgacaatgat cactttccag ctatctaccg
     6241 tatcgccagg cttgagcaag gtatgcgacg ggcggccttt cgccagttta tgccccacca
     6301 gacggtccat cgcggcgcgc gtctgccaca aaatattgcc gaaaaaatag ccctctttgc
     6361 cacccagccg atttacgacc tgccatagcg ccgataggct ggccggggtc tgcgcggtaa
     6421 agcccgcctg ctttggaaaa tagccgtatt cgggacgcca gcgggcgaag gccagcgcgt
     6481 cgtagcccca gtcgctggag ttcaccagtt tttcttcttc tttcagcgtg cggcgaacgg
     6541 cgtcatcaaa ggtgataagc gtttggggga tcaacttttt taacgcggcg tcatcggcca
     6601 gcaaatcgtg ccttaatccc tggattaacg cttttgcggt agttggcggc acggaggtaa
     6661 tgacgtttaa aaaccagacc gaaatccagc gggtcggaaa aggcaccggg atcagcggac
     6721 gccgtttacc gctgacggcc ataaaacgtt caaactgctg ctgataactt aatacctgcg
     6781 gcccggcggc ttccagaata cgatgctcgt gcgcagggtg ctccagtaag ccgaccaggt
     6841 agtagagtaa attttccagg gcgatgggcg tggtgcgcga acgcacccag cgcggcggcg
     6901 tgagtattgg caggttgtaa accatgtcgc gcatgacctc aaaggcggcg gagcctgcgc
     6961 cgacgatgat cccggcgcgt aattccgtca ccggtacgcc tgcgtcgcgc agcgtgtcag
     7021 ccgtaagctg gcgggcgcgc aggtgatcgg attgctcatg cgccggcgcc tgcaatgaac
     7081 tgaggaaaat aagttgttta accggcgtct ggcgcagcgc gtcgcgcacg ttgagcgccg
     7141 cctgacgctc atgggcgata aagtcgccgc cttcgcccat gccgtgtacc agatagtaaa
     7201 cggtatcaat gtcgcgaagc agcgcgggta aattttccgg ccagtgcaga tcgaccttat
     7261 gacaactgac gttggcgagg cgatgttttt ccagacgttc cacgcgccgc gccgccgccc
     7321 gcacctgatg tccttgctga cttagcgcaa agaccaggtg ctgaccgata tagccgctgg
     7381 cgccgaggac cagaatgcgt tgcgccacgt tgctctcctt agcgggctaa aaaggcgcgc
     7441 cagtgggcga cgacgtcggc aagctgttcg cgagagacat ccagatgcgt caccagacgc
     7501 acaatcggcg cggcgttaat caggatattc cgttcccgca aatagccgcc aagcgcggcg
     7561 gcctgtgctt cgccaacgcg aacaaacagc atattcgttt cgtggcgcat gacatccgcg
     7621 cccgcttcgc gaagctgctg cgccagccag gcggcgttgt catgatcctc ttgcagacgc
     7681 gccacgttat gcttcagcgc atacagtccg gccgctgcca gaatcccggc ctgacgcatt
     7741 ccgccgccga ccattttacg ccagcgcgtc gcgcgtttaa tgtaatcgcg gttgccgacc
     7801 agcagcgaac cgaccggcgt cccgagacct tttgacaggc agatggtaaa agagtcgcaa
     7861 tactgcgtaa tctcttttaa ctcacagccg taggcaacca ccgcgttaaa aattcgggcg
     7921 ccgtcaacgt gcagcgccag cccacgttcg cgggtaaacg tccaggcgtc tttcagatac
     7981 gcgcgcggca gcactttccc gttatgcgta ttttccagac tgagcaagcg cgtgcgcgcg
     8041 aagtggatgt catccgcttt aatcttcgcc gctacgttct ccagcggcag cgtaccgtcc
     8101 gcggcggcat caataggctg cggctgaatg ctgccgagca ccgcagcgcc gccagcttca
     8161 tagagataat tatgtgcgcc ctgaccgacg atatactctt cgccgcgttc acaatggcta
     8221 agcagcgcga ccagattggc ctgggtgccg gtgggtaaaa aaagcgccgc ttctttaccg
     8281 gaaaggtcgg cggcgtagcg ctgaagggcg ttaacggtag gggcatcgcc gtatacgtcg
     8341 tccccgaccg gggcggtcat catcgcctcg agcatggcgc ggcccggtcg ggtaacggta
     8401 tcactgcgta aatcaatcat ggcacatccc tggattttaa aaggtgatgt gcactgtttt
     8461 accttagcca gtttgttttc gccagttcga tcacttcatc gccgcggccg ctaataatgg
     8521 cgcgcagcat gtacaggcta aagcctttcg cttgttccag tttgatctgc ggcgggatcg
     8581 ccagctcttc ttttgccacg accacgtcaa ccagtaccgg gccatcgatg gaaaacgcgc
     8641 gctgtagcgc tccgtccacg tctgcggctt tttccacgcg aataccggta atgccgcagg
     8701 cttcggcgat acgcgcgaaa ttggtgtcgt gcagttcggt accgtcggta aggtaaccgc
     8761 cagctttcat ttccatcgcc acaaagccca gcacgctgtt attaaagacg acgattttta
     8821 tcggcagctt catctgtacc accgagagaa aatcgcccat cagcatactg aagccgccat
     8881 caccgcacat cgcgataacc tgacgacccg gcgcggtggc ctgagcgccg agcgcctgcg
     8941 gcatggcgtt ggccattgac ccgtggttaa acgagcccag caggcggcgc ttgccgttca
     9001 tttttagata gcgggccgcc cagacggtcg gcgtgccgac atcgcaggta aaaatagcgt
     9061 cgtcagcggc gaaatgacta atttgttgcg ccagatattg tgggtggatg gctttatcgc
     9121 tgagtttggc taagtcatca agccctttac gggcgtcccg atagtgttcc agagctttat
     9181 cgaggaattt acgattgctt ttttcttcca ccagcggcag cagggcgcga agcgtggctt
     9241 taatatcgcc caccagcgcc atgtcgactt tgctgtgcgc gccaatactg cccgggttga
     9301 tgtcaatctg aatgattttg gcatcgctcg gataaaaggc gcgatagggg aactgggtgc
     9361 cgagcaggat cagcgtatcg gcgttcatca tggtgtggaa gccagaagag aagccaatca
     9421 ggccggtcat tcccacatca taagggttat cgtactcaac gtgctctttg ccgcgcaggg
     9481 catgaacgat tggcgctttt agttttgccg ccaacgcgac caactcctca tgcgcgcccg
     9541 cgcagccgct accgcacatc aatgcgatat tgctggagta gcgcagcagt tgcgccagtt
     9601 ttttcagctc ttcctccgcc ggcgtaacga cggggtgcgg ggcatggtac caatgggtga
     9661 cggcgttttc aggcgcgggt ttcagcgcca cgtcacccgg aagtacgacc acggagacgc
     9721 cgcgatttag caccgctttg cgcatggcga tggcgagtac ctgcgggatc tgctccgggc
     9781 tggaaaccaa ctcgcaatag tggctgcatt cacggaacaa ctcctgcggg tgggtctcct
     9841 ggaaataacc gctgccgatt tcactggacg gaatatgggc ggcgatcgcc agaacaggga
     9901 cgtggttacg gtggcaatca aacaggccat tgatcaggtg caggttgccc ggtccacatg
     9961 aaccggcgca cactgccagc tcgccggtaa gctgcgcttg tgcgccggcg gcgaaagcgg
    10021 cgacctcttc gtggcgggtt ggcatccatt caatggttcc catacgatta agactatcgc
    10081 tcaggccgtt cagggagtcg ccagtgacgc cccagatttg ttttacgcca gcctgttcca
    10141 gcgttttggc gataaaagca gcaacggttt gtttcatggt tctccatctc cttaaatgtg
    10201 ataacggtta caagtttagt tgaagatgac gatgacgttt ttctttggcg gagagagggg
    10261 cgaaaggatg aagcgagtgg taaatcgccc ggtggcgctg acgcttaccg ggcctacgat
    10321 ggaacgttta ccgattatgc gagaacaaga tcgccctgcg gatggcagga gcaggccagt
    10381 acgtaacctt cggcaatctc cgcctcgctc agcgtcatgg tgctgctcac cgtatagtcg
    10441 ccggaaacga ctttggtttt acagcagccg caaacacctg cccgacaggc agcggcaacc
    10501 ggtactttat tactctccag cgcctccagc agcgtcgtac cgattggggc ataaaattcc
    10561 tgcgctggct gtagtttggt gaatttcagg ccgctggttg ccgtttccgc caccggcgtg
    10621 aagaacttct ctttaaagaa gtgcgttacg ccaagcgctt tcactccctg ttcaacgaaa
    10681 tccatatagg gcgccgggcc gcaggtcatg atagtgcgcg atgccaaatc cggtacgcgc
    10741 tgtaacaatt ccgtggtcag acggcccgcg ataaaacctt ccgtggcatg attttccgcc
    10801 actagcgtga ccggatactg tcgccactcg tcggcaaaaa tcacatcatc cggcgaacgg
    10861 acgttaaaga tgacctgcac gtcggcctgc gggcggtatt tcgccagcca gcgacgcatc
    10921 gacatgattg gcgttacgcc acaaccggcg gcgagcagca gaaacttatc ttctgtttta
    10981 tcgtcacagg taaaatcgcc cattgcatca gacagccaga tgtaatcgcc gcgcttgatg
    11041 tcatgggtca accactgtga acccgtgcca tcttcaatcc gacgaacggt cagcgtgata
    11101 tattcactga cgcccggcgt agacgaaagg gtgtaggcgc gcagcgtttc cgctgaattg
    11161 cgcacgctca ccagcgcata ctgcccggcg cggtaagggt agtagtcatg gcataatagc
    11221 gcaattgtcc atacatccgg cgtctcctga cggatgtgat gcacctgcat tcgccaggga
    11281 cattgtgagg ttggcatcgt catcattggc ctccttacgc gctcagcaat tgcttcatgt
    11341 cttcttcaac agtggtcacg gagcgcagac cgaacttctc gttgaggata gccagcaaat
    11401 ccggcgtgaa gaagcctggt gcggtcggcc cggtgacaat atttttcacg cctaatgaca
    11461 gcagcgtcag cagaataacg atcgctttct gctcaaacca ggagagcacc agcgatagcg
    11521 gcagatcgtt gacgccgcag cccagttttt ccgccagcgt caccgccagg ataatcgcgg
    11581 agtaagcatc gttacactga ccggcatcga ccagacgcgg cagcccttcg atgtcgccga
    11641 actccagttt gttgaaacgg tatttaccgc acgccagagt cagaatcagg cagtcatccg
    11701 gcacgctggt gacgaaatcg gtaaagtagt tacgctcgcc gcgcgcgccg tcacagccgc
    11761 cgaccaggaa gatgtgacgc agtttttcac gactgaccag atcgatgagc gtatcggcag
    11821 cgccgagcag ggtctgacga ccaaaaccga cggtgatgag atgcggaatt tcgctatacg
    11881 ggaagcccgc catctgctgc gcctgggcaa tgaccggccc gaagtcatca ccttcaagat
    11941 ggctaacgcc cggccagccg acgatgctac gggtccagat acggtcgtca tagctgccca
    12001 cggtcgggtc gataatgcag ttagaggtca tcacgattgg gccagggaag cgggcgaatt
    12061 cgacctgctg attctgccag ccgctgccgt agttaccgac cagatgcttg aatttacgca
    12121 gttccgggta gccgtgtgcg ggtagcattt cgccgtgagt gtagacgtta acgccggtgc
    12181 cttcggtctg ctccagcagg ttgtagagat ctttcagatc gtgaccggag atcagaatgc
    12241 acttgccttc agtcgctttg acgttgacct gagtcggcgt tgggtgaccg tatttggtgg
    12301 tttcaccggc atccagaatg ctcatcactt taaagttcat ctggccgatt tccattgcgc
    12361 actccagcag cgcgttcata tcagcaggcc aggtgccgag ccaggccatg attttgtggt
    12421 actgcgcata aatgtcgttg tcgtattgac cgagaacgtg cgcgtgttcc atgtacgccg
    12481 ccgcgccttt cagaccgtac aggcacagca gacgcaggcc gaggatgttc tcgccaatgg
    12541 cggctttatc tttattcggg gtaaattccg ctgcctgacg ttgcagttcg cccagatcgt
    12601 cgctaaccag ttgcagatcg gccatcggat tgtcgcaatg cgcattagca tccacgctca
    12661 ggcactgggc tttcaacgct tcacgcatgg ctatagcgtc acgggcgtag ccgacgatac
    12721 gcggagagtc gaagttaacg ttggtcagcg tggagaaaaa cgcgcgcggc gcaaagttat
    12781 caacgtcgtg attaatgatg ccatattcac gggccttcac cgcccaggca gacaaacctt
    12841 gcaaagccgc aatcagcaga tcctgcagat cggacgtttc agccgtttta ccgcacattc
    12901 cctgcgcgta ggagcagccg tttccggctg gtgtacggat ggtt
//
LOCUS       DAJVSD010000118        12745 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.118, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000118 DAJVSD010000000
VERSION     DAJVSD010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 12745)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12745)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12745
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.118"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            43..894
                     /locus_tag="OQP62_002673"
     CDS             43..894
                     /locus_tag="OQP62_002673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015606274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HCS1722191.1"
                     /translation="MGMKETVSNIVTSQAEKGGVKHVYYVACGGSYAAFYPAKAFLEK
                     EAKALTVGLYNSGEFINNPPVALGENAVVVVASHKGNTPETIKAAEIARQHGAPVIGL
                     TWIMDSPLVAHCDYVETYTFGDGKDIAGEKTMKGLLSAVELLQQTEGYAHYDDFQDGV
                     SKINRIVWRACEQVAERAQAFAQEYKDDKVIYTVASGAGYGAAYLQSICIFMEMQWIH
                     SACIHSGEFFHGPFEITDANTPFFFQFSEGNTRAVDERALNFLKKYGQRYYPETFTEG
                     ECVIGAG"
     gene            827..1157
                     /locus_tag="OQP62_002674"
                     /pseudo
     CDS             827..1157
                     /locus_tag="OQP62_002674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462499.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
     gene            complement(1204..2556)
                     /gene="gorA"
                     /locus_tag="OQP62_002675"
     CDS             complement(1204..2556)
                     /gene="gorA"
                     /locus_tag="OQP62_002675"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003861215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HCS1722192.1"
                     /translation="MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVN
                     VGCVPKKVMWHAAQIREAIHLYGPDYGFDTTINQFDWSKLIASRTAYIDRIHTSYDNV
                     LGKNNVDVIKGFARFVDAKTIEVNGETITADHILIATGGRPSHPSIPGVEYGIDSDGF
                     FALSALPERVAVVGAGYIAVELAGVINALGAKTHLFVRKHAPLRSFDPMISETLVEVM
                     NAEGPQLHTHAVPKAVVKNADGSLTLELEDGRSETVDCLIWAIGREPSTDNINLAAAG
                     VKTNEKGYIIVDKWQNTNVEGIYAVGDNTGAIELTPVAVAAGRRLSERLFNNKPDEHL
                     DYSNIPTVVFSHPPIGTVGLSEPQAREQYGDEQVKVYKSSFTAMYTAVTTHRQPCRMK
                     LVCVGPEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTASEEFVTMR
                     "
     gene            complement(2661..3503)
                     /locus_tag="OQP62_002676"
     CDS             complement(2661..3503)
                     /locus_tag="OQP62_002676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HCS1722193.1"
                     /translation="MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKEKPFLYLDTHAG
                     AGRYQLGSEHAERTGEYLEGIARIWQQDDLPAELEPYISVVKHFNRSGQLRYYPGSPL
                     IARQLLREQDSLQLTELHPSDFPLLRAEFQKDNRARVERADGYQQLKAKLPPVSRRGL
                     ILIDPPYEMKTDYQAVVSGISEGYKRFATGTYALWYPVVLRQQIKRMIHELEATGIRK
                     ILQIELAIRPDSDQRGMTASGMIVVNPPWKLEQQMNNVLPWLHSRLAPNGHGHTSVSW
                     IVPE"
     gene            complement(3624..4067)
                     /locus_tag="OQP62_002677"
     CDS             complement(3624..4067)
                     /locus_tag="OQP62_002677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000209569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722194.1"
                     /translation="MTTLLQVIVLIFIVFFIFPGRKIFRRSKHLQDGRKLISSSSLML
                     RKFGSSRGYNADYYFDMQYLYEVADGITTAIPLTSIIEAKPGTTRVSGRSVWSVDWIT
                     AEGQRKQTRFLHNYTLFNRNFATFLKTVKQANPDACITSLTLFTL"
     gene            4345..4998
                     /locus_tag="OQP62_002678"
     CDS             4345..4998
                     /locus_tag="OQP62_002678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000469196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1722195.1"
                     /translation="MFHYGKCVVRTLFLLLVCCSLSGCLSFGLILATDKDGNRHQSTW
                     KSDTVTALSLGKDSNGKTGWVFVGEHFDYLLTQGGDNVVALLKDATIRRDKMRVKDGV
                     KFLIDTDKKEFTGEVNVTYAWVDEKDKLAAVGYGFICADGAVNCTLSVMDLKGTIHQK
                     NKEQSVTQQLSFYHPFTVEFYQYQRSMSGAKFGRVLLPVTLALDIVTMPLQLLIFSR"
     gene            5161..7203
                     /gene="prlC"
                     /locus_tag="OQP62_002679"
     CDS             5161..7203
                     /gene="prlC"
                     /locus_tag="OQP62_002679"
                     /EC_number="3.4.24.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020317218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase A"
                     /protein_id="HCS1722196.1"
                     /translation="MTNPLLTSFSLPPFSAIKPEHVVPAVTKALADCRAAVEGVVAHG
                     APYSWENLCQPLAEADDVLGRIFSPISHLNSVKNSPELREAYEQTLPLLSEYSTWVGQ
                     HEGLYNAYRDLRDGDHYATLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLS
                     ELGNQYSNNVLDATMGWTKLITDEAELAGMPESALAAAKALAEAKEQEGYLLTLDIPS
                     YLPVMTYCDNQALREEMYRAYSTRASDQGPNAGKWDNSPVMEEILALRHELAQLLGFE
                     NYAHESLATKMAENPQQVLDFLTDLAKRARPQGEKELAQLRAFAKAEFGVEELQPWDI
                     AYYSEKQKQHLYSISDEQLRPYFPENKAVNGLFEVVKRIYGITAKERTDVDVWHPEVR
                     FFELYDENNELRGSFYLDLYAREHKRGGAWMDDCVGQMRKADGTLQKPVAYLTCNFNR
                     PVNGKPALFTHDEVITLFHEFGHGLHHMLTRIETAGVSGISGVPWDAVELPSQFMENW
                     CWEPEALAFISGHYETGEPLPKELLDKMLAAKNYQAALFILRQLEFGLFDFRLHAEFN
                     PQQGAKILDTLFEIKKQVAVVPSPTWGRFPHAFSHIFAGGYAAGYYSYLWADVLAADA
                     YSRFEEEGIFNRETGQSFLDNILTRGGSEEPMELFKRFRGREPQLDAMLEHYGIKG"
     gene            7210..7968
                     /gene="rsmJ"
                     /locus_tag="OQP62_002680"
     CDS             7210..7968
                     /gene="rsmJ"
                     /locus_tag="OQP62_002680"
                     /EC_number="2.1.1.242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1516)-N(2))-methyltransferase
                     RsmJ"
                     /protein_id="HCS1722197.1"
                     /translation="MQICLMDETGATDGALSVLAARWGLEHDEDNPMALVLTPQHLEL
                     RKRDEPKLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRD
                     AFVLASVGCRVRMLERNPVVAALLDDGLTRGYADADIGGWLQERLQLIHASSLTALTD
                     ITPRPQVVYLDPMFPHRQKSALVKKEMRVFQSLVGPDLDADGLLEPARQLATKRVVVK
                     RPDYAPPLADVATPNAIVTKEHRFDIYAGTPLTE"
     gene            complement(8060..9529)
                     /gene="dtpB"
                     /locus_tag="OQP62_002681"
     CDS             complement(8060..9529)
                     /gene="dtpB"
                     /locus_tag="OQP62_002681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/tripeptide permease DtpB"
                     /protein_id="HCS1722198.1"
                     /translation="MNTTAPTGLLQQPRPFFMIFFVELWERFSYYGVQGILAVFFVKQ
                     LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTLVLGAIVLAIGYFMTGMSL
                     LNPDLIFIALGTIAVGNGLFKANPASLLSKCYQPKDPRLDGAFTLFYMSINIGSLLSL
                     SLAPVIADKFGYAVTYNLCGAGLIVALLVYFACRGMVKNIGSEPDHKPLRFRNLLLVL
                     LGTVVMIFLCAWLMHNVKIANLVLIVLSIVVTIFFFREAFRLDKTGRNKMFVAFILMI
                     EAVLFYILYAQMPTSLNFFAINNVHHEILGFAINPVSFQALNPFWVVVASPVLAAIYT
                     RLGSKGKDLTMPMKFTLGMFLCALGFLTAAAGMWFADAQGLTSPWFIVLVYLFQSLGE
                     LLISALGLAMVAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPENITDPLQTL
                     PIYTGVFSKIGLVTLAVTVVMAIMVPWLNRMINTQGTEQ"
     gene            complement(9854..10288)
                     /gene="uspA"
                     /locus_tag="OQP62_002682"
     CDS             complement(9854..10288)
                     /gene="uspA"
                     /locus_tag="OQP62_002682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspA"
                     /protein_id="HCS1722199.1"
                     /translation="MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKISLIHVDVNYS
                     DLYTGLIDVNLGDMQKRISKETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKY
                     DMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVPLRDEEE"
     gene            10676..11011
                     /gene="uspB"
                     /locus_tag="OQP62_002683"
     CDS             10676..11011
                     /gene="uspB"
                     /locus_tag="OQP62_002683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspB"
                     /protein_id="HCS1722200.1"
                     /translation="MISTVSLFWALCVVCIVNMARYFSSLRALLVVLRGCDPLLYQYV
                     DGGGFFTTHGQPNKQVRLVWYIYAQRYRDHHDEEFIRRCERVRRQFLLTSALCGLVVV
                     SLIALMIWH"
     gene            complement(11151..12647)
                     /gene="pitA"
                     /locus_tag="OQP62_002684"
     CDS             complement(11151..12647)
                     /gene="pitA"
                     /locus_tag="OQP62_002684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter PitA"
                     /protein_id="HCS1722201.1"
                     /translation="MLHLFAGLDLHTGLLLLLALAFVLFYEAINGFHDTANAVATVIY
                     TRAMRSQLAVVMAAVFNFFGVLLGGLSVAYAIVHMLPTDLLLNMGSAHGLAMVFSMLL
                     AAIIWNLGTWYFGLPASSSHTLIGAIIGIGLTNAMMTGTSVVDALNIPKVINIFGSLI
                     ISPIVGLVFAGGLIFLLRRYWSGTKKRARIHLTPAEREKKDGKKKPPFWTRIALILSA
                     IGVAFSHGANDGQKGIGLVMLVLIGVAPAGFVVNMNASSYEITRTRDAINNVETYFEQ
                     RPDLLKAVTGVDQLIPSPEPGATEPTEFHCHPANTINALNRAKGMLANVESYDKLSVE
                     QRSQLRRIMLCISDTTDKVVKLPGVSSDDQRLLKKLKTDMLSTIEYAPVWIIMAVALA
                     LGIGTMIGWRRVATTIGEKIGKKGMTYAQGMSAQMTAAVSIGLASYTGMPVSTTHVLS
                     SSVAGTMVVDGGGLQRKTVTSILMAWVFTLPAAIILSGVLYWLSLKII"
BASE COUNT         3084 a         3257 c         3468 g         2936 t
ORIGIN      
        1 gaatcctcgc ctgtatcatt gatggaacca gaggaaagca tgatgggtat gaaagagaca
       61 gttagcaata ttgtgaccag ccaggcagag aaaggaggcg ttaaacacgt ctattacgtg
      121 gcgtgcggcg gttcttatgc ggcgttctat ccggcgaaag catttttaga aaaagaagcg
      181 aaagcgttga ctgtcggtct gtataacagc ggagaattta ttaacaaccc gccggtagcg
      241 ctgggagaaa atgccgttgt ggttgtcgcc tcccacaaag gtaatacgcc agagacaatt
      301 aaagcggctg aaatcgcccg tcagcacggc gcgccggtca ttggtttaac ctggataatg
      361 gattcaccgt tggtggcgca ttgcgactat gtggaaacgt acacgtttgg cgacggtaaa
      421 gatattgccg gagagaaaac gatgaaaggc ctgctgagtg cggtcgaact gctccagcag
      481 acggaagggt atgcgcacta cgacgatttt caggatggcg tcagcaaaat caaccgtatc
      541 gtctggcgtg cttgcgagca ggtagcggag cgtgcgcagg cgttcgcgca ggaatataaa
      601 gacgataaag tcatttacac cgtcgccagc ggcgcgggct atggcgcagc ctacctacag
      661 agcatctgta tctttatgga aatgcaatgg atacattccg cctgtattca tagcggtgag
      721 tttttccacg ggccctttga aattaccgat gcgaatacgc ctttcttctt ccagttttcc
      781 gagggcaata cgcgggcggt ggatgaacgc gcgttaaact tcctgaaaaa atatggccag
      841 cgatattatc ctgaaacttt cacagaaggt gaatgcgtta ttggcgcggg atgatgttga
      901 cggtgtggtc attactcatg gcactgacac gctcgatgaa accgcctact ttcttaattt
      961 gaccgtgaaa agcgacaaac cggtggtgtt taccgctgca atgcggcccg cgtcggcaat
     1021 cagcgccgat ggcgcaagga cagccagggc tggtgtctga ctcgctcaac ccggcgaagg
     1081 cgcgggtgtt actgatgatg gcattaactc agacgcgtaa tccggaactg atccagagtt
     1141 atttcagtac gtattaatca tgaaggcctg tgcgcccacc ctcgaagatg ggcgcacaag
     1201 atattaacgc atggtcacaa actcttccga tgcggtcggg tgaatagcga cggtattatc
     1261 gaagtctttc ttggtagcgc ccatcttcag cgccactgcg aagccctgca acatttcatc
     1321 catgccgaag ccgataccgt ggatacccac aattttttct tccggcccga cgcagaccag
     1381 cttcatacgg cacggctggc ggtgcgtcgt caccgcggta tacatagcgg taaacgatga
     1441 tttatagact ttcacctgct cgtcgccgta ctgctcgcgc gcctgcggct cgcttaaccc
     1501 gacagtgccg ataggcggat ggctaaagac cacggtcggg atgttgctgt agtccagatg
     1561 ctcgtccggc ttgttgttaa acaggcgctc ggagagacgg cgaccggcgg cgacggcgac
     1621 tggcgttagt tctatcgcgc cagtattgtc gccaacggcg taaatgcctt ctacgttcgt
     1681 gttctgccat ttatcaacga tgatgtaacc tttttcattg gttttcacgc ccgctgccgc
     1741 cagattaata ttgtcggtcg acggttcgcg accaatggcc cagatcaggc aatcaacggt
     1801 ttcactgcgg ccatcttcca gttccagagt cagactgccg tcggcgtttt tcaccaccgc
     1861 tttcggcacg gcgtgagtat gcagttgcgg gccttcggcg ttcatcacct caaccagcgt
     1921 ttcgctaatc atcgggtcaa aactgcgcag cggcgcatgt ttacggacaa acagatgcgt
     1981 tttcgccccc agcgcgttga taacgccagc cagttcaacg gcgatataac ctgcgcctac
     2041 caccgcgacg cgctccggca aggcagatag cgcaaagaaa ccgtcggaat caatgccgta
     2101 ttccacgcct ggaatgctcg gatggctcgg acggccgccg gtagcgatca aaatatggtc
     2161 agcggtgatg gtttcgccgt tcacttcaat ggttttggca tcgacaaagc gggcaaagcc
     2221 tttaatcaca tctacgttat ttttgcccag cacgttgtcg tatgaagtat ggatgcggtc
     2281 aatatacgcg gtacggctgg caatcagctt gctccagtcg aactgattaa tcgtggtgtc
     2341 aaaaccgtag tccgggccat acagatgaat cgcttcacga atctgcgcgg catgccacat
     2401 cactttcttc ggcacgcagc ccacgttaac acaggtgccg cccagctctt tggcttcgat
     2461 gagcgcgcat ttctggccgt acatagcggc gcggttaatc gaggcgatac cgccgctgcc
     2521 gccgccgata gcgatgtaat catagtgttt ggtcatgacc gctcctttat gttcgttgtc
     2581 ggacggatag attctgcgct acccgccaaa atattcgcga ttgtatacct gaaggtgaaa
     2641 ggttccaccg atggctgtga ttactccggc acgatccagc ttaccgaagt gtgtccgtga
     2701 ccgtttggcg ccaacctgct gtgcagccac ggtagcacgt tgttcatctg ctgctccagt
     2761 ttccacggcg ggttaaccac gatcataccg gacgccgtca tcccgcgctg atcgctgtcc
     2821 gggcggatcg ccagctcaat ttgcaggatt ttacggatgc cggtggcctc cagctcatga
     2881 atcatgcgct taatttgctg gcggagtacc accggatacc atagcgcgta tgtaccggtg
     2941 gcgaaacgtt tataaccctc gctgatgccg ctgactaccg cctggtaatc ggttttcatt
     3001 tcataaggcg ggtcaatgag aatcagaccg cggcgggaaa ccggcggcaa tttggctttc
     3061 agttgctgat agccgtcagc gcgttccacg cgggcgcggt tgtctttttg aaactccgcg
     3121 cgcaacagtg ggaagtcgct gggatgcaat tccgtgagtt gcagactgtc ctgctcacgc
     3181 agcaactggc gggcgattaa cggggagccc ggatagtagc gtaactgccc gctgcggttg
     3241 aaatgtttta cgacgctaat atacggttcc agttcggcgg gcagatcgtc ctgctgccag
     3301 atacgggcga tgccttccag atactctccg gtacgttcag catgttcgct gcccaactga
     3361 taacgccccg cgcccgcgtg cgtgtccaga tagagaaacg gtttttcttt ctcttttagc
     3421 gactcgatga tcaggctctg aacggtatgt ttaaggacgt cggcgtggtt gccagcgtga
     3481 aagctgtgac gataactgag catggatgca gatattccgg gaagtaaaca agttagccga
     3541 tagtttaccg cagatccgta gagattaccg ctcttgcgct tttatcgccg ttggccagga
     3601 ggaaaaacaa gtaggctgtg gcgtcagagc gtaaataacg tcaacgaagt gatgcaggcg
     3661 tctggattgg cctgtttcac ggtcttaagg aaggtggcaa aatttcgatt gaatagggtg
     3721 tagttatgaa ggaagcgcgt ctgttttctt tgcccttccg ctgttatcca gtcgactgac
     3781 cagactgaac gaccactgac tctcgttgtt cccggtttcg cctcaataat gctggtgagt
     3841 ggtatcgcgg tggtgatacc gtccgcgacc tcatagaggt actgcatgtc aaagtagtaa
     3901 tccgcgttat agccgcgaga actgccaaat tttcgcagca tcagcgaaga agatgaaatt
     3961 aatttacggc catcttgcag atgcttactc cgacggaaaa tttttcgccc agggaaaata
     4021 aagaaaacaa taaatatcag tacaataacc tgtaataacg tggtcatata caatccttgt
     4081 attccagaaa cgaaaaagtt gagaatatta tacatgggca gtttgcgcaa aaatgacagc
     4141 gattgatgtc acggccctgt tttcagaaaa acacccatga aaagcctatc tgaatttaac
     4201 gctaatcatg ccgcgacgcg tccaccgact tacccctgtc gggtcttatt ctgaaatcgt
     4261 ttttattatg atgatagtgc tggttttacc ttgtttattt gattaaaacg atagcgctaa
     4321 taatagaaaa gaaaggattc attgatgttc cattatggaa aatgtgtcgt tcgcacgttg
     4381 tttttattac tggtttgctg ttcgctgtcg ggctgtcttt catttgggct gatacttgcc
     4441 accgataaag atggcaatcg tcatcagtct acctggaaat cggataccgt taccgcgctt
     4501 tccttaggta aagatagcaa cgggaaaacg ggctgggtgt ttgttggcga acattttgac
     4561 tacctgttga cccagggcgg cgataatgtg gtggcgctgt taaaagatgc gactattcgc
     4621 cgggataaaa tgcgagtaaa ggatggtgtt aaattcctga ttgatacaga taagaaggag
     4681 tttacgggtg aagtcaatgt gacttacgcc tgggtggacg agaaagataa actggcggcg
     4741 gtaggctacg ggtttatttg tgcagacggc gcggtaaatt gcacgctatc cgtcatggac
     4801 ctgaaaggga ctatccatca gaaaaataaa gagcagagcg ttacgcagca gctatcgttc
     4861 tatcatcctt tcaccgttga gttctatcag tatcagcgca gtatgtccgg ggcaaaattt
     4921 ggcagagtgt tgctgccggt aactttggcg ctggatattg tcactatgcc gctacagcta
     4981 ctgatcttca gtcgttaaaa ttggattcag cagcaatgcc tacgttcgga tgctggcgtt
     5041 gctgcacggg tgaaatgagc gcccaccatc attgaaattc ccccaactat cccccattct
     5101 agatccatag cgaaagcgcg atagagcgct tcatttcttt tttagaccag gactgcgcat
     5161 atgaccaatc cattactaac gtctttttca ctgccgcctt tttctgcaat taaaccggag
     5221 catgtggtgc ctgcggtcac caaagcgttg gccgattgcc gggcggcggt agaaggcgtt
     5281 gtggcgcatg gcgcgccgta tagctgggaa aacctctgcc agccgttggc ggaagccgac
     5341 gatgttctgg ggcgtatttt ctcgccaatt agccacttaa actcggtgaa aaatagcccg
     5401 gagctgcgtg aagcctacga acagacgtta ccgctgctgt cggaatacag cacctgggtt
     5461 gggcaacatg aaggactgta caacgcgtac cgcgacctgc gcgacggcga tcattacgcc
     5521 actctgaata ccgcgcagaa gaaagcggtt gataacgcgc tgcgtgattt tgaactgtcc
     5581 ggcatcggcc tgccgaaaga gaaacagcag cgttacggtg aaattgccac ccgcctgtct
     5641 gagctgggca accagtacag caataatgtg ctcgatgcca ccatgggctg gacgaagctc
     5701 atcaccgacg aagccgagct ggcgggaatg ccggaaagcg cgctcgccgc cgctaaagcc
     5761 ctggcggaag ccaaagagca ggaaggttac ctgctgactc tggatatccc gagctatctg
     5821 ccagtgatga cctactgcga caaccaggcg ttgcgtgaag agatgtatcg cgcctattcc
     5881 actcgtgcct ccgatcaggg gccgaacgcc ggtaagtggg ataacagccc ggtgatggaa
     5941 gaaattcttg cgctgcgcca tgaactggcg caactgctgg gcttcgaaaa ttatgcccat
     6001 gagtcactgg ccaccaagat ggcggaaaat ccgcagcagg tgctcgattt cttaaccgat
     6061 ctggcgaaac gcgcccgtcc gcagggggaa aaagagctgg cccagctgcg cgccttcgcc
     6121 aaagccgaat ttggcgttga ggaactgcaa ccatgggata tcgcgtacta cagtgaaaag
     6181 caaaaacagc acctgtacag catcagcgat gagcagctac gcccgtactt cccggaaaac
     6241 aaagccgtga acggcctgtt tgaagtggtg aaacgtattt acggcatcac cgccaaagag
     6301 cgtactgatg ttgatgtctg gcacccggag gtgcgtttct tcgaactgta tgacgaaaat
     6361 aacgagctgc gcggcagctt ctaccttgac ctgtacgcgc gcgaacacaa acgcggcggg
     6421 gcgtggatgg acgactgtgt cggccagatg cgtaaagcgg atggcacatt gcaaaagccg
     6481 gtcgcttatc tgacctgtaa tttcaaccgt ccggtgaacg gtaaacccgc tctgtttacc
     6541 catgacgaag tgatcaccct gttccacgag tttggtcatg gcctgcatca tatgctgacc
     6601 cgcattgaga ccgccggggt ctccggtatc agcggcgtgc cgtgggatgc ggtcgaactg
     6661 ccaagtcagt ttatggaaaa ctggtgctgg gagccagaag cgctggcgtt tatctccggc
     6721 cactatgaga ccggcgaacc gctgccgaag gaactgctgg ataaaatgct ggcggcgaaa
     6781 aactatcagg cggcgctgtt tattctgcgt cagctggagt tcggtctgtt tgatttccgt
     6841 ctgcatgcgg aatttaaccc gcagcaagga gcgaaaattc ttgatacgct ctttgaaatt
     6901 aaaaaacagg tcgccgtggt gccgtcaccg acatggggcc gtttcccaca tgcgttcagc
     6961 catatctttg ctggcggcta tgcggcaggc tactacagct atctgtgggc cgacgtactg
     7021 gcggcggacg cttattctcg ctttgaggag gaaggcattt tcaaccgtga gaccggtcag
     7081 tcgttccttg ataacatcct gactcgcggt ggttctgaag agccgatgga actctttaaa
     7141 cgcttccgtg gccgtgaacc acagctggac gcgatgctgg agcattacgg gattaaaggc
     7201 tgattttacg tgcaaatctg cttaatggat gaaacgggcg ccacagacgg cgccttatct
     7261 gttctggctg cccgctgggg actggagcat gacgaagaca acccgatggc gctggtattg
     7321 acgccgcaac atctggagct gcgcaagcgc gacgaaccga agctcggcgg catttttgtc
     7381 gattttgtcg gcggcgcgat ggcgcaccgg cgcaagttcg gcggcgggcg cggcgaagcg
     7441 gtggcgaaag ccgtcggtat caaaggcgat tacctgccgg atgtggttga tgccacggcc
     7501 ggactggggc gcgatgcgtt tgtgctggcg tccgtcggtt gccgcgtgcg gatgctggag
     7561 cgtaatccgg tggtcgccgc gttgctcgac gacggcctga cgcgcggcta cgccgatgcg
     7621 gacattggcg gctggcttca ggagcgtttg cagttgattc atgcttccag cctgacggcg
     7681 ttaaccgata tcacgccgcg cccgcaggtg gtctacctcg atccgatgtt tcctcaccgg
     7741 cagaaaagcg cgctggtgaa gaaagagatg cgggtgtttc agtcgctggt ggggccggat
     7801 ctcgacgccg acggactgct ggaaccggcg cgtcagttgg cgaccaaacg cgtggtggtc
     7861 aaacgtcccg attatgcgcc gccgctggcg gatgtcgcga cgcccaacgc catcgtcacc
     7921 aaagagcatc ggtttgatat ttatgccgga acccctctga cggagtaacg gattgcccga
     7981 tggcgctacg cttatcgggc ctacgattct caattatttg taggccggat aaggcgtaag
     8041 ccgcatccgg cactgagtat tactgttcgg taccttgcgt attaatcatt cggtttaacc
     8101 acggcaccat aatggccatc accacggtga ccgccagcgt taccagacca attttgctaa
     8161 agacgccggt ataaatgggc agcgtctgta acggatcggt gatgttttcc ggtacggcag
     8221 tgaaggtcgc cacataaccg ccgagcagga aggcggcggc ctgggtcagg aaccacattc
     8281 ccagaataaa gcccatcaga tgctgcggca ccagagcggc gaccattgcc agtcccagcg
     8341 cgctaatcag caactcgccc agactctgga acagatacac tagcacgata aaccacggcg
     8401 acgtcaatcc ttgcgcatcg gcaaaccaca tcccggcggc ggcggtcaga aaacccagcg
     8461 cgcagaggaa catgccgagc gtaaacttca tcggcatagt cagatctttg cctttgctac
     8521 ccagtcgggt gtaaatcgct gccagtaccg gactggcgac gaccacccag aatgggttca
     8581 gcgcctgaaa actcaccggg ttaatggcga atccaagaat ttcatgatgc acgttattaa
     8641 tcgcaaagaa gttcagtgag gtaggcatct gcgcatacag aatgtaaaac agcacggctt
     8701 caatcatcag aataaacgcc acgaacattt tattgcggcc ggttttatcc agacgaaacg
     8761 cttcgcgaaa gaagaaaata gtgacgacga tagaaaggac gatgagcacc agattggcaa
     8821 tcttaacgtt gtgcatcagc caggcgcaga ggaaaatcat gacgacggtg ccgagtagta
     8881 ccagcagcaa attgcgaaaa cgtagcggtt tatgatccgg ttcagaaccg atatttttca
     8941 ccatgccacg gcaggcgaag tacaccagaa gcgcaacaat taaaccagcg ccgcacagat
     9001 tataggtcac cgcatagcca aatttatcgg caatcaccgg cgccagcgat agcgataaca
     9061 aagaaccgat gttaatcgac atataaaaca gggtgaaagc gccatccagc cggggatctt
     9121 taggctgata gcatttagag agcaggctgg cgggattggc tttaaataac ccgttgccca
     9181 cggcaatcgt acccagtgcg ataaaaatca gatcgggatt taatagcgac ataccagtca
     9241 taaaatagcc aatcgccagc acaatcgcgc ccaggaccag ggtgcgttta gtccctaaca
     9301 gatggtcgcc aacatagccg ccgatggaga tcaggccata aaccagcgcc gcaaaagcgc
     9361 caaaagtaat aaaggcctgt tcctgagaaa aacccaattg tttaacgaaa aagaccgcca
     9421 ggatgccctg gacgccgtaa tagctaaatc gttcccataa ttctacaaaa aagatcatga
     9481 agaatggacg aggttgctgc agcaagcccg taggtgcagt tgtattcata ttccttcgcc
     9541 ttttaatgcc atcccgaaac gtatgaacgc gtatatcaaa acgcgccgaa aagtcttacc
     9601 ctgatataga ctgcggttat tagcctgatc aataggttat tatacaaatg atacgcaaac
     9661 taattagtgg atcacactaa ttatgtttgg tgtgatggaa tgatgtactg agtactgcga
     9721 agaagggggg ataaacaaaa cgcccacata agcgggcgtt gttgttgata gccggagttt
     9781 gcctgatggt tcaggccaac ctgattgact atagaccaga tgcggtctta gccgccagcc
     9841 ggcacggtaa gtattactct tcttcgtcgc gcagcggaac aatcagcatg tcaacgtgaa
     9901 cggtgttgat cagctggcgc gcagaagaca tcagtttgct ccagaagtcc tggtgatgac
     9961 cgcaaacgac cagatccata tcgtatttct tgatggcgtc aaccagcacc tggcccaaat
    10021 cgccgctacc gctcagggtt tcagtgatag ggtagccagc gttggtagac agctcggtca
    10081 gcgcgtggtg ggtttctttg gagatacgtt tctgcatatc gcccagattg acgtcaatca
    10141 gaccggtgta caggtctgaa tagttcacat caacgtggat gagggagatt ttcgcgttgt
    10201 aggggcgcgc catagagacc gctttttcaa ccagaacttt actttccggg gagagatcaa
    10261 ctgcgataag aatgtgttta taagccatag tgttactcct tccataagtt gtcgatgacc
    10321 attgagctac tggcgtttct tatgccgccg cgtcacccgc gtcctgcgaa ctctatgcgc
    10381 ggggctagct cagccgttta ccataactat ccttacatta tagcgaccag gataatccgt
    10441 caatctgcct tgcttgccag ttagttaaac aaaattttca gggaattgca ttgatagtga
    10501 ttaaccttct ggtaaaaaaa ttaactgatc tcctacaatg tgtataagag ccgttcgaat
    10561 gcggagcgct aatatggacg gctttcgtag tactctttca ctgattgtct ggcagggtat
    10621 cggggagcgg tagtcccgga gaggaactcc gtgggcgggt cgccggggag gagatatgat
    10681 aagcaccgtc tcactattct gggctttatg tgtcgtttgc attgttaata tggcgcgcta
    10741 tttctcatcg ctacgcgcac tgttagtggt acttcgtggt tgcgatcctt tgctctatca
    10801 atatgtcgat ggcggcggct tctttaccac gcatggtcag cccaacaaac aggtgcgcct
    10861 ggtatggtat atctacgctc agcgctatcg cgatcatcat gatgaagaat ttattcgccg
    10921 ttgtgaacgc gtgcgccgcc agtttctgct gaccagcgcg ttatgcggtt tggtggtggt
    10981 gagcttgatt gcgctcatga tttggcactg aataaaaaaa gcgggccagt ttcctgaccc
    11041 gctcgtatta gataagcctc cggatgacgc cgcttgtagc ggcctgtcag gcctgtgtcg
    11101 tttcatcctg acaggccgga ttagcgacag cgctatccgg cccatttggc ttaaataatc
    11161 ttcagggaaa gccagtacag cacgccggaa agaataatcg ccgccggtaa cgtaaatacc
    11221 caggccatca gaatgctggt cacggtttta cgctgtaacc cgccgccatc aacgaccatg
    11281 gttcccgcca ctgaagagga gagtacgtga gtggtagaaa ctggcatacc ggtgtagctg
    11341 gcaagaccga tagagactgc cgccgtcatc tgcgccgaca ttccctgcgc atacgtcatg
    11401 ccttttttac caattttctc gccgatagtg gtcgccacgc gacgccagcc gatcatcgta
    11461 ccaataccca gcgccaacgc cactgccata atgatccaca ccggcgcata ctcaatggtg
    11521 cttaacatat cggtcttcag ctttttcagc aggcgctggt catcgctgct tacgccaggc
    11581 aatttcacga ctttgtcggt cgtgtcggaa atgcacagca taatgcgacg caactgacta
    11641 cgctgttcaa cgcttaactt gtcgtagctt tccacgtttg ccagcatccc tttcgcacgg
    11701 ttaagcgcgt taatggtgtt agccggatgg cagtggaatt cagtcggttc agtcgcgccc
    11761 ggttccggag agggaatcag ttggtcaacg ccggtgacgg ctttcagcag gtcaggacgc
    11821 tgctcaaagt acgtttcgac attgttgata gcatcgcgcg tacgggtgat ttcgtagctg
    11881 gaggcattca tattgaccac gaaacccgca ggcgcgacgc caatcagcac cagcatgacc
    11941 aggccaatgc ctttctgacc atcgttcgcg ccatgcgaaa acgccacgcc gatagctgag
    12001 aggatcagcg cgatacgcgt ccagaatggc ggctttttct tgccgtcttt cttttcacgt
    12061 tcggctggcg tcaggtggat acgggcgcgt ttcttagtac cgctccagta gcggcgcagc
    12121 aagaaaatca gaccgccggc gaataccaga ccgacaatag gggagataat gagtgaaccg
    12181 aaaatattga taactttcgg gatgttaagc gcatccacca ctgacgtgcc ggtcatcatc
    12241 gcattggtta aaccgatgcc gataatggcg ccaatcagcg tgtgggaact ggacgccggc
    12301 aacccgaaat accaggtacc gaggttccag ataatcgccg ccagcaacat ggaaaagacc
    12361 atagcgaggc cgtgcgcgga acccatgttg agcaggagat ccgtcggtag catatgcaca
    12421 atggcatacg ccacgctgag accccccagc aaaacgccaa aaaagttaaa caccgccgcc
    12481 atgacaaccg ccagctgcga acgcatcgca cgggtgtaaa tcacggttgc gactgcattg
    12541 gctgtatcat ggaaaccgtt aatcgcttcg tagaacagca caaaagccag agcaagcaat
    12601 aataaaagcc cggtatgtaa atccaggcca gcaaacaaat gtagcatagg acgttacgcc
    12661 attttgagga catgaacgcg gcgcattatc agtgactttg gcggcgcggg caaagtgaaa
    12721 tatagacttt ttttgatgta cttcg
//
LOCUS       DAJVSD010000119        12707 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.119, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000119 DAJVSD010000000
VERSION     DAJVSD010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 12707)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12707)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12707
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.119"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            229..1746
                     /gene="caiT"
                     /locus_tag="OQP62_002685"
     CDS             229..1746
                     /gene="caiT"
                     /locus_tag="OQP62_002685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-carnitine/gamma-butyrobetaine antiport BCCT
                     transporter"
                     /protein_id="HCS1722202.1"
                     /translation="MKNEKRKSGIEPKVFFPLLIIVGILCWLTVRDLDAANVVINAVF
                     SYVTNVWGWAFEWYMVVMLFSWFWLVFGPYAKKRLGDEKPEFSTASWIFMMFASCTSA
                     AVLFWGSIEIYYYISTPPFGLEPNSTGAKEIGLAYSLFHWGPLPWATYSFLSVAFAYF
                     FFVRKMDVIRPSSTLVPLVGEKHAKGLFSTIVDNFYLVALIFAMGTSLGLATPLVTEC
                     MQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIV
                     SGASFIMNYFTDSVGMLLMHLPRMLFYTDAIGKGGFPQGWTVFYWAWWVIYAIQMSIF
                     LARISRGRTVRELCFGMVMGLTASTWILWTVLGSNTLLLMDKNILNIPQLIEQHGVAR
                     AIIETWAALPLSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRDGEEPPLLVRI
                     GWSVLVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKVHWKDK"
     gene            1781..2923
                     /gene="caiA"
                     /locus_tag="OQP62_002686"
     CDS             1781..2923
                     /gene="caiA"
                     /locus_tag="OQP62_002686"
                     /EC_number="1.3.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crotonobetainyl-CoA dehydrogenase"
                     /protein_id="HCS1722203.1"
                     /translation="MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVK
                     ALADMGIDSLLIPEEHGGLEAGFVTVAAVWMELGRLGAPTYVLYQLPGGFNTFLREGT
                     QEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRKNGKVYLNGSKCFITSSA
                     YTPYIVVMARDGASPDKPVYTEWFVDMSKAGIKVNKLEKLGLRMDSCCEITFDDVELD
                     EKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCTFEDAARYANQRVQFGEAIGRF
                     QLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQ
                     VLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR"
     gene            3035..4252
                     /gene="caiB"
                     /locus_tag="OQP62_002687"
     CDS             3035..4252
                     /gene="caiB"
                     /locus_tag="OQP62_002687"
                     /EC_number="2.8.3.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-carnitine CoA-transferase"
                     /protein_id="HCS1722204.1"
                     /translation="MNHLPMPTFGPLAGVRVVFSGIEIAGPFAGQMFAEWGAEVIWIE
                     NVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFA
                     RRGITDEVLWEHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQP
                     MPAFPYTADYFSGMTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNG
                     GEICPRMTKGKDPYYAGCGLYKCADGYIVMELVGITQINECFKDIGLAHILGTPEVPE
                     GTQLIHRVECPYGPLVEEKLDAWLAAHTIADVQARFAELNIACAKVLTIPELEGNPQY
                     VARESITQWQTMDGRTCKGPNIMPKFKNNPGKIWRGMPSHGMDTAAILKNIGYSEADI
                     KELVGKGLAKVED"
     gene            4315..5868
                     /gene="caiC"
                     /locus_tag="OQP62_002688"
     CDS             4315..5868
                     /gene="caiC"
                     /locus_tag="OQP62_002688"
                     /EC_number="6.2.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crotonobetaine/carnitine-CoA ligase"
                     /protein_id="HCS1722205.1"
                     /translation="MDIVGGQNLRQMWDDLAGMYGDKTALIFESCEGIVRQFSYASLN
                     EEINRTANLFYYLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLGEESA
                     WILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFSQLQARQ
                     SATLCYTPALSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDDVYM
                     TVMPAFHIDCQCTAAMPAFSAGSTFVLLEKYSARAFWDQVRKYQATVTECIPMMIRTL
                     MVQPATPTDRQHHLREVMFYLNLSAQEKDAFTERFGVRLLTSYGMTETIVGIIGDRPG
                     DKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATAR
                     ALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIV
                     VVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCS
                     GKIIKKNLK"
     gene            5922..6707
                     /gene="caiD"
                     /locus_tag="OQP62_002689"
     CDS             5922..6707
                     /gene="caiD"
                     /locus_tag="OQP62_002689"
                     /EC_number="4.2.1.149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crotonobetainyl-CoA hydratase"
                     /protein_id="HCS1722206.1"
                     /translation="MSESLHLTRNGPILEITLDRPKANAIDAKTSFAMGEAFLNFRDD
                     PELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVN
                     GYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVM
                     TGRRMSAEEALRWGIVNRVVSQSELMESARELAQQLVNSAPLAIAALKEIYRATSEMP
                     VEEGYRYIRSGVLKHYPSVLHSEDALEGPQAFAEKRAPVWKGR"
     gene            6819..7415
                     /gene="caiE"
                     /locus_tag="OQP62_002690"
     CDS             6819..7415
                     /gene="caiE"
                     /locus_tag="OQP62_002690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carnitine operon protein CaiE"
                     /protein_id="HCS1722207.1"
                     /translation="MSYYAFEGLIPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLR
                     GDYGRLILEAGSNLQDGCIMHGYCDTDTIVHENGHIGHGAILHGCVVGRDALVGMNSV
                     IMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKRLNTKEYQ
                     DLAIRCRTGLSETKPLTQVEENRPRLKGTTDVKPKSAQ"
     gene            complement(7493..7888)
                     /gene="caiF"
                     /locus_tag="OQP62_002691"
     CDS             complement(7493..7888)
                     /gene="caiF"
                     /locus_tag="OQP62_002691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carnitine metabolism transcriptional regulator
                     CaiF"
                     /protein_id="HCS1722208.1"
                     /translation="MCEKYVERPLYLLIADWMMAENRWITAREISRQFDIEHCKAINT
                     LSYILSEVGEIVCEVKMIPNQIAGRGCQCQRLVKVVSIDSQLYRRLNHNLQERKVSVA
                     KAPRLSAVPPTELNREQKWQMMLSKSMRR"
     gene            complement(8162..11389)
                     /gene="carB"
                     /locus_tag="OQP62_002692"
     CDS             complement(8162..11389)
                     /gene="carB"
                     /locus_tag="OQP62_002692"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HCS1722209.1"
                     /translation="MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRV
                     ILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL
                     ERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGIAHTMEEALAVAA
                     DVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYEM
                     EVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIG
                     VETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDE
                     LMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQ
                     ESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVD
                     GVFNLTNIDRWFLVQIEELVRLEEKVTEVGITGLNADFLRQLKRKGFADARLAKLAGV
                     REGEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEDECEANPSVDRDKIMVLG
                     GGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLE
                     DVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAV
                     DRLKLKQPANATVTAIEQAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQT
                     AVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPA
                     YTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKDNEVYLIEVNPRAARTVPFVSKA
                     TGVPLAKVAARVMAGKSLTEQGVTQEIIPPYYSVKEVVLPFNKFPGVDPLLGPEMRST
                     GEVMGVGRTFAEAFAKAQLGSNSTMKKQGRALLSVREGDKERVVDLAAKLLKQGFELD
                     ATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTAGRRAIEDSRVIR
                     RSALQYKVHYDTTLNGGFATTMALNADATEKVTSVQEMHAQIKKS"
     gene            complement(11405..12553)
                     /gene="carA"
                     /locus_tag="OQP62_002693"
     CDS             complement(11405..12553)
                     /gene="carA"
                     /locus_tag="OQP62_002693"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HCS1722210.1"
                     /translation="MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILT
                     DPSYSRQIVTLTYPHIGNVGTNEADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYL
                     KRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDSPDAKLALEKAKAFPGLNGMDLAK
                     EVTTAETYRWTQGSWTLKDGLPEAKSEDDLPFHVVAYDFGAKRNILRMLVDRGCRLTV
                     VPAQTSAEEVLKMNPDGIFLSNGPGDPAPCDYAIEAIKKFLQTDIPVFGICLGHQLLA
                     LASGAKTVKMKFGHHGGNHPVKDMDRNVVMITAQNHGFAVDEDSLPANLRVTHKSLFD
                     GTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIKHYRSSAK"
BASE COUNT         2883 a         3396 c         3442 g         2986 t
ORIGIN      
        1 accaacagat tgataaataa agaaaaaatc aaaatttaaa cacaaaataa tcaacgcaaa
       61 aaagtgtgac acagataaca gaatcacccg aaatgaatac ccattatgag ttactcattg
      121 aggcgtccca gaggttaaaa acttatcaac aaatcattaa taataaataa acaaacgttc
      181 atgaactggc acgctaaata aatttcgttt tcacactgga attcacttat gaaaaatgaa
      241 aagagaaaat cgggaattga accgaaggtt ttttttccgc tattaataat tgtcgggata
      301 ctttgctggc taacagtcag agatcttgat gccgctaacg tcgttattaa tgcggtattc
      361 agttatgtca ccaacgtctg gggttgggca tttgaatggt atatggtcgt catgctcttc
      421 agctggttct ggctggtttt tggcccctat gccaaaaaga gattaggtga cgaaaaaccg
      481 gagtttagca ccgccagctg gattttcatg atgttcgcct cctgtacatc cgctgcggtt
      541 ctgttctggg gctctattga gatctactac tatatctcca ccccgccgtt cggcctggaa
      601 cccaattcca cgggcgcgaa agagataggc ctggcgtaca gcctgttcca ctgggggccg
      661 ctaccgtggg caacctatag cttcctttcc gtggccttcg cctacttctt ctttgtacgc
      721 aagatggatg tcatccgccc cagctccacg ctggtaccgc tcgtcggtga aaagcatgcg
      781 aaagggttgt tcagtaccat cgtcgataac ttctacctgg tggcgctgat cttcgcgatg
      841 ggcaccagcc tcggtctggc taccccgctg gtcaccgagt gtatgcaatg gctgttcggt
      901 attccgcata cgctgcaatt ggatgccatc atcattacct gctggatcat tctgaacgcg
      961 atttgcgtgg cctgcggcct gcaaaaaggg gtcagaatcg ccagcgatgt gcgtagctac
     1021 ctgagcttcc tgatgctcgg ctgggtgttt atcgtcagcg gcgccagctt catcatgaac
     1081 tacttcaccg actccgtcgg gatgctgtta atgcacctgc cacggatgct gttctatacc
     1141 gacgccatcg gtaaaggcgg cttcccacag ggctggaccg ttttctactg ggcgtggtgg
     1201 gttatttacg ccatccagat gagtatcttc ctggcccgta tttcccgtgg tcgtaccgta
     1261 cgtgaactgt gcttcgggat ggtgatgggt ctgaccgcgt ctacctggat cctgtggaca
     1321 gtccttggca gtaacacgct gctgctgatg gataaaaaca tcctcaacat cccgcaactg
     1381 attgagcaac acggcgtggc gcgcgccatt atcgaaacct gggcagcctt gccgctcagc
     1441 accgccacca tgtggggctt cttcatcctc tgctttattg ccaccgtcac gctgattaac
     1501 gcctgctctt acaccctggc gatgtcgacc tgtcgcgaag ttcgcgatgg tgaagagccg
     1561 cctctgttag tacgcatcgg ctggtcggtg ctggtcggca tcatcggtat cgttctgctg
     1621 gcgctgggtg ggttgaagcc gattcagacc gcgattatcg ccggaggatg cccgctgttc
     1681 ttcgtcaaca ttatggtgac gctgtccttt attaaagacg ccaaagtgca ctggaaagac
     1741 aagtaattct tattaaccca attgatcaag aggctgaaag atggatttca acttaaatga
     1801 cgaacaggag ctgtttgtcg ccggtattcg cgaactgatg gccagtgaga actgggaagc
     1861 ttattttgcc gagtgcgatc gtgacagcgt ctaccctgag cgttttgtaa aagcgctggc
     1921 ggatatgggt attgatagcc tgctgatccc ggaagaacac ggcggtctgg aagcgggttt
     1981 tgttaccgtc gccgccgtct ggatggaact gggacgtctt ggcgcgccaa cttacgtgtt
     2041 gtaccaattg ccgggaggtt ttaacacttt cctgcgtgaa gggactcagg agcaaattga
     2101 taaaatcatg gcgttccggg gcaccggtaa gcagatgtgg aactctgcta tcaccgaacc
     2161 gggagcggga tcggatgttg gtagtctgaa aaccacttat acacgcaaaa atggtaaggt
     2221 ttatctcaat ggcagtaagt gctttatcac cagtagcgcc tataccccgt acatcgtggt
     2281 catggcgaga gacggtgcat cgccggataa accggtttac accgagtggt ttgtggacat
     2341 gagcaaagcg ggtatcaagg tcaacaaact ggagaaactc ggtctgcgca tggatagctg
     2401 ctgtgaaatc acctttgacg acgttgaact ggacgagaaa gacatgttcg gtcgggaagg
     2461 taacggcttc aaccgcgtga aagaagagtt tgaccatgaa cgcttcctcg tcgcgctgac
     2521 caactacggt accgcaatgt gcacttttga agacgctgcg cgttacgcta atcagcgcgt
     2581 gcagtttggt gaagctattg gccgtttcca gctgattcag gagaagtttg cgcatatggc
     2641 gatcaaactg aactccatga aaaatatgct gctggaagcc gcgtggaaag cagataacgg
     2701 cactattacc tccggcgacg cggccatgtg caaatacttc tgcgccaacg ccgcgtttga
     2761 agtggtagac accgccatgc aggtactggg aggtgttggt atcgcgggca accaccgcat
     2821 cacgcgtttc tggcgtgacc tgcgcgttga ccgtgtttct ggtggttctg acgaaatgca
     2881 gatcctgacg ttgggtcgtg cggtactcaa gcaataccgc taatcgatcc cttgtaggcc
     2941 tgataagacg cggggcgtcg ccatcaggca atcatgccgg atggcgctgt gcttatccgg
     3001 cctacatacc gcaaaaaatg ccaggagaaa aacgatgaat catttaccaa tgccaacctt
     3061 tggtcctctt gctggggtac gcgttgtttt ttcagggatc gaaatcgccg gtccgttcgc
     3121 cggacagatg ttcgccgaat ggggcgccga ggttatctgg attgaaaacg tcgcatgggc
     3181 cgataccatc cgcgtacagc ctaactaccc gcagctctca cgccgcaacc tgcacgccct
     3241 gtcgctgaat attttcaaag atgaaggtcg ggaagcgttt ctgaaactga tggaaaccac
     3301 cgatattttc attgaagcca gtaaaggccc ggcctttgcc cgccgtggta ttactgatga
     3361 agtgctgtgg gaacataacc cgaaactggt cattgcccac ctttccggct tcggccagta
     3421 tggtaccgag gagtacacca atcttccggc gtataacacc atcgcgcagg cattcagtgg
     3481 ttatctgatc caaaacggcg acgttgacca accgatgcca gccttcccgt ataccgccga
     3541 ttacttctcc gggatgaccg cgacgacagc cgcgctggca gccctgcaca aagtacgcga
     3601 aacgggtaaa ggtgaaagca tcgatatcgc catgtacgaa gtgatgctgc gcatgggtca
     3661 gtatttcatg atggactact tcaacggcgg cgaaatctgt ccacgtatga cgaaagggaa
     3721 agacccctac tacgccggtt gcggcctgta taaatgcgcc gatggttaca tcgtcatgga
     3781 gttggtcggc atcacgcaaa tcaacgagtg ttttaaagat attggcctgg cgcacattct
     3841 cggtacgccg gaagttccgg aaggcacgca gctcatccat cgcgtggaat gcccttacgg
     3901 cccgctcgtc gaagagaaac tggacgcctg gctggcagca cataccatcg ccgacgttca
     3961 ggcgcgtttt gctgagctga atatcgcctg tgcgaaggtg ctcaccattc cggaactgga
     4021 aggtaacccg cagtacgttg cccgcgaatc gattactcag tggcaaacaa tggacggtcg
     4081 cacctgtaaa gggccgaaca tcatgccgaa atttaaaaac aacccgggga aaatctggcg
     4141 tggcatgcca tcacacggca tggataccgc cgccattctg aaaaacattg gttatagcga
     4201 agcagatatt aaggaactgg tcggcaaagg cctggccaaa gttgaggatt aaacgcgatg
     4261 cgctactcgg ttttccggtt agcgctcacg cctgatttca gtggataaag caatatggat
     4321 atcgttggcg gacaaaactt acgtcagatg tgggacgacc tggccgggat gtacggagat
     4381 aaaacggcgt taattttcga atcctgtgag ggaatcgttc ggcagtttag ctatgcttcg
     4441 ctcaatgaag agattaaccg cacggcgaac cttttttatt acttagggat ccgcaagggt
     4501 gatagggtcg cgctgcatct ggataactgt ccggaattca tcttttgctg gtttggactg
     4561 gcaaaaatcg gcgccattat ggtgccgatt aatgcccgct tactgggcga agaaagcgcc
     4621 tggatcctgc aaaacagcca ggtgagtctg ctggttacca gcgcccagtt ttatcctatg
     4681 taccgtgaaa tacgccagga caatagcact ccgcttaatc atatctgtct gattggcgag
     4741 cagcttccgg ctgacgacgg cgtgagccac ttttcccaac tacaagcacg ccagtcggcc
     4801 acgctgtgct atacgcccgc gttatccact gacgatacgg cggaaattct gtttacctcc
     4861 ggtaccacct cgcgtccaaa aggggtggtg attacccact ataacctgcg ctttgcaggc
     4921 tattactctg cctggcaaat cgccctgcgc gatgatgacg tgtacatgac ggtgatgccc
     4981 gcttttcata tcgactgcca gtgtaccgcc gcaatgccag ccttttccgc cggcagcacc
     5041 tttgtgctcc tggagaagta cagcgccagg gccttctggg atcaggtacg taaatatcag
     5101 gcgacggtga ccgagtgcat cccgatgatg atccgcacgc tgatggtcca gcccgccacg
     5161 ccaacggaca ggcagcatca tctgcgcgaa gtgatgttct atctcaattt atccgcgcag
     5221 gaaaaagacg cctttaccga acgctttggc gtcaggctgc tgacctctta tggtatgact
     5281 gaaaccattg tcggaattat tggcgaccgt cccggagaca aacgacgctg gccttccatt
     5341 ggtcgcgtgg gctttagcta tgaagctgaa attcgcgacg atcaaaatcg cccgctgccc
     5401 gccggagaaa ttggcgaaat ctgtattaaa ggcatccccg gcaagactat cttcaaagag
     5461 tattacatgc agccggaggc aaccgccagg gcgctggaac cagagggctg gttacatacc
     5521 ggtgattcgg gttaccagga tgaggatggc tatttctatt ttgtcgacag acgctgcaac
     5581 atgattaaac gcggcgggga aaatgtctcc tgcgtcgagc tggaaaatat tatttctgcg
     5641 catccgaaaa ttcaggacat tgtggtggtc ggtattaaag acgcgatccg tgatgaagcc
     5701 attaaagcgt ttatcgtcct taatgaaggt gaaacattaa gcgaggccga gtttttcagc
     5761 ttctgcgaaa acaatatggc gaaattcaaa gttccctctt ttatggagat cagaactgac
     5821 ctgccacgca actgttcagg aaaaataatc aaaaaaaatc tgaaataaac cttccggcag
     5881 gaatccctcc cgccgggaaa ctatttatct ggagatgaac tatgagtgag tcattacatc
     5941 tgacccgtaa cggcccgatc ctggaaatta ccctcgaccg acctaaagcg aatgccattg
     6001 atgcgaaaac cagttttgcg atgggtgaag cttttcttaa tttccgtgac gacccggaat
     6061 tacgcgtagc aatcattacc ggcggcgggg agaaattctt ttctgcgggc tgggacttaa
     6121 aagcggcagc ggaaggtgaa gcgccggatg ccgattttgg tcccggcggc tttgccggtt
     6181 taaccgaaat atttgacctc gataagccgg ttatcgccgc ggtgaacggc tacgcatttg
     6241 gtggcggttt tgagctggcg ctggcggcag actttattgt ctgcgccgaa aacgccagct
     6301 tcgcgctgcc ggaagccaag ctcggcatcg tgcctgacag cggcggcgta ttgcgtctgc
     6361 ctaagctgct gccaccggct atcgtcaacg aaatggtaat gaccggcaga cgaatgagcg
     6421 ccgaagaagc gctgcgttgg gggatcgtga accgcgttgt cagccagagc gaactgatgg
     6481 agagcgcgcg cgaactggcg caacaactgg tcaatagcgc tccgctggct atcgcggcgc
     6541 tgaaagagat ttatcgcgcg accagtgaaa tgccggttga agaaggctac cgctacatcc
     6601 gcagcggcgt gctgaaacat tatccgtcgg tactgcattc agaagatgcg ctcgaaggac
     6661 cgcaggcatt tgccgaaaaa cgcgctccgg tgtggaaagg tcgttaatgt gactatgccg
     6721 gatggcgctt cgcttatccg gcctacaaca catgcacaac cgtaggccgg ataaggtatt
     6781 tacgccgcca tccgacaaaa aaaaaccgag gtacaaccat gagctattac gcctttgaag
     6841 gactgatccc ggtggtgcat ccggacgcgt ttgtccatcc cagcgccgtg ctgattggcg
     6901 atgtcatcgt gggcgccggt gtttatattg gcccactcgc gtcattgcgt ggggattatg
     6961 gtcgcctgat cctggaggca ggctctaatc tgcaggatgg ctgcattatg catggctact
     7021 gcgataccga taccatcgtg catgaaaacg gccatatcgg ccacggcgct attctacatg
     7081 gctgcgtggt gggacgggat gccctggtcg gcatgaatag cgtcattatg gacggcgcag
     7141 tgattggcga agagagcatt gtcgccgcca tgagttttgt caaagccgga tttcagggtg
     7201 aggcaaggca actgctggtg ggatcaccgg cgcgcgtact acgccaggtt acggaccagg
     7261 agctgcactg gaaacgcctc aataccaaag aatatcagga tcttgcgatc cgttgtcgaa
     7321 cggggttatc tgaaacgaag ccgttaacgc aggtcgaaga aaaccgaccg cgcctgaaag
     7381 gcacgacgga cgtgaagcca aaatcagcac agtaattgat gccggatgcg ctcacgctta
     7441 tccggcctac gcgtcaatta ccgtttaccc cgccagcagg ttaaacagac aattagcgac
     7501 gcatactctt ggagagcatc atctgccatt tctgctcacg gtttagctct gtggggggaa
     7561 cggcagacag ccgcggcgct ttcgccacgc tcacttttct ttcctgcaaa ttatgattca
     7621 atcggcgata gagttgagag tcgatactca cgactttcac cagacgctgg cactggcagc
     7681 ctcgtcctgc aatttggtta gggatcatct tcacttcaca aacaatttcc cccacttctg
     7741 acagaatata ggagagcgta ttaattgctt tgcaatgttc aatatcaaat tgacgggaaa
     7801 tctccctggc agtgatccat cggttctctg ccatcatcca gtcagcaatt aacaaataaa
     7861 gcggtctttc aacatatttt tcacacataa gcacaccatt tcacaaatta aaaatctggc
     7921 tacggcctgt ccaaactaat aaaaactaag ccatattaaa attgtggata tgaaagatag
     7981 tatgcgactt aaatattgat tagtgtgagc aatatcgtgc ttattacatt gaaaatgtgg
     8041 ttacggaaac ggacttctcc aggaatgacc ttacgcaaga taaaaaaagg gtttctttac
     8101 agaaaccctt tcaacattat attacaggtt cggttagagc aatatccgcc gcccccttgg
     8161 tttacgactt tttgatctgc gcgtgcattt cctgcaccga ggttaccttc tcggtggcat
     8221 cggcattgag cgccatcgtc gtggcaaaac cgccgttcag cgtggtgtca taatgcacct
     8281 tatactgcaa cgcgctgcgg cgaatcaccc ttgagtcttc aatcgcccgg cggcctgcgg
     8341 tggtgttgat gatgtaggta tattcgccat tcttgatgcg gtcctgaatg tgcggacgac
     8401 cttcgtgcac cttgttcacc agacgcgggt tgataccggc ttcgcccagc acaatcgccg
     8461 taccgtgggt ggcatccagc tcgaagcctt gtttcagcag cttagcggcc aggtccacca
     8521 cgcgctcttt gtcgccttcg cgaaccgaga gcaacgcacg gccctgtttc ttcatagtgg
     8581 agttactgcc cagctgtgcc ttggcgaacg cttccgcgaa ggtacggccc acgcccatca
     8641 cttccccggt ggagcgcatt tctggcccta acagcgggtc aacgcccggg aatttgttga
     8701 acggcagtac cacttctttc accgagtagt acggcgggat aatttcttga gtcacgccct
     8761 gctcggtcag cgatttgccg gccatcacgc gcgccgccac tttcgccagc ggcacgccgg
     8821 tggctttgga gacgaacggc acagtacgcg ccgcacgcgg gttgacttca atcaggtaga
     8881 cttcgttgtc tttcaccgca aactgcacgt tcatcaggcc gcgcacctgc aactcgaagg
     8941 ccagcttctg cacctgctgg cgcatcacat cctgaatttc ctggcttagc gtgtaggccg
     9001 gcagagaaca ggcggagtcg ccggagtgta cgcccgcctg ctcgatgtgc tccatgatac
     9061 cgccaatcag caccatttcg ccgtcgcaga tagcgtccac gtccacttca accgcgtcat
     9121 caaggaagcg atccagcagc accggcgcat cgttagagac gctgaccgcc gtctggaagt
     9181 agcgacgcag atcggcttcg tcatagacaa tttccatcgc ccggccgccc agcacgtaag
     9241 aaggacgcac caccagcggg tagccgatct ctttcgcttt ttcgacagcc tgttcaatgg
     9301 cggtgacggt ggcgttggcc ggttgcttca gcttcagacg gtcaaccgcg tgctggaagc
     9361 gctcgcggtc ttccgcgcgg tcgatggcgt ccgggctggt gccgataacc ggcacgcctg
     9421 ccgcttccag cgcgcgcgcc agctttagcg gggtctggcc gccgtactgc acgataacgc
     9481 ctttcggctt ctcgatacgc acgatttcca gcacgtcttc cagcgtcacc ggctcgaagt
     9541 acaggcggtc ggaagtgtcg tagtcggtag agacggtttc cgggttacag ttgaccatga
     9601 tggtctcgta accgtcttcg cgcagcgcca gcgaggcgtg tacgcagcag tagtcaaact
     9661 caatgccctg gccgatacgg ttcgggccgc cgccgaggac catgatttta tcgcggtcaa
     9721 cggacgggtt cgcttcgcac tcatcttcat aagtggagta catataggcg gtgtcggtgg
     9781 cgaattccgc cgcgcaggta tccacacgct tgtagaccgg gtgcaggtca tactggtcgc
     9841 gcagcttacg gatttccccc tcgcgcacgc ccgccaattt tgccagacgc gcatcggcaa
     9901 aacctttacg cttgagctga cgcaggaagt cggcgttgag gccagtaatc ccgacttcag
     9961 ttactttctc ttccagacgc accagctctt caatttgcac caggaaccag cggtcgatgt
    10021 tggtcaggtt gaacacgccg tcgacggaga ggcctgcgcg gaaggcatcg gcgatatacc
    10081 agatacgatc tgcgcccgca tctttcagct cgcggcggat tttggtcagc gcttccgggt
    10141 cgtcgaggct gactttcggg tcgaagccgg tggcgccgac ttccaggccg cgcagcgctt
    10201 tttgcaggga ttcctgctgc gtgcggccaa tcgccatcac ttctccgacc gatttcatct
    10261 gggtggtcag acggtcgttg gcaccggcga atttctcgaa gttaaagcgc ggaattttgg
    10321 tcacaacgta gtcgatggac ggctcgaagg aggccggagt acgcccgccg gtgatgtcgt
    10381 tcatcagttc gtcaagggtg taacctaccg ccagtttggc ggccactttg gcaatcggga
    10441 aaccggtggc tttcgacgcc agcgccgagg agcgggagac gcgcgggttc atttcgataa
    10501 cgatcagacg accgtttttc gggttcactg cgaactggac gttagaaccg ccggtttcga
    10561 cgccgatttc acgcagtacc gccatcgagg cgttacgcat gatttgatat tctttgtcgg
    10621 tcagagtctg ggcgggcgcc acggtgatcg agtccccagt atggataccc atcgcatcga
    10681 aattttcgat agagcagacg atgatgcagt tgtcgttttt atcacgcacc acttccatct
    10741 cgtactcttt ccagccgatc agcgattcat caatcagcaa ttcgttggtt ggcgagagat
    10801 ccagaccgcg ttcgcagatt tcttcgaact cttcacggtt gtaagcgata ccgccgccgg
    10861 tgccgcccat ggtaaagcta ggccggatga tgcacgggaa gcccacgtca gcggcaaccg
    10921 ccagcgcttc ttccatggtg tgcgcgatac cggaacgcgc ggtgtcgaga ccaattttct
    10981 tcatggcgat atcgaagcga cgacggtctt cggctttatc aatggcgtcg gcggtggcgc
    11041 caatcatggt gacgccgaac tcttcgagca cgccctgccg ctccaactcc agcgcgcagt
    11101 tcagcgcggt ctggccgccc atggtcggca gcaccgcatc cggacgctct ttttcgatga
    11161 ttttgcgcac cacttcccag tgaatcggct cgatgtaggt ggcatcggcc atttccgggt
    11221 cggtcatgat ggtggccggg ttagagttca ccagaataac gcggtagcct tcttcgcgca
    11281 gcgctttaca cgcctgagcg ccggagtagt caaactcaca cgcctgaccg ataacaatcg
    11341 ggcccgcgcc cagaatcagg atgcttttta tatctgtacg ttttggcatt ttgttggctc
    11401 ctgattattt tgctgaagaa cggtagtgct taatcaattc gataaagtgg tcgaacagcg
    11461 gcgccgcatc gtgcgggccc gggctcgcct ccgggtgtcc ctggaagctg aacgccggtt
    11521 tgtcggtacg gtgaatgccc tgcagggtgc cgtcgaacag cgacttgtgg gtcacgcgca
    11581 ggttggcggg cagcgagtct tcatccaccg caaatccgtg gttctgcgcg gtgatcatca
    11641 ccacgtttct gtccatatct tttaccggat ggttgccgcc gtgatggccg aacttcatct
    11701 taacggtctt cgcaccgctc gccagcgcca gcagttgatg gccgaggcag atgccgaaca
    11761 caggaatgtc ggtctggagg aatttcttaa tcgcctcgat ggcgtagtcg cacggcgccg
    11821 ggtcgccagg gccgttcgac aggaagatgc cgtccggatt cattttcagc acctcttcag
    11881 cagaggtttg cgctggcacc accgtcaggc ggcagccgcg atccaccagc atacgtagaa
    11941 tgttgcgctt ggcgccaaaa tcgtaggcca ccacgtggaa cggcaggtca tcctcagatt
    12001 tcgcttccgg taaaccgtct ttcagcgtcc agctaccctg cgtccagcgg taagtttccg
    12061 ccgtggtcac ttctttcgcc agatccatac cgttcagtcc aggaaatgct ttcgcttttt
    12121 ccagcgccag cttcgcatcc gggctatcgc ctgcaatgat gcagccgttc tgtgcgcctt
    12181 tctcacgcag cagtcgggtc agcttgcggg tatcgatatc ggcaatcgcc acgatgttat
    12241 ggcgtttcag gtaagaagag aggtcttcgg tgttacggaa gttgctggca atcaacggca
    12301 gatcgcgaat cactaaacct tgcgcatgaa cctgagaaga ttcttcatcg gcttcattgg
    12361 tgccgacatt accaatatgg ggataagtaa gagtgacgat ttggcgggaa taggaaggat
    12421 cagtgaggat ttcttgataa ccggtcattg aagtattgaa aacgacttcc ccaaccgccg
    12481 aacctgttgc ccctatggcc cgaccgtgaa actgggttcc gtcttccaga accaatagcg
    12541 ctgacttaat caaaacaccc tccagagaat attcactcac tttatttgca tatcaattca
    12601 ttcagtcagt atgaagcaat gcaaatttgc ttacccgtgg atttctggca aacggcggca
    12661 ttctgaagtt aagccggata aaagtcaact taaagcgggt atttttt
//
LOCUS       DAJVSD010000120        12691 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.120, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000120 DAJVSD010000000
VERSION     DAJVSD010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 12691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12691
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.120"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            174..1805
                     /gene="oppA"
                     /locus_tag="OQP62_002694"
     CDS             174..1805
                     /gene="oppA"
                     /locus_tag="OQP62_002694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001675662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein OppA"
                     /protein_id="HCS1722211.1"
                     /translation="MSNITKKSLIAVGILTAFIAASAATAADVPAGVQLADKQTLVRN
                     NGSEVQSLDPHKIEGVPESNVSRDLFEGLLISDVEGHPSPGVAEKWENKDFKVWTFHL
                     RENAKWSDGTPVTAHDFVYSWQRLADPNTASPYASYLQYGHIVNIDDIIAGKKPATDL
                     GVKALDDHTFKVTLSEPVPYFYKLLVHPSVSPVPKSAVEKFGDKWTQPANIVTNGAYK
                     LKNWVVNERIVLERNPQYWDNDKTVINQVTYLPISSEVTDVNRYRSGEIDMTYNNMPI
                     ELFQKLKKEIPNEVRVDPYLCTYYYEINNQKAPFNDVRVRTALKLALDRDIIVNKVKN
                     QGDLPAYSYTPPYTDGAKLVEPEWFKWSQQKRNEEAKKLLAEAGFTADKPLTFDLLYN
                     TSDLHKKLAIAVASIWKKNLGVNVNLENQEWKTFLDTRHQGTFDVARAGWCADYNEPT
                     SFLNTMLSDSSNNTAHYKSPAFDKLIADTLKVADDTQRSELYAKAEQQLDKDSAIVPV
                     YYYVNARLVKPWVGGYTGKDPLDNIYVKNLYIIKH"
     gene            1927..2847
                     /gene="oppB"
                     /locus_tag="OQP62_002695"
     CDS             1927..2847
                     /gene="oppB"
                     /locus_tag="OQP62_002695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppB"
                     /protein_id="HCS1722212.1"
                     /translation="MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERALPPE
                     VLANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYTVNDLVAASFPVSAKLGA
                     AAFLLAVIIGVSAGVIAALKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQW
                     LLGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRR
                     IIFRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVL
                     SLTILVGALTILFNAIVDVLYAVIDPKIRY"
     gene            2862..3769
                     /gene="oppC"
                     /locus_tag="OQP62_002696"
                     /pseudo
     CDS             2862..3769
                     /gene="oppC"
                     /locus_tag="OQP62_002696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000979653.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppC"
     gene            3781..4788
                     /locus_tag="OQP62_002697"
     CDS             3781..4788
                     /locus_tag="OQP62_002697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1722213.1"
                     /translation="MSLSETATQAPQPANVLLEVNDLRVTFATPDGDVTAVNDLNFTL
                     RAGETLGIVGESGSGKSQTAFALMGLLATNGRIGGSATFNGREILNLPERELNTLRAE
                     QISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKIPEARKRM
                     KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNT
                     AIIMITHDLGVVAGICDKVLVMYAGRTMEYGKARDVFYQPVHPYSIGLLNAVPRLDSE
                     GAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICNNAPPLEAFSPGRLRACFKPVEEL
                     L"
     gene            4785..5789
                     /gene="oppF"
                     /locus_tag="OQP62_002698"
     CDS             4785..5789
                     /gene="oppF"
                     /locus_tag="OQP62_002698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016506804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppF"
                     /protein_id="HCS1722214.1"
                     /translation="MNAVIEQRKVLLEIADLKVHFDIKEGKQWFWQPPKTLKAVDGVT
                     LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGKVAWLGKDLLGMKADEWREVRSD
                     IQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQDVRDRVKAMMLKVGLLPNLINR
                     YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSL
                     IFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMSAVPIPDPDLE
                     RNKKIQLLEGELPSPINPPSGCVFRTRCPLAGPECAQTRPVLEGSFRHAVSCLKVDPL
                     "
     gene            5837..6673
                     /locus_tag="OQP62_002699"
     CDS             5837..6673
                     /locus_tag="OQP62_002699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion transporter"
                     /protein_id="HCS1722215.1"
                     /translation="MSLSLSSVRRRLYHNLFDLTTRSSRRFEGLCALFALLSVLVIFV
                     ESGVGTEYHLTFDEWHIFVWLELCVTLIFTGEYLLRLFSWPEPAKYVFSFWGFIDLVT
                     ILPLYVMWLWPEISLNYMFAWRAMRAIRVLRILKLLRFMPSLRVFWSAIISARHQLIL
                     FYSFIAIVMIIFGALMYLIEGPKYGFTTLNASVYWAIVTVTTVGYGDITPHTPLGRIV
                     ASVLILIGYSVIAIPTGLITTHMSSAFQKRHWQRKCPQCQQSQHEHSAQYCNRCGSKL
                     PD"
     gene            complement(6721..7050)
                     /locus_tag="OQP62_002700"
     CDS             complement(6721..7050)
                     /locus_tag="OQP62_002700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_448158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciU family protein"
                     /protein_id="HCS1722216.1"
                     /translation="MEMDLNNRLTEDETLEQAYDIFLELAADNLDPADIILFNLQFEE
                     RGGAELFDPAEDWQEHVDFDLNPDFFAEVVIGLADTEDGEINDIFARVLLCREKDHKL
                     CHILWRE"
     gene            complement(7084..8544)
                     /gene="cls"
                     /locus_tag="OQP62_002701"
     CDS             complement(7084..8544)
                     /gene="cls"
                     /locus_tag="OQP62_002701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HCS1722217.1"
                     /translation="MTTFYTVVSWLVILGYWVLIAGVTLRILMKRRAVPSAMAWLLII
                     YILPLVGIIAYLSVGELHLGKRRAERARAMWPSTAKWLNDLKACKHIFAQENSSVASS
                     LFKLCERRQGIAGVKGNQLQLLTDSDDVMQALIRDIQLARHNIEMVFYIWQPGGMADQ
                     VAESLMAAARRGIHCRLMLDSAGSVAFFRSPWAAMMRNAGIEVVEALKVNLMRVFLRR
                     MDLRQHRKMVMIDNYIAYTGSMNMVDPRFFKQDAGVGQWVDLMARMEGPVATAMGIVY
                     SCDWEIETGKRILPPPPDVNIMPFEQASGHTIHTIASGPGFPEDLIHQALLTATYAAR
                     EYLIMTTPYFVPSDDLLHAICTAAQRGVDVSIILPRKNDSLLVGWASRAFFSELLAAG
                     VKIYQFEGGLLHTKSVLVDGELSLVGTVNLDMRSLWLNFEITLVIDDTGFGADLAAVQ
                     DDYISRSRLLDARLWVKRPLWQRITERLFYFFSPLL"
     gene            8687..8860
                     /locus_tag="OQP62_002702"
     CDS             8687..8860
                     /locus_tag="OQP62_002702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciY family protein"
                     /protein_id="HCS1722218.1"
                     /translation="MKRSRTEVGRWRMLRQASRRKARWLEGQSRRNMRIHTIRKCIFN
                     RQRNSLLFAIHGV"
     gene            complement(8904..9200)
                     /locus_tag="OQP62_002703"
     CDS             complement(8904..9200)
                     /locus_tag="OQP62_002703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HCS1722219.1"
                     /translation="MLYVIYAQDNANSLEKRLSVRPAHLARLQLLHDEGRLLTAGPMP
                     AVDSNDPGVAGFTGSTVIAEFESLEAAQSWADADPYVAAGVYAQVSVKPYKKIF"
     gene            9424..10152
                     /gene="tonB"
                     /locus_tag="OQP62_002704"
     CDS             9424..10152
                     /gene="tonB"
                     /locus_tag="OQP62_002704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein TonB"
                     /protein_id="HCS1722220.1"
                     /translation="MTLDLPRRFPWSTLLSVGIHGAVVAGLLYTSVHQVIELPAPAQP
                     ITVTMVSPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKP
                     KPEPVKKVEEQPKREVKPAAPRPASPFENSAPMRPTSGTASATSKPAVSVPTGPRALS
                     RNQPQYPARAQALRIEGRVKVKFDVTAAGRVENVQILSAQPANMFEREVKNAMRKWRY
                     EAGKPGSGLVVNIIFRLNGAAQIE"
     gene            complement(10211..10612)
                     /gene="yciA"
                     /locus_tag="OQP62_002705"
     CDS             complement(10211..10612)
                     /gene="yciA"
                     /locus_tag="OQP62_002705"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HCS1722221.1"
                     /translation="MTTMDNTPQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAI
                     LAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKRGTTSISINIEVWVKKVASE
                     PIGQRYKATEALFIYVAVDPDGKPRPLPVQG"
     gene            complement(10773..11312)
                     /locus_tag="OQP62_002706"
     CDS             complement(10773..11312)
                     /locus_tag="OQP62_002706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HCS1722222.1"
                     /translation="MKQFLDFLPLVVFFAFYKLYDIYAATSALIVATAIVLIYSWVRY
                     RKIEKMALITFVLVAVFGGLTLFFHNDEFIKWKVTVIYALFAGALLISQWVMKKPLIQ
                     RMLGKELALPQQVWSKLNLAWALFFIACGLANIYIAFWLPQNIWVNFKVFGLTALTLI
                     FTLLSGVYIYRHLPQEDKS"
     gene            complement(11369..12112)
                     /locus_tag="OQP62_002707"
     CDS             complement(11369..12112)
                     /locus_tag="OQP62_002707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0259 family protein"
                     /protein_id="HCS1722223.1"
                     /translation="MSITAKSVYRDAGNFFRNQFITILLVSLLCAFITVVLGHAFSPS
                     DAQIAQLSEGEHLAGSAGLFELVQNMTPEQQQILLRASAASTFSGLIGNAILAGGIIL
                     MIQLVSAGHRVSALRAIGASAPALPKLFILIFLTTLLVQIGIMLIVVPGIIMAIVLAL
                     APVMLVEEKMGVFAAMRSSMRLAWANMKLVAPAVIGWLLAKTLLLLFAPSFAVLTPNV
                     GAVLANTLSNLISAVLLIYLFRLYMLIRQ"
     gene            complement(12138..12542)
                     /locus_tag="OQP62_002708"
     CDS             complement(12138..12542)
                     /locus_tag="OQP62_002708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HCS1722224.1"
                     /translation="MSVLNPCMTCGACCAYFRVSFYWAEGDDASGRVPASLTEPVTPF
                     LRCMAGTNQKQPHCKALIGTPGENVSCAIYENRPSTCREFSISGEGGEVNEACNRARA
                     RYGLPPLYKDMLFHTTADAATVELSRVQLPAN"
BASE COUNT         3142 a         3158 c         3336 g         3055 t
ORIGIN      
        1 gtcgtatacc gaatcgacga aagcgatcga acgaatcgtc agaataaata aagtcggtga
       61 tagcaaaagc agtgacagac ctggcagtac accaccagtg ctgtacagga gccctgacgg
      121 gattaaacag gctggtaaaa accagtaatt ataatgagtg gagtacaaac acaatgtcta
      181 acatcacgaa aaaaagttta attgcagtgg gaatactcac tgcgttcatc gccgccagcg
      241 ccgcgactgc ggcagacgtg cccgccggtg ttcagttagc cgacaagcaa acgttggtac
      301 gtaataatgg atcagaagtg cagtctctcg acccgcataa aattgaaggc gtgccggaat
      361 cgaacgtcag ccgtgatctc tttgaaggct tattaattag tgatgtcgag gggcatcctt
      421 caccgggcgt cgcggaaaaa tgggaaaata aagattttaa agtctggaca ttccatctac
      481 gtgaaaatgc gaaatggtca gatggtacgc ccgtcaccgc ccatgatttc gtttatagct
      541 ggcaacgcct ggccgatcct aatacggcat cgccgtacgc cagctatctg caatacggtc
      601 atatcgttaa tatcgatgac attatcgccg gtaaaaaacc cgccaccgat ctgggggtaa
      661 aagcgcttga tgatcacacc tttaaagtga ccttaagtga gccggtgcct tatttctaca
      721 aattgttggt ccacccttca gtgtctcctg taccgaaatc agcggtcgaa aaatttggcg
      781 ataaatggac gcaaccagcc aatattgtca ctaacggcgc ttataagtta aaaaattggg
      841 tggtgaacga acgtatcgtg ctggagcgta acccgcaata ctgggataac gacaaaaccg
      901 tcatcaatca ggtaacttat ttgcctatct cttcggaggt gacggatgtt aaccgctacc
      961 gcagcggcga gatcgatatg acttataaca atatgccgat cgaattattc cagaaactga
     1021 agaaagagat cccgaatgaa gtccgcgtag acccttattt gtgtacctat tattacgaaa
     1081 ttaataatca aaaagcgccg tttaacgatg tccgcgtgcg taccgcgctg aaactggcgt
     1141 tagatcgcga cattattgtt aataaggtta aaaatcaggg cgatttaccc gcttatagct
     1201 acacgccgcc gtataccgat ggcgcaaaac tggtagagcc tgagtggttc aaatggtccc
     1261 agcaaaagcg taatgaagaa gcgaagaaat tgttggctga agccggcttt acggcggata
     1321 agcccttaac attcgacctg ctgtataaca cctccgatct gcataaaaaa ctggctattg
     1381 ccgtggcgtc tatctggaag aaaaatctgg gcgtcaatgt gaatctggag aatcaggaat
     1441 ggaaaacctt cctggatacc cgtcatcagg gcacctttga tgtcgccaga gccgggtggt
     1501 gcgcagatta taatgaaccg acctcgttcc tgaataccat gttgtccgac agttcaaata
     1561 acaccgcgca ttataagagc ccggcgtttg ataagctgat tgccgacacg ctgaaagtgg
     1621 cggacgatac gcagcgcagc gaactctacg ctaaagcgga gcagcagtta gataaagact
     1681 cggctattgt gccggtgtat tactacgtta acgcgcgcct ggtgaaaccc tgggtgggcg
     1741 ggtataccgg taaagacccg ctggataata tttatgtgaa aaacttatat attatcaaac
     1801 attaatggca agacatggga caactgcggt tgtcccatgg tgtctttttt catcgcacta
     1861 taactttccc tggcggatct tttgtcacgt ccgggaagta aaggcacagg ccagaaggta
     1921 cgggcaatgt tgaaatttat tttacgccgc tgtctggaag cgattccgac gctgtttatt
     1981 cttattacca tctctttctt tatgatgcgc ctcgcgccgg ggagtccttt taccggcgag
     2041 cgcgcattgc cgccggaagt gctggccaat attgaagcaa aatatcatct gaacgatccc
     2101 atcatgacgc agtacttcag ctacctgaag cagctggcgc atggcgattt tggaccatcg
     2161 tttaaatata aagattacac ggtcaacgat ctggttgccg ccagcttccc cgtttcggcg
     2221 aaacttggcg ccgccgcttt tttgctggcg gtcattattg gtgtcagcgc tggcgtgatt
     2281 gccgcgctaa agcaaaatac gcgatgggat tatacggtga tgggatttgc catgaccggc
     2341 gtcgttatcc ccagttttgt ggtagcgccg ctactggtga tggtctttgc aataaccttg
     2401 caatggctgc ttggcggcgg ctggaacggc ggggcgttaa aatttatgat cctgccgatg
     2461 gtcgcgcttt cactggccta tattgccagc atcgctcgta ttacgcgcgg ctcaatgatt
     2521 gaagttctgc attcgaactt tattcgtacc gcgcgggcaa aaggattacc gatgcgcaga
     2581 atcatcttcc gccatgcgtt aaaacctgcg ctgctgccgg ttttatccta tatggggcca
     2641 gcctttgtcg gcattattac cggctcaatg gtgattgaaa cgatttatgg cttaccgggc
     2701 attgggcagc ttttcgttaa tggcgcgctc aaccgcgatt actcgctggt gttaagtttg
     2761 accattttag tcggggcgct gaccatattg tttaacgcca ttgtcgatgt gctctatgcc
     2821 gttatcgacc cgaaaattcg ctattgatac tggagctcgc gatgatgtta agtaagaaaa
     2881 acagcgagac gctggaaaat ttcagtgaaa agctggaggt ggaaggtcgc agcctttggc
     2941 aagatgcccg tcggcgcttt atgcataacc gtgcggcggt ggccagtctt attgtcctgt
     3001 ttctgatagc cctattcgtg acagtagcgc ctatgctgtc gcaatttacc tatttcgata
     3061 ccgactgggg catgatgtcc agcgcgccgg atatggcgtc cggccactat ttcggcactg
     3121 actcttccgg gcgcgatctg ttggtgcgcg ttgccatcgg cgggcgtatc tcattgatgg
     3181 tcgggattgc cgccgcgctg gtggcggtca ttgtcggaac gctgtatggc tcgctgtccg
     3241 ggtatctggg cggcaaaatt gattctgtga tgatgcgttt gttggagatc ctcaactcgt
     3301 tcccgtttat gttctttgtg attttgctgg tgacgttttt tggcagaaca ttctgttgat
     3361 tttcgtcgcc atcggcatgg tctcctggct tgatatggcg cgtatcgtgc gtggccaaac
     3421 cctaagtctt aaacgtaaag agttcatcga agccgcgcag gtgggtggtg tgtcgaccgc
     3481 cagcattgtg atccgccata ttgtgcctaa cgtcctgggc gtagtggtag tgtatgcatc
     3541 gttgctggtg cccagcatga ttctgtttga gtctttcctc agtttcctgg ggcttgggac
     3601 gcaggaaccg ttaagcagtt ggggagcgtt gttgagcgat ggcgcaaatt caatggaagt
     3661 cttaccgtgg ctgctgctgt ttccggctgg ctttctcgtg gtgacgttat tctgttttaa
     3721 ctttattggc gatggcctgc gtgatgccct cgacccaaaa gatcgttaag gagtacagcc
     3781 atgagcttat cagaaaccgc aactcaggcg ccgcaaccgg cgaatgtact gctggaggta
     3841 aacgatcttc gtgttacgtt cgctacgcct gatggcgatg tgacggcggt caacgatctg
     3901 aactttacgc ttcgcgctgg agaaacgtta ggtattgttg gcgagtctgg atcggggaaa
     3961 tcgcaaacgg cgttcgcatt aatgggactg ctggcgacga atggtcgaat cggcggttcc
     4021 gcgaccttta acggacgtga aattcttaat ctacctgagc gcgaactgaa tacgctgcgc
     4081 gcagaacaga tttcgatgat ttttcaggac ccgatgacct cgctaaatcc ttatatgcgc
     4141 gttggggagc agttaatgga agtcctgatg ctgcataaag gaatgagcaa agcggaagct
     4201 tttgaagagt ccgtcagaat gctggatgcc gtaaaaatac cggaagcgcg caaacggatg
     4261 aaaatgtacc cgcacgaatt ttccggcgga atgcgtcaac gtgtgatgat tgcgatggcg
     4321 ctgttgtgca ggccgaaact gcttattgcc gatgagccta ccaccgcgct tgatgttacc
     4381 gtgcaggcgc agattatgac cttgcttaat gagctaaagc gcgaatttaa taccgccatt
     4441 atcatgatta cccacgatct gggcgtggtc gcgggtattt gcgataaggt cctggtaatg
     4501 tatgccgggc gtaccatgga atacggtaag gcgcgcgatg tcttttatca gcccgttcat
     4561 ccgtattcga taggcttgct taatgcggtg ccgcgtctgg atagcgaggg ggcggaaatg
     4621 ctgacgattc cgggcaatcc tcccaattta ttgcgtttgc ctaaaggttg tccgttccag
     4681 ccgcgttgtc ctcatgcgat ggagatctgc aataatgcgc cgccacttga agcgttcagt
     4741 cctggtcgct tgcgcgcctg ttttaaaccg gtggaggaac tgctatgaat gctgtgattg
     4801 aacaacgtaa agttctcctc gaaatcgccg atctaaaagt acattttgat atcaaagaag
     4861 ggaagcagtg gttctggcaa ccgccgaaaa ccctgaaagc ggtggacggc gttacgctac
     4921 gcctgtatga aggcgaaacg cttggcgtgg tgggggaatc cggctgcggc aagtcgacgt
     4981 ttgcgcgcgc cattattggt ctggtgaagg cgacagacgg taaagtcgcc tggctgggaa
     5041 aagatctgtt gggcatgaaa gcggatgagt ggcgcgaggt gcgcagcgac atccagatga
     5101 ttttccagga cccgctggcg tcactcaacc cgcgaatgac gattggcgaa attatcgctg
     5161 aaccgctgcg cacttatcat cctaagcttt cgcgccagga cgtgcgtgac cgcgtgaaag
     5221 ccatgatgct gaaagtgggg ctgctgccga atctcatcaa ccgttatccc catgagtttt
     5281 ccggggggca gtgccagcgc atcggtatcg cccgggcgtt gatcctggag cctaagctca
     5341 ttatttgcga tgagccggtg tcggcgctgg acgtttctat tcaggcgcag gtggtgaatt
     5401 tgctccagca gttacagcga gagatggggc tgtcgttgat ttttattgcg cacgatctgg
     5461 cggtcgtaaa gcacatatcc gatcgtgtcc tggtgatgta tctcggtcat gcggtagaat
     5521 tgggcaccta tgatgaggtg taccataatc cactgcatcc ttataccaaa gcgctgatgt
     5581 cggcggtacc gattcccgat cccgatctgg agcgaaataa gaagatacaa ttgctggagg
     5641 gcgaattacc ttcgcccatt aacccgcctt ccggctgcgt gttccgtaca cgctgtccgc
     5701 tagccgggcc agaatgcgcg caaacgcgac cggtgttgga agggagtttt cgccatgccg
     5761 tttcctgcct taaagtagac ccgttataat cgcaagggct gacaattcgt cagcccttct
     5821 tttaggtgag gttaccgtgt cactttcttt gtcgtcggtt cgccgtcgtc tttatcataa
     5881 tctgttcgat ttgactacgc gctcaagtcg ccgttttgaa gggttatgcg cgctgtttgc
     5941 gctgcttagc gtactggtca tttttgttga atcaggcgta ggaacggaat atcacctgac
     6001 atttgatgaa tggcatattt ttgtctggct ggagctgtgc gttaccctga tatttaccgg
     6061 tgaatacttg ctcagactgt ttagttggcc cgaaccggca aaatacgttt ttagtttctg
     6121 gggatttatt gatctggtga cgattttgcc gctgtacgtc atgtggctat ggccggaaat
     6181 tagcctgaac tatatgtttg cctggcgcgc tatgcgagcg attcgcgtgc tgcgtattct
     6241 taaactgcta cgttttatgc catccctgcg cgtattctgg agcgccatta ttagcgcgcg
     6301 tcatcagctt attctgttct attcatttat tgcgatcgtg atgattattt tcggtgccct
     6361 gatgtatctt attgaaggac cgaaatatgg cttcacgacg cttaatgcct cggtgtattg
     6421 ggcgatagtg acagtcacaa ccgtggggta cggtgatatt acgccgcata cgccgctggg
     6481 acgtattgtc gcgtcggtgc ttattttgat tggttattcg gtgattgcga ttcctacagg
     6541 actgattacc acgcacatga gcagcgcgtt tcaaaaacgt cactggcagc gaaaatgtcc
     6601 gcagtgccag caaagccagc atgaacatag cgcgcaatat tgtaaccgat gcggcagtaa
     6661 gctaccggat taaacaggct tgccggaggg cgctatcaga cgccatccgg cctgaaccgc
     6721 ttattcgcgc cagagaatat ggcacagctt gtggtccttt tcccggcaca gcagaacgcg
     6781 ggcaaaaatg tcgttaattt cgccgtcttc ggtatccgcc aggccaatca ccacctcggc
     6841 aaaaaagtct ggattcaggt caaaatcgac gtgctcttgc cagtcttcag cgggatcaaa
     6901 caactccgcg ccgccgcgct cctcgaattg caaattgaac agaatgatat cagccggatc
     6961 aagattatcc gccgccagct caagaaaaat atcgtaagcc tgctcaagcg tttcgtcttc
     7021 agtcaggcga ttgttcagat ccatttccat agtgactacc tgtttactca tgttggtcac
     7081 gttttacagc aatggactaa agaagtaaaa caatcgctcg gtaatacgct gccataacgg
     7141 acgttttacc cacaaacgcg catctaacag gcgggagcgc gaaatataat cgtcctgtac
     7201 cgcagccaga tcggcgccga aacccgtatc atcaatgacc agcgtaatct cgaaattaag
     7261 ccacaggcta cgcatgtcga gattcacggt accgaccagg ctcagttcgc catcgaccag
     7321 cacgcttttg gtatgcaaca gcccgccttc gaactgatag attttcacgc ccgccgccag
     7381 taactcgctg aaaaaggcgc gactggccca gccgacgagc agtgaatcat ttttacgggg
     7441 caggataata ctgacatcca cgccgcgctg cgcagcggta caaatggcgt gcagcagatc
     7501 gtcgctgggg acgaaatatg gcgtggtcat aattaaatat tcgcgcgcag cataggtggc
     7561 ggttaatagt gcctggtgaa tgagatcttc cggaaaacca ggaccggaag caatggtatg
     7621 aatggtatgc ccgctggcct gctcaaacgg cataatattc acgtccggcg ggggaggcag
     7681 aatgcgttta cccgtctcga tttcccaatc gcaggagtaa acaatcccca ttgctgtcgc
     7741 cacgggaccc tccatccgcg ccatcaaatc gacccattgt ccaacgccgg catcctgttt
     7801 gaaaaaacgc gggtccacca tattcatact gccggtatag gcgatgtaat tgtcaatcat
     7861 caccatttta cggtgctggc gaagatccat acggcgtaaa aagacgcgca tcagattcac
     7921 cttcagcgcc tctacgactt caatgccagc gttacgcatc atggccgccc aggggctgcg
     7981 gaagaaagcg acgctacccg cggaatccag cataagccgg caatggatgc cgcggcgggc
     8041 ggcggccatt agcgattcag cgacctgatc cgccatgccg cctggctgcc agatgtaaaa
     8101 caccatttcg atattatgcc gcgccagttg gatatcgcga ataagcgcct gcatgacatc
     8161 atcggagtcg gtaagtaatt gcaactggtt gcctttgacg cccgcaatcc cctgacgtcg
     8221 ttcgcacagc ttaaacaagg acgatgcgac gctactgttt tcttgcgcga aaatgtgttt
     8281 gcaggctttg aggtcattca accatttggc ggtagacggc cacatggcgc gggcacgctc
     8341 ggcgcgacgt ttgcctaaat gcaattcgcc cacggacaaa taggcgatga tcccgaccag
     8401 cggaaggata tagatgatta acaaccaggc cattgcggag ggaactgcgc gccgtttcat
     8461 tagaatacgt aatgtgacgc cggcaatgag aacccagtat cccaaaatga ccagccaact
     8521 caccacggtg tagaaggttg tcataacttt aaaaatcctt tagaaagcgt gttgttaaga
     8581 gtttacgcgt caggattcac atggcaaata aaaacacggg aaaagcgctg gtctgcatcc
     8641 ggcgaggggg tataatggcg cttctgttac agtgagagtc gtaaacatga agcgtagtag
     8701 aacggaagtg gggcgctggc gaatgctacg tcaggcgagc cgccgtaaag cgcgttggct
     8761 tgaagggcaa tcacgccgta atatgcgtat ccatactatc aggaaatgca tctttaatcg
     8821 tcagcgtaat tcattactct ttgcgattca cggtgtgtga gccagaaagg gcaccgtatg
     8881 cggtgcccaa caggccatcc ttttcaaaag atcttcttat acggtttgac cgaaacctgc
     8941 gcatagacgc ccgctgcgac gtagggatcc gcatcagccc aggattgcgc tgcttctaaa
     9001 gattcaaatt cagcaatcac cgttgacccg gtaaatccgg ctaccccagg atcgttactg
     9061 tccactgcgg gcatcggccc ggcagttaat aatcgccctt catcatgcag aagttgcagg
     9121 cgcgccagat gcgcgggccg taccgagagg cgtttttcaa gcgagttggc attatcctga
     9181 gcgtaaataa catacagcac gggtagagct ccttaatcgg taaaagttgc tgattacgtt
     9241 attggaaagg gcatttaact gcaatgtaaa gataccgact ttgttaaaca tgcacatttt
     9301 gtgtggtgtt tttgtgcaat atcatctttt aaatgccgct atcggcaatg ccttattgaa
     9361 tatgattgct atttgcattt aaaattcagc tctggttttt caactgaaac gattatgact
     9421 tcaatgaccc ttgatttacc tcgtcgcttt ccctggtcga cactcctttc cgtaggcatt
     9481 catggtgctg tagtggcagg tttgctctat acctcggtac atcaggttat tgaattgcct
     9541 gcgccagcgc agcctatcac ggtgacaatg gtttcacccg ctgacctgga gccgccccag
     9601 gcggttcagc cgccgccgga gccggtggtt gaacccgaac cggagccaga gccgatccct
     9661 gaaccgccta aagaagcgcc cgtggtgatt gagaaaccca aacctaagcc aaaacccaag
     9721 ccaaaaccga aaccggaacc ggtgaaaaag gttgaagagc agccgaagcg cgaagtcaaa
     9781 ccagccgcac cgcgtcctgc ctcaccgttt gaaaatagcg ccccgatgcg gccaacaagc
     9841 ggcaccgcat cggcgaccag caagccggcg gtgagcgtgc ccactggacc tcgagctctg
     9901 agccgtaacc agccgcagta tccggcgcga gcacaggcgt tacgtattga aggccgcgta
     9961 aaggtgaagt ttgacgtgac cgctgctggg cgagtggaaa atgtacagat tctatccgcg
    10021 cagccagcca atatgtttga gcgtgaagtt aagaatgcga tgcgaaaatg gcgctatgaa
    10081 gcaggcaagc cgggttccgg gctggtggtc aatattatct tccgtctgaa cggtgcggcg
    10141 cagattgagt aatctctggc gccgccagta ggaatatacc atcacctgct ggcggcgtaa
    10201 gcgggtatac ttaaccctga accgggagcg ggcgaggttt accgtccgga tcgacggcaa
    10261 cataaataaa cagcgcctcg gtggccttgt agcgctgtcc aatcggttct gacgcgactt
    10321 ttttcaccca gacttcaata ttgatgctaa tagacgtcgt accgcgttta acgcagcgcg
    10381 cgtagcagca tacgacatcg ccaaccgcga cggggcgcag aaatgtcatt ccttccacgc
    10441 gtacggttac aacccgaccg tgcgcgatct ctttggccag tatcgcgccg ccaatatcca
    10501 tttgcgacat cagccagccg ccaaaaatat cgccgttcgc attggtatcg gcaggcatgg
    10561 ccaatgtacg taaaaccagc tcgccctgag gagtattatc cattgttgtc attgtaaaac
    10621 cgactatcag aaaaaattac agccgcgatg ctactatgaa tattgtgtgg agaatagtgg
    10681 gaataaaggt actgacggga aagcgcaggg cgtaaaggcg gagaaaatat cgccaggcgt
    10741 tcgcagtctg gcgatgataa gtcacgggag ggttatgatt tatcttcctg tggcagatgc
    10801 cggtagatat agacgccgct cagcagggta aaaatgagcg tcagcgccgt gagtccgaag
    10861 accttaaagt taacccagat attttgcggc aaccagaagg cgatataaat gttagccaga
    10921 ccgcacgcaa taaaaaacag cgcccacgcc aggttcagct ttgaccagac ctgctgcggc
    10981 aacgccagtt ctttacctaa catacgttgg attaacggtt ttttcatcac ccactggctt
    11041 attaacagcg cgccggcgaa cagcgcataa ataaccgtca ccttccattt aataaattca
    11101 tcgttatgga agaagagcgt cagaccgccg aagacggcaa ccagaacaaa ggtaatcagc
    11161 gccatcttct ctattttccg atagcgcacc cagctataaa tcagcacgat tgccgttgcg
    11221 acaatcagtg cggaggtcgc cgcatagatg tcataaagtt tataaaacgc aaaaaagaca
    11281 accagcggta aaaaatccag aaactgcttc attcttcgat tccatcatca acgagcgtcg
    11341 aatgcgccgc gtaacggcgc attgcggatt attggcgaat caacatatac aggcggaata
    11401 agtagataag caatactgcg gaaatcagat tgctcaacgt attcgccagt acagcgccta
    11461 catttggggt cagtacagcg aagctgggcg cgaacagcaa tagcaatgtt ttagccagta
    11521 accagcctat caccgcaggc gcgaccagtt tcatgttagc ccaggctaaa cgcatactgc
    11581 tgcgcattgc ggcaaacacg cccattttct cttcaaccaa catcactggc gcaagcgcca
    11641 gcacaatggc cataataatc cccggaacga caatcagcat tataccgatt tgcactaaca
    11701 gggtagtcag aaaaataaga ataaacagtt taggcaatgc aggggcgctg gcgccgatag
    11761 cgcgcagcgc gctaacccga tgtcccgctg aaactaactg aatcatcagg atgataccgc
    11821 cggccagaat agcgttgccg ataagcccgg aaaacgtcga ggcggcagag gcgcgcaaca
    11881 ggatctgttg ctgctccggc gtcatatttt gtaccagctc aaacaggcca gcgctgcctg
    11941 ccagatgttc tccttcactg agttgcgcga tttgcgcatc gctgggtgaa aaggcatgac
    12001 ctaagaccac cgtgataaat gcgcacagca acgaaaccag caagatagta ataaattgat
    12061 ttcggaaaaa atttccggcg tcacggtaaa cggacttcgc cgtgatagac atgcactctc
    12121 cttgagtttt gcaggtgtta atttgcgggc aattgtaccc tggataactc tacagtggca
    12181 gcatcagcag ttgtatggaa aagcatatct ttgtaaagcg gcggtaatcc gtatcgcgcg
    12241 cgggcgcgat tacacgcctc attcacttcg cctccttcgc ccgatatcga aaattcgcga
    12301 caggttgaag ggcggttttc ataaatagcg caactgacgt tttcacccgg cgtgccaatt
    12361 agcgctttac agtgcggctg tttttggttg gtaccggcca tacaacgtaa aaaaggggta
    12421 acaggctcgg ttaatgacgc cggaacgcgt ccgctggcat cgtcgccttc agcccaataa
    12481 aaggagacac gaaaataggc acaacaggca ccgcatgtca tgcatgggtt aagaacgctc
    12541 atgattcacc tgcaaaaaac tcacgtatca atagattaca acggaaatta atctgtcccg
    12601 cagtgttcgc gaatcttacc gccacgcgcc attgcgggac attgattacc ttagccagcc
    12661 tttatcgcca gggcaacagg agcagacaaa t
//
LOCUS       DAJVSD010000121        12688 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.121, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000121 DAJVSD010000000
VERSION     DAJVSD010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 12688)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12688)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12688
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.121"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..453
                     /locus_tag="OQP62_002709"
     CDS             <1..453
                     /locus_tag="OQP62_002709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HCS1722225.1"
                     /translation="DKIDRKLLCLLQQDCTLSLQALADAVNLTTTPCWKRLKRLEDDG
                     ILLGRVALLDPEKLGLGLTAFVLIKTQHHSSEWYCRFVTVVSEMPEVLGFWRMAGEYD
                     YLMRVQVADMKRYDDFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE"
     gene            494..2266
                     /locus_tag="OQP62_002710"
     CDS             494..2266
                     /locus_tag="OQP62_002710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SmdA family multidrug ABC transporter
                     permease/ATP-binding protein"
                     /protein_id="HCS1722226.1"
                     /translation="MRLFAQLSWYFRREWRRYLGAVALLMLIAMLQLIPPKVVGIVVD
                     GVTAQHFTPGRIAMWIGTIALIAVVVYLLRYVWRVLLFGASYQLAVELREDYYRQLSR
                     QHPEFYQRHRTGDLIARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQL
                     TLLALLPMPIMALMIKRYGDRLHDYFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR
                     QSSLFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAISGGSWMVVNGSLTLGE
                     LTSFMMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGEEPVPAGRGE
                     LTAAIREFCYPQTTHPALENVNFRLKPGQMLGICGPTGAGKSTILSLIQRHFDVTQGE
                     IRFHDMPLTHLQLDSWRSRLAVVSQTPFLFSDSIANNIALGRPEATQEEIERVARLAS
                     VHEDILRLPQGYDTQVGERGVMLSGGQKQRISIARALLLNAEILLLDDALSAVDGRTE
                     HQILHNLRQWGEGRTVIISAHRLSALTDANEIIVMQHGHVVQRGDHDQLAQQIGWYRD
                     MYRYQQLEAALDDAPERGEEAVNA"
     gene            2259..4040
                     /locus_tag="OQP62_002711"
     CDS             2259..4040
                     /locus_tag="OQP62_002711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SmdB family multidrug efflux ABC transporter
                     permease/ATP-binding protein"
                     /protein_id="HCS1722227.1"
                     /translation="MRSFGQLWPTLKRLLAYGSPWRKPLSVAVMMLWIAVAAEVSGPL
                     LISYFIDNMVARHHLPLGKVAGLAAAYVGLQFLAAGLHYAQSLLFNRAAVGVVQSLRT
                     DVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAM
                     FSLDWRMALVAVLIFPAVLTVMVIYQRYSTPIVRRVRAYLADINDGFNEIINGMSVIQ
                     QFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFSFTSA
                     GTIEVGVLYAFISYLSRLNEPLIELTTQQSMLQQAVVAGERVFELMDRPRQRYGSDDR
                     PLQSGAIDIDHLSFAYRDDNLVLQDITLSVPSRSFVALVGHTGSGKSTLASLLMGYYP
                     LTQGEIRLDGREIASLNHRVLRQGVAMVQQDPVVMADTFLANVTLGRDVSEAQVWQAL
                     ETVQLADLARGLSDGLHTHLGEQGNTLSVGQKQLLALARVLVDAPQILILDEATASID
                     SGTEQAIQQALAAIRERTTLVVIAHRLSTIVEADTILVLYRGQAVERGTHQQLLAAQG
                     RYWQMYQLQLVGEELAASVHEESGPTA"
     gene            4253..4591
                     /gene="glnK"
                     /locus_tag="OQP62_002712"
     CDS             4253..4591
                     /gene="glnK"
                     /locus_tag="OQP62_002712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HCS1722228.1"
                     /translation="MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAE
                     LYRGAEYSVNFLPKVKIDVAIADDQLEEVIDIISKAAYTGKIGDGKIFVAELMRVIRI
                     RTGEADEAAL"
     gene            4623..5909
                     /gene="amtB"
                     /locus_tag="OQP62_002713"
     CDS             4623..5909
                     /gene="amtB"
                     /locus_tag="OQP62_002713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter AmtB"
                     /protein_id="HCS1722229.1"
                     /translation="MKIAMIKTTLASLALLPGLTIAAPAVADKADSAFMMICTALVLF
                     MTIPGIALFYGGLIRAKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEGNHFFGNADG
                     AMLKNIALTAVTGTIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWFTL
                     SYIPIAHMVWGGGLLAAHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPH
                     NLPMVFTGTAILYIGWFGFNAGSAGSANEIAALAFVNTVVATAAAILGWIIGEWTLRG
                     KPSLLGACSGAIAGLVGVTPACGYVGVGGALVIGVIAGLAGLWGVTMLKRLLRVDDPC
                     DVFGVHGVCGIVGCILTGVFAASSLGGVGFVDGVTMGHQVMVQLESIAITVVWSGVVA
                     FVGYKLADILVGLRVPEEQEREGLDVNSHGENAYNA"
     gene            complement(6009..6869)
                     /gene="tesB"
                     /locus_tag="OQP62_002714"
     CDS             complement(6009..6869)
                     /gene="tesB"
                     /locus_tag="OQP62_002714"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase II"
                     /protein_id="HCS1722230.1"
                     /translation="MSQTLNNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQAL
                     YAAKETVPEARLVHSFHSYFLRPGDSQKPIIYDVEVLRDGNSFSARRVAAIQNGKPIF
                     YMTASFQAPEPGFEHQKTMPTAVGPEGLPSETEIAQSLAHLLPPILKEKFLCDRPLEI
                     RPVEFHNPLKGHVSAPVRQVWIRANGTVPDDIRVHQYLLGYASDLNFLPVALQPHGIG
                     FLEKGIQIATIDHSMWFHRPFNFNEWLLYSVESTSASSARGFVRGEFYTQDGALVAST
                     VQEGVMRNHN"
     gene            7084..7653
                     /locus_tag="OQP62_002715"
     CDS             7084..7653
                     /locus_tag="OQP62_002715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaY family lipoprotein"
                     /protein_id="HCS1722231.1"
                     /translation="MKLVHIVSGLAVAISLAACADKSADIQTPAPNPNMSITANQSTI
                     QQPNVSGTVWIRQKVALPPDAVLTVTLSDASLADAPSKVLSQKAVRTEGKQAPFSFVL
                     PFNPSDIQPNARILLSAAITVDNKLVFITDSVKPVINNGGTKADLTLVPVQQTAVPVQ
                     ASGGATTTVPSTSPTQVNPSSAVPAPTQY"
     gene            complement(7686..8075)
                     /locus_tag="OQP62_002716"
     CDS             complement(7686..8075)
                     /locus_tag="OQP62_002716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HCS1722232.1"
                     /translation="MLVSCASGLSSPLIPDYPEALTQDSIMDIQDTFPQRVWQIVASI
                     PEGFVTTYGDVARLAGSPRAARQVGGVLKRLPEGSTLPWHRVVNRHGAISLTGPDLQR
                     QRQALLAEGVVVSGSGQIDLQRYRWVY"
     gene            8160..8256
                     /gene="ffs"
                     /locus_tag="OQP62_002717"
     ncRNA           8160..8256
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="OQP62_002717"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            complement(8306..9856)
                     /locus_tag="OQP62_002718"
     CDS             complement(8306..9856)
                     /locus_tag="OQP62_002718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HCS1722233.1"
                     /translation="MTTRHLVSLVTGVLILSVLFPIGLSLWLAHRQVEKRFNEELDIF
                     SSRVALRTERVSDQAKAALTHIASFKGEPCSSAHLLAMRRVSYSFRYVQEVLYLKNSI
                     PVCSSLEKESHIPAFPPPMKITRDGYRAWFTAQNDLGIKRYMAALGSDSYIVMIDPAS
                     FIDVIPFGAWPIDVAIIGRERNTVVASSGNLDHAILPLIHHETPLRLENRGIQYAIHP
                     FPEMGITIVSWAPTAPLERSWYRQAFIWLPAGIVTGLLAAAFILRILRRLQSPRHRLQ
                     DAIDNREINVHYQPIVSLSSGKIVGAEALARWQQADGTFLSPEIFIALAEQTGLTEPL
                     TRLIIDTVFEDMGSWLKSHPEQHISINLEASDLASETLPTLLSTLLNRSQISPSQIAL
                     ELTEREFADPKTSAPIVARYRNAGHSIYIDDFGTGYSSLSYLQNLDVDVLKIDKSFVD
                     ALEYKNVTPHIIEMAKTLKLKMVAEGIETTRQEQWLRQHGVHYGQGWLYSKPLPATAF
                     ILWVEQRL"
     gene            10081..10341
                     /locus_tag="OQP62_002719"
     CDS             10081..10341
                     /locus_tag="OQP62_002719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HCS1722234.1"
                     /translation="MKPDIHPVYRTVVFHDTSANEYVKVGSTIKTEREIELDGVTYPY
                     VTIDVSSKSHPFYTGRQKTFDSESSAARFQKRFGHFIGAKRG"
     gene            10347..10487
                     /gene="ykgO"
                     /locus_tag="OQP62_002720"
     CDS             10347..10487
                     /gene="ykgO"
                     /locus_tag="OQP62_002720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HCS1722235.1"
                     /translation="MQVLNSLRNAKQRHPDCQIVKRKGRLYVICKTNPRFKAVQGRKK
                     RR"
     gene            complement(10543..11013)
                     /locus_tag="OQP62_002721"
     CDS             complement(10543..11013)
                     /locus_tag="OQP62_002721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722236.1"
                     /translation="MTEIQRLLSETIDDLNVREKRDNRPRFSISFIRKHPGLFIAMYA
                     AWFATLAVMLQSETLVGSVWLLVVLFIAFNGFFFFDIAPRYHYNDIDVLDLRVCYNGE
                     WYNTRFVPPTLIETILQSPQVDNEHKVQLQKMVARKGELSFYDIFTLARAEASR"
     gene            complement(11131..11682)
                     /gene="maa"
                     /locus_tag="OQP62_002722"
     CDS             complement(11131..11682)
                     /gene="maa"
                     /locus_tag="OQP62_002722"
                     /EC_number="2.3.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose O-acetyltransferase"
                     /protein_id="HCS1722237.1"
                     /translation="MSDEKQKMIAGALYCPTDETLCQDRLRARQLIHQYNYTTPDEIN
                     KRQAILRDLLGRCEDAYIEPSFRCDYGYNIFLGHSFYANFDCVMLDVCPIHIGDNCML
                     APGVHIYTATHPLDAVERNSGRELGKPVTIGNNVWIGGRAVVNPGVTIGDNVVVASGA
                     VVTKNVPPDVVVGGNPARIIKKL"
     gene            complement(11861..12079)
                     /gene="hha"
                     /locus_tag="OQP62_002723"
     CDS             complement(11861..12079)
                     /gene="hha"
                     /locus_tag="OQP62_002723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin expression modulator Hha"
                     /protein_id="HCS1722238.1"
                     /translation="MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFY
                     SAADHRLAELTMNKLYDKIPSSVWKFIR"
     gene            complement(12107..12481)
                     /gene="tomB"
                     /locus_tag="OQP62_002724"
     CDS             complement(12107..12481)
                     /gene="tomB"
                     /locus_tag="OQP62_002724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001741190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hha toxicity modulator TomB"
                     /protein_id="HCS1722239.1"
                     /translation="MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAV
                     NLQLNELIEHIATFALNYKIKYNEDNKLIAQIDEYLDDTFMLFSSYGINTQDLQKWRK
                     SGNRLFRCFVNATRANPVSLSC"
BASE COUNT         2900 a         3106 c         3541 g         3141 t
ORIGIN      
        1 gataaaattg accgtaaact gctttgctta ttgcagcagg actgtaccct ctctttgcag
       61 gcgctggcgg atgccgttaa tctgacgaca acgccttgct ggaagcggct taaacgcctg
      121 gaagatgacg gtatcctgct tggcagggtt gcgctgctgg acccggaaaa actggggctg
      181 gggttaaccg cttttgtgtt gataaaaacg cagcaccaca gcagtgaatg gtactgtcgg
      241 ttcgtgaccg tcgtctctga gatgccggaa gtgcttggct tctggcggat ggcgggggag
      301 tacgactatc tgatgcgagt tcaggtggcc gacatgaagc ggtatgacga cttctataaa
      361 cgtctggtca atagcgtccc aggactgtca gacgtcacct ccagttttgc gatggaacag
      421 attaagtaca ccacctctct gcccattgaa taattctccc ggtattgccg gaaatcatat
      481 caggaaataa cgcgtgcgat tatttgctca attaagctgg tactttcgcc gggaatggcg
      541 tcgctatctt ggcgcggtgg ccctgcttat gcttattgcg atgcttcagc tgatcccgcc
      601 caaagtggtg gggattgtcg tggatggcgt aaccgcacag cattttactc caggccgaat
      661 agcgatgtgg attggcacca ttgccctgat cgccgtagtg gtctatttgt tgcgctatgt
      721 ctggcgcgtg ctgctatttg gcgcttctta tcaattagcc gtcgaactgc gtgaagatta
      781 ttatcgccag ctgagtcgtc agcatcctga attttatcag cgccatcgaa cgggcgatct
      841 tattgcgcgt gcgacgaatg atgtggatcg cgtcgtattt gcggcgggcg agggcgttct
      901 gacgctggtt gactcgctgg taatgggctg cgcggtactg attgtcatgt cgacgcaaat
      961 tagctggcag ctaacgctat tagcgctgtt gccgatgccg attatggcgc tgatgatcaa
     1021 acgttacggc gatcgactgc atgattattt caaactggcg caggccgcct tctccagcct
     1081 gaacgaccgc acgcaggaga gtctgaccag catccgcatg atcaaagcgt ttggtctgga
     1141 ggaccgccag tcttcgctgt ttgcggcgga tgccgaagat accggcaaga aaaatatgcg
     1201 cgtggcgcgt attgacgcgc gttttgatcc aaccatttac atcgccattg gcatggcgaa
     1261 cctgctcgcg attagcggcg gaagctggat ggtggttaac ggcagcctga cgctgggcga
     1321 actcaccagc tttatgatgt atctggggtt gatgatttgg ccgatgctgg cgctggcctg
     1381 gatgtttaat atcgtggagc ggggtagcgc cgcttacagc cgcatccgcg ccatgctggc
     1441 ggaagcgccg gtagttaagg atggcgaaga gcccgtcccg gcggggcggg gcgaactgac
     1501 ggcggccatt cgtgagtttt gctatccgca aacgacgcat ccggcgctgg agaatgtgaa
     1561 ctttcgtctt aaaccgggtc agatgctggg gatatgcggt ccgaccggcg cggggaaaag
     1621 cacaatcttg tcgcttatcc agcgccattt tgatgtgacg cagggagaga tccgattcca
     1681 tgacatgccg ttgacgcatc tgcaactgga tagctggcgt agccgactgg cggtcgtcag
     1741 ccagacgccg tttttgttct cggattctat tgccaataat attgcgctcg gacgcccgga
     1801 ggcgacccag gaagagattg aacgggtggc gcgtttagcc agcgtacatg aggatattct
     1861 ccgtttgcct cagggctatg acacgcaggt aggtgaacgt ggcgtcatgt tatcgggtgg
     1921 gcaaaaacag cgtatctcga tagccagagc gctactgttg aatgcggaaa ttctgcttct
     1981 tgatgatgcg ctttcagcag tagatggtcg tacggagcat cagattttgc ataatttgcg
     2041 ccagtggggc gaagggcgta cggtcatcat cagcgcgcat cgtttatccg cgctgaccga
     2101 cgccaatgaa attatcgtta tgcaacatgg tcatgttgtt cagcgcggcg atcacgatca
     2161 actggcgcag cagattggct ggtatcgcga tatgtatcgc tatcagcaac tggaggccgc
     2221 tctggatgac gcgccggaac gcggcgagga ggcggtgaat gcgtagtttt ggacagctat
     2281 ggccgacgct gaaacggttg ctggcgtatg gctcgccatg gcgaaaaccg ctctctgtcg
     2341 cggtgatgat gctgtggatt gcggtggcgg cggaggttag cggtccgctg ctgatcagct
     2401 atttcattga taacatggtg gcccgccacc atttaccgtt gggcaaggtc gcggggctgg
     2461 cggccgccta tgtggggcta cagtttctgg cggcgggtct gcattacgcc cagtctttat
     2521 tatttaaccg ggcggccgtt ggcgtggttc agtccttgcg cacggacgtc atggatgccg
     2581 ccttgcgcca gccgctaagc gccttcgaca cgcagcctgt cggacaatta atttcacgcg
     2641 tgaccaacga tacggaagtc atccgcgatc tgtacgtcac ggtcgtcgca acggtattac
     2701 gtagcgcggc gttgatcggc gccatgctgg tcgccatgtt cagccttgac tggcggatgg
     2761 cgctggtggc ggttttgatt tttccggcgg tattgaccgt gatggtcatt tatcagcgct
     2821 acagcacgcc gattgtacgc cgcgtgcggg catacctggc ggatattaac gacggcttta
     2881 acgaaatcat caatgggatg agcgtaattc agcagtttcg ccagcaggcg cgcttcggcg
     2941 aacgcatggg cgaggccagc cgctcgcact acatggcgcg gatgcagacg ctgcgcttgg
     3001 acggcttttt attgcgtccg ctgcttagcc tcttttccgc gctcatttta tgcggtttgt
     3061 tgatgctttt cagctttacg tctgccggca cgattgaggt cggggtgctg tatgcgttca
     3121 ttagctattt gtcacgtctg aacgagccgc tcattgaact gaccacccag caatccatgc
     3181 tacagcaggc ggttgtggcg ggagagcgtg tttttgaact gatggatcgc ccgcgccagc
     3241 gctatggcag cgacgacagg ccgttacaaa gcggggcgat tgatattgat catctgtcgt
     3301 ttgcttaccg cgacgataat cttgttttac aggacattac gctatcagta ccgtcccgta
     3361 gctttgtggc gctggtgggg cacaccggca gcgggaagag cacgctcgcc agcttattaa
     3421 tggggtatta ccccctgaca caaggcgaaa ttcggctgga tgggcgagaa atcgcctctc
     3481 ttaatcatcg cgttttacgc cagggcgtgg cgatggttca acaggacccg gtagtgatgg
     3541 cggatacctt tctggctaat gtgacgctgg ggcgcgatgt ctccgaggcg caggtgtggc
     3601 aggcgctgga aacggtacaa ctggcagatc tggcgcgcgg cctgagcgac gggctgcata
     3661 cgcatctcgg cgagcaggga aatacgctgt ccgtcgggca aaaacagcta ttggcgctgg
     3721 cgcgcgtgct ggttgacgcc ccgcaaatat taattcttga tgaagcgacg gccagcatcg
     3781 attccggcac tgagcaggcg atacagcagg cgctggcggc gattcgcgag cgcaccacgt
     3841 tggtggttat tgcccatcgg ctatcgacaa tcgtggaggc ggataccatt ctggttctct
     3901 atcgcggcca ggcggtggag cgcgggacgc atcaacaatt gctggcggcg caagggcgct
     3961 actggcaaat gtatcaatta cagttagttg gcgaggagtt agccgccagc gtacacgaag
     4021 aatccggccc tacggcgtaa ggtttggcgc cacagggcaa aacctcgccc attatgcacc
     4081 gtcgtggtgc gtttttcttt ccctgcttcg tttttggggc gcgtcaatat aaagacgcgc
     4141 cgctaaccgc gcttttcctc gctcgccagc ttctggcaca tcctttgcaa tatccatcct
     4201 gaagagtcca tgcgcggcgg cagccgttac ctaattctga ctggagggtt ctatgaagct
     4261 ggttaccgtg attatcaaac cgttcaagct ggaggacgtg cgggaggcgc tttcttccat
     4321 tggcattcag ggactgaccg tcaccgaagt gaaagggttt ggccgtcaga aaggacacgc
     4381 cgaactgtat cgcggcgcgg agtacagcgt gaatttcctg ccgaaggtca aaattgatgt
     4441 ggctatcgcc gacgaccaac tggaagaggt gatcgatatc atcagtaaag cggcttacac
     4501 cggaaaaatt ggcgacggca aaattttcgt cgcggagctc atgcgcgtta ttcggattcg
     4561 taccggcgaa gctgacgaag cagcgctgta agacccgcca cacagcaaca ggaaatgaaa
     4621 aaatgaagat agcgatgata aaaaccacac tggcttcact ggcgctgctg cctgggctaa
     4681 cgatagccgc gccagcggtt gccgataaag cggatagtgc ttttatgatg atttgcaccg
     4741 cgctggtgct gttcatgacg ataccgggta tcgcgctgtt ttacggcgga ttaattcgcg
     4801 ccaagaatgt gctgtcaatg ttaacgcaag tgaccgtcac ctttgcgctg gtctgtattt
     4861 tatgggtggt gtacggctat tcgctggctt ttggcgaagg gaatcatttc ttcggtaatg
     4921 ccgatggggc gatgttgaag aatatcgcgt tgacggcggt aacgggtacg atttatcagt
     4981 atattcatgt cgcgtttcag ggatctttcg cctgtattac cgtcgggctg attgtcggcg
     5041 cgctggcgga gcgtattcgt ttttcggcgg tactgatttt tgtcgtggtg tggttcacgc
     5101 tctcttatat cccgattgcg cacatggtgt ggggcggcgg cctgctggct gctcacggcg
     5161 cgctggattt tgccggtggt acggtggtgc atattaacgc cgctatcgcc gggctggtgg
     5221 gggcttattt aattggcaaa cgcgtcggct ttgggaaaga agcatttaaa ccccataacc
     5281 tgccgatggt ctttaccggt actgcgattc tgtatatcgg ctggtttgga tttaacgcgg
     5341 gttctgcggg tagcgcaaac gagatagcag cgctggcctt tgtgaacacc gtggtggcga
     5401 ccgccgccgc gattctgggg tggattatcg gcgagtggac gctacgcggt aagccttccc
     5461 tgctgggagc gtgttccggc gcgattgccg gtctggtcgg cgtgacgcca gcctgtggct
     5521 atgttggcgt tggcggcgcg ctggttatcg gcgttattgc gggtctggcg ggattgtggg
     5581 gagtcaccat gcttaaacgt ctgctacggg tagatgatcc gtgcgacgta tttggcgttc
     5641 acggcgtttg cggaatagtc ggctgtatcc tgaccggcgt ttttgccgcc agttcgctgg
     5701 gtggcgtcgg ctttgtcgac ggcgttacga tgggacatca ggtgatggta cagctggaaa
     5761 gtattgctat tacggtcgtc tggtccggcg ttgtcgcgtt tgttggttac aaactggcgg
     5821 atatccttgt tggactgcgt gtaccggaag agcaggagcg cgaggggctg gatgtgaaca
     5881 gtcacggcga gaatgcgtat aacgcgtgat tgcgcaacat gcctgatggc gctgcgctta
     5941 cccagtctac cgtaggccgg ataagcgcag cgtcatcagg ccattaacgc cgcatagcgg
     6001 catgtttttt aattgtgatt acgcattacc ccttcctgca cggttgaagc gaccagcgcg
     6061 ccatcctgag tataaaactc gccgcgaaca aagccccggg cgctggaggc ggaagtgctc
     6121 tccacgctat aaagtagcca ttcattaaaa ttgaacggac gatggaacca catagagtga
     6181 tcgatagtgg cgatctgaat gcccttttcc agaaaaccga tgccgtgagg ctgaagcgcg
     6241 acgggaagga aattcagatc cgaggcgtat cccagtaaat attgatggac gcgaatgtca
     6301 tccggaacgg tgccgttggc gcgaatccat acctgacgca caggcgcgga gacgtgacct
     6361 ttcaacggat tgtgaaattc gacgggacga atttccagcg ggcgatcgca gagaaacttt
     6421 tctttcagaa tcggcggcag taaatgcgcc agcgattgcg cgatttccgt ttctgacggt
     6481 agtccttccg gcccgactgc cgtcggcatg gttttttgat gttcaaaacc cggttccggt
     6541 gcctggaatg aggcggtcat gtaaaagatg ggtttcccgt tctgaatagc ggcaacgcgg
     6601 cgggcgctga agctattccc atcgcgcagc acttctacgt catagataat gggtttttgg
     6661 ctgtcgcctg gccgcagaaa ataactgtgg aatgaatgca ccagtcgcgc ttccggcacc
     6721 gtttctttgg cggcatagag cgcctggccc accacctgac cgccaaatac ctggcgcagc
     6781 cctaagtctt cactttggcc ccgaaagagt ccttcttcaa ttttttccag attcaataat
     6841 gtcagcaaat tattcagtgt ctgactcata catactctcc aggtgacaac gatgccgaag
     6901 cgaggtaggg cagagtataa cgcaattttg caagtggtcc gatgggtaca aaagtctgaa
     6961 taacagacca attccaggca aaaatgagtg acatgtgcca cacttaatca cgttgtattt
     7021 ctgttaacca ctcttccggc ggggggaaag gcctgctggt gcattgatga taaggagaat
     7081 tgaatgaaac tcgtgcacat cgtaagtggt ttagcggttg cgatatctct ggcggcctgc
     7141 gctgataaaa gcgctgatat ccagacgcct gcgccaaacc ctaacatgtc gattacagct
     7201 aaccagtcta ctattcagca acccaatgtt tccggtaccg tctggatccg ccagaaggtc
     7261 gctctgccgc cagatgcggt gctgaccgtg acgctttcag atgcttcgct ggctgatgcg
     7321 ccgtctaagg tgctgtcgca aaaagcggta cgtaccgaag gtaaacaggc gcctttcagt
     7381 tttgtgttgc cgtttaaccc atcagatatt caacctaacg cgcgtattct tctgagcgcg
     7441 gccatcaccg ttgacaataa gctggtattt attaccgata gcgtgaaacc ggtgattaac
     7501 aatggcggca ctaaagcgga tctgacgctg gtaccggtac agcaaacggc ggtgcctgtg
     7561 caggccagcg gcggtgcgac gacgacggtt ccatcgactt cgccgaccca ggtcaatccg
     7621 tcttctgccg ttcctgcgcc tacccagtat taatcctgcg ccaaccctct ccgttacgga
     7681 gagggttaat acacccagcg atagcgttgt aaatcgattt gtccgcttcc cgacaccacc
     7741 acgccttccg ccagtaatgc ctgacgttgc cgctgtagat ccggcccggt aagtgatatt
     7801 gcgccgtggc ggttcaccac ccgatgccat ggtaaagtgc tgccttccgg cagacgtttt
     7861 aaaactccgc cgacctgacg cgccgcccga ggggaaccgg caagccgggc gacatcaccg
     7921 taggtcgtga caaacccttc cgggatcgag gcgacgattt gccagacgcg ttgaggaaat
     7981 gtgtcctgaa tatccataat agaatcctgc gttaatgctt caggataatc tggaataagg
     8041 ggggaggaaa gcccggatgc gcaagaaacc agcatccgat gcctgatagg ttgcaattgc
     8101 acgatatagc agtgataatg cgcctgcgcg ttggttcaca acgctctcaa tgggggctct
     8161 gttggttctc ccgcaacgct actctgttta ccaggtcagg tccggaagga agcagccaag
     8221 gcagatgacg cgtgtgccgg gatgtagctg gcagggcccc cacccaattc tgcctttcca
     8281 cactgttctt ttctgctgtg cgacgttata gccgctgttc cacccaaaga ataaatgccg
     8341 tagcgggtag gggcttactg tataaccagc cctgaccata atgtacgcca tgctggcgta
     8401 gccactgttc ttgcctggtc gtttcgatgc cttctgcgac catcttaagt ttgagcgttt
     8461 tcgccatttc aataatatgc ggcgtgacgt ttttatattc cagcgcatcg acaaaagatt
     8521 tatcaatttt aaggacatcc acatccagat tttgtaagta gctgaggctg gaatagccgg
     8581 tgccaaagtc atcaatataa atggaatgtc ccgcgttacg gtatctggcg acaatgggcg
     8641 cgctggtttt cggatcggcg aactcgcgct ccgttaactc aagcgcgatt tgcgacggag
     8701 aaatttggct acggttcagc agcgtgctta acagcgtcgg gagcgtttcc gacgccagat
     8761 cggatgcctc aagattgatt gaaatatgtt gttcgggatg ggactttaac caactcccca
     8821 tgtcttcaaa aacggtgtcg atgattagcc gggttagcgg ctccgtgagc ccggtttgtt
     8881 cagccagcgc gataaaaatt tccggcgaaa ggaaagtgcc gtccgcctgt tgccagcgag
     8941 ctaaggcttc ggcaccgaca atttttccgc tgctcaggga gacaataggc tgatagtgta
     9001 cgttaatttc gcgattgtct atcgcatcct ggagacggtg gcggggcgat tgtagccgac
     9061 gcaaaatacg cagaataaag gccgcagcca gcagacccgt tacgatgccc gccggtagcc
     9121 agataaacgc ttgtcgatac cagctccttt ccagcggagc ggtcggtgcc cagcttacga
     9181 tagtaatgcc catttccgga aaggggtgga tagcatactg aatgcctcgg ttttccagcc
     9241 gcaggggcgt ctcatggtga atgagcggaa gaatagcgtg gtcaaggtta ccgctgctgg
     9301 caaccacagt attgcgttcc cggccaataa tagcgacgtc aatcggccat gcgccaaacg
     9361 gaatcacatc gataaaggac gccgggtcga tcatcacgat atagctgtcg ctcccgagtg
     9421 ccgccatata gcgttttata cccagatcgt tttgcgccgt aaaccaggcg cgataaccgt
     9481 cgcgagtgat tttcatgggc ggagggaaag cgggaatatg gctctctttt tcaagtgagg
     9541 agcaaacggg aatcgaattt ttaagataca gaacttcctg gacataccga aagctataag
     9601 acacgcggcg catggcgagt aaatgggcgc tgctgcaggg ctcgccttta aaggaggcaa
     9661 tatgcgttaa cgcggctttt gcctggtcac tgaccctttc tgtacgtagc gccacccggg
     9721 acgagaagat atccagctct tcgttaaacc ttttttcaac ttgacggtgc gccagccaca
     9781 ggctcaatcc tatcgggaaa aggacagaca ggataagcac tcccgttacc aggctgacca
     9841 gatgtcgtgt tgtcacagtg atgtccttat aaacacagcg tagagaaagt atatccgatc
     9901 gtaaatcgcg ccctcgaatg ataaagctat tttatcgatt ttacagatac aggggccaga
     9961 ctaacgcgtt acgccacgtt gcttttgccg ccaggaagag atcgtgaatg tttaccggtt
    10021 gaaaaaggag cgttgatagc gtattttatt gttatgttat aacataattg agagagcgca
    10081 atgaaacctg atattcatcc tgtataccga accgtcgtat ttcacgacac cagcgcaaat
    10141 gaatatgtga aagtgggatc aactatcaaa actgaacgtg aaatcgaact ggacggcgtg
    10201 acatatccgt atgtcactat tgatgtgtca tcaaaatcgc atccttttta taccggtaga
    10261 cagaaaacgt ttgatagcga aagtagcgcc gcacgcttcc agaaacgttt tggtcatttt
    10321 atcggcgcta aacgggggta aatgaaatgc aggtgttaaa ctcacttcgc aatgcaaaac
    10381 aacggcatcc ggattgccag atagtcaaac gcaaaggacg cttatacgtg atttgtaaaa
    10441 caaatccgcg ttttaaggcg gttcaggggc gtaaaaaaag acgttaaaaa accaacagtt
    10501 cagggaaagc agtgcgtacc agggagggtg cgcacttttt tattaccggc tggcttctgc
    10561 gcgggccagc gtaaaaatat cgtagaagga aagttcgccc ttacgggcaa ccattttttg
    10621 cagctggact ttatgttcat tatccacctg tggagactga agaatcgtct caatgagcgt
    10681 ggggggaaca aagcgggtgt tgtaccattc gccgttgtaa cagacccgga ggtccagcac
    10741 atcgatgtcg ttatagtgat aacgcggggc gatgtcgaaa aagaagaagc cattaaatgc
    10801 gataaataac accactaaca gccacactga ccccaccagc gtttctgatt gcagcatgac
    10861 cgccagcgtc gcaaaccagg ctgcatacat cgcgataaat aacccaggat gcttgcggat
    10921 aaaacttata ctaaaacgcg gcctgttatc gcgtttttca cggacgttta agtcatcaat
    10981 agtttcgcta agcaggcgct gtatctctgt catcttttgc cttcatgatt tctgcgacat
    11041 agggggtagt aacagcccat tttaaaggga ggtgtaacgt gaaaaaagta acagattaac
    11101 cacgaattag cataacagtt atcatttgaa ctacaatttt ttaatgattc gcgccggatt
    11161 tccgcctacc acgacgtctg gcggtacgtt ttttgtcacc acagcgcctg aagcgacgac
    11221 gacgttatcg ccgatggtta cgccaggatt aacgacggct cgtccgccta tccagacgtt
    11281 atttccgata gtgacgggtt tacctaattc tctgccgctg ttgcgttcga cggcgtccag
    11341 cgggtgcgtg gcggtataga tatgtacccc tggcgcgagc atacaattat cgccaatatg
    11401 aattgggcaa acatcaagca tgacgcagtc gaagttagcg taaaaggagt gaccaagaaa
    11461 aatattatag ccgtagtcgc aacggaagga aggttcaata taggcgtctt cgcatcgacc
    11521 caacaggtcg cgtaaaatcg cctgacgctt atttatttca tcaggcgtag tataattgta
    11581 ttgatggatg agttgacgcg cccgcagtcg atcctggcat aaagtttcat cggtcgggca
    11641 atacagtgcc ccagcgatca ttttttgttt ttcgtcactc atcgcgcgct ccccttggtg
    11701 gatattatcg caatagaagc aataataaag tattagaggg aacgttccct gctattggta
    11761 tgtgatctat atcactgttc tataatagcc cgttgtgtta ttagccagaa cgaggaggca
    11821 gataacacct gcgtgttctc taaaaagtaa tgtagcgtga ttaacgaatg aatttccata
    11881 ctgaagaggg gatcttgtcg tagagtttgt tcatcgtcaa ttctgcaaga cggtgatccg
    11941 cagctgagta aaatacagcc agctcattgt cggacaattc atatttattt ttctcaatga
    12001 cgcgctccag agtgtcaatt gtctgacagc gccgtaaacg catcaaataa tcagttttag
    12061 ttaatggttt atcagacata aattctacct atgattgtaa taatttttaa caagacaaac
    12121 taacaggatt agccctggtg gcgttgacga aacaacggaa caggcggttg cccgatttac
    12181 gccatttttg caaatcctgc gtattaatac catagctgct gaacaacata aaggtgtcgt
    12241 ccaggtattc atctatctgc gcaatcaatt tattgtcttc attgtactta attttataat
    12301 taagcgcgaa agttgcaata tgctctatca gctcattgag ctgcaggttg actgctgagg
    12361 tcgggtcatt aacccagcca tggttgcttt cttcaaggtt tgcaagacag tcatgataca
    12421 gggtttcgca aagaaattta agctgtgcta tatcatgtct tttgggtgag tattcgtcca
    12481 taatgcatcc cctttttagt ggcttaaact aaccgaacac cttcgggatg gatacaacta
    12541 actaacctgg tacttcccac gtcaccttat gatttaacta taatctactc taaaaaactt
    12601 ttcatcgtca tattactaaa aattacaatt gcgtgaaagc cgtgtgtcgc catacttttt
    12661 cgaattttaa cagtgaacgt cggtcgcc
//
LOCUS       DAJVSD010000122        12612 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.122, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000122 DAJVSD010000000
VERSION     DAJVSD010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 12612)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12612)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12612
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.122"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            263..2656
                     /gene="malP"
                     /locus_tag="OQP62_002725"
     CDS             263..2656
                     /gene="malP"
                     /locus_tag="OQP62_002725"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin phosphorylase"
                     /protein_id="HCS1722240.1"
                     /translation="MSQPTFNKDQFQAALTRQWQRFGLLSASDMTPRQWWQAVSGALA
                     ELLSAQPVAQPTKGQRHVNYISMEFLIGRLTGNNLLNLGWYQDVSDVLKAHDINLTDL
                     LEEEVDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVEGKQMEAPD
                     DWHRGSYPWFRHNEALDVQVGIGGKVTKEGRWKPGFVITGQSWDLPVLGYRNGVAQPL
                     RLWQATHAHPFDLTKFNDGAFLRAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQ
                     CACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLLDEHQMSWDDAW
                     AITSKTFAYTNHTLMPEALECWDERLIKALLPRHMQIIKQINDRFKALVDNTWPGDKQ
                     VWAKLAVVHDRQVRMANMCVVSGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTN
                     GITPRRWIKQCNPQLAALLDKTLKKEWANDLDQLINLEKYADDATFRQQYRDIKRANK
                     ERLVKFIQARTGIEISSHAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVP
                     RVFLFGAKAAPGYYLAKNIIFAINKVAEAINNDPAVGDKLKVVFLPDYCVSAAEMLIP
                     AADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVE
                     EVKALKAKGYDPVKWRKKDKVLDAVLKELESGQYSDGDKHAFDQMLHSLGKQGGDPYL
                     VMADFAAYVEAQKQVDALYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAKR"
     gene            2666..4747
                     /gene="malQ"
                     /locus_tag="OQP62_002726"
     CDS             2666..4747
                     /gene="malQ"
                     /locus_tag="OQP62_002726"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000428711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HCS1722241.1"
                     /translation="MENKRLDSAALAAGISPSYINAHGKPQSIGAETKRRLLAAMHGT
                     TTGPQAVVPNVKVYTAGKKMALPVEGRGEFAWLLTTEEGEHYKGRVTGGKKLNLPATL
                     PEGYHTLTLTQDEQRTHCRIIVAPPRCYEPQALLEGKKLWGACVQLYTLRSEKNWGIG
                     DFGDLKSMLVDVATRGGAFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVE
                     DFRLSEEAQAWWQMPATQQKLRQARDAQWVDYATVTALKITALRMAWTRFAARDDAQM
                     AEFRHFIAREGESLYWQAAFDALHAYQVKEDGQRWGWPAWPEAYQSVESPAVKQFCEA
                     HREEVEFYLWLQWLAWRQFAACWDTCQSFKLPIGLYRDLAVGVAEGGAETWCDRELYC
                     LKASVGAPPDILGPLGQNWGLPPMDPHIIVARAYEPFIDLLRANMQNCGALRIDHVMS
                     LLRLWWIPYDETADQGAYVHYPVDDLLSILALESQRHRCMVIGEDLGTVPVEIVGKLR
                     DSGVYSYKVLWFENDLEKNFRAPGAYPQQSMAVASTHDLPTLRGYWECGDLTLGKALG
                     LYPDEVILRGLYEDRERAKQGLLDALHKYGCLPKRAGHKALLMSMTPTLNRGLQRYIA
                     DSNSGLLGLQPEDWLDMADPVNVPGTSDQYKNWRRKLSASLEAMFADEGVNKLIKDLD
                     KRRKAAAKKKK"
     gene            complement(4866..6182)
                     /gene="gntT"
                     /locus_tag="OQP62_002727"
     CDS             complement(4866..6182)
                     /gene="gntT"
                     /locus_tag="OQP62_002727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate transporter"
                     /protein_id="HCS1722242.1"
                     /translation="MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLD
                     KVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVV
                     LTGFTVGFALFYEVGFVLMLPLVFTIAAAANIPLLYVGVPMAAALSVTHGFLPPHPGP
                     TAIATIFHADMGKTLLFGTILAIPTVILAGPVYARFLKGIDKPIPEGLYSAKTFTEEE
                     MPGFGVSVWTSLVPVILMAMRAVAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFT
                     FGLNRGRSMDQINDTLVSSIKIIAMMLLIIGGGGAFKQVLVDSGVDKYIASMMHETNV
                     SPLLMAWSIAAVLRIALGSATVAAITAGGIAAPLIATTGVSPELMVIAVGSGSVIFSH
                     VNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLIGCLLLGMVV"
     gene            complement(6559..7134)
                     /gene="nfuA"
                     /locus_tag="OQP62_002728"
     CDS             complement(6559..7134)
                     /gene="nfuA"
                     /locus_tag="OQP62_002728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016942932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S biogenesis protein NfuA"
                     /protein_id="HCS1722243.1"
                     /translation="MIRISDAAQAHFAKLLANQKEGTQIRVFVINPGTPNAECGVSYC
                     PPDAVEATDTALKFDLLTAYVDELSAPYLEDAEIDFVTDQLGSQLTLKAPNAKMRKVA
                     DDAPLMERVEYALQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK
                     EGIEKQLLNEFPELKGVRDLTEHQRGEHSYY"
     gene            complement(7193..7876)
                     /gene="gntX"
                     /locus_tag="OQP62_002729"
     CDS             complement(7193..7876)
                     /gene="gntX"
                     /locus_tag="OQP62_002729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein GntX"
                     /protein_id="HCS1722244.1"
                     /translation="MLTVPGLCWLCRMPLALSHWGICSVCARAVRQRVSLCPQCGLPA
                     GHPSLPCGRCLQKPPPWQRLVSVSDYTPPLSLLVHQLKFTRRSEIAAALARLLLQEVL
                     MARRSTGLPLPDRIVSVPLWSRRHWRRGFNQSDLLCQPLAHWLGCAWDSQTITRVRAT
                     ATQHHLSARLRKRNLKNAFRLELPVQGLHMVIVDDVVTTGSTVAEIAQLLLRNGAATV
                     QVWCLCRTL"
     gene            7914..8684
                     /gene="bioH"
                     /locus_tag="OQP62_002730"
     CDS             7914..8684
                     /gene="bioH"
                     /locus_tag="OQP62_002730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl ester esterase BioH"
                     /protein_id="HCS1722245.1"
                     /translation="MNDIWWQTYGEGNCHLVLLHGWGLNAEVWHCIREELGSHFTLHL
                     VDLPGYGRSSGFGAMTLEEMTAQVAKNAPDQAIWLGWSLGGLVASQMALTHPERVQAL
                     VTVASSPCFSAREGWPGIKPEILGGFQQQLSDDFQRTVERFLALQTLGTETARQDART
                     LKSVVLAQPMPDVEVLNGGLEILKTVDLREALKNVNMPFLRLYGYLDGLVPRKIAPLL
                     DTLWPHSTSQIMAKAAHAPFISHPAAFCQALMTLKSSL"
     gene            complement(8720..9646)
                     /locus_tag="OQP62_002731"
     CDS             complement(8720..9646)
                     /locus_tag="OQP62_002731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HCS1722246.1"
                     /translation="MATSTTSTPHDAVFKQFLCHPDTARDFLEIHLPSTLRQICNLNT
                     LRLESGSFIEEDLRPHYSDILWSLETSEGDGYIYVVIEHQSTPDAHMAFRLMRYAMAA
                     MQRHLEAGHKTLPLVVPMLFYHGNRSPYPFSLCWLDEFADPVMARKLYATAFPLVDIT
                     VVPDDEIMRHRRVALLELIQKHIRQRDLMGLVEQLVALLVKGYANDTQLQSLFNYMMH
                     TGDAARFNTFIRQVAMRIPQHKEKIMTIAERLRQEGHRNGLQKGLQQGKQEGQRLAAL
                     RIARSMLNDGFDRDTVLRVTGLAPADLASESH"
     gene            complement(9881..10117)
                     /gene="feoC"
                     /locus_tag="OQP62_002732"
     CDS             complement(9881..10117)
                     /gene="feoC"
                     /locus_tag="OQP62_002732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[Fe-S]-dependent transcriptional repressor FeoC"
                     /protein_id="HCS1722247.1"
                     /translation="MASLIQVRDLLALRGRMEATQISHTLHAPQPMIDAMLNQLEIMG
                     KAVRIPEEPDGCLSGSCKSCPEGKACLREWWALR"
     gene            complement(10130..12448)
                     /gene="feoB"
                     /locus_tag="OQP62_002733"
     CDS             complement(10130..12448)
                     /gene="feoB"
                     /locus_tag="OQP62_002733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(2+) transporter permease subunit FeoB"
                     /protein_id="HCS1722248.1"
                     /translation="MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ
                     FATTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL
                     YLTLQLLELGIPCIVALNMLDIAEKQQVRIDVDALSTRLGCPVVPLVSTRGRGIEALK
                     LAIDRHNANDNVELVHYAQPLLREAGFLADAMAQEMPLQQRRWLGLQMLEGDIYSRAY
                     AGEAAQNLDTSLARLKDEMDDPALHIADARYQCIAAICDVVSNTLTAEPSRFTRAVDK
                     IILNRFLGLPIFLFVMYLMFLLAINIGGALQPLFDAGSVAIFIHGIQWIGYTLHFPDW
                     LTIFLAQGLGGGINTVLPLVPQIGMMYLFLSFLEDSGYMARAAFVMDRLMQALGLPGK
                     SFVPLIVGFGCNVPSVMGARTLDAPRERLMTIMMAPFMSCGARLAIFAVFAAAFFGQN
                     GALAVFSLYVLGIVMAVLTGLMLKHTIMRGEASPFVMELPVYHVPHIKSLIIQTWQRL
                     KGFVLRAGKVIIIVSIFLSAFNSFSLSGKIVDNINDSALASVSRVITPVFKPIGVHED
                     NWQATVGLFTGAMAKEVVVGTLNTLYTAENIQDEAFNPADFHLGDELLGAVDDTWQSL
                     KDTFSLSVLANPIEASKGDGEMATGAMGVMDQKFGSAAAAYSYLIFVLLYVPCISVMG
                     AIARESSRGWMSFSILWGLNIAYSLATLFYQVTSFSQHPTYSLICILAVIVFNVVVLS
                     LLRRARSRVDIELLATRKSVTSCCSGTAGNCH"
     gene            complement(12467..>12612)
                     /locus_tag="OQP62_002734"
     CDS             complement(12467..>12612)
                     /locus_tag="OQP62_002734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FeoA domain-containing protein"
                     /protein_id="HCS1722249.1"
                     /translation="LGMLPGSSFNVVRVAPLGDPIHIETRRVSLVLRKKDLALIEVEA
                     VSC"
BASE COUNT         2947 a         3339 c         3667 g         2659 t
ORIGIN      
        1 aactattttg gcgttcatat aatcttcgaa aatatccctc cgcggtttac tgttatttct
       61 gtttattcat ttgattatgc gtaacactgg gtgtcgttga caggaatcgg cgcgtttata
      121 caggggtaag tggcggcgat cacactttta tgctcatccc cgctcctcct ccctccctaa
      181 tcagtgccgg gaggaggaag gtcaacatcg agcctggcaa actagcgata acgttgtttt
      241 attacccgag gacggatttc ctatgtcaca gccaaccttc aataaagatc aattccaggc
      301 cgccctgacg cgtcagtggc agcgtttcgg tttactgtcg gcgtccgaca tgacgcctcg
      361 tcagtggtgg caggccgtta gcggcgcgct ggcggaatta ctgagcgcgc aaccggtagc
      421 gcagccgacg aaaggccagc gtcatgtgaa ctacatttcg atggaatttt tgattggccg
      481 cctgacggga aataacctgt taaatctggg gtggtaccag gacgttagcg atgtgctgaa
      541 agcgcacgat attaatctga ccgatctgct ggaagaggaa gtcgatccgg cgctcggcaa
      601 cggtggtctg ggacgtctgg ccgcctgctt cctcgattcg atggccaccg tcgggcagtc
      661 cgctacgggc tatggtctga actaccagta tgggctgttc cgtcagtcat ttgttgaagg
      721 caagcagatg gaagcgccgg atgactggca tcgcggcagc tatccgtggt tccgccacaa
      781 cgaggcgctg gacgtccagg ttggaatcgg cggtaaagtc accaaagaag ggcgctggaa
      841 accaggtttt gtgattacag gccagtcctg ggatctgccg gtgttaggct atcgtaacgg
      901 cgtcgcgcaa ccgctgcgtt tgtggcaggc gacccacgcg catccgtttg atctgaccaa
      961 attcaacgac ggcgctttcc tgcgggcgga acagcagggt atcgatgcgg aaaaactgac
     1021 gaaggtgctt tatcccaacg ataaccacac ggcgggcaaa aaactgcgcc tgatgcagca
     1081 atacttccag tgcgcctgct cggtagcgga tattctgcgc cgccatcatc tggccggacg
     1141 caagctgcat gagctggcgg attatgaggt cattcagcta aatgataccc acccgactat
     1201 tgccatccct gaactgctgc gcgtattgct ggatgaacac cagatgagct gggatgacgc
     1261 ctgggctatc accagcaaaa ccttcgccta caccaaccac accctgatgc cagaagcgct
     1321 ggagtgctgg gatgagaggt taatcaaagc gctgttgccg cgtcatatgc agattatcaa
     1381 gcagattaac gatcgcttta aggcgctggt cgataacacc tggcctggcg ataagcaggt
     1441 atgggcaaaa ctggcggtgg tgcatgaccg tcaggtgcgc atggccaata tgtgcgtggt
     1501 cagcggcttt gcggtcaacg gtgtggcggc gctgcactcc gatctggtgg tgaaagatct
     1561 gttcccggaa tatcaccagc tttggccgaa caaattccac aatgtcacca acggcattac
     1621 accgcgtcgc tggattaaac agtgcaatcc gcagcttgcg gcgttgctgg ataaaacgct
     1681 gaaaaaagag tgggctaacg atctcgacca gttgatcaac ctcgaaaaat acgctgacga
     1741 cgccacattc cgtcaacaat atcgcgacat caaacgggcg aacaaagaac ggctggtgaa
     1801 attcatccag gcccgtaccg ggattgagat ttcgagccat gcgatttttg atattcagat
     1861 caaacgcctg cacgagtaca agcgtcagca tctgaatctg ttgcatattc tggcgctgta
     1921 caaagagatc cgcgaaaacc cgcaggctga ccgcgtaccg cgcgtattcc tgtttggcgc
     1981 gaaggcggcg ccgggctatt acctggcgaa gaacatcatt tttgctatca ataaggttgc
     2041 ggaagccatt aataacgacc cggcggtggg tgacaagctg aaggtggttt tcctgccgga
     2101 ttactgcgtc tcggcggcgg aaatgctcat tccggcggcg gatatttccg agcaaatttc
     2161 tactgccggg aaagaggcgt ccggcaccgg caacatgaaa ctggcgctga acggggcgtt
     2221 gacagtggga acgctggacg gcgctaacgt tgaaatcgct gaaaaggtgg gtgaagagaa
     2281 tatctttatc tttggccata ctgtggaaga ggtcaaggcg ctcaaagcca aaggctacga
     2341 tccggtgaaa tggcgtaaaa aagacaaagt gctggatgcg gtactaaaag agctggaaag
     2401 cggtcaatac agcgatggcg ataaacatgc ctttgaccag atgctgcata gcctcggcaa
     2461 acaggggggc gatccgtacc tggtcatggc ggacttcgcc gcttatgtcg aggcgcaaaa
     2521 gcaggtggat gcgctgtatc gcgaccagga agcgtggacg cgcgccgcga tcctcaatac
     2581 cgcgcgctgc ggtatgttca gttccgatcg ctctattcgc gattatcagg cccgtatctg
     2641 gcaggcaaaa cgctaaggga gcgcgatgga aaataaacgt ctcgatagtg ccgcgctggc
     2701 ggcggggatc agccccagtt acatcaatgc tcatggcaaa ccgcagtcta ttggcgctga
     2761 aaccaagaga cgtttgctgg cggcgatgca cggcacgaca acaggaccac aggcggtcgt
     2821 gccgaatgtg aaggtttata ccgcgggtaa aaaaatggcg ttgccggtag aggggcgcgg
     2881 tgagtttgcc tggctgctga ctacggaaga gggcgagcat tacaaagggc gcgtgacggg
     2941 cggtaaaaaa cttaacctgc cggctacgtt gccggagggc taccacaccc tgacgttgac
     3001 ccaggatgaa cagcgtacgc actgccgtat tatcgttgcc ccgccgcgat gctatgagcc
     3061 gcaggcgctg ctggagggga aaaaactgtg gggggcctgc gtccagcttt atactctgcg
     3121 ttcagaaaaa aactggggta ttggcgattt cggcgatttg aagtcgatgc tggtcgacgt
     3181 ggcgacacgc ggcggcgcgt ttatcggcct gaacccgatc cacgcgcttt atccggcgaa
     3241 tccggagagc gccagtccct acagcccctc gtctcgtcgc tggctgaacg tgatatatat
     3301 cgacgtcaac gccgtcgaag atttccgcct gagcgaagag gcgcaggcat ggtggcaaat
     3361 gcccgccaca cagcaaaagc tgcgacaggc gcgcgatgcg caatgggtgg attacgctac
     3421 cgttaccgcg ctgaaaatca cggcgctgcg gatggcgtgg acgcggtttg ccgctcgcga
     3481 cgatgcgcaa atggcggagt ttcgtcactt tatcgcccgc gaaggcgaaa gcctttactg
     3541 gcaggcggca ttcgacgcgc tgcatgcgta tcaggtgaaa gaggatgggc agcgctgggg
     3601 ctggccagcc tggccggagg cgtaccagtc ggtagagtct cccgctgtaa aacaattctg
     3661 tgaagcgcac cgcgaagagg tggagtttta tctctggctt cagtggctgg cctggcgcca
     3721 attcgccgcc tgctgggata cctgccagag ttttaaacta ccgattggtc tgtaccgcga
     3781 tctggcggtt ggcgtagcgg aaggcggcgc ggaaacctgg tgcgaccggg agctgtactg
     3841 cctgaaagca tctgtcggcg cgccgccgga tatcctcggc ccgctcggtc agaactgggg
     3901 gctgccgccg atggacccgc atatcattgt cgcccgggcg tatgagccct ttatcgacct
     3961 gctgcgcgcc aatatgcaaa actgcggcgc gttgcgcatt gaccatgtca tgtcgttgct
     4021 gcgcctgtgg tggataccgt atgacgaaac agcggatcag ggggcttacg tccattatcc
     4081 ggtagatgat ttgctttcta ttctggcgct ggagagccaa cgtcaccgct gtatggtgat
     4141 aggcgaagat ctggggacgg tgccagttga gattgtcggc aagctgcgcg atagcggggt
     4201 ctattcttat aaagtgctgt ggtttgaaaa tgaccttgag aaaaacttcc gcgcgccagg
     4261 cgcatatccg caacaatcga tggctgtcgc ctcgacgcac gatctcccca cgctgcgcgg
     4321 ctattgggaa tgcggtgacc tgacgttggg taaagctctg gggctttatc cggatgaagt
     4381 gattctgcgc gggctgtatg aggatcgcga gcgggcgaaa caggggctat tggacgcgct
     4441 gcataaatat ggctgtctgc caaaacgcgc cgggcataag gcattgttaa tgtcgatgac
     4501 gccaacgcta aatcgcggac ttcagcgcta tatcgccgac agtaacagcg gtctgttggg
     4561 gcttcagccg gaggactggc tggatatggc cgatccggtt aacgtaccgg gcaccagcga
     4621 tcagtataaa aactggcggc ggaaattgtc tgcatctctt gaggctatgt ttgccgatga
     4681 gggcgtaaac aagctgatta aggatttgga taagcgccga aaagcggccg cgaagaagaa
     4741 gaagtaataa agccggggat ttccccggct ttatgatggt gagagcacgt aggcctgata
     4801 agcgcagcgc catcaggcaa ttctggcgca cattgctgcc ttatccggcc tgcaaaccgc
     4861 ctcgcttaaa ccaccatacc cagtagcaga cagccgatca ggccgcagac ggagatgatc
     4921 gtttccagca tcgaccagga tttaatggtc tcgccgatag tcaaattgaa atactctttg
     4981 aacagccaga agcctgggtc gttgacgtga gagaaaatca cgctcccgga accgactgcg
     5041 ataaccatca gttcaggact aacgccggtc gtggcgatca gtggcgccgc aatgccgcct
     5101 gcggtaatcg ccgcgacagt cgcagagccc agcgcgatac gcagcaccgc cgcgatagac
     5161 cacgccatca acagcggaga gacattggtt tcatgcatca ttgaagcgat gtatttatcc
     5221 acgccgctat cgaccagcac ctgcttgaac gcgccgccgc cgccgatgat cagcagcatc
     5281 atggcgataa ttttgatgga agagaccagc gtatcgttaa tctgatccat tgaacgcccg
     5341 cggttcaggc caaaggtgaa cattgcaatc agtacggcaa tcaacgtagc cattaccggg
     5401 tcgcccagga actcggcaac gggcaggaaa gcgtggcctt ttggcagaat catctcggca
     5461 accgcacgca tcgccatcag aatcaccgga accagcgacg tccagacgct gacgccaaag
     5521 cccggcatct cttcttccgt aaaggttttc gcgctgtaca ggccttccgg gatcggctta
     5581 tcgatgcctt tcagaaaacg ggcgtaaacc ggtccggcaa ggatcacggt cgggatcgcc
     5641 agaatcgtac caaacagcag cgttttaccc atatcggcat ggaaaatcgt ggcgatcgcg
     5701 gttggacccg ggtgcggcgg caggaagccg tgtgtgacgg agagcgccgc ggccatcggc
     5761 acgccgacgt acagtaacgg gatattcgcc gctgcggcaa tggtgaatac cagcggcagc
     5821 atcagaacga agcccacttc atagaacaga gcgaagccga cggtaaagcc ggttaacact
     5881 acggcccact gaatatgctt tttaccaaat ttcgcgatca gggtagtggc gatacgttga
     5941 gcgccgccgc agtcggcaag cattttgccc agcatggcgc cgaaccccat aatcagggcc
     6001 agactgccaa gcgtaccgcc gacaccggct ttgatggagc cgatgacttt atccagcggc
     6061 attccctgca tcaacccgac agcgagcgct accaggacaa gggcgataaa tccgttcatt
     6121 ttgaagcgga tcatcagaag aagtaacaag ataacaccga tagcaacgat gactaatggc
     6181 atgatttacc tggcctttac tttgttatgg gtaacgtcat tgtttcgacg acaaattcct
     6241 gttgttcccg acgggaacag agtcgcaata gcaccaatac tgattaccgt tgaaacgaat
     6301 gagcgtagtc agatgttata tggatgttag gtgcccataa gaatgatacg ggtaacatat
     6361 gggtgttgaa aatgaccctg gcaggcaaaa tttaaattat gagacacagg tcatgttatc
     6421 ggcgaaagaa gaagaaccat tgttctgaga tgtggctgat ggcgcagaat ggcggcgtag
     6481 acgccttatt cggcctacgg tggggcagac aaggcccgac aggcgcaagc gccatcgggc
     6541 atggatgcgg ggaaaatctt agtagtatga gtgctcgccg cgctggtgtt cggtcagatc
     6601 gcgaacccct ttcagttccg ggaattcatt cagcaactgt ttctcgatcc cttctttcag
     6661 cgtgacgtca accatcgagc aaccgttaca accgccgcca aactgcagaa ttgcatagcc
     6721 ttcatcggta atttccatca gcgagacgcg accgccgtgg cccgccaact gcgggttaat
     6781 ctgcgattgc agagcatatt ccacgcgctc catcagcggc gcgtcatcgg ccactttgcg
     6841 catcttcgcg tttggcgctt tcaatgtgag ttgagaacct agctggtcgg tcacgaaatc
     6901 aatttccgcg tcttccagat agggcgcgct cagctcgtcg acataagcgg tcaacaggtc
     6961 aaatttcagt gcagtatcgg tggcttctac ggcgtcgggc ggacaataag aaacgccgca
     7021 ctctgcgtta ggagtgccgg gattaatgac aaatacgcgg atttgcgtcc cttctttctg
     7081 atttgccagc agtttggcaa agtgcgcttg tgcagcatcg gaaatacgga tcatagtaat
     7141 ggcctaatag ttgactattt tagttggtta taatacgccc gtcatcgagg ctctacaagg
     7201 ttcgacacag gcaccatacc tggacagtcg ctgcgccgtt gcgcaaaagc agttgcgcga
     7261 tttccgcgac ggtacttccg gtagtgacga catcatccac aataaccata tggagaccct
     7321 gtaccggcaa ttcaaggcga aacgcgtttt tcaaattgcg cttacgtaac ctggcgctga
     7381 gatgatgttg tgttgcggtc gcccgtaccc gcgtgatggt ctggctgtcc cacgcgcagc
     7441 ccagccagtg cgctaacggt tggcataaca gatcgctttg gttaaatccc cgccgccagt
     7501 gtcggcgcga ccagagcgga acgctgacga ttctgtcggg aagcggcaag ccagtgctgc
     7561 ggcgcgccat aagtacttcc tgcaacagta gacgcgccag agcggcggca atttcgctgc
     7621 ggcgggtaaa tttaagctga tgcaccagta aactcaaggg cggcgtatag tcactgacgc
     7681 tcaccagacg ctgccagggc ggcggttttt gcaggcagcg accgcagggg agcgaaggat
     7741 gcccggcagg taatccgcat tgcggacaca ggctgacgcg ctgacgaacg gcgcgcgcgc
     7801 atacggagca aatcccccag tggcttaacg ccagcggcat tcggcatagc cagcataatc
     7861 ccggtactgt tagcataggt gcatccttgt tagacaaaag agaacagtaa ctgatgaatg
     7921 acatctggtg gcagacctac ggcgagggaa attgtcatct tgtgctgctg cacggatggg
     7981 gattgaacgc ggaggtgtgg cattgcattc gcgaggaact cggctcgcat tttacgctgc
     8041 atctggtcga cttgccgggc tatggccgta gttcggggtt tggtgccatg acgcttgaag
     8101 agatgacggc gcaggtagcg aaaaacgcgc cggaccaggc tatctggctt ggctggagtc
     8161 tgggcggcct ggtggcgagt cagatggcgc tcacccaccc tgaacgcgtt caggcgctgg
     8221 tgacagtcgc ctcttcgcca tgctttagcg cgcgtgaggg gtggccggga ataaaaccag
     8281 aaatcctcgg cggattccag cagcagctta gcgacgattt tcagcgcacg gtggagcgtt
     8341 ttctggcgct gcaaacgtta gggacggaga cggcgcgtca ggatgcccgc accttaaaaa
     8401 gcgtagtgct ggcgcagcct atgccggatg tagaggtgct caatggcgga ctggaaatct
     8461 taaaaacggt cgatctacga gaagcgctta aaaatgtgaa catgccgttt ttgcgtttgt
     8521 atggttatct ggacggtctg gtgccgcgta aaatcgcgcc tttgctcgat acgttatggc
     8581 cgcacagtac atcacagata atggcgaagg cggcccatgc gccgtttatc tcgcatccgg
     8641 cggcgttttg ccaggcgctg atgacgctaa aatcatcgct gtaaccaggg cgttgccggg
     8701 cccaggccat tctgccagat taatggcttt cagacgccag atcggcaggc gccagcccgg
     8761 taaccctaag cacagtatcg cgatcgaaac catcgtttag catggagcgg gcaatgcgca
     8821 atgcggcgag ccgttggcct tcctgtttgc cttgttgtag ccctttctgt aacccgttac
     8881 gatgtccttc ctgacgtaat ctttctgcga tagtcatgat cttctcctta tgctgtggga
     8941 tacgcatagc cacctggcgg ataaacgtat tgaagcgcgc ggcgtcgcca gtgtgcatca
     9001 tgtaattaaa cagactttga agctgggtgt cattagcgta tcccttaacc agcagggcga
     9061 ccagctgttc gacaagcccc atcagatcac gctggcggat gtgtttttgt atgagttcca
     9121 gcagcgcgac ccgtcggtgc cgcataatct cgtcgtccgg cacgaccgta atatcgacca
     9181 gaggaaaggc ggtggcgtat agcttacgcg ccatcaccgg gtcggcaaat tcatccagcc
     9241 agcataatga gaacggatac gggcttcggt ttccgtggta aaacagcatt ggcaccacta
     9301 atggcaacgt cttatgcccg gcctccaggt gccgttgcat tgcagccatt gcgtaacgca
     9361 tcagccgaaa tgccatatgc gcgtccggcg tactctgatg ttcaataacc acgtaaatgt
     9421 aaccgtcacc ttcacttgtt tccagcgacc aaaggatatc ggaataatgg gggcgtaaat
     9481 cctcttcaat aaagctaccg gactccagcc gtaacgtatt cagattacag atttgacgta
     9541 atgtcgacgg aagatggatt tccaaaaaat cccgtgcagt atcggggtgg cataaaaact
     9601 gtttgaatac cgcgtcatgc ggcgtggatg ttgttgaggt cgccatatcg atccgtcacc
     9661 ggtgaagctc aatggcgtga cactacgcgc agaccgggct gattgcagta gaggattagt
     9721 gcgcttgcga ggcgcgtggg gagataaatg cgcacggcgg taacgctttc atctttgtgg
     9781 aaggcatgac gcaaaattgc ccggcagcgt gacgcgtacc gggcaatata acgcgggata
     9841 aaggccggat aagacgcgtt acgtcgctac ccggcgaagg tcaacgcaag gcccaccatt
     9901 cgcgcaggca ggctttacct tccggacagc ttttacaact gcctgaaagg caaccgtccg
     9961 gttcttccgg gatacgtacc gctttaccca tgatctccag ttgattcagc atggcgtcga
    10021 tcatgggctg cggagcgtgc agcgtatggc tgatctgcgt tgcctccata cgcccccgca
    10081 gcgccagtag atcgcgaacc tgtatcaatg aagccatttt ttacatccct tagtgacaat
    10141 tgcccgcagt gcccgaacaa caggatgtga cgcttttgcg ggttgccagc agttcaatgt
    10201 ctacacggct gcgggcgcgg cgtagcagac ttaataccac aacgttaaag acgattaccg
    10261 ccagaataca gatcaggctg taagtcgggt gctgactgaa gctagtaacc tggtagaaca
    10321 gcgtggcgag cgaataggcg atattcagcc cccacaggat ggagaagctc atccagccgc
    10381 ggctggactc gcgggcgata gcgcccatta ccgagataca cggtacgtaa agcaggacga
    10441 aaatcaggta actgtacgcc gccgcggcgc tgccgaattt ttgatccatc acgcccatcg
    10501 cgccggtcgc catttcgccg tcgcctttac tcgcttcgat cgggttagcc agtacgctca
    10561 ggctaaaggt gtctttcagg ctttgccagg tatcgtcaac cgcgcccagc agttcatcgc
    10621 cgaggtgaaa gtcggcagga ttaaacgctt cgtcctgaat attttcggcg gtgtagagcg
    10681 tgttcagcgt accgacgaca acctctttcg ccatggcgcc cgtaaacaga cccacggtag
    10741 cttgccagtt atcctcatgg acgccgatcg gtttaaagac tggcgtgatg acccggctta
    10801 cagaggcgag ggcggagtca ttaatgttat cgacgatttt gccgctcagc gagaaactgt
    10861 taaacgcgct caggaaaata ctcacgatga taatgacttt accggcgcgt agtacaaaac
    10921 ctttcaggcg ttgccaggtc tggatgatca ggctcttgat atgcggtacg tggtaaaccg
    10981 gcagctccat cacaaacgga gaggcttcgc cacgcataat ggtatgtttc agcatcaggc
    11041 cggttaatac cgccatgaca atacccagca cgtatagcga gaagaccgcc agcgcgccgt
    11101 tttgcccgaa gaaggcggcg gcaaagacgg cgaaaatcgc caggcgcgcg ccacaggaca
    11161 taaacggcgc catcatgatg gtcatcaggc gttcgcgcgg agcgtcaagc gtgcgggcgc
    11221 ccatcacgga aggtacgtta cagccgaagc cgacaatcag cggcacgaag gatttacccg
    11281 gtagtcccag cgcctgcatc aggcgatcca tgacgaaggc cgcgcgcgcc atataaccgg
    11341 agtcttcaag gaaggagagg aacaggtaca tcatcccgat ttgcggcacc agcggcagga
    11401 cggtattgat cccgccgcca agaccttgcg ccaggaagat ggttaaccaa tccgggaagt
    11461 gcagcgtgta gccaatccat tgaatgccat gaataaagat ggcgacggaa ccggcatcaa
    11521 acaggggttg caacgcgccg ccgatgttaa tggcgagcag gaacatcagg tacatcacga
    11581 acaaaaaaat cggtaagccg aggaagcggt tcaggataat tttatcgacc gccctggtga
    11641 agcggctggg ttcggctgtc agggtattgc tgaccacgtc gcaaatagcg gcgatacact
    11701 ggtaacgggc gtcggcgata tgcagcgccg ggtcgtccat ttcgtccttc agacgggcaa
    11761 gggaggtgtc caggttttgc gccgcctcgc ctgcgtaagc ccggctgtag atatcgccct
    11821 ccagcatttg cagacccagc cagcggcgct gttgtaaagg catctcctgg gccatcgcgt
    11881 cggccaggaa acccgcttcg cgcagcagcg gctgggcata atgcaccagt tcgacgttgt
    11941 cgttagcgtt gtgacgatca atggccagtt tcagcgcctc gataccgcga ccgcgagtcg
    12001 ataccagcgg tacgacaggg caacccagac gcgtggacag agcgtcgaca tcaatacgaa
    12061 cctgctgttt ttcggcgata tccagcatgt tgagcgcaac aatacagggg atacccagct
    12121 ccagcagctg cagcgtcaaa tagaggttgc gctccagatt ggaggcgtcc acaacgttta
    12181 tcaacaggtc ggcgtcgccg ctcaggatgt agtggcaggc gatctgttcg tcgagagagg
    12241 tttgtgacga gatggtcgtc agagaatagg tgccgggtaa atctaccagc gtgacctggt
    12301 ggtcagttgt cgcgaactgg ccctctttac gctcgacggt gacgcccgcc cagttcccca
    12361 cgcgctgacg cgcgccggtg agttggttaa ataaggtggt cttgccggaa ttaggattac
    12421 caattaaacc aatggttaat tttttcattt ttatagactc actgtattaa caggaaaccg
    12481 cttccacttc tattaacgcc aaatcctttt tacgcaaaac cagactcacg cgtcgtgttt
    12541 cgatatggat cggatcccct aagggcgcga cgcggacaac attaaatgaa gagccgggca
    12601 acatgccgag cg
//
LOCUS       DAJVSD010000123        12500 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.123, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000123 DAJVSD010000000
VERSION     DAJVSD010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 12500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12500
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.123"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..1209)
                     /locus_tag="OQP62_002735"
     CDS             complement(<1..1209)
                     /locus_tag="OQP62_002735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1722250.1"
                     /translation="MSETKKSGIDYWKQIVVVMSLGWVAIWIYRTVLTPIYPEIQASL
                     DNVSNAEIGAIASFYFFAYCSMQIPCGILVDKFGQKIMLMAGFTLFIIGTLCIAKANG
                     LAMIYTGSLMAGGGCASFFSSAYSLSSANVPQARRALANAIINSGSAIGMGIGLIGSS
                     VLVKNMSMAWQNVLYIVAAILVIMLCVFTLVIRGKAKSDSAQAEKQTQTVTEDEKRAP
                     LFSGLLCSVYFLYFCTCYGYYLIVTWLPSYLQTERGFDGGAIGLASALVAVVGVPGAL
                     FFSHLSDKFRNSKVKVILGLEIVAAAMLAFTVLSPNTTMLMVSLTLYGLLGKMAVDPI
                     LISFVSEQASAKSLGRAFSLFNFFGMSSAVVAPTLTGFISDVTGSKEISFVISACLVV
                     TGTLIFAAVTL"
     gene            complement(1275..2153)
                     /gene="glxR"
                     /locus_tag="OQP62_002736"
     CDS             complement(1275..2153)
                     /gene="glxR"
                     /locus_tag="OQP62_002736"
                     /EC_number="1.1.1.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxy-3-oxopropionate reductase"
                     /protein_id="HCS1722251.1"
                     /translation="MKLGFIGLGIMGSPMAINLARAGHQLHVTTIGPVADELLSLGAV
                     NVETARQVTEFADIIFIMVPDTPQVEEVLFGEHGCAKTSLQGKTIVDMSSISPIGTKR
                     FAQRVNEMDADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLVG
                     GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHG
                     ERMINRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDH
                     SAMVQALELMANHKLS"
     gene            complement(2254..3030)
                     /gene="hyi"
                     /locus_tag="OQP62_002737"
     CDS             complement(2254..3030)
                     /gene="hyi"
                     /locus_tag="OQP62_002737"
                     /EC_number="5.3.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase"
                     /protein_id="HCS1722252.1"
                     /translation="MLRFSANLSMLFTEYDFLERFDKAAQSGFRGVEFMFPYDDDIEV
                     LKRKLRDNNLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGNKKI
                     NCLVGKTPSGFSATEIYDTLVENLRYAANMLAKEDILLLIEPINHFDMPGFHLTGTQQ
                     ALVLIKDIGSDNIKIQYDIYHMQRMEGELTQTMTAWADKIGHLQIADNPRRGEPGTGE
                     INYDFIFNVIKQSDYDGWVGCEYKPLTTAEAGLSWINQYR"
     gene            complement(3043..4824)
                     /gene="gcl"
                     /locus_tag="OQP62_002738"
     CDS             complement(3043..4824)
                     /gene="gcl"
                     /locus_tag="OQP62_002738"
                     /EC_number="4.1.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate carboligase"
                     /protein_id="HCS1722253.1"
                     /translation="MAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIR
                     HILARHVEGASHMAEGYTRAAAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITG
                     QAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLV
                     DLPFDVQVAEIEFDPDMYEPLPVYKPAASRVQIEKALEMLIQSERPVIVAGGGVINAD
                     AAPLLQQFAELINVPVIPTLMGWGCTLDDHPLMAGMVGLQTAHRYGNATLLASDMVFG
                     IGNRFANRHTGSVEKYTQGRKIIHIDIEPTQIGRVLCPDLGIVSDAKAALTLLIDVAQ
                     EMQKAGRLPCRKTWVDECQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTT
                     IGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPQRNVVAISGDFDFQ
                     FLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYG
                     VDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILERVTNISMGDE
                     LDNVTEFEEVADSAKDAPTETCFMKYE"
     gene            complement(4909..5727)
                     /gene="allR"
                     /locus_tag="OQP62_002739"
     CDS             complement(4909..5727)
                     /gene="allR"
                     /locus_tag="OQP62_002739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor AllR"
                     /protein_id="HCS1722254.1"
                     /translation="MTEVRRRGRPGQAEPTAQKGAQALERGIAILQYLERSGGSSSVS
                     DISGSLDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNVGSAYIHNRDVLSVA
                     GPFMHRLMLLSGETVNVAIRNGNEAVLIGQKECKSMVRMCAPLGSRLPLHASGAGKAL
                     LYPLTEEELVGIVVNTGLRRFTPTTLVDLPILLKNLERAREQGYTVDQEEHVVGLNCI
                     ASAIYDDAGSVVAAISISGPASRLTEDRFISQGELVRDTAKDISTALGLKPPVA"
     gene            complement(5806..6287)
                     /gene="allA"
                     /locus_tag="OQP62_002740"
                     /pseudo
     CDS             complement(5806..6287)
                     /gene="allA"
                     /locus_tag="OQP62_002740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459510.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ureidoglycolate lyase"
     gene            6514..7440
                     /gene="allS"
                     /locus_tag="OQP62_002741"
     CDS             6514..7440
                     /gene="allS"
                     /locus_tag="OQP62_002741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator AllS"
                     /protein_id="HCS1722255.1"
                     /translation="MFDPETLRTFISVAETGSFSKAAERLCKTTATTSYRIKLLEENT
                     GVGLFFRTTRSVSLTAAGSHLLSQAKDWLAWLDSMPDELRQVNDGVERQVNIVVNNLL
                     YSPQAVASLLSWLNARYPFTQFHFSRQIYMGVWDSLLYEGFSLAIGVTGTEPLANTFM
                     LDPLGSVQWRFVMSADHPLAHVSGPLTEAQLRRFPAINIEDSARTLTKRVAWRLPGQK
                     EIIVPDMETKIAAHLAGVGIGFVPQPLCQTLIDKNELVSCTIPTMRPPSPLSLAWHKF
                     GGGKAVEDIVKLFTQRQPEIAGFLSIFNTVRC"
     gene            7510..8604
                     /gene="mnmH"
                     /locus_tag="OQP62_002742"
     CDS             7510..8604
                     /gene="mnmH"
                     /locus_tag="OQP62_002742"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HCS1722256.1"
                     /translation="MQDRQKAQDYRALLLADTPLIDVRAPIEFEQGAMPGAINLPLMM
                     DDERAAVGTCYKRQGADAALALGHRLVCGDIRQQRLEAWKAAYQRFPNGYLCCARGGQ
                     RSHIVQRWLQETGIDCPLIEGGYKALRQTAIQATWQLAQKPILLIGGCTGSGKTQLVR
                     QQPNGVDLEGLARHRGSSFGRTLKPQLSQASFENKLAVELLKINARQTLKRWVLEDEG
                     RTIGANHLPECLRERMAQAPIAVVEDPFALRLERLREEYFIRMHHDFTHAYGDGAGWQ
                     AYSEYLHHGLFAIRRRLGLQRFAELTDTLDRALAEQLSSGSTDGHMAWLVPLLNEYYD
                     PMYRYQLEKKAANIVFRGTWQDVANWLKAQ"
     gene            complement(8643..9302)
                     /locus_tag="OQP62_002743"
     CDS             complement(8643..9302)
                     /locus_tag="OQP62_002743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1722257.1"
                     /translation="MDDLLPDLTLAFNETFQMLSISTVLAILGGLPLGFLIFVTDRHL
                     FWQNRFIYLVASVLVNIIRSVPFVILLVLLLPLTQLLLGNTIGPIAASVPLSVAAIAF
                     YARLVDSALREVDKGIIEAALAFGASPMRIICTVLLPEASAGLLRGLTITLVSLIGYS
                     AMAGIVGGGGVGDLAIRYGYYRYETEVMVVTVVALIVLVQVVQMLGDWLAKRADKRDR
                     H"
     gene            complement(9295..10311)
                     /gene="sfbB"
                     /locus_tag="OQP62_002744"
     CDS             complement(9295..10311)
                     /gene="sfbB"
                     /locus_tag="OQP62_002744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence-associated ABC transporter ATP-binding
                     protein SfbB"
                     /protein_id="HCS1722258.1"
                     /translation="MIEIEKVCVDFTAGRGTPTRAVDDVSLHIAAGEIFGIVGTSGAG
                     KSTLLRTLNALTRPSQGRVNVNGVEISALDGKALRQARQRIGMIFQHFNLMHTRTVAK
                     NVAFSLKAAGWERSKIAPRVAEILTLVGLADKANCFPVQLSGGQKQRVGIARAIANHP
                     DVLLCDEPTSALDLETSATILALLRQINAQLGITIVLITHEMNVIKSICDRVAVMSGG
                     KVVESGEVFDVFAHPQHAFTQQLVSHTLNLTLPERLREHLPGQLLKILFIGDSAEQPV
                     LSEVAIKFGVAVNILHGKIEYIGERALGILVVQLTAPHNPTAVAAAVEHIRQRTAQVE
                     VIRG"
     gene            complement(10348..11178)
                     /locus_tag="OQP62_002745"
     CDS             complement(10348..11178)
                     /locus_tag="OQP62_002745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HCS1722259.1"
                     /translation="MGLRQSLRIAASTLLLACGLQFAHADGSPQTIVFGVAPGPYGDM
                     VKQAIAPTLKEKGYKVVVREFSDYVQPNMALANGSIDANLFQHTLYFDKFTADKGLKL
                     SKLIVVPTAGMGFYSRKINSLDALKKGDIITLSNDPTNLARGLRFLQSLGLITIKHNI
                     DPTKASERDIASNPKGLVFKPLEAAQLPRTLDGVTGALVNGNFAVAAGLDLSSAIKQE
                     HLDENLKNIIAVRSEDADKPFAKDIVEAVKSPAYRAVIDDPKNIYSAFQKPEWMTATP
                     "
     gene            complement(11435..>12500)
                     /locus_tag="OQP62_002746"
     CDS             complement(11435..>12500)
                     /locus_tag="OQP62_002746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="porin"
                     /protein_id="HCS1722260.1"
                     /translation="QAEITVLKQDPQAGNPLSRLNFTVGGSIRPQFQNMTGNDGANGY
                     KRNGFDGGTRFRFAADYYLFDDISWISYYELGVNIPAVFDWDNHYAKGTTDTTRRMLY
                     TGFKSATWGTLTFGQQNSIYYDVVGVKTDIWDYDMIGQAPGNGINGDYDGSYRTRKSL
                     KYKKSIGNVDLYASYLFSDDYNANNGLNYKRKGGGSLGADYHLTDDLTWGTAWNYTRA
                     EMRGNGNKTYDQNIVGTALSWTPENWTIAAGGGWYQNFMTTKKVSVNDYFAGDAWGLE
                     YFVGYAFPIGQYAVKAIQPYFMGDRIEYVNGRDYLRTDNGVGITFQLDYGFRVDYEHV
                     FTSSTDNLGDMNLVRLRYDF"
BASE COUNT         3108 a         3442 c         2993 g         2957 t
ORIGIN      
        1 taatgtgaca gcagcaaaga tcagcgttcc ggtaaccact aaacatgctg aaatcacaaa
       61 actgatctcc ttcgaccccg ttacatccga aataaatccg gtcaacgttg gggcgacaac
      121 cgctgaactc atgccaaaga aattaaaaag gctgaaagct cttcccagac tttttgccga
      181 agcctgttca gatacaaagg agatcaggat cgggtctact gccattttcc ctagcaagcc
      241 gtatagcgtc aggctgacca tcagcatcgt ggtattcggg gacaaaaccg taaacgccaa
      301 cattgccgcc gccacaattt ccagaccgag aataacctta actttactgt tacggaattt
      361 atctgacaga tggctaaaaa ataacgcccc cggtacgcca accaccgcca ccagagctga
      421 tgccagcccg atagctccgc catcaaatcc tctttcagtc tggagataag aaggcagcca
      481 ggtcactatc aaataataac cgtagcaggt acagaaatag aggaagtaaa cgctacacaa
      541 taaaccagag aataaaggcg cgcgtttctc atcttccgta acggtttggg tttgcttttc
      601 cgcttgcgca gagtcgcttt tggctttacc acgaatgacc agcgtaaaga cgcacagcat
      661 aattactaat atcgcggcca cgatatacag tacattttgc caggccatgc tcatgttttt
      721 tactaatacg ctggaaccga ttaagccaat ccccatccct atagccgacc cgctgttgat
      781 aatcgcgttg gctaatgccc gacgggcctg cggcacgttt gccgaagaga gtgaataagc
      841 cgaactaaag aaagaagcgc atcctccgcc tgccattagc gaccctgtat agatcatggc
      901 caggccattg gctttcgcga tacagagtgt accaataata aaaagcgtaa atccggccat
      961 cagcatgatt ttttgaccga atttatcgac caatattccg caagggattt gcatactgca
     1021 gtaagcaaaa aagtaaaaac ttgcaatggc gcctatttct gcattactta cattgtctaa
     1081 agatgcctga atttctggat aaattggcgt aagcacggtg cgatagatcc aaatcgctac
     1141 ccagcccaga ctcattacga caacaatttg tttccagtaa tcaatcccgg attttttagt
     1201 ttcactcatg ttcttcacct ttacagagtg ttccttgtga acaggtatcg ctgcagccgc
     1261 agcgatacac ataattagga caatttatga ttggccatta attccagcgc ctgtaccatt
     1321 gccgaatgat caagctggct cccgccattt gccgcacagg tattgaataa ttcctggcag
     1381 gtcgccgtat tcggtaaatt cagcgccagc gcttttgcgc tttgcaatgc aagattaagg
     1441 tctttctgat gaagcgcgat tttgaaacca ggctcgaacg tccggttgat catccgctcg
     1501 ccgtgaactt ccagaatgcg tgaagaggcg aacccgccca ttaacgcctg gcgcacgcgt
     1561 accggatcgg cgcctgcttt tgaagcaaac actaaggctt cagaaaccgc ttcaatattc
     1621 agcgcaacaa taatttggtt agccacctta caggtttgcc catccccatt gccgcccacc
     1681 agggtgatat tttttcccag gatgtcaaag agcggtttaa cgcggtcaaa gactttctgc
     1741 tcgccgccga ccataatcga cagagtgcct tcacgcgccc cgatttctcc cccggaaacc
     1801 ggggcatcca ggtaatcagc gtccatttca ttaacgcgct gggcaaaacg tttggttccg
     1861 ataggagaaa tagaactcat atcgacgatg gtttttccct gaagcgatgt tttggcgcaa
     1921 ccgtgttcgc caaataacac ctcttcaacc tgcggcgtat ccggcaccat tatgaagatg
     1981 atgtctgcga attcagtcac ctgacgtgca gtctcaacat ttaccgcccc cagcgagagc
     2041 agttcgtccg cgactggacc aatagtcgta acgtgtaatt gatgaccggc gcgtgccaaa
     2101 ttgatagcca ttggcgagcc cataattccc aggccaataa atcccagttt catatacaac
     2161 ctcttttatt gctttcggtg tttccagatt caggcaacac aatccccttc caacacagtg
     2221 gaaaaaaaag cgctgcccga attattctgc gttttaacgg tactgattaa tccacgataa
     2281 tcccgcttcc gcggtagtca gtggtttata ttcacatcca acccagccat cataatcaga
     2341 ctgtttaatg acattaaaaa taaagtcata attgatttcc ccggtccccg gctcgccgcg
     2401 acgcgggtta tcagcaatct gtaaatggcc tattttatcg gcccatgccg tcatggtttg
     2461 cgttaattcc ccttccatgc gttgcatgtg ataaatatca tactgaattt tgatattatc
     2521 gctgccgata tccttaatta atactaacgc ctgttgagtg ccggtgagat ggaatcccgg
     2581 catatcaaag tgattaatag gttcgataag taataaaatg tcttctttcg ccagcatatt
     2641 tgccgcatag cgcaggtttt cgaccaacgt gtcgtagatc tccgttgcgg agaatcctga
     2701 cggcgtttta cccaccagac aatttatttt cttattgcct aacgcgcgtg catagcggat
     2761 tgcggccgct acgccatcgc gaaactcttc ttcgcgccca ggaatacagg caattccacg
     2821 ttcgccagcc gcccagtcgc cagccggtaa attatgtaac gtatgttcca gattattatc
     2881 cctgagctta cgttttaaca cttcgatgtc gtcatcgtag ggaaacatga attccacgcc
     2941 gcgaaatccc gactgcgccg ctttatcaaa gcgttccagg aaatcatatt ccgtaaacag
     3001 catagaaaga ttggcagaga aacgtaacat cgattacctc ccttactcat atttcataaa
     3061 acaggtttct gttggcgcat ctttcgcact atccgcaacc tcttcaaact cggttacgtt
     3121 atccagttcg tcgcccatgg aaatattggt tacgcgttcc agaatgactt ccaccaccac
     3181 cggaacgcga tattgcgcca tcagcgcttt agcttgttca aatgcaggcg caatatcttc
     3241 cggtttaaag acacgaattg ctttacagcc taacccttct gccactttta catggtcaac
     3301 gccatagcca ttcacttcgc tggagttgat attttcaaag gcgagctgca cgcaatagtc
     3361 catgtcaaat gcgcgttgcg actggcgaat cagaccaaga taagcgttgt taaccagcac
     3421 atggatatac ggaatgttaa actgcgcgcc gacggctaac tcttcaatca ggaactggaa
     3481 gtcgaaatcg ccggaaatcg ccaccacatt gcgttgtgga tcggcagcac aaacccctaa
     3541 tgccgccggg attgtccagc caagaggccc cgcctggccg cagttgatcc agtgtctgtc
     3601 tttaaacaca tgcagcatct gcgctgccgc gatttgcgac aatccaatgg tggtgacata
     3661 gcacacatcg cgaccaaagg ctttgttcat ctcttcatag acgcgctgcg gcttcactgg
     3721 cacgttgtca aagtgggttt tacgcagcaa agtccgttta cgctgctggc attcgtccac
     3781 ccaggtcttc cggcatggca aacgccccgc tttttgcatc tcctgcgcga catcgatcag
     3841 caacgttagc gccgctttgg cgtcagaaac gatgcccaga tccgggcaca acacgcggcc
     3901 aatttgcgtc ggttcaatat cgatatggat gatttttcga ccctgagtat atttctcaac
     3961 ggaccccgta tgacggttgg cgaaacggtt accgatgcca aaaaccatat cggatgccag
     4021 cagagtggcg ttgccgtagc ggtgcgccgt ttgcaggccg accatccccg ccattaaggg
     4081 gtgatcgtcc agggtacagc cccagcccat cagggtaggg atcaccggta cgttgatcag
     4141 ttcggcaaac tgctgcagca gtggcgcggc gtcggcgtta ataaccccgc cgcccgcgac
     4201 aattaccgga cgctcggact gaatcagcat ctccagcgcc ttttcaatct gtactcggct
     4261 ggcggctggc ttatataccg gcagcggctc atacatatcc ggatcgaatt cgatttccgc
     4321 aacctggaca tcaaacggta aatcaaccag cacaggacct gggcggcctg agcgcatcag
     4381 atgaaaagcc tgctgtaata cgcgcggcac cagcgccgcc tcacgaaccg tcactgccat
     4441 cttgctgact ggttttgcaa tcgcttcaat atcgactgcc tggaaatctt ccttgtgcag
     4501 acgcgctcgc ggcgcctggc cggtaatgca taaaatcggg atagagtcgg cagaagcgga
     4561 atagagcgcg gtgatcatgt cggttcccgc cgggccggaa gtgcccaggc agaccccaat
     4621 attacctgcc gccgcacgtg tgtagccctc agccatatgc gaagcgcctt ccacatgacg
     4681 cgccagtata tggcgaatgc ctccatgctt acgcattgca gaatagaagg ggttgattgc
     4741 agccccagga acgccgaatg ctgtggtgat accttctttt tccagcacat acattgccgc
     4801 atccacggct ctcatttttg ccattttatt gctacctctt tttattggaa aaagtttcca
     4861 acttttaaaa attttaaaaa agtcccgctc cagcgagcgg gatgcggctc aggctacagg
     4921 gggttttagc ccaagcgccg tactgatgtc tttcgcggta tcccgtacca gttcaccctg
     4981 gctgataaag cgatcttccg tcagccggga agccggtccc gatattgaga tagcggcgac
     5041 cacgctgccc gcatcgtcat agatagcgga ggcgatacaa ttcagcccga caacatgttc
     5101 ttcctggtca acggtatagc cctgttcacg cgcccgctcc agatttttaa gcaggatagg
     5161 taaatccacc aaagtggtcg gcgtaaaccg ccgcaaacca gtattgacaa cgatccccac
     5221 cagctcttct tcggtgagcg ggtaaagcag cgcttttccg gcgccggaag catgtaacgg
     5281 cagacgactc cctaagggcg cgcacattct gaccatcgat ttgcactcct tttgaccgat
     5341 taacaccgct tcattaccgt tgcgaatcgc tacgttgacc gtctcgccag aaagcagcat
     5401 aagtcggtgc ataaagggcc cggccaccga gaggacatcg cgattatgaa tatacgcaga
     5461 gcccacatta aatacgccta aaccaatatg ccaccagcca agctggctat cctggtacac
     5521 aaaatcagcc gcttgcagta cctttaacag gcgaaacgtc gtagaaagcg gtaaatccag
     5581 gctgccggaa atatcgctaa ctgatgaact gccgccgctt ctttcgagat attgcaatat
     5641 cgctatgccc ctctccagcg cctgagcgcc tttctgcgca gtcggctctg cctgtcctgg
     5701 cctgccgcgt cgtcttactt ccgtcatatt tacgttaact ccggcccaaa atatgagcat
     5761 aaacaatgaa caatatgttc atcttatgca agaaggccaa tagcgtcacg caaaacagag
     5821 ttcatgtgtc gggatacttt caacatcaca gttatcgctg ccaccgcgat ccaccgtcag
     5881 aaaatcggta accgtctgcc acgcaaacag cgggtgatgc catacattac ggtgataatt
     5941 gacgccctgc cgtccattgc taataaacgc ccgcagcgtg gagagatcgg gtttatcatc
     6001 gccgagcgcg acaataacga caaaagcctc gccgttcatc ggcacaaacg cctgcgtacc
     6061 taaaggatga cgttccagtt catgtaccac aataggcatc gcggctggtt gcgccctgtt
     6121 aatactgatc agcgtgcgat cctgctccag aacttcaacc ttcgccaggt cgtgatatcg
     6181 ctcaactaac ccgttgttta tatgaaaaag tcacgttcct gcgtctcaat aacatcgcca
     6241 taggcgctga acgtcttctg atctaacggt aatacctcaa gtttcattat ttttcccttg
     6301 tagctcgatt ccgtttaacc gcggtttgga ctctgtccgg tttcaatacc atgcaatcta
     6361 aaaccttcgg gatttaacat caacataaaa cttggaatat ttttccaaaa gtagatttag
     6421 accacaaatc aaacatggct attatgtaaa actacttaaa aatcatagga aaacaattct
     6481 ggttttatca ggatcgtaag gaggcgtctg acgatgtttg acccggaaac actgcgtacc
     6541 tttatcagcg ttgccgaaac ggggagtttc tccaaagcgg cggagcgcct gtgtaaaacc
     6601 acggcaacta ctagctaccg catcaaactg ctggaggaaa ataccggcgt agggctgttc
     6661 tttcgcacaa cgcgaagcgt ctcgttgacg gcggcgggct ctcaccttct ctctcaggca
     6721 aaagactggc ttgcgtggct ggacagcatg cctgacgagc tacgccaggt taacgacggc
     6781 gtagagcgtc aggtcaatat tgtggtgaat aacctgctct atagcccgca agcggtcgcc
     6841 agtctcttat cgtggcttaa tgcgcgttac cctttcaccc agtttcactt ttcccggcaa
     6901 atttatatgg gcgtctggga ttcgctcctg tatgaaggtt tttcgctggc gattggcgta
     6961 actggcaccg agccgttggc taataccttt atgctcgacc ctttaggttc cgtacaatgg
     7021 cgttttgtga tgtccgcgga tcatccttta gctcacgtca gcgggcctct aacagaagcg
     7081 cagttgcgcc gtttcccggc aattaatatc gaagacagcg cgcgtacgct gaccaagcgg
     7141 gtagcctggc gccttccggg gcagaaggaa attatcgtgc ctgatatgga aaccaaaatc
     7201 gccgctcatc tggcaggcgt cggtatcggt tttgttccgc agccgctttg tcaaacgctg
     7261 atcgacaaaa acgaactggt gagctgtacc atccctacga tgcgtccgcc ctcaccgtta
     7321 agcctcgcct ggcataaatt tggcggaggc aaagcggtag aagacattgt gaaattattt
     7381 acccaacgac aacccgaaat agccggtttt ttatccattt tcaacacggt acgctgttaa
     7441 aaatcaagcc actttgcgaa ttggcgcgta aaatagcgca aaggatgatt taaggttacg
     7501 ttttacgtta tgcaagacag acaaaaagca caggactatc gcgcactcct ccttgccgat
     7561 acgcctttaa ttgatgtacg cgcgccgatt gagtttgaac agggcgccat gccgggcgct
     7621 atcaacctgc cattgatgat ggacgacgag cgggccgccg tcggcacctg ctacaaacgt
     7681 cagggcgcgg atgcggcgtt agcgctgggg catcggctgg tttgcggcga cattcgccag
     7741 cagcggcttg aggcctggaa agccgcgtat caacgtttcc ccaacgggta tctgtgctgc
     7801 gcacgcggcg gtcagcggtc acatatcgta caacgttggc tgcaagaaac agggattgac
     7861 tgcccgctta ttgaaggcgg ctataaagcg ctgcgccaga cagcaattca ggcgacctgg
     7921 caactggcgc aaaaaccgat acttttaatt ggcggctgta cgggcagcgg caaaacgcaa
     7981 ctggtacgac aacagcccaa cggcgtggat ctggaaggtc tcgcgcgtca tcgcggctcc
     8041 tcttttggcc gcacgctgaa accccagctc agccaggcca gttttgaaaa caaacttgcc
     8101 gttgaattgc tgaaaattaa cgcgcgtcag acgctaaaaa ggtgggtact ggaagatgaa
     8161 gggcgaacga tcggcgccaa ccatctgcct gagtgtttac gcgaaagaat ggcgcaagcc
     8221 cccattgcgg tagtggaaga tccgtttgcg cttcgtctgg aacgactgcg tgaagagtat
     8281 ttcatccgta tgcatcacga cttcacccac gcctacggcg atggggccgg ttggcaggca
     8341 tatagtgaat atcttcatca tggactgttc gctattcgcc gccgtctggg gttgcaacgc
     8401 tttgccgaac tgacggacac gctggatagg gcgctggcag agcaattatc cagcggcagc
     8461 accgacggcc atatggcatg gctggttccg ctacttaacg aatattacga cccaatgtat
     8521 cgctatcaac tggagaaaaa agccgcgaat atcgtttttc gcggcacatg gcaagacgtt
     8581 gccaactggc taaaagcgca atagcttatt tttattgccg gctgacgcta cattgagccg
     8641 gcttagtgtc tgtcgcgctt gtcggcacgt tttgccagcc agtcgcccag catctgaacg
     8701 acctgaacca gcacaatcag cgccactacg gtaacaacca tcacttcggt ttcgtaacgg
     8761 tagtagccat agcgaatcgc caggtcgcct accccgccgc cgccgacaat cccggccatc
     8821 gccgagtagc cgattaagct taccagcgta atcgtcaggc cgcgcagcag ccctgcgctg
     8881 gcttccggca acagtacggt acagataata cgcatcggac tagcgccgaa tgccagcgcc
     8941 gcctcaataa tccctttatc gacttcacgg agcgcgctat ctaccaggcg tgcataaaac
     9001 gcgattgcgg ccaccgacag cgggacggag gctgcaatcg ggcctatcgt attgcccagc
     9061 aaaagctgcg ttagcggcag taacagcacc agtaaaataa caaatggcac cgagcggata
     9121 atattcacca gaaccgaggc gacaagataa ataaaacggt tctgccagaa cagatgacga
     9181 tcggtgacaa aaatcagaaa accgagcggt agaccgccaa gaatcgccag caccgttgaa
     9241 atactcaaca tctggaaagt ttcattgaac gccagcgtta aatccggcaa taaatcatcc
     9301 acggatcacc tccacctgtg cagtacgttg acggatatgc tccacggcgg ccgccaccgc
     9361 cgttggatta tgcggcgcgg ttaattgcac caccagaatg cccaacgcgc gttcgccgat
     9421 atactcaatc ttgccatgca ggatattgac cgcgacgcca aacttgatcg ccacctccga
     9481 cagtaccggc tgctccgccg aatcgccgat aaacaaaatt ttcagcaact gcccgggcag
     9541 gtgttcccgt aagcgttccg gcagggtcaa attaagggta tgagacacca gttgctgtgt
     9601 gaaagcgtgt tgcgggtggg caaacacatc aaacacctcg cccgattcca caaccttacc
     9661 gcccgacatc accgccacgc gatcgcaaat agatttgatc acgttcattt catgggtgat
     9721 cagcacaata gtaatcccga gctgcgcgtt gatctgtctg agcagggcca gaatcgtggc
     9781 ggaagtttcc agatccagag cggaagtcgg ttcgtcacac agcaaaacat ccggatggtt
     9841 agcgatggcg cgggctatcc ccacccgctg tttttgcccg ccgctgagct gtaccggaaa
     9901 acagttcgct ttatcggcaa ggcccaccag cgttaaaatt tccgccaccc gcggcgcgat
     9961 tttgctgcgt tcccagccag ccgctttcag gctaaacgcc acgtttttcg ccactgtccg
    10021 ggtatgcatt aagttaaaat gctggaaaat cataccaata cgctgccgcg cctggcgtaa
    10081 cgcttttccg tccagcgcag aaatttccac gccgttgacg ttgacgcgcc cctgactggg
    10141 acgcgttaag gcgttcaggg tacgcagcag agtgcttttt cctgcgccgc tggtaccgac
    10201 aatgccaaaa atctcgcccg cggcgatatg caggctcaca tcatccaccg cgcgcgtggg
    10261 ggtaccgcga ccggcggtaa aatcgacgca gactttttct atttcaatca tattcacctc
    10321 agaaattggg gatggccacc gctgcgatca gggtgtcgcg gtcatccatt ccggtttctg
    10381 gaaggcgcta taaatattct ttggatcgtc gatgaccgcg cgataagccg gcgatttcac
    10441 cgcctcgaca atatctttgg caaacggctt atcggcatct tcactgcgta ccgcaatgat
    10501 atttttcaga ttctcatcca ggtgttcctg cttaatcgcg ctggagagat cgagtcctgc
    10561 cgccaccgca aagttcccgt taaccagcgc gccggtcacg ccgtccagcg tgcgcggtag
    10621 ctgtgcggct tccagcggtt tgaaaaccag tccttttgga ttgctggcga tatctcgttc
    10681 agaggctttg gtcggatcga tattgtgctt aatcgtgata agccccaacg attgcaggaa
    10741 gcgaaggccg cgcgccaggt tggtcggatc gttggagagg gtaataatgt cccctttttt
    10801 aagcgcatcc aggctgttga ttttacgtga atagaagccc atcccggcgg tcggtaccac
    10861 aataagtttg ctgagcttca gccctttgtc agcggtgaat ttgtcaaaat agagggtatg
    10921 ttgaaagagg ttggcgtcga tgctgccgtt agctaacgcc atattgggct ggacatagtc
    10981 gctaaactcg cgcaccacga ccttataccc tttttctttt aatgtcggcg caatcgcctg
    11041 cttcaccatg tcgccatacg gccctggcgc gacgccaaat acgatcgttt gcggggaacc
    11101 atcggcatgg gcaaactgta atccgcaggc cagtaatagc gtgctggccg caatgcgtaa
    11161 actctgacgc aatcccataa tttctccatt ttaaatagtg tgatgctgtg ccggatgccg
    11221 ttcatgcggc atcgtctgtt ttggcccaaa cgaaaggcta tttcttaaca tgacacagat
    11281 cacagcctgc tgtccttgaa attatttcat gatgtttcct ggtgtgtcgt taaatgtacg
    11341 aggcaggcgc tcaggcgtgt gtcaggcggg aatggcgtaa agggaaatgc cggataagac
    11401 gtcttaacgc caacatccgg cacaggaaaa cgctttagaa atcgtaacgc agacgcacca
    11461 ggttcatatc gcccagattg tcagtgctgg aggtgaaaac atgttcataa tcaacgcgga
    11521 aaccataatc cagttggaag gtgatcccca cgccgttatc ggtgcgcaga tagtcgcggc
    11581 cattcacata ttcaatgcgg tcgcccataa agtacggttg aatagctttc acggcatact
    11641 gaccaatcgg gaaagcgtaa ccgacaaaat attccagacc ccacgcatcg ccggcaaagt
    11701 aatcattcac agacactttt ttggtcgtca taaagttctg ataccaaccg ccgcctgcgg
    11761 caatagtcca gttttccggc gtccagctta acgcggtacc gacaatattt tgatcgtaag
    11821 ttttattgcc gttgccgcgc atctccgcac gggtatagtt ccatgccgtc ccccaggtca
    11881 gatcgtcggt gagatggtaa tccgcgccta aagaaccgcc gcctttacgt ttgtaattca
    11941 ggccgttatt ggcattataa tcgtcgctga acagataaga cgcgtagaga tcgacattgc
    12001 caatgctttt cttatacttc aatgacttac gcgtacggta agaaccatcg tagtcgccgt
    12061 taatcccgtt gcccggcgcc tgacctatca tgtcgtaatc ccagatatcg gtttttacgc
    12121 ccaccacatc gtaataaatg ctgttctgtt gaccgaaggt cagcgttccc cacgtcgcgc
    12181 tcttgaagcc agtatacagc atacggcgag tggtatcagt cgtgcccttc gcataatggt
    12241 tatcccagtc aaataccgca gggatattga cgcccagctc gtaatagcta atccaactga
    12301 tatcatcaaa cagataataa tccgcggcga agcggaaacg cgtcccgcca tcaaaaccat
    12361 tacgtttata accgttcgcg ccgtcattac cggtcatatt ctggaactgc ggacgaatac
    12421 tcccgccaac ggtgaaattg agtcggctga gtggattacc cgcctgggga tcttgtttta
    12481 aaacggtgat ttccgcctga
//
LOCUS       DAJVSD010000124        12476 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.124, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000124 DAJVSD010000000
VERSION     DAJVSD010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 12476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12476
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.124"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(112..1314)
                     /gene="ubiI"
                     /locus_tag="OQP62_002747"
                     /gene_synonym="visC"
     CDS             complement(112..1314)
                     /gene="ubiI"
                     /locus_tag="OQP62_002747"
                     /gene_synonym="visC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent 2-octaprenylphenol hydroxylase"
                     /protein_id="HCS1722261.1"
                     /translation="MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLDHVVPQQLANDA
                     PPQLRVSAINAASEKLLTRLGVWSNIVARRASCYHGMEVWDKDSFGRITFDDASMGYS
                     HLGHIVENSVIHYALWQKAQQAADITLMAPAELQQVAWGENDAFLTLKDGAMLTARLV
                     IAADGANSWLRNKADIPLTFWDYRHHALVATIRTEEPHGAVARQVFHGEGILAFLPLS
                     DPHLCSIVWSLSPQDAERMQQSGDEAFNQALTIAFDNRLGLCRLESERQVFPLTGRYA
                     RQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELVDDLCRLQRQGKDIGQHLYLRR
                     YERSRKHSAAMMLAGMQGFRDLFAGENPAKKLLRDIGLKLADTLPGVKPQLLRQAMGL
                     NDLPQWLR"
     gene            complement(1443..2621)
                     /gene="ubiH"
                     /locus_tag="OQP62_002748"
                     /gene_synonym="visB"
     CDS             complement(1443..2621)
                     /gene="ubiH"
                     /locus_tag="OQP62_002748"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461973.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HCS1722262.1"
                     /translation="MSVIIVGGGMAGATLALAISQFSHGTLPVHLIEAKAPEADGHPG
                     FDARAIALAAGTCQQLARIGVWQAISDCATAINTVHVSDRGHAGFVTLDAQDYSLAAL
                     GHVAELHDIGLRLFALLRKAPGVTLHCPERVASVSRTQQQVNVTLENGNVIAGSVLVA
                     ANGTHSALASACGVDWHQEPYEQLAVIANVATAIPHQGRAFERFTPNGPLAMLPMSHG
                     RCSLVWCHPLDQRDEVLSWSDAQFCHALQAAFGWRLGRITQAGKRSAYPLALTTAAKV
                     FTHRTVVVGNAAQTLHPIAGQGFNLGLRDVMSLAETLVAAQDAGEDIGAWHVLSRYQQ
                     RRQVDRDTTIGVTNGLVHLFANRWAPLVIGRNIGLMAMELLPPARDALAQRTLGWVAR
                     "
     gene            complement(2618..3934)
                     /gene="pepP"
                     /locus_tag="OQP62_002749"
     CDS             complement(2618..3934)
                     /gene="pepP"
                     /locus_tag="OQP62_002749"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HCS1722263.1"
                     /translation="MTQQEYQRRRQALLAQMQPGSAALIFAAPEATRSADSEYPYRQS
                     SDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGV
                     DRALAFSEINQQLFQLLNGLDVVYHAQGEYAYADEIVLAALEKLRKGSRQNLTAPATM
                     TDWRPIVHEMRLFKSPEEIAVLRRAGEISALAHIRAMEKCRPGMFEYQLEGEIHHEFN
                     RHGARYPSYNTIVGSGENGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPV
                     NGKFTPAQREIYDIVLESLETSLRLFRPGTSIQQVTGEVVRIMITGLVKLGILQGEVD
                     QLIAENAHRPFFMHGLSHWLGLDVHDVGVYGPDRSRILEPGMVLTVEPGLYIAPDADV
                     PEAYRGIGVRIEDDIVITETGNENLTAGVVKKADDIEALMAAARQQ"
     gene            complement(3960..4538)
                     /locus_tag="OQP62_002750"
     CDS             complement(3960..4538)
                     /locus_tag="OQP62_002750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708672.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecA family protein"
                     /protein_id="HCS1722264.1"
                     /translation="MSIQNEMPGYDEMNRFLNQQGAGLTPAEMHGLISGMICGGNNDS
                     SWQPLLHDLTNEGLAFGHELAQALRKMHAATSDALEDDGFLFQLYLPEGDDVSVFDRA
                     DALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRNIAQLGYDESEDQEELEMSLEE
                     IIEYVRVAALLCHDTFTRQQPTAPEVRKPTLH"
     gene            4705..5034
                     /gene="zapA"
                     /locus_tag="OQP62_002751"
     CDS             4705..5034
                     /gene="zapA"
                     /locus_tag="OQP62_002751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HCS1722265.1"
                     /translation="MSAQPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKVR
                     TRVTNTEQLVFIAALNISYELTQEKAKTRDYAASMEQRIRMLQQTIEQALLDQGRITE
                     KTGQNFE"
     gene            5076..5259
                     /gene="ssrS"
                     /locus_tag="OQP62_002752"
     ncRNA           5076..5259
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="OQP62_002752"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            5280..5876
                     /locus_tag="OQP62_002753"
     CDS             5280..5876
                     /locus_tag="OQP62_002753"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HCS1722266.1"
                     /translation="MTQLPELSLSRQEIRRMIRQRRRALTPEQQRRFGQQAAARMLSF
                     PPVVMAHTVAVFLSFDGELDTQPLIEQLWQAGKRVYLPVLHPFSPGNLLFLHYHPQSA
                     LVTNRLNIREPRLDVRDVLPLAKLDVLVTPLVAFDEGGQRLGMGGGFYDRTLQNWQQH
                     KILPVGYAHDCQLVEKLPVEEWDIPLPAVVTPSKIWEW"
     gene            complement(6257..7489)
                     /gene="serA"
                     /locus_tag="OQP62_002754"
     CDS             complement(6257..7489)
                     /gene="serA"
                     /locus_tag="OQP62_002754"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HCS1722267.1"
                     /translation="MAKVSLEKDKIKFLLVEGVHQKALESLRAAGYTNIEYHKGALDA
                     EQLKASIRDAHFIGLRSRTHLTEEVINAAEKLVAIGCFCIGTNQVDLNAAAKRGIPVF
                     NAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYG
                     HIGTQLGILAESLGMHIYFYDIENKLPLGNATQVQHLSELLNMSDVVSLHVPENASTK
                     NMMGAKEIALMKPGSLLINAARGTVVDIPALCDALATKHLAGAAIDVFPTEPATNSDP
                     FTSPLCEFDNVILTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPL
                     HGGRRLMHIHENRPGVLTALNQIFAEQGVNIAAQYLQTSARMGYVVIDIEADGDVAEK
                     ALLAMKAIPGTIRARLLY"
     gene            complement(7755..8414)
                     /gene="rpiA"
                     /locus_tag="OQP62_002755"
     CDS             complement(7755..8414)
                     /gene="rpiA"
                     /locus_tag="OQP62_002755"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HCS1722268.1"
                     /translation="MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKG
                     QIEGAVSSSDASTEKLKGLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTR
                     EKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQNV
                     VTDNGNVILDVYGMEILDPIALENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIV
                     K"
     gene            8567..9460
                     /gene="argP"
                     /locus_tag="OQP62_002756"
     CDS             8567..9460
                     /gene="argP"
                     /locus_tag="OQP62_002756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator ArgP"
                     /protein_id="HCS1722269.1"
                     /translation="MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLEN
                     MFGQPLLVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSL
                     ATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLG
                     ALDYLFVASKPFAERYFPNGVTRSSLLKAPAVAFDHLDDMHQAFLQQNFDLPPGSVPC
                     HIVNSSEAFVQLARQGTACCMIPHLQIEKELESGELINLTPGLLQRRMLYWHRFAPES
                     RMMRKVTDALLEYGHKVLRQD"
     gene            complement(9726..10472)
                     /locus_tag="OQP62_002757"
     CDS             complement(9726..10472)
                     /locus_tag="OQP62_002757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative stress defense protein"
                     /protein_id="HCS1722270.1"
                     /translation="MKFKVMALAALVGLSAMSAQASELPEGPHIVTSGTASVDAVPDI
                     ATLAIEVNVAAKDAATAKKQADERVAQYLSFLEQNQIAKKDISAANLRTQPDYDYQNG
                     KSILKGYRAVRTVEVTLRQLDKLNSLLDGALKAGLNEIRSVSLGVAQPDAYKDKARKA
                     AIDDAIHQAQALAAGFNSKLGPVYSVRYHVSNYQPSPVVRMMKAADAAPVSAQETYEQ
                     PTIQFDDQVDVVFQLEPGTGQTSTTAASTQ"
     gene            complement(10566..11201)
                     /gene="argO"
                     /locus_tag="OQP62_002758"
     CDS             complement(10566..11201)
                     /gene="argO"
                     /locus_tag="OQP62_002758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine exporter ArgO"
                     /protein_id="HCS1722271.1"
                     /translation="MISYYFQGVALGAAMILPLGPQNAFVMNQGIRRQYHLMIALLCA
                     LSDLVLISAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGALKTAMSSNLELASAE
                     VMKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLAMEPKRWFALGTISASFLWF
                     FGLALLAAWLAPRLRTAKAQRIINILVGVVMWLIAFQLAREGVAHMHALFN"
     gene            complement(11402..12262)
                     /locus_tag="OQP62_002759"
     CDS             complement(11402..12262)
                     /locus_tag="OQP62_002759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small-conductance mechanosensitive channel MscS"
                     /protein_id="HCS1722272.1"
                     /translation="MEDLNVVDSINGAGTWLVRNQALLLSYAVNIVAAIAIIIIGLIV
                     ARVISNTVNRLMRARHIDATVADFLSALVRYGVIAFTLIAALGRVGVQTASVIAVLGA
                     AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLNVQIFSTTMRAVDG
                     KIIVIPNGKIIAGNIINYSREPVRRNEFIIGVAYDSDIDQVKQLLTTIIESDDRILKD
                     REMTVRLNELGASSINFVVRVWSKSSDLQNVYWDVLERIKREFDAAGISFPYPQMDVN
                     FKRVKDNAAE"
BASE COUNT         2934 a         3609 c         3178 g         2755 t
ORIGIN      
        1 gaaataagcg gtgaaattag attatttcaa acgaggaaag ccccccggcg cgatagccgg
       61 gaaagcaaag tgtgacgggt ttcaaactct tgctggcgtg cagtcagacg cttaacgaag
      121 ccattgcgga aggtcgttta gccccattgc ctggcgaagc agttggggtt tgacgccggg
      181 gagcgtgtcc gccagtttca gtccgatgtc gcgcagcaat ttttttgccg ggttttcgcc
      241 ggcaaacagg tcacgaaaac cttgcatccc ggcaagcatc atcgccgcgc tatgtttacg
      301 gctacgctca taacgacgga gataaagatg ttggccaatg tctttgccct ggcgctgaag
      361 ccggcacaga tcgtccacca gttcggccgc gtccataaaa ccgaggttga cgccttgccc
      421 tgccagcgga tggatggtgt gcgcggcatc gccgaccaac gccagacgat gcgcggcaaa
      481 ctggcgagca tagcggcccg tcagcggaaa aacctgccgt tcgctttcca ggcggcataa
      541 gcccagccga ttatcgaagg cgatagtcaa cgcctggtta aacgcctcgt cgccgctctg
      601 ttgcatacgc tccgcatcct gcggagaaag cgaccagaca atggaacaca gatgcggatc
      661 gcttaacggc aaaaacgcca gaataccttc accatgaaac acctggcgag caaccgcgcc
      721 gtgcggctct tcggtgcgga tagtcgctac cagcgcatgg tgacggtagt cccagaaagt
      781 taagggaata tccgctttgt tacgcagcca ggagttggcg ccatccgcgg caatcaccag
      841 acgcgcggtt aacatcgcgc cgtcttttaa agtcaggaag gcgtcattct ctccccaggc
      901 aacctgctgt aactccgctg gcgccattaa ggtgatatcc gccgcttgct gcgctttttg
      961 ccacagtgca tagtgaatga cgctgttttc aacaatatgc cccagatggc tatatcccat
     1021 gcttgcgtca tcaaacgtaa tacggccaaa gctgtcttta tcccagactt ccataccgtg
     1081 gtagcaactt gcccgtcgcg ccacaatgtt tgaccatacg ccaagacggg taagcagttt
     1141 ttcgctggcg gcattaatcg ccgacacccg aagctgaggc ggcgcatcgt tcgccaactg
     1201 ctggggaaca acgtgatcca gtaccgcaac gcgcaaaccg ctcccctgca agccgcaggc
     1261 gacagccagt cccaccatgc ctccgccaac tattgctaca tcaacacttt gcactattta
     1321 ctcctggaaa ccggaacaat caaaaccgta ggccggataa ggcgtttacg ccgccatccg
     1381 gcatttttac gaacacgatg ccggatggcg gcgtaaacgc cttatccggc ctacagatct
     1441 gcttaacgcg caacccaacc taaggttcgc tgtgccagcg catcgcgcgc aggtggtaat
     1501 aattccatcg ccattaaacc gatattgcgc ccaataacca gcggcgccca acgatttgca
     1561 aacagatgga ccagaccgtt cgttacgcca atcgtcgtat cccggtcaac ctgacgacgc
     1621 tgctgatagc gcgataacac gtgccaggcg ccaatatcct cgcccgcgtc ctgtgccgcg
     1681 accagcgttt ccgccaggct catgacatcg cgcagaccga gattaaaccc ttgtccggcg
     1741 ataggatgca acgtctgcgc cgcattgccg accacgacag tccggtgagt aaacactttc
     1801 gccgccgtag tcagggcaag cggatacgcg ctgcgcttac ccgcctgagt aattcgcccc
     1861 agccgccagc cgaacgcggc ctgcaacgca tgacagaact gcgcgtcgga ccagctcagc
     1921 acctcatcgc gctggtcgag cgggtgacac caaaccagcg aacatcggcc atgcgacatc
     1981 ggcaacatcg ccagcgggcc attgggggta aaacgttcaa aggcgcgtcc ctggtgcggg
     2041 atagcggtcg cgacattcgc tatcaccgct aactgttcgt aaggctcctg atgccagtca
     2101 acgccgcagg ctgatgccag cgcggagtgg gtaccgttag ccgccaccag cacgctgcca
     2161 gctatcacat tgccgttttc cagagtgacg ttaacctgct gttgggtacg cgacacgctg
     2221 gctacgcgct ccgggcagtg cagcgtaacg cctggcgctt tacgcaagag cgcaaacaga
     2281 cgcagcccga tatcatgcag ctccgcaacg tgacccaacg ctgccaggct gtaatcctgc
     2341 gcgtctagag tcacaaatcc ggcatgaccg cgatcgctga cgtgtacggt gttgattgcc
     2401 gttgcgcaat cggaaatcgc ctgccagacg ccaattcgcg ccagttgctg gcaagtgccc
     2461 gccgccagcg caatcgctct ggcgtcaaag ccgggatgac cgtcggcttc aggcgctttc
     2521 gcttcaatca ggtgtaccgg caacgtccca tgactgaact gagagatggc cagcgccagc
     2581 gttgcgcctg ccatgccgcc gccaacgata atgacgctca ttgctgccgc gccgccgcca
     2641 ttaatgcctc aatgtcatcc gccttcttca caacgccagc ggtcaggttt tcattaccgg
     2701 tttcggtaat gacaatgtca tcttcaattc gaacgccaat gccgcgatac gcttccggca
     2761 cgtcggcatc cggcgcgata tagaggcctg gctctacggt cagcaccatg cccggctcca
     2821 ggatgcggga gcgatccggc ccataaacgc cgacatcatg aacatccagc cccagccagt
     2881 ggctcaagcc atgcataaag aaaggacgat gcgcattctc ggcaatcagt tgatcaacct
     2941 ctccttgcaa aatccccaac ttcaccagcc cggttatcat gatgcgcact acttcgccgg
     3001 tcacctgctg aatagaggta ccaggacgga acagtcgcag gctggtctcc agcgattcca
     3061 gaacgatgtc ataaatttca cgctgagctg gcgtaaattt cccgttcacc gggaaagtac
     3121 gcgtgatgtc gcccgcgtaa cctttatatt cacagcccgc gtcgataagc actaaatcgc
     3181 cgtcgcgcat ttcactttcg ttttcagtgt aatgcaggat acagccattt tcgccgctgc
     3241 cgacaatggt gttataggag ggatagcgcg cgccatggcg attaaattcg tggtgaattt
     3301 caccctccag ctgatactca aacatccccg gacggcattt ttccatcgcg cggatatgcg
     3361 ccagagcgct aatttccccg gcgcggcgca ggacagcaat ctcttccggc gatttgaaca
     3421 ggcgcatctc atggacgatc ggtcgccagt cagtcatggt ggccggcgcg gtcagattct
     3481 ggcgggagcc tttacgcagc ttctccagcg cagccagaac aatctcgtcg gcatacgcat
     3541 attcgccctg cgcgtggtac accacatcca gaccattaag caactgaaag agttgctggt
     3601 tgatttcgct aaacgccagc gcccggtcaa cgcccagttt ttccggcgcg gcatcctgtc
     3661 ctaaacggcg accaaaccag atttccgccg tcaggtcgcg aacgcggttg aacaaaacgc
     3721 tgtggttgtg ggtgtcatca ctcttaatca gtaccagcac ggcttccggt tcgttaaaac
     3781 cggtgaaata ccagaagtcg ctactctggc gatacggata ttcactgtct gcgctgcgcg
     3841 tcgcctccgg cgcggcaaag atcagcgcgg cgctgccggg ctgcatttgc gccagtaatg
     3901 cctggcgacg gcgttggtat tcctgctgag tcatgacatg gcctccattt cgttttttct
     3961 tagtgtagcg tcggtttacg cacttccggc gcggtcggct gttggcgcgt gaaagtgtca
     4021 tgacataaca gcgccgcaac acggacatat tcgatgatct cttcgagcga catctccagc
     4081 tcttcctgat cttcgctctc atcataacca agctgcgcaa tattacgcag gtcgtcaatc
     4141 gcttcacccg tttcgccggt gactttatca agtttaggct gcgttacgcc gaggccaagc
     4201 aaaaagtggt taacccaccc ggctaatgca tctgcgcgat cgaatacgct gacatcgtcg
     4261 ccttcaggca gataaagctg aaaaagaaag ccgtcgtctt ccagcgcgtc gctggtcgcc
     4321 gcgtgcattt tgcgcagcgc ctgagcaagc tcatgcccga aggccagacc ttcgttcgtc
     4381 aggtcatgca acagcggctg ccatgagctg tcgttgttgc cgccgcaaat catcccgctg
     4441 attaaaccat gcatttcagc cggggtcaga ccggcccctt gttgattcaa aaaccggttc
     4501 atttcgtcgt aaccaggcat ttcgttctgt atagacataa gcattcgtca tcaaagggag
     4561 gatattcatg atatgctacc actttggacc ctggtgaacc agaaaagggc ttgtatcttc
     4621 acaccagggt agctatagtg tcgccccttc gcggaccctg ggtctggaga cgaaggcagc
     4681 gcagtcaatc agcaggaagg tggcatgtct gcacaacccg tcgatatcca aatatttggc
     4741 cgttcactgc gagtgaattg cccgcctgac caaagggatg cgttgaatca ggctgcggac
     4801 gatctgaatc agcggttgca agatctgaaa gttcgtacta gagtcacaaa tactgagcag
     4861 ttggttttca ttgccgcatt gaatatcagc tatgagttaa ctcaggaaaa agcgaagacc
     4921 cgcgattacg cggcgagcat ggaacaacgt attcggatgc tacaacagac catcgaacag
     4981 gcgttgcttg atcaaggtcg cataaccgaa aaaacgggcc aaaactttga ataacacttt
     5041 tcgctttact atggtaaagt gattgtgaaa acagtatttc tctgagatgt ttgcaagcgg
     5101 gccagtcccc tgagccgata tttcatacca caagaatgtg gcgctccgcg gttggtgagc
     5161 atgctcggtt cgtccgagaa gccttaaaac tgtgacgaca cattcacctt gaaccaaggg
     5221 ttcaagggtt acagcctgcg gcggcatctc ggagattccc cttctgactg gcgacagcca
     5281 tgacgcaact tcccgaactc tctttatcac gacaagaaat ccgccgaatg attcggcaac
     5341 gtcgccgtgc gctgacgcca gagcagcaac gccgctttgg tcaacaggcc gccgcccgaa
     5401 tgctcagctt tcctcccgtc gtgatggcgc acactgtcgc cgtgtttctc tcctttgatg
     5461 gcgaactcga cacccagccg ctgatagaac agctatggca agcgggcaag cgcgtctacc
     5521 ttccggttct tcatcccttc agccctggca acctcctgtt tctgcactat catccgcaga
     5581 gtgcgctggt gaccaaccgc ttaaatatcc gggagccacg gcttgatgtc cgcgacgtat
     5641 tgccgctggc aaagctggat gtgctggtaa cgccgttagt cgcgtttgac gaaggcgggc
     5701 agcgtttagg catgggcggc ggtttttatg accgcacgct acaaaactgg cagcagcata
     5761 agatcctacc tgtgggctac gcgcatgatt gccagttagt agaaaaactg ccggttgaag
     5821 agtgggatat cccgctgcct gcggtggtga cgccgtccaa aatttgggag tggtagccgt
     5881 gttttgtcga ttgacagcgt cgcttttttg acctaaattt ctcggtgaag ggtgagggag
     5941 gcgaacctcc ctcctgcgta ctcactgtta atatgctggg caagcgatga ttaacaggat
     6001 cagcagcatg atgacgtatc tcatcatcgt ccctttcctt tttagagccc ctgcctcggt
     6061 aggggctttc ccgtttcagc gctatgctga gcccttatcg taaattcctt ttattgctgt
     6121 acaacacgca acgctgcctt taattaccaa ttgcggcaag gctcgaaaac agaatgtatg
     6181 cgttacacga agagatgttg aggcagggaa accagagaaa ggatgggcag gtcatctcct
     6241 gcccatttag aggaaattag tacagcagac gggcgcgaat ggtgcccgga atcgccttca
     6301 tcgccagcag cgctttctcc gccacatcgc catcggcttc tatatcaatt accacatacc
     6361 ccattcgggc ggaggtttgc agatactgtg cggcaatgtt aacgccctgc tcggcaaaga
     6421 tctggttaag cgcggtcaat acgcccgggc ggttttcgtg gatgtgcatc aggcgacgac
     6481 cgccgtgcag cggcagcgac acttccggga agttcacggc ggacagcgtc gagccgttat
     6541 ccgagtactt aatcagtttt cctgcgactt ccagaccgat gttttcttgc gcctcctgcg
     6601 tcgagccgcc gatatgcggc gtcaggatca cgttatcgaa ttcgcacagc ggagaggtaa
     6661 acggatcgct attagtggcc ggttccgtcg ggaagacgtc gatagccgcc cccgccagat
     6721 gtttcgtcgc cagcgcgtcg cacaaagccg ggatatccac taccgtaccg cgcgcggcgt
     6781 taatcagcag cgaacccggc ttcatcaggg ctatctcttt tgcgcccatc atgtttttgg
     6841 tggaggcgtt ttcaggtacg tgcagactga ccacatcgct catattcagc aattcagaca
     6901 ggtgctgcac ctgagttgca ttaccgagcg gcagtttatt ttcaatatca tagaaataga
     6961 tatgcatccc cagcgattcc gccagaatgc ccaactgcgt tccgatatgg ccgtaaccga
     7021 taatgccaag ctttttaccg cgtgcttcga acgatcccgc cgccagttta ttccatacgc
     7081 cgcggtgcgc tttggcgttc gcttccggca cgccgcgcag cagcagcaat agctcgccaa
     7141 tcaccagctc cgccacggaa cgggtattcg agaatggcgc gttaaagacc ggaataccgc
     7201 gttttgccgc cgcatttaaa tccacctggt tggtgccgat gcaaaaacag ccaatcgcca
     7261 ccagcttctc tgcggcgtta atcacttctt ctgtcagatg agtacgggat cgcagaccga
     7321 tgaagtgggc atcgcggatg gacgctttca actgttcagc gtccagcgcg cccttgtgat
     7381 attcaatgtt ggtgtaacct gccgcacgaa ggctttccag cgccttttga tgcacccctt
     7441 caaccagcag aaatttaatt ttatctttct ccagcgatac ctttgccatt tccccgatcc
     7501 tgtctttttt tgccatctga tgttgtgtgt ggatttgcat ccgtccttca acatatcaaa
     7561 aaaaattatc acggcaatat gaacgtttgc gccaacgccg tgaaggaatc gcatacagcg
     7621 ggaaatagca gatgaaaata ccgggaataa cttttctttg gagggatcgg cagggcaaac
     7681 gattaaacgt gatacatgtc accaaatttg ccctgaccga attctttacg cggcaggaaa
     7741 tacgcctggc gggatcattt tacgatggtt ttcaccccgt ccggcgtgcc gatcagtgcg
     7801 acatcggcgc cacggttggc gaacaaccct acggtcacga cgcccggaat cgcgttaatg
     7861 gcgttttcca gcgcgatggg atcaaggatt tccataccat aaacatccag aatcacgttg
     7921 ccgttatccg tgaccacgtt ctgacggtac tccggacgcc cgcccagctt caccagttga
     7981 cgagcaaccg cgctgcgcgc catcggaatc acttcgaccg gcaacgggaa tttgccaaga
     8041 atatccacct gtttagaggc atccgcaata cagataaatt tctccgccac ggaagcaata
     8101 attttctcac gggttaatgc cgcgccgccg cctttgatca tctgcatatg accgttgatt
     8161 tcgtccgcgc catcgacata gatacccagg ctatccactt cgttgagatc aaacacatga
     8221 ataccgaggc ctttgagttt ttcagtcgag gcgtccgagc tggagaccgc gccttcaatc
     8281 tggcctttca ttgtgcccag cgcatcaata aagtgtgcgg ccgttgagcc tgtaccaacg
     8341 cccacaatgg tgccgggctg tacatactga agtgccgccc atcctaccgc ttttttcagt
     8401 tcatcctgcg tcatagatcg tttcgcctgt ggtgtgaaaa tacagccgca ttatagaaca
     8461 ttgtcgggaa aaatctccgt gtccgtacac aggctacgga tttcatctgt accgacggca
     8521 aatttatgtc atagtgcgga aaaaataaca ggagcatgac acaacaatga aacgtccgga
     8581 ctacagaaca ctacaggcgc tggatgccgt tatacgtgaa cgaggattcg agcgcgccgc
     8641 ccagaagctg tgcatcacgc aatccgccgt ctcacagcgc ataaaacagc ttgagaatat
     8701 gttcggacaa cctttgttgg tgcgtaccgt tcctcctcgc cccacggagc aagggcaaaa
     8761 attactggct ctgctgcgtc aggttgaact gctggaagaa gagtggctgg gcgatgaaca
     8821 aaccggctct acgccgctac tgctgtcgct ggcggttaac gccgacagtc tggcgacctg
     8881 gctgcttccg gcgctggcgc cagtactggc ggactcccct atccgtctca atttacaggt
     8941 ggaagatgaa acgcgcacgc aagaacgtct gcgtcgcggc gaggtggtgg gcgcggtgag
     9001 tattcagcat caggcgctgc ccagttgcct ggtagacaaa ctgggcgcgc tcgactatct
     9061 gtttgtcgcg tcaaagccgt ttgccgagcg ctattttccc aatggcgtta cccggtcgtc
     9121 gctgctgaaa gcgcccgccg tcgcgttcga ccatctggat gatatgcatc aggctttttt
     9181 gcaacagaat ttcgatctac cgcccggcag cgtgccgtgc catatcgtta attcatccga
     9241 agcgtttgta cagcttgcgc gtcagggcac ggcctgctgc atgatccctc acctgcagat
     9301 tgagaaagag ctggaaagcg gcgagttgat caacttaacg cctggcttgc tacaacgccg
     9361 gatgctttac tggcaccgct ttgccccgga aagccggatg atgcgcaaag tgaccgacgc
     9421 gctgctggag tacgggcaca aggtgctgcg tcaggattag cctctctatg aatgccggat
     9481 ggcggcgtga acgtcttatc cggcctgcat gacccattat tcccccgtcg cttctttgaa
     9541 attgatcaca aaatcattgc gttcaggcgg caaaaaacga cgcgccattg gctatttttt
     9601 gctggcggca aggcgactca aaacgctcac cgtattatca aatcttcatt tcattgcgta
     9661 atacggagca aaaaatgaga acaccgggag aaaacgcggc ctggaagcgc ccaggccggg
     9721 cgagattact gcgtgctggc ggccgttgtc gacgtctgcc ctgttccagg ttcaagctgg
     9781 aataccacat cgacctgatc gtcgaactga atagtcggct gctcgtaagt ttcctgcgcg
     9841 gataccggcg cagcatctgc ggctttcatc attcgcacca ccggactcgg ctgataatta
     9901 gagacatggt aacgaacgct gtaaaccggc cccaatttgc tgttaaaacc ggctgccagc
     9961 gcttgcgcct gatgaatcgc gtcatcaatg gcggctttgc gggccttgtc tttataggcg
    10021 tccggttgcg ccacgcccag cgataccgaa cgaatctcgt tcagacccgc cttcagcgcg
    10081 ccgtccagca gcgaattgag tttatctaac tgacgcagcg tcacctcaac ggttcgcacc
    10141 gcgcgatacc ctttcagaat gcttttaccg ttttggtaat cataatccgg ctgcgtgcgc
    10201 agattcgccg cgctaatgtc ttttttcgca atctgatttt gctcaaggaa ggaaagatat
    10261 tgcgccacgc gctcatcggc ctgcttcttc gccgtcgccg catccttcgc cgcgacgttc
    10321 acttcaatcg ctaaggtggc gatatcaggc acagcatcga cgcttgctgt accggaagtc
    10381 acgatgtgcg ggccttccgg caattcgctt gcctgcgccg acattgcact taaacccact
    10441 aatgccgcca gggccatcac tttgaacttc acagtctctc ctccatattg cagtcattgc
    10501 cctgatatac agggcgcatg caggcaagct tagcggatat cggtctgttg tccatcagac
    10561 aacgcttagt tgaaaagcgc gtgcatatgc gcgacgcctt cccgcgccag ttggaaggcg
    10621 ataagccaca tcaccacccc taccagaatg ttgataatgc gttgagcttt cgccgtacgc
    10681 agtcgaggcg caagccaggc cgccagtagc gctaacccaa aaaaccataa gaacgacgcg
    10741 ctaatcgtgc cgagagcaaa ccagcgcttt ggctccatag ccagttgtcc gccgagactg
    10801 cccaacacga caaacgtatc cagataaacg tgcggattca gccaggttac cgccagcatc
    10861 gtagcaataa ttttccagcg cccctgcttc ataacctcgg cgctggccag ctccagatta
    10921 ctgctcattg ccgttttcag cgcgccaaaa ccgtaccata acaagaacgc aaccccgccc
    10981 catgtgacca gcgccagcag ccacggcgac tgcatcagca acgcgctacc gccaaaaata
    11041 ccggcgctaa tcaggactaa atcacttaac gcgcaaagca gcgctatcat gaggtggtac
    11101 tggcgacgaa ttccctgatt catcacaaac gcattttgcg ggccaagcgg aaggatcatg
    11161 gcggcgccaa gggcaacccc ttgaaaataa taagatatca cgttaactac cctgagctgt
    11221 ttttcttaaa ggcagactat agcgcgggaa tattattagc ggaaattgat aattttaatc
    11281 actaataaga aaagctaata aagagactga ataacggatg gcggctacgc ttatccgctc
    11341 aataaccaga gaatactgga ggcggataag cgcagcgccg gcaggcagca cgggaggaaa
    11401 attactccgc ggcgttatct ttcacgcgtt taaaattgac gtccatctgc gggtacggga
    11461 agctaatacc agcggcgtcg aattcacgtt taatacgttc cagcacgtcc caatagacat
    11521 tttgcaggtc gctgctttta ctccagacac gcaccacaaa attaattgat gaggcgccca
    11581 gctcattcaa acgcaccgtc atttcgcgat cttttaaaat acgatcgtcg gactcgataa
    11641 tcgtcgttag cagctgtttc acctgatcga tatccgaatc gtaggccacc ccaataatga
    11701 attcgttacg gcgaaccggc tcacgagaat agttgatgat atttcccgcg ataattttgc
    11761 cattcggaat cacaataatt ttgccgtcta ccgcgcgcat tgtcgtggaa aagatttgca
    11821 cgttcagtac cgtaccggca acgccgccca aatcgacata ctcaccggcg cggaacggac
    11881 ggaacataac cagcaatacc ccagccgcaa ggttagaaag cgatccctgt aatgccaggc
    11941 caacggctaa accagcggcg cccagtacgg caataaccga ggcggtttga acccccacgc
    12001 gacccagagc cgcaatcagc gtaaaagcga taaccccata gcgcaccagc gcagaaagaa
    12061 agtcggctac tgtcgcatca atatgacgcg cacgcatcag acgatttacc gtattggaga
    12121 tcacgcgcgc tacaatcaag ccgatgatga taatagcgat agccgcaaca atattcacag
    12181 catagctgag caataacgcc tggttgcgta ccagccaggt gcccgcacca tttatgctgt
    12241 cgacaacatt caaatcttcc attcaatatt ccttggtcat agcaaaacaa gcaaatgaga
    12301 tcattctcac gaaaagaact ttttaaaggt aaacaaaaac agaggaatat gccatttttc
    12361 ggcatcatcc caaaaaaggc aggtacactg tgagttggcc ggatgaaagc gctaactaac
    12421 gccgctctcc ggaaataacg ataataaata tcctccggca tagccggagg tttttc
//
LOCUS       DAJVSD010000125        12370 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.125, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000125 DAJVSD010000000
VERSION     DAJVSD010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 12370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12370
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.125"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(169..423)
                     /locus_tag="OQP62_002760"
     CDS             complement(169..423)
                     /locus_tag="OQP62_002760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001675765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HCS1722273.1"
                     /translation="MDCRSGCGACCIAPSISSPIPGMPNGKPMNTRCVQLSEDNLCLI
                     FGSPLRPKVCSGLQPTGDMCLTTREEAIIYLLELEQKTLP"
     gene            748..1320
                     /gene="yeiP"
                     /locus_tag="OQP62_002761"
     CDS             748..1320
                     /gene="yeiP"
                     /locus_tag="OQP62_002761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007750416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P-like protein YeiP"
                     /protein_id="HCS1722274.1"
                     /translation="MPRANEIKKGMVLNYNGKLLIVKDIDIQSPTARGAATLYKMRFS
                     DVRTGLKVEERFKGDDIVDTVTLSRRGVDFSYVDGNEYVFMDKEDYTPYTFTKDQIEE
                     ELLFMPEGGMPDMQVLTWDGQLLALELPQTVDLEIVETAPGIKGASASARNKPATLST
                     GLVIQVPEYLSAGEKIRIHIEERRYMGRAD"
     gene            1533..2519
                     /locus_tag="OQP62_002762"
     CDS             1533..2519
                     /locus_tag="OQP62_002762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HCS1722275.1"
                     /translation="MTKTNLITGFLGSGKTTSILHLLAHKDPAEKWAVLVNEFGEVGI
                     DGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQIL
                     DLLTAPVYEPWIDLRATLCILDPRLLLDQQSVANENFRDQLASADIIIANKTDRATAQ
                     SDAALQQWWRQYGGDRQLIHAEHGQIDGKLLDLPRQNLAELPASAAHSHTHASKKGLA
                     ALNLPAQQRWRRSLNSGQGHQACGWIFDADTVFDTIGLLEWARLAPVGRVKGVMRIQE
                     GLVRINRQGDDLHIETQSVAPPDSRVELISNTETDWNTLQTALLKLRLATHA"
     gene            2549..3268
                     /locus_tag="OQP62_002763"
     CDS             2549..3268
                     /locus_tag="OQP62_002763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HCS1722276.1"
                     /translation="MTMKTRYSLIILLNAAGLALFLSWYLPVNHGFWFTIDSGIFHFF
                     NQKLVESHAFLWWVAITNNRAFDGCSLLAMGGLMLSFWLKEDASGRRRIVIIGLVMLL
                     TAVVLNQLGQALIPVKRASPTLSFEHIYRVSELLHIPTKDASKDSFPGDHGMMLLIFS
                     AFMLRYFGKTAGIIALIIFVVFAFPRVMIGAHWFTDIVVGSLTVILIGLPWWLMTPLS
                     DRAIALFEDYLPGGNKQILNK"
     gene            3682..4254
                     /gene="mepS"
                     /locus_tag="OQP62_002764"
     CDS             3682..4254
                     /gene="mepS"
                     /locus_tag="OQP62_002764"
                     /EC_number="3.4.17.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional murein DD-endopeptidase/murein
                     LD-carboxypeptidase"
                     /protein_id="HCS1722277.1"
                     /translation="MVKSQPILRYILRGIPAIAVAVLLSACSTTTNTAKNMHSETHAV
                     GNSDSSSLQASQDEFENMVRNLDVKSRIMDQYADWKGVRYRLGGSTKKGVDCSSFVQR
                     TFREQFGLELPRSTYEQQEMGKAVSRNNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHA
                     STSSGVIISSMNEPYWKKRYNEARRVLSRS"
     gene            4580..6136
                     /locus_tag="OQP62_002765"
     CDS             4580..6136
                     /locus_tag="OQP62_002765"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-GMP phosphodiesterase"
                     /protein_id="HCS1722278.1"
                     /translation="MLTRDSSSGRKILLTCIITGIAAALLIGSLQFFLSWHKRDVKYN
                     TLLSDVQHYLASYFADLKATTDILQPLTINTCQQVGAELTSRAAFSLNVRAFLLIKDK
                     KVFCSSATGAMNMPLQQLVPDIDIRKDVAMAILPGTPMMPNKPTMVIWYRNPLLNNSG
                     VFTSLNINLTPYLLYTTRQDDFNGIALIVGNTALSTFSSRLLTVAELPGTPSRQATIN
                     GLPLKIQLYADSWTYNDLWYALMLGCISGIVAGFICYFIYALRTRPGKEILTAIKHEQ
                     FYVVYQPVVDTRTLSVTGLEVLLRWRHPTAGEIPPDAFIHYAEAQQLIVPLTQHLFEL
                     IARDAPTLQKVMPVGAKFGINIAPEHLHSDSFKEDMHRLRDALPAHHFHIVLEITERN
                     MLQQYEAAKLFEWLHSAGFEIAIDDFGTGHSALIYLERFTLDYLKIDRGFIQAIGTET
                     VTSPVLDTVLTLSRRLNMLTVAEGVETPEQARWLRDHGVNYLQGYWISRPLPLKDFVL
                     WMSAPSVPEW"
     gene            6243..8048
                     /locus_tag="OQP62_002766"
     CDS             6243..8048
                     /locus_tag="OQP62_002766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS1722279.1"
                     /translation="MIARVMLLLVALVSAGAQAQEIKESYAFAVLGEPKYAFNFDHFD
                     YVNPAAPKGGQMTLSAIGTFDNFNRYSLRGNPGVRTEALYDTLFTTSDDEPGSYYPLI
                     ADHARYAADYSWVEISINPRARFHDGTPITARDVAFTFHKFMTEGVPQFRLVYKGTTV
                     KAIAPLTVRIELAKPGKEDMLSLFSLPIMPEKFWKNHKLSDPLSTPPLASGPYRITQW
                     KMGQYIVYSRVKNYWAANLPVNRGRFNLDTVRYDYYLDDNVAFEAFKAGAFDLRLEND
                     AKNWATRYIGKNFDNHYIIKEEQKNESAQDTRWLAFNIQRPVFKDRRVREAVTLAFDF
                     EWMNKALFYNAWSRTNSYFQNTEYAARNYPDADELVLLAPMKKDLPPEVFTQIYQPPV
                     SNGDGYDRENLLKADALLTQAGWVINGQQRVNSVTGKPLTFELLLPASSNSQWVLPFQ
                     HNLQRLGITMTIRQVDNSQLTNRMRSRDYDMMPRLWRAMPWPSSDLQISWASEYIDSS
                     YNAPGVQSPVVDKLIAQIIAAQGDKAKLVPLGRALDRVLTWNYYMLPMWYMAQDRLAW
                     WDKFSHPAIRPVYTIGLDTWWYDVNKAAKLPAARR"
     gene            8058..9152
                     /locus_tag="OQP62_002767"
     CDS             8058..9152
                     /locus_tag="OQP62_002767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin C ABC transporter permease YejB"
                     /protein_id="HCS1722280.1"
                     /translation="MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEF
                     GQGGALPGASGEGVRASHAQTGVGNISDSHYRGGRGLDPEVIAEITHRYGFDKPLHER
                     YFKMLRDYLSFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV
                     HNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYYDIFPLRGLVSANFDTLPWY
                     QKITDYLWHITLPVLATVIGGFAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWK
                     HVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTL
                     YIFTLIGLLLNILSDISYTLVDPRIDFEGR"
     gene            9152..10177
                     /locus_tag="OQP62_002768"
     CDS             9152..10177
                     /locus_tag="OQP62_002768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1722281.1"
                     /translation="MPRLSPVNQARWARFRHNRRGYWSLWIFLVVFSLSLCAELIAND
                     KPLLVRYEGQWYFPLVKNYSERDFGGPLATTADYQDPWLQRQLENRGWVLWAPVRFGA
                     NTINFATTQPFPSPPSAKNWLGTDANGGDVFARILYGTRISILFGLMLTICSSVMGVL
                     AGALQGYYGGKVDLWGQRLIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSL
                     VGVVRAEFLRTRNFDYIRAAQALGVSDRDIILRHMLPNAMVATLTFLPFILCSSITTL
                     TSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGIAAFLSVAILLSLLIFIGEAVRDA
                     FDPAKAV"
     gene            10179..11768
                     /gene="yejF"
                     /locus_tag="OQP62_002769"
     CDS             10179..11768
                     /gene="yejF"
                     /locus_tag="OQP62_002769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin C ABC transporter ATP-binding protein
                     YejF"
                     /protein_id="HCS1722282.1"
                     /translation="MTSPLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGES
                     GSGKSVTALSILRLLPTPPAVYLSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM
                     VSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRQASQRLRDYPHQLSGG
                     ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLS
                     IVKKLADSVAVMQHGKCVENQRADTLLSAPTHPYTQKLLNSEPTGDPVPLPAGQAPLL
                     EVDKLRVAFPIRKGILKRVVDHNVVVNNISFTLHPGETLGLVGESGSGKSTTGLALLR
                     LIRSEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH
                     QPTLSGAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILD
                     EPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG
                     QCERVFTAPQQAYTRQLLALS"
     gene            complement(11772..12116)
                     /locus_tag="OQP62_002770"
     CDS             complement(11772..12116)
                     /locus_tag="OQP62_002770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722283.1"
                     /translation="MNTLQLSIVHRLPQNYRWSAGFAGSKVEPIPQNGQSTENSLVAL
                     KLLSPAGDSAWSVMHKLSQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGV
                     AIAEPFSNNNPF"
BASE COUNT         2897 a         3308 c         3078 g         3087 t
ORIGIN      
        1 ctaccgtttc agaagacacg aaataaggga agcatgtatt acgctattta atggtaaaag
       61 gaggtaattt gatgcgcagc ttttgcagac tatttcggga tataacgtaa gcccctgcac
      121 gtttatcaaa aacagctgac ttagagccta tcccattagg ctattagctc atggtaaggt
      181 tttctgttcg agttccagca aataaataat ggcctcttcc cgggtcgtta aacacatgtc
      241 ccctgtcggt tgcaaaccag agcacacttt tgggcgtaaa ggcgagccaa agataagaca
      301 caagttatct tccgaaagct gcacgcatct ggtattcatc ggcttgccat tcggcattcc
      361 gggtatcggc gacgaaattg aaggcgcaat acagcaagcg ccacaaccgc tacgacagtc
      421 catgctcagc ccctctattt ataaccaaat gaaagataac agaatttgtc caaagaaaaa
      481 tccagattta aaatgtggac gtcatcatga tcaggcctgt cctcagacat tccgaagaca
      541 aggctggaaa cagaagggac aacacagcac acttcccccc tccaggcgac atgccatcgc
      601 gtattctcgt tgaacgcgga gcggaaagcg ggcgaacagt atcacctttt ttgcaccagc
      661 aaaagtgaca attccacttg cctggacggc ccggcgcgag tagttttacg cgatatttta
      721 gataatctct acaacaggat ctcctcgatg ccaagagcga acgaaatcaa aaaaggtatg
      781 gtactgaact acaacggcaa attgctgatt gtgaaagata tcgacattca gtcgcctacc
      841 gcccgtggcg ccgccacact gtataaaatg cgcttttccg atgtccgcac cggtctgaaa
      901 gtggaagaac gtttcaaagg cgacgatatc gttgataccg tcaccctgag ccgtcgcggc
      961 gttgactttt cttatgtcga tggcaacgaa tatgtgttca tggataaaga agactatacg
     1021 ccgtatacct tcaccaaaga tcagattgaa gaagagttgc tgtttatgcc tgaaggcgga
     1081 atgccggata tgcaggttct gacctgggac ggccaactgc tggcgctaga gcttccgcag
     1141 accgtggatc tggaaatcgt cgaaaccgcg ccgggtatta aaggagcgtc cgccagcgca
     1201 cgtaacaaac ccgcgacatt aagcaccggt ctggtgattc aggttcccga atacctgagc
     1261 gcaggtgaga aaatccgcat tcatatcgaa gagcgccgtt atatggggcg cgcggattaa
     1321 gtttcacatt tttcggctgc gccccagggc gcagtctgcc ccttttattt attgactgtt
     1381 ctgcaccagg caagagaaac gttaaaaatt taacattttc tgctcttaag atggcagaag
     1441 cacgacttcg tcaactcagc acttctcttt ttcacgttta ttcgccagga ttattaaaag
     1501 ttgttatgtt gtatcaatat tctggagctg acgtgaccaa aaccaatctt attactggat
     1561 ttctcggtag cggaaaaacc acctctatcc ttcatttatt agctcataaa gatccggctg
     1621 aaaagtgggc cgtcctggtt aatgaatttg gtgaagtggg tattgacggc gcgctgcttg
     1681 ccgacagcgg cgcactgcta aaagagattc ccggcggctg catgtgctgc gtcaacggat
     1741 tgcctatgca ggtggggctc aacacgctgc tgcgccaggg caaacctgac cggttgctga
     1801 ttgaaccaac cggactgggg cacccaaaac agattctgga tttattaact gcgccggttt
     1861 atgagccgtg gattgattta cgcgccacgc tctgcatcct ggaccctcgc ctgctactgg
     1921 accaacagag cgtcgccaat gaaaatttcc gcgatcagct cgcctcagcc gatattatca
     1981 tcgccaataa aaccgaccgc gccacggcgc agagcgatgc cgccctgcaa cagtggtggc
     2041 gacagtacgg cggcgatcgt caactgattc atgccgaaca tggacagata gacggtaagc
     2101 ttctggattt accgcgacaa aatctggcgg aactgccggc cagcgccgcg cattctcaca
     2161 ctcatgccag taaaaaagga ctcgccgcgc taaatctgcc cgcacagcag cgctggcgac
     2221 gcagcctcaa tagcggacag ggtcatcagg cctgcggctg gattttcgat gccgataccg
     2281 tgtttgacac cattggccta ctcgaatggg ctcgtctggc gccggtgggc cgggtgaaag
     2341 gcgttatgcg catacaagag gggctggtac gcatcaatcg ccagggcgat gacctgcaca
     2401 tcgaaacaca gagtgtcgcg ccgccggata gccgggttga acttatctca aacacagaaa
     2461 ccgactggaa tacgttacag acggccttgt tgaagcttcg tttagcgacg cacgcgtaag
     2521 gttgccaccg tttaaaaact atggcgaaat gacgatgaaa acccgctatt ccttgataat
     2581 tctgcttaat gccgccggtc tggcgctgtt tttgtcatgg tatcttcccg tcaatcacgg
     2641 tttctggttc accattgatt ccggcatatt ccacttcttt aaccagaaac tggtggaaag
     2701 ccacgcgttc ctctggtggg tcgctattac caataatcgg gcgtttgacg gctgttcgct
     2761 gctggcgatg ggcggactga tgctcagttt ctggctaaaa gaagacgcgt cgggccggcg
     2821 gcgcattgtg ataatcggat tggtcatgct gctaacagcg gtggtgctta accaactcgg
     2881 tcaggcgctg atccccgtca agcgcgccag tccaacgctc tcttttgagc atatttatcg
     2941 cgtcagcgag ttgctgcaca tcccgacaaa agacgcgtca aaagacagtt tcccaggcga
     3001 tcacggtatg atgctgctga tattttccgc ctttatgctg cgttatttcg gcaaaacggc
     3061 ggggattatc gcccttatta tatttgtggt tttcgcgttt ccgcgcgtta tgattggcgc
     3121 tcactggttc accgatattg tggttgggtc gctcacggtt attttgattg gcctcccctg
     3181 gtggctgatg accccgctca gcgaccgggc gatagcgctt tttgaggatt atctcccggg
     3241 cggaaataaa caaattttaa acaaataacc catacaatta acattgcctt cagcgatagt
     3301 tttacatcgt tgaaggtaat ttatgatgat attcccccag cccatcattt ttcggtaata
     3361 ttattcctct gcaaaatgaa caggttgcac gatttttaaa cgatttgcgc ttaatttgac
     3421 ccgtgctgat agctcacttt tcgtatcata aattcttata aaaaatcacg cgaaatcgct
     3481 cgcaatgaca gcaacaatcg ggtaatctca aactcgtttt gcctcgccag ataattattc
     3541 tcattgcgaa taaatttgtg cgttccgcca cagatttgtg cacaaagaat tgtctcaagc
     3601 tgtgcaggta attagtctca tcacgtttgg catttttata acgatattta tcgttaagga
     3661 cttcaaggga aaacaaacaa catggtcaaa tctcaaccga ttttgagata tattttgcgc
     3721 gggattcctg cgattgcagt tgcggttctg ctttctgctt gtagcacaac caccaatacc
     3781 gcaaagaata tgcattctga gacgcatgct gtgggcaata gcgatagctc ttcactgcaa
     3841 gcctctcagg atgaatttga aaatatggtg cgtaacctcg acgttaagtc gcggattatg
     3901 gatcagtatg ctgactggaa aggtgtgcgt taccgcctgg gcggcagcac taagaaaggc
     3961 gtcgactgtt ccagctttgt acagcgcacc ttccgcgaac agtttggttt agagcttccg
     4021 cgttcaacct atgaacagca ggaaatgggc aaagcggttt cacgcaataa cctgcgtacg
     4081 ggcgatctgg ttctgttccg cgccggttcc actggccgtc atgtcggtat ttatatcggc
     4141 aataaccaat ttgtccatgc gtctaccagt agcggcgtca ttatctccag tatgaacgaa
     4201 ccgtactgga aaaaacgcta caatgaagcg cgtcgagttc tgagccgcag ttaatcttca
     4261 tcaggcagca cctcccttgg cttacctgat gagacgacat aaaaagcact gcttcagcag
     4321 tgcttttgct tattatccct tctgaacccg ttttaccgaa tagcgacgtg tcgcctctta
     4381 tccagcctac aacacacgaa cataggcctg ataaacatag cgccatcaga cattcaggtc
     4441 gtttccgcca acgactactg cgacaatacg ctttcctgcg catcacagaa aagcatgact
     4501 atccggggta atccaggcta tagtcttata aatcaaccag tttaaccggc atctgccttt
     4561 tcaggtcaca ccaggaatta tgcttacacg cgactcctct tccggtcgga aaatcctgct
     4621 tacctgtatc attacgggga tagcggcagc attacttatt ggtagcctgc aatttttcct
     4681 gtcgtggcat aaacgggatg ttaaatacaa tacgctcctt tctgatgtac aacattacct
     4741 agccagctat ttcgccgacc tgaaagccac caccgatatt cttcagccgt tgacgatcaa
     4801 cacctgtcag caggttggcg cagaactcac ctcaagagcc gcttttagcc ttaatgtccg
     4861 cgccttctta ttgattaaag ataaaaaagt gttctgctct tccgccactg gcgccatgaa
     4921 tatgccgctt cagcaactgg taccggatat agatatccgc aaagacgttg ctatggcgat
     4981 tctgcccggc acgccaatga tgcccaacaa accgacaatg gtgatttggt atcgaaaccc
     5041 attattaaat aacagcggcg tattcacatc gctgaatatt aacctgacgc cctacttact
     5101 ctataccacg cgccaggacg attttaacgg catcgcgctg attgtcggca ataccgcgct
     5161 gtcgaccttt tcttcgcgtc tgctgaccgt cgcggagctg ccgggcacgc cttcacgaca
     5221 ggcaactatc aacggcctgc cgcttaaaat acagctttat gccgatagct ggacctacaa
     5281 tgacttgtgg tatgcgttga tgctgggctg cattagcggc atcgtagcgg ggtttatctg
     5341 ttactttatc tatgccctcc ggacgcgacc gggcaaagag attttaacgg cgatcaaaca
     5401 cgagcagttt tatgtggttt atcagcccgt cgtcgatact cgtacgctaa gcgtcaccgg
     5461 gcttgaagtc ttactgcgct ggcgtcaccc tacggcaggc gagattccgc cggatgcctt
     5521 tatccactat gccgaagcgc agcaacttat cgtaccgtta acgcagcatc tgttcgagct
     5581 gatcgcccgc gacgcaccca cgctacagaa ggtgatgccc gtcggtgcca aatttggcat
     5641 taacatcgcg ccggaacatc tgcacagcga cagttttaaa gaggatatgc accggctcag
     5701 ggacgccctg cccgcgcacc attttcatat cgtgctggaa atcactgaac gcaatatgct
     5761 tcagcagtat gaagcggcca aactgttcga atggctgcat tccgccgggt ttgaaatcgc
     5821 tatagatgat ttcggtacag gccatagcgc cctgatttat ctggagcgat ttactttaga
     5881 ttatctgaaa attgatcgcg gctttatcca ggcgatcggc acggaaaccg tcacgtctcc
     5941 ggttctggat accgtgctga cgctctccag acgcctgaat atgctgacgg tggccgaggg
     6001 cgttgaaacg ccggagcagg cccgttggct acgcgatcac ggtgttaatt acttgcaggg
     6061 gtactggatt agccgtcctt tacccctaaa agatttcgtg ctgtggatgt cggcgccttc
     6121 cgtgcctgaa tggtagtccc cttacggttt taacggattc acatcagacg caacgtcact
     6181 tattattcag cgaaacgcct gccggtttgc agcgggcaat acgataagga aaccgccttc
     6241 agatgattgc gcgcgtaatg cttctgcttg tcgcactggt tagcgctggc gcccaggccc
     6301 aggaaatcaa agaaagctac gctttcgccg tactcggcga acctaagtat gcttttaact
     6361 ttgatcactt tgattatgtg aatcctgctg cgccgaaagg cggtcagatg acgctttccg
     6421 ccattggtac gttcgataat ttcaatcgct attcgctgcg cggcaatccc ggcgtacgta
     6481 ccgaagccct ttacgatacg ctttttacca cctcggatga tgaacccgga agctattacc
     6541 cgctgattgc cgaccatgcc cgctatgccg ccgactattc ctgggtggaa atctcgatta
     6601 acccccgcgc tcgttttcac gatggcacgc ccattaccgc ccgcgatgta gcctttacct
     6661 ttcataagtt tatgaccgaa ggcgtaccgc agttccgtct ggtctataaa ggtactaccg
     6721 tgaaggcgat tgcgccttta accgtgcgaa ttgagctggc gaagcctggt aaagaagaca
     6781 tgcttagtct gttttcacta ccgatcatgc ccgaaaaatt ctggaaaaat cacaaactca
     6841 gcgatccact ttcaacgccg cccttagcca gcgggccata ccggattact cagtggaaaa
     6901 tgggccagta cattgtctat tcacgcgtca aaaactactg ggcggctaat ctgccggtca
     6961 atcgtggacg ttttaacctc gacactgtcc gctacgatta ctaccttgat gacaatgtcg
     7021 ctttcgaggc gtttaaagcg ggcgcatttg atctacggct ggaaaacgac gctaaaaact
     7081 gggcaacgcg ctatatcggt aaaaatttcg ataatcatta catcattaaa gaagagcaga
     7141 aaaacgagtc ggcgcaggac acacgctggc tggcctttaa tattcagcgc ccggtattta
     7201 aagaccggcg ggtacgtgaa gccgtcaccc tggccttcga ttttgagtgg atgaataaag
     7261 cgctgttcta taatgcctgg agccgaacca acagttactt ccagaatacc gagtacgccg
     7321 ccagaaatta tcctgacgcc gacgaactgg tattactcgc gccgatgaaa aaagatcttc
     7381 ctcctgaagt cttcactcag atctatcagc cgccggtctc taacggcgac ggctacgatc
     7441 gcgaaaatct tcttaaagct gacgccttgt tgacgcaggc cggatgggtg atcaacggac
     7501 agcaacgggt caatagcgtc accggtaagc ctctgacgtt tgaacttctc cttcctgcca
     7561 gcagtaatag ccagtgggtt ctgcccttcc agcataatct tcagcgtctg ggcattacga
     7621 tgactatccg tcaggttgat aattctcaac tcaccaaccg gatgcgtagc cgcgactatg
     7681 acatgatgcc gaggctatgg cgggcgatgc cctggcccag ctccgatcta caaatctcat
     7741 gggcgtcgga atacattgac tccagttata acgctcccgg cgtacaaagc ccggtggtgg
     7801 ataagctgat cgcgcaaatt atcgcagcgc agggtgataa agcgaaactg gtgccgctgg
     7861 gacgggcgct ggatcgcgtg ctgacctgga actattacat gctgccgatg tggtatatgg
     7921 cgcaagacag gctcgcctgg tgggataaat tctcccatcc ggcgattcgc ccggtatata
     7981 ccatcgggtt agatacctgg tggtatgatg tcaacaaagc cgccaagcta ccggcagcca
     8041 ggaggtagta agaatcaatg ggtgcctatc ttatccgccg tctgttactg gtgatcccca
     8101 cgctatgggc cattattacc attaactttt ttatcgtgca gatcgctccc ggcggccctg
     8161 tcgatcaggc tattgccgcg attgaatttg gtcagggcgg cgcgttgccc ggcgccagcg
     8221 gcgaaggcgt tcgcgccagt catgcgcaaa ccggcgtcgg caatatcagc gacagccatt
     8281 atcgcggcgg ccggggactc gatccggagg tgatcgcgga gatcacccat cgctacggct
     8341 tcgacaaacc gctgcatgag cgttatttca agatgctacg ggactatctc tcttttgact
     8401 tcggcgacag tctgtttcgc agcgcatccg tactaacgct gatcaaagat agccttcccg
     8461 tctccattac cctgggatta tggagcacgc tgattattta tctggtgtct atcccgctgg
     8521 ggattcgcaa agccgtccat aacggcagtc gctttgatgt gtggagcagc gcgtttatca
     8581 ttattggtta tgcgatcccc gcctttctgt tcgctatttt attaatcgtc ttttttgccg
     8641 gcggcagcta ctacgatatc tttccgctac gtggcctggt ctccgccaac tttgacacgt
     8701 taccgtggta ccagaaaatc accgattatt tgtggcatat tacgctgccg gtgttggcga
     8761 ccgtcatcgg cggttttgcc gccctgacga tgctgacgaa aaattcgttt ctcgacgagg
     8821 tgcgtaaaca gtatgtcgtt accgctcgcg ctaaaggcgt gagtgaaaaa aacattctct
     8881 ggaaacatgt ttttcgtaac gccatgctgc tggtgatcgc cgggtttccc gccactttta
     8941 tcagtatgtt tttcaccggc tcgttgctaa ttgaagtcat gttctcgctc aacggcctgg
     9001 ggctgctggg ttatgaagca accgtttcgc gcgactatcc ggtgatgttc ggcacgcttt
     9061 atatctttac cctgattggc ttattactga atatcctgag cgatatcagc tatacgctgg
     9121 tcgatccacg cattgatttt gagggacgat aatgccgcga ttaagcccgg tcaatcaggc
     9181 ccgctgggcg cgtttccgcc ataatcgccg gggctactgg tcactatgga ttttcctggt
     9241 agtgttcagc ctgagcttat gcgcggaact gattgctaac gataagccat tgctggtgcg
     9301 ctatgaaggc cagtggtatt ttccgctggt aaaaaattac agcgagcgcg atttcggcgg
     9361 cccgctggcg acaacggcag actatcagga cccctggcta caacggcagc ttgagaatcg
     9421 gggctgggtg ttgtgggccc ccgtacgctt tggcgccaat accattaatt ttgccaccac
     9481 gcagcctttc ccctccccgc cttcggcgaa aaactggctg ggcaccgatg cgaatggcgg
     9541 cgacgttttc gcccgcatcc tgtacggcac ccgcatttct attttatttg gcctgatgtt
     9601 aacgatttgc tccagcgtca tgggtgtact ggcgggcgcg ctacagggct attatggcgg
     9661 caaagtcgat ttatgggggc aacgtctcat cgaagtctgg tcggggatgc cgaccctgtt
     9721 tctgattatt ttactttcca gcgtagtgca gcctaacttc tggtggctgc tggccataac
     9781 cgtgctgttt ggctggatga gtctggtggg cgtggtgcgc gccgagtttt tacggacccg
     9841 caattttgac tatatccgcg ccgcgcaggc gcttggcgtc agcgatcgtg acattatcct
     9901 gcgccatatg ttgcctaatg cgatggtcgc taccctgaca tttttaccgt tcattttatg
     9961 tagttccatc accaccctga cgtcgctgga ttttctggga ttcggtctgc cgcttggctc
    10021 cccttctctc ggcgaacttc ttttacaggg gaaaaacaac ttacaggctc cctggctggg
    10081 gatcgccgcc tttctgtctg tcgccattct gctatcgctg ctgattttta tcggcgaagc
    10141 ggtacgcgac gcctttgatc ctgctaaggc ggtataagat gacatctcca ttgcttgcga
    10201 ttgaaaattt atcggtaggt ttccgtcagc aacagcacgt gcgccctgtc gttaacgcca
    10261 tttcgttaca ggtgaacgcc ggggaaacgc tggcgctggt cggcgagtca gggtcaggaa
    10321 aaagcgtgac ggcgctttcc attctgcgtc ttttgcctac ccctcccgcc gtctacctct
    10381 ccggcgatat tcgctttcac ggcgaatcat tgcttcatgc cagcgagcag acgctacgcg
    10441 gcgtacgcgg caataaaatc gccatgattt ttcaggaacc gatggtttca cttaacccac
    10501 tgcatacgct ggaaaaacag ctctatgaag tgctgtcgct ccatcgggga atgcgtcggg
    10561 aggcggcaag ggcggagatg atcggttgtc tggatcgggt cggtatccgc caggcgagcc
    10621 agcgtctgcg cgattatccg catcagcttt ccggcggcga acgccagcgc gtcatgatag
    10681 ccatggcgct gttaacacgg ccggaattac tgatcgccga tgagccgacc accgccctcg
    10741 acgtctccgt acaggcgcag atcttatctc tactgcggga actccagcgt gagctcaata
    10801 tgggattgct gtttatcacc cataacctca gcattgtaaa aaaactggcg gattcagtgg
    10861 cggtaatgca acacggcaag tgcgtagaga accaacgcgc cgacacgctg ctctccgcgc
    10921 cgacccatcc gtacacgcaa aaactactca acagcgaacc cactggcgat ccggttccgc
    10981 tccccgccgg gcaggcgccg ttgctggaag tggacaagct gcgcgtcgcc ttcccaatcc
    11041 gcaaaggcat tctgaagcgc gtcgtggatc ataatgtggt ggttaacaat atcagtttca
    11101 ccctgcatcc aggcgaaacg ctgggtctgg tcggcgagtc aggatcggga aaaagcacca
    11161 ccggtctggc gctgttacgg cttatccgct ccgaaggccg catcgtgttt gacggtcaat
    11221 cgctggatac gttaaaccgc cgccagcttt tacctgttcg ccaccgtatc caggtcgtat
    11281 tccaggaccc gaactcatcg ctaaacccgc gtttaaacgt attgcaaatt atcgaagaag
    11341 gcctgcgcgt ccaccagcct acgctttcag gcgcgcagcg cgaacagcag gtgaaagcgg
    11401 tcatgatgga agtcggcctg gacccggaaa cgcggcatcg ttaccccgct gagttttccg
    11461 gcggccagcg tcaacgtatc gccgtcgcca gggcgctgat tttaaaaccg tcgcttatta
    11521 ttctggatga accgacctca tcgctggata aaaccgttca ggcgcagatt cttgccctcc
    11581 tgaaatcgct ccagcaaaag caccgtctgg cctatatctt cattagccac gatctgcatg
    11641 tagtacgcgc gctgtgccat caggttatcg tgctgcgaca gggggaggtg gttgaacagg
    11701 ggcaatgcga gcgcgtgttt accgcaccgc aacaagcgta tacgcgtcag ctactcgcgt
    11761 taagctgacg cctaaaaagg attattgtta gaaaaaggtt ccgctatcgc cacgccgaaa
    11821 tttttcagcc gacaggtggc ggcaaactca tcctgacgat taacgaacag gcacggttcc
    11881 ccttcgcact ccagcacgga gcaaggaact tcaatatcgc ttagcgcctg gctgagctta
    11941 tgcatcactg accacgcgct atcgcctgcc ggactcaaca gtttaagcgc caccagacta
    12001 ttctcggtgc tctgcccgtt ttgcggaatc ggttcaacct ttgaccccgc aaaacccgcc
    12061 gaccagcgat agttttgcgg cagacggtga acaattgaga gctgtaatgt attcactttc
    12121 tttccccgga agcacaatta cttcacaatt tacttacatt tatattaaca catcattgac
    12181 aacccgtcct taaacagatt gctaacgccc ttctctccgt cagtggctct acagcaagcg
    12241 ggagttaaaa tagttttacc gacgcggaga tagcggcggg ctatatgtac ccgtttctgc
    12301 gatctaactc aaccttttta actacaatga tgtgactttt tacataaatg gattttacat
    12361 aaaataaaca
//
LOCUS       DAJVSD010000126        12221 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.126, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000126 DAJVSD010000000
VERSION     DAJVSD010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 12221)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12221)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12221
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.126"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            79..1722
                     /locus_tag="OQP62_002771"
     CDS             79..1722
                     /locus_tag="OQP62_002771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis citrate transducer"
                     /protein_id="HCS1722284.1"
                     /translation="MKNIKVITGVIATLGIFSALLLVTGILFYSAVSSDRLNFQNASA
                     LSYQQQELGGSFQTLIETRVTINRVAIRMLKNQRDPASLDAMNTLLTNAGASLNEAEK
                     HFNNYVNSEAIAGKDPALDAQAEASFKQMYDVLQQSIHYLKADNYAAYGNLDAQKAQD
                     DMEQVYDQWLSQNAQLIKLASDQNQSSFTQMQWTLGIILLIVLIVLAFIWLGLQRVLL
                     RPLQRIMAHIQTIADGDLTHEIEAEGRSEMGQLAAGLKTMQQSLIRTVSAVRDNADSI
                     YTGAGEISAGSSDLSSRTEQQASALEETAASMEQLTATVRQNTDNARQATGLAKTASE
                     TARKGGRVVDNVVSTMNDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQG
                     RGFAVVAGEVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTR
                     VTDIMGEIASASDEQSKGIEQVAQAVSEMDSVTQQNASLVEESAAAAAALEDQANELR
                     QAVAAFRIQKQPRREASPTPLSKGLTPQPAAEQANWESF"
     gene            complement(1746..1991)
                     /gene="tusA"
                     /locus_tag="OQP62_002772"
     CDS             complement(1746..1991)
                     /gene="tusA"
                     /locus_tag="OQP62_002772"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA"
                     /protein_id="HCS1722285.1"
                     /translation="MSDLFSSPDHTLDALGLRCPEPVMMVRKTVRNMQTGETLLIIAD
                     DPATTRDIPGFCTFMEHDLLAQETEGLPYRYLLRKAH"
     gene            2161..2826
                     /locus_tag="OQP62_002773"
     CDS             2161..2826
                     /locus_tag="OQP62_002773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HCS1722286.1"
                     /translation="MTPFTQSQRIKALFWLSLFHLLVIISSNYLVQLPITIFGFHTTW
                     GAFSFPFIFLATDLTVRIFGAPLARRIIFAVMIPALLVSYVVSSLFYMGAWQGFAALA
                     NFNLFVARIAAASFMAYALGQILDVHVFNRLRQNRRWWLAPTASTLFGNISDTLAFFF
                     IAFWRSPDAFMAGHWMEIALVDYCFKVLISIIFFLPMYGVLLNMLLKKLADKSEISPL
                     PAS"
     gene            2899..3456
                     /locus_tag="OQP62_002774"
     CDS             2899..3456
                     /locus_tag="OQP62_002774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DcrB family lipoprotein"
                     /protein_id="HCS1722287.1"
                     /translation="MRNLVKYAGIGLLVMGLAACDNNDTKASAESAAAESQASGQPIS
                     LMDGKLSFSLPADMTDQSGKLGTQANNMHVYSDPTGQKAVIVIVGDNTDEALPVLANR
                     LLEQQRSRDPQLQVVTNKSIELKGHTLQQLDSIISAKGQTAYSSIVLGKVDNQLLTIQ
                     VTLPADNQQKAQTTAENIINTLVIK"
     gene            complement(3460..4719)
                     /locus_tag="OQP62_002775"
     CDS             complement(3460..4719)
                     /locus_tag="OQP62_002775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462482.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1722288.1"
                     /translation="MIEKKTCCKNAVILMPEPVAEPALNGLRLNLRIVSIVMFNFASY
                     LTIGLPLAVLPGYVHDAMGFSAFWAGLIISLQYFATLLSRPHAGRYADVLGPKKIVVF
                     GLCGCFLSGLGYLLADIASAWPMINLLLLGLGRVILGIGQSFAGTGSTLWGVGVVGSL
                     HIGRVISWNGIVTYGAMAMGAPLGVLCYAWGGLQGLALTVMGVALLAVLLALPRPSVK
                     ANKGKPLPFRAVLGRVWLYGMALALASAGFGVIATFITLFYDAKGWDGAAFALTLFSV
                     AFVGTRLLFPNGINRLGGLNVAMICFGVEIIGLLLVGTAAMPWMAKIGVLLTGMGFSL
                     VFPALGVVAVKAVPPQNQGAALATYTVFMDMSLGVTGPLAGLVMTWAGVPVIYLAAAG
                     LVAMALLLTWRLKKRPPSALPEAASSS"
     gene            4809..5858
                     /locus_tag="OQP62_002776"
     CDS             4809..5858
                     /locus_tag="OQP62_002776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HCS1722289.1"
                     /translation="MATAQPDKTGMHILLKLASLVIILAGIHAAADIIVQLLLALFFA
                     IVLNPLVTWFIRRGVKRPLAITIVVVVMLIVLTALVGVLAASLNEFIAMLPKYSKELT
                     RKVLHLQELMPFLNLHMSPERMLRGMDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVF
                     MLFEVRHVPYKLRFALNNPQIHIAGLHRALKGVSHYLALKTLLSLWTGAIIWLGLALM
                     DIQFALMWGVLAFLLNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIG
                     NIMEPRMMGHRLGMSTLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKIWMETTKGGSKL
                     AILLGPGRPKSRLPG"
     gene            5910..6488
                     /gene="acpT"
                     /locus_tag="OQP62_002777"
     CDS             5910..6488
                     /gene="acpT"
                     /locus_tag="OQP62_002777"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase AcpT"
                     /protein_id="HCS1722290.1"
                     /translation="MYQIVLGKVSTLSAGQLPDALIAQAPQGVRRASWLAGRVLLSRA
                     LSPLPEMVYGEQGKPAFSAGTPLWFNLSHSGDTIALLLSDEGEVGCDIEVIRPRDNWR
                     SLANAVFSLGEHAEMEAERPERQLAAFWRIWTRKEAIVKQRGGSAWQIVSVDSTLPSA
                     LSVSQCQLDTLSLAVCTPTPFTLTPQTITKAL"
     gene            6579..6980
                     /gene="nikR"
                     /locus_tag="OQP62_002778"
     CDS             6579..6980
                     /gene="nikR"
                     /locus_tag="OQP62_002778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-responsive transcriptional regulator
                     NikR"
                     /protein_id="HCS1722291.1"
                     /translation="MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRGALAQEA
                     TQEHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLK
                     GDMGDVQHFADDVIAQRGVRHGHLQCLPKED"
     gene            complement(7085..7906)
                     /locus_tag="OQP62_002779"
                     /pseudo
     CDS             complement(7085..7906)
                     /locus_tag="OQP62_002779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462486.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(7906..10647)
                     /gene="rbbA"
                     /locus_tag="OQP62_002780"
     CDS             complement(7906..10647)
                     /gene="rbbA"
                     /locus_tag="OQP62_002780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated ATPase/putative transporter
                     RbbA"
                     /protein_id="HCS1722292.1"
                     /translation="MTSLTLVPVPPVAQLEGVSQHYGKTVALNNITLDIPARSMVGLI
                     GPDGVGKSSLLSLISGARVIEQGNVIVLGGDMRDAKHRRDVCPRIAWMPQGLGKNLYH
                     TLSVYENVDFFARLFGHDKAEREARITELLNSTGLAPFRDRPAGKLSGGMKQKLGLCC
                     ALIHDPELLILDEPTTGVDSLSRAQFWDLIDSIRQRQTNMSVLVATAYMEEAERFDWL
                     VAMNAGEILATGSAQQLRAKTHSATLEQAFIALLPEAQRQAHKPVVIPPYHAEQEEIA
                     IEAKDLTMRFGKFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGQAW
                     LFGQPVDPNDIDTRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPPAEIPARVAQMI
                     ERFMLTEVEDTLPASLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLM
                     VDLSRQDKVTIFISTHFMNEAERCDRMSLMHAGKVLASGTPQELVQQRGAANLEAAFI
                     SWLQEAAGAAPETPIPPSQTPAASDKPSRQGLSFRRLFSYSRREALELRRDPVRSTLA
                     LLGTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQAWSLNLAGSRYFIEQPPLASYD
                     ELDRRMRSGELAVAIEIPPNFGRDIARGTPAQIGVWVDGAMPSRAETVKGYVQAMHQS
                     WLQEAASRQPNPVKQTGLLNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSALSV
                     VREKELGPMINLYVTPTTRSEFLLGKQLPYIALGMLNFLLLCALSVFVFGVPLKGSFL
                     TLTLAALLYVIIATGLGLLISTFMKSQIAAIFGTSIITLIPATQFSGMIDPVASLEGP
                     GRWIGEIYPTSHFLTIARGTFSKALDLSDLWSLFMPLLIAVPVVMGLSILLLKKQEG"
     gene            complement(10644..11711)
                     /locus_tag="OQP62_002781"
     CDS             complement(10644..11711)
                     /locus_tag="OQP62_002781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HCS1722293.1"
                     /translation="MDKMKRHLVWWGAGILVAVAAIAWWMLRPAGIPEGFAASNGRIE
                     ATEVDIATKIAGRIDTILVSEGQFVRQGEVLAKMDTRVLQEQRLEAIAQIKEAESAVA
                     AARALLEQRQSEMRAAQSVVKQREAELDSVSKRHVRSRSLSQRGAVSVQQLDDDRAAA
                     ESARAALETAKAQVSAAKAAIEAARTSIIQAQTRVEAAQATERRIVADIDDSELKAPR
                     DGRVQYRVAEPGEVLSAGGRVLNMVDLSDVYMTFFLPTEQAGLLKIGGDARLVLDAAP
                     DLRIPATISFVASVAQFTPKTVETHDERLKLMFRVKARIPPELLRQHLEYVKTGLPGM
                     AWVRLDERVPWPDDLNVRLSQ"
BASE COUNT         2870 a         3555 c         3223 g         2573 t
ORIGIN      
        1 gcgcgatttg atgtaaggtt aatttttatc caaccgatat tgatcatacc gtctacaaaa
       61 taaggaatgt taggcactat gaaaaatatc aaagtcatca ccggcgttat cgcgacgctg
      121 ggcatattta gcgccttatt gttggtgaca ggaatactgt tttattccgc cgtcagcagc
      181 gatcggctga atttccagaa tgcgagcgca ctgagttacc aacaacagga actgggcggc
      241 agttttcaga cattgattga aacccgcgtc accattaacc gcgtggcgat acgcatgtta
      301 aaaaatcagc gcgatcccgc ctcgctggac gccatgaaca cgctgttaac caacgctggc
      361 gcgtcgctca acgaagcgga aaagcatttc aacaactacg tgaactccga agcgatcgca
      421 ggcaaagatc cggcgttgga tgcccaggcc gaagccagct ttaagcagat gtatgacgtt
      481 ttgcagcagt ctatccacta tcttaaagcc gataattacg ccgcctatgg caaccttgac
      541 gcgcaaaaag cgcaggatga catggagcag gtatatgacc agtggctctc tcaaaatgcg
      601 caattaataa aattagccag cgatcagaat cagagcagtt ttacccagat gcaatggacg
      661 ctggggataa ttctacttat cgtgctcatc gtgctggcgt ttatctggct ggggctgcaa
      721 cgcgttctac tccgcccgct gcaacggatt atggcgcaca ttcaaacgat cgccgacggc
      781 gatcttaccc atgagataga ggctgaagga cgtagtgaaa tgggccaact ggctgccggt
      841 ctcaaaacga tgcagcagtc gttaatccgt accgtcagcg cggtgcgcga taacgcagac
      901 tctatctata ctggcgcagg cgaaatttcc gctggcagca gcgacctctc ttcccgtacc
      961 gaacagcagg cctcggcgct ggaggagacc gccgccagca tggaacagtt aaccgccacg
     1021 gtacggcaaa acaccgataa cgcacgacag gcgacgggtc tggcgaaaac cgcatcagaa
     1081 accgcgcgta aaggaggacg cgtggtggat aacgtagtga gcaccatgaa cgatatcgcc
     1141 gaaagctcgg aaaaaatcgt ggacatcacc agcgtgattg acggtatcgc cttccagact
     1201 aatatcctgg cgctgaacgc tgcggtagaa gccgcccgcg ccggcgaaca ggggcgagga
     1261 ttcgcggttg tggccggaga ggtacgcacg ttggccagcc gtagcgcgca ggccgccaaa
     1321 gagatcaaag tgctgattga aaactccgtg tcgcgcattg ataccggctc tacgcaggta
     1381 cgcgaagcgg gagaaaccat gaaagagatc gttaacgccg tgacccgcgt gaccgatatt
     1441 atgggcgaaa tcgcctctgc ctccgatgag caaagcaaag gcattgagca ggtggcgcag
     1501 gcggtatcgg aaatggacag cgtgacgcag caaaacgcct cgctggtaga ggaatccgca
     1561 gcagcagcgg cggcgctgga agatcaggct aacgagcttc gtcaggcggt cgccgcgttc
     1621 cgcatccaga aacaacctcg tcgggaggcg tcgccgacgc cgttaagcaa aggcttaacg
     1681 ccacagcccg ccgcagaaca ggcgaactgg gaaagcttct aatcagaatg ctatctgccg
     1741 tgcggttaat gcgctttacg caataaatag cggtacggca gaccctccgt ctcttgcgcc
     1801 agcaaatcgt gttccataaa ggtacagaac cccggaatat cacgcgtcgt cgccggatcg
     1861 tcggcgataa tcagcaatgt ttcgccagtt tgcatgttgc gcaccgtttt gcgcaccatc
     1921 attaccggtt cagggcaacg cagccccagg gcgtcaagcg tatggtcagg ggaggaaaac
     1981 agatcgctca tcttcgtctc aatggtagaa aaacggcgat attttacgcc catcttcgtc
     2041 agtaagccaa gcaggttaac gattgcgtga aaattagcca ttgcaatgcc agcgcaaaac
     2101 agtattatgc ggcggttctt tattgggttc cctcacccca tccaacaaaa aggtcacaat
     2161 atgactccgt ttacacaatc acagcgcata aaagcgttgt tctggctatc gctattccat
     2221 ttactggtga tcatttccag taactatctg gtgcagctcc ccatcactat ttttggtttc
     2281 cacacgacct ggggcgcgtt tagttttcct tttatttttc tcgccaccga tcttaccgtg
     2341 cgtatttttg gcgcaccgct ggcgcgccgc attatcttcg ccgtcatgat ccctgcgctg
     2401 ctggtgtcat atgtggtgtc atcgctgttc tatatgggtg cctggcaagg tttcgccgcg
     2461 ttggcgaact ttaatctgtt cgtcgcccgt atcgccgccg ccagctttat ggcctacgcg
     2521 ctgggacaga tccttgatgt ccatgtgttt aaccgcctgc gccaaaatcg tcgctggtgg
     2581 ctggcgccga ccgcttcaac gctgtttggc aatatcagcg atacccttgc ctttttcttc
     2641 attgcgttct ggcgaagccc cgatgccttt atggccgggc actggatgga aattgcgctg
     2701 gtggattatt gctttaaggt gctcatcagc attattttct tcctgccgat gtacggcgtt
     2761 ctactgaata tgttgctgaa aaagctggca gataaatctg aaatttcccc attaccggca
     2821 agttaaaggt tcgttttccg agttgtgata agatgagcga atgagccgtt atggccgttt
     2881 atcgaaagga agaagtcaat gcgcaatttg gttaaatatg ccggtattgg cctgctggtt
     2941 atggggcttg cggcctgtga taacaacgat acaaaagcgt cggcagaaag cgccgccgca
     3001 gaaagccagg cctccggtca gcccatcagc ctgatggatg gcaaactcag tttctcactg
     3061 ccggcggata tgaccgatca aagcggtaag ctgggcaccc aggcgaataa tatgcacgtt
     3121 tattctgacc cgacgggcca gaaagcggtg attgttatcg tcggcgataa taccgatgaa
     3181 gcgttgccgg tgctggcgaa ccgcctgctt gagcaacagc gtagccgcga cccgcagctt
     3241 caggtcgtca ccaataagtc tattgagctc aaaggccata cgttgcaaca gctggacagc
     3301 attatctccg cgaaaggcca gacggcgtac tcttccatcg tgctgggcaa agtggataac
     3361 caattgctga cgattcaggt cacgctgcct gcggacaatc agcaaaaagc gcaaaccaca
     3421 gctgaaaaca tcatcaatac gttggttatt aagtaacctt cacgacgatg atgcggcctc
     3481 cggcagtgca gacggaggcc gtttttttaa gcgccaggtc agtaatagcg ccatcgctac
     3541 cagcccggcc gccgccagat aaatcaccgg cacgcccgcc caggtcatca ccagccccgc
     3601 cagcggcccg gtcaccccca aagacatatc cataaagacg gtataggtcg ccagcgccgc
     3661 gccctggttc tgcggcggca cggctttgac ggccaccaca cccagcgccg gaaagaccag
     3721 cgaaaacccc atccccgtga gtaaaacgcc gatttttgcc atccacggca tggctgccgt
     3781 ccccaccagt aacagaccaa taatctccac gccaaagcag atcatggcga cattcaaccc
     3841 gcctaagcga ttgataccgt tagggaacag caaacgcgtg ccgacaaacg cgacgctaaa
     3901 taacgtgagc gcaaaggcgg cgccatccca acctttagca tcataaaata aggtaataaa
     3961 cgtcgcgatg acgccaaacc ctgccgaggc cagcgccaac gccataccat acagccagac
     4021 acgccccagc accgcgcgaa acggcagcgg cttgcctttg ttcgccttca ccgacggacg
     4081 tggaagggct aacagtaccg ccaacagcgc cacgcccatc accgttagcg ccagtccctg
     4141 taacccgccc caggcataac acagcacgcc cagcggcgcg cccatcgcca ttgcgccgta
     4201 ggtgacgata ccgttccagg agataacccg accaatatgc aacgacccga cgacgccgac
     4261 gccccacagt gtcgaaccgg tgccggcaaa actttgccca atccccaaaa tcacgcgacc
     4321 cagccccagt agcaacaaat tgatcatcgg ccaggcgctg gcgatatccg ccagcaggta
     4381 gccgagtccg cttaaaaaac agccgcataa gccaaagaca acgatttttt tcggccctaa
     4441 tacatccgca taccgcccgg catggggacg gcttaacaga gtggcgaagt attgcaggct
     4501 gataataagc cccgcccaga acgcgctgaa tcccatcgca tcatgcacat agccgggcaa
     4561 gacggcgagc ggcaggccga tagtcaggta gctggcaaag ttaaacatca cgatggagac
     4621 aatacgcaga ttgaggcgca atccgtttag cgccggttca gcgacgggtt cgggcatgag
     4681 tatcaccgca tttttacaac atgttttctt ttctatcatg gcgcgcggtg aaaatcagta
     4741 gtgagattca gattatcggt atcagggcag ccgctacact tagaaaaaaa cacaacaagg
     4801 aaaacttcat ggcaaccgct caacccgaca aaacgggtat gcatattctg ctgaaactgg
     4861 cctccctggt tattattctc gccgggattc atgccgcggc ggatattatt gtacaactct
     4921 tactggcgct ctttttcgcc atcgttctta atccattagt gacctggttt attcgccggg
     4981 gcgtgaagcg accgctggcg attactatcg tggtggtcgt catgctgatc gtgcttaccg
     5041 cgctggtggg tgtgcttgcc gcatcgctta atgaatttat cgctatgctg cctaaataca
     5101 gcaaggagct gacgcgtaag gttttacatc ttcaggagtt aatgcccttc ctgaatttac
     5161 atatgtcgcc ggaacgtatg ctccgtggga tggattccga taaaatcatg ctcttcacca
     5221 caacattaat gaccggcgta tcgggcgcga tggcaagcat tgtgctgctg gtgatgaccg
     5281 tggtttttat gctgtttgag gtgcgtcacg tgccttataa attacgtttc gcgcttaaca
     5341 atccacaaat ccatattgcc ggcctgcacc gcgccctgaa aggcgtctcg cattatctgg
     5401 cgctgaaaac gctgctcagt ctatggacgg gcgcgattat ctggctgggg ctggcattaa
     5461 tggatattca gtttgcgcta atgtggggcg tactggcctt tttgctcaat tacgttccta
     5521 atatcggctc ggtgatttcc gccgttcccc ccatgattca ggcgttgtta tttaacggct
     5581 tttacgaatg cgtactggtc ggcgcgctct ttttggtggt tcatatggtg attggcaaca
     5641 ttatggagcc acgcatgatg ggccatcgtc tggggatgtc cacgctggtg gtatttcttt
     5701 cgttactggt ctggggatgg ctattaggcc cggtcgggat gctcttgtcc gttcctttga
     5761 ccagcgtctg caaaatctgg atggaaacca ctaaaggcgg cagcaaactg gcgatcttac
     5821 tggggccagg ccgaccgaaa agccgtttac cgggatgagg cgacagatgc tacaatctcc
     5881 tcttcttcat aggcaacgtt ggtcctgata tgtaccagat cgttctggga aaagtgtcaa
     5941 cattaagcgc aggtcaattg cccgacgcgt taatcgctca ggcgccgcag ggcgttcgcc
     6001 gggcaagctg gctggccggg cgcgtgctgc tttcccgtgc gctctcgccg ctaccggaga
     6061 tggtgtatgg cgaacagggt aaaccggctt tttccgccgg aacgccgctg tggtttaacc
     6121 tcagccatag cggcgacact attgctctgt tgcttagcga cgaaggtgaa gtcggctgcg
     6181 atattgaagt gatccgcccg cgcgataact ggcgttcgct ggcaaatgcg gtattcagcc
     6241 tcggcgaaca tgctgaaatg gaagcggaac gtccggagcg acaactggcg gccttctggc
     6301 gtatctggac gcgtaaagaa gccatcgtaa aacaacgcgg cggcagcgcc tggcaaatcg
     6361 tcagcgtgga cagcacgttg ccctctgcct tgtcggtcag ccagtgtcag ctcgatacgc
     6421 tcagtctggc agtctgtacc cccacaccgt ttacgctgac gccgcagacg ataacaaaag
     6481 cgttatgaca cattaatttt ccctctggcg gcggacgtgt gttacaaaat gcggagcttc
     6541 ccatgcgccg acgcgccata ccaaaaggtt taagtcagat gcaacgtgtc accatcaccc
     6601 tcgatgacga tttactggaa acgctggaca gcctgagcca gcgacgcggc tataacaatc
     6661 gctccgaagc gatccgtgat attctgcgcg gcgctctggc gcaggaggcc acccaggaac
     6721 acggtacaca gggtttcgcg gtactttcat atgtttatga acatgagaaa cgggatttag
     6781 ccagccgcat cgtctccacc cagcatcatc atcatgattt atccgtcgcc acgctgcacg
     6841 tccatatcaa ccacgatgac tgtctggaga tcgccgttct gaagggcgat atgggcgacg
     6901 tacagcattt tgccgatgat gttatcgccc agcgcggcgt gcgccacggc cacttgcaat
     6961 gtttgccgaa agaagactaa cgccccagcg ccttgccggg ggcgcttcgc ttgcccggcc
     7021 tacgttcgca cgtcgtcgtt tgtaggccgg atgaggcgca gccgccatcc ggcaataatg
     7081 tttgcgccat cgtgccaatc gtttttctga agcgtaacag cgctatcagg aagaacacgc
     7141 cgcctatcgc cagcagggtc aggaactgcg gccagacaat acttaaacct gcgccgcgat
     7201 aaagaatagc ctgggcaagg ctgacaaaat gcgtcgttgg catggtcagc ataatatcct
     7261 gcaccgcctg cggcatactt tcgcgcggcg tggaaccgcc ggagagcatt tgtagcggca
     7321 acagcaccag aatcattaat aaccccagct gcggcatcga acgggcgatg gtgcccataa
     7381 aaatcccaat tgaagtggtg gcgaacaggc tcagcgccac gcccaacata aacaatggga
     7441 tcgatccttc aatcggtacg ccaagtacgc ctttcaccat cagcatcaaa gacaaaccgg
     7501 aaaccaccag cacgaccagc cccatcgacc acacttttgc catcatgatc tcaaagggcg
     7561 tgaccggcat cactaacaga tgctctaccg tgccatgttc tcgctcgcgg atcagcgccg
     7621 atccggtcag cactatcgcc agcatggtaa tgttgttgat aatcgccatc acgccgccaa
     7681 accacgccgg gtccagattc gggttaaagc gcatccgaat ttccagcgac accggctgaa
     7741 cgctatctcc ccgcgcgcgc cacaaagctg ttgacctcgc cgctaataat attctggata
     7801 taacaatcgt aaaggcgaag acgatcagcg ccagcatcgc tttgtcgccc agcagactgc
     7861 gcagttcttt gacgccgagg ttataaatat tacgtaatcc gcgcattacc cctcctgttt
     7921 tttcagcagc agaatgctca gacccatcac caccgggacg gcaatcagta acggcataaa
     7981 taacgaccag agatcggaca gatccaacgc tttggaaaac gtcccgcgcg cgatcgtcag
     8041 aaaatggctg gtcgggtaga tctcgccgat ccatcttccc ggtccttcca gcgaagccac
     8101 cggatcgatc atgccggaaa attgtgttgc cggaatgagg gtaataatcg acgtcccaaa
     8161 aatagcggcg atttggctct tcataaacgt ggagatcagc agccccagac cggtggcgat
     8221 gatgacgtaa agcagcgccg cgagggtaag cgtgagaaag ctgcctttca gcggcacgcc
     8281 gaacacaaag accgacagcg cgcacagtag caagaagttc agcataccca gcgcgatata
     8341 cggcagttgt ttacccagca aaaattcact gcgcgtcgtc ggcgttacgt acagattaat
     8401 catcggcccc agctctttct cccgcaccac gctcagggcg ctaagcattg acgggatcat
     8461 catgagcagc agcggaatga ccgccggaac gatagcgggc agacttttca catccgggtt
     8521 atagcgatag cgcgtttcaa tgttgagcag cccggtttgt ttaaccgggt tcggctgacg
     8581 acttgccgcc tcctgcagcc agctttggtg catcgcctga acgtacccct tcaccgtctc
     8641 ggcgcggctg ggcatggcgc catccaccca gacgccaatc tgcgctggcg taccgcgagc
     8701 aatatcgcgg ccaaaattag gcgggatctc aatggcaacc gccaactctc ccgaacgcat
     8761 ccgccggtca agctcgtcat agctggcgag cggcggctgt tcgataaaat agcgcgatcc
     8821 cgccagattg agcgaccatg cctggctgct gacggtttga tcgcggtcga gtacggcaaa
     8881 acgcaggttc tccacgtcca tactgatgcc atagcccata atcagcatca gaattaccgt
     8941 tcccagcagc gccagcgtcg agcgtaccgg atcgcggcgt agctccagcg cttcgcggcg
     9001 actgtagctg aacaaacgcc ggaagctcaa tccctgccgc gacggtttat ctgacgcggc
     9061 gggcgtctgg gatggcggta ttggggtttc aggcgccgct cccgcagctt cctgtagcca
     9121 ggaaataaac gccgcttcca gattggccgc gccccgctgt tgcaccaatt cctgcggcgt
     9181 accgctggcg agcactttac cggcgtgcat caatgacatt cggtcgcaac gttccgcttc
     9241 gttcataaaa tgggtcgaga taaaaatcgt cactttatcc tgacgcgaaa gatcgaccat
     9301 aagctgccag aacatatccc tggcgaccgg atcaacgccg gacgttggct catcaagaat
     9361 cagcatttcc gggcgatgga tcaccgctac cgccaacgat aaacgctggc ggataccgag
     9421 cggcaacgaa gcggggagcg tatcttccac ctccgttagc ataaagcgtt cgatcatctg
     9481 cgcaacgcgc gccgggatct ccgctggcgg aatatgaaac aggcgggcat gaagttccag
     9541 attctgccgc acggtgagtt cgttatagag cgaaaaagcc tgcgacatat acccgacccg
     9601 gcgacgggta tcgatgtcgt tcgggtctac cggctggcca aatagccagg cttggccttc
     9661 gctggcggga agcagaccgg tcagcatttt catggtggtc gatttgccgc agccgtttga
     9721 accgaggaag ccaaaaatct cgccgcgcgg aatgcggaaa ttaacatggt caaccgcgac
     9781 gaacttaccg aagcgcatgg tcagatcttt cgcctcaatg gcaatctctt cctgctcagc
     9841 gtgatacggc gggatcacca ctggcttatg cgcctggcgc tgcgcttctg gcaacagggc
     9901 gataaacgcc tgctccagcg tcgcgctatg ggtttttgcc cgcagttgct gcgcgctgcc
     9961 ggttgccagt atctcgcccg cattcatcgc caccagccag tcaaaacgct ccgcctcttc
    10021 catataggcc gttgcgacca acacgctcat attggtctgc cgttggcgga tactgtcgat
    10081 taagtcccag aactgagcgc gggagagcga gtccacgccg gtggtaggct catcaagaat
    10141 cagtaattcc gggtcatgaa tcagcgcaca gcacagcccc agcttttgtt tcatcccacc
    10201 ggacagcttc ccggcaggac gatcacgaaa cggcgccagg ccggtgctgt tcagcagctc
    10261 ggtaatacgc gcttcgcgtt cagctttgtc atgaccaaag agacgagcga aaaaatcgac
    10321 gttctcataa accgatagcg tgtgataaag gtttttcccc agcccctgcg gcatccaggc
    10381 gatgcgcgga cagacgtcgc ggcgatgttt cgcatcgcgc atatcgccgc ccaggacgat
    10441 aacgttccct tgctcaatca cccgcgcgcc agaaatcagc gacagcaggc tcgacttacc
    10501 caccccgtcc ggaccaatca gcccgaccat actacgggcg ggaatgtcca gcgtgatatt
    10561 gttcagcgcg accgtttttc cgtaatgctg gctcaccccc tcaagctgcg ccacgggagg
    10621 aacaggcacc agcgtcagcg acgtcattgc gacaacctca cgttcagatc gtcaggccag
    10681 ggcacgcgct catccagacg aacccaggcc attcccggca aaccggtttt gacatattcc
    10741 agatgctgtc gcagcagctc tggcggaata cgcgctttga cgcggaacat cagcttcagc
    10801 cgttcatcgt gggtttccac ggttttgggt gtgaactgcg ccacgctggc gacaaaactg
    10861 atggtcgccg gaatacgcag atccggcgcg gcgtccagca ccagtcgcgc gtcgccgccg
    10921 atcttcaaca accccgcctg ttcggtcggc aggaaaaatg tcatataaac atcgctgaga
    10981 tcgaccatgt tcaacacccg gccgccagcc gataacactt cgcccggctc cgcaacgcgg
    11041 tactgcacac gtccatcgcg cggcgctttt aattcgctgt cgtcgatgtc ggcgacaata
    11101 cgccgctcgg tcgcctgcgc cgcttccacg cgcgtttgcg cctggataat actggtacgc
    11161 gccgcctcaa tcgccgcttt tgccgcagat acctgcgctt tggcggtctc cagggcggcg
    11221 cgcgcgcttt ccgccgccgc gcgatcgtca tctaactgtt gtacagatac cgcgccacgc
    11281 tgcgacagcg aacgagaacg cacgtgacgt ttagagacgg agtccagctc agcttcccgc
    11341 tgtttgacga ccgactgcgc ggcgcgcatt tcactctggc gttgctccag caaggcacgg
    11401 gcggcggcaa ctgcgctctc ggcctcttta atctgcgcaa tcgcctccag ccgctgctcc
    11461 tgcaatacgc gggtatccat tttcgccagc acctcgccct gacgaacgaa ctgcccttcc
    11521 gaaacgagga tggtatcaat acgcccggca atcttagtgg caatatccac ttcggtggct
    11581 tcaattctgc cattgctggc ggcaaacccc tccggtattc ccgcagggcg cagcatccac
    11641 caggcgatcg cggccaccgc cacaagaatc cccgctcccc accacaccag atgacgcttc
    11701 attttgtcca taatcgaccc gccgtaatcc ctgttgccta accatgcgtg tcacaaagtc
    11761 cgccgggcgt gcgctcagcg ggggtttcca tccgggataa gaaggaatga aaaacaatgg
    11821 ccattgagcg agcgttaagg caacgcgcgc cgcgaaggaa gtgaatgacg aaaatgctgt
    11881 gaaaccgggt agtaatgttg tcatcatcag cgttcctggc cggaaatgaa acacgcatac
    11941 tcataactgc tgtctattga atactaacac ctggattcaa tatgtctatt cggttgtagc
    12001 acagatgttg cagacaaaaa atcgtgcccg tcaatctatt taccgaaggg gctggtaacg
    12061 aaagcatgcg tgattacccc tgctcaagtc gccgggcccg gctaaaaaac atggatacag
    12121 cccacggcat caaatattcg tacttctaat aaggaaacgc tcctgccgga ggtaaaacac
    12181 gataatattt tatccacttt cctgccccta ttctccgccc t
//
LOCUS       DAJVSD010000127        12142 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.127, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000127 DAJVSD010000000
VERSION     DAJVSD010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 12142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12142
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.127"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(42..836)
                     /gene="thyA"
                     /locus_tag="OQP62_002782"
     CDS             complement(42..836)
                     /gene="thyA"
                     /locus_tag="OQP62_002782"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HCS1722294.1"
                     /translation="MKQYLELIQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLLEGFPL
                     VTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWP
                     TPDGRHIDQIATVLSQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS
                     CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLDVGDFVWTGGDTHLYSNHMEQTHL
                     QLSREPRALPKLVIKRKPDSLFDYRFDDFEIEGYDPHPGIKAPVAI"
     gene            complement(843..1718)
                     /gene="lgt"
                     /locus_tag="OQP62_002783"
     CDS             complement(843..1718)
                     /gene="lgt"
                     /locus_tag="OQP62_002783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HCS1722295.1"
                     /translation="MTSSYLHFPDFDPVIFSIGPVALHWYGLMYLVGFVFAMWLAVRR
                     ANRPGSGWTKNEVENLLYAGFLGVFLGGRIGYVLFYNFPLFLDNPLYLFRVWDGGMSF
                     HGGLIGVILVMIIFARRTKRSFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPDF
                     RFAMLFPGSRAEDIALLPSHPQWQPIFDTYGVLPRHPSQLYELALEGVVLFIILNLFI
                     RKPRPMGAVSGLFLIGYGAFRIIVEFFRQPDAQFTGAWVQYISMGQILSIPMIIAGAI
                     MMVWAYRRRPQQHVS"
     gene            complement(1931..4177)
                     /gene="ptsP"
                     /locus_tag="OQP62_002784"
     CDS             complement(1931..4177)
                     /gene="ptsP"
                     /locus_tag="OQP62_002784"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HCS1722296.1"
                     /translation="MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLAD
                     HDRRCYYLMATRGLKKPRGRTVALAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSV
                     KEERFRAFLGVPIIQRRQLLGVLVVQQRELRQYDESEESFLVTLATQMAAILSQSQVT
                     ALFGQYRQTRIRALPAAPGVAIATGWQDATMPLMEQVYEASTLDTSLERERLTGALEE
                     AANEFRRYSKRFAAGAQKETAAIFDLYSHLLSDARLRRELFAEVDKGAVAEWAVKKII
                     EKFAEQFAALTDNYLKERAGDLRTLGQRLLFHLDDSVQGPNAWPERFILVADELSATT
                     LAELPQDRLAGVVVRDGAANSHAAIMVRALGIPTVMGADIQPSVLHRRTLVVDGYRGE
                     LLVDPEPVLIQEYQRLISEEIELSRLAEDDVNLPAQLKSGERIKVMLNAGLSPEHEEK
                     LGSRIDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNDKPVTLRTLDVGADKQL
                     PYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLSILLPMVTSIDEVD
                     EARRLIERAGREVEEMIGYAIPKPRIGIMLEVPSMVFMLPHLANRIDFISVGTNDLTQ
                     YILAVDRNNTRVASIYDSLHPAMLRALSMIAQEAEKHGLDLRLCGEMAGDPMCVAILI
                     GLGYRHLSMNGRSVARVKYLLRHIDFEDAQTLARRSLEAQMATEVRHQVAAFMERRGM
                     GGLIRGGL"
     gene            complement(4190..4720)
                     /gene="rppH"
                     /locus_tag="OQP62_002785"
     CDS             complement(4190..4720)
                     /gene="rppH"
                     /locus_tag="OQP62_002785"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001655775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HCS1722297.1"
                     /translation="MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGE
                     SAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLL
                     QLMSADAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMALQD
                     NPPKLQSAPAYRRKRG"
     gene            5403..6098
                     /gene="mutH"
                     /locus_tag="OQP62_002786"
     CDS             5403..6098
                     /gene="mutH"
                     /locus_tag="OQP62_002786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutH"
                     /protein_id="HCS1722298.1"
                     /translation="MSALCPLLTPPASEALLLAQARQLSGYTLGELAVMAGITTPKDL
                     KRDKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPLTG
                     NSGVTWETSHVRHKLKRVLWVPVEGDRSIPLAERRVGSPLLWSPSEEEDRQLRLDWEE
                     LMDMIVLGQVERITARHGEVLQLRPKAANARALTEAIGARGEPILTLPRGFYLKKNFT
                     QALLARHFLLQNP"
     gene            6280..6993
                     /locus_tag="OQP62_002787"
     CDS             6280..6993
                     /locus_tag="OQP62_002787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HCS1722299.1"
                     /translation="MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQ
                     RNHARRLGLAAAMVMRLALLASIAWVTRLTNPLFELFGEAISARDLILLLGGLFLIWK
                     ASKEIHESIEGEEEGLKTRVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA
                     VVIAVGVMMFAARPIGEFVDRHPSVKMLALSFLILVGFTLILESFDVHVPKGYIYFAM
                     FFSIAVESLNLLRNKKNPL"
     gene            7164..7382
                     /locus_tag="OQP62_002788"
     CDS             7164..7382
                     /locus_tag="OQP62_002788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="HCS1722300.1"
                     /translation="MKKWAVVISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPQVDD
                     DTGLVSYTDTQGNEMQINRDEVSQIIER"
     gene            7573..8613
                     /locus_tag="OQP62_002789"
     CDS             7573..8613
                     /locus_tag="OQP62_002789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(H)-dependent aldo-keto reductase"
                     /protein_id="HCS1722301.1"
                     /translation="MHYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYTIANGI
                     NLIDAAEMYPVPPRPETQGLTESYIGNWLAKRGNREKLIIASKVSGPARNNDQGIRPH
                     QALDRKNIREALHDSLTRLQTDYLDLYQVHWPQRPTNCFGKLGYNWADSMPVVSLLET
                     LDALSEFQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSYEVG
                     LAEVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQAQKAVAA
                     YVDIAKRHNLDPAQMALAFVRRQPFVASTLLGATTMAQLKTNVESLHLTLSEEVLAEI
                     EAVHQVYTYPAP"
     gene            complement(8700..9902)
                     /gene="lplT"
                     /locus_tag="OQP62_002790"
     CDS             complement(8700..9902)
                     /gene="lplT"
                     /locus_tag="OQP62_002790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid transporter LplT"
                     /protein_id="HCS1722302.1"
                     /translation="MSESVRTNTSIWSKGMLSVIVAQFLSAFGDNALLFATLALLKAQ
                     FYPDWSQPVLQMVFVGAYILFAPFVGQIADSFAKGRVMMVANGLKLAGAAGICLGVNP
                     FVGYTLVGIGAAAYSPAKYGILGELTTGDKLVKANGLMEASTIAAILLGSVAGGVLAD
                     WHVIAALVACALAYAGAVAANLFIPKLVAARPGQSWRLSAMTRSFFCACVVLWRNGET
                     RFSLVGTGLFWGAGVTLRFLLVLWVPVALGITDNATPTYLNAMVAVGIVVGAGAAAKL
                     VTLETVSRCMPAGILIGVVVAIFSLQHALLPAYALLLLIGMLGGFFVVPLNALLQERG
                     KKSVGAGNAIAVQNLGENSAMLLMLGLYSLAVLVGVPAVAIGIGFGVLFALAIAALWI
                     WQRRQASY"
     gene            complement(9895..12054)
                     /gene="aas"
                     /locus_tag="OQP62_002791"
     CDS             complement(9895..12054)
                     /gene="aas"
                     /locus_tag="OQP62_002791"
                     /EC_number="2.3.1.40"
                     /EC_number="6.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acyl-ACP--phospholipid
                     O-acyltransferase/long-chain-fatty-acid--ACP ligase"
                     /protein_id="HCS1722303.1"
                     /translation="MLFGFFRNLFRVLYRVRVTGDVRALQGNRVLIAPNHVSFIDGML
                     LALFLPVRPVFAVYTSISQQWYMRWLTPLIDFVPLDPTKPMSIKHLVRLVEQGRPVVI
                     FPEGRISVTGSLMKIYDGAGFVAAKSGATVIPLRIDGAELTPFSRLKGLVKRRLFPRI
                     QLHILPPTQIPMPEAPRARDRRKIAGEMLHQIMMEARMAVRPRETLYESLLAAQYRYG
                     AGKNCIEDINFTPDTYRKLLTKTLFVGRILEKYSVEGEKIGLMLPNAAISAAVIFGAV
                     SRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLE
                     DLKADVTPADKLWIFAHLLAPRLAQVKQQPEDAAIILFTSGSEGHPKGVVHSHKSILA
                     NVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPEL
                     VYDRNCTVLFGTSTFLGNYARFANPYDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL
                     EGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLAVPGIENGGRLQLKGPNIMNG
                     YLRVEKPGVLEVPSAENARGETERGWYDTGDIVRFDENGFVQIQGRAKRFAKIAGEMV
                     SLEMVEQLALGVSAEKMHATAIKSDASKGEALVLFTTDSELTREKLQHYAREHGIPEL
                     AVPRDIRYLKQLPLLGSGKPDFVTLKSWVDAPEQHHE"
BASE COUNT         2953 a         3426 c         3092 g         2671 t
ORIGIN      
        1 ccgacgcgcg atggcgtcgg ttatggcagg atcgtcagcg cttagatagc gaccggcgct
       61 ttaataccgg ggtgcggatc atagccttca atttcgaaat catcgaaccg gtagtcaaaa
      121 agcgaatcgg gtttacgctt aatgaccaat ttcggcagcg cgcgcggttc acggcttaat
      181 tgcaggtgcg tctgctccat atggttgctg tacaggtgcg tgtcgccgcc ggtccagaca
      241 aaatcgccga cgtccaggtc gcactgttgc gccatcatat gcaccagtaa cgcgtagctg
      301 gcaatgttga acggcagacc gaggaacaca tcgcaggagc gctgataaag ctgacaggag
      361 agttttccat ctgcgacata aaactggaaa aaggcgtgac acggcgccag cgccatctta
      421 tccagctcgc cgacgttcca cgcagaaacg ataatacgac gagagtccgg gtcgttttta
      481 agctggctca agaccgtggc gatctgatcg atatggcggc catccggtgt tggccatgca
      541 cgccactgct taccataaac cgggcctaaa tcgccgttct catcggccca ttcgtcccag
      601 atggtgacat tattttcgtg taggtaagcg atgttggtat cgccctgcaa aaaccatagc
      661 agttcgtgaa taattgaacg taaatggcag cgtttcgtcg tcaccagagg aaagccttcc
      721 agcaggttaa aacgcatctg atggccaaaa atggaaagcg tgccggtgcc ggtacggtcg
      781 tttttctgtg tgccttcatc cagcactttt tgtatcagtt ctaaatactg tttcatggtt
      841 cctcaggaaa cgtgttgctg cgggcggcgg cgatatgccc aaaccatcat gatcgcgcca
      901 gcgataatca tcgggataga gagaatctgc cccatgctga tgtactgtac ccacgcgccg
      961 gtaaattgcg cgtccggctg gcggaagaat tcaacaatga tacgaaacgc gccatagcca
     1021 atcaggaata atccggagac tgcgcccatc ggacgcggtt tgcgaataaa gagattaagg
     1081 atgataaaca gcaccacgcc ttctaatgcc agctcataca actgggaagg gtggcgtggc
     1141 aatacgccgt aggtatcaaa aataggctgc cattgcggat gtgacggcag cagcgcaata
     1201 tcttccgcgc gtgagccagg aaagagcatg gcaaaccgga agtcaggatc gacgcgcccc
     1261 cacaattcac cgttgataaa gttgcccaga cgcccggcgc ccaggccgaa cggaattaac
     1321 ggcgcaataa aatcagacac ctgaaagaac gagcgcttcg tgcgcctggc gaagataatc
     1381 atcaccagta tcacgccgat aagcccgccg tggaaggaca tgccgccgtc ccagacgcgg
     1441 aataaataga gcgggttatc cagaaacaga gggaagttat aaaacaggac atagccaata
     1501 cgtcccccca ggaagacccc caggaaacct gcatagagta aattttcaac ttcgtttttg
     1561 gtccaaccgc ttcccggacg gttagcgcga cgcaccgcca accacatcgc gaaaacgaac
     1621 cccaccagat acatcaagcc ataccagtga agcgcgacgg gcccaattga gaaaatgacc
     1681 ggatcaaagt ccggaaaatg cagatagcta ctggtcatct gtcaccacaa tttcttgtta
     1741 tttcgctgaa gagatagcga ttgataagcg cgcctgcgcg ttgcagacgc tccaaaggtg
     1801 cgaataatag cacaagggtt aaaagcgaga tgccgattac cgttaaaaga tatgtatacg
     1861 cattgtcttt catcttgcag gcgtgttgtc tgcgccgtga atccacagtc actttttccc
     1921 gctccagtcg ttacaaccct ccgcgaatca atccccccat cccgcggcgc tccataaacg
     1981 ccgccacctg atgacgcact tcggtcgcca tctgcgcctc aaggctgcgt ctggcaaggg
     2041 tttgcgcgtc ttcaaaatcg atatgccgca gcagatattt cacacgcgct accgaacggc
     2101 cattcatcga aagatggcga tatcccagac cgataagaat cgccacgcac atcggatcgc
     2161 ccgccatctc gccgcacaag cgaagatcga gaccatgttt ttcggcttcc tgcgcgatca
     2221 tggacagtgc gcgcagcata gccggatgca aactgtcata aatactggcc acgcgggtat
     2281 tgttgcgatc taccgccagg atatattgcg ttaaatcgtt ggtgccgacc gagataaagt
     2341 cgatccggtt agccagatgc ggcagcataa ataccattga tggtacttcc agcataatgc
     2401 cgatacgcgg tttcgggatc gcatagccga tcatctcctc gacctcgcgc ccggcgcgtt
     2461 cgatcagacg ccgcgcttca tcgacttcat caatactggt gaccatcggc aacaaaatgc
     2521 tgaggttgcc agtcgccgca ttggcacgca gcatcgcgcg gacctggatc aaaaagatct
     2581 ccggctgatc cagcgtaatg cggatcccgc gccagcccag acacgggttc tcctcgctga
     2641 tcggcatata gggcagttgc ttatccgctc ccacatccag ggtccgcagc gtcaccggtt
     2701 tatcgttaaa catttgcagc atcccttgat actgcgccac ctgctcttct tccgagggaa
     2761 acccgctttg cagcatgaag ggaatttcag tacggtacag gccgataccg tcgatccgac
     2821 tgcctaactt ttcctcatgc tcggggctga gcccggcatt cagcatcact ttgatacgct
     2881 cgccgctttt cagttgggcg ggaagattga cgtcgtcctc cgccagacga ctgagttcta
     2941 tctcttcact aatgagccgc tgatattcct gaataagcac gggttcagga tcgaccagta
     3001 attcaccgcg atagccatcc accaccaacg tacggcgatg tagcaccgaa ggctggatat
     3061 ccgcgcccat gacggtgggg ataccgagcg cgcgcaccat aatcgccgca tgcgagtttg
     3121 ccgcgccgtc gcgcaccaca acgcccgcca gcctgtcctg cggcagctcc gccagggtgg
     3181 tcgccgacag ctcatccgcg accagaataa aacgttccgg ccaggcgttt ggcccctgaa
     3241 ctgaatcatc aagatggaat aacagccgct gccccagcgt gcgtaagtct cccgcacgtt
     3301 ctttgaggta gttatcggtt agcgccgcaa attgctcggc aaatttttcg atgatttttt
     3361 taacggccca ctccgcaaca gcgcctttgt cgacctcggc gaagagttcg cgacgcagtc
     3421 tggcgtctga aagcaggtgt gagtacagat cgaaaatggc tgccgtctct ttttgtgcgc
     3481 cggcggcaaa gcgtttgctg tatcgtcgga attcgttcgc cgcctcttcc agcgcgccgg
     3541 tcaatcgttc gcgttcaaga gaggtatcca gcgtagacgc ttcgtaaacc tgttccatca
     3601 gcggcatggt cgcgtcttgc cagcccgttg cgatagccac gcccggcgcc gcaggaagcg
     3661 cgcgaattcg cgtctgccgg tattgcccga atagcgctgt gacctgcgac tgtgacagga
     3721 tagccgccat ctgcgtagcg agcgtgacga ggaaagactc ttcgctttca tcgtactggc
     3781 gcaattcgcg ctgctgcacg accagcacgc cgagaagttg gcgacgctga atgatcggca
     3841 caccgagaaa cgcgcgaaaa cgctcctctt ttaccgaagg aatgtattta aagctgggat
     3901 gtttttgcgc atcggcaagg ttaatgggtt ccgccagcct gcccaccaga ccgacgatcc
     3961 cctcatcaaa cgcaagcgca acggttcgac cacgcggttt tttcaacccc cgcgtcgcca
     4021 tcaggtaata acagcgtcgg tcatgatcgg ccaggtaaac cgagcaaacc tctgtatcca
     4081 tcgcaagaca gatatccgtg accagaatat tcagcgcctc gttcagacgc ggcgcactgg
     4141 ccactttttc gactatttcg cgcaggcgag tgagcataat ttgcgtggct taacctcttt
     4201 tacgtcgata agcaggcgcg ctttgtagct tagggggatt atcctgaagc gccatgacaa
     4261 cacttgcaaa ctctttcatt accctgcggt agacatcgcg tttaaatgac accacttgtc
     4321 gaaccggata ccagtaactt acccagcgcc agccgtcaaa ctccggcgta ctgctggttt
     4381 gcatattgat ttcggcgtcg gcgctcatta actgcaaaag aaaccacttt tgtttctggc
     4441 cgatacatac cggctttgtg tcccaacgca ccaaacgttt tggtaacttg taacgcaacc
     4501 agttgcgagt agaagcaagg atccgcacat ctttacggct taacccaact tcttcaaaca
     4561 gttcccggta catcgcctgt tctgccgact cccctggatt tatcccgccc tgcgggaact
     4621 gccaggagtg ctgaccaaat cgccgggccc acatcacctg cccctgacga ttacaaatta
     4681 cgatacctac atttgggcgg tagccatcgt catcaatcac cggactacct caacataaac
     4741 cttatatatg aacgattgtt tcatactcca gtgaggcggt aaaccactct gtaatagtga
     4801 cacagcctaa taacaattga ataactcaca gtaaatagcc gagttataaa cagatgatga
     4861 cgcccttgcg ccattttatt caccttttct gtggatatag ttgtgaagaa gtatggaatt
     4921 accacgggaa aacccagaac agtctgaatt cctcatactg aaaacagtaa aaatagtgcc
     4981 ttatattcat tgtgttatag acaaatctta catgccacct tcataaagcg tgaccagcat
     5041 cacatctaag atccttatgc tgatgaaaga tcaaccagcg tcggttttat ccacagattg
     5101 tgccaataac ttacgcacta tttgtctgaa ttttcgattt tcgtcgcacg tcaaggctgt
     5161 aaatggaaac agtagtggtg gttttacaca gttatcccaa ctttctgtgg ataacatagt
     5221 gtaagatcct gtttattgtt agtgaccaga attggaaaac ccgcttcagc gttgcgcaac
     5281 acgaagaaac aacacaaaaa aggcaataaa aatcagtcta ttgaatataa gacacagaaa
     5341 aagataaact ctgcccatac ggtataaaaa cactgctcat tttttgacct aaggtaattg
     5401 tcatgtccgc tctttgtccg ctactgactc cgcctgcttc ggaagcattg ctgttagccc
     5461 aggcgcggca gctttccggc tatacgttag gcgagctggc ggtgatggcc ggcattacca
     5521 cgcctaaaga tttgaagcga gacaaaggct ggatcggcgt cttgctggag atctggctcg
     5581 gcgccagcgc cgggagcaag ccggagcagg atttcgccgc gttaggcgta gaactgaaaa
     5641 ctatcccggt ggatagtctg ggtcgtcctc tggaaacaac ctttgtttgc gtggcgccgt
     5701 taaccggtaa cagcggcgtg acctgggaga caagtcacgt acggcataaa ttgaagcgcg
     5761 tgctatgggt gccggtcgaa ggcgatcgca gcataccgtt agccgaacgc cgcgtaggtt
     5821 cgccgctact ctggagtccg agtgaagaag aggacaggca gctacgcctc gactgggaag
     5881 agctgatgga catgatagtg ctgggccagg tggaacgcat taccgcccgc catggcgaag
     5941 tcttgcaact gcgacccaaa gccgccaatg ccagggcgct caccgaggct atcggcgcgc
     6001 gcggggaacc tattttgacg ctaccgcgtg gattttatct gaaaaaaaat tttacgcagg
     6061 cgctgctggc tcgccatttt ttattgcaga atccgtaacg tccattacac gcaaatgcgc
     6121 ctccgctatg gctacgcgtc gggccgacgc cggataaacg taagcgtatt gtcgccgcta
     6181 ttttacaccg ttcctggttg cgcaaattca gcctgggctt tcgcccgtca ctcgacgggc
     6241 ctataattac cgcttctttt tttggcagga ctttgttcga tgttatttgc atggataacc
     6301 gatcctaatg cctggctggc gctcggtacg ctgacgctgc tggagattgt acttgggatc
     6361 gacaacatta tttttctttc tctggtggta gcaaaacttc ctacggcgca acggaaccac
     6421 gcacggcggc ttgggttggc ggcggcgatg gttatgcgcc tggcgctgct ggcgtcaatc
     6481 gcctgggtca ctcggctgac taatccgctg tttgagcttt tcggcgaagc gatttccgcc
     6541 cgcgatctca ttctgttact gggtgggtta tttttaatct ggaaagccag caaggagatc
     6601 catgagtcca tcgaaggcga agaagaaggg ttaaaaaccc gggtttcttc tttcctgggc
     6661 gcaatagtgc agattatgct gctggatatt attttcagcc ttgattcagt tatcacagcg
     6721 gttggcctct ccgatcatct gtttattatg atggcggcag tcgttattgc cgtgggtgtc
     6781 atgatgtttg cggcacggcc catcggcgag tttgtcgatc gtcatccgtc ggtaaaaatg
     6841 ctggcgctct cctttctgat cctggttggc tttaccctga ttctggaaag tttcgacgtt
     6901 cacgttccga aagggtatat ctatttcgcc atgttcttct ctatcgcagt agagagcctg
     6961 aacctgttgc gtaataaaaa gaatccgctg taatcctgtc tcgctccccc gccgggggag
     7021 cgaatactca ctttatttcc tttcttctca cagattaaga ttttgctgct tccgacatgc
     7081 agagctgcgc gttattacta gactattatc agacatatga ttaacagact attatcagat
     7141 gcaggctacg tgaggaaaaa cggatgaaaa agtgggcagt tgtaatttcc gcagtagggt
     7201 tggcttttgc ggtatccgga tgcagcagcg attatgtaat ggcgacgaaa gatggtcgta
     7261 tgatcctgac cgatggaaaa ccgcaagttg acgatgatac cggtctggtc agctataccg
     7321 atacacaggg aaacgagatg caaatcaacc gtgacgaagt gtctcaaatc atcgaacgtt
     7381 aagcggtggc ctgtgatcga ggtcagcgtt ctgcaagcct tcaggctgcg tcccgtaacg
     7441 gtgcgtggcg accacgcccg gtaacaatta cgccgtgcag cctgcaattt tactttccct
     7501 tttgccttcc ctctgccatt tttattgtcc tttgtcggga atttctgact tcataataaa
     7561 aaggaaacgg ctatgcacta tcaccgtata ccccacagct cgctcgaagt aagtacgcta
     7621 gggctgggca caatgacatt tggtgaacaa aacagcgaag ccgacgctca cgcacagctc
     7681 gactatacca tcgcaaatgg cattaacctt atcgacgccg ccgagatgta tccggtaccg
     7741 ccgcgcccgg aaacacaagg gctgacggag tcctatatcg gtaactggct cgccaaacgc
     7801 ggcaaccgtg aaaaactgat catcgccagc aaagttagcg gaccggcacg taataatgat
     7861 caaggcatcc ggcctcatca ggcgctggat cgtaaaaata ttcgcgaagc gctacacgac
     7921 agtttgaccc ggttgcagac cgactatctg gatttgtatc aggtgcactg gccgcagcgc
     7981 cccactaact gcttcggtaa actcggctat aactgggcgg actccatgcc agtagtaagt
     8041 ctgctggaga cgttagacgc gctaagtgag tttcagcgag cgggtaagat tcgttatatt
     8101 ggcgtttcaa atgagacagc gtttggcgtt atgcgctatc tgcatctggc ggaaaaacat
     8161 gacctgccgc gtattgtcac tatccagaac ccctatagcc tgttaaaccg cagctacgag
     8221 gtcggactgg cggaagtcag ccagtatgaa ggtgttgaat tgctcgccta ttcctgtctg
     8281 gcgtttggca cattaaccgg taaatacctg aacggggcca aacccgcagg cgcgcggaat
     8341 accttgttca gccgcttcac acgttacagc ggcgaacagg cacaaaaagc cgttgccgcc
     8401 tacgtcgata tcgcgaagcg tcacaatctt gatccggcgc agatggcgct ggcctttgtt
     8461 cgccgccagc cgtttgtcgc cagtacgtta ctgggcgcaa ccacgatggc gcagctcaag
     8521 acgaatgtgg aaagtctgca tctgacgtta agcgaagagg tcctggcgga gatagaggcg
     8581 gtgcatcagg tttataccta cccggcgccg tgatggtcag tgcccggtgg cgctacgctt
     8641 ccgggcttac agagacaatg taagccggat aacgcgcact cgccgcccgg catattcact
     8701 cagtatgatg cctgccggcg ctgccagatc cacagcgccg cgatcgccag cgcgaacagc
     8761 acgccaaagc cgatacctat cgccactgcc ggaacgccaa ccagcaccgc cagcgagtac
     8821 agtcccagca ttaatagcat ggcgctattc tcgcccagat tttgtacggc aatggcattc
     8881 ccggcaccaa cgctcttctt accgcgctcc tggagcaaag cgttgagcgg caccacaaaa
     8941 aagccgccca gcatacctat caacaacaac aaggcataag caggcagcaa tgcgtgctgt
     9001 aatgagaaga tcgcaaccac aacgccaatc aaaatcccag cgggcataca gcgcgatacg
     9061 gtctccagcg tcaccagttt tgccgccgca cccgcgccga ccacaatgcc taccgccacc
     9121 atggcgttca ggtaagtcgg cgtggcgtta tccgtaatgc ccagcgccac cggcacccac
     9181 agcaccagca gaaaacgcag cgtcacgcct gcgccccaga atagcccggt ccccaccagc
     9241 gaaaaacgcg tttcaccgtt acgccaaagg acaacgcaag cgcagaagaa gctacgcgtc
     9301 atcgccgaca accgccagga ttgtcctgga cgcgccgcca caagcttcgg gataaacagg
     9361 ttcgccgcca ctgcgccagc gtaggccaac gcgcaggcaa ccagcgcggc gatgacatgc
     9421 cagtcggcca atacgccgcc cgcgacggaa ccgagcaaaa tcgccgcaat cgtagaggct
     9481 tccatcaggc cattggcttt caccagctta tcgcccgtcg tcagttcgcc cagaataccg
     9541 tatttcgccg gagaataagc cgccgcgcca atcccgacca acgtataacc gacaaaagga
     9601 tttacgccga ggcagatacc tgccgctccc gccagtttaa gaccattggc gaccatcatc
     9661 acccggcctt tggcaaagct gtccgctatc tggccgacaa acggcgcaaa aagaatgtaa
     9721 gcgcccacaa acaccatttg caaaacaggc tggctccagt ccgggtaaaa ctgagctttc
     9781 agcagtgcca gcgtcgcgaa cagcagcgca ttatcgccaa aagccgagag aaactgcgcg
     9841 acaattaccg acagcatccc tttcgaccag atggaggtgt tagtacgtac tgactcactc
     9901 atgatgttgt tccggcgcat ccacccaact tttcagcgtc acaaaatcgg gtttcccgct
     9961 gccaagcaag ggaagctgtt tcagataacg gatatcacgc gggacggcaa gttccggaat
    10021 accgtgttca cgggcatagt gctgtaactt ttctcgggtg agttcgctgt cagtcgtaaa
    10081 cagtaccagc gcttcacctt tgctggcatc gcttttaatg gcggtagcgt gcattttctc
    10141 cgccgaaacg ccaagcgcca gttgctcgac catctccagc gagaccattt cgccagcaat
    10201 tttcgcaaag cgtttcgcgc gcccctgaat ctgcacaaaa ccattttcat cgaagcgtac
    10261 aatatcgccc gtgtcgtacc acccgcgctc ggtttcgcct ctggcgtttt ccgccgacgg
    10321 cacctccagc acgcccggtt tttccacgcg cagatagcca ttcatgatat tcggcccttt
    10381 cagctgtagc cgaccgccgt tttcaatacc gggcaccgcc agcagacgcg cgtccatgcc
    10441 aggcagaatg cggccaacag tgccaggctt agccgccatc ggcacgttaa tcgagactac
    10501 tggcgcgcat tccgttaccc cgtagccctc aagaatgcgc agaccgaatt tatcctgcca
    10561 cagttgtttg gtgctctcct gaagtttttc cgcaccggcc accacatagc gcaggcgata
    10621 aaaatcatac ggattggcaa agcgcgcata gttgccgagg aaggttgatg taccaaacag
    10681 cacggtacag ttacggtcat agaccagttc cggcacaatg cggtagtgca gcggacttgg
    10741 ataaagaaac acttccgcgc cggtcaacaa cggcgtaaac aggcccaccg tcaaaccgaa
    10801 cgagtgaaag agcggcagcg ccgacataaa acgatcattg gcggtgaaat ccgcaatcgt
    10861 ttttatctgc tcgacgttcg ccagaatact tttatggctg tgcaccaccc ctttcgggtg
    10921 cccttccgag ccggaggtaa aaagaataat cgccgcgtct tccggctgct gttttacctg
    10981 cgccagtcgc ggcgccagga ggtgggcaaa aatccacagc ttgtcggcgg gtgtgacgtc
    11041 cgcttttaaa tcttccaggt aaacccagcg aacctgcgtt agctgctccg gcaggtgcca
    11101 caatttacct ttatcgagga actggcggga ggtaaaaatc gttttaattt ccgccgcggt
    11161 aatcgcgctg gtcagccctt ttacccccgc cgtgtagttc atcatggccg gaatgcggcg
    11221 acgagaaacc gcgccgaaaa tcaccgccgc gctgatggcg gcattcggca gcattaaacc
    11281 gattttctcg ccctcaacgc tgtacttttc cagaatccgg ccaacaaaaa gcgtcttggt
    11341 cagtaactta cgatacgtat ccggcgtaaa gttaatgtcc tcaatacagt ttttacccgc
    11401 gccgtaacga tattgcgccg ccagcaacga ttcgtataac gtctcgcgcg ggcgcactgc
    11461 catacgcgct tccatcatga tctggtgcag catctcaccc gctatcttac gtctgtcgcg
    11521 cgcgcgcggc gcttccggca tcggtatttg cgtcggcggt aaaatatgaa gctgaatgcg
    11581 ggggaataag cgccgtttaa ccagaccttt caggcgactg aaaggggtaa gctccgcgcc
    11641 gtcaatgcgg agcggaatga cggttgcgcc cgattttgcc gccacaaagc ctgcgccgtc
    11701 ataaattttc atcagcgagc cggtcacgga aatccgccct tccgggaaaa tcaccactgg
    11761 acgcccctgc tccaccagac gcaccaggtg tttaatggac atgggtttag tgggatcgag
    11821 cggtacaaaa tcgatcagcg gcgttaacca gcgcatatac cattgctggc tgatggaggt
    11881 atataccgca aagacaggcc gtaccggcaa aaacagcgcc agtagcatac catcgataaa
    11941 tgaaacgtga ttgggggcaa ttaagacccg gttcccctgt agcgcccgga catcgccagt
    12001 gacgcgcaca cgataaagca cgcgaaacag gttacggaaa aatccaaaca gcatttcaac
    12061 tccctttggc cgacaattcg ctaaaacatg aattgtggca gattacacga gttgcgtaac
    12121 aggagcgata gcaaaatagg tt
//
LOCUS       DAJVSD010000128        11909 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.128, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000128 DAJVSD010000000
VERSION     DAJVSD010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11909)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11909)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11909
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.128"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(2..517)
                     /gene="luxS"
                     /locus_tag="OQP62_002792"
     CDS             complement(2..517)
                     /gene="luxS"
                     /locus_tag="OQP62_002792"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008458247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HCS1722304.1"
                     /translation="MPLLDSFAVDHTRMQAPAVRVAKTMNTPHGDAITVFDLRFCIPN
                     KEVMPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVAD
                     AWKAAMADVLKVQDQNQIPELNVYQCGTYQMHSLSEAQDIARHILERDVRVNSNKELA
                     LPKEKLQELHI"
     gene            complement(667..2223)
                     /gene="gshA"
                     /locus_tag="OQP62_002793"
     CDS             complement(667..2223)
                     /gene="gshA"
                     /locus_tag="OQP62_002793"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HCS1722305.1"
                     /translation="MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTVH
                     PEALGSALTHKWITTDFAEALLEFITPVDGDIQHMLTFMRDLHRYTARKLGDERMWPL
                     SMPCYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFW
                     QAKCGVTEGEAAKEKISAGYFRLIRNYYRFGWVIPYLFGASPAICSSFLQGKPTTLPF
                     EKTDCGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLHEYVAGLKRAIKTPSEEYAR
                     IGVEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDI
                     NPFSPIGVDEQQVRFLDLFMVWCVLADAPEMSSDELLCTRTNWNRVILEGRKPGLTLG
                     IGCETAQFPLPKVGKDLFRDLKRVAQTLDSIHGGEEYQKVCDELVACFDNPELTFSAR
                     ILRSMIDEGIGGTGKAFGEAYRNLLREEPLEILQEEEFIAERDASVRRQQEIEAADTE
                     PFAAWLAKHA"
     gene            complement(2300..2725)
                     /locus_tag="OQP62_002794"
     CDS             complement(2300..2725)
                     /locus_tag="OQP62_002794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1722306.1"
                     /translation="MSDGLSLLSLFASSFLSATLLPGNSEVVLVAMLVSGVSHPWVLV
                     LTATMGNSLGGVTNVILGRFFPLRKTSRWQEKATGWLKRYGAATLLLSWMPVIGDLLC
                     LLAGWMRIPWGRTIFFLCLGKALRYVALAAATVQGMMWW"
     gene            complement(2722..3288)
                     /gene="yqaB"
                     /locus_tag="OQP62_002795"
     CDS             complement(2722..3288)
                     /gene="yqaB"
                     /locus_tag="OQP62_002795"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-1-phosphate/6-phosphogluconate
                     phosphatase"
                     /protein_id="HCS1722307.1"
                     /translation="MYARYAGLIFDMDGTLLDTEPTHRKAWREVLGRYGLRFDEQAMV
                     ALNGSPTWLIAQSIIELNHADLDPLSLAREKTDAVKSILLDCVEPLPLVEVVKAWHGR
                     RPMSVGTGSESAIAEALLAHLGLRRYFDAVVAADHVQHHKPAPDTFLLCAQRMGVMPT
                     QCVVFEDADFGLQAARAAGMDAVDVRLL"
     gene            complement(3659..3735)
                     /locus_tag="OQP62_002796"
     tRNA            complement(3659..3735)
                     /locus_tag="OQP62_002796"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3699..3701),aa:Arg,seq:acg)
     gene            complement(3932..4008)
                     /locus_tag="OQP62_002797"
     tRNA            complement(3932..4008)
                     /locus_tag="OQP62_002797"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3972..3974),aa:Arg,seq:acg)
     gene            complement(4071..4147)
                     /locus_tag="OQP62_002798"
     tRNA            complement(4071..4147)
                     /locus_tag="OQP62_002798"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4111..4113),aa:Arg,seq:acg)
     gene            complement(4210..4287)
                     /locus_tag="OQP62_002799"
     tRNA            complement(4210..4287)
                     /locus_tag="OQP62_002799"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4250..4252),aa:Arg,seq:acg)
     gene            complement(4291..4383)
                     /locus_tag="OQP62_002800"
     tRNA            complement(4291..4383)
                     /locus_tag="OQP62_002800"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4347..4349),aa:Ser,seq:gct)
     gene            complement(4687..4872)
                     /gene="csrA"
                     /locus_tag="OQP62_002801"
     CDS             complement(4687..4872)
                     /gene="csrA"
                     /locus_tag="OQP62_002801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HCS1722308.1"
                     /translation="MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHR
                     EEIYQRIQAEKSQQSSY"
     gene            complement(5107..7737)
                     /gene="alaS"
                     /locus_tag="OQP62_002802"
     CDS             complement(5107..7737)
                     /gene="alaS"
                     /locus_tag="OQP62_002802"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HCS1722309.1"
                     /translation="MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGM
                     NQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDY
                     FKHDAIQFAWELLTGENWFALPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDN
                     KGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQ
                     FNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIEAVAKVTGSTDL
                     GNKSLRVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKL
                     VGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLQGDTLDG
                     ETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREASGFGADYNAMI
                     RVDSASEFKGYDHLELNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGD
                     KGELKGAGFTFAVDDTQKYGQAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSA
                     THLMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNL
                     PIETNIMDLDAAKAKGAMALFGEKYDERVRVLSMGDFSTELCGGTHASRTGDIGLFRI
                     ISESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTR
                     QLEKELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLG
                     STVIVLATVVEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQAGGTD
                     AAALPAALASVQGWVSAKLQ"
     gene            complement(7973..8473)
                     /gene="recX"
                     /locus_tag="OQP62_002803"
     CDS             complement(7973..8473)
                     /gene="recX"
                     /locus_tag="OQP62_002803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HCS1722310.1"
                     /translation="MSEPTSRRPAYARLLDRAVRILAVRDHSEQELRRKLSAPVMGKN
                     GPEEIDATADDYERVIAWCHEHHYLDDERFVMRFIASRSRKGYGPARIRQELNQKGIS
                     RESTEKAMRECEIDWSEMAREQAVRKYGEPLPSNFSEKVKVQRFLLYRGYLMDDIQQI
                     WRNFAD"
     gene            complement(8590..9651)
                     /gene="recA"
                     /locus_tag="OQP62_002804"
     CDS             complement(8590..9651)
                     /gene="recA"
                     /locus_tag="OQP62_002804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HCS1722311.1"
                     /translation="MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTG
                     SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP
                     VYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
                     GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF
                     YASVRLDIRRIGAVKEGDNVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELV
                     DLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAKEIEKRVRELLLSNQNA
                     TPDFAVDDSEGVAETNEDF"
     gene            complement(9736..10233)
                     /gene="pncC"
                     /locus_tag="OQP62_002805"
     CDS             complement(9736..10233)
                     /gene="pncC"
                     /locus_tag="OQP62_002805"
                     /EC_number="3.5.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide amidase"
                     /protein_id="HCS1722312.1"
                     /translation="MTDSELMRLSEQVGLALKARGATVTTAESCTGGWLAKAITDIAG
                     SSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSESVVVEMAIGALKAARADFAVAI
                     SGIAGPDGGSEEKPVGTVWFAFASVSGEGITRRECFSGDRESVRRQATTYALQTLWQQ
                     FLQNT"
     gene            complement(10699..11778)
                     /gene="mltB"
                     /locus_tag="OQP62_002806"
     CDS             complement(10699..11778)
                     /gene="mltB"
                     /locus_tag="OQP62_002806"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase B"
                     /protein_id="HCS1722313.1"
                     /translation="MFKRRYVALLPLCVLLAACSSTPKSSETQATTGTPSGGFLLEPQ
                     HNVMQMGGDFANNPNAQQFIDKMVSKHGFDRQQLQEILSQSKRLDYVLRLMDRQAPTT
                     QPPAGPNGAWLRYRKQFITPDNVQNGVAFWNQYEDALNRAWQVYGVPPEIIVGIIGVE
                     TRWGRIMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGA
                     MGYGQFMPSSYKEYAVDFNGDGHINLWDPVDAIGSVANYFKAHGWVKGDMVAVPASGQ
                     APGLANGFKTKYSISQLAAAGLTPQQSLGNHQEASLLRLDIGTGYQYWYGLPNFYTIT
                     RYNHSTHYAMAVWQLGQAVALARVR"
BASE COUNT         2790 a         3392 c         2899 g         2828 t
ORIGIN      
        1 actaaatatg caattcctgc agtttttctt tcggcagcgc cagctcttta ttgctgttca
       61 cgcgcacatc acgctccaga atatgacggg caatgtcctg cgcttcactg agcgagtgca
      121 tctgatacgt accgcactgg taaacgttca gctccgggat ctggttttga tcctgcactt
      181 tcagcacatc cgccatcgcc gctttccaag cgtcggcaac acgctgctcg tccggcgtgc
      241 caatcaggct catgtaaaag ccggtgcggc agcccatcgg cgagatatcg ataatctcaa
      301 cgccgttacc gttgaggtgg tcgcgcataa agccagcaaa cagatgctca agcgtatgaa
      361 tccctttttc cggcatcact tctttgttcg gaatgcaaaa acgcagatca aacacggtga
      421 ttgcgtcgcc atgcggggtg ttcatcgttt ttgcaacccg gaccgccggc gcttgcatcc
      481 gggtatgatc gactgcgaag ctatctaata atggcattta gtcacctccg ataatttttt
      541 aaaaataaac tgaactcttt gttccggggc gagtctgagt atatgaaaga cgcgcatttg
      601 ttatcatcat ccctgttttc agcgatgaaa ttttggccac tccgtgagtg gcctttttct
      661 tttgggtcag gcgtgtttcg caagccacgc ggcaaacggc tcggtatccg ccgcctcaat
      721 ctcctgctga cgacgtactg aagcgtcacg ttcagcaata aactcttctt cctgtaaaat
      781 ctccagcggc tcttcgcgta acagattacg gtaagcctca ccgaacgctt tcccagtgcc
      841 gccaatgcct tcatcaatca tagaccgtaa gattcgggca gagaatgtca gttcaggatt
      901 atcaaagcag gcgaccaact catcacacac cttttgatac tcctctcccc cgtggatact
      961 gtccagcgtt tgcgccacgc gtttcagatc gcggaagaga tctttcccta ctttaggcag
     1021 cgggaactgc gcggtttcac agccaatccc cagggtaagg cccggcttac gcccttccag
     1081 aataacgcga ttccagttag tacgcgtaca taacagctca tcgctactca tttccggcgc
     1141 atcggccaat acgcaccaga ccataaacag atcgaggaag cgcacctgtt gctcgtctac
     1201 gccgatcggt gagaacggat taatatcgag agaacgaact tcgatgtact caataccacc
     1261 acgcagaagc gcatctgaag gcgattcgcc gctgcgcgtc acgcgcttgg gacgaatggg
     1321 cgcgtacagc tcattttcaa tttgcagaac gttgctgtta atctgtagcc gcttaccgtc
     1381 tttttccaca ccaatccgcg cgtactcttc tgacggcgtt ttaatcgccc gtttcagacc
     1441 tgcaacgtat tcatgtagat cgttaaacgt aatacccaga ttgctttgcg acttattggt
     1501 atagcccaaa tcactcaaac gcagcgacgt cgcatatggc aggtagtaca tgccgcagtc
     1561 cgttttttca aacggtaatg tggttggctt cccttgcagg aaagaggaac aaatggccgg
     1621 agacgcgcca aacagatagg ggatgaccca gccaaaacgg taatagttgc gaatcagacg
     1681 aaaatagccg gcagaaattt tttcttttgc cgcttcgcct tccgtaacgc cgcatttcgc
     1741 ctgccagaac gccatcggta atgaaaaatt gtaatgtacg ccggaaatgg tttgcatcaa
     1801 agcgccataa cgatttttca gcccttcgcg atagagcgtc ttaaagcgcc cggtatttga
     1861 tgtgccgtac tgcgccagct ctatgtcctg cccttccgca atatagcagg gcatacttaa
     1921 tggccacatc cgctcatcgc ccagtttcct ggccgtatac cgatggagat cgcgcataaa
     1981 ggtgagcata tgctggatat cgccatcgac tggcgtaata aactccagta gggcttccgc
     2041 aaaatctgtg gtaatccatt tatgggtcag cgctgaacct aacgcttcag gatgaactgt
     2101 tgtcgccagc gtgccatcag cattgacacg cagcgtttcg cgctctaacc cgcgctgtat
     2161 cccctttaac gcctgaggat gtttttccag ccaggccaga gcctgtgata cgtccgggat
     2221 caaattgacc tcccgcctgt ccaaatcgtt ttaataagca taactgtaat ggcggccata
     2281 catgccaaac ctacaattat taccaccaca tcatgccctg aaccgtcgcc gctgcgagcg
     2341 caacatagcg cagcgcctta ccaagacaca aaaaaaagat cgtccgcccc cacgggatgc
     2401 gcatccatcc cgctaacagg cacaacaaat caccgatgac cggcatccag cttaataata
     2461 gtgtggctgc gccataacgc tttagccagc cagtcgcttt ttcctgccaa cgcgacgttt
     2521 tgcgcagcgg aaagaaacgc ccaagaataa cgttagttac ccctccaagg ctattaccca
     2581 ttgttgctgt taagactaag acccagggat gactgacgcc ggagaccagc atagcaacca
     2641 aaaccacctc agaattaccg ggtaacagcg tcgcgctgag aaaactactg gcaaacagag
     2701 acaggagcga cagtccgtca ctcacaatag tcggacatcc acggcatcca ttcccgccgc
     2761 ccgcgccgcc tgtaaaccaa aatcggcatc ttcaaatacc acgcactgcg tcggcatgac
     2821 gcccatccgc tgggcgcaca ataggaaggt gtcaggcgca ggtttgtgat gctgtacgtg
     2881 atctgccgcc acaaccgcat caaaataacg acgcagcccc agatgcgcta acaaggcttc
     2941 cgcgatagcg ctttcgctac cggtaccgac cgacatggga cgccgcccat gccacgcttt
     3001 gaccacctca accagcggca gcggttctac gcagtccagc aggatgcttt ttaccgcgtc
     3061 ggttttctca cgcgccagtg acaggggatc aagatcggca tggttaagct caatgattga
     3121 ctgggcgata agccaggttg gcgaaccgtt aagcgcgacc attgcctgtt catcaaaacg
     3181 aagaccatag cgccccaaaa cctcacgcca cgctttgcga tgcgtgggtt cggtatccag
     3241 gagagtaccg tccatatcaa aaatcaaacc agcataacgt gcgtacatcg tgttctcgca
     3301 aaccgaataa ccagacagta ctttatcgca attggttgat tttgtcgcta atagagatga
     3361 agaggtatat tcaggataag ggggaaaagc gattgcaggg cagtaacgta tccgggagga
     3421 ttactcgccc ttcgggccgt tgctgatgca acgttatcct tctgatgcca gcggtgatta
     3481 ccgctatctt atctgcatct tcatcgctga aagtatggag aatatggtgc atccgggagg
     3541 attactcgcc ttacggctcg cccttcgggc cgttgctgac gcaacgttat ccttcctggt
     3601 gcctgcggtg attaccgcta tcttatccgc atctttatcg ctgaaagtat ggagaatatg
     3661 gtgcatccgg gaggattcga acctccgacc gctcggttcg tagccgagta ctctatccag
     3721 ctgagctacg gatgcattgg gaaacttgct ttactgctga tattgatacc gcggtgaaag
     3781 ccgtatcaat taagagatgg tgtatccggg aggattactc gccttacggc tcgcccttcg
     3841 ggccgttgct aacgcaacgt tatccttcct ggtgccagcg gtgattaccg ctatcttatc
     3901 cgtatcttca tcgctgaaag tacggagaat atggtgcatc cgggaggatt cgaacctccg
     3961 accgctcggt tcgtagccga gtactctatc cagctgagct acggatgcat cggaaaactt
     4021 gctttactgc cgatattgat accgcggtga aagccgtatc aagtaagaga tggtgcatcc
     4081 gggaggattc gaacctccga ccgctcggtt cgtagccgag tactctatcc agctgagcta
     4141 cggatgcatc gggaaactta ctttactgca gattttgata ccgcggtgaa agccgtatca
     4201 agtaagagat ggtgcatccg ggaggattcg aacctccgac cgctcggttc gtagccgagt
     4261 actctatcca gctgaagcta cggatgcaaa tggcggtgag gcggggattc gaaccccgga
     4321 tgcagctttt gaccgcatac tcccttagca ggggagcgcc ttcagcctct cggccacctc
     4381 accacacgcc tcttacgagt gcttcgaaga acttgttctg ctcatcgtcg ctgcgtggcg
     4441 cacatattac tttctgggac ttataagtca aacaattttt ccagagcttt tatcgtttgc
     4501 acacttcacg ctcaattagt ctataaaaaa gccaaaaaga gtgttttatc aacagataat
     4561 ttgatgacac gctggccgcc aaaagcgcac catatcaaca gtgaggttga aaaaagtcat
     4621 gaggggacaa cgcgggcgag cgagaagaga ggctgcgtct cacccgaaaa gtgagacgcg
     4681 aaaaccttag taactggact gctgggattt ttcagcctgg atacgctggt agatctcttc
     4741 acgatggaca gaaacttctt tcggggcgtt cacgccaata cgcacctggt tgcccttcac
     4801 ccctaaaact gtcacggtga cctcatcgcc aatcatgagg gtctcaccaa ctcgacgagt
     4861 cagaatcagc attctttgct ccttgaaaga ttaaaagagt cgggtctctc tgtatcccgg
     4921 cattatccat catataacgc caaaaagtaa gcgatgacaa acaccttagg tgtaagcagt
     4981 catggcatta cattctgtta aacctaagtt tagccgatat acaaaacttc aacctgactt
     5041 tatcgttgtc gatagcgttg acgtaaacgc cgcagcacga gctgcggcgc caacgaacgc
     5101 ttataattat tgcaattttg cgctgaccca gccttgtaca ctggctaacg ctgcaggcag
     5161 agctgccgca tccgtaccac cggcttgcgc catgtccgga cgaccgccac ccttaccgcc
     5221 cacctgctga gcgaccatac caatcaattc ccctgcttta acccggtcgg tcacatcctt
     5281 cgacacgccc gcaatcagag aaaccttacc ttcaacaacc gttgccagta cgataacggt
     5341 agaccccagt tgatttttca gatcatcaac catggttcgc agcattttcg gctcaatacc
     5401 agcaagctcg ctgaccagga gcttcacgcc gttgagatcg accgctttac tggaaagatt
     5461 tgcactctcc tgcgctgcgg cctggtcctt caactgctgc aactcttttt ccagctgacg
     5521 cgtacgttcc agcacggcac gcactttgtc gcccagattc tggctgtcgc ccttcagcag
     5581 atgcgcaata tcgtttaagc gatcgctttg cgcgtgaacg gtggccatag cgccttcacc
     5641 ggttaccgcc tcaatacgac gaatgcccgc tgcggtgccg gactcagaga taatacggaa
     5701 tagaccgata tcaccggtac gactggcgtg agtaccgccg cacagttcgg tagagaaatc
     5761 gcccatgctc agaacgcgta cacgttcgtc gtatttctcg ccaaacagcg ccatggcccc
     5821 tttcgccttc gccgcgtcga gatccatgat gttcgtttca atcggcaggt tgcggcgaat
     5881 ttgcgcattc accaaatctt caacctcacg aatctccgac ggcttcatcg cttcattgtg
     5941 cgagaagtcg aagcgcagca ctttatcgct aaccagcgaa cctttctgcg caacgtgtgt
     6001 cccaagcacc tggcgcaacg ccgcgtgcat caggtgcgtg gcggagtggt tcagacggat
     6061 acgtgcgcgg cgcgcttcat ctacgtcagc ctgtaccgca tcgcccactt tcagagcgcc
     6121 cgcagacaat ttgccgaggt gaccaatcgc ctgaccatat ttttgcgtgt cgtccacagc
     6181 gaaagtaaat ccagcgcctt tcagctcgcc tttatcgcca acctgaccgc ctgattccgc
     6241 atagaatggg gtctgatcca gcacgacaac agcttcctgt cccgcgttaa tcgcttcaac
     6301 cgctttacca tcgacaaaca gcgcagtcac tttgccgttc agttccagat ggtcataacc
     6361 tttaaattca gaagcgctgt caacgcggat catcgcgttg tagtccgcgc caaaaccgct
     6421 agcttcgcgc gcgcgacggc gttgctcttc catggcggct tcaaaaccgg cttcgtcgac
     6481 tttgatgttg cgctcacggc agacgtccgc cgttagatcg accgggaaac cataagtatc
     6541 atacagacgg aaagcggttt cgccgtccag ggtgtcgccc tgcaatttcg ccagttcttc
     6601 atccagcagc gccagaccgc gctccagcgt acgagcgaac tgctcttctt ccgttttcag
     6661 aacctgctcg acctgcgcct gctgacgttt caactcttcg cctgcggagc ccattacctc
     6721 aatcagcggc ccaaccagct tgtagaagaa ggtctctttt gcgcccagca tgttgccgtg
     6781 acgaaccgcg cgacgaataa tgcgacgcag cacatagcca cggttttcat tcgacggcag
     6841 cacgccatcg gcaaccagga atgcgcaaga acggatgtgg tcggcgataa cgcgcagcga
     6901 tttattaccc aaatcggtgg agccggtgac tttcgctacc gcttcaatca acgtgcggaa
     6961 caggtcgatg tcatagttag agttaacgtg ttgcagtacc gcggcaatac gctccagccc
     7021 cataccggta tctacagacg gtttcggcaa tggttccatc gtcccgtcag cctgacggtt
     7081 gaactgcata aagacgatgt tccagatttc aatatagcga tcgccgtctt cttccgggct
     7141 tcccggaggg ccgccccaga tgtggtcgcc atgatcgtag aagatttcgg tgcacggacc
     7201 gcagggaccg gtgtcgccca tctgccagaa gttatccgat gcgtatggcg cgcctttatt
     7261 gtcaccgata cggatgatac gctcgcgcgg gatgccgact tctttttccc agatctcata
     7321 ggcttcgtcg tcggtttcat agacggtgac ccataagcgc tcttttggca gagcaaacca
     7381 gttttcgccg gtcagtaatt cccatgcgaa ctgaatggcg tcgtgtttga aataatcgcc
     7441 gaagctgaag ttgcccagca tttcgaagaa agtatggtga cgtgcagtgt atccgacgtt
     7501 ttccagatcg ttgtgtttac cccccgcgcg tacgcaacgc tgggaagtgg ttgcacggga
     7561 ataattacgt ttatcgagcc caaggaaaac atccttgaac tggttcatcc cggcattggt
     7621 aaacaacaga gtggggtcat tgttaggcac cagggaactg ctggcaacta cctgatgccc
     7681 tttactatgg aaaaagtcga gaaacgcctg acggatctca gcggtgctct tgctcataat
     7741 tatcctgaaa tcaagctaca ctccatcctt caggccgcct ctgcgttggc tgcgagtttc
     7801 ccggtcacgc gttcccgagg ctcacttgcc gctttaatgc ggcttgaatg attttgtgta
     7861 tttaaggaat attcgtcgca gacgctgttc gccgttaagc aacccgcgtc cagacggaaa
     7921 aagtgggaat aagataagtt ttctttaccg ggaagtaaaa tcccgtatgc gctcaatctg
     7981 caaaatttcg ccatatttgc tggatatcgt ccatcagata cccgcgatag agcaaaaagc
     8041 gctgtacctt aaccttttct gaaaagtttg aagggagcgg ctcgccatat ttgcgaacgg
     8101 cctgttcacg tgccatttca ctccagtcaa tttcacattc tcgcatcgct ttttcagtcg
     8161 attcacggga aatgcctttc tgattcaact cctggcgaat acgcgccggg ccatagcctt
     8221 tgcggctacg actggcgata aagcgcatca cgaagcgctc gtcatcaaga tagtggtgtt
     8281 cgtggcacca ggcgatcacg cgttcataat cgtctgccgt cgcatcaatc tcttccggcc
     8341 catttttgcc catcaccggc gcggagagtt tacgccgtag ttcctgctcg ctgtgatcgc
     8401 ggacagcaag aatacgtacc gcacgatcaa ggagacgagc ataagcggga cggcgcgatg
     8461 tgggttcact cataaaaaac cttaacaggg gtaaatgcca aaagggccgc ataaatgcag
     8521 cccttgatgg taatttaacg ttttgctgaa tggcggcttc gttttgtccg acccaccatc
     8581 acctgatgat taaaaatctt cgttggtttc tgcaacgcct tcgctatcgt caacggcgaa
     8641 atcgggcgtg gcattctgat tactcaacag taattcacgc actcttttct cgatctcttt
     8701 cgctgttgcc gggttctctt tcagccaggt agtcgcgttc gctttaccct ggccaatctt
     8761 ctcgccgttg tagctgtacc atgcgcccgc tttctcgatc agcttctctt tcacgcccag
     8821 gtcaaccagt tcgccataga agttgatgcc ttcgccgtag aggatctgga actcggcctg
     8881 cttaaacggc gcggcgattt tgtttttcac cactttcaca cgcgtttcgc tacccacgac
     8941 attatcgcct tctttcaccg cgccaatacg acggatatca agacgaacgg aggcgtagaa
     9001 tttcagcgcg ttaccgccgg tggtggtttc cgggttacca aacatcacgc caattttcat
     9061 acggatctgg ttgatgaaga tcagcagcgt attggactgt ttcaggttcc ccgccagctt
     9121 acgcatcgcc tggctcatca tacgcgccgc gaggcccatg tgagagtcgc cgatttcgcc
     9181 ttcgatttcc gctttcggcg ttagcgccgc tacggagtcg accacaatga cgtccaccgc
     9241 gcctgaacgc gccagcgcgt cacagatttc cagcgcctgc tcgccggtat ccggctgaga
     9301 acagagcagg ttatcgatat cgacgcccag cttgcgtgcg taaacagggt caagcgcgtg
     9361 ttccgcatcg ataaacgcac aggttttacc ttcacgctgc gcagcggcaa tcacctgcag
     9421 cgtcagggtc gttttaccgg aagattccgg cccgtaaatt tcgacgatac gccccatcgg
     9481 cagaccgccc gcaccgagtg cgatatccag tgaaagcgaa ccggtggaga tagtttccac
     9541 atccatagaa cggtcttcac ccagacgcat gatggagcct ttaccaaatt gcttttcaat
     9601 ttggcccagt gctgccgcca acgctttctg tttgttttcg tcgatagcca ttattactcc
     9661 tgtcatgcaa cttggtattg aaccggatag tgaattcgta ctgttgaagc aattatactg
     9721 tatgctcata cagtatcaag tgttttgtag aaattgttgc cacagggttt gtagcgcgta
     9781 tgtcgtcgcc tgtcgacgca ccgattcacg gtcgccgctg aagcattccc gacgcgtaat
     9841 cccttctcca ctgacgctgg cgaaagcaaa ccacaccgta ccaaccggct tttcttcact
     9901 gccgccatcc ggcccggcaa tcccgctaat agcgacagca aaatcggcgc gagcggcctt
     9961 cagcgccccg atcgccattt cgaccactac ggattcgctg accgcgccat gctgcgccag
    10021 cgtctcttca cgcacgccaa tcatctgcgc tttggcttca ttactatagg tgacaaagcc
    10081 gcgttcaaac caggcggaac ttccggcgat gtcggtaatg gctttcgcca gccagccgcc
    10141 ggtacaggac tccgctgtcg ttacggtcgc cccgcgcgct tttaacgcca gcccgacctg
    10201 ttcgctaagc cgcatcagtt cactgtcagt catcatgacc tctgtcagtt agaaatcctg
    10261 ccgcacaaga tagcactttc tcaccagaga tggggacgag ctgtcgattt tacgagtcgg
    10321 attccgaaaa aatgccagca ggttatttat gcagaatgaa agaggtagca catgactaaa
    10381 tagcagtact atgtcgctaa atttacacgc acggagagaa agcaaggatg tcactcaaaa
    10441 aaacggaaag cgcacagcac aaactgaaac aaacctgtca actacggctg tggttaattg
    10501 tgggtggagt atgttcatta ggaatgggag tactgaatat attgtcgtca ggctattttg
    10561 aaccgtatga cggcggtcaa attatcttag gcctgggatg tctgggttat agtctggcac
    10621 tatcaaaaaa gatatcccac ttgcaagccc aaaaagccat agtaatagcg gaggggggct
    10681 cccctcccta agcgtaaatt agcgcacccg cgccagcgct accgcctgcc ccagttgcca
    10741 aaccgccatc gcataatgcg tgctgtggtt atatcgggta atggtgtaga agttcggcag
    10801 gccgtaccag tactggtatc ccgtaccgat atccagacgc agcaggctgg cttcctgatg
    10861 attgcccaac gattgctgcg gcgttaagcc tgcggcggca agctgagaga tgctgtattt
    10921 tgttttgaaa ccattcgcca acccaggcgc ctgaccactc gccggcaccg caaccatatc
    10981 gcctttcacc caaccatgcg ccttgaaata gttcgccacg ctgccgatgg catctaccgg
    11041 atcccacaag ttaatgtgcc catcgccatt gaaatcgacc gcatattctt tataggaaga
    11101 cggcataaac tggccgtagc ccatcgcgcc ggcaaaggaa cctttcagat tgagcggatc
    11161 gtcttgctca tcgcgcgcca tgagcaggaa ggtttccagc tcgccggaga aatattccgc
    11221 ccggcgcgga tagttaaatg acagcgtcgc cagcgcgtcc agaatccgtg ttttccccat
    11281 gatacgtccc cagcgggttt ccacgccgat gatgcccaca atgatttccg gcggtacgcc
    11341 gtatacctgc caggcgcggt tcagcgcgtc ttcatactga ttccagaacg cgacgccgtt
    11401 ttgcacgtta tccggcgtaa taaattgttt gcggtagcgc aaccaggcgc catttggtcc
    11461 ggcgggcggc tgagtggtcg gcgcttgtct gtccatcaga cgcagaacgt aatccagtct
    11521 tttagactgc gagaggatct cttgcagctg ctgacggtcg aaaccgtgtt tactgaccat
    11581 tttatcaatg aactgctgcg cattagggtt gttggcgaag tcgccgccca tttgcatgac
    11641 gttatgctgc ggctcaagca ggaagccgcc ggaaggcgtg cccgtcgtcg cttgagtctc
    11701 ggaagatttt ggcgtgctgc tacaggcagc aagcaatacg caaagtggaa gtaacgctac
    11761 ataacgacgc ttgaacatga gacatccatt aaacaaattc agccagggag aagtatggta
    11821 aagcatcccc ccgccgcaca aggaagcggc acaagagaat aaatcacctt tcccctctct
    11881 ccagtttgta tctgctcctc cactccctc
//
LOCUS       DAJVSD010000129        11897 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.129, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000129 DAJVSD010000000
VERSION     DAJVSD010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11897
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.129"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            141..1514
                     /locus_tag="OQP62_002807"
     CDS             141..1514
                     /locus_tag="OQP62_002807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1722314.1"
                     /translation="MSSVIEDTQPSGSASLSLLQRISYGSLDVAGNLLYCFGSTYILY
                     FYTDVAGISLAVAGIILLLARIVDGIDAPIWGIIIDKTRSRYGKCRPWFLWLPLPFAV
                     FSALSFWSPDISITGKAIYAAISYMIASILFTGLNTPLSAILPLMTLSPKERLVLNSW
                     RMTGGQIGVLLMNATALPLVAFLGNGDDHAGFIYTAITFAIISCALTLFAFKNIREMD
                     ADKIQHEPKLPMKKSFAAMKGNWPWILMVLANLIFWIALQQRSTTIVYYLTYNLDRKD
                     LVPLINSLATIQILFIIAIPFFSKYLAKTWIWVGGLLVATFGGVMMWLAADNITFLIA
                     AWILGNIGSGIACSMPFAMLGFAVDFGAWKTGIKATGILIAFGSTFCIKMGSGLGTAL
                     AAWIMNSFGYVPNHAQSAAGLEGITWAFIWAPALLFALAAIPLLFFRKYEAMEEKIRH
                     DLETINS"
     gene            1554..3593
                     /locus_tag="OQP62_002808"
     CDS             1554..3593
                     /locus_tag="OQP62_002808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 31 protein"
                     /protein_id="HCS1722315.1"
                     /translation="MPFMQQDPRRLVWQQNDRYLWIEPWGENSLRVRSGRHLPVMRNE
                     DWALTEPVAESQCHIDYEHHQATLTNGKIIAIVNQKGQVTFYRHPHKPLLQEFWRLRG
                     EIGEDESSHGQYVSALNLEGREFRPIQGGKYSLKARFEATEGEKIYGMGQYQQANLDL
                     KGCVLELAQRNSQASVPFMLSSLGYGFLWNNPAVGRVTFAQNVTEWEAQVSEQLDYWI
                     TAGDTPAEIGRAYALATGTPPMMPDYAMGFWQCKLRYRTQEELLEVAREYKRRNLPIS
                     VIVIDFFHWPNQGDWMFDARDWPDPDAMIAELKSLGIELMVSVWPTVDNRTESYREMR
                     ENGWLVQTERGLPINMDFLGNTTYFDATHPGARDYVWGKAKRNYHDKGVKLFWLDEAE
                     PEFSVYDYDNYRYHAGPVLEVGNIYPRMYAKTFFDGMKADGEDQVINLLRCAWAGSQK
                     YGALVWSGDIHSSFRSLRNQFAAGLNMGIAGIPWWTTDIGGFHGGNIHDPKFHELLIR
                     WFQWGVFSPVMRLHGNRDPQILPAQPYRDGIAQCPTGAPNEVWSYGEEVCDVLTGCLA
                     LREKLKPYIKALMEETHKHNTPVMRPLFFEFPEQETSWTITDQYCFGPDLLIAPVMHE
                     GMRERDVWLPEGETWTDLATGESYSGGQTLHYATPLNRIPVFIREGGQYRSLLNL"
     gene            complement(3648..4547)
                     /gene="nhaR"
                     /locus_tag="OQP62_002809"
     CDS             complement(3648..4547)
                     /gene="nhaR"
                     /locus_tag="OQP62_002809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator NhaR"
                     /protein_id="HCS1722316.1"
                     /translation="MSMSHINYNHLYYFWHVYKEGSVVGAAEALFLTPQTITGQIKAL
                     EERLQGKLFKRKGRGLEPSELGELVFRYADKMFTLSQEMLDIVNYRKESNLLFDVGVA
                     DALSKRLVSSVLDAAVVVDEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQE
                     GLFSVKIGECSVSFWCTNPLPEKAFPACLEERRLLVPGRRSMLGRKLLNWFNSQGLQV
                     EILGEFDDAALMKAFGATHDAIFVAPSLYSLDFYADESVIEIGRVENVMEEYHAIFAE
                     RMIQHPAVQRICNADYSALFKLQ"
     gene            complement(4609..5775)
                     /gene="nhaA"
                     /locus_tag="OQP62_002810"
     CDS             complement(4609..5775)
                     /gene="nhaA"
                     /locus_tag="OQP62_002810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HCS1722317.1"
                     /translation="MKHLHRFFSSDASGGIILIIAAALAMLMANMGATSGWYHDFLET
                     PVQLRVGALEINKNMLLWINDALMAVFFLLIGLEVKRELMQGSLASLRQAAFPVIAAI
                     GGMIVPALLYLAFNYSDPVTREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALA
                     IIDDLGAIIIIALFYTSDLSIVSLGVAAFAIAVLALLNLCGVRRTGVYILVGAVLWTA
                     VLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSL
                     QGVTMDGLTSMLPLGIIAGLLIGKPLGISLFCWLALRFKLAHLPQGTTYQQIMAVGIL
                     CGIGFTMSIFIASLAFGNIDPELINWAKLGILIGSLLSAVVGYSWLRARLNAPA"
     gene            complement(5938..7653)
                     /locus_tag="OQP62_002811"
     CDS             complement(5938..7653)
                     /locus_tag="OQP62_002811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
                     /protein_id="HCS1722318.1"
                     /translation="MNTLTATSVVLPAPRPAINQGIDINNEIVLNHTAIYENCLAQVT
                     QENTVENALMLLDPYGTAPLSAYAGVWSLEPAEIMVTVQDAAKTAMPVEHLYTLTAGA
                     NLLPVLGLVAETENRIVFSQADTPLAVYTLTTQPLPPVDSAEVVLGFPIINVTQPATD
                     VDKMAPGFYFVTHFDRYNYALDQNGLVRWYVTQDYPSYNFVRIDNGHFLTTSEAKNTY
                     LDMYEFDMMGRLHTFYNLDNQFHHSIWPWDSNTIVAPSEYTSGRPDDLKTNEDGVSVV
                     DLATGLETAYYDMAKVLDTTRVSRPSGTAPGEDPTVKDWLHINQSYVNETNQLLIASG
                     RHQSAVFGVDLQTQALRFILSTHEDWDDAYQPYLLTPVDSEGVALYDFSKQEDIDAAD
                     RDFWTWGQHNVVEIANNTPGIVEFMVFDNGNYRSRDDSKSLLPPDNYSRIVHFVVNMN
                     EMTVMRPFEYGKELGARGYSSCVSAKAIQQNGNIVVHFADCTFDENGRAISCQPGESD
                     IIDPQAGSEAMGLLILQEIAPTEKTVLFEATMTSGYYKNAETNGEGYRYDITSFRVYK
                     MDLYA"
     gene            complement(7780..9032)
                     /locus_tag="OQP62_002812"
                     /pseudo
     CDS             complement(7780..9032)
                     /locus_tag="OQP62_002812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459042.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(9051..10241)
                     /locus_tag="OQP62_002813"
     CDS             complement(9051..10241)
                     /locus_tag="OQP62_002813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HCS1722319.1"
                     /translation="MMFGKSCQVMVKPTGSVCNLDCKYCFYLEKEKLYPDRKNHYKMS
                     EETLELFIRQQIAAQDIDEVIFAWQGGEPTLMGIPFYRKAVEFQQRYCGGKTIVNTFQ
                     TNGILINDDWATFFREHDFLVGVSIDGDAALHDEWRVTRSGKPTHEKVENAVRCLAQH
                     DVEFNTLTVVNRTNMHHPVQVYRYLKSVGSRYMQFIPLVERCGENGLAQPQDKHIAMT
                     PWSVDSLQFGQFLNAVFDIWIREDIGDIGIQLFEQTLAAWCGLPPQVCVFAPTCGSAF
                     AMEMNGDVYNCDHFVYPQFKLGNIHQKTLRQMNQGEQNRQFGSDKQRSMAQECHRCQW
                     KFACYGGCPKHRFLPSASGATNHNYLCAGYQAFFSHTATAMSAMRTLYEKGISLAEIK
                     SIFV"
     gene            complement(10340..11833)
                     /locus_tag="OQP62_002814"
     CDS             complement(10340..11833)
                     /locus_tag="OQP62_002814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HCS1722320.1"
                     /translation="MKRTVVASMIGLALCAGCVLSTAQAATAKRPNLVIILADDLGYG
                     DLATYGHRIVKTPNIDKLAQEGVKFTDYYAPAPLCSPSRAGLLTGRMPFRTGIRSWIP
                     EGKDVALGRNELTIANLLKQQGYDTAMMGKLHLNAGGDRTDQPQAKDMGFDYTLVNPA
                     GFVTDATLDNAKERPRYGVVHPTGWIRNGQHIGRADKMSGEFVSSEVVNWLDNKKDDN
                     PFFLYVAFTEVHSPLASPKKYLDMYSQYMTDYQKQHPDLFYGDWADKPWRGTGEYYAN
                     ISYMDEQVGKVLDKIKAMGEEDNTIVIFTSDNGPVTREARKVYELKLAGETDGLRGRK
                     DNLWEGGIRVPAIIKYGKHIPQGMVTDTPVYGLDWLPTLANMMDFKLPTDRTYDGQSL
                     VPLLKDKTLKRQKPLIFGIDMPFQDDPTDEWAIRDGDWKMIIDRQNKPKYLYNLKTDR
                     FETLNQIGKQPQIEKQLYGKFLKYKKDIDNDSLMKARGDKPTPVTWG"
BASE COUNT         2952 a         3199 c         2865 g         2881 t
ORIGIN      
        1 actacttttc atgtacacct tacttactca ttttaatctg aggttaaatt cagaaacgac
       61 ataaaaataa tattcaaaac ttgcttagaa agtagaggtt gtttttctgg gcgtatcgta
      121 ccaatatcgg agttatcatt atgagttctg tcattgagga tacccagcct tccgggtcag
      181 catcattgtc tttactacag cgtattagct acggctcttt ggatgtggcg ggtaatctgc
      241 tatactgctt cggttcaacg tacattttat atttctatac agacgttgcg ggcattagcc
      301 ttgccgtagc aggcattatc ctgctgctgg cgcgtattgt cgatggcata gacgccccta
      361 tatgggggat catcatcgat aaaacgcgtt cacgctacgg taaatgtcgt ccctggtttt
      421 tatggttacc gctgcctttt gcggtattca gcgcgctgtc attttggtct cctgatatca
      481 gtataacagg aaaagccatc tatgcagcaa tatcttatat gattgccagc attctattta
      541 ccggacttaa tacaccactc agtgcaatat tacccctgat gaccttatct cccaaggaaa
      601 gactggtttt aaattcctgg cgaatgaccg gtgggcaaat tggggtttta ttaatgaacg
      661 cgaccgcctt gccgttagtc gcttttttag gtaacggtga tgatcacgct ggttttattt
      721 atacggcgat tacatttgcc attatatctt gcgcgctaac gctctttgcg tttaaaaaca
      781 ttcgtgaaat ggatgcggat aaaatacagc atgaacctaa gttgccgatg aaaaaaagtt
      841 tcgcggcgat gaaaggtaac tggccatgga ttctgatggt gctggctaat ctgatcttct
      901 ggattgccct acagcagcgc tccacgacca ttgtctatta tctgacctac aacctcgacc
      961 gtaaagatct ggtgccgctg attaacagcc tggcgacgat tcagatcctg tttatcatcg
     1021 ctatcccctt ctttagcaaa tacctggcta aaacctggat atgggtaggc ggtctgctgg
     1081 tcgccacgtt tggcggcgtc atgatgtggc tggcagcgga caacattact ttcctcatcg
     1141 ccgcctggat actcggcaat atcggcagcg gtatcgcctg ctcaatgcca tttgccatgc
     1201 tgggcttcgc cgttgatttc ggcgcctgga agaccggtat taaggctacc ggcattctta
     1261 tcgccttcgg cagtaccttc tgcatcaaga tgggtagtgg cctcggtact gctttagccg
     1321 cctggatcat gaacagtttt ggctatgtcc ccaaccatgc ccagagtgct gcgggtctgg
     1381 agggaattac ctgggccttt atctgggcac ccgccctact cttcgcgctc gcagcgatcc
     1441 cattactttt ctttcgcaaa tacgaagcga tggaagagaa gattcgccac gatctggaaa
     1501 ccatcaactc ataacgttct ttaccttcac cctcgaatat aggaggcacc accatgccat
     1561 ttatgcaaca agacccacgt cgtctggtct ggcagcaaaa cgatcgctat ttatggattg
     1621 aaccctgggg cgagaacagc ctacgcgtac gcagtggccg tcatctgccg gtaatgagaa
     1681 atgaagactg ggcattgact gagccagtcg cagaaagcca gtgccacatt gattatgagc
     1741 accaccaagc aacgctgacc aacggcaaaa ttatcgctat cgtcaatcaa aaaggacaag
     1801 ttacctttta ccgccatcca cacaaacccc tgttgcagga gttttggcgc ctgcggggcg
     1861 aaattggcga ggatgaatca tctcacggcc agtacgtcag cgcactcaac cttgagggac
     1921 gcgagttccg cccgattcag ggtgggaaat attcactgaa agcccgcttc gaagccaccg
     1981 aaggggaaaa aatttatggc atggggcagt atcaacaggc caacctggat ctcaaaggat
     2041 gcgtgcttga gctggcgcaa cgtaactccc aggcctcagt accatttatg ctctccagtc
     2101 tgggctacgg atttttatgg aacaacccgg cagtcggacg cgtaaccttt gcccaaaacg
     2161 ttaccgaatg ggaagcgcag gtcagcgaac agttagacta ctggatcacg gctggcgata
     2221 ccccggcaga aattggccgg gcttacgcgc tggctaccgg cacgccgccg atgatgccgg
     2281 actacgccat gggcttctgg cagtgcaaac tccgttatcg tacgcaggaa gagctgctgg
     2341 aggtcgcccg cgaatataag cgccgcaatc tacctatctc ggtgatcgtt atcgacttct
     2401 ttcactggcc gaatcagggt gactggatgt tcgatgcgcg cgactggccc gatcctgatg
     2461 ccatgattgc cgagctgaaa tcgctgggaa ttgagctgat ggtctccgtc tggccgacgg
     2521 tggataaccg caccgaaagc tatcgggaga tgcgtgaaaa cggctggctg gtacaaacgg
     2581 aacgtggctt gccgatcaat atggatttcc tcggcaatac cacttacttt gatgcgactc
     2641 atccgggcgc gcgcgactat gtctggggca aagccaaacg caactatcac gataaaggcg
     2701 tgaagctatt ctggttagat gaagccgaac ctgagttcag cgtttacgac tacgacaact
     2761 atcgctacca tgccggaccg gtactggaag tgggcaatat ctacccacgc atgtacgcta
     2821 aaaccttttt tgatggcatg aaagccgatg gcgaagacca ggttatcaac ctgctacgct
     2881 gcgcctgggc cggcagtcag aagtacggcg ctctggtctg gtcaggggat attcactcct
     2941 cgtttagatc gctgcgcaac cagtttgccg ccggactcaa tatgggaata gcagggatac
     3001 cgtggtggac gacggatatc ggcggtttcc atggcggtaa tattcacgac ccgaaattcc
     3061 atgaattgct gattcgctgg ttccagtggg gcgtctttag tccggtgatg cgtctgcacg
     3121 gcaaccgcga tccgcaaatt ttacccgcgc aaccgtatcg ggatggtatc gcccagtgcc
     3181 ctacaggtgc gccgaacgag gtctggagct acggtgagga agtatgcgac gtactgacag
     3241 gttgcctagc gttgcgagaa aaactcaagc cctatatcaa agcgctgatg gaggaaaccc
     3301 ataagcacaa tacgccagtg atgcgccccc tgttctttga attccccgaa caggaaacaa
     3361 gttggacaat caccgaccag tactgttttg gtcctgacct gctgatcgcc cccgtcatgc
     3421 atgaaggtat gcgcgaacgt gatgtctggc taccagaagg ggaaacatgg acggatcttg
     3481 cgaccggtga aagctattca ggagggcaga cgctgcatta cgctacgcca ctgaacagaa
     3541 ttccggtgtt tatccgcgaa ggtgggcagt accgtagcct actgaacttg tagaatgatt
     3601 ccggctgcgg gttagttccg cagccggaag tattacggta ggtatgtcta ctgtagctta
     3661 aacaatgccg agtagtccgc attgcaaata cgctgcaccg ccggatgctg gatcattctc
     3721 tcggcaaaaa tcgcatgata ttcttccatg acattctcca cgcgcccaat ctctattacc
     3781 gactcatcgg cataaaaatc cagcgaataa aggctcggcg ccacaaaaat cgcatcatgc
     3841 gtcgcgccaa acgccttcat taaggccgcg tcatcaaatt caccgaggat ctcaacctgc
     3901 aacccctgcg aattaaacca gttcaacaac ttacgcccca gcattgagcg acgtcccggc
     3961 accagcaacc gtcgctcttc caggcaggca ggaaacgctt tttcaggaag cggattcgta
     4021 caccagaaac tgacgctgca ttcgccgatt ttgactgaga atagcccctc ctgctgcgtg
     4081 gaatctatcg ggcagtcgga gataatcata tccagcttgt gctggctgag ctgttcgagc
     4141 aacatttcgt gcgtggactc gaagcaacgc agatgtatgg gttcgtccac caccaccgcc
     4201 gcatccagaa cgctgctgac cagacgcttg gataaagcat cggcgacgcc gacatcaaac
     4261 aacaggtttg attctttgcg gtaattgaca atatccagca tctcctggct tagcgtaaac
     4321 attttgtccg catagcgaaa aaccagctcg cccagttcgc tgggttcaag accgcgtccc
     4381 ttacgtttaa atagcttccc ctgtaaacgc tcttccaggg ctttaatttg accagtaatg
     4441 gtttgcggcg tcagaaaaag cgcctctgcg gcgcccacga cagaaccttc tttatagaca
     4501 tgccagaaat aataaagatg gttgtagtta atatgagaca tgctcatttc tctccctgct
     4561 caatgtcgta agggagcgat acatcgctcc cccttccctt cgtactggtt atgccggcgc
     4621 gttcaaacgc gcgcgcaacc agctataccc caccactgcg gagagcaatg aaccaatcaa
     4681 aatgcccaat ttcgcccagt taataagttc cggatcgata ttgccaaatg ccaggctggc
     4741 gataaagatg gacatcgtaa agccaatgcc acacaaaatg ccgaccgcca tgatttgctg
     4801 ataagtggtc ccctgcggca gatgcgccag cttgaaacgc agcgccagcc agcaaaacag
     4861 gctaatcccc agcggcttac caatcagcag accagcaata attcccaacg gcagcatgga
     4921 ggtcagaccg tccatcgtga cgccctgaag agaaacgccg gcattcgcaa aagcgaagag
     4981 cggcaggatc aggtatgcga cccacgggtg cagaacatgc tccagacgct tggccggcga
     5041 gcgtccgtgt ttttctttca gcggaataaa gaagccgaca atgacgcctg ccagcgtcgc
     5101 gtgaacgccg gacttcagta ccgccgtcca cagcactgcc ccgaccagaa tatatacccc
     5161 tgtccgcctg acgccgcaca ggttcagcag cgccagcacg gcaatcgcga acgccgccac
     5221 gcccagcgag acgatagaaa gatcgctggt ataaaacagt gcgataataa tgatggcgcc
     5281 gaggtcatcg atgatcgcca gcgccatcag gaaaattttc agcgccagcg gaacccggct
     5341 gcctaacagc gccagcacgc ccagcgcaaa ggcgatatcc gtcgcggcag gaatagccca
     5401 gccctcacga gtgaccggat cggagtagtt aaaggccaga tagagcaatg ctggtacaat
     5461 catcccgccg atggcggcaa tcaccggaaa agcggcctgg cgcagactgg ctaacgagcc
     5521 ttgcatcagt tcgcgcttaa cttccaggcc aatcaacagg aaaaacacgg ccatcagcgc
     5581 atcgttgatc cacaacagca tgtttttgtt gatctcaagc gccccaaccc gtagctgaac
     5641 cggcgtctcc agaaaatcat gataccatcc actggtcgcg cccatattgg ccatcagcat
     5701 agccagcgca gcggcgatga tgagaatgat gcccccagag gcatcgctgc taaaaaatcg
     5761 gtgcagatgt ttcacttttt attctctcaa tcaggtgaat tcttcggatc tactatctta
     5821 cctcgcctga ctcatcgtta aaattagatt atatatgatg aatagctcgt tttttacgaa
     5881 atgaagtccg acttacgccg gactttttta gtgcagtcag tcattgatga tagaccgcta
     5941 cgcgtacaga tccattttat acacccggaa actggtaata tcgtagcgat agccttcccc
     6001 gttcgtttcc gcgtttttgt agtaacctga cgtcatagtc gcttcaaaaa gcacggtttt
     6061 ctccgtaggc gcaatctcct gtaaaattag cagccccatc gcctcgctgc ccgcctgcgg
     6121 atcgataata tcgctctcgc caggctggca agagatggcg cggccatttt catcaaacgt
     6181 gcagtcggca aaatgcacca caatattgcc attctgctgg atcgctttcg cgctaacgca
     6241 gctactgtag ccacgcgcgc ccagctcctt gccgtattca aatggccgca taacggtcat
     6301 ctcattcata ttcaccacga aatggacaat gcggctgtag ttatccggcg gtaacaggct
     6361 tttgctgtca tcacgcgaac ggtagttacc gttatcaaat accataaact ccactatacc
     6421 cggcgtatta ttggcgattt caacgacgtt atgctggccc cacgtccaaa agtcacggtc
     6481 ggccgcgtcg atatcctcct gtttgctaaa gtcataaagc gccacacctt cactgtcgac
     6541 cggggttaaa agataaggct gataagcgtc gtcccagtct tcatgcgttg acaaaataaa
     6601 gcgtaacgct tgcgtttgca gatcgacgcc aaacaccgcg ctctgatgac gcccggacgc
     6661 aattaacaac tgattcgtct cattcacgta gctctggttt atgtgcagcc agtctttaac
     6721 cgtcgggtct tctcccggcg ccgtacctga aggacgggaa acccgcgtcg tatccaacac
     6781 cttcgccata tcgtagtaag ccgtctccag tccggtagcc agatcgacaa ccgatacgcc
     6841 gtcttcattg gttttcaaat cgtcgggccg acccgaggta tattcagagg gcgcaacaat
     6901 ggtattactg tcccacggcc agatagaatg gtgaaattgg ttatcgagat tatagaatgt
     6961 gtgaagacgc cccatcatgt cgaactcata catatccaga taggtatttt tcgcttctga
     7021 agtggtgagg aaatggccat tatcaattcg aacaaaatta taagacggat aatcctgagt
     7081 aacgtaccag cgcaccagac cattctgatc taatgcgtaa ttatagcgat cgaaatgcgt
     7141 aacaaaataa aaccctggcg ccatcttgtc cacatcggta gcaggttgcg tcacgttgat
     7201 aatcggaaaa cctaatacga cctccgcgga atctaccggc ggtaacggct gtgtggtgag
     7261 cgtatagacg gcaagcggcg tatctgcctg agaaaagaca atacggtttt cagtctccgc
     7321 taccagcccc agaaccggca acagatttgc gcctgccgta agggtgtaaa gatgttctac
     7381 cggcatcgcc gtttttgccg catcctggac cgtgaccatg atctcagccg gttccagact
     7441 ccagacgccg gcataggcgc ttaaaggtgc cgtgccgtaa gggtctaaca acatgagcgc
     7501 attttctacc gtattctctt gcgtgacctg cgcaaggcaa ttttcataaa tagcggtatg
     7561 gttaagcact atttcattat tgatatcgat accctgatta atcgccggac gcggcgcagg
     7621 aaggacaaca gacgttgcag ttaacgtatt catgataaat ctccagtgta ttaatctcat
     7681 cgcccctcat ggggaccacg aaaattaata ctctggattt ttaagccgtc cgaataaaat
     7741 accgcaacaa cacctcatca cactttttat tttagcaatt cagttacatg aagcgtcata
     7801 ttcaaatttt aggtaatcca gtacggcaac aacattgcca ggagacatcc ggttaagatg
     7861 cggcaggaag ggatggttgt gaacatagcg aataaacgcc gtcgcgctat ttaacgtcgc
     7921 atgacgtaac aaactcacct ttttatttcc tgtgagattg catactgcca tcgcataatc
     7981 ccgtgtggaa aatgtacgcc agacgttgtt gcgaattccg ccgctcaaaa acaaccgcgg
     8041 agggagatcg cgtttgggcg gcgtaacgcc tctttcacgc acaaacgaaa tatggcagcg
     8101 cccctgacga agatagctaa aattcgccat catacagccg cccagaataa agcattcgtg
     8161 atcgagataa tgctggacat tcagggagcg ctcatccgtc aacgcctgaa ccaactcaaa
     8221 atgtcgataa gcaggtaata cgggttttac taacatcccc ggatcgtttt tatataaaat
     8281 ggcggggccg taatccacat caaataatac attgcggcgc atggtcagcg cctcttttcg
     8341 ctgcaccaga tgcgccagcg tgccggacgg aagtcgttct tcgtaatcag aatgatattg
     8401 ataatccgct tccaccggtt gggcggagta attcgttgag atcgcaacga ccttaccgct
     8461 ctcctcttcc gccgtcacca gcacatataa gctgctgtcg ccgccgttaa atttcacacg
     8521 aaacgcccgc gtgctcatag cgatatcaaa cgcgggaaac acaaaatcgc gttccgcttg
     8581 attagcgcga cgggacagtt tttgtaattc gcggctaaaa cccgtgctgt ctatcgccag
     8641 cgccgcgcgt atttcaacta gcgacgctcc ttcgccaatc aacgtggcaa ggttctcttg
     8701 tctggcgtcg ctcctgatag cggtatagga gatgaacgtt ttattacact ggcggcaata
     8761 catacgccgt tcacctttag tggaaaatcc atatttttca gcgacgtccc gccacaatgc
     8821 ggacaggact tcaccagacc tttccagggt tgattcgccg cctggcgaaa aagattaagc
     8881 gatctggctg agataatggg gaacaaaaaa ccgcacgctc gacagagaac atttttccct
     8941 tgcggtagat agtctgggct ccccagaatc cccagatttt tgcagcctgg cgttttgcaa
     9001 gcatcgacat taatgtgaga aaacatattc actccctgcg aatactacct tcaaacaaat
     9061 attgacttta tttctgcaag tgagatgcct ttttcataca gggttcgcat ggcactcatc
     9121 gccgtcgcgg tatgcgagaa aaaagcctga taacctgcac acagatagtt atgattggtt
     9181 gcgcctgacg cagagggtaa aaaacgatgt ttcggacagc cgccatagca ggcgaacttc
     9241 cattgacagc gatgacactc ctgcgccatt gaacgctgtt tatcgctgcc gaactggcga
     9301 ttttgttcgc cctgattcat ttgacgcagc gtcttctggt ggatattccc cagtttaaat
     9361 tgcggatata cgaagtgatc gcagttataa acatcgccgt tcatttccat cgcaaacgcg
     9421 ctgccgcagg tgggagcaaa aacgcaaacc tgcggcggca ggccgcacca ggccgccagc
     9481 gtctgttcaa atagctggat gccgatatcg ccgatatcct cacggatcca gatatcaaat
     9541 accgcattca gaaactgacc aaattgcagg ctatcgaccg accacggcgt catcgcgata
     9601 tgtttatcct gcggctgcgc cagcccattt tccccacagc gttcaactaa agggataaat
     9661 tgcatatagc ggctaccaac gcttttcagg tagcgataga cctgaacagg atgatgcata
     9721 ttggtacggt taaccaccgt gagggtatta aattctacgt cgtgctgcgc cagacaacgc
     9781 accgcatttt ctactttttc atgcgtcggc tttccggagc gcgtcactcg ccattcatcg
     9841 tgtaacgcgg catcgccatc aatagagacg ccaaccagaa aatcatgctc ccggaagaag
     9901 gtcgcccagt catcgttgat caggatgccg ttggtctgga aggtattgac gatggttttg
     9961 ccgccacaat agcgctgctg aaattcaacg gctttacgat aaaacgggat gcccattaat
    10021 gtgggttccc cgccctgcca cgcaaaaatg acctcatcaa tatcctgtgc ggcaatctgc
    10081 tgcctgatga agagttcgag ggtctcttcc gacattttgt aatggttttt tcgatccgga
    10141 tagagctttt ctttctccag ataaaaacag tacttacagt caaggttaca caccgatccg
    10201 gttggtttaa ccatgacctg acaacttttc ccaaacatca ttaccttccc tgaaataaaa
    10261 gaacctgatc cggcacagag tgaccggatc aggtgggcat cgccctaagt ggcatactta
    10321 attttttata attattccat tagccccagg tgacaggcgt cggcttatcg ccacgggctt
    10381 tcatcagcga atcgttatca atatcctttt tatacttcag gaacttaccg taaagctgtt
    10441 tctcaatctg cggctgttta ccaatttgat tgagcgtctc gaaacgatcg gttttcaggt
    10501 tatagagata tttaggttta ttctggcgat cgatgatcat cttccagtcg ccgtcgcgga
    10561 tcgcccactc atccgtcgga tcgtcctgga acggcatatc gataccgaag atcagcggtt
    10621 tctggcgttt taacgtcttg tccttcagga gcggaactaa agactgaccg tcgtaggtac
    10681 gatcggtcgg gagtttaaag tccatcatgt tggccagcgt cggcaaccag tcaagaccat
    10741 ataccggcgt gtccgttacc atcccctgtg gaatgtgctt gccgtatttg atgattgccg
    10801 gtacgcgaat gccgccttcc cacaggttgt ctttacgccc gcgcagaccg tcggtttccc
    10861 cggccagttt cagctcgtat accttacgcg cttcgcgcgt gacagggccg ttgtcgctgg
    10921 taaagatgac gatggtgtta tcttcctcgc ccatcgcctt aattttatcc agcactttac
    10981 cgacctgctc atccatgtag ctgatattgg cgtaatattc gccggtgccg cgccacggtt
    11041 tgtctgccca gtcgccgtag aacagatccg gatgctgctt ctggtagtcg gtcatgtact
    11101 gcgaatacat atcaaggtat tttttcggcg acgccagcgg gctatggact tcggtaaagg
    11161 cgacatataa gaagaacgga ttatcgtctt tcttattatc cagccagttc accacttcag
    11221 agctcacaaa ctcgccgctc atcttatctg cgcggccaat atgttggcca ttacgaatcc
    11281 accccgtagg atgcaccacg ccatagcgcg ggcgctcctt ggcgttatcc agcgtagcat
    11341 cggtgacaaa tcccgccgga ttaaccaacg tatagtcaaa gcccatgtct ttcgcctgcg
    11401 gctgatcggt gcgatcgccg cccgcattca ggtgtaattt ccccatcatc gccgtatcgt
    11461 agccctgctg ttttagcaga ttggcgatag tcagttcatt acgccccagc gcaacatctt
    11521 tgccttccgg tatccaggaa cggattccgg tacggaacgg catacgaccg gttaacaggc
    11581 ccgcgcggga aggagaacac agaggcgctg gcgcataata gtcggtaaac ttcaccccct
    11641 cctgcgccaa tttgtctatg ttaggtgttt taacgatgcg gtgcccgtag gtggcgagat
    11701 cgccataccc taaatcatcc gccagaataa tgactaagtt aggacgcttt gcggttgccg
    11761 cttgcgcggt tgataatacg catccagcgc atagcgccaa ccctatcata ctggcaacga
    11821 ctgttctttt catttcaact cctttgagtt atcgcacggt ctgattacga tatatttgcc
    11881 gatagacccg gctgcgg
//
LOCUS       DAJVSD010000130        11892 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.130, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000130 DAJVSD010000000
VERSION     DAJVSD010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11892
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.130"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(347..2389)
                     /gene="dcp"
                     /locus_tag="OQP62_002815"
     CDS             complement(347..2389)
                     /gene="dcp"
                     /locus_tag="OQP62_002815"
                     /EC_number="3.4.15.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000106277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-dipeptidase Dcp"
                     /protein_id="HCS1722321.1"
                     /translation="MSTNPLLDQSMLPYQAPRFDRIKDCHYRPAFDEGVRQKRVEIEA
                     IVNHPAAPDFTNTLLALEQSGALLSRVTSVFFAMTAAHTNDELQRLDEAFSAELAALS
                     NDIYLNSALFARVDAVWQQRHSLGLDDESLRLVDVIHQRFVLAGAQLAEEDKARLKVL
                     NTESATLMSQFNQRLLAASKAGGLAVDDAHCLEGLSPEEMTVAAEAAREKGLEERWFI
                     PLLNTTQQPALATLRDRQTRENLFAASWTRAEKGDAHDTRAIVQRLVEIRRCQAKLLG
                     FPNYAAWKMADQMAKTPQAALSFMRGIVPPARQRVLNEQAEIQNVIDGEQGGYTVQAW
                     DWMFYAEQVRREKYALDEAQLKPYFALNTVLQEEVFWTANQLFGITFVERFDIPVYHP
                     DVRVWEIFDSDGVGMALFYGDFFARDSKSGGAWMGNFVEQSTLNETRPVIYNVCNYQK
                     PVDGQPALLLWDDVITLFHEFGHTLHGLFAVQRYATLSGTNTPRDFVEFPSQINEHWA
                     SHPRVFERYARHVDSGEKMPADLQERMRKASLFNKGYDMTELFGAALLDMRWHMLEES
                     VAEQSVAEFEQQALAAEHLDLPAVPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADDG
                     YQWFVEQGGLTRENGQRFRDAILSRGNSTDLETLYSAWRGHEPHIDTILQYRGLDH"
     gene            2528..3274
                     /gene="ydfG"
                     /locus_tag="OQP62_002816"
     CDS             2528..3274
                     /gene="ydfG"
                     /locus_tag="OQP62_002816"
                     /EC_number="1.1.1.298"
                     /EC_number="1.1.1.381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional NADP-dependent 3-hydroxy acid
                     dehydrogenase/3-hydroxypropionate dehydrogenase YdfG"
                     /protein_id="HCS1722322.1"
                     /translation="MIVLVTGATAGFGECIARRFVENGHKVIATGRRHERLQALKDEL
                     GENVLTAQLDVRNRAAIEEMMASLPAQWRDIDVLVNNAGLALGLEPAHKASVEDWETM
                     IDTNNKGLIYMTRAVLPGMVERNRGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN
                     LRTDLHGTAVRVTDIEPGLVGGTEFSSVRFKGDDEKAGKTYENTTALTPEDITEAVWW
                     VATLPAHVNINTVEMMPVTQSFAGLSVHRS"
     gene            3404..4090
                     /locus_tag="OQP62_002817"
     CDS             3404..4090
                     /locus_tag="OQP62_002817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1722323.1"
                     /translation="MTVETQLNPTQPVNQQIYRILRRDIVHCLIPPGTPLSEKEVSTR
                     FNVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISLSQVQNGCFVRQAIECAVVRRAA
                     AMITDNQCYQLAQNLHLQHIAIERKQIDDFFQLDDDFHQKLAQIADCQLAWDTIENIK
                     ATIDRVRYMSLDHVSPPEMLLRQHHDIFSALENRDGNAVESAMTQHLQEISESVQLIR
                     QENSGWFSEE"
     gene            4271..4474
                     /gene="ydfZ"
                     /locus_tag="OQP62_002818"
     CDS             4271..4474
                     /gene="ydfZ"
                     /locus_tag="OQP62_002818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative selenium delivery protein YdfZ"
                     /protein_id="HCS1722324.1"
                     /translation="MMTYDRNRNAITTGSRVMISGTGHTGIIKAIESEGLDAGQIRRG
                     KTVIVEGCEGKFAPVELIRLGMN"
     gene            complement(4541..6007)
                     /locus_tag="OQP62_002819"
                     /pseudo
     CDS             complement(4541..6007)
                     /locus_tag="OQP62_002819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460468.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
     gene            complement(6151..7530)
                     /locus_tag="OQP62_002820"
     CDS             complement(6151..7530)
                     /locus_tag="OQP62_002820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012210164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HCS1722325.1"
                     /translation="MTQIKHERSTQDLVRAAVSGWLGTALEFMDFQLYSLGAALVFHE
                     IFFPEQSAAMALILAMGTYGAGYIARIIGAFVFGKMGDRIGRKKVLFITITMMGICTT
                     LIGVLPTYAQIGIFAPVLLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSLVA
                     MGTNCGTLSATAIWAVMFFALEREQLIAWGWRIPFLASVVVMIFAIWLRMNLKESPVF
                     EKVSEGEKSPALTPASENTLGAMFTSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTL
                     LFNKSIPTDALMISSVIGFITIPLLGWLSDKYGRRLPYIILNISAIILAWPMLSIVVD
                     KTYSPGVIMAALIVIHNFAVLGLFALENITMAEIFGSRNRFTRMAISKEAGGLVAVGF
                     GPVLAGIFCNMTDSWLPILIMLVLYSCIGLISALLMPEVRDRDLSLPEDAAEATAAEK
                     LRHSATQTS"
     gene            complement(7584..8447)
                     /locus_tag="OQP62_002821"
     CDS             complement(7584..8447)
                     /locus_tag="OQP62_002821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-dependent oxidoreductase"
                     /protein_id="HCS1722326.1"
                     /translation="MKSIVIEKPNTLTIETRALLQPASGEVRIKVKLAGICGSDSHIY
                     RGHNPFAKYPRVIGHEFFGVIDAVGDNVNRDRIGERVSVDPVISCGHCYPCSVGKPNV
                     CTSLVVLGVHRDGGFSEYAVAPARNAHRIPDNIADHHAVMVEPFTIAANVTGQVNPTE
                     QDVALIYGAGPMGLTTVQALKGVYQVKTVIVVDRIEESPAARIVLMGFSSDPCEIVQQ
                     GITGKELAIYSSRLNANKFPVVIDWLNKGLIDPDKLITHTFDYQHVTDAIELFEKDQR
                     QCCKVLLTFAK"
     gene            complement(8458..9672)
                     /gene="rspA"
                     /locus_tag="OQP62_002822"
     CDS             complement(8458..9672)
                     /gene="rspA"
                     /locus_tag="OQP62_002822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001625315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="starvation-sensing protein RspA"
                     /protein_id="HCS1722327.1"
                     /translation="MKIVGAEVFVTCPGRNFVTLKITTEDGITGLGDATLNGRELSVA
                     SYLTDHLCPQLIGRDAHRIEDIWQFFYKGAYWRRGPVTMSAISAVDMALWDIKAKAAN
                     MPLYQLLGGASREGVMVYCHTTGHTIDDVLEDYARHKEQGFKAIRVQCGVPGMKTTYG
                     MAKGKGLAYEPATKGQWPEEQLWSTEKYLDFTPKLFDAVRNTFGFNEHLLHDMHHRLT
                     PIEAARFGKCIEDYRLFWMEDPTPAENQECFRLIRQHTVTPIAVGEVFNSIWDCKQLI
                     EEQLIDYIRTTITHAGGITGMRRIADFASLYQVRTGSHGPSDLSPVCMAAALHFDLWV
                     PNFGVQEFMGYSEQMLEVFPHNWTFEGGYMHPGDKPGLGIEFNEKLAAKYPYDPAYLP
                     VARLEDGTLWNW"
     gene            complement(9794..10120)
                     /locus_tag="OQP62_002823"
     CDS             complement(9794..10120)
                     /locus_tag="OQP62_002823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnfA family protein"
                     /protein_id="HCS1722328.1"
                     /translation="MLKTTLLFFVTALCEIIGCFLPWLWIKRGASVWWLLPAAASLAL
                     FVWLLTLHPAASGRVYAAYGGVYVCTALLWLRVVDGVRLTVYDWSGALIALCGMLIIV
                     VGWGRT"
     gene            10273..10614
                     /locus_tag="OQP62_002824"
     CDS             10273..10614
                     /locus_tag="OQP62_002824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1283 family protein"
                     /protein_id="HCS1722329.1"
                     /translation="MNNTLSKRLCLTAMLTLAAVVYTTSAFAETSKLVIESGDSAQSR
                     QEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRC
                     LDRRTGRVITP"
     gene            10650..11210
                     /gene="speG"
                     /locus_tag="OQP62_002825"
     CDS             10650..11210
                     /gene="speG"
                     /locus_tag="OQP62_002825"
                     /EC_number="2.3.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine N1-acetyltransferase"
                     /protein_id="HCS1722330.1"
                     /translation="MTSDYKVRLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVEL
                     SDLYDKHIHDQSERRFVVECDGENAGLVELVEINHVHRRAEFQIIISPEYQGKGLASR
                     AAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFRVEGELIHEFFINGEYRNTI
                     RMCIFQQQYLDEHKTSSSTLLKPTAQ"
     gene            complement(11251..>11892)
                     /locus_tag="OQP62_002826"
     CDS             complement(11251..>11892)
                     /locus_tag="OQP62_002826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416102.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnfC family lipoprotein"
                     /protein_id="HCS1722331.1"
                     /translation="ESFTPEMASFSNEFDFDPLRGPVKDFSQTLMSENGEVAKQVTGT
                     LSQEGCFDTLELHDLENNTGLALVLDANYYRDAQTLEKKVQLQGKCQLAALPSAGVTW
                     ETDDNGFVVSATGKEMKVEYRYDSEGYPLGKTTINSQNTLSVTAKLSTDSRKKLDYTA
                     VSRVDDRQVGNVTQSCEYDAYANPVDCRLVIVDESVKPAVSHHYTIKNRIDYY"
BASE COUNT         3041 a         3265 c         2871 g         2715 t
ORIGIN      
        1 ataatataat cctcatgatg atgttgcgtt ttaaatatga tatgtcttct catatcatgt
       61 gatacagttc taaatctagt cgccctgtgc gcagtgttaa attcatttct gcattattta
      121 cataatacca ccacatggcg gaaaatatat tttttgaaaa catcaacagc gaagcggtaa
      181 taaatctttg gcaatcaagc caccacggga aaataagtag aaaaatccga atgcacgccc
      241 tcgttatatt cagacaactt aaccccataa atttaactgg ctgtcatcag aagtgcagga
      301 ttcattttca ggcggttgtt cgacagtgcc gaacaaccgt atcagcttag tgatcgagcc
      361 cacgatattg caatatggtg tcaatatgcg gttcatgtcc acgccaggct gaataaagcg
      421 tttctaaatc agtactattc ccccgggaaa ggatagcatc acgaaaacgc tgcccgtttt
      481 cacgcgtcag gccgccctgc tctacaaacc attgataacc gtcatccgct aacatttgcg
      541 tccacaggta ggcgtagtat cccgctgcgt agccgccgcc gaagatatgg gcaaaataac
      601 tgctgcgata gcggggcggc actgccggta aatcaagatg ctcggcggcc agcgcctgct
      661 gctcgaactc agcgacagac tgctctgcta cgctctcctc cagcatatgc cagcgcatat
      721 ccagcaatgc ggcgccgaac aattcagtca tatcgtaacc tttattaaat aaactcgcct
      781 tgcgcattct ttcctgtaaa tcagcaggca ttttttcacc gctgtcgaca tgacgcgcgt
      841 agcgttcgaa cacacgtgga tggctcgccc aatgctcatt aatctgggag ggaaactcga
      901 caaagtcgcg gggcgtattg gtacctgaaa gcgtggcata gcgctgaacg gcaaacaaac
      961 catgtaacgt atgaccaaac tcatggaaga gcgtaataac gtcgtcccaa agcagcaatg
     1021 caggctgccc atcaaccggt ttctgatagt tacatacatt gtatataacg ggccgggttt
     1081 cattgagtgt ggattgctcg acaaaattcc ccatccacgc gccgccgctt ttcgagtccc
     1141 gcgcgaagaa gtcgccataa aataacgcca tgccgacacc atcggagtcg aaaatctccc
     1201 acacccgaac atcagggtgg tacaccggaa tgtcaaaacg ctcgacgaag gtgatgccga
     1261 atagctggtt ggcggtccag aaaacctcct cttgcaacac cgtatttaag gcaaaatagg
     1321 gcttcagttg cgcttcatct aacgcatatt tttcccgccg tacctgttcg gcatagaaca
     1381 tccagtccca ggcctgaacg gtgtagccgc cctgctcacc atcaatgacg ttctgaattt
     1441 ccgcctgttc attgagtacc cgctgacgcg ctggcggcac aatgccacgc ataaagctca
     1501 gtgcggcttg cggcgttttc gccatctgat cggccatttt ccatgcggca taattgggga
     1561 aacccagcag ttttgcctga cagcggcgaa tctctaccag acgctgaacg atagcgcggg
     1621 tatcgtgggc atctcctttt tccgcccgag tccatgacgc tgcgaataaa ttttcgcgag
     1681 tctggcgatc gcgcagcgta gcaagcgcag gctgttgcgt cgtattaagg agcggaatga
     1741 accagcgctc ctccaggcct ttttcacgcg ccgcttcagc agcgacggtc atttcttccg
     1801 ggcttaatcc ttccagacaa tgcgcgtcat ctaccgccag cccgcccgct ttacttgccg
     1861 ccagcagacg ctgattaaac tgactcatta aggtcgcgga ttcagtattc aatactttca
     1921 gtcgcgcttt atcctcttcg gcaagctgcg cgcctgccaa cacaaaacgc tgatggataa
     1981 catcgaccaa ccgtagcgac tcatcatcca gccccagtga gtgacgctgt tgccagacgg
     2041 catccacgcg agcgaataac gcgctattca gataaatatc gttggagagc gccgccagct
     2101 cggcagaaaa ggcctcatcc aaccgctgga gttcatcgtt agtgtgcgca gccgtcatcg
     2161 cgaaaaaaac gctggtgacg cgtgacagaa gcgccccgct ttgctccagc gccagaagcg
     2221 tattcgtaaa atcaggggcc gccggatgat tgacgatggc ctcgatttcc acgcgttttt
     2281 gccgcacgcc ctcatcaaaa gcaggacgat aatggcaatc tttgatccga tcaaaacgcg
     2341 gtgcctgata aggcaacata ctctggtcta acaaaggatt cgtcgacatt tttcactcct
     2401 gaaaataggt tgatcataag agtaagcttc cccctatgct gaccgcaacc gtgttaacca
     2461 ggattaccct ttcataaacg ccgcgtgcta tggtaataca acacaaaaag cgttgaggaa
     2521 ctgtgtgatg atcgttttag taactggagc aaccgcaggg tttggcgagt gcattgcacg
     2581 ccgttttgtt gagaatggac ataaagtcat tgccacggga cgtcgtcatg aacgcctgca
     2641 agcgttaaaa gatgagcttg gcgagaacgt attgaccgcc caactggacg tgcgcaaccg
     2701 cgcggccatc gaagagatga tggcctctct gcctgcgcag tggcgcgata ttgatgtgct
     2761 ggtcaataac gccggtctgg cgctgggtct tgaaccggcg cataaagcca gcgtagaaga
     2821 ctgggaaact atgatcgata ctaataataa aggcttaatt tatatgaccc gcgccgtgct
     2881 gccaggaatg gtcgaacgta atcgcggtca tatcattaac atcggttcaa ccgccggcag
     2941 ttggccttat gctggtggca acgtctatgg cgcgacgaaa gcctttgtgc gccagtttag
     3001 cctgaatttg cgcacggatt tacacggcac ggcggttcgc gtgaccgaca ttgaaccggg
     3061 tctggttggc ggcaccgagt tttccagcgt ccgtttcaaa ggcgacgatg agaaagcggg
     3121 taaaacctac gaaaatacca ccgcgctcac gccagaagac attaccgaag cggtatggtg
     3181 ggtggccaca ctccccgcgc atgtgaatat taataccgtt gaaatgatgc ctgttaccca
     3241 atccttcgca gggctcagcg tccaccgtag ctaaggggtt atacccggtc tgcgggccgg
     3301 gtaatccctg gcaaacgtat ctgcaaccag aaacatgatc ggtatagacc gccacggaaa
     3361 agtggtagag tatccgggtc aaccgcctaa aaagtaagaa tgaatgaccg tcgaaacgca
     3421 gcttaaccct acacagcctg tcaaccagca aatttaccgt attcttcggc gtgatatcgt
     3481 gcattgtctt atcccgcctg gcacgccgct atcagaaaaa gaggtctcaa cccgttttaa
     3541 cgtttcgcgt cagccggtgc gcgaggcttt tataaagctg gcggaaaatg ggttgattca
     3601 gatccgccct cagcgcggta gttatgtgaa taagatttcg ctttctcagg tacagaatgg
     3661 ctgctttgtt cggcaggcga tcgaatgcgc ggtggtccgc cgtgcggcgg cgatgatcac
     3721 cgacaaccag tgctatcaac tggcgcaaaa cctgcacctg caacatattg ccatcgagcg
     3781 caaacagatt gatgattttt tccagcttga tgacgatttc caccaaaaac tggcgcagat
     3841 cgccgattgc cagttagcgt gggataccat tgaaaatatc aaagcgacaa ttgaccgggt
     3901 tcgctatatg agtctggatc atgtttctcc gccggagatg ttgctgcgcc agcaccatga
     3961 tattttctcc gcgctggaaa atcgtgacgg caatgcggtt gagagcgcaa tgacccagca
     4021 tttgcaggaa attagcgaat ccgttcagct tatccgtcag gaaaacagcg gctggtttag
     4081 cgaagagtaa ccccctttaa cgtcggggtg agacgccttc tccgctttct cgccctgcac
     4141 attcccgcct aaaaagccgt gagcttgatc aaaaacaaaa aaaatccgca acgataagcg
     4201 tatttatatg tcgcccgtca tgcggggaaa cctgcgggct ttggcagtaa gtttgaaagg
     4261 agaaaacacc atgatgacat acgatcgtaa ccgtaacgca atcaccaccg gtagccgggt
     4321 catgataagc ggcacgggcc ataccgggat tatcaaagcc attgagagcg aaggtctgga
     4381 tgcaggtcaa attcgccgcg gcaaaacggt gattgtcgaa ggttgtgaag gtaaattcgc
     4441 gccagtcgaa ctgattcgtc ttggcatgaa ctgataccac tggccgctaa gaaccgctcc
     4501 ggccttcccg gtagcataat gctaccgggt ctctgttacg ctatttcaag cgctcggcat
     4561 atttcgccac gctcgctttc gcgccatatg tcagtaaact gtcataggct tcttgcactt
     4621 tttgcgtaaa ccgcgccgcc tgcggcaaat cgttgccgaa aatttcagcc attcccagca
     4681 gcgccttaac acgactggcg ccttcttcac tgtttgccac ggcgcgctga ataaccggca
     4741 atagcggatc gctgacgtcg atcgccttac cctgctcatc cacgccgcca acgtaacgca
     4801 tccaccccgc cacgcccagc gccagcaaat caaaatcgct atgattagca agatgccagc
     4861 gaacggagtc cagcatacgc tgcggaagtt tctggctgcc atccatcgca atctgccagg
     4921 tatgatgacg cagcgccgga ttacggtaac gcgcaatcaa ctgatcggca taacgctgta
     4981 aatctacccc ctggactttc agcgttggcg cctgctcgcg taacattaac gcctgcgcgg
     5041 tcagacgata gttgtcgtca tccatacagt cattaatatg ctgatagccg gcaagatacc
     5101 ccagataagc caggaatgaa tgactgccgt taagcattcg cagtttcatc tcttcaaacg
     5161 gaaccacgtc ggcgaccaac gtcgcgcccg cgttttccca ctgcggacgc cccgccacaa
     5221 acgtatcttc tatcacccac tgacgaaacg gttcacaggc aacgcccgcc ggatcgcgca
     5281 cgccggtcag ttgttcgatt ttatccagcg tctccggcgt gaccgcaggg acaatccgat
     5341 caaccatggt tgacggaaat gtcacgtttt gctcgatcca tatcgccagt tccgcatcca
     5401 cctcccgggc gtaagccgtc acaacctgac gcgtcacatg cccattttcc ggcatgttgt
     5461 ctcaggacat cacggtaaat gccggtaagc ctgcggcttt acgacgcgct aacgcttcga
     5521 caataatacc cggtgccgtt agcggttgat gcggattttg caggtcggcg gcaatcatgg
     5581 gatgttccag cagaagttga cccgtggctg gcgaatgaca ataccctttc tcggtaatgg
     5641 tcagagacac aatcgctatt tgcggttcgc acatcgccgc cagcacacgt tccagaccat
     5701 caacctgaac atgcaacgcc gctttgacga cgcccaccac acgcgccgtc caggcatccg
     5761 ccgacatctc cgccacggta tagaggttat cctgctgctt tagatcggca atctgctgtt
     5821 cgccgccaat aagattaacc tcataatagc cccagtcgct atgctgctcc gcagccagaa
     5881 tatctgtata aaccccctga tgcgcgcgat gaaacgcgcc aaaaccgaga tggaccatcc
     5941 gcgccgccag cgccgcgcga tcgtaatcag gaagcgtcgc ctttgccgat aaaagcctgt
     6001 tttgcatttt ataacctcta tattctgaaa gcggaacagt cgcagagtaa cgcctgccct
     6061 ggtgcatttg gatttacgct aattaaacaa aagtgaccgg acagcatggc cgaaaccgca
     6121 ttaacgttcc ggccataccg tcgacacgat ttaactcgtc tgggttgcgg agtggcgtaa
     6181 cttctctgcc gctgtcgctt ccgccgcatc ctcaggcaaa ctcaggtcgc gatctctgac
     6241 ctccggcatc aacagcgcag aaatcagacc aatacacgag tagagcacca gcataattaa
     6301 gatgggcagc caggaatcgg tcatgttaca aaagatccct gcgaggacgg ggccaaagcc
     6361 aaccgccacc aggcctcctg cctcttttga aatcgccatc cgggtgaagc gattacgcga
     6421 tccgaaaatt tccgccatgg tgatgttttc cagcgcaaat aatcccagca cggcaaagtt
     6481 atgaataaca atgagcgccg ccataattac gccagggcta tacgttttat ctaccacaat
     6541 agacaacatc ggccaggcga gaataatcgc ggagatattc aatattatat acggtagccg
     6601 acgaccgtat ttatcggaca accaccccaa gagtgggata gtgataaaac caattacgga
     6661 acttatcatt aacgcatcgg ttgggataga tttgttaaat aataacgtct gaactaaata
     6721 tccggcaagg aaagtttgaa taagcccgga attccccgcc tgcccaaaac gtaaaccggt
     6781 ggccagccag aaagatttgc tggtaaacat cgcgcccaat gtattttctg acgcaggcgt
     6841 taacgctggc gatttttcgc cttcgcttac tttttcgaat accggacttt ctttcagatt
     6901 cattcgcagc cagatcgcga atatcataac aacgacgctc gccaggaaag gaatacgcca
     6961 tccccaggcg atcagttgtt cgcgttcaag cgcaaagaac atcaccgccc agatcgccgt
     7021 cgcgctcaac gtaccgcaat tggtgcccat cgcgaccagc gaggaaatga tgccacgctt
     7081 tcctttcggc gcatactcgg ccagcatggt acccgcgccg gaaatttccg ccccggcgcc
     7141 cagcccctgt ataattcgca atgttaccag taatactggc gcaaaaatgc cgatttgcgc
     7201 atacgtcggc agtacgccaa tcagcgtggt gcagatcccc atcatggtga tagtaataaa
     7261 caatactttt tttcgtccga tgcggtcgcc cattttacca aaaacaaagg cgccgataat
     7321 tctggctata taacctgcac cataggtgcc cattgccaga ataagcgcca tcgcggcaga
     7381 ctgttccggg aaaaatatct catggaagac cagagccgcg cctagtgaat ataactgaaa
     7441 atccataaat tcaagcgcgg tgcctaacca gccagatacg gcagcgcgca ctaaatcctg
     7501 agtcgatcgt tcatgcttta tttgtgtcat ataggcaatc tctaagaggt aagatgcgta
     7561 ccacttactc gcaagtattt atattatttc gcaaacgtga gtaagacttt gcagcattga
     7621 cgctggtctt tctcgaaaag ctcaatcgcg tcggtgacat gttgataatc aaatgtatgc
     7681 gttatcagct tatccggatc aataagccct ttattcagcc agtcaatcac gaccgggaat
     7741 ttattggcat taagacgcga tgaataaata gccagctctt ttccggtaat accctgctgt
     7801 acaatctcac acgggtcgct ggaaaatccc atcaggacaa tgcgtgccgc aggcgattct
     7861 tcaatgcgat caacgactat gaccgtttta acctgataaa cccccttcaa cgcctgtacg
     7921 gtcgtcagtc ccatcgggcc tgcgccatag ataagcgcca cgtcctgctc ggtcggattc
     7981 acctgccccg tcacatttgc cgcaatggta aacggctcaa ccatgacggc atgatggtct
     8041 gcgatgttgt ccggtatgcg atgagcatta cgggccggcg ccaccgcata ctcgctgaaa
     8101 ccgccgtcac gatgcacgcc cagcaccacc agcgaggtac acacattggg tttaccgact
     8161 gaacaagggt aacaatgccc gcaactgatc accggatcga cggatacccg ttctcctatc
     8221 cggtcgcgat tgacgttgtc gcctaccgcg tcgatgacac cgaaaaattc atggcctatg
     8281 acacggggat attttgcaaa gggattatgt ccccgataaa tatggctgtc ggaaccgcag
     8341 atacccgcca gtttcacttt aatacgaact tcgccagatg ctggctgcag aagcgcgcgc
     8401 gtttcgatgg ttaatgtatt cggtttttcg attacgatgc ttttcatttt tcgctcctta
     8461 ccagttccac agtgtgccgt cttcaagacg ggccaccggc aaataggctg gatcgtacgg
     8521 atatttcgcc gccagttttt cattaaactc aatgcccagt cctggcttgt cgcccggatg
     8581 catatagccg ccctcgaacg tccagttatg cgggaaaacc tccagcatct gttcggagta
     8641 gcccataaac tcctgcacgc caaagttagg cacccacagg tcaaaatgta atgccgcggc
     8701 catacaaacc ggcgacagat cggacggccc atgcgaaccg gtacgcacct ggtagagcga
     8761 ggcaaaatcg gcaatgcggc gcatcccggt aataccaccg gcatgggtaa tcgtggtgcg
     8821 gatatagtca atcaattgct cttcaatgag ctgtttgcaa tcccagatac tgttaaagac
     8881 ttcgcctacg gcaatcggcg taaccgtatg ctggcggatc aggcggaagc actcctgatt
     8941 ttcagccggc gtcgggtctt ccatccagaa caaacgatag tcttcaatac atttgccaaa
     9001 gcgggcagcc tcaataggcg tcagtcggtg atgcatatcg tgcagaagat gttcattaaa
     9061 cccgaacgta ttacgcacgg cgtcaaacag ctttggcgta aaatcgagat acttttccgt
     9121 tgaccacaat tgttcttccg gccactggcc ttttgtcgcg ggctcatagg ccagtccctt
     9181 acctttcgcc atgccgtagg tggttttcat ccccggaacg ccgcactgca cgcggattgc
     9241 tttgaaccct tgctctttat gacgcgcgta gtcttccagc acatcgtcga tggtgtggcc
     9301 tgtagtatgg caatacacca tgacgccttc acgagaagcg ccgccgagta actgatacaa
     9361 cggcatattg gcggctttgg ctttaatatc ccatagcgcc atatcaactg cggaaatggc
     9421 ggacatggtg acaggaccac ggcgccagta cgcacctttg tagaagaact gccagatatc
     9481 ttcgatgcgg tgagcatccc gcccgatgag ttgtggacac agatgatcgg taaggtacga
     9541 ggccaccgag agctcgcgtc cgttcagggt ggcatccccc agaccggtga tcccgtcttc
     9601 cgtggttatt tttaaggtga cgaagttacg ccctggacac gtaacaaaaa cttcagcccc
     9661 tacaatcttc atttttattc cttacatcgc attatgggat gcaggaaatt tacccaactg
     9721 agctactacc atacaagtat atttatctaa aaagcgctgc cagatcacaa aatgttctgg
     9781 cagcgcggca atgttacgta cgcccccatc caacgacgat aatcagcatt ccacacagcg
     9841 cgatcagcgc gccgctccag tcataaaccg tgagccggac gccatcgaca acacgtaacc
     9901 acaggagcgc agtacagaca tataccccac cgtaagccgc ataaacccgc ccactcgccg
     9961 ccggatgcaa ggtcaaaagc cagacgaata acgcgagtga cgcggcagcg ggcagaagcc
    10021 accacacgct ggcgccgcgc ttaatccata gccagggaag aaaacatcca atgatttcac
    10081 agagggcggt gacaaagaaa agcagagtcg tctttagcat gagattcatt tggttacgaa
    10141 atgataagtg ataatacaac agaatatcgt tacggttatc cggccattct tgtgtatatg
    10201 ccaggcataa ggattggtgt agaatttaca ggtggtttac cgctttttcc cctctaatga
    10261 aaggatgttg tgatgaacaa tacgctgagc aaacgccttt gcctgacggc aatgcttacg
    10321 ttggcggccg ttgtatatac tacttccgca ttcgctgaaa ccagtaaact ggtgattgaa
    10381 tcgggagata gcgcacaaag tcgtcaggaa gcggcgatgg aaaaggaaca atggaacgac
    10441 actcgcagtc tgcgtcagaa agtgaatacc cgcgcagaaa aagagtggga caaagccgat
    10501 gccgcctttg ataaccgcga taaatgcgag caaagcgcca acatcaacgc ctattgggaa
    10561 cccaatactc tgcggtgtct ggatcgtcgt acaggtcgcg ttattacgcc ctgatgcagg
    10621 ataactaaaa ggaagtgtaa ggatacagta tgacaagtga ctacaaggtc agactgcgcc
    10681 cgcttgagcg tgaagattta cgatttgtcc accagcttga taataatgcc agcgttatgc
    10741 gttactggtt tgaagagccg tatgaggctt ttgtcgaact gtcggatctc tacgacaaac
    10801 acatccacga ccaaagcgaa cggcgctttg tcgtcgaatg cgacggtgaa aacgccggac
    10861 tggtagaact ggtggaaatt aaccatgtgc atcggcgggc ggaatttcag attattattt
    10921 cgccggagta ccagggaaaa ggcctggcgt cacgcgcggc caaactggcg atggattacg
    10981 gatttaccgt actcaatctc tataaattgt atttgatcgt cgataaagag aatgaaaaag
    11041 cgattcacat ctaccgtaaa ctcgggttta gagtagaagg cgagctgatt catgagttct
    11101 tcattaacgg cgaataccgt aacaccatcc gcatgtgtat cttccagcag cagtatctgg
    11161 atgaacataa aacgtccagt tctacgctcc tgaaacccac cgcgcagtaa gcgcggcgcg
    11221 gtagtcacgg agagtcgcac cgcgcccggt ttagtagtaa tcgatacgat ttttaatggt
    11281 gtaatggtgg gacactgccg gcttaacgct ctcatcgacg ataacaagcc ggcagtcaac
    11341 agggttcgcg tacgcatcat attcgcagct ctgtgtgacg ttgccgacct gtcgatcatc
    11401 cacccggctg actgccgtat aatccagctt tttacgggag tccgtggaga gttttgccgt
    11461 cacagagagc gtattctgcg agtttatggt tgtcttacct aacggataac cttcgctatc
    11521 atagcggtac tcgaccttca tctctttgcc cgtcgccgat accacaaaac cgttgtcgtc
    11581 cgtttcccaa gtcacgcccg ccgaaggcaa cgccgccagc tggcacttcc cctgtaactg
    11641 cacctttttt tccagcgtct gagcatcccg gtaataatta gcatccagca cgagcgccag
    11701 ccccgtatta ttctccagat cgtgtaactc aagcgtatca aaacagcctt cctgtgaaag
    11761 cgtaccggtg acctgcttcg ccacttcgcc attctcactc atcaacgtct ggctgaaatc
    11821 ctttaccgga ccacgtaatg gatcaaaatc aaattcgttc gaaaaactgg ccatttccgg
    11881 cgtaaaagac tc
//
LOCUS       DAJVSD010000131        11863 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.131, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000131 DAJVSD010000000
VERSION     DAJVSD010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11863)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11863)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11863
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.131"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..1792)
                     /gene="glmS"
                     /locus_tag="OQP62_002827"
     CDS             complement(<1..1792)
                     /gene="glmS"
                     /locus_tag="OQP62_002827"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HCS1722332.1"
                     /translation="MCGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMT
                     RLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEANAHPHVSEHIVVVHNGII
                     ENHEPLREALKARGYTFVSETDTEVIAHLVNWELKQGGTLRDAILRAIPQLRGAYGTV
                     IMDTRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRR
                     SVNIFDNTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQ
                     VDLSELGPNADDLLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYR
                     KSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMT
                     NAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLS
                     QDKRIELLAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPL
                     ALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFSDQDAGFVSSDNMHIIEMP
                     HVEEVIAPIFYTVPLQLLAYHVALIKGTDVD"
     gene            complement(1981..3351)
                     /gene="glmU"
                     /locus_tag="OQP62_002828"
     CDS             complement(1981..3351)
                     /gene="glmU"
                     /locus_tag="OQP62_002828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HCS1722333.1"
                     /translation="MLNSAMSVVILAAGKGTRMYSDIPKVLHTLAGKPMVQHVIDAAT
                     KLGAAQVHLVYGHGGELLKQTLKDDKLNWVLQAEQLGTGHAMQQAAPFFSDDEDILML
                     YGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPSGYGRITRENGKVTGIVEHKDATD
                     EQRQIQEINTGILIANGADLKRWLSKLTNNNAQGEYYITDIIALAYQEGREIAAVHPA
                     RISETDGVNNRLQLSRLERIYQAEQAEKLLLSGVMLRDPARFDLRGTLYCGMDVEIDA
                     NVIIEGYVTLGHRVKIGAGCIIKNSVIGDDCEISPYSVVEDAHLEAACTIGPFARLRP
                     GAELLAGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANK
                     FKTVIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVADNELVLSRVPQVHKQGWQ
                     RPVKKK"
     gene            complement(3671..4369)
                     /locus_tag="OQP62_002829"
     CDS             complement(3671..4369)
                     /locus_tag="OQP62_002829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HCS1722334.1"
                     /translation="MSFQPSFAGPQPDSRIDRTTFIRRAYLHLAVAIVGFIVLSAAWS
                     FIGGGEYALDVLLAGGRYSWLVVLGAFMLVGMLATRLADNAGTNQTQLIGLGIYVLAE
                     SLIFAPLLTVAAYINPSSIGAAAITPLLLVGGLTFTAFSIKKDFSFLRSFLTMAGFIA
                     FGAIIASVICGFSLGVWFSALMVLLCAGFILYDTSNIIHHYPTDRPAGAALHLFASIA
                     TMFWYILRIFMSRN"
     gene            complement(4598..5017)
                     /gene="atpC"
                     /locus_tag="OQP62_002830"
     CDS             complement(4598..5017)
                     /gene="atpC"
                     /locus_tag="OQP62_002830"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001251972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HCS1722335.1"
                     /translation="MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLT
                     AIKPGMIRIVKQHGHEEFIYLSGGILEVQPGSVTVLADTAIRGQDLDEARALEAKRKA
                     EEHIKSSHGDVDYAQASAELAKAIAKLRVIELTKKAM"
     gene            complement(5038..6420)
                     /gene="atpD"
                     /locus_tag="OQP62_002831"
     CDS             complement(5038..6420)
                     /gene="atpD"
                     /locus_tag="OQP62_002831"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017800291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HCS1722336.1"
                     /translation="MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNEKLVLEVQ
                     QQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEI
                     GEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNM
                     MELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRL
                     RVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM
                     GVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPA
                     VDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVA
                     RARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSI
                     DEAVEKAKKL"
     gene            complement(6447..7310)
                     /gene="atpG"
                     /locus_tag="OQP62_002832"
     CDS             complement(6447..7310)
                     /gene="atpG"
                     /locus_tag="OQP62_002832"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HCS1722337.1"
                     /translation="MAGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRP
                     YAETMRKVIGHLANGNLEYKHPYLEERDVKRVGYLVVSTDCGLCGGLNINLFKKLLAD
                     MKAWSDKGVQCELAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAY
                     DEGRLDKLYIVSNKFINTMSQVPTITQLLPLPASEDDDLKRTAWDYLYEPDPKALLDT
                     LLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQE
                     LTEIVSGAAAV"
     gene            complement(7361..8902)
                     /gene="atpA"
                     /locus_tag="OQP62_002833"
     CDS             complement(7361..8902)
                     /gene="atpA"
                     /locus_tag="OQP62_002833"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001176751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HCS1722338.1"
                     /translation="MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGL
                     ADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRG
                     LLGRVVNTLGAPIDGKGPVDNDGFSAVEAIAPGVIDRQSVDQPVQTGYKAVDSMIPIG
                     RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGAL
                     ANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLL
                     LRRPPGREAFPGDVFYLHSRLLERAARVNADYVEAFTKGEVKGKTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLESNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGG
                     IRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFA
                     AERGYLADVELAKIGSFEAALLAYVDRDHAPLMQEINQSGGYNDEIEGKLKGILDSFK
                     ATQSW"
     gene            complement(8915..9448)
                     /gene="atpH"
                     /locus_tag="OQP62_002834"
     CDS             complement(8915..9448)
                     /gene="atpH"
                     /locus_tag="OQP62_002834"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HCS1722339.1"
                     /translation="MSEFVTVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQM
                     AELLSGALAPETLAESFIAVCGEQLDENGQNLIRVMAENNRLNALPDVLEQFIHLRAA
                     SEATSEVEVTSATALSEEQLSKISAAMEKRLSRKVKLNCKIDKSVMAGVIIRAGDMVI
                     DGSVRGRLERLADVLQS"
     gene            complement(9463..9933)
                     /gene="atpF"
                     /locus_tag="OQP62_002835"
     CDS             complement(9463..9933)
                     /gene="atpF"
                     /locus_tag="OQP62_002835"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001052215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HCS1722340.1"
                     /translation="MNLNATILGQAIAFILFVWFCMKYVWPPLMAAIEKRQKEIADGL
                     ASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQANKRRAQILDEAKTEAEQERTKIV
                     AQAQAEIEAERKRAREELRKQVAILAVAGAEKIIERSVDEAANSDIVDKLVAEL"
     gene            complement(9993..10232)
                     /gene="atpE"
                     /locus_tag="OQP62_002836"
     CDS             complement(9993..10232)
                     /gene="atpE"
                     /locus_tag="OQP62_002836"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004246596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HCS1722341.1"
                     /translation="MENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPD
                     LIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAVA"
     gene            complement(10279..11094)
                     /gene="atpB"
                     /locus_tag="OQP62_002837"
     CDS             complement(10279..11094)
                     /gene="atpB"
                     /locus_tag="OQP62_002837"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HCS1722342.1"
                     /translation="MASENMTPQEYIGHHLNNLQLDLRTFSLVDPQNPPATFWTLNID
                     SMFFSVVLGLLFLVMFRSVAKKATSGVPGKFQTAIELIVGFVHGSVKDMYHGKSKLIA
                     PLALTIFVWVFLMNLMDLLPIDLLPYIAEHWLGLPATRVVPSADVNITLSMALGVFIL
                     ILFYSIKMKGIGGFAKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAG
                     ELIFILIAGLLPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVYLSMASEEH"
     gene            complement(11103..11483)
                     /gene="atpI"
                     /locus_tag="OQP62_002838"
     CDS             complement(11103..11483)
                     /gene="atpI"
                     /locus_tag="OQP62_002838"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit I"
                     /protein_id="HCS1722343.1"
                     /translation="MPVSLVSRNVARKLLFIQFLAVIASGLLFCLKDPFWGISAVCGG
                     LAVALPNMLFMIFAWRHQAHTPAKGRVSWTFAFGEAFKVLAMLVLLVVALAVLKAVFL
                     PLIVTWVLVLVVQILAPAVINNKG"
BASE COUNT         2894 a         3306 c         2912 g         2751 t
ORIGIN      
        1 ggtcaacgtc ggtgccttta atcagcgcca cgtgatacgc cagcagttgc agcggaacgg
       61 tgtagaagat aggcgcaatg acctcttcca catgcggcat ctcaatgatg tgcatgttgt
      121 cgctgctcac aaaacccgca tcctgatcgg agaagacgta caactgaccg ccacgcgcgc
      181 gaacttcttc gatgttggat ttcagtttct ccagcagttc gttgttcggc gccaccacaa
      241 tcaccggcat atcggcgtca atcagcgcca acggcccgtg tttcagctcg cctgcagcat
      301 aggcttccgc gtgaatgtaa gagatctctt tcagcttcag cgcgccttcg agcgcaatcg
      361 gatattgatc gccacgaccg aggaataacg cgtgatgctt gtcagagaaa tcttctgcaa
      421 gcagctcgat gcgtttgtcc tgcgacagca tctgctcaat acggctcggc agcgcctgta
      481 ggccatgcac gatatcatgc tcaatggacg catccagacc tttcaggcga gacagtttcg
      541 ccaccagcat caacagcacg gttaactggg tggtgaaggc tttggtagat gctacgccaa
      601 tttccgtacc cgcgttggtc atcagcgcca gatcggattc acgcaccagc gaagagcccg
      661 gcacgttaca aatggccaga gagcccaaat atcccagctc tttcgacaga cgcaggccag
      721 ccagggtatc tgccgtttcg ccagactggg agagcgtgat catcaggctg ttacggcgca
      781 cggcagattt gcgatagcgg aattcagagg cgatttcaac gtcgcacgga atacctgcca
      841 gcgattcaaa ccagtaacgg gaaaccatac cggagttgta agacgtaccg caggcgagga
      901 tctgaatatg ctcaaccttc gacaacagat catcggcgtt cggtcccagc tcgcttaaat
      961 ccacctgacc gtggctgatg cgcccggtaa gggtgttttt gatcgcgttc ggctgttcgt
     1021 agatctcttt ctgcatgtag tggcggtaaa tacctttatc gcccgcgtca tattgcagat
     1081 tggattcgat atcctgacgt tttacttccg cgccggtgtt atcgaagata tttaccgaac
     1141 ggcgagtgat ttcagcgata tcgccctctt caaggaagat aaagcgacga gtcactggca
     1201 acagcgccag ctggtcagaa gcgataaagt tttcgcccat acccaggcca atcaccagcg
     1261 ggctacctga acgggcagcc agcagcgtat ccggatggcg ggtatccatg atcaccgtgc
     1321 catatgcgcc acgcagttgc gggatcgcac gcaaaatcgc gtctcgcaga gtaccacctt
     1381 gtttcagttc ccagtttacc aggtgtgcaa tcacttcggt gtcggtttca gaaacgaagg
     1441 tatagccacg cgcttttaac gcttcacgca gcggttcatg gttttcgatg atgccgttat
     1501 gcaccaccac aatgtgttca gaaacatgcg gatgcgcgtt agcttctgaa ggttcaccgt
     1561 gcgtcgccca gcgagtgtga gcaataccgg tgccgccatg cagcgggtgt tcttccgctg
     1621 cctgagccag catctggact ttaccgaggc gacgcaggcg ggtcatatga ccttctgcat
     1681 ccaccacggc cagaccggca gagtcgtaac cacggtattc cagacgacgt aaaccttcga
     1741 gaaggatttc agctacatca cgctgcgcga tagcgccaac aattccacac atagttttat
     1801 ttcctgatta tggcattacg ccatgcgttg tcgctgacct gtatgcccgt cgttgcgggc
     1861 gccccgagcc ttgtagagag tggggttatt tttataagta ctgctcatgg agcggaggat
     1921 tattttatcc tctcatctcc ggtctgccgg atggcgctga cgcttatccg gcctacaaaa
     1981 tcactttttc ttcaccggac gctgccagcc ttgcttatgc acctgcggca cgcggcttaa
     2041 taccagttca ttgtcggcta cattacgggt gacggtagtc cctgcggcga tggtggcccc
     2101 tttaccaaca gtaaccggcg ccaccagttg ggtatcggag ccgacaaaca catcgtcgcc
     2161 aataaccgtt ttgaatttgt tcgcgccatc atagttacag gtgatggtcc ccgcgccaat
     2221 attcacgttg tcgccaattt ccgcatcgcc caggtaggtc agatggccgg ctttagaacc
     2281 tttacccaga cgcgcttttt tcatttcaac aaaattgccg acgtgagcgc ccgctaacag
     2341 ctcagcgccg ggacgcaggc gagcaaacgg gccgatggtg caggccgctt ccagatgcgc
     2401 atcttccacc acgctgtatg ggctaatttc gcagtcatcg ccaataacgc tgtttttaat
     2461 aatgcagccc gcgccgatct tcacgcggtg accgagcgtt acataacctt cgatgataac
     2521 gttagcgtca atttcgacat ccattccaca ataaagggtg ccgcggagat caaaacgtgc
     2581 cggatcgcgc aacataacgc cggataacag cagtttctcc gcctgttcgg cctggtaaat
     2641 acgctccaga cgagaaagct gtagacggtt attcacgccg tccgtttcgc tgatgcgagc
     2701 cggatgcacc gcggcgattt cccgtccttc ctgataagcc agcgcgatga tatctgtgat
     2761 gtaatattca ccctgcgcat tattgttagt cagcttagac aaccagcgtt tcaggtccgc
     2821 gccgttggcg atcagaatac cagtgttaat ttcctggatc tgacgctgtt catcagtggc
     2881 gtctttatgt tcaacgatgc cggtcacttt accgttttca cgcgtaatac ggccatagcc
     2941 gctcggatcg tccagcttca cggttaataa cccaatacca ccctgcggtt tggcatcgcg
     3001 caggcgctgt aaggtttcaa ccgaaatcag cggcacgtcg ccgtaaagca ttaaaatatc
     3061 ttcatcgtcg ctaaaaaagg gcgcggcctg ctgcattgcg tgacctgttc ccaactgttc
     3121 cgcctgaagc acccagttca gcttgtcatc tttcagggtc tgttttaaca actcgccacc
     3181 gtggccatag accagatgaa cctgtgcggc ccctaattta gtagctgcat caatgacatg
     3241 ctgcaccatg ggtttacccg ccagcgtgtg cagcacttta ggaatatcgg aatacatgcg
     3301 cgtgccttta cctgcggcaa ggatcactac gctcatagca ctatttaaca tacgcgtcct
     3361 gactgtaatt tgagaacgaa tttatactgt ttcacgttga aaatactaca tttttttcat
     3421 cgtaaaatgg aagaaggata aaacgctcac cgggataaaa tccccgcctg ctaatgaatc
     3481 attttcgttc attaccgcgc ctcttgtctc ctgaaaagta aaaacacccg cgtattggca
     3541 acgtagtccg atgtttttgc tgttttttta ctccataaat aaagaagata acgaaataaa
     3601 gcgcagggga gtcagaaaag caaaaaccag cgacagaggc cgctggtttt ccgttgcgcg
     3661 tattttttac ttaattacgc gacataaaaa tccgcaaaat ataccagaac atggtcgcga
     3721 tagaagcaaa cagatgtaat gccgcgccag cagggcgatc ggtagggtaa tggtgaataa
     3781 tgttagaagt gtcgtaaagt ataaacccgg cgcacagcag taccattagc gcagaaaacc
     3841 agacgcccag cgaaaagccg cagatgacgc tggcaataat cgcgccaaaa gcaatgaatc
     3901 cagccatagt cagaaacgag cgcagaaaag aaaagtcttt ttttatggaa aacgcggtaa
     3961 acgtcagacc gccaaccagc aacaggggcg ttattgccgc cgcgccaatg ctcgacgggt
     4021 taatatacgc cgccaccgtt aacagggggg caaaaatcag ggattctgcc aacacataaa
     4081 tccccagccc gataagttgc gtttgattag tccccgcatt atccgccaga cgggtcgcca
     4141 gcattcccac cagcataaaa gcgccgagaa caaccaacca gctatatctt ccaccagcca
     4201 gcagcacatc aagcgcatac tccccgcccc ctataaaact ccacgccgcg ctcaacacga
     4261 taaaaccgac gatggcgacg gcgagatgaa gataagcgcg acgaataaag gtagtacgat
     4321 caatccttga gtcgggttgt ggccccgcaa aggatggctg aaatgacata gtaataatcc
     4381 ctcattttat gcaataaaaa cgcatccatt ccttccttct tcgcacaatg tgcagatgcc
     4441 aatgacagaa agaaggattt aatgaaaaca gcgctgtcgc tgaaaacgca tcgccttcag
     4501 ccgcttgttt ttgtcgttgc tagtttatcg aataaaaatt gagaggataa aaaaaaccag
     4561 tccgcaatca gactggtttt atgctttcaa gccggtgtta catcgctttt ttggtcaact
     4621 cgataacgcg cagtttagcg atcgctttgg ccagttccgc agacgcctga gcgtaatcca
     4681 cgtcaccgtg cgagctctta atgtgctctt cggctttacg cttcgcttcc agggctcgcg
     4741 cttcgtcgag atcctgaccg cgaatcgcgg tatccgccag aacggtcaca ctgccaggct
     4801 gcacttccag aatgccgccg gacagataga taaactcttc gtgaccgtgc tgcttaacga
     4861 tgcgaatcat accaggctta atggcggtga gcagcggcgc gtgccccggg tagatcccca
     4921 gttcaccttc gctacccgta acctggattt tctcgaccag accggagaac atttgttgct
     4981 ccgcgctgac gacatccagg tggtaagtca ttgccatatc accctccgat taaggcgtta
     5041 aagttttttg gctttttcca cggcttcgtc gatggaaccg accatgtaga acgcctgctc
     5101 cggcaggtga tcgtattcgc cttccatgat gcctttaaag ccacggatgg tgtctttcag
     5161 ggagacgtat ttgcccggag aaccggtaaa tacttccgcc acgaagaacg gctgggacag
     5221 gaagcgctgg atcttacgcg cgcgagctac caccagttta tcttcttcag acagttcatc
     5281 cataccgagg atggcgatga tgtctttcag ttcctgataa cgctgcagga tggactgaac
     5341 gccacgcgcg gtgtcgtagt gttcctgacc aacaaccagc ggatccagct gacggctggt
     5401 ggaatccagc gggtcaacgg ccgggtagat acccagggat gcgatctgac ggctcagtac
     5461 cacagttgca tctaagtgcg caaaggtggt ggctggagac gggtcagtta agtcatccgc
     5521 aggtacgtat accgcctgta cggaggtgat agaaccggtc ttggtggagg tgatacgttc
     5581 ctgcagaacg cccatctctt ccgccagagt cggctggtaa cctaccgcgg aaggcatacg
     5641 acccagcagt gcggatactt ccgtaccggc cagggtgtaa cgatagatgt tatcgacgaa
     5701 cagcagtacg tcacgacctt cgtcacggaa tttctccgcc atggtcaggc cggtcagtgc
     5761 aacgcgcaga cggtttcccg gcggctcgtt catctggcca tacaccaggg atactttatc
     5821 gataacgttg gagtcggtca tttcatggta gaagtcgtta ccctcacgag tacgttcacc
     5881 tacgcccgca aacacagagt aaccggagtg ctcgatcgcg atgttacgga taagctccat
     5941 catgtttacg gttttaccta cacccgcacc accgaacaga ccgactttac cgcccttcgc
     6001 gaacggacac atcaggtcga taactttgat accggtttcc agcagttcct gagagtttga
     6061 taactcttcg taggaaggcg ctgcgcggtg aatcgcccaa cgctcttctt cgccgatctc
     6121 gcctttcatg tcgaccggtt cgcccaggac gttcatgata cgacccagcg tagctttacc
     6181 taccgggact tcgatcgggt gttcgagatc ttttacatcc agaccgcgac gcagaccgtc
     6241 agaagacccc atcgcgatgg tacgcacgat accgccgcca agctgctgct gaacttccag
     6301 caccagcttc tcattaccat tctgcacctc aagggcatcg tacacgcgtg gtacggcatc
     6361 ctgagggaac tcgacgtcta ccacggcgcc gattacctgg acaatctttc cagtagccat
     6421 cttaaatcct ctacgaaata acctggttaa accgcggcgg cccccgagac gatctcggtg
     6481 agttcctgag taatgctggc ctgacgagct ttgttgtata ctaactgcag ctctttaatc
     6541 aggctgccgc cattatcggt tgcggctttc atcgccacca ttcgtgcggc ctgctcgctg
     6601 gccaggtttt ctaccacgcc ctgataaacc tgagactcca cataacgacg caggagagta
     6661 tccagcagcg ctttcgggtc tggttcatac aggtaatccc aggctgtacg cttcagatca
     6721 tcatcttctg acgccggcag cggcagcagt tgagtgatcg tcggcacctg agacatggtg
     6781 ttaataaatt tgttgctgac aatgtaaagc ttgtccagac ggccttcgtc gtaggcctgc
     6841 aacatcactt taaccggacc gatcagttcg gacagagaag ggttatcccc catacctgtc
     6901 acctgagcga caacgttgcc gcctacggaa ttaaagaatg acacgccctt agagccgatc
     6961 attgcgagtt cgcactgaac gcctttatcg gaccatgcct tcatatccgc cagcagcttt
     7021 ttgaacaggt taatgttcaa gccaccgcac aaaccacagt cggtcgacac taccaggtag
     7081 cccacgcgtt taacgtcgcg ctcttccagg taggggtgct tatattccag attaccgttc
     7141 gcaaggtgac caatcacttt gcgcatggtc tctgcataag gacggctggc cgccatgcga
     7201 tcctgcgatt tacgcatttt ggaagcggcg accatctcca tcgctttagt gatcttttgc
     7261 gtgttctgga cgcttgcgat cttactacgt atctcttttg cgccggccat gagcttctcc
     7321 tcaatgcctt acggcctgcc ctaaggcaag ccgccagacg ttaccaggac tgggttgctt
     7381 tgaaggaatc gaggatgcct ttcagcttgc cttcgatttc gtcgttatag ccaccggact
     7441 ggttgatctc ttgcatcagc ggagcgtgat cacggtcgac gtaagccagc agtgcggctt
     7501 cgaagctacc gattttcgcc agttcgacat ccgccagata accacgttct gctgcgaaca
     7561 gaaccagaga ctgctgcgcg acggacatcg gcgcatactg tttctgtttc agcagttcgg
     7621 tcactttctg accgtggtca agctgtttac gggtggcatc gtcaaggtcg gatgcaaact
     7681 gagagaacgc cgccagttca cgatactgcg ccagcgcggt acgaatacct ccggacagtt
     7741 ttttcatgat cttggtctgg gctgcgccac ctacacggga taccgagata cccgggttaa
     7801 ccgcaggacg aataccggcg ttaaacaggt tagattccag gaagatctga ccatcggtaa
     7861 tggaaattac gttggtcgga acgaacgcgg aaacgtcacc tgcctgcgtt tcgataatcg
     7921 gcagcgcagt cagtgaaccg gttttccctt tcacttcacc tttagtgaag gcttcgacgt
     7981 agtcggcgtt aacacgcgca gcacgctcca gcagacgaga gtggaggtag aatacgtcgc
     8041 ccgggaatgc ttcacgtcct ggcggacgac ggagcagcag ggagatctga cggtaagcaa
     8101 cagcctgttt agacaggtca tcgtaaatga tcagcgcatc ttcaccgcgg tcacggaagt
     8161 attcgcccat tgcgcaaccg gcatacggcg ccaaatattg cagcgcagcg gattcggacg
     8221 cggtcgccac cacaacaatg gtgttagcca gcgcgccgtg ctcttccagt ttacgcacca
     8281 cgttagagat ggtggacgct ttctggccga tagcgacata gatacatttg atgccggagt
     8341 cgcgctggtt gatgatggcg tcgatagcca gcgcggtttt accggtctga cggtcaccga
     8401 tgatcagttc acgctgacca cgaccgattg ggatcatgga gtcaacggct ttatagccgg
     8461 tctgcaccgg ctgatcgaca gactgacgat cgataacgcc cggcgcaatc gcttcaacgg
     8521 cagagaagcc gtcattatca accggacctt taccgtcgat tggcgcaccc agggtgttta
     8581 ccacacgtcc cagcagaccg cggccaaccg gaacttccag gatacgaccc gtacatttaa
     8641 ccttcatgcc ttcggcaagg tcagcgtatg gacccatgac taccgcaccc acggagtcgc
     8701 gctccaggtt cagtgcgata gcgtaacggt tacccggcag ggagatcatt tcaccctgca
     8761 tacaatcggc caagccgtga atgcggataa caccgtcact aacagaaaca atagtacctt
     8821 cgttgtgagc ttcgctcacc acattgaact gagcaatgcg ctgcttgatc agttcgctga
     8881 tttcggtgga attcagttgc atgctccagt ccccttaaga ctgcaagacg tctgcaaggc
     8941 gctcaagacg gccgcgtacg ctgccatcaa tgaccatatc acccgcccgg atgataacgc
     9001 ctgccattac agacttatcg attttgcaat tcagcttcac tttgcgtgac agacgttttt
     9061 ccatcgcggc gctgattttc gaaagctgct cttcactcaa tgcggttgcc gacgtaactt
     9121 ctacctcgga ggtagcttca ctggcggcac gcagatgaat aaactgctcc agaacatccg
     9181 ggagcgcgtt cagacgatta ttttcagcca tcacccgaat caggttctga ccgttttcgt
     9241 ctaactgctc accgcagact gcgataaacg actcagcgag cgtttccggc gccagcgcgc
     9301 cagagagaag ctctgccatt tgttcgttct tggttacctc ggcggcaaac gccagcatat
     9361 cctgccagcg ctctacactt tggtgttcaa cggcaaagtc aaaagctgct ttggcgtagg
     9421 ggcgagctac cgtaacaaat tcagacatca gcccctccct ccttacagtt cagcgacaag
     9481 tttatccacg atgtcgctgt tagcagcttc atccacggaa cgttcgatga tcttctcggc
     9541 gccagcaaca gccaggatag caacttgctt acgcagctct tcacgggcac gtttacgctc
     9601 ggcttcaatt tccgcctgcg cctgcgccac gattttagta cgttcctgct ctgcttcagt
     9661 tttggcttcg tccaggatct gagcgcggcg tttgtttgcc tgctcgatga ttacctgagc
     9721 ttccgctttc gcttttttca gctggtcggt cgcgctggcc tttgcaaggt caagatcctt
     9781 atgtgctcgt tcagcagaag cgagaccgtc agcaatttct ttctgacgtt tctcgatggc
     9841 tgccattaac ggcggccata cgtacttcat gcaaaaccag acaaagagaa taaacgcgat
     9901 ggcctggccg aggattgttg cgttaagatt cacagcacaa tgcctctatc tagttaacct
     9961 tctgatattg ctcttaattc aagcaacgct tactacgcga cagcgaacat cacgtacaga
    10021 cccagaccta cagcgatcat cgggatagca tccaccagac ccataacgat aaagaactga
    10081 gtacgcagca gaggaatcag atcaggttga cgcgccgcgc cttccaggaa tttacccccg
    10141 aggatgccga taccgatcgc agcaccgatt gccgccagac ccatcatcac agcggcagcc
    10201 atgtacagca gatccatatt caggttttcc atgacagtct ccagtttgtt tcagttaaaa
    10261 cgtagtagtg ttggtaaatt aatgctcttc ggacgccatc gacagataga caatcgtcag
    10321 aaccatgaaa atgaaggctt gcagcgtaat aatcaggatg tggaaaatgg cccacggcac
    10381 attcagaatc cactgtgacc accacggcaa cagaccagca atcagaatga aaatcagctc
    10441 accggcatac atgttgccga acagtcgcag accgagagaa accggtttgg acagcagact
    10501 taccccttca aggattaagt tgacaggaat aaacgcccag tgattgaacg gctgcagcgt
    10561 caactctttt gcgaagccgc cgatgccttt cattttgatg ctgtagaaca gaataaggat
    10621 gaatacgccc agcgccatcg acagggtgat gttgacgtca gcagacggca ccacgcgcgt
    10681 tgccggcaga cccagccaat gctcagcgat atacggcagc aggtcgatag gcagtaagtc
    10741 catcaggttc ataaggaata cccagacgaa aatcgtcagg gccagcggcg caatcagctt
    10801 gcttttgcca tggtacatgt ctttgacgct gccatgcaca aagccgacta tcagctcaat
    10861 cgcggtctga aacttgcctg gcacgccgct ggtcgctttt ttagcaacgc tacggaacat
    10921 caccagaaac aacagaccca gcaccaccga gaagaacatg gagtcaatat tgagcgtcca
    10981 gaaggtggct ggggggttct gcggatccac cagcgagaaa gtacgcaggt ccagctgaag
    11041 gttattcaga tggtgtccta tgtattcctg cggcgtcata ttttctgaag ccatgatgcc
    11101 ttttaccctt tgttgttaat tacagccggc gccagtatct gaaccaccag caccaaaacc
    11161 cacgtaacga tcagcggcaa aaacaccgcc tttaaaaccg ccaacgccac caccagtaaa
    11221 accagcatcg ctaacacctt gaaggcttca ccgaaggcga aagtccagga cacgcggccc
    11281 ttagcaggtg tatgcgcctg gtgacgccag gcaaatatca taaacaacat attaggcagt
    11341 gccactgcca atcccccaca tactgcggag atgccccaga aggggtcttt gaggcaaaac
    11401 agcaatccac ttgctattac cgccagaaac tgaatgaaca gaagcttacg agcaacgttt
    11461 cgactcacga gcgacacagg catcacgttt ttactcctgc tcacttcgag gtatgccgcg
    11521 tgtcgtataa aacgttcttt aagacttaga gtcaagcatc aaaaagcggt caaattatac
    11581 ggtgcgcccc cgtgatttca aacaataagt agccaaaagg tgaataaatg tttaaatatt
    11641 tttctctggc ccgcattttt aacttttagc taaagtgtga acgatcgtac aaaactgcaa
    11701 atagcgcgaa aacactggcg ataaagcgtg caccagatca cacattaaac atattcatgc
    11761 ttacgcaatt catttacgtg tcaattcatg ccttttcatc tttttgatat ttaagcgtaa
    11821 aaccaggtac tgttttaaaa ataccagctt acaccttaaa aac
//
LOCUS       DAJVSD010000132        11831 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.132, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000132 DAJVSD010000000
VERSION     DAJVSD010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11831
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.132"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            308..1342
                     /gene="rhaT"
                     /locus_tag="OQP62_002839"
     CDS             308..1342
                     /gene="rhaT"
                     /locus_tag="OQP62_002839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose/proton symporter RhaT"
                     /protein_id="HCS1722344.1"
                     /translation="MSNAITMGIFWHLIGAASAACFYAPFKQVKQWSWETMWSVGGIV
                     SWLILPWTISALLLPDFWAYYGQFNLSTLLPVFLFGAMWGIGNINYGLTMRYLGMSMG
                     IGIAIGITLIVGTLMTPIINGNFDVLIHTEGGHMTLLGVFVALIGVGIVTRAGQLKER
                     KMGIKAEEFNLKKGLLLAVMCGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYV
                     VIMGGGALVNLGFCFIRLAKVQNLSIKADFSLARPLIISNILLSALGGLMWYLQFFFY
                     AWGHARIPAQYDYMSWMLHMSFYVLCGGLVGLVLKEWKNAGRRPVAVLSLGCVVIIIA
                     ANIVGLGMAS"
     gene            complement(1339..2187)
                     /gene="rhaR"
                     /locus_tag="OQP62_002840"
     CDS             complement(1339..2187)
                     /gene="rhaR"
                     /locus_tag="OQP62_002840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator RhaR"
                     /protein_id="HCS1722345.1"
                     /translation="MANQLILLKKDFFTDEQQAVTVADRYPQDVFAEHTHEFCELVMV
                     WRGNGLHVLNERPYRITRGDLFYIRAEDKHSYTSVNDLVLQNIIYCPERLKLNVNWQA
                     MIPGFQGAQWHPHWRLGSMGMNQARQVINQLEHESNGRDPLANEMAELLFGQLVMTLK
                     RHRYATDDLPATSRETLLDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQTG
                     MTINQYLRQVRICHAQYLLQHSPLMVSEISMQCGFEDSNYFSVVFTRETGMTPSQWRH
                     LSNQSD"
     gene            complement(2340..3176)
                     /gene="rhaS"
                     /locus_tag="OQP62_002841"
     CDS             complement(2340..3176)
                     /gene="rhaS"
                     /locus_tag="OQP62_002841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator RhaS"
                     /protein_id="HCS1722346.1"
                     /translation="MTVLHSVDFFPSGKAPVAIEPRLPQAAFPEHHHDFHEIVIVEHG
                     TGIHVFNGQPYTISGGTVCFVRDHDRHLYEHTDNLCLTNVLWRSPDAFQFLAGLDQLL
                     PQEQDGYYPSHWRVNQSVLQQVRQLVGLMERAGDGMDAPAVANREILFMQLLVLLRRS
                     SLMEGATNNDAKLNQLMAWLEDHFAEEVCWEAVAEQFSLSLRTLHRQLKQHTGLTPQR
                     YLNRLRLIKARHLLRHSDHSVTEIAYRCGFGDSNHFSTLFRREFNWSPRDIRQGRDAI
                     IQ"
     gene            3464..4933
                     /gene="rhaB"
                     /locus_tag="OQP62_002842"
     CDS             3464..4933
                     /gene="rhaB"
                     /locus_tag="OQP62_002842"
                     /EC_number="2.7.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulokinase"
                     /protein_id="HCS1722347.1"
                     /translation="MTFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQK
                     TDGFDTWDIDSLEKDIRLGLKKVCNEGILIDSIGIDTWGVDYVLLDKQGQRVGLPVSY
                     RDNRTTGIMPQALVQIGKSEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLM
                     PDYFSYRLTGEMNWEYTNATTTQLVNINTDDWDDTLLAWTGAKKSWFGRPSHPGNVIG
                     DWICPQGNRIPVVAVASHDTASAVIASPLANKHSAYLSSGTWSLMGFESKKPYTTDEA
                     LAANITNEGGAEGRYRVLKNIMGLWLLQRVLKERRITDLPVLIAQTEALPACRFLINP
                     NDDRFINPDDMRAEIQAACRETDQPVPVSDAELARCIFDSLALLYADILHELANLRGE
                     KFTQLHIVGGGCQNALLNQLCANACGIRVMAGPVEASTLGNIGIQLMTLDELNNVDDF
                     RQVVSANYDLTTYIPNPDSEIARHVAQFQPKRQTKELCA"
     gene            4930..6189
                     /locus_tag="OQP62_002843"
     CDS             4930..6189
                     /locus_tag="OQP62_002843"
                     /EC_number="5.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose isomerase"
                     /protein_id="HCS1722348.1"
                     /translation="MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDD
                     VAGFENPEGSLTGGIQSTGNYPGKARNATELRADLEQALRLIPGPKRLNLHAIYLESD
                     TPVARDQIKPEHFKNWVEWAKANRLGLDFNPTCFSHPLSADGFTLSHPDAKIRQFWID
                     HCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLEALDEVISEKFDP
                     AHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAA
                     MLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHNLFDRVHIGLDFFDASINR
                     VAAWVIGTRNMKKALLRALLEPTDQLRQLEASGDYTARLAMLEEQKSLPWQAVWEMYC
                     QRHDTPAGSQWLDSVRTYEKEILSKRS"
     gene            6247..7073
                     /gene="rhaD"
                     /locus_tag="OQP62_002844"
                     /pseudo
     CDS             6247..7073
                     /gene="rhaD"
                     /locus_tag="OQP62_002844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462926.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulose-1-phosphate aldolase"
     gene            7200..8348
                     /gene="fucO"
                     /locus_tag="OQP62_002845"
     CDS             7200..8348
                     /gene="fucO"
                     /locus_tag="OQP62_002845"
                     /EC_number="1.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactaldehyde reductase"
                     /protein_id="HCS1722349.1"
                     /translation="MSFMLALPKISLHGAGAIADMVNLVANKQWGKALIVTDGQLVKL
                     GLLDSLFSALDEHQMSYHLFDEVFPNPTEELVQKGFAAYQSAECDYIIAFGGGSPIDT
                     AKAVKILTANPGPSTAYSGVGKVKNAGVPLVAINTTAGTAAEMTSNAVIIDSARKVKE
                     VIIDPNIIPDIAVDDASVMLEIPASVTAATGMDALTHAVEAYVSVGAHPLTDANALEA
                     IRLINVWLPKAVDDGHNLEAREQMAFGQYLAGMAFNSAGLGLVHALAHQPGATHNLPH
                     GVCNAILLPIVENFNRPNAVARFARIAQAMGVETRGMSDEVASQEAINAIRTLSKRVG
                     IPEGFSKLGVTKEDIEGWLDKALADPCAPCNPRTASRDEVRELYLEAL"
     gene            8345..8659
                     /gene="rhaM"
                     /locus_tag="OQP62_002846"
     CDS             8345..8659
                     /gene="rhaM"
                     /locus_tag="OQP62_002846"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HCS1722350.1"
                     /translation="MIRKAFVMQVNADAHEEYQRRHNPIWPELEAVLKSHGAHHYAIY
                     LDQERNLLFATVEIESEERWNAVASTDVCQRWWKHMRDVMPANPDNSPVSAELKEVFY
                     LQ"
     gene            complement(8748..9296)
                     /locus_tag="OQP62_002847"
     CDS             complement(8748..9296)
                     /locus_tag="OQP62_002847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004855902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1722351.1"
                     /translation="MTQPISVIARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGN
                     GNPSLETLWSLCVALDIPFARLLEPQVQKTQVIRRGEGTKVVAEQAHYQAILLAACPP
                     GARRDIYLLLTQPGADRISHPHPPGSVEHIIVTQGKALVGLTEAPEELAEGDYICYPG
                     DQAHIFKALEPDTQAILVAEQN"
     gene            9397..10056
                     /locus_tag="OQP62_002848"
     CDS             9397..10056
                     /locus_tag="OQP62_002848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HCS1722352.1"
                     /translation="MKHYFSCLKGDTIKAIFLVCLAVGVVGMSYGSLAMAYGFPLWVP
                     FVLSIFVLAGASEFMFIGIVASGGNPLAAAAAGLLVNARHVPFGVTVRDLVGTRAASF
                     FGCHIMNDESVVFGLSQKTPEQRKAAYWLCGLGVALFWPIGTLIGAGVGKLLPAPETI
                     GLDAVFPAILLALVIPAFKNRTTLIRGCSGAALSLAAVPFVAAGLPVLLSLLGLLARK
                     K"
     gene            10056..10379
                     /locus_tag="OQP62_002849"
                     /pseudo
     CDS             10056..10379
                     /locus_tag="OQP62_002849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462921.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
     gene            complement(10722..11822)
                     /locus_tag="OQP62_002850"
     CDS             complement(10722..11822)
                     /locus_tag="OQP62_002850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462920.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3829 domain-containing protein"
                     /protein_id="HCS1722353.1"
                     /translation="MKRNLLSSAIIIALMTLGATGCDDNNVKTEATPAASSQPATPAP
                     SQTPETQSGESPAQPPAAKPETATQPPAAKPETPAQPEVDAEEVYSEKMDVYIDCFNK
                     LQLPVQHSLARYADWVKDFKKGPTGKESLVYGIYGITESYITNCQKEMKQVAALTPLL
                     EPIDGVAVSYIDSAAALGNTINEMEKYYTQENYKDDGFAKGKALHQTLLKNIEDFKPI
                     SEKYHEAIQEINDKRQLTQLKKIEEAEGKTFNYYSLAVMISAKQINKVISADTFDAEA
                     MMKKVAELETMIAQLKEVNTDGRNSSFISSAADYQLQAKKYIRRIRDNVEYSDFEKKR
                     VQDPATGWMVADSYPASLRSYNEMVDDYNRLR"
BASE COUNT         2700 a         3210 c         3095 g         2826 t
ORIGIN      
        1 tcagactatt cccattatgt gatctcacgc agcgttttct ttgcattact gccagctaag
       61 tcgtttcgtg tcgttatgat gaaggtattt tagaaaacaa atattaccca ctgatttaaa
      121 taacatccag acggtcacga tgcgctccga cttttttaaa acgtgaagtt aatcacttca
      181 ttaacgtgct gattgccaga atacacccaa cggcggcaat cgttataagg ttaccaggct
      241 gcgtaatttt taaactcatg caaacggaag gggtatcccg tccataaaaa ataatgagga
      301 acatgtcatg agtaacgcga ttacgatggg tattttctgg catctgatag gggcggccag
      361 tgcagcctgc ttctatgccc cgttcaagca agtgaaacag tggtcatggg aaaccatgtg
      421 gtcagtgggc ggcatcgtct catggcttat tctgccgtgg acaattagcg ctctgttact
      481 gcctgatttc tgggcctatt atgggcagtt taacctctcc acccttttac cggtttttct
      541 gttcggcgcc atgtggggca tcggcaatat taactacggc ctgaccatgc gttatctcgg
      601 catgtcgatg ggtatcggca tcgctatcgg cattacgctt atcgtcggca cgctgatgac
      661 gcctatcatc aacggtaact tcgatgtatt aatccatacc gaagggggac acatgacgct
      721 acttggcgtt tttgtcgcgc tgatcggcgt cgggattgtg acgcgcgccg gacagttaaa
      781 agaacgcaaa atgggcatta aagcggagga gttcaatctg aagaaagggc ttctgctggc
      841 agtgatgtgc ggtattttct cggcggggat gtcttttgcc atgaacgccg cgaaaccgat
      901 gcatgaagct gctgccgcgc ttggcgttga cccgctctat gtcgcgctgc cgagttacgt
      961 ggtgattatg ggcggcggcg cgctggtgaa cctcggtttc tgttttatcc gcctggcaaa
     1021 agtgcaaaat ctgtcgataa aagccgactt ctcgctggca aggccattga ttatcagcaa
     1081 tattctgctg tccgcgcttg gcggtctgat gtggtatttg cagttctttt tctatgcctg
     1141 gggtcacgcg cgcattcccg cgcaatatga ctacatgagc tggatgctgc acatgagctt
     1201 ctatgtgctg tgcggggggc ttgtcggtct ggtgctaaaa gagtggaaaa atgctggccg
     1261 ccgtcccgtt gccgtattaa gcctcggctg cgtggtaatt attatcgcgg cgaatattgt
     1321 cggtttaggc atggccagtt aatcgctttg attactgaga tggcgccatt ggctcggcgt
     1381 catcccggtt tcccgcgtga acaccactga aaaataatta ctatcttcaa agccacactg
     1441 catcgaaatc tcgctaacca tcagcgggct atgctgaagc agatactgcg cgtggcaaat
     1501 acggacctgg cgtaaatatt gattaatcgt catcccggtt tgggcgcgaa actgctgccg
     1561 cagcacccgc tcgctgcatt gttcctgctg gcaaaacgca tccagcgcaa agggacactc
     1621 aaggctatta gccaaagcgg taattaattt atccaacagg gtttctcggg aggttgccgg
     1681 aagatcgtcg gtcgcgtagc gatgccgttt taacgtcatt accagttgac caaacagcaa
     1741 ttccgccatc tcattcgcca gcggatcgcg tccattactc tcatgttcaa gctggttaat
     1801 gacctgccgc gcctgattca ttcccatact gcccagccgc cagtgaggat gccactgcgc
     1861 tccctgaaag ccgggaatca tcgcctgcca gtttacattg agtttcaaac gctccgggca
     1921 gtaaataata ttttgcagca ccagatcgtt aacggaagta taggagtgtt tgtcttcagc
     1981 acgaatgtaa aacagatcgc cgcgggtaat tctgtatggg cgctcattaa gaacgtgtag
     2041 gccattgccc cgccagacca tcaccagttc acaaaactca tgcgtatgtt ccgcaaaaac
     2101 atcctgtgga tagcgatcgg caaccgtaac ggcctgctgc tcatcagtaa aaaaatcttt
     2161 tttcaaaagg attaactgat ttgccaccgc agcacctcat gttgaatgct tgccggctgg
     2221 cgctacgctt attctgtcta ccgctcgccg ccgtaggcca ggtaaggcgc agccgccatc
     2281 cggtattaaa gggtataatt atcagcatat tggcgacgaa aacgttgata gcgttcgcgt
     2341 tactggatta tcgcatcgcg tccctgacgg atatcccgcg gcgaccagtt aaattctcgg
     2401 cgaaacagag tcgaaaagtg gttactgtcg ccaaaaccgc agcggtacgc gatttctgtc
     2461 acgctatgat cgctatggcg caataaatgc cgggctttga tcaaacgcag gcgattaagg
     2521 taacgttgcg gcgtcagccc ggtatgctgt ttaagctgac gatgcagcgt acgtagcgac
     2581 agcgaaaact gttcagctac cgcctcccag cagacctcct ccgcaaaatg gtcttccagc
     2641 catgccatca gttggttgag tttggcgtcg ttattggtcg cgccttccat caggctactg
     2701 cggcgtaaca acaccagtag ttgcataaac aaaatttcgc gattcgccac ggcaggcgca
     2761 tccatgccgt ctccggcgcg ctccatcaga ccgaccaact ggcgcacctg ctgcaacaca
     2821 ctctgattca cccgccagtg agaaggatag taaccatcct gctcctgcgg cagcaattga
     2881 tccaaccccg ccaggaactg gaaggcgtcc ggtgaacgcc acagtacatt cgtcaggcat
     2941 aggttgtcgg tatgttcata taaatgccgg tcgtgatcgc gaacaaaaca cacggtaccg
     3001 ccgctgatgg tatacggctg cccgttgaat acatgaatgc ccgtaccgtg ttccacaatc
     3061 acgatttcat gaaaatcatg atgatgttca gggaaagcgg cttgcggcag acgaggttca
     3121 atcgccacgg gcgctttacc tgatggaaaa aaatccacgc tatgcagtac ggtcatggtt
     3181 gcttcctcct gaattcaaca tgtccgaata gtaattaagg gttatcggcc tcaccttaaa
     3241 tttttgacgc taaagcgcgc aaacatggtc tttttttcaa gaaaaggcgg gaaaaagcgg
     3301 gaaatgcgga cgacatcaca ccggcctatt agtagaaact gtgaacgcta tcacgttcat
     3361 ctttgccttg ttgccagcgg ctcattttcc tgtcagtaac gagaaggtag gtctttgagg
     3421 gcttttttag actgtgcgca atgactctaa gaaggacctg attatgactt ttcgccattg
     3481 tgtcgcggtt gatctcggcg catccagcgg gcgcgtgatg ctggcgcgtt acgacagcaa
     3541 acaccgtacc ctgacgctac gtgaaattca ccgttttgtg aactgcctac aaaaaacaga
     3601 cgggtttgac acctgggaca tcgacagtct ggaaaaggat atccgtcttg gtctgaagaa
     3661 agtctgcaat gaaggcattc ttatcgacag catcggcatc gacacctggg gcgtcgatta
     3721 tgtcctgctg gataaacaag gtcagcgtgt cggcctgccg gtctcctacc gcgataaccg
     3781 taccacgggc atcatgccgc aagcgctggt ccagatcggc aaaagcgaaa tctatcgccg
     3841 cagcgggatt cagtttctgc cgtttaacac catctatcag ctacgcgcgc tgacgaaaca
     3901 acagcctgag ttaacggcgc aggtcgctca tgcgctgctg atgcctgatt atttcagcta
     3961 ccgcctgacc ggtgaaatga actgggagta caccaacgcc acgaccaccc agttggtcaa
     4021 tatcaatacc gatgactggg acgataccct gctggcgtgg accggcgcga aaaagagctg
     4081 gttcggccgc ccctcgcacc ctggcaatgt tatcggcgac tggatttgcc cgcagggcaa
     4141 ccgtattccg gtggtagccg tcgccagcca cgataccgcc agcgccgtta ttgcctctcc
     4201 gctggcaaat aaacatagcg cttacctgtc ttcaggcacc tggtcgttga tgggttttga
     4261 aagcaaaaaa ccctacacca ctgatgaggc gctggccgcc aatatcacca acgaaggcgg
     4321 cgcggaaggg cgttatcggg tactgaaaaa cattatgggt ttgtggctgc tccagcgcgt
     4381 gctgaaagaa cggcgcatta ccgatctgcc tgtgcttatc gcccaaacag aagcgctgcc
     4441 ggcctgccgt ttcctgatta acccgaatga cgatcgcttt atcaatcctg acgatatgcg
     4501 cgccgaaatc caagccgcct gtcgcgagac cgaccagccc gttcccgtca gcgatgccga
     4561 actggcgcgc tgcattttcg acagtctggc gctgttgtat gccgacattc tgcacgaact
     4621 ggcaaatctg cgcggcgaaa aatttaccca actgcatatt gtcggcggcg gatgccaaaa
     4681 cgcgctactc aaccagttgt gcgccaatgc atgtggcatt cgcgtgatgg ccgggccggt
     4741 tgaagcctcc acccttggca atattggtat tcagcttatg accctcgacg aattaaacaa
     4801 cgtcgatgat ttccgtcagg tcgtcagcgc taactacgac ctgacaacct atatccctaa
     4861 tcctgatagt gaaattgccc gccacgttgc gcagtttcaa cccaaacgac agacaaagga
     4921 gctttgcgca tgaccactca actggaacaa gcctgggaac tggcaaaaca acgtttcgcc
     4981 gcagtaggta ttgatgtcga ggaggcgctg cgccagctcg atcgcctgcc ggtttccatg
     5041 cactgctggc agggcgacga tgttgccgga ttcgagaacc cggaaggttc gctgacgggc
     5101 ggaattcaat cgaccggcaa ctatccgggc aaagcgcgta acgccaccga actgcgcgcc
     5161 gatctggaac aggcgctgcg tctgatccca ggccccaaac gtctgaacct gcatgcgatc
     5221 tatctggaat ccgatacgcc ggttgcccgc gaccaaatca aaccggagca ttttaaaaac
     5281 tgggtggagt gggcgaaagc gaaccgactg gggctggatt tcaaccccac ctgtttttct
     5341 catccactga gcgctgacgg ttttaccctc tctcatccag acgcgaaaat tcgccagttc
     5401 tggatcgatc actgcaaagc cagccgccgc gtctcggcat actttggtga gcagctcggt
     5461 acgccgtcgg tgatgaacat ctggattccg gacggcatga aagacattac cgtcgaccgt
     5521 ttagccccgc gccagcgcct gctggaagcg ctggatgagg tcattagcga gaaattcgac
     5581 ccggcgcacc acatcgacgc cgttgagagc aaactgtttg gcatcggcgc ggaaagctac
     5641 accgtcggct ccaatgagtt ctacatgggc tacgccacca gccgtcagac cgcgctgtgt
     5701 ctggatgcgg gccacttcca tcccactgaa gtgatttccg acaaaatttc cgccgccatg
     5761 ctctatgtgc cacggctgct gctgcacgtc agccgcccgg tacgctggga tagcgaccac
     5821 gtggtgctct tggacgatga aacccaggca attgccagcg agatcgtccg tcataacctg
     5881 ttcgaccgtg tgcatatcgg cctggatttc ttcgacgcct ctatcaaccg tgtcgccgcg
     5941 tgggttatcg gtacccgcaa catgaaaaaa gcgctactgc gcgctctgct ggaacccaca
     6001 gatcaactgc gtcagcttga ggccagcggc gattacaccg cgcgtctggc gatgctggaa
     6061 gagcaaaaat ctctgccgtg gcaggccgtc tgggaaatgt attgccagcg tcacgacacg
     6121 ccggctggca gccagtggct ggacagcgtt cgcacctacg aaaaagagat cctgagcaaa
     6181 cgtagctgac agcgacacct gatctgtagg ccggataacc ttcgggcaat aaatgggaac
     6241 acgaatatgc aaaatattac cgattcctgg tttgtccagg gcatgattaa agccacgtct
     6301 gatgcgtggc tgaaagggtg ggacgagcgt aatggtggca acctgacgct gcgcctggat
     6361 gaagcagaca tcgcgccatt tagcgccgat ttccacgaaa aaccacgcta tatcacgcta
     6421 agtcaactca tgccgctgct ggcgaataca ccgtttatcg ttaccggctc cggcaaattc
     6481 ttccgcaacg ttcagctcga tccggcagcc aatttaggcg tggtcaaaat cgacagcgac
     6541 ggcgctggct accacattct gtggggctta acccacgacg cggtacccac ctctgaactc
     6601 ccggcgcact tcctctccca ctgcgaacgc atcaaagcca cccacggcaa agaccgcgtc
     6661 attatgcatt gccatgcgac taacctgatc gccctcacct acgtactgga aaacaacact
     6721 gcgctgatca cccgcaaact gtgggaaggc agcaccgaat gcctggtggt attcccggac
     6781 ggtgtcggca ttctgccgtg gatggtgcca ggcccgatga aatcggccaa gccaccgcgc
     6841 aagaaatgca gaaacattcg ctggtactgt ggccgttcca cggcgtgttc ggaagcggac
     6901 ctacgctgaa tgaaaccttc ggtttgatag ataccgcaga gaaatccgct gaggtattag
     6961 tcaaaatcta ttcgatgggc ggtatgaagc agaccatcac gcgcgaagaa ctggtcgcac
     7021 tcggcaaacg atttggcgtg acaccgctgg ccagcgccgt agagctgtac tgatacctcc
     7081 caactcaacg ccggatgcgg ctttgcctta tccggcctac aggtcggtgc gcattttacc
     7141 gtaggcccga taagcgtagc gccatcgggc aacagggaat ttttttaagg agaatagtga
     7201 tgagctttat gttggcactg ccaaaaatta gcctgcatgg cgctggagcg attgccgata
     7261 tggtgaacct cgtggcgaat aagcaatggg gcaaagcgct gatcgttacc gatggtcaac
     7321 tggtaaagct gggcctgctg gatagcctgt ttagcgcact ggatgaacat caaatgtctt
     7381 accacctgtt tgatgaggtg ttcccaaacc cgacagaaga gctggtgcag aaaggttttg
     7441 cggcgtatca gagcgcagaa tgtgactaca ttatcgcctt cggcggcggc agcccgatcg
     7501 ataccgcaaa agcggtgaaa attctgaccg ccaacccagg tccatctacc gcctactccg
     7561 gcgtcggcaa agtgaaaaac gccggcgtac cgctggtagc gattaacact acggcaggta
     7621 ccgcggcaga gatgaccagc aacgcggtga ttatcgactc tgcccgtaag gtcaaagagg
     7681 tgatcatcga cccgaatatc atcccggata ttgccgtgga tgacgccagc gtcatgctgg
     7741 aaatcccggc gtctgtgacc gccgcaaccg gcatggatgc cctgacccat gcggtggaag
     7801 cctatgtctc cgttggcgcg catccgctca ccgacgctaa cgcgctggaa gcgattcgct
     7861 taatcaatgt gtggctaccg aaagcggttg acgatggtca taacctcgaa gcccgtgagc
     7921 aaatggcatt cggccagtac ctggcgggta tggcgttcaa cagcgccggt ttggggctgg
     7981 ttcacgcgct ggcgcaccag ccgggcgcaa cccacaacct gccgcacggc gtctgcaacg
     8041 ctatcctgct gccaattgtc gagaacttta accgtccgaa cgccgtcgcg cgttttgccc
     8101 gcatcgcaca ggcgatgggc gtggagacgc gcggtatgtc tgacgaagtc gcaagtcagg
     8161 aagcgattaa cgctatccgt acgctgagca aacgcgtcgg cattccagaa ggtttcagca
     8221 agctgggcgt cacaaaagaa gatatcgaag gctggctgga taaagccctc gccgacccgt
     8281 gcgcgccgtg taacccgcgc accgccagcc gcgatgaagt tcgcgagctg tacctggagg
     8341 cgttatgatc cgcaaagcct ttgtgatgca ggtaaatgcc gacgcgcacg aggagtatca
     8401 gcgtcgtcat aacccaatct ggccggagct ggaagccgta ttaaaatctc acggcgcgca
     8461 tcactacgcg atttatctcg atcaggagcg caatctgctg ttcgccaccg ttgagattga
     8521 atccgaggag cgctggaacg ccgttgccag caccgacgtt tgccagcgtt ggtggaaaca
     8581 tatgcgtgac gttatgcccg cgaatccgga taacagcccg gtcagcgcag agctaaaaga
     8641 ggtgttctat ctgcagtaag tcgtgtgccc gatggcgcaa gcttaccggg cctacggttt
     8701 tattttttgt cggccggata aggcggttac gccgccatcc ggcaatttca attctgctcc
     8761 gctaccagga tagcctgagt atccggttcc agcgctttaa agatatgcgc ctggtcgccg
     8821 ggataacaaa tgtaatcgcc ctccgccagc tcttccggcg cctcggttaa gccgacgagg
     8881 gcttttccct gcgtaacaat aatatgttcc accgaccccg gcggatgcgg atgagagatc
     8941 cggtcggccc ccggctgcgt caacagcaga tagatatcac gccgcgcgcc gggcggacac
     9001 gccgccagta atatcgcctg ataatgcgcc tgctccgcca cgactttggt gccttctccg
     9061 cggcgaatca cctgcgtttt ttgtacctgc ggctccagca gcctggcaaa gggaatgtcg
     9121 agcgcgacgc atagcgacca tagcgtctcc aggctggggt tgccgttccc tgcttccagt
     9181 tgtgaaagcg tagatttagc gatgcctgcg cgccgcgcaa tctccgccag cgacagtccg
     9241 gtttgctggc gttcgcgtac caggcttctg gcaatgacgc taataggttg tgtcataaag
     9301 catccaacgt tcactataac gaacgaaatg ttcgtcttgt aaagcaaatc tgttccgttc
     9361 attataatga aaattcgttc gatatgacta aagaagatga aacactattt ttcctgtctc
     9421 aagggagaca cgataaaagc gatattttta gtgtgcctgg ccgtgggcgt cgtcggcatg
     9481 tcctatggct cactggcgat ggcctacggt ttcccactgt gggtgccgtt tgtcctctct
     9541 atttttgtgc tggcgggcgc gtccgaattt atgtttatcg gcattgttgc cagcggcggc
     9601 aatccgttag cggcggcggc ggcaggacta ctggtgaatg cgcgccacgt gccgtttggc
     9661 gtaacggtgc gcgatttggt tggcacccgc gccgccagct ttttcggctg ccatatcatg
     9721 aatgatgaga gcgtggtgtt cggcctgtcg caaaaaacac ccgaacaacg taaagccgcc
     9781 tactggctat gcggtctggg cgtcgcccta ttctggccga ttggcacact gattggcgca
     9841 ggtgtcggca aactgctccc ggccccagaa accatcggtc tggacgccgt attcccggca
     9901 atcttactgg cgctggtgat cccggcgttt aaaaaccgca ccacattgat tcgtggttgc
     9961 agcggcgccg cgctgtcgct tgccgccgtt ccctttgtgg ctgccggatt gccggtgttg
    10021 ctttcgctgc ttggcctact ggcgaggaaa aaataatggg caatatgacg ctatttatta
    10081 tcggtattgc tcttttatct acgggaacct atttgatgcg cctcggcggc gcgaaacttg
    10141 gcagccgtct ggcgctgtct gagcgttcac aggcgctgct ctcggatgcg gcaacggtgc
    10201 tgctattctc cgtcgcgctg gcgaccacct tttacgaagg cgaacatttt gccggaatgg
    10261 cgcgcgttct tggggttggc ttcgccgtat ttttagcctg acgtaaaatg ccgcttattg
    10321 tggtgattat cgccgctgca gtggtgaccg cgttattacg aatggcgggt attaattaac
    10381 gtcttacaga acagttggac gtgacaccct ataagtgatg aaggctgggc cgccctatgc
    10441 tgaagtggct cagaattttc gcatcagggg gataaatgtt ttccatatga atgccgattc
    10501 tcaattacac tatcagagta acttcaacat cttgtgatag cttcagatta ctggttttcc
    10561 taatagctct ccttagttaa ggtttacgtc agctattttt acggatattg cctgacgaaa
    10621 tgcatgaacg aaaaaagcgc ctgatcggcg ctctttattg gtgttatagc gtaactttat
    10681 aggcgcttac gccagcctgc acgcagttaa tgtgccgtca ctcaacgcag gcggttataa
    10741 tcatccacca tctcgttata acttctcaac gacgccggat aagaatccgc aaccatccat
    10801 cctgttgcag ggtcctgcac ccgtttcttt tcaaaatcag aatactcaac attgtctctg
    10861 atgcgacgaa tatatttttt agcttgtagc tgataatcag ccgcagagct gatgaaagaa
    10921 gaattacggc catcagtatt cacttctttc aattgcgcaa tcattgtttc cagttccgcg
    10981 acttttttca tcatcgcttc ggcatcaaag gtatcggcag aaataacctt gttgatctgc
    11041 tttgccgaaa tcatgacagc cagagaataa tagttaaatg ttttaccttc cgcttcttct
    11101 attttcttca actgtgtcaa ttgccgcttg tcatttattt cctgaatagc ctcatgatat
    11161 ttttccgaga taggtttaaa atcctcgata ttcttcagta atgtctgatg cagcgcctta
    11221 cctttagcaa aaccatcatc tttatagttt tcctgggtat aatatttttc catttcgtta
    11281 atggtattac ccagcgcggc ggcgctatca atatagctaa cggcaacgcc atcaataggc
    11341 tcaagcaatg gcgttaaggc ggccacctgt ttcatctctt tctggcaatt cgttatgtaa
    11401 gactccgtaa taccataaat gccataaacc aggctctctt tccctgtcgg acctttttta
    11461 aagtctttca cccaatccgc gtaacgcgcc agactgtgct gaacgggcaa ttgaagttta
    11521 ttaaaacaat cgatatagac atccattttt tcactataaa cttcttcagc gtcaacctcc
    11581 ggctgagctg gcgtttctgg cttcgccgcc gggggctgag ttgctgtttc tggcttcgct
    11641 gctgggggct gcgctggact ttcgccagat tgcgtttccg gcgtctgaga aggcgctggc
    11701 gtcgcaggct gactgctggc ggccggcgtc gcctcggttt taacattatt gtcatcacat
    11761 cctgttgcgc ccagggtcat tagcgcaatg attatcgctg aggataataa attccttttc
    11821 atttaattgc c
//
LOCUS       DAJVSD010000133        11767 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.133, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000133 DAJVSD010000000
VERSION     DAJVSD010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11767)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11767)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11767
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.133"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            60..5016
                     /locus_tag="OQP62_002851"
                     /pseudo
     CDS             60..5016
                     /locus_tag="OQP62_002851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010835061.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(5178..6527)
                     /gene="xseA"
                     /locus_tag="OQP62_002852"
     CDS             complement(5178..6527)
                     /gene="xseA"
                     /locus_tag="OQP62_002852"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HCS1722354.1"
                     /translation="MLSSQTSSIFTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPAS
                     GHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIAESM
                     QPAGEGLLQQKYEQLKAKLHAEGLFDQQHKQPLPSPAHCVGVITSKTGAALHDILHVL
                     KRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANTRGECDVLIVGRGGGSLEDLWSFND
                     ERVARAIFASRIPVVSAVGHETDVTIADFVADLRAPTPSAAAEIVSRNQQELLRQIQS
                     AQQRLGMAMDYYLANRSRRFTQIFHRLQQQHPQLRLARQQTALERLRQRMGFALEARI
                     KQATQRQQRVSQRLSQQNPQPRIHRVQSRIQQLEYRLTENIRSRLSEQRERFGNAVTH
                     LEAVSPLATLARGYTVSTTTDGKVLKKIKQVKAGDIMTTRLEDGWLESEVKSVTPGT"
     gene            6688..8154
                     /gene="guaB"
                     /locus_tag="OQP62_002853"
     CDS             6688..8154
                     /gene="guaB"
                     /locus_tag="OQP62_002853"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004151980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HCS1722355.1"
                     /translation="MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM
                     LSAAMDTVTEARLAIALAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLP
                     TTTLHEVKALTERNGFAGYPVVTEDNELVGIITGRDVRFVTDLNQPVSVYMTPKERLV
                     TVREGEAREVVLAKMHEKRVEKALVVDDNFHLLGMITVKDFQKAERKPNSCKDEQGRL
                     RVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGG
                     NVATGAGARALAEAGCSAVKVGIGPGSICTTRIVTGVGVPQITAVSDAVEALEGTGIP
                     VIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLG
                     AMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCATI
                     DELRTKAEFVRISGAGIQESHVHDVTITKESPNYRLGS"
     gene            8224..9801
                     /gene="guaA"
                     /locus_tag="OQP62_002854"
     CDS             8224..9801
                     /gene="guaA"
                     /locus_tag="OQP62_002854"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HCS1722356.1"
                     /translation="MTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEA
                     QIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEG
                     SNEREFGYAQVEVLTDSALVRGIEDSLTADGKPLLDVWMSHGDKVTAIPSDFVTVAST
                     ESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAV
                     ARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVMDM
                     FGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQ
                     GTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELG
                     LPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYDKVSQAFTV
                     FLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGIS
                     RVVYDISGKPPATIEWE"
     gene            complement(10124..10813)
                     /locus_tag="OQP62_002855"
     CDS             complement(10124..10813)
                     /locus_tag="OQP62_002855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001764183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722357.1"
                     /translation="MKDFSKYSKALGMAKFYVYAFYDTEDAAKKPFYIGKGKSERCLD
                     HIKYNDDSPKSERINHLLKTGNLGIDILRHGMDEATAKLVEATCIDLLGVGELTNKVR
                     GSSSLMGRITLDELNHLLLKQETEIAPEHAGLAFLLNSTYKSGMSALALYEATRGVWA
                     KVPKDENLQFAYATYGGLVMEVYEIQCWLKAGSQQYFTRELVIPPPKPTVQNLLDESH
                     HQKSEDYTLAS"
     gene            complement(11042..11581)
                     /locus_tag="OQP62_002856"
     CDS             complement(11042..11581)
                     /locus_tag="OQP62_002856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016505922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5384 family protein"
                     /protein_id="HCS1722358.1"
                     /translation="MKKVILGAVLFTLSGSVLSSSLQDQLAAVAQAEQQGKNEENRQR
                     DALQAKRDQEAQQERQRQANAAAVAKQRAKAAEAERKARQAKLAAEAAQDKARDQSYE
                     DELRRLEIQKQKLALAREEARVKRENEFIDQELKSKAAQTDVIQSHADANRNLSEGGR
                     DLLQSEGKAREEKASGWFN"
BASE COUNT         2730 a         3133 c         3265 g         2639 t
ORIGIN      
        1 atttgcagcc aatcaaatca agtttgcttc gtgaatgtta ttaaaaggaa atttaaaaat
       61 tgaacaggac ctacagtatc gtctggagcg ccgtgcgaaa tatgtatgtc gtagcttcag
      121 aactggcgcg aagccacagc aaagttaaaa tacaggcgca cgctaatgaa gtcgcccctt
      181 ctattaaaaa gcctgattca ggatgggcaa gacaccatgc gctggccctg gcaattgttg
      241 ccgcgcttgg ctttgccagc ccgctggcca tcgccgataa tccggtgtca tacaccgatg
      301 gggtcaagca cgacctgagc gacgattcgc cgatttccta ctcaggcact ggtgaaggtt
      361 ctgcactgca cctcgaaggc cttgcaacgc ccgaaggggg ctggcaggca acgtcgggta
      421 caggtacaaa tgtcgtgatt aacaccaacg gcggcggcga tcctgttcag ggaactcatg
      481 ctatcgccac ggcagttacc ctcaacaagg gcgcaacact tgacctgacc ggggcgcaga
      541 tctctacgga aggaacctac acggcaggta tcgacctcca ggcgcaaagc agcatgacgc
      601 tgaatggcgg gagcatccag atcggaagta attacggcat cctgaccctc tctggcgagt
      661 catgggctgc cctgattggc accgacgtta cggcaacgac gcaaagccgt agcagcatag
      721 tgtcacaatc aggtagcacg cttaacatta aggacgggag cgtaattacg ctgacaaacg
      781 gccaggtgcg cgtagtaggc gagacgacat acaactcctg gctgaatgtg tccgatagca
      841 cgatgagctc cacgggtacg gatagtacgc ttcttgtgtc caacaagggc gttcttgata
      901 ttacgaactc taccgtcacg cacgataatg ccacaggcgc cgctattgag gtgaaaaacg
      961 cctcaacggt gagcatctct gatgataaag attcgatggc catcaactcc aaaggcatcg
     1021 gtattaaaat cctcgcctcc agcgtggata ttaacggcgc caccatcaac gccgacggcg
     1081 acggcatctt tataacaagc aaaggtaaaa gcggtgggta tgatgatatc aacgcgctga
     1141 cggttaacaa agcacaggtt aattcagaga cgattgcgct gcatgtggac tctggcacga
     1201 cgattaacga tcctatcgtg ctaaccgata gcgcatttga cgcgccggca gtgatcaagc
     1261 tgggcagcaa ggcggtcatt caggccgaca atacgacatt gaacggtgac gttgttcaga
     1321 gtgacatgtc atcgtcatcg ctgtctttaa gccagggttc cacgttaacc ggtagtgtag
     1381 atgcgatgtt tactacactg tcgctcgacg atactagcca gtggaatatg accgactcgt
     1441 caatcatcgg caacctgacc aacaacggcg acattacgct gaacaacgag agcggttcga
     1501 caggcacgct gctgacggtg ggcaataccc tgaccttgca ggacggcagc cagataaacg
     1561 cgacgctgga taccgccaac agctcgccaa ttatcaaagc cgccaacgtg acgctggatg
     1621 ggacactgaa ccttagctca gcggccacct ttgtcgcgcc cgaaaccgac gagcagttag
     1681 gatcgttcac gctaattgat tcgcaaaccg cgattactac cgattttgac agcgtaacgc
     1741 tggatgccga cacctctgct atgccggatt acctgacgat caacgcgggc gttgatgcga
     1801 atgataatac caactacgtg ttgtctacgg gcctgagctg gtacgcggac gcaaaatctg
     1861 cgcgcgttgc gcacggcacc tttaccgttg acgcaggcga tacctttacc gtcaccagcg
     1921 aactggatga aaccgcggcc acctccaact gggacggtaa aacgctgttc aaagaaggcg
     1981 acggtacgct cgtcctcagc aacacggcga acgacttcgg caataccgac attaacggcg
     2041 gtacgctgtc tgcgaatgat gccgccgcgc tcggcagcgg cgacgtggcc attgcagaaa
     2101 acgcaaagct tgagttgagc caaggcacgc tggataacaa cgtgaccggc gagggccaaa
     2161 ttgtcaaaag cggtagcgat gagctgatcg tgaccggcga taacaactac agcggcggta
     2221 ccactatttc cgacggcacg ctgattgctg accatgcaga ttcgctgggt accggggctg
     2281 ttgccaacag cggcgtgctt caggtcggcg aaggcgagct ggaaaatacg ctttccggca
     2341 acggttcgct gatgaaaacc ggtacgggcg agctgacgtt aagcggcgac aacacttact
     2401 ccggcggcac cactatttcc ggcggtacgc tgattgccgc caacgttaac gcgctgggcg
     2461 gcggtgatgt cgataacgcg agtacgctga agctggacgc ggagggcgaa ttcaaccttg
     2521 cgaatgtcac gacccagtct ggagcaacga ctgagctgtc caaaggtacg acgctcaacg
     2581 tcgactcgct gactcagcaa gccgatagta cgctgaatat tgacctcagt aagactaatg
     2641 gtgaaagcgc cattaccgct gacagcgtct cgttggctgg tgcgctcaac attaccggga
     2701 tcggcaacgt cacagacagc tggacgcctg aggcatacac ctacacgctg attgacagcg
     2761 acagcgccat tacgaccgat ttcaatgatt tgaccgtcgc gggaatgaat agcgaagatg
     2821 ttgacttcct gaccatcgac ggaaaagtcg acgaagcaga tagcacaaac tatgatctga
     2881 cggcctccct ctcctggtat gcggacagag acaacgcttc taccgacgcc cacggcacct
     2941 ttacgctaag tgaccctgac ggcagcttta acgttgcggc taaactgaca gatgttgatg
     3001 acgcgctgga tccgggcagc acatgggacg gtaagtcgct gaccaaagaa ggcgcaggca
     3061 cgctgatcct ctccggcgac aacgactaca gcggcggcac tacaatcaat gaaggtacgc
     3121 tggtcgccgc cagcacgacg gcgctgggca ccggtctggt ggacaataac gccacgctgg
     3181 tactggacgc agacggtgaa gtcagcgcgg tgggcggcat caccactcat ggcggcgcga
     3241 cgacccaact ggcgctcggc acctcgttgg atctcggcga cagcgcgtta attcaggaag
     3301 atggcagtac gctgaacgtt gagctgaata gtgactcagc gcaaccgctg attaccggtg
     3361 gcagcgccac gcttggcggt gatttggtcg tcagcgacgc cagcctacaa gcgcgcgcct
     3421 ccgacgcgga gttccagtcc tttaaactga tggatatgga cagcgatatc agcggcgact
     3481 ttaccagcct gacgatgaac ctcaccgaca agccggacta tctgaccgta accggaacaa
     3541 tcaatcctca agaccagtct gaatacctgc ttaccgaagg gctgagctgg aatgcgaccg
     3601 ccacgtcagc gacgccagca cacggcacct tcactctggg cgcaggcgat agctttgaag
     3661 tcaccagcgt actgggcgat aaaaccggca acggcggctc gctttacctg aataccgtcc
     3721 tgggcgacga tgattcggcg accgataagt tggtcattac cggcgatgcc tccggcacca
     3781 ccgatctgta catcaacggc atcggcgatg gggcgcagac cactaacggt atcgaagtgg
     3841 tggatgttgg cggcgtatcg accagcgatg cgtttgtgtt aaaaaatgag gtaaacgcca
     3901 gtctgtatac ctaccgtctg tactggaatg aaagtgacaa cgactggtat ctggcgtcaa
     3961 aagcacagtc tgatgatgac gacagcggtg gcgatgtcac gccttcggac gacggcggcg
     4021 acggtggcga tgtcacgcct ccggacgacg gcggcgatgt cgcaccacag taccgtgcgg
     4081 atatcggcgc gtacatgggc aaccagtgga tggcgcgcaa cctgcaaatg cagacagacc
     4141 ctctatgacc gcgagggcag ccagtatcgt aacgctgatg gcagcgtctg ggcacgcttc
     4201 aaagcgggta aagcggaatc agaggctgtc agcggtaata tcgatatgga cagcaactac
     4261 tctcagttcc agctaggcgg cgacattctg gcttggggta acggccaaca gagcattacc
     4321 gttggcgtca tagcgagcta catcaacgcc gataccgaca gcaccggtaa ccgtggcgca
     4381 gacggtagcc agttcaccag cagcgccaac gtagacggct acaaccttgg cgtctatgcc
     4441 acctggtttg ccgatgccca aacgcatagc ggcgcgtatg tcgacagctg gtaccaatat
     4501 ggtttctaca acaacagcgt agagagcggt gatgcgggat ctgaatctta tgattcaacc
     4561 gctaatgctg tctcgctgga aaccggttat cgctacgata ttgcgcttag caacggtaat
     4621 actgtcagtc tgacgccgca ggcgcaggtt gtctggcaga actactcagc ggatagcgtg
     4681 aaggataact acggcacccg gatcgacggt caggatggcg acagttggac aacgcgcctg
     4741 ggtctgcgtg ttgacggcaa gctgtacaaa ggcagccgta cggttatcca gccgtttgct
     4801 gaagccaact ggctgcacac cagcgatgat gtgtcggtat cgtttgatga tgccacggtg
     4861 aaacaggatc ttccggctaa ccgtgcggag ctgaaagtgg gtctgcaggc agatatcgat
     4921 aagcagtgga gcgttcgcgc tcaggttgcc gggcagactg gcagcaatga ctttggcgat
     4981 ctgaacggta gcctcaatct gcgctataac tggtaagtta gacaaaaccg ggcgggtatt
     5041 ccctgcccgg ttttgaggcg aatgacaaac cggttgagcg tcggattgtg gctacacctt
     5101 atccgacgtg gcgcgtgggt tggctgaggt gaagtcgaaa cccaacatcg cgctgcaaaa
     5161 ggtgggggag tgttggatta cgttcccggc gtgacggatt tgacttcact ttcaagccag
     5221 ccgtcctcca gccgcgtggt catgatatcg cctgctttga cctgtttgat ctttttcaac
     5281 accttgccgt ccgttgtcgt cgaaaccgta tagccgcgcg ccagcgtggc taacgggctg
     5341 accgcttcca gatgcgtgac cgcgttgcca aaacgctcgc gctgttcgct taaccgtgag
     5401 cggatattct ccgtcagacg atattccagc tgttggatgc gcgactgcac gcggtgaatg
     5461 cgcggctgcg gattttgctg gctcaggcgt tgacttacgc gttgctgacg ctgagtggcc
     5521 tgcttaatcc tggcctcaag cgcaaatccc atccgttggc gtagacgttc cagcgcggtt
     5581 tgctgacggg ccagacgtag ttgcggatgt tgttgttgca gacggtgaaa aatctgcgtg
     5641 aaacgacggc tgcggttggc gaggtagtag tccatcgcca tgcccagacg ctgctgggcg
     5701 gactggatct gacgcaacaa ctcctgctgg ttacggctga caatttctgc cgctgctgat
     5761 ggcgtcggcg cgcgcaggtc ggcgacaaaa tcggcgatag tgacgtcggt ttcgtgaccg
     5821 acggcgctga ccaccggaat acggctggca aaaatagccc gcgccacgcg ttcgtcgtta
     5881 aaactccaca aatcttccag cgaaccgccg ccgcgtccga cgatcagcac gtcgcactcg
     5941 ccgcgcgtgt ttgccagttc gatagcacga acgatctgcc ccggcgcatc gtcgccctgt
     6001 accgcggttg gatagataat aacgggcagg gatgggtcac gacgcttcaa cacgtggagg
     6061 atatcgtgca gcgccgcgcc ggttttcgag gtgatcaccc caacgcagtg ggccggggag
     6121 ggcaacggct gtttatgctg ctgatcgaac aagccttcgg catggagttt ggcttttagc
     6181 tgctcatact tctgctgcaa caagccttcg ccagccggct gcatactttc ggcgatgatt
     6241 tgataatcgc cgcgcggctc gtacagcgta atgttggcgc gtaccagcac ctgctgcccg
     6301 tgctgcgggc ggaacgtcac ccggcggttg ctgttgcgga acatcgcaca gcgcacctga
     6361 gcggtatcgt ctttgagcgt aaagtaccag tggcccgacg caggctgcgt gaaattagaa
     6421 atctcgccgc tgatccatac ctgtcccatc tcctgttcta acagcagacg aaccgtctgg
     6481 ttaaggcggc ttacggtaaa aattgaggaa gtttgagagg ataacatgtg agcgggatca
     6541 aattctaaat cagcaggtta ttcaatcgat agtaacctgc tcacggggga tcgcaagcac
     6601 tatttgcaaa aaaatgtaga tgcaaccgat tacgttctgt ataatgccgc ggcaatattt
     6661 attaacctcc caggtgagat attgcccatg ctacgtatcg ctaaagaagc cctgacgttt
     6721 gacgacgtcc tccttgttcc cgctcactcc accgttttgc cgaatactgc tgatctcagc
     6781 acgcagttga cgaaaactat tcgtctgaat attcctatgc tttctgcggc gatggacacc
     6841 gtgacggaag cgcgcctggc aattgccctg gcccaggaag gcggcatcgg ttttatccac
     6901 aaaaacatgt ctattgagcg ccaggcggaa gaagttcgcc gcgtgaagaa acacgagtcc
     6961 ggcgtagtga ccgacccgca gaccgtcctg ccaaccacca cgttgcatga agtgaaagcc
     7021 ctgaccgagc gtaacggttt tgcgggctat ccggtggtga ctgaagataa cgagctggtg
     7081 ggtatcatca ccggtcgtga cgtgcgtttt gtgactgacc tgaaccagcc ggtgagtgtt
     7141 tacatgacgc cgaaagagcg tctggtgacc gttcgtgaag gcgaagcccg tgaagtcgtg
     7201 ctggcaaaaa tgcacgaaaa acgcgtagaa aaagcgctgg tcgttgatga taacttccat
     7261 ctgcttggca tgattaccgt aaaagatttc cagaaagcgg aacgtaaacc aaactcctgt
     7321 aaagatgagc agggccgttt acgtgtcggc gcggcggtcg gcgcaggcgc gggcaacgaa
     7381 gagcgcgttg acgcgctggt ggcggcaggc gttgacgtcc tgctgatcga ctcttctcac
     7441 ggtcactctg aaggcgtgtt gcaacgtatc cgtgaaaccc gtgctaaata tcctgacctg
     7501 caaatcatcg gcggcaacgt cgcgacgggc gcaggcgctc gcgcactggc ggaagccggt
     7561 tgcagcgcgg tgaaagtcgg tatcggcccg ggttccatct gtaccactcg tatcgtgact
     7621 ggcgtgggcg ttccgcagat taccgctgtt tctgacgcag ttgaagcgct ggaaggcacc
     7681 gggattccgg ttatcgctga cggcggtatc cgtttctccg gcgacatcgc caaagccatc
     7741 gccgcaggcg cgagcgctgt catggtcggt tctatgctgg cgggtaccga agaatccccg
     7801 ggcgaaatcg aactctacca gggccgttct tacaaatctt accgcggcat gggctcgctg
     7861 ggcgcgatgt ccaaaggttc ctctgaccgt tacttccaga gcgacaacgc cgccgacaaa
     7921 ctggtgccgg aaggtatcga aggccgcgta gcctataaag gtcgcctgaa agagatcatt
     7981 caccagcaga tgggcggcct gcgctcctgt atggggctga ccggttgtgc taccatcgac
     8041 gaactgcgta ctaaagcgga gtttgtgcgt atcagcggtg cgggtatcca ggaaagccac
     8101 gttcacgacg tgaccatcac caaagagtcc ccgaactacc gtctgggctc ctgattttct
     8161 tcgcccgacc ttcgcgtcgg gcgatttatt taatctgttt cacttgcctc ggaataagcg
     8221 tcaatgacgg aaaacattca taagcatcgc atcctcattc tggacttcgg ttctcagtac
     8281 actcaactgg ttgcgcgccg cgtgcgtgag ctgggtgttt actgcgaact gtgggcgtgg
     8341 gatgtgacag aagcacaaat tcgtgacttc aacccaagcg gcattattct ttccggcggc
     8401 ccggaaagca ccaccgaaga aaacagcccg cgcgcgccgc agtatgtctt tgaagcaggc
     8461 gtgccggtat ttggcgtctg ctacgggatg cagaccatgg cgatgcagct tggcggtcat
     8521 gtagaaggtt ctaatgagcg tgaatttggt tacgcgcagg tcgaagtgct gaccgacagc
     8581 gcgctggttc gcggtattga agattccctg accgccgacg gcaaaccgct gctggacgtg
     8641 tggatgagcc acggcgataa agtgacggcg attccgtccg acttcgtgac cgtagccagc
     8701 accgaaagct gcccgttcgc catcatggct aacgaagaaa aacgcttcta cggcgtacag
     8761 ttccacccgg aagtgactca cacccgccag ggtatgcgca tgctggagcg ttttgtgcgt
     8821 gatatctgcc agtgtgaagc cctgtggacg ccggcgaaga tcatcgacga cgccgtggcg
     8881 cgcattcgcg agcaggtagg cgacgataaa gtgatcctcg gtctctccgg cggcgtggat
     8941 tcttccgtaa ccgcaatgct gctgcaccgc gcgatcggta aaaatctgac ctgtgtattc
     9001 gtcgacaacg gcctgctgcg tctcaacgaa gccgagcagg tgatggacat gtttggcgac
     9061 cattttggtc tgaacatcgt tcacgtaccg gcagaagatc gcttcctgtc cgcgttggct
     9121 ggcgaaaacg atccggaagc gaagcgtaag atcattggcc gtgtttttgt ggaagtgttc
     9181 gacgaagaag cgttgaaact ggaagacgtg aaatggctgg cgcagggcac catctaccct
     9241 gacgtcatcg aatctgcggc gtctgcaacc ggtaaagcgc acgtcatcaa atctcaccac
     9301 aatgttggcg gcctgccgaa agagatgaag atggggctgg ttgaaccgct gaaagagctg
     9361 ttcaaagacg aagtgcgtaa gattggtctg gagctgggcc tgccgtacga catgctgtac
     9421 cgtcatccgt tcccggggcc gggcctcggc gtacgtgtac tgggtgaagt gaagaaagag
     9481 tactgcgacc tgctgcgccg tgctgatgcc atcttcattg aagagctgcg taaggcggat
     9541 ctgtacgaca aagtcagcca ggcgttcacc gtcttcctgc cagtacgctc cgttggcgta
     9601 atgggcgatg gtcgtaagta cgattgggtg gtctctctgc gtgctgtcga aaccatcgac
     9661 tttatgaccg cgcactgggc gcacctgccg tatgacttcc tgggtcgtgt ttccaaccgc
     9721 atcatcaatg aagtcaacgg gatttcccgt gtggtgtatg acatcagcgg taaaccaccg
     9781 gctaccattg agtgggaata agtcgataac ccttcctgtg ttttcatgaa caggtaaaag
     9841 tgaatttaac cctctgtttt tgcagagggt ttttatttat gtgcatagat gcattttctg
     9901 tgtagtgcac agcttctggc ggcaaagcac tgcatcgaca caatagtggg tttcactggc
     9961 agcacacaat caaatctgac agtcggcttc gagcgaggtg cggacattgg tagcttcaac
    10021 aacatgactg gcattgaggt gtattaatca acgggaagca ggtcagttta ctccgccagc
    10081 ccgactttta cgaaagggct accatgacta cgcgattttt tgattagctt gccaacgtat
    10141 aatcctctga tttctggtga tgcgattcgt ccaacaaatt ctgaacggtt ggtttcgggg
    10201 gggggatgac caattcccgg gtaaagtatt gctgagagcc tgccttcaac cagcactgta
    10261 tctcgtaaac ttccatcacc aaaccgccgt aggtggcgta tgcaaattgt aggttttcat
    10321 cttttggtac ttttgcccag acgccacgcg tagcttcata taatgcaagt gcactcatgc
    10381 cagacttgta ggtgctgttt agcaaaaaag cgagcccggc atgttcaggt gcgatttccg
    10441 tctcttgctt aagaagaaga tgattgagct catccagcgt gattcgcccc ataagggagc
    10501 tgcttcctcg tactttgttg gtcagttctc caacacccaa gagatcaata catgttgctt
    10561 caacaagctt cgcggttgcc tcatccatgc catggcgtag tatgtcgata cccagatttc
    10621 ctgtttttaa cagatgatta attcgttctg atttcggaga gtcatcatta tactttatat
    10681 gatcaaggca gcgttctgac ttgcctttgc ctatataaaa cggcttctta gctgcatctt
    10741 cagtgtcata aaatgcataa acatagaact tagccatccc taacgctttt gagtattttg
    10801 aaaaatcttt caaaccttgc ttccttaagg caaaagtact taattttact atcggcacta
    10861 tagttcagaa cttaagcgca aaacaattag cgtatagatt gacctgcgtc cattgatgaa
    10921 tatgggccaa agttaacaac gtccgctatt ggcacagacc tgcctgtcag attaggttta
    10981 ggtctgtgcc atagctatgt caggtcaaat ctgagctaat acacataaat gattagcgaa
    11041 atcagttaaa ccagccgctt gccttttcct cacgggcttt accttcgctt tgcagcagat
    11101 cgcgaccgcc ttcagataga tttctgtttg catcagcatg agattgaata acatctgtct
    11161 gggcagcttt acttttcagc tcttgatcga tgaattcatt ttctcttttt acccgggcct
    11221 cttccctggc cagcgccagt ttttgtttct gaatttctaa acgacgaagc tcatcttcgt
    11281 agctttgatc gcgcgcttta tcttgcgcgg cttccgctgc caattttgct tgccgtgctt
    11341 tccgttcagc ttctgccgct tttgctcgct gcttagcaac cgctgccgca ttggcttgcc
    11401 tttgtctttc ctgttgagcc tcttgatctc gtttggcttg cagagcatca cgctgtctgt
    11461 tttcttcatt ttttccttgc tgttcagcct gggctaccgc cgcaagctga tcctgcaaag
    11521 aagaagataa aaccgagccg cttagagtga ataaaacagc gcctaaaata actttcttca
    11581 taaaatctcc cgatagttag cttttctcag gacatttcgt attgggttga attcgcgttt
    11641 cgttatcttt ggtcgatatc accatagcca gaccggtggt aaattggcac gtttttccca
    11701 cctgggtgga ggtataaacc ttcgttcctt ctttgtaagt caaagatacg gcttcaacta
    11761 acgtttt
//
LOCUS       DAJVSD010000134        11755 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.134, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000134 DAJVSD010000000
VERSION     DAJVSD010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11755
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.134"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(184..1383)
                     /locus_tag="OQP62_002857"
     CDS             complement(184..1383)
                     /locus_tag="OQP62_002857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter"
                     /protein_id="HCS1722359.1"
                     /translation="MESWKVNLISVWFGCFFTGLAISQILPFLPLYISQLGVSSHEAL
                     SMWSGLTFSITFLISAIVSPMWGSLADRKGRKLMLLRASLGMAIAILLQAFATHVWQL
                     FLLRGIMGLTSGYIPNAMALVASQVPRERSGWALSTLSTAQISGVIGGPLMGGFVADH
                     IGLRAVFLITAMLLVVSFLVTLFLIKEGVRPVIKKSERLSGKAVFASLPYPALVISLF
                     FTTMVIQLCNGSISPILALFIKSMMPDSNNIAFLSGLIASVPGISAPRLGKLGDRIGT
                     ERILMATLICAVLLFFAMSWVTTPFQLGLLRFLLGFADGAMLPAVQTLLVKYSSDQIT
                     GRIFGYNQSFMYLGNVVGPLMGATVSAMAGFRWVFIATAAIVLINIGQLTLALRHRRN
                     AQKAKGQ"
     gene            complement(1552..2265)
                     /locus_tag="OQP62_002858"
     CDS             complement(1552..2265)
                     /locus_tag="OQP62_002858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extensin family protein"
                     /protein_id="HCS1722360.1"
                     /translation="MFMGCENGGRVRGKGFLIIVLLGGIGGLGYRYLPSYYNPFAPLQ
                     LADPPGWITTFKLQRLTPSQCRELLTAANQQGLISSQPVADSAGECPLSHVVRVRDFG
                     QVKLSSSFLASCPLALRSALFVEQQAKPLTETWMQRRLTRIEHLGSYACRNIYHRPDA
                     RRSEHASAEALDVSGFQLSDGRKITVLRGWGREETGPWLRAMLNASCHYYGNGLGPDY
                     NAAHANHFHLGMRGYGVCR"
     gene            2343..3437
                     /gene="ddlA"
                     /locus_tag="OQP62_002859"
     CDS             2343..3437
                     /gene="ddlA"
                     /locus_tag="OQP62_002859"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HCS1722361.1"
                     /translation="MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGID
                     KAGQWHVNDAENYLQNADDPAHIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVI
                     FPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFIT
                     LTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKV
                     VVEQGIKGREIECAVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPS
                     EVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPGFTNISMYPKLWQA
                     SGLGYTDLISRLIELALERHTANNALKTTM"
     gene            complement(3463..3678)
                     /locus_tag="OQP62_002860"
     CDS             complement(3463..3678)
                     /locus_tag="OQP62_002860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2754 family protein"
                     /protein_id="HCS1722362.1"
                     /translation="MRLPVKIRRDWHYYAFSIGLIFILNGVVGLLGFEAKGWQTYGVG
                     LVTWIISFWLAGFIIRRREDDEVKDAR"
     gene            3946..4254
                     /locus_tag="OQP62_002861"
     CDS             3946..4254
                     /locus_tag="OQP62_002861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiY family protein"
                     /protein_id="HCS1722363.1"
                     /translation="MADFTLSKSLFSGKHRETSSTPGNIAYAIFVLFCFWAGAQLLNL
                     LVHAPGIYEHLMQVQDTGRPRVEIGLGVGTIFGLVPFLTGCLIFAVIAAFLRWRHRHQ
                     "
     gene            complement(4292..5386)
                     /gene="yaiW"
                     /locus_tag="OQP62_002862"
     CDS             complement(4292..5386)
                     /gene="yaiW"
                     /locus_tag="OQP62_002862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-exposed outer membrane lipoprotein YaiW"
                     /protein_id="HCS1722364.1"
                     /translation="MSAASRLYPLPFLAVAILAGCSSQSGQPVSKGEKPVDVASVVRQ
                     KMPASVKDREAWAKDIATTFKSQGLAPTVENICSVLAVAQQESGYQADPVVPGLSKIA
                     WQEIDRRAERLHIPLFLVHTALKINSPNGKSYSERLDTVKTEKQLSAIFDDFINMVPM
                     GQTLFGSYNPVHTGGPMQVSIAFAEQHAKGYPWNMAGTVRQEVFTRRGGLWFGTYHLL
                     NYPANYSAPVFRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYNSKEPGKTE
                     LAVRKLAGQLGMSEREIRSQLEKGDNLAFEKTALYKKVYKLAEAKTGKTLAREMLPGI
                     QLESPKITRKLTTAWFAKRVDERRARCMGR"
     gene            complement(5401..6621)
                     /gene="sbmA"
                     /locus_tag="OQP62_002863"
     CDS             complement(5401..6621)
                     /gene="sbmA"
                     /locus_tag="OQP62_002863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide antibiotic transporter SbmA"
                     /protein_id="HCS1722365.1"
                     /translation="MFKSFFPKPGPFFMSAFVWALIAVIFWQAGGGDWVARLVGASDE
                     VPISAARFWLLDYLIFYAYYLICVGLFATFWFIYSPHRWQYWSILGTSLIIFVTWFLV
                     EVGVAVNAWYAPFYDLIQTALNSPHKVTLGQFYHEVGVFLGIALIAVVIGVLNNFFVS
                     HYVFRWRTAMNEHYMAHWQYLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLIA
                     FLPVLVTLSAHVPNLPIVGHIPYGLVIAAIVWSLMGTGLLAVVGIKLSGLEFKNQRVE
                     AAYRKELVYGEDDASRATPPTVRELFSAVRHNYFRLYFHYMYFNIARILYLQVDNVFG
                     LFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTLVELMSIYKRLRSFERQ
                     LDGQPVQEVTHSFS"
     gene            6957..8114
                     /gene="ampH"
                     /locus_tag="OQP62_002864"
     CDS             6957..8114
                     /gene="ampH"
                     /locus_tag="OQP62_002864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine-
                     carboxypeptidase/endopeptidase AmpH"
                     /protein_id="HCS1722366.1"
                     /translation="MKRSLLFTAMLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFY
                     GSGATGMALVVIDGNQRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLD
                     QGTVKLNDPLSKYAPPGAHVPTYQGTPITLVNLATHTSALPREQPGGAAHRPVFVWPT
                     REQRWNWLSTATLKVAPGSQAAYSNLAFDLLADALATASGKPYTQLFEEKITRPLGMK
                     DTTFTPSPDQCKRLMVAEKGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYHR
                     SHQADRMQTLIYQRAQLKKIIGMDVPGKADALGLGWVYMAPKDGRPGIIQKTGGGGGF
                     ITYMAMIPQYNIGAFVVVTRSPLTRFTNMSDGINDLVTELSGNKPIAIPAS"
     gene            complement(8159..8782)
                     /gene="iprA"
                     /locus_tag="OQP62_002865"
     CDS             complement(8159..8782)
                     /gene="iprA"
                     /locus_tag="OQP62_002865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogen peroxide resistance inhibitor IprA"
                     /protein_id="HCS1722367.1"
                     /translation="MLSLNKPLQEFNRLDKCLSKHGTRFEFVNDKEIICSPDESNTHT
                     FVILEGVVSLVRGDKVLIGIVQAPFIFGLADGVAKKEAQYKLIAESGCIGYRLSSSQT
                     LAIIEQNQLWREAFCWIVWKSQVLELRDKQLIGNNSYDQIRATLMTMIEWDEELRSRI
                     GVMNYIHQRTRVSRSVVAEVLAALRKGNYIEMNKGKLISINRLPSEY"
     gene            complement(8868..11753)
                     /locus_tag="OQP62_002866"
     CDS             complement(8868..11753)
                     /locus_tag="OQP62_002866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS1722368.1"
                     /translation="MHSWKKKLVVSQLALACTLAITSQANATTYDTFGYHDDAATVFG
                     WDDTNDHDYLTYGGYVYNTPASDSGYFDTKFTGDTVNGVISTYYLNHDYANDTANTLD
                     VTNSTIHGMITSYQMGYGQYVWTNGSDYTTHDWVDDDTFNLNISNSTIDDDFEAFYFT
                     DTYLDSDGKTVKTDYDKLVTAGLGTAITLDVESNINITNNSHVAGIALYQNDLGNSTY
                     TTEAHQWDNTINVANSTVTSGSWSEDEEQGHFGNSSEPSDYNGNGWNKDDVALAFVDD
                     PYSNYRMVNNVTFTDSQLLGDVVLESSWNYNFYSNGRLVDDSTTVYTNGGWADDDQNV
                     DHLTLTLNNTKWVGAAVNDSQSMDPVQFYDVDANSLDPDSTNYDAWGRVNSAASFQSG
                     IFDVSLNNGSEWDTTKTSVIDTLAVNSGSQVDVANGSNLTADTITLNGGSAMNIGEGG
                     YVDTDHLTVDTFSTVTLADDVSSAWSDDALYANTITVTHGGMLDIQTNNTNADSVIDT
                     DTLELTSSNVADNNGNVYAGVFNIHSNDYTLNADLVNDRTWDTTQANYGYGVVAMNSD
                     GHLTINGNGDINNGDEADASSTTDNVVAATGNYKVRIDNATGAGSVADYKGNELIYVN
                     DINTDATFSAANKADLGAYTYQAKQEGNTVVLEQMELTDYANMALSIPSANTNIWNLE
                     QDTVGTRLTNARHGLADNGGAWVSYFGGNFNGDNGTINYDQDVNGIMVGVDTKVDGNN
                     AKWIVGAAAGFAKGDLSDRTGQVDQDSQSAYIYSSARFANNIFVDGNLSYSHFNNDLS
                     ANMSDGTYVDGNTSSDAWGFGLKLGYDLKLGDAGYVTPYGSVSGLFQSGDDYQLSNDM
                     KVDGQSYDSMRYELGVDAGYTFTYSEDQALTPYFKLAYVYDDSNNDADVNGDSIDNGV
                     EGFAVRVGLGTQFSFTKNFSAYTDANYLGGGDVDQDWSANVGVKYTW"
BASE COUNT         3095 a         3039 c         2775 g         2846 t
ORIGIN      
        1 actgtcgccg cagcgaaacg tttctcagac cgaaaacgag acgataataa accatcaaaa
       61 aacaataatc acgctatatc ataatttaag gttatgccat ctatagaaaa acttcacgga
      121 taaagagtat atcttttaat ttaaaccata tcgtaacggc agaagcgccg ttacgatgca
      181 ccgctattgg cctttcgctt tttgcgcgtt acgccgatga cgtaacgcca gggtcagttg
      241 tccaatattg atcaacacga tcgccgccgt agcgataaaa acccagcgga aaccggccat
      301 cgccgatacc gtcgcgccca tcaacggccc aaccacgttg cccaggtaca taaatgactg
      361 gttgtagcca aaaatacgtc cggtaatttg atcgctggag tatttcacca ataacgtttg
      421 tacggcgggt aacatcgcgc catcggcaaa gcctaacaag aaacgtaaca gccccagctg
      481 gaacggcgtg gtgacccagg acatcgcgaa gaaaagcagc actgcgcaga taagcgtggc
      541 catcagaatt ctttccgtgc cgattctgtc gccaagtttt cccaggcgag gcgcggagat
      601 accgggcacc gaggcgatta acccgctaag aaaggcgatg ttattactgt ccggcatcat
      661 tgatttgata aacagcgcca ggattggact gatggaacca ttacagagtt gaatgaccat
      721 cgtggtaaaa aacaaactga tcaccagcgc aggataaggt aacgacgcaa aaacggcttt
      781 accgctcagg cgttcgcttt tcttgatgac cggacgcacg ccttctttaa ttaaaaatag
      841 cgtgaccaga aagctcacca ccaacagcat ggcggtaatc agaaataccg cccgcagccc
      901 gatatgatcc gcgacaaagc cgcccattaa cggcccgccg ataacgccgc tgatctgcgc
      961 ggtagaaagc gtactgagcg cccagccgct acgttcgcgc ggtacctgag aggctaccag
     1021 cgccatggca ttggggatat agcctgacgt taaccccatg attccgcgca gcaggaaaag
     1081 ttgccagaca tgggtcgcga atgcttgcag tagaatagct atcgccatcc cgagcgacgc
     1141 gcgcaatagc atcagtttac gccctttacg atcggcgaga ctgccccaca tcggcgatac
     1201 aatggcggaa ataagaaacg tgatgctaaa cgttaacccg gaccacattg ataacgcttc
     1261 atgggaagag acgccaagct gggaaatata caggggtaaa aatggcagga tttggctgat
     1321 tgccagcccg gtaaaaaaac atccaaacca aacggaaatt agattaactt tccaggattc
     1381 cataagactc gtaacggtaa gtagctgaaa atacgcgtta gcttagcaag ctctcatttt
     1441 cctggtggtt ccagaggtgc gatacgtcac actttgctat tttgtctccc cgttcatcat
     1501 ttttgtgaaa catatcacat tatatagccg cgaaaggcag acgtttatgc tttaacgaca
     1561 cacgccgtag ccccgcattc caagatgaaa atggttagca tgagcagcgt tatagtcagg
     1621 cccgagccca ttgccataat aatggcaact ggcgtttaac atagcgcgta accagggccc
     1681 cgtctcctca cgcccccagc cgcgcaggac agtgattttt cggccatctg atagttgaaa
     1741 cccgctgaca tccagcgctt ctgcgctggc atgttcactg cgacgcgcat ccggacggtg
     1801 ataaatatta cggcaggcat agctgcccag atgttcgatg cgggtcaggc ggcgctgcat
     1861 ccacgtttct gttaaaggtt ttgcctgctg ttcgacaaac agcgcggaac gcagcgccaa
     1921 cgggcaggag gctaaaaaac tgctgctcag ttttacctgg ccaaaatctc tgacgcgcac
     1981 aacatgggac aagggacatt caccagcgct atccgcaaca ggttgtgatg aaattaatcc
     2041 ctgttgattg gccgccgtca acagctcccg gcactgcgac ggcgtcaggc gctgtagttt
     2101 gaaggtagtg atccagcctg gcggatcggc aagttgtagc ggagcaaaag gattataata
     2161 agagggaaga taacgatatc ccagcccgcc aataccgccc aacagcacaa taatcagaaa
     2221 acccttacct ctcacgcggc ctccgttctc acatcccata aacattatgg cagaagcccg
     2281 cgaaacccgc gttttgtcgt ggtaatgtat acgctttgca ttcgatggaa tgggttttta
     2341 agatggcgaa attgcgggta ggaatagtat ttggcggtaa gtcggcggaa catgaagtgt
     2401 ctttgcaatc agcgaaaaat atcgttgatg cgatcgataa aacccgcttc gacgtggtgc
     2461 tgttagggat agataaggcg ggacaatggc atgttaacga tgcggaaaat tatttgcaga
     2521 atgcagacga tccggcacat atcgcgctac gtccttcggc aatcagtctg gcccaggtgc
     2581 ctggcaaaca ccaacaccaa ttgattaacg ctcagaacgg gcagccgcta ccgacggtag
     2641 atgttatttt tcctatcgtc cacggtacgc tgggcgaaga cggctcattg caggggatgc
     2701 tgcgcgtcgc aaacttaccg tttgtcggtt cagacgtgct gagctccgca gcctgcatgg
     2761 ataaagacgt cgccaaacga ctgctacgcg atgcaggact gaatatcgcc ccgtttatta
     2821 cactcacccg aacgaatcgt cacgcgttta gttttgccga ggttgaatcc cgtctgggac
     2881 tgccgctgtt cgttaagccc gccaatcagg gctcttcggt cggcgtcagt aaagtcgcta
     2941 acgaagcgca atatcagcag gcggtcgcgc tggctttcga attcgatcat aaagtggtgg
     3001 tggagcaagg gatcaaaggg cgcgagatcg aatgcgccgt attaggtaac gataacccac
     3061 aggccagtac ctgcggcgaa atcgtactga acagcgaatt ttacgcctac gatactaagt
     3121 atattgatga taatggcgcg caagttgtcg tgcctgcgca gatcccttcc gaggtgaatg
     3181 acaagatccg cgcgatcgcg atccaggctt atcagacgct ggggtgcgcg ggtatggcgc
     3241 gtgtcgatgt cttcttaacg gcagacaatg aggtcgtgat taacgagatt aatacgctgc
     3301 caggttttac caatatcagt atgtatccaa aactctggca ggcgagcgga ttgggctata
     3361 ccgatttgat cagccgcctg attgagctgg cgctggaacg ccatacggcg aataacgcct
     3421 taaaaaccac gatgtaatag cgcacgcccg atagcgcaac gtttatcggg cgtcttttac
     3481 ctcatcatct tcgcgccggc gaatgatgaa ccccgccagc cagaagctga taatccacgt
     3541 taccagccca acgccatagg tttgccatcc tttcgcctca aaacccagca atcctacgac
     3601 gccattcaaa ataaagataa ggccaataga gaaggcatag tagtgccagt cacgacgaat
     3661 ttttacaggc aaacgcataa cgactccgac gtattaacag caacaaaaac gtatttttgc
     3721 atacttctgg cgagcgagtc tgtgggggat acggaatttc ttaaatgtta attgattttg
     3781 ataaaagtga tcgttttgtg acaactaaca aaaatttacg cgatggatac attccatatg
     3841 tgaaattacc atgattctga tattgacaaa cacaatgacc tgtcagactt cacagtaagc
     3901 cgatggcata acgccagatc gtagccgatc atcctggagg tctttatggc tgatttcact
     3961 ctctcaaaat cgctgttcag cgggaagcat cgagaaacct cctctacgcc cggaaatatt
     4021 gcttacgcca tatttgtact gttttgcttc tgggccggag cgcaactctt aaacctgctg
     4081 gttcatgcgc cgggtatcta tgagcatctg atgcaggtac aggatacagg tcgaccacgg
     4141 gtagagattg ggctgggcgt cgggacgatt tttggcctgg tgcccttcct cacgggctgc
     4201 ctcatttttg ccgttatcgc cgcgttttta cgctggcgtc accgtcacca ataaacctta
     4261 gcgcgctgga gaaaatatcc cagcgcgaaa tttatcgccc catacaccgc gcccgccgct
     4321 catcaactcg tttagcaaac caggcggtcg tcagcttacg cgtgatcttc ggactttcca
     4381 gttgaatacc gggcaacatt tcccgcgcaa gcgtcttgcc cgttttggcc tcggccagct
     4441 tatagacttt cttgtagagc gccgtttttt caaacgccag gttatcgcct ttctccagtt
     4501 ggctgcgaat ttcacgctca ctcattccca actgccctgc cagtttgcgc accgctaact
     4561 ctgttttgcc cggttccttg ctgttataac gaatcagatc gccatccagc gccagtttta
     4621 ccccactggc tttactgacg gcattctgga acgcagcgtt acggctggcg taccatcccg
     4681 cgttgaagtc ggcgaagcgg aaaacaggcg cgctgtagtt cgccgggtaa ttcagcaaat
     4741 ggtaggttcc aaaccacaat ccgccacggc gcgtaaagac ctcctgacgt accgtacccg
     4801 ccatattcca cggataacct ttcgcgtgct gttcggcaaa ggcaatgctg acctgcatcg
     4861 ggccgcccgt atgcaccggg ttatatgagc caaatagcgt ctgccccata gggaccatat
     4921 tgataaagtc gtcaaaaata gcgctaagct gtttttcggt ttttaccgtg tccaggcgtt
     4981 cgctatagct cttgccgttg ggggagttaa ttttcagcgc ggtgtgcacc agaaacagcg
     5041 gaatgtgtag tcgttcagcg cggcgatcaa tctcctgcca ggcgatttta cttagccccg
     5101 gcacgacagg atccgcctga taaccggact cctgctgggc gacagccagc accgaacaga
     5161 tattttctac cgtcggcgcc agcccctggc tcttaaacgt tgtcgcgata tctttcgccc
     5221 aggcctctct gtctttgaca ctggccggca ttttctgacg tactacgctt gccacgtcga
     5281 caggcttctc gcccttgctc accggctgcc cggattgact actacagcca gccaatatgg
     5341 cgaccgccag aaaaggcaga ggataaagac gggacgccgc cgacataacg tttccttctg
     5401 ttagctaaaa gagtgggtca cttcctgaac tggctgacca tccaactggc gttcaaagct
     5461 acgtaaacgt ttataaatag acatcagctc caccagagtc gtccaggagt taatcaaata
     5521 ctggaacgaa ccgcgcacct gaccaaacac gttggtgatt tgcgtcatca gccccagcgt
     5581 aatcgtaccg gcaacaatgg aaggaaacag caggaacaaa ccgaaaacgt tatcgacctg
     5641 caaatagaga atgcgcgcga tgttgaaata catatagtga aagtagagac ggaagtagtt
     5701 atggcgcacc gcgctaaaca gttcacggac ggtgggcggc gtggcgcggc tggcgtcatc
     5761 ttcaccgtag accagctctt tacgataagc tgcctccact cgctgatttt taaattccag
     5821 ccccgacaat ttgatcccga cgaccgccag caggcccgtc cccattaatg accagactat
     5881 ggcggcaatg accaggccgt aagggatatg tcctacgatg ggtaaattcg gcacatgcgc
     5941 tgacagggtg accaacaccg gcagaaaggc gataagcgtc atgatggcat tgataaaact
     6001 cacgcccatg ttctccagtg tagaggcaaa acgcatggta tcttcctgca cacgctgggc
     6061 ggccccttcg atatggcgca ggtactgcca gtgcgccata tagtgctcat tcattgcggt
     6121 acgccagcga aatacatagt ggctgacaaa gaagttgttc agcacgccga tcaccacggc
     6181 gataagcgca ataccgagaa acacccccac ttcatgataa aattgaccaa gagtgacctt
     6241 gtgcggcgag ttgagcgccg tttgaatcaa atcatagaat ggcgcgtacc aggcgttaac
     6301 cgcgacgcca acctccacca aaaaccaggt gacaaaaata atgagcgagg tgccaagtat
     6361 cgaccagtac tgccagcggt gcgggctata gatgaaccag aacgttgcaa ataatcccac
     6421 gcaaatcagg taataagcat aaaaaatcag atagtccagc aaccagaagc gcgctgcgct
     6481 gataggcact tcatcggatg cccctacaag tcgcgccacc caatctcctc ctcccgcctg
     6541 ccagaaaatg acagcgatca gcgcccaaac aaacgccgac atgaaaaacg gccctggctt
     6601 tgggaaaaaa gatttaaaca tcatgctctc ctgctaactt cttatcttta ttacggctgc
     6661 tgtgacggcg gcaatagcac gccatgccca cggctaaacc aggcattgtg acctacgttg
     6721 tgacgcttag ttcgcatttc tgctcaacag aattgtttcg acgagtttca tactcagcag
     6781 gcacgctgac gctatcaggt tatcacaagc gctttatcac aaaagtaaac attctccatc
     6841 acgaaaaccc gccgttacgt tttttcaccc acttttttct ctttaacgtt ttgcaatgtg
     6901 ccgccgggta gtataaatac gcataaccac cgttatttca cttatggaca tcaccgttga
     6961 aacgtagtct gctttttact gccatgctgt ttgcggcatc acttacttct gtccaggcgg
     7021 ctcagccgat tgccgatccg gtttttgcct ctgatatcgt tgatcgttat gccgagcata
     7081 tcttttatgg tagcggcgcc acgggcatgg cgctggtggt gatcgacggc aatcaacgcg
     7141 tgtttcgtag tttcggtgac accagaccgg gcaataatgt tcgtccacag cttgactcgg
     7201 tcattcgtat cgcttctctc accaagctca tgaccagtga aatgttggta aaattgctcg
     7261 atcagggaac ggtaaaatta aacgatccgc tcagcaaata tgcgcctccc ggcgcgcatg
     7321 tcccgacgta tcaaggcacg ccgattacgt tggtcaactt agcgacccac accagcgcgc
     7381 ttccgcgaga acagcccggc ggcgcggcgc atcgtccggt atttgtctgg ccaacccgcg
     7441 aacaacgctg gaactggctc tccacagcaa cgttaaaagt cgcgcccggt tcacaggcgg
     7501 cctattccaa tctggcgttc gacctgttag ccgacgcgct ggcgaccgcc tccggcaaac
     7561 cttatacgca actgtttgaa gaaaagatta cccgcccgct gggaatgaaa gacaccacgt
     7621 ttaccccctc tcccgatcag tgtaagcgtc tgatggtggc agagaaaggc gcaagcccct
     7681 gtaataatac gctggctgcc attggcagcg gcggagtcta ttctacgcca ggagatatga
     7741 tgcgctggat gcaacagtat ctgtcgtcag atttctatca ccgtagccat caggccgatc
     7801 gtatgcaaac gttgatttat cagcgcgcac agttaaagaa aatcatcggg atggacgtac
     7861 cgggtaaagc cgacgcgctc ggtctgggct gggtctatat ggcgccaaaa gacggacgtc
     7921 ctggcattat ccagaaaacg ggaggcggcg gcggttttat tacctatatg gcgatgatcc
     7981 cacaatataa tattggcgct tttgtggtcg taacccgttc ccccctcacc cgttttacca
     8041 atatgagcga cgggattaac gatttggtta ctgagctaag cggcaataaa ccgattgcta
     8101 ttcctgcatc ctgagtcgtc gcgcctcgcg ctatatcaga cgaggcgcga catttttgtt
     8161 aatattcgga gggcaaacgg ttaatactga tcaatttgcc tttattcatt tcaatgtaat
     8221 tacccttacg cagggccgcg agaacttccg ccaccaccga tcgcgatacg cgcgttcgtt
     8281 gatgtatata attcataaca ccaatacgtg agcgaagttc ttcatcccac tcaatcattg
     8341 tcattaacgt cgcacgaatc tggtcgtaag aattattacc aatgagctgc ttgtcacgaa
     8401 gctccagtac ctgacttttc catactatcc aacagaaggc ttcacgccac agttggttct
     8461 gctcaatgat ggcgagagtt tgtgatgatg agaggcgata accgatgcaa ccgctctccg
     8521 caattaattt atattgtgcc tcttttttcg ccacgccatc ggctaagcca aaaataaaag
     8581 gggcctgcac aataccaata agaactttat caccccgaac taacgaaaca accccctcta
     8641 aaataacaaa ggtatgggta ttactttcat caggtgaaca gataatctct ttatcgttaa
     8701 caaactcgaa acgcgtacca tgcttagaaa ggcatttatc gagtctgttg aattcctgta
     8761 gtggcttgtt taaagataac atatgcattc cttgcaataa tgcccgtcaa gtccttgacg
     8821 ggcatttttc agtttaaatt acttttattt ctcctgagag aaaatgatta ccaggtatat
     8881 ttaacaccaa cgtttgcaga ccagtcttga tcaacatcac cgccgccgag gtagttagca
     8941 tcggtgtagg cgctgaagtt cttcgtgaag ctgaactgag tacccagacc aacacgtacc
     9001 gcaaaacctt ctacgccgtt gtcgatagag tcgccgttta cgtcagcatc gttgttggag
     9061 tcgtcgtaaa cgtaagccag tttgaagtac ggggtcagcg cctgatcttc gctgtaagtg
     9121 aaggtataac ctgcatctac accgagttca taacgcatgc tgtcgtaaga ctgaccgtca
     9181 actttcatgt cgttgctcag ctggtagtcg tcgccggact ggaacagacc ggatacgctg
     9241 ccgtaaggcg ttacgtagcc tgcatcaccc agcttcagat cataacccag tttcaagccg
     9301 aagccccagg cgtcagaaga ggtgttgccg tcaacgtaag taccgtcgct catgttagca
     9361 gacaaatcgt tgttgaagtg agagtagctt aagttaccgt caacaaagat gttgtttgcg
     9421 aaacgagcgg aagagtagat gtaggcagac tggctgtcct gatccacctg accggtacga
     9481 tcgctcagat cgcctttcgc gaagcctgct gccgcaccaa cgatccactt agcgttgtta
     9541 ccgtcaactt tggtatcaac accgaccatg atgccattaa catcctgatc gtagttaatg
     9601 gtgccgttgt cgccgttgaa gttaccgccg aagtagctta cccatgcgcc gccgttatcc
     9661 gccaggccat gacgagcgtt ggtcagacga gtaccaacgg tgtcttgttc caggttccag
     9721 atattggtgt tcgcagaagg aatgctcagc gccatgttag cgtagtcggt cagttccatc
     9781 tgttccagca cgacagtgtt gccttcctgc ttagcctgat aggtgtaagc acccaggtca
     9841 gctttgtttg ctgcagagaa ggtagcgtcg gtgtttatgt cattgacata aatcagctcg
     9901 ttacctttgt aatccgcaac agaaccggca ccagtagcgt tgtcgatgcg cactttataa
     9961 ttaccagtgg ccgctacaac gttgtcagtg gtgctacttg catcagcctc gtcaccattg
    10021 ttgatatcgc cgttaccgtt gatagtcaga tgaccatcag agttcatcgc gacaacgccg
    10081 taaccgtagt tagcctgagt ggtatcccag gtacggtcgt tcaccaaatc ggcatttagg
    10141 gtatagtcat tgctatgaat gttgaacaca ccagcataaa cattgccatt attatccgca
    10201 acgttactgc tagtcagttc taacgtatca gtatcaatga cgctatctgc gtttgtattg
    10261 ttggtttgaa tatctaacat accaccgtga gttacggtaa tagtattagc atacagtgca
    10321 tcatcactcc atgcactgct gacatcatca gccaaagtaa ctgtactgaa agtatcaacg
    10381 gtcaggtgat cagtatcaac gtagccacct tccccgatgt tcatagctga accaccgttt
    10441 agagtaatgg tatcagcggt taaattggag ccattagcga catcaacctg agagccgcta
    10501 tttactgcta aggtatctat tacagatgtt tttgtggtat cccactcaga tccattattc
    10561 aagctgacgt caaagatacc gctctggaag gaagcagcac tattaacacg tccccaggca
    10621 tcataattag tcgagtctgg atctaagcta ttggcatcaa catcatagaa ttgcactgga
    10681 tccattgact gtgaatcatt aaccgccgca ccaacccatt tagtgttatt cagggtcaat
    10741 gtcaggtgat caacgttttg atcatcatct gcccaaccac cattcgtata gacagtagtg
    10801 gaatcatcga ctaaacggcc attagaatag aaattataat tccaggagct ctcaaggacg
    10861 acatccccca gtaactgcga gtcggtaaac gtaacgttgt ttaccatacg gtaatttgaa
    10921 taaggatcgt caacaaaagc taaagcaaca tcatctttat tccaaccatt gccattataa
    10981 tcgcttggtt cacttgaatt gccaaaatgg ccttgttcct catcttcgga ccaggagcct
    11041 gaagttacag ttgaattcgc tacgttaata gtgttatccc actgatgtgc ttcggttgta
    11101 tatgttgaat tgccaagatc attttggtaa agagcaatac cagccacatg agaattgtta
    11161 gtaatattaa tattactttc aacatcaagg gttatagcag tgcctaaacc agcagtaacc
    11221 aatttgtcat aatcggtttt gactgttttt ccatcagaat cgagataggt atcagtgaag
    11281 taaaacgcct caaagtcatc atcgattgta gaattagaaa tgtttagatt aaaagtatca
    11341 tcatcaaccc aatcatgggt cgtataatca ctaccgttag tccaaacata ttgaccgtag
    11401 cccatctggt aagaagtaat cataccatga atggttgagt tggtaacatc caatgtattc
    11461 gcagtatcat tggcgtaatc atgattcaga taataagttg aaataacgcc atttacagtg
    11521 tcaccagtaa attttgtatc aaaatagccg ctatcactag ctggggtgtt gtagacataa
    11581 ccaccataag ttagatagtc atggtcgttg gtatcatccc agccaaaaac agtggccgca
    11641 tcgtcatggt acccaaaagt atcgtatgta gtagcattcg cctgagaagt gattgccaga
    11701 gtgcaagcca atgctaattg tgagactaca agtttctttt tccaggagtg cattt
//
LOCUS       DAJVSD010000135        11719 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.135, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000135 DAJVSD010000000
VERSION     DAJVSD010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11719
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.135"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            120..1295
                     /gene="entC"
                     /locus_tag="OQP62_002867"
     CDS             120..1295
                     /gene="entC"
                     /locus_tag="OQP62_002867"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase EntC"
                     /protein_id="HCS1722369.1"
                     /translation="MDMSLAEDAQETMATLAPDRFFFMSPYRSFTTSGCFARYTEPAV
                     AGDSPDSPFQQKLRQQFAEAKSQGIANPILVGAIPFDTRQPSSLFIPMAWQSFSRQQK
                     QRTARYFTDHQPLTVTARKAIPEQDAFEAMVARAAMLTATPDVDKVVLSRLIDITTDV
                     AVDSGALLERLVAQNPVSYNFHVPLADGGVLLGASPELLLRKEGERFSSLPLAGSARR
                     QPDDVLDREAGNRLLASQKDRHEHELVTQAMKQILRDRSTELQLPSSPQLITTPTLWH
                     LGTPFEGKANAGENALTLACLLHPTPALSGFPHQVAKKLIAELEPFDRELFGGIVGWC
                     DAEGNGEWVVTIRCAKLHGNQVRLFAGAGIVPASSPVGEWRETGVKLSTMLNVFGLH"
     gene            1305..2915
                     /gene="entE"
                     /locus_tag="OQP62_002868"
     CDS             1305..2915
                     /gene="entE"
                     /locus_tag="OQP62_002868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2,3-dihydroxybenzoyl)adenylate synthase EntE"
                     /protein_id="HCS1722370.1"
                     /translation="MRIPFTRWPDEFARRYREKGYWQDVPLTDILTRHADSDKTAVIE
                     GERAFSYRQLNQAADNLACSLRRQGIKPGETALVQLGNVPELYITFFALLKLGVAPVL
                     ALFSHQRTELNAYAMQIAPTLVIADRQHTLFAGEDFLNRFVAEHRSARVVLLRNDDGD
                     HSLDAAMRQAAEGFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSNEIC
                     GFNEETRFLCAIPAAHNYAMSSPGALGVFLAKGTVVLATDPGATLCFPLIEKHQINAT
                     ALVPPAVSLWLQAIQEWGGNAPLASLRLLQVGGARLSATLAARIPAEIGCQLQQVFGM
                     AEGLVNYTRLDDSPERIINTQGRPMCPDDEVWVADADGNPLPPGEIGRLMTRGPYTFR
                     GYFNSPQHNVSAFDANGFYCSGDLISIDQDGYITVHGREKDQINRGGEKIAAEEIENL
                     LLRHPAVIHAALVSMEDELLGEKSCAYLVVKEPLRAVQVRRFLREQGVAEFKLPDRVE
                     CVASLPLTPVGKVDKKQLRQRLASRSPL"
     gene            2929..3786
                     /locus_tag="OQP62_002869"
     CDS             2929..3786
                     /locus_tag="OQP62_002869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase"
                     /protein_id="HCS1722371.1"
                     /translation="MAIPKLQSYALPTALDIPTNKVNWAFEPERAALLIHDMQDYFVS
                     FWGRNCPMMDQVIANIAALRQYCKEHHIPVYYTAQPKEQSDEDRALLNDMWGPGLTRS
                     PEQQKVVEALTPDEADTVLVKWRYSAFHRSPLEQMLKDTGRNQLIITGVYAHIGCMTT
                     ATDAFMRDIKPFMVADALADFSREEHLMALNYVAGRSGRVVMTESLLPTPIPASKAAL
                     RALILPLLDETDEPLDDENLIDYGLDSVRMMGLAARWRKVHGDIDFVMLAKNPTIDAW
                     WALLSRGVE"
     gene            3786..4541
                     /gene="entA"
                     /locus_tag="OQP62_002870"
     CDS             3786..4541
                     /gene="entA"
                     /locus_tag="OQP62_002870"
                     /EC_number="1.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
                     EntA"
                     /protein_id="HCS1722372.1"
                     /translation="MASFDFSDKTVWVTGAGKGIGYATALAFVDAGARVIGFDREFTQ
                     ENYPFATEVMDVADAAQVAQVCQRVLQKTPRLDVLVNAAGILRMGATDALNVDDWQQT
                     FAVNVGGAFNLFSQTMAQFRRQQGGAIVTVASDAAHTPRIGMGAYGASKAALKSLALT
                     VGLELAGCGVRCNVVSPGSTDTDMQRTLWVSEDAEQQRIRGFGEQFKLGIPLGKIARP
                     QEIANTILFLASDLASHITLQDIVVDGGSTLGA"
     gene            4544..4957
                     /gene="entH"
                     /locus_tag="OQP62_002871"
     CDS             4544..4957
                     /gene="entH"
                     /locus_tag="OQP62_002871"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proofreading thioesterase EntH"
                     /protein_id="HCS1722373.1"
                     /translation="MIWKRHLTLDELNATSQNTLVAHLGIVYTRLGDDVLEAEMPVDA
                     RTHQPFGLLHGGASAALAETLGSMAGYLMTRDGQCVVGTELNATHHRAVSQGKVRGVC
                     LPLHLGRQNQSWEITLFDEQGRRCCTCRLGTAVMG"
     gene            5139..7244
                     /gene="cstA"
                     /locus_tag="OQP62_002872"
     CDS             5139..7244
                     /gene="cstA"
                     /locus_tag="OQP62_002872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein CstA"
                     /protein_id="HCS1722374.1"
                     /translation="MNKSGKYLVWTALSVLGAFALGYIALNRGEQINALWIVVASVCV
                     YLIAYRFYGLYIAKKVLAVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPL
                     VGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGATAG
                     VIVLVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLAIFMGIYLRYLRPGRI
                     GEVSVIGLVFLIFAIISGGWVAASPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLL
                     APRDYLSTFLKIGTIVGLAVGILIMRPTLTMPALTKFVDGTGPVWTGDLFPFLFITIA
                     CGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFA
                     MNSPMAVLAPAGTADVVASAAQVVSSWGFAITPDTLHQIANEVGEQSIISRAGGAPTL
                     AVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVVSPG
                     LKRTDSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLC
                     AVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQKAFSPDAKIGFLAIANKFQAMIDSG
                     NIPPQYTESQLAQLVFNNRLDAGLTIFFMVVVVVLAVFSIKTALAALKIDKPTANETP
                     YEPMPENVDEIVTQAKGAH"
     gene            7308..7505
                     /locus_tag="OQP62_002873"
     CDS             7308..7505
                     /locus_tag="OQP62_002873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HCS1722375.1"
                     /translation="MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTY
                     EEFFRERQDARYGGKGGARCC"
     gene            complement(7541..8629)
                     /locus_tag="OQP62_002874"
     CDS             complement(7541..8629)
                     /locus_tag="OQP62_002874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS1722376.1"
                     /translation="MNHTEIRVVTGPANYFSHAGSLERLTDFFTPEQLSHAVWVYGER
                     AIAAARPYLPEAFERAGAKHLQFTGHCSERHVAQLAHACNDDRQVVIGVGGGALLDTA
                     KAHARRLALPFVAIPTIAATCAAWTPLSVWYNDAGQALQFEIFDDANFLVLVEPRIIL
                     QAPDDYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINSACAIRDLLLTSSEQALA
                     DKQQRRLTQAFCDVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTVLPQTEKFLHGT
                     KVAYGILVQSALLGQDDVLAQLITAYRRFHLPTRLSELDVDIHNTAEIDRVIAHTLRP
                     VESIHYLPVTLTPDTLRAAFEKVEFFRI"
     gene            8756..9916
                     /locus_tag="OQP62_002875"
     CDS             8756..9916
                     /locus_tag="OQP62_002875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HCS1722377.1"
                     /translation="MRNNPLIPKSKLPNLGTTIFTQMSALAQKHQAINLSQGFPDFDG
                     PSYLHERLAYHVAQGANQYAPMTGAQALREAIADKTAEIYGYRPDDVSDITVTAGATE
                     ALYAAITALVRAGDEVICFDPSYDSYAPAVALSGGVLKRIALTPPHFRVDWQAFSALL
                     SERTRLVILNTPHNPTATVWRQADIEALWQAIGEREIYVLSDEVYEHICFAAEGHASV
                     LAHPQLRERAVAVSSFGKTFHMTGWKIGYCVAPAAISAEIRKVHQYLTFCVNTPAQLA
                     LADMLRAAPEHYRALPDFYRKKRDVLVNALAQSRLKVLPCEGTYFLLIDYSAVSTLND
                     VEFCQWLTEEVGVAAIPLSVFCAAPFPHQLIRLCFAKQESTLLAAAERLCKL"
     gene            complement(9917..10534)
                     /locus_tag="OQP62_002876"
     CDS             complement(9917..10534)
                     /locus_tag="OQP62_002876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB-like nuclease domain-containing protein"
                     /protein_id="HCS1722378.1"
                     /translation="MQHRLTTEITHFLSGLPEEERIAAINEFRRAIHNVSPFRDEPVD
                     CVLWVKNDHISPNDYNPNNVAPPEKKLLLKSIEKDGFTQPIVVVKANTEEYEIVDGFH
                     RHELGKGKAVLKRRLKGYLPVACLDRERHERMAATIRHNRARGRHQIHAMSEIVRELS
                     QLGWDESKIGQELGMDADEVLRLKQINGLQELFADRRFSRAWTVK"
     gene            complement(10507..>11719)
                     /locus_tag="OQP62_002877"
     CDS             complement(10507..>11719)
                     /locus_tag="OQP62_002877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase"
                     /protein_id="HCS1722379.1"
                     /translation="EQNVLEAAQERITWTLETLPRVCVSFSGGKDSGLMLHLTATLAR
                     KMNKKIHVLFIDWEAQFSCTIAYIESLREYYADVIERFYWVALPLTTQNSLSQYQPEW
                     QCWQPGTDWVRQPPEDAITDPAFFSFYQHGMTFEQFVRDFADWFSEKRPAAMLVGIRS
                     DESYNRFVAIANSHKLRFADDKPWTTLAPKGHTWYIYPIYDWKTADIWTWFAKTGKSC
                     NPLYNLMYQAGVPVRYMRICEPFGPEQRQGLWLYHVIEPERWAAMYARVSGVLSGGIY
                     AGQDSHFYGHRKILKPDHLNWEEYALLLLHSMPEVTAEHYRNKIAVYLQWYKKKGMNT
                     IPQTQQGDIGSRDIPSWRRICKVLLNNDYWCRALSFSPTKPKSYQRYNERMKAKRQEW
                     GILCNTDSQPK"
BASE COUNT         2477 a         3037 c         3459 g         2746 t
ORIGIN      
        1 ggcaagggaa gaatccccgc gggcatagat aactgtgtga ccggggtttc tgatcgcagc
       61 caacaaagag gcagcttgaa agatgaagtg tatataagcc tttatcattg gaggatgata
      121 tggatatgtc actggccgag gacgctcagg agacaatggc aacgcttgct cccgatcgct
      181 ttttcttcat gtcgccgtat cgcagtttta ccacttccgg gtgcttcgcc cgttataccg
      241 agcctgcggt tgccggagat tcgccggata gccctttcca gcagaaattg cgccagcagt
      301 ttgccgaggc caaatcgcag ggcatcgcca accctatcct ggtgggggcg atcccctttg
      361 atacccgtca gccgtcgtcg ctatttatcc cgatggcgtg gcagtccttt tcccgccagc
      421 aaaagcagcg cacggcgcgt tattttactg accatcagcc gctgacggtg acggcgcgaa
      481 aggcgattcc ggagcaggat gcttttgaag cgatggtcgc acgcgcggct atgctgaccg
      541 ccacgccaga cgtcgataaa gtggtgcttt cccggctgat agatatcacc actgatgtgg
      601 cggtggatag cggagcattg ctggagcggc tggttgcgca gaatccagtt agttacaact
      661 tccatgtgcc actggcggat ggcggcgttc tgctgggcgc cagccccgaa ttgctgctac
      721 gcaaggaggg cgagcggttt agttcgctgc cgttagcagg ctcggcacgc cgacagcccg
      781 atgacgttct ggatcgcgag gcgggaaacc gactgctggc ttcacaaaaa gatcgccatg
      841 aacatgagct ggtgacgcag gcgatgaagc agatcctgcg cgatcgcagc acggaactgc
      901 aattaccttc ctctccgcag ttgatcacca cgccgacgct atggcatctc ggtacgccgt
      961 ttgagggcaa ggccaacgcc ggagaaaacg cgcttacgct ggcctgtctg ctgcatccga
     1021 cccctgcgtt aagcggtttc ccccatcagg tcgcgaaaaa gctgattgct gaactggagc
     1081 cgttcgatcg tgaactgttt ggcggcattg tcggctggtg cgatgccgaa ggaaacggcg
     1141 agtgggtagt gacgattcgt tgtgcgaaat tgcacggtaa tcaggtgcgc ctgttcgccg
     1201 gcgccgggat tgttcctgcc tcttcgccag tcggcgagtg gcgggaaacc ggcgtcaagc
     1261 tctctacgat gttgaacgtt tttggactgc attaaggaac gatgatgcgt atacctttca
     1321 cccgttggcc ggatgaattt gcccgccgtt atcgtgaaaa aggctactgg caagacgtgc
     1381 cgttgaccga tattctgacc cgccacgctg acagcgataa gacggcggtc attgaaggcg
     1441 agcgcgcatt cagctatcgc cagctaaacc aggccgcgga taatctggcc tgcagtttac
     1501 gccgtcaggg catcaaacct ggcgaaaccg ctctggtaca actggggaat gtaccggaac
     1561 tgtatatcac ctttttcgcc ctgttgaagc ttggcgtagc gcccgttctg gcgctgttta
     1621 gccatcaacg taccgaactt aacgcctatg cgatgcagat cgcgccgacg ctggtgattg
     1681 ccgatcgcca acatacgctg ttcgccgggg aggactttct caacaggttt gtggctgaac
     1741 accgctctgc gcgggtggtg ttattgcgca acgacgacgg cgatcacagc ctggacgcgg
     1801 cgatgcggca ggcggcggaa ggtttcaccg ccacgccatc acctgctgac gaagtggcct
     1861 actttcagct ttccggcggt actaccggca cgccaaagct tattccccgt acccataacg
     1921 actattacta cagcgtgcgc cgcagcaatg agatttgcgg tttcaacgag gagacgcgtt
     1981 ttctgtgcgc gattcccgcc gcgcataact acgccatgag ttcgccgggc gcgctgggcg
     2041 tttttctcgc caaaggaacg gtagtgctgg cgaccgatcc tggcgccacg ctctgtttcc
     2101 cgctgatcga aaaacaccag attaatgcca cggcgctggt gccgcccgcg gtcagtctat
     2161 ggctacaggc tatccaggag tggggcggca atgcgccgct ggcgtcatta aggttattgc
     2221 aggttggcgg cgcgcggctt tctgcgacgc tggccgcccg tattccggct gaaattggct
     2281 gtcagttgca gcaggtcttc ggcatggcgg aagggttagt gaactatacc cggctggacg
     2341 atagcccgga acggattatc aatacccagg gaagacccat gtgtccggac gacgaagtgt
     2401 gggtggcgga tgccgacggg aatccactgc cgccgggcga gattggtcgt ctgatgacgc
     2461 gcggccccta tacttttcgc ggctatttca acagtccgca acacaatgtc agcgcctttg
     2521 acgccaacgg tttttactgt tccggcgatc tgatctccat tgatcaagac ggctacatca
     2581 ccgttcacgg gcgtgaaaaa gatcagatca accggggcgg cgagaagata gccgccgaag
     2641 agatagaaaa cctgttactg cgccacccgg cggtgatcca tgcggcgctg gtcagcatgg
     2701 aagatgaact gctgggggaa aaaagttgcg catatctggt ggtaaaagag ccgctgcgag
     2761 cggtacaggt acgccgtttc ctgcgagagc agggcgtggc ggaatttaaa ttaccggatc
     2821 gcgtggagtg cgttgcgtca ctgccgctga cgccggttgg taaagtcgat aaaaaacaat
     2881 tacgccagcg gttggcgtca cgttcaccgc tctgaaggag aaagagagat ggcaatcccg
     2941 aaactacagt cttacgcgct gcccaccgca ctggatatcc cgaccaacaa agtgaactgg
     3001 gcatttgagc cggagcgcgc ggcgctgctc atccacgata tgcaggatta ctttgtcagc
     3061 ttttggggcc gcaattgccc aatgatggac caggtaattg ccaatatcgc cgctctgcgc
     3121 cagtactgta aggaacatca tatcccggtt tattacaccg ctcagccgaa agagcaaagc
     3181 gatgaagatc gcgcgttact caatgatatg tggggaccgg gactgacgcg ctctccggaa
     3241 cagcagaagg tggtagaagc cttaacgccg gatgaggcgg atacggtgct ggtgaagtgg
     3301 cgttatagcg cgtttcaccg ctcgccgctg gaacagatgt taaaagatac cggacgcaat
     3361 cagctcatca ttaccggcgt atatgcacat attggctgta tgaccaccgc taccgatgcg
     3421 tttatgcgcg acattaagcc gtttatggtg gcggatgcgc tggcggattt cagtcgggaa
     3481 gagcatctga tggcgctgaa ctatgtggcg gggcgttccg gtcgcgtcgt catgacagag
     3541 tcgctgctgc cgacgccgat tcctgccagt aaagcggcgc tgcgggcgtt gattctgccg
     3601 ttactggatg agaccgacga gccgctggat gatgaaaacc tgattgatta tggcctggat
     3661 tcagtacgca tgatggggct ggcggcgcgc tggcgtaaag tacacggcga tatcgacttc
     3721 gtgatgctgg cgaaaaatcc gaccattgac gcctggtggg cgctgctttc tcgcggggta
     3781 gagtaatggc cagctttgat ttttcagaca aaacggtatg ggtgaccggg gcggggaaag
     3841 ggatcggtta cgcgacggcg ctggcgtttg tcgacgccgg ggcgcgggtg atcggcttcg
     3901 atcgcgaatt tacgcaagag aattatccct ttgctaccga agttatggat gtggcggatg
     3961 ccgcacaggt tgcgcaggtg tgccagcgtg tgttgcaaaa aacgccgcgg ctggatgtgc
     4021 tggtcaacgc cgccggtatt ttgcgtatgg gagcgaccga cgcgcttaac gtcgacgact
     4081 ggcagcagac atttgcggtc aatgtgggcg gggcatttaa cctgttttcc cagacgatgg
     4141 cgcagtttcg ccgtcagcag ggaggggcga ttgtcaccgt agcctcagat gcggcgcata
     4201 cgccgcgtat cggtatgggc gcttacggcg cctctaaagc ggcgctgaaa agcctggcgc
     4261 taaccgtagg gctggagctg gcgggctgcg gggtacgctg taatgtggtg tcgccgggct
     4321 cgaccgacac cgatatgcag cgcacgttat gggtgagtga agatgccgaa cagcagcgca
     4381 ttcgcggttt cggcgaacag tttaagctcg gcataccgct cggtaaaatc gcccgtccgc
     4441 aggagatagc caataccatt ttgtttcttg cctccgatct ggccagccac attaccttgc
     4501 aggatatcgt ggtggacggc ggttcaacat tgggagcctg acgatgatct ggaaacggca
     4561 tttaacgctg gatgaattga atgctaccag tcagaacacg ctggtggcgc atctgggcat
     4621 tgtttacacc cgtctgggcg atgacgtgct ggaggcggaa atgcccgtcg atgcccgcac
     4681 tcatcaaccg tttggtctgc tacatggcgg cgcatcggca gcgctggcgg agacgttagg
     4741 atcaatggcg ggttatctga tgacccgcga cgggcagtgc gtggtcggga ccgagttaaa
     4801 cgccacccat caccgcgccg tctcgcaggg gaaagtacgc ggcgtttgcc tgccgctgca
     4861 tctggggcgg cagaatcaaa gctgggaaat tacgctcttt gacgagcagg ggaggcgctg
     4921 ctgcacttgt cgcctgggaa cggcggtaat gggatagttc tggcaaagta aaatgcaatt
     4981 gcagcattaa cgaagaaagg aagtgatctg gttaacactg taatgtaaaa aatgggtaac
     5041 aatccggttt tatcatgttg ttgtgttgtt aattacggta aaggtgtcat agaaacaaaa
     5101 tgtaacatct ctctggaaca cccaaacgga caacaactat gaataaatca gggaaatacc
     5161 tcgtctggac agcgctctca gtattgggtg cgtttgccct aggctatatt gcgttaaatc
     5221 gtggggaaca gatcaacgcg ctatggatcg tggtggcgtc ggtctgtgtc tatcttattg
     5281 cgtatcgttt ttatgggctc tatatcgcca aaaaagtgct ggcggttgac ccaacgcgta
     5341 tgacgcccgc ggtacgtcat aatgatggtc tggattatgt cccgaccgat aaaaaagtgc
     5401 tgttcggtca ccattttgcg gccattgctg gcgcaggtcc gctggtcggg ccggtactgg
     5461 cggcgcagat gggctatctg ccggggatga tctggctgct ggcgggcgtc gtgctggcgg
     5521 gagcggtgca ggactttatg gtgctgttcg tctcgacccg gcgcgatggg cgttcgcttg
     5581 gcgagctggt taaagaggag atgggcgcga cggcaggggt gatcgtgctg gtagcctgct
     5641 ttatgatcat ggtgatcatt ctggccgtcc tggcgatgat cgtggtgaaa gcgctgaccc
     5701 atagcccgtg gggaacgtac actgtcgcgt tcactattcc actggcgatt tttatgggca
     5761 tctatctgcg ttatctgcgt ccggggcgca tcggcgaggt gtcggtcatt gggctggtat
     5821 ttcttatttt cgctattatt tccgggggat gggtggcggc aagcccaacc tgggcgccgt
     5881 actttgattt tactggcgtg cagcttacct ggatgctggt gggttatggt tttgtcgcgg
     5941 cggtactgcc ggtctggctg ctgctcgcgc cgcgtgatta cctctctacc ttcctgaaaa
     6001 ttggtacgat tgtcggtctg gcagtcggga ttctgattat gcgtccgacg ctgaccatgc
     6061 cggcgctgac caaatttgtt gatggtaccg gacccgtctg gacgggcgac ctgttcccgt
     6121 tcctgtttat taccatcgcc tgcggcgcgg tatccggttt ccatgcgctc atctcctccg
     6181 gcacgacgcc gaagatgttg gccaacgaag gccaggcctg ctttatcggc tacggcggga
     6241 tgttaatgga atctttcgtc gccattatgg cgctggtctc cgcctgtatt atcgatccgg
     6301 gcgtttactt tgcgatgaat agcccgatgg cggtactggc gccagcgggg acagcggatg
     6361 tcgtagcttc tgccgcgcag gtggtcagta gttgggggtt cgctatcacg ccggatacgt
     6421 tacaccagat tgccaatgaa gtcggcgaac aatccattat ctcccgcgca ggtggtgcgc
     6481 caacgctggc ggtagggatg gcctacattt tacatggcgc gttgggcggc atgatggatg
     6541 tggcgttctg gtatcacttc gccattctgt ttgaagcgct gtttattctg acggcggtgg
     6601 atgcgggtac ccgtgcggcg cgctttatgt tgcaggattt gttgggcgta gtgtcgccag
     6661 ggctgaaacg taccgattcg ctgccagcga acctgcttgc tacggcattg tgcgtgctgg
     6721 cgtgggggta tttcctccat cagggcgtgg tcgatccgtt gggcggtatt aacaccctgt
     6781 ggccgctgtt tggcatcgcc aaccagatgc tggcggggat ggcgctgatg ctttgcgccg
     6841 tggtactttt caaaatgaag cgtcagcgtt atgcgtgggt cgcgctggtg ccgacggcct
     6901 ggctgctgat ttgtacgctg acggcgggct ggcagaaagc gtttagtccg gatgcgaaaa
     6961 tcggcttcct ggccattgcc aataaattcc aggcgatgat cgacagcggc aatattccgc
     7021 cgcagtacac cgaatcgcag ctcgcgcagt tggtattcaa taaccgtctg gatgccgggc
     7081 taaccatctt ctttatggtg gtggtcgtgg tgctggcggt cttctctatt aagacggcgc
     7141 tggccgctct gaagattgat aaaccgacgg cgaatgaaac gccgtatgag ccgatgccgg
     7201 aaaatgtgga tgagatcgtg acgcaagcga aaggcgcgca ctaatctttt ttcatcaata
     7261 gccctctcca gaataaggag agggcgtttg gatgacaggt gacaacgatg ttcgatacgc
     7321 tttcgaaagc cggaaaatat ctgggacagg cagcaaaaat gatgattggc gtgccagact
     7381 acgacaacta tgtggaacat atgcgcataa cgcatccgga tcagacgccg atgacctatg
     7441 aagaattttt ccgcgagcgg caggatgcgc gctatggtgg aaaaggcggc gcgcgttgct
     7501 gctgatggtt gccaggtctg acaagcgcaa cgccaccagg ctatattctg aaaaattcaa
     7561 ctttttcaaa cgccgcacgc agggtgtctg gcgttaacgt caccggtaaa tagtggatag
     7621 attcgaccgg gcgcagggta tgcgcgatga ccctatcgat ctctgcggtg ttatgaatat
     7681 ccacgtccag ttcgctaagc cgggtcggca gatgaaatcg ccggtacgct gtaatcaatt
     7741 gcgccagcac gtcatcttgt cccagtagcg cgctttgcac cagaatgcca taagccactt
     7801 tcgttccgtg caggaatttt tccgtttgcg gcaggacggt cagaccgttg tgtaccgcat
     7861 gggcggcggc gacacgggta tagcgttccc cgaggccgcc gaccataccg ccgccagcaa
     7921 taatcgcatc caccacgtcg caaaatgcct gggtcagccg acgctgctgt ttatccgcta
     7981 atgcttgttc gctgctggtc agtaggagat cgcgaatagc gcacgcgctg ttaatgccca
     8041 gccttacggt caatggcaac gtttcaggct gcggcgcaag cacaacggct tcataccatt
     8101 tcgccagcgt atcgccaatg ccagctaaca gatagtcatc gggcgcctgc agaataatgc
     8161 gcggttcgac cagcaccaga aaattggcat catcaaaaat ttcgaactgt aacgcctgtc
     8221 ccgcgtcgtt ataccagacg gaaagcggtg tccaggcggc gcaggtcgcc gcgatcgtcg
     8281 ggatagcgac aaacggcagc gccagacggc gggcgtgcgc tttggcggta tcgagcagcg
     8341 cgccgccgcc gacgcctatt accacctgac gatcgtcgtt gcaggcgtgc gccagttggg
     8401 caacatggcg ttcgctacaa tggccggtaa actgcagatg ttttgcgcca gcacgttcaa
     8461 acgcttccgg caggtaaggc cgggcggcgg caatcgcgcg ttcgccgtac acccaaacag
     8521 cgtgggaaag ctgttccggc gtgaaaaagt cggtcagtct ttcgaggctt cctgcatggg
     8581 aaaaataatt cgccgggccg gtaacgacgc ggatctcagt gtggttcatg ttgtgttgtc
     8641 cttagggtct tctcaccgct gttattatat ttagacatct aaacgtcttg attgccaaat
     8701 actaacaccc tgtgatagtg tgtcaacaac cacatcactg gcgggtatga agataatgag
     8761 aaataaccca ctgattccaa agagcaaatt gcccaatctt ggcaccacga tttttacgca
     8821 aatgagcgcg ctggcgcaga aacatcaggc aataaattta tcgcaaggct tccctgattt
     8881 tgatggtcct tcttatttgc acgagcggtt ggcttatcat gtcgcgcagg gcgcgaatca
     8941 atatgcgccg atgacgggcg cgcaggcgct gcgggaggcc atagccgata aaacggcgga
     9001 aatatatggt tatcgacccg atgacgtaag tgatatcacc gtcacggcgg gcgcgacaga
     9061 agcgctgtat gcggcgatta ccgcgctggt gcgggcaggg gatgaggtta tctgtttcga
     9121 tcccagttac gacagctatg ccccggccgt ggcgctttcc ggcggcgtgt taaaacgcat
     9181 agcgcttacg ccgccgcatt ttcgcgtcga ctggcaggcg ttttcggcgt tgcttagcga
     9241 gcgcacgcgg ctggtgatcc tcaatacgcc gcataatccc accgctaccg tctggcgtca
     9301 ggcggatatc gaggcgctgt ggcaggctat cggcgagcgg gaaatttatg tattaagcga
     9361 tgaagtgtac gagcatattt gttttgccgc cgaaggtcat gccagcgtac tggcgcaccc
     9421 tcagttacga gagcgggcgg ttgccgtttc atcgtttggt aaaacctttc atatgacggg
     9481 atggaagatt ggttactgcg ttgcgcctgc ggccattagc gccgaaatac gcaaagttca
     9541 ccagtacctg acgttttgcg tcaatacgcc ggcgcaactg gcgctggcgg atatgctgcg
     9601 cgccgcgccg gaacactatc gcgcgttacc cgatttttac cggaaaaaac gcgatgtgct
     9661 ggttaacgcg ctggcgcaaa gccgattaaa agtgctgccc tgtgaaggta cctatttttt
     9721 gttaatcgat tacagcgcag tgtcgacgct aaatgacgtt gagttttgtc agtggctaac
     9781 cgaagaagtc ggtgtcgccg ctattccgct ctctgtcttt tgcgccgccc ctttcccgca
     9841 tcagcttata cgtttatgtt tcgctaaaca ggaatcaacg ctgctggccg ccgcagagcg
     9901 cctgtgtaaa ctgtagttat ttaaccgtcc acgctctgga gaatcgacgg tctgcaaaga
     9961 gttcctgcag tccgttgatc tgtttcaggc gcaggacttc atcggcgtcc atacctaact
    10021 cctgtccgat tttgctctcg tcccagccta gctgagaaag ttcgcgtacg atttcggaca
    10081 tggcgtggat ctggtggcgt ccgcgcgcgc ggttatgccg gatggttgcc gccatccgtt
    10141 cgtgacgttc tctgtccaga cacgctaccg gcagataacc tttcaggcgc cttttcagga
    10201 ccgcttttcc tttgcccaac tcatgacggt gaaagccgtc tacaatctcg tattcctccg
    10261 tattggcctt taccaccaca atcggctgag taaagccatc tttttcaatc gatttaagca
    10321 gcaatttttt ctccggtggc gcaacgttat tcgggttgta gtcattaggc gaaatatgat
    10381 cgtttttcac ccacaggaca caatcgactg gctcatcgcg aaaaggacta acgttatgta
    10441 tcgcccttct aaattcatta atggcggcga tcctttcctc ttcaggcagt ccagagagaa
    10501 agtgagttat ttcggttgtg agtcggtgtt gcataagatc ccccattcct ggcgtttagc
    10561 tttcatgcgt tcgttataac gctggtaact cttaggtttt gtcggactga atgacagcgc
    10621 ccggcaccag taatcattgt tcagtaatac tttgcagatc cgtcgccatg acggaatatc
    10681 ccgcgatccg atatcgccct gctgcgtctg tggaatggtg ttcatgcctt ttttcttata
    10741 ccactgcaaa taaacggcga ttttattacg gtaatgttcg gcagtgactt caggcatact
    10801 gtgtagcagg agcagcgcgt actcctccca gttaaggtga tcgggtttta aaattttccg
    10861 gtggccgtaa aaatggctgt cctgcccggc gtatattcct ccgctgagta cgccgctgac
    10921 tctggcgtac atggccgccc agcgctcagg ttcgataaca tgatacagcc ataacccctg
    10981 ccgttgttcc gggccgaatg gttcgcaaat acgcatgtaa cggaccggta cgccagcctg
    11041 atacatcaaa ttatacaagg ggttacatga tttacctgtt ttggcgaacc aggtccagat
    11101 atctgcggtt ttccagtcat agatggggta gatataccag gtgtgcccct tgggggccaa
    11161 cgtggtccag ggcttatcgt cggcaaagcg cagcttatgc gagttagcga tagcgacaaa
    11221 ccggttatag gattcgtcgg aacgaatacc gaccagcata gcggcagggc gcttttctga
    11281 aaaccagtcg gcaaaatcgc gaacgaactg ttcaaaagtc atgccgtgtt gataaaagga
    11341 aaaaaaggcc ggatcggtaa tcgcatcttc tggcggttgt cgtacccagt cggttcccgg
    11401 ctgccaacac tgccactccg gctggtattg tgaaagggaa ttttgtgtgg ttaagggtaa
    11461 tgcgacccaa taaaaacgct caataacgtc cgcgtagtat tcacgtaacg attcaatata
    11521 agcgatagta caggagaatt gcgcttccca gtcaatgaaa agaacgtgga tctttttatt
    11581 cattttgcgc gccaacgttg ccgtcaggtg cagcataagt cctgaatctt taccaccaga
    11641 aaatgagacg cagacccggg gtaaagtttc cagggtccat gttatacgct cttgagccgc
    11701 ttccagaaca ttttgctca
//
LOCUS       DAJVSD010000136        11699 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.136, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000136 DAJVSD010000000
VERSION     DAJVSD010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11699
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.136"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            4..1035
                     /gene="asrA"
                     /locus_tag="OQP62_002878"
     CDS             4..1035
                     /gene="asrA"
                     /locus_tag="OQP62_002878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015461495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfite reductase subunit A"
                     /protein_id="HCS1722380.1"
                     /translation="MTPDEFSLLIQRLNKKWRVFAPSAEFRGGRFSDTDNIIYQRISG
                     WRDLIWHEKSHMSPNTIIAPITETLFYFDKNTIQIAETDTSPIIIFARACDINAMSRL
                     DYMYLSNGNNSDYSYQLLREHIRFVLIECEESFENCFCVSMGTNKTDCYSAAMRFSDE
                     GALVSIRDPFIEAAIQGLGQEADYTPSFVSENRETVVTPDSVCRDPQKIRDILTRHPL
                     WDAYDSRCISCGRCTTGCPTCTCYSVFDVAYDENPQRGERRRQWASCMVPGFSDMAGG
                     HGFREKPGERLRYRALHKVNDYKARNGIEHMCVGCGRCDDRCPQYIKFSLIINKMTAA
                     VRQALAEEA"
     gene            1039..1857
                     /gene="asrB"
                     /locus_tag="OQP62_002879"
     CDS             1039..1857
                     /gene="asrB"
                     /locus_tag="OQP62_002879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfite reductase subunit B"
                     /protein_id="HCS1722381.1"
                     /translation="MSHCSCHDKPQHSLLPAAYRILSITRHTPLEWNFRVAVDFPAHW
                     GQFVEVSLPRVGEAPISVSDYGDGWIDLLIRNVGKVTSALFTLKEGDNVWLRGCYGNG
                     YPVDTLRHKPLLVVAGGTGVAPVKGLMRYFVENPQEIGQLDMILGYKNRDCVLYKEEM
                     ATWHGKHNLVLTLDEGEADDRYQIGRVTDRLADMTLSDIDTMQAIVVGPPIMITFTVK
                     MLLQKGLKPEQIWVDYERRMACSVGKCGHCRMGEVYVCTDGPIFNYAVAQRFAD"
     gene            1868..2881
                     /gene="asrC"
                     /locus_tag="OQP62_002880"
     CDS             1868..2881
                     /gene="asrC"
                     /locus_tag="OQP62_002880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite reductase subunit C"
                     /protein_id="HCS1722382.1"
                     /translation="MSIDIDIIKARAKNEYRLSKVRGEAMISVRIPGGILPAHLLTVA
                     RDIAETWGNGQIHLTTRQKLAMPGIRYEDIDNVNAALEPFLREIEIELCDVQVEDTKA
                     GYLAIGGRNIVACQGNRICQKANTDTTGLSRRLEKLVYPSPYHLKTVIVGCPNDCAKA
                     SMADLGIIGVAKMRFTADRCIGCGACVKACSHHAVGCLALKNGKAVKEESACIGCGEC
                     VLACPTLAWQRKPDQLWQVRLGGRTSKKTPRVGKLFLNWVTEDVIKQVIVNLYEFEKE
                     MLGGKPIYLHMGHLIDKGGYLRFKERVLRGVQLNPEAMVAERIYWAEDESVARMHLKP
                     AGH"
     gene            complement(2882..3867)
                     /locus_tag="OQP62_002881"
                     /pseudo
     CDS             complement(2882..3867)
                     /locus_tag="OQP62_002881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461486.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nickel/cobalt transporter"
     gene            complement(3858..4496)
                     /locus_tag="OQP62_002882"
     CDS             complement(3858..4496)
                     /locus_tag="OQP62_002882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1007 family protein"
                     /protein_id="HCS1722383.1"
                     /translation="MKPVKRSALILFLAVLSFVAAAHPHSFIRLQTQVVSENEQFVAL
                     KMRWTMDALTSADLLYDAGNAAPGSEIWKKLAAEVMANVLGQHYFTEVWRNGAKVKFK
                     NRPTEYGMTRDAHQAVLTFTLPLAEPQPLSGQTYTFSTFDPSYYVDMHYDQDSDITMP
                     EPLREKCRIQVYTPAPGEETLRFAQSLDKEDAPPEDMDLGKQFAQTVTLQCQ"
     gene            4622..5899
                     /gene="csiE"
                     /locus_tag="OQP62_002883"
     CDS             4622..5899
                     /gene="csiE"
                     /locus_tag="OQP62_002883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stationary phase inducible protein CsiE"
                     /protein_id="HCS1722384.1"
                     /translation="MMPTIAPPSVLSAPQRRCQVLLTLFQPEPIATVEIFSALNGVDD
                     DTAREDITDTSLEIQRYHRLAITTCQNGCYRIEGTALDQRLCLLHWLRRGLRLCPTFV
                     TQQFTPALKNALKQRGIARPLYDDINLHALINLCARRLQKPFEHRDVQFLRLFLQYCL
                     LQHHAGITPEFNPVQQIWAQSCAEYPLAQEIGRHWQRHVMQAAPLNEALFMALLFSMI
                     RLPDPIRDTHQRAQQLRLEVARLVLRFREKGNVRFSDEQGLNDQLYVHLAQALNRSLF
                     TIGIDNTLPEEFNRLYPRLVRTTREALAGFEAEYGIHFSEEETGLVAVIFGAWLMQDN
                     DLHERQIVLLADKNDALETHIEQQLRELTLLPLNIRRISLQAFQKEGCPRGVALIVTP
                     YATPLPLFSPPLIHADRALTEHQQQQIRKILES"
     gene            complement(5894..7033)
                     /locus_tag="OQP62_002884"
     CDS             complement(5894..7033)
                     /locus_tag="OQP62_002884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate MFS transporter"
                     /protein_id="HCS1722385.1"
                     /translation="MALHSTRWLALSYFTYFFSYGIFLPFWSVWLKGLGLTPETIGLL
                     LGVGLVARFLGSLLIAPRVSDPSRLISALRVLALLTLVFALAFWAGTHVAWLMVVMVG
                     FNLFFSPLVPLTDALANTWQKQITLDYGRVRLWGSIAFVIGSALTGKLVSLYDYQAIL
                     ALLTLGVASMLLGMLLRPSVPPQGESRQQESAGWPAWRTLVAQSWRFLACVCLLQGAH
                     AAYYGFSAIYWQGAGYSASAVGYLWSLGVVAEVIIFALSKKLFRRFSARDLLLLSAVC
                     GVVRWGLMGWSTALPWLIVIQILHCGTFTVCHLAAMRYIAARQGSEVIRLQAVYSAVA
                     MGGSIAIMTVFAGFLYQHLGGGVFWIMALVALPAIFLRPKVVAAS"
     gene            complement(7218..8471)
                     /locus_tag="OQP62_002885"
     CDS             complement(7218..8471)
                     /locus_tag="OQP62_002885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HCS1722386.1"
                     /translation="MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVM
                     QAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQAN
                     FAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAK
                     LAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP
                     HAHVVTTTTHKTLAGPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVAL
                     KEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEAD
                     AALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN
                     INDEATIERVKAKVLDICARFPVYA"
     gene            8796..9986
                     /gene="hmpA"
                     /locus_tag="OQP62_002886"
     CDS             8796..9986
                     /gene="hmpA"
                     /locus_tag="OQP62_002886"
                     /EC_number="1.14.12.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NO-inducible flavohemoprotein"
                     /protein_id="HCS1722387.1"
                     /translation="MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFN
                     MSNQRNGDQREALFNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGTHL
                     LATLDEMFNPGQEVLDAWGKAYGVLANVFIHREAEIYHENASKDGGWEGTRPFRIVAK
                     TPRSALITSFEFEPVDGGTVAEYRPGQYLGVWLKPEGFAHQEIRQYSLTRKPDGKGYR
                     IAVKREDGGQVSNWLHHHANVGDVVHLAAPAGDFFMNVAADTPVSLISAGVGQTPMLA
                     MLDTLAKEQHTAQVNWFHAAENGDVHAFADEVSELGRTLPRFTAHTWYREPTEADRAQ
                     RVFDSEGLMDLSKLEAAISDPAMQFYLCGPVGFMQFAAKQLVSLGVNNENIHYECFGP
                     HKVL"
     gene            10167..>11699
                     /gene="cadC"
                     /locus_tag="OQP62_002887"
     CDS             10167..>11699
                     /gene="cadC"
                     /locus_tag="OQP62_002887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine decarboxylation/transport transcriptional
                     activator CadC"
                     /protein_id="HCS1722388.1"
                     /translation="MQQPVVRIGEWLVTPSVNQISRQGRQITLEPRLIDLLMYFAHHP
                     DEVLSRDNIIDHVWMRTIVTNHVVTQSISELRKSLRDGGDSNAEYIVTVPKRGYKLTA
                     PVIWCEENSDEIDNLSTSPPPPIAATNAEPTEGVPAAAPVPPASLQTPTKKAKKPRIA
                     AFWTWVMFLLSLATLVVFIVMSVVDHNAAVTKTRLLLNPRDIDVRFEGGNSCNNWVSQ
                     ESYAIGLGGLITDLLNTYSTFMVHDKTNYRVNEPSNSGKTLTIQFVNQRHYRAQQCFM
                     SVVLIDNADGSTMLDKRYFVTNTNQLSIQDDLFNSLSFVLTQPWPNRMREQLALFRTP
                     QNTALMRFYEARQLILSGDAQALSKAGDILNGIIKETPDFNYAYEYKVLVDVLRQSQQ
                     PFDKEQVAALNEEFKKIDQIPGVEKTSVYYKIKTVDLLGKGDIDAAYEEINKSIELEM
                     SWFNYVLLGKVYEMKGENRLAADAYLTAFNLRPGENTLYWIENGVFQTSVQKIVPYLN
                     SFL"
BASE COUNT         2811 a         3273 c         3040 g         2575 t
ORIGIN      
        1 aaaattacgc ctgacgagtt tagtctgctt atccagcgat taaacaaaaa atggcgcgtg
       61 tttgccccgt ccgcagagtt tcgcggcggg cgtttttccg acactgacaa cattatttat
      121 caacggatta gcggctggcg cgatctcatc tggcacgaga aatcgcacat gtcgccgaat
      181 accattatcg cccctatcac cgaaacgctc ttttatttcg ataaaaacac cattcaaatt
      241 gccgagacag acacctcccc gataatcatc tttgcccgcg cctgcgacat taacgccatg
      301 tcgcggctgg attatatgta tttatcaaat gggaataatt ccgattacag ttatcaactg
      361 ctacgggagc atattcgttt cgtccttatt gagtgtgaag aaagcttcga aaattgtttc
      421 tgcgtctcaa tgggtactaa taaaactgac tgttatagcg ccgccatgcg ttttagcgat
      481 gagggcgcgc ttgtgagcat ccgcgatccc tttatcgagg cggcgataca aggactgggg
      541 caggaggctg actatacccc ctctttcgtc agcgaaaacc gggaaaccgt cgtcacgccg
      601 gacagcgttt gccgcgatcc gcaaaaaatt cgcgacattc tcactcgcca tccgctatgg
      661 gacgcctacg acagccgctg catcagttgt ggccgctgta ctaccgggtg cccaacctgt
      721 acctgctata gcgtctttga cgtcgcctat gatgaaaatc cgcagcgcgg cgaacgccgt
      781 cgccagtggg caagctgcat ggtgccgggc tttagcgaca tggccggcgg tcatggtttt
      841 cgcgaaaaac ccggcgagcg tctgcgctac cgcgccctgc ataaggtcaa tgactacaaa
      901 gcgcgcaacg gcattgaaca tatgtgcgtc ggctgcggcc gctgcgacga tcgctgcccg
      961 caatacatca aattttcttt gattattaac aaaatgaccg ctgccgttcg gcaggcgctg
     1021 gcagaggagg cataacgcat gtcacattgt tcctgtcatg ataaaccgca gcacagtttg
     1081 ctgcctgcgg cgtaccgcat cctcagtatt actcgccaca cgccgctgga gtggaatttc
     1141 cgcgtggccg tcgattttcc cgcgcactgg gggcaatttg ttgaggtgtc gctgccgcgc
     1201 gtcggcgaag cgcccatctc cgtttccgac tacggcgatg gctggataga tctgctgatt
     1261 cgtaatgtcg gaaaagtgac cagcgccctc tttacgctga aagaaggcga caacgtgtgg
     1321 ctacgcggct gctatggcaa tggctatccg gtcgatactc tgcgccataa acccttactg
     1381 gttgtcgcag gcggcacggg cgtcgcgccg gtgaaaggct taatgcgcta tttcgttgag
     1441 aatccccagg aaattggtca actggatatg attctcggct ataaaaatcg cgattgcgtg
     1501 ctgtacaaag aagaaatggc gacgtggcac ggcaaacata atctggtgct cacgctggat
     1561 gaaggcgagg ctgatgaccg ttaccagatt ggtcgggtga ccgatcggct tgccgacatg
     1621 acgcttagcg atatcgacac catgcaggcc atcgtcgttg ggccgccaat aatgattacc
     1681 tttaccgtaa aaatgctgct gcaaaaaggg ctcaagccgg agcaaatttg ggtggactac
     1741 gaacgccgga tggcctgctc cgtcgggaag tgcggccact gccgtatggg cgaagtgtat
     1801 gtctgcaccg acggcccgat atttaactac gccgtcgcgc aacgttttgc cgattaagga
     1861 gaacatcatg agcattgata ttgatatcat taaagcccgt gcgaaaaacg aatatcgcct
     1921 atcaaaagtg cgcggcgaag ccatgatcag cgtccgcatt cccggcggta ttttgcccgc
     1981 gcatttgcta acggtggcgc gtgacatcgc cgaaacctgg ggcaacggac aaattcacct
     2041 cactacccgc cagaagctgg cgatgccggg tatccgttac gaagatatcg acaacgtgaa
     2101 cgctgcgctg gagccatttc ttcgcgagat tgaaatagaa ctgtgcgacg tccaggttga
     2161 ggataccaaa gcgggctatc tcgctattgg cgggcgaaat attgtcgcct gtcaggggaa
     2221 ccgcatttgc cagaaagcca acactgacac gaccggtctg tcccgtcgtc ttgaaaaact
     2281 ggtctatccc agcccttatc atctcaaaac ggtcattgtt ggctgcccga atgattgcgc
     2341 gaaggcgtca atggccgatc tgggaattat tggcgtggcg aaaatgcgct tcactgccga
     2401 tcgctgtatc ggttgcggcg cctgcgtgaa ggcctgtagt caccacgcgg taggctgcct
     2461 ggcgctgaag aacggcaaag cggtcaaaga agagtccgcc tgtatcggct gcggcgagtg
     2521 cgtgctggcc tgtccgacgc tggcctggca acgtaagccg gatcagctct ggcaagtccg
     2581 tctgggcgga cgcaccagta aaaagacgcc gcgcgtcggc aagctcttcc tcaactgggt
     2641 gactgaagat gtgataaagc aggtgatcgt taacctgtat gaatttgaaa aagagatgct
     2701 cggcggaaaa ccgatctatc tacatatggg ccatctgatc gacaaaggcg gctatctgcg
     2761 ttttaaagaa cgggtactgc gcggcgttca gctcaatccg gaagcgatgg tcgccgaacg
     2821 catttactgg gccgaagacg aatccgtcgc gcggatgcat ctcaaacccg ccgggcacta
     2881 gtcaaccacg ccatggccgc agcccgccca caggctgcgg cacgctaaac cacatgacca
     2941 gcgccgcgac aagcagtatg acccctccgg ccagcgccag cgttgaccag cctacctgcc
     3001 gccataacgc cggcgctttg tttccactga gcttcaccgc cagagcacga aaagtgtgta
     3061 ccagcagcgc cagcgaagta atcgttagcg aggttcccgc cgccattgcc agtaccgacg
     3121 ccattcccca gctaaaaacg ccaatcactt tactgaataa cagcaccatt atcgctccgg
     3181 aacagggccg catccccata gacagtacga tcatgagtcg cgcgcgccag tcatcgccgc
     3241 tatgcaattg ttcctgcgtc ggtagatgct gatgtccgca gccgcatttt tcatggtgaa
     3301 catggcgcgg cgtaaaagcg ataaagacag gtttacgtag cagcgcgcgt aaccttttta
     3361 tggcccgcca gcacagcaag atgcccagcc cgccaactaa cgcatagctc cccttttcca
     3421 gccagaaacc gctcagatgg agctgcctgg ccggaagttg caatacggtc agcacgccca
     3481 ccaccaaccc gatagccacg accccctgca ataacgcggc ggcgagggtt aacacgatac
     3541 ttgatttcag cttcgaagga tgcgtcgcca gccatgtcgc gatcaccact ttgccgtgtc
     3601 ccggccccac gcatgaagca cgccatacat aaaactcagc agaagcaacg atccgcccgc
     3661 ccgctcagga tgcgtcgcca ccgcattaag cagcgcgctc aactgctgat tcacgtcccg
     3721 ctgccaaaga gcgcttttca gcatcacctg cggccaggcc tgccatatcc acagaccgcc
     3781 aaccagcatc agcagcagga ataacgccaa tggccacagc gagagccagc gtcgccccgg
     3841 agtgcgttga gaaaaaatta ctgacattgc aaggtcaccg tttgggcaaa ctgtttacct
     3901 aaatccatat cctccggcgg cgcgtcctct ttatccagcg actgggcgaa acgtagcgtc
     3961 tcttcgccgg gcgcaggagt ataaacctga atccgacact tttcgcgcag cggttccggc
     4021 atcgtgatat cgctgtcctg gtcataatgc atatcgacat aataagaggg atcaaacgtt
     4081 gaaaaggtat aagtctggcc gcttaacggc tgcggttcag ccagcggcag cgtaaaggtc
     4141 aataccgcct gatgcgcgtc acgcgtcata ccgtattctg tcggcctgtt tttaaacttc
     4201 actttcgcgc cattgcgcca cacttctgta aagtagtgct gcccaagtac gttagccatc
     4261 acttccgccg ccaacttttt ccatatttct gaacccggcg ccgcgtttcc ggcgtcatac
     4321 agcagatcgg cggacgtcag cgcgtccatt gtccagcgca tttttaacgc cacaaattgc
     4381 tcattttcac tgaccacctg cgtttgcaga cggatgaagc tgtgcggatg cgccgccgcc
     4441 acgaaagata aaacggcgag aaatagtatt aaggcgctgc gtttcactgg cttcatctgt
     4501 tcctcgcgat aaaaattctg tgacactcct cagcattcct ggcctaaaag cacacttatc
     4561 acatttttca catgcaaact ttagctatcc ttaccagata aactaacggg agacctgaca
     4621 gatgatgccg acaattgccc caccatctgt actttccgct ccccagcgcc gctgtcaggt
     4681 attgctgacg cttttccagc cggagccaat tgccacggtg gaaatcttca gcgcgcttaa
     4741 tggcgttgat gatgatactg cccgtgagga tatcactgac acaagcctgg agatccagcg
     4801 ctatcatcgc cttgccatca caacatgcca gaacggttgc tatcggatcg aaggtacagc
     4861 actcgatcag cgcctttgcc ttttacactg gctcaggcgc ggcctgcgtt tatgcccgac
     4921 cttcgtcacg caacagttta ccccggcctt aaaaaacgcg ctaaagcagc gcggtatcgc
     4981 gcgtccgctg tatgacgata ttaatctgca cgcgctcatc aatctgtgcg cccgccggtt
     5041 gcaaaaacca tttgaacatc gcgacgtgca gttcctgcgt ctctttttac agtattgtct
     5101 gctacaacac catgccggca tcaccccgga attcaatcct gtacagcaga tttgggcgca
     5161 gtcgtgtgcg gaatatccac tcgcccagga aattggtcgt cactggcagc gccacgtgat
     5221 gcaggccgca ccgctcaatg aagcgctgtt tatggcgtta ctgttttcaa tgattcgcct
     5281 ccccgacccg attcgcgaca cgcatcaacg ggcgcagcaa ctgcgactgg aggtggcgcg
     5341 gctggtgctg cgctttcgag aaaaagggaa cgtacgcttc agcgacgaac aagggcttaa
     5401 cgatcagctg tatgtccatc tcgcccaggc gctgaaccga agtttattca cgattggcat
     5461 cgataatacg cttccggaag agttcaaccg tctttatccg cgtctggttc gcaccacacg
     5521 tgaggcgctc gccgggtttg aagccgaata tggtatccac ttttccgagg aagagacggg
     5581 gctggtggca gtgattttcg gcgcctggct gatgcaggat aacgatttgc atgagagaca
     5641 gatcgtattg ttagcggata aaaatgatgc gctggagacg catattgagc agcaactgcg
     5701 tgaactgacc ctattgccgc tgaatatcag acggatatcg ctccaggcgt ttcaaaaaga
     5761 gggatgcccg cgcggcgtag cgctgattgt taccccttac gccacgccgc taccgctctt
     5821 ctcaccgcca ttaattcatg cggatcgcgc cctcacagag caccaacagc agcagatccg
     5881 caagatcctg gaatcatgac gcggcaacca ctttgggccg aaggaagata gcgggcaatg
     5941 ccaccagcgc cataatccag aatacgccgc cgcccagatg ttgatacaga aaaccggcaa
     6001 ataccgtcat aatcgcgata ctgccgccca tcgccacagc ggaatagacg gcctgcaaac
     6061 gaatcacctc gcttccctga cgcgcagcga tatagcgcat agcggccaga tggcaaacgg
     6121 taaacgtgcc acagtgcagg atttgtatca caatcagcca cggcaacgcc gtactccagc
     6181 ccatcagtcc ccagcgtacc acgccgcaca cagcagaaag caacagcaag tcgcgggcgc
     6241 taaaccggcg gaatagcttt ttactcaggg caaaaatgat cacttccgcc accacgccca
     6301 acgaccataa atagccgacc gccgatgctg aatagccagc cccctgccag tagatggcgc
     6361 taaaaccgta gtaggcggcg tgcgcccctt gcagcaaaca gacgcaggcg agaaaacgcc
     6421 aactttgtgc caccagcgta cgccaggcgg gccagcctgc gctctcctgc tgacggcttt
     6481 ccccttgcgg cggcacgctg ggacgtaaca acatacccag caacatcgag gcgacgccga
     6541 gcgtcagtag cgccagaatc gcctggtaat cgtataaact caccagctta ccggtcagcg
     6601 ccgaccctat cacgaaggcg atggaccccc acagccgcac ccgaccatag tccagggtaa
     6661 tttgcttttg ccaggtattg gccagcgcat cggtcagcgg caccagtggt gaaaagaaga
     6721 ggttaaaccc aaccatcacc accattagcc acgcgacatg cgttcctgcc caaaatgcca
     6781 gcgcaaatac cagcgtcagc aatgccagga cgcgcagcgc ggagatcaac cgcgaaggat
     6841 cgcttacgcg aggcgcaatg agcagactac cgagaaaacg cgcgaccaga cccacgccca
     6901 gcagaagacc gatggtttcc ggcgttagcc caagaccttt gagccagacg ctccagaagg
     6961 gcagaaaaat accgtaacta aagaagtagg tgaaataact gagcgccagc cagcgcgtgg
     7021 aatgcaatgc catgattccc tcccgtttgg aggcgatagt ctggcggtaa acggttgcgc
     7081 tggcaagggt aacaggcgga gggagaagtt caaacggcaa cgccgccgga taatgacttc
     7141 cggcggcgtc acgttatggc gcataagtaa tgcccgacag acgcagcgcc atcgggccat
     7201 ttacacaaca caaacgctta cgcgtaaacc gggaagcggg cgcagatatc cagcactttc
     7261 gctttcacgc gttcaatggt ggcttcatca ttgatgttgt ccagcacgtc acacatccag
     7321 ccagccagct ctttcacttc cgcttctttg aagccgcgac gagtaaccgc cggagaacca
     7381 atacggatac cggaggtcac gaacgggctc ttcggatcgt tcggcacgct gtttttgttc
     7441 acggtgatgt tagcacggcc cagcgcggcg tcagcttctt taccggtcag gtttttatcc
     7501 accaggtcca gcaggaacag gtggttctca gtgccgccag acaccacttt gtagccgcgg
     7561 ttcaggaaca cttccaccat cgctttggcg tttttcgcca cctgctgctg gtaaactttg
     7621 aactccggct ccatcgcttc tttcagcgct accgctttac ccgcgatcac gtgcatcagc
     7681 gggccgccct gcgcgcttgg gaagacggcg gagttcagtt ttttgtacag ctcttcgtcg
     7741 ccgcctttcg ccaggatcag gccgccgcgc ggacccgcca gggttttgtg ggtggtggtg
     7801 gtgacaacgt gagcgtgcgg aaccgggttc gggtaaacgc ctgcggcaat caggcccgcc
     7861 acgtgcgcca tgtcgacaaa caggtatgcg ccgatgctgt cagcgatttc acgcattttt
     7921 gcccagtcaa ccacaccgga gtaggcagag aagccaccga taatcatctt cggcttgtgc
     7981 tctttggcca gcttcgccat ctcgtcatag tcaattttac cggactcatc gataccgtaa
     8041 ggtacgatgt tgtacagttt accggagaag ttaaccgggg agccgtgagt caggtggccg
     8101 ccctgcgcca ggttcatacc cagaacggta tcgcccggct gcagcagcgc ggtgtaaaca
     8161 gcgaagttag cctgagaacc ggagtgcggc tgcacgttag cgtagtcggc gccgaacagt
     8221 tctttcgcgc ggtcgatagc cagctgctct acgacatcaa cgtattcgca accgccgtag
     8281 tagcgcttgc ccggatatcc ttcagcgtat ttgttggtca gctgagaccc ctgcgcctgc
     8341 atcacgcgcg ggctggtgta gttttcggag gcgatcagtt cgatgtgctc ttcctgacgt
     8401 actttttcct gctccatagc ctgccacaat tcggcatcat aatcggcaat gttcatttca
     8461 cgctttaaca tccgcatctc ctgactcagc taacaataaa atttgtgcct gaaaaggcag
     8521 tccgtgggac ttcggccaac agtataaccg aatcattctt cgataacagg tcttgacaaa
     8581 ggtttttacg caaacgatta cctatgcgtc agataagggt ttcctgaacg agagcctgac
     8641 gaatttcaac ggatttcttt tcagctttgt gatgcagatt tttcacgttg ttacctccat
     8701 aacgtaaagc agagaagatc catttacaat gcaagggtat ttttataaga tgcatttgat
     8761 atacattatt agattttcac ataaaggaag cacgtatgct tgacgcacaa accatcgcta
     8821 cagtaaaggc caccattccc ctgctggttg aaacaggacc gaaactgacc gcccacttct
     8881 acgaccgtat gtttacgcat aacccggagc tcaaagaaat cttcaatatg agcaaccagc
     8941 gtaacggtga tcagcgcgaa gccctgttta atgctatcgc ggcctacgcc agcaatatcg
     9001 aaaatttacc ggcgttgctg ccggcggtag aaaaaatcgc gcagaagcac accagcttcc
     9061 agattaagcc ggagcagtac aacatcgtcg ggacgcatct gctggcgacg ctggatgaaa
     9121 tgttcaaccc gggccaggaa gtgctggacg catggggtaa agcctatggc gtactggcta
     9181 acgtctttat tcatcgggaa gccgagattt atcacgagaa cgccagcaaa gacggcggct
     9241 gggaaggcac gcgccccttc cgcatcgttg cgaaaacccc gcgtagcgca ctgatcacca
     9301 gctttgagtt tgaaccggtc gacggcggta cggtggcgga ataccgtccc gggcagtatc
     9361 tgggcgtctg gctgaagccg gaaggttttg cgcatcagga gatccgccaa tattcactga
     9421 cccgtaaacc cgatggcaaa gggtaccgta ttgccgtgaa gcgtgaagac ggcggccagg
     9481 tatcaaactg gttacaccat cacgccaacg taggcgatgt ggtgcatctg gctgcgccgg
     9541 caggtgactt ctttatgaat gtcgccgctg atacccccgt ttcgctgatt tccgctggcg
     9601 tcggccagac gccgatgttg gcgatgctcg atacgctggc gaaagaacag cataccgcgc
     9661 aggtgaactg gttccacgcg gcggagaacg gcgacgtcca tgcgtttgcc gacgaagtga
     9721 gcgagctggg ccgtacactg ccgcgtttca ctgcccatac ctggtaccgc gagccaaccg
     9781 aggccgatcg cgcccaacgc gtctttgaca gcgaagggct gatggattta agcaaactgg
     9841 aagccgcgat cagcgatccg gcaatgcagt tctatctttg cggcccggta ggctttatgc
     9901 agtttgccgc aaaacaactg gtttcacttg gcgtgaataa cgaaaacatt cattacgaat
     9961 gcttcggccc gcataaagtg ctgtaattgc aagaaatccg ctgaaaaaac gggcgttatc
    10021 gttaaggcga acgcccgttt tcctccccgt tctcctgctt attgcgctgc tttttatgcc
    10081 tttcttttac aaaaaagggg aataaaaaag tctgtgcaaa tcgtgttatt attaacgttt
    10141 gacttagctc gttagggcat ctttttatgc agcaacctgt tgtacgcatt ggagagtggc
    10201 tggttacacc ttctgttaat cagatcagtc gtcagggacg ccagattact cttgaaccac
    10261 ggctgatcga tcttctgatg tattttgcgc atcatccgga tgaagtgtta agccgggata
    10321 acattattga tcatgtctgg atgcgcacca tcgtgaccaa ccatgttgtc acccaaagca
    10381 tttctgaact acgcaaatca ttaagagatg gcggagacag caatgctgaa tacatcgtta
    10441 ccgtacctaa acgcggctat aagctgacgg cgccggttat ctggtgcgaa gaaaatagcg
    10501 atgagatcga taatttatca acgtcgccgc cgccgccgat cgcagcgacg aatgcagaac
    10561 cgacagaggg ggttcctgcc gctgcgcctg tgccgcccgc ctctttgcaa acgccgacta
    10621 aaaaggcgaa aaagccgcgt atcgccgctt tctggacgtg ggtgatgttc ctgctctcgc
    10681 tggcgacgct ggtggtgttt atcgtgatgt cggtggtaga tcataatgcc gcggtaacaa
    10741 aaacgcggtt attacttaac ccacgagata tagatgttcg ttttgaaggc ggcaattcct
    10801 gtaataactg ggtctcgcag gagtcctacg ccatcggtct gggcggctta atcaccgacc
    10861 tgctgaacac ctactcgacc tttatggtgc acgataaaac caattaccgg gtcaatgagc
    10921 caagcaactc cggtaagacg ttaaccattc agtttgtcaa tcagcgccac tatcgggcgc
    10981 agcagtgctt tatgtctgtg gtgctcattg ataacgccga tggttcaacc atgctggata
    11041 agcgttattt cgtcaccaat actaaccagt tgtccatcca ggatgatctg tttaatagcc
    11101 tgtctttcgt tttaacacag ccctggccta atcgtatgcg agaacaactg gccctgttca
    11161 gaacgccgca aaataccgcg ctgatgcgtt tttatgaggc gcgccagctt attctgagcg
    11221 gcgatgcgca ggcgctaagt aaagccggcg atattctgaa tggcattatt aaggaaacgc
    11281 ctgatttcaa ctatgcctat gaatataaag tgctggtaga tgtattacgg caatcacaac
    11341 agccgtttga taaagaacaa gtggctgcgc tgaacgaaga gtttaaaaaa atagatcaaa
    11401 ttccgggcgt tgagaaaacg tctgtttatt ataaaatcaa gaccgttgat cttttgggca
    11461 aaggtgatat cgatgcagcg tatgaggaaa tcaataaaag catcgagctt gaaatgtcgt
    11521 ggtttaacta tgtcctgttg gggaaagttt acgaaatgaa aggtgagaat cgtctggccg
    11581 ctgatgccta tctgaccgcc tttaatttac gtccaggtga aaatacgctg tactggatcg
    11641 agaacggcgt atttcagaca tccgttcaga aaattgtccc ttatctgaat agttttctg
//
LOCUS       DAJVSD010000137        11663 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.137, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000137 DAJVSD010000000
VERSION     DAJVSD010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11663
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.137"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(6..2507)
                     /gene="copA"
                     /locus_tag="OQP62_002888"
     CDS             complement(6..2507)
                     /gene="copA"
                     /locus_tag="OQP62_002888"
                     /EC_number="7.2.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-exporting P-type ATPase CopA"
                     /protein_id="HCS1722389.1"
                     /translation="MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVELADVTVTEAHVT
                     GTASADALIETIKQAGYGATLSHPKAKPLTESSIPSEALAAVPHELPVATADEESQQL
                     LLSGMSCASCVTRVQHALQSVPGVTQARVNLAERTALVMGSASAADLVQAVEKAGYGA
                     EAIEDDIKRRERQQETAIATMKRFRWQAIVALAVGIPVMVWGMIGDNMMVTGDNRSLW
                     LAIGLITLAVMVFAGGHFYRNAWKSLLNGTATMDTLVALGTGVAWLYSMSVNLWPQWF
                     PMEARHLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTEDGEKS
                     VPLADVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPIPQQKGEGDSVHAGTV
                     VQDGSILFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVAIALFS
                     AAIWYFFGPAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDAD
                     ALQRASTLDTLVFDKTGTLTEGKPQVVAVKTFNGVDEAQALRLAAALEQGSSHPLAHA
                     ILEKAGDDKLPQVNGFRTLRGLGVSGEAEGHQLLLGNQALLNEQHVATDDMTAEITAQ
                     ASQGSTPVLLAIDGKAAALLAVRDPLRSDSIAALERLHNAGYRLVMLTGDNPTTANAI
                     AKEAGIDEVIAGVLPDGKADAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGS
                     DVAIETAAITLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSIGIPVAAGILWPF
                     TGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKA"
     gene            2617..3033
                     /gene="cueR"
                     /locus_tag="OQP62_002889"
     CDS             2617..3033
                     /gene="cueR"
                     /locus_tag="OQP62_002889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(I)-responsive transcriptional regulator"
                     /protein_id="HCS1722390.1"
                     /translation="MNISDVAKKTGLTSKAIRFYEEKGLVTPPLRSENGYRTYTQKHL
                     NELTLLRQARQVGFNLEECGELVNLFNDPRRHSADVKKRTLEKVAEIERHISELQSMR
                     DQLLAMAESCPGDDSADCPIIDNLSGCCHHKAQKLR"
     gene            complement(3034..3486)
                     /locus_tag="OQP62_002890"
     CDS             complement(3034..3486)
                     /locus_tag="OQP62_002890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HCS1722391.1"
                     /translation="MIAMILVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGL
                     TVWLLPLGWEWQGVLFAALTLLAAWLWWRWLARRVREQKPTDSRLNQRGQQLVGRRFM
                     LDAALVNGRGHMRVGDSSWPVCADEDLRAGTHVEVIAVEGITLRIRAV"
     gene            complement(3483..4401)
                     /locus_tag="OQP62_002891"
                     /pseudo
     CDS             complement(3483..4401)
                     /locus_tag="OQP62_002891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459496.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH/Band 7/PHB domain protein"
     gene            4548..5225
                     /gene="fetA"
                     /locus_tag="OQP62_002892"
     CDS             4548..5225
                     /gene="fetA"
                     /locus_tag="OQP62_002892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter ATP-binding protein FetA"
                     /protein_id="HCS1722392.1"
                     /translation="MTKRSMLLELKQVGYQTATTKIVNNISFTLQRGEFKLITGPSGC
                     GKSTLLKMVASLISPDIGVILFEGRDITTLSPEAYRQQVSYCAQTPALFGDTVYDNLI
                     FPWQIRHQRPQPTAFADDLARFELPETILQKPIAALSGGEKQRIALIRNLQFLPKILL
                     LDEITSALDEHNKRNVNDIIHRYVRDKQVAVLWVTHDKDEIQHADKVITLTPSAGEMQ
                     EARYERA"
     gene            5212..5991
                     /gene="fetB"
                     /locus_tag="OQP62_002893"
     CDS             5212..5991
                     /gene="fetB"
                     /locus_tag="OQP62_002893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron export ABC transporter permease subunit
                     FetB"
                     /protein_id="HCS1722393.1"
                     /translation="MNEHNITNTSLALSMLLVVVAMLISHKEKLALEKDILWSVCRAV
                     IQLIIVGYVLKYIFGVNHAALTLLMVLFICFNAAWNAQKRSKYIDKAFLSSFIAITVG
                     AGLTLTVLVLTGSIEFAPMQVIPIAGMVAGNAMVAVGLCYNQLGLRFHSEQQQIQEKL
                     SLGATPKMASAGLIRDSIRASLIPTIDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQ
                     IMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVMPLKKS"
     gene            complement(6077..6931)
                     /gene="cnoX"
                     /locus_tag="OQP62_002894"
     CDS             complement(6077..6931)
                     /gene="cnoX"
                     /locus_tag="OQP62_002894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperedoxin"
                     /protein_id="HCS1722394.1"
                     /translation="MSVQNIVNINESNLQQTLEQSMTTPVLFYFWSERSQHCLQLTPV
                     LESLAAQYHGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAI
                     RALLDKVLPREEELKAQQAMQLMQEGNYVDALPLLKDAWQLSSQNSEIGLLLAEAQIA
                     LNRSEEAEAVLKTIPLQDQDTRYQGLVAQIELLKQAADTPEIQQLQQQVADNPQDAAL
                     ATQLALQLHQVGRNEEALELLFSHLRKDLAAAEGQTRKTFQEILAALGTGDALASKYR
                     RQLYALLY"
     gene            complement(6991..7761)
                     /locus_tag="OQP62_002895"
     CDS             complement(6991..7761)
                     /locus_tag="OQP62_002895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1722395.1"
                     /translation="MQKSVLITGCSSGIGLDSALELKRQGFQILAGCRKPDDVARMNS
                     MGFTGVLIDLDSPESVDRAADEVIALTDNRLYGIFNNAGYGVYGPLSTISREQMEQQF
                     SSNFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDAL
                     RMELRHTGIKVSLIEPGPIRTRFTDNVNQTQRDKPVENPGIAARFTRDPDAVVAKVRH
                     AFASDKPRLRYPVTLVTWAVMALKRILPGRMLDKILQS"
     gene            complement(7916..8530)
                     /gene="tesA"
                     /locus_tag="OQP62_002896"
     CDS             complement(7916..8530)
                     /gene="tesA"
                     /locus_tag="OQP62_002896"
                     /EC_number="3.1.1.5"
                     /EC_number="3.1.2.14"
                     /EC_number="3.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional acyl-CoA thioesterase I/protease
                     I/lysophospholipase L1"
                     /protein_id="HCS1722396.1"
                     /translation="MNFNTVFRWHLPFLFLILLTFRAAAADTLLILGDSLSAGYRMTA
                     SAAWPSLLNDKWQNKTSVVNASISGDTSQQGLARLPALLQQHHPRWVVVELGGNDGLR
                     GFAPAQTEQTLRKIIQTVKAADAQPLLMQIHLPANYGRRYNESFSAIYPKLAKEFDIP
                     LLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAKQLTPFLS"
     gene            8501..9187
                     /locus_tag="OQP62_002897"
     CDS             8501..9187
                     /locus_tag="OQP62_002897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1722397.1"
                     /translation="MPAENSVEVHRLRKSVGQGEHELSILTGVELVVKRGETIALIGE
                     SGSGKSTLLAILAGLDDGSSGEVSLVGKPLHQMDEEARAQLRAQHVGFVFQSFMLIPT
                     LNALENVELPALLRGENSGQSKAGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA
                     FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDPALAARCDRRLR
                     LVNGQLQEEA"
     gene            9184..11598
                     /locus_tag="OQP62_002898"
     CDS             9184..11598
                     /locus_tag="OQP62_002898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1722398.1"
                     /translation="MIARWFWREWRSPSLIIVWLALSLAVACVLALGSISDRMEKGLS
                     QQSREFMAGDRTLQSSREVPKAWLEEARKRGLNVGEQLTFATMTFAGDTPQLASVKAV
                     DSVYPMYGELQTRPGGVKPQPGSVLLAPRLMALLNLKTGDTIDVGDVTLRIAGEVVQE
                     PDSGFNPFQMAPRLMMNMADVAKTGAIQPGSRVMWRYKFGGTPQQLAGYESWLLPQLK
                     PEHRWYGLEQDDGALGKSLERSQQFLLLSALLTLLLAVAAVAVAMSHYCRSRYDLVAI
                     LKTLGAGRAQLRKLIIGQWLMVLGLSAVTGGAIGLLFENILLVLLKPVLPADLPPASL
                     WPWLWALGAMTVISLLVGLRPYRLLLASQPLRVLRRDVVARVWSLKIYLPVACAVVVA
                     LLAGLMGESMLLWAVLAGAVILALLCGLVGWMLLNVLRGMTLTSLPLRLAVSRLLRQP
                     WSTLSQLSAFSLSFMLLALLLVLRGDLLDRWQQQLPPESPNYFLINIASEQVAPLKAF
                     LAEHQVIPQTFYPIVRARLTEINGNPTEGQQDESLNRELNLTWQDTRPAHNPLVAGHW
                     PPKPGEVSMEEGLAKRLNVKLGDSVTFMGDTQAFSAKVTSLRQVDWESLRPNFFFIFP
                     SGALDGQPQSWLTSFRWENGNGMLTQLNREFPTVSLLDIGAILKQVGQVLEQVSRALE
                     VMVVLVTLCGMLLLLAQVQVGMRQRHQELVVWRTLGAGKKLLRTTLWCEFAMLGLVAG
                     LVAAIGAETALAILQINVFDFPWEPDWRLWVALPFCGALLLSVCGGWLGVRLLKGKAL
                     FRQFSG"
BASE COUNT         2478 a         3148 c         3330 g         2707 t
ORIGIN      
        1 actttttacg ctttcggttt aaagcgcaat agccggttgg cattgctgac gacggtaatg
       61 gaagacagcg ccattgccgc gcccgctact accgggttta acaaggtacc ggtaaacggc
      121 cacagaatac cggcggccac cgggatacca atgctgttgt agataaatgc gccaagcagg
      181 ttttgtttca tattgcgcaa cgtcgcgcgc gaaatggcca gcgcatccgc cacgcccatc
      241 agactatggc gcatcagcgt aatcgccgcg gtttcaatcg ccacatcgct gccaccgccc
      301 atcgcgatac cgacgtccgc ctgcgccagc gcgggcgcat cgttgatacc atcgccgacc
      361 atcgcaacct gacgaccctg gctttgcagg cgtttaatcg catcggcttt gccatccggc
      421 agaacgcccg caatcacttc atcaataccc gcttctttgg caatcgcgtt agccgtcgtt
      481 gggttatccc cggtgagcat taccagacgg tatccggcat tgtgcaggcg ttcaagtgcg
      541 gcaatactat cgctgcgcaa tggatcgcgt accgccagta acgccgccgc tttaccgtca
      601 atcgccagca ggactggagt cgagccttgc gaggcctgcg cggtgatttc cgccgtcata
      661 tcatccgtgg cgacgtgctg ttcgttcagt aacgcctggt tccccagaag cagttgatga
      721 ccttccgctt caccgctgac gcccagtccg cgcagcgttc tgaaaccgtt cacctgcggc
      781 agtttatcat cgccggcttt ttccagaatc gcatgggcca gcgggtggct ggagccttgt
      841 tcgagcgcgg ctgccagacg taatgcctga gcttcatcaa cgccgttaaa ggtttttacc
      901 gccaccactt gcggcttgcc ttccgtcagc gtcccggttt tatcaaaaac gagggtatcc
      961 aacgtactgg cgcgttgcag ggcatcggcg tcgcgtacca gcacgccgaa ttcggccgcg
     1021 cggcctacgc cggaaataat cgacattggc gtcgccaggc ctaatgcgca agggcaggcg
     1081 ataatcagta cggtggtggc gatgaccagc gtataaacaa tttgcggtgc cggcccgaag
     1141 aaataccaga tagcggcgct gaacagcgca atggccacca ctacgggaac gaataccgcg
     1201 gagattttat cggccagttg gccaatttcc ggtttactgc tctgcgcctg gcgtaccatg
     1261 cgaataatgc gtgacagcgt ggtatgactg cccaccgcgc tggcgcggaa caggatgctg
     1321 ccgtcctgga cgacggtgcc ggcatgaacg ctgtcgcctt cgcctttttg ctgcggaata
     1381 ggttcgccgg tcagcatggc ttcatcaagc cacgcttcgc cctgggtaat ttcgccatcc
     1441 accggcacgc gatcgccggt agtgagccgc agcagcatcc ctggctgaac gtccgccagc
     1501 gggacgcttt tttcgccgtc ttctgttacg acgcgtgcgg tgggcggggt gagatcgagt
     1561 aatttttcca gcgcttttga ggaacgctga cgggcgcgcg cttccagcat gtgtccgaga
     1621 ttaatcagac cgataatcat cgcgctggct tcgtaataga ggtgccgtgc ttccatcggg
     1681 aaccactgcg gccacaggtt gacgctcatg gagtagagcc aggcgacccc ggtgccgagc
     1741 gccaccagcg tatccatcgt cgccgtgccg ttcagcaggc ttttccacgc gttacggtaa
     1801 aagtgaccgc ccgcaaaaac catcaccgca agcgtgatca ggccaatagc cagccacagg
     1861 ctgcggttgt cgccggtcac catcatgtta tcgccgatca tcccccagac catgaccggt
     1921 ataccgaccg ccagggcgac gatggcctgc cagcgaaaac gtttcatggt ggcgatggcg
     1981 gtttcctgct ggcgctcgcg gcgtttgatg tcatcttcaa tcgcctctgc gccgtagccg
     2041 gctttttcca ccgcctgcac taaatcagcg gcggacgcgc tgcccatcac cagcgcagtg
     2101 cgttccgcca ggtttacccg tgcctgcgtg acgcccggta cgctttgtag cgcatgttgt
     2161 acgcgggtga cacaactggc gcagctcatg ccgcttaaca gcaactgttg gctttcttca
     2221 tcggccgtcg ctaccggaag ctcatgagga accgctgcca gtgcttccga cgggattgat
     2281 gactccgtca gcggtttagc ctttgggtgg cttaacgtcg cgccataccc ggcttgtttg
     2341 atggtttcaa ttaacgcgtc cgcactggcg gtaccggtaa cgtgcgcttc ggttacggta
     2401 acgtccgcca gctcaacatc cggacgttgt tcaagacttt ctttcacgcg tttaacgcaa
     2461 tgaccgcagg acaaaccgtc cagggtcagg tcgatagttt gagacatagt aaaaactcct
     2521 ttatgattgg tcatcaattc attgacatta gtaatcgtag tgactcactg tgataaaggt
     2581 taaaccttcc agcaaggtta aggtcaaggg ggaaatatga atattagcga tgtggcgaaa
     2641 aaaaccggtt taaccagcaa agccattcgg ttttatgaag agaaagggct ggtgacgccg
     2701 ccattacgta gcgaaaatgg ttatcgcacc tacacgcaga agcatttaaa cgagctgacg
     2761 ttgctgcgac aggcgaggca ggtggggttt aatctggaag agtgtggcga actggtcaat
     2821 ctgtttaacg atccgcgacg ccatagcgca gatgtgaaaa agcggacgct ggaaaaggtc
     2881 gcggagatcg aacgccatat cagcgagctg caatcaatgc gcgatcaact gttggcgatg
     2941 gcggagagtt gtcccggcga tgacagcgcc gactgcccga ttattgataa tctttccggc
     3001 tgctgtcatc acaaggcgca aaagttacgt tgattaaacg gcgcgaatgc gtagggtgat
     3061 gccttccacg gcgatcactt cgacatgcgt acctgcgcgc aggtcttcgt cagcgcatac
     3121 cggccacgag ctgtcaccga cacgcatatg accccgtccg ttcactaacg cggcatcaag
     3181 cataaaccgg cggcctacca gttgttgtcc gcgttggtta aggcggctgt cggtcggctt
     3241 ttgttcccgc acgcgacgcg ccagccagcg ccaccaaagc caggccgcca gcaacgttaa
     3301 ggccgcaaac agcacgccct gccattccca gccgagcggt aagagccaga cggttaagcc
     3361 ggtaatcact gccgccacgc cgctccacag caaatagccg ttaccgccga gcatttccgc
     3421 agccaacaac aggccgccga ggctaagcca gaagatatgt ggatgtacca gaatcatcgc
     3481 tatcatgctt ttttccgttc gctggcgctg tccttaacca gctcgctgat cccggcgata
     3541 gcgcccatca gactgctggc atccagcggc atcatgacca ctttgctgtt attcgccgag
     3601 ccgatttgct gtaacgcttc ggtgtatttc tgcgccacga agtagtttaa cgcctgaata
     3661 tccccggcgg cgatggcttc agacaccatc tgcgtagcgc gggcttccgc ttcggcggaa
     3721 cgttcgcgcg cttccgcctg caggaaagcg gactgacgtt cgccttcggc tttcagaatc
     3781 tgcgactgtt tttccccctc ggctttcagg atttccgcct gacgcacccc ttcggcctca
     3841 aggatatagg cgcgtttggt acgttccgct ttcatctggg cgttcatcga ggagatcaat
     3901 tccgcgggcg gacggacatc gcgaatttcg atacgggtaa ctttaattcc ccacggattg
     3961 gtggcttcat cgacaatatg cagcagccgc gcgttgatgc tgtcgcgctg ggagagcatt
     4021 tcatccagct ccatcgaacc gagcaccgta cggatattgg tcatggtcag gttaatgatc
     4081 gccagttcca ggttactgac ttcaataagc ggcgcgcggc gcatcgataa cctgaataaa
     4141 acagaccgca tcgatagtga cgttggcgtt atcttttgag atcacctcct gcgacggaat
     4201 atccagcacc tgctccatca tattgatctt gcggccaatt ctgtccataa acggtacaac
     4261 aaggcttaat cccggctgca gagttttggt gtaacgtcca aagcgctcca ccgtccactg
     4321 gtatccctgc ggaacgattt tgacgcccgc gccgacgatc accagcgcga cgaaaatgag
     4381 aatagggata agaatgagca tagctaaacc tcctgttgcg ttgtccataa accgattttg
     4441 ctgacgaatt aagcgaatta tacctgattc agtaaagcat gttcccccct tattaattac
     4501 agggatacac tatcgctata aaaatatgaa caacggatgc gcaataaatg acaaaacgta
     4561 gcatgttgct tgagttaaag caggtcggtt accagactgc gacgacaaaa atagtgaata
     4621 acatcagttt tacgctgcaa cgcggcgaat ttaagttaat taccggtcct tctggctgcg
     4681 gaaaaagtac gttgttgaaa atggtggcct cgctaataag ccctgatatc ggcgtgattc
     4741 tttttgaggg gcgggatatt actactctga gtccggaagc ctatcgccag caggtttctt
     4801 attgcgctca gacgccagcg ctattcggcg atacggttta cgataacctg atttttccct
     4861 ggcaaattcg ccatcagcgc ccgcagccga cagccttcgc agacgatctg gcgcgttttg
     4921 aactgccgga gacgattctg caaaaaccga ttgccgcgct ttccggcggg gaaaaacagc
     4981 gtattgctct aattcgtaat ctacagtttc tgccgaaaat actgttactc gacgaaataa
     5041 ccagcgcgct ggatgaacat aacaaacgga atgtgaatga tattattcat cgctatgttc
     5101 gcgataagca ggtcgctgtc ttgtgggtaa cgcatgataa agatgaaatt caacacgcgg
     5161 ataaggtgat aacgttaacg ccatctgccg gagagatgca ggaggcgcgt tatgaacgag
     5221 cataatatta ccaatacctc gctggcgtta tcgatgctgc tggtggtggt cgcgatgctc
     5281 atcagtcaca aggaaaagct ggcgctggaa aaagatattc tgtggagcgt atgccgggcg
     5341 gtgatacagc tcattattgt cggctatgta ctgaaataca tctttggcgt taatcatgcc
     5401 gccctgacgc tactgatggt gctgttcatc tgttttaacg ccgcatggaa cgcgcaaaag
     5461 cgcagtaaat atatcgataa ggcatttctc tcctcgttta tcgccatcac cgtcggcgcc
     5521 ggactaacgc tgacggtact ggtgcttacc ggttcgattg aatttgcgcc gatgcaggtg
     5581 attcccatcg ctggcatggt cgccggcaat gcgatggtgg cggtagggct gtgctacaac
     5641 caactggggc tgcgttttca tagcgagcag cagcaaatcc aggaaaaatt aagtttgggc
     5701 gcaacgccga aaatggcctc cgccgggctt atccgcgata gcatccgcgc atcgcttatc
     5761 ccgacgatcg actcggcaaa gaccgttggg ctggtgagcc tgccggggat gatgtccggg
     5821 ctgatttttg ccgggatcga tccggtaaaa gcgattaaat atcaaattat ggtaacgttt
     5881 atgctgttat cgacagccag cctgtctacc atcattgcct gctatttaac ctaccggaag
     5941 ttctataatt cgcgtcatca gttggtagtg atgccgctca agaaatcatg atagttgccg
     6001 gatgatggcg caagcgcctt atccggcctg aggacgacag gtaggccaga taagcgcgcc
     6061 atcaggcaag agaggattaa tacagtagcg cgtacaactg gcggcggtat ttcgacgcca
     6121 gcgcgtcgcc ggtgccgagc gcggcaagga tctcctggaa ggttttgcgc gtctgtccct
     6181 cggcggcggc aagatctttt ctcagatggc tgaacagcaa ttccagcgct tcttcattac
     6241 gtccgacctg gtgcaactgc aacgccagtt gcgttgccaa agccgcatcc tgcggattat
     6301 ccgcgacttg ctgctgaagt tgctgaattt ccggcgtatc cgccgcctgt ttaagcagtt
     6361 cgatctgcgc gaccagcccc tgataacggg tatcctgatc ctgtagcggg atagttttta
     6421 ataccgcttc ggcctcttca gagcggttca gcgcaatttg cgcttccgcc agtaacaggc
     6481 caatctcact gttctgcgaa gagagctgcc aggcgtcttt gagtaacggc agtgcgtcaa
     6541 cgtagttgcc ctcctgcatt aactgcatcg cttgttgcgc ttttagctct tcttcacgcg
     6601 gcagtacttt atccagcaga gcgcggattg cctcttccgg ctgcggcccc tggaaaccat
     6661 cgaccggttg gccattctgg aacagataga ctgtcgggat ggcgcgtaga ccaaactgag
     6721 cggcgatcat ctgttcggcg tcgcagtcca gctttgccag aataaactga ccgtggtact
     6781 gggcagccag actttccagc actggcgtta attgcagaca gtgttggctg cgttcagacc
     6841 agaaatagaa cagtaccggc gtggtcatgg actgctctaa ggtctgctgc aggttggatt
     6901 cattaatatt gacaatgttc tgtacggaca tggcgtcgct ctcttttgtc tgtgtcacgt
     6961 ttacatgggg gctgacgggc gcgcttcaac tcagctttgt aaaattttat ccagcatccg
     7021 gcccggcaat atgcgtttca gcgccatcac cgcccaggtg accagcgtaa cgggatagcg
     7081 cagcctgggt ttatcgcttg caaaagcatg acgcactttc gctactaccg cgtcaggatc
     7141 gcgggtgaaa cgcgcggcga tgccgggatt ttctaccggt ttatcacgct gcgtctggtt
     7201 aacgttatcg gtaaaacggg tacgaatcgg ccccggttct atcaggctca ctttaatgcc
     7261 tgtgtgccgt agctccatac gtagcgcgtc agaccaggct tcgagcgcat atttgctggc
     7321 ggcgtaagcg ccgcgccctg gggtggaaat cagccccatc accgatgagg tcatcacaat
     7381 gcgtccttcg ccatgcggca acatggcggg aagtaagcgc atggtaagct gatgcgcgcc
     7441 gaagaaatta ctggaaaact gttgctccat ctgttcacgg ctgatggtgg aaagggggcc
     7501 atacacgccg tagccggcat tgttaaagat cccatacaga cgattatcgg tcagggcgat
     7561 cacttcatcg gcggcacgat ccacgctttc aggggagtcg agatcgatca acacgccggt
     7621 aaatcccata ctgttcatcc gggcgacatc atcaggtttg cggcagcccg ccaggatttg
     7681 aaagccctgg cgtttaagtt caagcgcgct gtccagaccg attccgctgg aacatcctgt
     7741 tattaagacc gatttttgca taactttacc tgtcaggatc tccgttgatt taagagtcgt
     7801 ggttaactat atccgtcata cttcaagttg cctgtgcgtt cgtttactcc agtcacatag
     7861 gtatctatgc tcctggaaat tctcttacgt gccgccttca tgcaactcga atgattcagg
     7921 agagaaaagg ggtcaactgc ttcgccatcc agtcggcaat aaacggctgc gcgtcgcggt
     7981 tgggatgaat accgtcatcc tgcatccact gtggtttcag atatacctct tccataaaaa
     8041 acggtaatag aggaatatcg aactctttgg cgagcttagg ataaatggcg ctaaaggatt
     8101 cattataacg gcgaccgtag ttagcgggca gatgaatttg catcagtaac ggttgggcat
     8161 cggcggcttt caccgtctga atgattttac gtagcgtctg ttcggtttgc gcaggcgcaa
     8221 aaccgcgtag gccatcgttg ccgccaagct ccaccactac ccagcgcggg tgatgctgtt
     8281 gcaacagcgc cggcaaacgc gccagtccct gctgcgaggt atccccgctt atactggcat
     8341 taacgaccga cgttttgttt tgccatttat cattaaggag cgacggccat gccgcgctgg
     8401 cggtcatacg gtaaccggcg ctgaggctat cgcccagaat taataaggtg tctgcggcgg
     8461 cggcacggaa agttaacagg atcaaaaaca ggaagggcaa atgccagcgg aaaacagtgt
     8521 tgaagttcat cgtctcagga agtccgtcgg tcagggtgag catgagcttt ccatccttac
     8581 cggagttgaa ctggttgtca aacgcggcga aaccattgcg ctgattggcg aatcaggatc
     8641 gggaaaatct acgctgctgg cgattctcgc cggactggat gacggcagta gcggagaggt
     8701 cagtctggtc gggaaaccgc ttcatcagat ggacgaagag gcgcgggcgc agcttcgcgc
     8761 tcagcatgtc ggttttgttt ttcaatcctt catgcttatt cctacgctta acgcgctgga
     8821 aaacgttgag ctaccggccc tgctacgcgg tgaaaacagc ggtcagagta aggcgggggc
     8881 gaaagcgctg ctcgaacaac tgggactggg aaaacggctt gaccaccttc cggcacagct
     8941 ttccggcggc gaacagcagc gcgtagcgct ggcgcgcgcg tttaacgggc gtcctgatgt
     9001 gctgtttgcc gatgagccga cgggcaacct tgaccgtcag accggagata aaatcgccga
     9061 cctgctattt tcgcttaacc gcgagcacgg cactacgctg attctggtga cgcacgaccc
     9121 ggcgctggcg gcgcgctgcg accggcggct acggttggtc aacggtcagt tacaggagga
     9181 ggcatgatag cccgctggtt ctggcgcgaa tggcgctcgc cgtcgctgat tattgtctgg
     9241 ctggcgttga gtctggcggt ggcctgcgta ctggcgctcg gcagtatcag cgaccggatg
     9301 gaaaaagggt taagtcagca aagccgcgag tttatggcag gcgatcggac gctgcaaagt
     9361 tcgcgggagg taccgaaagc ctggcttgaa gaggcgcgta aacgcggcct taacgtgggc
     9421 gagcagttaa cctttgcgac catgacgttt gccggcgata cgccgcaact ggccagcgtg
     9481 aaggcggtag atagcgttta tccgatgtac ggcgaattgc aaacccgtcc aggcggagtg
     9541 aaaccgcagc cgggtagcgt actgctggcg ccgcgtctga tggcgctgct taatttgaaa
     9601 acgggcgata ccattgatgt cggcgacgtg accttgcgta ttgctggtga agtggtgcag
     9661 gagccggatt ccggatttaa cccttttcag atggcgccgc gtctgatgat gaatatggcc
     9721 gatgtggcaa aaaccggtgc gatacagccg gggagtcgcg tgatgtggcg gtataaattc
     9781 ggcggaacgc cgcaacagct tgctggctat gaaagctggc tgttaccgca gcttaaaccg
     9841 gaacatcgct ggtacggact ggagcaggat gacggggcat tggggaaatc gctcgaacgt
     9901 tcgcagcagt ttttgctgct ttcggcgtta ttaacgctac tgctggcggt agctgccgtc
     9961 gcggtggcga tgagccatta ctgccgtagc cgctacgatc tggtggcgat tttaaaaacg
    10021 ttgggcgcgg gccgggccca gttgcgtaaa cttatcatcg gacagtggtt gatggtgctg
    10081 gggctttccg ccgtcacggg aggcgcgatt gggttactgt ttgaaaacat attgctggtg
    10141 ctgctaaaac cggtattgcc cgccgatttg ccgcccgcca gcctgtggcc ctggctgtgg
    10201 gcgctgggcg cgatgacggt catctctctg ctggtcggtt tacggcctta tcgattgttg
    10261 ctggcgagcc agccgctacg ggtgctgcgc cgcgatgttg tcgctcgcgt ctggtcgtta
    10321 aaaatttatt tgcctgtcgc ctgcgccgtc gtggtggcgc tgctcgccgg attgatgggc
    10381 gaaagtatgc tgttgtgggc ggttctggcg ggcgccgtga tactggcgct gctgtgcggt
    10441 ctggtgggct ggatgctgct taacgtgttg cgcggcatga cgttgacgtc gctaccgctg
    10501 cgtctggccg tcagccgact tctgcgtcag ccgtggtcaa cgttgagtca gctttcggcg
    10561 ttttcgcttt cgtttatgct gctggcgctc ttgctggtgc tgcgcggcga cctccttgat
    10621 cgctggcaac agcagctccc gccggaaagc ccgaactatt tccttatcaa tattgcttca
    10681 gaacaggtcg cgccgctgaa agcctttttg gcggaacatc aggtgatccc gcagacgttt
    10741 tatccgattg tgcgggcgcg gttaacggag ataaacggta atccgacgga aggtcagcag
    10801 gatgagtcgc tcaaccgtga actgaatttg acctggcagg atacgcgccc ggcgcataat
    10861 ccgctggtcg ccggtcactg gccgccaaaa ccgggcgaag tctctatgga agaggggctg
    10921 gcgaagcggc tgaacgtcaa actcggcgat agcgtaacct ttatgggcga tacccaggca
    10981 tttagcgcta aagtcaccag cctgcgtcaa gtggactggg aaagcctgcg gcccaacttt
    11041 ttcttcattt ttccttccgg ggcgctggac gggcaaccac aaagctggtt gaccagtttt
    11101 cgctgggaga atggcaacgg catgttaacg cagcttaacc gcgagtttcc taccgtcagc
    11161 ctgttagata tcggggcgat cctgaaacag gtgggacagg tgctggagca ggtcagtcgg
    11221 gcgctggagg tgatggttgt gctagtcact ctctgcggca tgttgctatt actggcccag
    11281 gtacaggtcg ggatgcgtca gcgccatcag gagctggtgg tgtggcgcac gttaggagcc
    11341 ggaaagaaac tgttgcgtac cacactctgg tgcgaattcg ccatgctggg gttagttgcc
    11401 gggctggtcg ccgcgattgg cgcggagacg gcgctggcga tcttacaaat caacgttttt
    11461 gatttcccct gggagccgga ctggcgttta tgggtcgcac tgccgttttg cggcgcgctg
    11521 ctgctttccg tatgcggcgg ctggcttggc gttcgtttgc ttaaaggcaa agcgctattc
    11581 cgccagttta gcggatgatt catgatgtga ataatttcgc gctggttttt aaaacggcgc
    11641 gtactttttt agtcgcacaa att
//
LOCUS       DAJVSD010000138        11617 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.138, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000138 DAJVSD010000000
VERSION     DAJVSD010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11617
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.138"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(1..1542)
                     /gene="tyrR"
                     /locus_tag="OQP62_002899"
     CDS             complement(1..1542)
                     /gene="tyrR"
                     /locus_tag="OQP62_002899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator TyrR"
                     /protein_id="HCS1722399.1"
                     /translation="MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIGRIYLNFA
                     ELEFTDFSSLMAEIRRISGVTDVRTVPWMPSEREHLALSALLEALPEPVLSLDMKSKV
                     EMANPASCQLFAQSQERMRHHTAAQLINGFNFQRWLDGNPQSSHNEHVVINGQNFLME
                     ITPVHLQNENDEYVLTGAVVMLRSTIRMGQQLQNLSTQDLSAFSQIIAVSAKMKHVVE
                     QARKLAMLSAPLLITGDTGTGKDLFAYACHQASPRSAKPYLALNCASIPEDAVESELF
                     GHAPEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEIHVDVR
                     VICATQKNLVELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ
                     GVPRPKLSADLSTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDILLPDYDAATV
                     AVGEDAMEGSLDDITSRFERSVLTQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLSQ
                     KKGEE"
     gene            complement(1690..2751)
                     /locus_tag="OQP62_002900"
     CDS             complement(1690..2751)
                     /locus_tag="OQP62_002900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01620 family protein"
                     /protein_id="HCS1722400.1"
                     /translation="MSEPLKPRIDFAEPLKEEPTSAFKAQQTFSEAESHTFAPAAIDE
                     RPEDEGVAEAAVDAALRPKRSLWRKMVMGGLALFGASVVGQGVQWTMNAWQTQDWVAL
                     GGCAAGALIVGAGVGSVVTEWWRLWRLRQRAHERDEARELLHSHSVVKGRAFCEKLAQ
                     QAGIDQSHPALQRWYAAIHETQNDREIVGLYAHLVQPVLDAQARREISRFAAESTLMI
                     AVSPLALVDMAFIAWRNLRLINRIATLYGIELGYYSRLRLFRLVLLNIAFAGASELVR
                     EVGMDWMSQDLAARLSTRAAQGIGAGLLTARLGIKAMELCRPLPWADNDKPRLGDFRR
                     QLIGQLKETLQKSKSSPEK"
     gene            complement(2748..4145)
                     /locus_tag="OQP62_002901"
     CDS             complement(2748..4145)
                     /locus_tag="OQP62_002901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcjX family protein"
                     /protein_id="HCS1722401.1"
                     /translation="MKRLKTELNALVNRGVDRHLRLAVTGLSRSGKTAFITAMVNQLL
                     NVHAGARLPLLSAVREERLLGVKRVPQRDFGIPRFTYDEGILQLYGNPPAWPTPTRGV
                     SEIRLALRYRSNDSLLRHFKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMNGLL
                     QGQRAEWAAKWRQLCDGLDPLAPADENRLAEIAAAWTDYLHQCKSQGLHFIQPGRFVL
                     PGDMAGAPALQFFPWPDVDAFGESKLAQADKQTNAGMLRERFNYYCEKVVKGFYKNHF
                     LRFDRQIVLVDCLQPLNSGPQAFNDMRLALTQLMQSFHYGQRTLFRRLFSPVIDKLLF
                     AATKADHVTLDQHANMVALLQQLIQDAWQNAAFEGISMDCLGLASVQATTSGVIEVNG
                     EKIPALRGNRLSDGAPLTVYPGEVPSRLPGQAFWDKQGFQFEAFRPQVMDVDKPLPHI
                     RLDAALEFLIGDKLR"
     gene            complement(4294..4608)
                     /gene="pspE"
                     /locus_tag="OQP62_002902"
     CDS             complement(4294..4608)
                     /gene="pspE"
                     /locus_tag="OQP62_002902"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase PspE"
                     /protein_id="HCS1722402.1"
                     /translation="MLKKGIFALALFVAMPLYAAEYWIDVRIPEQYQREHIQGAINIP
                     LKEIKSHIETVVPDRNDTVKLYCNSGRQSGMAKQMLLDMGYTHAMNMGGISRLDMPKV
                     KK"
     gene            complement(4684..4902)
                     /gene="pspD"
                     /locus_tag="OQP62_002903"
     CDS             complement(4684..4902)
                     /gene="pspD"
                     /locus_tag="OQP62_002903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein PspD"
                     /protein_id="HCS1722403.1"
                     /translation="MNTRWQRAGQKVKPGFKIAGKLVLLTALRYGPAGVAGWAVKSVA
                     RRPLKMLLAFALEPVLRKAANKISQRYK"
     gene            complement(4925..5284)
                     /gene="pspC"
                     /locus_tag="OQP62_002904"
     CDS             complement(4925..5284)
                     /gene="pspC"
                     /locus_tag="OQP62_002904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspC"
                     /protein_id="HCS1722404.1"
                     /translation="MSGINLNKKLWRMPQKGMVRGVCAGIADYLDVPVKLVRILVVLS
                     IFFGLAFFTVVAYIVLSFVLDPMPDNLAAGKPQPTSGELLDTVDRELAAGEKRLREME
                     RYVTSDTFTLRSRFRQL"
     gene            complement(5284..5508)
                     /gene="pspB"
                     /locus_tag="OQP62_002905"
     CDS             complement(5284..5508)
                     /gene="pspB"
                     /locus_tag="OQP62_002905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspB"
                     /protein_id="HCS1722405.1"
                     /translation="MSALFLAIPLTIFVLFVLPIWLWLHYSNRAGRGELSQSEQQRLL
                     QLTDDAQRMRERIQALEDILDAEHPNWRER"
     gene            complement(5568..6236)
                     /gene="pspA"
                     /locus_tag="OQP62_002906"
     CDS             complement(5568..6236)
                     /gene="pspA"
                     /locus_tag="OQP62_002906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein PspA"
                     /protein_id="HCS1722406.1"
                     /translation="MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVR
                     SNSARALAEKKQLSRRIEQATAQQTEWQEKAELALRKDKDDLARAALIEKQKLTDLIA
                     TLEQEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGK
                     LDEAMARFESFERRIDQMEAEAESHRFGKQQSLDQQFANLKADDEISEQLAQLKAKMK
                     QDNQ"
     gene            6407..7387
                     /gene="pspF"
                     /locus_tag="OQP62_002907"
     CDS             6407..7387
                     /gene="pspF"
                     /locus_tag="OQP62_002907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein operon transcriptional
                     activator"
                     /protein_id="HCS1722407.1"
                     /translation="MAEFKDNLLGEANCFLEVLEQVSRLAPLDKPVLIIGERGTGKEL
                     IANRLHYLSSRWQGPLISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGG
                     TLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVKEGT
                     FRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELRLPLFPGFTDRAKETLL
                     HYAWPGNVRELKNVVERSVYRHGSSEHPLDEIVIDPFQRYPAEPPAPALPAASATPDL
                     PLNLREFQLQQEKALLQRSLQQAKFNQKRAADLLALTYHQFRALLKKHQL"
     gene            7499..9148
                     /gene="sapA"
                     /locus_tag="OQP62_002908"
     CDS             7499..9148
                     /gene="sapA"
                     /locus_tag="OQP62_002908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein SapA"
                     /protein_id="HCS1722408.1"
                     /translation="MRLVLSSLIVIAGLLSSQATAATAPEQTASADIRDSGFVYCVSG
                     QVNTFNPQKASSGLIVDTLAAQLYDRLLDVDPYTYRLVPELAESWEVLDNGATYHFHL
                     RRDVSFQKTAWFTPTRKLNADDVVFTFQRIFDRRHPWHNINGSSFPYFDSLQFADNVK
                     SVRKLDNNTVEFRLTQPDASFLWHLATHYASVMSAEYAAQLSRKDRQELLDRQPVGTG
                     PFQLSEYRAGQFIRLQRHDGFWRGKPLMPQVVVDLGSGGIGRLSKLLTGECDVLAWPA
                     ASQLTILRDDPRLRLTLRPGMNIAYLAFNTDKPPLNNPAVRHALALSINNQRLMQSIY
                     YGTAETAASILPRASWAYDNDAKITEYNPQKSREQLKALGIENLTLHLWVPTSSQAWN
                     PSPLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMNHDLTLSGWATDSNDPDSFF
                     RPLLSCAAINSQTNFAHWCNPEFDSVLRKALSSQQLASRIEAYDEAQNILEKELPILP
                     LASSLRLQAYRYDIKGLVLSPFGNASFAGVSREKHEEVKKP"
     gene            9145..10110
                     /gene="sapB"
                     /locus_tag="OQP62_002909"
     CDS             9145..10110
                     /gene="sapB"
                     /locus_tag="OQP62_002909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter permease SapB"
                     /protein_id="HCS1722409.1"
                     /translation="MIIFTLRRLLLLLVTLFFLTFIGFSLSYFTPHAPLQGASLWNAW
                     VFWFNGLLHWDFGVSSINGQLISEQLKEVFPATMELCILAFGFALMVGIPVGMLAGVT
                     RSKWPDRFISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYEVKPVTGFA
                     IIDAWISDSPWRDEMVMSAIRHMVLPVLTLSVAPTTEVIRLMRISTIEVYDQNYVKAA
                     ATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLIHAI
                     RQQDYAAISAGVMVIGSLVIVVNVISDILGAMANPLKHKEWYALR"
     gene            complement(10260..10696)
                     /locus_tag="OQP62_002910"
                     /pseudo
     CDS             complement(10260..10696)
                     /locus_tag="OQP62_002910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308311.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
     gene            complement(11075..11500)
                     /locus_tag="OQP62_002911"
     CDS             complement(11075..11500)
                     /locus_tag="OQP62_002911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000727929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="subtilase cytotoxin subunit B-like protein"
                     /protein_id="HCS1722410.1"
                     /translation="MKKKLKVLTLALASISSVCYAAMADYDTYVSNVQINNLSYGVYT
                     SGGKETQFFCIGLKHGSEAISINAMCKVDVYGNHKQGFDNMLNTAKYYYTTGGDVRIY
                     YKENVWRDPDFKSAFSSRELIAITTCSSSSYCMGPTVTN"
BASE COUNT         2754 a         3221 c         2787 g         2855 t
ORIGIN      
        1 ctactcttca cccttcttct ggctcagacc atattcacgc agcttattgg caatcgcggt
       61 atgcgatacc cccaaccgtt tcgccagttt acgcgtactc ggatagctac gataaagctg
      121 agtaaggaca gaacgttcga aacgactggt aatgtcatcc agcgaacctt ccatcgcatc
      181 ctcgccgact gccaccgtcg cggcatcgta gtcaggcaac aggatgtcct gcggacgcag
      241 ctcataccct tccagttgcg tcagcgcccg ataaatcgca tttttaagct ggcgaacgtt
      301 acccggccag ccgtaacgag tgaggaccgt actcagatcg gcagacagtt tcggtcgtgg
      361 aacgccctgt tcgtcggcaa aacgcgccac gaacagttcg gtcaacggca taatatcctg
      421 cggacaatcg cgcaacggcg gcaaattaag cgtcagaacg ttaagtcgat aatagagatc
      481 ttcgcggaac agtccttttt gcaccagctc caccagattt ttctgcgtgg cgcagataac
      541 gcggacatca acatgaattt cgtgatcttc gccgacacga cggaacgtac catcattgag
      601 aaaacgcagc agcttcgcct gcatacgcgg tgacatttcg ccaatttcat ccagcagcac
      661 cgagccgcca ttcgcctgtt caaaaaagcc ttttttacct tccggcgcat ggccaaatag
      721 ttcgctttct accgcatctt ccgggattga agcgcagttg agcgccagat acggtttcgc
      781 tgaacgaggg cttgcctgat gacaggcata ggcgaaaaga tctttgccgg ttcccgtatc
      841 gccggtaatc agcagcggcg cgctgagcat cgccagtttg cgcgcctgct caacgacgtg
      901 cttcatcttt gcgctcacgg caataatctg actaaacgcg ctcagatcct gcgtggacaa
      961 attctgtagc tgctgtccca tacgaatcgt ggaacgcaac atcacgaccg ccccggtcaa
     1021 cacgtattcg tcattttcgt tttgtaaatg taccggcgta atctccatca ggaagttttg
     1081 cccgttgatc acgacatgtt cgttatggga gctttgcggg ttaccgtcca gccagcgctg
     1141 aaaattgaag ccgttgatta attgtgcggc ggtatggtgc cgcattcgct cctggctctg
     1201 ggcaaaaagt tgacaactcg ccgggttcgc catctccact ttactcttca tatccaatga
     1261 gagcaccggc tccggcaacg cctcaagcag cgcgctcagg gccagatgtt cacgttcgga
     1321 cggcatccag ggaacggtac ggacatccgt tacgccggaa atacggcgga tttcggccat
     1381 caggctgctg aagtcggtga attccagctc agcaaaatta agataaattc gcccaatggg
     1441 atcaatctcg attccgcgta aatcaatgct acgtaacacc agtaaatcaa gtaattcgcg
     1501 ggtcagacca agtcggtctt cacaaaagac ttccagacgc atgggaacct tcacctgaat
     1561 aatgaaccat taaatagatg ataagccact attcggctgg caggaaggat tctgtcaaca
     1621 aatattgaca gcatggcgga aaaacgggcg ctgcggcgta aagccaggca atcagcgccc
     1681 tgtggaaggt catttctcag gcgacgactt actcttttgc agcgtctctt ttagctgacc
     1741 gataagctga cgacgaaaat caccgagacg tggtttatcg ttatcggccc acggcaatgg
     1801 tcgacatagc tccatcgctt ttattcccag tcgagcggta aggaggcctg cgccaatccc
     1861 ctgcgccgcg cgcgtagaca ggcgtgcggc cagatcctga gacatccagt ccataccgac
     1921 ttcacgcacc agctcactgg cccccgcaaa cgcgatattc agcaacacca gacggaacag
     1981 acgaaggcgg ctgtaataac caagttcaat gccatacagc gttgcgatgc ggttaatcag
     2041 gcgtaaatta cgccaggcaa taaacgccat atccaccaac gctaacggac tgacagcgat
     2101 catcagagtc gattccgcgg cgaaacggct aatctcacgt cgcgcctgcg cgtcaagtac
     2161 cggctgtacc agatgcgcat acaagccgac gatttccctg tcgttttgcg tttcgtgaat
     2221 agcggcatac caacgttgta atgccggatg tgattgatca atccccgcct gctgcgccag
     2281 tttttcgcaa aatgcgcgac ctttcacgac gctatggcta tgtaacagtt cacgcgcctc
     2341 atcgcgctca tgcgcccgct ggcgcaagcg ccataatcgc caccactccg tgaccaccga
     2401 tcccacgcca gcgccaacga tcagcgcgcc tgcggcacag ccgcctaaag cgacccagtc
     2461 ctgagtttgc caggcattca ttgtccactg tacgccttgc ccgaccacgc tcgcgccaaa
     2521 cagcgccagc cctcccatca ccattttacg ccacaggctg cgtttggggc gcagcgcggc
     2581 atcgaccgcc gcttctgcca cgccttcgtc ttccgggcgc tcatcgatag ccgcaggcgc
     2641 aaatgtatgc gactccgctt cgctgaaagt ttgctgcgct ttgaaggccg atgtaggttc
     2701 ctcctttagc ggttctgcaa aatcaatacg cggttttaac ggttcgctca tcgcagctta
     2761 tctcctatta aaaactccag cgcagcgtcc agacgaatgt gtggtaatgg tttatcaaca
     2821 tccattacct gcggacgaaa ggcttcgaac tgaaagccct gcttatccca aaacgcttgt
     2881 cccggcaaac gcgaaggcac ttcgccgggg tacacggtta acggcgcgcc gtcactcaaa
     2941 cggtttccac gtaaagccgg gattttttca ccgttgacct caatcacgcc gctggtggtc
     3001 gcctgtaccg acgccagccc caggcaatcc atactaatgc cttcaaacgc ggcattttgc
     3061 caggcatcct gaataagctg ctggagcaag gccaccatat tggcatgttg gtcgagggtg
     3121 acatggtcgg ctttcgtcgc ggcgaacagc aatttatcaa tcaccggcga aaacaagcgg
     3181 cgaaacagag ttcgctgacc atagtgaaaa ctttgcatca gctgcgttaa agcgagacgc
     3241 atatcattaa acgcctgcgg cccgctatta agcggttgca gacagtcgac cagcacaatc
     3301 tggcgatcaa agcgtagaaa atgatttttg tagaaccctt tgaccacctt ttcgcaatag
     3361 tagttaaagc gttcgcgcaa cattccagcg ttggtctgtt tatccgcctg cgccagtttt
     3421 gactcgccga aggcgtccac atccggccac gggaaaaact gcaacgctgg cgcgcccgcc
     3481 atatcgcccg gcaaaacaaa ccgtccaggc tgaataaaat gcaatccctg cgatttacac
     3541 tgatgcaaat aatccgtcca ggcggcggca atctccgcca gccgattttc atcggcgggc
     3601 gccagcggat cgagcccgtc gcaaagttgc cgccattttg cggcccactc agcgcgttgc
     3661 ccttgtaaca agccgttcat ctgacgggac cagcttaaat aatcctgagc cagcatgggc
     3721 agatcgagta accattcccc tggatagtcc acaatctcca gatacaatgt cgaggtatct
     3781 ttaaaatggc gcagcagcga gtcgtttgag cgatagcgca acgccagccg aatctcactg
     3841 acgccgcgcg tcggtgtggg ccaggcggga ggattgccat aaagctgaag tatcccctcg
     3901 tcgtaggtaa aacggggaat accaaaatca cgttgaggca cgcgctttac gccaagcagg
     3961 cgttcttcgc gtaccgcgct gagcaacggt aagcgcgcgc ccgcgtggac attaagcaac
     4021 tggttaacca tcgccgtgat aaacgctgtt ttaccgctgc ggctcaaccc ggttacggca
     4081 agacgcaaat gcctgtctac cccacgattg accagcgcgt tgagttcagt tttaagtcgc
     4141 ttcattgaca tcctgttgag cctgaagaga agaaaaaata ataacgagcc tgcgttatag
     4201 atatgtgcaa aaacgttatt atcaactacc cggagagatc aacaacggcg cattaagcgc
     4261 cgcggttagt atgagtattg agcaatagat tatctatttt tttactttcg gcatatcaag
     4321 acgactgatg ccgcccatat tcatcgcgtg cgtatacccc atatcaagca acatttgttt
     4381 tgccatgccc gactgtcgcc cggagttgca atataacttt accgtatcgt tcctgtctgg
     4441 aactaccgtt tcgatatgag atttaatctc cttcaatggg atattaatcg cgccctgaat
     4501 atgctctcgt tgatattgtt ccggaatgcg gacatctatc cagtattctg cggcataaag
     4561 cggcatggct acgaataacg ctaacgcaaa tattcctttt ttcaacatac tcccgtcctg
     4621 acacgtaatg tatttcgcac acactatacg ccagagctta acgaaatatt atgaccagac
     4681 tcgctatttg taacgctgcg aaattttatt cgccgcctta cgaagtactg gctccagcgc
     4741 aaacgccagc aacattttta gcggacgacg ggcgacggat tttaccgccc atcccgccac
     4801 gccggcaggc ccgtagcgta acgcggtcaa cagaaccagc ttacctgcta ttttgaagcc
     4861 gggcttcacc ttctgcccgg cgcgttgcca gcgagtattc atcttcacct tcccgatata
     4921 tcagttacag ttgacggaaa cgactacgca gtgtgaacgt atctgacgtg acgtagcgtt
     4981 ccatttctcg caaacgcttt tcgcctgcgg caagctctct gtctacggta tccagcagtt
     5041 cgccgctggt cggctgcggt ttccctgcgg ccagattatc cggcataggg tccagtacaa
     5101 aagacaggac gatataggcc actacggtaa aaaacgccag cccaaagaaa atcgacagca
     5161 cgaccagaat acgcaccagt tttaccggta catcaaggta gtcggcgatc ccggcgcaaa
     5221 cgccacgcac catgcccttt tgcggcatac gccatagttt tttattcaga ttgattccac
     5281 tcattagcgc tctctccagt tcggatgctc tgcatcaaga atatcttcca gcgcctgaat
     5341 gcgctcgcgc atacgttgcg cgtcgtctgt gagttgcagt aagcgttgct gctcgctttg
     5401 cgacagttct ccccgaccgg cgcggttgct gtaatgcagc cacagccaaa tcggtaacac
     5461 aaacaacaca aaaatggtta acgggatggc cagaaatagc gcgctcatgc gttctcctta
     5521 cacctaaagc tgatgagcga cggcgcgtac cggcgccgcc attgtcatta ttgattatct
     5581 tgcttcattt tggctttcaa ctgcgccagc tgctcgctga tttcatcatc ggctttcagg
     5641 ttggcaaact gttggtccag cgattgctgc ttaccaaaac gatggctttc cgcttccgct
     5701 tccatttgat cgatacgacg ttcaaaggat tcaaaccgcg ccatggcttc atccagtttg
     5761 ccgctgtcaa gctgacgacg gacatcgcgg gaagaacttg ccgcctgatg acgcagcatc
     5821 agcgcctgct ggcgagcgcg tgtttcgctg agtttgtttt ccagctcgcc aatctctttc
     5881 ttcatgcgcg ccagcgtgtc atccaccagc gtgacttcct gttcaagcgt agcaattaaa
     5941 tcggtcagct tttgtttttc aatcaatgcg gcgcgcgcca gatcgtcttt atctttgcgc
     6001 agagccagtt ccgctttttc ctgccactcg gtctgctgag ccgtagcctg ttcaatacga
     6061 cgggataact gtttcttttc cgctaaagct cgcgcggagt tcgagcgaac ctccactagc
     6121 gtatcttcca tctcctgaat catcaggcgc accagcttct gcggatcttc cgctttttcc
     6181 aacaacgcat tgatattggc gttcacgatg tcggcaaaac gagaaaaaat acccataatt
     6241 caatcctcac ataatgttct gataacgggc gatgccctgc tacatgatta atacaatttg
     6301 cgtgccaact ttttatatta ttgatagtta aggaattatt tcgttttacc tcgccagcca
     6361 aaaaggataa agtggtgaaa aacactaaca agtggcgatt ttcatcatgg ctgaatttaa
     6421 agataacctg ctcggcgagg caaactgttt tcttgaagta ctggaacaag tctcccggct
     6481 cgcgccgctg gataagccag tgctgattat tggcgaacgc ggtacgggta aagaacttat
     6541 cgccaatcgc ctgcactatc tctcttcacg ctggcagggg ccgcttatct cgcttaactg
     6601 cgcggcgctt aacgaaaatc tgctggactc cgaactgttt ggccatgaag cgggcgcttt
     6661 taccggggcg caaaaacgcc atcccggtcg ttttgaacgc gccgatggcg gcacgctgtt
     6721 tttggatgaa ctggcgacag cgccaatgct ggtacaggaa aagctactgc gggtgattga
     6781 atatggcgag ctagagcgcg tcggcggcag ccaaccgtta caggttaatg tgcgattagt
     6841 atgcgccact aatgccgatt tacccgccat ggtgaaggaa gggacatttc gtgccgatct
     6901 gctcgacagg ctggcttttg acgttgtaca actgccgccg ctgcgcgaac gccagagcga
     6961 tatcatgctg atggccgagc attttgctat tcagatgtgt cgtgagctac gtctgccctt
     7021 atttcctggt tttaccgatc gggcaaaaga aacgttgttg cattacgcct ggccgggtaa
     7081 tgtccgcgag ctgaaaaacg tagtcgaacg ttcagtgtat cgccacggca gcagcgaaca
     7141 tcctttggat gaaattgtta tcgatccttt tcaacgctat cccgccgaac cgcccgcgcc
     7201 cgccctgcca gcggcatccg ccacgcctga cctgccgctc aacttgcggg agtttcaact
     7261 gcaacaggaa aaagcgctgc tgcaacgtag cttacagcag gcgaaattta accagaaacg
     7321 agccgccgat ttgctggcgc tcacctacca ccagtttcgc gccttgctta aaaagcatca
     7381 gctttagcta tttctccggc taattgacga catttacgcc agttatccac cgacattttt
     7441 acgtggcggg ccgaagtgcg atacactttg caaattgaac ttcaaaaact taactattat
     7501 gcgcctggtt ttatcatctc tgatcgtgat agcgggtcta ctgagtagtc aggctacggc
     7561 tgcgactgcg cccgaacaaa ctgcgagtgc agatattcgc gatagcggct ttgtgtattg
     7621 tgtcagcggg caggtcaaca cctttaatcc gcaaaaagcg agtagcggcc tcatcgtcga
     7681 taccctggcc gcccagttat atgaccgcct gttggatgtc gatccctata cttatcgttt
     7741 agtcccagag ctggcagaaa gctgggaagt gctggataac ggggcaacgt accattttca
     7801 cctgcgccgc gacgtttcct ttcaaaaaac cgcctggttt acgccgaccc gaaaactcaa
     7861 tgctgatgat gtcgtcttta cctttcagcg gattttcgat cgtcgacatc cgtggcataa
     7921 catcaacggc agtagcttcc cctactttga tagcctacag ttcgccgaca atgtaaaaag
     7981 cgtgcgtaag ctggacaata acaccgttga gtttcgcctg acgcagccag acgcctcctt
     8041 tttatggcat ctggccacgc actacgcttc cgtcatgtct gctgagtacg ccgcgcagct
     8101 tagccgaaaa gatcgtcagg aactgcttga tcggcaaccg gtcggcaccg ggcctttcca
     8161 gctttcggag taccgtgccg ggcagtttat tcgtctccag cgccacgatg ggttttggcg
     8221 cggcaaaccg ctaatgccgc aagtggtggt ggatttaggc tccgggggta ttgggcgttt
     8281 atcgaaatta ctgaccggtg aatgcgatgt tctggcctgg cccgccgcca gccagctaac
     8341 tattttacgc gacgatccgc gtttgcgtct gacgttgcgc ccggggatga atatcgccta
     8401 tctggccttt aacaccgaca agccgccgtt gaataatccc gcagtgcgcc atgcgctggc
     8461 cttatcgatc aacaaccagc gcctgatgca gtcgatttat tacggcacgg cggaaaccgc
     8521 agcctccatt ttaccgagag cctcatgggc ttacgataac gatgccaaaa ttacggagta
     8581 caatccgcaa aaatcgcgcg aacaactaaa agcgctgggc attgagaatc ttacgctgca
     8641 tctctgggtg ccgaccagtt ctcaggcctg gaacccaagc ccgctaaaaa cggcggagct
     8701 tattcaggcg gatatggcgc aagttggcgt aaaagtggtc attgtgccgg ttgaaggtcg
     8761 ttttcaggag gcgcgcctga tggatatgaa tcacgatctg accttatccg gctgggccac
     8821 ggacagcaac gatccggata gctttttcag accgctgtta agctgtgcgg ccatcaattc
     8881 gcaaaccaat ttcgcccact ggtgtaaccc tgaatttgac agcgtgctgc gtaaggcact
     8941 gtcgtcgcag cagttggctt cgcgcataga agcgtatgac gaagcgcaga atatcctgga
     9001 gaaagagctg ccgatactgc cgctggcatc atcactacgc ttacaggctt accgctacga
     9061 tattaaagga ctggtgttaa gcccgttcgg caatgcgtct tttgccggcg tctcccgcga
     9121 aaaacacgaa gaggtgaaaa aaccatgatt atcttcaccc tgcgtcggtt attgctgttg
     9181 ctggtgacgc tattcttcct gacctttatc ggctttagcc tgagctattt tacgccgcac
     9241 gcgccgctac aaggcgcatc attatggaat gcctgggttt tctggttcaa cggtctgctg
     9301 cactgggact ttggcgtgtc cagcattaac ggccagctga tctccgaaca gcttaaagag
     9361 gtgtttcccg ccacgatgga gctgtgcatt ctcgcctttg gttttgcgct gatggtcggc
     9421 atcccggtcg ggatgctggc tggcgtgacg cgtagcaaat ggccggatcg ttttatcagc
     9481 gcgctggcgc tattaggttt ctcaattccg gttttctggc tggcgcttct gctcacactg
     9541 ttcttttcgc tcacactggg gtggctgccg gtatccgggc gatttgacct gctttatgaa
     9601 gttaaaccgg ttaccggttt cgccatcatt gacgcctgga tttcagattc gccgtggcgt
     9661 gatgaaatgg taatgagcgc catacgacat atggttttac cggtgctcac gctttccgtc
     9721 gcgccgacca cagaggtgat ccgcctgatg cgaatcagca ctattgaggt ctacgatcag
     9781 aactacgtta aagcggcggc cacgcgcggc ttgtcgcgct ttacgatttt acgccgtcac
     9841 gtgttgcata atgcgctgcc gccggtcatt ccccgtcttg gtctgcagtt ttcaaccatg
     9901 ttaacgctgg cgatgattac cgaaatggtt ttcagctggc cagggctggg acgatggtta
     9961 attcacgcca ttcgtcagca ggactatgcc gctatttccg ctggcgtgat ggtcattggg
    10021 tcgctggtta ttgtggtcaa tgtgatttcc gatattttgg gtgctatggc taaccctctg
    10081 aaacataagg aatggtatgc cttacgataa gaagcaataa aaatatcatt aaatcaaaaa
    10141 gttatgcttt tatttttgtg ataagttcgt tttttagtac gtaaatatat acatattgtt
    10201 ttctattttc tccggcagtc catgcttcga tgatgattgc cggagattta tcttctctat
    10261 cagcgcctcc gggtttcact gcgtgatgct gcaggaagtt ttctgtacag cgtcgacagc
    10321 ccccataaat aatcgttacc tgctgtcgcg gtacttctga cccaatcaga cgccgggcct
    10381 gcgcctattg ttccaatgtt agtttcggtc gtcggccacc attacgcccc ctcgcccttg
    10441 ccgcttccag tccagcgcgg gttctttcca caatcaattc acgttccatt tcagcgagtg
    10501 cgcccatgac atgaaagaag aatcgcccca ttggcgtcga cgtgtctatg ctgtcggtca
    10561 ggctgcggac attaacgccg cgttcgcgca attcttctac cagaacgacc agatgacgca
    10621 tactgcgacc caggcgatca cgcttccata caaccagtat gtccccttat gataacgtcc
    10681 tgactaaaag gaacaggctt cacgggctgg atttatccaa caaagcgcgt agtgagtgct
    10741 tcccgttagc ctgaatacga aaaaggccac gtaaatgcgc agcctttatg gtgagagttc
    10801 taatcttaag aggcactcca tcaaacaaac cacccacagt tgtcagaagc ttgaaggagt
    10861 gctttggggt gacagtatct gcggcattgt tgccacgaac aacgttcccg caaatgctca
    10921 aaatacaatc ccaaaatccg ctccagtaaa cggtctgaat atcgttgccc cacagatcgc
    10981 tacagccata caggaacctg ataaaggttc agacataatc gtctcaccaa caagattaag
    11041 cctgttcttt agagcgttta atacccagca acatttaatt tgtcaccgta ggccccatac
    11101 aataacttga tgagctacaa gtagttatcg caattaattc cctggaagag aatgcacttt
    11161 tgaaatcggg gtcgcgccaa acattctctt tataatatat ccttacatcc ccccctgttg
    11221 tataataata ctttgctgta tttagcatgt tatcaaaccc ctgtttatga ttcccgtaca
    11281 catccacttt acacatggca ttgatactaa tagcttcact cccgtgcttc agtccgatac
    11341 aaaaaaactg agtttcctta ccccctgacg tatacacacc ataagacagg ttgttaatct
    11401 gaacattact cacatacgta tcataatcag ccatagctgc ataacaaaca ctggatattg
    11461 acgcaagagc aagagtcaga acctttaatt tctttttcat aatccactcc aacaatattt
    11521 accatacttg tatttctatc gtaaacaagc tcaactgctt catggatatt ttcaattggg
    11581 atagaattta cagatacata ctcactttgt aaccgca
//
LOCUS       DAJVSD010000139        11534 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.139, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000139 DAJVSD010000000
VERSION     DAJVSD010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11534
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.139"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..141
                     /locus_tag="OQP62_002912"
     CDS             <1..141
                     /locus_tag="OQP62_002912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium ion-translocating decarboxylase subunit
                     beta"
                     /protein_id="HCS1722411.1"
                     /translation="ARVSNKVGLESDAQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVL
                     AM"
     gene            276..1895
                     /locus_tag="OQP62_002913"
     CDS             276..1895
                     /locus_tag="OQP62_002913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HCS1722412.1"
                     /translation="MFIREITHWFARRSFQNRIFLLILFTSTIVMLAITWYLTDITKE
                     RLHYQVGQRALIQAMQISAMPELVEAVEAHDLSRIKALIDPMRSFSDATYITVGNEKG
                     QRLYHVNPDEIGKYMEGGDSDDALYNAKSYVSVRKGSLGSSLRGKSPIQDSTGKVIGI
                     VSVGYTLEQLESWLNLQISSLLFPMAILLLVLLYCARRFSLHIKKQMLNMEPQQLSQL
                     LIQQSVLFESVFEGLIAIDSHHRITAINQTARRLLNLSQPESELIGYAIHHIVLPEAF
                     FYDAPQKNKKDEIVTFNQMKVIASRMAVIIDNQPQGWVISFRNKDDINTLNLQLSQVR
                     QYADNLRAVQHEHRNLISTIAGLLFLKRYDNALALIQQQSESHQKVLDFISHNFRDHH
                     LAGLLIGKYYRAKELGLELIFDPSSFVEHLPSSLSHNEWISIVGNLLDNAYNATLLNR
                     EGSRQIECLINSEGNEVIIEVADQGCGIDENIRQHIFERGVTTHNNGDHGIGLWLVHS
                     YVKQANGDIIVDNNNSFGTIFTLYIPFTREE"
     gene            1897..2583
                     /locus_tag="OQP62_002914"
     CDS             1897..2583
                     /locus_tag="OQP62_002914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HCS1722413.1"
                     /translation="MDSITTLIVEDEPMLAEILVDTIKLFPQFSIVGIADKLESAKKQ
                     IRLYQPQLILLDNFLPDGKGIDLIRHTISTNYTGRIIFITADNHMDTISDALRMGVFD
                     YLIKPVHYQRLQHTLERFTRYRSSLRSSEQANQTHVDALFNIQAKEQTAEPNSGLRGI
                     DENTFNRVRQIFADPQAVHTADTLAQILGSSKTTARRYLEQGVKNNFLEAEISYGKVG
                     RPERLYRGKV"
     gene            complement(2605..3525)
                     /gene="rihC"
                     /locus_tag="OQP62_002915"
     CDS             complement(2605..3525)
                     /gene="rihC"
                     /locus_tag="OQP62_002915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside hydrolase RihC"
                     /protein_id="HCS1722414.1"
                     /translation="MTASLHIILDTDPGIDDAAAIAAALFAPQLDLQLITTVAGNVSV
                     EKTTRNALQLLHFWNSDIPLAQGAATPLLRPLRDAAYVHGESGMEGYDFVDHQRQPLA
                     KPAFIAIRDVLMNAPEPMTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGSAGRGNF
                     TPNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDFLNKLPALNRTGKMLHS
                     LFNHYRSGSMRTGVRMHDLCAIAWLVRPELFTLQSCFVAVETQGEYTAGTTVVDIEGR
                     LGQPANAQVALALDVDGFRQWVAEVFAYVP"
     gene            complement(3541..4743)
                     /locus_tag="OQP62_002916"
     CDS             complement(3541..4743)
                     /locus_tag="OQP62_002916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase"
                     /protein_id="HCS1722415.1"
                     /translation="MGKIKYRLPTLLAIGFWMDAASATVLELPAWERNYTGTIAGKPV
                     NVNITRFGNTLYGHYCYEPCNQHKAVIVLRGSLQDKEVHLEERVKALSGYWNAEISSS
                     EIKGEWTSADKKRHFPVALIYYKPKNSPDIVLVTNTNDAGGYDPSKEIDCGNTPAISA
                     IKLYRDGKLIQTLDTASVGTCSPFMPQWGDVNFDGYPDLSIVTELLAGPDAPVQTWLY
                     DPAKQRYVDAPASYQEITSPEIDAEHKQIVSYWRGGCCSHGVNVYRWKGKTIELIDRG
                     ESYFQPVISKGKMYNCYMTPSYADGRIIYPLVRKNGHLTPPLSLDGTCQSFWLTGNVR
                     TVIQAEKPGAEPESLEIQWQENKASPGRFCPLVPFVEGDKLSPRLVTDDDVPDTCISR
                     AEYEDIKQ"
     gene            complement(4943..5893)
                     /gene="ispH"
                     /locus_tag="OQP62_002917"
                     /gene_synonym="lytB"
     CDS             complement(4943..5893)
                     /gene="ispH"
                     /locus_tag="OQP62_002917"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HCS1722416.1"
                     /translation="MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRY
                     VVDSLRQRGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKV
                     HMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPEDVWTLNVKNEGK
                     LSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQADVVL
                     VVGSKNSSNSNRLAELAQRMGRTAFLIDDAADIQEAWVKDAACVGVTAGASAPDILVQ
                     NVIARLREFGGGEAVTLEGREENIVFEVPKELRVDVREVE"
     gene            complement(5896..6345)
                     /gene="fkpB"
                     /locus_tag="OQP62_002918"
     CDS             complement(5896..6345)
                     /gene="fkpB"
                     /locus_tag="OQP62_002918"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HCS1722417.1"
                     /translation="MSKSVQSNSAILVHFTLKLDDGSTAESTRNNGKPALFRLGDTSL
                     SEGLEQQLLGLKEGEKKAFSLEPDAAFGVPSPDLIQYFSRREFMAAGEPEVGAIMLFT
                     AMDGSEMPGVIREINGDSITVDFNHPLAGHTVHFDIEVLEIDPALEA"
     gene            complement(6500..7000)
                     /gene="lspA"
                     /locus_tag="OQP62_002919"
     CDS             complement(6500..7000)
                     /gene="lspA"
                     /locus_tag="OQP62_002919"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HCS1722418.1"
                     /translation="MSKPLCSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVGLFP
                     SLNLHYARNYGAAFSFLADSGSWQRWFFAGIAIGICVILLVMMYRSKATQKLNNIAYA
                     LIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADTAICIGAALIVLEGFLPKP
                     TAKEQA"
     gene            complement(7000..9834)
                     /gene="ileS"
                     /locus_tag="OQP62_002920"
     CDS             complement(7000..9834)
                     /gene="ileS"
                     /locus_tag="OQP62_002920"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HCS1722419.1"
                     /translation="MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAA
                     KKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGFDSPYVPGWDCHGLPI
                     ELKVEQEFGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFK
                     TEANIIRALGRIIKNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFRAVD
                     QDAVKAKFGLPGVSGPVSLVIWTTTPWTLPANRAISLAPDFDYALVQIDGQAVILAKD
                     LVESVIQRIGAAEYTILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHT
                     APGHGPDDYVIGQKYGLETANPVGPDGAYLPGTYPTLDGVNVFKANDIVIELLKEKGA
                     LLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDKEGLRQQSLKEIKGVQWIPDWGQA
                     RIESMVANRPDWCISRQRTWGVPMSLFVHKETQELLPIERTLAAMEEVAKRVEVDGIQ
                     AWWDLDPKEILGEDADQYEKVPDTLDVWFDSGSTSYSVVDARPEFAGHAADMYLEGSD
                     QHRGWFMSSLMISVAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGA
                     DILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFNPATDMVKPEE
                     MVVLDRWAVGCAKTAQQEILKAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTA
                     KADSVARRSCQTALYHIAEALVRWMAPIMSFTADEIWGYLPGEREKYVFTGEWYDGLF
                     GLEENEEFNDAFWDDVRYIKDQVNKELENQKANGIKSNLEAKVTLKYADDANGTIKKL
                     KLLGEEVRFIFITSQFVISEQAGGIDDENIQYNAGNTTVQAVVTRAEGDKCPRCWHYT
                     TDVGKVAEHADICGRCVSNIAGNGEQRKFA"
     gene            complement(9879..10817)
                     /gene="ribF"
                     /locus_tag="OQP62_002921"
     CDS             complement(9879..10817)
                     /gene="ribF"
                     /locus_tag="OQP62_002921"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HCS1722420.1"
                     /translation="MKLIRGIHNLSQAPHGCVLTIGNFDGVHRGHRALLQGLQEEGRR
                     RGLPVVVMIFEPQPLELFATDKAPARLTRLREKLHYLAQCGVDYVLCVKFDRRFAALT
                     AQTFISELLVERLGVQFLAVGDDFRFGASRAGDFLLLQKAGAEYGFAVSSTQTFCEGG
                     VRISSTAVRQALAEDNLALAESLLGHPFTISGRVVHGDELGRTIGFPTANLPLRRQVS
                     PVKGVYAVEVTGLGDKPLPGVANIGTRPTVAGVRQQLEVHLLDVVMDLYGRHIDVILR
                     KKIRNEQRFASLDELKAQIARDELTARKFFGLAGQV"
     gene            complement(10825..11040)
                     /locus_tag="OQP62_002922"
     CDS             complement(10825..11040)
                     /locus_tag="OQP62_002922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2575 domain-containing protein"
                     /protein_id="HCS1722421.1"
                     /translation="MQHSLRSDGAGFYQLACCEYSLSMRKIALSGGFWGGVCRMAMKS
                     IFFMFHQGNRRLTLTAVQGILLRFSLF"
     gene            11146..11409
                     /gene="rpsT"
                     /locus_tag="OQP62_002923"
     CDS             11146..11409
                     /gene="rpsT"
                     /locus_tag="OQP62_002923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006117633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HCS1722422.1"
                     /translation="MANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDK
                     AAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA"
BASE COUNT         2847 a         3217 c         2803 g         2667 t
ORIGIN      
        1 gcacgcgtat cgaacaaagt gggcctggaa tcagacgcgc agaacttcct gctgatgcac
       61 gcgatgggcc cgaacgtggc cggggtgatt ggctcggcga tagccgccgg ggtgatgctg
      121 aaatacgtgc tggcgatgta atagtggatg ggatacgcat gtcgtatccc attttcatcc
      181 aaattttttc tgaaagaaaa gtaagtatga actggttcag gttccggtga tgccgaatgc
      241 aagaaaatac cgtaattaaa tatctaaata ccaatatgtt tatacgggaa attacacact
      301 ggtttgccag acgctcgttt caaaaccgga tatttctact gatcctgttt acatccacca
      361 tcgtgatgct ggcaatcacc tggtatctga ccgatatcac gaaagagcgc ctgcattatc
      421 aggtgggcca acgtgcgctt attcaagcaa tgcaaatatc cgctatgcca gaattagttg
      481 aagccgtaga ggcgcatgat ttgtcacgca tcaaagcgct gattgaccca atgcgctcgt
      541 tttcggacgc gacttacatt accgttggca acgaaaaagg tcagcgactg tatcacgtca
      601 acccggatga gatcggcaaa tatatggagg gcggcgatag cgacgacgcg ctgtataatg
      661 ctaaaagcta cgtatcggtg cgcaaaggtt cattaggctc ttccttgcgt ggtaaatccc
      721 cgattcagga cagtaccggt aaagtcatcg gtattgtttc cgtcggctat actctggaac
      781 agttggagag ctggcttaac ttacaaatca gctcgttgct gttcccgatg gcgatactgt
      841 tgctggtgct gttgtactgc gcccgccgct tctcgctgca tattaaaaag cagatgctta
      901 acatggagcc gcagcagctt tcacaactat taattcagca aagcgtgtta tttgagtcgg
      961 tatttgaagg gttgatcgcc attgactccc atcaccgtat taccgccatt aatcaaacgg
     1021 ctcgccgctt actgaatctg agccaaccgg agtctgaact cattggctat gcaatccacc
     1081 atatcgtgtt gccggaggcc ttcttttacg atgcgccgca aaaaaacaaa aaagatgaga
     1141 tcgtcacttt taaccaaatg aaagtcatcg ccagtcgcat ggcggtcatt attgacaacc
     1201 agcctcaggg ctgggttatt agctttcgca acaaagacga tatcaataca ctcaacctgc
     1261 agttaagtca ggtgcggcaa tacgccgata acctgcgcgc cgtgcagcat gagcatcgca
     1321 accttatttc caccattgcc ggactgctgt tcctgaagcg ctacgataat gcgctggcgc
     1381 tgattcagca gcagtcggaa agccaccaaa aagtactcga ttttatttcc cataatttcc
     1441 gcgaccacca ccttgcgggg ctattaatcg gtaaatatta tcgggcaaaa gagctggggc
     1501 tggagctgat tttcgatcct tcaagctttg ttgaacacct gccgtcatcg ctctcgcata
     1561 atgaatggat ttcgattgtt ggcaatttat tggacaacgc ctataacgcc accctgctca
     1621 atcgcgaagg ctcgcgacag attgagtgcc tgatcaatag cgaaggtaat gaagtcatta
     1681 ttgaagttgc cgatcaggga tgtggtattg acgaaaatat ccgccagcat attttcgagc
     1741 gtggagtgac cacccacaac aacggcgatc acggaattgg attatggttg gtgcacagct
     1801 acgtcaagca ggccaatggc gacattatcg tcgataacaa taattctttt ggcaccattt
     1861 ttaccctcta tatccctttt accagagaag aataacatgg atagcattac gacactcatc
     1921 gttgaagacg aaccgatgct agcggaaatc ctggtggaca ccatcaagct ttttcctcag
     1981 ttttcaatcg tcggtatcgc agacaagctg gaaagtgcga agaagcaaat acgcctctat
     2041 caaccacagt taattctatt ggataatttt ttacccgatg gcaaagggat cgatttaatt
     2101 cgtcatacca tcagcaccaa ctacacgggg cgaattattt tcattaccgc cgacaatcat
     2161 atggatacca tcagcgatgc cttacgcatg ggcgtattcg attatctgat taagccggta
     2221 cattatcagc gcctgcagca taccctggag cggttcaccc gttaccgcag ttcgttacgt
     2281 tccagtgagc aggcaaacca gacgcacgtt gatgccttat ttaatatcca ggccaaagaa
     2341 caaaccgcag aaccgaatag cggactgcgg ggaattgatg aaaacacctt caaccgggta
     2401 cgacaaatat tcgccgaccc gcaggcagta catacagcag acactctggc gcaaattctg
     2461 ggcagcagta aaaccactgc ccgacgctat ctggaacaag gcgtgaaaaa taactttctc
     2521 gaagcggaga tcagctacgg gaaagtgggc aggccggaga gactctatcg cggcaaagta
     2581 tgagattatg gcgccaacat gtaattacgg cacataggca aacacctcag ccacccactg
     2641 acgaaaaccg tccacatcca gcgccagcgc cacctgcgcg ttggcgggct gccccagacg
     2701 cccttcaata tcaacgaccg tcgtgcctgc ggtatattcc ccctgcgttt ctacggccac
     2761 aaaacaggat tgcagggtaa aaagctccgg acgcaccagc caggcgatcg cacagagatc
     2821 gtgcatccgg acgccagtgc gcatactacc gctgcgataa tggttgaaca ggctgtgcaa
     2881 catcttaccg gtgcgattca gcgcaggcag tttattcaga aaatctggcg agagcattgc
     2941 ctgattcgtg acatcaagcc cacacatcac aatctccaga ccgctgcgga acaccagcgc
     3001 cgcggcctcc ggatcgacag caatgttaaa ttcagcatta ggcgtaaaat tgccgcgccc
     3061 tgcggaaccg cccatcaaca ccagacggcg aatgttacac gcacactccg gatagtgcat
     3121 cagtagcaac gcaatattgg tcaatggccc aatcgccacc aatgtcatgg gctccggggc
     3181 gttcatcaac acatcccgga tagcgataaa cgcaggcttc gccaacggtt gacgctgatg
     3241 gtcgacaaaa tcatagcctt ccataccgga ttcgccgtgg acgtatgccg catcgcgtaa
     3301 cggacgcagc agcggcgtcg cggccccctg ggcaagtggg atatcgctgt tccagaaatg
     3361 cagaagctgc aacgcattac gggtcgtttt ttcaacggaa acattgcctg cgacggtggt
     3421 tattagttgc agatcaagct ggggggcgaa cagcgcagcg gcaatcgcag ccgcgtcatc
     3481 aatgcccgga tcggtatcaa gaataatgtg tagggatgct gtcattaacg ctctcctgac
     3541 ctattgtttt atatcttcat actcagcgcg actgatacag gtatcaggca catcgtcatc
     3601 cgtcaccaga cgcggactta gcttatcacc ttcgacaaac ggaactaatg ggcaaaaacg
     3661 ccctggcgat gctttgtttt cctgccactg aatctcaagc gattcgggct cagcgccggg
     3721 tttttctgcc tgaatcacgg tacgaacatt accggttagc caaaaagatt gacacgtccc
     3781 atcaaggcta agaggcggcg tcaaatgacc atttttacgt actagcggat aaataatacg
     3841 cccatcagcg taggaaggtg tcatgtagca gttatacatt ttgcctttac ttatcacagg
     3901 ctgaaagtag ctttcaccgc gatcgatcag ttcaatcgtt tttcctttcc agcgatacac
     3961 attgacgcca tggctgcagc aaccgccgcg ccaatagctg acaatctgtt tatgttcagc
     4021 atcgatctct ggtgaagtga tctcctgata agacgcgggc gcatcaacat aacgctgctt
     4081 ggcggggtca tagagccatg tttgtactgg agcatccggc ccagcaagta actctgttac
     4141 aatcgataga tccgggtagc catcaaaatt gacatccccc cattgaggca taaacgggct
     4201 acaggtgccc accgaggcgg tatctaaggt ctgtatgagt ttaccatcac ggtataattt
     4261 tatcgccgaa atggccggcg tattgccgca atcaatctct ttggaagggt cgtaaccccc
     4321 tgcatcattc gtgttcgtga ccagcacaat atcaggggag tttttaggtt tgtaatagat
     4381 aagggcaaca ggaaaatgtc gttttttatc tgcggacgtc cattcgcctt taatctcact
     4441 gctggagatt tccgcattcc agtaacccga aagcgccttt acgcgttctt caagatgcac
     4501 ctctttatcc tggagtgagc cgcgtagaac aatcactgcc ttgtgctgat tgcaaggttc
     4561 atagcagtaa tgcccataaa gcgtgttacc aaatcgcgtg atattaacgt ttaccggttt
     4621 ccccgcgata gtcccggtat agtttcgctc ccaggcgggt agctccagca ccgtagcgct
     4681 tgccgcgtcc atccaaaagc cgatggcgag taacgttggc aatctatatt ttattttgcc
     4741 catttccctt atccctgtag gcattacaac ccaaaaacca gcaacgattg tgctggtttt
     4801 tcagatgaat agcaaaaagg tggggcatta gcaccggatg acgactacgc cttatttttc
     4861 ctgtcgcaca ttgaatatca aaagaaattc ttaagatctg gtcagcgtag catcatcggg
     4921 cagatttctg aattgtgaaa tcttattcga cttcacgaac atccacacgc agctctttcg
     4981 gtacttcgaa aacaatattt tcttcgcgac cctcaagcgt gacagcttcg ccgccgccaa
     5041 actcccgcag acgcgcaata acattctgca ccagaatatc cggcgcggaa gcgccagcgg
     5101 tgacgccgac acaggcggcg tctttcaccc acgcctcctg gatatccgcc gcatcgtcga
     5161 taagaaacgc ggttcttccc atccgttggg ccagttccgc caatcggtta gagttagaag
     5221 agtttttcga gccaaccacc agcactacgt cagcctgctc agccagcgcc cgcaccgctt
     5281 cctgacgatt agtagtggca tagcaaatat cgtctttgcg cgggccgacg attttcggaa
     5341 agcgtttacg cagcgcatca atcacatcgg acgtatcgtc cacggaaagc gtggtttgcg
     5401 tcatgaagga gagcttgcct tcatttttga cattcagcgt ccagacgtcc tctggcgact
     5461 ccaccaggta catcccccct tccggattgc tgtactggcc catggtgcct tccacttccg
     5521 ggtgcccggc gtggccgatg agaatagatt cttcaccgcg acggctggcg cgcgccactt
     5581 ccatatggac tttcgtcacc agcgggcagg tggcgtcaaa aacggtaaga tcgcggcttt
     5641 tcgcctcgtt acgcaccgcc tgggaaaccc catgagcgga gaagatcaga atggcgccat
     5701 ccggcacttc gctaatttgc tctataaaga tcgctccgcg ctggcgcagg ctgtccacta
     5761 catagcggtt atgcacgact tcgtgccgaa cgtaaattgg cgcgccgtaa atggcgagcg
     5821 cattttcaac aatgctgata gcgcggtcta ccccggcgca aaaaccgcgt gggttggcca
     5881 acaggatctg catgtttatg cctccagcgc cggatcgatt tccagcactt caatatcaaa
     5941 gtgaacggta tgcccggcca gcggatggtt aaaatcaacg gtaatcgagt cgccgttgat
     6001 ttcgcgaatc acgccaggca tttcgctgcc atccattgcg gtaaaaagca taatcgcccc
     6061 gacttccggt tcgcccgccg ccataaactc acggcgcgag aaatactgga tcaagtccgg
     6121 actggggacg ccaaacgcgg cgtcaggctc cagcgaaaac gctttctttt ccccttcttt
     6181 caaccccaga agctgctgct ccagaccttc ggaaagcgag gtatcgccaa gacggaacag
     6241 ggctggcttg ccgttattgc gggtagattc cgccgttgag ccatcatcca gtttcagggt
     6301 gaagtgaacg aggatcgcgc tgttgctctg tacggattta gacatgcaaa ttgctcacgt
     6361 gttttgcccg gaggcacaaa gaacgataaa accgtaggcc ggataaggcg ttttcaccgc
     6421 catccggcac cacgtttgcc tgatggcgct gcgcttatca ggcctacaaa accggataag
     6481 cgcaacccgg tatttacgct tatgcctgct ctttcgctgt cggcttcggc aaaaagcctt
     6541 ccagtactat cagcgcagca ccgatacaaa ttgccgtatc ggcaaggttg aacgtcgcga
     6601 aatgccagtc gccgacgtaa aaatcgatca tatcgacaac gaagccgtgc cacagacgat
     6661 cgaacaaatt acccagcgcg ccgccaataa tgagcgcata agcgatgtta ttcagcttct
     6721 gcgtcgcttt cgagcgatac atcatcacca aaagaattac gcagatccct atcgcaatcc
     6781 cggcaaagaa ccagcgctgc cagctgccgc tatccgccag gaagctaaaa gccgcgccgt
     6841 agttacgcgc ataatgcaga ttaagcgacg ggaacagccc taccgtatcc cccagagcga
     6901 aattctggag gatcaggtat ttgctgccca aatcgataat cagcacgact actaccagcc
     6961 atagccagcg tagtcctgtt gaacagagtg gtttactcat caggcaaatt tacgttgttc
     7021 gccattaccg gcgatgttgc tgacacagcg tccgcagata tctgcatgtt ccgccacctt
     7081 gccgacatca gtagtgtagt gccagcagcg cggacactta tcaccctcgg cacgcgttac
     7141 cactgcctga actgtcgtat taccagcatt gtactgaata ttttcatcat caataccccc
     7201 cgcttgctca gaaatcacga actgggaagt aatgaagata aatctgacct cttcgcccaa
     7261 cagtttcagc ttcttgatcg taccgttagc atcgtcagca tatttcagcg tcacttttgc
     7321 ttccaggttc gatttgatgc cattggcctt ctgattttcc agctctttgt tgacctggtc
     7381 cttgatatag cggacatcgt cccagaatgc gtcattaaat tcttcattct cttccaggcc
     7441 aaacaacccg tcgtaccatt cgccggtgaa gacatatttt tcacgctcgc ccggcagata
     7501 gccccagatt tcatcagccg tgaaggacat gatcggcgcc atccagcgaa ccagcgcctc
     7561 tgcgatatga tacagcgcag tctggcagct acgacgcgcg acgctatcgg ccttcgcggt
     7621 gtactggcgg tctttgatga tgtcgaggta gaacgacccc atttcaacgg agcagaagcg
     7681 catcaggcgc tgtaccactt catggaagtc gtaagcttcg tatgccttca gaatctcttg
     7741 ctgcgccgtt ttcgcgcagc ccaccgccca cctgtccagc accaccatct cttccggttt
     7801 gaccatatcg gtggccggat tgaagccatt gaggttcgcc agcaggaagc gcgcggtatt
     7861 acggatacga cgatagctgt cagcagcacg tttcaggatt tcgtcagaga ccgccatttc
     7921 gccggtatag tcagtagacg ccacccacag acgcaggata tccgcgccca gtttattcat
     7981 cacatcctgc ggcgacacgg tgttaccgat ggacttggac atcttgcgcc cctgaccatc
     8041 gacggtgaag ccgtgagtca gtacctggcg gtatggcgct ttgcctttca tcgccacgct
     8101 aatcatcagg gaggacataa accagccgcg atgctggtca gacccttcca gatacatatc
     8161 ggcagcgtga ccggcgaatt ccggacgggc gtcaaccacg gagtaactgg tggaaccgga
     8221 atcaaaccaa acgtccaacg tatccggaac tttctcatat tgatcagcat cttcgccgag
     8281 gatctctttc gggtcgagat cccaccacgc ctggataccg tcaacttcaa cgcgtttcgc
     8341 cacctcttcc atcgccgcca gagtacgctc aatcggcagc agctcctgcg tttctttatg
     8401 cacgaacagc gacatcggta cgccccaggt acgctgacgg gagatacacc agtcaggacg
     8461 gttagcgacc attgattcaa tacgcgcctg accccagtcc gggatccact gaacgccttt
     8521 gatctctttc agcgactgtt gacgaagccc ttctttatcc atgctgacga accactgcgg
     8581 ggtcgcgcgg aaaatgatcg gcgttttgtg acgccaacag cacggatagc tgtgctgcat
     8641 tttttcgaca tgcagtagcg cgcctttttc tttcagcagt tcaataacga tatcgttcgc
     8701 tttgaagacg ttaacaccgt caagcgttgg atatgtgcct ggcaggtaag cgccgtccgg
     8761 cccaaccggg ttagccgttt ccagaccgta tttctgacca atcacatagt cgtccgggcc
     8821 atggccaggt gcggtgtgaa cggcaccggt accagcatcc agggtgacgt gatcgccgag
     8881 gatcgccggc acgtcaaagc ccataaacgg atgggtaaag cgcagcagtt ccagctccgc
     8941 gcctttgacg gtgccgagaa tggtgtattc agccgcgcca atacgctgta tgacgctttc
     9001 aaccagatct ttcgccagaa tcaccgcctg accgtcgatc tgcaccagcg cataatcaaa
     9061 gtccggcgcc agggagatgg cgcggttagc cggcagcgtc cacggcgtgg tggtccagat
     9121 aaccagcgac acagggccgc tcacgcccgg caaaccaaac ttcgctttca ccgcatcctg
     9181 atcgacggca cggaacgcca cgtcgataga cggcgacgtt ttgtcgtaat attcaacttc
     9241 cgcttccgcc agcgcggaac gacagtcaac acaccagtgc accggcttag cgcctttgtg
     9301 cagatgaccg tttttgataa ttctgcccag cgcgcggatg atgttggctt cggttttgaa
     9361 gtccatggtc aggtacggat gcgaccagtc gcccaacacg cccagacgaa tgaagtcttt
     9421 acgctggccg tcaacctgag tggcggcata ttcgcggcac ttggcgcgga attcagcggc
     9481 ggtgaatttc tcgcccggct taccgaactc ctgctcgact ttcagctcga taggcagacc
     9541 gtgacagtcc cagcccggca cgtaaggcga gtcaaatccc gacagtcctt tggacttcac
     9601 gataatgtct ttcagaatct tgttaactga gtgaccaata tgaatgctgc cattcgcata
     9661 tggagggcca tcatgcagaa tgaaggtttt tttgcctttt ttggccgcac gaatgatgcc
     9721 gtacagatca tcatcggtcc aacgcgccag cattcccggt tcacgcttgg cgaggtcgcc
     9781 gcgcatcggg aaccctgttt ccggcaaatt cagggtcgat ttatagtcac tcatcagatt
     9841 ctcggttccg tatttcggtt tgataaacac cgtcagggtt acacctgccc ggctagccca
     9901 aaaaacttgc gggccgttaa ctcatcgcgt gcgatttgcg cttttagctc atcaagcgac
     9961 gcaaatcgct gctcattacg tatcttttta cgcagtatta catctatatg gcgaccgtag
    10021 aggtccatta caacgtccag cagatgcact tccagttgtt gacgcacgcc agccaccgtt
    10081 ggacgagtgc caatgttcgc tacgccgggt aacggcttat cgccaagccc ggtgacttcc
    10141 accgcataga ccccttttac cggtgagacc tgacggcgca gcggtaagtt cgccgtcggg
    10201 aagccaatgg tacgtcccag ctcgtcgcca tgaacgacac gcccggaaat agtaaaggga
    10261 tgtcccagca gactttcggc aagcgccagg ttatcttccg ccagcgcctg tctcactgcg
    10321 gtactactga tacgcacgcc gccttcacaa aaggtttggg tgctggaaac cgcaaaacca
    10381 tactccgccc ccgccttctg taataacaag aaatcgcccg cgcggctagc accaaagcgg
    10441 aaatcatcgc cgacggcaag aaattgcacg ccaagtcgct ccaccagcag ttcgctgata
    10501 aacgtttgcg ccgtcaaagc ggcaaagcgg cgatcgaatt tcacgcatag cacatagtcc
    10561 acgccgcact gcgccaggta atgcagtttt tcacgcaggc gcgtcaggcg ggcgggcgct
    10621 ttatccgttg cgaacagctc cagcggctgc ggttcgaaaa tcatgaccac caccggcaga
    10681 ccgcgtctgc gtccttcttc ctgcaaaccc tgcagtagag cgcgatgccc ccgatgtacg
    10741 ccgtcgaaat taccaatggt cagcacacac ccatgcgggg cctgactgag attatgtatg
    10801 ccgcgtatca gcttcatgtc tgactcaaaa cagtgaaaat cgcaagagta taccttgtac
    10861 agcggttaag gttaaccggc gattgccctg atgaaacata aagaagatgc ttttcatcgc
    10921 catgcggcaa actccgcccc aaaacccgcc gcttaatgca atttttctca tggaaaggct
    10981 gtattcacag cacgcaagct ggtagaatcc tgcgccatca ctacgcaacg agtgctgcaa
    11041 tttaaacggc gcttatttgc acaaatccat tgacaaaaga aggctaaaag ggcatattcc
    11101 tcggcctttg aattgtccat atagaacaca tttgggagtt ggaccttggc taatatcaaa
    11161 tcagctaaga agcgcgccgt tcagtctgaa aaggctcgta agcacaacgc aagccgtcgc
    11221 tctatgatgc gtactttcat caagaaagta tacgcagcta tcgaagctgg cgacaaagct
    11281 gctgcactga aagcatttaa cgaaatgcaa ccgatcgtgg accgtcaggc tgctaaaggt
    11341 ctgatccaca aaaacaaagc tgcacgtcat aaagctaacc tgactgcaca gatcaacaaa
    11401 ctggcttaat cgcctgcttg ttatcagctt tgtagaaaaa cccgcgtaaa gcgggttttt
    11461 ttatgcctgc tatctgccgt ttttctcgtc aaccgctggc gctgacctca ctcgttcacg
    11521 ctcttcctgt gcca
//
LOCUS       DAJVSD010000140        11450 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.140, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000140 DAJVSD010000000
VERSION     DAJVSD010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11450
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.140"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..190
                     /locus_tag="OQP62_002924"
     CDS             <1..190
                     /locus_tag="OQP62_002924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_448379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722423.1"
                     /translation="PGISKEFTVYYRNGAYIAGTFWIANSMTIASELIVGMNGVSKQA
                     YPIFNKSLQQCATRLSIK"
     gene            complement(310..624)
                     /gene="fliE"
                     /locus_tag="OQP62_002925"
     CDS             complement(310..624)
                     /gene="fliE"
                     /locus_tag="OQP62_002925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HCS1722424.1"
                     /translation="MAAIQGIEGGISQLQATAMAANGQETHSQSTVSFAGQLHAALDR
                     ISDRQTAARVQAEKFTLGEPGIALNDVMADMQKASVSMQMGIQVRNKLVAAYQEVMSM
                     QV"
     gene            841..2523
                     /gene="fliF"
                     /locus_tag="OQP62_002926"
     CDS             841..2523
                     /gene="fliF"
                     /locus_tag="OQP62_002926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HCS1722425.1"
                     /translation="MSATASTATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVL
                     WAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQ
                     QGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMP
                     KPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGH
                     LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKE
                     QTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTN
                     QQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVN
                     YKTLADGKPLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELPFW
                     QQQSFIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRRVEEAKAAQEQAQVRQETEEAV
                     EVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWMSNDHE"
     gene            2516..3511
                     /gene="fliG"
                     /locus_tag="OQP62_002927"
     CDS             2516..3511
                     /gene="fliG"
                     /locus_tag="OQP62_002927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HCS1722426.1"
                     /translation="MSNLSGTDKSVILLMTIGEDRAAEVFKHLSTREVQALSTAMANV
                     RQISNKQLTDVLSEFEQEAEQFAALNINANEYLRSVLVKALGEERASSLLEDILETRD
                     TTSGIETLNFMEPQSAADLIRDEHPQIIATILVHLKRSQAADILALFDERLRHDVMLR
                     IATFGGVQPAALAELTEVLNGLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAV
                     REFDGELAQKIIDEMFLFENLVDVDDRSIQRLLQEVDSESLLIALKGAEPPLREKFLR
                     NMSQRAADILRDDLANRGPVRLSQVENEQKAILLIVRRLAETGEMVIGSGEDTYV"
     gene            3504..4211
                     /gene="fliH"
                     /locus_tag="OQP62_002928"
     CDS             3504..4211
                     /gene="fliH"
                     /locus_tag="OQP62_002928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HCS1722427.1"
                     /translation="MSNELPWQVWTPDDLAPPPETFVPVEADNVTLTDDTPEPELTAE
                     QQLEQELAQLKIQAHEQGYNAGLAEGRQKGHAQGYQEGLAQGLEQGQAQAQTQQAPIH
                     ARMQQLVSEFQNTLDALDSVIASRLMQMALEAARQVIGQTPAVDNSALIKQIQQLLQQ
                     EPLFSGKPQLRVHPDDLQRVEEMLGATLSLHGWRLRGDPTLHHGGCKVSADEGDLDAS
                     VATRWQELCRLAAPGVL"
     gene            4211..5581
                     /gene="fliI"
                     /locus_tag="OQP62_002929"
     CDS             4211..5581
                     /gene="fliI"
                     /locus_tag="OQP62_002929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellum-specific ATP synthase FliI"
                     /protein_id="HCS1722428.1"
                     /translation="MTTRLTRWLTALDNFEAKMALLPAVRRYGRLTRATGLVLEATGL
                     QLPLGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGD
                     GLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLE
                     TGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKD
                     FIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTR
                     YAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD
                     QQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALITEQHYARVRLFK
                     QLLSSFQRNRDLISVGAYAKGSDPMLDKAITLWPQLEAFLQQGIFERADWEDSLQALD
                     LIFPTV"
     gene            5603..6046
                     /gene="fliJ"
                     /locus_tag="OQP62_002930"
     CDS             5603..6046
                     /gene="fliJ"
                     /locus_tag="OQP62_002930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis chaperone FliJ"
                     /protein_id="HCS1722429.1"
                     /translation="MAQHGALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLID
                     YQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWR
                     EKKQRLQAWQTLQDRQTAAALLAENRMDQKKMDEFAQRAAMRKPE"
     gene            6043..7272
                     /gene="fliK"
                     /locus_tag="OQP62_002931"
     CDS             6043..7272
                     /gene="fliK"
                     /locus_tag="OQP62_002931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook length control protein FliK"
                     /protein_id="HCS1722430.1"
                     /translation="MITLPQLITTDTDMTAGLTSGKTTGSAEDFLALLAGALGADGAQ
                     GKDARITLADLQAAGGKLSKELLAQHGEPGQAVKLADLLAQKANATDETLTNLTQAQH
                     LLSTLTPSLKTSALAALSKTAQHDEKTPALSDEDLASLSALFAMLPGQPVATPVAGET
                     PAENHIALPSLLRGDMLSAPQEETHTLSFSEHEKGKTEASLARASDDRAMGPSLTPLV
                     VAAAATSAKVEVEVDSPSAPVTHGAAMPTLSSATAQPQPLPVASAPVLSAPLGSHEWQ
                     QTFSQQVMLFTRQGQQSAQLRLHPEELGQVHISLKLDDNQAQLQMVSPHSHVRAALEA
                     ALPMLRTQLAESGIQLGQSSISSESFAGQQQSSSQQQSARAQHTDAFGAEDDIALAAP
                     ASLQAAARGNGAVDIFA"
     gene            7377..7844
                     /gene="fliL"
                     /locus_tag="OQP62_002932"
     CDS             7377..7844
                     /gene="fliL"
                     /locus_tag="OQP62_002932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HCS1722431.1"
                     /translation="MTDSAINKKSKRSIWIPLLVLITLAACATAGYSYWRMQQQPTTN
                     AKAEPAPPPAPVFFVLDTFTVNLGDADRVLYIGVTLRLKDEATRARLNEYLPEVRSRL
                     LLLFSRQNAAELSTEAGKQKLIAAIKETLAAPLVAGQPKQVVTDVLYTAFILR"
     gene            7849..8853
                     /gene="fliM"
                     /locus_tag="OQP62_002933"
     CDS             7849..8853
                     /gene="fliM"
                     /locus_tag="OQP62_002933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HCS1722432.1"
                     /translation="MGDSILSQAEIDALLNGDSDTKDEPTPGIASDSDIRPYDPNTQR
                     RVVRERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL
                     NLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKL
                     ALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNIC
                     LPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFADIPLRLSQIL
                     KLKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINPILNSLNEEQPK
                     "
     gene            8850..9263
                     /gene="fliN"
                     /locus_tag="OQP62_002934"
     CDS             8850..9263
                     /gene="fliN"
                     /locus_tag="OQP62_002934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HCS1722433.1"
                     /translation="MSDMNNPSDENTGALDDLWADALNEKKATTNKSAADAVFQQLGG
                     GDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN
                     GYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR"
     gene            9263..9640
                     /gene="fliO"
                     /locus_tag="OQP62_002935"
     CDS             9263..9640
                     /gene="fliO"
                     /locus_tag="OQP62_002935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460931.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliO"
                     /protein_id="HCS1722434.1"
                     /translation="MMKTEATVSQPTAPAGSPLMQVSGALIGIIALILAAAWVIKRMG
                     FAPKGNSVRGLKVSASASLGPRERVVIVEVENARLVLGVTASQINLLHTLPPAENDTE
                     APVAPPADFQNMMKSLLKRSGRS"
     gene            9640..10377
                     /gene="fliP"
                     /locus_tag="OQP62_002936"
     CDS             9640..10377
                     /gene="fliP"
                     /locus_tag="OQP62_002936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460932.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HCS1722435.1"
                     /translation="MRRLLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSVQT
                     LVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMS
                     PVIDKIYVDAYQPFSEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQ
                     GPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIA
                     LPFKLMLFVLVDGWQLLVGSLAQSFYS"
     gene            10387..10656
                     /gene="fliQ"
                     /locus_tag="OQP62_002937"
     CDS             10387..10656
                     /gene="fliQ"
                     /locus_tag="OQP62_002937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013365797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HCS1722436.1"
                     /translation="MTPESVMMMGTEAMKVALALAAPLLLVALITGLIISILQAATQI
                     NEMTLSFIPKIVAVFIAIIVAGPWMLNLLLDYVRTLFSNLPYIIG"
     gene            10665..>11450
                     /gene="fliR"
                     /locus_tag="OQP62_002938"
     CDS             10665..>11450
                     /gene="fliR"
                     /locus_tag="OQP62_002938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HCS1722437.1"
                     /translation="MIQVISEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKL
                     GLGIMITLVIAPSLPANDTPLFSIAALWLAMQQILIGIALGFTMQFAFAAVRTAGEFI
                     GLQMGLSFATFVDPGSHLNMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIG
                     SNPVNSNAFMALARAGGLIFLNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGF
                     PLTLTVGIMLMAALMPLIAPFCEHLFSEIFNLLADIVSEMPINN"
BASE COUNT         2612 a         3178 c         3220 g         2440 t
ORIGIN      
        1 tccaggtatt agtaaagaat ttaccgtgta ttatcgcaac ggcgcatata ttgcaggaac
       61 attctggatt gcaaactcaa tgacaatagc ctcagaacta atagtaggaa tgaatggcgt
      121 cagtaaacag gcgtacccta tttttaataa gtccctgcaa caatgtgcaa cccgcttatc
      181 aataaaatga gcgcgcctcg caaaaacaag cccacataat cacgcactgg ttgcatgggc
      241 gtcgcgtccc ccgccactga cttaggtaag cgcccgggag ttcgctgcgg atgtgttgtc
      301 agccctggct taaacctgca tggacatgac ttcctgatac gcggcgacca gcttattgcg
      361 cacctgaatc cccatttgca tagagacgga cgctttttgc atatcagcca tcacgtcatt
      421 aagcgcaatg cccggctcac ccagagtgaa tttttccgcc tgaacgcgcg ccgccgtttg
      481 tctgtcgcta atacgatcca gcgcagcatg tagctggccg gcaaaactca ccgtcgactg
      541 cgagtgtgtt tcttgcccgt ttgcggccat cgccgtcgcc tgtaactggc taataccccc
      601 ttcaatcccc tgtattgctg ccatgttatt cccctggatg attttttacg cagcagagat
      661 taccagtttg tcaataagat aaaggcgtta aataacgata aaaaacctcg gtttttagcg
      721 catagaaaaa ttcgaaacca caaataatga gaccgtcaat ttttcgagtt tgctgacccg
      781 ggagtgagtc ttgttccact ttgcaaaaaa cgccgtccac gatcagtcac gaggtgcgag
      841 atgagtgcga ctgcatcgac tgcaacccaa cctaaacctc tcgagtggct taatcgccta
      901 cgcgcgaatc cccgaattcc gttaattgtg gcgggttccg ccgccgtggc gatcgtcgtt
      961 gcgatggtgc tgtgggccaa aacgcccgat taccgcacgc tatttagcaa cctttccgat
     1021 caggacggcg gcgcgatcgt cgcgcagttg acccagatga atatccccta tcgctttgcc
     1081 aatggcagcg gcgcgattga agtgcccgcc gacaaagtgc atgaactgcg tctgcgtctg
     1141 gcgcagcagg ggctgcctaa aggcggcgcg gtaggctttg aactgcttga tcaggaaaaa
     1201 ttcggtatca gtcagttcag cgagcaggtg aattatcagc gcgcgctgga aggtgaactg
     1261 gcccggacga tcgagacgct gggtccggta aaaagcgccc gcgttcacct ggcgatgcca
     1321 aagccgtcgc tatttgtgcg ggaacaaaaa tccccttccg cctccgtcac cgtcacactg
     1381 gaaccgggcc gggcgctgga tgaaggacaa attagcgccg tggtacatct ggtttccagc
     1441 gctgtcgccg gtttgccgcc aggaaacgtc actctggtcg atcaatccgg tcatctgctc
     1501 acgcaatcca ataccagcgg tcgcgacctt aatgacgcgc aattaaaatt tgctaatgat
     1561 gtggaaagcc gcatccaacg ccgtatcgaa gccattctgt cgcctatcgt cgggaacggt
     1621 aatgttcacg ctcaggtaac cgcccagttg gattttgcca ataaagaaca gacggaagag
     1681 cactacagcc cgaacggcga tgcgtcgaag gccactctgc gttcacgtca gttgaatatt
     1741 agcgaacagg taggcgcggg ctatcccggc ggcgtgcctg gcgcgctgtc gaaccaacca
     1801 gcgccgccta acgaggcgcc gatcgccaca ccgccgacca atcaacaaaa cgcgcagaat
     1861 acgccacaaa ccagcaccag taccaacagt aacaacgctg gcccgcgcaa tacgcagcgt
     1921 aatgaaacca gtaactacga agtggaccgc accattcgtc acaccaaaat gaatgtgggc
     1981 gatattgagc gtctctctgt agctgtcgtg gtgaattaca aaacgctggc ggatggcaaa
     2041 ccgctgccat tgaccgccga tcagatgaaa cagatcgagg atttaacccg tgaagcgatg
     2101 ggtttttctg ataaacgcgg cgatacgcta aacgtggtga attcaccgtt tagcgcagtg
     2161 gataacaccg gcggcgaact gcccttctgg caacagcagt cctttatcga tcagttgctc
     2221 gcggcaggtc gctggttact ggtgctggtg gtggcctgga ttctgtggcg caaagcggta
     2281 catccacagt tgacgcgccg cgttgaagaa gcgaaagcgg cgcaggaaca ggcgcaggtt
     2341 cgccaggaaa ccgaagaagc cgtggaagta cgccttagca aagacgagca gctccagcaa
     2401 cgccgggcta accagcgtct gggcgctgag gtgatgagcc agcgtattcg cgaaatgtca
     2461 gacaacgatc cgcgcgtggt ggcgctggtc attcgccagt ggatgagtaa cgatcatgag
     2521 taatcttagc ggtaccgata aaagcgtcat tttgttgatg accattggcg aagaccgggc
     2581 ggcagaggtg tttaaacacc tctccacccg cgaagtacag gcgttaagta cggcgatggc
     2641 taacgtgcgt cagatctcca acaaacaact gacggacgta ctatcagagt ttgagcaaga
     2701 agcggagcag ttcgccgcgc tgaatatcaa cgccaacgaa tacctgcgct ccgtactggt
     2761 taaagcgctg ggcgaagaac gcgcctccag cctgctggaa gatattctgg aaacgcgcga
     2821 taccaccagc ggtatcgaaa cgctcaactt tatggaaccg cagagcgccg ccgacctgat
     2881 tcgcgacgaa cacccgcaga ttatcgccac cattctggtc cacctcaaac gcagtcaggc
     2941 cgccgatatt ctggcactgt ttgacgaacg actgcgtcat gatgtgatgc tgcgtatcgc
     3001 gacatttggc ggcgtacagc cggcggcgct ggcggagttg accgaagtgc tgaatggcct
     3061 gctcgacggt cagaacctga aacgcagcaa aatgggcggc gtaagaaccg cggcagaaat
     3121 tatcaacctg atgaaaacgc agcaggaaga agcggttatt accgctgtgc gcgaattcga
     3181 cggcgaactg gcgcagaaaa tcatcgacga gatgttcctg ttcgaaaatc tggtggatgt
     3241 ggacgatcgc agtatccaac gtctgctgca ggaagtggat tccgagtcgc tgctgatcgc
     3301 tctgaaaggc gccgaaccgc cattacgcga gaagttcctg cgcaatatgt cccagcgcgc
     3361 cgccgatatc ctgcgcgacg accttgccaa ccgtggcccg gttcgtctgt ctcaggtgga
     3421 aaacgagcag aaagcgattc tgcttattgt gcgtcgtctg gcggaaaccg gcgaaatggt
     3481 gattggcagc ggcgaggata cctatgtcta atgaattgcc gtggcaagtc tggacccccg
     3541 acgatctcgc tccgccgccg gagacgtttg tgccggttga ggctgataac gttaccttga
     3601 cagacgatac gccggagccc gaactcactg ccgaacagca gctggagcag gagctggcgc
     3661 agctaaaaat acaggcccat gaacaaggtt ataacgccgg gctggcggag ggacggcaaa
     3721 aaggacacgc gcagggatac caggaagggt tagcgcaagg gctggagcaa ggacaagccc
     3781 aggcgcagac gcagcaggcg ccgattcatg cccgtatgca gcagttagtg agcgagtttc
     3841 agaacacgct tgacgcgctc gatagcgtta tcgcctcacg gctgatgcaa atggccctgg
     3901 aggccgcacg tcaggtcatc ggccaaacgc cggcggtgga caactcagcg ctgattaaac
     3961 agatccaaca actgttgcag caagagccgc tctttagcgg caagccgcag ttgcgcgtgc
     4021 atccggacga cttacagcgg gtggaagaga tgctgggcgc cacgctcagt cttcacggat
     4081 ggcggttgcg cggcgatcca acgttgcatc acggcgggtg taaagtctct gccgatgagg
     4141 gcgatctgga cgccagcgtc gccactcgct ggcaagagtt gtgtcgcctg gcggcgccgg
     4201 gagtgctctg atgaccacgc gcctgacccg ctggcttacc gcgctcgaca actttgaagc
     4261 aaaaatggcg ttattgccgg cggtgcgccg ttatggacgt ttaacccgcg ccactggcct
     4321 ggtactggag gccaccggtc tccagcttcc gctgggcgcc acctgcatta ttgagcgcca
     4381 ggacggccct gaaaccaaag aggtggaatc ggaagtcgtc ggttttaacg gccagcgtct
     4441 gtttttaatg ccgctggaag aggtcgaagg cattctgccc ggtgcccgcg tttacgcccg
     4501 taacgggcat ggcgacggtc tgcaaagcgg caaacagtta ccgctcggcc cggccctgct
     4561 tggtcgggtg ctggatggcg gcggtaaacc gctcgacgga ctgcctgcgc cggatacgct
     4621 ggaaaccggc gcgttaatca cgccgccgtt taacccgcta cagcgaacgc caatcgaaca
     4681 tgtgctggaa accggcgtac gcgccatcaa cgcgttgtta accgtagggc gcggtcagcg
     4741 tatgggactc tttgccggtt ccggcgtcgg taaatcggtt ctgcttggca tgatggcgcg
     4801 ctacacacgg gcggacgtga ttgtcgtggg tcttatcggc gaacgtggcc gcgaagttaa
     4861 agattttatc gaaaatattc tcggccccga cggtcgcgcg cgttcggtgg tgatcgccgc
     4921 cccggcggat gtttcgccgc tgctgcgaat gcagggcgcc gcctatgcca cccgcatcgc
     4981 cgaagacttt cgcgatcgcg gacagcatgt gttgctgatt atggattcgc tgacgcgcta
     5041 tgcgatggcg cagcgtgaaa ttgccctggc aatcggcgaa ccgccagcca ccaaaggtta
     5101 tccgccctcg gtgttcgcaa agctgccagc gctggtcgag cgtgccggta atggcatcca
     5161 cggcggcggc tctatcaccg cgttttatac cgtattgacc gagggggacg accaacaaga
     5221 tcccattgcc gactcggcac gcgcaatcct cgacgggcac attgtcttgt cccgccgcct
     5281 ggcggaagcc gggcactacc cggccattga tatcgaggcg tcaatcagcc gggcgatgac
     5341 cgcgctcatt accgagcagc actatgcgcg ggtacggcta tttaaacaat tgctttccag
     5401 tttccagcgt aaccgcgatc tgatcagcgt cggcgcctat gccaaaggca gcgatccgat
     5461 gctcgataaa gccattacct tatggccgca attagaagcg tttttacagc aaggcatttt
     5521 tgaacgggcc gactgggagg actctcttca ggcgctcgat ttaattttcc cgacggtgtg
     5581 ataaatcagg agggcgacga tcatggcaca acatggcgct ctggaaacac tcaaagatct
     5641 ggccgaaaaa gaggtagatg acgcggcgcg tttactgggc gaaatgcgtc gcggctgcca
     5701 acaggcggaa gaacagctca aaatgctgat cgattatcag aatgagtatc gcagtaattt
     5761 gaacaccgat atgggcaacg gcatcgccag taatcgctgg atcaactatc agcagtttat
     5821 tcagacactg gaaaaggcga tagagcagca tcgcctccag cttacgcagt ggacgcaaaa
     5881 agtcgacctg gcgctgaaga gctggcgtga gaaaaagcag cgacttcagg cctggcaaac
     5941 cttacaggac cgacaaaccg cggcagcgct gttagctgaa aaccgcatgg atcagaaaaa
     6001 gatggatgaa tttgctcagc gtgcagcaat gaggaaaccc gaatgatcac cctgccccaa
     6061 ctgatcacca ccgataccga catgaccgcg ggtctgacgt caggaaaaac caccggttca
     6121 gccgaggact ttctggcgct cctggcgggc gcgttaggcg cagacggcgc acagggcaaa
     6181 gacgcccgca tcacgctggc cgatttacag gcggcaggcg gcaagttatc gaaagagcta
     6241 ctggcccaac atggcgagcc gggccaggcg gtgaagcttg ccgacctgct ggcgcaaaaa
     6301 gcgaatgcga cggatgaaac gcttaccaat ctgacacaag cgcagcatct actgtctacg
     6361 ctaacgccat cgttgaaaac cagcgctctg gccgcattga gtaaaacggc gcagcatgat
     6421 gagaaaacgc ccgcgctgag cgatgaggat cttgccagtc tgagcgcctt attcgccatg
     6481 ctgcccggac aacctgtcgc gacgcctgtc gccggagaaa cgccggctga aaatcacatc
     6541 gccttgccgt cactgttacg cggcgacatg ctatcggcgc cgcaggaaga gacacatacg
     6601 ctctctttta gcgagcatga aaaagggaaa accgaggcgt cgcttgcgcg cgccagcgac
     6661 gatcgcgcca tggggccatc actgacgccg ctggtggtcg ctgccgccgc gaccagcgcg
     6721 aaagtggagg tggaggtgga tagcccgtcc gcgccagtaa cgcatggcgc ggcaatgccg
     6781 acgctcagca gcgccacggc gcaaccgcaa ccgctacctg tcgcctcagc cccggtactc
     6841 agcgcgccgt taggcagcca tgaatggcaa caaacgttca gtcagcaggt catgttattt
     6901 acgcgtcagg gacagcaaag cgcgcagctt cgattgcatc cggaagagtt aggtcaggtg
     6961 cacatttcgc tcaagctgga tgacaatcag gcgcagctcc agatggtatc gccgcacagc
     7021 catgtccgcg ccgcgctgga agccgccctg cccatgttac gcacccagtt ggcggaaagc
     7081 ggcattcagt tgggacaaag tagtatcagt agcgaaagct ttgccggaca gcagcagtct
     7141 tcatcgcaac aacagtctgc ccgcgcccaa cacacagacg cgtttggcgc tgaagatgat
     7201 atagcgttag cggcgccggc ctcgcttcag gccgccgcgc gcggcaatgg cgcagtggat
     7261 atcttcgcct aacgccagag gtagcatgat tatccgcgtc ttttccacgc tttgtcgtgg
     7321 acaggacacg ggataatcag ccaataagca gtaccgaaac aggaagcccg tatcagatga
     7381 ctgactccgc gattaacaaa aagagcaaac gctcgatttg gatacctttg ctggtgttga
     7441 ttaccctcgc cgcctgcgcg actgccggtt atagctactg gcgtatgcag cagcaaccga
     7501 ccacgaacgc taaagcggaa ccggctccgc cgcccgcgcc ggtatttttt gtgctggata
     7561 cgtttaccgt caatctgggc gatgcggatc gcgtgttgta tatcggcgtg accctgcgtc
     7621 tgaaagacga agcgacgcgc gcacgattaa atgaatatct gccggaagtg cgcagccgtc
     7681 tgctgttgtt attttcccgt cagaatgccg ccgagctctc aacagaagct ggcaaacaaa
     7741 aactgattgc cgccattaaa gagacgctgg ccgcgccgct cgttgccgga caaccaaaac
     7801 aggtcgtcac tgacgtgctt tatacagctt ttattctgcg gtaacgatat gggcgatagt
     7861 attctttctc aggctgaaat cgatgcgctg ttgaacggcg acagcgacac caaagacgaa
     7921 cccactcccg gtatcgcaag cgatagcgat attcgccctt acgatcccaa tacccagcgt
     7981 cgcgtcgtgc gtgaacgctt gcaggcgctg gagattatta acgagcgttt cgcacgccag
     8041 ttccggatgg gattatttaa cctgctgcgc cgcagcccgg atattaccgt gggcgccata
     8101 cgtattcagc cgtatcacga atttgcgcgt aacctgccag taccgaccaa cctgaacctg
     8161 atccacctga agccgctacg cggcaccggg ctggtggtgt tctcgccgag tctggtgttt
     8221 attaccgtcg ataacctgtt cggcggcgac ggtcgttttc cgaccaaagt cgagggccgc
     8281 gagtttaccc atacggaaca gcgggtcatc aaccgtatgc tgaaactggc gctggaaggc
     8341 tatagcgacg catggaaagc cattaatccg ctggaagtgg agtatgtgcg ttccgaaatg
     8401 caggtgaaat ttaccaatat caccacctcg ccgaacgata tcgtcgtcaa tacgccgttt
     8461 catgtggaga tcggcaatct gaccggtgaa tttaacatct gtctgccatt tagcatgatc
     8521 gagccgctgc gtgagctgct ggtgaatccg ccgctggaaa actcgcgcca tgaagatcag
     8581 aactggcgtg ataacctggt gcgccaggtt cagcactctg aactggagct ggtggccaat
     8641 tttgccgata ttccgttacg tctttcccag attttgaagc tgaaacccgg cgatgtactg
     8701 ccgattgaaa aacccgaccg cattattgct catgtggacg gcgttccggt actcaccagc
     8761 caatatggca ccgtaaacgg acagtatgcg ctacgcgtag aacatttgat caacccaatt
     8821 ttgaattcgc tgaatgagga acagcccaaa tgagtgacat gaataatccg tccgatgaga
     8881 atactggcgc attggatgat ctgtgggctg acgcgttaaa cgagaaaaaa gcgaccacca
     8941 ataaaagcgc cgccgacgcg gttttccaac agcttggcgg cggcgatgtc agcggtgcta
     9001 tgcaggatat cgatctgatt atggatatcc cggtcaaact gaccgtagag ctgggccgca
     9061 cgcgaatgac cattaaagaa ctgctgcgtc tgacgcaggg gtcggtcgtc gcgctggacg
     9121 ggctggcggg cgagccgctg gacatcctga ttaatggcta cctgattgcc cagggtgaag
     9181 tggtcgtcgt ggcggataaa tacggcgtac gtatcaccga tattattacg ccatccgagc
     9241 gtatgcgtcg tttgagtcgt taatgatgaa gacagaggcc acggtttctc agcccaccgc
     9301 gccagccgga tcgccgctca tgcaggtgag cggcgcatta attggcatta ttgcgctcat
     9361 tctggcggcg gcctgggtga ttaagcgtat gggattcgcg ccaaaaggaa atagcgtccg
     9421 gggactgaag gtgtcagcca gcgcctcgct tggcccgcgc gaacgcgtgg tgattgtcga
     9481 ggtcgaaaat gcgcgcctgg tactgggcgt gaccgcctcg cagatcaacc tgctgcacac
     9541 cctcccgccc gcggagaatg acacggaagc acccgttgcc ccaccggcgg atttccagaa
     9601 catgatgaag agcttactca agcgttccgg gagatcctga tgcgccgttt gttattcctt
     9661 tctctggcgg gtctgtggct ttttagtccc gccgccgctg cgcaactgcc ggggcttatc
     9721 agccaaccat tagcgggcgg aggccaaagc tggtcattat ccgtccagac gctggttttc
     9781 atcacctcgc tgacgtttct gccggcgatt ttactgatga tgacgagctt cacgcgtatc
     9841 atcattgttt ttggcttgtt gcgtaacgcg ctgggcacgc cctcggcacc gccaaatcag
     9901 gtgttactcg gactggcgtt gtttttgacc ttttttatta tgtcgcccgt cattgacaag
     9961 atttacgtgg atgcttacca gccgtttagc gagcagaaaa tttctatgca ggaagcgctg
    10021 gataaaggcg cgcaaccgtt acgcgcgttc atgctgcgcc aaacccgcga agccgatctg
    10081 gcgctgtttg cccgtctggc caatagcggt ccgttacagg gaccggaagc agtaccgatg
    10141 cgtatcctcc tgcccgctta tgtcaccagc gaattaaaga cggcgtttca gatcggtttt
    10201 acgattttca tccctttttt gattatcgac ctggtgatcg ccagcgtact gatggcgtta
    10261 gggatgatga tggtgccgcc agcgacaatc gccctgccgt ttaagctgat gctgtttgtg
    10321 ctggtcgatg gttggcaatt gcttgtgggg tcgctggccc aaagctttta cagttagagg
    10381 cgcaaaatga ctcctgaatc cgtcatgatg atggggaccg aggcgatgaa agttgctctc
    10441 gccctggctg cgccgctgtt actcgtcgcg ctgattaccg gcctcattat cagcatcttg
    10501 caggccgcga ctcagattaa tgaaatgacg ctgtcgttta tccctaaaat cgtcgcggta
    10561 ttcatcgcaa ttatcgttgc cggcccgtgg atgctcaacc tgctgctgga ctacgtacgc
    10621 actctgttca gcaatttacc ttatatcatc ggataaacag aacgatgata caggttataa
    10681 gcgagcaatg gctatactgg ctgcatctct atttctggcc tttgctgcgc gtactggcgc
    10741 tgatttcaac ggcgcccatt ctcagcgagc gcgctattcc caagcgggta aaactggggt
    10801 tgggaataat gattaccctc gttatcgcgc cgtcgctacc agcaaacgat acgccgcttt
    10861 tttctattgc cgccttatgg ctggcgatgc aacaaattct gatcggtatt gcgctgggat
    10921 ttaccatgca attcgccttt gcggcggtgc gtaccgcagg tgagtttatc ggtctgcaaa
    10981 tggggctttc ctttgccacc ttcgtcgacc cgggcagcca cttgaatatg ccggttctgg
    11041 cgcgtattat ggatatgctc gccatgctac tgtttctcac ctttaatggc catttgtggc
    11101 ttatttcgct gctggtcgat accttccata ctctgcccat cggtagtaac ccggtgaaca
    11161 gtaatgcatt tatggcgctc gccagggccg gagggctcat tttcttaaac ggactgatgc
    11221 tggcattgcc ggtcattacc ctcctgctta cgctcaacct ggcgctgggg ctattaaacc
    11281 gcatggcgcc gcagctctcg atatttgtta tcggtttccc gcttaccctc accgtcggca
    11341 ttatgctgat ggccgcgcta atgccattaa ttgcgccgtt ttgcgaacat ttattcagcg
    11401 aaattttcaa tttgcttgct gatattgtta gcgagatgcc gataaataat
//
LOCUS       DAJVSD010000141        11403 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.141, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000141 DAJVSD010000000
VERSION     DAJVSD010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11403
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.141"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(94..1284)
                     /locus_tag="OQP62_002939"
     CDS             complement(94..1284)
                     /locus_tag="OQP62_002939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family multidrug efflux MFS
                     transporter"
                     /protein_id="HCS1722438.1"
                     /translation="MTTRQHSSFAIVFILGLLAMLMPLSIDMYLPALPVISAQFGVPA
                     GSAQMTLSTYILGFALGQLIYGPMADSLGRKPVILGGTLVFAAAAVACALAQTIDQLI
                     VMRFFHGLVAAAASVVINALMRDIYPKEEFSRMMSFVMLVTTIAPLMAPIVGGWVLVW
                     LSWHYIFWILAIAAILASVMIFALIKETLPVERRQPFHIRTTIGNFAALFRHKRVLSY
                     MLASGFSFAGMFSFLSAGPFVYIEINHVPPQDFGYYFALNIVFLFVMTIINSRFVRRV
                     GALNMFRAGLWIQFAMAVWMVFSALMGIGFWALVVGVAAFVGCVSMVSSNAMAVILDE
                     FPHMAGTASSLAGTFRFGIGAIVGALLSLATFNSAWPMIWSIALCAACSILFYLYASR
                     PKKR"
     gene            complement(1312..2007)
                     /gene="rsuA"
                     /locus_tag="OQP62_002940"
     CDS             complement(1312..2007)
                     /gene="rsuA"
                     /locus_tag="OQP62_002940"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase RsuA"
                     /protein_id="HCS1722439.1"
                     /translation="MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGDIIKNAAFKLLPE
                     HAVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAYKLHAAGRLD
                     IDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAAQFAKGVQLHNEKDL
                     TKPATLEVITPVQVRLTISEGRYHQVKRMFAAVGNRVVELHRERIGAITLDENLAPGE
                     YRPLTEEEIASVG"
     gene            2159..3919
                     /locus_tag="OQP62_002941"
     CDS             2159..3919
                     /locus_tag="OQP62_002941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HCS1722440.1"
                     /translation="MIFTLRPYQQEAVDATLSHFRRHRTPAVIVLPTGAGKSLVIAEL
                     ARVARGRVLVLAHVKELVAQNHAKYCALGLEADIFAAGLKRKESQGKVVFGSVQSVAR
                     NLDAFQEEFSLLIVDECHRIGDDEDSQYQQILTHLSKVNPHLRLLGLTATPFRLGKGW
                     IYQFHYHGMVRGNDNALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS
                     NGLFSEADLNRELKKQQRITPHIISQIMEFAQTRKGVMIFAATVEHAKEIVGLLPADD
                     AALITGDTPGPERDALIDNFKAQRFRYLVNVSVLTTGFDAPHVDLIAILRPTESVSLY
                     QQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGSPKGKSDNVPVQVFCPACGFANT
                     FWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE
                     CDAILVDPDDMLKAALRLKDALVLRCSGMTMQHGQDEKGEWLKITYYDEDGADVSERF
                     RLHTPAQRTAFEQLFIRPHTRTPGVPLRWITAADIVAQQALLRHPDFVVARMKGQYWQ
                     VREKVFDYEGRFRRAHELRG"
     gene            4044..4328
                     /gene="rplY"
                     /locus_tag="OQP62_002942"
     CDS             4044..4328
                     /gene="rplY"
                     /locus_tag="OQP62_002942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000494192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HCS1722441.1"
                     /translation="MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDH
                     DQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA"
     gene            complement(4437..5057)
                     /locus_tag="OQP62_002943"
     CDS             complement(4437..5057)
                     /locus_tag="OQP62_002943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722442.1"
                     /translation="MSKGIRQRPPVNFSLFRQVLYAHIVAFLMMLMLGMVFTVLSLVL
                     FYTYGANWLLSLFICPLFLLSGLFITGFAFKSTWSSIRYYYDKGQLKRYGLNLDATLT
                     HKEKVEIRIDNAKRQVRVDELELHVLFDFQFDSKTWSCGDLLTNEKVFDALNDGQTIP
                     IRILPWKPESASVRQRALFNRLKGMNTAAETTDPRLGEALIECGEV"
     gene            complement(5085..6092)
                     /gene="yejK"
                     /locus_tag="OQP62_002944"
     CDS             complement(5085..6092)
                     /gene="yejK"
                     /locus_tag="OQP62_002944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein YejK"
                     /protein_id="HCS1722443.1"
                     /translation="MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTTTVVEMVAELH
                     RVYSAKNKAYGLFNEESELAQALRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGI
                     VLFCHYRYLAVEYLLVTVLNNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETN
                     PQSTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAE
                     RQNVRQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEESFPADR
                     STLRQLTKYAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGG
                     K"
     gene            6272..6499
                     /locus_tag="OQP62_002945"
     CDS             6272..6499
                     /locus_tag="OQP62_002945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YejL family protein"
                     /protein_id="HCS1722444.1"
                     /translation="MPQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNL
                     INTSVAPAQRQAIANSFARALQSSISEDNAH"
     gene            6531..8291
                     /gene="pbgA"
                     /locus_tag="OQP62_002946"
     CDS             6531..8291
                     /gene="pbgA"
                     /locus_tag="OQP62_002946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin transport protein PbgA"
                     /protein_id="HCS1722445.1"
                     /translation="MVTHRQRYREKVSQMVSWGHWFALFNILLATLLGSRYLFVADWP
                     TTLAGRIYSYLSIVGHFSFLVFATYLLILFPLTFIVMSQRLMRFLSAILATAGMTLLL
                     IDSEVFTRFHLHLNPIVWELVINPDQNEMARDWQLMFISVPVILLIEMLFATWSWQKL
                     RSLTRRRHFARPLAAFFFVSFIASHLIYIWADANFYRPITMQRANLPLSYPMTARRFL
                     EKHGLLDAQEYQRRLVEQGNPEAVSVQYPLSNLHYRDMGTGQNVLLITVDGLNYSRFE
                     KQMPELATFAEQNIDFTRHMSSGNTTDNGIFGLFYGISPGYMDGVLSTRTPAALITAL
                     NQQGYQLGLFSSDGFASPLYRQALLSDFSMPAAQTQSDAQTASQWIDWLGRYAQEDNR
                     WFSWISFNGTNIDDSNQKNFVKRYASAASDVDAQINRVLNALREAGKFDNTVVIITAG
                     RGIPLTPEENRFDWSQGHLQVPLVIHWPGTPAQRINVLTDHTDVMTTLMQRLLHVSTP
                     ANEYSQGQDIFTVPRRHNWVTAADGSTLAITTPQMTLVLNNNGHYQTYDLHGEKIKDQ
                     KPQLSLLLQVLTEEKRFIAN"
     gene            8365..8441
                     /locus_tag="OQP62_002947"
     tRNA            8365..8441
                     /locus_tag="OQP62_002947"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8399..8401,aa:Pro,seq:ggg)
     gene            complement(8752..8974)
                     /locus_tag="OQP62_002948"
                     /pseudo
     CDS             complement(8752..8974)
                     /locus_tag="OQP62_002948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000457616.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4113 domain-containing protein"
     gene            complement(9062..>11403)
                     /gene="sspH2"
                     /locus_tag="OQP62_002949"
     CDS             complement(9062..>11403)
                     /gene="sspH2"
                     /locus_tag="OQP62_002949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SPI-2 type III secretion system effector E3
                     ubiquitin transferase SspH2"
                     /protein_id="HCS1722446.1"
                     /translation="LPATISNRRIYRIAWSDTPPEMSSWEKMKEFFCSTHQTEALECI
                     WTICHPPAGTTREDVINRFELLRTLAYAGWEESIHSGQHGENYFCILDEDSQEILSVT
                     LDDAGNYTVNCQGYSETHRLTLDTAQGEEGTGHAEGASGTFRTSFLPATTAPQTPAEY
                     DAVWSAWRRAAPAEESRGRAAAVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTL
                     VIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLC
                     KLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSG
                     LQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP
                     SELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE
                     RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRW
                     HMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALRANTFAMATE
                     ATSSCEDRVTFFLHQMKNVQLVHNAEKGQYDNDLAALVATGREMFRLGKLEQIAREKV
                     RTLALVDEIEVWLAYQNKLKKSLGLTSVTSEMRFFDVSGVTVTDLQDAELQVKAAEKS
                     EFREWILQWGPLHRVLERKAPKRVNALREKQISDYEETYRMLSDTELRPSGLVGNTDA
                     ERTIGARAMESAKKTFLDGLRPLVEEMLGSYLNVQWRRN"
BASE COUNT         2705 a         3200 c         2853 g         2645 t
ORIGIN      
        1 atgaaagccg tttggctttg ccatcgtgta gcggatagcg ccccccaacg ccgcctgcgc
       61 attcttcggc gccattgagg gacaccgcgc ccgtcaccgt tttttgggac ggctggcgta
      121 gagataaaac agaatggaac aggcggcgca aagcgcaatc gaccagatca tcggccacgc
      181 actgttaaag gtagccagcg acagcaacgc gccgacgata gcgccaatac caaagcggaa
      241 agtgcccgcc aacgaagacg ccgttccggc catatgcgga aactcatcca aaatgaccgc
      301 catcgcattg gacgaaacca tcgacacaca gccgacaaac gccgcaacgc caaccaccag
      361 cgcccagaat ccaatgccca tcagcgcgct gaaaaccatc cacaccgcca tcgcaaactg
      421 aatccatagc ccggcccgaa acatgtttag cgcccctacc cgtctgacaa aacggctgtt
      481 gataatcgtc atcacaaaca gaaatacgat gttcaacgcg aagtagtagc cgaaatcctg
      541 cggcggaaca tgattaattt cgatatagac aaacggcccc gcgctcaaaa aagagaacat
      601 accggcaaaa ctgaacccgc tcgccagcat atagctcagt acgcgtttgt ggcgaaacaa
      661 cgcggcaaag ttacctattg tggtacgaat atgaaaaggc tgacgccgct caacgggcag
      721 cgtctcttta atcaaagcaa agatcatgac tgacgccaga atcgccgcaa tagccagtat
      781 ccagaagata tagtgccagc ttaaccatac caacacccag ccgccaacaa tgggcgccat
      841 taacggcgct atcgtagtga ccagcatgac aaatgacatc atgcgcgaaa actcttcctt
      901 tggataaata tcccgcatca gcgcattgat gacgacgctt gccgccgcag ccaccaaacc
      961 gtgaaagaaa cgcatcacga tcagttgatc gatagtctgc gccaacgcac aggcgaccgc
     1021 cgcagcggca aataccagcg tcccgcccag gatgaccggc ttacgcccga ggctatccgc
     1081 catcggtcca tagataagct gacccagcgc aaaccccaga atataggtgc tgagcgtcat
     1141 ctgcgcgcta ccggcaggca cgccgaattg cgcagaaatc accggcagcg ctggaagata
     1201 catatcaatc gacagcggca ttaacatggc caacaggcca agaataaaga caatggcaaa
     1261 ggaagagtgc tgccgggtgg tcacatcgaa ctcctgaatt taacgagata gttagccgac
     1321 gctggcgatt tcttcttcag tcaacgggcg gtactcgccg ggagccagat tctcatccag
     1381 cgtaatggcg ccaatccgtt cgcggtgcag ttccacaacg cgattgccta ctgcggcaaa
     1441 catccgcttc acctgatgat aacggccttc gctgatggtc agacggacct gcacaggtgt
     1501 tatcacctcc agcgtagcgg gtttagtgag atctttttca ttatgcaact gcacgccttt
     1561 cgcaaattgc gctgccgtat cgtcggccac cggcgactcc agggtcacca gataggtttt
     1621 ttcacagtga tggcgcggcg acgtaatgcg gtgcgaccac tgaccgtcat ctgtcattaa
     1681 caccagaccg gtagtatcga tatccagacg tcctgcggca tgcagcttat acgccaccgg
     1741 ctcatccagg aaatacagca ccgttggatg atcgggatca tcggttgaac aaacgtatcc
     1801 ctgcggcttg ttaagcataa aatagcgtgg cccgtgttgc tgcgctaagg gattgccgtc
     1861 atacgcaacc gcatgttccg ggagcagttt gaaggccgca tttttaatga tgtcgccatc
     1921 gacggtaacg cggttaccac gaatttcacg cccggcaata gcgcggctga cgccaagctg
     1981 ctgagcgata aatttatcaa gtcgcatgtg tgtgatttag cctgtaataa tacggaaatc
     2041 gggcattcta cccgaaaaaa gggaattgct atccgctcag tatagcgggc taactatatc
     2101 cctcaaggga aatgattcat ggcatactat tcccggaacc gtttaacgta gtgagaccat
     2161 gatttttaca ctccgcccct accagcaaga agccgtagac gccacgctca gccactttcg
     2221 ccgccaccgt acgcccgccg tgattgttct gccgaccggc gcaggtaaaa gcctggtgat
     2281 cgccgaactg gcgcgcgtcg cccgcggacg ggtactggtg ctggcgcatg tgaaagagct
     2341 ggtcgcgcag aaccacgcca aatattgcgc gctggggctg gaagcggata ttttcgccgc
     2401 cggactcaaa cgtaaagaga gtcagggcaa agtcgtgttc ggcagcgtac agtcggtggc
     2461 gcgtaatctt gacgccttcc aggaggagtt ttcgctgttg attgtcgatg aatgccaccg
     2521 catcggtgac gatgaagaca gtcagtatca gcaaatcctc actcacctga gtaaagttaa
     2581 tcctcactta cgtctgcttg gactcaccgc cacgcctttt cgcctcggaa aaggctggat
     2641 ttatcaattt cattatcacg gtatggtgcg cggcaacgac aacgctctgt ttcgcgactg
     2701 tatttatgaa ctgccgctgc gctatatgat taaacacggc tatctgacgc cgcctgagcg
     2761 gcttgatatg ccagtggtcc aatacgattt cagccgcctg caggcccaaa gcaatgggct
     2821 gttcagcgaa gccgacctga accgcgagct gaaaaagcag cagcggatta cgccgcacat
     2881 catcagccag attatggaat ttgcgcaaac gcgcaaaggc gtgatgattt tcgccgccac
     2941 ggtcgaacat gcgaaagaga ttgtcggtct gcttccggcg gacgacgcgg cgctgattac
     3001 cggcgatacg ccagggcccg agcgcgacgc gctgattgat aatttcaagg cgcagcgttt
     3061 tcgctatctg gttaacgtct cggtactgac caccggcttt gacgccccac acgttgatct
     3121 catcgcgatt ctacgtccca cggagtcagt tagtctttac caacaaattg tcgggcgtgg
     3181 tctgcgcctt gcgccgggaa agaccgattg cctgattctt gattacgcag gcaacccgca
     3241 cgacctgtat gccccggagg tcggtagccc gaagggaaaa agcgataacg tccctgtcca
     3301 ggtattttgc ccggcctgcg gctttgccaa caccttctgg gggaaaacca ctgccgacgg
     3361 cacgctgatt gaacactttg gccgtcgctg ccagggctgg tttgaggatg acgacggcca
     3421 tcgcgagcag tgcgattttc gctttcgctt caaaaactgc ccgcagtgta atgccgaaaa
     3481 cgatattgcc gcccgacgct gccgggaatg tgacgccatt ctggtcgacc cggacgatat
     3541 gttaaaagcg gcgctcaggc tcaaggatgc gttagtcctg cgctgtagcg gaatgacgat
     3601 gcagcatggg caggatgaga aaggcgaatg gctgaaaatc acttactatg acgaggacgg
     3661 cgcggatgtc agtgagcgct tccgcttgca cacgcccgcc cagcgtaccg ctttcgaaca
     3721 gctatttatt cgcccgcata cgcgcacgcc cggcgttcct ttacgctgga tcacggcggc
     3781 ggatattgtc gcgcagcagg cgctgttgcg gcatcccgat tttgtggtcg cgcggatgaa
     3841 aggccagtac tggcaggtgc gtgaaaaagt gttcgactat gaaggccgct tccgccgggc
     3901 gcacgaatta cgtggttaat tgtacttttc attgatgtaa cggcgatttg agtatagaat
     3961 cccgcccgcc tttgcatacg caaagcagat cacttacctg ttgctgggtc gcctgtagca
     4021 ggaattatta aagagagatt taaatgttta ctatcaacgc agaagtacgt aaagagcagg
     4081 gtaagggtgc gagccgccgc ctgcgcgccg ctaacaagtt cccggcaatc atctacggcg
     4141 gttctgaagc cccgattgct atcgaactgg accacgacca ggtgatgaac atgcaagcta
     4201 aagctgaatt ctacagcgaa gttctgaccc tcgttgttga cggtaaagaa gtaaaagtta
     4261 aagctcaggc tgtacagcgt cacgcttaca aaccgaagct gactcacatc gacttcgttc
     4321 gcgcgtaatc gcctggaagt tgaagaaaaa ccccgccccg gcggggtttt tttatgcgtt
     4381 taattgaatt tgacgacatg cagagcaacg agaacccact ttgcttttct gctttcttac
     4441 acctcgccac attcaattag cgcctcccct aatcgaggat ctgtagtttc cgccgcggta
     4501 ttcatacctt taagccgatt gaataatgcc cgttgacgaa cgctggcact ttccggtttc
     4561 catggcaaaa ttcgtattgg tatcgtttgc ccatcattca acgcatcaaa taccttttca
     4621 ttggtcagta agtcgccgca gctccatgtc ttgctatcaa actgaaaatc aaataagaca
     4681 tggagttcca gttcatctac acgcacttga cgctttgcat tatcgatgcg tatttccacc
     4741 ttctctttat gcgtcaaagt tgcatcaaga ttgagtccat accgtttcaa ctgccccttg
     4801 tcgtaatagt aacgtatgct ggaccaggtt gatttaaaag caaatccagt aatgaataaa
     4861 ccacttaaca agaacagcgg gcatatgaac aagctcagta accagttggc gccataagta
     4921 taaaacagta ccaacgagag aacggtgaac accatgccga gcatcaacat catcaaaaat
     4981 gcgacaatgt gcgcatacaa aacctgccga aataaactga aattaacagg cggcctctga
     5041 cgtattcctt tactcactac ggcgtccttt tatgtcgtat gcctttattt cccgcccgac
     5101 gtgcgtcgct gcaactgatc gcgcaaattc ggcggcgtcc ctttgatagt cagggtatcg
     5161 gtcgccgggt cccagaaaat ccgctcgccc agtagcatcg catcaaagtt aatcgttaac
     5221 ccgccgccgc tgccggcata tttggttaac tggcgtagcg tactgcgatc tgccgggaag
     5281 ctctcttcca gctcatagcc tttttcggcg gtaaattcgc tgaagctgac ttcactgacg
     5341 ccggaaagct ctttagacag cgattccagc tcaatctctt ccccggcttg taactgctcg
     5401 ttgcagtagc tgtacacctg ctgacgcacg ttctgacgtt ctgctttatc caactgcgct
     5461 tctgcggtga aatcatccac tgcctgcaac aggccgcgat tctgcgcttt ggcgttcaac
     5521 ccttcgctgg cgccgaggaa atccataaag aagtcagcga ccttgcgccc tacccgacct
     5581 ttcaggaacg tcaggtagcg ggtcgattgc ggattagttt cccactcggt aagatcgata
     5641 cgcgccacga tatccgcatg gttgatatca agataatgcg tcgggttaat gtccagattt
     5701 tcattgaccc gcatactgct caggttgttc agtaccgtaa ccagcagata ctccaccgcc
     5761 aggtaacgat aatggcagaa caatacaatg ccgccgtccg caaagggata tttcgccagt
     5821 tcgtcacgca ggcgtccggt cgccgcccgg ctaaaggcaa gaaaatcttc ttccccctga
     5881 cgttgcaacc gcagcgcttg cgccagttca ctctcttcat taaacaggcc atacgcctta
     5941 ttcttggcgc tatagacccg atgcagttca gccaccatct cgacaacggt ggttgtcggc
     6001 tccagcaatg aatcgcgcaa gaccagctca agattttgct catcgcgctt gataagctgg
     6061 tgcagggcaa tctggttgat atccagactc atgataaact ctcctttaag accgggcggt
     6121 attcaaccac cgcctgccgg aagacgcaag caatcgccct gtcatttcag gcgttatccg
     6181 taacgcgaat gatttagggg ataaaaatgc agaaaaaaaa ctgttgctac ggtaatatgt
     6241 tgccctttca tgaacaaaca gattttgatt tatgccacaa ctctcccgct atagtgatga
     6301 acatgttgaa caactgctga gcgaactgct cagtgtactg gaaaaacata aggcgccgac
     6361 cgatctttcc ctgatggtac tgggaaatat ggtcaccaac cttatcaaca ccagcgtggc
     6421 gccggctcaa cgccaggcga ttgcgaactc ttttgcccgc gccttgcagt cttcgattag
     6481 cgaagacaac gcgcactaaa aagccgactc cggagaaaca agcgacaggt atggtaactc
     6541 atcgtcagcg ctaccgtgaa aaagtctccc agatggttag ctgggggcac tggttcgctc
     6601 tgttcaatat actgttggct acgttgctcg gcagccgtta cctgtttgtc gccgactggc
     6661 cgacaacgct tgcgggtcgc atatactcct acctgagcat tgtcgggcac tttagctttc
     6721 tggtgttcgc cacctatttg cttattcttt ttccgctcac gtttatcgtg atgtcccagc
     6781 ggctgatgcg gtttttatca gccattctgg cgaccgcggg tatgacgttg ttgcttatcg
     6841 acagcgaagt ctttacccgt tttcacctgc atcttaaccc cattgtctgg gaactggtca
     6901 tcaaccctga ccagaacgaa atggcgcgcg actggcagct tatgtttatt agcgtgccag
     6961 ttatcttatt gattgagatg ctatttgcga catggagttg gcaaaagctg cgcagtctca
     7021 cgcgccgccg ccatttcgca aggccgcttg cggcattctt tttcgtctcc tttatcgcat
     7081 cgcatcttat ctacatctgg gcagacgcta atttttaccg gccgattacc atgcagcggg
     7141 caaacctgcc gctctcttat ccgatgacgg cgcgacgttt tcttgaaaaa cacggtctgc
     7201 tggatgcgca ggaatatcag cgccgtctgg tagagcaagg caatccggaa gcggtctccg
     7261 ttcagtaccc gctcagcaat ttgcactatc gcgatatggg caccggtcag aatgtgctgc
     7321 tcattaccgt agacggcctg aactattctc gctttgagaa gcagatgccg gagctggcta
     7381 catttgccga gcaaaacatc gacttcaccc gtcatatgag ttcagggaat accactgata
     7441 acggtatttt cggcctgttc tatggcatat cgccaggcta tatggatggc gtgttatcca
     7501 ccagaacgcc tgcggcgctc attaccgcgt tgaatcagca aggctaccaa ctgggactgt
     7561 tttcttcgga tggcttcgcc agcccgcttt atcgtcaggc attactgtcc gatttctcga
     7621 tgccggcagc gcaaacgcag tctgatgcgc aaacggccag ccagtggata gactggcttg
     7681 ggcgctacgc acaggaagat aaccgctggt tctcatggat atcgtttaac ggtactaaca
     7741 ttgatgacag taaccagaaa aattttgtta agcgttacgc cagtgccgcc agcgacgtgg
     7801 atgcgcaaat caatcgggtt ctgaacgcgc tgcgagaggc cggtaaattc gacaatactg
     7861 tcgtgatcat taccgcagga cgcggcatac cgttgacgcc ggaagaaaat cgcttcgact
     7921 ggtcgcaagg tcatctgcaa gtaccgctgg tgatccactg gccggggacg cctgcgcagc
     7981 gtattaatgt gcttaccgat cataccgatg tgatgaccac gttgatgcaa cgcctgttac
     8041 atgtcagcac gccagcgaac gaatattcac agggccagga catctttacc gttccacgtc
     8101 gtcataactg ggtaacggcg gcagacggca gtacgctggc aatcacgacg ccgcaaatga
     8161 ccctggtgct caataataac ggtcattatc agacctatga cttacacggc gagaagatca
     8221 aagatcagaa gccgcagctc agtctgctgc tgcaagtgct aacagaagag aaacgtttta
     8281 tcgctaactg attaattata aatcagttag caccgtttcc ccttgcattc gcgttggaaa
     8341 gaggtagtat tagcacccac aagtcggcac gtagcgcagc ctggtagcgc accgtcatgg
     8401 ggtgtcgggg gtcggaggtt caaatcctct cgtgccgacc aaaattcccc ttaaaagcca
     8461 gcctgccagg gctggttttt ttatatatcc aatttgcaaa tggtgaaatg atggtgaaat
     8521 agctatcgaa ggtcactgca aattgacttc aagctccctc caacgcgaaa agttgaacag
     8581 atgacttaaa tacattgatt agtcatcctt aaccagtaga atccgccacg actggtaact
     8641 attcaataca cgcactatcg aacgatcgcc agtttgccgc agcccgttct tgcatacaat
     8701 gtggctgcgg cacaccatca catcagaaat ttgaaaatca gggtaaacct gtcacttaac
     8761 ctgaagcagg tcttcatagc gggtggtata tcgggatgac agtatgtttc tcttcatagc
     8821 ccactgttgc tggataccct ccccggcaaa gtacagcttt cccctgccct tctttgcatt
     8881 caggtgatcc agtacttcca tcggcttctc gctaccggcg cgcggcgcgt tatcatcgaa
     8941 aaagttgcgc cgcgccctga ctgaagaagt ctcccctatt tcacctgtac atcatccgta
     9001 ctgtctgatg ttgttcgtcc gggaatatct ttgtcgcacc gcacctcatt cacctggtgc
     9061 atcagttacg acgccactga acgttcagat agctccccag catctcctcc acaagaggtc
     9121 gcaggccatc caaaaatgtc tttttcgcgc tctccatcgc tcttgctccg atagtgcgct
     9181 ctgcatcggt attaccgacc agcccagacg gtctcagctc tgtgtcagac agcatccggt
     9241 acgtttcctc ataatccgat atttgctttt cacgaagcgc gttaacgcgt ttcggcgctt
     9301 tgcgctccag cactctgtgt aacggccccc actgcagtat ccactccctg aactcgcttt
     9361 tttcagcggc tttcacctga agctccgcgt cctgaaggtc tgtaaccgtc acgccggata
     9421 cgtcaaagaa acgcatttct gacgtcacgc tggtcagccc gagtgatttc ttcagcttat
     9481 tctgatacgc cagccagacc tcaatttcat caacgagagc cagcgttctg accttttccc
     9541 gggcaatctg ttccagtttt cccagacgga acatctcacg ccccgtggca accagcgccg
     9601 cgagatcgtt atcgtattgc cctttttctg cattatgtac cagctgtacg ttcttcatct
     9661 ggtgcaaaaa aaatgtgacc cggtcctcgc agcttgaggt tgcctctgtt gccatagcaa
     9721 aggtgtttgc tctcaacgcc tcatcttcag ccagttgtgc cagccaggac gatatctgtg
     9781 ccttaaaccc cgcgtccttt atgaagtttt ccgtctcact cagtctgtcc aggaagaggc
     9841 tgaaggcgtc ggcgttatct tcctgtccga acatatgcca tctgtctgca ggagccggtt
     9901 ccccctcccg ggcaggcacc agccagtcag cggccgccag gtgcagtgcc cgagtttccc
     9961 ggggggcgga ggctcccgcc atatcgaatc gtattatggg gcctgaatag ccaggcgcgc
    10021 tggtgatctc ccgcagcgcc tgcaaagtac gttcagacag tgggttccct tccagattta
    10081 cggttgtctc tgaagacaga tgaatgagac tttccggcag gcgggtcagc tggttacgat
    10141 agaccgacag cgacagtagt cctgacggca gcatcggcag gctggtcagc cggttaccag
    10201 ataccatcag ctccttcagt tctgacggca gcaccggcag actggtcagc cggttaccag
    10261 atacaatcag ctccttcagt cctgacggca acgccggcag gctggtcagc cgattattat
    10321 aggcccacag cttatataat tctgacggca gcgtcggcaa gctggccagt tggttatcag
    10381 ataccgacag ctcctgtagc cctgacggca acgtcggcag gctggtcagc tggttattat
    10441 aggcccacag cttacataat tctgacggca gcgccggcag gctggccagt tggttatcag
    10501 ataccgacag ctcctgtagc cctggcggca acaccggcag gctggtcagt tgattaccaa
    10561 agatccacag cttacatagt cctgacggca gcgccggcag gtgggtcagc gggttactaa
    10621 agatcgacag ttccagtagt cctggcggca gcaccggcag gctagtcagc tggttaccag
    10681 agacctccag cgtccgcagt tctggcggca gcgccggcag gctggtcaga ttattatcag
    10741 gaataaccag tgtggtaata tgcgcgggta aacagtctgg caaggtggta agacctgatt
    10801 ctcccacgtt aagcactgca ttgccattat tcaggcaggc acgcattttc tgtaccgctg
    10861 ctgcacggcc gcgtgactct tctgcgggtg cagcccttct ccacgctgac cagacagcat
    10921 catactctgc tggcgtctgt ggagccgttg tggcagggag gaaggatgtc ctgaatgtcc
    10981 cggatgcccc ttccgcgtgt cctgtgccct cctcaccctg tgctgtgtcc agggtgaggc
    11041 gatgtgtttc actgtacccc tggcaattta cggtatagtt cccggcatca tcaagggtga
    11101 ctgacaatat ctcctgactg tcttcatcca gaatacagaa gtaattttcc ccgtgctggc
    11161 cggaatgaat gctttcctcc catccggcat acgcgagcgt cctgagcagt tcaaatctgt
    11221 tgatcacatc ctcccgcgtc gttccggccg gcgggtgaca aatcgtccag atgcactcca
    11281 gcgcttcagt ctggtgcgtt gagcaaaaaa attccttcat tttttcccag gaactcattt
    11341 cagggggggt atcagaccag gcaatacgat aaatgcggcg attactgatg gtggcgggaa
    11401 gac
//
LOCUS       DAJVSD010000142        11322 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.142, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000142 DAJVSD010000000
VERSION     DAJVSD010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11322
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.142"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            97..1341
                     /gene="sstT"
                     /locus_tag="OQP62_002950"
     CDS             97..1341
                     /gene="sstT"
                     /locus_tag="OQP62_002950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HCS1722447.1"
                     /translation="MATQRASGLLQRLAQGSLVKQILVGLVLGILLAWISKPVAEAVG
                     LLGTLFVGALKAVAPVLVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVF
                     SFAFPSTLHLSSSAQDIVPPSGIVEVLRGLLMSMVSNPIDALLNANYIGILVWAVGLG
                     FALRHGNETTKNLVNDMSNAVTFMVKLVIRFAPVGIFGLVSSTLATTGFSTLWGYAHL
                     LVVLIGCMLLVALVVNPLLVFWKIRRNPYPLVFACLRESGVYAFFTRSSAANIPVNMA
                     LCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVHTLGVPVDLPTALLLSVVA
                     SLCACGASGVAGGSLLLIPLACNMFGIPNDIAMQVVAVGFIIGVLQDSCETALNSSTD
                     VLFTAAACQAEDERLANNALRS"
     gene            1791..2453
                     /locus_tag="OQP62_002951"
     CDS             1791..2453
                     /locus_tag="OQP62_002951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1722448.1"
                     /translation="MELLTQLLNALWAQDFETLANPSMIGMLYFVLFMILFLENGLLP
                     AAFLPGDSLLILVGVLIAKGAMGFPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNW
                     LSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGISGLNNARFQFFNWMS
                     GLLWVLILTSLGYLLGKTPVFMKYEDQLMSCLMLLPVVLLFFGLAGSLVMLWKKKYGS
                     RG"
     gene            2457..2840
                     /gene="mzrA"
                     /locus_tag="OQP62_002952"
     CDS             2457..2840
                     /gene="mzrA"
                     /locus_tag="OQP62_002952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EnvZ/OmpR regulon moderator MzrA"
                     /protein_id="HCS1722449.1"
                     /translation="MLKPRITARQLIWISAFLLMLTILMMTWSTLRQQESTLAIRAVN
                     QGASMPDGFSVLHHLDANGIHFKSITPKNDMLLITFDSPAQSAAAKTVLDQTLPHGYV
                     VAQQDDDNETVQWLSRLRESSHRFG"
     gene            2985..3353
                     /locus_tag="OQP62_002953"
     CDS             2985..3353
                     /locus_tag="OQP62_002953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 domain-containing protein"
                     /protein_id="HCS1722450.1"
                     /translation="MKYRIALAITLFTLSAGSYANSLCQEKEQDIQKEISYAEKHNNQ
                     RRIEGLNKALSEVRANCTDSKLRAEHQKKIAEQKEEVAERQRDLAEAKAKGDADKIDK
                     RERKLAEAQDELKKLEARDY"
     gene            3395..3700
                     /locus_tag="OQP62_002954"
     CDS             3395..3700
                     /locus_tag="OQP62_002954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HCS1722451.1"
                     /translation="MSKDNTTEHLRAELKSLTDTLEEVLSSSGEKSKEELSKIRSKAE
                     RALKESRYRLGETGDVIAKQTRVAAARADDYVRENPWTGVGIGAAVGLVLGVLLTRR"
     gene            3703..4101
                     /locus_tag="OQP62_002955"
     CDS             3703..4101
                     /locus_tag="OQP62_002955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HCS1722452.1"
                     /translation="MADSRQAQGPGKSVLGIGQRIVTIIVEMVETRLRLAVVELEEEK
                     ANLFQLLLMVGLTMLFAAFGLMSLMVLVIWAIDPQYRLNAMIATTVVLLVLALIGGIW
                     TLRKARQSTLLRHTRHELANDRQILEDDQS"
     gene            4098..4397
                     /locus_tag="OQP62_002956"
     CDS             4098..4397
                     /locus_tag="OQP62_002956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqjK-like family protein"
                     /protein_id="HCS1722453.1"
                     /translation="MSSKGEREKRKALLLSQIQQQRLDLSASRRDWLETTGAYDRGWN
                     TVLSLRSWALVGSSVMAIWTIRHPNMLVRWAKRGLGIWSAWRLVKTTLRQQQLRG"
     gene            4645..5037
                     /locus_tag="OQP62_002957"
     CDS             4645..5037
                     /locus_tag="OQP62_002957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008503138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HCS1722454.1"
                     /translation="MKKLEDIGVLIARILMPVLFITAGWGKISGYAGTQQYMEAMGVP
                     GFLLPLTILLEFGGGLAILLGFLTRTTALFTAGFTLLTALIFHSNFAEGVNSLMFMKN
                     LTIAGGFLLLALTGPGAFSLDRLLNKKW"
     gene            5105..6091
                     /locus_tag="OQP62_002958"
     CDS             5105..6091
                     /locus_tag="OQP62_002958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HCS1722455.1"
                     /translation="MGQLIDGVWHDTWYDTKSSGGKFQRSASAFRNWLTADGAPGPSG
                     EGGFAAEKDRYHLYVSLACPWAHRTLIFRKLKGLEPFIPVSVVNPLMLENGWTFDDTF
                     PAATGDTLYQHEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNSAF
                     DGLGAKAGDYYPPALQSKIDELNGWIYDNVNNGVYKAGFATSQQAYDEAVEKVFTALA
                     RLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKYRISDYLNLYGFLRD
                     IYQIPGIAETVNMDHIRHHYFRSHKTINPTGIISVGPWQDLLEPHGHDVRFG"
     gene            6215..6580
                     /locus_tag="OQP62_002959"
     CDS             6215..6580
                     /locus_tag="OQP62_002959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HCS1722456.1"
                     /translation="MDWYLKVLKNYLGFGGRARRKEYWMFILVNIIFTFVLGLLDAML
                     GWQRAGGEGVLTTIYGVLIFLPWWAVQFRRLHDTDRSAWWLLLLLIPIIGWLIIIAFN
                     CQNGTPGDNRFGPDPKRFS"
     gene            complement(6619..7515)
                     /gene="yhaJ"
                     /locus_tag="OQP62_002960"
     CDS             complement(6619..7515)
                     /gene="yhaJ"
                     /locus_tag="OQP62_002960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator YhaJ"
                     /protein_id="HCS1722457.1"
                     /translation="MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQK
                     LEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTLV
                     TEALVPTPAFFPLIDRLAAKANTQLSLITEVLAGAWERLEQGRADIVIAPDMHFRSSS
                     EINSRKLYTLMNVYVAAPDHSIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLD
                     KQPRLTVSTIEDKRQALLAGLGVATMPYSMVEQDIAEGRLRVVSPESTSEIDIIMAWR
                     RDSMGEAKAWCLREIPKLFAGK"
     gene            7620..8321
                     /locus_tag="OQP62_002961"
     CDS             7620..8321
                     /locus_tag="OQP62_002961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HCS1722458.1"
                     /translation="MITTRTAKQCGQADYGWLQARYTFSFGHYFDPTLLGYASLRVLN
                     QEVLAPGASFQPRTYPKVDILNLILDGEAEYRDSDGNHVQAKAGEALLLAAQPGISYS
                     EHNLSKVKPLTRMQLWLDACPERENALVQKIPLSTAQQQLLASPDGEQNSLQLRQQVW
                     VHHITLEKGESLNFQLHGPRAYLQSIHGTFHAMTHNEEREALTCGDGAFIRDEPNITL
                     VADTPLRALLVDLPV"
     gene            8345..8509
                     /locus_tag="OQP62_002962"
     CDS             8345..8509
                     /locus_tag="OQP62_002962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722459.1"
                     /translation="MSKKSAKKRQPVVKPAVQEAMSAAVPLGYEEMLTELEAIVADAE
                     ARLAEEEAAA"
     gene            complement(8622..9932)
                     /locus_tag="OQP62_002963"
     CDS             complement(8622..9932)
                     /locus_tag="OQP62_002963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase subunit alpha family protein"
                     /protein_id="HCS1722460.1"
                     /translation="MFESKINPLWQSFILAVQEEVKPALGCTEPISLALAAAAAAAEL
                     DGTVERIDAWVSPNLMKNGMGVTVPGTGMVGLPIAAALGALGGDAKAGLEVLKDASAK
                     AVADAKAMLAAGHVAVMLQEPCNDILFSRAKVYSGDSWACVTIVGDHTNIVRIETDKG
                     VVFTQADNAQEEEKTSPLGVLSHTSLEEILAFVNAVPFDAIRFILDAARLNGALSQEG
                     LRGSWGLHIGSTLAKQCDRGLLAKDLSTAILIRTSAASDARMGGATLPAMSNSGSGNQ
                     GITATVPVMVVAEHVGADDECLARALMLSHLSAIYIHHQLPRLSALCAATTAAMGAAA
                     GMAWLIDGRYDTIAMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDT
                     AVTGNEGIVAHNVEQSISNLCSLACRSMQQTDKQIIEIMASKAH"
     gene            complement(9958..10910)
                     /locus_tag="OQP62_002964"
                     /pseudo
     CDS             complement(9958..10910)
                     /locus_tag="OQP62_002964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004985932.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation protein"
     gene            complement(11010..11288)
                     /locus_tag="OQP62_002965"
                     /pseudo
     CDS             complement(11010..11288)
                     /locus_tag="OQP62_002965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004985905.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         2715 a         3075 c         2886 g         2646 t
ORIGIN      
        1 cttatactca accaggcaaa cactttgtta catcctgaaa gatgcgccgt aagagcgtgc
       61 aggggatgac cagcaacaca atacaaggaa tatgaaatgg ctacgcaacg agcatcaggg
      121 ctactgcagc gtttagcgca aggcagtctg gttaaacaaa ttttagtggg tctggtactg
      181 gggattttac tggcatggat ttctaagcct gtggcagaag cggttggctt gcttggcacc
      241 ctgttcgtcg gcgccttaaa agcggtcgcc cccgttctgg tgctgatgct ggtaatggcc
      301 tcgatcgcca accaccagca cggccaaaaa accaatattc gccctattct ctttctttac
      361 ctgctaggca ccttttcagc cgcgctggcg gccgttgtgt tcagcttcgc cttcccttca
      421 acgctgcatc tgtccagtag cgcccaggat atcgtgccgc cgtccggcat tgtagaagtc
      481 ctgcgcggtc tgctgatgag catggtgtcg aaccccatcg acgcactgct gaacgctaac
      541 tatatcggga ttctggtgtg ggccgtcggt ctgggatttg ccctgcgtca tggcaatgaa
      601 accaccaaaa acctcgtgaa cgatatgtct aacgccgtga cctttatggt gaaactggtg
      661 atccgtttcg cgccagtcgg tatttttggt ctggtttcat caacgcttgc aaccaccggc
      721 ttctccaccc tgtggggcta tgcgcacctg ctggtcgtct tgattggctg tatgctgctg
      781 gtcgcgctgg tggtcaaccc gctgttggta ttctggaaaa ttcgtcgcaa cccttatccg
      841 ctggtgttcg cctgcctgcg tgaaagcggt gtttatgcct tctttacccg cagttctgcc
      901 gccaatattc cagtgaatat ggcgctgtgc gaaaaactga atctggacag ggatacttac
      961 tccgtttcca ttccgctggg tgccactatc aatatggccg gcgcggcaat taccattacg
     1021 gttctgacgt tggcggcagt tcatacgtta ggcgtcccgg tggatctgcc tacagcgctg
     1081 ctgctgagcg tggtggcctc gctgtgtgct tgcggcgcct ccggcgtggc aggcggttca
     1141 ttgctgctga tcccgctggc gtgcaacatg tttggcatcc cgaacgatat cgcgatgcag
     1201 gtagtagcgg tcggctttat tatcggagta ttgcaggatt cgtgtgaaac ggcgctgaac
     1261 tcatctaccg atgttctgtt cactgcggca gcctgccagg cagaggacga acgtctggcg
     1321 aataacgcct tgcgtagcta agtgattatc aatgccggat ggcgcgtgcc atccggcgtg
     1381 acgataaatc agaatctccc aatccatagg ctgtgacgga aagcgaattg atgttcacgc
     1441 gcgacatcct cgcgtaacgt tatatgtaga tggcgtctgc cgcagcgctc ggtcagcgta
     1501 aagtataaag tgtcagcctg tgtaaatcct ctcgccaccc tcctttgcga taagcaaaat
     1561 caaagctcaa cgacgcgtaa tttctataac ggacttcgtt gacctttgtt acaattagat
     1621 gcattttgaa tttttgtgtg ttagtgcttg cttacttcac aacttaacaa ggaatagttc
     1681 aggccgcgaa tttgccgttt ccgcaacgct gataaaaact ccaactctgt tgcggcagtg
     1741 caaacctcag atcaccggcg tgacgttaac cgattctcca ggaatactga atggaactac
     1801 tgactcaatt gctgaatgcc ctgtgggctc aggactttga aacactggcc aatccttcca
     1861 tgattggcat gttatatttt gtgttattta tgattttgtt tctggaaaat gggctgctcc
     1921 ctgccgcctt tttgcctggc gacagcctgt tgatactggt cggcgtgctg atcgccaaag
     1981 gcgcgatggg ttttccacaa accattttgc tgcttaccgt cgcggccagc ctgggttgct
     2041 gggtcagcta tatacagggc cgctggctgg ggaatacccg caccgtgcag aattggctct
     2101 ctcatctccc cgcacattat catcaacgcg cccatcacct tttccataaa cacggcctgt
     2161 cggcattatt gataggccgt tttatcgcgt ttgtcagaac gctgctaccc accattgccg
     2221 gcatatccgg cctgaataac gcgcgctttc agtttttcaa ctggatgagt ggcttgttgt
     2281 gggtgcttat cctgacgtcg ctgggctatc tgctgggcaa aacgcccgtc tttatgaagt
     2341 atgaagatca gctaatgtca tgcctgatgc tgctgcccgt ggtgctgctc ttttttggcc
     2401 tggcgggttc actggtcatg ctgtggaaaa agaagtatgg gagccgggga taacttatgc
     2461 ttaaaccacg cataactgcc cgacaactca tttggatcag cgcttttctg ctgatgctga
     2521 ccatactcat gatgacgtgg tcaacgctgc gtcagcaaga gtcgacgctg gccattcgcg
     2581 cggttaatca gggcgccagt atgccagacg gcttctcagt tctgcatcat ctggatgcga
     2641 acggcattca ttttaaaagc attacgccta aaaatgacat gttgctcatt accttcgatt
     2701 cccctgcgca aagcgccgca gcaaaaacag tgcttgatca aacgttacca cacggttatg
     2761 tcgtcgctca gcaggacgat gacaacgaaa cggtacagtg gttgtcccgc ttacgggaaa
     2821 gctcacaccg ctttggctaa tctccaggaa tccgaatcat atcactcact ttggtgattt
     2881 cattgtttaa tgactatgat taataaagcg gtgcttaacc caccgcgtta ttatcgggat
     2941 caccgccccg gacaacgggt ccgaacataa gggaaagttc aggaatgaaa taccgcatcg
     3001 ctttggctat cacgcttttt acgcttagcg ccggcagcta cgctaattcg ctttgtcagg
     3061 aaaaagagca ggatatacaa aaggaaatta gctacgctga aaagcacaac aatcagcgcc
     3121 gtattgaggg tctgaacaag gcgctcagcg aagtacgcgc caattgtact gacagcaagc
     3181 tgcgcgccga gcatcagaaa aagatcgctg agcaaaaaga agaggtagcc gaacgccaac
     3241 gtgatttagc cgaggcaaaa gcaaaaggcg atgcggataa aatagacaaa cgtgaacgta
     3301 agctggccga ggctcaggat gagctaaaaa aacttgaggc cagagactac taaattaacg
     3361 ccgaatgtaa atactcactc acctggagaa aactatgtcg aaagataaca ctacggaaca
     3421 tctgcgcgct gagttgaaat ccctgaccga tacgctcgaa gaagtgctga gctcttcggg
     3481 cgaaaagtcg aaagaagagt tgagtaagat tcgtagcaaa gccgagcgcg cgctgaaaga
     3541 gagccgttac cgcctgggcg aaacgggtga tgtgattgcc aaacagactc gcgtcgccgc
     3601 cgcccgtgcc gatgattatg tgcgcgaaaa cccctggaca ggcgtaggca ttggcgccgc
     3661 tgtcggtctg gtgttgggcg tactgctgac gcgtcgttaa ttatggcgga ctctcgacag
     3721 gcacaaggac caggcaaaag cgtactgggt atcgggcagc ggattgtcac cattatcgtt
     3781 gagatggtgg aaacccggct gcgactggcg gtagtagaac tggaagaaga gaaagcgaac
     3841 ctctttcagc ttttgctgat ggtaggtctt accatgctct tcgcggcgtt tggcttaatg
     3901 agcctgatgg ttctggtcat ctgggctatc gatcctcagt accgtttgaa cgcgatgatc
     3961 gctaccacag ttgtactgtt agtgcttgcg ctaatcggcg gcatctggac tttgcgcaaa
     4021 gcgcgtcagt ccacgctatt gcgccatacg cggcacgaac tggctaacga tcggcaaatt
     4081 ctggaggacg atcagtcgtg agcagcaaag gcgaacgcga aaaacgtaaa gcgctgcttc
     4141 tcagtcagat ccagcagcaa cggctggatc tgtccgccag ccgtcgcgac tggctggaga
     4201 ccaccggcgc gtacgatcgc ggctggaata cggtgttaag cctgcgctcc tgggcgctgg
     4261 tcggtagcag cgtaatggcc atctggacca tccgtcatcc taatatgttg gtacgctggg
     4321 cgaaacgcgg cctgggtatc tggagcgcct ggcgcctggt aaaaactacc ctccgtcaac
     4381 aacagctccg cggttaatat cttttctttt atagcatcgc gccatcaggt tatcacccga
     4441 ttacacctgg tggcgcgata cttttatgca tatcgtctct ttatcaatca ctcaaatttt
     4501 ttgaaaaaat ttggcaattt tccttgctaa caattcctgt acgccacgtt tatgattctc
     4561 tccagcgata acaatgacgc gctaaaccgc gccattgctc atgaaaatag cagcagccgc
     4621 cgaatcggcc tcctggagaa taaaatgaaa aaattagaag atattggtgt actgatagcg
     4681 cgtattttaa tgccagttct gtttattacc gcaggatggg gaaaaattag cggctatgcg
     4741 ggcacacagc agtatatgga agcgatgggc gtaccaggat tcctgctgcc gctcaccata
     4801 ctgcttgagt tcggcggcgg tctggcgatt ctgctggggt tcctcacccg caccactgcg
     4861 cttttcaccg ctggttttac gttgctgacg gcattgatct tccatagcaa ttttgcagaa
     4921 ggtgtaaact cgctgatgtt tatgaaaaac ctgaccattg ccggaggatt cttattactg
     4981 gcgttaaccg ggcctggcgc gttcagcctt gaccgtctgc tgaataaaaa gtggtaagca
     5041 atctatactc aattaaaaaa gcgagggaat agcgcctcgc ttttgttatc tgaaggagag
     5101 agacatggga caactgatcg atggcgtctg gcacgatacc tggtatgaca ccaaatcttc
     5161 cggggggaaa tttcagcgtt cagcgtcggc tttccgcaac tggcttaccg ctgacggcgc
     5221 gcccggacct tccggcgaag gcggattcgc cgcagaaaaa gatcgttacc atctgtacgt
     5281 ttcccttgcc tgcccctggg cgcatcgcac gctcattttc cgtaaactga aaggtctgga
     5341 gccgtttatt ccggtttctg tcgtgaatcc attgatgctg gaaaacggct ggacgtttga
     5401 tgatactttt ccggcggcca ccggcgatac cctctatcag catgaatttc tctaccagtt
     5461 gtatctgcac gccgatccac actacagcgg ccgcgtcacc gtgccggtct tatgggataa
     5521 aaaaaatcat actatcgtca gcaacgagtc cgccgaaatc attcgtatgt ttaactccgc
     5581 tttcgatggg ctgggcgcta aagccgggga ttactatccc cccgcgctgc aaagcaaaat
     5641 tgacgagtta aacggctgga tttatgacaa cgttaataac ggcgtttata aagcaggctt
     5701 cgccactagc cagcaagcgt atgatgaagc ggtagaaaag gtgtttactg cgctggcgcg
     5761 cctggaacag attctcggac agcaccgcta tctgacgggc aaccagttga ccgaggcgga
     5821 tatccgctta tggacgaccc tggtacgctt tgatccggtt tacgtgactc atttcaaatg
     5881 cgacaaatac cgaatcagcg actacctgaa tctgtacggt ttcctgcgcg atatctatca
     5941 aataccgggc attgctgaaa ccgtcaatat ggaccatatt cgtcaccact atttccgtag
     6001 ccataaaacg attaacccca cgggtatcat ttctgtcgga ccgtggcagg atctgctcga
     6061 acctcacggg cacgacgtgc gctttggcta atttcaggcg tcctccggga cgccttatta
     6121 ataaatgcca caaatattta ccagcatttc attcgcagct attcttagtt tgattacttt
     6181 aaaaacaagt gattgaacca ttattgaggc gaaaatggat tggtatttaa aggttttaaa
     6241 aaattatctg ggatttggcg gccgcgcgcg acgcaaagag tactggatgt ttattctggt
     6301 caatatcatc tttacctttg tgttgggcct gctggacgcc atgcttggct ggcaacgcgc
     6361 cgggggtgaa ggcgttctga ccaccattta cggcgttctg atctttttac cgtggtgggc
     6421 cgtgcagttc cgtcgtctgc atgacactga ccgctccgca tggtggctac tgttgctact
     6481 tatccccatt atcggctggc ttatcatcat cgcgttcaac tgccagaatg gtacaccggg
     6541 cgacaaccgc ttcggccccg atccgaaacg tttttcctga gggcggcgcg gcgccgcttt
     6601 taaagcgccg cgcgctattt attttccggc gaatagctta ggtatttccc gcaggcacca
     6661 ggcttttgcc tcccccatac tgtcgcgccg ccaggccata ataatatcga tttcgctggt
     6721 cgattccggg ctgactacgc gtagccgccc ttcggcaata tcctgttcca ccatcgaata
     6781 tggcatcgtc gcgacgccaa gcccggccag cagcgcctga cgtttatctt caatcgtgct
     6841 taccgtcaga cgtggctgct tatccagcag ttgcaccgtt aataccggcc gctcgcgcgc
     6901 ggtatccgct accgctacgc cgcggtattt aacccgcgtc acttccgaaa gcggctccgg
     6961 ctcctgatga atagagtggt caggcgcggc gacatacaca ttcattaacg tatacaactt
     7021 acgggagtta atttccgacg acgatcgaaa atgcatatcc ggggcgataa cgatatccgc
     7081 ccgtccctgc tcaagccgct cccatgcgcc agccagtact tcggtaatca atgaaagctg
     7141 cgtattggct ttagcggcca gccggtcgat cagcggaaaa aaagcaggcg tcggtaccag
     7201 agcttcagtg accagcgtca gatgcgtttc ccaaccgcgg gccaacgctt cagcatccgt
     7261 cgttaacttg tctgccgctt ccagcaatac ccgcccgcgt tccagcagca tacgtccgac
     7321 gttggtgaat tttgtacgat ggccggagcg atcgaacagt acaacgtcca actcttcttc
     7381 cagcttctgc atggtgtaac tcagcgcgga gggcacccgc cccaactcat cagccgctgc
     7441 ggcaaaactg ccccggcggt caatggcgtc catcacacgc aatgcttcaa gcgtcagcgc
     7501 tctctcttta gccataacgt tctcattcag gaaatttgaa cataccgggc agaatatctg
     7561 gctaacaatg cagcgtccag ccccttaaca taaaaggaag taaagagagg ttaataacga
     7621 tgattacgac ccgaaccgcc aaacaatgtg gacaggcaga ctacggatgg ctacaggccc
     7681 gctatacctt ctcctttgga cactacttcg accctacact gctgggctac gcgtcgttgc
     7741 gcgtactgaa ccaggaagtg ctggcgccgg gcgcctcttt tcagcctcga acttatccaa
     7801 aggtggatat tttaaacctg attctggacg gcgaagcgga ataccgcgac agcgacggca
     7861 accatgtaca ggctaaagcg ggcgaagcgt tgctgctcgc cgcgcagccg ggcattagct
     7921 acagcgaaca taatctcagc aaagttaagc cgttaacccg aatgcaactg tggcttgacg
     7981 cctgtcctga acgggaaaac gcgctggtac aaaaaatccc actctcgacg gcgcaacaac
     8041 agcttcttgc ctcgcccgac ggtgagcaaa acagcttaca actgcgccaa caggtctggg
     8101 tacatcatat tacgctggag aaaggcgaat cgcttaactt ccagcttcac gggccgcgcg
     8161 cctatttgca gtcgattcac ggtacgttcc acgcgatgac gcacaacgaa gaacgcgagg
     8221 cgttaacctg cggagatggc gcatttattc gtgatgaacc taacattacg ctggttgccg
     8281 atacgccgct gcgcgcatta ctggtagatt taccggtgta gccagccaga aaaggagtcg
     8341 caagatgagc aaaaaatcgg cgaagaaacg tcagcccgtg gtaaaacctg ccgtacagga
     8401 ggcgatgagc gccgctgtgc cgctgggcta tgaagagatg ctaaccgaac tggaagccat
     8461 cgtggcggac gccgaagccc ggctggcaga agaagaggcc gcagcctgaa atcatgccgg
     8521 atggcggcgc aagcgcccga tccggctgat aacgggtaga cccgataagc gcagcgccat
     8581 cgggcaacac gctgccccga cgtcatgccg gggcgttatt attaatgcgc tttactggcc
     8641 ataatctcga tgatctgctt gtctgtctgc tgcattgagc gacacgccag cgaacacaaa
     8701 ttcgaaatag attgttcgac attgtgcgcc acaatccctt cgtttccggt caccgccgta
     8761 tcatccaacg ccatcagtac ggctttccac gccgccgacg cgctggtaga gactttcatc
     8821 gcgcagctat tcgacgcgcc atcgcaaatc atcccgctga catcaccaat catactgctg
     8881 atagccattg cgatagtgtc gtaacgacca tctatcagcc acgccatacc cgctgccgcg
     8941 cccattgccg ccgtagttgc cgcgcacagc gccgacaaac gcggaagctg atggtgaata
     9001 tagatagcgc tcaaatgcga taacattagc gcgcgcgcca ggcactcgtc atcggcgccg
     9061 acatgttcag caaccaccat gactggcacc gtggcggtaa tcccctggtt gccggagccg
     9121 gagttgctca tcgcgggcaa cgtggcaccg cccattctgg cgtctgacgc cgcgctggta
     9181 cggatcaaaa tcgccgtgga gagatctttc gccagcagac cgcgatcgca ctgtttggcc
     9241 agcgtcgaac caatatgcag cccccaggaa ccacgcaagc cctcctgcga caacgcgccg
     9301 tttagcctgg ccgcatcgag aataaagcgg atagcgtcaa agggcaccgc attcacaaac
     9361 gccaggatct cttccagcga ggtatgagac agcactccca gtggcgaggt tttttcttct
     9421 tcctgcgcat tatcggcttg ggtaaatacc acgcccttgt cggtttctat ccgcacaata
     9481 tttgtatgat cgccgacgat cgtgacacat gcccagctat cgccgctata cactttcgcc
     9541 cgtgaaaaca ggatatcgtt acatggctcc tgcaacatca ctgcaacatg tccggcggcc
     9601 agcatcgctt ttgcatcggc aacggcttta gcggaagcgt cttttaacac ctccaacccg
     9661 gctttcgcat caccgcccaa cgcgccaagc gccgcggcga tcggtagccc taccattccc
     9721 gttcctggaa cggtaacgcc cataccattt ttcatcagat taggcgaaac ccacgcgtca
     9781 atgcgttcaa ctgtgccgtc aagttcagcc gccgccgccg ctgctgccag cgccagtgaa
     9841 attggctcag tacaccccag cgccggtttt acttcttcct gtacggccag gataaaactt
     9901 tgccacaatg gatttatttt agattcaaac ataacaacaa ccttaatctc aggtatatca
     9961 agagaatgcc aggaacggag aaacgcatag cagcagaccg gtaataataa tcaggtacaa
    10021 cgaagcgcct ttatatttgt gcaatgcggg aaccttgtag accaaccatg ccggaattaa
    10081 acagcccacc ataccgaaga tagggctaca aatagaggtg aagctcagta ccggcgcgtt
    10141 gagcacaatg gcgctccagg ccagcaaaat agcgaaaatc ataatgccgc gctgtaccag
    10201 attttcctta atcttctcgg cgggcatttt gcggcgcagg atattcatca caatgccttg
    10261 cgtcgcttcg cggaatccta aataaacgcc aaagaaggcg gtcatgacgg caaagatgtt
    10321 cagaattacg ctaaccactt tgacccagct agcgccatcg ccgctaataa attgcgcggc
    10381 gatcgccagg gcggaaatat tctgctcgta ggctttcacc gcttcgtcat gccccatcgc
    10441 cagggtgaag gaaaccgcat agaaaaagac ggtaacgaac aggatgccaa acgcgatatt
    10501 catggcgcgc agcgcttatg gcgtgcgacc tcaatagatt tttcgcgtga acggtaagag
    10561 atcaccattg ggcttaacgt ctggataaat aaaatcgagg tcagcgtaaa tggcagggta
    10621 ataatggcgt ttttaatcag cagggccatc ggcggcagcg cgccaatgtt atacagatgc
    10681 cacataccca ccatagagac gcccagcgcc gccactacca gtagcttggt cagcaccatg
    10741 ccggtggaaa ttttgaacag taatttttca ccgcgtgagg aaatcgccac caggatgcag
    10801 atcagcacca gaccataaaa tggactatcg gaaagtaatc cttccgttac gccgaaagta
    10861 tgcagataag aggcgctgtc gttagtaatc gccgtagaat agacgaacat ccagatgacg
    10921 agcatcacaa agtacagcgc gcctaataaa ataccccagt ttttgcccag atagccgctg
    10981 atcacgctgg ggtagtcttt acattccggg gattccgcca gcgtattaat aaacagccgc
    11041 tggaacaggt acatggccgg ataaccaata atagaagaga gtaaaaagac ccaaagtccc
    11101 atcaggccaa cctagacagg aagaaaaacg atccctgcgc cgatcgccat cccgatactc
    11161 ataatgaccc agccggtgtc ggtactatca aatttgatgg cttcacgcca ttcgctttct
    11221 gtcatccctg cccgacgcgc cggggctgat gcgtcgagga ttacgctggt attactagcc
    11281 gattccataa aattctcgct caatgtgtag gtagaggttt tt
//
LOCUS       DAJVSD010000143        11117 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.143, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000143 DAJVSD010000000
VERSION     DAJVSD010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11117
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.143"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(245..688)
                     /gene="csdE"
                     /locus_tag="OQP62_002966"
     CDS             complement(245..688)
                     /gene="csdE"
                     /locus_tag="OQP62_002966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase sulfur acceptor subunit
                     CsdE"
                     /protein_id="HCS1722461.1"
                     /translation="MTNPLYTGHPFGTTVTEETLRAIFLPLTQWEDKYRQLILLGKQL
                     PALPDECKAQAKEIAGCENRVWLGFTRSDNGTMHFFGDSEGRIVRGLLAVLLTAVEGK
                     NAAELQARSPLALFDELGLRAQLSASRSQGLNALSEAIVAATHKG"
     gene            complement(688..1893)
                     /gene="csdA"
                     /locus_tag="OQP62_002967"
     CDS             complement(688..1893)
                     /gene="csdA"
                     /locus_tag="OQP62_002967"
                     /EC_number="3.13.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase CsdA"
                     /protein_id="HCS1722462.1"
                     /translation="MNAFNPTQFRAQFPALADAGVYLDSAATALKPQAVIDATHQFYC
                     LSAGNVHRSQFAQAQRLTAQYEAARAKAARLLNAPDEKSIVWTRGTTEAINMVAQCYA
                     RPRLRPGDEIIVSVAEHHANLVPWLMVAQQTGAQVIKLPLNDRRLPDVERLPELITSR
                     SRILALGQMSNVTGGCPDLTGAISAAHAAGMVVMIDGAQGAVHFPADVQQLDIDFYAF
                     SAHKLYGPTGIGVLYGKPELLEAMSPWLGGGKMIRDVSFEGFTTQSAPWKLEAGTPNV
                     AGVIGLSAALEWLSDIDIEQAENWSRGLATLAEDALAKRPGFRSFRCQDSSLLAFDFV
                     GVHHGDMVTLLAEYGIALRAGQHCAQPLLAELGVTGTLRASFAPYNTQHDVDALVNAV
                     DRALELLVD"
     gene            2086..2313
                     /locus_tag="OQP62_002968"
     CDS             2086..2313
                     /locus_tag="OQP62_002968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="HCS1722463.1"
                     /translation="MKKTAAIISACMLTFALSACSGPNYVMHTNDGRSIVTDGKPQTD
                     NDTGMISYKDANGNKQQINRTDVKEMVALEN"
     gene            2660..3577
                     /gene="gcvA"
                     /locus_tag="OQP62_002969"
     CDS             2660..3577
                     /gene="gcvA"
                     /locus_tag="OQP62_002969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system transcriptional
                     regulator GcvA"
                     /protein_id="HCS1722464.1"
                     /translation="MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSL
                     EDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLPP
                     SFAIQWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKL
                     YAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDWQAYTRQLGLNHINVQQGP
                     IFSHSAMVLQAAIHGQGIALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQA
                     ELGKIAAFRQWILAKAATEQEKFRFRYEQ"
     gene            3596..3991
                     /locus_tag="OQP62_002970"
     CDS             3596..3991
                     /locus_tag="OQP62_002970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HCS1722465.1"
                     /translation="MTSRFMLIVAAISGFIYVALGAFGAHVLSKTLGVVEMGWIQTGL
                     QYQAFHTLAIFGLAVAMQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAYIT
                     PVGGVSFLVGWALLLIGAIRMKRKGASHE"
     gene            3984..5084
                     /gene="rlmM"
                     /locus_tag="OQP62_002971"
     CDS             3984..5084
                     /gene="rlmM"
                     /locus_tag="OQP62_002971"
                     /EC_number="2.1.1.186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010435097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase
                     RlmM"
                     /protein_id="HCS1722466.1"
                     /translation="MNKVVLLCRPGFEKECAAEITDKAGKREIFGFARVKENAGYVIY
                     ECYQPEDGEKLISELPFSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGE
                     LRVEVADTNESKELMKFCRKFTVPLRAALRDAGVLTNYETPKRPVVHVFFIAPGCCYT
                     GYSFAHNNSPFYMGIPRLKFPSDAPSRSTLKLEEALHVFIPEDEWDERLANGMYAVDL
                     GACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFRYRPNRNNISWMVC
                     DMVEKPAKVTALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYLQAQLDEHGVNA
                     QIQARQLYHDREEVTVHVRRLWAAVGGRRDER"
     gene            complement(5143..5853)
                     /gene="fucR"
                     /locus_tag="OQP62_002972"
     CDS             complement(5143..5853)
                     /gene="fucR"
                     /locus_tag="OQP62_002972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose operon activator"
                     /protein_id="HCS1722467.1"
                     /translation="MKAARQQAIVDLLINHKSLTTEALATRLNVSKETIRRDLSELQT
                     QGKVLRNHGRAKYIHRENQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMTIALDAS
                     STCWYLARQLPDIPIQVFTNSHPICQELGKRERIALISSGGQLERKYGCYVNPSLISQ
                     LKSLDIDLFIFSCEGIDGGGDLWDSNAINADFKSILLRRASQSLLLIDKSKFNRSGEA
                     RIGHLDDVTHIVSDAPQS"
     gene            complement(5911..6333)
                     /gene="fucU"
                     /locus_tag="OQP62_002973"
     CDS             complement(5911..6333)
                     /gene="fucU"
                     /locus_tag="OQP62_002973"
                     /EC_number="5.1.3.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose mutarotase"
                     /protein_id="HCS1722468.1"
                     /translation="MLKTISPLISPTLLKVLAEMGHGDEIIFSDAHFPAHSLGPQVIR
                     ADGLSVSDLLRAIIPLFELDSYAPPLVMMAAVEGDTLDPSVEARYRDALSLEAPCPDI
                     VRIDRYAFYERAQKAFAIVITGECAKYGNILLKKGVTP"
     gene            complement(6335..7753)
                     /gene="fucK"
                     /locus_tag="OQP62_002974"
     CDS             complement(6335..7753)
                     /gene="fucK"
                     /locus_tag="OQP62_002974"
                     /EC_number="2.7.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculokinase"
                     /protein_id="HCS1722469.1"
                     /translation="MKQDVILVLDCGATNVRAIAVDRQGKIVARASTANASDIAAENS
                     AWHQWSLDAILQRFADCCKSLSSALSECVVRGITVTTFGVDGALVDAQGKLLYPVISW
                     KCPRTAAVMETIERFISPRQLQTLSGVGAFSFNTLYKLVWLKENHPRLLEQAHCWLFI
                     SSLINHRLTGEFTTDITMAGTSQLLDIHQRDFSPEILQATGLARRLFPRIVEAGAPIG
                     TLQTDAARLLGLPAGVPVISAEHDTQFALFGAGAQQGEPVLSSGTWEILMVRSGQVDT
                     SLLSQYPGSTCELDSQSGLYNPGMQWLASGVLEWVRKLLWTPETPWQTLIDEARAIPA
                     GAEGVRMQCDLLACQNAGWQGVTLNTTRGHFYRAALEGLTAQLQRNLRTLEKIGHFNA
                     TELLLVGGGSRNALWNQIKANQLDIPIKVLDDAETTVAGAAMFGWYGVGEFSSPEQAR
                     AQVNYQYRYFWPQTEPEIIEGV"
     gene            complement(7899..9629)
                     /gene="fucI"
                     /locus_tag="OQP62_002975"
     CDS             complement(7899..9629)
                     /gene="fucI"
                     /locus_tag="OQP62_002975"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HCS1722470.1"
                     /translation="MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALITEK
                     IRHACGAQVECVIADTCIAGMAESAACEEKFSSQNVGVTITVTPCWCYGSETIDMDPM
                     RPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLL
                     RFARAGLAVASMKGKSYLSVGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRID
                     QKIYDEAELEMALAWADKNFRYGEDQNASQYKRNEAQNRAVLKESLLMAMCIRDMMQG
                     NKTLADKGLVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEALLNSSFDWNGVREPFVV
                     ATENDSLNGVAMLFGHQLTGTAQIFADVRTYWSPEAVERVTGQALSALAEHGIIHLIN
                     SGSAALDGACKQRDSEGKPTMKPHWEISQQEADACLAATEWCPAIHEYFRGGGYSSRF
                     LTEGGVPFTMTRVNIIKGLGPVLQIAEGWSVELPKAMHDQLDARTNSTWPTTWFAPRL
                     IGKGPFTDVYSVMANWGANHGVLTIGHVGADFITLAAMLRIPVCMHNVEEAKIYRPSA
                     WAAHGMDIEG"
     gene            complement(9661..10977)
                     /gene="fucP"
                     /locus_tag="OQP62_002976"
     CDS             complement(9661..10977)
                     /gene="fucP"
                     /locus_tag="OQP62_002976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HCS1722471.1"
                     /translation="MGNTTIQTQSFRAVDAEQSKSKRYIIPFALLCSLFFLWAVANNL
                     NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFVIPIPAGILMKKLSYKAGIITGLFLYA
                     FGAALFWPAAEIMNYTLFLIGLFIIAAGLGCLETAANPFVTALGPESGGHFRLNLAQT
                     FNSFGAIIAVVFGQSLILSNVPHQSQEALDKMTPDQLSAYKHSLVLSVQTPYMIIVAI
                     VLVVALLIMLTKFPALQSDDHSDAKQSSFLSSLSRLIRIRHWRWAVLAQFCYVGAQTA
                     CWSYLIRYAIEEIPGMTPGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALL
                     AMLLCLISAFSGGHIGLLALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTII
                     GGGIVTPVMGFVSDAAGKIPTAELVPALCFAVIFIFARFRSQAATN"
BASE COUNT         2579 a         2936 c         3039 g         2563 t
ORIGIN      
        1 gatgcgtatg aattttccag ttctcctgct acgctacatc gagtggtttt atttactcta
       61 aaatcttcac gccattttaa catggattct aacattgtaa tttcattgtg atagctgata
      121 aaaatcaaaa gaatgtttat cagggaaatc tgatgccgaa actaataaag tgactggatt
      181 attttatctg catcgcctga ccgccgcgga cggcgctgtc aggcgacaga atatttacgc
      241 tatttcaacc cttatgcgtt gcggcaacaa tcgcttcgct cagcgcgttc agcccctgac
      301 tgcgtgaggc gctaagctgg gcgcgtaaac ccagctcatc aaacagcgcc agcggtgaac
      361 gagcctgcaa ctcggcggcg ttttttcctt ccaccgcggt gagcaatacc gctagcaggc
      421 cgcggacaat ccgcccctca ctgtcgccga aaaagtgcat cgttccgtta tctgatcggg
      481 taaagcccag ccagacgcgg ttctcgcagc cggctatctc cttcgcctgc gctttgcatt
      541 catccggcag agcggggagc tgttttccta acagaatcaa ctgacgatat ttatcctccc
      601 attgggtcag cgggagaaag atagcgcgta acgtctcttc cgttaccgtt gtgccgaacg
      661 ggtgtccggt ataaagaggg tttgtcatta atccaccagc agttccagcg cgcggtcaac
      721 ggcgttaacc aacgcatcca catcatgttg ggtattatac ggcgcaaaag aggcgcgcag
      781 agtccctgtg acgccaagtt ccgctagcaa tggctgggcg caatgttgcc cggcccggag
      841 cgcaataccg tattccgcca gcagcgtcac catatcgccg tggtgcacgc cgacaaaatc
      901 aaaggccagc aggctggagt cctggcagcg gaacgaacga aagcccggac gtttcgccag
      961 tgcgtcttcc gccagcgtcg ccagcccccg gctccagttt tcggcctgtt caatatcgat
     1021 atcggacagc cattccagcg cagcgctcag gccgatgacc ccggcgacgt tcggcgtccc
     1081 cgcttccagt ttccagggag cgctttgagt ggtgaagcct tcaaagctaa cgtcacggat
     1141 catcttgccg ccgccgagcc agggcgacat cgcctcaaga agctccggct taccgtacag
     1201 cacgccgata ccggtcgggc catacagttt gtgagcggaa aaagcataaa aatcgatatc
     1261 aagctgctgg acatccgccg ggaagtgtac agcgccttgc gcgccatcta tcatcacgac
     1321 cattcccgcc gcgtgagcgg cgctgatagc gcctgtgaga tccggacagc cgcccgttac
     1381 gttcgacatt tgccccagcg ccagtatccg gctgcgcgac gtgatcagtt ccggcagacg
     1441 ctcaacatca ggaagacgtc ggtcattaag cggcagtttt atgacctgcg cgccggtttg
     1501 ttgcgccacc atcagccagg gaacaaggtt ggcgtgatgc tcggcgacgc taacgataat
     1561 ttcatcgccg gggcgcagac gaggacgggc gtaacactgc gccaccatgt tgatcgcttc
     1621 ggtggtgccg cgtgtccaga cgatactttt ttcatcgggc gcgtttaaca gccgcgccgc
     1681 ttttgctctg gccgcttcat attgcgccgt caggcgctgc gcctgcgcaa actggctacg
     1741 atgaacgtta ccggcgctca aacaataaaa ctggtgcgtg gcgtcaatga ctgcctgtgg
     1801 ctttaatgcc gtggcggcgc tatcgagata aacacccgca tcggctagcg cgggaaactg
     1861 cgcgcgaaac tgcgtgggat taaaagcgtt catgatattc ctcggttcag tttaccgatc
     1921 gtggcgtaaa agcgcggctg atacaaggtt tgtcctaacc atcggaatcg tctgtatatc
     1981 ctggcgaatt atgtaaagga ggttatgctg aataatgtta ggcgaatgtt taagcctgtt
     2041 acggagtccg ctttaaatag cacaaacagc tttaaggaga agaagatgaa aaagactgcc
     2101 gcaattatct ctgcatgtat gctgactttt gccctgagcg cctgttccgg tcctaattac
     2161 gttatgcaca ccaatgatgg acgtagcatt gtgaccgacg gtaaacccca gaccgataac
     2221 gataccggta tgatttcgta taaagacgct aatggcaaca aacagcagat caatcgtact
     2281 gacgtgaaag agatggtggc tctggaaaac taaccgtttg ttatacaaaa aaaagcaccg
     2341 caatatggcg gtgctacatt aatcactatg gacagacagg gtaaatgtac aggaagtgaa
     2401 aaagggtagt ctcgctaccg tggtctgaat cgcagaccaa ttgcaaacac aacaacacaa
     2461 catcacaacc gtaagccaaa agcccatcag aacacgcatt ccgataaaac ttttcgttcc
     2521 ggctcaggaa gtgccgccac tataggtatt tgctggtaga acctcaacgg acaatttata
     2581 atgtctcaga ttaaaaaaac taataggtta cctattgtta cctatttgtt aaattcattc
     2641 aacattaagt ccagaggcca tgtcaaaacg attacctcct ttaaatgcgt tacgcgtttt
     2701 tgatgctgcc gcgcgccatt tgagttttac gcgagcagcg gaagaacttt ttgtgacgca
     2761 ggccgcagta agccaccaaa ttaagtcact tgaggatttt ttggggctaa aactgttccg
     2821 ccgccgcaat cgttcgctgc tgctgacgga agaaggccaa agctattttc ttgatattaa
     2881 agagatattt tcccagctaa cggaagcaac gcgtaagctc caggcgcgca gtgccaaagg
     2941 ggcgctgacg gtgagtttac cgcccagttt tgccatccag tggctggtgc ccaggctctc
     3001 cagctttaac tcagcttatc cgggaattga cgttcggata caagccgttg atcgtcagga
     3061 agataaactg gcagacgatg tcgatgtcgc gattttttat ggccggggaa actggccggg
     3121 cttgcgcgtc gaaaaattat acgcagaata tttattgccc gtctgttctc ctttattgct
     3181 cacaggcgaa aaaccgttaa aaacgccgga ggatctggcg aaacatacgt tattgcacga
     3241 tgcctcccgg cgtgactggc aggcctatac tcgtcagtta gggctcaacc atattaacgt
     3301 tcagcaaggg ccgatattta gccacagcgc gatggtgcta caggcggcta ttcacggaca
     3361 ggggatcgcg ctggcgaata atgttatggc gcagtcggaa attgaagccg ggcgactggt
     3421 gtgtccattt aacgatgttc tggtgagtaa gaatgctttt tatctggttt gtcatgacag
     3481 ccaggcagaa ctgggtaaaa tagccgcctt ccgtcagtgg attttggcga aggcggcgac
     3541 ggagcaagaa aaattccgtt ttcgttacga acaataatta acttagggta tgaccatgac
     3601 cagccgtttt atgctgattg tcgccgctat cagcggtttt atttacgttg ctctgggcgc
     3661 gttcggggcg catgttttga gtaaaaccct gggcgtggtt gaaatgggct ggattcagac
     3721 cggcctgcaa tatcaggcgt tccatacgct ggcgatcttt ggcctggcgg tggcgatgca
     3781 gcgccgtatc agcatctggt tttactggag cagcgttttt ctggcgctgg gcacggtgct
     3841 gtttagcggc agcctgtact gccttgcgct ttcgcatctg cgcctgtggg cgtatatcac
     3901 gcctgtcggc ggcgtcagtt tcctggtggg ctgggcgcta ttgctgattg gcgccattcg
     3961 tatgaaacgt aagggcgcga gccatgaata aagttgtctt gctctgccgt ccggggtttg
     4021 aaaaagagtg cgctgcagaa attaccgata aagcgggaaa acgggaaata tttggttttg
     4081 cacgcgtaaa agagaacgca ggctatgtca tttatgaatg ctaccagccg gaagatggcg
     4141 aaaagctgat ttcagaactg ccgttcagtt cgctgatttt cgcccgccag tggtttgtgg
     4201 tgggtgaact gctgcaacat ttaccgccgg aagacagaat cacgccgatt gtcggcatgt
     4261 tgcagggcgt agtggaaaag ggcggcgagc tgcgggttga agtcgccgac accaatgaaa
     4321 gtaaagaact gatgaagttc tgccgcaaat ttacggtgcc gctgcgcgcg gctttgcgtg
     4381 atgcgggcgt attgacgaat tatgaaacgc cgaagcgtcc ggtcgttcat gtctttttta
     4441 tcgcgccagg atgctgctat accggttatt cgttcgcgca taacaattca ccgttttata
     4501 tgggcatccc gcgtttgaag tttccgtctg atgcgccgag ccgctcaacg ctgaaactgg
     4561 aagaggcgct ccacgttttc atcccggaag atgagtggga tgaacgtctg gcaaacggca
     4621 tgtacgcggt ggatttgggc gcctgtcccg gcggatggac gtaccagtta gtgaagcgca
     4681 atatgtgggt ctactccgta gataacggcc cgatggcgca aagcctgatg gacaccggac
     4741 aggtgacctg gttgcgtgag gatggcttca ggtaccgtcc gaaccggaat aatatttcat
     4801 ggatggtctg cgatatggtg gagaagccgg ccaaagtcac cgcgttaatg gcgcagtggc
     4861 tggtgaacgg ctggtgtcgg gagacgattt ttaaccttaa actgccgatg aaaaaacgct
     4921 atgaagaggt atcgcataac ctggcgtatc ttcaggcgca gttggatgag catggcgtta
     4981 atgcgcagat ccaggcgcgt cagctttatc acgatcgcga agaagtgacg gtacacgtgc
     5041 gtcggttgtg ggcggctgtt ggcggacgtc gcgacgagcg ataaaaacgc gctgccgtca
     5101 tccggcgcgt catcagcgcc ggatggcgca cgcttatccg gcctatgact gcggcgcatc
     5161 tgaaacgata tgcgtcacat catccagatg gccgatgcgc gcctctcctg aacgattaaa
     5221 tttactttta tcaatcaata ataaagactg cgaggcgcgc ctgagcagga tagatttaaa
     5281 atcggcgttg atcgcattgg agtcccacag atcgccgccg ccgtcgatcc cctcgcagga
     5341 aaagatgaac agatcgatat caagcgattt tagctgtgag ataagcgacg gattaacgta
     5401 acagccatat ttacgttcaa gctggccgcc ggaacttatc agcgcaatgc gttcgcgttt
     5461 tcccagctcc tgacagatag gatggctatt ggtaaaaacc tgaatgggaa tatccggcaa
     5521 ctggcgggcc agataccagc aggttgaact ggcatccagc gcaatcgtca ttccttcttc
     5581 tatccacgct aacgcttcac gggcaatatc ggctttatgc gcataatggc ttttcaggcg
     5641 gatatggaat ggatcgccgc tgtcctgatt ttcacgatga atatatttag ctcgtccgtg
     5701 attacgcagc acttttccct gcgtctgtag ttcactgaga tcgcggcgga tggtctcttt
     5761 actgacgtta agccgggtgg ccagcgcttc ggtggtcaga cttttatgat tgatcagcag
     5821 atcgactatc gcttgttggc gtgccgcttt catttttctc accccatcat tcgatgaacg
     5881 cccgcgtcat gcgggcgcac cggcaagaga ttacggcgtt accccttttt ttaaaagaat
     5941 atttccgtac ttcgcgcact cacctgtgat aacgatcgca aacgcttttt gcgcccgctc
     6001 ataaaacgca tagcggtcga tacgaacgat atccgggcac ggcgcttcta atgacaaagc
     6061 atcgcgataa cgcgcttcaa cgctggggtc gagcgtgtcg ccttctacgg cggccatcat
     6121 caccagcggc ggggcgtagc tatccagctc aaagagcgga atgattgccc gcagtagatc
     6181 gctgacgcta agaccatcgg cgcgaatcac ctgcgggccc aggctatgcg cgggaaagtg
     6241 agcgtcagaa aaaatgattt cgtccccgtg gcccatctcg gccagcactt tgagcagtgt
     6301 cggggaaatt aacggtgaaa tggtttttag catttcatac tccctcaata atttcaggtt
     6361 cggtttgcgg ccagaaatag cgatactgat aattgacctg cgcacgcgcc tgctccgggc
     6421 tactaaattc gcctacgccg taccagccaa acatggcagc gccggccacg gtggtttccg
     6481 cgtcgtccag cactttgata gggatatcaa gttgattcgc tttaatttga ttccacaaag
     6541 cgttgcgact gccgccgcca accagtaaca gttctgtggc gttaaaatgg ccgattttct
     6601 ccagcgtgcg cagattacgc tgaagttgcg ccgtcaggcc ttccagcgcg gcgcgataga
     6661 aatggccgcg ggtggtattg agcgtcacgc cctgccagcc tgcattttga caggcgagca
     6721 gatcgcactg catccgcacg ccttccgcgc cagcgggaat agcgcgcgct tcgtcgatca
     6781 gcgtttgcca tggcgtttcc ggcgtccaca gcagttttcg tacccattcg agtacgccgg
     6841 aggccagcca ctgcattccg gggttataaa gccccgactg actgtccagt tcacaggtcg
     6901 agcccggata ctgactgagc agcgaggtat ccacctgacc gctgcgcacc atcagaatct
     6961 cccatgttcc ggaggagagc actggttcac cttgctgcgc gccagcgccg aataacgcga
     7021 actgagtatc gtgttcggca gagatcactg gcacacccgc cgggagaccg agtagcctgg
     7081 ccgcgtctgt ctgtagcgtg cctatcgggg cgcccgcttc cacgatacgc gggaacaggc
     7141 ggcgcgccag gcccgtcgcc tgcaggattt ccggactaaa gtcgcgctga tggatatcca
     7201 gtagctggct ggtgcctgcc atagtgatat cggtcgtaaa ctctccggtc agacggtggt
     7261 taatcagcga cgagataaac agccagcagt gagcttgttc cagcaggcgc ggatgattct
     7321 ctttaagcca gaccagttta tacagcgtgt taaagctgaa cgcgccgacg ccggagagcg
     7381 tctgcaattg ccggggcgag ataaagcgct caatcgtttc catcacggca gcggttcgcg
     7441 ggcatttcca actgatgacc gggtagagca gcttaccctg cgcatcgacc agcgcgccat
     7501 cgacgccgaa agtagtcacc gtaataccgc gaacaacaca ctccgacagg gcgctggaga
     7561 gtgacttgca gcagtcggcg aaacgttgca ggatggcgtc cagcgaccac tgatgccagg
     7621 cgctattttc tgcggcaatg tcgctggcgt tagcggttga ggcgcgggcg acaattttcc
     7681 cctggcgatc aacggcgatc gcccgaacgt tagtcgcacc gcagtcgaga accaggataa
     7741 cgtcttgttt catagataac tccataaacg ccgcctgatg gcgctacgct tatccggcct
     7801 acggttcacg cgcccgtagg cccggtaagc ctgcgccacc gggctaagcc gcattaacgt
     7861 ttatacagcg ggccataatt ctggcaggcg cgataatcct agccttcgat atccataccg
     7921 tgagccgccc aggcggaagg acggtagatc ttcgcctcct ccacgttgtg catacatacc
     7981 gggatacgca gcatcgcggc gagagtaata aagtccgccc ctacatgacc gatggtgagt
     8041 acgccgtggt tagcgcccca gttcgccatc accgaataga catcggtaaa cggacctttg
     8101 ccgataagac gcggcgcaaa ccaggtggta ggccaggtag agttggtgcg ggcatcaagc
     8161 tgatcgtgca tcgctttcgg cagttcgacg ctccacccct cggcgatttg cagtactggt
     8221 cccaggcctt tgatgatatt cacgcgggtc atggtgaatg gcacgccgcc ttcggtcaga
     8281 aaacgggatg agtagccgcc gccgcggaag tattcgtgaa ttgccgggca ccattcagtg
     8341 gccgccagac acgcatccgc ctcttgttgg ctgatttccc agtgcggttt catggtcggc
     8401 ttgccttcgc tgtcgcgctg tttacaggca ccgtccagcg cggcagaacc ggagttaatc
     8461 aggtgaataa tgccgtgttc cgccagggcg ctgagcgcct ggccggtgac gcgttctacg
     8521 gcttccggcg accagtaagt tcgcacgtcg gcgaatatct gcgcggtacc ggtgagttga
     8581 tggccaaaca gcatcgctac tccgttcaga ctgtcatttt cggtggcgac gacaaacggt
     8641 tcgcgtacgc cgttccagtc aaaagagcta ttgagcagcg cttcggcggt atcgccgttc
     8701 gggtattgat cggtccagtg gcgctggccc tggaagccgg cggcaatggc gttgtagccc
     8761 agcgattctt caactaaccc tttgtccgcc agcgtcttgt tgccctgcat catgtcgcga
     8821 atacacatcg ccatcagcag gctctctttt agcaccgcgc ggttctgggc ttcattgcgc
     8881 ttatactgcg aggcgttttg atcttcgccg tagcggaagt ttttatccgc ccacgccagc
     8941 gccatctcca gttcggcctc atcataaatt ttttgatcga tacggcggcg cagttcggtc
     9001 atatctaccg cttgcacctt catgcccagc caggattcaa agaagttatg atcgacaatg
     9061 gaacccgcga tccccatcga cacgccgccg acggagaggt agcttttgcc tttcatgctg
     9121 gctaccgcta accctgcccg cgcaaaacgc agcagttttt cttcgacgtc ggcaggaatg
     9181 gaggtatcgt cggcatcctg cacgtcatgg ccataaatgg agaacgccgg aatgcctttt
     9241 tggctgtgcg ccgccagcgc cgcggcaagg taaaccgccc cgggacgctc tgtgccgtta
     9301 aagccccaga tggctttcgg acgcatcggg tccatatcaa tggtttcgct gccatagcac
     9361 cagcacggcg taacggtaat ggtcacgccc acgttctggc tactgaattt ttcttcacag
     9421 gcggcggatt ccgccattcc ggcaatacag gtatccgcaa tgacgcactc cacctgtgcc
     9481 ccacaggcgt ggcggatttt ctcggtgatg agcgccgccg tcgctttcgc catgttcatg
     9541 gtttgctctt cgagcgactc gcgtacgccc atacgacgtc catcaatcac cgggcggata
     9601 ccgattttcg gtaagctgat ttttttcatg acagattcct cacgttattc ggataaatgt
     9661 tcagtttgtc gccgcttgtg aacggaaacg ggcaaaaatg aagatgacgg caaagcacaa
     9721 tgccggaacc agttcggcgg tcgggatttt gcctgcggcg tcgctaacga agcccattac
     9781 tggcgtgaca ataccgccgc caataatggt catgacgata aaagacgagc cgtacttagt
     9841 gtcctgtccc agatttttga tacccagcga gaagatggtt gggtactgga ttgacataaa
     9901 tgcgctacac aacgtcagcg ccagcaggcc gatatgtccg ccgctaaagg cggaaatcag
     9961 acacaggagc atggcaagca gggcataggc ggccagcact ttatgcggcg cgaagcggct
    10021 gataagccag gtcccggtga aacggccgat aaagaagcac accatcgtgc cggtcaggta
    10081 gttggcggcg aaaccgggcg tcattccagg gatctcctca atggcgtagc ggatcagata
    10141 gctccagcag gcggtttgcg cccccacgta gcagaactgc gccagcaccg cccagcgcca
    10201 gtggcggata cggatgagtc gggagagaga agataagaaa gagctttgtt tagcatcgct
    10261 atgatcgtca ctttgcaggg ccggaaattt ggtcagcata atcagcagcg caactactaa
    10321 tacgatggcg acgataatca tgtatggcgt ttgtaccgat aacaccaggc tgtgtttata
    10381 ggcgctaagc tgatccggcg tcattttatc aagcgcttct tgtgattgat gcggcacgtt
    10441 agacaaaata aggctttgcc caaacacaac ggcgataata gcgccaaagg agttaaaagt
    10501 ttgcgccaga ttaagccgga aatgtccgcc gctttctgga cctaatgccg tcacaaaagg
    10561 attggccgca gtttcaaggc agcctaaacc ggcggcgatg ataaacaggc caattaaaaa
    10621 taatgtgtaa ttcattatct cggcggcagg ccagaataat gcggcgccaa aagcatacaa
    10681 aaaaagtcca gtgataatcc ctgctttata actgagtttt ttcatcaaaa tcccagcggg
    10741 aattggaatg acgaaataac cgaaataaaa ggctgactga ataagtccgg cctggaagtt
    10801 agttagcgta aaagcttgtt gaaactgcgg taataaaatg tcattcagat tattggcgac
    10861 ggcccacaga aaaaatagcg agcaaagtaa ggcgaatgga ataatgtagc gcttgctttt
    10921 gctttgctct gcatccacag cacgaaaact ctgtgtttgt attgttgtgt ttcccatagc
    10981 atcctcatcg gttcagaagc ttttgcgtgc ggtcggttct ggtcaccaga ccgtaaaatt
    11041 aggtgagttc gcttttctta ccggtaataa attggcgtcc ggaatgaact catggagtca
    11101 ttttcaaata aaaaagg
//
LOCUS       DAJVSD010000144        11051 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.144, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000144 DAJVSD010000000
VERSION     DAJVSD010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 11051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11051
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.144"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(140..1609)
                     /gene="lysP"
                     /locus_tag="OQP62_002977"
     CDS             complement(140..1609)
                     /gene="lysP"
                     /locus_tag="OQP62_002977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-specific permease"
                     /protein_id="HCS1722472.1"
                     /translation="MGSKTKTTEAPALRRELKARHLTMIAIGGSIGTGLFVASGATIS
                     LAGPGGALFSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNY
                     WYNWAVTIAVDLVAAQLVMGWWFPDTPGWIWSALFLCVIFLLNYISVRGFGEAEYWFS
                     LIKVATVIIFIIVGVAMIIGIFKGVEPVGWSNWTTGDAPFAGGFAAMIGVAMIVGFSF
                     QGTELIGIAAGESENPEKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPNLLRNDV
                     KDISVSPFTLVFQHAGLLSAAAIMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPR
                     IFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAIS
                     HYRFRRGYVLQGYDVNDLPYRSGFFPLGPIFAFVLCLIITLGQNYEAFLKDTIDWGGV
                     AATYIGIPLFLLIWFGYKLIKGTHFVRYSEMHFPERVKK"
     gene            complement(1799..2662)
                     /locus_tag="OQP62_002978"
     CDS             complement(1799..2662)
                     /locus_tag="OQP62_002978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1722473.1"
                     /translation="MHITLRQLEVFAEVLKSGSTTQASVMLSLSQSAVSAALTDLEGQ
                     LGVQLFDRVGKRLVVNEHGRLLYPRALALLEQAVEIEQLFREDNGAIRVYASSTIGNY
                     ILPAMIARYRQHYPALPLELSVGNSQDVINAVLDFRVDIGLIEGPCHSTEIISEPWLE
                     DELVVFAAPSSPLTQGPVTLEQLAASPWILRERGSGTREIVDYLLLSHLPRFHMAMEL
                     GNSEAIKHAVRHGLGISCLSRRVIAEQLQAGTLGEVAVPLPRLVRTLWRVHHRQKHLS
                     NALQRFLSYCE"
     gene            2783..3832
                     /locus_tag="OQP62_002979"
     CDS             2783..3832
                     /locus_tag="OQP62_002979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HCS1722474.1"
                     /translation="MTELTLQNHRRTMWHFIPGLALSAVITGVALWGGAIPAVAGAGF
                     SALTLAILLGMVIGNTVYPQIWKQCDGGVLFAKQHLLRLGIILYGFRLTFSQIADVGI
                     SGIVIDVLTLSSTFMLACFLGQKVFGLDRHTSWLIGAGSSICGAAAVLATEPVVKAEA
                     SKVTVAVATVVIFGTIAIFLYPAMYPLLAHWFSPETYGIYIGSTMHEVAQVVAAGHAV
                     SPDAENAAVIAKMLRVMMLAPFLIILAARVKQLSPATGAEKSKITIPWFAIFFIVVAI
                     FNSFHLLPKAVVDMLVTLDTVLLAMAMAALGLTTHVSALKKAGAKPLLMALALFAWLI
                     IGGGAINVLIHSLIA"
     gene            3911..4768
                     /gene="nfo"
                     /locus_tag="OQP62_002980"
     CDS             3911..4768
                     /gene="nfo"
                     /locus_tag="OQP62_002980"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HCS1722475.1"
                     /translation="MKYIGAHVSAAGGLANAPARAAEIGATAFALFTKNQRQWRAAPL
                     TPQVIDDFKIACEKYHFSAAQILPHDSYLINLGHPVSEALEKSRDAFLDEMQRCEQLG
                     LTLLNFHPGSHLMQIAQEDCLARIAESINIALAQTEGVTAVIENTAGQGSNLGFEFEQ
                     LAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPEACEKTFAEFGKIVGFQYLRGMHLN
                     DAKSAFGSRVDRHHSLGEGNIGHDAFRWIMQDARFDGIPLILETINPDIWAEEIAWLK
                     AQQIAEAMA"
     gene            complement(4833..6521)
                     /gene="fruA"
                     /locus_tag="OQP62_002981"
     CDS             complement(4833..6521)
                     /gene="fruA"
                     /locus_tag="OQP62_002981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIBC"
                     /protein_id="HCS1722476.1"
                     /translation="MKTLLIIDANLGQARAYMAKTLLGAAAHKANLEIIDNPNDAELA
                     IVLGESLPNDNALNGKKVWLGDIGRAVAHPELFLSEAKSHATPYSAPAAAAPAASGGP
                     KRVVAVTACPTGVAHTFMAAEAIETEAKKRGWWVKVETRGSVGAGNAITPEEVAEADL
                     VIVAADIEVDLAKFAGLPMYRTSTGLALKKTAQELDKAVAEATPYQPAGKASQAATEG
                     KKESAGAYRHLLTGVSYMLPMVVAGGLCIALSFAFGIEAFKVPDTLAAALMQIGGGSA
                     FALMVPVLAGYIAFSIADRPGLTPGLIGGMLAVSTGSGFIGGIIAGFLAGYMAKLIST
                     KLKLPQSMEALKPILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTANAVL
                     LGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQTYAPMAAIMAAGMVPPLALGLATMVA
                     RRKFDKAQQEGGKAALVLGLCFITEGAIPFAARDPMRVLPCCIVGGALTGAISMAVGA
                     KLMAPHGGLFVLLIPGAITPVLGYLLAIVAGTLVAGLAYAVLKRPETEVAAKAA"
     gene            complement(6538..7476)
                     /gene="fruK"
                     /locus_tag="OQP62_002982"
     CDS             complement(6538..7476)
                     /gene="fruK"
                     /locus_tag="OQP62_002982"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HCS1722477.1"
                     /translation="MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGIN
                     VAKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGE
                     VTDFNFSGFDVTPADWERFVNDSLSWLGQFDMVCVSGSLPAGVSPEAFTDWMTRLRSQ
                     CPCIIFDSSREALVAGLKAAPWLVKPNRRELEIWAGRKLPEMKDVIDAAHALREQGIA
                     HVVISLGAEGALWVNASGEWIAKPPAVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLR
                     LATAVAALAVSQSNVGITDRPQLAAMMARVDLQPFN"
     gene            complement(7476..8606)
                     /gene="fruB"
                     /locus_tag="OQP62_002983"
     CDS             complement(7476..8606)
                     /gene="fruB"
                     /locus_tag="OQP62_002983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused PTS fructose transporter subunit IIA/HPr
                     protein"
                     /protein_id="HCS1722478.1"
                     /translation="MFQLSVQDIHPGEQAGNKEEAIRQIAAALAQAGNVAGGYVDGML
                     AREQQTSTFLGNGIAIPHGTTDTRDQVLKTGVQVFQFPQGVTWGEGQVAYVAIGIAAS
                     SDEHLGLLRQLTHVLSDDSVAEQLKSATTAEELRALLMGEKQSEQLKLDNETMTLDVI
                     ASSLVTLQALNAARLKEAGAVDAAFVAKTINDSPMNLGQGIWLNDSAEGNLRSAVAVS
                     RATQAFDVEGEKAALLVTVAMNDEQPIAVLKRLGDLLLNNKADRLLSADAATLLALLT
                     SDDALTDDVLSAEFVVRNEHGLHARPGTMLVNTIKQFNSEITVTNLDGTGKPANGRSL
                     MKVVALGVKKGHRLRFTAQGEDAEQALKAIGDAIAAGLGEGA"
     gene            8976..10157
                     /gene="setB"
                     /locus_tag="OQP62_002984"
     CDS             8976..10157
                     /gene="setB"
                     /locus_tag="OQP62_002984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar efflux transporter SetB"
                     /protein_id="HCS1722479.1"
                     /translation="MHNSPAAAAPKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTD
                     EVHARPGMVGFFFTGSAVIGIIVSQFLAGRSDKKGDRKKLIVFCCVLGMLACVLFAWN
                     RNYFILLFIGVFLSSFGSTANPQMFALAREHADRTGREAVMFSSILRAQVSLAWVIGP
                     PLAYALAMGFSFTVMYLSAAVAFIVCGVMVWFFLPSMRKDAPLATGTLEAPRRNRRDT
                     LLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFA
                     KRLGKRLLMCIAVVAGLCFYAGMLLAHAPATLLGLQLLNAIYIGILGGIGMLYFQDLM
                     PGQAGSATTLYTNTIRVGWIIAGSLAGIAAEIWNYHAVFWFALVMIVATMFCLARIKD
                     V"
     gene            complement(10222..10887)
                     /locus_tag="OQP62_002985"
     CDS             complement(10222..10887)
                     /locus_tag="OQP62_002985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722480.1"
                     /translation="MRGENSEIDLVDVSLFLIRKWLSIVIATFIFVAIGYVFVSVHHD
                     TKVVSITIKPNLDTPATYALCGYANDIQCKTTVILNQFSRFLPAEYKNKISFDAKNQL
                     VLFKAQGREESVNNIISTLKNSVDKMAAWYIDDGDIKRYSVHKNMLQTETYTKLSLLS
                     EAVKNNANIEVIDVAVTPKYKMRLVLVLCGLMGVIFSITGLLCKRALTEYRIEKKTMN
                     DRA"
     gene            complement(10889..11011)
                     /locus_tag="OQP62_002986"
     CDS             complement(10889..11011)
                     /locus_tag="OQP62_002986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722481.1"
                     /translation="MCGFYLMKKYTFAARAFIFTLVLLFVISVFGLTISVLKGM"
BASE COUNT         2620 a         3149 c         2700 g         2582 t
ORIGIN      
        1 aataattatg tcatttgaac caatcataaa gaaaaaacaa aaaaccctct cgaatgagag
       61 ggttagaagg gtcaggttca ggcagtccgt gccggatggc ggcataaagc cttatccggc
      121 ctatgacgag aatattacgt tactttttaa cgcgttccgg gaagtgcatt tcgctatagc
      181 gcacgaaatg cgtgcctttt atcagcttgt agccgaacca gataagcagg aacagcggaa
      241 taccgatata ggtcgccgcg acgccgcccc agtcgatggt atctttcagg aacgcttcat
      301 agttctgccc caacgtaata atcaggcaca gtacaaaggc gaaaatcggc cccagcggga
      361 agaacccgga acggtacggc aaatcattca catcataccc ttgtaacacg taaccgcgac
      421 ggaagcgata atggctaatg gcaatcccca gccaggcgat gaagcccgtc ataccggagg
      481 tgttcaacag ccacagatag accgtctggt tgccgaacat tgaggtcaaa aagcaaagac
      541 cggcaatcac ggtggtggca taaagcgcat tgcgcggtac gccgccgcgg gacaatttcg
      601 caaaaatacg cggggcctta ccgtcacagg ccagggtgta gagcatacgg gtcgaggcat
      661 acatcccgga gttacccgca gacagtaccg ccgtcaggat aaccgcattc attatcgccg
      721 ccgcagacaa caagcccgca tgctggaaca ctaaggtaaa cggactgacg ctaatgtctt
      781 tgacgtcgtt acgcagcagg tttggatcgg tataaggaat gatcaggctg ataatcaaaa
      841 tcgcgaaaac ataaaacagc agaatacgcc agaacacctg acgcaccgcg cgcggaatat
      901 tcttctccgg gttttcagat tccccggcgg caataccaat cagctcagtt ccctggaaag
      961 agaagcccac gatcatcgcg acgccaatca ttgccgcaaa accgccagcg aaaggcgcat
     1021 cgcccgtcgt ccagttgctc cagccgaccg gctcgacacc tttaaagatg ccgataatca
     1081 tcgctacgcc aacgatgatg aagataataa cggtcgcgac tttaattaac gagaaccagt
     1141 actccgcctc gccaaaaccg cgtacagaaa tgtagttcag caagaaaatg acgcagagga
     1201 atagcgcgct ccagatccag cccggcgtgt ccgggaacca ccagcccatc accaattgtg
     1261 cggcaaccag gtcaacagcg atagtcaccg cccagttgta ccagtagttc cagcccagcg
     1321 cgaaaccaaa gccttcttcc acatagttct gaccatatgt cgcaaacgag ccagataccg
     1381 gcatataggc cgccagctcg ccaagactgg tcatcaggaa gtagaccatc aaaccaatca
     1441 gaatataaga aaacagcgcg ccgcctggcc ccgccagaga aattgtcgca ccagatgcaa
     1501 cgaaaagacc tgtcccgatg gagccgccaa tggcaatcat cgtcaggtga cgcgccttta
     1561 attcgcgacg tagcgcgggc gcttctgtgg ttttagtttt ggaacccatg tgaaaatgct
     1621 atccatccaa aaaatgaggc gcgattgtaa cagacgaaat actatccttc cgacacaaat
     1681 gcgcggttat aagagacctt catgaccggc cacggattat aagtaaagca gagaataacg
     1741 tatacgtaag cggatactaa aaatggcgat gccgctcggg cagccctcct cttcaccttt
     1801 attcacagta actcaaaaaa cgctgcaacg cgttagaaag atgtttctgc cgatgatgaa
     1861 cacgccacaa cgtgcgcacc aggcgcggta acggcaccgc gacttcgccc agggttcccg
     1921 cctgaagttg ttcagcaatc acccggcgcg ataaacagct tatccccagt ccatgacgca
     1981 ccgcatgttt gatcgcttct gaattcccca actccatcgc catatgaaag cgcggcaaat
     2041 gcgacaacag caaataatcg acaatttccc gcgtaccgga accgcgctcg cgtaaaatcc
     2101 atggggatgc cgcaagctgt tccagcgtca ccggcccctg cgtcagcggc gaggacggcg
     2161 cggcaaagac caccagctca tcttccagcc acggctcaga gataatctct gtactgtgac
     2221 acggcccttc aatcaggccg atatcaaccc gaaaatccaa caccgcgtta atcacgtcct
     2281 ggctgtttcc cacgctgagt tccagcggca aggccggata atgctggcga tagcgggcaa
     2341 tcatggcggg taaaatgtaa ttgccgatgg tgctactggc ataaacccgt atcgcgccgt
     2401 tatcttcacg aaatagctgc tcaatttcta ccgcttgctc cagcaatgcc agcgcgcgcg
     2461 ggtataacaa gcgcccatgt tcgttgacca ccagccgttt ccccacccga tcaaacaact
     2521 gtacgccgag ctgaccttcc agatcggtga gcgcggcgct aacggcggac tgcgataatg
     2581 acagcatgac cgacgcctgg gttgttgaac cgcttttcag tacttcagca aacacttcaa
     2641 gttgtcgtag cgtaatatgc atagtcgtat cccaccgata gcgtttcact taccacttat
     2701 aaagattaat tataaatata taatcaattt tatttttaaa ccagatcacc gtaaccttat
     2761 tgtccatata caggagaagg ttatgacaga actcaccttg cagaatcatc gtcgtacaat
     2821 gtggcatttt ataccggggc tcgctctgag cgccgtcatt acaggagtcg ccctgtgggg
     2881 cggcgctatc cctgctgttg caggcgcggg gttcagcgcc ctgaccctgg ctatcctgct
     2941 gggtatggtt atcgggaata ccgtctatcc acaaatatgg aaacaatgcg acggcggcgt
     3001 gctgtttgca aaacaacatt tactgcgttt agggattatc ctttacggct tccgccttac
     3061 cttttcacaa atcgccgacg tgggtattag cggtattgtg attgacgtat taacgctttc
     3121 cagcacgttc atgctggcct gcttcttagg ccaaaaagtc tttggtctgg acaggcatac
     3181 cagctggctg attggcgccg gtagcagtat ctgcggcgcg gcggcggtac tggcgacaga
     3241 accggtggta aaagcggaag ccagtaaggt tactgtagcc gtcgcgactg tcgttatttt
     3301 cggcaccatc gctattttcc tttacccggc aatgtatccg ctgctggcgc actggttcag
     3361 cccggaaact tacggcatct atatcggctc aaccatgcat gaagtcgcgc aagtggtcgc
     3421 agcgggtcac gccgttagcc cggatgcgga aaatgcggca gttatcgcta agatgctgcg
     3481 tgtcatgatg ctggcgccgt tcctgatcat tctggcggca cgcgttaaac agctttcccc
     3541 ggcgaccggc gcggaaaaaa gcaaaattac cattccgtgg tttgctattt tcttcatcgt
     3601 agtggcgatc ttcaactctt tccacctgct gccgaaagcc gtggtggata tgctggtgac
     3661 gctggacacg gtactgctgg cgatggcaat ggcggcgttg ggtctgacca ctcacgttag
     3721 cgcattgaaa aaagcggggg cgaaaccgct gctgatggcg ctggcattat tcgcctggct
     3781 gattattggc ggtggcgcca ttaacgtcct aatccatagc cttatcgcat aaattattac
     3841 gtttcacgcc tgttaacccg ttatcatagc gttcgtaatg aaccgttagc gggtttaaca
     3901 ggagtctttt atgaaataca tcggagcgca cgtcagcgct gctggcggtc tggctaacgc
     3961 ccctgcccgc gcggctgaaa ttggcgcaac ggcctttgcg cttttcacaa aaaaccagcg
     4021 tcagtggcgt gccgcccccc ttactcccca ggtcattgat gactttaaaa tcgcctgtga
     4081 aaagtatcat ttctcggcgg cgcaaatcct tccccacgat agttacctga ttaatctggg
     4141 ccatccggtc agtgaagcgc tggaaaaatc acgcgatgcc tttctcgatg aaatgcagcg
     4201 ctgtgaacaa ctcggcttaa ccttgcttaa ttttcatccc ggtagccatc tgatgcagat
     4261 tgcacaggag gattgcctgg cgcggatcgc ggaatctatc aatattgccc tcgcgcagac
     4321 cgagggcgtt acggcggtta tcgaaaatac agccggtcag ggcagtaatc tggggtttga
     4381 gtttgaacag ttagccgcca tcatcgacgg cgtggaagat aagtcgcgcg ttggcgtctg
     4441 tatcgatacc tgccatgcct ttgccgctgg atacgatctg cgtacgccag aggcgtgcga
     4501 aaaaacgttc gccgaattcg ggaaaattgt cggatttcag tatttgcgcg gaatgcacct
     4561 taacgacgcc aaaagcgcct tcggtagccg cgttgaccgc catcacagtc tgggtgaagg
     4621 caatatcggc cacgatgcgt ttcgttggat tatgcaggat gcgcgttttg acggtattcc
     4681 gctgatactg gagaccatca atcctgatat ctgggcggaa gagattgcgt ggttaaaagc
     4741 ccagcaaatt gccgaagcga tggcctgacg ctcaatgttc ttcaggcaat aaaaaaggca
     4801 gagcgcgctc tgcctttttt agcgtgtttc tcttatgccg cttttgccgc gacttccgtc
     4861 tccggacgtt tcaggacggc ataagccagt cctgccacca gcgtaccggc cacaattgcc
     4921 agcaggtatc ccaataccgg cgtaattgcg cctgggataa gcagaacaaa cagaccgcca
     4981 tgcggcgcca tcaattttgc gcctaccgcc atagaaatag ccccggtcaa cgcgccgcca
     5041 acgatacagc acggcagtac acgcatcggg tcgcgcgccg caaacggaat agcgccttca
     5101 gtgataaagc acagccccag caccaacgcc gctttaccgc cttcctgctg cgctttgtcg
     5161 aacttacgac gcgccaccat cgtcgccaga cccagcgcta acggcggtac catacctgcg
     5221 gccatgatcg ccgccatcgg cgcgtaagtt tgcgtactca gcagaccaac gccaaacgca
     5281 tacgccgctt tgttcaccgg gccgcccatg tcggtacaca tcatcccgcc gagaatcgcg
     5341 cccaacagca ccgcgtttgc cgtccccatg gtttgcagcc agtgggtgag cccttccaga
     5401 atcccggcaa ccggtttacc gatcaggtaa atcatcgcca gccccaccac cagactggaa
     5461 attaacggga tgatcaggat tggcttcagc gcttccatac tttgcggaag tttcagtttg
     5521 gtactgataa gcttcgccat atacccggca aggaagccgg caatgatccc gccgataaaa
     5581 ccggaaccgg tgctaaccgc cagcataccg ccaatcagac ctggcgtaag gccagggcga
     5641 tccgcgatgg agaaagcgat ataacccgcc agtaccggca ccatcagcgc aaacgccgaa
     5701 ccgccgccaa tctgcatcag cgccgccgcc agcgtgtccg gcaccttaaa ggcttcaata
     5761 ccaaaggcga aggaaagcgc aatacacagt cccccggcaa ccaccatagg cagcatgtaa
     5821 gaaacgcccg tcaacagatg ccggtatgcg ccagcgctct ctttcttccc ttcggtcgcc
     5881 gcttgcgatg ccttacccgc cggttgatac ggcgtcgctt ccgctacggc tttatccagc
     5941 tcctgcgccg tctttttcag cgccaggccg gtcgacgtgc ggtacatcgg gagaccggca
     6001 aacttcgcca gatccacttc gatatccgcc gccacaatca ctaaatccgc ttccgccacc
     6061 tcttccgggg tgatggcatt gccggccccc acggagccgc gcgtttcgac ttttacccac
     6121 cagccgcgtt ttttcgcttc tgtttcaatg gcttcagccg ccataaaagt atgggcgacg
     6181 ccggtcgggc aggccgttac cgcgaccacg cgtttcggac cgccgctcgc tgcaggagca
     6241 gccgcagcag gggcgctgta aggggtcgca tggcttttgg cttcactcag aaacagttcc
     6301 ggatgcgcga cggcgcgacc aatatccccc agccaaacct ttttgccgtt caaagcattg
     6361 tcgttcggca gagattcgcc cagcacgatc gccagttcag catcattcgg attgtcgata
     6421 atttccagat ttgctttatg cgccgccgct ccaagcaggg ttttcgccat gtaagcgcga
     6481 gcctggccga gattagcgtc aattatcagc agcgttttca ttatgcctct cctgctgtca
     6541 gttaaacggt tgtaagtcga cacgcgccat cattgcggcc aactgaggac gatcggtaat
     6601 acccacattg ctctggctga ccgccagcgc ggcaaccgcc gtcgccagac gcagcgtatg
     6661 ttcgctggac tcgcgcatca gcaggccgta aatcaatccg ccaaccatgg aatcgcctgc
     6721 gccgacggta cttaccacgt caaccgccgg tggtttagcg atccattctc ctgaggcgtt
     6781 aacccacagc gcgccttccg cccccagcga aatcaccaca tgagcgatac cctgttcgcg
     6841 taacgcgtgc gccgcatcaa tcacatcttt catttccggg agcttacgac ccgcccaaat
     6901 ttccagttcg cggcgattcg gtttcaccag ccacggcgca gctttaagac cggcgactaa
     6961 cgcttcacgg ctactatcaa agataatgca tggacactgg ctgcgcagac gcgtcatcca
     7021 gtcggtgaac gcttccggac tcacgccagc cggtaagcta ccgctgacgc agaccatatc
     7081 gaactgaccc agccagctca gggagtcgtt aacaaagcgt tcccagtctg cgggagtcac
     7141 gtcaaagccg gaaaagttga agtcggtcac ttcgccatct ttttccgtca gcttcacgtt
     7201 gatgcgggtc cggccctgaa ccacctgaaa gcggttagcg atacccagtt cgctgaataa
     7261 ttgctgaaaa ccgtcctggt tatctttacc gagaaaaccg ccgacagtga cgtcgatgcc
     7321 taagtctttc agcactttgg caacgttaat gcctttgccc gccgcgtgca gacccgtggt
     7381 tttcaccagg ttcacttcgc cgcgttcgat ttcagggcaa aacccaacca gatcgtaagc
     7441 cggattaagg gtaatggtgg cgacacgcct gctcattatg cgccctcccc aagaccggcg
     7501 gcgatcgcat cgccaatcgc tttcagcgcc tgttcagcat cttcaccctg cgcggtaaag
     7561 cgcagacgat ggcctttctt cacgcctaat gccaccactt tcatcagact acgtccgttt
     7621 gccggtttgc cggttccatc aaggtttgtc acggtaattt cactgttaaa ttgtttaatc
     7681 gtattcacca gcatggtgcc cggacgggca tggagaccat gctcattacg cactacaaat
     7741 tccgcgctca gtacgtcatc cgtcagcgca tcatcactgg tcagcaacgc cagcagcgtc
     7801 gcggcgtcag cgctcagcag acgatcggct ttattgttca gcaacaggtc gccgaggcgt
     7861 tttagcacgg caatcggctg ctcgtcgttc atcgcgacag tgactaataa ggctgctttt
     7921 tcaccctcta cgtcaaacgc ctgggtcgcg cggcttaccg caacagcact gcgcaaattg
     7981 ccttccgcgc tgtcgttcag ccagatgcct tgtcccagat tcatcggact atcgttaatc
     8041 gtttttgcga cgaacgccgc atcaaccgct cccgcctctt tcagacgcgc cgcatttagc
     8101 gcctgcaatg tgaccagcga gctggcgatg acatccagcg tcatcgtctc gttatcaagt
     8161 tttaattgtt cactttgctt ctcgcccatc agcaatgcgc gcagctcttc cgccgttgtc
     8221 gcggatttca gctgttcagc cacggagtca tcgctcagca catgcgtcag ctgacgcagc
     8281 aggccaaggt gttcgtccga actggcggca ataccaatcg ccacgtaggc gacctggcct
     8341 tctccccagg taacgccctg cggaaattga aagacctgga cgccggtttt cagcacctga
     8401 tcgcgcgtgt ctgttgtacc atggggaatc gcaataccat tgccaagaaa ggttgaggtt
     8461 tgctgttcgc gcgccagcat accgtcaaca tagccgcccg ccacattccc cgcctgcgct
     8521 aacgcagcgg cgatttgccg aatggcctct tctttatttc cggcctgctc gcccggatga
     8581 atgtcctgaa ccgataactg gaacatgtgt ctcctctcct gctgaattga aacgattcag
     8641 ccactatgag aaaaaaagcg ccaatctgag ttatcaaaaa aaccagatcg cgctgaaacg
     8701 tttcaagaaa gtctggatct ttctgcttca gcacgcaaga aaagttaccg gttttgtagc
     8761 aattttttga ggtgaagcac attttttctc caacagaccc tcaatagctg acgcataaaa
     8821 ggcttcagct tttttctttc agcttgcgtc agcacgccct tgtaacaaac tggaatgcta
     8881 ttttgatttt tcgtgtcgat tttgattcag acgcctgttt attttctgac gggcagcgta
     8941 aactccgcct ctcttcacac cactgatata gaaacatgca caacagtccc gccgccgctg
     9001 cgcccaaatc gtttgacctg acgtctaccg cctttttgat cgtcgctttt ctcaccggta
     9061 ttgctggtgc gttacagacg ccgacactca gtatttttct gacggatgag gttcacgccc
     9121 gtcccggcat ggtgggtttc ttttttaccg gcagcgcggt tatcggcatt atcgtgagcc
     9181 agtttctggc gggtcgctca gataaaaaag gcgatcgcaa aaaactgatc gttttctgtt
     9241 gcgtgctggg catgttggcc tgcgtgttgt ttgcctggaa ccgcaactac tttattttgc
     9301 tgttcatcgg cgtctttctc agtagcttcg gctctaccgc caacccgcag atgtttgcgc
     9361 tggcccgaga acatgccgat cgtacaggtc gtgaagcggt gatgttcagc tcaatcctcc
     9421 gcgcccaggt ctcgttggcc tgggtcattg ggccgccgct ggcctatgcg ctggcgatgg
     9481 gttttagctt tacggtgatg tatttgagcg cggcggtagc ttttatcgtc tgcggcgtca
     9541 tggtgtggtt ctttttaccg tcaatgcgca aagatgcgcc gctggcaacc ggcacgctgg
     9601 aagcaccgcg tcgtaatcgc cgcgatacgc tgttgctgtt tgtcatctgt acgttaatgt
     9661 gggggactaa cagcctgtat atcattaata tgccgctgtt tatcatcaat gagctgcatc
     9721 ttccggaaaa acttgcaggc gtgatgatgg gcaccgccgc cgggctggag attcccacaa
     9781 tgctgattgc aggttacttc gccaaacggt tgggaaaacg cctgttaatg tgcatcgccg
     9841 ttgtcgccgg actgtgcttt tatgcgggga tgttgctggc gcacgcaccg gcaacgttgc
     9901 tcggcttgca gttgctgaac gcgatttaca tcggcattct tggcgggatt ggcatgctct
     9961 attttcagga tctcatgcca ggccaggcgg gttcagccac cacgctgtat accaatacca
    10021 ttcgcgtcgg ctggatcatt gccggttcgt tggcgggaat cgccgcagaa atctggaatt
    10081 atcatgcggt cttctggttt gcgttagtta tgattgtcgc caccatgttc tgcctggcgc
    10141 gtattaaaga tgtttaactt gcaagcctga tacttttact cttcgacaca tttcagcgca
    10201 gaatttattt ctgcgcgatg ttcatgcgcg gtcattcatt gtctttttct caatacgata
    10261 ttctgttagc gccctcttac ataagagacc ggttattgag aaaattacgc ccatcagccc
    10321 gcaaaggacc aacaccagcc gcatcttata ttttggtgta acagcaacat ctatcacttc
    10381 aatgttagca ttatttttaa ccgcctccga caacaaggat agctttgtat atgtttccgt
    10441 ttgtaacata tttttatgca cgctataacg tttaatgtca ccatcatcga tataccatgc
    10501 tgccatttta tcgacgctat ttttcagggt ggaaataata ttattgacgc tttcttccct
    10561 cccctgcgcc ttaaaaagga caagctgatt tttcgcgtca aaacttattt tatttttata
    10621 ttccgcaggc aagaaacggc taaactggtt aaggataacc gttgttttac attgaatatc
    10681 attagcatag ccacataacg cataggtagc aggcgtatcc agattaggtt tgattgtaat
    10741 actcacaacc tttgtatcat gatgcacgct cacaaaaaca tagccaatgg cgacaaaaat
    10801 aaaggtagcg atcacgatac ttagccattt tcttataagg aataaggaaa cgtcgactaa
    10861 atcaatttca ctattttctc cccgcatttc acatcccttt taaaacgcta atagtcaacc
    10921 cgaatactga aataacaaaa agcaacacca gcgtaaaaat aaacgccctg gctgcgaacg
    10981 tatatttctt cataagataa aacccacaca taagaattcg agtattttaa aggaaaataa
    11041 caacacattc a
//
LOCUS       DAJVSD010000145        10959 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.145, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000145 DAJVSD010000000
VERSION     DAJVSD010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10959)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10959)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10959
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.145"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..467)
                     /locus_tag="OQP62_002987"
     CDS             complement(<1..467)
                     /locus_tag="OQP62_002987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HCS1722482.1"
                     /translation="MAVIDLSRLPAPQIVDVPDFETLLAERKAAFVALYPVDEQDAVR
                     RTLALESEPVTKLLQESTYREILLRQRINEAAQAVMVAYSMGNDLEQLAANCNVKRLT
                     VVPADNDAVPPVAAVMEDDEALRQRIPAAFEGLSVAGPTGAYEFHARSADGRVA"
     gene            complement(454..813)
                     /locus_tag="OQP62_002988"
     CDS             complement(454..813)
                     /locus_tag="OQP62_002988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013098787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HCS1722483.1"
                     /translation="MTLYIGMSRNDGQVIADTDHLRQSVRDILLTPQGSRLARREYGS
                     LLSALIDQPQNPALRLQIMSAVYVALNRWEPRLTLDSITINGNFDGSMVVELTGQRNN
                     GAPVSLSVTTGADNGSD"
     gene            complement(810..1388)
                     /locus_tag="OQP62_002989"
     CDS             complement(810..1388)
                     /locus_tag="OQP62_002989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HCS1722484.1"
                     /translation="MNAQLTEIMRLITNLIRTGTVTEVDRENWLCRVKVGELETNWIN
                     WLTLRAGGARTWWCPSPDEQVVVLSMGGNLETAFVLPAIYSNQFAPPSDSVDGCVTEY
                     PDGGWFEYEPATGRWHVRGIKSMVIEAADNITLKTGEFVVEADTTRINSEVVINGGVT
                     QGGGAMSSNGVVMDKHGHTGVKSGGDTSGGPV"
     gene            complement(1457..1903)
                     /locus_tag="OQP62_002990"
     CDS             complement(1457..1903)
                     /locus_tag="OQP62_002990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HCS1722485.1"
                     /translation="MDELQKVDDWLTALLANLEPAARNRMMRQLAQQLRRTQQQNIRL
                     QRNPDGIGYEPRRVTARSKKGRIKRQMFAKLRTTKYLKTAASADSASVQFDGKVQRIA
                     RVHHYGLRDRVSRKGPEVRYAERRLLGVNDEVETITRDTLLRWLAG"
     gene            complement(1896..2327)
                     /locus_tag="OQP62_002991"
     CDS             complement(1896..2327)
                     /locus_tag="OQP62_002991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1722486.1"
                     /translation="MNKPQSLRSALNKVVAYVRDNPDKLHLFVDNGSLVATGASSMSW
                     EYRYTLNVVIEDFSGDQNLLMAPVLLWLSTSQPDAINNPDLREKLFTFEVDILRNDVC
                     DISMNLQLTERVLVSTDGSVSSVEAVPEPDEPEEMWTVKRG"
     gene            complement(2423..2851)
                     /locus_tag="OQP62_002992"
     CDS             complement(2423..2851)
                     /locus_tag="OQP62_002992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysB family phage lysis regulatory protein"
                     /protein_id="HCS1722487.1"
                     /translation="MMRALAVVLALALAALGWQSWRLNNASHTIETQGAALKSKTQEL
                     TKKNSQLIGLSILTETNSREQTRLYAAAEQTTALLRSRQRRIEELKSENEDLRRWADT
                     PLPADIIRLRDRPALAGGAAYREWLSQSDAVPPGKVSAAQ"
     gene            complement(2848..3225)
                     /locus_tag="OQP62_002993"
     CDS             complement(2848..3225)
                     /locus_tag="OQP62_002993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010835207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HCS1722488.1"
                     /translation="MKKKVMSVFFQLAWAALLVISLLYPRSGAPVLVGASVQVSCFLA
                     WLLAALCAVGWFAGDRARDEARAALIKFRAHPVKPVRTWAIRLLIVLCLAFSGWVITL
                     VFYLLTLVLYQIARSQLHEPMAA"
     gene            complement(3230..3739)
                     /locus_tag="OQP62_002994"
     CDS             complement(3230..3739)
                     /locus_tag="OQP62_002994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001069913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HCS1722489.1"
                     /translation="MNTSIVKCCLVGAVLAIAATLPGFQSLHTSVEGLKLIADYEGCR
                     LQPYQCSAGVWTDGIGNTSGVVPGKTITERQAAQGLITNVLRVERALEKCVVQPMPQK
                     VYDAVVSFAFNVGTGNACSSTLVKLLNQRRWADACHQLPRWVYVKGVFNQGLDNRRAR
                     EMAWCLKGA"
     gene            complement(3720..3935)
                     /locus_tag="OQP62_002995"
     CDS             complement(3720..3935)
                     /locus_tag="OQP62_002995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722490.1"
                     /translation="MTLERISAFITYCIAVLLAWLGDLSLKDASTVGGVLIGVLMLAI
                     NWYYKHQSFKLLRGGKISRGEYEYFNR"
     gene            complement(3939..4142)
                     /locus_tag="OQP62_002996"
     CDS             complement(3939..4142)
                     /locus_tag="OQP62_002996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HCS1722491.1"
                     /translation="MKVRAHQYDTVDALCWRHYGRTQGVTEQVLQANPGLAEYGPFLP
                     HGLQVELPDITASTTAQTVQLWD"
     gene            complement(4142..4606)
                     /locus_tag="OQP62_002997"
     CDS             complement(4142..4606)
                     /locus_tag="OQP62_002997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HCS1722492.1"
                     /translation="MKFVAPEQAPEQAEVIKNTPFWPDVNLSEFRSVMRTDGTVTQPR
                     LKQVVLTAISEVNAELYDFRNRQQMLGWRTLAEVPAEMLDGKSERIRHYHNAVFCWAR
                     AVLNERYQDYDATASGVKRGEELAEASGDLWRDARWAISRVQDAPHCTVELI"
     gene            complement(4700..5350)
                     /locus_tag="OQP62_002998"
     CDS             complement(4700..5350)
                     /locus_tag="OQP62_002998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase endonuclease subunit"
                     /protein_id="HCS1722493.1"
                     /translation="MSLSPARQHRLRIQAEQAAREGGSVRHASGYDLMLLQLAEDRRR
                     LKGVQSTVKKAEIKVELLPKYSAWAEGVLAAGGAQQDDVLMYVMLWRIDAGDYAGALE
                     IGRHALRHGWVMPLGNRNVQTVLAEEMADAAQSALLAAAGFDADPLLQTLDLTTDLDM
                     PDQSRARLHKAIGAVLSESNPASALNHLNHALQLDPRCGVKKEKQQLERRLRNDSR"
     gene            complement(5354..6418)
                     /locus_tag="OQP62_002999"
     CDS             complement(5354..6418)
                     /locus_tag="OQP62_002999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006894826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein, P2 family"
                     /protein_id="HCS1722494.1"
                     /translation="MKKKTRFAFNAYLQQLARLNGVDVEELSSKFTVEPSVQQTLEDH
                     IQQSAAFLTLINITPVTEQSGQLLGLGVGSTIAGTTDTTTKEREPTDPTLMEDVEYKC
                     EQTNFDTVLTYAKLDLWAKFQDFQVRIRNAIVKRQALDRIMIGFNGVKRAKTSNRAEN
                     PLLQDVNKGWLQKIREDAPDHVMGSKTAEDGTTTAEPVKVGPGGKYVNLDAVVMDTVN
                     ELIDVEYQDDDELVVVCGRELLSDKYFPLVNKEQDNSEKIAADLIISQKRMGGLQAVR
                     APFFPANALLITRLDNLSIYWQEDTRRRSVIDNPKRDRIENFESVNEAYVVEDYRCAA
                     LVENIEIGDFSAPAAPESGE"
     gene            complement(6435..7268)
                     /locus_tag="OQP62_003000"
     CDS             complement(6435..7268)
                     /locus_tag="OQP62_003000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HCS1722495.1"
                     /translation="MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALIN
                     LEHIKSYLPESTFNRYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKL
                     FTSMEVSTKFADTGKAYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFS
                     EAVETLIELEEAQDEKPSLFASVTALFTKKEQTDDARFSDVHKAVELVATEQQNLSER
                     TDKSLAENGERLSALESSLQEQQTAFAELQQQLSREDSRKDYRQRAPGGDAPAGTLTN
                     C"
     gene            7411..9177
                     /locus_tag="OQP62_003001"
     CDS             7411..9177
                     /locus_tag="OQP62_003001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase ATPase subunit family protein"
                     /protein_id="HCS1722496.1"
                     /translation="MNTTLTPADLDPRRQAMLLYFQGYRVARIAEMLGEKVATVHSWK
                     KRDKWGDYGPLDQMQLTTAARYCQLIMKEQKEGKDFKEIDLLARQSERHARIGKFNDG
                     GNEADLNPKVANRNKGPRRQPEKNVFSDEQIEKLEEVFHASMFDYQRHWFEAGKINRI
                     RNLLKSRQIGATFYFAREALIDALLTGRNQIFLSASKAQAHVFKQYIIDFAKEVEVEL
                     KGDPMVLPNGAALYFLGTNARTAQSYHGNLYLDEYFWIPKFQELRKVASGMAIHKKWR
                     QTYFSTPSSLTHSAYPFWSGALFNRGRAKADKVDIDLTHSNLARGLLCPDGQYRQIVT
                     VEDAVRGGCNLFDLDQLRMEYSPDEYQNLLMCEFIDDLASVFPLSELQACMVDSWEVW
                     TDFQALALRPFGWREVWIGYDPAKGTQNGDSAGCVVIAPPTVPGGKFRILERHQWRGM
                     DFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYLNVKDFFPAVREFVYNPNVKNALVL
                     KAYDIISHRRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHADLAWATM
                     HALFNEPLQGEAANTSNIVEIF"
     gene            9177..10220
                     /locus_tag="OQP62_003002"
     CDS             9177..10220
                     /locus_tag="OQP62_003002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011233140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HCS1722497.1"
                     /translation="MSEHDALTSTAPVQEAEQQKNTTHAEAFSFGDPIPVLDRRELLD
                     YVECVQMDRWYEPPVSFDGLARTYRAAVHHSSPIAVKRDILSSTYIPHRLLSQQAFAR
                     FVQDYLVFGNAYLEKRTNRLGGVLSLEPALAKYTRRGLDLDTYWFVQYDLTTQPYEFT
                     QGNIFHLMEPDINQEIYGLPGYLSAIPSTLLNESATLFRRKYYINGSHAGFIMYMTDA
                     AQNQEDVNNIRQAMKSAKGPGNFRNLFMYSPNGKKDGIQIIPLSEVAAKDEFLNIKNV
                     SRDDMMAAHRVPPQMMGIIPNNTGGFGDVEKASRVFVRNELIPLQERIKELNEWLGDE
                     VIRFAKYTLDDIS"
     gene            complement(10269..>10959)
                     /locus_tag="OQP62_003003"
     CDS             complement(10269..>10959)
                     /locus_tag="OQP62_003003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722498.1"
                     /translation="QLRLKWMRLKIRTSPEAVFDFIKNTPYSDAIGAGFTKYETIHNG
                     MTATFNKKSVVLEPIADPFGEVLEFERVVFDQISFSIQTLSNKICLLTFYNPPKTVKP
                     FIDFLSQAEGLNVAYGNLTVDLKAFMRVIRENFGVKVFGISKVKVSNLPVTEKTRACL
                     ELNSSGDALHDLKIFVGDSEFKLDKIKAGGFYLDSKISFELTSGASAVVPDEHFSIFN
                     DAISCMEIDKF"
BASE COUNT         2402 a         3269 c         2905 g         2383 t
ORIGIN      
        1 gccacacgtc cgtccgcact tctggcgtga aattcatagg ctcccgtcgg gccagcaacc
       61 gacaacccct caaacgcagc agggatgcgc tggcgtagcg cctcatcatc ttccatcact
      121 gcggcgaccg gcggtactgc atcattatca gcaggcacta cagtcaggcg tttcacgttg
      181 cagttggctg ccagctgctc aagatcattt cccatcgaat aggccaccat caccgcctgc
      241 gcagcctcgt taatacgctg gcgcagcagg atttcgcggt atgtgctttc ctgcagcagc
      301 ttggtgacgg gttcagattc cagcgccagc gtgcgccgca ccgcgtcctg ttcatccaca
      361 ggataaagag ccacaaaagc ggccttgcgc tcagccagca gcgtctcaaa atccggcacg
      421 tccactatct gcggcgcggg cagccgggaa aggtcaatca ctgccattgt ctgctcctgt
      481 agttaccgaa agtgaaaccg gcgcgccgtt gttgcgctgc ccggtaagct caaccaccat
      541 agagccgtca aaattgccgt tgatggtgat ggagtccagc gtaaggcgcg gctcccagcg
      601 gttcagcgcc acatagactg cagacataat ctgcaggcgc agtgccgggt tctgcggctg
      661 gtcaatcagg gctgacagta gggagccata ttcccggcga gcaagacgac tgccctgcgg
      721 cgtcagcaga atatcccgca ccgactggcg cagatggtcg gtatctgcaa tgacctgccc
      781 gtcattcctg ctcataccga tatacaacgt cataccggac ctcccgatgt atccccgcct
      841 gacttaacgc cagtgtgacc gtgtttatcc atcacgaccc cgttagaact cattgcgccg
      901 ccgccctggg tgacgccgcc gttgatcacc acctcgctat taatgcgtgt tgtgtcagcc
      961 tccaccacaa actcaccggt ttttagggtg atattgtccg ccgcctcgat caccatggat
     1021 ttgatacccc ggacatgcca cctcccggtg gcgggttcgt actcaaacca gcccccgtcc
     1081 gggtactccg tcacgcagcc gtccacagaa tccgacggcg gcgcaaactg attggagtag
     1141 atggcgggca gcacaaaagc ggtttccaga ttgccgccca tgctcagcac caccacctgc
     1201 tcatccggcg acgggcacca ccatgtacgg gcaccaccgg cacgcagcgt cagccagtta
     1261 atccagttag tttcaagctc gcccactttc acccggcaca gccagttttc ccggtccact
     1321 tcggtcacgg tgccggtgcg gatcaggttg gtgataaggc gcatgatttc ggtcagttgt
     1381 gcattcataa cgaaaggttg ccatcagagg gaaaagggag gcagcgcggg cgcttgtgcc
     1441 agcagtggca caaagatcac cccgccagcc agcgcagcag agtgtcacgg gtgatggttt
     1501 ccacctcatc attcacgccc aaaaggcggc gctctgcgta gcggacctcc gggccttttc
     1561 ggctgacgcg atcacgcagg ccgtaatggt gaacacgggc aatgcgctgc accttgccat
     1621 caaactgcac gctggcggag tccgcactgg cggcggtttt caggtatttt gtggtgcgaa
     1681 gctttgcaaa catctggcgt ttgatacgtc ccttcttgct gcgggctgtc accctgcgcg
     1741 gctcatagcc gatgccgtca ggattacgct gcagcctgat gttctgctgc tgcgtccggc
     1801 gcaactgttg cgccagttgc cgcatcatac ggttgcgtgc ggcaggctcc agattcgcca
     1861 gcagcgccgt cagccagtca tcaaccttct gcagctcatc cacgtttcac cgtccacatt
     1921 tcttcgggtt cgtccggctc cggcaccgct tcaacgcttg acacgctgcc gtcagtgctg
     1981 accagcacac gctcagtcag ttgcaggttc atgctgatat cgcacacatc gtttcgcaga
     2041 atatccactt caaaggtgaa cagtttttcg cgcagatccg ggttgttgat ggcgtccggc
     2101 tggctggtac tgagccacag caggactggg gccatcagca gattctggtc gccgctgaaa
     2161 tcctcgatca ccacgttcag ggtgtagcgg tattcccatg acatggaact ggctcctgtt
     2221 gccaccagtg atccgttatc aacgaaaagg tgcagcttgt ccgggttgtc ccggacatag
     2281 gcaaccactt tattcagggc gctgcgtaag gactgcggtt tgttcactgt ctcgctcctg
     2341 acacgcaata attgtgtcca ctttgtcagc acagaccgcc caggcggcct cggtttcatc
     2401 cagcaccgca ttcagatcgc cgttactgcg cggcgctgac ctttccaggc ggcactgcgt
     2461 cactctggga cagccactca cggtaagctg cacctccggc gagggccggg cggtcccgca
     2521 acctgataat gtcagcaggc aaaggagtgt cagcccagcg gcgtaaatcc tcgttttcac
     2581 tttttagctc ctcgatccgg cgctggcgac ttcgcaacag tgcggtggtc tgctccgcag
     2641 ccgcataaag ccgcgtctgc tcccggctgt tggtttcggt cagaatggac aggccgatca
     2701 gctggctgtt tttcttcgtc agctcctgcg ttttgctttt cagcgccgcg ccctgcgttt
     2761 cgatggtgtg gctggcattg tttaaccgcc acgactgcca gcccagcgcc gcaagtgcca
     2821 gcgccagcac taccgccagc gcacgcatca ggccgccatc ggctcatgaa gctgcgagcg
     2881 ggcaatctga tacaaaacca gcgtcagcag gtaaaacacc agggtgatca cccatcccga
     2941 aaacgccagg cacagaacaa taagcagcct gatagcccat gtacgcacgg gttttacggg
     3001 gtgcgccctg aatttgatta atgccgccct ggcctcatcg cgcgcccgat ctccggcgaa
     3061 ccacccgaca gcgcacagcg cagcaagcag ccaggcgagg aagcatgaca cctggacaga
     3121 cgcaccaacc agaaccggcg caccgctgcg cggatacagc aggctgatta ccaacagcgc
     3181 agcccatgcc agctggaaaa aaacgctcat gactttcttt ttcattccgt taggctcctt
     3241 ttaagcacca ggccatttcc cgcgcgcggc ggttgtccag cccctgatta aacacacctt
     3301 tgacatatac ccagcgcggc agctgatggc aggcatccgc ccagcgccgc tggttcagca
     3361 acttaaccag cgtggagctg caggcgttgc cggtgcccac gttgaaagca aacgacacca
     3421 ccgcgtcata gaccttttgc ggcatcggct gcaccacaca tttttccagc gcccgctcca
     3481 cgcgcagcac attggtgata agtccctgcg ccgcctgccg ttccgtgatg gtttttccag
     3541 gcaccacacc ggacgtattg ccgatcccgt cagtccagac gcccgcgcta cactgataag
     3601 gctgcaggcg gcatccctcg taatcggcga tcagtttcag cccctcaacg gaggtatgaa
     3661 gcgactgaaa tccgggcagc gtggctgcga tagccagcac tgccccgaca aggcagcact
     3721 taacgattga agtattcata ttccccccgc gaaatcttgc cgccacgtaa caatttgaaa
     3781 gactggtgtt tgtagtacca gttgatagcc agcatcagca caccaatcag tacgccgcca
     3841 accgttgacg catccttgag cgacagatcg cccagccatg ccagcagcac ggcaatgcag
     3901 taagtgataa aggcgctgat tcgttcaagc gtcataattc agtcccatag ctggacggtc
     3961 tgcgccgtgg ttgacgccgt aatgtccggc agctccacct gcagcccgtg cggtaaaaat
     4021 gggccgtact cagccagccc cggatttgcc tgcagaacct gctcagtgac accctgcgtg
     4081 cgcccgtaat gacgccagca aagcgcgtcc accgtgtcat actgatgcgc acgcactttc
     4141 atcagataag ctccaccgta cagtgcggtg catcctgcac ccggctgatg gcccagcggg
     4201 catcacgcca cagatcgccg ctggcctccg ccagctcctc ccctcgcttc acgcctgacg
     4261 ccgtggcgtc atagtcctga taacgctcat taagcacagc gcgcgcccag caaaaaacag
     4321 cgttgtggta gtgccggata cgctcgcttt taccgtccag catttctgcg ggaacctcag
     4381 caagtgtccg ccagcccagc atctgctgac ggttgcggaa gtcgtacagc tcagcgttaa
     4441 cctcagagat cgccgtcagc acgacctgct ttaaacgcgg ctgcgtcacc gtgccgtcag
     4501 tgcgcatcac actgcgaaat tccgacaggt tcacatcagg ccagaacggc gtatttttga
     4561 tgacctccgc ctgttccggt gcctgttctg gcgcaacaaa cttcatgcgg cgttctcctg
     4621 aataagtggg cggtggacgg aattttgatg tggcagtgcc tttcgccatc ccgtgccgcc
     4681 cgtgcgcggg gcacgttcgt tagcggctgt cattgcgcag tctgcgctcc agctgctgct
     4741 tttctttttt cacaccgcag cggggatcaa gctgcagcgc atggttaagg tgattcaggg
     4801 cagacgccgg gttgctttcg ctcagtacag caccgatggc tttatgcagg cgcgcccgcg
     4861 actggtccgg catatccaga tcggtggtca ggtccagcgt ctgcagaagc ggatcggcat
     4921 caaaaccggc agcggcaagc agagcgcttt gcgccgcgtc tgccatttct tctgccagca
     4981 cggtctgcac gttacggttg cccagaggca tcacccagcc atggcgcagc gcatggcgcc
     5041 cgatttcgag cgcaccggca taatcaccgg cgtcgatacg ccacagcatc acgtacatca
     5101 gcacgtcatc ctgctgcgca cctccggcag ccagcacgcc ctccgcccag gcggaatatt
     5161 tcggcagcag ttccaccttg atttccgcct ttttcaccgt ggactggacg cccttgaggc
     5221 ggcggcggtc ttctgccagc tgcagcagca tcaggtcata gcccgacgca tggcgaacac
     5281 tgccgccctc acgggcggcc tgttcagcct gaatgcgcag gcggtgctgc cgtgcgggac
     5341 tcaggctcat gcgttattcc ccactttccg gtgcggcagg cgcgctgaaa tcaccgattt
     5401 cgatgttttc taccagcgcc gcgcagcggt agtcctcgac cacatacgcc tcgttgacgg
     5461 attcaaagtt ttcaatccgg tcgcgtttcg ggttgtcgat aactgaacgg cggcgggtgt
     5521 cttcctgcca gtagatggac aggttatcca gacgggtgat cagcagggca tttgccggga
     5581 agaaaggcgc gcgcacagcc tgcaggccgc ccatgcgttt ctggctgatg atcagatcgg
     5641 cggcgatttt ctcgctgttg tcctgctctt tgttgaccag cgggaaatac ttgtcagaca
     5701 gcagttcacg tccgcagaca acaaccagct cgtcatcatc ctgatactcc acatcgatca
     5761 gctcgttgac ggtatccatc accaccgcgt caagatttac atacttacca cccggaccta
     5821 cttttactgg ttctgcagta gtggtgccgt cttctgcggt tttgctgccc atgacgtgat
     5881 ccggcgcgtc ttcgcggatt ttctgcagcc agcctttatt gacgtcctgc agcagcgggt
     5941 tttcagcacg gttggaggtt ttggcgcgct tcacgccgtt aaagccgatc atgatgcggt
     6001 ccagcgcctg acgcttgacg atggcgttgc ggatacgcac ctggaagtcc tggaatttcg
     6061 cccacaggtc cagttttgcg taggtcagca ccgtatcaaa gttggtctgc tcgcatttgt
     6121 attccacgtc ttccatcagc gtcggatcgg taggctcgcg ctctttggtg gtggtatcgg
     6181 tggttccggc aatggtgctg ccaacgccca gccccagcaa ctgaccggac tgctcagtga
     6241 ccggcgtgat gttaatcagc gtcaggaaag cagcagactg ctggatgtgg tcttccagag
     6301 tctgctgcac ggacggctcc acggtgaact tgctggagag ttcttcaaca tccacaccat
     6361 tcaggcgcgc cagctgctgc aggtaagcgt taaaggcaaa gcgggttttc tttttcatcg
     6421 ggttttatgc tccatcagca attggtcagg gtgcctgccg gtgcgtcacc gcccggcgcg
     6481 cgctggcggt aatccttgcg gctgtcttcg cggctcagtt gctgctgtag ctcggcaaag
     6541 gcggtctgct gttcctgcag ggaggactcc agcgcggaaa ggcgctcacc gttttcagcc
     6601 agggatttat cagtgcgctc gctcaggttc tgctgctcgg tggcgacaag ttccacggct
     6661 ttatgcacat cggagaaacg cgcatcgtcg gtctgctctt ttttggtgaa cagcgcggtg
     6721 acgctggcaa agagggacgg cttttcgtcc tgggcttctt ccagttcgat cagcgtttca
     6781 accgcttccg aaaacaggtt ttcagggttc tgcttacggt ttgccagcgg gttatgtgcg
     6841 gcgctggcgc tgaaagccag catttcggtg ccaaggctcg caggatcgtc cgtcgcaccc
     6901 agccccacaa ggtaggcttt gccggtgtcg gcaaacttcg tgctgacctc catggaggtg
     6961 aaaagcttct ggcctttttt caccagttcc accagggcgt cagtgggttc gatatcggca
     7021 taaagtgcca tcttgcccgc cagcgggccg tcctggattt cttctgcaac cagccccgtc
     7081 accctgccat agcggttaaa agtgctctcc ggcagataag acttgatgtg ctcaaggtta
     7141 atcagcgcgg tatagaccgt cgggttgtag ctggcagcca tctgtaccag ccattcacgc
     7201 tggatctcgc gcccgtcagt ggtggcacct tccaccccga tgcggaaacg ctttgctttc
     7261 actgtcatga gccgtgctcc gttagaaata acttactgga gtcttatgtt tgcggtgatg
     7321 gggggagtga gacaacgcgc tgtatttgta cggtaaacca cacaaaccgc agccggggaa
     7381 agccgccatc caaggccgta tgtttgggcc atgaacacga cactgacccc cgcagacctc
     7441 gatccccgtc ggcaggccat gctgctgtac tttcagggat accgcgtagc ccgcattgct
     7501 gaaatgctgg gcgaaaaagt tgcaaccgtt cacagctgga aaaaacgcga caagtggggc
     7561 gactatgggc cgctggatca gatgcagctc accaccgccg cacgttactg ccagctcatc
     7621 atgaaggagc agaaagaagg gaaagacttc aaggaaattg acctgctggc gcgccagtca
     7681 gagcgtcacg cccggatcgg aaaatttaac gacggcggga acgaagcaga tttaaacccg
     7741 aaagtagcca accgtaacaa aggtccgcgc aggcagccgg aaaagaacgt tttctccgac
     7801 gaacagatcg aaaagctgga agaagtcttc cacgcctcaa tgttcgacta tcagcgtcac
     7861 tggtttgaag caggaaaaat aaaccgcatc cgtaatctgc tcaagtcgcg ccagattggc
     7921 gccacgtttt attttgcccg tgaagcattg attgacgccc tgctgaccgg acgcaaccag
     7981 attttccttt ctgccagtaa ggcacaggcg cacgtcttta agcagtacat catcgacttt
     8041 gcaaaagaag ttgaggtgga gctgaaaggc gatcctatgg tgctacccaa tggcgcagca
     8101 ttgtactttc tcggcaccaa cgcccgtacg gcgcagagct accacggcaa cctgtacctt
     8161 gatgaatatt tctggatacc gaaattccag gagctgcgca aggttgcctc cggtatggcc
     8221 attcacaaga aatggcgaca aacctacttt tccacgccgt ccagcctgac ccacagtgcc
     8281 tatccgttct ggtccggcgc gctgtttaac cggggccgag ccaaagcgga caaggtagat
     8341 attgacctga cccacagcaa ccttgcacgc ggcctgctct gccctgacgg acagtaccgc
     8401 cagatcgtca ccgtggagga tgcggtgcgc ggcggctgta acctgttcga cctcgaccag
     8461 ctgcgcatgg agtacagccc ggacgaatac cagaacctgc tgatgtgcga atttattgac
     8521 gatctggcgt cagtattccc gctcagcgaa ctgcaggcgt gcatggtgga cagctgggaa
     8581 gtctggaccg attttcaggc gctggcgctg cgcccgtttg gctggcgcga agtctggatc
     8641 ggttatgacc cggcgaaagg tacgcagaac ggtgacagcg caggttgtgt ggttattgct
     8701 ccgcccactg taccgggcgg aaagttccgc attctggagc gtcatcagtg gcgtgggatg
     8761 gacttccgcg cccaggctga cgccattaaa aagctgacac agcagtacaa cgtgacctat
     8821 atcggcatcg actcgaccgg cgtcggtcac ggtgtttacc tgaacgtaaa agactttttt
     8881 ccagcagtac gagagtttgt ctacaacccc aacgtcaaaa acgccctggt gctcaaggcg
     8941 tacgacatta tcagccaccg ccgtctggag tttgacgccg ggcataccga cattgcgcag
     9001 tcctttatgg ctatccgccg ggccaccacc gccagcggca accgcccaac ctatgaagcc
     9061 agccgcagcg aagaagccag ccacgcagat ttggcctggg caacgatgca cgcactgttt
     9121 aacgaaccgc tgcagggcga agccgccaat accagcaata ttgtggagat tttttgatga
     9181 gtgaacacga cgccctgacc agcaccgcgc cagtgcagga ggccgaacag cagaagaata
     9241 caactcacgc cgaagcgttc agctttggcg atccgatccc ggtactggac cgccgcgaac
     9301 tgctggacta tgtggaatgc gtacagatgg acagatggta tgagccgcca gtaagctttg
     9361 acgggctggc gcgaacctac cgcgccgctg tgcatcacag ctcaccgata gcggttaagc
     9421 gtgacattct cagcagtacg tacatcccgc accgcctgct cagccagcag gcttttgccc
     9481 gtttcgtcca agattatctg gtgttcggta acgcctatct ggaaaagcgc accaaccggc
     9541 tcggcggcgt tctctcactg gagccagcac tggcgaagta cacacgccgt ggcttggacc
     9601 tcgacaccta ctggtttgtg cagtacgacc tgaccacgca gccctatgaa tttacacagg
     9661 gcaacatctt tcaccttatg gagccggata ttaaccaaga gatttacggg ctgcccggct
     9721 atctctccgc cattccgtca accctgctca acgagtccgc aacgctgttc cgccggaagt
     9781 attacatcaa cggcagccat gcggggttca tcatgtatat gaccgatgca gcacagaatc
     9841 aggaggacgt gaacaatatc cgccaggcaa tgaaaagcgc caaagggccg ggcaacttcc
     9901 gcaacctgtt tatgtactcg cccaatggta aaaaggacgg catccagatc atcccgttgt
     9961 cggaagttgc ggcaaaggat gagtttctta acatcaagaa cgttagccgc gatgacatga
    10021 tggcagcgca ccgcgtgcca ccgcagatga tgggcatcat ccccaacaat accggcggct
    10081 ttggtgatgt ggaaaaggcc agccgcgtgt ttgtacgaaa tgaattaata ccccttcaag
    10141 aaaggattaa agaactcaat gaatggttag gggatgaagt cattagattt gcgaaatata
    10201 cactcgacga cataagctaa ttttattata aaagatggtg ccatcatata acgatgacac
    10261 catcgcccct aaaatttatc aatttccata catgaaatag catcattgaa aatcgaaaaa
    10321 tgctcatcag gaaccactgc agaagcccca ctggttaatt caaaactaat ctttgaatca
    10381 aggtaaaacc ctcctgcttt tattttatcg agcttgaatt cactatcccc aacaaaaatc
    10441 ttcaaatcat gcaaagcatc gccgctagaa ttcaattcca aacatgctct tgttttttca
    10501 gtaacaggaa gatttgacac cttcactttg gaaatgccaa acacctttac gccgaaattt
    10561 tctcgaatga ccctcatgaa agctttaaga tctacggtta aattcccata agcaacattt
    10621 aacccttcgg cctgagacaa aaaatcgata aaaggtttaa ctgtttttgg aggattgtaa
    10681 aaagttaaca aacatatctt attgctgagg gtttggatag aaaaactaat ctgatcaaat
    10741 acaacccttt cgaattccag cacctcacca aatggatcgg caatcggctc taaaacaaca
    10801 gattttttat tgaaagttgc agtcatacca ttatgaatgg tttcatactt agtaaaacca
    10861 gcaccaatag catcagaata aggcgtgttt ttgataaaat caaagacagc ttcagggctg
    10921 gtcctgattt tcaatctcat ccacttcaat cttaattgt
//
LOCUS       DAJVSD010000146        10898 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.146, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000146 DAJVSD010000000
VERSION     DAJVSD010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10898)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10898)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10898
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.146"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(11..730)
                     /locus_tag="OQP62_003004"
     CDS             complement(11..730)
                     /locus_tag="OQP62_003004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2884 domain-containing protein"
                     /protein_id="HCS1722499.1"
                     /translation="MMRKTLLAAVLTFTAMAAHADYKCSVTPRDDVILSPQTVQVKGE
                     NGNLVITPDGNVMYNGKQYTLSAAQREQAKDYQAELRSALPWIDEGARSRVEKGRVAL
                     DKIIAKEVGESSNMRSRLTKLDAQLKAQMNRIIEHRTDGLTFHYKAIDQVRADGQQLV
                     NQAMGGILQDSINEMGAKAVLKGGGNPLQGVMGSLGGLQTAIQNEWKNQEKDFQQFGK
                     DVCSRVVTLEDSRKALVGSLK"
     gene            complement(780..1106)
                     /locus_tag="OQP62_003005"
     CDS             complement(780..1106)
                     /locus_tag="OQP62_003005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggL family protein"
                     /protein_id="HCS1722500.1"
                     /translation="MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKTVDD
                     FINDVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLEARNLEEVRTSEL
                     FDVWWD"
     gene            complement(1106..1825)
                     /gene="trmB"
                     /locus_tag="OQP62_003006"
     CDS             complement(1106..1825)
                     /gene="trmB"
                     /locus_tag="OQP62_003006"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HCS1722501.1"
                     /translation="MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPV
                     MGVEFSEAPVDFATLFGREAPVTLEIGFGMGASLVAMAKARPEQNFLGIEVHSPGVGA
                     CLASAHEEGVENLHVMCHDAVEVLHKMIPDNSLSMVQLFFPDPWHKARHNKRRIVQVP
                     FAELVLSKLKLGGVFHMATDWEAYAEHMLEVMSSIDGYKNLSESNDYVPRPESRPVTK
                     FEQRGHRLGHGVWDLMFERVK"
     gene            1980..3032
                     /gene="mutY"
                     /locus_tag="OQP62_003007"
     CDS             1980..3032
                     /gene="mutY"
                     /locus_tag="OQP62_003007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HCS1722502.1"
                     /translation="MQASQFSAQVLDWYDKYGRKTLPWQINKTPYKVWLSEVMLQQTQ
                     VTTVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGG
                     EFPQTFAEIAALPGVGRSTAGAILSLALGKHYPILDGNVKRVLARCYAVSGWPGKKEV
                     ENTLWTLSEQVTPARGVERFNQAMMDLGAMVCTRSKPKCTLCPLQNGCIAAAHESWSR
                     YPGKKPKQTLPERTGYFLLLQHNQEIFLAQRPPSGLWGGLYCFPQFASEDELREWLAQ
                     RHVNADNLTQLNAFRHTFSHFHLDIVPMWLPVSSLDACMDEGGALWYNLAQPPSVGLA
                     APVERLLQQLRTGAPV"
     gene            3060..3335
                     /locus_tag="OQP62_003008"
     CDS             3060..3335
                     /locus_tag="OQP62_003008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HCS1722503.1"
                     /translation="MSRTIFCTYLQRDAEGQDFQLYPGELGKRIYNEISKDAWAQWQH
                     KQTMLINEKKLNMMNAEHRKLLEQEMVSFLFEGKDVHIEGYTPEDKK"
     gene            3448..4533
                     /gene="mltC"
                     /locus_tag="OQP62_003009"
     CDS             3448..4533
                     /gene="mltC"
                     /locus_tag="OQP62_003009"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltC"
                     /protein_id="HCS1722504.1"
                     /translation="MMKKLLALAVIAPLLISCSSSTKKGETYNEAWVKDTNGFDILMG
                     QFANNIENLWGYKEVLIAGPKDYVKYTDQFQTRSHINFDDGTITVETIAGTEPTAHLR
                     RAIIKTLLMGDDPTSVDLYSDVDDIKISKEPFLYGQVLDNTGQPIRWEGRATTFADYL
                     LKTRLKSRSNGLRIIYSVTINLVPNHLDKRAHKYIGMVRQASRKYGVDESLILAIMQT
                     ESSFNPYAVSHADALGLMQVVQHSAGKDVFRSQGKSGTPSRNFLFDPASNIDTGTAYL
                     AMLNNVYLSGIENPTSRRYAVITAYNGGAGSVLRIFSNDKIQAANMINRMSPGDVYQI
                     LTTRHPSAESRRYLYKVNSAQRSYRRR"
     gene            4750..6006
                     /locus_tag="OQP62_003010"
     CDS             4750..6006
                     /locus_tag="OQP62_003010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease"
                     /protein_id="HCS1722505.1"
                     /translation="MNLKLQLKILSFLQFCLWGSWLTTLGSYMFVTLKFDGASIGAVY
                     SSLGIAAVFMPTLLGIVADKWLSAKWVYALCHVVGAITLFMAAEVTTPGAMFFVILLN
                     SLAYMPTLGLINTISYYRLQSAGMDIVTDFPPIRIWGTIGFILAMWGVSFSGFELSHM
                     QLYIGATLSVLLVLFTFTLPHIPVANQQKNQSWTSMLGLDAFALFKNKRMAIFFIFSM
                     MLGAELQITNMFGNTFLHSFDKDPLFASSFIVQHASVMMSISQISETLFILTIPFFLS
                     RYGIKNVMLISIVAWMLRFGLFAYGDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVE
                     KEVRPEIRASAQGMFLMMTNGFGCILGGIVSGKVVEYYTQNGITDWQTVWLIFAGYSL
                     VLAFAFVALFKYKHVRVPASSQPVAH"
     gene            complement(6068..8192)
                     /locus_tag="OQP62_003011"
                     /pseudo
     CDS             complement(6068..8192)
                     /locus_tag="OQP62_003011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462030.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase"
     gene            8617..9324
                     /locus_tag="OQP62_003012"
     CDS             8617..9324
                     /locus_tag="OQP62_003012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HCS1722506.1"
                     /translation="MVIGPFINAGAILFGGVIGALLSQRLPERIRVSMTSIFGLCSLG
                     IGILLVMKCANLPVMVLATLVGALIGEFCLLEKGINGAVAKIQQLFMASGKKPTHDSF
                     IQSYVAIIVLFCASGTGIFGAMHEGMTGDPNILIAKSFLDFFTAIIFACSLGIAVSAI
                     CAPMLIIQLTLAACATLILPLTTPAMMGDFSAVGGLLLVATGLRVCGIKMFPVVNMLP
                     ALLLAMPISAAWAMFFA"
     gene            9430..9505
                     /locus_tag="OQP62_003013"
     tRNA            9430..9505
                     /locus_tag="OQP62_003013"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9463..9465,aa:Phe,seq:gaa)
     gene            9666..10479
                     /locus_tag="OQP62_003014"
                     /pseudo
     CDS             9666..10479
                     /locus_tag="OQP62_003014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009114529.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
BASE COUNT         2566 a         2933 c         2726 g         2673 t
ORIGIN      
        1 aaaggaaaga ttacttcagg ctgccaacca gcgctttgcg gctatcttct aaggtcacta
       61 cgcggctaca gacatctttg ccaaactgct ggaaatcttt ctcctggttt ttccattcgt
      121 tctggatagc ggtttgcaaa ccaccgagac tacccatcac gccctgtaaa ggattgccgc
      181 cgcctttaag caccgctttg gcgcccattt cgttaatgct gtcctgcaaa ataccgccca
      241 tcgcctgatt caccaactgc tgaccgtcgg cacgcacctg gtcgatagcc ttatagtgga
      301 acgtcaggcc gtccgtacga tgttcgataa tgcggttcat ttgcgctttt aattgcgcat
      361 caagcttcgt caggcggctg cgcatgttgc tgctttcgcc cacctcttta gcgatgattt
      421 tatccagcgc cacgcggcct ttttcgacgc gcgatcgggc gccctcatca atccacggca
      481 gcgcgcttcg cagttccgcc tggtaatctt tcgcctgctc gcgctgcgcg gcgctaaggg
      541 tgtactgctt accgttgtac atcacattgc cgtccggcgt gatcaccagg ttgccgtttt
      601 cacctttcac ctgcaccgtt tgtggactca ggatcacatc gtcacgcggc gtgacgctgc
      661 atttgtaatc tgcatgagcg gccatcgccg taaacgttag cactgccgcc agcagcgttt
      721 tgcgcatcat aactttccct caagacaaag cgggccggca tttgccgacc ctgtacttat
      781 tagtcccacc aaacgtcgaa aagttcgctg gttcggactt cttcaaggtt gcgcgcttcc
      841 agccacttac gcacaatcgc ctgatgttct tcggtacatt taccgatttc ctgcatacaa
      901 atcagccctt cccaggccag gtagccgctg ccgtcaaacg ccagtttatt aggctcaata
      961 acgtcattaa taaagtcatc gacagtctta tcgatctgct cttcagatgt accttccgga
     1021 aaacgccatg ccaccgaaaa tcctaattcc tggaattcgt caatgtgcat ttttttacgc
     1081 agacgacgac tacggttctt tgccattatt tcaccctctc gaacattaag tcccatacgc
     1141 catgaccaag acgatggcca cgttgttcaa atttcgttac cgggcgcgat tccgggcgcg
     1201 gtacataatc attgctctct gacagatttt tgtacccgtc gatagaagac atgacttcaa
     1261 gcatgtgttc cgcatacgct tcccagtcgg tcgccatatg gaaaacgccg cccaatttca
     1321 gcttgctcaa taccagttca gcaaacggca cctgaacgat acggcgttta ttatgacgcg
     1381 ctttatgcca cgggtcaggg aaaaagagct gaaccatcga taaagaattg tcaggaatca
     1441 ttttatgcaa cacttctacc gcgtcgtggc acatgacgtg caggttttca acgccctctt
     1501 catgagcgga cgccagacac gcgccgacac cgggtgaatg cacttcaatg ccgaggaaat
     1561 tctgctccgg gcgcgctttc gccatcgcca cgagagacgc ccccatgcca aaaccaatct
     1621 ccagcgtcac cggcgcttcg cgaccaaaca acgtggcgaa atctaccggc gcttcgctga
     1681 actcgacgcc catcaccggc cagtagtttt ccagcgcgtg ctcttgcccc tttgtcagtc
     1741 gcccctggcg acgaacaaaa ctacgaatac ggcgcagcgg gcgaccgttt tcatcaaatt
     1801 ccggtgaaat gacgtcgttt ttcataaaag tgtagtctgc tgtgtttgag ttctgaaaac
     1861 gggcattatc caaagttagt tgccggatgc aagcatgaag cgcactgcgg aaagttccgg
     1921 tttacaccct gcggcctctg tgctgcaatc ttgcccccgg caataatgaa tgagtttcca
     1981 tgcaagcgtc tcaattttca gcccaggttc tggactggta cgacaaatac gggcggaaaa
     2041 cgctgccctg gcaaattaac aagacgcctt acaaagtatg gctctcggaa gtcatgttgc
     2101 aacaaacgca ggtgacgacg gtgattcctt actttgagcg atttatggcg cgctttccga
     2161 cggtaacgga tttagcgaat gcgccgctgg atgaagtgct ccatttatgg accgggctcg
     2221 gctattacgc ccgcgcgcgt aatttgcata aagcggcgca acaggtagca acgcttcacg
     2281 gtggagaatt cccgcaaact tttgccgaaa tcgccgcgct ccccggcgtc gggcgttcaa
     2341 ccgccggcgc gattctctcc ctcgcgttag gtaaacatta tccgattctt gatggaaacg
     2401 ttaaacgtgt gctggctcgc tgttatgctg ttagcggctg gcctggaaaa aaagaggtgg
     2461 agaatacgct gtggacgctg agcgagcaag tgacgcccgc acgcggcgtg gagcgtttta
     2521 atcaggcgat gatggatctg ggcgcgatgg tttgtacgcg ttcaaagcca aagtgcaccc
     2581 tgtgtccgct gcaaaacggt tgtatcgccg ctgcgcatga aagctggtca cgctatccgg
     2641 gcaagaaacc gaaacagacg ttgccggagc ggacgggtta ctttttattg ttacagcata
     2701 atcaggagat tttcctggcg cagcgccctc ccagcggttt atggggcgga ctctactgct
     2761 ttccgcagtt cgccagcgaa gatgaattac gtgaatggct ggcgcaacgg catgttaacg
     2821 ctgataattt gacccagctt aacgcgtttc gccacacatt tagccatttc cacctggata
     2881 ttgtgcctat gtggcttccc gtgtcgtcac tggacgcctg catggatgaa ggcggcgcgc
     2941 tctggtataa cttagcgcaa ccgccgtcag tcggactggc ggcccccgtg gagcgcttgt
     3001 tacagcagtt acgtaccgga gcgccagttt aacgccccgg tcgatgaaga ggatgactta
     3061 tgagcagaac gattttttgt acttacctgc aacgcgacgc tgaagggcaa gattttcagc
     3121 tctaccctgg cgaactagga aaacgtatct ataacgagat ctctaaggac gcgtgggcgc
     3181 agtggcagca taagcagacc atgttgatta acgagaaaaa gctcaacatg atgaacgccg
     3241 agcaccgtaa actgctggaa caggagatgg tgagcttcct gttcgaaggc aaagacgttc
     3301 atatcgaagg ttatacgccg gaagataaaa aataggcccg ttgctgaatg aggctgcgct
     3361 tattcggcct gtgagttatg ccggataagc ccttagcgcc gctgcccggc aacatggcat
     3421 aacgacaaca caacatgcac tcccggaatg atgaaaaaat tactcgcgct tgctgttatt
     3481 gcgccgttgc tcatctcctg ctccagttcg accaaaaaag gcgagacgta taatgaagcc
     3541 tgggtcaagg ataccaacgg ctttgatatt ttgatggggc aatttgccaa caatattgaa
     3601 aatctgtggg gatataagga agtcctgatc gccgggccga aagactacgt caaatatacc
     3661 gatcagttcc agacccgtag ccacatcaac tttgatgatg ggaccattac cgttgaaacc
     3721 atcgccggga cggaacctac cgcacatctg cgccgggcca ttattaaaac gttgctcatg
     3781 ggtgacgacc caacctccgt cgatctttac tccgatgtcg atgacataaa aatttctaaa
     3841 gaacccttcc tgtatggtca ggtcctcgac aataccggcc agcctattcg ctgggaaggc
     3901 cgcgccacga cattcgcgga ttacttgctg aaaacgcggc tcaaaagccg cagtaacggc
     3961 ctgcgtatta tttacagcgt caccattaat ctggtgccga accaccttga taaacgcgcg
     4021 cataaataca ttggcatggt acgccaggcc tcccgtaaat acggcgttga cgagtcgctg
     4081 attctggcga ttatgcaaac ggagtcctcg tttaacccgt atgcggtcag ccacgcggat
     4141 gcgctgggcc tgatgcaggt agtgcaacac agcgccggga aagatgtttt ccgttctcag
     4201 ggtaagtccg gcacgccaag ccgtaacttc ctgttcgacc ccgccagcaa tatcgatacc
     4261 ggcacagcgt atctggcgat gttgaataat gtctatctga gcggtatcga gaatccgacg
     4321 tcgcggcgct atgcggtcat tactgcctat aatggcggcg caggcagcgt attacgcata
     4381 ttctcgaacg ataagattca ggccgcgaat atgattaacc gcatgtcgcc gggggatgtg
     4441 taccagatat taaccacccg acatccatct gcggagtcgc gccgctatct gtataaggtg
     4501 aattccgccc agcgatcgta tcgccgccga taaaccatcg catcccgcct ctggccagca
     4561 aatgacagag gcgggaaagg caaaagtgtt aactccgtca cccttttgct ttgcaatcag
     4621 aaattgtttg caaatatttg tcacaggtaa caaaaaaagc ccgcctctca ttgatagaat
     4681 cacaccaaat cacaacggca aatgtgcctt ttaaaacatt catccgctct caggtgtgag
     4741 gaaattaaca tgaatcttaa gctgcagctt aaaatactct cttttctgca gttctgtctg
     4801 tggggaagct ggctcactac cctgggctcg tatatgttcg tcaccttaaa atttgacggc
     4861 gcatctattg gcgcagttta tagttcactg gggattgctg ccgtctttat gccgaccttg
     4921 ctaggcattg tggctgacaa atggctgagc gcgaaatggg tctatgccct gtgtcatgtc
     4981 gtcggcgcca tcacgctatt catggccgcg gaagtcacta cgcctggggc gatgttcttt
     5041 gtgatcctgc ttaactcgtt ggcttatatg ccgacgttgg gcttgatcaa tactatatcg
     5101 tattaccgcc tgcagtctgc cggcatggat attgtgactg actttccgcc tatccgtatc
     5161 tggggcacca tcggctttat tctggcgatg tggggcgtga gtttctccgg tttcgagctg
     5221 agccatatgc agctttatat cggcgcgacg ctttccgttc tgctggtact gtttaccttt
     5281 accctgccgc acattccggt ggcgaaccaa cagaaaaacc agagctggac atcaatgctg
     5341 ggccttgacg cttttgcgct gtttaaaaac aagcggatgg cgattttctt catcttctcc
     5401 atgatgctgg gcgcggaact gcagatcacc aacatgtttg gcaacacctt cctgcatagc
     5461 tttgataaag atccgctatt cgccagtagc tttatcgtgc agcacgcctc ggtgatgatg
     5521 tcgatttcgc agatttctga aacgttattc atcctgacca ttccgttctt cctgagccgt
     5581 tatggtatta agaacgttat gcttatcagt attgtggcgt ggatgctgcg tttcggcctg
     5641 ttcgcttatg gcgacccgac gccgttcggt accgttctgc tggtattgtc gatgattgtg
     5701 tacggctgcg ccttcgactt cttcaacatt tctggctcgg tgtttgtcga aaaagaagta
     5761 cgcccggaaa tccgcgccag cgcgcagggg atgttcctga tgatgaccaa tggcttcggc
     5821 tgtatccttg gcggcattgt gagcggtaaa gtggtggagt attacactca aaacggcatt
     5881 accgactggc agaccgtgtg gctcatcttc gcaggctact cgctggtgct ggcctttgcg
     5941 ttcgtagcct tgttcaaata caaacacgtt cgcgttccgg caagttcgca acccgttgca
     6001 cattaatcct tgccctgttt cgcaggccgg ataaggcgta aatgccttat ccggcctgca
     6061 ggcaacgtta ctttaaaaca tatccataca agcgtttaat tccatcggca tcggtctcgc
     6121 tatatacccc ctgcaattcc ggcgaaaaac cgagcaacag attgatgccc tcttccagcg
     6181 ccaaaaaata acgctgcgcc gcgccacccc aaatctcccc cggcaccacg cacagtacgc
     6241 ccggcgggta tggcaatgcc ccctcggcag caatacgccc gcccgcctcg ctgatacgca
     6301 ccagctctac atcgccgcga ataaaggcgc tgttggcatc ctgcgggttc atcgccacat
     6361 gcggcaggct ttctttgcga aacatcgctt tttgcagatc cttaacgtca aagctaacgt
     6421 acaggttgtg catctcctga catagctcac gcagggtgta atcgcggtag cgcaccgggt
     6481 atttctgaaa aaccgtcggc aatacatccg caagcggcgt atcgtcttca atgtgccgtt
     6541 caaattgcgc cagcatcgcg accagtcgcg ccagtttctc ttcgctctcg gcgggtgtca
     6601 gcaagaatag aatcgagttg agatcgcact tctcaggcac aataccgttc tcacgcagat
     6661 agtgggcgag aatggtcgcc gggatgccga attcggtgta ccgcccacta tcggcatcaa
     6721 tacctggcgt ggtcagtaac agtttacaag gatcgacaaa atactggtca tccgcataac
     6781 cctcaaagcc atgccatttc gccccgggct caaaactgaa gaaacgacga ttgctggcaa
     6841 tggtctccgt cggatatgcc tgccacggct tgccgtcaac caccagtggg ataaagggct
     6901 gaagcagttt gcaacgggcg agaatggctt tacgcgcgtc aatgcccagc gcaacgcact
     6961 ccgcccacag gcggcgaccg ctctcccctt cgtggatttt ggcattgaca tccagcgccg
     7021 caaacagcgg gtagaacgga ctggttgaag catgcaacat gaaggcgttt gtgcgggcaa
     7081 aaacgcgcct ggccgcgaat atggttatct tttttgtgga tctgcgaggt ttgtgagaac
     7141 cccgcctgtt gcttatgtac cgattgggtc acaaagatcc cagggtcgtt ttcattaagc
     7201 tccagccgca acggcgaggt atccgccatc atattgataa actgctcata gcctacccac
     7261 gcggagtcaa acagaatgta atcgcagaga tgcccgattt tatccaccac ctgacgggcg
     7321 ttgtaaatag tgccgtcata ggtacccagc tgaatgatcg ccaggcggaa cggacgcggc
     7381 gcatcggcgc tttccggcat cacgtcacga atctggtcgc gcaggtacgt ttcatcaaaa
     7441 cagtgcgcat caataccacc gataaaacca aacgggttac gcgccgcctc aagatagacc
     7501 ggcgtcgccc cggcctgaat cagggcgccg tggtggttgg atttgtgatt atttcgatca
     7561 aacagcacca gatcgccgcg cgtcagcaag gcgttggtga ccactttatt cgccgccgaa
     7621 gttccattca gcacaaagta ggttttatcc gcattaaaca cttttgccgc aaatttctgc
     7681 gcgtgtttgg cagaaccttc atgtattagc agatcgccaa gtttcacatc ggcgttacac
     7741 atatccgcac gaaacaggtt ttcaccaaaa aagtcataaa aatggcggcc tgcgggatgt
     7801 tttctaaaaa actcgccatg ctggtgcccc gggcaagcaa aggtactatt ccccatgtcg
     7861 acatactggg tcagggtgcc ataaaagggc ggcagaagtt ccgcttcgta gcgacaggca
     7921 gcgttttcca gctccagcca ttcctgcgcg ttcccgccga ttaccgccgt aacgccgaca
     7981 ggcgcgctga cgggttcatc cgcaagcata aataccggca ggtgaaaacc ggtgcgttta
     8041 agcaacgcca gaataccgct acggctgtcg gcagtggtaa tgacgactgc ggccacatcg
     8101 gtaaagtcgg tactttccag tgccactacg tttcggtggg tggagagacg ggggatgagt
     8161 tcaccgctgg cggcaatatt cattgatttc ataagcgcaa atacccgttt cgggagtaga
     8221 gtaaccccgg acaaggccga tgccttgccc aacgagatgc cgggtcaaac tggataccag
     8281 ctccgaccgc cagacatcag taaaaacaga ctgtttctga ttttactgtt gtcctgcagt
     8341 gagcgtgcgc tgccctcacc gcatagcggg gatgacaaaa aaaaggaaag aaaggggcaa
     8401 acctcgcgca gtcaggcgac agtgaagaca atataaaggc gctatgttca tcccggcgag
     8461 ccccatgctg gcaggagaaa tttcgcgcaa tcatggcacc tttcaccaga cggcgcaagg
     8521 taaaatcagc gctctatacg tcacagataa tcaagctatt aacagcttaa tcgcgtgata
     8581 ataaggcaat ttgaaagaca aataacagga gtcattgtgg taattggacc ttttattaac
     8641 gctggcgcaa ttttattcgg cggcgttatt ggcgcgctgt taagtcagcg tctgccagaa
     8701 cggattcgcg tctcaatgac gtctattttt ggtctgtgct ctctgggtat tggcattctg
     8761 ctggtgatga agtgcgctaa tcttccggtg atggtgctgg cgacgctggt cggcgcgctt
     8821 atcggcgagt tttgtttgct ggaaaaaggc attaatggcg cagtcgcgaa aatccaacaa
     8881 ttatttatgg catcgggtaa gaagccgaca cacgactctt ttattcaaag ttacgtcgct
     8941 atcattgtac ttttttgcgc cagcggcacc ggtattttcg gcgcgatgca tgaagggatg
     9001 accggcgatc caaacatttt gatcgctaaa tcttttctgg atttttttac tgccattatt
     9061 ttcgcctgtt cgcttggcat cgccgtttcg gcgatttgcg caccgatgtt gattatccag
     9121 ttaacgcttg ccgcctgcgc caccctcatt cttccactga ctacgccggc aatgatgggc
     9181 gactttagcg ccgtgggcgg gctgctgctg gtggcaaccg gcttgcgtgt atgtggaatc
     9241 aaaatgtttc cggtagtgaa tatgctcccg gcgctgttgc tggcgatgcc gatctccgcc
     9301 gcatgggcga tgttttttgc ctgactctgc gtgcaataac aacaaagtgg tgatagattg
     9361 tgcagtctac gttgatttga agaaatttcg ttgacgaagc gaggcgatta cggtttaatg
     9421 cgcctcgttg cccggatagc tcagtcggta gagcagggga ttgaaaatcc ccgtgtcctt
     9481 ggttcgattc cgagtccggg caccaccttt ccttttttac acttccttat aaatccccat
     9541 gtgtttttaa ttcaatgagt tagtggaaaa actcttccca gcgaatttct atttatccgc
     9601 ccaaatcagg ggcttttggt ggtcaactcg gtgctcagtt cggttagata aaggagtgcc
     9661 ctcaaatggc attaaccgac aaacaagcac gtagtgcaaa gccttctgat aaaccctata
     9721 aactcgttga tacactcggc ctgtatcttc tggtaaaacc caacgatttt cgtatctggt
     9781 atttcaaata tcgttttgag ggaaaagagt ccggggtatc attcggtcct tatcccgaaa
     9841 cctcattcgc ccttgtccgc gaaaaacgcg atgccacccg gcgcgtacta aaatccggct
     9901 ttaccccttc tcagcagcgc cgggacgaaa aaaggttgtc aatgaattag aacgttccag
     9961 tacatcgcta gattgtggca taccggctgc ctgaaactct ggtcagaaag tcactccaat
    10021 aaaattcctg tctgcctcca acactacgtt ttccctgata tcggcgcaat gggtatttcg
    10081 gcgacttaaa ccctacatct cgcacgactg gtcagagaca ttgatgataa aggtgtgcat
    10141 gttgttgccg gacgtatacg ccagcatctg accaaaatta tgcgccacgc cgtacagcag
    10201 ggaacgatta aatataatcc ggcattcgat ctggatggcg ttgtaactcc tgttataacc
    10261 cagcatcacc ccgcccttcc cctgaaacgc ctgcctgaat tgctgggcta tatcgacacc
    10321 tacaacaagg ccggataccg gctatcaaca ctttccggta tgccgcactg ccaggacaac
    10381 accaaacgtg agttcacaca tctggttaga gtttctctgg cttaccgcaa aattgagtgg
    10441 gaacacgttt caacaggcac ttcaggtgct gatgactgac gtgcgccgct ggaagcataa
    10501 gagtaaatcc acagcattcc gccttaatgg tgggatgctg tttttgtccg ggaacggaga
    10561 caaaaagccc gtgccagcaa tgagttacgt ctgttacgtt tcatatatgg gagatggtgg
    10621 atgccggaaa ctttggcggt agcgtgcctg aagcggctgt cctccccatt gccactgcca
    10681 cgagcgtacc gtggttcctt tttcgccaat aaatccagaa taaggttatg tcacaaaatg
    10741 gcctgcgttt tacgctggat gtggacggat taacgccggc ggcaaccact gtcgtcagct
    10801 tcaccctcca gaggtatcaa cagttcaaca ggtgcaagct ggaataagaa tgaaagacta
    10861 aaaacaccag atgatgcatc caatgatagc attaaatc
//
LOCUS       DAJVSD010000147        10842 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.147, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000147 DAJVSD010000000
VERSION     DAJVSD010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10842
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.147"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(17..92)
                     /locus_tag="OQP62_003015"
     tRNA            complement(17..92)
                     /locus_tag="OQP62_003015"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(57..59),aa:Gly,seq:gcc)
     gene            complement(249..324)
                     /locus_tag="OQP62_003016"
     tRNA            complement(249..324)
                     /locus_tag="OQP62_003016"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(289..291),aa:Gly,seq:gcc)
     gene            620..1339
                     /locus_tag="OQP62_003017"
     CDS             620..1339
                     /locus_tag="OQP62_003017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1722507.1"
                     /translation="MLLASLSVHAASVSARTLHFGTSATYAPYEFVDADNKIVGFDID
                     VANAVCKEMQAECSFTNQSFDSLIPGLRFKKFDAVIAGMDMTPKREQQVSFSQPYYEG
                     LSAVVVTRKGAYHTFADLKGKKVGLENGTTHQRYLQDKQQAITPVAYDSYLNAFTDLK
                     NNRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYGKGLGIAVRKGNDALLQEINA
                     ALDKVKASPEYAQMQEKWFTQ"
     gene            complement(1401..1946)
                     /gene="orn"
                     /locus_tag="OQP62_003018"
     CDS             complement(1401..1946)
                     /gene="orn"
                     /locus_tag="OQP62_003018"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HCS1722508.1"
                     /translation="MSADENNLIWIDLEMTGLDPERDRIIEIATLVTDASLNILAEGP
                     TIAVHQSDAQLALMDDWNVRTHTGSGLVDRVKASTMGERDAELATIEFLKTWVPAGKS
                     PICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILAGFTKQGTHQA
                     MDDIRESVAELAYYREHFIKL"
     gene            2053..3105
                     /gene="rsgA"
                     /locus_tag="OQP62_003019"
     CDS             2053..3105
                     /gene="rsgA"
                     /locus_tag="OQP62_003019"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313167.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HCS1722509.1"
                     /translation="MSKNKLSKGQQRRVNANHQRRLKTSAEKADYDDNLFGEPAEGIV
                     ISRFGMHADVESADGEVHRCNIRRTIRSLVTGDRVVWRPGKAAAEGVNVKGIVEAVHE
                     RTSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLN
                     KIDLLDDEGMDFVNEQMNIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGV
                     GKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLW
                     HLEPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVENGAIAETRFENYHRILE
                     SMAQVKTRKNFSDTDD"
     gene            3197..4165
                     /gene="psd"
                     /locus_tag="OQP62_003020"
     CDS             3197..4165
                     /gene="psd"
                     /locus_tag="OQP62_003020"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463212.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HCS1722510.1"
                     /translation="MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKY
                     YKVDMTEAQKPDTASYRTFNDFFVRPLRDDVRPLNTDPNILVMPADGVISQLGRIEED
                     KILQAKGHNYSLEALLAGNYLMADKFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYV
                     PGDLFSVNYLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTIT
                     PPREGIIKRWTWPEGEHEGSVALLKGQEMGRFKLGSTVINLFAPGKVNLIASLASLSV
                     TKIGQPLATSTETFVAPEVEPAPLPAEEIKAEHDASPLVDNKKDDT"
     gene            4184..7510
                     /gene="mscM"
                     /locus_tag="OQP62_003021"
     CDS             4184..7510
                     /gene="mscM"
                     /locus_tag="OQP62_003021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="miniconductance mechanosensitive channel MscM"
                     /protein_id="HCS1722511.1"
                     /translation="MRLIIAFLMAWCLSTGAFAATAPDAKQITQELEQAKAAKPAQPE
                     AVEALQTALNALEERKGSLERAKQYQHVIDNFPKLSATLRAQLNNLRDEPRSVPPEMS
                     TEALNQEILQVSSQLLDKTREAQQEQERVREIADSLSQLPQQQNDARRQLNEIERRLG
                     AAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSANNRQELARLRSELAEKQSQQL
                     DAYLQALRNQLNSLRQREAERALESTELLAENSAGLPEGIVEQFKVNRGLSQALNQQA
                     QRMDLVASQQRQATSQTLQVRQALNTLREQSQWLGVSNMLGEALRAQVARLPEMPKPQ
                     QLDTEMAQLRVHRMRYEELLNKQPQLRQIRQANGQPLTAEQNQILDAQLRTQRELLNS
                     LLQGGDTLILELTKLKVSNSQLEDALKEVNEATHRYLFWTADVSPLSLSWPVDLVQDL
                     RRLISLDTFNQLGKASIMMLTSKETLLPLFGALALVGFSLYSRQHFNRFLERSASRVG
                     KVTQDHFSLTLRTVFWSILVASPLPVLWATLGYGLQEAWPYPLAVAIGDGVTATVPLL
                     WVVMICAAFARPNGLFVAHFGWPRNRVAKAMRYYLMSIGLIVPLIMAVIMFDNLNDRE
                     FSGSLGRLCFILICGALALVTLSLKKAGIPLYLDKEGNGDNMVNSLLWNMLMGAPLIA
                     ILAAAVGYLATAQALLARLETSVAIWFLLLVIYHVIRRWMLIQRRRLAFDRAKHRRAE
                     MLAQRARGEEEPAHSSSLEGAVDIDESEIDLDAISAQSLRLVRSILMLIALLSVIVLW
                     SEIHSAFGFLENISLWDVTSTVQGVESLEPITLGAVLIAILVFIITTQLVRNLPALLE
                     LALLQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFG
                     LQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNK
                     AFITEQFINWSLSDSVTRVVLTIPAPADANSEEVTQILLTAAQRCSLVLDNPPPEIFL
                     VDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFREHGIDMPFPPFQMRLESLGG
                     KQTGRTLTSAGKTSRPAGSL"
     gene            complement(7647..7967)
                     /locus_tag="OQP62_003022"
     CDS             complement(7647..7967)
                     /locus_tag="OQP62_003022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001682126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722512.1"
                     /translation="MNDSSRDPIITEDEIRALNFTPEDILEIEKVILSSVHVARRKVA
                     MVVGMTIGTLRDRDEDKWKHVSDIYCAYVVRCLVFRGELVGYGDLFRMRYSEINLPVA
                     DLDA"
     gene            complement(8032..9534)
                     /gene="yjeM"
                     /locus_tag="OQP62_003023"
     CDS             complement(8032..9534)
                     /gene="yjeM"
                     /locus_tag="OQP62_003023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/gamma-aminobutyrate family transporter
                     YjeM"
                     /protein_id="HCS1722513.1"
                     /translation="MTHTIKKMSLIGLILMIFTSVFGFANSPSAFYLMGYSAIPWYIF
                     SALLFFIPFALMMAEMGSAYRKEEGGIYSWMNNSVGPRYAFIGTFMWFSSYVIWMVST
                     AAKIWVPFSTFVFGADMTQHWRIAGLEPTQVVGLLAVGWMILVTCVAARGINKIARIT
                     AVGGIAVMCLNLVLLLVSVAILLLNGGHFAQEINFTSSPNPGYHSGLAMLSFVVFAIF
                     AYGGIEAVGGLVDKTEKPEKNFAKGIVFAAIVISIGYSLAIFLWGVSTNWQQILSNSA
                     VNLGNITYILMSSLGTTLGNALNLSPEAAMTVGVWFARITGLSMFLAYTGAFFTLSYS
                     PLKAIIQGTPKALWPAPMTTLNANGMPATAMWLQCVLVSLFILLVSFGGDTASAFYNK
                     LTLMANVSMTLPYLFLALAFPFFKARQDLERPFVLFKTKASTLVATGVVVLVVTFANV
                     FTIIQPVIEAGDWDSALWMIGGPIFFSLLAMAIYQNYSSRMSADPEWAAE"
     gene            complement(9760..10737)
                     /gene="epmA"
                     /locus_tag="OQP62_003024"
     CDS             complement(9760..10737)
                     /gene="epmA"
                     /locus_tag="OQP62_003024"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000004771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HCS1722514.1"
                     /translation="MSETATWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMS
                     QATVTDIHLFPFETRFVGPGHSQGINLYLMTSPEYHMKRLLAAGCGPVFQLCRSFRNE
                     EMGRHHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCQPAESLSYQQAFLRHLEID
                     PLSADKTQLREAAAKLDLSNIADTEEDRDTLLQLLFTMGVEPHIGKEKPTFIYHFPAS
                     QASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQ
                     QPIDQNLLDALAAGLPDCSGVALGVDRLVMLALGAESLADVIAFTVDRA"
BASE COUNT         2675 a         2963 c         2752 g         2452 t
ORIGIN      
        1 tactgtagat aagaattgga gcgggaaacg agactcgaac tcgcgacccc gaccttggca
       61 aggtcgtgct ctaccaactg agctattccc gcataatctt cgtctttcga accgctactg
      121 ccttggctgc cttcactcgc ctgagtcact tacttcagta agctcctgag gactcattca
      181 gttgccgcct tgtcgcaatt cgaaatcctg cgattggtgg tttgtactta acaagtactt
      241 tcaaattttg gagcgggaaa cgagactcga actcgcgacc ccgaccttgg caaggtcgtg
      301 ctctaccaac tgagctattc ccgcaaattt gttgctgtcg taattcgcat ttctgcgtcg
      361 ttacgggagg cgcattatac gagaaatcca tttagctgca agcccctgaa cgcatttttt
      421 cgcgattttt gtttgaatgc tgattaaatc accaaacaag acaaaaaacg agcaaagcgt
      481 gcgctatgca acaaaaaact tttcacgcca cgcctaaagg cacagaatca gaatagcacc
      541 ctgcgccaaa aaaagaatag cacggtgacc acaacatcca attgatatca gggatcaaga
      601 tgaaaaaaaa cttattgtca tgctgttagc cagcctctcc gttcacgctg cttccgtttc
      661 cgccagaaca ttacattttg gcacctccgc cacctatgcg ccctatgagt ttgtcgatgc
      721 cgataataaa attgttggtt tcgatattga tgtcgccaac gcggtctgca aagagatgca
      781 agcggagtgc tcattcacta accagagctt tgatagtctg atccccggcc tacgtttcaa
      841 aaagtttgat gcggtgatcg ccggtatgga tatgacgccc aaacgtgagc agcaggtctc
      901 ctttagccaa ccctattacg aaggtttatc ggcggtagtc gtcacgcgta aaggggctta
      961 tcacactttt gccgatctga aaggcaaaaa agtcggactg gaaaacggta caacgcatca
     1021 gcgctatttg caggataaac aacaagctat cacgcctgtc gcctatgaca gctatctaaa
     1081 cgcttttacc gatctgaaaa ataaccgtct tgagggcgtg tttggcgatg tcgccgcgat
     1141 tggtaagtgg ctaaaaaaca atccggatta cgccatcatg gatgaacgcg ccagcgatcc
     1201 tgactactac ggaaaagggt taggcattgc ggtacgcaaa ggcaacgacg cgctattgca
     1261 agaaattaat gccgcgctcg acaaggtgaa agcgtcgccg gaatatgcgc aaatgcagga
     1321 gaaatggttt acgcagtaat tcagtggcgg gagagctgcc ggatgagacg ctctggcgtt
     1381 gccatccggc atgttacgcc tcacagctta atgaaatgct cgcggtagta agccagctcc
     1441 gccaccgact cgcgaatatc atccatcgcc tggtgcgtgc cctgcttggt aaagccggcc
     1501 agaatctccg gcttccagcg gcgcgccagt tccttgagcg tactgacatc cagatagcga
     1561 tagtggaagt aagcctccag ttccggcata tatttaaaca gaaaacgacg atcctgaccg
     1621 atgctgttac cgcaaatcgg cgacttaccc gcaggcaccc acgttttcag aaattcaatc
     1681 gtcgccagtt cagcgtctcg ttcgcccatc gtacttgctt taacgcgatc taccaggccg
     1741 ctaccggtat gggtgcgcac gttccagtca tccattaacg ccagttgcgc atcggattga
     1801 tgtaccgcaa tcgtcggccc ttccgccaga atgttcaggc tggcatccgt cactagcgtg
     1861 gctatctcaa taatgcgatc gcgttcgggg tccagacctg tcatctccag atcgatccaa
     1921 atcaggttgt tttcatcggc actcatgcta ttttccaccc ttcagaggtc acattcactg
     1981 tgactatatt catctacaat tgcgtgtatc atagatgttt tgcccactat gggcgaccag
     2041 gagccagtac gattgagcaa aaataaactc tccaaaggcc agcagcgccg tgtgaacgcc
     2101 aatcaccagc gtcgtttaaa aacgtccgcg gagaaagccg actacgatga caacctgttt
     2161 ggcgagcctg cagaaggtat cgtcattagc cgttttggta tgcatgccga tgtggagtct
     2221 gctgacggcg aggttcaccg ctgcaatatc cgccgcacta tccgttcgct ggtgacgggc
     2281 gatcgcgtcg tctggcgtcc gggcaaagcc gccgcagagg gcgtcaacgt aaaaggcatc
     2341 gttgaagcgg tgcatgagcg cacctcggta ttgacgcgcc cggacttcta cgacggcgtg
     2401 aagcctattg ccgccaacat tgaccaaatc gttattgtct ccgcgatttt gccggagctg
     2461 tcgctgaata tcatcgatcg ctatctggtc ggctgtgaaa ccctacaggt tgagccgctt
     2521 atcgtactca ataaaattga tctgctggac gacgaaggta tggacttcgt taatgagcag
     2581 atgaatatct accgcaatat cggctatcgc gtgctgatgg tctccagcca tacgcaggat
     2641 ggtctgaaac cgctggaaga agcgttaacc ggtcgcatca gtatttttgc cgggcagtcc
     2701 ggcgtcggaa aatccagtct gctaaacgct ctgctcggct tacagaacga gattctgacg
     2761 aacgatgtgt cgaatgtctc cggtctgggt caacatacca ctaccgctgc tcgtctgtat
     2821 catttcccgc atggcggcga tgtcattgat tcccccggcg tgcgcgagtt cggcttatgg
     2881 catctggagc cggaacaaat cacccagggc tttgtcgaat ttcatgacta tttgggacat
     2941 tgtaaatacc gggactgcaa gcatgacgcc gatccaggct gcgccattcg cgaggcggta
     3001 gagaacggcg ctattgcgga aacccgtttc gaaaattatc accgaattct tgaaagtatg
     3061 gcgcaggtaa aaacgcgtaa aaacttttct gatacggacg actgacagat acgctaggcg
     3121 tcgttagaat cgtccccttt tttcaggata ccggtataac tgccggttca ggaacaacaa
     3181 tggcctggag gctaccttgt taaactcatt taaactttcg ctacaataca ttctgccgaa
     3241 actatggctc actcgcctgg cgggctgggg cgcaagcaaa cgagcaggat ggctgacaaa
     3301 actggttatc gatctcttcg taaagtatta caaagtcgat atgaccgagg cgcaaaaacc
     3361 ggataccgcc agctatcgta cgttcaatga tttctttgtt cgtccgctgc gtgatgacgt
     3421 gcgtccgctc aataccgatc ctaacatcct ggtgatgcct gccgacggcg tgataagcca
     3481 gttgggtcgt atcgaagaag ataaaatttt gcaggccaaa ggccataatt acagccttga
     3541 agcgttgctg gcgggtaact acctgatggc ggataagttc cgcaacggca cgtttgtgac
     3601 cacttacctc tcccctcgcg actaccatcg cgtgcatatg ccatgcaacg gcatcctgcg
     3661 cgaaatgatc tacgtgccgg gcgatctgtt ctccgttaac tatctgaccg cgcaaaacgt
     3721 ccccaacctg tttgcccgca acgagcgcgt tatctgtctg tttgataccg agttcgggcc
     3781 tatggcgcag attctggtcg gcgcaactat tgtcggcagt atcgaaaccg tctgggcggg
     3841 gaccattacc ccgccgcgcg aaggcatcat caagcgctgg acctggccag aaggcgaaca
     3901 tgaagggtct gtcgccttgt tgaaaggcca ggagatgggg cgctttaaac tgggttccac
     3961 ggtcatcaac ttatttgcgc cggggaaagt gaatctgatc gcgtcgctgg caagcctgtc
     4021 cgttaccaaa attggccaac cgctggcgac gtcgaccgaa acattcgtcg cgccggaggt
     4081 ggaacctgct ccgctgccgg cagaagaaat taaagctgaa cacgacgcca gcccgctggt
     4141 tgacaataaa aaagacgaca cctaatcaag agagaatgct gacgtgcgcc tgattatcgc
     4201 ttttctgatg gcctggtgcc tcagcacggg ggcgttcgcc gcaacggccc ccgacgccaa
     4261 acaaatcacg caggaactgg agcaggcaaa agcggcgaaa cccgctcagc cggaagccgt
     4321 tgaggcgctc cagactgcgt taaacgcgct tgaagagcga aaaggctcgc ttgagcgcgc
     4381 gaaacaatat caacacgtta ttgataattt ccctaagcta tccgccacct tgcgcgccca
     4441 gttgaataat ctgcgcgatg aacctcgcag cgtaccgcca gagatgtcca ccgaagcgtt
     4501 aaatcaggag atcttgcagg ttagcagcca gctactggat aaaacccgcg aggcgcaaca
     4561 ggagcaggag cgcgtcaggg agatcgccga ctcgctcagc cagcttcccc aacagcaaaa
     4621 cgacgcccgc cgccagctta atgagattga gcgacgactc ggcgccgcag gcggaagtgc
     4681 cgcgcttagc caggcgcaaa gtctcagtat gcaggcggag tccgccaaac taaaagcgtt
     4741 agtcgacgaa ctggagttgg cgcaactgtc cgccaacaac cggcaggaac tggctcgtct
     4801 gcgttccgag ctggcggaaa aacagagtca gcaattggat gcgtatcttc aggcgctgcg
     4861 caatcagctc aacagcctgc gtcaacgtga agcggaacgc gcgctggaaa gcactgagct
     4921 gctggcggaa aacagcgccg gtttgccgga aggcatcgtc gaacaattta aagtcaaccg
     4981 cgggctgtca caggcgctca atcaacaagc gcagcggatg gatctggtcg cctcgcagca
     5041 gcgacaggcc accagccaaa cgttacaggt gcgtcaggcg ctcaatacgc tgcgggagca
     5101 gtcgcaatgg cttggcgtgt ccaacatgct tggcgaagcg ctgcgcgcgc aggtcgcccg
     5161 tctgccagag atgcctaagc cgcagcagct tgatacggaa atggcgcagc tacgcgttca
     5221 ccgtatgcgc tatgaagaat tactcaataa gcaaccgcag ctacggcaaa tacgtcaggc
     5281 caatggacaa ccactgaccg ccgagcaaaa ccagattctt gacgcccagc ttcgcactca
     5341 gcgcgagctg ctcaactctt tgttacaggg cggcgacacg ctgatcctgg agttgaccaa
     5401 actgaaagtc tccaacagcc aactggagga tgcgcttaaa gaggttaatg aagcgaccca
     5461 ccgttatctg ttctggaccg ctgacgttag cccgctatcg ctctcctggc ctgttgattt
     5521 ggttcaggat ttacgtcggc ttatctcatt agatacgttt aatcagttag gtaaagccag
     5581 catcatgatg ctgaccagca aagagacgct actgccgtta ttcggcgcgc tggcgctggt
     5641 cgggtttagc ctctattcac gccaacactt caaccggttc cttgagcgct cggcctcgcg
     5701 cgtcgggaaa gtcacccagg atcacttctc gctgacgctg cgaacggtgt tctggtcgat
     5761 tctggtcgcc tcgccgctgc ccgtcttgtg ggcgacgctc ggctatggtc tacaggaagc
     5821 ctggccgtat ccgctggccg tcgccatcgg cgatggcgtg acggcgacag taccgctgtt
     5881 gtgggtagtc atgatttgcg ccgcttttgc ccgccctaat ggtctgtttg tggcgcattt
     5941 cggctggccg cgaaaccggg tagcgaaagc gatgcgctac tacctgatga gcattgggct
     6001 gatcgtgccg ctcattatgg cagtgatcat gtttgataat cttaacgatc gggagttttc
     6061 cggctcgttg ggccgccttt gcttcatcct gatatgcggc gcgctggcgc tggtcacgct
     6121 gagtctgaaa aaagcgggca tcccgctcta tcttgataaa gaaggcaacg gcgacaacat
     6181 ggtcaacagc ctgttgtgga atatgttgat gggcgcgccg cttatcgcga ttctggcggc
     6241 ggcggtgggt tatctggcca cggcgcaggc gctactggcg agactggaaa cctcggtcgc
     6301 catctggttc ctgttgctgg tcatttatca cgtcattcgc cgctggatgc tgatccaacg
     6361 acgccgactg gcttttgacc gcgccaaaca tcgtcgggcg gaaatgctgg cgcagcgcgc
     6421 gcgcggcgaa gaagaaccgg cgcactcctc cagcctggaa ggcgcggtcg acatcgatga
     6481 aagtgaaatc gatcttgacg ctattagcgc tcagtcgctg cgtctggttc gctcaattct
     6541 gatgcttatc gccctgctat cggtaattgt actgtggtcg gaaatccact cggcattcgg
     6601 cttcctggag aatatttcgc tgtgggatgt cacctctacg gtgcaaggcg tggaaagtct
     6661 ggagccgatt accctggggg cggtgctcat tgcgattctg gtctttatca tcaccacgca
     6721 gttggtgcgt aatctgcctg cgctgctgga gctggcgtta ttacagcatc tcgatttaac
     6781 gccaggtacc ggttacgcca tcacgaccat caccaaatat ctgttaatgc tgattggcgg
     6841 gctggtcggt ttctcgatga tcggcattga gtggtcgaag ctacaatggc tggttgccgc
     6901 gctcggcgtt gggcttggtt ttggcctgca agaaattttc gctaacttta tctccggcct
     6961 gattattttg tttgaaaagc cgattcgtat cggcgatacg gtgaccattc gcgatctcac
     7021 cggcagcgtg accaaaatca atacccgcgc caccaccatc agcgactggg atcgtaaaga
     7081 gattatcgtg ccgaataaag cctttatcac cgaacagttt atcaactggt cgctgtctga
     7141 ctccgttacg cgcgtggtgt taaccatccc ggcgccggcg gatgccaata gcgaagaggt
     7201 gacgcaaatt ctgctgacgg cggcgcagcg ctgttctttg gtgcttgata acccgccgcc
     7261 tgaaatcttt ctggtggatc tccagcaggg tattcaaatt tttgaactgc gtatctatgc
     7321 cgcggaaatg ggacaccgta tgccattacg ccatgagatc caccaattga ttctggctgg
     7381 cttccgcgag cacggtattg atatgccgtt cccgccgttc cagatgcgtc tggagagtct
     7441 cggcggtaaa caaacgggga gaacgttaac gtcagcgggt aaaaccagcc gcccggcggg
     7501 gagtttgtag cgcatgatcc cggcaagaaa tgccggatgc gccccgtcgg gtcttatccg
     7561 gcctacgggc cgacaattaa tctgtaggcc cgataagctt gcgccatcgg gcatttcatc
     7621 gcaactcaca gacattttcg gacttattat gcgtccagat cggcaacagg caggttaatt
     7681 tcgctatagc gcattcggaa taaatcgccg taacccacca gttctccgcg aaatacgagg
     7741 catcttacaa catacgcgca ataaatatcc gacacatgtt tccacttatc ctcatcgcga
     7801 tcccttaacg tgccaatagt cattcctact accatcgcaa cctttcgacg tgcaacatga
     7861 acggaagaaa gaataacctt ttctatttca aggatatctt ccggagtaaa attgagtgcc
     7921 ctaatctcat cttccgtgat aatcgggtct ctcgaactat cattcatcac gttctccata
     7981 gggcaataaa cgccggatgc gacccgtggg gccttatccg gcatacggcc tttactccgc
     8041 cgcccactcc ggatcagcgc tcatgcggct gctgtaattc tgataaatcg ccatcgccag
     8101 cagcgagaag aagatcgggc cgccgatcat ccacaaggcg ctgtcccagt ccccagcttc
     8161 aatcactggc tggatgatgg taaagacgtt ggcaaacgtc accaccagca ccacaacacc
     8221 cgtcgcgacc agggtagagg ctttggtttt aaagagaaca aatggccgct ccagatcctg
     8281 acgcgcttta aagaagggaa atgccagcgc aaggaacagg tatggcaagg tcattgagac
     8341 gttcgccatc agcgtgagtt tgttataaaa cgccgatgcg gtgtcaccgc caaaagagac
     8401 cagcaaaata aacagactca ccagcacgca ctgtagccac atagcggtcg ccggcatacc
     8461 gttagcgttc agtgtcgtca tcggcgcggg ccacaacgct tttggcgtcc cctgaataat
     8521 ggctttcagc ggtgaatagc tcaacgtaaa aaacgcgccg gtataagcca gaaacataga
     8581 aaggccggtg atacgcgcaa accagacgcc caccgtcatc gcagcttccg gagaaaggtt
     8641 taacgcgtta cctaatgtcg tgcctaaact cgacatcaga atgtaggtga tattccctaa
     8701 gttaacggcg ctattactta atatctgttg ccagttagta ctgacgcccc ataaaaagat
     8761 cgccaaagaa taaccaattg aaatcacaat ggccgcgaaa acaatacctt tcgcaaaatt
     8821 cttttccggt ttctcggttt tatccaccag tccgccgaca gcctcaatac cgccgtaagc
     8881 aaaaatagca aataccacaa atgacaacat tgccaggccg gagtgataac ccggattcgg
     8941 tgacgaggta aaattaatct cttgtgcaaa atgcccacca tttaataaca aaatagcgac
     9001 actcactaac aataaaacta aattaagaca cattacggca atacctccga ccgccgtaat
     9061 tcgcgcaatt ttattgatcc ctctggcggc gacacacgtc accagaatca tccagccgac
     9121 ggcgagcagc ccgacaacct gcgtaggctc aagccctgca atacgccagt gctgcgtcat
     9181 atcggcgcca aaaacaaaag tagaaaacgg tacccaaatt tttgccgccg tacttaccat
     9241 ccatatgaca tacgatgaaa accacataaa cgtgccaata aacgcgtaac gtggccccac
     9301 gctattattc atccacgaat agatcccgcc ctcttctttg cgataagcgg aacccatttc
     9361 agccatcatt aaggcgaatg gaataaaaaa cagcaaggca gaaaatatat accacgggat
     9421 tgcgctatac cccattaaat aaaacgccga cgggctattc gcaaaaccaa aaacagaagt
     9481 aaaaatcatc aggataagcc caataaggct catctttttt atcgtgtggg tcattcaacc
     9541 atcccttacg ctcgagcgcg tttgccagac gccgctcacc gattgacgcc gccttctttt
     9601 ttacgaaggt cagcgataaa aaaatcaaca caggattgat acctaaatgg catcaaagtt
     9661 ccagccttat gttgtggcaa acagaggata attgaaaaaa tatgctacaa aatggcgctt
     9721 atttcgccat tttatctcgc gaaagagtga atttcagatt tacgcccgat cgaccgtaaa
     9781 agcaatcacg tccgccaggc tttctgctcc cagcgccagc atcaccagac gatcaacacc
     9841 cagcgccacg ccggaacaat ccggtagacc ggcggccagc gcatccagta gattttggtc
     9901 aatcggctgc tgcggcagac cgcgcgcggc gcgcttacga ttgtcctgtt caaagcgctg
     9961 ttgttgctca cgtgcgtccg tcagttcgtg gaaaccattc gccagctcaa tacctttgta
    10021 gtacacctca aagcgctcgg cgacgcgatg atcctcggta ctgatttgtg ccagcgatgc
    10081 ctgactggcc ggaaagtgat aaataaaggt cggcttttct ttacctatat gcggctcaac
    10141 ccccatcgtg aacagcagtt gcagcaacgt atcacggtct tcttccgtat cggcgatatt
    10201 gcttaaatca agctttgccg ccgcctcacg cagctgcgtt ttatctgctg ataacgggtc
    10261 aatctccaga tggcgcagaa acgcctgttg ataggagaga ctttccgcag gttgacaatc
    10321 cagcacttgc tgaagcaaat catccacttc attcatcagg cggtacatat cgtaatgcgg
    10381 gcgataccac tccagcatgg tgaattccgg attatgatgt cgtcccatct cttcattacg
    10441 gaaactgcgg catagctgga aaaccggacc gcaccctgcc gccagcaggc gtttcatatg
    10501 gtattccgga ctggtcatta aatagaggtt gatcccctgg gaatggccag gtccgacgaa
    10561 acgcgtttcg aacgggaaca gatgaatgtc tgtgaccgtc gcctgactca tgcagggcgt
    10621 ctcaacctca agcactccac gatcggcaaa gaaacgacgg atttccgcca taatcgccgc
    10681 acgttttaat aaattgggga tggacgcgct cggctgccag gttgccgttt cgctcatgat
    10741 tctttctcca gtttaagaca aggtcacgaa gtctactcgc aacgcgcggg cgaaacaaat
    10801 tttgcgcagg cgtatcgggt gccttctgga gggtaaaaaa ag
//
LOCUS       DAJVSD010000148        10824 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.148, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000148 DAJVSD010000000
VERSION     DAJVSD010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10824)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10824)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10824
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.148"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            66..449
                     /gene="panM"
                     /locus_tag="OQP62_003025"
     CDS             66..449
                     /gene="panM"
                     /locus_tag="OQP62_003025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase autocleavage activator
                     PanM"
                     /protein_id="HCS1722515.1"
                     /translation="MKLTILRLEHFSAQDQIDLGKIWPEYSASSLSVDETHRIYAARF
                     NERLLGAVRVTLSGTQGALDSLRVREITRRRGVGQYLVEEVIRDNPNVSSWWMADVGV
                     EDRSVMAAFMQALGFTAQHDGWEKR"
     gene            427..561
                     /locus_tag="OQP62_003026"
     CDS             427..561
                     /locus_tag="OQP62_003026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722516.1"
                     /translation="MTAGRSAKRKPDGADAYPAYMPGEKIKTTSQFSKNFALQAGGKL
                     "
     gene            complement(645..1748)
                     /gene="livJ"
                     /locus_tag="OQP62_003027"
                     /pseudo
     CDS             complement(645..1748)
                     /gene="livJ"
                     /locus_tag="OQP62_003027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026223.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="branched chain amino acid ABC transporter
                     substrate-binding protein LivJ"
     gene            complement(2070..2924)
                     /gene="rpoH"
                     /locus_tag="OQP62_003028"
     CDS             complement(2070..2924)
                     /gene="rpoH"
                     /locus_tag="OQP62_003028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HCS1722517.1"
                     /translation="MTKEMQNLALAPVGNLESYIRAANAWPMLSADEERALAERLHYQ
                     GDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLV
                     SFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARE
                     LGVSSKDVREMESRMAAQDMTFDMSSDDESDSQPMAPVLYLQDKSSNFADGIEDDNWE
                     EQAANRLTDAMQGLDERSQDIIRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMK
                     KLRAAIEA"
     gene            complement(3170..4225)
                     /gene="ftsX"
                     /locus_tag="OQP62_003029"
     CDS             complement(3170..4225)
                     /gene="ftsX"
                     /locus_tag="OQP62_003029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HCS1722518.1"
                     /translation="MNRRDAINQIRQFGGRLDRLRKSRGGTGGGRNAPGRQKPTPKPN
                     SRKTNVFNEQVRYAWHGALQDLKSKPLATFLTVMVIAISLTLPSVCYMVYKNVNQAAT
                     QYYPSPQITVYLQKTLDDDAAARVVGQLQAEQGVEKVNYLSREDALGEFRNWSGFGGA
                     LDMLEENPLPAVAVVIPKLDFQSTASLNTLRDRISQINGIDEVRMDDSWFARLAALTG
                     LVGRVSAMIGVLMVAAVFLVIGNSVRLSIFARRDTINVQKLIGATDGFILRPFLYGGA
                     LLGFSGAFLSLILSEILVMRLSSAVTEVAQVFGTKFDLNGLSFDECLLLLLVCSMIGW
                     IAAWLATVQHLRYFTPD"
     gene            complement(4218..4886)
                     /gene="ftsE"
                     /locus_tag="OQP62_003030"
     CDS             complement(4218..4886)
                     /gene="ftsE"
                     /locus_tag="OQP62_003030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HCS1722519.1"
                     /translation="MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTL
                     LKLICGIERPSAGKIFFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI
                     PLIIAGASGDDIRRRVSAALDKVGLLDKARNFPIQLSGGEQQRVGIARAVVNKPAVLL
                     ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRQLVLSDGHLHGG
                     LANE"
     gene            complement(4889..6364)
                     /gene="ftsY"
                     /locus_tag="OQP62_003031"
     CDS             complement(4889..6364)
                     /gene="ftsY"
                     /locus_tag="OQP62_003031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HCS1722520.1"
                     /translation="MAKQKKRGFFSWLGFGDKEQKQEQTEEQQIVEEQRPVEPPVETA
                     ADVDAQTPAHSKAETEAFAEEVVDVTEKVQESEKPQPVEPEPTAAIEMAAPQIAVERE
                     ELPLPEEVKDEAISPEEWQAEAETVEVIAAVEEEGENAAKFTDEELEAQALAAQAAEE
                     AVMVVPPAEEDAPVEAIVQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKID
                     DDLFEELEEQLLIADVGVETTRKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKV
                     DEPLNIEGKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQL
                     QVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELK
                     KIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGV
                     IFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED"
     gene            6490..7086
                     /gene="rsmD"
                     /locus_tag="OQP62_003032"
     CDS             6490..7086
                     /gene="rsmD"
                     /locus_tag="OQP62_003032"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase"
                     /protein_id="HCS1722521.1"
                     /translation="MKKPTHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLF
                     NWLAPVMVDAHCLDCFAGSGALGLEALSRYAAQATLLEMDRAVSQQLQKNLATLKANN
                     ARVVNTNTLAFLSQPGTPHHVVFVDPPFRKGLLEETLQLLETQGWLADDALIYVESEV
                     ENGLPPVPANWALYREKVAGQVAYRLYQRDAQGENDVD"
     gene            7076..7345
                     /locus_tag="OQP62_003033"
     CDS             7076..7345
                     /locus_tag="OQP62_003033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1145 family protein"
                     /protein_id="HCS1722522.1"
                     /translation="MLINLGRLLMLFVWAFLILNLVHPFPRPLNIFVNVALVFMALMH
                     GMQLALLKSTIPKAGPQMTTGEKIRIFLFSVFELLVWQKKFKNKK"
     gene            complement(7367..7738)
                     /locus_tag="OQP62_003034"
     CDS             complement(7367..7738)
                     /locus_tag="OQP62_003034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2500 domain-containing protein"
                     /protein_id="HCS1722523.1"
                     /translation="MSKPPLFFIIIIALIVVAASFRFVQQRREKAANEAAPLQQKQVV
                     VSNKREKPVNDRRSRQQEVSPAGTSMRYEASFKPLNGGLEKTFRLQAQQYHALTVGDQ
                     GTLSYKGTRFVGFVSRTPDNE"
     gene            7880..8506
                     /locus_tag="OQP62_003035"
     CDS             7880..8506
                     /locus_tag="OQP62_003035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysoplasmalogenase"
                     /protein_id="HCS1722524.1"
                     /translation="MLWSFIAVCLSAWLYVDASYRGPAWQRWVFKPVTLLLLLLLAWQ
                     APMFDAISYLVLAGLCASLVGDALTLLPRQRLLYAVGAFFLSHLLYTIYFASQMTLSF
                     FWPLPLALLIVGALLIAVIWTRLEELRWPVCTFIAMTLVMVWLAGELWFFRPTAPALS
                     AFTGATLLFIGNIVWLGSHYRRRFRADNAIAAACYFAGHFLIVRSLYL"
     gene            8587..10785
                     /gene="zntA"
                     /locus_tag="OQP62_003036"
     CDS             8587..10785
                     /gene="zntA"
                     /locus_tag="OQP62_003036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase
                     ZntA"
                     /protein_id="HCS1722525.1"
                     /translation="MSTPDTDGKKVPPFTSFRLAPAIQKADSCCCEEHCASSAPVSTA
                     VAGTRYTWKISGMDCAACARKVENAVRQIRGVNQAQVLFATEKLVVDADTDLRAQIEH
                     AVQKAGYTLRSEDSRDAAPESRLKENLPLITLIIMMAISWGLEQFNHPFGQLAFIVTT
                     LVGLYPIARQALRLMKSGSWFAIETLMSVAAIGALFIGATAEAAMVLLLFLIGERLEG
                     WAASRARKGVSALMALKPETATRLRDGVREEVAINTLRPGDIIEVAAGGRLPADGKLV
                     SGFASFDESALTGESIPVERATGDKVPAGATSVDRLVTLEVLSEPGASAIDRILTLIE
                     EAEERRAPIERFIDRFSRIYTPVIMVIALLVTLIPPLMFDGGWQEWIYKGLTLLLIGC
                     PCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRITQVAFDKTGTLTIGKPRVTA
                     IHPASGISEAELLALAAAVEQGATHPLAQAIVREAQTRDLAIPTAESQRTLAGTGIEA
                     QVNGERILICAAGKQPAAAFAGQISELENAGQTVVLVLRNETVVGVLALQDTLRDDAR
                     DAIRELHQLGVNGVILTGDNPRAAAAIAGELDLAFKTGLLPEDKVRAVTALNQQAPLA
                     MVGDGINDAPAMKAASIGIAMGSGTDVALETADAALTHNRLRGLAQMITLARATHANI
                     RQNITIALGLKAIFLVTTLLGFTGLWLAILADTGATVLVTANALRLLRKN"
BASE COUNT         2314 a         3135 c         2876 g         2499 t
ORIGIN      
        1 gaaagcatct ggcctgcctg tttcggtaca ctgatcgcat cttttgaaat cgggacaagc
       61 cgtcgatgaa gctgaccatt cttcgtttag aacactttag cgctcaggat cagatcgatc
      121 tgggcaaaat ctggccggaa tattccgcct cctcattaag cgtagatgaa acgcaccgga
      181 tttatgccgc gcggtttaac gagcgtttgt tgggcgccgt aagagtgacg ctgagcggaa
      241 cgcagggcgc gctggattcc ttacgcgtgc gtgaaatcac ccgtcgccgc ggcgtcgggc
      301 aatacctggt agaagaggtc atccgcgata atcccaacgt ctcgtcgtgg tggatggcgg
      361 atgtcggtgt tgaagaccgc agcgtgatgg ccgcgtttat gcaggcgtta ggttttaccg
      421 cccagcatga cggctgggag aagcgctaaa agaaagccgg atggcgctga cgcttatccg
      481 gcctacatgc cgggagaaaa gataaaaacc acctcgcaat tttccaagaa tttcgcgttg
      541 caggcaggcg gcaagttatg aaatccccgg aagcttacat aagtaagtga ccggggttga
      601 ataacgtagc caacgcacct gcagcgcgaa aggcgccagg aaaattactt agcgtctgtc
      661 gccgtaccat tcgcatgcca gtcaaacacg ccgaactcaa atcctttcag atcgcctttc
      721 tcatcccacg acagcggtcc cattacggtg tcgaccgtgg tgcctttcag gtatttggca
      781 atttccgccg gatcgtcaga ctggttcaga cccgcctgca acgattgcag cgcggcgtag
      841 gtggtccaca cgaatgcgcc gctaggatct tgtttcttgg ctttgatggc atccacaatc
      901 ggtttgttcg ccgggacctg atcgtagttc ttcggtttgg tgaccagtaa gccttccgcc
      961 gactctccgg cgatgttaga cagcgagacg ttcgccaccc cttccggccc cataaactgg
     1021 gttttcagcc ctgcggcgcg ggactggcgc aaaatctgcc ccatttccgg gtgataaccg
     1081 ccgtagtaga caaagtcgat attctctttt ttcagacgcg ctaccagagt ggagaaatct
     1141 ttttcgccgg cggtaatgcc gtcaaagaat acgacgttaa cgccgccttt cttcagaccg
     1201 tcctgcaccg cgcgcgccag cccttcgccg tactgctgct tatcgtggat aatcgcgatg
     1261 cgctgcggtt ttaccttctc cagaatatac tttgccgccg ttggtcccta gtcagagtcc
     1321 aggccggtcg tgcgcaaaat caggttatag ccgcgcgcgg tcagctccgg tgcggtcgcc
     1381 gccggggtta tcatcaggat gccttcgtct tcgtagatat cagacgctgg ctgtgtggaa
     1441 gaggagcata agtgaccgat aacatacttg atgccgtcgt tcaccacttt gttagcgacc
     1501 gctaccgcct gttttggatc acaggcgtcg tcatatttca ccgcgacgag cttatcgcct
     1561 ttaataccgc ctttcgcatt gatatcggca attgcctgct ccgcaccggt aaattcctgg
     1621 tcgccatact gcgccaccgg accggacatc gcgccgacaa ccgcgacttt aatgtcctct
     1681 gcgaatgcca tatggcttaa tgacagggcg atacatcctg ccaataacgt tttacccttc
     1741 atattcatcc tgataatccc cattattctg gttgttacgt gtgttgtggt gttattgttc
     1801 agcactttat ttcgattatt ggctagctac ccgtgcttta gcagcatact ctgctaaaac
     1861 atacccgatt tttattattt tggaatagct aaatttacat ccagataaca gatttgtgtc
     1921 ggtgggggag aggaagggcc cgtaggccag ataagcgaag cgacatcggg caaacgtgtt
     1981 gccggatagc agcgtaaacg ccttatccgg cctacaaaaa acaaaacccc cgaattcaca
     2041 ttcgagggtt cattggcaat tcgcgaagat tacgcttcga tcgcagcgcg aagctttttc
     2101 atggcgttct tttcaagctg gcgcacacgc tcagcggaga cgccgtaacg atcggccagc
     2161 tcctgcaacg tagacttatt gtcttcgtcc agccagcgag cgcggataat atcctggcta
     2221 cgctcgtcga gcccctgcat cgcatcggtc agtcggttag cggcctgctc ttcccagtta
     2281 tcgtcttcaa tgccgtcggc aaagttagac gatttatcct gcagatacag caccggcgcc
     2341 attggctggc tgtcggactc atcgtccgaa gacatgtcaa acgtcatgtc ctgcgccgcc
     2401 atacgcgact ccatctcacg cacgtcttta ctggaaacac ccagttcgcg cgccaccatt
     2461 tcaacctcat cctgattaaa ccagcccaga cgctgcttgg ttttacgcag attaaagaac
     2521 agcttacgct gcgctttcgt ggttgcgact ttaacgatac gccagttacg cagcacgtat
     2581 tcgtgaattt ctgctttaat ccagtgtacg gcgaaggaga ccaggcgcac gcctacttcc
     2641 gggttgaaac gacgtacggc tttcatcagg ccgatgttgc cttcctggat caaatccgcc
     2701 tgcggcagac catagcccgc atagttacga gcaatatgaa caacaaagcg caggtgagac
     2761 aggatcagcg ttttagctgc ttccagatcg ccctggtaat gcagcctttc agccaatgcc
     2821 cgctcctcgt cagccgataa catcggccac gcgttcgccg cccggatata agattccagg
     2881 ttgccaacag gggctaaagc taaattttgc atttctttgg tcattcaaat cctctcaatc
     2941 agtattgcct ggcaccgtca gcgagcaaca accgtgccaa agccgatgag caacgagaat
     3001 atcatccact cttttatcag acagtgattt tatccacaag ttcaatgtaa cactgtgcat
     3061 aatttacaca cataatgtga catgaagatg aaacgcgggg aagagacaac agggactctt
     3121 tccctgcgaa cggaagccca ttgcagggaa agattatacc acgattttat caatcgggag
     3181 taaagtaacg taaatgttgc accgtagcca gccaagcggc gatccagccg atcatggaac
     3241 agaccagcag cagcaacagg cactcatcga acgataaacc attgagatca aacttcgtgc
     3301 cgaagacctg cgccacttca gtcaccgccg atgataaacg catcaccaaa atttcagaca
     3361 atatcagtga aagaaacgcg ccggaaaaac cgagcaatgc gccgccgtag aggaacggac
     3421 gcaggataaa gccatcggtc gcgccaatca gcttttgcac gttaatggtg tcgcgacggg
     3481 caaaaatgct caggcgcacg ctgttgccga taacgaggaa gaccgccgcg accatcagca
     3541 cgccaatcat cgccgacacg cggcccacca gcccggtgag cgccgccaga cgcgcaaacc
     3601 agctatcatc catgcggact tcgtcaatgc cgttaatctg cgagatacgg tcgcgcagcg
     3661 tattaagcga ggcggtactt tgaaagtcca gcttggggat caccaccgcc accgccggta
     3721 gcgggttctc ttccagcatg tccagcgcgc cgccaaaacc cgaccagttg cggaattcgc
     3781 ccagcgcgtc ctcacgggac aggtagttga ccttctcaac gccctgctcg gcctgaagct
     3841 gcccaacgac ccgcgccgcc gcgtcatcat ccagcgtttt ttgcagataa acggtgatct
     3901 gcggcgacgg atagtactga gtcgccgcct ggttgacgtt cttatagacc atgtaacaga
     3961 cgctgggcag cgtcagggag atggcgatca ccatcaccgt cagaaacgtc gccagcggtt
     4021 tgcttttcag atcttgcagc gcaccgtgcc aagcatagcg cacctgttca ttaaaaacat
     4081 ttgttttacg tgagttcggt ttcggcgtcg gcttctggcg tcctggcgcg ttgcgcccgc
     4141 cgcctgttcc gccgcgagac ttacgcagtc gatccagccg tccgccgaac tgcctgattt
     4201 ggttaatcgc gtcgcgccta ttcattggcc aggcctccat gcagatgtcc atcgctcagg
     4261 acgagctgcc tataggaacg acgcgagata agtccaatat cgtgcgtcgc catcagtacc
     4321 gtcaccccta cgcggttaaa ctcttcaaac agacgtaaaa tcccttccga caacgcgtcg
     4381 tccaggttcc cggtcggttc atccgccagc aataccgctg gcttattgac caccgcgcgg
     4441 gcgatgccca cgcgctgttg ttcgcctccg gagagttgaa tcgggaagtt tctcgctttg
     4501 tccagtagtc caaccttatc cagcgccgcc gacacacgac gacggatatc atcgccgctg
     4561 gcgccggcaa tgattaacgg tatcgccaca ttgtcataga ccgtgcgatc catcagcaga
     4621 tggtgatcct ggaaaatcat cccaatctgg cggcgcaaaa acggcacttc gcggtttttc
     4681 aggcgcgtaa tatcatgccc gctgaagaag attttgccgg cgctgggccg ctcaatccca
     4741 cagattagct tcagcagggt acttttcccc gcgccggagt ggccggtcag aaacgccatc
     4801 tcgcctggcc gcatatggaa tgtcactccc tgcagcgctt gtctcccgcc gagataggcc
     4861 ttgctgacat gttcaaagcg aatcattgtt aatcctctcg ggcaaaaagt gcctcaataa
     4921 aatcgtccgc cttaaacgga cgcaaatcct cgatacgttc gcccacgcca atgtaacgga
     4981 taggaatgcc aaactggtca gctaccgaga aaatcacccc gcctttcgcc gtaccgtcca
     5041 gcttggtcag ggtaataccg gttaagccca ccgcttcatg gaacagtttg gcctggctta
     5101 ccgcgttctg tccggtgctg gcgtcaatgg tcagcataac ttcatgtggc gcttcttcgt
     5161 ccagcttttt catgacgcga acgatttttt tcagctcttc catcaggtgc gacttgttct
     5221 gcaaacgccc tgccgtatcg gcaattaaca catccacatt acgcgccttc gcggcctgga
     5281 tagcgtcaaa aatcaccgag gcggagtccg cgccggtatg ctgggcgata accggaatgt
     5341 tgttacgctg tccccagacc tgtagctgtt cgaccgccgc cgcgcggaaa gtatcccccg
     5401 ccgccagcat cactgattta ccctgctgct caaactggcg cgccagttta ccgatagtgg
     5461 tggttttacc cacgccgttc acgccaacca tcagaataac aaaaggcgtt ttaccttcaa
     5521 tattaagcgg ttcgtctacc ttcgccagaa tctcgcccat ctcgtctttc aacagaccat
     5581 acagcgcctc ggcatcttta agctgtttgc ggctggcgcc ttccgtcaga ttagcgataa
     5641 tcttacgcgt ggtttccacc ccgacatcag cgatgagcaa ctgctcttcc agctcctcga
     5701 acaaatcatc gtcgattttc ttgccgcgga acagactgat aaatccggaa ccgagatttt
     5761 ctttggtttt cagcagactg cgtttcaggc gggcaaagaa accttcttta gtcggttttt
     5821 cctgctcctg aacgatcgct tccaccggcg cgtcttcttc cgccggcgga acaaccatca
     5881 ccgcctcttc cgccgcctga gcggccagcg cctgcgcttc cagctcttcg tcggtgaatt
     5941 tcgccgcgtt ttcgccctct tcttctaccg cggcaatgac ctctacggtt tccgcttcgg
     6001 cctgccactc ttccggcgag atagcctcgt ctttgacctc ttccggcagc ggcaattcct
     6061 cgcgttccac cgcgatctgc ggcgctgcca tctcaatggc cgccgtgggc tccggctcta
     6121 ccggctgcgg tttttcgctc tcctgaactt tctcagtaac gtccaccacc tcttccgcaa
     6181 aggcttctgt ttctgctttg ctgtgcgcgg gcgtttgcgc gtctacgtct gccgccgttt
     6241 caacaggggg ctcaaccggt cgttgttcct caacaatctg ctgttcttcg gtctgttcct
     6301 gcttctgctc tttatcaccg aagcccaacc aggaaaagaa gccacgtttt ttctgttttg
     6361 ccatctgcga ctacacccct cgcggcgcta tatacatgga agctaaaaaa atgatgaaat
     6421 agtctatcac ttaacttaat tcacatcacc gcctggaata acttgcaaca ggcggttcga
     6481 gcaagagaaa tgaaaaaacc gactcactct ggcagcggcc aaatccgcat tattggcggg
     6541 caatggcgtg gccgtaaatt accggttccg gacagcccgg gtctgcgtcc taccaccgat
     6601 cgcgtgcgcg aaacgttatt taactggctg gctccggtaa tggtagacgc ccattgtctg
     6661 gattgctttg ccggcagcgg cgcgctgggt ctggaagcgc tatcgcgtta tgcggcccag
     6721 gcaacgttac tggaaatgga tcgcgccgta tcgcagcagt tgcaaaaaaa tctggcgacg
     6781 ctgaaagcca acaatgctcg cgtcgtcaat accaatactc tggccttcct cagccagccg
     6841 gggacgccgc atcacgtcgt ctttgtcgac ccgccgtttc gtaaaggact gctggaagag
     6901 acgttacaat tgctagaaac ccagggatgg ctggccgacg acgcgctaat ctacgtagaa
     6961 agcgaggtgg aaaacggtct gccgcccgtt ccggcgaact gggcattgta tcgagaaaag
     7021 gtggccggac aggtcgctta tcgtctgtat cagcgcgacg cgcaaggaga aaatgatgtt
     7081 gattaatctg ggccgcttat taatgctctt cgtgtgggca tttttgattc ttaatctggt
     7141 gcatcccttc ccgcgcccgc tcaatatctt cgtcaacgtg gcgttggtgt tcatggcgct
     7201 gatgcacggt atgcagttgg cgttgctgaa atcaacgata ccgaaagcgg gtccgcagat
     7261 gacgacggga gagaaaatcc gcattttcct gttcagcgtg tttgagctgc tggtctggca
     7321 gaagaagttt aagaacaaaa aataacgttt gctgccggat gacggtttat tcgttatccg
     7381 gggtacggct aacaaatccg acgaaccgcg ttcccttata gcttagcgta ccttgatcgc
     7441 ccaccgtcaa agcgtggtac tgctgcgctt gtaaacggaa cgttttttcc agaccgccat
     7501 tgagcggctt aaaactggcc tcatagcgca tactggttcc cgccgggctc acttcctgct
     7561 ggcgagagcg tcggtcgtta accggcttct cccgtttatt gctgaccacg acctgctttt
     7621 gctgtaacgg cgccgcctca ttagcggctt tttcccgccg ttgctgaacg aagcggaacg
     7681 acgcggcaac tacgattaat gcaatgatta taatgaagaa aagcggtggc ttactcatac
     7741 tgttaacctg tcagaaaatg cggaaataag cataccctgc ccgttatagt gttgtcatct
     7801 gaccgtcacg gcctctacac tgaataatag agccgcaagc ataccgtttg cgaaaaaata
     7861 acgaattcaa ggaattaaga tgctttggtc gtttatcgct gtctgcctgt ccgcatggct
     7921 gtatgtggac gcctcctatc gcgggccagc ctggcaacgc tgggttttta agcccgtcac
     7981 gttattactg ttgctgttac tggcctggca agcgccgatg tttgacgcca tcagttatct
     8041 tgtgttggcc ggactgtgcg cctcgctggt cggcgatgcg ttaacgctct taccgcgtca
     8101 acgcctgctg tacgccgtcg gggcattttt cttatcgcat ctgctctaca ccatttactt
     8161 tgccagccaa atgacgttgt cgttcttctg gccgctgccg ctggcgttac tgatagtcgg
     8221 cgcgttgctt atcgccgtta tctggacgcg actggaggag ctacgctggc cggtatgtac
     8281 ttttatcgcc atgacgctgg tcatggtctg gctggcgggc gaactgtggt tcttccgccc
     8341 aacggcgcca gccctttcgg cctttaccgg cgcgacgctg ctgttcatcg gcaatatcgt
     8401 ctggctgggt agccattacc gccgccgttt ccgggcggat aacgcgattg ccgccgcctg
     8461 ctactttgca ggacacttcc tgattgttcg ctcgctgtac ctgtaaataa tagcgcttga
     8521 ctctggagtc gactccagag tgtatcctcc ggttaatgag aaaattatca tcaaccggag
     8581 gacgttatgt cgacccctga taccgatggc aaaaaagtcc cgccctttac ctccttcaga
     8641 ttagccccgg caatacagaa ggccgatagc tgctgctgcg aagaacattg cgcgtccagc
     8701 gcgcctgttt ctactgccgt ggcaggcacg cgctatacct ggaaaatctc cggcatggac
     8761 tgcgccgcct gcgcccgaaa agtggagaat gcggtacgcc aaattcgcgg cgtcaaccag
     8821 gcgcaagtgc tgttcgccac cgaaaagtta gtggtcgatg ccgacaccga cctccgcgcg
     8881 caaattgaac acgccgtaca gaaggcgggt tataccttgc gtagtgaaga ttcgcgcgac
     8941 gccgcgcctg aatctcgtct taaagagaac ctgccgctta ttacgctgat cattatgatg
     9001 gcgataagct gggggctgga gcaatttaac cacccgttcg gccaactggc ctttatcgtc
     9061 accactctgg tcggtctgta tcctattgcc cgccaggcgc tgcggctgat gaaaagcggc
     9121 agttggttcg ctattgaaac gctgatgagc gtcgccgcca ttggcgcgct gtttataggc
     9181 gcgacggcgg aggcagcaat ggtattgctg ctgttcctca tcggcgagcg cctggaagga
     9241 tgggccgcca gccgcgcccg taaaggcgtc agcgcgttaa tggcgcttaa accggaaacg
     9301 gcgacccgtc tgcgcgacgg cgtgcgggaa gaggtcgcta ttaataccct gcgaccgggc
     9361 gatattatcg aagtcgccgc cggggggcgt ttacccgccg acggtaaact ggtttccggt
     9421 ttcgccagct ttgatgaaag cgcgctcacc ggcgagtcta tccctgtgga gcgcgcaacg
     9481 ggcgacaaag tcccggcagg cgcgaccagc gttgaccgtc tcgtcaccct ggaggtgcta
     9541 tctgaacctg gcgccagcgc gattgaccgt atcctgacgc tgattgaaga ggcggaagag
     9601 cgccgtgcgc ccattgagcg gtttattgac cgtttcagcc gcatctatac gccagtcatt
     9661 atggtcatcg cgctgctggt gacgcttatt ccgccgctga tgttcgatgg cggctggcag
     9721 gagtggattt ataaagggct gacgctgcta ttaatcggtt gcccgtgcgc gctggtgatc
     9781 tccacgcccg cggccattac ctccgggctg gcggcggcgg cacggcgcgg cgcattgatt
     9841 aaaggcggag cagcgctgga gcaactgggc cgtatcacgc aggttgcctt tgataaaacc
     9901 ggtacgttga ccatcggtaa accacgggtg acggcgattc atccggcaag cggtatcagc
     9961 gaggctgaac tgttggcgct ggcggcagcc gtagaacaag gcgctacgca cccgctggcg
    10021 caggctattg tccgcgaagc gcagacacgc gatctggcga tcccgacggc ggaatcgcag
    10081 cgaacgctgg ccggcaccgg gattgaagcg caggttaacg gcgaacgtat tctgatttgc
    10141 gcggcgggaa aacagcctgc ggcagcgttt gccgggcaaa ttagcgaact ggaaaacgcc
    10201 gggcagacgg tggttctggt gctacgtaac gagaccgttg ttggcgtcct cgccctccag
    10261 gatacgttgc gtgacgatgc gcgcgacgcc atccgcgaac tgcatcagtt aggcgttaac
    10321 ggcgtgattc tgaccggcga taacccacgg gcggcggcag cgattgccgg cgagctggat
    10381 ctggcgttta aaaccggact actgccggaa gataaggtgc gggcagtcac cgcccttaac
    10441 caacaagcgc cgctggcgat ggtgggcgac ggcattaatg atgcgcccgc gatgaaagcc
    10501 gccagtatcg gaattgcgat gggcagcggt actgacgtcg cgctggaaac ggctgacgcc
    10561 gcccttactc ataaccgtct gcgcgggtta gcgcagatga ttacgctggc gcgcgctacc
    10621 cacgcgaata tccggcagaa catcaccatt gcgctggggc tgaaagccat tttcctggtg
    10681 acgacgctac tgggttttac cgggctatgg ctggcaatcc tggcggatac gggagccacg
    10741 gtattagtga ccgccaacgc gctacgtttg ctgcgtaaaa actaatcttc tcccacccgg
    10801 cggcatgtcg ccgggttatc ccgc
//
LOCUS       DAJVSD010000149        10794 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.149, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000149 DAJVSD010000000
VERSION     DAJVSD010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10794
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.149"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(168..674)
                     /gene="tpx"
                     /locus_tag="OQP62_003037"
     CDS             complement(168..674)
                     /gene="tpx"
                     /locus_tag="OQP62_003037"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HCS1722526.1"
                     /translation="MSQTVHFQDNPVTVANVIPQAGSKAQAFTLVAKDLSDVSLSQYA
                     GKRKVLNIFPSIDTGVCAASVRKFNQLATEVENTVVLCVSADLPFAQSRFCGAEGLSN
                     VITLSTLRNNEFLKNYGVEIVDGPLKGLAARAVIVLDENDNVIFSQLVDEITHEPDYD
                     AALNVLKA"
     gene            790..1755
                     /gene="ycjG"
                     /locus_tag="OQP62_003038"
     CDS             790..1755
                     /gene="ycjG"
                     /locus_tag="OQP62_003038"
                     /EC_number="5.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-Ala-D/L-Glu epimerase"
                     /protein_id="HCS1722527.1"
                     /translation="MRSVKVYEETWPLHTPFVIARGSRSEAHVVVVELEEEGVKGIGE
                     CTPYPRYGESDASVMAQIMSIVPQLENGLTREALQKLLPAGAARNAVDSALWDLQARQ
                     RQQSLAGLLGVTPSPVFTTAQTVVIGTPEQMAASAAALWKKGATLLKIKLDARLISER
                     MVAIRSAVPEATLIVDANESWRPEGLAARCQLLADLNVAMLEQPLPAQDDAALENFIH
                     PLPICADESCHTRSSLKALTGRYDMINIKLDKTGGLTEALALATEAREQGFGLMLGCM
                     LCTSRAISAALPLMPQVSFADLDGPTWLAVDVEPALRFTTGQLHL"
     gene            complement(1730..2458)
                     /gene="mpaA"
                     /locus_tag="OQP62_003039"
     CDS             complement(1730..2458)
                     /gene="mpaA"
                     /locus_tag="OQP62_003039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide amidase MpaA"
                     /protein_id="HCS1722528.1"
                     /translation="MTVTRPRAERGAFPPGTEHYGRSLLGAPLIWFPAPAVNRESGLI
                     LAGTHGDETSSVVTLSCALRTLNPSLRRHHVVLAVNPDGCQLGLRANANGIDLNRNFP
                     AANWKAGETVYRWNSRAQERDVVLLTGDHPGSEPETQALCQLIHRLQPAWVVSFHDPL
                     ACIEDPRRSELGEWLADAFALPLVTSVGYETPGSFGSWCADLNLHCITAEFPPVSADE
                     ASEKYLLAMSNLLRWHPKDGVDPS"
     gene            2648..4261
                     /locus_tag="OQP62_003040"
     CDS             2648..4261
                     /locus_tag="OQP62_003040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1722529.1"
                     /translation="MRHSVSVTCCALLVSSFSLAYAADVPGGTVLAEKQELVRHIKDE
                     PASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIIPGVASQWKSNDNRIWTFTLRDDA
                     QWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGITNAQAIIDSKVTPDQLGVSA
                     VDAHTLRVQLDKPLPWFASLTASFAFYPVQKANVESGKDWMKPGKLIGNGAYVLKERV
                     VNEKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLAGDIDITESFPKNMYQKL
                     LKDIPGQVYTPPQLGTYYYAFNTQKGPTADSRVRLALSMTIDRRLMAEKVLGTGEKPA
                     WHFTPDVTAGFKPDPSPFEQMSQEELNAQAKTLLRAAGYGSQKPLKLTLLYNTSENHQ
                     KIAIAVASMWKKNLGMDVKLQNQEWKTYIDSRNTSNFDVIRVSWVGDYNEPSTFLSLL
                     TSTHTGNISRFTNPTYDKILTQATMENTAEARNADYNAAEKILTEQAPIAPIYQYTNG
                     RLIKPWVKGYPITNPEDVAYSRTMYIVKH"
     gene            complement(4358..5287)
                     /locus_tag="OQP62_003041"
     CDS             complement(4358..5287)
                     /locus_tag="OQP62_003041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic alcohol reductase"
                     /protein_id="HCS1722530.1"
                     /translation="MKQSNNQVGEKVLVLGAGQLGASVLASLVPAITQRNGSVCVIVS
                     GRSRDKQSKRRSSIHQQLADAGARFIPVDIADSSVAALKDQFHGFDTIINCMGFVAGA
                     GTQIKITRAVLEAGVKRYFPWQFGVNYDVVGKGSGQPVWDEQYDVRTLLREQNVTEWV
                     IVSTGLFTSFLFEPAFDVVNLDQKTINALGGWERQVTVTSPADIGRLTTEIYLHQPRI
                     TNEVVFVAGETTSYAKLAKTVERVTQQTFTRGVLTLPDLQEQLRLHPHDPMLRYRVAF
                     ARGDGMWWPMSDTWNAQHHLPTQDIATWLKTQQ"
     gene            5406..6311
                     /locus_tag="OQP62_003042"
     CDS             5406..6311
                     /locus_tag="OQP62_003042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1722531.1"
                     /translation="MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWL
                     KIQLLQRTTRKLSVTAEGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSL
                     ARHCIIPTLPAFLCQYPELELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLA
                     SFNWVIAASPTYIERYGSPENLDDLQKHHAVGYLNHRTGRTTDWFFTREGEDYAMRVQ
                     ETLVVDDTDAYIQAGIQGLGLIRVASYLVAPYLHSGALVTCMDNHFYDLPLALVYPQN
                     RFLSPAVRAFYDWCKTALSQPEPLR"
     gene            6588..7457
                     /locus_tag="OQP62_003043"
     CDS             6588..7457
                     /locus_tag="OQP62_003043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HCS1722532.1"
                     /translation="MEYSILSNNLKMPMVGFGVFKVTDKEECQQSVLSAIRSGYRLID
                     TAAVYGNEDAVGDAVREAIATGLCTREELFITSKLWVQDMANYDLAKAGIEASLKKSG
                     LDYFDLYLLHQAMGDYFSAWRALEDAYEAGKLKAIGVSNFYAHVLANFCETVRITPMV
                     NQVELHPYFAQPAALETMKHYNVQPEAWAPLGGGRHKPYENVMLQRIADAHQKTIAQV
                     VLRWNVQRGVTVIPKSTRQERIEENFAIWDFSLTDNEMAQINALDLGYVGEAVKHFNP
                     EFVRGCLGVKIHD"
     gene            complement(7548..8261)
                     /gene="bdcA"
                     /locus_tag="OQP62_003044"
     CDS             complement(7548..8261)
                     /gene="bdcA"
                     /locus_tag="OQP62_003044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1722533.1"
                     /translation="MMLFRNKSVLVLGGSRGIGAAIVRRFSADGASVVFSYAGSREAA
                     EKLAAETGSTAIQTDSADRDAVISLVREYGPLDILVVNAGVALFGDALEQDSDAIDRL
                     FRINIHAPYHASVEAARNMPEGGRIIIIGSVNGDRMPIPGMAAYAASKSALQGLARGL
                     ARDFGPRGITINVVQPGPIDTDINPEDGPMKELMHSFMAIKRHGRPEEVAGMVAWLAG
                     PEASFVTGAMHTIDGAFGA"
     gene            8339..8929
                     /locus_tag="OQP62_003045"
     CDS             8339..8929
                     /locus_tag="OQP62_003045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HCS1722534.1"
                     /translation="MTTKHSRTPGRPRQFDPEQSIETAQHLFHSRGYDAVSVADLTKA
                     FGINPPSFYAAFGSKLGLYTRVLKRYRMTDAIPLGALLRHDRPTAKCLIDVLMEAARR
                     YAADPDATGCLVLEGAHCNDKPAREAACEFYIAAENLIRTYVAMRYPQEADRTTDFMG
                     TLMAGLSAKARAGYSLERLQESVLLAGDVLERLLPD"
     gene            9058..9294
                     /locus_tag="OQP62_003046"
     CDS             9058..9294
                     /locus_tag="OQP62_003046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001168019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="HCS1722535.1"
                     /translation="MQKCSLITVLSLSVLMLAGCTTTYTMTTRTGEIIETQGKPEVDT
                     ATGMTKYADVYGYHRVIKTSEIVQTTEGASKLDW"
     gene            complement(9508..10617)
                     /locus_tag="OQP62_003047"
     CDS             complement(9508..10617)
                     /locus_tag="OQP62_003047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_448089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722536.1"
                     /translation="MYIIRGDIIHIFEIRADDMYTTIRNTTLAMVACFSYIAHASTHP
                     PLIITRGAGGDASGAAVIHDNWRHGTPDLVNLTDIPIDKIRPEKYRCVLIIGQGAIKE
                     MLLANNASAILSGKTVGLYTHLIDQNTLRLLRQLQNKVRFNLFFTRSQITLLKLRNIS
                     EYNFLSSKVNNVWGQDSLAIETVAPDRGNIPEKALPLKTTDYVIWLGGNYTTSSGTQR
                     IFTNDQIVVALKPLHNVISPNASIAIMLSPRFFDNSMSKEAKVKRLKAVLNTFSQNRV
                     TFYMSKEMLANLKEFDLPVQLSPSYAELMRMPWASATRHFASVDQYNLFADLIPKVTP
                     FLLEPNDADQALYATDYLNTRRVSLTQNILNHGCD"
BASE COUNT         2695 a         2583 c         2872 g         2644 t
ORIGIN      
        1 caaaaggggt tttaataact ggcttaaagc tgaaagcttt ccggaacccc cagcctagct
       61 gggggttttc catagacaaa aaaaagaagg cctccggata gaggccttct tgtgacaaaa
      121 gagcaccgcc tgtagcactg acaaacgtag cgccagcagg cgctggctta tgccttcagg
      181 acattaagcg cggcgtcgta atcgggctcg tgggtgattt catccaccaa ctggctgaaa
      241 ataacgttgt cgttttcgtc aagcacgatg actgcgcgcg ccgccaaacc tttcagcggg
      301 ccgtcaacga tttcgacgcc gtagtttttt agaaactcgt tattacgcag agtggaaagc
      361 gtaataacgt tgctcaggcc ttccgcgccg caaaaacgcg actgtgcaaa aggcaggtca
      421 gcagaaacgc acaatacgac ggtattctcc acttctgtgg ccagttgatt aaacttacga
      481 actgatgcgg cgcatacgcc agtatcaatg cttgggaaaa tattcagcac tttgcgtttg
      541 cctgcatatt ggctgaggga aacgtcagac aaatcttttg cgacaagagt aaaagcctgt
      601 gctttgctac cagcctgcgg aataacgttg gcaacggtga ccgggttatc ctggaaatgt
      661 acagtctgtg acataattat gttcctattt acttatagtt aacgtcgaaa tccagtttaa
      721 gtcattattc attaacacgg caaatactat ttgtagcaag ccgcgtccgg cgctatcaga
      781 ggggaagaga tgagatctgt taaggtatat gaggaaacct ggccgttaca tacgcctttt
      841 gttattgcgc gtggtagccg aagcgaagcg catgttgtcg ttgtcgaact ggaagaagag
      901 ggcgtaaaag gcatcgggga atgtacgcca tatccacgtt atggtgaaag tgatgcctcg
      961 gtcatggcgc aaatcatgag tattgtgcct cagttggaaa acgggctgac tcgcgaagca
     1021 ttgcagaaac tgttgccggc aggcgcggcg cgcaacgcgg tggatagcgc cttatgggat
     1081 ttgcaggccc gccagcggca gcaaagcctt gccgggctgc tcggcgtgac gccgtccccg
     1141 gtttttacta ccgcgcaaac ggtagtgata ggcacgccgg aacagatggc tgccagtgcg
     1201 gcggcactat ggaaaaaagg ggcgacgttg ctgaaaatta aactcgatgc tcgtctgatt
     1261 agcgaacgta tggtggcgat ccgctcggcg gtgccggagg cgacgctcat tgtggacgcc
     1321 aatgaatcgt ggcgcccaga agggctggcg gcgcgttgcc agttactggc ggatctgaat
     1381 gtcgcgatgc tggagcaacc gctgcccgcg caggatgacg ccgccctgga aaattttatt
     1441 catccgttgc ccatctgtgc agatgagagc tgccatactc gcagtagtct gaaagccctg
     1501 acggggcgct acgatatgat caacattaag ctggataaaa ccggcggtct gactgaggcg
     1561 ctggcgctgg caacggaggc gcgggagcaa ggattcggcc tgatgctggg ctgtatgctc
     1621 tgtacatcaa gagcgattag cgccgcgctg ccgcttatgc cgcaggtgag cttcgccgat
     1681 cttgatggcc caacatggct ggcggttgat gttgagcctg cgctacgctt tacgacgggt
     1741 caactccatc tttaggatgc cagcggagca gattcgacat cgccagcaag tatttttcgc
     1801 tggcttcatc ggcggaaaca gggggaaact cggcggtaat gcagtgcagg ttgaggtcgg
     1861 cgcaccagct gccaaacgaa ccgggcgttt cgtaacctac gctggtcacc agcggcaacg
     1921 caaacgcatc ggccagccac tcgcctagct cgctgcgacg tggatcttca atgcaggcta
     1981 gcggatcgtg aaaagagacg acccaggcgg gttggagtcg atgaattaac tggcaaagcg
     2041 cctgggtttc cggttctgag ccgggatggt cgccggttag cagcacgaca tcacgctctt
     2101 gcgcgcggct attccagcga taaactgtct cacccgcttt ccagttggcg gcgggaaagt
     2161 tacggtttag atcaatgcca ttcgcatttg cccttaaccc cagttgacag ccatcaggat
     2221 taacggcaag tacgacatga tgacggcgaa gggacggatt taaggtgcgt aacgcacagg
     2281 agagcgtcac cacggatgag gtttcatccc cgtgggtgcc agccagtatc aggccgcttt
     2341 cgcgattgac ggcaggcgcc ggaaaccaga ttagcggcgc gcctagtagc gaacgtccat
     2401 aatgttcagt gcctggcgga aatgcgccgc gctcggcacg ggggcgggtg acagtcatac
     2461 gcgtttcccg aagctgagac cagtagggta atcatcgtag tgttgtgtaa aacccgccga
     2521 ttatcaaatg gtttctattt accctcttgt atggcgcgat atcaactttc tggcggaaga
     2581 taattgcatt tctttctgct gaaacaaata attacgttgt catttaactc atctttgagg
     2641 aacttctatg aggcattctg tttcagtaac ctgttgtgcg ctgttggtta gcagcttttc
     2701 cctggcatat gctgcggatg ttcccggcgg aacggtactg gcagagaaac aagaactggt
     2761 gcgtcatatc aaagatgagc ccgcttcgtt agatccagcg aaagccgttg ggctgcctga
     2821 aattcaggtg atccgcgatc tgtttgaagg gctggttaac cagaacgaaa agggtgaaat
     2881 tatccctggc gtcgccagcc agtggaagag caatgataat cgtatctgga cgtttacgtt
     2941 gcgggatgat gcgcaatggg ccgatggaac gccggtgacc gcccaggatt ttgtctatag
     3001 ctggcaacgc ctcgttgatc ccaaaacgct ttcccccttc gcctggtttg ccgctctggc
     3061 tggcatcact aatgcgcaag ccattatcga cagtaaagtc acgccggatc agcttggcgt
     3121 cagtgccgtg gacgcgcaca ctttgcgtgt tcagcttgac aagccgttgc cctggtttgc
     3181 cagtctgacc gccagttttg ccttttatcc ggtccaaaaa gcgaatgtcg aaagcggcaa
     3241 agactggatg aagccgggaa aactgattgg caatggcgcg tatgtgctta aagagcgcgt
     3301 ggtaaatgaa aaactggtgg tcgtgcctaa tacgcattac tgggataacg cgaaaacggt
     3361 actgcaaaaa gtgacatttt tacccattaa ccaggagtcg gctgcgacga aacgctatct
     3421 tgccggtgat attgatatca ccgaatcttt ccctaaaaat atgtaccaga aattattgaa
     3481 ggatattcca gggcaagttt atacgccgcc gcaattaggg acttattatt atgcgtttaa
     3541 tacgcagaaa gggccgacgg cggattcccg cgttcgtctg gcgctaagta tgaccattga
     3601 tcgccgtttg atggcggaaa aagtcttagg taccggtgaa aaaccggcct ggcattttac
     3661 accggatgtc acggcaggat ttaagcccga tccttcaccg tttgaacaaa tgagtcagga
     3721 agaacttaac gcccaggcga aaacattgct gcgtgcagca ggctacggat cgcagaagcc
     3781 gcttaaatta actctgcttt acaatacctc agaaaaccat cagaaaatcg cgattgcggt
     3841 ggcgtcaatg tggaagaaaa atctggggat ggatgtgaaa ttgcaaaacc aggagtggaa
     3901 aacgtatatc gacagccgga ataccagtaa ttttgatgtt attcgcgtct cctgggtggg
     3961 tgattacaac gaaccgtcga ctttcttatc cttattaacg tccacgcata cggggaatat
     4021 ttcacgcttt actaatccga cttatgacaa aatcctgacg caagcgacga tggaaaatac
     4081 cgccgaagcg cgtaacgcgg attacaatgc agcggagaaa attttaacgg aacaagcgcc
     4141 tatagcacct atttatcagt ataccaatgg ccggttaatt aaaccgtggg taaagggata
     4201 ccccattact aacccggaag atgtggccta tagccgtaca atgtatatcg tgaagcactg
     4261 atgcgtactg gtttcttgtt aactcaaggt agccacgccc gccgcctgat gctggcagaa
     4321 ggcatgggga ttaagcgagc gcctgatgcc gccgttctca ttgctgtgtt ttcagccagg
     4381 tggcaatatc ctgtgtcggc agatgatgtt gtgcattcca ggtgtcactc atcggccacc
     4441 acataccgtc accacgcgcg aaggcgacgc gatagcgcag cattgggtca tgcggatgta
     4501 aacggagttg ctcctgtaag tcaggtagcg tcaatacacc tcgggtaaag gtttgctgcg
     4561 tcacgcgttc gaccgttttc gccagttttg cataagaggt cgtttccccc gcaacaaaga
     4621 cgacttcgtt agtgatacgc ggctgatgca gataaatttc agtggtcagg cgaccaatat
     4681 ccgcaggcga cgtgacggtg acctgccttt cccatccgcc gagggcattg atggtttttt
     4741 ggtctaagtt gaccacatca aaggccggtt cgaagagaaa agaggtaaat aaaccggttg
     4801 aaacaatcac ccactctgtg acgttttgct cgcgcaaaag cgtcctgacg tcatactgtt
     4861 cgtcccacac cggctggccg ctgcctttgc cgaccacatc gtaattcacg ccaaactgcc
     4921 aggggaaata gcgcttaacg cccgcctcca gtaccgcgcg ggtgattttt atctgggtac
     4981 ccgcaccggc gacaaacccc atacaattga tgatcgtatc aaaaccgtgg aattgatctt
     5041 ttaacgctgc aaccgaactg tctgcgatgt cgaccgggat aaaccgcgca ccggcatccg
     5101 ccagttgttg atgaatgctg gaacgtcgtt tgctctgttt atccctggat cgccctgaca
     5161 caataacgca aacggaacca ttacgctgtg tgatcgccgg aaccaacgac gccagcactg
     5221 acgcccccag ttgtcccgcg cccagcacca atactttttc acccacctga ttattggatt
     5281 gtttcatttg cgcctctctg tgttgattca cctgtagata gagattacgt cagggatctg
     5341 cgttcgataa gacgccgaag acgggttaga ctgttctgat aaatgggata attggcgggg
     5401 ggaaaatgga caagctggaa gcgatgcagg tctatgtttg cgtagtggat acccatagtt
     5461 ttatcagagc cgccgaagtg cttggcgtgc cgcgctcaac ggtatcgcga gtggttaaag
     5521 aactggaatc ctggcttaag attcaacttt tgcaacgtac aacccgcaaa cttagcgtga
     5581 ccgcagaggg gcggcgttac tacgaagagt gcaaaagagt gctggcagat atcgcggcca
     5641 tggagtcgtc atttcctggc cgggcggcac aacccaaagg gcgttttaaa gtggggatgc
     5701 cgcaatctct cgcccggcat tgcattattc ctacgctccc ggcctttttg tgccagtatc
     5761 cggagctgga gctgatactt tgttccagcg atagcgtgga ggatattatc cttcaagggt
     5821 atgactgcgt gattcgggcc ggcagaatcg atgattccac cacgctggtt gcccgtccac
     5881 ttgccagctt taactgggtg atagcagcat cgcccactta cattgagcgt tacggtagcc
     5941 ctgaaaattt agatgatctg caaaaacacc atgcagtcgg ctacctgaac caccgcaccg
     6001 ggcgtaccac cgactggttt tttacgcgtg agggggagga ttacgcgatg cgggtgcagg
     6061 agacgctggt tgtcgatgat acggacgctt atattcaggc cggaatacag gggctggggt
     6121 taattcgcgt cgccagctat ctggttgcgc cgtatctgca cagcggggcg ctggtgacct
     6181 gcatggacaa ccatttttat gatttgccgc ttgcgctggt ctatccgcaa aacaggtttc
     6241 tgtcgcctgc ggtacgcgct ttttatgact ggtgcaaaac ggcgctgagc cagccggagc
     6301 ctcttcgcta aaaaatatta ttccggatat cgcattgcct gttcagaaaa ctttttcaca
     6361 gacggtcaaa atgacggtac tggtttttga cgcataagta aaaggcatta tcaaacaggt
     6421 gctacacggc gaggatatag caagcactga acgtttggat gcaataaaaa atctgtacaa
     6481 ctgttattaa tgaacttttt gtataaatat aatcggattt aacaatactc attgtacctg
     6541 tattttgctc ttatcatggc gtctttacga cgaaagggtg ctttagcgtg gaatattcaa
     6601 tattaagtaa caaccttaaa atgcctatgg tgggttttgg cgtttttaag gtaaccgaca
     6661 aagaagaatg tcagcagtca gtgttaagcg ctattcgcag cggttatcgt cttatcgata
     6721 ccgctgcggt atacggcaat gaagatgccg ttggtgacgc tgttcgtgaa gccatcgcga
     6781 caggtctgtg tacccgtgag gagttattta ttacttctaa actgtgggtg caagatatgg
     6841 ctaactacga tctggccaaa gcaggtattg aagcgtcgct gaaaaaatcc gggttagatt
     6901 attttgatct ctatttattg catcaggcaa tgggcgatta ttttagcgcg tggcgcgcgc
     6961 tggaagacgc ttatgaagcc ggtaaactaa aagccattgg cgtgtccaac ttctatgcgc
     7021 atgtgttagc caacttctgt gaaaccgtca gaattacgcc aatggtaaac caggtcgaat
     7081 tgcatccata ctttgcacaa cccgccgcgc tggaaaccat gaagcattat aacgttcagc
     7141 ctgaagcgtg ggcaccgtta ggcggcggga gacataaacc gtatgaaaat gtcatgcttc
     7201 aaaggattgc cgatgcccat caaaaaacca tcgcgcaggt tgtcctgcgt tggaacgtgc
     7261 agcgtggcgt cacggttatt cctaaatcca ctcgacagga acgtattgaa gagaactttg
     7321 ccatctggga tttctcacta acggataacg aaatggctca aatcaacgcc cttgatttag
     7381 gctacgttgg cgaagcggtg aagcatttta atcctgaatt tgttcgcggt tgtcttggcg
     7441 ttaaaatcca cgattgatcc cggcgcttgc ggatgttttc tcgcatgaac agcttctaac
     7501 acggttgccg gagcgtagac ggcaaccgtg tgatattcgc ctggccgtca ggcgccgaag
     7561 gcaccatcga tggtgtgcat cgcgccggtg acgaaagaag cttccggacc ggcaagccat
     7621 gccaccattc cagccacttc ttcaggtctt ccgtgtcgtt tgattgccat gaaactgtgc
     7681 atcagctctt tcatggggcc atcttccgga ttgatgtcgg tatcaatggg gcctggctgc
     7741 accacattta tcgtaatccc gcgggggcca aaatcacggg ccaggccgcg cgccagccct
     7801 tgcagggctg atttactggc agcgtacgcg gccattcccg gtatgggcat ccgatcgcca
     7861 ttcacggaac cgataataat aatgcgtcca ccttccggca tgttgcgggc tgcttcgact
     7921 gacgcatggt aaggcgcatg gatattaata cggaacaaac gatctatcgc atcgctatct
     7981 tgttccagcg catcgccgaa gagagccacg cccgcattga cgaccagaat atccagtggt
     8041 ccgtactcac gcacgaggct gatgacggca tcccgatcgg cgctatccgt ctggatggcg
     8101 gtgcttccgg tttccgctgc cagtttttcg gcggcttcac gcgatccggc gtagctgaaa
     8161 acgaccgatg cgccgtcagc gctaaagcgt cgtacaatag ccgcgccgat accacgactt
     8221 ccccctaaaa ccagtacaga tttgttgcga aatagcatca tcaggatgtc ctttatgata
     8281 ttgtagtagt cactacaata tgcgtaatga aatcatgccg tcaaggagtt atgtagtaat
     8341 gactacaaaa catagccgaa cgccgggtcg ccctcgccag ttcgatccgg agcaatccat
     8401 tgaaaccgct caacacttat ttcattcgcg cggatacgac gcggtgagcg tagcggatct
     8461 gacaaaagcg ttcgggatca atcctcccag tttctatgcg gcgtttggca gcaagctggg
     8521 gctgtatact cgcgtattaa agcgttacag gatgaccgac gcgattccgc tcggggcgct
     8581 tctgcgtcac gatcgcccga ccgcgaagtg tcttatcgat gtgctgatgg aagcggcaag
     8641 acgttacgct gccgatcctg atgccaccgg atgtctggtt ctggagggcg ctcattgtaa
     8701 cgataaaccg gcacgagagg ccgcctgcga gttttacatc gctgctgaaa acctgattcg
     8761 cacttatgtc gccatgcggt atccgcaaga ggctgaccgg acgacggact ttatggggac
     8821 gctaatggcg ggactttccg ccaaggcgcg agcggggtat agcctggagc gtcttcagga
     8881 gagcgtgctt ctggctgggg atgtgctgga gcgattactg ccggattaac gcagcgcatc
     8941 aaaaaacctg agccagtcag atacggacaa acagggagca atagccctaa tcatccatct
     9001 tgccgttgcg gtattcggta aagtacatca aaaatagagg tgtcagggaa acaagaaatg
     9061 caaaagtgta gtcttattac ggtacttagc ttatcagtgt tgatgctagc cggatgtaca
     9121 acgacctata ccatgacgac ccggacggga gagattattg aaacgcaggg taagccggag
     9181 gttgacaccg caaccggaat gacgaaatac gctgatgttt atggttatca tcgcgttatt
     9241 aaaaccagtg aaatagtgca gacgacagaa ggcgcatcga agctggactg gtaatgcgct
     9301 aaagcagttg ggaggccgtg tccagtatgg gtaccggact gtttctgggc ctgaattgaa
     9361 tagagcgcct gtatagccga attccgggtc tcggcttgat ttgtgttgtc agttatttgg
     9421 ttgttccctg tatagtgaag ataaacagta ctcatggcta acggtctgtt ttggattgct
     9481 aactatcccg gattctgcgc gttttattta gtcacaacca tggttaagaa tattttgggt
     9541 cagacttaca cgccgggtat taagataatc cgtcgcatag agagcttgat cggcatcatt
     9601 cggttcaaga agaaacggcg tgactttagg tatgagatca gcaaacaggt tatattgatc
     9661 cacagaggca aaatgccggg tagcgctggc ccagggcatt cgcatcagct ctgcgtaaga
     9721 aggggatagt tgaacaggca aatcaaattc tttcagatta gcaagcatct ccttactcat
     9781 ataaaatgtg accctatttt gcgaaaaggt gttaagcact gccttcagtc gtttaacttt
     9841 tgcttcttta ctcatgctat tatcaaaaaa acgtggtgaa agcataatag caatcgatgc
     9901 atttggtgaa ataacattat gtagtggttt cagggctaca acaatctgat cgtttgtgaa
     9961 gatacgctgc gtaccagaag aggtagtata gtttccaccc agccagatca cataatccgt
    10021 tgttttgagg ggaagcgctt tttccggtat attacccctg tcaggtgcca ctgtttcaat
    10081 tgctagtgag tcttgtcccc agacattatt tactttagaa ctcaaaaaat tatattctga
    10141 aatgttcctt agttttagta gagttatctg cgagcgggta aaaaagagat tgaatctcac
    10201 tttgttctgc aattgccgaa gtaatctgag cgtgttctga tcgatcagat gagtataaag
    10261 accaacagtt tttccggaaa gtattgctga ggcattgttc gcaagaagca tctcttttat
    10321 agctccttgc ccaataatca gtacacaacg gtatttttct ggtctgattt tatctatggg
    10381 gatatcggta agattgacca ggtcaggagt gccatgccgc caattatcat gaatgactgc
    10441 ggctccggag gcgtctcctc cggctcccct ggtgataata agaggagggt gggtactggc
    10501 atgtgcgata tacgaaaaac aagctaccat tgctagcgtt gtgtttctga tggttgtata
    10561 catatcgtct gccctgattt cgaaaatatg aataatgtct cctcttataa tgtacatcaa
    10621 aaagagaaca tttaaattaa acggtatctc aacgagataa aaggttagca cagtaaagta
    10681 tagagagaat gtaatcatac caacattgta aatgtgggag catgaaggcc ccgcaagccg
    10741 cccggccagc atactcccat taatagttaa agtatggact ttgcttttac cgta
//
LOCUS       DAJVSD010000150        10784 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.150, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000150 DAJVSD010000000
VERSION     DAJVSD010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10784)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10784)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10784
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.150"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(62..1030)
                     /locus_tag="OQP62_003048"
     CDS             complement(62..1030)
                     /locus_tag="OQP62_003048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HCS1722537.1"
                     /translation="MNTVGTPLLWGGFAVVVVIMLSIDLLLQGRRGAHAMSMKQAAGW
                     SILWVTLSLLFNAAFWWYLAETQGREVADPQALAFLTGYLIEKSLAVDNVFVWLMLFS
                     YFSVPPALQRRVLVYGVLGAIVLRTIMIFAGTWLITQFEWLLYVFGAFLLFTGVKMAL
                     AKEDESGIGEKPMVRWLRGHLRMTDTIENEHFFVRKNGLLYATPLLLVLIMVEFSDVI
                     FAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLSGVAERFSMLKYGLAVILVFI
                     GIKMLIVDFYHIPIAISLGVVFGILTITLVINTWVNHQRDKKLRAQ"
     gene            complement(1298..2296)
                     /locus_tag="OQP62_003049"
     CDS             complement(1298..2296)
                     /locus_tag="OQP62_003049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HCS1722538.1"
                     /translation="MIRFAVIGTNWITRQFVDAAHETGKFRLAAVYSRRLEQAQSFAN
                     DYPVEHLFTSLEAMAQSDAIEAVYIASPNSLHFSQTQRFLQHKKHVMCEKPLASNLAE
                     VDAAIACARDNQRVLFEAFKTACLPNFLLLRESLPKIGRMHKALLNYCQYSSRYQRYL
                     NGENPNTFNPAFSNGSIMDIGYYCLASAIALWGEPRSVQASANLLESGVDAHGVVVMD
                     YGDFSVTLQHSKVSDSVLASEIQGERGSLVIEKLSECQKVCFAPRGALMQDLTQPQHI
                     NTMLYEAGAFAQLIENHAVEHPGLSLSRATAKWLTEIRRQTGVIFPADDLTHPPTA"
     gene            complement(2384..3076)
                     /locus_tag="OQP62_003050"
     CDS             complement(2384..3076)
                     /locus_tag="OQP62_003050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vancomycin high temperature exclusion protein"
                     /protein_id="HCS1722539.1"
                     /translation="MLSQCARFIRRLCFTRRALTVACFLLVAAGVALFYSNWLIVNAS
                     QHLTWNDIQTVPARNVGLVLGAKPGNRYFTRRINTAAALYHAGKVKWLLVSGDNGKKE
                     YDEPSAMQQALIAKGVPEAAIFCDYAGFSTLDSVVRARKVFGESRITIISQAFHNQRA
                     IWLAQQYGIDAIGVNAPDLNKRHGTYTRLREKLARVSAVLDAKILHRQPKYLGAGVTI
                     GADSAHGCPSRQ"
     gene            complement(3228..3725)
                     /locus_tag="OQP62_003051"
     CDS             complement(3228..3725)
                     /locus_tag="OQP62_003051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HCS1722540.1"
                     /translation="MTSLTYLQGYPEHLLAQVRALIAEQRLGAVLEKRYPGAHDYATD
                     KALYHYTQELKSQFLRNAPPINKVMYDSKIHVLKNALGLHTAVSRVQGGKLKAKAEIR
                     VATVFRNAPEPFLRMIVVHELAHLKEKDHNKAFYQLCCHMEPQYHQLEFDTRLWLTHQ
                     ALSAQ"
     gene            3811..4947
                     /gene="rlmG"
                     /locus_tag="OQP62_003052"
     CDS             3811..4947
                     /gene="rlmG"
                     /locus_tag="OQP62_003052"
                     /EC_number="2.1.1.174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (guanine(1835)-N(2))-methyltransferase
                     RlmG"
                     /protein_id="HCS1722541.1"
                     /translation="MSHVDDGFRSLTLKRFPQTDDVNPLLAWEAADEYLLQQLDETEI
                     RGPVLILNDTFGALSCALAEHSPYSIGDSYLSELGTRENLRHNGIAESSVTFLDSTAD
                     YPQAPGVVLIKVPKTLALLEQQLRALRKVVTAQTRIIAGAKARDIHTSTLELFEKVLG
                     PTTTTLAWKKARLINCTFSHPQLANAPQTLSWKLEDTGWTIHNHANVFSRTGLDIGAR
                     FFMQHLPENLDGEIVDLGCGNGVIGLSLLAKNPQANVVFVDESPMAVDSSRLNVETNL
                     PEAFERCEFMINNALSGVEPFRFNAVFCNPPFHQKHALTDNIAWEMFHHARRCLKING
                     ELYIVANRHLDYFHKLKKIFGNCATIATNNKFVILKAVKQGRRR"
     gene            complement(5028..7045)
                     /locus_tag="OQP62_003053"
                     /pseudo
     CDS             complement(5028..7045)
                     /locus_tag="OQP62_003053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462133.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 2,4-dienoyl-CoA reductase"
     gene            complement(7216..8595)
                     /gene="ygjG"
                     /locus_tag="OQP62_003054"
     CDS             complement(7216..8595)
                     /gene="ygjG"
                     /locus_tag="OQP62_003054"
                     /EC_number="2.6.1.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006894971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine aminotransferase"
                     /protein_id="HCS1722542.1"
                     /translation="MNRLPSSASALACSAHALNLIEKRTLNHEEMKALNREVIDYFKE
                     HVNPGFLEYRKSVTAGGDYGAVEWQAGSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPV
                     VVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKL
                     AKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRRPFMPLLPGFRHVPFGNIDAM
                     SMAFSEGKKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTG
                     MGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFG
                     GNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHEARGKGMLMA
                     IEFVDNETGYRFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIELCEQVLKSARNALA
                     AMQVSVEEV"
     gene            9025..10545
                     /locus_tag="OQP62_003055"
     CDS             9025..10545
                     /locus_tag="OQP62_003055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HCS1722543.1"
                     /translation="MSSHPYVSQLNTPLDDDTTLMSTTDLESYITHANDTFVQVSGYQ
                     LNELLARPHNLVRHPDMPKAAFADMWYTLKQGEPWSGIVKNRRKNGDHYWVRANAVPM
                     IREGRVTGYMSIRTRATDDEIAAVEPLYQALNEGRCSKRIHKGLVVRQGLLGKLPAMP
                     VRWRVRSIMGLMAVMLALALFGTDASWQALLLGALAMLAGTALFEWQIVRPIENVATQ
                     ALKVATGERNSVQHLNRSDELGLTLRAVGQLGLMCRWLINDVSSQVSSVRNGSERLAK
                     GNNDLNEHTRQTVENVQETVTTMNQMAESVKLNSETASAADKLSMAASSAATQGGEAM
                     DTVIKTMDDIAHSTQRIGTITTLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGE
                     VRHLASRSANAANDIRKLIDASATKVQSGSEQVHAAGRTMDDIVAQVQNVTLLIARIS
                     QSTQEQTDGLSSLTRAVDELNRITQKNAALVEESAQVSAMVKHRASRLEDAVTVLH"
BASE COUNT         2585 a         2853 c         2929 g         2417 t
ORIGIN      
        1 acgcccggca ggtgtacgct gccgggcgtt tttgatgggg caggtttacc ccgataaaag
       61 attattgcgc tcgtagtttc ttatcgcgct gatggttaac ccaggtgtta atcaccagcg
      121 taatggtcag aatgccaaac actacgccca gcgaaatcgc gataggaata tggtagaagt
      181 cgacgatcag catcttaatg ccgataaaga ccagaatgac cgccagacca tatttcagca
      241 tcgagaagcg ttccgccacg ccggacagca ggaagtacat cgcgcgcagt cctaagatgg
      301 caaacaggtt agaggtcagt acgatgaacg ggtcggtggt gaccgcaaag atcgccggaa
      361 tactgtcaac ggcgaagatc acatcgctga actcaaccat aatcagcacc agcagcagcg
      421 gcgtggcata tagcaggccg tttttacgta cgaaaaagtg ctcgttctcg atcgtatcag
      481 tcatgcgcag atgcccgcgc agccaacgca ccatcggttt ttcgccaatg ccggattcgt
      541 cttccttcgc cagcgccatt tttacgccgg taaacagcaa gaaggcgccg aacacataca
      601 gcagccattc gaactgagtg ataagccagg taccggcgaa aatcatgata gtacgcaaca
      661 cgatcgcgcc aagaacccca tacaccagca cccggcgttg cagagccgga gggacggaga
      721 aatagctaaa cagcatcagc cagacaaaga cgttatctac ggccagcgac ttttcaatca
      781 gatagccggt aaggaacgct aatgcctgcg ggtcagcaac ttcgcgccct tgcgtttcag
      841 ccagatacca ccagaaagcg gcgttaaaca gtagcgagag cgttacccac aggattgacc
      901 atcctgccgc ttgtttcatc gacatcgcat gtgcgccacg gcgtccctgc aacaacaagt
      961 cgatggatag cattatcacc acaacaaccg cgaatccacc ccataataat ggcgtaccaa
     1021 cagtattcat tatttctccc catgcaaaaa aacggctaat gccgaatggc attagccgct
     1081 gcttttatgc atagaccttg ccattcggca aggtctcact tacaacaata aaggaatacg
     1141 ctgacgcatt cctttatggc tgcccggtga ccggatgtgg ttttgcacac atcgtaatga
     1201 cgatcgaccg gcaatgaagt tactcccctt tgcgcgtaac aaagtatgac aggccacgcg
     1261 tagagtcaat gacctgtaac atacgattta cataatttta cgcagtaggg ggatgagtca
     1321 gatcgtccgc cgggaagatg accccggttt gacggcgtat ttctgtcagc cattttgccg
     1381 tggcgcgact tagcgacaac cccggatgtt ccacggcgtg gttttcaata agctgggcaa
     1441 acgccccggc ttcatacagc atggtattaa tatgctgagg ctgggtcaga tcctgcatca
     1501 gcgcgccgcg cggcgcaaaa cacactttct ggcattccga cagcttttca atgaccagcg
     1561 atcccctctc gccctgaatt tcactggcca gtaccgagtc gctgactttg gaatgctgta
     1621 gcgtgacgct aaaatcgccg taatccataa ccacgacgcc gtgtgcatct actccgcttt
     1681 ccaataaatt cgccgacgcc tgaacgctgc gcggctcgcc ccatagcgcg atcgccgacg
     1741 ccagacagta atacccgata tccataatcg aaccattgga gaaggccgga ttaaacgtat
     1801 tcggattttc accgttcaga tagcgctgat aacgtgaaga gtactggcag taatttagta
     1861 atgctttatg cattctgccg attttcggca acgattcccg cagcagcagg aaattgggca
     1921 ggcaggcggt tttaaaggct tcaaacagta cccgctgatt atcgcgcgcg caggcgatag
     1981 cggcatcaac ctccgccagg ttagaagcca gcggcttttc gcacatgaca tgttttttat
     2041 gctgcaaaaa gcgctgcgtc tgggagaaat gcagggaatt cgggctggcg atataaaccg
     2101 cctcaatcgc gtcgctttgc gccatcgctt ccagcgaggt aaacagatgc tcgacgggat
     2161 aatcatttgc gaaagactgc gcctgttcaa gtctacggga gtaaacggcg gcgagcctga
     2221 atttgccggt ttcatgggcg gcgtcgacaa actggcgcgt gatccagtta gtcccaatta
     2281 cagcgaaacg tatcataaac gtcagcggac tccagaaagg gattttcgtc aatgtagcac
     2341 gcctttccgc ccttgccagt gcgctgcgac gcactctggc attttactgg cgagaagggc
     2401 acccgtgtgc gctatcagcc ccaatagtga cgccagcgcc cagatattta ggctgacgat
     2461 gcaaaatttt ggcatccagc actgcgctaa cccgcgccag cttttcccga agtcgtgtgt
     2521 aggttccgtg ccttttattc agatccggcg cgttaacgcc gatagcgtca atgccatatt
     2581 gttgcgccag ccagatcgcc cgttgattat gaaatgcttg cgagataatc gtaatgcggc
     2641 tttcgccaaa cactttccgg gcgcgaacca cggagtccag cgtggagaat ccggcataat
     2701 cacaaaaaat ggccgcttcc ggcacacctt tcgctatcag cgcctgctgc atcgccgaag
     2761 gttcatcgta ctcttttttg ccgttatcgc cgctgactaa cagccacttc actttaccgg
     2821 cgtggtacaa cgcggcggca gtattaatcc gccgggtaaa ataccgattg ccgggtttgg
     2881 cgcctaatac cagcccgaca ttgcgggcgg gaacggtctg aatgtcattc catgtcagat
     2941 gctgtgaggc gttgacgata agccagttgg aatagaaaag cgcgacgcct gctgcgacaa
     3001 gcagaaaaca cgccactgtt aacgcccggc gtgtaaaaca gaggcggcgg ataaaacggg
     3061 cacattgtga gagcatggtt gttgcgcggt tccgttggcg gtggataaaa aataccctct
     3121 acagatcgtc atccttgagg tggcggcagg caatgagcga aatgtgaacg cgtcgatttt
     3181 atgcccacgc cgttaaaaag atacggggga aggggcattt tcagaattta ttgtgccgac
     3241 agcgcctgat gcgtcagcca caggcgcgta tcaaattcca gttgatggta ctgcggctcc
     3301 atatggcagc agagctgata aaacgctttg ttatgatctt tctctttcag gtgcgccagt
     3361 tcgtgaacca caatcattcg taagaatggc tccggggcgt tgcgaaacac ggtggcgacg
     3421 cggatctccg ccttggcctt gagcttgccg ccctgaacgc gcgagacagc ggtatgcagt
     3481 cccagcgcat ttttcagcac atggatcttg ctgtcataca tcactttatt gatgggcggc
     3541 gcattgcgca gaaactgact tttcagttcc tgagtatagt gatatagcgc tttgtcagta
     3601 gcgtaatcat gcgcgccggg ataacgtttt tccagcaccg cccccaggcg ctgctcggcg
     3661 attaaggcgc gcacctgggc aaggagatgt tccggatacc cctgaaggta agttagtgag
     3721 gtcatcaaag ctccatgttg ccgataaaaa gtgtatactc acgcaccctt ttcagggata
     3781 acgccgcaat tttaccattc aggaggccta atgagccacg tagacgacgg tttccgttca
     3841 ctgacgctga aacgttttcc gcaaacggat gatgttaacc cgcttctggc gtgggaggcg
     3901 gccgatgagt atctgctgca acagttggat gagacggaaa ttcgcggccc ggtgctgatc
     3961 ctgaatgata cgtttggcgc gctaagctgt gcgctggcgg agcattcgcc atacagtatt
     4021 ggcgattcat atttaagcga actgggtacg cgagagaatt tacgccataa cggcatcgcg
     4081 gagtccagcg taacgtttct cgacagtacc gctgactacc cgcaggcacc gggcgtggta
     4141 ttgattaaag taccgaaaac actggcgttg ctggaacagc agttacgcgc tttgcgtaag
     4201 gtcgttacgg cgcaaacgcg tattatcgcc ggcgcgaaag cgcgtgatat tcatacctct
     4261 acgctggaac tgtttgaaaa agtgctgggc ccaaccacga cgacgctggc gtggaagaaa
     4321 gcgcgcctga ttaactgtac cttcagtcat ccgcaactgg ccaacgcgcc gcaaacgcta
     4381 agctggaaac tggaagatac aggctggacg attcacaacc acgcgaatgt gttttctcgt
     4441 accggattgg atatcggcgc gcgcttcttt atgcagcatt tgccggaaaa cctcgacggg
     4501 gagattgtcg atctcggctg cggcaatggg gtgattggcc tgagcttact ggcgaaaaat
     4561 ccgcaggcga acgtggtatt tgtcgatgaa tcgccgatgg cggtagattc cagccgtttg
     4621 aatgtagaaa cgaacctgcc ggaagcgttc gaacgctgcg aatttatgat caacaacgcg
     4681 ctctccggcg tggagccgtt ccgttttaac gcggtgttct gcaatccgcc gttccaccag
     4741 aaacatgcgc tgacggataa tatcgcctgg gagatgttcc atcatgcccg ccgctgcctg
     4801 aaaatcaacg gcgaactgta tattgtggcg aaccgccatc tggactattt ccacaagctg
     4861 aagaagattt tcggtaattg cgcgacgata gcaaccaaca ataaatttgt tattctgaaa
     4921 gcggtgaagc agggacgccg tcgataaggc actcaagcgt cataccggcc tataaaaccg
     4981 gtatgacggc ataggcccga taagcgcagc gccatcaggc aaagtcgtta aatctccagc
     5041 gccagtcggg tgccctgggc aatcgcccgt cgggcatcca gttccatcgc gacatcgcat
     5101 ccgccgataa gatgtaccgt tttacctgcg gcgcgtaacg ggtccgccag ttcacggcgg
     5161 ggttcctgtc cggcgcagat caccacatga tccacttcca gcaactgcgg ttcgccgccg
     5221 atcaagagat gtaatccgtc gtcgtcgatc ttctagtaac tgaccgccgg gatcatcttc
     5281 acgccgcgcg ccagtaacgt cgcgcgatgg atccagccgg tggttttacc taacccttcg
     5341 cccggcttgc tggctttgcg ttgcagcatg acgatttgcc gtggactacg tgccaggcgc
     5401 gggccttccg ggcgcagacc gcctgcctgt tgcaggctgg tatcaattcc ccattccgta
     5461 caaaattcag caatattttg gctggtggat tcgccgtgct ggctcagata catggccgtg
     5521 tcaaaaccga tcccgccgca gccgatgatc gccactcgct taccaaccgg cgctttatcg
     5581 cgcaatacct ccaggtaggt caatactttt ggatgatcga taccgtctat cggcgggcgg
     5641 cgcggtacta ttccacaggc gaggatcgct tcgtcaaacg gctgaagatc ctctgcgttc
     5701 acccgttggt tcagtttcag cgtaacgcca gtaacatcga tcattcgacg gtagtagcgc
     5761 agcgtttcgt aaaactcttc tttacccggg atctgcctgg cgatagtaaa ctgaccgcca
     5821 atttcactct gggcgtcaaa cagcgtgaca tgatggccgc gcgacgcggc gttaatcgcg
     5881 aaagccagcc ccgccgggcc tgcgccgaca acggccagat tctttttgcg tatggccggc
     5941 gttatcggca tgtgggtttc gtgacaggcg cgtgggtcac cagacaggag gtcactttgc
     6001 cgatgaagat ccgatccaga caggcctgat tacagccgat acaggtattg atctcatctg
     6061 cgcgtccgga ttgcgcttta gtcaggaatt cagcatcggc aaggaaggga cgcgccatcg
     6121 acaccatatc ggcatcgccg cgcgtcagga tcgtctcggc gacctgcgga tcgttaatgc
     6181 gattggtcgc gatcagcgga accgacacat gacctttgag tttccgtgtc acccagctaa
     6241 aggcgccacg cggtactggc gtggcgatgg tcgggattcg cgcctcatgc cagccaatgc
     6301 cggtattaat taggcttgcg cctgcggctt caatggcttg cgccagttgt accgtttcgt
     6361 cgaacgtgcc gccattttcc accagatcga gcatcgacag gcgatagata ataataaagt
     6421 cgttccctac ccgctggcgt accgcgcgta ctacctcaac cgcgaagcgc atacgactgg
     6481 tatagtcgcc gccccattcg tcatcgcgat ggttagttcg ccgcgtgaga aattcattaa
     6541 tcagatagcc ctctgatccc atcacctcta cgccgtcgta gcctgcttcc cgcgccagct
     6601 gcgcgcaatg tgcgaagtcg tcgattaact gcaagatttc atcatgcgtc agttcatgtg
     6661 gcataaagcg gttgattggc gcctgaattg ccgacggcgc gaccaggtgc ggctgatagc
     6721 tgtaacgtcc ggtgtgcaga atttgcagcg cgattttacc gccttgcgca tgtacggcat
     6781 cggtcaccac gcggtgaggc tttaactggc tggcatcgtt cagcatcgcg ccgccggtca
     6841 tcacgacccc ggagggaacg ggcgcaatac cgccggtgac gattaacgct acgccgtgtc
     6901 gcgcgcgctc ggcataaaat gccgccaggc gctcagcgcc atcaggatgt tcttccagac
     6961 ccgtgtgcat cgatcccatc agcacacggt ttctgagagt agtaaagccc agatcgagcg
     7021 gggcgaacag cgacgggtag ctcataagcg tatccagtat gtaaaattat tgttatgtgg
     7081 tcggatgagt tactactgta gccgtcgcga ggtaaaaggg aaaaggggaa tgtggtgatt
     7141 gtgatgggat tcaaaaaaga ggccgcgacc cggggaaaac aggccggata agcacagcgc
     7201 catccggcat cgtttttaaa cctcttcaac gctcacctgc attgccgcca gcgcattacg
     7261 cgctgatttc aatacctgtt cgcacagttc aatggttagc gtgagcggtg gctcgatacg
     7321 aattgttttc gcattattca gcgtaccagc gaccagcacg cgttgacgga acatctcact
     7381 ggcaaaacgg tagcccgttt cgttatcgac aaattcaatg gccatcaaca tacctttgcc
     7441 gcgcgcctcg tgtaccagat tgggatattc acgcgcaagt tgtcgaaaac catccaggag
     7501 cgtatcgcct ttttgttccg cctgggccgg gaggttttgt tccagcagga cgttaatggt
     7561 cgccagcgcg gcagcacaag ccagcgggtt accgccaaaa gtggtggtat gcaggaaggg
     7621 attgtcgaac agaaccgaaa acacctcctc agtcgcgatg gtggcgccaa ttggcatcac
     7681 gccgccgccc agggctttcg ccagacacag aatatcaggc tgcacatttt cgtgctcgca
     7741 ggcaaacatc ttgccggtac gccccatgcc ggtttgtact tcatccagaa tcatcagcgc
     7801 gccgaattca tcacagagct tacgtacctc tgtcaggtat ccctgcggcg gcaggatcac
     7861 gccgccttca ccctgaatag gctccagaat cacggctgct atctcgtcgc ccgttttttt
     7921 gccttcgcta aatgccatgc tcatcgcgtc gatattgcca aacggcacat ggcggaagcc
     7981 cggcagtaaa ggcataaagg gtctgcggaa ggtggatttg gccgtggcgg agagcgcgcc
     8041 caatgatttg ccgtgaaatg cgccgctggt ggcgataaag gtaaacttgc cgcgcggcga
     8101 ctgatacgct tttgccagtt ttagcgccgc ttcgacggat tcggtgccgc tgttacagaa
     8161 aaagctgtac ttgagtttcc ccggtgttag cgccgccagc gtttttgcca gcatcgcccg
     8221 caaggggtca agtaactcct ggctgtggag aggttgtttt gcgagttgat tctggacggc
     8281 ggataccaca acaggattac ggtgccccac gttaaagatg ccaaaccccc caagacaatc
     8341 gataaactcc tgcccctggg tgtcgacaag cgtattcaaa ctgcccgctt gccactctac
     8401 ggctccgtaa tccccgccgg cggtaacaga tttccggtat tccagaaatc ctggatttac
     8461 atgctcttta aagtagtcaa tgacctctcg gtttagtgct ttcatttcct catggtttag
     8521 cgttcgcttc tcgatgagat tcagtgcgtg cgcgctacag gccaaagccg atgcgctgga
     8581 aggtaacctg ttcaaaatga gctccagagg gccgtgtatc acatgatact gaattaagta
     8641 ttgcagggat tagcgggggt ctaagcccat agtgaaaatc gggataaaca ccaggaataa
     8701 tcacatttac acaacattta atgttatacg ttaacaattg gatgcatttt gagcagatct
     8761 tgttttacgg tttacggtgt gttgcgttag cggcggcgtg agaaaaaggt gagccagggc
     8821 agattttaaa gaaaaaggtt gtccacgcta aacaatttca taatgaaaat aaggcgcagg
     8881 ataaggtgaa aatcgtacaa atattaagga ttaatcgcaa attgcgatcc agagcaattt
     8941 taacaactaa agataaatag attagcgccg aaataacatc tgagcgaaaa attaacatcc
     9001 agataacctg cacaggacgc tatcatgtct tctcatccct acgtcagcca gctaaatacc
     9061 ccgctggatg atgataccac tctgatgtct acgaccgacc tggaaagcta tatcactcac
     9121 gccaatgaca cttttgtcca ggtgagcggc tatcagttaa acgagttact ggcgcggcca
     9181 cataatctgg tgcgtcatcc ggatatgccg aaagctgcct tcgcagatat gtggtacacc
     9241 ctaaaacagg gcgaaccgtg gagcggcatt gtgaaaaacc ggcgtaaaaa cggcgatcat
     9301 tattgggtgc gggccaacgc ggtaccgatg atacgtgaag ggcgtgtgac gggatatatg
     9361 tcgatccgta cccgcgccac ggatgatgag attgccgccg tcgagccttt atatcaggcg
     9421 ctaaatgaag ggcggtgtag taaacgtatt cataaaggcc tggtggttcg tcagggcttg
     9481 ctgggcaaac tgcccgcgat gcctgttcgc tggcgagtgc gtagcattat ggggctaatg
     9541 gccgtaatgc tggcgttggc gctgttcggt acggatgcct catggcaggc gttgttgttg
     9601 ggcgcgttgg cgatgctggc aggtacggcg ctatttgaat ggcaaattgt gcgtcccatt
     9661 gaaaatgtgg cgacgcaggc gctgaaagtg gcgaccggcg aacgcaacag cgtacaacac
     9721 cttaatcgta gcgatgagtt ggggctgacg ctgagggccg tggggcagct tggcttgatg
     9781 tgccgttggc tgatcaatga cgtatcaagt caggtgtcca gcgtcagaaa cggcagtgaa
     9841 aggctggcga agggtaacaa tgatctgaac gaacacaccc gtcagaccgt ggagaatgtt
     9901 caggaaacgg taacgaccat gaaccagatg gcggagtccg tgaagctcaa ttccgagacg
     9961 gcttccgctg cggataagct ttccatggcg gccagtagcg cggcgactca gggaggtgag
    10021 gcgatggata cggtgattaa aacgatggat gatatcgctc acagtacgca acgtatcggg
    10081 acgatcacca cgctaattaa cgatatcgct tttcagacga atatcctggc gctgaatgcg
    10141 gcggtagaag cggcgagagc gggcgagcag gggaaagggt ttgccgtggt tgctggcgag
    10201 gtacgccatc ttgccagccg cagcgctaac gcggcgaacg atattcgtaa attaattgat
    10261 gccagcgcaa caaaggtgca gtcaggctcc gagcaggttc acgccgcagg ccgtaccatg
    10321 gatgacattg tagcccaggt gcaaaatgtc accctgctta tcgcacggat cagccagtcg
    10381 acgcaggaac agacagatgg gctttccagc ctgactcgcg ccgtggacga gttgaaccgc
    10441 ataacccaga agaatgcggc gctggtggaa gagagcgcac aagtctccgc gatggtaaaa
    10501 caccgtgcca gccggctgga ggatgcggtc acggtactgc attaagttta tttgtaggta
    10561 gcaacggtaa tgacatccgc ccggtagcaa caagcttacc gggcggatgt gctctgatag
    10621 aaggcggtgc ctgccatcat agagagtacc agtggcctgt gatgttaaaa ataatgtgat
    10681 atttattcct tctcccttgt ctacctatta ataggtataa actcagttga taaataagaa
    10741 atggttaacc ttttagcgta tttctttcat tattagtgcc aatt
//
LOCUS       DAJVSD010000151        10695 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.151, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000151 DAJVSD010000000
VERSION     DAJVSD010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10695)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10695)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10695
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.151"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..181
                     /locus_tag="OQP62_003056"
     CDS             <1..181
                     /locus_tag="OQP62_003056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004111984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722544.1"
                     /translation="YWKQLPTKDEYIKKHNMSKISCYSCGHEKFSDVGLIQVWDNHRR
                     ILCAKCKTTLFREED"
     gene            complement(393..2669)
                     /gene="clpA"
                     /locus_tag="OQP62_003057"
     CDS             complement(393..2669)
                     /gene="clpA"
                     /locus_tag="OQP62_003057"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpA"
                     /protein_id="HCS1722545.1"
                     /translation="MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREAL
                     EACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSE
                     VTGANVLVAIFSEQESQAAYLLRKHEVSRLDIVNFISHGTRKDEPSQSSDLGNQPAGD
                     EQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGV
                     GKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ
                     DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKD
                     RALARRFQKIDITEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR
                     HLPDKAIDVIDEVGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLK
                     NLGDRLKMLVFGQDNAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL
                     SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI
                     EKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDN
                     STDAMGEIKKVFTPEFRNRLDNIIWFDHLSGEVIHQVVDKFIVELQAQLDQKGVSLEV
                     SQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKN
                     ALTYDFQSAQKHKPEAAH"
     gene            complement(2700..3020)
                     /gene="clpS"
                     /locus_tag="OQP62_003058"
     CDS             complement(2700..3020)
                     /gene="clpS"
                     /locus_tag="OQP62_003058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HCS1722546.1"
                     /translation="MGKTNDWLDFDQLVEDSVRDALKPPSMYKVILVNDDYTPMEFVI
                     DVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCT
                     LEKA"
     gene            3344..3565
                     /gene="cspD"
                     /locus_tag="OQP62_003059"
     CDS             3344..3565
                     /gene="cspD"
                     /locus_tag="OQP62_003059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock-like protein CspD"
                     /protein_id="HCS1722547.1"
                     /translation="METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKA
                     GQSVRFDVHQGPKGNHASVIVPIEAEAVA"
     gene            complement(3695..5641)
                     /gene="macB"
                     /locus_tag="OQP62_003060"
     CDS             complement(3695..5641)
                     /gene="macB"
                     /locus_tag="OQP62_003060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrolide ABC transporter ATP-binding
                     protein/permease MacB"
                     /protein_id="HCS1722548.1"
                     /translation="MTALLELCNVSRSYPSGEEQVAVLKDISLQIHAGEMVAIVGVSG
                     SGKSTLMNILGCLDKPTSGTYRVAGRDVSTLDPDALAQLRREHFGFIFQRYHLLSHLT
                     AAQNVEIPAVYAGIERKKRQARARELLLRLGLSDRVDYPPSQLSGGQQQRVSIARALM
                     NGGQVILADEPTGALDSHSGEEVMAILRQLRDRGHTVIIVTHDPLIAAQAERIIEIHD
                     GKIVHNPPAQEKKREQGVDAAVVNTAPGWRQFASSFREALSMAWLAMAANKMRTLLTM
                     LGIIIGIASVVSIVVVGDAAKQMVLADIRAMGTNTIDIHPGKDFGDDNPQYRQALKYD
                     DLVAIQKQPWVNSATPSVSKSLRLRYGNIDIAVNANGVSGDYFNVYGMSFREGNTFNA
                     VQQQDRAQVVVLDANTRRQLFPNKANVVGEVVLVGNMPVIVIGVAEEKPSMYGNSNLL
                     QVWLPYSTMSDRIMGQSWLNSITVRVKDGVDSDQAEQQLTRLLTLRHGKKDFFTWNMD
                     SVLKTAEKTTYTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARAS
                     DVLQQFLIEAVLVCLVGGALGISLSMFIAFMLQLFLPGWEIGFSLTALASAFLCSTFT
                     GILFGWLPARNAARLDPVDALARE"
     gene            complement(5638..6756)
                     /gene="macA"
                     /locus_tag="OQP62_003061"
     CDS             complement(5638..6756)
                     /gene="macA"
                     /locus_tag="OQP62_003061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrolide transporter subunit MacA"
                     /protein_id="HCS1722549.1"
                     /translation="MRAKGKKFKKRYLVIILILLVGGMVSWRMINAPLPTYQTLIVRP
                     GDLEQSVLATGKLDALRKVDVGAQVSGQLKTLLVSIGDNVKKDQLLGVIDPDQAENQI
                     KEVEATLMELNAERQQAAAELKLARVTLARQQQLAKTQAVSQQDLDTAATELAVKQAR
                     IGTIDAQIKRNRASLDTAKTNLEYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTL
                     ADMSTMLVKAQVSEADVIHLRAGQKAWFTIAGDPQTRYEGVLKDILPTPEKINDAIFY
                     YARFEVPNPKRILRLDMTAQVYIQLMDVKNVLIIPLAALGEPVGGNRYKVALLRNGEK
                     REREVVIGERNDTDVEVVKGLEAGDEVIIGESRPGATP"
     gene            6902..7852
                     /locus_tag="OQP62_003062"
     CDS             6902..7852
                     /locus_tag="OQP62_003062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001519667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK/YbjX family protein"
                     /protein_id="HCS1722550.1"
                     /translation="MTQLTDNTWYTSDYISPLQLFIRLTRGQLQPGKFWRKASFRRKF
                     LIRSLVMPRATSQLLTNLTQWPKLNTLLARQPRLPIRLHRPYMAVNIKRDFALDALCF
                     HYQQMRQLLSREQQVSYLSQYGLNLAKFEAKTGELFQLDLVSLVSLDKEGESTIVVRD
                     AQLRILAEITFTLCRFNQQRTLFIGGLQGAANDVPHEIIQQATKACHGLFPKRIVMEA
                     LCQFAQVFQAEKIIAVSNDAHVYRSWRYMDKKTQMHADYDAFWESLGGERIKGNYYTL
                     PLAIARKSEAEIASKKRAEYRRRYALLDSVVEQVPATFKR"
     gene            complement(7849..9507)
                     /locus_tag="OQP62_003063"
     CDS             complement(7849..9507)
                     /locus_tag="OQP62_003063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459916.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HCS1722551.1"
                     /translation="MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTL
                     LLSPELDLYHFVREDFWFPPGDIKGREHHLHIILTFRETQPGRHRVRRYRALEACWSP
                     CEDDFHRIFYRLEGECGADGSVMTLRSFLNSDGQPLPVENINDQVRHLVRLMPVLRLR
                     DARFMRRIRNGTVPNVPDVEVTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEH
                     YFSEQGAGQARHRLMRRRSQNEQRSWRYLDIINRMIDKPGSRSHRVILLGLFSTLLQA
                     KGTLRLHKDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRIATTNSGELLSLTPVE
                     HVVRLVRESSRVAAWRLGTGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWV
                     INELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATV
                     RSLLNNDREEEREHLTALPTLDMEHFMYRQGFADVFHRVAQLPLNVPMNTRKIITKAI
                     HRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMFSRVVWLARGRAD"
     gene            9708..10607
                     /locus_tag="OQP62_003064"
     CDS             9708..10607
                     /locus_tag="OQP62_003064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine exporter LysO family protein"
                     /protein_id="HCS1722552.1"
                     /translation="MFSGLLIILVPLIVGYLIPLRHKAALQLINRLLSWIVYLILFFM
                     GISLAFLDNLASNLVAIFHYSAVSITIILLCNIAALLWLERILPWRHHHQQEKLPSRI
                     AMALESLQLCGVVVLGFIIGLSGLSVLQHATEASEYTLIFLLFLVGIQLRNSGMTLKQ
                     IVLNRRGMMVAVVVVASSLLGGVINAFILDLPLKTAMAMASGFGWYSLSGILLTESFG
                     PVIGSAAFFNDLARELLAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGVEIV
                     PAAIVHGFILSLLVPLLMAFFSA"
BASE COUNT         2492 a         3037 c         2531 g         2635 t
ORIGIN      
        1 ctactggaag caacttccca ccaaagatga atatattaaa aaacacaata tgagcaaaat
       61 atcctgctac agttgtggtc acgagaaatt cagcgatgtt ggtttgatac aggtatggga
      121 taatcacaga agaattcttt gtgctaagtg taagactact cttttcagag aagaggatta
      181 gtttttttgg cattggtaac agcggcttca gcatcccttt tcacgcagcg ggtcgggctt
      241 tttttcgcat ttgacccgtc gattaccgga tgatggcgca atttacaagc gccttatccg
      301 cctaccgcga gcacaacacc atcaggctaa ctattagccg gcataaaaaa accgggcgct
      361 aaggcccggt ttgtacggca gtgaaacgaa gattagtgcg cggcttccgg cttgtgcttt
      421 tgcgcactct ggaagtcata cgtcaacgca tttttctctt tatccagcgc gacggtgacc
      481 tgtccgccgt caaccagcga tccaaacagc aactcattgg ccagtggttt tttcaggtta
      541 tcctggatca cacgtgccat tggtcgtgcg cccatcgccc ggtcatagcc cttttccgcc
      601 agccagtcgc gcgcttcctg actgacttcc agggagacgc ctttctgatc caactgagcc
      661 tgcaactcga cgataaactt atcgacaacc tgatgaatca cctcgccaga cagatgatcg
      721 aaccaaataa tgttgtcgag acggttacgg aactcaggcg taaacacttt cttgatctca
      781 cccatcgcat cggtactgtt gtcctgatga ataagaccaa tagatttacg ttcggtttct
      841 cgcacgccgg cgttggtggt catcaccagc accacgttgc ggaaatccgc cttgcggccg
      901 ttgttatcgg tcagcgtacc gttatccatc acctgcagca gcaggttaaa gacatccggg
      961 tgcgcttttt cgatctcatc cagcaacagc accgcatgag gatgcttaat caccgcatcc
     1021 gtcagcagcc cgccctggtc gaaaccgacg tatcccggag gcgcgccgat cagacggctc
     1081 accgtatgac gctccatata ttcggacata tcaaaacgca acagctcaat acccagcgct
     1141 tttgaaagct gtaccgtaac ttcagttttc cctacgccag ttgggccggc gaacaagaat
     1201 gagccgacag gtttatgctc atggcccagg cccgcacgac tcatcttaat agcttcggtc
     1261 agcgcctcaa tcgcgttatc ctggccgaag accagcattt tcagacgatc gcccaggttc
     1321 ttcagcgtat cgcgatcgct ctgcgagacg ctcttttcag gaattcgcgc aattcgcgcc
     1381 actacggact caatatccgc cacgttgacc gttttcttac gtttgctcac cggcatcaga
     1441 cgcgcccgag cgcccacttc gtcaatcacg tcaatggctt tatccggcag atggcggtca
     1501 ttgatatatt ttaccgccag ctcgaccgcc gcacgcaccg ctttcgcggt ataacgcacg
     1561 tcgtggtgcg cttcgtactt aggtttcaag ccgttgataa tttgcaccgt ctcttccacc
     1621 gaaggctcgg taatatcaat tttctggaaa cggcgcgcta atgcgcggtc tttctcaaaa
     1681 atattgctga attcctgata ggtcgttgag ccgatcaccc ggatcttgcc gctggaaagc
     1741 agcggtttaa tcagatttgc cgcatccacc tgtccacccg acgccgcgcc agcgccgata
     1801 atggtatgga tttcatcgat aaacaggatg ctgttggtat cctgctcaag ctgtttcagc
     1861 aacgccttaa accgtttttc aaaatcgccg cggtatttgg tgcccgccag cagcgaaccg
     1921 atatccagag agtaaatagt acaatcggcc atcacttccg gcacatcgcc ctgcacgata
     1981 cgccaggcca gcccttcggc aatcgccgtt ttgccgacgc cggattcccc taccagcaac
     2041 gggttatttt tacggcgacg acacaagacc tggatcgcgc gttcaagttc tttttcacga
     2101 ccaatcagcg gatcgatgcc gcccacgcga gcaagttggt taagattcgt cgtgaagttt
     2161 tccatacgtt cctccccgcc agcttgttcg tcgccagctg gctgattgcc gagatcggaa
     2221 gattggctcg gttcgtcttt tcgcgtcccg tgagaaataa agttcacgat atccagacgg
     2281 ctcacttcat gcttacgcag cagataagcc gcctgtgatt cctgctcgct aaagatagcc
     2341 accagcacat tcgcgccagt cacttcacta cgcccggaag actgaacgtg gaagacggca
     2401 cgttgcagga cacgctggaa acttaacgtc ggctgcgtat cacgctcttc ttcactggca
     2461 ggcagtacgg gtgtggtttg ttcaatgaag gcttcgagtt cctgacggag cgccaccaga
     2521 tccacggagc atgcttccag cgcttcgcga gccgatgggt tgctgagcag cgccagcaac
     2581 agatgctcga cggtcataaa ctcatgacgg tgctcgcgcg ctctggcgaa agccatgttt
     2641 aaactgagtt ccagttcttg attgagcata ggcacctccc ccaattttta tacctgcatt
     2701 caggcttttt ccagcgtaca cagcaacgga tgctcgttct cccttgcata cttgttcacc
     2761 atcgccactt tggtttccgc cacctcggcg gtaaacacgc cgcagatagc tttgccttga
     2821 tagtgaactg caagcatcaa ttgcgttgca cgttctacat cataagaaaa gaatttttgt
     2881 aacacgtcaa taacaaactc catcggagtg tagtcatcat tgactaatat cactttatac
     2941 atagatggcg gttttagcgc gtcgcgcacg ctatcttcca ccaactggtc aaaatccagc
     3001 caatcgttcg tcttacccat tgtcagtcgt cattatcggt tacggttgtc ggcaggaaaa
     3061 tctgccgctg accagagtct atgcacacaa tcaatctacc tcaattgata gataactaac
     3121 atctatcagt accatccacg acatctgtca cattcccggc aatagcgtta actgcttcaa
     3181 atttttgatt catttttacc cgatcccccc tgcctgatgc ttgacgcctc gcctgatttc
     3241 tctaaattgt aatgtcgaga gttggtgagg ttttgaacag cccccactcc gtcaccggtt
     3301 cattccatct tacttatata agatttacga aggatgtcga agcatggaaa cgggtactgt
     3361 aaagtggttc aacaatgcca aagggtttgg tttcatctgc cctgaaggcg gcggcgagga
     3421 tattttcgcc cattattcca ccattcaaat ggatggttac agaacgctta aagccggaca
     3481 gtctgtccgg tttgatgtcc accaggggcc aaaaggcaat cacgccagcg tcatcgtgcc
     3541 catcgaagca gaggccgttg catagctcct ctgtctcatt gtgtacatcc agaaggcaaa
     3601 atgccagccc gatcggctgg catttttatt taacgccagt gcctggtggc gacactgttg
     3661 catcttatca ggccgacaaa tgacgtcagc aagattactc tcttgccagc gcatccaccg
     3721 ggtccagtcg cgccgcgttt ctcgccggta gccagccaaa caatatcccg gtaaacgtcg
     3781 aacataaaaa cgcgctcgcc agcgctgtca gtgaaaaacc gatctcccag ccgggcagga
     3841 aaagctgtag cataaatgcg atgaacatcg acaagctaat ccccagcgct ccaccaacca
     3901 ggcaaaccag caccgcttca ataagaaact gctgtagcac atcgctggcg cgcgcgccta
     3961 ccgccatacg gatgccgatt tcacgcgttc gctcggtgac ggaaaccagc ataatattca
     4021 taacgccgat gccgccgaca accagcgaaa tgacggccac cagcgtcaga aataactgaa
     4081 gagtataggt ggttttttca gccgttttca ggacgctgtc catattccag gtgaagaagt
     4141 cttttttacc gtggcgtaag gtgagcaggc gggtaagctg ctgttcagcc tgatcgctat
     4201 caacgccatc tttcacacga acggtgatcg agttaagcca tgactgaccc attatgcgat
     4261 ctgacatcgt gctatagggc aaccaaactt gcaacagatt gctattgccg tacatggacg
     4321 gtttctcttc cgccacgcca ataacaataa ccggcatatt acccaccagc accacttctc
     4381 ctacgacatt cgctttattt ggaaatagct ggcgtcgcgt gttggcatcc aacaccacca
     4441 cctgcgcgcg atcctgttgc tgtacagcat tgaaggtgtt cccctcccta aaggacatgc
     4501 cgtaaacgtt aaaataatcg ccactgacgc cattagcatt tacggcaata tcaatattgc
     4561 catagcgaag acgtaagctc tttgaaacgc tgggcgtcgc agagttaacc cacggctgtt
     4621 tctgaatagc caccagatcg tcatatttca gcgcctgtcg atactgcggg ttgtcgtcgc
     4681 caaaatcttt gcctggatga atatcaatcg tgttagtgcc catagcgcgg atatccgcca
     4741 gtaccatctg ttttgcggcg tcgccgacca ccacaatcga caccaccgac gcaataccga
     4801 taataattcc cagcatggtc agtaaagtac gcattttgtt agcggccatc gctaaccacg
     4861 ccatcgacag cgcttcgcga aagctgctgg caaattgccg ccagccggga gccgtattaa
     4921 ctacggcagc gtcaacgccc tgttcgcgtt tcttttcctg cgcgggcgga ttatggacaa
     4981 tcttgccatc gtgaatttca ataatccgct ccgcctgggc ggcaatcagc ggatcgtgcg
     5041 tcacaatgat caccgtatgt ccgcgatcgc gcagttggcg caaaatcgcc attacctctt
     5101 cgccggaatg gctatccagc gcgccggtcg gctcatccgc cagaatcacc tgtccgccgt
     5161 tcatcagcgc gcgggcaata ctgacacgct gctgctgtcc gccagaaagc tgtgaaggtg
     5221 gataatcgac gcgatcgctt aatcccagcc gcaaaagcaa ctctctggcg cgcgcctggc
     5281 gttttttgcg ttcaatgccg gcgtagacgg cggggatttc aacattttgc gctgccgtta
     5341 aatgcgacaa cagatggtag cgctgaaaga taaagccaaa atgctcacgc cgcagctgcg
     5401 ccagcgcgtc cgggtccagc gtcgagacgt cccgccccgc cacccgataa gtgccgctgg
     5461 tcggtttatc caggcacccg aggatattca tcagcgttga ttttccagaa ccggaaacgc
     5521 cgacgatcgc caccatctcc ccggcgtgga tttgcaggga gatatctttc aacaccgcca
     5581 cctgctcttc tccggagggg tagctgcggc tcacattgca cagttcaagc aatgccgtca
     5641 tggcgtcgct cctggcctgc tctcgccgat gatcacctca tcgcccgctt ccagaccttt
     5701 aaccacttcc acgtctgtat cgttacgctc gccaatgacc acttcgcgct cacgtttttc
     5761 gccgttacgc aacagcgcca ctttataacg attaccgccc accggctcgc caagcgcggc
     5821 gagaggaata atcagcacat ttttgacatc catgagttga atataaacct gtgcggtcat
     5881 atcaagacgc aagattcttt tgggattcgg cacttcaaac cgggcgtaat aaaaaatagc
     5941 gtcgttgatc ttttccggcg tcggcagaat atcttttaaa acgccttcat agcgcgtttg
     6001 cggatcgcct gcaatggtga accatgcttt ctgccccgcc cgaagatgga tcacgtccgc
     6061 ttccgagacc tgcgctttta ccagcatggt gctcatatcc gccagcgtca gaatattggg
     6121 cgcctgctga gctgcaatca ccgtttgtcc ttgcagggta gtgatttgcg tcacttcccc
     6181 cgccatgggg gcgacaatac gggtatattc caggttggtt ttcgcggtgt ccaacgaggc
     6241 ccgattacgt ttgatctggg catctatggt gccaatacgc gcctgtttaa ccgccaactc
     6301 cgtcgccgca gtatccagat cctgttgcga taccgcctga gtcttagcta actgctgctg
     6361 gcgcgccagc gtaacccgcg ccagctttaa ctcagcggct gcctgctgac gctccgcgtt
     6421 cagctccatc agggtggcct cgacctcttt tatctggttc tccgcctgat ctgggtcaat
     6481 cacgccgagt agctgatctt ttttaacgtt atcgccaatg gagaccagca gcgttttcaa
     6541 ctggccgctc acctgcgcgc cgacatccac tttacgcaac gcgtccagtt ttccagtcgc
     6601 cagtacactc tgttcaagat cgcctggccg cacgattaat gtctgataag ttggcagcgg
     6661 cgcatttatc attcgccagc taaccatccc ccccactaaa agaattaaaa taatgaccag
     6721 ataacgcttt ttaaatttct ttcccttagc acgcatagaa accctgacgg caaaatttta
     6781 accagaaagt aaaccgtatc taaacaaacc tgacgcaata aagatagcgc cggctgtatt
     6841 gacgattggt taatgtttcc tgtggttcaa tctcgacaat cttatgtcgc ggattacgat
     6901 catgacacag cttacagata atacctggta cacttcagat tacatctctc ctttacaatt
     6961 atttattcgt ctgacgcgcg ggcaattaca gccaggaaaa ttctggcgta aagccagctt
     7021 tcgtcgcaag tttttaatcc gctcattagt catgccgcgt gcaaccagcc aattactgac
     7081 caatctcacc caatggccga agttaaatac gttacttgct cgtcagccgc gtttgcctat
     7141 tcggctacat cgtccttata tggctgtaaa tattaaacgc gatttcgcct tagacgctct
     7201 gtgttttcat tatcaacaga tgcgccaact tttatcgcgg gaacaacaag ttagctattt
     7261 aagtcagtat ggcctgaatc ttgctaaatt tgaagctaaa accggcgagt tgtttcaact
     7321 tgatttagtc agtctggtct cactggataa agaaggtgaa agcactattg ttgttcgcga
     7381 cgcacagtta cgtattctgg cagagatcac atttaccctg tgtcgcttta accaacaacg
     7441 cacactattt atcggcggat tacagggcgc ggcaaacgac gtccctcacg aaattatcca
     7501 gcaggcgacc aaagcctgcc atggtctttt tcccaaacgc atcgtgatgg aggctctctg
     7561 tcagtttgcg caagtctttc aggcagaaaa gattatagcc gtgagtaacg atgcgcacgt
     7621 ttatcgtagc tggcgataca tggataaaaa gacgcaaatg catgccgact atgacgcgtt
     7681 ttgggaatcg ttaggcggtg aaagaattaa agggaattac tatacgctgc cgctggcgat
     7741 cgcccgaaaa agcgaagcgg agatcgccag taaaaaacgg gccgagtatc gccgccgcta
     7801 tgcattactc gatagcgtcg tcgaacaggt tccggccaca ttcaaacgct aatccgcccg
     7861 gccccgcgcc agccaaacca cgcgcgagaa catctttctg aacagcggcg gcacggcgtc
     7921 aattccgcgc cgcccggctt ccatcgcgac ttcaatcgcc aaatccggct ttgacgagcg
     7981 gtggatagct ttagtgataa ttttccgggt attcatcggc acattaagcg gaagttgcgc
     8041 aacccggtga aaaacatcgg caaagccctg acgatacata aaatgttcca tatccagcgt
     8101 aggcagcgcc gtgagatgtt cgcgttcttc ttcccgatcg ttattaagca ggctgcggac
     8161 cgtcgcggca tattttttcc ccgcttcgtc gccatccacc aggacatgcc actcgattcc
     8221 catacggcgg gcgaacttca ccagcggttt caggccagac tgagcaaatt caatgacttt
     8281 aattccctcc gcatcaaaat gatgtccaca ctgacgcgcc agctcattaa taacccaggt
     8341 ttccgtctcg ccttccacca gtagccagca acgcgcaaac agcgacgacg cgcgattaaa
     8401 gcggatatga aaggcgatgc gccgtccatc ttccgcgctt aacccgcccg tgcccagacg
     8461 ccaggcggcg acgcgggaag attcgcgcac cagccgtacg acatgctcca ccggcgttag
     8521 cgagagcagt tcgcctgagt tggttgtcgc tatccgctgt agcggtaaca gattgagcaa
     8581 ttgccaggcg actgaaagca taatgggatg taaacgggtt tccggatctt ccaccagcag
     8641 taatggtcgc gcgtctttat gtaaccgcag cgtccctttc gcctgtaaca gcgtggagaa
     8701 aagccccagc aggatcaccc gatgcgaccg gctgcccggt ttgtcgatca tccgattaat
     8761 aatatccaga tagcgccagc tacgctgctc attttgcgaa cgccggcgca tgagtcggtg
     8821 acgcgcctgt cctgcgccct gctctgagaa atagtgttca agcagttgca ccatcgcgga
     8881 cagtccctga cgaatctgcc cgtcggttaa attttgcggc cgggtcgcca gctcacgcgc
     8941 cagaaaatcc agttgccggg ccgtgacttc aacatccggc acattgggca ccgtgccgtt
     9001 gcgaatacgt cgcataaagc gcgcatcgcg caaacgtagc actggcatca gacgaaccag
     9061 gtggcgcacc tgatcgttaa tattttccac cggcaatggc tgcccatcgc tattgagaaa
     9121 actgcgcagc gtcatcacgc tgccatcggc gccacattcg ccctctagac gataaaaaat
     9181 acggtgaaaa tcatcctcgc aaggcgacca gcatgcttcc agcgcccgat aacgacgtac
     9241 ccgatgccgc cctggctgcg tttcgcgaaa agtcagaata atatgcaggt gatgctcgcg
     9301 tccttttatg tcgccaggcg gaaaccagaa atcctcacgg acaaaatggt agagatcgag
     9361 ttccggcgac aataacagag tcagcgcatc cagcaggctg gatttgcccc aggcgttttc
     9421 cccaatcagc acgttgtttt gctccagcat caacgatagt cggttgatac cgcgaaatcc
     9481 tactatttca acgcgttcga gaatcatgct tcctccagaa aaacgtcacc actccattaa
     9541 actcaccgca gtataacggc aaatgcttcc gcctggcgtg atattccccc ctttgcctgg
     9601 ggcaactgtc tgataaatgt acggctgacg gtgtcgcttt actgatagtc tggaattcgg
     9661 tagtgtcatg tacgctattc aaacaataaa aaagggcccg gctgttcatg ttttcaggac
     9721 ttttaatcat tctggttcca ctgattgtgg gctatctcat tccactgcga cataaagccg
     9781 cattacaact cattaaccgg ctactgagct ggatcgtgta ccttattctc ttttttatgg
     9841 gaataagcct ggcgtttttg gataacctcg ccagtaatct ggtggcgatt tttcattatt
     9901 ccgccgtcag tattacgatt attttattgt gtaatatcgc cgccttattg tggctggaac
     9961 gtatcctccc gtggcgtcac catcatcagc aggaaaaact gccttcgcgt attgccatgg
    10021 cgctggagtc gctgcaactg tgcggcgtag tggtattggg gtttatcatc ggcctgagcg
    10081 gactctctgt tttacagcac gccaccgaag ccagtgaata tacgctgatc tttttattgt
    10141 tcctggtggg gattcagcta cgaaatagcg gcatgacctt aaagcaaatt gtgcttaacc
    10201 gccggggaat gatggtcgcg gtcgttgtcg tggcaagctc attactgggc ggcgtgatta
    10261 atgcgtttat cctggactta ccgctaaaaa ccgccatggc gatggcgtca ggtttcggct
    10321 ggtactctct ttccggtatt ttgctgacgg agtcgtttgg accggttatc ggcagcgcgg
    10381 cattttttaa cgatctggcc cgcgaacttt tggccattat gcttattccc ggtctggttc
    10441 gccgcagccg ttcaacggcg ttgggcctgt gcggagcgac ctcaatggac tttacgttgc
    10501 cggtattaca gcgctccggt ggcgtagaga ttgttccggc ggctatcgta catggcttta
    10561 tcctcagcct gctggtacct ctcttaatgg cgttcttctc ggcctgatac ctctctggcg
    10621 gtaggtatct gccgccaaaa ttgcgctaaa tcaatctcct tgcacattat ggcagaaatc
    10681 ccttttatcc ctttg
//
LOCUS       DAJVSD010000152        10689 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.152, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000152 DAJVSD010000000
VERSION     DAJVSD010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10689)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10689)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10689
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.152"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(222..2795)
                     /gene="clpB"
                     /locus_tag="OQP62_003065"
     CDS             complement(222..2795)
                     /gene="clpB"
                     /locus_tag="OQP62_003065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002461515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HCS1722553.1"
                     /translation="MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGG
                     SIRPLLTSAGINAGQLRTAIDQALSRLPQVEGTGGDVQPSSELVRVLNLCDKLAQKRG
                     DNFISSELFVLAALESRGTLTDLLKSAGATTANITQAIEQMRGGESVNDQGAEDQRQA
                     LKKYTVDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG
                     LAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF
                     IDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQ
                     KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAID
                     LIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELDD
                     KERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPE
                     LEKQLEAATQSEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLEGEREKLLRMEQEL
                     HSRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD
                     SDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA
                     HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYGRMKEM
                     VLGVVSQNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDE
                     ALKLLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEANDDRIVAV
                     Q"
     gene            complement(2925..3656)
                     /gene="pgeF"
                     /locus_tag="OQP62_003066"
     CDS             complement(2925..3656)
                     /gene="pgeF"
                     /locus_tag="OQP62_003066"
                     /EC_number="1.10.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase"
                     /protein_id="HCS1722554.1"
                     /translation="MNALIVPQWPLPKGVAACSSTRIGGVSLSPYDSLNLGAHCGDNP
                     EHVEENRKRLFAAGNLPSKPVWLEQVHGKNVLRLTGEPYASKRADASYSNTPGTVCAV
                     MTADCLPVLFCNREGTEVAAAHAGWRGLCEGVLEETVTCFADKPENIIAWLGPAIGPA
                     AFEVGPEVRDAFLAKDAQADSAFLPHGEKFLADIYQLARQRLANTGVEHVYGGDRCTF
                     SESETFFSYRRDKTTGRMASFIWLI"
     gene            complement(3653..4633)
                     /gene="rluD"
                     /locus_tag="OQP62_003067"
     CDS             complement(3653..4633)
                     /gene="rluD"
                     /locus_tag="OQP62_003067"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017383977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HCS1722555.1"
                     /translation="MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQR
                     VLVNGQLCDKPKEKVLGGERVAIDAEIDEEIRFEAQDIPLDIVYEDDDILVINKPRDL
                     VVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVE
                     SLQLREITREYEAVAIGHMTAGGTVNEPISRHPTKRTHMSVHPMGKPAVTHYRIMEHF
                     RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDQVYGGRPRPPKGASEEFISTLRKFDR
                     QALHATMLRLYHPVSGIEMEWHAPIPQDMVDLIDAMRADFEDHKDDVDWL"
     gene            4765..5502
                     /gene="bamD"
                     /locus_tag="OQP62_003068"
     CDS             4765..5502
                     /gene="bamD"
                     /locus_tag="OQP62_003068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HCS1722556.1"
                     /translation="MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQ
                     DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFMRLNPTH
                     PNIDYVMYMRGLTNMALDDSVLQGFFGVDRSDRDPQHARAAFNDFSKLVRSYPNSQYT
                     TDATKRLVFLKDRLAKYEYSVAEYYTARGAWVAVVNRVEGMLRNYPDTQATRDALPLM
                     ENAYRQMQLNAQADKVAKIIAANSKNT"
     gene            5774..6112
                     /gene="raiA"
                     /locus_tag="OQP62_003069"
     CDS             5774..6112
                     /gene="raiA"
                     /locus_tag="OQP62_003069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HCS1722557.1"
                     /translation="MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE
                     PQGFIADATINTPNGHLVASAKHEDMYTAINELINKLERQLNKVQHKGEARRATASVK
                     DASFVEAEEE"
     misc_feature    6215..6340
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01859"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Phe leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF01859"
     gene            6216..6263
                     /gene="pheL"
                     /locus_tag="OQP62_003070"
     CDS             6216..6263
                     /gene="pheL"
                     /locus_tag="OQP62_003070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_449055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pheA operon leader peptide PheL"
                     /protein_id="HCS1722558.1"
                     /translation="MKLTRFFFAFFFIFP"
     gene            6363..7523
                     /gene="pheA"
                     /locus_tag="OQP62_003071"
     CDS             6363..7523
                     /gene="pheA"
                     /locus_tag="OQP62_003071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydratase"
                     /protein_id="HCS1722559.1"
                     /translation="MTSENPLLALRDKISALDEELLALLAKRRALAIEVGQAKLLSHR
                     PVRDIDRERALLDRLIHLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNNTHPH
                     SARIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFTDIFHQVETGQADYAVVPIEN
                     TNSGAINDVYDLLQHTSLSIVGEMTVTIDHCVLVSGATDLNTIETVYSHPQPFQQCSK
                     FLSRYPHWKIDYTESTSAAMEKVAQANSPRVAALGSEAGGMLHGLQVLERIAANQTQN
                     ITRFLVLARKAINVSDQVPAKTTLLIATGQQAGALVEALLVLRNHNLIMTKLESRPIH
                     GNPWEEMFYLDIQANLESQVMQSALKELGEITRSMKVLGCYPSENVVPVEPA"
     gene            complement(7484..8392)
                     /locus_tag="OQP62_003072"
     CDS             complement(7484..8392)
                     /locus_tag="OQP62_003072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HCS1722560.1"
                     /translation="MTTPHLLFDYVGHLPECPTWSEDESALYWTDILEQEIYRYHPAS
                     GTHSVLAFPEEVGCFALREQGGFIVAMRHAIWLADKNGLLQRKVCDNPSNTKLARFND
                     GGTDGDGRFYAGTFWAPGDYNGALLMRIDHDLTAKVIQCGIQGHNGLAFSPDNQWMYT
                     SDTPNGVIYRTLLDKHGEPGKRELFRHFGEGEGLPDGAAMDSEGCYWSAMFDGWRVAR
                     FSPQGEQLEEYRLPVRCPTMVCFGGADMKTLFITTTRENMSAQEVADYPLSGAIFTLQ
                     VAVAGMKKSRFIERQAGSTGTTFSLG"
     gene            complement(8450..9571)
                     /gene="tyrA"
                     /locus_tag="OQP62_003073"
     CDS             complement(8450..9571)
                     /gene="tyrA"
                     /locus_tag="OQP62_003073"
                     /EC_number="1.3.1.12"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydrogenase"
                     /protein_id="HCS1722561.1"
                     /translation="MVAELTALRDQIDDVDKALLNLLAKRLELVAKVGEVKSRFGLPI
                     YVPEREASMLASRRAEAEAIGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVV
                     IVGGGGQMGRLFEKMLTLSGYQVRILEQQDWPRARDIVADAGMVIVSVPIHVTEQVIA
                     QLPPLPSDCILVDLASVKSGPLQAMLAAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGR
                     QPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQ
                     LLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSERNLALIKRYYKRFGDAIGLLEQG
                     DKQAFIDSFRKVEHWFGDYARRFQNESRVLLRQANDSRP"
     gene            complement(9581..10651)
                     /gene="aroF"
                     /locus_tag="OQP62_003074"
     CDS             complement(9581..10651)
                     /gene="aroF"
                     /locus_tag="OQP62_003074"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroF"
                     /protein_id="HCS1722562.1"
                     /translation="MQKDALNNVRITDEQVLMTPEQLKAAFPLSLAQEAQIAQSRGII
                     SDIIAGRDPRLLVVCGPCSIHDPETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTT
                     VGWKGLINDPHMDGSFDVEAGLKIARQLLVELVNMGLPLATEALDPNSPQYLGDLFSW
                     SAIGARTTESQTHREMASGLSMPVGFKNGTDGSLATAINAMRAAAQPHRFVGINQAGQ
                     VALLQTQGNPHGHVILRGGKAPNYSPADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDY
                     RRQPAVAESVVAQIKDGNRSIIGLMIESNIHEGNQSSEQPRSEMKYGVSVTDACISWE
                     MTDALLREIHKDLSGQLAVRVA"
BASE COUNT         2591 a         3029 c         2565 g         2504 t
ORIGIN      
        1 cagacttctt aacgaagtct tcctgacccg gcggcctgta tgccgttgtt ccgtgtcagt
       61 ggtggcgcat tatagggagt tattagagcc tgacaagacc taaatgcaaa aaaaagctca
      121 accgttcact tttcaaacaa catttgaatc aaaagcctat ttttgcctgg tttttaaaca
      181 aaaacgagcc cgttagggcc cgttttattc aaatttgtga cttactgcac tgccacaata
      241 cgatcatcat tggcttcaag gcgaatcact ttgccaggaa ccagttcacc agacaggatt
      301 tgctgcgcca gtgggttttc gatctgctgt tgaatagcac gttttaacgg acgcgccccg
      361 tagaccggat cgtaaccgtt ggcgctcaac agtttcagcg cctcgtcgga gatatggatt
      421 tcataaccac gttcttccag acgtttgtac agacgctgca gctggatctg agcaatagaa
      481 gcgatgtgtt gctcacctaa cggatggaat accacaactt catcaatacg gttgataaat
      541 tccggacgga agttttggct aaccacaccc agcaccatct ctttcattcg accgtaatcc
      601 agttcgccaa agcgctcctg aatgagatcg gaaccgaggt tagaagtcat aatgaccacc
      661 gtattacgga agtcgaccgt tctcccctgc ccgtcagtca gtcgaccgtc gtccagcacc
      721 tgcaacagaa tgttgaatac atccggatgc gctttttcca cttcatccaa caagatgacg
      781 gaataagggc gacggcgcac cgcttccgtc aaataaccgc cttcttcata gccgacatat
      841 cctggaggcg ccccgaccaa acgagacacg gagtgtttct ccataaactc agacatgtcg
      901 atacgcacca tcgcgtcgtc gctgtcgaac ataaagttag ccagcgcttt acacagttcg
      961 gttttaccga ccccggtcgg cccaaggaac aggaaggaac caatcggacg gttcggatcg
     1021 gacagccccg cgcggctacg gcgtatggcg ttcgatactg cttcaacggc ttcattctgc
     1081 ccgatcacac ggctgtgtaa ctcttgttcc atacgcaaca gtttttcacg ttcgccttcc
     1141 agcattctgg aaaccggaat accggtccag cgcgccagca cttcggcaat ttccgcatcc
     1201 gttactttgt tacgtaacag acgcatggtt ttaccttccg actgggtcgc ggcttccagc
     1261 tgtttttcca gctccggaat tttgccgtac tgcagttcag acattcgcgc gaggtcgcca
     1321 acgcgacgcg cctgctcgat ggcgatcttc gcctgctcca gctccgcttt aatagtttgc
     1381 gtaccagaga gcgacgcttt ttccgctttc cactcttctt ctaactcaga gtactgacgc
     1441 tctttatcgt ccagttcttc attcagcata tcgagacgtt ttttactcgc ctcgtcagac
     1501 tctttcatca acgcctgctg ttccagtttg agctgaataa tgcggcggtc gagcctgtcc
     1561 agctcctccg gcttcgagtc aatctgcata cgaatgctgg atgccgcttc atcgatgagg
     1621 tcgatagctt tatccggtaa ctgacggtcg gcgatatagc ggtgagataa tgttgccgcc
     1681 gccacaatcg ccgggtcagt gatctgcaca tggtgatgca gttcataacg ctctttcaga
     1741 ccacgcaaaa tcgcaatggt gtcttccacc gacggctctg ccacgaacac tttctggaat
     1801 cgacgttcca gcgccgcgtc tttttcgatg tactgacgat attcgtccag cgtggtggcg
     1861 cccacacagt gcagttcccc acgtgccagc gccggtttca gcatgttacc ggcatccatg
     1921 gcgccatcag ctttacctgc gccaaccatg gtgtgcagct cgtcgataaa caggatgacg
     1981 ttgccttcct gttttgcgag gtcgttcagc acgcctttca gacgctcttc aaattcgccg
     2041 cgatatttcg ccccggccac cagcgcgccc atatccagcg ccagcacgcg acggcctttc
     2101 aggccttccg gtacttcacc gttgataata cgttgcgcca gcccttcaac aatggcggtt
     2161 ttacctacgc ctggctcacc gattaacacc gggttgtttt tagtacgacg ttgcaatacc
     2221 tgaatggtac ggcgaatttc ttcatcacga ccaattaccg ggtcaagctt accttgttca
     2281 gcccgctcgg tcagatcgac ggtatatttt ttcaaggcct gacgttggtc ttcagcccct
     2341 tgatcgttca cgctttcacc tccgcgcatc tgttcaattg cctgagtgat attggccgta
     2401 gtcgcaccgg ctgatttcag cagatcggtt aacgtgccgc gagactcaag cgccgccaga
     2461 acaaacagct ctgacgaaat aaaattgtcc ccccgttttt gcgccagctt gtcgcaaagg
     2521 ttcagtacgc gtaccagttc cgaagaaggc tgtacgtcgc cgccggtgcc ttccacctgc
     2581 ggtaaacggc tcagcgcctg atcgatagca gtgcgcaact ggccagcatt aatgccggcg
     2641 gaggttaata aaggacgtat cgatccccct tcctggttca gcaaggcgct cattaaatga
     2701 agaggttcga tgaattggtt gtcgtgcccc agcgcgagcg actgggcatc ggcaagagca
     2761 agctggaatt tgttagtaag acgatccaga cgcataactc ctcccataac aggtcaaaat
     2821 tgctactgga gattaaatga ggtcatccct caattattca aggtgaatga cctgaattat
     2881 gtgaaaagaa agttacccgt accggatcgt cttgattctt taggttatat cagccaaata
     2941 aaacttgcca tacgacctgt cgtcttgtcg cgacgataag agaagaaagt ctcactttcg
     3001 ctaaaggtgc agcgatcccc gccatagaca tgttcaacgc cagtattcgc cagacgttgg
     3061 cgtgcaagct gataaatatc cgccagaaat ttttccccgt gcggcaaaaa tgcgctatcg
     3121 gcttgcgcat cttttgctaa aaatgcgtca cgcacttccg gccccacttc aaacgcggcc
     3181 gggccaatcg ccggacctaa ccaggcgatg atattttctg gtttgtcagc aaagcaggtg
     3241 acagtttcct ccagtacgcc ttcacataat ccgcgccagc ccgcatgagc cgccgccact
     3301 tctgtcccct cacggttaca gaatagcaca ggcaggcagt ctgccgtcat taccgcgcag
     3361 acggttcctg gcgtattgct gtaagacgca tccgcacgtt tggaggcata aggttctccg
     3421 gtaagcctca atacattttt accgtgaacc tgttcaagcc agacaggttt cgaaggcaga
     3481 ttgcccgccg cgaacagacg cttgcggttc tcttcaacat gctccgggtt atcgccgcaa
     3541 tgcgcgccca gattcagcga gtcgtaaggc gataaactca ccccaccaat acgggtagaa
     3601 ctacaggctg cgacgccttt cggcagcggc cactgcggga caatcagtgc attcataacc
     3661 agtccacatc atctttatga tcttcgaaat cggcgcgcat cgcatcgata aggtccacca
     3721 tatcttgtgg aatcggcgcg tgccactcca tttcgatacc cgatacagga tggtagagac
     3781 gcagcatcgt tgcatgcagc gcctggcggt caaacttacg cagcgtggaa ataaattctt
     3841 ccgatgcgcc tttcggtgga cgtggacgac caccgtagac ctgatcgccc actaacggat
     3901 gcgtaatatg cgccatatgc acgcggatct ggtgcgtacg cccggtctcc agacgcaacc
     3961 taagacgcgt gtgcacacgg aaatgttcca taatgcggta gtgggtcacc gccggtttgc
     4021 ccataggatg caccgacata tgggtacgtt tggtcgggtg acgactgatg ggttcattca
     4081 ccgttcctcc cgccgtcata tgtccgatcg cgaccgcttc atattcgcgg gtgatctcgc
     4141 gcagctgcaa agactccacc aggcgcgttt gcgccggaac ggttttggcc accaccatca
     4201 gccccgtcgt gtccttatcc agacgatgca caatgcccgc gcgcgggaca tccgcaatcg
     4261 gcggataata atgtagcaac gcgttcagta ccgtaccgtc cgggttaccc gcgccaggat
     4321 gtaccaccag atcgcgtggt ttgttgataa ccagaatatc gtcatcttca taaacaatat
     4381 ctaacgggat atcctgcgct tcaaaacgaa tctcttcgtc gatctccgca tcaatagcca
     4441 cccgctcgcc gcctaacact ttttcttttg gcttatcgca aagttgacca ttgaccaaca
     4501 cgcgctgatt caaaatccat tcttttatac gcgaacgtga ataatccggg aacatttcgg
     4561 ccaaagcctg atctaagcgt tgaccgagtt ggttttcgga gaccgttgcg gtgagttgta
     4621 ctcgttgtgc catatacagc ttcttcgttt aacgttgggt tttacggctt tgccgtttaa
     4681 tatagtgtgc tattgtagct ggtcttaacc gggagcagga acagagaatc tcccgtaaaa
     4741 cattttgagg aaagtcaaaa cgtcatgacg cgcatgaaat atctggtggc agcagccacg
     4801 ttgagcctgt ttctggcggg ttgctcgggt tcaaaggaag aggtgcccga taatccgccg
     4861 aatgaaatct acgcgactgc tcagcaaaag ctgcaggacg gtaactggaa acaggcaata
     4921 acgcaattgg aagcgttaga taatcgttat ccattcggac cgtattctca gcaggtgcag
     4981 ttggatctta tctacgccta ttacaaaaac gccgatttgc cgctagcgca ggccgccatc
     5041 gatcgtttta tgcgtcttaa tccaacgcac cctaatattg actatgtcat gtacatgcgc
     5101 ggcctgacga acatggcgct ggatgatagc gtgctgcagg gtttctttgg cgtcgatcgc
     5161 agcgatcgcg atccgcaaca tgcgcgggcg gcgttcaatg acttttcgaa actggtacgc
     5221 agctatccta atagccagta caccaccgac gccactaagc gtctggtatt cctgaaagac
     5281 cgtctggcga aatatgaata ttccgtcgca gagtactata ccgcgcgcgg cgcatgggtt
     5341 gcggtcgtaa accgggtaga aggtatgcta cgcaattatc ctgatacgca ggccacgcgc
     5401 gatgcgttgc cgctgatgga aaacgcctat cgtcagatgc agctgaatgc gcaggctgac
     5461 aaagtcgcga aaattattgc cgctaacagc aaaaacacct gaagcaatac caacaagcaa
     5521 aacggcagcc ttccggctgc cgttttttta ttcgatatct gatgcaacag aaatgatttc
     5581 actgcaacgc atccagtcaa atatggcctg ctttcagcca ttcctcaagt aaaagatcgc
     5641 ttcttcctgc gatgcctcac aaaaagttcg ccttgacaaa aagtgacaaa ataatgtgat
     5701 ttacatcaca cattttgaca ttaagaacgg tatgctggaa tcaccaagac gggaaagaca
     5761 agaggtaaaa tttatgacaa tgaacattac cagtaaacaa atggaaatta ctccggcaat
     5821 ccgccaacat gtcgcagacc gtctcgccaa actggaaaaa tggcaaactc acctgattaa
     5881 tcctcatatc attctgtcta aagagccaca gggctttatt gctgacgcca ccattaatac
     5941 accgaacgga catctggtcg ccagcgcaaa acacgaagat atgtacaccg ctattaatga
     6001 attgatcaac aagctggaac ggcagctcaa taaagtgcag cacaaaggcg aagcccgtcg
     6061 tgccaccgca tcggtgaaag atgccagctt cgtcgaagca gaagaagagt agtcccttac
     6121 attgagtgta tcgccaacgc gccttcgggc gcgttttttg ttgacaggat taaaacagta
     6181 cgggtactgt acttacgtac acaaaggaaa cagttatgaa gctcacccgg tttttcttcg
     6241 cattcttttt tatcttcccc tgaccgggag gcgtttcgtc atgtgataaa gaatgcgaag
     6301 acgaacaaga aggcctcccc caccgggagg ccttttttat tgataacaaa aaaggcaaca
     6361 ctatgacatc ggaaaaccca ttactggcgc tgcgagataa aatcagcgct ttagacgaag
     6421 agttactggc cttactggca aaacgacgcg cgctggcgat tgaagtggga caagcaaaac
     6481 tactgtcgca tcgtccggtt cgggatatcg atcgtgaacg cgcgctgctg gacagactca
     6541 tccatctcgg taaagcccac catctcgacg cacactacat tacccgtctg ttccagctta
     6601 tcattgaaga ctccgtgctt actcagcagg cgctgctgca acaacatctg aataatactc
     6661 accctcattc ggcacgtatt gcgtttcttg ggccgaaagg ctcctattct catctcgcgg
     6721 cgcgccagta tgctgcacgc cattttgagc aatttattga gagcggttgc gcaaaattca
     6781 ccgatatttt tcatcaggtc gaaaccggcc aggccgatta cgccgtggtt ccgatagaga
     6841 acaccaactc cggcgctatc aacgatgtgt acgacttatt gcaacacacc agtctgtcga
     6901 ttgtcggtga gatgaccgtc actatcgatc actgcgtgct ggtttccggc gctacggatc
     6961 tgaataccat cgaaacggtg tacagccatc cgcagccgtt tcagcagtgc agtaaatttt
     7021 tgagccgcta tccgcactgg aaaatcgact ataccgagag tacgtcggca gcgatggaaa
     7081 aagtcgcgca ggcaaactct ccgcgcgtcg cggcgctcgg cagcgaggca ggcggcatgt
     7141 tgcacggttt acaggtgctg gaacgcatcg ccgcaaacca gacacagaat atcacccgct
     7201 ttctggtact ggcgcgcaaa gccatcaacg tttccgatca ggttccggca aaaaccactc
     7261 tgttaatcgc caccgggcag caagctggcg cgctggtcga agcgctgctg gtgctgcgta
     7321 accacaatct catcatgacg aaactggagt cgcgccccat tcacggcaat ccgtgggaag
     7381 agatgtttta tctcgatatt caggcgaacc tggagtcgca ggtaatgcaa agcgcgctaa
     7441 aagagctggg cgagatcacg cgctcaatga aagtgcttgg ctgctatccc agcgaaaacg
     7501 tcgtgccggt agaacctgcc tgacgttcaa taaaacggct tttcttcatc cctgcgacgg
     7561 ctacctgcag ggtgaagatg gcgccggaga gcggataatc cgccacttcc tgagcagaca
     7621 tattttctct ggtagttgta ataaacagcg ttttcatatc tgcgccgcca aagcaaacca
     7681 tcgtcggaca acgtaccggc aaccggtact cttccagctg ctctccttgc ggtgagaaac
     7741 gcgccacgcg ccagccgtca aacatcgcgc tccagtagca cccttcgcta tccatcgccg
     7801 cgccgtcggg aagtccttct ccttcgccaa aatggcgaaa aagttcacgc ttgcccggtt
     7861 cgccatgctt atcaagtaac gtgcggtata tcacgccatt cggcgtatcg gaagtataca
     7921 tccactggtt gtccgggctg aacgccaggc cgttgtgtcc ctggataccg cactggatca
     7981 cttttgccgt caggtcatga tcgatccgca tcagcaacgc gccattatag tcacccggcg
     8041 cccagaacgt tccggcataa aaacggccat cgccatcagt gccgccatcg ttgaaacgcg
     8101 ccagtttcgt attagaggga ttgtcgcaaa ccttacgctg caataatcca tttttatcgg
     8161 ccagccaaat agcatgacgc atggccacaa taaatccgcc ctgctcacgc aaggcaaaac
     8221 agcctacctc ttccggaaac gccagcacgc tatgcgtccc actcgccgga tggtaacgat
     8281 agatctcctg ttccaggata tcagtccaat acagcgcgct ttcatcctcg ctccatgtgg
     8341 ggcattctgg taaatgtccg acataatcaa ataaaaggtg cggcgtagtc ataacggttc
     8401 cttaaacgaa aaaagccagc aaagctggct tttagtatag atgtcatcat tatggtcggc
     8461 tgtcattcgc ctgacgtaat aacacacggc tttcattctg gaagcgtctg gcataatcgc
     8521 caaaccagtg ttcaactttg cgaaaactgt cgataaaagc ctgcttatca ccctgttcca
     8581 gtaacccgat cgcatcgcca aaacgtttat agtaacgctt gataagcgcc agattgcgct
     8641 ccgacgacat aataatgtct gcatacagct gcgggtcctg ggcgaacaga cgcccgacca
     8701 tcgccagctc cagtcgataa atcggcgatg atagcgccag aagctgctca agctggacgt
     8761 tctcttccgc cagatgcagc ccataagcga aggtagcaaa gtggcgcagc gcctggataa
     8821 aagccatgtt ctgatcgtgc tcgacagcgc taattcggtg caaccgcgcg ccccacacct
     8881 ggatttgctc aaggaaccac tgatacgctt ccggttgacg cccatcacac cagaccacca
     8941 cctgcttcgc caggctcccg ctgtccgggc caaacatcgg gtgcaagccc agcacggggc
     9001 catcatgggc cgccaacatt gcctgtaacg gaccgctttt caccgatgcc agatcgacca
     9061 gaatacagtc ggacggcagg ggcggcagtt gcgctatgac ctgttcagta acatgaatcg
     9121 gcacgctgac gatcaccatt ccggcatcgg cgacaatgtc cctggcgcgc ggccagtcct
     9181 gttgttccag aatacggacc tgatagcccg acagcgtgag cattttttca aacagacgcc
     9241 ccatctgtcc gccgccgccc acaatgacga ccggacgcag agaaggacaa agcgttttga
     9301 accccttatc attttcgctg gagtaagatt cacgcattac ccggcgcagg acatcttcaa
     9361 tgagatcggg cgggacaccg atcgcttctg cttccgcccg tcgtgaagcc agcatagagg
     9421 cctcacgctc cggcacgtaa ataggcaggc caaaacggct tttcacctcg ccgactttgg
     9481 caaccagttc caggcgctta gccagtaaat tcaacaacgc tttatcgaca tcatctattt
     9541 gatcgcgtaa cgcggtcaat tcagcaacca taacaacctc ttatgcgacg cgcaccgcca
     9601 gctggccgct caaatcttta tgaatttcac gtaacagggc atcggtcatc tcccagctaa
     9661 tacaagcatc ggtgacggaa acgccatact tcatttcgct gcgcggctgt tcggaagact
     9721 gattaccctc atgaatatta ctttcaatca ttaagccaat gattgaacga ttgccatctt
     9781 taatctgcgc aaccacagat tcggcaacgg ctggctggcg gcgataatct ttattggagt
     9841 taccatgact gcaatctacc atcagcgaag gacgtagccc cgcctgttcc atctcttttt
     9901 cacactgagc gacatctgcc gggctatagt ttggcgcttt gccgccacgc agaatcacat
     9961 ggccatgcgg atttccctgg gtttgcaata acgcaacctg accggcctgg ttaatgccaa
    10021 caaaacgatg aggttgcgca gcggcgcgca tggcgttaat cgctgtcgcc aggctgccat
    10081 ccgtgccgtt tttaaagccg accggcatag aaagaccaga cgccatttcg cggtgggttt
    10141 gcgattcggt tgtgcgcgcg cctatcgccg accagctaaa cagatcgccc aggtattgcg
    10201 ggctgttcgg atccaacgct tcggtcgcca atggcaaccc catattcacc agttccacca
    10261 gtagctgacg cgctattttc aacccggctt ccacatcaaa tgagccatcc atgtgaggat
    10321 cgttaatcag ccctttccag ccgacggtag tccgcggctt ttcaaaatag acgcgcatta
    10381 ccagatagag gctatcgctg acctctgcgg caagggcttt aaatcgacgg gcatattcca
    10441 gagcggtttc aggatcgtga atagaacaag gaccgcatac caccaacaga cgcggatcgc
    10501 gcccggcaat aatgtcagaa atgattcccc gggactgcgc tatctgcgct tcctgcgcca
    10561 ggctcaacgg aaaggccgct ttaagctgct ccggcgtcat taatacctgt tcatcggtga
    10621 tacgtacgtt attcagcgcg tctttttgca tgatggcgat cctgtctttt cttgtttgcg
    10681 atagttgat
//
LOCUS       DAJVSD010000153        10660 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.153, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000153 DAJVSD010000000
VERSION     DAJVSD010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10660
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.153"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..657)
                     /gene="prmB"
                     /locus_tag="OQP62_003075"
     CDS             complement(<1..657)
                     /gene="prmB"
                     /locus_tag="OQP62_003075"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HCS1722563.1"
                     /translation="MDKIFVDEAVSELHTIQDMLRWAVSRFSAANIWYGHGTDNPWDE
                     AVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRINERIPVAYLTNKAWFCGH
                     EFYVDERVLVPRSPIGELINNHFAGLISQQPKYILDMCTGSGCIAIACAYAFPDAEVD
                     AVDISPDALAVAEHNIEEHGLIHHVTPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSD
                     L"
     gene            823..1374
                     /gene="smrB"
                     /locus_tag="OQP62_003076"
     CDS             823..1374
                     /gene="smrB"
                     /locus_tag="OQP62_003076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease SmrB"
                     /protein_id="HCS1722564.1"
                     /translation="MKKKTSLSEEDQALFRQLMVGTRKIKQDTIVHRPLRKKITEVPT
                     RRLIQEQADASHYFSDEFQPLLNTEGPVKYVREDVSHFELKKMRRGDYSPELFLDLHG
                     LTQLQAKQELGALIAACRREHIFCACVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPK
                     EYGGDAALLVLIEVEEWQPPELP"
     gene            complement(1423..1908)
                     /gene="sixA"
                     /locus_tag="OQP62_003077"
     CDS             complement(1423..1908)
                     /gene="sixA"
                     /locus_tag="OQP62_003077"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HCS1722565.1"
                     /translation="MQVFIMRHGDAALDAASDSVRPLTSCGCDESRLMANWLKGQKVD
                     IERVLVSPFLRAEQTLDVVGDCMNLPTQVDVLPELTPCGDVGLVSAYLQALANEEIGS
                     VLVISHLPLVGYLVSELCPGETPPMFTTSAIANVTLDESGKGTFNWQMSPCNLKMAKA
                     I"
     gene            complement(2117..4264)
                     /gene="fadJ"
                     /locus_tag="OQP62_003078"
     CDS             complement(2117..4264)
                     /gene="fadJ"
                     /locus_tag="OQP62_003078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid oxidation complex subunit alpha FadJ"
                     /protein_id="HCS1722566.1"
                     /translation="MTTTSAFMLSVRLDNVAVVAIDVPGEKVNTLKAEFAAQVRAILK
                     QIRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPV
                     PVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVG
                     VSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKERLAQRTLPVRERI
                     LAGPLGRALLFRLVRKKTAQKTQGNYPATERIIDVIETGLAQGSSSGYDAEARAFGEL
                     AMTPQSQALRAVFFASTEVKKDPGSDAPPGPLNSVGILGGGLMGGGIAWVTACKGGLP
                     VRIKDINTQGINHALKYSWDLLETKVRRRHIKASERDKQLALISGSTDYRGFSHRDLV
                     IEAVFEDLPLKQQMVAEVEQNCATHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSP
                     VEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILAPYINEAIR
                     MLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGERFSAPANVV
                     ASILNDDRKGRKNGRGFYLYGEKGRKSKKQVDPAIYKLIGVQGQSRLSAQQVAERCVM
                     LMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDALGPGEMVATLQRLA
                     ALYGPRYAPCEQLVRMAERREHFWTNGETDQGN"
     gene            complement(4264..5574)
                     /gene="fadI"
                     /locus_tag="OQP62_003079"
     CDS             complement(4264..5574)
                     /gene="fadI"
                     /locus_tag="OQP62_003079"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461331.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase FadI"
                     /protein_id="HCS1722567.1"
                     /translation="MRQALPLVTRQGDRIAIVSGLRTPFARQATAFHGIPAVDLGKMV
                     VGELLARSEIPADAIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATS
                     FQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKALARVLVDVNKARTTRQRLTLF
                     SRLRLRDLLPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWA
                     EGKLAEEVMTTYVPPYKNPFAEDNNIRGASTLADYAKLRPAFDRKHGSVTAANSTPLT
                     DGAAAVILMTESRAKELGLRPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTM
                     ADLTLFDMHEAFAAQTLANLQLLGSERFAREVFGRAQATGEVDDAKFNVLGGSIAYGH
                     PFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLEAE"
     gene            complement(5752..6036)
                     /locus_tag="OQP62_003080"
     CDS             complement(5752..6036)
                     /locus_tag="OQP62_003080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HCS1722568.1"
                     /translation="MSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFATRAEAEETL
                     AALTEKARSVESEPCQITPTFTEESEGVRLDIDFVFACEAETLIFQLGLR"
     gene            6407..7714
                     /gene="fadL"
                     /locus_tag="OQP62_003081"
     CDS             6407..7714
                     /gene="fadL"
                     /locus_tag="OQP62_003081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416846.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid transporter FadL"
                     /protein_id="HCS1722569.1"
                     /translation="MSQKTLFTKSALAVAVAIISTQAWSAGFQLNEFSSSGLGRAYSG
                     EGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSRRTLDADNIAPTA
                     WVPNVHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYR
                     LNEAWSFGLGFDAVYARAKIERFAGDLGQLVAAQNPALAPVAGQILSDTKIAHLNGNQ
                     WGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLPIAINRFNLPIPTATGGAT
                     QSGYLTLNLPEMWEVSGYNRVAPQWAIHYSLAYTSWSQFQELKAKSTAGDTLFEKHEG
                     FKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFN
                     KDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF"
     gene            complement(7775..8530)
                     /gene="mlaA"
                     /locus_tag="OQP62_003082"
     CDS             complement(7775..8530)
                     /gene="mlaA"
                     /locus_tag="OQP62_003082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding lipoprotein MlaA"
                     /protein_id="HCS1722570.1"
                     /translation="MKLRLSALALGTTLLVGCASSGTEQQGRSDPFEGFNRTMYNFNF
                     NVLDPYVVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAIMVNYFLQGDPYQGMVHFTR
                     FFLNTLLGMGGFIDVAGMANPKLQRVEPHRFGSTLGHYGVGYGPYMQLPFYGSFTLRE
                     DGGDMADTLYPVLSWLTWPMSIGKWTIEGIETRAQLLDSDGLLRQSSDPYIMVREAYF
                     QRHDFIANGGKLKPQENPNAQAIQDELKEIDSE"
     gene            8819..9760
                     /locus_tag="OQP62_003083"
     CDS             8819..9760
                     /locus_tag="OQP62_003083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HCS1722571.1"
                     /translation="MDSLNDDKINRHSSDLEVESEEKQSGKEIEVDEDRLPSRAMAIH
                     EHIRQDGEKEMERDAMALLWSAIAAGLSMGASLLAKGIFHVQLEGVPGGFLLENLGYT
                     FGFIIVIMARQQLFTENTVTAVLPVMQNPTLSNVGLLMRLWGVVLLGNLIGTGVAAWA
                     FEYMPIFDEETRDAFVKIGMEVMKNSPTEMFANAIISGWIIATMVWMFPAAGGAKIVV
                     IILMTWLIALGDTTHIVVGSVEILYLVFNGTLPWSDFFWPFALPTLAGNICGGTFIFA
                     LMSHAQIRNDMSNKRKEEARLRGERLERERKKAEKQR"
     gene            9836..9910
                     /locus_tag="OQP62_003084"
     tRNA            9836..9910
                     /locus_tag="OQP62_003084"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9869..9871,aa:Arg,seq:cct)
     gene            complement(10058..10660)
                     /locus_tag="OQP62_003085"
                     /pseudo
     CDS             complement(10058..10660)
                     /locus_tag="OQP62_003085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014609409.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus and C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         2581 a         2925 c         2679 g         2475 t
ORIGIN      
        1 cagatcggac atatcctccg catcgacata aggcgggtta gtgacaatca gatcgtactg
       61 aactttcggc agatcgcgga acagatcgga acggattggc gtcacgtgat ggataagacc
      121 gtgttcttca atgttatgct cggcgacagc cagcgcatcc ggcgaaatat cgaccgcatc
      181 aacctctgcg tccgggaaag cataagcaca ggcgatggcg atgcagccgc tgccggtaca
      241 catatccaga atatatttcg gctgttggct aataaggcca gcgaagtggt tattaatcag
      301 ctcgccaatc ggtgaacgcg gcaccagcac gcgctcatca acataaaatt cgtggccgca
      361 gaaccaggct ttattggtca ggtaggctac cgggatacgc tcgttaatgc gacgaatcac
      421 tcgctcgaca atgcggtgtt tttcgctgga cgtcagccgc gcggtccgca tatcctccgg
      481 aatatccagc ggcagataaa gagacggcaa caccagttgt accgcttcat cccacgggtt
      541 atcggtaccg tgtccatacc agatattcgc cgcgctaaag cggcttaccg cccagcgcaa
      601 catgtcctga atggtatgca gttcacttac tgcttcatcg acgaaaattt tatccacgta
      661 ttcctccagg gcatgctcgc attaaattcg gcggctagtt tgccacgaag acagggataa
      721 atcagcattg acgcggcggg agaatacgaa aaatccgttt tgaccgttcg gatatcctcc
      781 gggtcgggta aactaaggca aaagatcaga cgagacccac gaatgaaaaa gaaaacatcg
      841 ctcagcgagg aggaccaggc gctgttccgt cagctgatgg tcggcacccg aaagattaaa
      901 caggatacta tcgtccatcg gccactgcgc aagaaaatca cggaagtccc tacccgaagg
      961 ttaattcagg aacaggcgga cgccagccac tatttttctg atgagttcca gccgctgctc
     1021 aatacggaag ggccggtaaa gtatgtccgt gaagatgtca gccatttcga gctaaaaaaa
     1081 atgcgccgcg gcgactattc gccagaactg tttctggatt tacacggctt aacgcagctt
     1141 caggccaagc aggaactggg ggcgctgatt gccgcctgcc gtcgggaaca tattttttgc
     1201 gcctgcgtca tgcatggaca cggtaaacat attctgaaac agcaaacgcc gttatggctg
     1261 gcgcagcatc cgcatgtgat ggcctttcat caggcgccga aagagtacgg cggcgacgcc
     1321 gcgctgctgg tgttgattga agtggaagag tggcaaccgc ccgaattacc ctgatgcgga
     1381 attgccggat ggcggcgcaa gcgccttatc aggcagcaaa gattaaatcg ctttcgccat
     1441 tttcagattg cagggactca tttgccagtt gaatgtcccc ttgccgcttt catcaagcgt
     1501 aacgttggca attgcggacg tcgtgaacat cggcggcgtt tcgcccggac aaagctcaga
     1561 taccaggtat ccgaccagag gtaagtgaga gatcaccagc accgatccga tctcttcatt
     1621 ggccagcgcc tgaaggtagg cgctgaccag accgacatcg ccacagggcg ttagctccgg
     1681 caggacatcc acctgagtcg gcagattcat acaatcgccg accacatcta acgtctgttc
     1741 ggcccgaaga aacggactca ccagaacacg ttcgatatcc actttttgac ctttcagcca
     1801 gttcgccatc aggcgagact cgtcacaccc acaagaggtc aagggacgaa ccgaatcact
     1861 ggcggcatcg agggctgcgt cgccgtgacg catgataaaa acttgcatat tgcaccgctt
     1921 ttgttaacca gtttcaccaa cacgcttacc acatgcccct attggctgcg gcaaaaatgc
     1981 ggtggccggc attgtgcctt atccattcac cgaatgaaac gctgtttttt acctcaatgg
     2041 cgtaagtata gtcaatcctt gattattatt tcgccactaa ggaggcattc agtgcggatt
     2101 catattctct ttgacctcaa tttccctggt cagtttcccc attcgtccag aaatgctccc
     2161 tgcgctccgc catgcgcact aattgttcac aaggcgcgta acgaggaccg taaagtgcgg
     2221 ccaggcgctg taatgtcgcc accatttcac ccggcccgag agcatccata tagcggaacg
     2281 ggccaccgag aaacggcgga aaaccgatac caaacacggc gccgatatcg ccatcgcgcg
     2341 cgctgcgaat cactttttcg tcgaaacagc gcgccgcttc gttaagcatt aacatgacac
     2401 agcgctctgc cacctgctgc gcagacagtc gactctgccc ttgcacgcca ataagcttat
     2461 aaatagcagg gtcaacctgt tttttgcttt tacgcccttt ttcgccataa agatagaaac
     2521 cgcgaccatt ttttctacct ttgcgatcgt cattcaaaat tgaagcgaca acatttgcag
     2581 gcgcgctaaa acgttctcca tacgccgcct caagcacagg aataatttta gtgcccgtgt
     2641 cgattcctac ctcatccaaa agttggattg gccccaccgg aaaaccaaat tttaccaggg
     2701 cggcgtcaat atgttcgacg cgttcgcctt cagtcagcat ccgaatcgcc tcattgatat
     2761 atggcgcaag aattcggtta acataaaacc cggctttatc actgacgact atcggggttt
     2821 taccctgttt tttcgccagc ttaacggtcg tggcgatggt ctgcgcggaa gtagacgcgt
     2881 gaggaatgac ctcaaccagc ggcatttttt cgaccgggct aaaaaagtgc aatccaatca
     2941 cctgttccgg tctggccgca ttcgccgcaa tatcgccaat cggcagggaa gaagtattgg
     3001 aggcaaaaat ggtgtgagta gcgcaatttt gctccacttc cgccaccatc tgttgtttta
     3061 acggcagatc ttcaaacacc gcttcaatga ccagatcacg atgactgaaa ccacggtaat
     3121 cggtcgaacc tgatatcaac gccaactgtt tatcgcgttc gctggctttg atatggcggc
     3181 ggcgtacttt tgtttcaagc agatcccagc tgtatttcag agcatgattg atcccctgag
     3241 tatttatatc cttaattcgt actggcaaac cgcctttaca ggccgtaacc caggcgatac
     3301 cgccgcccat taacccgccg cctaagatgc ccacgctgtt cagcgggccg ggcggtgcat
     3361 cgctaccggg atcttttttc acctcggtac tggcaaaaaa aacagcgcgc agcgcctgcg
     3421 attgcggcgt catcgccagc tcgccgaaag cgcgcgcttc cgcgtcatag ccgctactgc
     3481 tgccctgcgc cagtccggtt tcaatcacat caatgatccg ctccgtcgcc ggataattac
     3541 cctgcgtttt ttgcgccgtc tttttacgca ccaggcgaaa taacagcgcg cgccccagcg
     3601 gccccgccag gatacgttca cggaccggta aagtccgctg cgccaggcgt tcttttttag
     3661 ccagctcgac agccgcttcc agtaaaatag tttgcggcac cacatcatca accagcccgg
     3721 ctttaagcgc ctgtctggcg cgaagctgtt tacctgtcag gatcatatcc agcgcggtac
     3781 tgacccccac cagccgcgga agacgctgcg ttccgcccga tcccggtaaa agccctaact
     3841 gtacctccgg cagtccgaga acggttttaa cgtcatcggt acagatacgc cgatggcagg
     3901 ccagcgccat ttcaagaccg ccccccagac aggcgccgtg aatggcggcg ataaccggaa
     3961 caggcaacgc ctggatctcc gccatcagtt gttgcccctg acgcgccagc gtttccgctt
     4021 cctgcgcgtt ttggcagtgg cctatcatgt tgatatcagc gccagcaata aagttatctg
     4081 ctttggctga gataaaaaca acgccctgca acgctttatt ttcccggatc tgcttcagga
     4141 tggcgcgtac ctgcgcggca aactccgctt tcagggtgtt caccttttct ccagggacat
     4201 caatagcgac aaccgcgaca ttatccagac gcacgctaag cataaaagct gatgtggtag
     4261 tcattattcc gcctccagaa ccatcgccgc gccaagaccg ccagccgcgc aggccgtgac
     4321 caggccaaaa cctccgcccc gacgccgtaa ttcatgcaac gtttgggtta tcatccgcgc
     4381 gcccgttgcg gcaaaaggat gcccgtaggc gattgagccg ccgagcacgt tgaatttagc
     4441 gtcatccacc tcccctgtcg cctgcgcacg accaaacacc tcacgggcaa atcgttcgct
     4501 gcccagcagt tgtaagttcg ccagagtctg agcggcaaac gcttcatgca tgtcaaaaag
     4561 cgtcagatcg gccatcgtca acccggcccg ctccagcgcc agcggcgttg accaggccgg
     4621 ccccaatagc atgtcctgcc agacatcaat agcggtaaag gcgtagctgc gcagataacc
     4681 aagcgggcgc agccccagct ctttagcgcg ggattcggtc atcagaataa cggcggcagc
     4741 gccgtcggtc agcggtgtac tgttggcggc ggttacggag ccatgttttc ggtcaaaagc
     4801 gggacgcagt ttagcgtagt ccgccagcgt ggaggcaccg cgaatgttgt tgtcttctgc
     4861 aaaggggttt ttatacggcg gcacataggt cgtcatcact tcttccgcca gtttaccctc
     4921 cgcccatgcc tgcgcggcgc gctgatgtga acgatgcgcc agcgcgtcct gctgttcacg
     4981 cgtaatacca tacgttttcg ccatctgttc ggcggtatcg cccatgcgca gaccggtgga
     5041 atactcagca acggcgggag gaacgggcag caggtcgcgt aagcgcagac gagaaaaaag
     5101 cgtcagccgt tggcgggtcg tccgggcttt attgacatca accagtaccc gcgccagggc
     5161 tttactcacg cctattggca gtaccgacga cgaatctgcg ccgccagcga tacccgcgcg
     5221 tatcgtgccg gccatcaggc tttccgccac attcgctacc gcctgaaaac tggtggcgca
     5281 ggcgcggctt acgctatagg catcggtatg aacattcatt cccgtaccca gcacaatttc
     5341 gcgcgcaata ttgggggctt ccggcatttg tactacctga ccaaaaacca gttgctcaat
     5401 ggcatcggct ggaatttcac tgcgcgccag cagctcgcct accaccatct tgccgagatc
     5461 aacagcggga ataccatgaa atgcagtggc ctgacgagcg aagggggttc gtaacccact
     5521 gacaatagca atgcgatcgc cctgacgggt gaccaacggt aaagcctgac gcatagtact
     5581 cccctgtaaa aaaataaatt agtggtctga cctgatcaca gtcttaacca attttttaca
     5641 tttagccaag cagagagaaa agaaagtggg agctaaggca cagtgaaggg aaacgacaaa
     5701 aaaagaaaac gcctccgcca gatgatgacg gaggcgtcgt gaatgaacgg attaacgcag
     5761 gccgagctgg aagatcagcg tttctgcttc gcaggcgaaa acaaaatcaa tatccagacg
     5821 aacgccttcg gattcctcgg taaaggttgg cgtaatttgg caaggttcag actccacgct
     5881 acgcgctttt tcggttaacg ccgccagcgt ctcttcagcc tctgcgcggg tagcgaatac
     5941 gcggctgtat gacgcggtgc aatcggagtt gtccatgatg gttccaacgt ccatacagca
     6001 gcaaaccggg gtttcatcag cactgcattt actcattgta gatttcctct gtatttgcac
     6061 ccagggtgcc agataaacga tggggatatt ttacgctccc ggcattcgcc tctccagtcg
     6121 ttaatggtgg gaaacgcgtt aagtgaccga aatcacactt aaaaatgatc taaaacaaaa
     6181 atcacgcgat cgggtgaccg ttaagcccgc cgattttacc agccagatct cgtttctaag
     6241 atcacaattg aaaaaactta taaacatact tgcaacattc tagctggtca gacctatact
     6301 ctcgccactg gtctgatttc taagtcgtac cgcagaccct acacttcgcg ctcctgttac
     6361 agcatgtaac atagtttgta taaaaataat caatgaggtt atggtcatga gccagaaaac
     6421 cctgtttaca aagtctgctc tcgcagtcgc agtggcaatc atctccaccc aggcctggtc
     6481 tgcgggcttt cagttaaacg aattttcttc ctctggcctt ggccgggcct attcgggtga
     6541 aggcgcaatc gcagatgatg cgggtaacgt tagccgcaac ccggcgttaa ttaccatgtt
     6601 tgaccgcccg acgttttcag cgggcgcagt ttatattgat cctgatgtta atattagcgg
     6661 gacatcgcca tctcgtcgga cgttagatgc ggataacatc gcgccgacgg cctgggtgcc
     6721 gaacgtccat tttgtcgccc cgattaacga ccagtttggc tggggggctt ctattacctc
     6781 taactatggt ctggcgacag agtttaacga cacatacgcc ggcggctcgg ttggcggtac
     6841 gaccgatctt gaaaccatga acctgaattt aagcggcgct tatcgcttaa atgaggcctg
     6901 gagcttcggc ctcggctttg atgcggtata cgcgcgcgcg aaaatcgaac gttttgcggg
     6961 cgatttaggc cagttggtcg cggcacagaa tccggcgctg gcgccggtcg cgggtcagat
     7021 tctcagcgac accaagattg cccacctgaa cggtaatcag tggggctttg gctggaatgc
     7081 cggtatcctt tatgaactgg ataaaaataa ccgctacgcg ctgacctacc gctcggaagt
     7141 caaaattgac tttaaaggca actacagtag cgatcttccc atcgctataa accgatttaa
     7201 cctgcctatc ccaacggcaa ccggcggcgc gacgcagtca ggctacctga cgctgaatct
     7261 gccggaaatg tgggaagtgt ccggttataa ccgtgtggcg ccacagtggg ccatccacta
     7321 tagcctggcc tataccagct ggagtcagtt ccaggaattg aaggcaaaat cgaccgccgg
     7381 cgatacgctc tttgagaagc atgaaggctt taaagacgct tatcgcattg cgttgggtac
     7441 cacctattac tacgatgaca actggacgtt ccgtaccggt atcgccttcg atgacagccc
     7501 ggtaccagcg caaaaccgtt ctatctctat tccggatcag gaccgtttct ggctgagcgc
     7561 cggtacgact tacgccttta acaaagatgc gtctgtcgac gttggcgtct cttatatgca
     7621 tggtcagagc gtgaaaatta atgaaggccc ttatcagttt gaatctgaag ggaaagcctg
     7681 gctgttcggt actaacttta actacgcgtt ctaatctctt tctgaaacgg atcaaaaagg
     7741 tgagcattgc gctcaccttt ttatttactg ccgtttattc cgagtcgatc tctttgagtt
     7801 cgtcctgaat cgcttgcgcg ttcgggtttt cctgcggctt gagttttccg ccattggcga
     7861 taaagtcatg acgctggaag tatgcctcgc gcaccataat ataaggatcg gaagactggc
     7921 gcagcaaacc atcggagtcc agcaactgcg cgcgggtttc tatcccttcg atagtccatt
     7981 ttcctatgga cattggccag gtcaaccacg agagcaccgg atacaaggta tccgccatat
     8041 ccccgccatc ttcacgcagc gtgaagctgc cgtagaacgg aagttgcata taaggcccat
     8101 accccacgcc ataatggccc agtgtactgc caaagcgatg cggttcaacg cgctgcagct
     8161 taggattcgc cattcccgcg acgtcaataa agccgcccat ccctaataag gtattcagga
     8221 agaaacgggt gaaatgcacc ataccctgat aaggatcgcc ctgcaggaaa tagttcacca
     8281 tgatcgccgg ttcttcgagg ttgccggtga aattacttaa accgttacgc gcaggctgtg
     8341 gaacataatc acgccaggcg accgcgaccg gccgaacaac atacgggtcc agcacattaa
     8401 agttgaagtt gtacatggtg cggttaaacc cttcaaatgg gtctgaacgc ccctgctgtt
     8461 ctgtaccgga actcgcacac ccgaccagca gtgtggttcc cagcgccagc gccgacaggc
     8521 gaagcttcat agatgtctcc ctgtgaatta tggctatcgc tgattgccat ccatgacgga
     8581 acgctaccgt atccgcctgt ttaggtgtga gcgattttaa cagcacgtca aacgatgtct
     8641 atatgcgcga tctcattgct ctgagcatag cctggtaacg caacaacatg acggccctat
     8701 tctaacgaaa cagataaaaa cgagcgtgat tatttttatt ttttcggaga atgccccggc
     8761 ctgggtaaat gaaaaaccgc tacgctttat taatatgtgt taatcagcaa ggatcatcat
     8821 ggatagcctt aacgacgata aaattaaccg gcacagcagt gacctggaag ttgaaagcga
     8881 agaaaaacaa agcggtaaag agattgaagt agatgaagat cgtcttcctt cccgcgccat
     8941 ggcgattcat gaacatattc gccaggatgg tgaaaaagag atggaacgcg atgcgatggc
     9001 tttgctctgg tcagccattg ccgcaggact ttctatgggg gcatcactcc tggcgaaagg
     9061 gattttccac gtgcagcttg aaggcgttcc cggcggcttt ttactggaaa atctcggtta
     9121 tacctttggt tttatcattg tcatcatggc ccgccagcaa ttatttactg aaaataccgt
     9181 taccgccgta ttgccggtaa tgcaaaatcc cacgctgagt aacgttggcc tgctgatgcg
     9241 cttatggggc gtagtcttat tgggcaacct tattggcacc ggggttgcgg cgtgggcttt
     9301 tgaatatatg cctatatttg atgaagagac ccgcgatgcc tttgtcaaaa ttggtatgga
     9361 ggtcatgaaa aatagcccaa cggagatgtt tgccaacgcg attatctctg gctggatcat
     9421 cgccacaatg gtatggatgt ttcctgctgc aggcggggca aaaattgtgg tcattatttt
     9481 gatgacctgg cttatcgcgc tgggcgatac cacccatatt gtcgtcggtt ccgttgaaat
     9541 tttgtatttg gttttcaacg gcacgctgcc ctggagcgac tttttctggc ccttcgccct
     9601 tcccacactt gccggaaata tctgcggcgg cacctttatt ttcgcattga tgagccacgc
     9661 gcagatccgc aacgatatga gcaataagcg taaggaagaa gcgaggctac gcggcgagcg
     9721 cctggaacgg gagcggaaaa aagcggaaaa acagcgctga gtggcgacgg tttaaccagt
     9781 caggcggcgc tacacttact ccggcgaata aaaaacgcta tactggcgcc gcgttgtccc
     9841 cttagttaaa tggatataac gagcccctcc taagggctag ttgcaggttc gattcctgca
     9901 ggggacacca tgacctcttt tacccacctc tcacgaatct cagcaaaccc acaccacaca
     9961 aggcgttgca gcgtttttga tgtcttatga tctccagcga atagtgccta taaacataac
    10021 gaaaagcatc cctttaaagt cccctctcgc tgttagaact taaccaaaag ttagcacctt
    10081 cactttccga cagatatagg cccagaactt cttttttgcc ttctagattc agtgccagaa
    10141 cggtataaac cgccttgctc tgataacggc catcctcacg gtttttataa tgaatagcgt
    10201 ccagccagac gacgggataa accttctcca gcgggctctg ttgccactgt tttagttcag
    10261 ggatgacttt atcggtactg cactgacggt ggcggttgaa acgctgaagg cataaagatc
    10321 ttcactctcc cggccgatgt cctgataact catctccagc gcaaacagtc gaatgatatt
    10381 gcgctcgatc tcgtcgtaca gggggtctga agcttcttca ccaattatgg ctcaaaagtg
    10441 ccgttacgat tgcgcggagt tgccagttca aaactgcctg ttggggcttt aatggctttt
    10501 tgccggaacc atttttacgg tttgcctcaa catcctgagc cagatgggaa tcaagttcag
    10561 cagacagggt agagtcggtt aaatacttga ttaatggcgt taagatgcca tctttgcccg
    10621 ttaatgcctg gccggacctg aagggcttta agtgctttgt
//
LOCUS       DAJVSD010000154        10653 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.154, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000154 DAJVSD010000000
VERSION     DAJVSD010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10653
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.154"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(48..1391)
                     /locus_tag="OQP62_003086"
     CDS             complement(48..1391)
                     /locus_tag="OQP62_003086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HCS1722572.1"
                     /translation="MLNSIFIIFCLIAVSAFFSISEISLAASRKIKLKLLADEGSINA
                     QRVLKMQENPGMFFTVVQIGLNAVAILGGIVGDAAFSPAFSALFSHYMSPELSEQLSF
                     ILSFSLVTGLFILFADLTPKRIGMIAPEAVALRIINPMRFCLFVFRPLVWLFNGMANN
                     IFRLFKIPMVRKDDITSDDIYAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTS
                     RESIIWFDLHEDEQSLKKKVAEHPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSMA
                     LNSGVQIRNTLIVPDTLTLSEALESFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMG
                     DLVGQGLEEQIVARDENSWLVDGGTPIDDVMRVLDIDEFPQSGNYETIGGFMMFMLRK
                     IPKRTDSVKFSGYKFEVVDIDNYRIDQLLVTRLDNKSNVPAPKLPDAQGKEDSAA"
     gene            complement(1581..2219)
                     /gene="msrA"
                     /locus_tag="OQP62_003087"
     CDS             complement(1581..2219)
                     /gene="msrA"
                     /locus_tag="OQP62_003087"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HCS1722573.1"
                     /translation="MSLFDKKHLVTQADALPGRNTPMPIATLHAVNEHSMTNVPAGME
                     IAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYD
                     PAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSA
                     MAAAGDHRPITTEIAHATPFYYAEDEHQQYLHKNPYGYCGIGGIGVCLPPDA"
     gene            2432..4165
                     /gene="tamA"
                     /locus_tag="OQP62_003088"
     CDS             2432..4165
                     /gene="tamA"
                     /locus_tag="OQP62_003088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex protein TamA"
                     /protein_id="HCS1722574.1"
                     /translation="MPHIRQLCWVSLLCLSSSAVAANVRLKVEGLSGELEKNVRAQLS
                     TIQSDEVTPDRRFRARVDDAIREGLKALGYYEPTIKFDLLPPPAKGRQVLIARVTPGQ
                     PVLIGGTEVILRGGARTDKDYLALLKTRPAIGTVLNQGDYDNFKKSLTSVSLRKGYFD
                     SEFIKSQLGIALGRHQAFWDIDYDSGERYRFGPVTFEGSQIRDEYLQNLLPFKEGDEY
                     ESKDLAELNRRLSATGWFNSVVVAPEFEKSRKTKILPLKGVVSPRTENTIETGVGYST
                     DVGPRVKASWKKPWMNSYGHSLTTSTSISAPEQVLDFSYKMPLLKNPLEQYYLVQGGF
                     KRTDLNDTEQDSTTLAVSRYWDLSSGWQRAINLRWSFDHFTQGNVTNTTMLFYPGVMI
                     SRTRSRGGLMPTWGDSQRYSVDYSNTAWGSDVDFSVLQAQNVWIRTLYDRHRFVMRAN
                     LGWIETGDFDKVPPDLRFFAGGDRSIRGYKYKSISPKDSDGNLKGASKLATGSLEYQY
                     NVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGVGVRWASPVGPVKLDFAVPVGDKDEHG
                     LQFYIGLGPEL"
     gene            4162..7941
                     /gene="tamB"
                     /locus_tag="OQP62_003089"
     CDS             4162..7941
                     /gene="tamB"
                     /locus_tag="OQP62_003089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex protein TamB"
                     /protein_id="HCS1722575.1"
                     /translation="MSLWKKISLGVLIFIVVLLASVAFLVGTTTGLHLVFGAANRWVP
                     GLDIGQVTGGWRDLSLKNIRYEQPGVAVNAGEIHLAVGLDCLWRSSLCVNDLALKDIN
                     VAIDSKKMPPSEPAQEEEESGPLNLSTPWPITLSRVALNNINIKIDDTTVSVLDFTYG
                     LAWQEKNLTLKPTRLQGLLIALPKVAEVAQEEVVEPKIEKPQPDEKPLGETLKDLFAK
                     PVMPEMTDVHLPLNLNIESFRGEQLRITGDTDLTVRTMLLKVSSIDGNMKLDTLDIDA
                     NQGTVKASGTAQLANNWPVDITLNSTLNIDPLKGEKIKLKVGGALREQLEVRVNLSGP
                     MDVALRAQTRLAEAGLPLNLEVVSQRIAWPLTGDTQFQADDLKLKLSGKMTDYTLSMR
                     TAVKGQDIPPATITLDAKGNERQINLDKLTVAALEGKTELKALVDWQQAISWRGELTL
                     NGINTAKEIPDWPAKLNGVMKTKGSLYGGTWQMDVPELKLTGNVKQNSVNVNGTLKGN
                     SYMQWTIPGLHLALGPNSADIKGELGVKELNLDAAIDAPGLDNALPGLGGMAKGIVKV
                     RGTVEAPQLLADITAHGLRWQELSIAQARIEGDIKSTDQIAGHLNVRVERISQPDVNI
                     NLVTLDAKGSEKQHQLQLRVQGEPVSGQLSLTGSFDREEARWKGTLSDTRFQTPVGPW
                     SLTRAIALDYRNKEQEISIGPHCWLNPNAELCIPQTIDAGAAGRALVNLNRFDLAMLK
                     PFMPDTTQASGVFSGKADVSWDTTQEGLPQGKVTLSGRNVKVTQTVNDAPLPVAFETL
                     NLSADLHNNRAELGWLIRLTNNGQFDGQVQVTDPQGRRNLGGNVNMRNLNLAMVNPVF
                     LRGEKAAGMLNARLRLGGDVQSPQLFGQLQLSALDIDGNFMPFEMQPSQLAMNFSGTR
                     STLAGIVRTQQGQINLNGNADWSQIDNWRARVTAKGSRVRITVPPMVRLDVSPDVVFD
                     ATPSLFTLDGRVDVPWARIVVHDLPESAVGVSSDVVMLNNDLQPETPQTASIPINSNL
                     TVHVGNNVRIDAFGLKARLTGDLKVAQDKQGLGLNGQINIPDGRFRAYGQDLLVRKGE
                     LLFSGPPDQPLLNIEAIRNPDATEDDVIAGVRVTGTADEPKAEIFSDPAMPQAEALSY
                     LLRGQGLDSNQSDSAAMTSMLIGLGVAQSGQVVGKIGETFGVSNLALDTQGVGDSSQV
                     VVSGYVLPGLQVKYGVGIFDSLATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF"
     gene            7944..8288
                     /locus_tag="OQP62_003090"
     CDS             7944..8288
                     /locus_tag="OQP62_003090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase"
                     /protein_id="HCS1722576.1"
                     /translation="MRIFVYGSLRQKQGNSHWMTNAQLLGDYRIDNYQLYSLGHYPGA
                     VPGNGAVYGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVDGLTL
                     IESGDWLDRNQP"
     gene            complement(8342..9550)
                     /locus_tag="OQP62_003091"
     CDS             complement(8342..9550)
                     /locus_tag="OQP62_003091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1722577.1"
                     /translation="MTSMQKWLRIGATLMFGLFVAYLDRSNLSVTLPTITHDLNIDGA
                     TASIVLTIFLIGYAFSNIFGGVFTQRYDPKKIVILMVLIWSIATVFVGFTSSVYVILI
                     CRLVLGITEGIYWPQQSRFASDWFSDKERTQANSIIQYYGQFLALGLGFMILSPLDAA
                     FGWRNVFIITGMIGIVVVVPLYITMLKKQEEAPYYRAPAPTEKTKLTLESLGGTPFLL
                     LIFTYITQGMLFWGITLWIPMVVNSLGYTGFSKALVSSLPYLTAVILAIPISWISDKT
                     QKRVLIASLGLLIPGVMLFLLPFVDAPGFKITLITLAMGYYAASFTPNIWSIIQSNVK
                     PHAIGPASGIINGIGAGGGGTLAGLMVGYFYRTTGSYMQGFMVLGCIVILGGASLLIY
                     GRIRAHHARR"
     gene            complement(9547..>10653)
                     /locus_tag="OQP62_003092"
     CDS             complement(9547..>10653)
                     /locus_tag="OQP62_003092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallo-dependent hydrolase"
                     /protein_id="HCS1722578.1"
                     /translation="INEINKLRIINDIIVDADKYPVTSETRIIHADGMIVTPGLIDYH
                     THVFYDATEGGVRPDMYMPPNGVTTVVDAGSAGTANFDAFYRTVICASKVRIKAFLTV
                     SPPGQIWSQENYDPDNIDENKIHALFRQYRNVLQGLKLKVQTEDIAEYGLKPLTESLR
                     IANDLRCPVAIHSTHPVVPMKELVSLLRRGDIIAHAFHGKGSTILTNEGAVLAEVRHA
                     RERGVIFDAANGRSHFSMNTARRAIANGFLPDIISSDLSTITKLAWPVYALPWILSKY
                     LALGVTLADVINACTHTPAVLMGMAAEIGTLAPGAFADIAIFKLKNRHVEFADIHGET
                     LTGTHVLVPQMTIKSGEILFRQIDFGTRPNGVEK"
BASE COUNT         2633 a         2635 c         2962 g         2423 t
ORIGIN      
        1 aaacggctcc tgaatcagga gccgttgatg tttctggcaa acggatttca ggccgcgctg
       61 tcttctttac cttgcgcatc gggcagtttc ggcgccggta cgttgctttt attgtcgaga
      121 cgcgtcacca gcaactgatc gatacggtag ttgtcgatat ccaccacttc aaatttgtag
      181 ccggaaaact tcaccgaatc agtacgtttt gggatcttgc gcagcataaa catcataaag
      241 ccgccaatgg tttcatagtt gccggattgc ggaaactcat cgatatccag cacgcgcatg
      301 acgtcgtcaa tcggcgtgcc gccgtcaacc agccaggaat tttcatcgcg cgccacaatt
      361 tgctcttcca gtccctggcc gaccaggtca cccattagcg tggtcatcac atcgttcagc
      421 gtaatgatac cgacgaccag cgcgtattca ttcataatga ccgcgaaatc ttcgcccgcc
      481 gttttgaaac tttccagcgc ctcagaaagg gtcagcgtat ccggcacaat caaggtattg
      541 cgaatttgca cgccgctatt cagcgccata ctttggttcg ccagcacgcg gttcagcaga
      601 tctttggaat ctacatagcc gatgatgtgg tcgatatctt cattacacac caaaaatttt
      661 gagtgcggat gttcggctac ctttttcttc aggctttgtt cgtcttcgtg tagatcaaac
      721 cagatgatac tttcgcgcga cgtcatagaa gacggtacgg tgcgggattc aagttcaaac
      781 acattttcaa tcagttcgtg ctcttgcttg cgcaagacgc ccgccagcgc gccggcttcc
      841 accaccgcgt aaatatcatc agaagtaatg tcgtctttcc gcaccattgg aattttgaac
      901 aggcggaaga tgttgtttgc catgccgtta aacagccaca ccagcgggcg aaaaacgaac
      961 aggcagaagc gcatcgggtt gatgatacgc aaagccacag cttctggcgc aatcataccg
     1021 atgcgtttcg gggttaaatc cgcgaacagg ataaacagcc ccgtcaccag cgagaaagag
     1081 agaataaagc tcaactgctc ggagagttct ggcgacatat agtgcgagaa aagggcggaa
     1141 aaggcgggcg aaaatgccgc atcgccgacg ataccgccaa gaatagcgac ggcgttcagg
     1201 ccaatttgca caacggtgaa aaacatgccg ggattttcct gcattttcaa tacgcgttgt
     1261 gcgttgatac tgccttcatc agctaataac ttaagtttaa tcttacgtga tgcggcaagc
     1321 gagatctcgg agatggagaa gaacgcactt acagcgatca ggcagaatat aatgaatata
     1381 ctgtttaaca tatcttatcc ggcgaaacgc cagatcctcg gaagggaagt ttataaatcc
     1441 gtgtggtaac gtttaatgaa aaccggctcg tagcagtgag ccgataagtt cagggctagt
     1501 atagcgtaag ctactgtaaa gtcgccagag ggttcatttt caactccgac aagttccccc
     1561 tacgcctgcg tcgtcacgcg tcacgcgtca ggcggcaggc aaacgccgat cccgccaatc
     1621 ccgcagtaac cgtatggatt tttgtgcaga tactgttggt gttcatcctc ggcgtagtaa
     1681 aacggcgtcg catgggcgat ttccgtggta atagggcgat ggtctccggc ggcggccatt
     1741 gccgactgaa agcgctcgcg actggcgtga gcggcggcat tctgttccgg cgttaaggga
     1801 taaatcgcag aacggtattg cgtaccgtga tcgttaccct gttgcatccc ctgcgtcgga
     1861 tcgtgatttt cccagaaggt ctgtaaaagc tgctcataac ggataacggc aggatcgtac
     1921 actatccgta ccgcttcggc atgaccggtc tgcccggagc agacttcccg gtaggttgga
     1981 ttaggcgtgt aaccgcccgc ataccctgct gcggtgctat atacgccggg caattgccag
     2041 aataaacgtt ctacgcccca gaaacagccc atcgcgaagt aggcgatctc catcccggca
     2101 gggacattgg tcatagagtg ttcatttacc gcatgcagag tggcgattgg catcggggtg
     2161 ttgcgtcctg gtaacgcatc tgcttgagta accagatgtt ttttatcaaa taaactcatg
     2221 aactattctc ccgaaagcgt taattggcgt taaggttgta acgagacgca tctttgcaca
     2281 caataacaac attaatgtat ctggatttaa ccataagaaa tatttgggca gtcgtctgct
     2341 tttcaatcga aattgttgat tttatgttaa gccgcggagc ggtagtgtga ttttttccag
     2401 gggtgggaat aggggatatt caggagaaaa tgtgccacat atccgtcagt tatgttgggt
     2461 tagcttactg tgcctgagca gttctgcggt agccgcaaat gttcgtctga aagtcgaagg
     2521 gctatccgga gagctggaaa aaaacgttcg cgcacagctc tctacgattc agagcgatga
     2581 ggtgacgccg gatcggcgct ttcgcgcccg agttgatgat gcgattcgcg aagggcttaa
     2641 agcgttaggc tattacgaac ccactatcaa attcgacttg cttccaccgc ctgcgaaagg
     2701 acggcaggta ttaatcgcca gggttacgcc cggccagccg gtgttgattg gcggtacaga
     2761 agtcatttta cgcggcggcg cgcgtacgga caaagattat ctggccttac tgaaaacgcg
     2821 tccggcaatc ggcacggtgc tcaaccaggg ggactatgac aattttaaaa agtcgttaac
     2881 cagcgtgtcg ctacgcaaag gctatttcga cagcgaattc attaaaagtc agttgggaat
     2941 tgctctgggc cgtcatcagg cgttttggga tattgattat gatagcggtg agcgctatcg
     3001 cttcgggcct gtcaccttcg aaggttcgca gattcgtgat gaatatttac aaaatctgtt
     3061 gccgtttaaa gagggtgatg agtacgaatc gaaagatttg gcggaactaa accgccggct
     3121 ttccgctacc ggatggttta attctgttgt ggtggcgccg gaatttgaga aatcgcgtaa
     3181 aacaaaaatt ctgccgttaa aaggcgtggt atcaccgcga accgaaaaca cgattgaaac
     3241 cggggtgggg tactccaccg acgtcgggcc gcgcgtgaaa gcgtcgtgga aaaaaccgtg
     3301 gatgaactcc tacggtcata gcctgaccac cagcaccagt atttctgcgc cggaacaggt
     3361 gctggatttt agttataaaa tgccgctgct gaaaaacccg ctggagcaat actatctggt
     3421 acagggcggt tttaaacgta ccgatttgaa tgatacggag caggactcga ccacgcttgc
     3481 cgtgtcgcgt tactgggacc tttccagcgg ttggcagcgg gcgattaacc tgcgctggag
     3541 tttcgaccac tttacccagg ggaacgtcac caataccacc atgctgttct acccgggcgt
     3601 gatgatcagc cgaacccgct cgcgaggggg actgatgcca acctggggcg attcgcagcg
     3661 ctactcggta gactattcga atacggcctg gggctccgac gtggatttct ccgtactgca
     3721 ggcgcaaaac gtctggattc ggactttgta cgatcgccac cgttttgtga tgcgcgccaa
     3781 tttgggctgg atagaaaccg gtgatttcga caaagttccg ccggatttac gtttcttcgc
     3841 cgggggcgac cgcagtattc gcggctataa atacaaatct atttcgccta aagatagcga
     3901 cggcaatctt aaaggcgcct caaaactggc aaccggatcg ctggagtacc agtataacgt
     3961 caccggcaaa tggtgggggg cggtgtttgt cgatagcggc gaggcggtta gtgatattcg
     4021 ccgtagcgat ttcaaaaccg ggaccggggt cggcgtgcgc tgggcgtcgc cggttgggcc
     4081 tgtcaaactc gattttgccg taccggtcgg cgacaaagac gaacacggtt tacagtttta
     4141 tatcggtctg gggcctgaat tatgagttta tggaagaaaa taagcctcgg cgtgttgatt
     4201 ttcattgtgg tgttactggc gagcgttgcg tttctggtcg ggacgacgac ggggctgcat
     4261 ctggtattcg gtgcggcgaa ccgctgggtg ccggggctgg atattgggca ggtcaccggc
     4321 ggctggcggg acttatcgtt aaaaaatatc cgctatgagc agccgggcgt tgcggtaaat
     4381 gcgggcgaaa ttcatctggc cgtcgggctt gattgcctgt ggcgcagtag cctgtgcgtc
     4441 aatgatctgg cgctaaaaga cattaatgtc gctatcgaca gcaaaaaaat gcctccttcc
     4501 gaaccggcgc aagaagagga agaaagcggg ccgctgaacc tctccacgcc ctggcccatc
     4561 acgctgtcgc gcgtggcgct gaataacatc aatatcaaga ttgatgacac taccgtttcg
     4621 gtgctggatt ttacctacgg gctggcatgg caggagaaaa acctgaccct gaaaccgacg
     4681 cggcttcagg gactgctgat cgcgctgccg aaggtcgctg aggtggcgca ggaagaggtg
     4741 gttgaaccca aaatcgagaa acctcaaccg gatgaaaagc cgcttggcga aacgctaaaa
     4801 gatctgtttg caaaaccggt aatgccggag atgaccgatg ttcacctgcc gctcaatctg
     4861 aatatcgagt catttcgcgg cgagcagcta cgcatcaccg gcgataccga tctgacggtg
     4921 cgcacgatgc tgcttaaagt cagcagtatc gacggtaata tgaagctgga tactctggat
     4981 atcgacgcca accagggcac ggtgaaagcc tccggtacgg cgcagctcgc caataactgg
     5041 ccggttgata ttacgctcaa cagtacgctg aatatcgatc cgctaaaggg tgaaaagatc
     5101 aaactcaagg tcggcggcgc gttacgcgaa caactggagg tcagggtgaa cctttccggg
     5161 ccgatggatg tcgcgcttcg cgcccagacg cggctggcgg aggccggttt accgctcaat
     5221 cttgaggtcg tcagccaacg cattgcctgg ccattgacgg gtgataccca gtttcaggct
     5281 gacgatctga agctcaaact gagcggtaag atgaccgact atacgttgtc gatgcgaacc
     5341 gccgtgaaag gacaagatat tccgccggcg accatcacgc tggatgctaa agggaatgag
     5401 cggcagatta atctcgataa actcaccgtc gccgctctgg agggaaaaac cgaactgaaa
     5461 gcgctggtgg actggcagca ggcgattagc tggcgtggcg aactgacgct gaatggcatc
     5521 aataccgcta aagagatccc ggactggccc gcgaaactta acggcgtcat gaaaaccaaa
     5581 ggcagcctct acggcggcac ctggcagatg gatgtcccgg agctcaagct gaccggtaat
     5641 gtgaagcaga acagcgttaa cgtcaacggg acgctaaagg gcaacagcta catgcagtgg
     5701 acgatcccgg ggctgcacct tgcgctgggc ccaaacagcg ccgatataaa aggcgagctt
     5761 ggcgttaagg agctgaatct tgacgccgcc atcgatgcgc cagggctgga taatgcgctg
     5821 ccagggctgg gcggcatggc aaaaggaatc gttaaagtcc gcggtacggt agaagcgccg
     5881 cagctgttgg cggatatcac cgcccacggt ctgcgctggc aggagctgtc tatcgcccag
     5941 gcgcgcatcg agggcgatat taaatccacc gatcagatag cgggccatct caacgttcgc
     6001 gtagagcgga tttcgcagcc cgacgttaac atcaatctgg tgacgcttga cgccaaaggc
     6061 agcgagaagc agcatcagct acagctccgt gttcagggag aaccggtatc cggtcaactc
     6121 tccctgacag gcagttttga tcgcgaggag gcgcgctgga aagggacgtt aagcgacacc
     6181 cgtttccaga cgccagtggg gccatggtcg ttgacccgcg cgattgcgct ggactaccgt
     6241 aataaagaac aggaaatcag tatcgggcca cattgttggc tgaacccgaa cgccgagctg
     6301 tgcatcccgc aaaccattga tgcgggcgcc gcaggacggg cgttggtcaa tctcaaccgc
     6361 tttgatctgg cgatgctgaa gccatttatg cctgatacca ctcaggccag cggggtcttt
     6421 agcgggaaag cggacgtgtc gtgggacacc acccaggagg gattgccgca ggggaaggtc
     6481 acactttccg gtcgtaacgt gaaggtcacg cagaccgtca atgacgcgcc gttaccggtc
     6541 gcgtttgaga cgctgaacct cagcgccgat ctgcacaata atcgcgccga gctgggatgg
     6601 ctgattcgcc tgacgaacaa tggtcaattc gatggccagg tgcaggtaac cgatcctcag
     6661 gggcggcgca atctcggcgg taacgtcaac atgcgcaatc tcaatctggc gatggtcaac
     6721 cctgtctttt tgcgcggcga aaaagcggcg ggaatgttaa acgccaggct acgtctgggc
     6781 ggcgatgtgc aaagcccgca gttgtttggt cagttgcagc ttagcgcgct ggatattgac
     6841 ggtaatttta tgccgtttga gatgcagccg agccagctcg ccatgaactt tagcggtacg
     6901 cgctcgacgc tcgctggtat cgtgcgaaca caacaagggc aaattaacct gaacggtaac
     6961 gccgactgga gccagattga caactggcgc gcgcgggtga cggcgaaagg cagtcgggtg
     7021 cggattaccg ttccgccgat ggtgcgcctg gatgtctcgc cggatgtggt ctttgacgcg
     7081 acgccttcgc tgttcacgtt ggatgggcgt gtggacgttc cgtgggcacg aattgtggtg
     7141 cacgacctgc cggagagcgc ggtcggcgtc tccagcgatg tggttatgct caataatgac
     7201 ctgcaaccag aaacgccgca gacagcatct attcccatca acagtaatct gacggtacat
     7261 gtcggcaaca acgtgcgcat cgacgccttc gggcttaaag cgcgtttgac cggcgatttg
     7321 aaagtcgcgc aggataagca ggggctgggg ctaaatggtc aaatcaatat tcctgacggc
     7381 cgattccgcg cctacggcca ggacctgctt gttcgtaaag gcgagctgct gttctccggc
     7441 ccgccggatc agccgctgct caatatcgaa gcgatccgta accctgacgc caccgaagac
     7501 gatgtcattg cgggcgtgcg cgtcacaggc acagctgatg aacccaaagc ggaaatcttc
     7561 tccgatccgg cgatgccgca ggctgaagcg ctttcttatc tgctgcgtgg gcaggggttg
     7621 gacagcaatc agagtgatag cgcagcaatg acttccatgc ttattggcct gggggttgcg
     7681 caaagtggtc aggttgtggg taaaatcgga gagacattcg gtgtaagtaa tctggcgctg
     7741 gacacgcaag gggtgggcga ttcgtcccag gttgtggtca gcggctatgt actgccgggt
     7801 ctacaggtga agtatggtgt agggatattt gactctctgg cgacgctcac gttacgttat
     7861 cgcctgatgc ctaagctata tctggaagca gtgtctggcg tagatcaggc acttgatttg
     7921 ctctatcagt ttgagtttta gcaatgcgaa tatttgtcta tggcagttta cgacagaaac
     7981 aaggcaacag tcactggatg accaatgccc aattgcttgg cgattaccgt atcgataact
     8041 accagttgta tagtctgggc cactatccag gcgcagttcc gggaaacgga gcggtatacg
     8101 gtgaagttta tcgaattgat aacgccacgc tggccgaact tgatgctttg cgcaccaggg
     8161 gcggtgaata cgcacgccag ttaatccaga cgccttacgg cagcgcatgg atgtatgtat
     8221 atcaacgtcc tgttgatggg ttaactctga ttgaaagcgg tgactggtta gacagaaacc
     8281 agccctgaac tgaacacgcc accctcgggt ggcgttgttt tttacattct ggctgatggc
     8341 gttaacgccg ggcatggtga gctcttattc tgccgtagat caataatgac gcgccgccca
     8401 ggataacaat gcatccgaga accataaatc cctgcatata gctgccggtt gtccggtaaa
     8461 aatagccgac cattaggcct gccaacgtac cgccgccgcc ggcgccgatg ccattaataa
     8521 taccggaggc tgggccaatc gcatggggtt taacgttcga ctggataatc gaccagatat
     8581 tgggggtaaa gctggcggca taataaccca tcgccagggt aatgagcgtg attttaaagc
     8641 ccggcgcatc gacaaatggc aggagaaata acatcacgcc ggggattagt aggcccagtg
     8701 aagcaataag tacacgtttt tgtgtcttat cactgatcca tgagatgggg attgccagta
     8761 taaccgcagt cagataaggc agagaactga ccaatgcttt actgaatccg gtatagccga
     8821 gagaattgac aaccatgggg atccataacg taattcccca gaacaacatc ccttgagtga
     8881 tgtaggtaaa aataaggagt aggaaggggg ttccgcccag cgattccaga gtaagtttag
     8941 ttttctctgt tggcgccggc gcacgataat aaggcgcttc ttcctgtttt ttcagcattg
     9001 ttatataaag tggaaccaca acaacaatgc cgatcatacc agtgataata aaaacatttc
     9061 gccaaccgaa ggcagcatcc agcggggaca aaatcataaa tcccaggcct aatgccagga
     9121 actgtccata atactggata atgctgttcg cctgcgtccg ttctttgtct gaaaaccagt
     9181 cgctggcgaa gcgggactgc tgcggccaat aaatgccttc ggtaatgcca agcaccagcc
     9241 gacaaatcaa aataacgtac actgacgagg taaatccgac aaaaacggtc gcaatcgacc
     9301 agattagcac catcagaatg actatttttt tcggatcgta tcgctgggta aatacgccgc
     9361 caaaaatatt tgaaaaggca tagccaataa gaaatatggt taatacaatg ctggccgttg
     9421 cgccatcaat attcaggtcg tgtgtaatcg taggtaacgt aacggaaaga ttagaacggt
     9481 caagataagc aacaaaaagg ccgaacatta atgtcgcgcc gatccgtagc catttttgca
     9541 ttgaggtcat ttttcaactc cgtttggccg cgtgccaaaa tcaatttgac gaaataatat
     9601 ctcaccggat tttatggtca tttgtggtac cagcacatgc gtccccgtga gcgtttcacc
     9661 atgaatatcg gcaaattcaa catgcctgtt ttttaattta aagatggcga tatcggcaaa
     9721 tgccccaggg gccagcgtac caatttctgc tgccataccc attaaaactg ctggggtatg
     9781 ggtacaggcg ttaatgacat cggcaagcgt gacgccgagt gctaaatatt tcgataaaat
     9841 ccatggtaag gcgtaaacag gccaggcgag tttagtgatg gttgagagat cgctactgat
     9901 gatatccgga agaaagccat tggcgatggc ccggcgtgcc gtgttcattg aaaaatggct
     9961 gcgaccattg gcggcatcaa atataacgcc tcgttctctt gcatgacgga cttcggctaa
    10021 gaccgcgcct tcattagtaa gaatggtgct acctttgccg tgaaacgcat gagcgataat
    10081 atcgccgcgg cgtagcaagg agacaagttc tttcatggga acgacgggat gagtcgagtg
    10141 tattgctacg gggcacctta aatcgttggc aatacgaagg gattcagtca gcggttttaa
    10201 gccatattca gcaatgtcct cagtctgaac cttgagtttt aatccctgaa gaacgttgcg
    10261 atactggcga aacagcgcgt ggatcttatt ttcatcaata ttgtcaggat cataattttc
    10321 ttgtgaccag atttggcccg gcggcgacac ggtcagaaac gctttgattc gaactttgct
    10381 ggcgcaaatc accgttcggt agaaggcatc aaagtttgcc gtaccggcag aacctgcatc
    10441 cacgacggtg gtgacgccat tcggcggcat gtacatatca ggcctgacgc cgccttccgt
    10501 cgcatcataa aaaacatgcg tgtgataatc gataagaccg ggagtgacga tcatgccgtc
    10561 ggcatggata atccgggtct ccgaagttac aggatattta tcggcatcaa cgataatatc
    10621 gttaatgatg cgtaacttgt taatctcatt aat
//
LOCUS       DAJVSD010000155        10587 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.155, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000155 DAJVSD010000000
VERSION     DAJVSD010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10587
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.155"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            19..207
                     /locus_tag="OQP62_003093"
     CDS             19..207
                     /locus_tag="OQP62_003093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017441395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722579.1"
                     /translation="MSFGLIVLLVINMVTIPVVMALIALLCFIIHIPRKSVNCILLCL
                     LACILTIAGLFIAYPVGR"
     gene            336..1613
                     /locus_tag="OQP62_003094"
     CDS             336..1613
                     /locus_tag="OQP62_003094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1963 domain-containing protein"
                     /protein_id="HCS1722580.1"
                     /translation="MDERIPCKNPQCSHFILPATAARTEGYCMPCVQARYRQEQEEYI
                     RKNRKTIDAFSGITNPVEMLKLVHEPREHDPLIEWIPCPIPTDELYKKLSDDESRDMV
                     DYAEELFDSGWQEEAQEIALCLAAFTQANLDNFLRQVINEEELELSSPLPFHRAPPDV
                     RDALLQKVETDDENRDGILCALAWIGDEVVVEHFNRWRQEPPAWSASLHILPHRYAHQ
                     AGWELTENGRRRDLYFTQCTHLVKQAPEQPAVFRAVAEYGENCPHCSLPLINLFEVAP
                     SAVGLSTQGWPGQIRILTCQCCTAYNTVFATVDPQGQPRWYEKNALSTLAVENSSDWI
                     TLPLDVLHPGESRLPLFAAEIFLPTTFSQLGGHPAWVQDTDYPTCPTCAQTMMFLAQL
                     SYEDIEEEEYAEGMLYGFICPSCQTTATSYQQT"
     gene            complement(1813..2865)
                     /gene="eutR"
                     /locus_tag="OQP62_003095"
     CDS             complement(1813..2865)
                     /gene="eutR"
                     /locus_tag="OQP62_003095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator EutR"
                     /protein_id="HCS1722581.1"
                     /translation="MKKTRTANLHHLYHEALPEDVKLTPRVEVDNVHQRRTTDVYEHA
                     LTITAWQQIYDQLHLGKFHGEFTEILLDEIQVFREYTGLALRQSCLVWPNSFWFGIPA
                     TRGEQGFIGAQGLGSAEIATRPGGTEFELSTPDDYTILGVVISEDVISRQATFLHNPE
                     RVLHMLRNQLALEVKEQHKAALWGFVQQALATFSESPETLHQPAVRKVLSDNLLLAMG
                     TMLEEAKPIHSAESISHQGYRRLLSRAREYVLENMSEPLTVLDLCNQLHVSRRTLQNA
                     FHAILGIGPNAWLKRIRLNAVRRELISPWSQSTTVRDAAMQWGFWHLGQFATDYQQLF
                     AEKPSLTLHQRMRQWA"
     gene            complement(2913..3407)
                     /gene="eutK"
                     /locus_tag="OQP62_003096"
     CDS             complement(2913..3407)
                     /gene="eutK"
                     /locus_tag="OQP62_003096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutK"
                     /protein_id="HCS1722582.1"
                     /translation="MINALGLLEVDGMVAAVDAADAMLKAANVRLLSHQVLDPGRLTL
                     VVEGDLAACRAALDAGSAAAQHTGRVISRKEIGRPEEDTQWLIGGFARATTPTEKAPQ
                     VPATPEFAEALLALLASVRQGMTAGEVAAHFGWPLEQARNVLEQLFSDGALRKRSSRY
                     RIKN"
     gene            complement(3420..4079)
                     /gene="eutL"
                     /locus_tag="OQP62_003097"
     CDS             complement(3420..4079)
                     /gene="eutL"
                     /locus_tag="OQP62_003097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutL"
                     /protein_id="HCS1722583.1"
                     /translation="MPALDLIRPSVTAMRVIASVNDGFARELKLPPHIRSLGLITADS
                     DDVTYIAADEATKQAMVEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDA
                     MVASIENGAAFQWANDAENTAFLAHVVSRTGSYLSSTAGIALGDPMAYLVAPPLEATF
                     GIDAAMKSADVQLVTYVPPPSETNYSAAFLTGSQAACKAACNAFTDAVLDIARNPVQR
                     A"
     gene            complement(4089..4985)
                     /gene="eutC"
                     /locus_tag="OQP62_003098"
     CDS             complement(4089..4985)
                     /gene="eutC"
                     /locus_tag="OQP62_003098"
                     /EC_number="4.3.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutC"
                     /protein_id="HCS1722584.1"
                     /translation="MDQKQIEEIVRSVMASMGQDVPQPVAPSTQEGAKPQCAAPTVTE
                     SCALDLGSAEAKAWIGVENPHRADVLTELRRSTAARVCTGRAGPRPRTQALLRFLADH
                     SRSKDTVLKEVPEEWGKAQGLLEVRSEISDKNLYLTRPDMGRRLSPEAIDALKSQCVM
                     NPDVQVVVSDGLSTDAITANYEEILPPLLAGLKQAGLNVGTPFFVRYGRVKIEDQIGE
                     ILGAKVVILLVGERPGLGQSESLSCYAVYSPRVATTVEADRTCISNIHQGGTPPVEAA
                     AVIVDLAKRMLEQKASGINMTR"
     gene            complement(5004..6365)
                     /gene="eutB"
                     /locus_tag="OQP62_003099"
     CDS             complement(5004..6365)
                     /gene="eutB"
                     /locus_tag="OQP62_003099"
                     /EC_number="4.3.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit alpha"
                     /protein_id="HCS1722585.1"
                     /translation="MKLKTTLFGNVYQFKDVKEVLAKANELRSGDVLAGVAAASSQER
                     VAAKQVLSEMTVADIRNNPVIAYEEDCVTRLIQDDVNETAYNRIKNWSISELREYVLS
                     DETSVDDIAFTRKGLTSEVVAAVAKICSNADLIYGGKKMPVIKKANTTIGIPGTFSCR
                     LQPNDTRDDVQSIAAQIYEGLSFGAGDAVIGVNPVTDDVENLTRVLDTVYGVIDKFNI
                     PTQGCVLAHVTTQIEAIRRGAPGGLIFQSICGSEKGLKEFGVELAMLDEARAVGAEFN
                     RIAGENCLYFETGQGSALSAGANFGADQVTMEARNYGLARYYDPFLVNTVVGFIGPEY
                     LYNDRQIIRAGLEDHFMGKLSGISMGCDCCYTNHADADQNLNENLMILLATAGCNYIM
                     GMPLGDDIMLNYQTTAFHDTATVRQLLNLRPSPEFERWLETMGIMANGRLTKRAGDPS
                     LFF"
     gene            complement(6377..7780)
                     /gene="eutA"
                     /locus_tag="OQP62_003100"
     CDS             complement(6377..7780)
                     /gene="eutA"
                     /locus_tag="OQP62_003100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase reactivating factor
                     EutA"
                     /protein_id="HCS1722586.1"
                     /translation="MNTRQLLSVGIDIGTTTTQVIFSRLELVNRAAVSQVPRYEFIKR
                     DISWQSPVFFTPVDKQGGLKEAELKALILAQYQAAGIAPESVDSGAIIITGESAKTRN
                     ARPAVMALSQSLGDFVVASAGPHLESVIAGYGAGAQSLSEQRMCRVLNIDIGGGTSNY
                     ALFDAGKVSGTACLNVGGRLLETDAQGRVVYAHQPGQMIIDEVFGSGTDARALAAAQL
                     GQVARRMADLIVEVITGALSPLAQSLMQTGLLPADITPEVITLSGGVGECYRNQPADP
                     FCFSDIGPLLATALHEHPRLREMNVQFPAQTVRATVIGAGAHTLSLSGSTIWLEDVQL
                     PLRNLPVAIPQDDADLVNAWRQALLQLDLDPQTDAYVLALPSTLPVRYAALLTVINAL
                     TAFVARYPNPHPLLVVAEQDFGKALGMLLRPQLPQLPLAVIDEVVVRAGDYIDIGTPL
                     FGGSVVPVTVKSLAFPS"
     gene            complement(7777..9003)
                     /gene="eutH"
                     /locus_tag="OQP62_003101"
     CDS             complement(7777..9003)
                     /gene="eutH"
                     /locus_tag="OQP62_003101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutH"
                     /protein_id="HCS1722587.1"
                     /translation="MGINEIIMYIMMFFMLIAAVDRILSQFGGSARFLGKFGKSIEES
                     GGQFEEGFMAMGALGLAMVGMTALAPVLAHVLGPVIIPVYEMLGANPSMFAGTLLACD
                     MGGFFLAKELAGGDVAAWLYSGLILGSMMGPTIVFSIPVALGIIEPSDRRYLALGVLA
                     GIVTIPIGCIAGGLIAMYSGVQINGQPVEFTFALILMNMIPVLIVAVLVALGLKFIPE
                     KMINGFQIFAKFLVALITIGLAAAVVKFLLGWELIPGLDPIFMAPGDKPGEVMRAIEV
                     IGSISCVLLGAYPMVLLLTRWFEKPLMNVGKLLNVNNIAAAGMVATLANNIPMFGMMK
                     QMDTRGKVINCAFAVSAAFALVDHLGFAAANMNAMIFPMIVGKLIGGVTAIGVAMMLV
                     PKDDAAQVKTEAEAQS"
     gene            complement(9122..10309)
                     /gene="eutG"
                     /locus_tag="OQP62_003102"
     CDS             complement(9122..10309)
                     /gene="eutG"
                     /locus_tag="OQP62_003102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization ethanol dehydrogenase
                     EutG"
                     /protein_id="HCS1722588.1"
                     /translation="MQAELQTALFQAFNTLNLQRVKTFSVPPVTLCGLGALGACGQEA
                     QARGVSHLFVMVDSFLHQAGMTAPLARSLAMKGVAMTVWPCPPGEPCITDVCAAVAQL
                     REAACDGVVAFGGGSVLDAAKAVALLVTNPDQTLSAMTERSTLRPRLPLIAVPTTAGT
                     GSETTNVTVIIDAVSGRKQVLAHASLMPDVAILDAAVTEGVPPNVTAMTGIDALTHAI
                     EAYSALNATPFTDSLAIGAIAMIGKSLPKAVGYGQDLAARENMLLASCMAGMAFSSAG
                     LGLCHAMAHQPGAALHIPHGQANAMLLPTVMGFNRMVCRERFSQIGRALTNKKSDDRD
                     AIAAVCELIAEVGQSKRLADAGAKPEHYSAWAQAALEDICLRSNPRTATQAQIIDLYA
                     AAG"
     gene            complement(10299..>10587)
                     /locus_tag="OQP62_003103"
     CDS             complement(10299..>10587)
                     /locus_tag="OQP62_003103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ethanolamine utilization protein EutJ"
                     /protein_id="HCS1722589.1"
                     /translation="LEEAEQYKRSNAQEIWPVVKPVYEKMAEIVARHIEGQGIADLWL
                     AGGSCMQPGVEALFRQRFPELQVHLPQHSLFMTPLAIANSGRAKAKGLYAS"
BASE COUNT         2249 a         3291 c         2836 g         2211 t
ORIGIN      
        1 atccctcata gcggaggggt gagcttcggt ctgatcgtgc ttctggttat caatatggtg
       61 accatccctg tggtcatggc cctgatagca ttactctgct ttattattca tattccgcgt
      121 aaaagcgtta actgcatctt gctatgccta ctggcatgta ttttgacgat agccggtttg
      181 tttatcgcct atccggttgg ccgttgaata aaagcaggct cgtagaaata aacgagttca
      241 ttgtagataa agaattcgga taaccgcccg ctgccgttat cattagtaaa acagtacagt
      301 aaacactcgt agaatttgca gtggagcact accgcatgga cgagcgtatt ccttgtaaaa
      361 acccgcaatg ctcacatttc atcctgccag caacggctgc ccgcacggag ggctattgca
      421 tgccctgcgt ccaggcgcgc tatcggcaag agcaggaaga atatatccgg aaaaacagaa
      481 aaacgatcga cgcgttcagt ggcattacca accctgttga aatgcttaaa ctcgttcatg
      541 aaccccggga acacgatccg ttaatcgagt ggattccctg ccccattccg accgatgagc
      601 tttacaaaaa gctctccgat gatgaaagcc gcgacatggt cgattatgca gaagaattat
      661 ttgattccgg atggcaggag gaagctcagg aaattgcgct gtgcctggcg gcatttaccc
      721 aggccaatct ggataatttc ctgcgccaag taataaatga agaggaactg gagctctctt
      781 cacccctacc ttttcaccgt gcgccgcctg acgtacgcga cgcgcttttg cagaaggttg
      841 aaaccgatga cgaaaaccgt gatggcattc tttgcgccct ggcctggatt ggcgatgagg
      901 ttgtcgttga gcattttaac cgctggcgcc aggaaccacc tgcgtggagt gcttcacttc
      961 atatcctccc tcatcgctat gctcaccagg cgggatggga gctcactgaa aatggccgca
     1021 ggcgcgatct ttactttacg caatgtaccc atctggtaaa acaggcacct gaacagccgg
     1081 ccgtttttcg cgccgttgca gaatatggtg aaaactgccc acactgttcc ctgccgctaa
     1141 tcaatctgtt tgaggttgcg ccgagcgccg tcggcctaag cacgcagggt tggcccggtc
     1201 aaattcgtat tctgacctgt cagtgttgta cggcatataa caccgttttc gccaccgtcg
     1261 atccacaagg ccagccgcga tggtacgaaa aaaatgcgct ctcgacgctg gcggtggaga
     1321 attcctctga ctggataacg ctaccgcttg atgttctgca ccccggggaa tcccgtttgc
     1381 cgctattcgc tgctgaaata tttttaccca ccaccttctc acagctcggc ggccatcccg
     1441 catgggttca ggatacagac tatcccacgt gcccaacgtg cgcgcaaacg atgatgtttc
     1501 ttgcgcagct aagctatgaa gatatcgagg aagaggaata tgcggaagga atgctttacg
     1561 ggtttatctg cccctcctgc caaacaacgg caacgtctta tcagcaaaca taaacgctca
     1621 tcctcatgat ctgatgacaa aactgttttg cacgttgtgc gcgcgcttcc ccggaggcgg
     1681 cgctggcgcg ccttgtccgg gctaccaacc acaaacagca gcgaatccgt aggcccggta
     1741 aggcgccagc cgccaccggg caattcccga cacgcgcacg ttatcagcaa ccggagagcc
     1801 tacccatcaa tatcaagccc attgccgcat ccgttgatgc agcgtcaacg acggtttttc
     1861 ggcaaataat tgctgataat cggtggcaaa ctgccccaga tgccagaatc cccactgcat
     1921 cgcggcatct ctgaccgtgg tgctctgcga ccacgggcta atcaactccc ggcgcactgc
     1981 attgaggcga atacgtttca gccacgcatt ggggccaatg cccaaaatgg cgtgaaacgc
     2041 attttgcagc gtgcgacggc ttacgtgtag ctggttacat aagtcgagca ccgtcagcgg
     2101 ctccgacata ttttccagca catattcccg cgcccgcgac agtagcctac gatatccctg
     2161 atggctgatg ctttcggcgc tatgaatcgg cttcgcctct tccagcatcg tgcccatcgc
     2221 cagcaacaaa ttatcactca agaccttacg caccgcaggt tgatgcaggg tttcaggact
     2281 ctcgctaaag gtggccagcg cctgctgcac aaagccccac agcgccgctt tatgctgctc
     2341 ttttacctcc agcgctaact ggttacgcag catatgcagc accctttccg ggttatgcaa
     2401 aaacgtggcc tgacgggaaa taacatcttc cgagataacg acgcccagaa tggtgtaatc
     2461 atccggcgtg ctcagttcaa actcggtgcc tcccggtcgg gtggcaatct cggcgctgcc
     2521 gagcccctgc gcgccaataa atccctgttc gccgcgcgtc gccggaatac caaaccagaa
     2581 agagtttggc caaaccagac acgactgacg cagcgccagg ccggtgtatt cacggaacac
     2641 ctgaatctca tcaagcagga tttccgtgaa ctcgccatga aatttaccca ggtgtaactg
     2701 atcgtagatc tgctgccagg cggtgatagt cagagcatgt tcatagacat ccgtcgtccg
     2761 tcgctgatga acattgtcca cctcgactct gggcgtaagt ttaacgtctt cgggtaacgc
     2821 ttcatgataa agatggtgca aattcgctgt acgggtcttt ttcatgatct tctatgccgg
     2881 acgcccgcca ggacgcccgg ccctccgaca gattaatttt tgatgcgata gcgactactg
     2941 cgtttacgca acgctccgtc agaaaagagt tgttccagca cgtttctggc ctgctccagc
     3001 ggccagccaa aatgcgcggc cacctctccc gccgtcattc cctggcgtac tgatgccagc
     3061 agcgccagta acgcttcagc gaactcaggc gttgcgggta cctggggcgc tttctcagtc
     3121 ggcgttgtcg cacgcgcaaa cccgccaatc agccactggg tgtcctcttc cggacgacca
     3181 atttctttgc gactaatcac acggcctgtg tgctgcgcgg cggcgcttcc ggcatctagc
     3241 gccgcacgac acgccgccag atcgccctcc accaccagcg tgagcctgcc agggtcgagc
     3301 acttggtgac tgagcaaacg cacgttggcc gctttcagca tggcatccgc cgcatcgacg
     3361 gcggcgacca ttccgtccac ttccagtaat cccagggcat tgatcattgg cagcctccgt
     3421 tacgcacgct ggacagggtt acgggcgata tccagcacgg cgtcggtaaa ggcgttgcag
     3481 gcggctttac acgcggcctg gcttcccgtt aaaaacgcgg ccgaatagtt ggtttccgac
     3541 ggcggcggca cgtaagtcac cagttgaacg tcagcggatt tcatcgccgc gtcaatgccg
     3601 aatgtcgctt ccagcggcgg cgccaccagg taggccattg gatcgcccag cgcgatacct
     3661 gcggtagacg agaggtacga gccggtacgc gaaaccacat gcgccaggaa cgcggtattt
     3721 tccgcatcgt tcgcccactg gaacgccgcg ccgttttcaa tactggcgac catcgcatcc
     3781 agaccggcgc gcacttccgc cgggttcggt ccgcccagca taatcaacac ttcaccggcg
     3841 gtaggcgacg gcccgtgagc cgccccggca tagagggagc ggccatagac tacttccacc
     3901 atcgcctgtt tggtcgcttc gtcagcggca atataggtca catcatcaga atctgccgtg
     3961 atgagtccga gactacgtat atgtggcggt aatttaagtt cccgcgcaaa gccgtcattc
     4021 acggaggcaa tcacgcgcat ggcagtcact gaaggtcgaa tcaaatctaa tgcaggcatg
     4081 atgtctcctt aacgggtcat gttgatgccg gacgctttct gctccagcat ccgtttggcc
     4141 aaatccacaa tcacggcggc agcttctact ggcggcgtcc ccccctgatg aatgtttgaa
     4201 atacaggttc tgtcggcctc gacggtggtc gccacgcgcg gggaatagac ggcgtagcag
     4261 gagaggcttt ccgactgccc cagccccgga cgttcgccca ccagcaggat gacgaccttc
     4321 gcgccgagaa tttcgccaat ctgatcttca atcttcacgc ggccatagcg cacaaagaac
     4381 ggcgtgccga cgttcagccc ggcctgcttc agaccggcaa gcagcggcgg caggatctct
     4441 tcatagttgg cggtgatcgc atccgtagag aggccatcgg agaccactac ctgcacatcc
     4501 gggttcatca cgcactgcga cttcagcgcg tcaatggctt ccgggctcag gcgacgcccc
     4561 atatccgggc gcgtcaggta caggtttttg tcgctgatct ccgaacgtac ttccagcagc
     4621 ccttgcgctt tgccccactc ttccggcact tctttgagca cggtgtcttt cgaacgggag
     4681 tgatccgcca ggaagcgcaa cagcgcctgg gtgcgcggac gcggcccggc acgacccgta
     4741 cagacgcgtg ccgcagtact gcgacgcagt tcggtcagca cgtccgcacg atgcggattc
     4801 tcgacgccaa tccaggcttt tgcctctgcg gaacctaaat ccagcgcgca gctttcggtc
     4861 accgtcggcg cggcgcactg cggctttgcg ccttcctgcg ttgacggcgc gacgggctgc
     4921 ggtacgtcct gtcccattga cgccatcacg ctacgtacaa tttcttcaat ctgtttttga
     4981 tccatggtgt tatccccgcg tcatcagaag aacagtgacg gatcgcccgc ccgtttggtc
     5041 agacgaccgt ttgccataat gcccatcgtt tccagccagc gttcaaactc cggcgacggc
     5101 cgtaaattca gcaactgacg gacggtggcg gtatcgtgga aagcggtagt ctggtagttg
     5161 agcatgatgt cgtcgccgag cggcatcccc atgatgtagt tacagccggc agtggcgagc
     5221 agaatcatca ggttttcgtt aaggttctgg tcggcgtcgg catggttggt atagcagcag
     5281 tcgcagccca tcgagatgcc gctcagcttg cccataaagt gatcttcgag accggcgcgg
     5341 ataatctgcc tgtcgttgta gagatactcc ggcccgataa agcccaccac ggtgttcacc
     5401 aggaacggat cgtagtagcg agccagcccg tagttacgcg cttccatcgt cacctggtcg
     5461 gcaccaaagt tcgcaccagc cgacagcgcc gagccctgtc cggtttcaaa gtacaggcag
     5521 ttttccccgg cgatgcggtt gaactccgcc cccactgccc gcgcttcgtc gagcattgcc
     5581 agctcgacac cgaactcttt taagcccttc tcgctgccgc aaatgctctg gaaaatcagt
     5641 ccgcctggcg cgccgcgacg aatcgcttca atctgggtgg tgacgtgcgc cagcacgcag
     5701 ccctgggtcg gaatattgaa tttatcgata acgccgtaaa cggtgtcgag cacgcgggtc
     5761 aggttctcca cgtcatcggt caccgggtta acgccgatca ccgcatcgcc tgcgccgaaa
     5821 gaaagccctt cgtagatttg cgcggcgata ctctgcacat cgtcacgggt atcgttcggc
     5881 tgcaaacggc agctaaaggt gcccggaata ccgatggtgg tattggcttt tttgatcacc
     5941 ggcattttct taccgccgta gatcaggtcg gcgttggagc agattttcgc cactgccgcc
     6001 accacttcgg aggtcaggcc tttgcgggta aacgcgatgt cgtccacgga ggtttcatcg
     6061 ctcagtacgt attcgcgcag ttcgctgatg ctccagtttt taatccgatt ataggccgtt
     6121 tcgttgacgt catcctgaat caggcgcgtc acgcagtcct cttcataggc aatcaccgga
     6181 ttgttgcgga tatccgccac cgtcatttcc gacagtacct gttttgccgc tacgcgctcc
     6241 tgcgaacttg ccgcggcaac cccggccagc acatcccccg aacgcagttc gttggcttta
     6301 gccagtacct cttttacatc cttaaactga taaacattgc cgaacaatgt ggtctttagt
     6361 ttcataagtc gttccctcag gaaggaaatg cgagtgattt caccgtcacc ggcacaaccg
     6421 atccgccaaa aagaggcgta ccaatgtcga tatagtctcc cgcccgcacg accacctcat
     6481 cgatgaccgc cagcggaagt tgcggtaact gtgggcgcaa taacatgccc agcgctttac
     6541 caaaatcctg ctcggccacc accagcaggg gatgtggatt gggataacgc gcgacaaaag
     6601 ccgtcagcgc gttgatgacc gtgagtaatg cggcgtaacg caccggaagc gtggagggaa
     6661 gcgccagcac gtaagcgtcg gtttgcgggt cgagatcaag ctggagaagc gcctgccgcc
     6721 aggcgttcac caaatcggcg tcatcctgcg ggatcgccac cggcaggttg cgcagcggca
     6781 gttggacgtc ttccagccag atagtactgc cggaaagcga gagcgtatgg gcccccgcgc
     6841 caatcaccgt ggcgcgtacg gtttgcgccg gaaactgcac gttcatctcg cgcagacgcg
     6901 ggtgctcatg cagcgcggtc gccagcagcg gcccgatatc agaaaagcag aacggatcgg
     6961 caggttggtt gcggtagcat tcacctactc caccggaaag ggtgatcacc tccggcgtaa
     7021 tatcggcggg cagcagcccg gtttgcatca gcgattgcgc cagcggcgag agcgcgccag
     7081 tgataacctc gacgatgaga tccgccatcc gccgcgccac ctgccccaac tgtgcggcag
     7141 ctaaggcgcg agcatcagta cccgaaccga acacctcatc gataatcatc tgccccggct
     7201 gatgggcata aaccacgcgc ccctgagcgt cggtttccag caggcgacca ccgacgttaa
     7261 ggcaggcggt gccgctgact tttcccgcgt caaacagcgc gtagttagac gtgccgccgc
     7321 cgatatcaat attcagcacc cggcacatcc gctgctcaga caggctttgc gccccggcgc
     7381 cgtaaccggc aatgaccgat tccagatgcg gcccggcgct ggcgaccaca aagtcgccca
     7441 gcgactgcga gagcgccatg accgccggac gggcgttgcg ggttttggcg ctttcgccgg
     7501 tgataatgat agcccctgag tccaccgatt caggcgcgat gcctgcggcc tgatactgag
     7561 ccagaatcag cgctttaagt tctgcctctt tcagaccgcc ctgcttatcc acgggcgtaa
     7621 agaagaccgg gctttgccag ctaatgtcgc gtttgatgaa ttcgtagcgc ggcacctgcg
     7681 acaccgccgc acggttaacc aactccaggc gcgagaagat cacctgcgtg gtggtggtgc
     7741 cgatatcgat accgacgctc agtagctggc gagtgttcac gattgcgcct ccgcttcggt
     7801 tttcacctgg gcggcgtcat ctttcggcac cagcatcatc gccacgccaa tcgccgtcac
     7861 gccgccgatc agcttgccga caatcatcgg gaagatcatg gcgttcatgt tggcagcggc
     7921 gaagcctaaa tggtcgacca gcgcgaacgc cgcagagacg gcaaatgcgc agttaatcac
     7981 tttgccgcgg gtatccatct gcttcatcat gccgaacatg gggatattgt tcgccagggt
     8041 cgctaccatg cctgccgccg caatattatt tacgttcagc agcttaccga cattcatcaa
     8101 cggtttttca aaccagcggg tcagtaacag caccatcgga tacgcgccga gcagcacgca
     8161 ggagatagag ccgatcactt caatggcgcg catcacttcg ccgggtttgt cgcctggcgc
     8221 cataaagatc gggtcgagcc ccggaatcaa ctcccagccc aacaggaatt taaccaccgc
     8281 agccgccaga ccgatggtga tcagcgccac cagaaatttg gcgaaaatct ggaaaccgtt
     8341 gatcattttt tccgggatga acttcagccc cagcgctacc agcaccgcga cgatcaatac
     8401 cgggatcatg ttcatcagga tcagcgcgaa ggtaaactcc actggctgac cattgatctg
     8461 cacacctgag tacatggcga tcaacccccc cgcaatgcag ccaatgggaa tggtgacgat
     8521 acccgccagt acgccaagcg ccaggtagcg gcggtcagac ggttcgataa tgccgagcgc
     8581 caccggaatg gagaacacaa tggtcggccc catcatcgac ccaagtatta accctgagta
     8641 tagccacgcc gcgacatcac cgccggccag ctctttggcg aggaagaatc cgcccatatc
     8701 acaagccagt agcgtacccg cgaacatgga tgggttcgcg cccagcattt cgtataccgg
     8761 gataataacc ggccccagta catgcgccag caccggcgcc agcgcggtca taccaaccat
     8821 cgccagtccc aacgcgccca tcgccataaa gccctcttca aactggccgc cagactcctc
     8881 gatactcttg ccaaatttac cgaggaagcg cgccgacccg ccgaactgcg acaggatcct
     8941 gtccacggcg gcaatcagca taaagaacat catgatgtac atgatgattt cgttaattcc
     9001 catagcccct actccctgtc atttttgatt tgtaagccgg ataagacgtt tacgtcgcct
     9061 ccggcattaa cgccgtgtta ttgccggatg gcgatgcgag caccttatcc ggcctacagc
     9121 attacccggc agccgcgtac aggtcgataa tctgtgcctg tgtggcggtg cgtgggttac
     9181 tgcgcagaca aatatcctcc agcgcggctt gcgcccacgc gctgtagtgt tcgggtttgg
     9241 cgccagcgtc agccagccgt ttgctctgcc ccacttcggc aatcagctcg cacaccgccg
     9301 caatcgcatc gcgatcgtcc gatttcttat tggttaacgc ccgaccgatt tgactgaagc
     9361 gctcgcggca taccatccgg ttaaagccca tgactgtcgg cagcagcatg gcgttggcct
     9421 ggccgtgcgg aatatgcagc gccgcccctg gctggtgcgc catcgcatga cacagcccca
     9481 gaccggcgct ggaaaaggcc attcccgcca tacaggaggc cagcaacata ttttcacgcg
     9541 ccgccagatc ctgcccatag ccgacggcct tcggcagcga tttgccaatc atcgctatcg
     9601 cgccaatcgc caggctgtcg gtaaacggcg tggcgttgag cgcgctgtag gcctcaatcg
     9661 catgcgtcag cgcatcgata ccggtcatcg ccgtcacatt tggcggaacg ccttcggtca
     9721 cggcagcatc aagaatcgcc acatccggca ttagtgacgc gtgtgccagc acctgcttgc
     9781 gcccgctgac cgcgtcgata atcaccgtca cgttggtggt ttctgaaccg gttccggcgg
     9841 tggtcggcac cgcaatcagc ggcagacgcg ggcgtaatgt actgcgctcg gtcatggcgc
     9901 tcagcgtctg gtcagggtta gtcaccagca gggcgaccgc tttcgccgcg tccaacaccg
     9961 aaccgccgcc aaaggccact acgccgtcgc acgccgcctc acgcagttgc gccaccgccg
    10021 cgcagacatc ggtgatgcac ggctcgcctg gcggacacgg ccagaccgtc atcgccacgc
    10081 ctttcatcgc caggctgcgt gccagcggcg cggtcattcc cgcctgatgc aggaagctgt
    10141 cgaccatcac aaacaaatgg cttacgcccc gcgcttgcgc ttcctgcccg caggcgccga
    10201 gcgccccaag cccgcacagc gtgaccggcg gtacgctgaa cgttttcacc cgttgcagat
    10261 tcagggtgtt gaatgcctga aacagcgccg tctgtagttc agcttgcata gagtcccttc
    10321 gctttcgctc tcccgctgtt agctatcgcc agcggggtca taaacaggct gtgctgcggt
    10381 aaatgcacct gtaactccgg gaaacgctgg cgaaataacg cctccacgcc cggctgcata
    10441 caggaaccgc ccgccagcca taaatcagca attccttgcc cttcaatgtg gcgagcaacg
    10501 atctccgcca tcttttcgta caccggcttc actaccggcc aaatctcctg cgcattgctg
    10561 cgcttgtact gttccgcctc ttctagg
//
LOCUS       DAJVSD010000156        10450 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.156, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000156 DAJVSD010000000
VERSION     DAJVSD010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10450
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.156"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            29..1303
                     /locus_tag="OQP62_003104"
                     /pseudo
     CDS             29..1303
                     /locus_tag="OQP62_003104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122303.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
     gene            1517..3229
                     /locus_tag="OQP62_003105"
                     /pseudo
     CDS             1517..3229
                     /locus_tag="OQP62_003105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460752.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalase"
     gene            complement(3292..3546)
                     /locus_tag="OQP62_003106"
     CDS             complement(3292..3546)
                     /locus_tag="OQP62_003106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HCS1722590.1"
                     /translation="MGIIAWIVFGLIAGVIAKLLMPGRDGGGFILTCILGIVGAVVGG
                     WLATMFGIGGSISGFNLHSFLVAVVGAIVVLVIFRLLRRG"
     gene            3715..4449
                     /gene="ycgR"
                     /locus_tag="OQP62_003107"
     CDS             3715..4449
                     /gene="ycgR"
                     /locus_tag="OQP62_003107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar brake protein YcgR"
                     /protein_id="HCS1722591.1"
                     /translation="MSGYNEQFLKKNPLAILGVLRDLNKNQVPLRISWAHGQFISKIL
                     AVAPEKLIVDYGSQEYKNSAVLRAGQVAIIAETQGAKVEFTLPQLVTGEYQRLPAFIT
                     PLPSSLWFVQRREYFRIGAPLYPPYYGVTTLPDTRTLRFRLFDLSLGGMGALLESAIP
                     DGLIEGARFSQVELNMGPWGILHVDAQLLAISERKVIDGKNETITTPRLSFRFLNVSP
                     AVERELQRIIFSLERDARERANKVRE"
     gene            complement(4463..5074)
                     /gene="emtA"
                     /locus_tag="OQP62_003108"
     CDS             complement(4463..5074)
                     /gene="emtA"
                     /locus_tag="OQP62_003108"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     EmtA"
                     /protein_id="HCS1722592.1"
                     /translation="MKLRWFAFLVVILAGCSSKQDYRNPPWNAEVPVKRAMQWMPISE
                     KAGAAWGVDPHLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWRGEP
                     TTSELKNPERNISMGAAYLSILENGPLAGIKDPQVMQYALVVSYANGAGALLRTFSSD
                     RKKAIEKINDLDADEFFEHVVDNHPAPQAPRYIWKLQQALDAM"
     gene            5245..6159
                     /gene="ldcA"
                     /locus_tag="OQP62_003109"
     CDS             5245..6159
                     /gene="ldcA"
                     /locus_tag="OQP62_003109"
                     /EC_number="3.4.17.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="muramoyltetrapeptide carboxypeptidase"
                     /protein_id="HCS1722593.1"
                     /translation="MSLFHLIAPSGYCINQQAALRGVQRLTDAGHQVENDEVIRRRYQ
                     RFAGTDAERLADVNSLASLTSPDTIVMPVRGGYGASRLLDRIDWQALASRQQRDPLLI
                     CGHSDFTAIQAGLLAQANVITFSGPMLAANFGAETLNTFTEQHFWLALRKAQFTVEWQ
                     GDGPQCDVQGTLWGGNLAMLISLIGTPWMPTIDKGILVLEDVNEHPFRVERMLLQLEY
                     AGILNRQSAIVLGSFSGAAPNEYDAGYSLESVYAFLRSRLSVPLITGLDFGHEQRTVT
                     LPIGANATLKNTRQGTQLTLSGHPTLQL"
     gene            6256..7989
                     /locus_tag="OQP62_003110"
     CDS             6256..7989
                     /locus_tag="OQP62_003110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium/proton antiporter"
                     /protein_id="HCS1722594.1"
                     /translation="MDAATIISLFILGSILVTSSILLSSFSSRLGIPILVIFLAIGML
                     AGVDGIGGIPFDNYPFAYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLI
                     TSGLTGMMAAWLFHLDLIEGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGS
                     NDPMAVFLTITLIEMIQKHETGLDWMFAVHIIQQFGLGIVFGLGGGYLLQQMINRISL
                     PSGLYPMLALSGGILIFALTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAW
                     LAQIAMFLVLGLLVTPSDLWPIAVPALILSIWMIFFARPLSVFTGLLPFRGFNLRERI
                     FISWVGLRGAVPIILAVFPMMAGLENARLFFNVAFFVVLVSLLLQGTSLSWAAKRAKV
                     VVPPVGWPVSRVGLDIHPDNPWEQFIYQLSADKWCVGAALRDLHMPNETRIAALFRNN
                     ELFHPTGSTRLQEGDVLCVIGRERDLPALGKLFSQSPPVSLDQRFFGDFILEANAKFA
                     DVALIYGLEEGTEYRDKQQTLGEIIQQLLGAAPVVGDQVEFGGMIWTVAEKEDNVVRK
                     IGVRVAEDEAE"
     gene            complement(8051..9121)
                     /gene="dadX"
                     /locus_tag="OQP62_003111"
     CDS             complement(8051..9121)
                     /gene="dadX"
                     /locus_tag="OQP62_003111"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolic alanine racemase DadX"
                     /protein_id="HCS1722595.1"
                     /translation="MTRPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIE
                     RVWSALGATDGFAMLNLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHS
                     NWQLKALQNARLNAPLDIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHF
                     AQADHPEGIGEAMRRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPS
                     GQWRDIADTGLKPVMTLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGY
                     PRHAPTGTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVAS
                     AAGTLGYGLLCAVAPRVPFVTT"
     gene            complement(9135..10433)
                     /locus_tag="OQP62_003112"
     CDS             complement(9135..10433)
                     /locus_tag="OQP62_003112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HCS1722596.1"
                     /translation="MRVVILGSGVVGVTSAWYLSQAGHDVTVIDRESGPAQETSAANA
                     GQISPGYAAPWAAPGVPLKAIKWMFQRHAPLAVRLDGTPFQLKWMWQMLRNCDTRHYM
                     ENKGRMVRLAEYSRDCLKTLRAATGIEYEGRQGGTLQLFRTAQQYENATRDIAVLEDA
                     GVPYQLLEASRLAEVEPALAEVAHKLTGGLRLPNDETGDCQLFTQRLARMAEQAGVTF
                     RFNTPVEKLLYENDQIYGVKCADEIIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYS
                     LTIPIVEPDGAPVSTILDETYKIAITRFDKRIRVGGMAEIVGFNTDLLQPRRETLEMV
                     VRDLFPRGGHIEQATFWTGLRPMTPDGTPVVGRTRYKNLWLNTGHGTLGWTMACGSGQ
                     LLSDILLGRTPAIPYDDLSVARYRSDFTPTRPQRLHSAHN"
BASE COUNT         2279 a         2924 c         2812 g         2435 t
ORIGIN      
        1 catattactt ttatcactaa ggtttatcat ggataagtta tcttacgctt cagatagcag
       61 cacatctgcc tggaatacct acctgcaaca aatcgagcgt gtggcccctt atctgggcga
      121 gttatccccc taggtggata ctctgcgcca cccaaaacgc gctctgatcg tcgatattcc
      181 ggtacaaatg gatgatggca ctattcgtca tttcgaagga tatcgcgtgc agcacaacct
      241 ctcccgaggt ccgggtaaag gcggtgttcg ctaccatcct gacgttgatc tcaatgaagt
      301 gatggccctg tcagcatgga tgaccatcaa atgtgccgcg ctgaatctgc cgtacggcgg
      361 cgccaaaggc ggcatccgcg tcgatccgtt ctcgctgtcg gaaggtgaac tggagcgttt
      421 gacccgccgc tataccagcg agatcggcat tatcatcggg ccgcagaaag atattcctgc
      481 gccggatgtc ggcaccaacg gtaaagtgat ggcctggatg atggatacgt attccatgaa
      541 tcatggcacg acggtcactg gcgtcgtcac cggtaagcct atccatcttg gcggttcgct
      601 gggtcgtgaa aaggcgacgg ggcgcggcgt tttcgtcagc gggctggaag ccgcgcgtcg
      661 ggcgaatatc gccgttgaag gcgctcgcgt tgcggttcag ggttttggta acgtcggcag
      721 cgaagccgcg cgtctgtttg caggcgctgg cgcccgtgtc gtggcgattc aggatcatac
      781 cgcgacgctg tttaacgcca ccggtattga catgaaggcg ctcacggcat ggcagacaga
      841 acacaaacag atagccggtt tcccgggcgc ggaaactatc gccagcgatg cgttctggcg
      901 tctggagatg gatattctga tcccggcggc gcttgaaggc cagataactc gtcagcgcgc
      961 ggaagccctg acgtgtaagc tggtgctgga aggggctaac ggcccgacct atccggatgc
     1021 tgatgatgtt ctggccagcc gtggtatcct tgtggtgcct gacgtggtct gtaacgcagg
     1081 cggcgtaacc gtcagctact tcgaatgggt acaagatatg gccagcttct tctggagcga
     1141 agaagagatc aacgcgcgca tggacaaaat catgaccgac gcgatcgtcc atgtctggga
     1201 gaaagcggct gagaaatcct gttctctgcg caccgcagcc tatattgtcg cctgtgagcg
     1261 cattctgctg gcccgtaaag atcgcggtat ctatccaggt taaggcgaca aatcattgcg
     1321 ctaaaatcca cgtcccggcg tggatttttt gtctgtatac cccgttttcc acgcgcgcgc
     1381 cgataaattc tgtctcaata aaatgtctgt ttgttcgcaa aatagcggtt caatcacgcg
     1441 tatctggtca tcgtagacta aggttttgtc atggtaaatg ccgttggctt tggctcactg
     1501 ctaaggagat aacttgatga tacccccaga gattcgccgt tctgttctac tacagaaagc
     1561 cataaaactg gcgctggcag ggacgctgct gacgtttgca tcgttttcgg cgactgccgc
     1621 agacccgtct tccgacactg aaactccgca gccgccggat attttgcttg gcccgctctt
     1681 taatgatgtc cagaatgcaa aactcttccc cgatcagaaa acctttgctg acgccatacc
     1741 taatagcgat ccgctcatga ttcttgcgga ttatcgtatg cagcggaact agtccggctt
     1801 cgatttgcgt cattttgttg atgttaactt caccctgccg aaagcgggtg aaaaatatgt
     1861 cccgcctgcc gggcaatcat tgcgtgaaca tattgatggc ctgtggccgg tgctgacccg
     1921 ttcaactaaa aacgtcgaaa agtgggactc gctcttgccg ttgcctgaat cctatgtcgt
     1981 accgggtggg cgattcaggg agatttacta ctgggacagc tactttacga tgctggggct
     2041 ggcggaaagc gggcactggg ataaggtggc ggatatggta gcgaactttg gttacgaaat
     2101 tgacgcctgg gggtatattc ctaacggcaa ccgtacctac tacctgagtc gttcacagcc
     2161 gcctttcttt gcgtttatgg ttgaattact ggtgcaacat gaaggtgacg atgcgctgaa
     2221 agaatacctg ccgcaactgc aaaaagagta cgcctactgg atggagggcg ttgagacatt
     2281 gcagccaggg caacaaaacc aacgcgtcgt caaactggag gacggcagcg ttctcaaccg
     2341 ctactgggac gatcgggata cgccccgccc tgaatcctgg gttgaagata tcgctaccgc
     2401 caaaagcaac cccagccgcc cggcaacgga gatctatcga gacctccgat ctgctgccgc
     2461 ctccggctgg gatttcagct cccgctggat ggataatccg cagcagctca gtaccattcg
     2521 taccaccacg attgtccctg tcgatcttaa cgctctgctg tatcagctgg agaaaaccct
     2581 cgcccgcgcc agcgctgcgg cgggcgatcg ggccaaagcc tcgcaatatg acgcgctggc
     2641 caacgcgcgg caaaaagcca ttgaaatgca tctgtggaat aacaaagagg gttggtatgc
     2701 cgactacgat ctgcagaaca ataaaatccg tgaccaactc accgctgccg cgctgttccc
     2761 gctctatgta aacgccgccg cgaaagatcg cgccgcgaaa gtggcagcgg cggcccaggc
     2821 gcatctgcta cagcctggcg ggctggctac cacctcggtt aaaagcggac agcagtggga
     2881 tgcgccaaat ggctgggcgc cgttacaatg ggtcgctgcc gaaggattgc aaaattatgg
     2941 gcaggatgac gtggcaatgg aagtcacctg gcgcttttta accaatgtgc agcacaccta
     3001 cgatcgcgag aaaaaactgg tcgaaaaata tgacgtcagc agtaccggaa ccggcggtgg
     3061 cggcggcgaa tatccccttc aggacggctt tggctggagc aacggcgtga cgctgaaaat
     3121 gctcgatctg atttgtccgc aggaaaaacc gtgcgatagc gtaccgtcta ctcgtccggc
     3181 atcgttaagc gcaacgccga caaaaacgcc gtctgcagcg acgcagtaac gcgtgtttat
     3241 agtaggttga cccggcgctg accgggtcaa cgcttacacg ttctgcagcg gttagccgcg
     3301 tcgcagaagg cggaaaatca ccagcaccac aatcgcgccc accacggcga ccaggaaact
     3361 gtgcagatta aagccgctga tactgccgcc aataccaaac atcgtcgcca gccatccgcc
     3421 aacgaccgcc ccgacgatac cgagaataca ggtcaggata aatcccccgc catcgcgccc
     3481 cggcataagc aatttggcga taacgccggc aatcaaacca aaaacaatcc aggcgataat
     3541 tcccatttgc gaaccctctt tccagtaaaa acgttttaag tataggcaaa gtcgagcgtc
     3601 gcatttctga acactgattt atctcgcgga cataaaaatt tatttatcgc tattaagttc
     3661 tttctactga tgccgataac ccaacgatag tctgcgtatc aggggttatt tcgtgtgagt
     3721 ggttacaatg agcagttcct gaaaaaaaat ccattagcga tattaggcgt gctacgggat
     3781 ttaaataaaa atcaggttcc actgcgtatt tcatgggcgc atggtcaatt cattagtaaa
     3841 attttggcgg tagccccgga aaaactcatc gtggattacg gcagccagga atataaaaat
     3901 agcgccgtat tacgcgccgg gcaggtagcc attatcgcag aaacacaagg cgcaaaagtc
     3961 gagttcacgt tgccgcaact cgttacaggt gaatatcagc ggctgccggc ctttatcacg
     4021 cccctgccgt catcactgtg gtttgtccag cgccgggagt attttcgcat tggcgcgccg
     4081 ctgtatccgc cttattacgg cgtcaccacg ctaccggaca cccgtacgtt acgttttcgc
     4141 ctgtttgatc tttccctggg cggcatgggc gcgctactgg aatccgccat ccccgacgga
     4201 ctaatcgaag gcgcacgctt ttcgcaggtt gaactgaaca tggggccatg ggggattctt
     4261 cacgttgacg cccagcttct cgccatcagc gagcgtaagg tgattgatgg gaaaaatgaa
     4321 acgatcacca ctccccgcct gagctttcgt ttccttaacg ttagcccggc ggtggagcgg
     4381 gagttgcagc ggattatttt ttcgcttgag cgcgacgccc gagaaagagc gaataaagtg
     4441 cgagaataat cttcacgcta aactacatgg cgtccagcgc ctgctgaagc ttccagatat
     4501 agcgcggcgc ctgcggcgcg ggatgattat caacaacatg ttcaaaaaac tcgtcagcat
     4561 ccagatcgtt aattttttct atcgccttct tcctgtcgga tgaaaaagta cgcaataacg
     4621 cgcctgcgcc gttagcataa gagacgacca gcgcatattg catcacctgc ggatctttga
     4681 tgccggccag cggcccattt tccagaatgc tcagatacgc cgcgcccatt gagatgttac
     4741 gctcagggtt tttcagctcg ctggtggtcg gttcgccacg ccagcccata cgacggtaaa
     4801 cgtcgcgccc ggaagtcgac gcctttaact gcatcaggcc aatcgcattg gacttactga
     4861 ccgcgttagg gttgccgccg gattcaatgg cgataatcgc ggtgattaaa tgtggatcaa
     4921 ccccccatgc cgccccggct ttttcactga tgggcatcca ctgcatcgca cgctttacag
     4981 gcacttcggc attccacggt ggattcctgt aatcctgttt tgagctacag ccagccagta
     5041 ttactaccaa aaaagcaaac catcttaatt tcacgtcatc tatccttata gccgtaactt
     5101 atctgccgaa gaggttatac cgccccggcc aggtacttag gttgcctccc tggtgcgcat
     5161 ccagaaacgt cgcacaacga gggacatcgc ctaatatatg cggcatgata tacatttgca
     5221 ttctattgtc agcaaggaat taccatgtct ctgtttcatt taatcgcccc ctcgggctac
     5281 tgtattaacc aacaggccgc gttacgcggc gttcagcgcc tgactgacgc gggtcatcag
     5341 gtggagaatg acgaggtgat tcgtcgccgc tatcagcgtt ttgccggtac ggacgcggaa
     5401 cggctggccg atgttaattc gctggcctcg ctaacttcgc cggatacgat cgtcatgccg
     5461 gttcgcggcg gctatggcgc cagccgcttg ctggatcgta tcgactggca ggcgctcgcc
     5521 tcccggcaac agcgcgatcc cttactgatt tgcggtcata gcgattttac ggcgattcag
     5581 gctggactac tggcgcaggc caatgtcatc acctttagcg gtcctatgct ggcggcaaat
     5641 tttggcgccg aaacgctgaa tacgttcacc gagcaacatt tctggctggc gctacgcaag
     5701 gcgcaattta ccgtagagtg gcaaggcgac ggccctcagt gcgacgtaca gggcacctta
     5761 tggggcggaa atctggcgat gttgatttcc cttatcggta cgccctggat gccgactatc
     5821 gataaaggaa ttttagtgct ggaagatgtc aatgagcatc ctttccgggt ggagcgtatg
     5881 cttttgcaac tggagtacgc cggaattcta aaccgtcaga gcgccatcgt tctcggcagc
     5941 tttagcggcg cggcgcccaa cgagtatgac gccggctatt ctctggagag cgtctacgcg
     6001 tttttacgtt cccgtctgtc cgttccgctg attaccggtc tcgacttcgg gcatgaacag
     6061 cgtacggtga cgctccctat cggggcaaac gcaacgctta aaaatacgcg ccaggggact
     6121 caactcactt tatctggtca tcctacgctg caattgtaaa aaaagtcccc gacaggctaa
     6181 gtaaaacgct gccctggccg ttattatgtt aatgttaaat aatacgaagt cgtgtgagtc
     6241 aggagatata aaacgttgga tgctgcaaca attattagtc tatttatttt aggttccatc
     6301 cttgtaacca gcagtatcct gttaagttca ttctcatcgc gactgggtat cccgattctg
     6361 gtcattttcc tcgccattgg gatgttagcg ggtgtggatg gcattggcgg tattcctttc
     6421 gataattatc ctttcgctta tatggtcagt aacctggcgc tggcgattat tttactcgat
     6481 ggcggcatgc gcacccaggc cagctctttc cgggtagcgc tgggccccgc gctgtcgctg
     6541 gcgacgctcg gcgtactgat cacgtcgggg ttaacaggta tgatggccgc ctggctgttt
     6601 catctggatc ttatcgaagg tctgcttatc ggcgcgatag tcggttccac tgacgccgca
     6661 gcggtctttt ctctgcttgg cggcaaaggg ctaaacgaac gtgtaggctc cacgctggag
     6721 atcgaatcgg gaagtaacga cccgatggcc gtttttttga ccattacatt aattgagatg
     6781 atccagaaac atgaaaccgg cctggactgg atgtttgccg tccatattat ccagcagttc
     6841 ggtctcggta ttgtttttgg cctcggcggc ggttacctgc tacagcagat gatcaaccgt
     6901 atttctctgc ccagcggcct gtatccgatg ctggcgctca gcggcggtat tctgattttt
     6961 gctttgacga ccgcgcttga aggcagcggc attctcgcgg tctatctgtg cggattcctg
     7021 ttaggaaacc gtccgattcg caaccgttac ggcatcctgc aaaactttga cggactggcc
     7081 tggctggcgc agatcgccat gttcctggtc ctgggactgc tggtgacgcc ttccgatctg
     7141 tggccgattg ccgtccctgc gcttattctc tctatctgga tgattttctt cgcccgccca
     7201 ttgtcggtat ttaccggcct gctgcctttt cgcggcttca atcttcggga gcgcattttc
     7261 atcagttggg tcggactgcg cggcgcggtg ccgattattc tcgccgtttt cccgatgatg
     7321 gccgggcttg aaaacgctcg cctgttcttt aatgtcgctt tctttgtggt actggtgtcg
     7381 ctgctcctgc agggaacatc gctgtcatgg gcggcgaaga gagccaaagt ggtcgtgcct
     7441 ccggttggct ggccagtatc gcgcgtgggg cttgacatcc atcctgataa tccgtgggaa
     7501 caattcatct atcagttgag cgccgacaaa tggtgcgtcg gcgcggcgtt gcgcgacctg
     7561 catatgccga acgaaacccg cattgccgcg ctatttcgca ataatgaact gtttcacccc
     7621 acgggtagca ctcgcctgca ggaaggcgac gtactctgcg tgattggccg ggagcgcgat
     7681 ctgccagcgc tgggcaaatt gtttagccag tcgccgccgg tttcgttaga tcagcgtttc
     7741 tttggcgatt ttatcctcga agcgaacgcg aaattcgccg acgtggcgct tatctacggg
     7801 ctggaagaag gaacggaata ccgggataaa caacaaaccc tcggtgaaat catacagcag
     7861 ctgctgggcg ctgcgccggt cgttggcgat caggtggagt ttggcggcat gatttggacg
     7921 gtagctgaaa aagaagataa cgtggtacgc aagattgggg tacgcgtcgc cgaagacgaa
     7981 gcagaataag gtcgccggac aacgtcgacc cgcccccggt ggaccggtcg acgccttagc
     8041 ctgagttagg ttacgttgtc acaaacggca cgcgcggcgc tacggcgcac agtagcccat
     8101 agcccagcgt gcctgccgca gaggcgacat catcgacctt aatttctttg ccccataatt
     8161 caaccggcgt gccgattccc gcctgcggac acggcgtcaa atccaccgcc agcatatcca
     8221 ttgaaacggt gcctactgtt ctggtacgga taccgtccac cagcacgggc gtcccggtcg
     8281 gcgcatggcg tggatagcca tcggcataac ccgccgcgac gatgccaatg cgttgttcct
     8341 gagtcacaga ataccctccg ccatagccta ctctttcacc cgcgctcagc gtctgcacgc
     8401 caataatttc gctactcagc gtcatcacgg gttttagtcc ggtatcggca atatcccgcc
     8461 actgtcctga cggcgacgcg ccgtacaaaa taatgcccgg cctgacccag tcataatgcg
     8521 cctggggatg ccacagcgtc gctgccgaat ttgataacga gtatgcacac tgcaggcctt
     8581 ctgtcgccag cgcaatacgt ctcatcgcct ccccgatacc ttccggatga tcggcctgag
     8641 caaaatgtga catcagggtc atttcaccga cattgcgcat tgcccgcaat tgctgccaga
     8701 cggtctgcgc ccgctcaggc tgaaaaccga gtcggttcat accgctgttg actttgacat
     8761 agatatccag cggcgcgtta agccgcgcat tttgcagcgc tttcaactgc cagttactgt
     8821 ggatgcaggt ggtcagccga taagtgtcat acgcctccag gtcttgcgca tggaaaaacc
     8881 cctccagcat caatatcggc cctttccacc cgcgctcacg cagggtaatc gcctcttcaa
     8941 ggttgagcat agcgaaacca tctgtggcgc ccagcgcgct ccagacgcgt tcaataccgt
     9001 ggccgtaggc gttggctttc actaccgacc agacgcgcgc ctccggggcc gcccggcgca
     9061 caatagccaa attttgtttc attacctgta aatcaaggct ggcctgtata gggcgggtca
     9121 tttcacttcc tttatcagtt atgcgcgcta tgcaaacgtt gcgggcgggt gggcgtaaaa
     9181 tcggaacggt atcgcgccac gctcagatcg tcgtagggta tcgctggcgt acgacccaac
     9241 aagatatcgc ttaacaactg gcctgaaccg caggccatcg tccagcctaa ggtgccgtgt
     9301 ccagtattaa gccacagatt tttataacgg gtgcgtccta ctaccggcgt gccgtccggc
     9361 gtcatggggc gcaggccggt ccagaatgtg gcctgctcaa tatgaccgcc gcgcggaaaa
     9421 agatcgcgca caaccatctc cagcgtctcg cggcgcggtt gcagtaagtc ggtattaaag
     9481 cccacgattt ccgccattcc ccccacgcga atacgcttat caaaacgcgt aatagcgatt
     9541 ttgtaggttt catcaagaat cgtcgatacc ggcgcgccgt ctggctcgac gattgggatg
     9601 gttaatgaat agcctttcag cggatacacc gggatatcaa caatgccttt aagcatcgcc
     9661 gtcgaatacg atccaaacgc catgacatac gcatctgctt taatgatctc atcggcgcat
     9721 ttcacgccgt aaatctgatc attttcgtac agtaattttt ccacgggagt attaaagcga
     9781 aaggttacgc ccgcctgctc cgccatgcgc gccagacgct gggtaaagag ctgacagtcc
     9841 ccggtttcat cattcggtaa gcgcagcccg ccggttaatt tatgcgcaac ctcagccaga
     9901 gcgggttcaa cttccgccag tcggctggct tccaggagct gatacggcac cccggcatct
     9961 tccagcacgg cgatatcacg ggtggcgttc tcatactgtt gcgcggtgcg gaagagttgt
    10021 agcgttcccc cctggcggcc ttcatattcg ataccggtcg cggcgcgtag cgttttcagg
    10081 cagtcgcgac tatattccgc cagacgcacc atgcggcctt tattttccat ataatgccgg
    10141 gtatcgcagt tacgcagcat ttgccacatc cacttcagtt gaaatggggt gccatccaga
    10201 cgcaccgcca gcggcgcatg gcgctggaac atccatttta tcgccttcag cggtacgcca
    10261 ggggccgccc agggtgccgc atatcccggt gaaatttgtc cggcattcgc cgcgctggtt
    10321 tcttgcgccg ggccggattc gcgatcgatg acggtgacat catgccccgc ctgactcaag
    10381 taccaggcgc tggtcacgcc aactacgcca ctccccagga tgacaactcg catagccact
    10441 ccgttaatag
//
LOCUS       DAJVSD010000157        10407 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.157, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000157 DAJVSD010000000
VERSION     DAJVSD010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10407)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10407)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10407
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.157"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            122..1081
                     /locus_tag="OQP62_003113"
     CDS             122..1081
                     /locus_tag="OQP62_003113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF523 and DUF1722 domain-containing protein"
                     /protein_id="HCS1722597.1"
                     /translation="MNNKPVVGISGCLTGAAVRFDGGHKRMDFVMNSLAPWVAYKPIC
                     PEVAIGLPVPRPALRLIQTTCGDIRMRYSHAPHDDVTERMNAFADRFLPTIGELAGFI
                     VCAKSPSCGMERVRLYDEKGNRGRKAGTGLFTAAMMDKYPWLPIEEDGRLHDPVLREN
                     FIARIFALHELNALRAQGLSRHSLLAFHSRYKLQLLAHHQAGYREIGPFVARLHEWDD
                     LDAFFVRYREKLMAILRHPASRKNHTNVLMHIQGYFHRALNSRQRAELREVILGYRAG
                     RLPILAPLTLLKHYLAEHPDDYLRSQNYFEPYPDTLGLRLAIT"
     gene            complement(1177..1389)
                     /gene="fumD"
                     /locus_tag="OQP62_003114"
     CDS             complement(1177..1389)
                     /gene="fumD"
                     /locus_tag="OQP62_003114"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase FumD"
                     /protein_id="HCS1722598.1"
                     /translation="MTKPTKDDELYREMCRVVGKVVLEMRDLGQEPKYIVIAGVLRTA
                     LANQRIQRSALEKQAMETVINALARS"
     gene            complement(1487..2107)
                     /gene="ttrR"
                     /locus_tag="OQP62_003115"
     CDS             complement(1487..2107)
                     /gene="ttrR"
                     /locus_tag="OQP62_003115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460352.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator TtrR"
                     /protein_id="HCS1722599.1"
                     /translation="MATIHLLDDDTAVTNACAFLLESLGYDVKCWTQGADFLAQASLY
                     QAGVVLLDMRMPVLDGQGVHDALRQCGSTLAVVFLTGHGDVPMAVEQMKRGAVDFLQK
                     PVSVKPLQAALERALTVSSAAVARREIILCYQQLTPKERELASLVAKGFMNREIAEAM
                     NIAVRTVEVHRARVMEKMQAGSLAELIRRFEKMASPETRIRTTYEP"
     gene            complement(2082..3860)
                     /gene="ttrS"
                     /locus_tag="OQP62_003116"
     CDS             complement(2082..3860)
                     /gene="ttrS"
                     /locus_tag="OQP62_003116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     TtrS"
                     /protein_id="HCS1722600.1"
                     /translation="MRGKTVRRLAVLAAVGLLCHGAWAGTWNIGILAMRGEASTRSHW
                     QPLAKTLSQQLPGETFHIQPLDLHQMQEAVNQGTVQFVITNPAQFVQLNSHAPLRWLA
                     SLRSTRDGKAVSNVIGSVILTRRDSGITTAHDLIGKTVGAIDAQAFGGYLLGYKALSD
                     AGLRPERDFHLRFTGFPGDALIYMLREKAVQAAIVPVCLLENMDQEGLINKKDFIALL
                     SRPTPLPCLTSTPLYPDWSFAALPAVSDALADRVTRALFNAPAAASFHWGAPASTSQV
                     EALLRDVRQHPQQRRLWLDVKSWLIQHQLMVGGVILAFLLLTLNYIWVMLLVRRRGKQ
                     LERNSVVLHQHERALETARQMSVLGEMTSGFAHELNQPLSAIRHYAQGCLIRLRAADE
                     QHPLLPALEQIDQQAQRGADTLRNLRHWVSQAQGNPVLTEAWKAIAIREAIDHVWQLL
                     RMAQQFPTVTLHTEVSAALRVTLPSVLLEQVLANIILNAAQAGATHLWVVAERTENGI
                     SIVLQDNAGGIDEALLRQAFQPFMTTRKEGMGLGLAICQRLVRYGRGDISIRNQTAPD
                     GLSGTVVTIHFLHEHGGRDGDNSSTG"
     gene            4024..4776
                     /gene="ttrB"
                     /locus_tag="OQP62_003117"
     CDS             4024..4776
                     /gene="ttrB"
                     /locus_tag="OQP62_003117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrB"
                     /protein_id="HCS1722601.1"
                     /translation="MWTGVNMDSSKRQFLQQLGVLTAGASLVPLAEAKFPFSPERHEG
                     SPRHRYAMLIDLRRCIGCQSCTVSCTIENQTPQGAFRTTVNQYQVQREGSQEVTNVLL
                     PRLCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQ
                     TADKCTFCVHRLEAGLLPACVESCVGGARIIGDIKDPHSRIATMLHQHRDAIKVLKPE
                     NGTSPHVFYLGLDDAFVTPLMGRAQPALWQEV"
     gene            4777..5799
                     /gene="ttrC"
                     /locus_tag="OQP62_003118"
     CDS             4777..5799
                     /gene="ttrC"
                     /locus_tag="OQP62_003118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrC"
                     /protein_id="HCS1722602.1"
                     /translation="MTHSLIIEEVLAHPQDISWLPWAVQYFFFIGIAACAALFACYLH
                     WRKKDAATEENRALLIAITCAITAPLALTADLHQTARVWHFYAWPTPWSWMPWGALFL
                     PLFTGFLALWFLAQQIKRLFNKSYNVTKWLALASALCAVGLLIYTGREVSVVLARPIW
                     FSYAFPVAMFLSALQAFFALMIVAARRDSVRLPKILWGQLWTLAALGLVVAMWVSGDT
                     LSGTAIRQWITVALSAKYYAVGWLALWVFTLLFCSLALRHPLSELRRVLLVLSALALC
                     WLMRWTLLIQVQTVPKFNAQFNPYTLPGGTDGWLAILGTFGLWIALLISIRETLNGLT
                     RRLQHG"
     gene            5792..8854
                     /gene="ttrA"
                     /locus_tag="OQP62_003119"
     CDS             5792..8854
                     /gene="ttrA"
                     /locus_tag="OQP62_003119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrA"
                     /protein_id="HCS1722603.1"
                     /translation="MANLTRRQWLKVGLAVGGMVTFGLSYRDVAKRAIDGLLNGTSGK
                     VTRDRIFGNALIPEAQAQTHWQQNPQQTIAMTQCFGCWTQCGIRARVNADGKVIRIAG
                     NPYHPLSQEHPIDSSVPFSEAMEQLAGESGLDARSTACARGATLLESLYSPLRLLEPM
                     KRVGKRGEGKWQRISFEQLIEEVVEGGDLFGEGHVDGLRAIHAPDTPIDAKHPSFGPK
                     TNQLLVTNTSDEGRDAFLRRFALNSFGSKNFGAHGAYCGLAYRAGSGALMGDLDKNPH
                     VKPDWENVEFALFMGTSPAQSGNPFKRQARQLASARLRENFQYVVVAPALPLSTVLAD
                     PRGRWQPVMPGSDSALAMGMIRWIMDNQRYNADYLAIPGVQAMQQAGEQSWTNATHLV
                     IADELPTLAGQHLTLRHLTPDGEETPVVLNTDGELVDASTCRQARLFVTQYVTLADGQ
                     RVTVKSGLQRLKEAAEKLSLAQYSEQCGVPEAQIIALAETFISHGRKAAVISHGGMMA
                     GNGFYNTWSVMMLNALIGNLSLSGGVFVGGGKFNGVSDGPRYNMNSFAGKVKPSGLSI
                     ARSKTAYKASEEYRDKIAGGQSPYPAKAPWYPFVAGQLTELLTSALEGYPYPLKAWIS
                     NMSNPFYGVPGLRAVAEEKLKDPRRLPLFIAIDAFMNETTALADYIVPDTHNFESWGF
                     TAPWGGVASKATTARWPVVAPATHRTADGQPVSMEAFCIAVAKRLHLPGFGDRAITDP
                     QGNTFPLNRAEDFYLRVAANIAFMGKTPVALANQEDISLTGVSRILPAIQHTLKADEV
                     GRVAFIYSRGGRFAPEDSGYTEQRLGNAWKKPLQIWNADVAAHRHAITGERFSGCPVW
                     YPARLSDGRAIDDQFPIGQWPLKLISFKSNTMSSSTAVIPRLHHVKPANLVALNPQDG
                     ERYGLQHGDRVRIITPGGQVVAQISLLNGVMPGVIAIEHGYGHREMGATQHSLDGVPM
                     PYDPQIRAGINLNDLGFADPTRTITNTWLDWVSGAAVRQGLPAKIERI"
     gene            9177..10395
                     /locus_tag="OQP62_003120"
                     /pseudo
     CDS             9177..10395
                     /locus_tag="OQP62_003120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460347.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR family transcriptional regulator"
BASE COUNT         2393 a         2943 c         2701 g         2370 t
ORIGIN      
        1 catcaaaaaa atctccgcga aaacttagac aaaaaaacaa agttgtgtaa gttttaaatc
       61 agcgtgagat aacattttgc gccgttggcg tcagtcgtcg tactttcaat aagggggaat
      121 catgaataac aaacccgtag tcggcattag cggatgtctg actggcgccg cggtacgctt
      181 tgatggcgga cataagcgta tggattttgt catgaactct ctggcgccgt gggtggccta
      241 caaaccgatc tgcccggagg tggcgatcgg cctgcccgtg ccccgccctg cgctgcgtct
      301 tatccagacg acctgtggcg acattcggat gcgctatagc catgccccgc acgatgacgt
      361 caccgagcga atgaatgcct ttgccgatcg gtttctgcca acaataggcg aactggcggg
      421 gtttattgtg tgtgcgaaat cgcccagttg cggaatggag cgcgttcgcc tgtatgatga
      481 aaagggtaac aggggccgca aagctggcac ggggctgttt accgccgcga tgatggacaa
      541 atatccctgg ctgccgatag aggaagatgg tcgcctgcac gatccggtac tacgcgagaa
      601 tttcatcgca cgtatcttcg cgctacatga attaaatgcg ctacgcgcgc agggcttgag
      661 tcgtcacagt ttgctcgcgt ttcatagccg atacaaactt cagcttctcg cccaccacca
      721 ggccggctac cgcgaaattg gccctttcgt cgcgcgtctg catgagtggg acgatctgga
      781 tgccttcttt gtccgataca gagaaaaact gatggctatc ctgcgacacc ccgcttcacg
      841 taaaaatcac accaatgtgc tgatgcatat ccagggctat tttcaccgcg cgttgaacag
      901 caggcaacgc gcggaattac gcgaggtgat tctcggctac cgggcgggcc gactacctat
      961 cctggcaccg ttaacgctgc tgaagcacta tctggcggaa catccggatg actatctacg
     1021 cagccagaat tattttgagc cgtaccctga tacattaggg ctgcgcttag ccatcacctg
     1081 ataaccctgc gcatcgctaa cggcgggtaa ccagcccgcc atggtgacaa tcgcgacaat
     1141 tcaaaggcga tttcgttatt gccaccctga tagcggctat gaccgcgcca gagcgttaat
     1201 cacggtttcc atagcctgtt tttctaacgc gctacgttgg atgcgttgat tcgccagcgc
     1261 ggttcttaac acgcccgcaa taacaatata tttaggctcc tgccccagat cgcgcatttc
     1321 cagcacgacc ttgcccacca cccggcacat ctcgcggtac agttcgtcat cttttgtcgg
     1381 ttttgtcata cgttttactc gtcgccagct caaaccaaca gaatataaca gtcttctcaa
     1441 ttaaacaaaa tttgatgcaa atcaaagaaa taacgcagtt tattattcat ggctcatacg
     1501 ttgttcgtat tctggtctct ggcgaggcca ttttttcgaa acgcctaatc agttccgcca
     1561 ggctaccggc ctgcattttt tccatgactc tggcgcggtg cacctctacg gtacgcaccg
     1621 cgatattcat cgcttccgca atttcacggt tcataaaccc ttttgccacc aggctggcca
     1681 gctcacgctc tttcggcgtc aactgctggt aacacagtat aatctcacgg cgcgccaccg
     1741 ctgccgatga aaccgtcagc gcacgctcca gcgccgcctg tagcggtttt accgataccg
     1801 gtttttgcag aaaatcgacg gcgccgcgtt tcatctgctc cacggccatc ggtacatcgc
     1861 catgcccggt aagaaaaaca accgccaggg tacttccgca ctggcgcaac gcatcatgaa
     1921 cgccctgccc atccagtacc ggcattcgca tatccagtaa tacgaccccg gcctgataca
     1981 gactggcctg cgccaaaaaa tccgccccct gcgtccagca ttttacgtca tatcccagac
     2041 tttccagtaa aaacgcgcac gcgttagtga ccgccgtatc atcatccagt agatgaattg
     2101 tcgccatccc tgcccccatg ttcatgtaag aaatgtatcg tgaccaccgt tcccgacaga
     2161 ccgtccggcg cggtctggtt cctgatgctg atatcgcccc gcccataccg caccagccgc
     2221 tggcaaatcg ccagccctaa gcccatcccc tctttacggg tggtcataaa cggctgaaac
     2281 gcctgacgta atagcgcctc gtcgattccc ccggcgttat cctgtaaaac aatactgatg
     2341 ccgttttcag tgcgttcagc aacgacccat aaatgggtgg cgcccgcctg agccgcatta
     2401 agaatgatat tcgccagcac ctgttccagc agcactgacg gcagcgttac gcgcagcgca
     2461 gcgctaacct cggtatgcag agtcactgtc ggaaattgtt gcgccatacg caacaattgc
     2521 cagacatgat caatcgcctc gcgaatggct atggccttcc acgcttcggt tagcaccggg
     2581 ttgccctgcg cctggctgac ccagtgacgc aggttacgca gagtatccgc accgcgttgc
     2641 gcctgctggt caatctgctc cagcgccggc agcaagggat gctgttcatc tgcagcgcgc
     2701 agtcgaatca ggcacccctg ggcataatgt cgaatcgcgg aaagcggctg attaagctca
     2761 tgggcaaacc cggaggtcat ttcacccaac acgctcattt gccgggcggt ttccagcgcc
     2821 cgctcatgct gatgaagaac tacgctatta cgttccagtt gctttccacg tcgacgcacc
     2881 agcagcatga cccaaatata attgagcgtg agcaacagga acgccaaaat cacgccgccg
     2941 accattagct ggtgctggat taaccaactt ttgacatcca gccacagtcg acgctgctga
     3001 gggtgctgac gaacatcacg cagcaacgct tccacctgac tggtcgacgc tggcgcgccc
     3061 cagtgaaatg acgcggcggc gggcgcgttg aatagcgctc gcgttacgcg atccgccagc
     3121 gcatcgctta ccgcaggtag cgccgcgaac gaccagtcag gatataacgg cgtactggtt
     3181 aagcaaggca ggggcgtcgg tcgggaaagc agcgcgataa agtccttttt attaatcaat
     3241 ccttcctgat ccatattttc taacaggcac actggcacaa ttgccgcctg caccgctttt
     3301 tcgcgcagca tatagattaa ggcatcgcca ggaaatccgg taaaacgaag atgaaaatcg
     3361 cgctccgggc gtaagcccgc gtcgctgagc gctttatagc ctaataaata gccgccaaac
     3421 gcctgagcat caatcgcgcc gactgtctta ccgatgagat catgcgccgt ggtgatgccg
     3481 ctatcgcgcc gggtcaaaat cacgctgcca ataacattgc tcaccgcttt cccatcgcgc
     3541 gtggaacgca gggaagctaa ccagcgcagc ggcgcatggc tgttcagttg gacaaattgc
     3601 gccgggttgg ttatcacaaa ctgcacggtt ccctggttaa cggcctcctg catttgatgc
     3661 agatccagcg gctggatgtg aaaggtttcg cctggaagct gttggcttaa tgtctttgcc
     3721 aacggttgcc agtggctacg cgtagacgcc tcgccgcgca tggccaaaat accgatattc
     3781 cacgtccctg cccacgcgcc atgacaaagt agccctactg ccgccaacac cgccaggcgc
     3841 cttacggttt tacctctcac cccaatatcc ctgtcaatta tgttgtttta gatcaacaac
     3901 aagccgggta tgtggttaac cacaatagag cgcaccccgt ctcgattttt acactgtaaa
     3961 tcatcaacat tttttattca ttacacatga accaacatcg tgacaaatgt ttcattgttg
     4021 gcaatgtgga cgggagtcaa tatggacagc agtaaacggc aatttctcca gcagctcggc
     4081 gtcctgaccg ctggcgcctc gctggttccg ctggctgaag cgaaatttcc tttttcgccg
     4141 gagcggcatg aaggctctcc ccgacaccgt tacgccatgc ttatcgacct gcggcgttgt
     4201 atcggctgtc agtcctgtac cgtaagttgc actattgaaa accaaacgcc gcagggcgcg
     4261 tttcgtacga ccgtgaacca ataccaggtc cagcgtgaag gtagtcagga agtcacgaat
     4321 gtgctgttgc cgcgtctgtg caaccattgc gataaccccc cctgtgtgcc ggtctgcccg
     4381 gtacaagcca cctttcagcg ggaagacggc attgtggtgg tggataacaa acgctgcgtc
     4441 ggctgcgcct attgtgtcca ggcgtgtcct tacgacgccc gatttatcaa tcatgaaacg
     4501 caaactgccg ataaatgcac gttttgcgtc catcgtctgg aagccggact gttacccgct
     4561 tgcgtagagt cctgcgtcgg cggcgcgcgt attattggcg atatcaaaga tccccatagc
     4621 cgcatcgcca ccatgcttca tcaacatcgc gacgctatca aggtattaaa gccggaaaac
     4681 ggcacgtcgc cccatgtttt ctacctgggt ctggacgacg cctttgtcac cccattaatg
     4741 ggccgtgcgc agcccgcgct ttggcaggag gtctgaatga cgcattcact catcattgaa
     4801 gaagtgctgg ctcacccgca ggacattagc tggctgccgt gggcggtaca atatttcttt
     4861 tttattggca ttgccgcctg cgccgcactg tttgcctgtt atcttcactg gcggaaaaaa
     4921 gacgccgcaa cagaagaaaa tcgggcatta ctgattgcca ttacctgtgc gattaccgca
     4981 ccgctggcgc tgacggcgga tctgcaccag accgcccgcg tctggcattt ctatgcctgg
     5041 ccgacgccct ggtcgtggat gccctgggga gcgttgttcc tgccgctgtt taccggattt
     5101 ctcgctctgt ggttcctggc gcagcaaata aaacgattat tcaataaaag ttacaacgtc
     5161 actaaatggt tggcgttagc cagcgcgctt tgcgcggtgg gcctgttgat ttataccggc
     5221 cgcgaagtct ccgttgtgct ggcgcgccca atctggttta gctacgcctt ccccgtggcg
     5281 atgtttctta gcgccttaca ggcgttcttc gcgctgatga ttgtcgccgc ccgacgcgac
     5341 tcggtaaggc tgccaaaaat actgtgggga caactctgga cgctggcggc gctggggctg
     5401 gttgtggcca tgtgggtcag cggcgatacg ctttccggca cggcaatccg tcagtggatt
     5461 accgtcgccc tgtcagccaa atattacgct gtcggctggc tagcgctgtg ggtattcaca
     5521 ctgctgttct gtagcctggc gctacgtcat ccgttatcgg agctaagacg cgtcctgctg
     5581 gttctgagcg cgctggcgct atgttggctg atgcgctgga cattgttgat tcaggtacaa
     5641 accgtaccca agttcaacgc gcaatttaac ccttacacgt taccaggcgg aacggatggc
     5701 tggctggcta ttctcggcac cttcggcctg tggatagcgc tactgattag tattcgtgaa
     5761 acgctgaacg gactcaccag gagattacaa catggctaat ttaacccgtc gtcagtggct
     5821 aaaagtcggt ctcgccgtcg gtgggatggt cacttttggt ctgagctacc gtgatgtggc
     5881 gaaacgcgca attgatggcc tgttaaacgg gacatccggc aaggtaacgc gcgaccgcat
     5941 ctttggcaac gcgttaattc cggaggcgca ggcacaaacg cactggcagc aaaatccaca
     6001 acaaaccatc gccatgacgc aatgcttcgg ctgttggaca cagtgcggta tccgcgcccg
     6061 ggtaaatgcc gatggcaaag taatacgcat cgccggcaat ccctatcacc ccttgtcgca
     6121 ggaacacccg attgactcgt ccgtcccttt tagcgaagcc atggagcaac tggcgggaga
     6181 aagcggtctt gacgcccgct caaccgcctg cgcgcgcggc gccacgctgc tggaaagcct
     6241 gtacagtccg ctgcgactgc ttgaaccgat gaaacgcgtg ggtaaacgcg gcgaagggaa
     6301 atggcagcgc atcagctttg agcagcttat tgaagaagtc gtggaaggcg gcgatctgtt
     6361 tggcgaaggt catgtggacg gactgcgcgc tattcatgcg ccggatacgc caattgacgc
     6421 aaagcacccc agtttcgggc ccaaaaccaa tcagttactg gtcacgaata ccagcgacga
     6481 aggccgcgat gcgtttctgc gtcgttttgc gctaaatagc ttcggcagca agaatttcgg
     6541 cgcgcatggc gcctactgtg gactggctta ccgggccggc tccggggcat tgatgggcga
     6601 tctggataaa aacccgcatg tcaaacccga ctgggaaaac gtggagtttg cgctctttat
     6661 gggcacctcc ccggcacagt ccggtaatcc ctttaaacgc caggcgcgtc agttggcgag
     6721 cgcccggctg cgtgagaatt ttcaatacgt cgtggtcgcc cccgccctcc ccttatcaac
     6781 ggtgctcgcc gatcctcgcg gtcgctggca accggtcatg cccggcagcg attcggcgct
     6841 ggcaatgggg atgatccgct ggatcatgga taatcaacgt tataatgctg attatctggc
     6901 gattcccggc gtacaggcga tgcagcaggc cggcgagcaa agttggacca acgccacgca
     6961 cctggtcatt gcggatgaac tgccgacgct tgccggacaa cacctgacgc tgcgccatct
     7021 tacgcccgat ggcgaagaga cccccgtcgt gctgaatacc gacggcgagt tggtcgatgc
     7081 gtccacttgc cgacaggcac ggcttttcgt gacgcagtac gttacgctcg ccgacggcca
     7141 acgggtcacg gtgaagagcg ggttgcaacg cctgaaagag gcggcagaaa agctctcgtt
     7201 ggcgcaatac agcgaacagt gcggcgtgcc ggaagcgcaa attatcgcgc tggcggaaac
     7261 ctttatcagt cacggacgta aagctgcggt catcagtcac ggcggcatga tggccggcaa
     7321 tgggttttat aacacctggt cagtcatgat gcttaacgcg ctgatcggca acctcagctt
     7381 gtccggcggc gtctttgtcg gcggcggcaa attcaacggc gttagcgacg gcccccgcta
     7441 caacatgaac agttttgccg gaaaagtgaa accgtccggg ttgagtattg cccgtagcaa
     7501 aaccgcttat aaagcatcgg aagaataccg cgacaaaatt gccggcgggc aatcccctta
     7561 tccagccaaa gcgccatggt atccctttgt ggcaggccag cttaccgaac tgttgacctc
     7621 cgcgctcgaa ggctatcctt atccgcttaa agcctggatt tccaatatga gcaacccgtt
     7681 ttacggtgtt cccggtctac gcgccgtggc ggaagaaaag ctaaaagacc ctcgccgact
     7741 gccgctcttt atcgcgattg acgcctttat gaatgaaacg acggcgctgg cggattacat
     7801 tgtgccggat acgcacaatt ttgagagctg gggctttacg gcgccctggg gcggcgtagc
     7861 cagtaaagcc actaccgccc gctggccggt tgtcgccccc gccactcacc gaacggcgga
     7921 cgggcaacct gtctcaatgg aagcattttg tattgcggta gcaaaacggc tccatctgcc
     7981 cggcttcggc gaccgggcga taaccgatcc gcagggcaat acttttccac tgaaccgggc
     8041 ggaagacttc tatctgcgcg tagccgctaa tatcgccttt atgggcaaga cgccggtcgc
     8101 gctggcaaat caggaagata tttcgcttac cggcgtcagc cgcattctgc cagcaattca
     8161 gcacacgctt aaagctgatg aggtcggtcg cgtggcgttt atctactcgc gtggcggccg
     8221 gtttgcgccc gaagatagcg gctatacgga gcaacggtta ggtaacgcgt ggaaaaaacc
     8281 cttacagatc tggaatgcag atgtcgccgc ccaccgtcac gccatcaccg gggagcgctt
     8341 cagcggttgc ccggtctggt atccggcgcg tctgtcagat ggtcgtgcga ttgacgacca
     8401 gtttcccatt ggacagtggc cgctgaaact gatttcattt aaatcaaata ccatgtccag
     8461 ctcaacagcc gtcatcccgc gcttacacca tgtgaagcca gcaaacctgg tggcgctgaa
     8521 tccgcaagac ggcgagcgtt atggactgca acatggcgat cgggtacgga tcattacgcc
     8581 gggcggtcag gtcgtggcgc aaatcagttt gttaaatggc gtgatgccag gcgtcatcgc
     8641 catcgaacac ggatatggcc accgcgagat gggcgcaacg cagcactctc tggacggcgt
     8701 gcctatgccg tatgatccac aaatcagggc aggcataaat cttaacgatc tgggctttgc
     8761 tgatccgaca agaaccatta ccaacacctg gctcgactgg gtttctggcg cggcggtacg
     8821 tcaggggctg ccggcaaaaa tcgagcgtat ataaccccag ggccggagag cgatatcgtc
     8881 ttatttcgtc gagggtagcg actgataagc gaatgctgtc cggctgcata tactcactga
     8941 atcgtgcaag cccaactatt ttacgttcac cccgtcatat tacatagaaa atatatgaca
     9001 acactcacaa aactattttc cccttctgta agcaattaat atttaacaca ttggctgcgc
     9061 ttctgattat tgacattcat ttgggattac ttccggttga ccgcataatc tgtgattgaa
     9121 ttcaccgcat gacaatattg ccataaatac aattcaactc actacccgga ggcaatatgt
     9181 ttaaagaaga aagacgtcat gccatcatta atttactgat aaaggataat agtgttagcg
     9241 tcagtaaact ttcagacctt tataaggtta gccaggagac tattcgttcc gatctacgct
     9301 atttccagaa atcaggtatg cttcagcgtt gctatggcgg agggatttta aaccgtgacg
     9361 cgctgagtaa gcttatcact gaaaataaga ttgatatctc cagcactatc gccacgccaa
     9421 tccatcagga tgcaaaactg caccgggaaa acacaaaaaa agcaggcaag gtgtgtgttt
     9481 taggctcatt caatattgat gtttcagcaa ccgtgccgtg gtttccacaa agcggagaat
     9541 ccattctggc cagtcaattt ggattctatc ctggcggtaa aggagccaac caggctttag
     9601 cggcaaacaa tgctggtgct gcggcgcatt ttatttttaa agtgggcaaa gatcagttca
     9661 gcgcatttgc tatgaatcat attattcaat caggcaccac ctcatacagc gcgtatcaaa
     9721 cagataaagc gcccaccggt agcgcattga tctatgtctc cgccgtggat ggcgataata
     9781 ttatcgccat ctaccctggc gccaatatga tgctcaccac gcaagagatt aacgagcaac
     9841 accgttatat cgccgagtct gacgttatgt taatgcagct cgaaacgaac attgaagcgt
     9901 tgactgaatt tattcgcctg ggcaaacaag aaaataaaat gatcatgctg aatcctgccc
     9961 cctatacgaa acaggtgacg catttattat ctgatattga catcatcacg ccgaatgaaa
    10021 ctgaagcctc ttttttatcc ggcgtaacca ttactgatat taatgatgcg aaaaaagccg
    10081 gaaatattat tctgcaatcc ggggtgaaaa aagtcatcat tacccttggc gcccgtggtt
    10141 ctctgctctg tgagcacgcc cgcacgttgt atattcctgc gtggagcgcc gtggtaaaag
    10201 atgccgccgg acgcttttaa tggcgcctta gccgccgcgc tggcgcgaca agcagatatg
    10261 gtcgcagcca ttcaatatgc ctccgctttc gcttctctgg cggtggaaca agtcggtgcg
    10321 tcgagtatgc ctcagcactt gcaggtttta catcgaatgc gtacccaatc taataaagtc
    10381 attcacatta attaacaggt gacataa
//
LOCUS       DAJVSD010000158        10395 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.158, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000158 DAJVSD010000000
VERSION     DAJVSD010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10395
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.158"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            579..908
                     /gene="hdeB"
                     /locus_tag="OQP62_003121"
     CDS             579..908
                     /gene="hdeB"
                     /locus_tag="OQP62_003121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-activated periplasmic chaperone HdeB"
                     /protein_id="HCS1722604.1"
                     /translation="MNKFSLATAGIIVAALVTSVSVNAATDTTKTNVTPKGMSCQEFV
                     DLNPQTMAPVAFWVLNEDEDFKGGDYVDFQETETTAVPLAVELCKKNPQSELSKIKDE
                     IKKELSK"
     gene            1051..1836
                     /locus_tag="OQP62_003122"
     CDS             1051..1836
                     /locus_tag="OQP62_003122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OBAP family protein"
                     /protein_id="HCS1722605.1"
                     /translation="MKILPLALFIIPFLAGCGANNTPPQTPIPGEKTSAKLRTLETGA
                     AAIQSRPPVDAISTYLDGFHFYSGDKNGQMEAHHYVTVLNEDVMQAVIYDGNTKNARL
                     MGVEYIISERLFKTLPPEEKKLWHSHQYEVKSGSLVAPGLPQVADKALMSKIVNTYGK
                     TWHTWHTDRDKTLPMGIPALMMGFTGDGQLDPALLADRDRRLGIDTQAIKRERQDLPE
                     HPVIKGANAWEQGEVIQLQRVQGSGEHGRGDTAHFGISEQSRQ"
     gene            1965..3749
                     /gene="treZ"
                     /locus_tag="OQP62_003123"
     CDS             1965..3749
                     /gene="treZ"
                     /locus_tag="OQP62_003123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malto-oligosyltrehalose trehalohydrolase"
                     /protein_id="HCS1722606.1"
                     /translation="MSSKIFCKSWGAEYIAADVVRFRLWATGQQKVMLRLAGKDQEMQ
                     ASGDGWFTLDVSGVTPGTEYNFVLSDGMVLPDPASRAQKTDVNGPSYVIDPGSYAWRN
                     TGWKGSRWEQAVVYEMHTGTFTPEGTFHTAIAKLPYLAELGVTVIEVMPVAQFGGERG
                     WGYDGVLLYAPHSAYGTPDDFKAFIDTAHGYGLSVILDIVLNHFGPEGNYLPLLAPAF
                     FHKERMTPWGNGIAYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAIDQIEDSSARHVLV
                     EIAQRIREDITDRPIHLTTEDSRNIISLHPRDQDGNAPLFTAEWNDDFHNAVHVFATG
                     ETQAYYNDFADAPEKHLARALAEGFAYQGEISPQTGEPRGVKSTGQPPVAFVDFIQNH
                     DQVGNRAQGDRLITLAGAERTKVLLATLLLSPHIPLLFMGEEYGESRPFLFFTDFHGD
                     LARAVREGRAKEFADHAGENVPDPNAPETFQRSKLNWKQQHSEEGKAWLAFTRELLLL
                     RQKHIVPLLSAARESSGTVLQTAPGFIAVSWRFPGGTLSLALNISATTVLLPDLPGKT
                     LFAWPNESTGSLSQHSLIVRLAQGESAS"
     gene            3746..6274
                     /gene="treY"
                     /locus_tag="OQP62_003124"
     CDS             3746..6274
                     /gene="treY"
                     /locus_tag="OQP62_003124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malto-oligosyltrehalose synthase"
                     /protein_id="HCS1722607.1"
                     /translation="MIPTATYRLQFRNSMTFDRAAALVPYLKNLGISHLYASPIFTAT
                     KASTHGYDVTDANEIEPSIGGREGFERLVAELKAQGLGLIIDIVPNHMASSLENAWWR
                     DVLEYGKESRYARHFDIDWSRRLTLPFLGDTFDAVLGNGEIAIKPDPVTGKPTFAYYD
                     NYYPLAPATWQGREAEILALTDKAAIADLHERQPWKLMSWRDAARSLSYRRFFEVTGL
                     VGMRVEDKIVFDDTHRLILELVRTGAVDGLRIDHIDGLADPKAYLARLRQEVGPACYI
                     TVEKILAKGEQLPDDWPVSGTTGYEFIASLAEVLVDDKQIDNLRQAYETVTGAPVDMR
                     AELRAAKLLMVDRNFEGEFTRLLALALSIASELQIAQEESVVRQALRELLIAFPVYRT
                     YGTAEGLPPTDICLLHRIVERVKTLENPPQPEALTFLSRLLTGDVPVSSQEEATQFRV
                     RFQQLTGPLMAKSVEDTLFFRQNMGLALNEVGAEPVTHHFSIERFHHEMKTRQARQPD
                     ALSGTSTHDTKRGEDARARLYTLTEAPEQWSECLARWRQMNQTHVKFLNDGTAPKSAD
                     TWMLYQALTGVWPPMLQPQDETGLNALKIRFEAFVEKALREAKLRTDWVDSNEAYETA
                     MLDYARYLLAPDNQTFLQDFYRSLQPFIRAGLVNSLTQTVIKLTAPGVPDIYQGSEAL
                     NFSLVDPDNRREPDFATLAQQLDQLTPGVFSREESWLDGQVNQYATAALLRLRQQNHE
                     LFRFGDYIPLRAVGQRADKVIAYARVNHDDALIVVAPRLVFAECDGLLSQSHSGFWSG
                     TDIIIPGQLNQRRYRNVLTQERLMPGERLSLASHQGGVLVLMSD"
     gene            6331..8406
                     /gene="glgX"
                     /locus_tag="OQP62_003125"
                     /pseudo
     CDS             6331..8406
                     /gene="glgX"
                     /locus_tag="OQP62_003125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460517.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
     gene            complement(8519..9739)
                     /locus_tag="OQP62_003126"
     CDS             complement(8519..9739)
                     /locus_tag="OQP62_003126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HCS1722608.1"
                     /translation="MDLISPCSHKAQKVCNNTGSVKWDFIERHFGDGAGKLLPMWVSD
                     FDFACPPEVQAALHQRIEHGVFGYSERDEAYFNALLHWFSSRHQLTLKQEWVCSVEGV
                     VPGLALLVQMLTHPGDGVVVQGPYYGSFAKIITLNGRKLLENPLSESPDEGYQMDFCQ
                     LERLFRHERPPLMILCNPHNPTGRCWSANELEQLLLLCEAYDVTLISDEIWADLLLPC
                     ETFTSVLHLGERWHKRVISATAASKTFGLSSLRISNFLIPDPTLRQRFLSRLDAHGLD
                     VFNALSVQAATTAWNESRQWLDSLLDYLAENRRWFVEQATEHLPWARIVPAQGTYLLW
                     MDCKKLGLDDEQLKWVMADVAGIAPSMGSGFGPAGSGFIRLNLGCPRTYLEMAIDGLK
                     RISVKTIKGIPTGG"
     gene            complement(9696..10332)
                     /locus_tag="OQP62_003127"
                     /pseudo
     CDS             complement(9696..10332)
                     /locus_tag="OQP62_003127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001637949.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
BASE COUNT         2535 a         2619 c         2785 g         2456 t
ORIGIN      
        1 taacaataaa tctactggaa gtatacagtt tgtgtgcaaa aggtattttt atgattacgg
       61 aaacctgaaa ttgtccgact atctgtaaat gctatgaaat tgtattgtag attcgattgc
      121 gcccggtgct gatgactacc ggggcaatag tggttggttt agccctgata aggttcgcca
      181 gcggtgtaga caccgcaagc cgttttggac agggctggtg gttgcctccg ggatgctgac
      241 aggcaatctg tttacgatgt ttgttctgcc caccgtttgt gtctggctgg cgcgcgattg
      301 cgacggcatg tcagagcgaa gttctctttc atcagctcaa cgtagcgcat actcgtcatt
      361 tgctgttgtc gtggtctact ttttcgccct aaaatctgct cgccatgttg ctttattcat
      421 caaacatcaa aatcagtcaa cgtaaatatc aataatagcc atatcacgga gggtgatctt
      481 tattcctgag agaggtgggg tattattttc tgcgttctac attaacgggt taacgcgcag
      541 atgtagaggt tatttatata attattggag caacaacaat gaataaattc tcccttgcta
      601 cagcaggtat tatcgtggca gcgctggtaa ccagtgttag cgtgaatgcg gcaacagata
      661 ctactaaaac aaacgttacg cctaaaggta tgagctgcca ggagtttgtt gacctcaatc
      721 cgcagacgat ggcgccagtc gctttctggg tgctgaatga agatgaagat tttaaaggcg
      781 gggactacgt tgatttccag gaaactgaga cgacagcagt gccgctagcc gttgagcttt
      841 gtaagaaaaa cccgcagagt gaattaagca aaataaaaga cgaaatcaag aaagaactct
      901 caaaataaga gtaaactgat atcaaaaccc ggcctgtgtg tcgggtttta ctatttgtga
      961 caccgtcaca aatagcatct tccatttctt ctaccaatca cgtggtattg cactattttc
     1021 attagagccc tttcactata tggagaccta atgaaaattt taccgctggc actctttatc
     1081 attccttttc tggccggatg cggcgccaat aatacgccgc cgcaaacgcc tattcccggg
     1141 gaaaaaacat ctgccaaatt acgtaccctg gaaacaggcg cggcggctat tcaatccaga
     1201 ccacctgtcg atgccatcag tacctacctt gacgggttcc atttttatag cggtgataaa
     1261 aacggacaga tggaagcgca ccattacgtt accgtcctga acgaagatgt catgcaggcg
     1321 gtgatttacg acggcaatac gaaaaacgcg cgcctgatgg gggtggagta cattatcagc
     1381 gaacgtttat ttaaaacgct tcctcccgag gaaaaaaaac tgtggcacag ccaccagtac
     1441 gaggtgaaat ccggtagcct ggtggcgcca ggcttaccgc aggtcgctga taaggcgttg
     1501 atgagtaaga ttgttaatac ttatggcaag acctggcaca cctggcatac cgaccgggat
     1561 aaaaccctgc caatgggtat ccctgcgctg atgatgggct ttaccggcga cgggcagctt
     1621 gaccccgcgc tgctggccga tcgggatcgc cgtctgggga ttgataccca ggccattaaa
     1681 cgcgagcggc aggatctgcc tgaacatccc gttatcaagg gggctaacgc ctgggagcag
     1741 ggagaagtta tccagctaca gcgtgttcag ggctctggcg aacacgggcg aggcgatacc
     1801 gcgcacttcg gtatatctga gcaatcccga caataattcc acggttttac acgcagatag
     1861 gaaaaagaat gcctgttaag tgacagtgtc acgtaaaaat tagccccata gtctatgctt
     1921 gtttttcgga tgctgtagag gttatgagtt aaacggagcg acaaatgagt tcaaaaattt
     1981 tttgcaaaag ctggggggct gaatatatcg ccgctgatgt cgtccgcttt cgtctttggg
     2041 ccaccggtca gcaaaaggtt atgctcaggc ttgcgggtaa agaccaggaa atgcaggcga
     2101 gcggtgacgg ctggtttacg ctggatgtat ccggggtgac gccaggtacg gagtataact
     2161 ttgtactcag cgatggcatg gtgctccccg atccggcttc ccgcgcccaa aaaactgacg
     2221 tcaatggtcc gtcatatgtg attgatccag gcagctacgc gtggcgcaac accgggtgga
     2281 aaggcagccg ttgggagcag gccgtggtgt acgagatgca tacaggcacg ttcactccgg
     2341 aaggcacctt ccacaccgca atagcgaagc tgccttatct cgctgaactc ggcgttaccg
     2401 ttattgaagt gatgcccgtt gcgcaatttg gcggcgagcg cggctggggc tatgacggcg
     2461 tactgcttta cgcgccgcat tctgcctatg ggacgccgga tgatttcaaa gcgtttattg
     2521 acaccgcgca tgggtatggt ctttccgtca tcctggatat tgtgctgaac catttcggcc
     2581 cggagggaaa ttatttaccg ctattggcgc cggcgttttt ccacaaagag cgcatgacgc
     2641 cgtggggaaa tggtatcgcc tatgatgtcg acgccgtgcg gcgctatatc atcgaggcgc
     2701 cgttatactg gctgacagaa taccatctcg acggcttacg ctttgacgct atcgatcaga
     2761 ttgaggacag tagcgccagg catgtgctgg ttgaaatcgc acaacgtatt cgggaagaca
     2821 ttaccgacag acccattcat ctgactaccg aagatagccg caatattatt tctctgcatc
     2881 cccgtgatca ggatggcaat gcgccgctgt ttaccgccga atggaatgac gattttcata
     2941 atgccgtcca cgtttttgcg accggagaga cccaggccta ctacaacgat tttgctgatg
     3001 ccccggaaaa acacctcgca agagcgctgg ccgaaggatt cgcttatcag ggggaaatct
     3061 caccgcaaac cggcgaacct cgcggcgtaa aaagtaccgg acaacccccg gtcgcctttg
     3121 tggattttat tcagaaccac gatcaggtcg gtaaccgcgc ccagggcgac agactgataa
     3181 ccctggcggg tgctgaacga acaaaagtat tgctcgccac gttgctgctt tcaccgcata
     3241 ttcctctgct ttttatgggc gaagagtatg gcgaaagccg tccttttctt ttttttaccg
     3301 atttccatgg ggatttagcc cgcgccgttc gtgaaggtcg cgcaaaagag tttgccgatc
     3361 atgcagggga aaatgttccg gacccgaatg cgccagagac ctttcaacgc tcaaaactta
     3421 actggaagca acagcacagt gaagagggta aagcgtggct ggcatttacc cgcgaactac
     3481 tgcttttgcg ccagaagcat atcgtgccgc tgttgtccgc tgcccgtgag agctcaggaa
     3541 cggtattgca aaccgcgccc gggtttattg ccgttagctg gcgttttccg ggaggaacac
     3601 tgtcactggc gctgaatatt agcgccacga cggtattgct gcccgattta ccgggtaaga
     3661 ctctcttcgc ctggccgaat gaatccaccg ggtcgctttc ccaacattct cttattgtcc
     3721 gcttagccca gggagagtct gcatcatgat cccaactgca acgtatcgtc ttcagtttcg
     3781 caatagcatg accttcgatc gcgctgcggc gctggtgcct taccttaaaa atctgggtat
     3841 cagccatctt tatgcctcac ccatctttac cgccaccaaa gcgtcaacgc atggttatga
     3901 tgtcaccgat gcgaatgaga ttgagccttc tattggcggg cgcgaaggat ttgaaagact
     3961 ggtggctgaa cttaaagcac aaggtctggg attgatcatc gatattgtgc ctaatcacat
     4021 ggccagctcg ctggaaaacg cctggtggcg cgacgtgctt gaatatggca aggagagccg
     4081 ttacgcgcgc catttcgata ttgactggtc gcgccgactg acgctgcctt ttttaggcga
     4141 cacgtttgac gccgtgctgg gaaacggaga aattgcgatc aagccggatc ccgttacggg
     4201 taaacccacg ttcgcctatt atgataatta ttatccgctt gcgccagcga cgtggcaggg
     4261 gcgcgaggct gaaatactgg cgcttaccga taaagccgct attgctgatt tgcatgagcg
     4321 ccagccgtgg aaattaatgt cttggcgcga tgccgctcgc tcgctttcat atcggcgttt
     4381 ctttgaggtc acagggctgg tgggaatgcg ggtggaagat aaaatcgtct tcgacgatac
     4441 acatcggctg attctggagc tggtcagaac gggggcggtt gacggtttac gtatcgatca
     4501 tatcgacggc cttgccgatc cgaaagccta tcttgcgcgt ttacgtcagg aagtgggacc
     4561 ggcgtgctat atcaccgtgg aaaaaattct cgctaaaggc gagcaacttc ctgatgactg
     4621 gccggtttcc ggcaccacag gctatgaatt catcgcctcg ctggcggaag tactggttga
     4681 cgataagcag atagacaatc tgcgccaggc ttacgagacc gtaacaggcg cgccagtgga
     4741 tatgcgggcg gaattacggg cggctaaatt gctgatggtc gatcgcaatt ttgaggggga
     4801 atttacccgg ctgctcgcgc ttgcgctgtc gattgccagc gagctacaga tcgcacagga
     4861 agagagcgtc gttcggcagg cgttacgcga gttattaatt gcctttcccg tatatcgcac
     4921 ttacggcacg gcagaagggc taccgccgac cgatatttgc ctgttacacc gtattgtgga
     4981 acgggtaaag acgcttgaaa accctccgca gccagaagcg cttacatttc tgagccgtct
     5041 tcttaccggc gatgttcccg tctccagcca ggaggaggcg acacagtttc gcgttcggtt
     5101 ccagcaactc accggtccgc tgatggcgaa atcggtagag gatacgcttt tctttcgtca
     5161 aaacatggga ctggcgttaa atgaagtcgg cgccgagccc gtcacgcatc acttctccat
     5221 cgaacgcttt caccatgaga tgaaaacccg acaggcgcga cagcctgatg cgttatccgg
     5281 tacgtcgacc cacgatacca agcgaggcga ggatgcgcga gcacgcctgt atacgcttac
     5341 cgaagcgccg gaacagtgga gcgaatgcct tgcccgctgg cggcagatga accagaccca
     5401 tgtcaaattt ttgaatgatg gcactgcgcc aaaatcggcg gatacgtgga tgctatatca
     5461 ggcgctgacc ggcgtctggc ccccgatgct acaaccacag gacgaaacag gtttaaacgc
     5521 gctgaaaata cgctttgaag cctttgtgga gaaagcgcta cgcgaagcga agctacgtac
     5581 cgattgggtg gacagtaatg aggcttacga aacggcaatg cttgattacg cccgttattt
     5641 actggcgccg gataatcaga catttttgca ggatttttat cgttccttgc aacccttcat
     5701 ccgcgcagga ctggttaaca gcctgacgca gaccgttatc aaattaaccg cgccgggagt
     5761 acctgatatc tatcagggga gcgaggcgtt gaattttagc cttgtcgatc ccgacaaccg
     5821 ccgcgaacca gatttcgcca cgctggcgca gcagttagac caactgacgc cgggagtttt
     5881 ctcgcgcgaa gagagttggc tggacgggca ggtgaatcag tatgccaccg ccgccttact
     5941 gcgtttgcgt cagcagaatc atgagctctt ccgttttggc gactatatac cgctgcgggc
     6001 tgttggtcag cgtgccgaca aggtcatcgc ttacgccaga gtcaatcatg atgatgcgct
     6061 gattgttgtt gcgccccgac tggtgttcgc cgaatgtgac ggcttattat cacaatcgca
     6121 tagcggtttc tggtcaggaa ccgacattat tatacccgga cagcttaatc agcgtcgtta
     6181 tcgcaatgtg cttacccagg agaggttaat gcctggtgaa cgcctgtcgt tggcctcaca
     6241 tcagggcggc gtactggttt taatgagcga ctgagtttat gtgttgatgt gccgtgacag
     6301 gacaacgttt accgtgggtg gagaaagaga atgacaacaa acagggcttt tgaaatcaga
     6361 tcaggataca gccatacgct tggcgcgaat tatgacggcg aaggcgtgaa tttcgctatt
     6421 ttttccgccc atgcggaacg cgtcgagctt tgtctttacg atccgagtgg ggagcatgaa
     6481 atcgctcgtc tggagttacc ggaatatacc gacgaaatat ggcacggcta tgtcacgaag
     6541 ttgcagcccg gcgcgctgta tgggtaccgc gtttacggtc cttatgaccc ggaaaatggt
     6601 catcgtttta accccaataa gctgcttatt gacccttatg cccgtgagct ggtgggcgat
     6661 attcagtgga acgatgcgca tttcgcgtat caattacttc atgacgataa agatttgacc
     6721 tttgatgacc aggatagcgc gccatttacg cctaaatgtc gggtgattga tccggctgag
     6781 gctaactggg aggatagaca acggccttcc ataccgtggt cgaacgccat tatttatgaa
     6841 acgcatgtaa aaggctttac ccagcttaat tcggcgatcc ctgagcctct acgcggtacg
     6901 tttgagggca tggggcataa agccagcgtg gattacatta aaagtctggg gattacctcc
     6961 gtcgagcttt tacccgttca ctggttcccg gacgatcagc atctgctcga taaaggactg
     7021 aaaaatttct ggggatataa ctcgctgggc ttttttgcgc cggcgacgcg ctactatggt
     7081 ccaaaaggta ttcagggatt ccgcgatatg gtgcgcgctt tccatgatgc cggcgtcgaa
     7141 gtgatactgg atgtggtcta taaccatacg gcagaaggga atgaacttgg ccccacgctg
     7201 tcatttaaag gtatcgataa cttctcttac tatcgcacca tgcccgatca gcatcgctat
     7261 tatattaacg atacagggac aggtaatacc gtcaatacct ctcatccacg ggtactgcaa
     7321 atggtgatgg attcgcttcg ctattgggcg gagtcaatgc atgtcgacgg ctttcgtttt
     7381 gatttgggca ccattcttgg tcgtgagccg gaaggctttg atcagagagg cggctttttt
     7441 gatgcggtaa cgcaagaccc ggtgctggca aaactgaaac tgattggcga accctgggat
     7501 atcggaccgg gcggctatca ggttggcggt tttccaccag ggtggggcga atggaatgat
     7561 aaatatcgcg atacggttcg cgaatactgg aaaggtgaca acgtcacaaa tgatttcgcc
     7621 gcacgcctgc tgggttccgg cgatctctac gatttgcgcg gccgtcgctc ctggtcaagc
     7681 gttaacttta ttactgccca tgacggcttc acgctgaacg atctggtgtc ttataacgac
     7741 aaacataatg aagccaatgg cgaagataat aatgacgggc ataatgataa ccgctcctgt
     7801 aactatggcg cagaagggcc aaccgacgac gagggcatca atgcgatacg cgagcgacag
     7861 aaacgtaatt tcctgaccac cttacttttc tcacacggca cgccgatgtt attagcgggc
     7921 gatgagtttg gccgcagtca gatgggcaat aacaatggct actgtcagga cagtgaaata
     7981 tcgtgggtcc actgggataa tttgccggaa accgccaatg cgctacggga gtttacccgt
     8041 catctgattc aactgcgcgc cacgcaaccg ttgctgcgcc gggagagctg gcgtgacggt
     8101 ctggagatcc gctggtttaa cgccggcgga ggggcgcagt aatccgaaca atgggatgag
     8161 ggatcgacga taggcgtatg tattagtcga cccgatcttc agccggaagc ggggatctgg
     8221 catgacgcct tactgctttt caatccgttt gaaggcagcg taccgttccg tattccgatg
     8281 tggggagaag gcggctgggt gcttgaactg acgactgccg atgacgcgca gcagggaatg
     8341 cggattaccg aagaaatgga tttcgatctg gccgggcgca gcatcgtgtt attcagacgc
     8401 ccctgatagt gaaactgcgc tccggaccca accggcctta atggccggtt ttttactggc
     8461 gctcaggcga tatcatgccg cagaaataac accgttgtca gtttaccgcc cgaaaaattc
     8521 atccgcctgt tggtattcct ttgattgtct tcaccgatat tcgcttcagg ccgtctattg
     8581 ccatttcaag gtaggtacgt ggacatccca gatttaaacg gataaatccg ctgcccgccg
     8641 ggccaaagcc gctgcccatt gaaggagcaa tacccgcgac atccgccatt acccatttta
     8701 gctgttcgtc atccagtccc agttttttac aatccatcca taataaatag gttccctgcg
     8761 ccgggacaat tcttgcccag ggaaggtgct ctgtcgcctg ttcaacaaac cagcggcggt
     8821 tttccgccag ataatccagt agcgaatcca gccactgtct gctttcattc catgcggtag
     8881 ttgccgcctg aacggagagg gcgttaaaga catccagccc atgagcgtcc agacgagaca
     8941 ggaaacgctg gcgaagcgta ggatcgggaa tgagaaaatt agaaattcgc aacgacgata
     9001 agccaaacgt tttgctggcc gcagtggcgg agatgacccg tttatgccag cgctccccta
     9061 aatgcagtac cgaggtaaag gtttcgcagg gcagcaatag atcggcccat atttcatccg
     9121 agatgagagt gacatcataa gcttcacata ataaaagcag ttgctccagc tcgttggccg
     9181 accagcaacg cccggttgga ttatgtggat tacacaaaat cattagcgga gggcgctcat
     9241 ggcgaaacag cctttccagt tggcaaaaat ccatctggta gccttcatcc ggcgactcgc
     9301 taaggggatt ctccagcagt tttctaccat taagcgtgat tattttggcg aaggagccat
     9361 agtatggccc ctgaaccact acgccgtcgc ctggatgcgt caacatttgc actaagagcg
     9421 ccaaccctgg tacgacgcct tccacgctgc atacccattc ctgttttaac gtgagctggt
     9481 ggcgtgacga aaaccagtga agcagggcgt taaaataggc ctcatcacgt tcgctatagc
     9541 caaatacgcc gtgctcgatt cgctgatgca atgccgcctg aacctctggc gggcaggcaa
     9601 aatcgaaatc agaaacccac atcggcagca gttttccagc gccgtcgcca aagtgacgct
     9661 caataaaatc ccactttacc gaaccagtat tgttgcacac cttctgcgcc ttgtgggaac
     9721 atggcgatat caaatccatc aatgaaagcg tccagtccct gtttgatgct cagtccctgc
     9781 atgatgacgc cgaggaacaa ggcaagtacg caggcgctta acattaatgg gatgacaggc
     9841 tttttgcgaa ttgcgcccca cagtacgatc accggcggca aaataagaac aatattaaaa
     9901 tggtatagcg actccagcga gtggatgatg tccgtaacgc gctgcggcgt agccacctcg
     9961 cccagcatat tactgtgtcc ggcgataaga taaaccacgg cggcaagcag gaaacttggc
    10021 agggtcgtcc aaagtaaatg ctgaatatgc tcaaacagag tagtgtctgc gacaatcgcg
    10081 gcaaagttag tcgagtcgga caacggtgag attttgtcgc cgaaataagc gccagaaaca
    10141 acggcgccag ctgctgctgc aagcgacacg tccagcccgg cggcaacccc cattaacgca
    10201 acgccaaccg tcccggcgga cccccacgat gtaccggtac agacggagac cacgctggtt
    10261 aaaaagaagg ctgcaatcaa aatagatacg tagccccatg atgccgtaac cgataatcaa
    10321 caataacaac atggagatga ctgggattag cgctaaaccc aatgacagcg ttttcttctt
    10381 gttttgtgat gcact
//
LOCUS       DAJVSD010000159        10374 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.159, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000159 DAJVSD010000000
VERSION     DAJVSD010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10374
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.159"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            677..1792
                     /gene="iroB"
                     /locus_tag="OQP62_003128"
     CDS             677..1792
                     /gene="iroB"
                     /locus_tag="OQP62_003128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="salmochelin biosynthesis C-glycosyltransferase
                     IroB"
                     /protein_id="HCS1722609.1"
                     /translation="MRILFVGPPLYGLLYPVLSLAQAFRVNGHEVLIASGGKFAQKAA
                     EAGLVVFDAAPGFDSEAGYRRQEALRKENNIGTKMGNFSFFSEEMTDPLVAFAGQWRP
                     DLIVYPPLGVVGPLIAAKYDIPVVMQTVGFGHTPWHIKGVTKSLSNAYRRHGVSAPPR
                     DLAWIDVTPPSMSILQNDGEPVISMQYVPYNGGAVWEEWWERTPDRKRLLVSLGTVKP
                     MVDGLDLISWVMDSASEVDAEIILHLPANARSDLRSLPPNVRLVDWLPMGIFLNGADG
                     FIHHGGAGNTLTALHAGIPQIVFGQGADRPVNARAVVERGCGIIPGKSGLTSSMINTF
                     LGNRALRETSQEVAAEMAAQPCPTEVAKKLIAMLQHG"
     gene            1873..5529
                     /gene="iroC"
                     /locus_tag="OQP62_003129"
     CDS             1873..5529
                     /gene="iroC"
                     /locus_tag="OQP62_003129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="salmochelin/enterobactin export ABC transporter
                     IroC"
                     /protein_id="HCS1722610.1"
                     /translation="MPATHSPMPARAWIVRLARVCWERKTLSIIVIVASVSTILLAAL
                     TPLITRQAVNDAIAGDTTRLPLLACGLLLIALFDFIGNYVRRGYAGELSLWVQHTLRS
                     RAFDSIQKLDGAGQDALRTGQVISRTNSDLQQVHTLLQMCPVPLAVLTYYVAGIAVML
                     WMSPSMTLIVICVLAALAITALRARRRVFAQTGLASDRLAHMTEHMREVLEQISVVKS
                     CVAELRETRWLDGQSRQMVRVRIGAAISQAMPGATMLALPVIGQIVLLCYGGWSVMNG
                     RIDLGTFVAFASFLAMLTGPTRVLASFLVIAQRTQASVERVFALIDTRSRMEDGTESV
                     EGQIIGLDVEKMSFHYDNGNRILNEISFSIHAGETVAVVGASGSGKSTLLMLLARFYD
                     PTSGGVWLNTTTGQQNIRDLKLTALRRRVGVVFEDAFLFAGTVAENIAYGHPQATQDD
                     IRRAADAAGASGFINALPQGFNTRLTERGSNLSGGQRQRIALARALITAPELLILDDT
                     TSAVDAGTEAEINTALGRYADNEHMLLVIARRRSTLQLVDRIVVLDKGRVVDIGTQAE
                     LDARCPTFRSLMSGEGDFLALAPAEQRTLWPTTQAVKSDDAHERQTTAGKGFVDRMTR
                     VPERAVQMALAGHGSQVSSLLTPVAWMFVIAALLIALDSAAGVGVLVLLQRGIDSGVA
                     AGDMSTIGICALLALCLVAIGWCCYALQTIFAARAAESVQHTVRLRSFSHLLRLSLPW
                     HEKHIDSRLTRMTVDVDSLARFLQNGLASAATSIVTMVAIAAAMFWLDPILALTALSA
                     VPVVILATWIYRRLSSPAYAQARLEIGKVNSTLQEKVSGMRVVQSHGQQKQEAARLRA
                     LSDNFRATRVRAQKYLAVYFPFLTFCTEAAYAAVLLIGATRVAEGEMTPGILAAFFLL
                     LGQFYGPVQQLSGIVDSWQQATASGKHINALLATEETENIEPSSITPGTGGALRLEAL
                     TFRYPEKTQPVLDNLSLTIPPGTVVAVVGRSGAGKSTLIKLLAGLYSPGSGQIRVGER
                     LIDAASLSDYRRQTGLVTQDVALFSGDIAENIRYSRPDSSDTEVEIAARQAGLFETVQ
                     HLPLGFRTPVNNGGTDLSAGQRQLIALARAQLAQAHILLLDEATARIDRSAEERLITS
                     LTGVTHTEKRIALIVAHRLTTARRCDVIVVIDKGCIAEYGSHEQLIAAHGLYARLWRA
                     SVGQTRDTQGEVVG"
     gene            5639..6883
                     /locus_tag="OQP62_003130"
     CDS             5639..6883
                     /locus_tag="OQP62_003130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HCS1722611.1"
                     /translation="MRLSPPVAPVAIQTATRLRRQLAAGSQVDASHFWREANSLALPL
                     VTAINGADDEREVTFLWRAASPLRGVYVRLNRVTDKDNVAKGMMTQLPTTDIWHLTLR
                     LPASYCGSYTMVEIPPKTPDETVLQLGSRFASLVGKADPLNSTPGINVRGNAQESVLA
                     LDHAPAQEEWSGCRAYAGQLFTSEHRLAGQRRRVRLYLPDVPVEQPLGLLVLTDGEIW
                     FDHLGVSAAIDAAIRSGRIAPVAVLGVDNINARERVAILGGRRELVLDIAERLLPTLR
                     AKYPERQWADRTQTVLAGQSLGGVTALMAARHAPESFGLVLSHSPSMWWTPDNRNRPP
                     HFSAEERSWVSEHVLSAPSPAVRTHLCVGSLEGSTVPQVKQLHEKLRAAGVESHCCVY
                     TGGHDYAWWRGALIDGLRLLPR"
     gene            6915..7832
                     /locus_tag="OQP62_003131"
     CDS             6915..7832
                     /locus_tag="OQP62_003131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS1722612.1"
                     /translation="MYGRQYHNKCYRVALFLVSFCFSALSYAQPDMQPLGPNMADKGS
                     GYYHFRVNDFQSADGARHYRVWTAIPNKAAPPSGYPVLYMLDGNAVMDRLPETLLKQL
                     ADHSPPVIVAIGYQTNLPFDLNGRAYDYTPAPGIDRDDSENNPRFHRKTGGGPAFRQL
                     LERHIAPQVEQGITINPERRGIWGHSYGGLFVLDSWLSSSFFHIYYSASPSLSRDNFA
                     LLNRLTAVKPSPFCHKKLIIMEGSASNGDSRQRQMAELLQKVQETVRTLENNGVNAAL
                     QHYPGLGHGPMFNASFRSALLGISREPAS"
     gene            complement(7892..10072)
                     /locus_tag="OQP62_003132"
     CDS             complement(7892..10072)
                     /locus_tag="OQP62_003132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461704.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HCS1722613.1"
                     /translation="MGMRVKKFIWLITVVSTGINSPLSAAESTDDNGETIVVESTAEQ
                     VLKQQPGVSIITRDDIQKNPPVNDLADIIRKMPGVNLTSNSASGTRGNNRQIDIRGMG
                     PENTLVLIDGVPVTSRNSVRYSWRGERDTRGDTNWVPPEMVERIEMIRGPAAARYGSG
                     AAGGVVNIITKRPTNDWHGSLSLYTNYPESSKEGDTRRGNFSLSGPLAGDTLTMRLYG
                     NLNRTDADSWDINSSAGTKNAAGREGVTNKDINSVFSWKMTPQQILDFEAGYSRQGNI
                     YAGDTQNSNSNAVTKSLAQSGRETNRLYRQNYGLTHNGIWGWGQSRLGFYYEKTDNTR
                     MNEGLSGGGEGRITNDQTFTTNRLTSYRTSGEVNVPVIWLFEQTLTVGAEWNRDELND
                     PSSTSLTVKDSNIAGIPGSAANRSSKNKSEISALYVEDNIEPMAGTNIIPGLRFDYLS
                     ESGSNFSPSLNLSQELGEFVKVKAGIARAFKAPNLYQTSEGYLLYSKGNGCPKDITSG
                     GCYLVGNKNLDPEISINKEIGLEFTVDDYHASVTYFRNDYQNKIVAGDQIIGRSASGA
                     YVLQWQNGGKALIEGIEASMAVPLMPDRLNWNTNATYMITSEQKDTGNPLSIIPKYTV
                     NTFLDWTITNALSANVNWTLYGKQKPRTHAESRSEETKGLSGKALGAYSLVGANVNYD
                     INKNLRLNVGISNIFDKQIYRSAEGANTYNEPGRAYYAGVTASF"
BASE COUNT         2260 a         2878 c         2830 g         2406 t
ORIGIN      
        1 cccctgaata aaaaccggag atgatgccag ttagccgtta tctctgcatt ttcataaacg
       61 ttggttttca agaaccaata aatcgtgtgg ctggtgcgct ataaaaatcg cagagcggtg
      121 acgatagtcc gcataaggag ctgttcgttc gcaacattcg aacggtgacg ttaaagccgg
      181 tttcattggc taatgaagac gaaggggaca aaattactac agagttgata ccacagagat
      241 agtccaggtt cgcaggtgat acgggattta acgccggaaa gtctgcacag acacgatctg
      301 ccgccggaca ccattaaatt gccccgcaac gtgttatcaa tactactccc tgcgtttccc
      361 gttaccttgc tgtcggtacg tttaccgcat tgtctgaaag gttatttgcg aagttatcat
      421 taataatcca cgggcgtctg gtatgcgaat ccagttcccc aatcctggcg ttttgccttc
      481 tcgaccatac gcgcgtaaat aagcctgaaa ccaaacttca ccgcttaacg ctctcctctt
      541 ccccgatttt tacgcaaaaa atcatcacat gatcaagggt cgtatttatt attgcatttt
      601 tcaaatgata ttggtaatta ttatcattct cattaacgac ttattcgatt tatgacgtgg
      661 agagagagga tttctcatgc gtattctgtt tgtcggtcca ccactgtatg gactgctata
      721 ccctgtgctg tccctggcgc aagcgtttcg tgttaatggc catgaagtgc tgattgcaag
      781 cggtggaaaa tttgcacaga aagcagcaga agctgggttg gtggtatttg acgctgcgcc
      841 tggtttcgat tcggaagcgg gttatcgccg tcaggaggca ttgcgaaaag aaaataacat
      901 tggaacaaaa atggggaact tctcattttt cagcgaagag atgaccgacc cgctggtcgc
      961 gttcgccgga cagtggcggc cagatctcat cgtctatcct ccccttgggg tcgttggacc
     1021 actgattgcc gctaagtatg acattccggt agtaatgcaa accgtcggct tcggtcatac
     1081 gccctggcac atcaaaggcg tgacgaaatc actttctaac gcctaccgcc gccatggggt
     1141 cagcgcgcca ccaagagatc tggcgtggat agacgtcaca ccgcccagca tgagcatact
     1201 gcaaaatgac ggagagccgg ttatctccat gcaatacgtc ccgtataacg gcggcgccgt
     1261 ctgggaagaa tggtgggaac gtacacctga tcgcaagcgt cttctggtta gcctcggcac
     1321 cgtcaaaccg atggtggatg gcctggatct gatttcctgg gtaatggatt ctgccagcga
     1381 agtagatgcc gaaatcattc tgcatcttcc ggcaaacgcc cgctcggatt tacgttctct
     1441 gccgccgaat gtccgtctgg tcgactggct tccgatgggc attttcctta acggcgccga
     1501 cggttttatc caccatggcg gcgcaggcaa cactctgacg gcgctgcatg ccggcattcc
     1561 gcagatagtc tttggccagg gtgccgacag acctgtcaat gcccgcgccg tggtcgagcg
     1621 cggatgcggc attattcccg gtaagagcgg acttacgagc agcatgatca atacctttct
     1681 cggtaatcgc gcgcttcgcg agacgtcgca ggaagtcgcg gcggaaatgg cggcccagcc
     1741 ttgcccgacc gaggtggcaa aaaaactgat cgccatgctg caacacggct aaccgcggca
     1801 gcgcaatgac aatatggcgg ctgagcccag actgtgtcgc cataactcat ctttcaccga
     1861 taaggaggct taatgcccgc gactcattcc cccatgcccg ctcgtgcctg gatagttcgc
     1921 cttgcccgcg tgtgttggga acgtaaaaca ctgagcatca ttgtcatcgt agcatcagta
     1981 tcgaccattt tactggctgc gctgacgccg ctaataacgc gtcaggccgt caatgacgcg
     2041 atagcaggcg atacgacccg cctgccgtta cttgcctgcg gcctgctgtt aattgccctt
     2101 tttgatttta tcgggaatta cgtgcgccgc ggctatgccg gagaactctc gttgtgggtt
     2161 cagcatacgt tacgtagccg tgcgttcgac agtattcaaa aactggacgg cgcaggccag
     2221 gacgccttgc gtaccgggca ggtcatttcg cgtaccaaca gcgatcttca acaggtacac
     2281 accttgctac agatgtgtcc ggtgccgctg gcggtgctca cttactatgt ggccggtatc
     2341 gcggtgatgc tatggatgtc gccatccatg acgcttatcg tgatttgcgt actggccgcc
     2401 cttgctatta ccgccctgcg cgcccgtcgc cgtgttttcg cgcaaacggg gcttgcctca
     2461 gaccggctgg cgcacatgac ggaacatatg cgcgaagtat tggaacagat ctcagtggtg
     2521 aagtcctgcg tggcggagtt acgcgaaacg cgttggctcg atggtcagtc gcggcagatg
     2581 gtgcgggtac ggatcggtgc cgctatctcg caggcgatgc cgggcgcaac catgctggcg
     2641 ctaccggtga tagggcagat cgtcctgctg tgctatggcg gctggtcggt gatgaacggg
     2701 cgcatcgatc tgggaacctt cgtagcgttc gcgagttttc tcgctatgtt gaccggccct
     2761 acccgcgtac tggcatcgtt tttggttatc gcacagcgca cacaggcgtc ggtagagcgc
     2821 gtcttcgcgc ttatcgacac gcgttctcgc atggaagacg gtactgagtc ggttgagggt
     2881 cagattatcg ggctggacgt ggagaagatg agtttccact acgacaacgg taaccgtatc
     2941 ctcaatgaga tctcgttttc cattcacgcc ggtgaaaccg tggcggtggt tggcgcatcc
     3001 ggctccggga aatcaacatt gctgatgttg ctggcgcgct tttacgatcc cacctccggc
     3061 ggagtatggc tcaacaccac tacgggtcaa cagaatattc gcgacctgaa actgacggcg
     3121 cttcgtcgtc gcgttggcgt agtttttgaa gacgcgtttc tgtttgccgg tacggtggcg
     3181 gaaaacatcg cctatgggca cccgcaagcg actcaggacg acattcgacg cgccgccgat
     3241 gccgcaggcg ccagcgggtt catcaatgcg ctaccgcagg ggttcaacac ccgactgacc
     3301 gaacgcggaa gcaacctctc cggcggccaa cgccagcgta ttgcgctagc ccgggcactg
     3361 attaccgcgc cggaactgct gattctcgat gacaccacct cggcggtcga tgccggtact
     3421 gaagcggaaa ttaacacggc tcttggtcgt tatgccgata atgagcatat gctgctggtg
     3481 attgcacgcc gccgttcaac actgcagtta gtcgatcgga tcgtcgtgct ggataaaggc
     3541 cgcgtcgtgg atatcggtac ccaggcggag ctggatgcaa ggtgtccgac gtttcgctcg
     3601 ctgatgagcg gcgaggggga ttttctcgcc cttgccccgg cagaacaacg tacgctatgg
     3661 ccaacaacgc aggcggtaaa atccgacgac gcgcatgagc gccagacaac cgccggaaaa
     3721 ggttttgtcg accggatgac gcgcgttccg gaacgcgccg tacagatggc gctggcaggc
     3781 cacgggagtc aagtctcatc gctgctgacg ccagtagcct ggatgttcgt catcgccgcc
     3841 ctgcttatcg cgcttgattc cgccgcaggc gttggcgtgc tggtgctttt gcagcgcggt
     3901 attgactcag gcgttgccgc aggggatatg tcgactattg gcatatgcgc cctgctcgcg
     3961 ctgtgcctgg tggcgatcgg ttggtgctgc tatgcgctgc aaacgatctt cgccgcccgc
     4021 gcggcagagt cggtacagca tacggtacgc ttacgcagct tcagccacct gctacgcctg
     4081 agtcttccct ggcacgagaa gcacatcgac tcgcgtctta ctcgcatgac cgtcgacgtt
     4141 gattcactcg cccgatttct gcaaaacggt cttgccagcg cggccaccag catcgtgacg
     4201 atggtcgcta tcgccgcggc aatgttctgg cttgacccca ttcttgcgtt aacggcatta
     4261 agcgccgtac ctgtagtgat actggcgacg tggatttacc gccgtttgag ctcgcctgct
     4321 tacgcccagg cacggctgga aattggtaag gtgaacagta cgcttcagga aaaggtctcc
     4381 ggtatgcggg tagtgcagtc acacggtcaa cagaagcagg aagccgccag gctacgggcg
     4441 ttatcagaca acttccgcgc cacccgcgtg cgggcgcaaa aataccttgc tgtctatttt
     4501 ccgttcctga ccttctgcac cgaggctgcc tatgccgccg tgcttttaat cggagcgacc
     4561 cgggtcgccg aaggcgaaat gacgcccggg atactggcgg cgttcttcct gctattggga
     4621 caattttatg gcccggtaca gcagttgtca ggcattgttg attcctggca gcaggcgacc
     4681 gccagcggca aacatatcaa tgcgctattg gcgactgagg aaacggagaa tattgaaccg
     4741 tcctccataa cgcctggcac tggcggcgcg ctacgtctgg aggcattgac attccgctat
     4801 cccgaaaaaa cgcaacctgt gcttgataat ctctcgctca ccattccgcc aggaacggta
     4861 gtcgcggtgg tcggacgtag cggcgccggc aaatcgacgc tgatcaagct gctggccggg
     4921 ctctactctc ccggcagcgg gcaaatccgt gtcggtgagc gcctaattga tgccgcgtcg
     4981 cttagtgatt atcgtcgcca gacggggctg gtcacccagg atgtcgcatt atttagcggc
     5041 gatattgccg aaaatatccg ctattcgcgg ccagacagca gcgacacgga ggtggagatc
     5101 gcggcgcgac aggcgggact ctttgaaact gtgcaacatc tgccgctggg gtttcgtact
     5161 ccggtcaata acggcggcac ggatctgtcc gcgggccagc gtcagttgat tgccctcgcg
     5221 cgcgcccaac tggcacaggc gcacattctg ctgctcgacg aggcgacagc acgtatcgac
     5281 cgcagcgccg aggagcgctt aataacctcg cttaccggag tgacgcatac cgagaaacgc
     5341 atcgcgctta tcgtcgcgca ccgactgacc accgctcgcc gctgcgatgt tattgtcgta
     5401 atcgataaag gatgtatcgc tgaatatggc agccatgagc agttgatagc ggctcatggc
     5461 ctgtatgctc gtctgtggcg ggccagcgtc ggccagacac gcgatacgca aggagaggtc
     5521 gtaggatagt ttttatcgcc acgatttacg caaaagaaag cccgcaagcg gctgttcctg
     5581 taacagccgc tttagctatt gatactgacc gaaatataaa cgagatggaa tacaaagaat
     5641 gagactgagc ccgcccgtcg ctcctgtcgc tatacagacc gctacgcgcc ttcgccgtca
     5701 actcgccgcc ggaagccagg ttgacgcttc tcacttctgg cgagaagcaa actcgctcgc
     5761 gctgccgctg gtgacagcca ttaacggcgc agacgatgaa cgggaagtca ccttcctgtg
     5821 gcgtgccgcc tctcctctgc ggggggttta tgttcgcctg aaccgtgtca ccgataaaga
     5881 taacgtggcg aaaggtatga tgacgcaact gcccacaacg gatatctggc atctgacgct
     5941 tcgcttaccg gcgtcctact gcggttccta tacgatggtc gaaataccac cgaaaacccc
     6001 ggacgagacg gtgttgcagc ttggaagccg tttcgcctcc cttgtcggga aggcggaccc
     6061 actgaacagc acgccgggaa taaatgttcg gggcaatgcg caggagtccg ttctggcgtt
     6121 ggatcatgcc ccggcacagg aggagtggtc aggctgtcgc gcttacgccg ggcagctttt
     6181 cacctcagaa catcggctcg ccggacaacg tcgccgtgtg cggctgtatc ttcctgacgt
     6241 tcctgtcgaa caaccgctgg gcttgctggt actcacggat ggcgagatct ggttcgacca
     6301 tcttggggta agcgccgcca ttgacgccgc catccgcagc ggacgcatcg cgccggtggc
     6361 cgtactcggc gttgataata tcaatgcgcg tgaacgcgtc gcaatcctcg gcggtcgccg
     6421 cgagctggtg ctcgacattg ccgaacgcct gctgccaacc cttcgcgcca aatacccgga
     6481 acgacagtgg gcggaccgta cacaaacggt gctggcaggg caaagcctcg gcggcgtgac
     6541 cgcgctgatg gcggcccgcc acgcgccaga gagcttcggc ctggtgctga gccactcccc
     6601 ctcaatgtgg tggacgccgg acaaccgcaa tcgcccgccc catttcagcg cagaagagcg
     6661 ctcatgggtc agcgaacatg tgttatccgc gccctcgcca gccgtacgta cgcatctgtg
     6721 cgtgggatcg ctggaaggtt cgacggtccc gcaggtcaaa cagttgcatg aaaaattgcg
     6781 cgccgccggt gttgaaagcc attgctgcgt gtacaccggc ggtcacgatt atgcctggtg
     6841 gcgcggcgcg ctgattgacg gattacgtct actgccccga taaaacttca cctgccaaaa
     6901 aggaataaca tccgatgtat ggtcgccagt accacaacaa gtgctatcgc gtggcgctat
     6961 ttttagtgag tttttgtttt agcgcgctga gttatgcgca gccggatatg cagccattag
     7021 ggccgaatat ggctgataaa ggttcgggat attaccattt tagggtcaat gactttcaat
     7081 ctgccgatgg cgcaagacat taccgggtat ggaccgctat tcccaataaa gccgccccgc
     7141 cgtcgggtta tcctgtctta tatatgctgg acggcaacgc agtgatggac aggctgccgg
     7201 agacgctgct caaacaactg gcagaccact cgccgccggt gattgtggcg attggctatc
     7261 agactaacct gccgtttgat cttaacggca gagcttatga ctatacgccg gcgccgggaa
     7321 tcgatcgcga tgacagtgaa aataacccgc gttttcatcg taagaccggc ggcgggccag
     7381 cgttccgcca gctactggag agacatatcg cgccgcaggt ggaacaagga ataaccatca
     7441 accccgaacg gcgcgggata tggggacatt cttatggcgg cctgttcgtt ttggactcct
     7501 ggctgtcgtc atccttcttt catatctatt acagcgccag cccgtcactc agcagggata
     7561 actttgccct gttgaatcgc cttacggcag tgaagccgtc gccgttctgc cataaaaaac
     7621 tcatcataat ggaaggttca gcgtcgaatg gggatagcag gcaacgccag atggccgagc
     7681 tcctgcaaaa agttcaggag accgtgagaa cgcttgagaa caacggcgtt aacgcggccc
     7741 tgcagcatta cccgggcctg ggccacgggc ccatgtttaa cgcctctttt cgtagtgcat
     7801 tgctgggtat cagtcgcgaa ccggcaagct aagaaccacg ctgccattaa cccgtcgcca
     7861 gaatatgccc gccagcggcg ggcataaccc atcaaaacga ggccgtcaca ccggcataat
     7921 aagcccgacc cggttcgtta taggtatttg ccccttcggc ggagcgatag atctgtttat
     7981 cgaagatatt gctgataccg acattaagac gcaggttctt attgatatcg tagttaacgt
     8041 tagcgccgac cagtgagtaa gcccccagcg ctttcccgga caatcctttg gtctcttcac
     8101 tacgcgactc cgcatgtgtt cgcggttttt gcttgccgta taacgtccag ttgacgttag
     8161 cggagagcgc gttggtgata gtccagtcga ggaaggtatt caccgtatat ttcgggatta
     8221 tcgataaggg attaccggta tctttttgct cagaagtgat catataagtc gcattggtat
     8281 tccagttcag acggtccggc atcagcggaa cagccatgct ggcttcaata ccttcaatca
     8341 gcgctttacc gccgttctgc cactgcaata cataagcgcc agatgcgctt ctgccaataa
     8401 tctgatcacc tgcgacaatc ttattctgat aatcgttacg gaaatacgtt acgcttgcgt
     8461 gataatcgtc tacggtaaat tccagcccaa tctctttatt gatactaatt tcaggatcga
     8521 ggttcttatt accaaccagg taacagccgc ccgacgtaat atcttttgga caaccgttgc
     8581 ctttcgaata gagtaaatac ccctcactgg tttgatacaa gttcggtgcc ttaaaggccc
     8641 gggcaatacc ggctttcacc ttgacgaatt cacctaactc ctgggaaagg ttaagactgg
     8701 gactaaaatt actcccggat tcgctcaaat agtcaaaacg cagacccgga ataatattgg
     8761 taccggccat gggttcgata ttatcttcaa cgtacagcgc actgatttcc gatttatttt
     8821 tactgctacg gttagccgcc gaaccgggaa tcccggcgat attgctatcc ttaaccgtca
     8881 gactggtaga ggaaggatcg ttcagctcat cgcggttcca ctccgcgccg acggtgagcg
     8941 tttgctcaaa tagccatatc accgggacat tcacctcgcc gctggtgcga tacgaggtca
     9001 ggcggttagt ggtgaacgtc tggtcgttgg taatacgccc ctcgccgccg ccggagagtc
     9061 cctcattcat gcgggtatta tcggtttttt catagtagaa ccccaggcgg ctttgccccc
     9121 agccccagat gccgttatga gttagaccgt aattctgccg gtacaggcga ttggtctccc
     9181 gcccggactg cgccagactt ttggtaaccg cgtttgaatt actgttttgc gtatcgccgg
     9241 catagatatt cccctgccga ctgtatcccg cttcaaaatc aaggatttgc tgcggggtca
     9301 ttttccatga gaagacgcta ttaatatctt tattggtgac cccctcccgt ccggcggcat
     9361 ttttggtacc ggcggaggag ttaatatccc agctgtcggc atcggttctg ttgagattac
     9421 cgtacaggcg catcgtcaac gtatcaccag ccaacgggcc gctaaggcta aagttacccc
     9481 gccgggtgtc accttctttg ctgctttccg ggtagttggt ataaagcgac agcgagccat
     9541 gccagtcgtt agtggggcgt ttggtgatga tgttcaccac cccgcctgcg gcaccggagc
     9601 catagcgcgc ggcggcgggc ccacggatca tttcaatacg ttctaccatc tccggcggca
     9661 cccagttcgt atcgccacgg gtgtcgcgtt ctccgcgcca gctatagcga accgaatttc
     9721 gcgacgtcac cggcacgccg tcaatcagca ctaaggtatt ttccggcccc ataccacgaa
     9781 tatcaatttg tcggttattt ccgcgcgtcc ccgaggcgct attgctggta agattaaccc
     9841 caggcatctt acgaataata tcggcaagat cgttaacggg aggattcttc tgaatatcgt
     9901 cacgagtaat aatcgaaacg cccggctgtt gctttaatac ttgctcggca gtggattcaa
     9961 ccactatcgt ttcgccgttg tcgtctgtag attctgctgc tgataatgga ctattaatcc
    10021 ctgtagaaac cacggttatt aaccagatga acttcttaac tctcataccc attccctaaa
    10081 taatgtctaa agtagcgctg ttgccctcaa gctcacatcc ttgccaggtt acggctatat
    10141 agtaattatt atcatatgct aatgataata attatcattc aattaagaaa aaggcaatct
    10201 ttcgaccgca aaatctggtc ataagaaaac agaaacggga ttttgcaata tgactctctg
    10261 tccgggctcc gctttgccaa taaatccggg aagggtggca gaatgcgcct actgagcgga
    10321 ggttttacaa aacaggaata gataaaataa aactattttt caaagcgtta atga
//
LOCUS       DAJVSD010000160        10347 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.160, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000160 DAJVSD010000000
VERSION     DAJVSD010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10347
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.160"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..927)
                     /gene="dusC"
                     /locus_tag="OQP62_003133"
     CDS             complement(<1..927)
                     /gene="dusC"
                     /locus_tag="OQP62_003133"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(16) synthase DusC"
                     /protein_id="HCS1722614.1"
                     /translation="MRVLLAPMEGVLDALVRELLTEVNDYDLCITEFVRVVDQLLPVK
                     VFHRICPELLHASRTPSGTPVRIQLLGQHPQWLAENAARATALGSYGVDLNCGCPSKV
                     VNGSGGGATLLTDPELIYQGAKAMRAAVPSHLPVTVKVRLGWDSGDRKFEIADAVQQA
                     GASELVVHGRTKAQGYRAEHIDWQAIGEIRQRLTIPVIANGEIWDWQSAQACMATSGC
                     DAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVTLLQKYTRLEKQGDTGLYHVARIKQW
                     LGYLRKEYIEATELFQSIRALNRSSEIARVIQA"
     gene            complement(1036..2229)
                     /locus_tag="OQP62_003134"
     CDS             complement(1036..2229)
                     /locus_tag="OQP62_003134"
                     /EC_number="1.14.13.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybenzoate 6-monooxygenase"
                     /protein_id="HCS1722615.1"
                     /translation="MTHVTSAIIVGGGIGGAATALSLARQGIKVMLLEKAHEIGEIGA
                     GIQLGPNAFSALDSLGVGDVARQRAVFTDHITMMDAVNAEEVVRIETGQAFRDHFGGP
                     YAVIHRVDIHATVWEAVLTHPGVEYRTSTHIVDIRQTPDDVTVFDEQGNSWTADILVG
                     CDGVKSVVRQSLLGDAPRVTGHVVYRAVIDCDDMPDDLRINAPVLWAGPHCHLVHYPL
                     RGGQQYNLVVTFHSRQQEEWGVKDGSKEEVLSYFAGIHPRPRQMLDKPTSWRRWSTAD
                     REPVAKWGTERITLVGDAAHPVAQYMAQGACMALEDAVTLGKALERCDGDAQQAFALY
                     ESVRIPRTARIVWSTREMGRLYHAAGVERQVRNLLWKGKSQEAFYRGIEWLYGWKEDN
                     CLEPR"
     gene            complement(2244..2888)
                     /gene="maiA"
                     /locus_tag="OQP62_003135"
     CDS             complement(2244..2888)
                     /gene="maiA"
                     /locus_tag="OQP62_003135"
                     /EC_number="5.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maleylacetoacetate isomerase"
                     /protein_id="HCS1722616.1"
                     /translation="MKLYSFFNSSASYRVRIALALKGIDYQTVGVNIRIGQQNALAYR
                     RMNPVGLVPTLVTDDGESLGQSLAIVDWLDRHFPQTPLLPTSDPARSQALEIVYAIAC
                     DIHPINNMRVLRYLTDELKVSEEDKKRWYAHWIQQGLSAVEQLLRKSQSGRFCVGDAP
                     GLADCCLIPQWANALRMGCDLSGYPRCKAVYDACVQLPAFIAAAPENQQDKIPA"
     gene            complement(2897..3598)
                     /locus_tag="OQP62_003136"
     CDS             complement(2897..3598)
                     /locus_tag="OQP62_003136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HCS1722617.1"
                     /translation="MTKYVFQPQAPVTVPVAGSDEQFPVRRVYCVGRNYAAHAREMGF
                     DPDREPPFFFCKPADAVVPVAAGDTLELPYPAQTDNYHYEIELVVAIGKKGSDIPLEK
                     AHEYVWGYATGLDMTRRDRQMEMRQMGRPWEIGKAFDLSAPIAPLHKAAETHNVDNAP
                     IWLQVNGEDHQRSDIRHLIWSVNETISYLSGFFELQPGDLIFTGTPEGVGAVVKGDVI
                     TGNVEGLTPIAVKIV"
     gene            complement(3614..4651)
                     /gene="gtdA"
                     /locus_tag="OQP62_003137"
     CDS             complement(3614..4651)
                     /gene="gtdA"
                     /locus_tag="OQP62_003137"
                     /EC_number="1.13.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gentisate 1,2-dioxygenase"
                     /protein_id="HCS1722618.1"
                     /translation="MSEINQNVKDSRQQYYQHISGQNLTPLWESLHHLVPQTPNANCA
                     PAYWNYQEIRPLLMESGNVIGAKEAIRRVLVLENPALRGQSSITATLYAGLQLILPGE
                     VAPSHRHNQSALRFIVEGKGAFTAVDGERTPMHTGDFILTPQWRWHDHGNPGSEPVVW
                     LDGLDLPLVNLLGCGFAEDYPEDQQPVTRKEGDYLPRYAANMLPLRHQRGNSSPIFNY
                     RYDRSREALHDLTRMGDPDEWEGYKLRYVNPVTGGYPMPSMGAFLQLLPKGFASRVAR
                     STDSTIYHVVEGAGQVTIGNETFHFSAKDIFVAPTWHEVSFRSSEDTVLFSFSDKPVQ
                     EALGLFREARY"
     gene            complement(4663..6021)
                     /locus_tag="OQP62_003138"
     CDS             complement(4663..6021)
                     /locus_tag="OQP62_003138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid/H+ symport family MFS transporter"
                     /protein_id="HCS1722619.1"
                     /translation="MTQRRDLQALIDAAPVGKMQWRVIICCFLVVMLDGFDTAAIGFI
                     APDIRTHWQLSASELAPLFGAGLLGLTAGALLCGPLADRFGRKRVIELCVALFGALSL
                     LSAFSPDIETLVLLRFLTGLGLGGAMPNTITMTSEYLPARRRGALVTLMFCGFTLGSA
                     MGGIVSAQLVPLIGWHGILALGGILPLMLFFGLLFALPESPRWQVRRQLPQAVVARTV
                     SAITGERYHDTQFFLHETAAVAKGSIRQLFAGRQLVITLMLWVVFFMSLLIIYLLSSW
                     MPTLLNHRGIDLQQASWVTAAFQVGGTLGALLLGVLMDRLNPFRVLAVSYALGAVCIV
                     MIGLSENGLWLMALAIFGTGIGISGSQVGLNALTATLYPTQSRATGVSWSNAIGRCGA
                     IVGSLSGGMMMALNFSFDTLFFVIAIPAAISAVMLTLLTVVVRLSISVPDDLPRASVV
                     NE"
     gene            6147..7055
                     /locus_tag="OQP62_003139"
     CDS             6147..7055
                     /locus_tag="OQP62_003139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1722620.1"
                     /translation="MANWAQKLKLHHLQTLVALGEQGNLTHVARMMNISQPALSKWLS
                     QLEDEIGITLFERHSKGLRPSEGGKLLLQHAQRLINDLERSQYEIARFKQGGLVGSLK
                     IGCSPVATDCVSQAILSLLNEMPTPHLNIEEKVMTPLLHDLLAGQVDVVVGRVGGRAL
                     QLPLNYQVLYTEPVCFVARPHHPLAARAQIAWSDLAHWRWIVWPTGTPIRISIDNALV
                     DNGVMLPENTIESASMNVSTNLLQSSDMISILSLRLAQRYASQGQLAILNLPKIEQKG
                     SVGMFWRKNETPSLALSRFLYFLAQV"
     gene            7187..7585
                     /locus_tag="OQP62_003140"
     CDS             7187..7585
                     /locus_tag="OQP62_003140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HCS1722621.1"
                     /translation="MSKSLNIIWQYIRAFVLIYACLYAGIFLASLLPITIPGSIIGML
                     ILFVLLALQILPAKWVNPGCYVLIRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAI
                     STLVVFVVVSWSSHLIHGERKVVGQKGTKK"
     gene            7582..8277
                     /locus_tag="OQP62_003141"
     CDS             7582..8277
                     /locus_tag="OQP62_003141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidB/LrgB family autolysis modulator"
                     /protein_id="HCS1722622.1"
                     /translation="MMTYIWWSLPLTLAVFFAARRLAAHFKMPLLNPLLVAMVVIIPF
                     LLLTGIPYEHYFKGSEVLNDLLQPAVVALAYPLYEQLHQIRARWKSIISICFVGSLVA
                     MITGTSVALLMGATPEIAASVLPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAV
                     FGHTLLNAMHIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVICGIITSLV
                     APFLFPLILAVMR"
     gene            8431..9315
                     /gene="cdd"
                     /locus_tag="OQP62_003142"
     CDS             8431..9315
                     /gene="cdd"
                     /locus_tag="OQP62_003142"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HCS1722623.1"
                     /translation="MHPRFQTAFAQLADNLQSALAPILADHHFPAMLTAEQVSTLKNT
                     AGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANMEFLGATMQQTVH
                     AEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPGRAPHTLRDY
                     LPDAFGPKDLEIKTLLMDEQDHGFTLTGNTLTQAAITAANKSHMPYSHSPSGVALECK
                     DGRIFTGSYAENAAFNPTLPPLQGALNLLSLNGYDYADIQRAILAEKGDAALIQWDAT
                     AATLKALGCHNIDRVLLG"
     gene            9492..10211
                     /gene="sanA"
                     /locus_tag="OQP62_003143"
     CDS             9492..10211
                     /gene="sanA"
                     /locus_tag="OQP62_003143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane permeability protein SanA"
                     /protein_id="HCS1722624.1"
                     /translation="MLKRVFYSLLVLVGLLLLTVLGLDRWMSWKTAPYIYDELQDLPY
                     RQVGVVLGTAKYYRKGVINQYYRYRIQGALNAYNSGKVNYLLLSGDNALQSYNEPMTM
                     RKDLIAAGVDPADIVLDYAGFRTLDSIVRTRKVFDINDFIIITQRFHCERALFIALHM
                     GIQAQCYAVPSPKNMLTVRLREFGARFSALADLYIFKREPRFLGPLVPIPTQHQVPND
                     AQGYPAVTPEQLLELEKKKGK"
     gene            10208..>10347
                     /locus_tag="OQP62_003144"
     CDS             10208..>10347
                     /locus_tag="OQP62_003144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2542 family protein"
                     /protein_id="HCS1722625.1"
                     /translation="MIMDVQTIFVILAFLLLPLFCFREAWKGWRTGAVDKVVKNARKP
                     VYV"
BASE COUNT         2300 a         3001 c         2736 g         2310 t
ORIGIN      
        1 agcctgaatc acccgcgcaa tctcggacga acggtttaac gcccgaatcg actgaaagag
       61 ttctgtcgcc tcaatatatt ccttacgtaa atatcccaac cactgtttaa tacgcgcgac
      121 atggtataaa ccggtatcgc cctgcttttc cagtcgggta tatttttgta ataacgttac
      181 cacttccggc cacggcatac gcggttcgtt atacttcacc acccggctca ggttaggaat
      241 atttaacgcc ccgcggccaa tcatcaccgc atcgcagccg ctggtcgcca tacatgcctg
      301 cgcgctctgc cagtcccaga tttcgccatt agcgataacc ggaatagtca gacgctggcg
      361 tatttcgccg atcgcctgcc agtcgatatg ctcggcgcgg tagccctgcg ctttggtacg
      421 gccatgcacc accagttcac tggcgccggc ctgctgcacc gcatcggcga tttcaaattt
      481 tctatcgccg ctatcccagc cgagacgcac ttttaccgtc accggcagat gcgacggtac
      541 cgcggcccgc atcgctttcg cgccctgata gatgagttcg ggatctgtga gcaatgtcgc
      601 gccgccgccg ctgccgttca ccacttttga cggacagccg cagttcaggt ccacgccata
      661 cgatcccaac gccgtcgccc gcgcggcgtt ttccgccagc cactgcggat gctggcccag
      721 aagctgaata cgcaccggcg tgccggacgg cgtgcggctg gcgtgaagca actccgggca
      781 gatgcgatga aacactttta ccggcagcag ctgatccacc acgcgcacaa attcggtgat
      841 gcagagatcg taatcattca cttcggtcag cagctcgcgc actaacgcgt cgagcacgcc
      901 ttccatcggc gccagtaaaa cacgcatatc ggtatccaca gcaaaaaaag aggcgctatc
      961 ataacgcctc tctgcgatga gcaaaacttt ttgccgggtg gcggcgcaaa cgccacgcta
     1021 cgtcacgtaa ggcgctcaac gcggctcaag acagttatct tctttccagc cgtacagcca
     1081 ttcgataccg cgataaaacg cctcctgcga tttccctttc cacagcagat tacgcacctg
     1141 acgctccacc ccggcggcgt gatagagacg ccccatctcg cgggtagacc agacgatacg
     1201 cgccgtgcgg ggaatacgca ccgactcata cagcgcaaat gcctgctgcg cgtcgccgtc
     1261 gcagcgttcc agcgctttgc ctagcgtgac ggcgtcttcc agcgccatac aggcgccctg
     1321 ggccatatat tgcgccaccg gatgcgcggc gtcgcccacc agagtgatac gctcggttcc
     1381 ccattttgcg accggctcgc gatcggcggt cgaccagcgg cgccaggagg tcggcttatc
     1441 cagcatctga cgcgggcggg gatgaatacc ggcaaaataa gagagcacct cttctttact
     1501 gccgtctttc acgccccact cttcttgctg gcggctgtgg aatgtcacca ccagattgta
     1561 ctgttggcct ccgcgcagcg gataatggac caggtgacaa tgcgggcctg cccacagcac
     1621 cggtgcgtta atacgtaaat cgtccggcat atcgtcgcaa tcaatcaccg cccgatagac
     1681 tacatgcccc gttacgcgcg gcgcgtcgcc gagtaaactt tgccgcacga ccgatttaac
     1741 gccgtcgcag cccacgagaa tatccgccgt ccagctattt ccctgctcat caaacaccgt
     1801 aacgtcatcc ggcgtctggc ggatatcgac aatatgggtc gaggtacgat actccacgcc
     1861 agggtgcgtc agcaccgctt cccataccgt tgcatgaata tctacccggt gaattaccgc
     1921 atacggcccg ccaaaatggt cgcggaacgc ctgcccggtt tcaatgcgta ccacttcttc
     1981 ggcattcacg gcatccatca tggtaatgtg atcggtaaac accgcacgct ggcgggcaac
     2041 atcgcccaca ccgagactat ccagcgccga aaaagcgttc ggcccaagct gaatacccgc
     2101 gccaatctcg ccaatttcgt gcgctttttc cagcagcatg acttttattc cctggcgcgc
     2161 cagcgacagc gcggtcgccg cgccgccgat tccgccacct acaataattg cgcttgtcac
     2221 gtgagtcatg gtcattctcc ttttcaggcc gggattttat cttgttgatt ttccggcgcg
     2281 gcggcaataa acgccggtag ctgtacgcag gcgtcataaa cggctttaca gcgcggatag
     2341 cctgataaat cgcagcccat cctgagcgca ttcgcccact gaggaatcag gcagcagtcc
     2401 gcaaggcctg gcgcgtcgcc cacgcagaat cgtccggact gacttttacg caatagctgc
     2461 tctaccgcgc ttaacccttg ctgtatccag tgggcgtacc agcgtttttt atcctcttcg
     2521 ctaaccttca gctcatcggt caggtagcgc aacacgcgca tgttattgat cgggtgtata
     2581 tcgcaggcga tagcgtagac aatttccagc gcctggctgc gcgccgggtc gctcgtcggc
     2641 agcagcggcg tttgcggaaa atgtcggtcc agccagtcga cgatggccag cgattgcccc
     2701 aacgattcgc cgtcatcagt gactagcgtc ggcaccaggc ctaccggatt catccgtcgg
     2761 taggccagcg cattctgctg gccgatacga atattgacgc ccactgtctg gtaatcaatc
     2821 ccctttaacg ccagcgcaat acgtacacga taagacgccg aactattaaa gaaactgtac
     2881 agcttcatcg ttcacctcag acaattttca cagcaatcgg cgtcagacct tctacgttcc
     2941 cggtgatgac atcccctttc accactgcgc ccaccccctc tggcgtaccg gtgaaaatca
     3001 aatcgcctgg ctgcaattca aaaaagccgg acaaatagct gatggtttca ttcaccgacc
     3061 aaatcagatg acgaatatcg ctgcgctgat ggtcttcgcc gttaacctgt agccaaatag
     3121 gggcgttatc cacattatgc gtttcagcgg ctttgtgtaa tggcgcaatg ggcgcggaga
     3181 gatcgaacgc tttgccaatt tcccacgggc gtcccatctg acgcatttcc atctgacgat
     3241 cgcgacgcgt catgtccaga ccggtggcgt atccccagac atattcatgg gctttttcta
     3301 gcgggatatc gctccccttt ttaccaatcg ccaccaccag ctcaatttca taatggtagt
     3361 tatcggtctg cgccggatac ggcagttcca gggtatcccc cgccgctacc gggacgacag
     3421 cgtccgctgg tttacaaaag aagaacggcg gttcgcgatc gggatcaaaa cccatttcac
     3481 gggcatgggc ggcatagttg cgacccacgc agtaaacgcg acgtaccgga aactgctcat
     3541 cactgcccgc cacgggtact gtcaccgggg cctgcggctg gaatacatat ttggtcatgt
     3601 tctctctccc taattaataa cgtgcttcgc ggaacagccc cagggcttcc tgaaccggct
     3661 tgtccgaaaa gctgaataac accgtgtctt cgctgctgcg aaacgacacc tcatgccagg
     3721 tcggcgccac aaaaatgtct tttgcggaaa aatgaaaagt ttcgttgccg atagtgacct
     3781 gccctgcccc ttcaacgacg tggtagatag tgctgtcggt gctccgcgcc acacgcgagg
     3841 caaagccttt tggcagcagt tgcaggaacg cgcccatcga cggcatcgga taaccgccag
     3901 tgacgggatt aacgtaacgc agcttgtagc cttcccactc atccggatcg cccatacggg
     3961 tcagatcgtg caacgcctcg cgactgcggt cgtaacggta gttgaaaatc ggcgacgagt
     4021 tcccgcgctg gtggcgcagc ggcagcatat tcgctgcata gcgcggcaga taatcgccct
     4081 cttttcgcgt caccggctgc tgatcttcgg gatagtcttc cgcaaaacca cagcccagga
     4141 gattgactaa cggcagatcc agaccatcca gccataccac cggctctgat cccggattac
     4201 catgatcgtg ccagcgccac tgcggcgtca ggataaaatc gccggtatgc attggcgtgc
     4261 gctcgccgtc caccgcggta aatgcgcctt taccttcgac gataaaacgc agcgccgact
     4321 ggttatggcg atgactcggc gcgacttcgc cgggcaggat cagctgtaaa ccagcgtata
     4381 aggtcgccgt gatcgacgac tgaccgcgca atgccggatt ttccagcacc agcacccggc
     4441 ggatcgcctc tttcgcgcca atgacattgc cgctttccat cagtagcgga cgaatttcct
     4501 gataattcca gtaggccggc gcgcagttgg cgtttggcgt ctgcggtacc aggtgatgta
     4561 acgattccca cagcggcgtc agattctgcc cggaaatatg ctggtaatac tgctgacggc
     4621 tatcttttac gttctgattt atttcagaca tggagattct ccttattcgt ttacgacgct
     4681 ggcacgcggc aggtcgtcag gtacagaaat cgaaaggcgg acaaccactg tcagcagggt
     4741 aagcattacc gcgctgatag ccgccggaat agcaatgaca aaaaacaacg tatcgaaaga
     4801 gaaattgagg gccatcatca tgccgccgga gagcgaaccg acaatcgccc cgcagcgtcc
     4861 aatggcgttc gaccagctca cgcccgtcgc ccggctttgg gtggggtaca gcgtcgccgt
     4921 cagagcattc agcccgacct gggaaccgct aataccgatg ccggtaccaa aaatcgccag
     4981 cgccatcagc caaaggccgt tttcgctcag gcctatcatg acaatgcaaa ctgcgcccag
     5041 cgcatagctc accgccagta cccggaacgg gttaagccgg tccatcaaca cgccgagtaa
     5101 cagcgcgcca agcgtgccgc ccacctggaa tgcggcagtc acccacgacg cctgttgcag
     5161 atcaatacct cgatggttaa gtaacgtcgg catccagctg gaaagcagat agataatgag
     5221 caggctcata aagaacacca cccataacat cagggtaatg acaagctgtc gcccggcaaa
     5281 aagctggcga atactgcctt tggcgacggc tgccgtctca tgcagaaaga attgcgtatc
     5341 gtgatagcgc tcgccggtaa tggcgctgac cgtccgggcg acaacggctt gcggtagttg
     5401 gcgacgtacc tgccagcggg gagattccgg cagcgcgaac agcaggccga aaaacagcat
     5461 caaaggcaag atgccgccta gcgccagaat tccgtgccag ccaatcagcg gcaccagttg
     5521 cgcgctcaca atcccgccca tcgccgaccc cagggtaaaa ccgcagaaca tcagcgtgac
     5581 cagcgctccg cgtcgacgag cgggaaggta ttccgacgtc atggtgatgg tattcggcat
     5641 cgctccgccc agtcccagac cggttaagaa gcgcagcaac accagggttt ctatatccgg
     5701 cgagaaagcg gaaagcaggc tcaatgcgcc gaatagcgcc acgcaaagct caatgacccg
     5761 cttgcggcca aagcgatccg ccagcggccc gcatagcagc gcgccggccg taagccccag
     5821 cagccctgcg ccaaacagcg gcgcaagttc gctggcgctt agctgccagt gagtacgaat
     5881 atccggggcg atgaagccaa tcgcggcggt gtcgaaaccg tcgagcataa ccaccagaaa
     5941 acagcagatg ataacgcgcc actgcatttt gccgacgggc gcggcatcaa taagggcttg
     6001 tagatcacgt cgttgagtca tagctaatgc ctcagtgcag ggagatagat gttgttttta
     6061 tgtttgctat gttacgagtt tgtagagtga gcgataaaat gtacaatggc ttttcaggca
     6121 gagacataac ctggaggtta tagcgaatgg cgaactgggc gcagaaattg aaattacatc
     6181 acctgcaaac gctggttgcg ctgggcgaac agggcaacct gacgcacgtc gcccggatga
     6241 tgaatatctc ccagccggcg ctatcgaagt ggctatctca actcgaagat gagataggca
     6301 tcacgctttt tgagcgccac agtaaaggac tacgcccctc ggaaggcggt aaattactgc
     6361 tccagcacgc ccagcgccta attaacgatc tggagcgttc acagtatgaa atcgcccgtt
     6421 tcaagcaggg cggcctggtt ggcagcctga agatcggctg ttcgcccgtg gcgactgact
     6481 gcgtatcaca ggcgattctg agcctgctta acgaaatgcc gacgccgcat ctgaatattg
     6541 aagagaaggt aatgacgccg ctgctgcacg atttgcttgc cggtcaggtg gatgtggtgg
     6601 tagggcgtgt cggcggccgc gccctgcaac tgccgcttaa ttatcaggta ctttataccg
     6661 agccggtctg ctttgtggcg cgtccgcacc atccgctggc cgcgcgagcg cagatcgcct
     6721 ggagcgatct ggcacactgg cggtggatag tctggccaac cggcacccct attcgcatca
     6781 gtattgataa cgccctcgtc gataatggcg tcatgctccc ggaaaacacc attgaatcgg
     6841 cgtcaatgaa cgtcagcacc aatttgctgc aaagcagcga tatgatctct attctttctt
     6901 tacggctggc gcaacgctat gccagccagg ggcaactggc gattttaaac ttgccaaaaa
     6961 ttgagcaaaa aggcagcgta gggatgttct ggcgtaagaa tgagacgccg tctttggccc
     7021 tgagtcgctt tttgtatttt ttagcccagg tttaacgccg ccgaccaggg gcattgcccg
     7081 atgttcctgc tgtctatacc cactatgcta agaattcatg atgtgatcgg tagcacgttt
     7141 taacgtttaa ttgtatgatg aatccatctc atcaagggct ttaaacatga gtaagtcact
     7201 gaatattatc tggcaatata tacgcgcttt tgtattgatt tatgcctgtt tgtacgcagg
     7261 catttttctt gcatcactgc ttcctatcac tattcccggc agcattatcg ggatgttaat
     7321 tctgtttgta ttgctggcgc tgcaaattct gccggcaaag tgggttaacc ccggctgtta
     7381 tgtgctgatt cgttatatgg cgttgctgtt tgtgccaatt ggcgttgggg tcatgcaata
     7441 ttttgactta ctgcgcgcgc aattcggccc ggtggtggtc tcttgcgcta tcagtacgct
     7501 ggtcgttttt gtggtcgtaa gctggagttc acatctgata cacggtgagc gtaaagtggt
     7561 tgggcagaag ggaacgaaaa aatgatgaca tatatctggt ggtcgttacc gctgacgctg
     7621 gcggtatttt tcgccgcccg cagactggcg gcgcatttta aaatgccgtt gctgaatccg
     7681 ctgctggtgg caatggtagt cattattcct tttctgttgc tgaccggtat tccctacgag
     7741 cactacttca aaggcagcga agtacttaac gatctgctgc aaccggcggt ggtggcgctg
     7801 gcctatcccc tttatgaaca gttgcaccag attcgcgcgc gttggaaatc cattattagc
     7861 atctgttttg tcggcagtct ggtagcgatg attaccggaa catccgttgc cttgctgatg
     7921 ggcgcaacgc ctgaaatcgc ggcatcggta ctgcctaaat ccgtgactac gcctatcgcg
     7981 atggcggtgg gcggcagcat cggcggcatc cccgcgatca gcgcggtatg cgtaattttt
     8041 gtcggtattc tgggcgcggt gtttggccac acgctgttaa acgcgatgca catccgtact
     8101 aaagccgcac gcgggctggc aatggggacc gcctcacatg cgctcggtac tgcgcgctgc
     8161 gccgagctgg attaccagga aggcgcgttt agctccctgg cgctggtgat ctgcggcatt
     8221 attacctcgc tggtagcgcc ctttttgttt ccgctcattc tggcggtaat gcgctaacga
     8281 cgggacaaaa gaccgggtta aaatttgcga tacgtcgcgt atttttcatt taagtttcac
     8341 aagttgcata agcaatgaga tttagatcac atattaagac atggcaggcc cgtaaactac
     8401 ggttccatta cattgttatg aggcaacgcc atgcatccac gttttcaaac tgcttttgcc
     8461 cagcttgcgg ataatttgca atcagcgctg gcccctatcc tggcggacca ccattttccc
     8521 gccatgctga ccgcagagca ggtctcgacg cttaaaaata cggcgggact ggacgaagac
     8581 gcgctggctt tcgcactgtt acctctggcg gcggcctgcg cccgtaccga tttgtcccat
     8641 tttaacgtcg gcgcgattgc gcgcggcgtt agcggcaact ggtatttcgg cgcgaatatg
     8701 gagttcctgg gcgccaccat gcaacaaact gtgcatgctg aacaaagcgc gattagccac
     8761 gcctggctac gcggcgaaaa agggctcgcc gccgtcaccg ttaactacac gccttgcggc
     8821 cactgtcgcc agtttatgaa cgagctgaac agcggtctgg atctgcgcat tcatctgccg
     8881 ggccgcgcgc cgcatacgtt acgcgattat ctgcctgacg ctttcgggcc aaaagatctg
     8941 gagatcaaaa cgctgctgat ggacgagcag gatcatggct ttacgttaac gggcaatacg
     9001 ctaacgcaag cggcgattac ggcagccaat aagagccata tgccttatag ccactcaccg
     9061 agcggcgtgg cgctggaatg taaagatggc cgtattttca ccggcagcta tgcggaaaac
     9121 gccgccttta accctacgct tcccccactg caaggcgcgc taaacctgct gagtctcaat
     9181 ggctatgact atgcggatat tcagcgcgcg attctggcgg aaaaaggcga tgcggcatta
     9241 attcaatggg atgccaccgc cgcaacgctg aaagcgttag gttgccataa tattgaccgc
     9301 gtgcttctcg gctaagcaaa tgtgccggat agcgacgcac tggcgtctta tccggcctga
     9361 ctctcctctc ccgcgacccg atacaaggga aatcatgctg aaaatctccg caatcagacg
     9421 gcggtttctt gcgctacgtc ttcgggtaca gtagcctgat cgtactttca tcctggtatc
     9481 gagtttcctg catgttaaag cgcgtgtttt acagcctgtt ggtcctggta ggcttgctgc
     9541 tgttgacggt gcttggcctc gatcggtgga tgagctggaa aacagcgccc tatatctatg
     9601 acgagctaca ggatctcccc taccgccagg ttggcgtcgt gttagggaca gccaaatact
     9661 atcgcaaggg tgtcattaat cagtactatc gttatcgtat ccagggcgcg ttaaacgctt
     9721 acaatagcgg taaagtcaat tacctgctgc tcagcggcga caatgccctg caaagctata
     9781 acgaaccgat gaccatgcgc aaagacctta tcgcggcggg cgtcgatcct gcggacattg
     9841 tgcttgatta cgctggcttc cgtacgcttg actccattgt gcgtacccgc aaagtgtttg
     9901 atatcaacga ctttattatc atcactcagc gcttccactg cgaacgcgcc ttgtttattg
     9961 cgttgcatat gggcattcag gcgcagtgtt acgcggtacc ttcacccaaa aatatgctga
    10021 cagtacgctt gcgcgaattt ggcgcccgct ttagcgcgct ggcggatctc tatattttta
    10081 aacgcgaacc gcgtttttta ggcccgctgg tacctattcc cacgcagcat caggtgccaa
    10141 atgacgccca ggggtatccg gccgttacgc cggaacaatt gcttgaactg gaaaagaaaa
    10201 aagggaaatg atcatggatg tacagacgat atttgtcata ttagcctttc tgctactccc
    10261 gcttttttgc tttcgtgagg cctggaaagg ctggcgaacc ggcgcggtag ataaagttgt
    10321 caaaaatgcg cgaaaaccgg tttatgt
//
LOCUS       DAJVSD010000161        10333 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.161, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000161 DAJVSD010000000
VERSION     DAJVSD010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10333
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.161"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(1..10195)
                     /gene="siiE"
                     /locus_tag="OQP62_003145"
                     /pseudo
     CDS             complement(1..10195)
                     /gene="siiE"
                     /locus_tag="OQP62_003145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463126.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="non-fimbrial adhesin SiiE"
     gene            complement(10212..>10333)
                     /locus_tag="OQP62_003146"
     CDS             complement(10212..>10333)
                     /locus_tag="OQP62_003146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type-I secretion protein"
                     /protein_id="HCS1722626.1"
                     /translation="DASVITGKHSIMEYLLSPLMKGVDKAFSEPVNTKRLDTP"
BASE COUNT         2324 a         2813 c         2336 g         2860 t
ORIGIN      
        1 gaagggtata tgtgccgtca accagagtat tcgggctgtc aaaaatccac tgtccgtcgg
       61 catttttgcg tatcacattc cagttagcgc caccatccag ggttacgcgt acctggacga
      121 catcaccggg aacgtcaatt ctgaatgacg gtttggcaac attcgttaat tgatcattct
      181 gcacgccagt atcattaagc aatacgatat tgttaatggt tgtcgtggta tcaatacgta
      241 cctctaacgg cgcagattct tttacattcc ccgccagatc ttccaccaca acggctaact
      301 gatatgagcc atcagcccag ctcgcagaag gcgtaaagcg ccattaacca ttggtgaata
      361 ccgccgcttc ctcgtgcgtt ttaccgttgt aagttacttt gaccatcacg cgcgtaacgt
      421 cagaatcaat ctggcgtatg tcgaacacag gccgatcgtg attggtgagg cgatcgccaa
      481 cagtaccgct atcttcgccg gccgccagct caatcaccgg cgtagtcaac gtaccgtcta
      541 tcgtcacctt taaaggcgcg gatgtttgct gattaccggc cacatctgtt accgtcacgg
      601 tgaatgtgta gctaccgtcc gccaaagcag aatccggtcg atagcgccag ccgtcggctg
      661 attcggtgag taccaccgtt ttaaacgtgc cgttatgctc aatactcaat tccacgtgtc
      721 gaacatcttt atcgatactc cccaacacaa ataccggctg agtgacgctg gtcagattat
      781 cgttcttatt ctgtccggta tcctgatcgg gcgctagctc aatggttggc gtcaacaacg
      841 tgatgtcgat agtgaaatcg agcgtccccg tcatcttatt acccgcaccg tcagtcactt
      901 ccacgatcag ggtatgctgt ccctctggca tatccgtcgg ccaggtgtaa tcccaaatgc
      961 caaccgtcga actcttgatt gcagtaaccc aggtcgtgcc gccgtcaata ctcagaagaa
     1021 ccttttccac atcatccggt accgagatct ggaactgcgg acgcacatgt tttgtcacat
     1081 tatcgccagg gacgccgcta tcgttgacta attcaatatg atcaatggct atttgcgtat
     1141 ccactgtcac cgtcagcggc gtagacggac gcgtatttcc cgcccgatcc tccactgtca
     1201 ccgtcagcgt ataatcaccg tcgccccacg gcgctggcgg tgtaaagctc catcctccag
     1261 ccccctgtgt cgcggtaaac gaggttgtcg ttccattatg cgtgacgctg actgtaacgt
     1321 tgataacatc cgaatcgata ttctgcagaa taaaagtcgg ccgggtgcga ttggtcatat
     1381 catcgccagg cgtaccggta tcatccgtgc tatccagcgc aatggtcggc gtcgacaacc
     1441 gggtgtcgat gaaaaattca agcgtttgcg tcgccgtatt gcccgctctg tcggtgacca
     1501 tgacggttag ggtgtgtttt ccatcgccca tatccgttgg ccaggtatag ccccagacgc
     1561 cttcgatacc ctgcgtcgcg ctcacccagt ttgcgccccc atcaatgctc agttgcacag
     1621 aattcacatc cgccggcacc gtgatctcaa actgcggacg ggtgctatta gttagattgt
     1681 catcaggcac gccatgatca ttgaccaatg taatatcagt aatgctggtt tgcgtgtcca
     1741 ccgtcaccac cagcggcgtg gactgacgaa cgtttcctgc gttatccgtt acctctaccg
     1801 tcagcgtata gctaccgtcc gcccagtcag catctggcgt aaagcgccac tgtcctccaa
     1861 cctgggttag tgtcacttcc tggctattgc cgccctgtgt gatccgcaaa atgaccgagt
     1921 gcgcatcggc gtcaatattg ccaatggtaa agcccggtct tttgacgctc gtaatatgat
     1981 cgccaatggc acctgtatcg tccctgctgt ccatagcgat ggtaggcgtt gacagccggg
     2041 tatcaatggt aaaatcgagc gtctgcgtcg tcttatttcc cgccttatcg gtcgcttcta
     2101 ccgtcagggt atgtagcccg tcggtcacat ctttcggcca ggtgtaatcc cagatccctg
     2161 ccgtgccctg tgttgcacga acccacgtat taccgccgtc gatactcaga cgtacctcgt
     2221 tgacatcccc tggcaccgtg acgcggaagt gtggacgaac gtcattggtc aggttgtcgc
     2281 cgggaatacc gttatcatta accagttcaa taacatcgat ggtgatttgg gtatcaaccg
     2341 tgaccgtcag cggcgctgag tattttacgt tccccgcatc atcctccacc ctcaccgtca
     2401 gcgtatagtc gccatctgcc catgtgccgg tcggtgtcac gctccagatg ccggtcgcgc
     2461 ctttggtggc cgtcagcact tctttcgtgc cgccatgctg cacctcaacc gtgacatacc
     2521 gcgcgtctgc gtcaatattg cccagtaaaa acgtcggctt atttacgttg gtcaggttat
     2581 cgccttttgt tccgctgtcg tccgtgttgt ccagcacgat agtcggttct gacagtaggg
     2641 tatcgatgat gaagtccagt tgctgcgtcg ttttgtttcc cgccttgtcg gtcgcctcca
     2701 ctgtcagggt atgcttcccc tctcccacat cagccagcca ggtataatcc cagacacccg
     2761 gcgtcgcgct ctgggtcgcg ttgaaccacg tcttgccgcc gtcaatgctc aggcgcacca
     2821 cgttgacatc cgtcggtacc gtcacctgga agtgtggacg cacattatta gtcagattat
     2881 cgttgggaat accgctgtca ttgaccagtt caatgttatt aatggcgatt tgcgtgtcca
     2941 ccgtcaccgt cagcgatgca gaatggctgg tgttccccgc tttatcttcg actgacacac
     3001 tcagggtata atcaccatcc gcccacgccc ctgtcggcgt aaaggtccat ccgcctgcgt
     3061 ctttcgtggc gtcaaatgtg gtggtgacgc cgccatgctc tacgctgacc gtaacgcgaa
     3121 cggcatcatc atcaatatgc tgcagggcaa atgtcggctg ggtgcgattg gtcatgttat
     3181 cgccatggac accactgtcg tccgcgctat ccagtacgat aaccggcgtc gacaacgtag
     3241 tatcaatagt gaagtcgagc gtcctggtca ccgtattgcc tgcgttatca gtcgctttca
     3301 ccgttaacgt gtagtcacca tctgccactg tctttggcca ggtataattc cagacgcccg
     3361 gcgtcgcgct ttgcatcgct ttaacccagg ttacaccgcc gtcaatgctc agactgactt
     3421 cgttaacatc ccccggtacc gtcacgcgga actgcggatg ggcgtcgtta gtcatattgt
     3481 cgccgggaat accgttatca ttaaccagtt caataacatc aatggtgatt tgggtatcaa
     3541 cagtgaccgt cagcgacgct gagtgttttt cgttccccgc ctcatcttcc accctcactg
     3601 tcagcgtata gtcgccatct gcccatgtgc cgatcggtgt cacgctccag ttgccggtcg
     3661 cgtctttggt ggccgtcagc acctctttcg tgccgccatg ctgtacctca actgtgacat
     3721 accgcgcgtc tgcgtcaata ttgcccagta aaaacgtcgg cttatttacg ttggtcaggt
     3781 tatcgccttt tgttccgctg tcgtccgtgc tgtccagcac gatagtcggt tctgacagta
     3841 gggtatcgat gatgaagtcc agttgctgcg tcgttttgtt tcccgccttg tcggtcgcct
     3901 ccactgtcag ggtatgctta ccctctccca catcagccag ccaggtataa tcccagacgc
     3961 ccggcgtcgc gctctgggtc gcgttgaacc acgtcttgcc gccgtcaatg ctcaggcgca
     4021 ccacgttgac atccgtcggt accgtcacct ggaagtgcgg acgcacatta ttagtcagat
     4081 tatcgtcggg aataccgctg tcattgacca gttcaatatg gtcaatggtg atttgcgtat
     4141 cgatggtgac cgtcaacggc gctgagtggc gaatattacc cgcctcatct ttcaccgtta
     4201 ccgtcagcgt atagtcgcca tcagtccacg cgctgccggg tacaaaacgc cactgcccgt
     4261 tagtctgcgt cagctccacc tcctcgctgt gaccatcgcg catcacctgc acgacgacct
     4321 gagtcacgtc agaatcaata ccgccgataa taaaacccgg cgttttaacg ttagtcttat
     4381 tatcgttggc ggtgccgcta tcatctgcgc tatccagcgt gatggtcggt gtcgacaatg
     4441 tggtatcaat gataaaattg agcgtttccg tcgccgtgtt gcctgcaaca tcggttgctt
     4501 tcactgtcag ggtatacgta ttttcgacca gatctgtcgg ccatatatac tcccaaacgc
     4561 cgtcagacgt cagcgttgcg ttaacccagt tgatgccgcc atcaagactc agttgcacag
     4621 agttcacgtc cgtcggtacc gtaatatgaa actgtggacg tgcttcattg gtcaggttat
     4681 ccccgacaat acccgtgtca ttaagaagcc caatgcgatc aatagacgtt tgcgtatcga
     4741 tagtcaccgt cagcggcgca gaataatttg tattacccgc cttatcttct acctttaccg
     4801 tcagcgtata gtcgccatcg gtccaggctg cgcccggcgt aaagcgccac acaccgccgt
     4861 tcttaatcaa ctctatctgt tggttcttac catcatgcgc caccgtcacc accactttgg
     4921 tcacgtcggc gtcgatatta ccgagggtaa agcctggcat cttaacgttg gtgatgttat
     4981 cgccagcggc gctgtcatcc gcactgtcca gggtaatagt cggttctgac agcagggtat
     5041 cgatgatgaa gtccagtttc tgcgtcgttt tgtttcccgc cttgtcggtc gcttccacca
     5101 tcagggtgtg agggccgtta gccacattcg tcagccaggt ataatcccag acgcccgacg
     5161 tcgcgctctg cgtggcgtca aaccacgttt tgccgccatc aatgctcagt cttacaccgt
     5221 taacatccgc cggtactgtc acctgaaagt gcgggcgcgc ttcattggtc agattatcgt
     5281 cggggatact gctgtcgtta accagttcaa tacggtcaat ggcgatatgc gtgtccactg
     5341 tcaccgtcaa cggcgcggac tgcttcacat ttccggccct gtcttctacc ttcaccgtca
     5401 ggatatagcc gccgtccgcc cagtcgctgg tcggcgcaaa gcgccactgt ccgccggtct
     5461 gaaccagtgg tacctcctgt ttaatgccat tgtgcattac ctccactatc acccggctga
     5521 catcggtatc aatattgttg agggtaaagc ccggcgtttt aacactggtg atattatcgc
     5581 ccgcgatgcc gctgtcatct gcgctgtcca gcgagagggt cggcacagac agagtggtat
     5641 cgatggtgaa atcgagcgtc tgtgttgcct tatttcccgc ctcatcggtc gcttctaccg
     5701 tcagggtata gcctccgtcg gccacatcat ccggccagat ataatcccag acgcccggcg
     5761 tcgcgctctg ggtcgcgttg aaccacgtct tgccgccgtc aatgctcagg cgcaccacgt
     5821 tgacatccgt cggtaccgtc acctggaagt gtggacgcac attattagtc agattatcgt
     5881 tgggaatacc gctgtcattg accagttcaa tgttattaat ggcgatttgc gtgtccaccg
     5941 tcaccgtcag cgatgcagaa tggctggtgt tccccgcttt atcttcgact gacacactca
     6001 gggtataatc accatccgcc catgatgtcg gcggcgtaaa ggtccatccg cctgtgcctt
     6061 tcgtggcgtc aaatgtggtg gtgacgccgc catgctccac gctgaccgta acgcgaacgg
     6121 catcatcatc aatatgctgc agggcaaatg tcggctgggt gcgattcgtc atgttatcgc
     6181 cctggacacc ggtatcgtcc gcgctattca gtacgatgac cggcactgac agcgtggtat
     6241 ccaccgcgaa atcgatggtc ttcgtcactg tattgcctgc tttatcagtc gcttccaccg
     6301 ttagcgtgta ttgaccatct gccaggtctg tcggccagat atactcccag cttcctgcca
     6361 cgcccggggt tgcctgaacc cacgaattac caccgtcaat gctcagacgg acttcattga
     6421 catccgtagg taccgtcaca cgaaagtggg gacggtcgtc gttggtcata ttgtcgcctt
     6481 tcacgccgct atcgttgacc agttccaccc catcaatggc gatttgggta tcgataacga
     6541 ccgtcagcgg cgctgaatag ctggtatttc ctgccttatc ttctactttc accgttaacg
     6601 tgtagctgcc atccgcccac gtattccctg gtgtaaataa ccaactacca ttgaggtggg
     6661 aaagttcgat ctcttcgctc acgccattgt gcatcacctg tacgacgacc cgatgcgcat
     6721 cggcatcaac accggaaata gcaaaacctg gcttattgat attggtcagg ttatcgcctg
     6781 tcacccccgt atcatcctta gaaagcaggg aaatcaccgg cgttgatact gtggtatcga
     6841 tagtaaaatc gaataccgcg ctgttcgctt tattacccgc aatgtcctca accttgacat
     6901 aaacctgatg caagccttcc gttaaatctg aagtaaaggt ataggtccat gaaccatcag
     6961 gttgttgcgt ggcaacaccg atctgcgtat cagacgcggc atcccatacc tgaacgctga
     7021 taatgtccgg atcaatatct tttaggtgca aggtagggtt aacgatattc gttaaattat
     7081 catctgcgat tcccgaatct gaatccgggc tcaatgaaac tatcggtatt gaaatagcag
     7141 tatcaacgct aattaagaaa ggatccgaat gcgcaatgtt gccagcgata tcttcaactg
     7201 aagcggttat tctatgatcg ccatcaacca aaccttgatc ggctttcagg gtatactccc
     7261 atctgctatc tttatttgtt ctgacctcag cgattagtgc gccatcaaca tagagtttaa
     7321 ccgttgaata gggtgcagcg gtccctgtca gtgcaggatt cttttcatta ataatatggt
     7381 ctgtattatc aacccccgta tcgttgacca actctattgt tggtttttgc gtttgcgtta
     7441 cgatttggaa attatacgct gatgaggagg cagtattacc ggcaatatct tctaccttta
     7501 ccgttacgtc atgcgagcca tcggacaacg ctgtggtaaa ttgaaaattc catacaccat
     7561 catcgccagc aatagcctcg ccacttaaca caccgtcaac atagatggaa accttagcat
     7621 tagcttcagc catcccggta aacaacggcg tattaatttt agtaatcata tcgcctttaa
     7681 cgccagagcc agcgctatca tgcaacataa cagtagggat cggcgtaaag ctatcaatgg
     7741 taagctgata atctacagat gacgttcttc ctaaaggatc gatagattca accgtaatct
     7801 tataaacatt gtcagacaga tttcgggaaa tatcaaaatt ccagttaccg tctgcatccg
     7861 cagtcgtcac gcctatcgtt ttaccatcga taaggatatt tatggtagca aacctatccg
     7921 ctgttcccag taatgtcaga gcattatgtt tattggtaat ccagtcgcct tttgcaccgg
     7981 aatcatcact ggcatcgagt tccgcttttg gaggtacaac ttcagtttga atagtaaaag
     8041 aatatttaac agtagaggat ttattaccgg cggcatcctg agaaatgatt tcaatatcat
     8101 aggcgccctg aagaaattta ttactaaact gataattcca ggtcccgttt gagtcaacct
     8161 caatgctgtc atataattta ccatctcgca tcaataagat ggtagacttt ggctctgccg
     8221 taccgactaa agccggtaaa tcattccctg ataaaattat accattcggt aaaacaacaa
     8281 aatcctccaa agaaaccgtc ggaggtacag gggcaacagt atcgataacg taactaaagg
     8341 aaaaatcctt tttgttgcca gcgacatctt caacagtgaa cgtaagattg ttaacccctt
     8401 ccactgagtc tgaagtgaaa ttgaacgtcc attcgccctt gtcattcgct ttaaaaataa
     8461 cctcttcgcc agtctcacta tttatgacac tgataatagc atttggctca gttttacctg
     8521 taaaggttgg gcgagtattg ttagtaacgt tatctccaac aataccgcta tcatcagtcg
     8581 tttcaatctc agcgctgaaa tagctgatac gggtatcaat agtaaaaggc agatttgccg
     8641 tcgcagaggt atgcccggca atatcagtag cggttgctgt tatattgtat tcgccatcct
     8701 tgagcggcgt agtaagcgta tagctccatg tcccatcttt agcaacaatg acctcaccaa
     8761 gatgtttaag cccaagataa atagagactg tagaaccagg ttccgccaca ccaataaatg
     8821 ttggcagagt gctatttgta atgttgtcat ttttaatgcc ggaatcacta ctatcatcca
     8881 gctcaatcgt cggcttttcc ggaggaatgg tgtcggttat gatactatcc gtcgtttcgt
     8941 ttttattacc tgctttatcc acggcaacga cttttatact attttcgccc tcagataatt
     9001 cattatcttt aaattcataa ctccagtttc catctttatc gacatcaacg ctggcaacca
     9061 gtttattatc tacataaatg tcaaccttag cattctcttc cgccgtacca acaattgaag
     9121 gcgtcaaggt cggcgttaag cccttatgac cggacacact actttcaggc gaaagttcaa
     9181 atgttggctt atcggtaacg gaatcgatag taatgacaag tttggcgcta ccgcttccat
     9241 cagcagtctt ggcctctgcc tccagattgt atgttccatc agtcaatgtt tcaggcgctg
     9301 tgaaggtgaa gttacccaaa ctatccgcta cagcctgacc gacagcaata ccattaattt
     9361 taataataac cgtggcattg ggagcagtgc tacctacaaa ctgaggtttg gtaaaattag
     9421 ttatactatc atctttgcta ccgctgttac tctcggccgc aagcgctaat gtgactttaa
     9481 gcggctcttt aacagactcg gcatcgagct tattttcctc atttttactg ctattacttt
     9541 tgccagtact ggtattttta ttaataggtt gaggaagaac tttttcagca tcgttctgtt
     9601 tagaagcctg cgttgcttta gcctgtgtat tttgctggga agcatcgctt tgctgagcca
     9661 gattgtcttt tgctacattg tcagccaaaa agttctgcag catttcttca atttgctttg
     9721 acgagttctg tacttcaaac gcttcattga gcgttttttc tgctgcctcc ttagctttct
     9781 ctgcttcttc cttcgcctta tcagcttctt tctttgcgtt ttcagcctcg tcaagctgct
     9841 tttttaattc ctcttcttcc ttcttatttc gtcgtttgcc attacctttc ttttctacct
     9901 gagcagaatc aactaatgag ctgtcaattc tctccagttg aatatctttt aaatctacgc
     9961 tgcccagaat tttagcgccg gtaatagtct tatctttaaa tttaacagcg aggttattgc
    10021 ctttgatact tgaataaaga gcgccattga caatgatcac tgacccatgc ggcgtggtaa
    10081 tgttcatgtc tggcccggaa agagaaactt ttgcgccttt ggcattaccc aaagaagata
    10141 aatcaattac agaattttga tcggcaaaaa acttttgtat gcttttattt cccataatat
    10201 tatattcact ctcaaggtgt atctaatcgt ttagtattaa ctggttctga aaaggctttg
    10261 tccacgcctt tcatcaaagg agataacagg tattccataa tgctgtgttt tccggtaatt
    10321 acactggcgt caa
//
LOCUS       DAJVSD010000162        10307 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.162, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000162 DAJVSD010000000
VERSION     DAJVSD010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10307)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10307)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10307
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.162"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            170..2806
                     /locus_tag="OQP62_003147"
     CDS             170..2806
                     /locus_tag="OQP62_003147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbH family protein"
                     /protein_id="HCS1722627.1"
                     /translation="MKGKYKAALALLLLLILVPLTLLMTLGLWVPTLAGIWLPVGTRI
                     ALEQSPRLTRHGLVIPDLRYLVNDCSLAHITQAELTHPSRWLLNIKSLKLDAACLAKL
                     PASEASPAAPRTLAQWQSMLPNTWINIDNVILAPWPEWQGKLAISMTPVIQQIRYQGE
                     KVKFQGQLRGQALTVSQLEIAALANQPPVSLAGEFMLPLVPDGLPVSGHAAATLRLPQ
                     EPSLVDAELEWRDNAGQLIVMARGNPDPILDLPWAVTRQRLTVSDGRWNWPYQGFPLS
                     GRLAFNIDNWQAGPDNARVSGRLNILTQGDAGKANAVLTIGPGKLSMDSSEMPLQLTG
                     EAKQKDLIFYAVLPAMFRGSLADPQLTFAPGALLRSRGRVIDALDIDEIRWPLAGVKV
                     TPRGVDGRLQAILRAHENEMGDFVLHLDGLANDFLPDAGRWRWRYWGQGSFTPMRARW
                     DIAGQGEWHDNTIRLTSLSTGFDQLHYGAMTVTSPRLALDKPIVWVRDATTPSLQGAL
                     SLEAGKTVFTSGSVLPPSTLNFSVEGREPTLFQFKGDLRAGAIGPVRLNGRWDGERLR
                     GQAWWPKQSLIVFQPLLPPDWKMTLREGSLYAQVAFSAAQGQGFEAGGHGVLKGGSAW
                     MPDNKINGVDFILPFRFHNGAWQLGTRGPVSLRIAGIVNQVTAKNITADLQGGYPWSE
                     SNPLLLSDVSVDVLGGQIIMKQLRMPQHDPALLRVQNISSSELISAINPKQFAMSGPV
                     SGALPLWLNNEKWIIKDGWLTNPGPMTLRIDKDTADAVVKDNVTAGSAINWLRYMEIT
                     HSWTKINVDNLGVLTMQAAITGKSRVDGKTAIVNLNYTHEENVFTLWRSLRFGDNLQA
                     WLEQNTALPQPPCRKDKDCEDK"
     gene            2806..2997
                     /locus_tag="OQP62_003148"
     CDS             2806..2997
                     /locus_tag="OQP62_003148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnbE family lipoprotein"
                     /protein_id="HCS1722628.1"
                     /translation="MKMSIAMLSALASFIVVGCTPRIEVAAPEQPITINMNVKIEHEI
                     HIKVDKDVEELLKSRSDLF"
     gene            3005..3328
                     /locus_tag="OQP62_003149"
     CDS             3005..3328
                     /locus_tag="OQP62_003149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbL family protein"
                     /protein_id="HCS1722629.1"
                     /translation="MKKYLILWVLTLSLLTPSVWALTLDEARTQGRVGETLNGYLVAL
                     KNDAETQKLVLDINHARRASYQQLADSNHLPVDEVAKMAGQKLVKRARPGEYVQGING
                     KWMRK"
     gene            3471..3920
                     /locus_tag="OQP62_003150"
     CDS             3471..3920
                     /locus_tag="OQP62_003150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HCS1722630.1"
                     /translation="MTSEKLSAACHCGSVVFTVQLSDGFHTARRCNCSFCRMRGAVAV
                     SAPLSGIKVLKGQDKLTEYRFNTGKAVHFFCSVCGIYTFHQRRSNPDQYGVNVACIEN
                     VSPFDFACVEVNDGVTHPSDGGSSGVVGYLRYEPKKSPPVETGGKNI"
     gene            complement(3917..4522)
                     /gene="azoR"
                     /locus_tag="OQP62_003151"
     CDS             complement(3917..4522)
                     /gene="azoR"
                     /locus_tag="OQP62_003151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent NADH-azoreductase"
                     /protein_id="HCS1722631.1"
                     /translation="MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLA
                     ANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIP
                     TQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVF
                     LGFIGITDVNFVFAEGIAYGPEVAAKAQADAKAAIDSVVAA"
     gene            4723..8625
                     /gene="hrpA"
                     /locus_tag="OQP62_003152"
     CDS             4723..8625
                     /gene="hrpA"
                     /locus_tag="OQP62_003152"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460600.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HCS1722632.1"
                     /translation="MTEQSTLTLQVLQQRLDALMLRDKQRFSRRLHGVKKVKNPDAQQ
                     AIFQTMAKEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAVRDHQVVIVAGET
                     GSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRF
                     SDHVSSNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLP
                     RRPDLKVIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ
                     AIFDAVDELGRESPGDILIFMSGEREIRDTADALNKLNLRHTEVLPLYARLSNSEQNR
                     VFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQAS
                     ANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAA
                     FPFVEAPDKRNIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLE
                     AQKHGCVREAMIITSALSIQDPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWNYLG
                     EQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHV
                     ALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWTMVAELVETSRLWGR
                     IAARIEPEWVEPVAQHLIKRSYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQI
                     DPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDDTLFEF
                     YDQRISHDVISARHFDSWWKKISRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGN
                     LKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRRELVIALIKSLPKPV
                     RRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDREDWHWDQVPEHLKIT
                     FRVVNDKNKKLQEGRSLAELKNALKGKVQETLSAVADDGIEQSGLHIWSFGELPESYE
                     QKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLLLLNIPSPIKYLHEK
                     LPNKAKLGLYFNPYGKVLELIDDCIACGVDKLIDANGGPVWSEAGFTALHEKVRAELN
                     DTVVDIAKQVERILTTVFNINKRLKGRVDMSMALGLSDIKAQMSGLVYRGFVTGNGFK
                     RLGDTLRYLQAIEKRLEKLAVDPHRDREQMLKVESVQQAWQQWINKLPPARREDDDVK
                     EIRWMIEELRVSYFAQQLGTPYPISDKRILQAMDQITA"
     gene            8689..9489
                     /locus_tag="OQP62_003153"
     CDS             8689..9489
                     /locus_tag="OQP62_003153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HCS1722633.1"
                     /translation="MNTTPFPALSAETLLAVNTVGQWLAQNDFSGEQPYSSDCVVLAG
                     NAVIPTIDAACRIAKAQGVPLLISGGIGHSTPFLYAVIARHPRYHTIRTTGRAEAAIL
                     ADIANQFWHIPAEKIWLEDRSTNCGENARFSCALIRQAKENINTAIVVQDPTMQRRTI
                     AAFRRVTNDDTDAPRWLSFPGFVPVLRHLNGGTRFANVEEGIWTVERYLSLIAGELPR
                     LRDDETGYGPRGKDFIIHVDIPRDIEKAWQVLQADTTLRSALEQRALR"
     gene            9606..10136
                     /gene="cybB"
                     /locus_tag="OQP62_003154"
                     /pseudo
     CDS             9606..10136
                     /gene="cybB"
                     /locus_tag="OQP62_003154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460598.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b561"
BASE COUNT         2448 a         2543 c         2898 g         2418 t
ORIGIN      
        1 tttaggttat cattctccac gacgcctcaa atagtcggag ggcggccctg caacacgcat
       61 aacgtatcac ccgtttgcaa catgaactat taggctatgt acgggcaatc atgccaaaat
      121 aaagagatag ccgactgaat ttttcgttaa atcaggaaat taatggccca tgaagggtaa
      181 atataaagcc gcccttgcgc tactgttact gctgattctt gtccctctga cgctactgat
      241 gaccctcggg ctgtgggttc ccactctggc gggaatttgg ctacccgtcg gtacccgtat
      301 cgctctggaa caaagtccac gcctgacacg tcatgggtta gtgattcccg atcttcgcta
      361 tctggtcaat gattgttcgt tagcgcatat tacccaggcg gaactgacgc atcccagccg
      421 ttggttgctg aatattaaaa gcctcaaact ggatgccgca tgcctggcga aactgccggc
      481 ttcggaagct tctcccgccg cgccgcgtac gctggcgcag tggcagtcaa tgctgcccaa
      541 tacctggatt aacatcgata atgtcattct cgcgccctgg ccggaatggc agggcaagct
      601 ggcgatctcc atgacgccgg tcattcagca gatacgttat cagggcgaaa aagtaaaatt
      661 tcaagggcag ctacgcggtc aggcattgac ggtgagccaa ctggagatcg ccgcgctggc
      721 caaccagcct cccgttagcc tggcggggga gtttatgttg ccgctggtac cggatggcct
      781 gccggtcagc ggtcatgcgg cagcgacctt gcgtctgccg caggaaccgt cgctggtgga
      841 tgcggaactg gagtggcgtg ataatgccgg acagctcatc gtgatggcgc gaggtaatcc
      901 tgatccgatt ctcgatctcc cctgggcggt aacgcgtcag cggcttaccg tcagcgatgg
      961 ccgctggaac tggccatatc agggattccc cttgagcgga cgtctggctt ttaatatcga
     1021 taactggcaa gccgggccgg ataatgcgcg agtcagcgga cgcctgaata ttctgaccca
     1081 gggcgatgcc ggtaaagcga acgcggtact gactatcggc ccgggaaaac tcagcatgga
     1141 tagcagtgag atgcctctac agcttaccgg cgaggctaaa cagaaggatt taatctttta
     1201 tgccgtattg cccgctatgt tccgcggcag tctggccgat ccgcagctca cctttgcacc
     1261 tggcgcattg ctacgctcac gcggacgggt gattgatgcg ttagatattg atgaaattcg
     1321 ttggccgctg gcgggcgtta aggtaacgcc gcgcggcgtt gatggtcgat tacaggctat
     1381 tttacgggcg cacgaaaatg agatgggcga tttcgttctt catcttgatg gcctggccaa
     1441 tgattttctc cctgatgctg gtcgctggcg gtggcgctat tgggggcaag gaagctttac
     1501 gccaatgcgc gcccgctggg atattgccgg acagggcgaa tggcatgata acaccatcag
     1561 gttgaccagt ttgtccaccg gttttgatca gttgcactat ggcgcaatga ccgtcacatc
     1621 gccaagactg gcgctggata aacctattgt ctgggttcgc gacgccacaa cgccgtcgct
     1681 acagggcgcg ctgtctctgg aggcgggaaa aaccgtattt accagcggga gcgtgctgcc
     1741 gccttctacc cttaatttta gcgttgaagg gcgcgagcca accctgttcc agtttaaagg
     1801 cgaccttcgg gcgggggcga tagggccggt acggctgaac gggcgctggg atggcgaacg
     1861 ccttcgcgga caggcctggt ggccgaagca gtcgcttatc gttttccagc cgttgcttcc
     1921 accggactgg aaaatgacgc tgcgcgaagg ctcactgtat gcgcaggtgg ctttttccgc
     1981 tgcgcagggg cagggatttg aagcaggtgg acacggcgtg ttaaagggcg gtagcgcctg
     2041 gatgccggat aacaaaatca acggcgtcga tttcattctg ccatttcgct tccacaacgg
     2101 cgcgtggcaa ttggggacgc gcgggcccgt ctcgctgcgt attgccggga tagtcaacca
     2161 ggtcacggcg aaaaatatca ccgccgattt acagggcggt tatccctgga gcgagtcgaa
     2221 tccattactg ctaagcgatg tcagcgtaga cgtgctgggc ggtcaaatta ttatgaaaca
     2281 gttgcgaatg ccgcagcacg acccggcgct tttgcgggtg caaaatattt catccagcga
     2341 attgattagc gccataaatc caaagcaatt cgccatgtct ggtccggtta gcggcgcgct
     2401 gccgctgtgg ctgaacaatg aaaaatggat aatcaaagat ggctggctta cgaatcctgg
     2461 gccaatgacg ttgcgtatcg ataaagatac tgcggatgcg gtggtgaagg ataatgtcac
     2521 ggcaggctcg gcgattaact ggctacgtta tatggagatt acgcattcgt ggacaaaaat
     2581 taacgttgat aacctgggcg tactaacgat gcaggcggcc attaccggca aaagccgggt
     2641 agatggtaaa accgcgatcg ttaacttgaa ctatacccat gaagaaaatg tgtttacgct
     2701 gtggcgcagt ttgcgttttg gcgacaattt acaggcatgg cttgaacaaa atacagcgtt
     2761 gccgcaacct ccttgccgga aagacaagga ctgtgaggat aaataatgaa aatgagtatt
     2821 gccatgctgt cagcgcttgc gtcatttatc gtggtggggt gcacgccacg tattgaagtc
     2881 gccgcgccgg aacagccgat taccatcaac atgaatgtaa agatcgagca tgaaatacat
     2941 atcaaagtcg ataaagacgt tgaagaactc ctgaaatcac gcagcgatct attctgaggc
     3001 cataatgaaa aagtatttaa tactatgggt gctgacgctg agcttgctca caccttctgt
     3061 gtgggcctta accctggacg aagcgcgcac gcagggccgg gtcggggaaa cgctgaatgg
     3121 ctatctggtg gccttaaaga atgatgccga aacccagaag ctggtgcttg atatcaatca
     3181 tgcccgtcgc gccagttatc agcagttagc ggatagcaat catcttcccg tggatgaggt
     3241 ggcgaagatg gcagggcaaa aactggttaa gcgcgccagg ccgggagaat atgtccaggg
     3301 aattaatggc aaatggatgc gtaaataacc gcttcccgac aattttttta ccgcaaaatg
     3361 catttttata tgggtaattt ttgaatacgg aggtcgtatt tacattaggc gaaccggaag
     3421 gctatttcta tactgtcgac tggtatcact attcgcgtga gtaaccaggt atgacgtctg
     3481 aaaaattatc tgctgcctgc cattgtggca gcgtcgtgtt taccgttcaa cttagcgatg
     3541 gctttcatac cgccaggcgc tgcaactgtt cgttttgccg gatgcgcgga gcggtggcag
     3601 tgtctgcgcc gctatcgggt attaaagtgc taaaagggca ggataagctt accgaatatc
     3661 gcttcaatac gggcaaggcg gtgcattttt tctgttcggt atgcgggata tatacttttc
     3721 atcagcgccg atccaatccc gatcaatatg gggtcaatgt ggcgtgcatt gaaaatgtgt
     3781 cgccttttga tttcgcctgc gttgaagtca atgatggggt aacgcatccc agcgatggcg
     3841 gcagtagcgg cgtggtagga tatttgcgct acgaacctaa gaagtcacct cccgtcgaaa
     3901 cgggaggcaa aaatatttaa gcggccacga cgctgtcaat cgcggctttt gcatcggcct
     3961 gggctttagc tgccacttcc ggcccgtagg cgatgccttc ggcaaagaca aaattcacgt
     4021 cggtgatacc gataaaacca aggaacactt tcaggtaagg cgcaatcaaa tccgtcgggg
     4081 tgtctttatg gataccgccg cggctggaga gaaccaccgc gcgtttgccg gttaccagac
     4141 cttccgggcc tttttcggta tagcggaaag tgataccggc gcgggcaatc agatcaaagt
     4201 agtttttcag ctgcgtcggg atattgaaat tgtacatcgg tgccgcaata acgatgacgt
     4261 cgtgggcttt cagttcagca atgagttcat cagacagcgc cagagcgtcc tgctgacgtg
     4321 gcgttaaagg cgcatcgccc ggacgcatcg cgcccaccag ctcgccatcc agcaccggaa
     4381 cagggttggc cgccagatcg cggacagtaa tttcatctgc gacgtgtttt tcgcgccatt
     4441 gttcaataaa atagtcagtc aactgaccag actgagagta ccctgccaga atactggatt
     4501 taagaactaa taccttgctc atgggtgttt ccttttatgt gtttgaaggg gcgtgccccg
     4561 ttgcttgttg acactttatt cacaaatatg tcgcagggat agcgcaatat atcgaaccct
     4621 ttgttcgaaa ttattgaaca acacaaaaaa agccccaatg tggtactcta tacctatcat
     4681 ttaaaacgat tttaaacagg cagaatgctg cccaagagct ttatgactga acaatctacg
     4741 ttgacgcttc aggtgttaca gcagcggctg gatgcactga tgctgcgcga caaacagcgc
     4801 ttttcgcgcc gcctgcatgg cgtaaagaaa gtaaaaaatc ctgatgcgca acaggccatt
     4861 ttccagacga tggcgaaaga aattgaacag gctgcgacgc aggtcgctct ccgcgaagcg
     4921 gcgcgcccct caatcactta tccgcaaaat ctgcctgtta gccagaagaa acaggacatt
     4981 ctggaagcgg tccgcgatca tcaggtggtg atcgtggcag gggaaaccgg ttccggtaaa
     5041 accacccagt tgccgaaaat ttgtatggaa ctgggacgcg gaattaaagg acttattgga
     5101 catactcaac cgcgtcgtct ggcggcgcgc accgtcgcta accgcattgc cgaagagttg
     5161 caaacggagc ctggcggctg catcggctat aaagttcgtt tcagcgatca tgtcagtagc
     5221 aacaccatgg tcaaactgat gacggacggt atcctgctgg cggaaatcca gcaggacagg
     5281 ctattgatgc agtacgacac catcattatt gatgaagcgc atgaacgcag cctgaatatt
     5341 gacttcttgc tcggctatct gaaagagctt ctgccgcgtc gccccgatct gaaagtgatt
     5401 attacctctg cgaccatcga cccggaacgc ttctcgcgcc actttaataa cgcgccgatt
     5461 atcgaagtct ctggccgaac gtatcccgta gaagttcgtt atcgccccat cgtggaagag
     5521 gctgacgaca ctgaacgcga tcagctacag gcaattttcg acgctgttga tgaactgggg
     5581 cgtgaaagtc ctggcgatat cctgattttt atgagcggag agcgggaaat ccgcgatacc
     5641 gccgatgccc tgaacaagct gaacttacgg cataccgaag tgttgccgct gtatgcacgc
     5701 ttgtcgaaca gcgaacagaa ccgcgttttc cagtcgcaca gcggacgccg tatcgtgctg
     5761 gcgactaacg tggcggaaac ctcgctgacg gtgccgggta tcaaatatgt gatcgatcct
     5821 ggcactgcgc gcatcagccg ctacagctac cgcactaaag tgcagcgcct gccgattgaa
     5881 ccgatctcac aggcttccgc caatcagcgt aaagggcgtt gcggacgcgt atcggaaggg
     5941 atctgcattc gtctgtattc ggaagatgac tttttgtcac gcccggaatt taccgacccg
     6001 gaaattctac gtaccaacct ggcgtcggtt attttgcaga tgaccgccct gggactgggt
     6061 gacatagccg ccttcccgtt tgtcgaagcg ccggataagc gcaatattca ggatggcgtg
     6121 cgtttgttgg aagagctggg ggcgattacc gccgacgaac agcaaacggc atataagctg
     6181 acgccgctgg gccgacaatt atcccagttg ccggtcgacc cgcgcctggc gcgtatggtt
     6241 ctggaagcgc aaaaacatgg ctgtgtgcgc gaagcgatga tcattacttc cgcactctct
     6301 attcaggatc cgcgcgagcg cccagtggat aagcagcagg cttccgatga gaaacaccgg
     6361 cgtttccatg ataaggaatc cgattttctg gcgtttgtta acctgtggaa ttacctcggc
     6421 gagcaacaaa aggccctgtc gtcgaatcaa ttccgccgtc tgtgtcgcac cgactatctg
     6481 aactatttac gcgtgcgtga gtggcaggat atctataccc aactgcgtca ggtggtaaaa
     6541 gaactgggga ttccggtaaa cagcgaaccc gcagaatacc gggaaattca cgttgcgttg
     6601 ttaacggggc tgttgtcgca tatcgggatg aaagatgccg ataaacaaga gtacaccggc
     6661 gcgcgtaacg cccgattctc tattttcccc ggatccggtt tattcaaaaa accgccgaaa
     6721 tggacaatgg tcgccgagct ggtggaaacc agccgtttgt gggggcgcat cgctgcccgc
     6781 attgagccag aatgggtgga accggtagcc cagcacctga ttaaacgttc atatagcgaa
     6841 ccgcactggg agcgggcgca aggcgcggtg atggcgacgg aaaaggttac tgtctacggt
     6901 ctgccgattg tcgccgcgcg caaggtgaat tatagccaga ttgacccggc gttgtgtcgc
     6961 gagttgttta tccgccatgc gctggtggag ggggactggc aaacccgtca cgccttcttc
     7021 cgtgagaatc taaaattgcg tgcggaagtc gaggaacttg agcacaaatc tcgccgccgc
     7081 gatatcctgg tggatgacga taccctgttt gagttttatg accagcgtat tagccatgac
     7141 gttatttccg cccgccactt tgatagttgg tggaaaaaaa tcagccgcga gacgccggat
     7201 ctgctcaact ttgaaaaaag tatgctgatt aaagaaggcg cggaaaaaat cagcaaactg
     7261 gattacccga atttctggca ccagggcaat ctcaagctgc gtttgagcta tcagtttgaa
     7321 ccgggcgcgg atgctgacgg cgtgaccgtc catattccgt tgccgctact taaccaggtt
     7381 gacgagagcg gttttgaatg gcagatccca gggctgcgcc gtgaattagt gattgcgctg
     7441 attaaatcgt tgccaaaacc ggtacgtcgc aactttgttc cggcgccaaa ctatgctgaa
     7501 gcgtttttag gtcgcgtaac gccgctggag ctgccgctgc tggacgctct ggagcgtgaa
     7561 ctgcgccgga tgaccggcgt cacggtcgat cgggaagact ggcattggga tcaggtgccc
     7621 gagcatctga aaatcacgtt tcgcgtggtg aatgacaaaa acaagaaact gcaggaaggg
     7681 cgttcgctcg ccgagcttaa aaatgcgctg aaaggcaaag tgcaggagac gctctcggcg
     7741 gtagcggatg acggcatcga gcagagcggg ctgcatatct ggagtttcgg cgagctgccg
     7801 gaaagctacg aacagaaacg cggtaattat aaagtgaagg cgtggccggc gttagtggat
     7861 gagcgtgaca gcgtcgctat caaattgttt gataatccgc tggaacaaca acaggcgatg
     7921 tggtgcggtt tacgccgtct gctgttgctc aatattcctt caccgattaa gtatctgcat
     7981 gagaaattgc cgaataaagc caagctgggg ctgtacttta acccgtacgg caaagtactg
     8041 gagttgattg atgactgtat cgcctgcggg gtagataagc tgatagatgc caacggcggg
     8101 ccggtgtgga gcgaagcagg tttcaccgcg ctgcacgaaa aggtacgcgc cgagctgaat
     8161 gatactgtgg tggatatcgc gaagcaggtt gagcggatcc tgacgaccgt attcaatatc
     8221 aataagcgtc tgaaagggcg ggtggatatg agcatggcgt tggggctttc cgatatcaag
     8281 gcgcagatga gcggtctggt ataccgtggt tttgtgactg gcaacggctt taaacgtctc
     8341 ggcgatacgc tgcgttatct gcaggcaatt gaaaagcggc tggagaaact ggctgtcgat
     8401 ccgcaccgcg atcgggagca aatgctgaaa gtcgaaagcg tccagcaggc gtggcaacaa
     8461 tggataaata aattgcctcc agcgcgtcgc gaagatgatg atgttaaaga gatccgttgg
     8521 atgattgaag aactgcgtgt cagttatttc gcccaacagc tcggtacgcc ttatcctatt
     8581 tccgataagc gtattttaca ggccatggat cagattacgg cctaaaaagc caggcgacga
     8641 tatctttcaa agagatccgg tacaagttcg gaacaaaaag gaggaattat gaatacaacg
     8701 ccatttccgg cgctctctgc ggaaacattg ctggcggtga ataccgtcgg acagtggctg
     8761 gcgcaaaatg atttttccgg cgaacaacct tattcgtcgg attgcgtcgt cctggcgggc
     8821 aatgcggtga tccccactat cgacgcggcc tgtcgcatcg ccaaagcgca aggcgttcct
     8881 ttactgatta gcggcggtat aggtcattcg acgccgtttt tgtacgccgt gattgcccgg
     8941 catccgcgct accatactat tcgcacaacc ggacgcgctg aagccgctat cctcgcggat
     9001 atcgcgaacc agttctggca tattccggct gagaaaattt ggctggaaga tcggtcaact
     9061 aattgcggcg aaaatgcccg tttctcctgc gcactgatcc gtcaggcgaa agaaaacatt
     9121 aacacggcta tcgttgtgca agaccccacc atgcagcggc gcactatcgc ggcgtttcgg
     9181 cgcgtgacaa acgacgacac cgatgcgccg cgctggctga gttttcctgg ttttgttccg
     9241 gtactgcgcc accttaacgg cggtacacgt tttgccaacg ttgaagaggg catctggacg
     9301 gtggagcgtt atctgtctct gattgccggc gagctgccac gtttgcgtga cgatgaaaca
     9361 gggtatggac cgcgtggtaa agattttatc attcacgttg atatcccacg cgatattgaa
     9421 aaggcatggc aggtattgca ggcagatacg acgctgcgca gtgcgttaga acagagagct
     9481 ttacgctaaa aatcgcccgt ttgcgagggt gaacgggcaa gtgcgaccac catttcataa
     9541 atttgatgaa ttatttataa aagctggtta tgttgtcgct ttacggtttt cattcaggac
     9601 gcgctatggg caataagtat tccggcctgc aaattggtat tcactggtta gtcttttttc
     9661 tggttattgt ggcttacgcc gcgatggagc tacgcggttt tgcgccgcgt agttatcggc
     9721 cctagtttaa tatgacgcat gtttcatgtg gtatcactat tttgctttta atggtggcgc
     9781 gcttgattat tcggctgaaa tatcccacgc cgcccattgt tcctcgtcca aaaccgatga
     9841 tgaccggaat ggcgcattta ggacatctgg tgatttacct gttatttatc gtgctgcctg
     9901 ttattggtct ggtcatgatg tataaccgcg gcaatccctg gttcgcattt ggcattacta
     9961 tgccgcatgc cgccgaagct aactttgaac gcgtagatat gctgaaatcc tggcacgtca
    10021 cgctggcgaa tctgggctat tttgttattg gacttcatgc catcgctgct ttgatgcatc
    10081 actatttctg gaaagacaat acgctgttac ggatgatgcc gcgtaagcgt aactgaccgt
    10141 cctgtatgac gtttgctaca ggcggggtta actgctttag gcaaacaagg catctatcag
    10201 aggggatggc gtattccata cagaaaacgc ctgcgtctaa ccaggacccg tgacgcaggc
    10261 gaaggaggac gggtctacat cggaagcggg tattatactt atttgta
//
LOCUS       DAJVSD010000163        10153 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.163, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000163 DAJVSD010000000
VERSION     DAJVSD010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10153)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10153)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10153
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.163"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            19..1220
                     /gene="proV"
                     /locus_tag="OQP62_003155"
                     /pseudo
     CDS             19..1220
                     /gene="proV"
                     /locus_tag="OQP62_003155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461735.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     ATP-binding protein ProV"
     gene            1213..2277
                     /gene="proW"
                     /locus_tag="OQP62_003156"
     CDS             1213..2277
                     /gene="proW"
                     /locus_tag="OQP62_003156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     permease ProW"
                     /protein_id="HCS1722634.1"
                     /translation="MADQTNPWDTAQVADTTTQTADAWGTPAGVATDGGSTDWLNSAP
                     APAPEHFSLLDPFHKTLIPLDSWVTEGIDWVVTHFRPLFQGIRVPVDYILNGFQQLLL
                     GMPAPVAIILFALIAWQVSGVGMGIAALISLIAIGAIGAWSQAMITLALVLTALLFCV
                     VIGLPMGIWLARSPRAAKIVRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFA
                     LPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLAL
                     SMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGRDSRSR
                     GNRRWYTTGPVGLITRPFVK"
     gene            2347..3342
                     /gene="proX"
                     /locus_tag="OQP62_003157"
     CDS             2347..3342
                     /gene="proX"
                     /locus_tag="OQP62_003157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     substrate-binding protein ProX"
                     /protein_id="HCS1722635.1"
                     /translation="MRHTVIFASAFATLVTASAFAADLPGKGITVQPIQSTISEESFQ
                     TLLVSRALEKLGYTVNKPSEVDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKK
                     FYREGVFVSGAAQGYLIDKKTAEQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPG
                     WGCEAVINHQNKAFDLQKTVEVSHGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVM
                     KPGKDVVWLQVPFSSLPGEQKNIDTKLPNGANYGFPVNTMHIVANKAWAEKNPAAAKL
                     FAIMKLPLADINAQNAMMHAGKSSEADVQGHVDGWINAHQQQFDGWVKEALAAQK"
     gene            3507..4691
                     /locus_tag="OQP62_003158"
     CDS             3507..4691
                     /locus_tag="OQP62_003158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1722636.1"
                     /translation="MTKPTHGLSPALIVLMSVATGLAVASNYYAQPLLDTIAHHFSLS
                     ASSAGFIVTAAQLGYAAGLLFLVPLGDMFERRTLIVSMTLLAAGGMLITASSQSLSMM
                     ILGTALTGLFSVVAQILVPLAATLATPATRGKVVGTIMSGLLLGILLARTVAGLLANL
                     GGWRTVFWVASALMALMAVALWRGLPKLKSDTHLNYPQLLGSVFSLFIHDKLLRTRAL
                     LGCLTFANFSILWTSMAFLLAAPPFSYSEGMIGLFGLAGAAGALGARPAGGFADKGKS
                     HLTTTFGLLLLLLSWLAIWLGRTSVLALIIGILVLDLTVQGVHITNQTVIYRLHPDAR
                     NRLTAGYMTSYFIGGAAGSLISASAWQHAGWAGVCLAGVTVALLNLLVWWRGFHRQEA
                     VN"
     gene            5188..5718
                     /gene="mprA"
                     /locus_tag="OQP62_003159"
     CDS             5188..5718
                     /gene="mprA"
                     /locus_tag="OQP62_003159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor MprA"
                     /protein_id="HCS1722637.1"
                     /translation="MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQGKLLENR
                     NKMLKAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIE
                     RRESDNDRRCLHLQLTEKGQAFLQEVLPPQHHCLHQLWSSLSTAEKDQLEHITRKLLT
                     RLDQMEQEGTVLEALR"
     gene            5845..7017
                     /gene="emrA"
                     /locus_tag="OQP62_003160"
     CDS             5845..7017
                     /gene="emrA"
                     /locus_tag="OQP62_003160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter periplasmic
                     adaptor subunit EmrA"
                     /protein_id="HCS1722638.1"
                     /translation="MSANAEIQPPQQPAKKKGKRKTALLLLTLLFVIIAVAYGIYWFL
                     VLRHIEETDDAYVAGNQVQIMAQVSGSVTKVWADNTDFVKEGDVLVTLDQTDAKQAFE
                     RAKTALASSVRQTHQLMINSKQLQANIDVQKTALAQAQSDLNRRVPLGNANLIGREEL
                     QHARDAVASAQAQLDVAIQQYNANQAMILNSNLEDQPAVQQAATEVRNAWLALERTRI
                     VSPMTGYVSRRAVQPGAQISPTTPLMAVVPATDLWVDANFKETQLANMRIGQPVTIIT
                     DIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRVELDARQLEQHP
                     LRIGLSTLVTVDTANRDGQVLASQVRTTPVAESNAREINLAPVNKLIDDIVQANAG"
     gene            7034..8572
                     /gene="emrB"
                     /locus_tag="OQP62_003161"
     CDS             7034..8572
                     /gene="emrB"
                     /locus_tag="OQP62_003161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter permease
                     subunit EmrB"
                     /protein_id="HCS1722639.1"
                     /translation="MQQQKPLEGAQLIIMTIALSLATFMQVLDSTIANVAIPTIAGNL
                     GSSLSQGTWVITSFGVANAISIPLTGWLAKRFGEVKLFMWSTVAFAAASWACGVSSSL
                     NMLIFFRVVQGVVAGPLIPLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGY
                     ISDNYHWGWIFFINVPIGIAVVLMTLHTLRGRETHTERRRIDAVGLALLVIGISSLQI
                     MLDRGKELDWFSSQEIIILTVVAVIAISFLIVWELTDDHPIVDLSLFKSRNFTIGCLC
                     ISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGIIPVILSPIIGRFAHKLDMR
                     RLVTFSFIMYAVCFYWRAWTFEPGMDFGASAWPQFIQGFAVACFFMPLTTITLSGLPP
                     ERLAAASSLSNFTRTLAGSIGTSITTTMWTDRESLHHAQLTESVTAYNPNAQAMYDKL
                     EGLGMTHQQASGWIAQQITNQGLIISANEIFWMSAGIFLVLLGLVWFAKPPFGAGGGG
                     GGAH"
     gene            complement(8621..9991)
                     /locus_tag="OQP62_003162"
     CDS             complement(8621..9991)
                     /locus_tag="OQP62_003162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HCS1722640.1"
                     /translation="MKAKYLALMIGACFSHNLWAANDITIEQRLAELEQRVVNAEKRA
                     SDAEAQIRSLKQQQVAATPTVNVQSAEPIAADKTPPKLTLSGFSDIKFYGDVEFNMDA
                     ASRSGSLTSMRTSANKDWASGTNERWDINGRLLLGFDGYQRLDNGNFAGFSVQPLADL
                     TGKMNLDDAVFFFGRENDWKIKVGRFEAYDMFPLNQDTFIEYSGNTANDLYSDGYGYI
                     YMMKEGRGRSDSGGNFLLSKTIDNWYFEVNTLLENGSTLYTEKQYHGMDLTNDKNVAY
                     VRPVIAWQNGRFSTAIAMESNVVNNAYGYYENGKWIDQSDRTGYGFTMTWNGQKTDPE
                     DGAVINLNTAYMDATDETDFTAGVNALWHRFELGYIYAHNKIEAFNATNIDAVCEDDC
                     WITDPGNYDIHTIHASYLFPNVMDMKNFNIYLGAYASWVEANPNNGDNSEDARYGGRL
                     RFKYFF"
BASE COUNT         2256 a         2709 c         2675 g         2513 t
ORIGIN      
        1 caggaatcat tctattgcat ggcaattaaa ttagaagtga agaatctgta taaaatattt
       61 ggagagcatc cgcagcgtgc cttcaaatat attgaaaagg gactatcgaa agagcaaata
      121 ctggaaaaaa cggggctatc gcttggcgtt aaagacgcca gtctggccat tgaagaaggc
      181 gagatatttg tcatcatggg attatccggc tcgggtaaat ccacaatggt acgccttctc
      241 aatcgcctga ttgaacccac ccgcgggcag gtactgattg acggtgttga tattgccaaa
      301 atatcagacg ctgagcttcg cgaggtgcgc aggaaaaaga ttgcgatggt cttccagtca
      361 tttgcgctca tgccgcatat gaccgtgctg gataatacgg cattcggtat ggaattagcg
      421 ggcatcgcgg cgcaagagcg tcgcgaaaag cgctggacgc cttgcgtcag gtggggcttg
      481 agaattacgc tcacgcctat ccggatgaac tttccggtgg gatgcgtcag cgtgttgggc
      541 ttgcccgcgc gctggcaatc aaccctgata tcttattaat ggatgaagcg ttttccgccc
      601 tcgatccatt aattcgtacc gaaatgcagg atgagctggt gaaattacag gcgaaacatc
      661 agcgcaccat tgtctttatt tcccacgatc ttgatgaggc tatgcgtatt ggcgacagga
      721 ttgccattat gcaaaatggc gaggtcgtac aggttggtac gccggatgag atcctgaata
      781 atccggcaaa tgattatgtc cgcacgttct tccgtggcgt ggatattagt caggtcttta
      841 gcgccaaaga tattgcccgt cgcagtccgg tcggcttaat tcgtaaaacg ccaggttttg
      901 gtccccgttc ggcactgaaa ttattacagg atgaagaccg tgaatatggt tacgtcattg
      961 agcgtggcaa taaattcgtg ggcgtcgtgt ccatcgactc attaaaagcg gcattaagcc
     1021 aggcgcaagg gattgaagcg gcgcttatcg acgacccttt agtcgttgat gcgcaaaccc
     1081 cactcagcga gttgctctct cacgtcggcc aggcgccctg cgcggtgccg gttgtcgatg
     1141 aagaacacca gtatgttggc attatttcaa aacgtatgtt gctacaggct ttagatcgcg
     1201 aggggggtaa caatggctga tcaaacgaat ccgtgggata ccgcacaggt ggccgatacg
     1261 acgacgcaaa cggctgatgc ctggggaaca ccggcaggcg tagccacgga cggcggcagt
     1321 accgactggt tgaacagcgc gcccgcgcca gcccctgaac acttttctct tctggacccg
     1381 ttccataaga cgcttatccc gctggatagc tgggtcacag agggaatcga ctgggtcgtc
     1441 acccatttcc gtcccctttt tcaggggatt cgtgtgccgg tggattacat ccttaacggc
     1501 tttcagcaac tgctgctggg aatgcccgcc cctgtggcga ttattctctt tgcgctgatt
     1561 gcctggcagg tttccggtgt gggcatgggg atcgcggcgc tgatatcgct gatcgccatc
     1621 ggcgcgatcg gcgcctggtc gcaggcgatg attaccctgg cgctggtgct gaccgccctg
     1681 ttgttctgcg tcgtgatcgg attaccgatg ggaatctggc tggcgcgcag cccgcgcgcg
     1741 gccaaaatag ttcgtccgct gctggatgcg atgcagacca cgcccgcgtt tgtctatctg
     1801 gtgccgattg tcatgttatt cggcatcggt aacgtgccgg gcgtggtggt gacgattatt
     1861 tttgctctac cgccgattat acgcctgacg atcctgggca ttaaccaggt gcctgccgac
     1921 ttaattgaag cgtcgcgctc gttcggcgcc agcccgcgcc aaatgttgtt caaagtgcaa
     1981 ctaccgctgg cgatgcccac cattatggca ggcgttaatc agacgctgat gctggctctc
     2041 tcaatggtcg tcatcgcctc gatgattgcg gtcggtgggc ttggccagat ggtactacgc
     2101 ggcattggtc gtcttgatat ggggctggca accgtcggcg gcgtcggcat tgtgattctc
     2161 gccatcattc tggaccgtct gacgcaggcc gtcgggcgcg actcgcgtag ccgcggtaac
     2221 cgtcgctggt ataccaccgg tcctgttggg ctaatcaccc gccctttcgt taagtaactc
     2281 tcctgacgcc cggtgacatt gcgcttaccg ggcttacaac tccctaccat aattaaagga
     2341 acaacgatgc gacatactgt gatatttgcc tcagcgtttg ccacccttgt caccgccagc
     2401 gctttcgctg ccgacctgcc tggcaaaggc attaccgtcc aacctatcca aagcacgatt
     2461 tctgaagagt ccttccagac gttactggtc agccgggcgc tggaaaagtt gggttatacc
     2521 gtaaataagc cgagtgaagt cgattacaac gtaggctata cctccatcgc ctctggcgat
     2581 gcgacgttta ccgccgtgaa ctggcagccg ctgcatgatg atatgtatgc cgcagcaggc
     2641 ggagacaaaa agttttaccg cgagggcgtc ttcgtctccg gcgctgcgca gggctatctg
     2701 atcgataaaa aaaccgccga gcagtacaac atcactaata tcgctcaact aaaagatccg
     2761 aaaatcgcca aaatcttcga taccaatggc gacggaaaag cggacatgat gggctgctcg
     2821 ccgggctggg gctgcgaagc cgtaatcaat caccagaata aagcgtttga tctgcaaaaa
     2881 accgttgagg tcagccacgg taactatgcg gcgatgatgg ctgataccat tacccgtttt
     2941 aaagaaggca agccggtgct gtattacacc tggaccccgt actgggtgag cgacgtaatg
     3001 aagccgggta aagatgtcgt ctggctacag gtgccgttct cctccctgcc gggcgaacag
     3061 aaaaatattg atactaaact gccgaacggc gcgaactatg ggttcccggt caatactatg
     3121 catattgtcg ccaataaggc atgggcggag aaaaatccgg cggcggcgaa actgttcgcc
     3181 atcatgaagc tgccgctggc ggatatcaac gcgcagaacg ccatgatgca tgccggtaaa
     3241 tcgtctgaag ccgatgttca gggccacgta gacggctgga tcaacgccca ccagcagcag
     3301 tttgacggct gggtgaaaga agcgctggcc gcgcagaaat aatatcgttt tttatgccgg
     3361 ataaggcgca gttcatgcgc cgctatccgg ccaacgcaat ctctcctcaa agcgcacgat
     3421 tcatcacgtc actgttcccc tttattcatc aacatccgct atgattgttt tcccaggaaa
     3481 taattatcta aatcacgatt accataatga cgaaacccac tcatgggctt agcccggcgc
     3541 tgatcgtttt aatgtctgtg gccacgggtc tggcggtcgc cagcaactac tatgcccagc
     3601 cgctgcttga taccatcgcg catcactttt cgctttccgc cagctccgca gggtttatcg
     3661 ttaccgccgc gcagttgggc tatgccgctg gcctgttgtt tctggtgccg ctcggcgaca
     3721 tgtttgaacg ccgaacgctg attgtctcca tgacgttgct ggcggctggc ggaatgctga
     3781 tcactgccag cagtcagtcg cttagcatga tgatactcgg aacggcctta accggactgt
     3841 tctccgtggt ggcgcagatt ctggttccgc tggccgccac gcttgcgacg cccgccaccc
     3901 gcggtaaagt ggtcggcacc attatgagcg gcctgttgct ggggatcctg ctggcgcgaa
     3961 cggtcgccgg actgctggca aacctcggcg gttggcgcac cgtattttgg gtagcgtcgg
     4021 cgctgatggc gctgatggcc gtcgcgttgt ggcgcggact gccaaagctc aaatccgaca
     4081 cccatcttaa ctacccgcaa ctgttgggtt ctgtattcag cctgtttatt cacgataagc
     4141 tgctgcgtac ccgcgcgctg ctgggctgtc tgacctttgc taatttcagc atcctctgga
     4201 cgtcaatggc ctttttgctc gccgcgccgc cgtttagcta ttccgagggg atgattggcc
     4261 tgtttggcct ggcgggggcc gccggcgctt taggcgcgcg tccggctggc ggatttgccg
     4321 ataaaggtaa atctcacctc accaccacgt tcggcttact gctgctgtta ctctcctggc
     4381 tggctatctg gcttgggcgc acctcggtac tggcgctgat tattggtatt ctggtactgg
     4441 acctcaccgt tcagggggta catatcacca atcagacggt catctatcgt ttgcatccgg
     4501 atgcgcgtaa ccggctcacc gccggctata tgaccagcta ctttatcggt ggcgccgcgg
     4561 ggtcgctgat ttccgcctcc gcctggcaac atgccggctg ggccggcgtt tgtctggcgg
     4621 gtgtcacggt agccttactt aatttactgg tctggtggcg aggttttcac cgacaggaag
     4681 ccgtaaatta agcggatagt gagcgtttac ctttgtttaa gctccttagg gtgttaagga
     4741 gctccccagt ctgttaaggt tatgctattc atttatcatg gttattttta taccggtgaa
     4801 gaataatata attctatgga aagccctgca tccccatctg ctcccaggcc aatagcgccc
     4861 gttcaaggat tcgaaggtcg ttcaccgata gctattcgtg atattccggt ggcttttgca
     4921 tcgggttgta aggccgttta cccggctttc gcccctcccg cttatcgttc tctcctgatt
     4981 ttttcatgca ggcactcacg cttttctcgt cattcctgga tttgccgcag gcggcgcttt
     5041 accgggccca atgttcccgc tgacgtctca gtctgcgtat cattggttgc tttatagcct
     5101 gaaagaatga ttttgtatta ataatacatt tactttattt gtcactgtcg ttactatatc
     5161 ggctgaaatt aatgaggtca tgcccaaatg gatagttcgt ttacgcccat tgaacaaatg
     5221 ctaaaatttc gcgccagccg tcacgaagac tttccttacc aggaaattct tttgactcgt
     5281 ctttgtatgc acatgcaagg caagctcctg gaaaaccgca ataaaatgct gaaggctcaa
     5341 gggattaacg agacgttgtt tatggcgttg attacgctgg agtctcagga aaaccacagt
     5401 attcagccgt ctgaattaag ctgcgcgctg ggttcatctc gcaccaatgc gacacgcatt
     5461 gcagatgagc tggaaaaacg cggctggatt gagcgtcgtg agagcgataa cgaccgccgt
     5521 tgcctgcatc tgcaattaac ggagaaaggc caggcatttt tgcaagaagt gcttccgcct
     5581 cagcatcatt gtctgcatca actctggtca tcacttagca cagccgaaaa agatcaactt
     5641 gagcacatca ctcgtaaact cctgacgcgt cttgatcaaa tggagcagga aggcactgtt
     5701 cttgaggcgc tgcgctaaag cgccgacccg ctcaaaaatc cagattaata acaggaaagc
     5761 ggacaggccg gcacgcgtta ctgctggcct ttctgacaac aggtcggctc agccgatgtg
     5821 aataataaga tcgtggagaa caacatgagc gcaaatgcgg agatccaacc cccgcagcaa
     5881 ccggctaaga agaaaggcaa acgcaaaaca gcgctgctac ttcttacctt gctctttgtt
     5941 attattgccg tggcatatgg aatttattgg tttttagtat tgcgtcatat tgaagagaca
     6001 gatgatgctt acgtggcagg gaaccaggtt caaatcatgg cgcaggtgtc aggcagcgtg
     6061 acgaaagtct gggctgataa caccgacttt gtaaaagagg gcgatgttct ggtcacgctc
     6121 gatcagactg acgccaaaca agcgtttgaa agagccaaaa cggcgctggc ctccagcgtg
     6181 cgccagacgc accagttgat gattaacagt aagcagttgc aggcgaatat cgacgtgcaa
     6241 aaaaccgccc tggcgcaagc gcagagcgac cttaaccgtc gtgtgccgct gggtaatgcc
     6301 aatcttattg gccgggaaga gctgcaacac gcccgcgatg ccgtcgccag cgcgcaggca
     6361 cagcttgatg tcgccattca acagtacaat gccaaccagg caatgatact taacagtaat
     6421 ctggaagatc agcctgcggt tcaacaagcg gcgaccgaag tgcgtaacgc ctggctggcg
     6481 ctggagcgta ctcgcatcgt cagtccaatg accggttatg tctcccgccg cgccgtccag
     6541 cctggcgcgc agatcagccc caccacgccg ctgatggccg tggtgcctgc aaccgatctg
     6601 tgggtggacg ctaactttaa agagacccaa ttagcgaata tgcgcattgg gcagccagtg
     6661 acgattatta ctgacattta tggcgacgac gtaaaataca ccggtaaagt cgtcggtctg
     6721 gatatgggga caggtagcgc cttctccctg ctgcccgcgc aaaatgcgac gggtaactgg
     6781 attaaagtgg ttcaacgtct gccggtacgc gtcgaactgg acgcccgcca gttagaacaa
     6841 catccgctgc gcattggttt atcgacgctg gtcaccgtgg ataccgctaa tcgcgacggt
     6901 caggtactgg ccagccaggt acgaacgacg ccggttgccg aaagtaacgc acgcgaaatt
     6961 aatctcgcgc cggtcaataa actgatcgac gacatcgtac aggctaacgc gggttaatcc
     7021 tgaggtgcgt gtgatgcaac agcaaaaacc gctggaaggc gcgcagctca tcatcatgac
     7081 gatcgcgctg tcgctggcga cattcatgca ggtgctggac tccaccattg ccaacgtggc
     7141 gattccgacc atcgccggga acctgggttc ttccctaagc caggggacat gggttatcac
     7201 ctctttcggg gtggcgaacg ctatctcgat tcccttaacc ggctggctgg cgaagcgttt
     7261 tggcgaagtc aaactgttca tgtggtcgac ggtcgccttt gccgcggcct cctgggcctg
     7321 tggcgtatcc agcagcctga acatgctgat cttcttccgc gtggtgcagg gcgtggtcgc
     7381 cgggccgctg attccgctct cgcaaagcct gttgctgaat aactatccgc ctgcaaagcg
     7441 ctccattgcg ctggcgctct ggtcaatgac cgtcattgtc gcgccgattt gcggcccgat
     7501 tctggggggc tacatcagtg ataattacca ctggggatgg attttcttca tcaacgtgcc
     7561 gattggcatc gccgtcgtcc tgatgacgtt acacacgctg cgcggacgtg aaactcatac
     7621 cgaacggcga cgtattgacg ccgtcgggct ggcgttactg gtgattggca tcagcagcct
     7681 gcaaattatg ctcgaccgcg gtaaagagct ggactggttc tcctcgcagg aaattatcat
     7741 cctgaccgtg gtcgccgtca tcgccatcag tttcctgatc gtctgggaac tgaccgacga
     7801 tcaccctatc gtcgatcttt ctctttttaa atcgcgtaac ttcactattg gctgcctgtg
     7861 catcagcctt gcctatatgc tctatttcgg cgccattgtt ctattgccgc agcttttgca
     7921 agaggtgtac ggctataccg caacgtgggc aggtctggcg tcggcgccag tcggtattat
     7981 tccggtaatt ttgtcgccga ttatcggacg cttcgcgcat aaactggata tgcgcaggct
     8041 ggtcacattc agcttcatta tgtacgccgt ctgtttttac tggcgcgcct ggacgttcga
     8101 accgggtatg gatttcggcg cttccgcatg gccgcagttt attcaaggat ttgccgtcgc
     8161 ctgcttcttt atgccgctga ccaccattac gctctccggg ttaccgcccg aacggctggc
     8221 ggcggcatca agcctgtcga acttcacgcg aacgctggcg ggctccattg gcacctcgat
     8281 taccaccact atgtggaccg atcgtgagtc gctacaccat gcgcagctca ccgagtcggt
     8341 tacggcgtat aatccaaacg ctcaggctat gtacgataaa ctggaaggct tagggatgac
     8401 gcaccaacag gcgtcaggct ggatagccca gcaaatcacg aatcaggggc tgattatttc
     8461 cgccaacgaa atcttctgga tgtcggcggg gatcttcctg gtgctgctcg gcctggtgtg
     8521 gttcgccaaa ccgcccttcg gtgcgggcgg cggcggcggt ggcgcgcact aactatctga
     8581 taaaagggat ctacggatcc cttttttagt agaccaacaa tcagaagaaa tatttgaatc
     8641 tcagacgccc gccgtaacgc gcatcttcac tgttatcgcc attattcgga ttggcctcta
     8701 cccatgaagc ataggcgccg aggtagatgt taaagttttt catatccatc acgttgggga
     8761 ataaatatga ggcatgaata gtgtggatgt cataattgcc gggatcggtg atccagcaat
     8821 cgtcctcaca aacggcatcg atattggtag cattaaaggc ttcgattttg ttatgcgcat
     8881 agatataacc cagttcaaat cgatgccaca gcgcattcac cccagcggta aaatctgtct
     8941 catcggtcgc atccatataa gcggtattca ggttaataac tgcgccatct tccgggtcag
     9001 ttttttgacc attccaggtc atggtaaaac catagcccgt acgatctgac tgatcgatcc
     9061 acttcccatt ctcataatag ccataggcgt tgttaacgac gttactttcc atcgctatcg
     9121 ccgttgaaaa acgcccgttt tgccaggcaa taaccggacg gacgtaagcc acgtttttat
     9181 cgttggttaa atccattccg tggtactgct tctcggtata taacgtactg ccattttcca
     9241 gcaatgtgtt aacttcgaaa taccagttgt cgatggtttt gctcagcagg aagttacccc
     9301 cactgtcgct acgtccccgt ccttctttca tcatatagat atagccgtaa ccgtcactgt
     9361 aaagatcgtt cgctgtattc cccgaatatt caataaatgt atcctgattc agcgggaaca
     9421 tatcgtaggc ttcaaaacga ccaaccttaa ttttccagtc attctcacga ccaaagaaga
     9481 aaacggcatc atcaaggttc attttcccgg tcagatccgc cagaggctgt acagagaatc
     9541 cggcaaaatt accgttgtcc agccgctggt agccatcaaa gcccagcaac aggcgcccgt
     9601 taatatccca gcgttcattg gttcctgatg cccaatcttt attcgctgac gttctcatcg
     9661 aggtcaggct accggaacgg cttgccgcat ccatattaaa ttcgacatcg ccatagaact
     9721 taatatcgct gaatccggat aaggtcagct tcggcggcgt tttatctgct gcaatgggct
     9781 cggcggactg gacattcacc gtcggtgtag cggcgacctg ctgctgtttc agcgagcgaa
     9841 tttgcgcctc ggcatcggat gcccgttttt cagcattaac aacacgttgc tccagttcag
     9901 ccagacgctg ctcaatagtg atatcattcg ctgcccaaag gttatgagaa aagcaagcac
     9961 cgatcatcag cgccaaatat ttagccttca ttttttatcc cttaagtttg atgtatacca
    10021 gataagattt gctaaaaacc ccatcgaccg gctattagta gagtcttgtt attacctgga
    10081 tatctggcgc attccattat gtttttctat taattattta tgatttttag tttatgtgat
    10141 caatacactc tgg
//
LOCUS       DAJVSD010000164        10130 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.164, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000164 DAJVSD010000000
VERSION     DAJVSD010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10130
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.164"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(344..419)
                     /locus_tag="OQP62_003163"
     tRNA            complement(344..419)
                     /locus_tag="OQP62_003163"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(384..386),aa:Thr,seq:cgt)
     gene            complement(535..1785)
                     /gene="proA"
                     /locus_tag="OQP62_003164"
     CDS             complement(535..1785)
                     /gene="proA"
                     /locus_tag="OQP62_003164"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HCS1722641.1"
                     /translation="MLEQMGIAAKAASYKLALLSSCEKNRVLEKIADELEAQMESILS
                     ANVQDVEQARANGLSEAMLDRLALTPARLKAIADDVRQVCNLADPAGQVIDGGLLDSG
                     LRLERRRVPLGVVGVIYEARPNVTVDVASLCLKTGNAVILRGGKETHRTNAATVLVIQ
                     KALKACDLPEAAVQAIDNPDRSLVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVI
                     TGGIGVCHIFVDSSADIAPALKIIVNAKTQRPSTCNTVETLLVHQDIAERFLPALSKQ
                     MAESGVTLHGDETVMQALHGPAKLVALKPEELDNEFLSLDLNVVVVENMDGAIAHIRE
                     HGTQHSDAILTCDMHNAARFVNEVDSAAVYVNASTRFTDGGQFGLGAEVAVSTQKLHA
                     RGPMGLEALTTYKWIGFGDGTIRA"
     gene            complement(1797..2900)
                     /gene="proB"
                     /locus_tag="OQP62_003165"
     CDS             complement(1797..2900)
                     /gene="proB"
                     /locus_tag="OQP62_003165"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HCS1722642.1"
                     /translation="MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHR
                     IVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHIGQML
                     LTRADMEDRERFLNARDTLRALLDNHIVPVINENDAVATAEIKVGDNDNLSALAAILA
                     GADKLLLLTDQQGLFTADPRSNPQAELIKDVYGVDDALRSIAGDSVSGLGTGGMSTKL
                     QAADVACRAGIDTIIASGSKPGVIGDVMEGISVGTRFHAQASPLENRKRWIFGAPPAG
                     EITVDEGATAAMLERGSSLLPKGIKSVTGNFSRGEVIRICNLQGRDIAHGVSRYNSDA
                     LRRIAGHHSQQIDAILGYEYGPVAVHRDDMITR"
     gene            3183..4235
                     /gene="phoE"
                     /locus_tag="OQP62_003166"
     CDS             3183..4235
                     /gene="phoE"
                     /locus_tag="OQP62_003166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoporin PhoE"
                     /protein_id="HCS1722643.1"
                     /translation="MNKSTLAIVVSIIASASVHAAEVYNKNGNKLDVYGKVKAMHYMS
                     DYDSKDGDQSYVRFGFKGETQINDQLTGYGRWEAEFAGNKAESDSSQQKTRLAFAGLK
                     LKDIGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFG
                     IVDGLDLTLQYQGKNEDRDVKKQNGDGFGTSVSYDFGGSDFAVSGAYTLSDRTREQNL
                     QRRGTGDKAEAWATGVKYDANDIYIATFYSETRNMTPVSGGFANKTQNFEAVIQYQFD
                     FGLRPSLGYVLSKGKDIEGVGSEDLVNYIDVGAIYYFNKNMSAFVDYKINQLDSDNTL
                     GINDDDIVAIGLTYQF"
     gene            complement(4286..4687)
                     /gene="crl"
                     /locus_tag="OQP62_003167"
     CDS             complement(4286..4687)
                     /gene="crl"
                     /locus_tag="OQP62_003167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-binding protein Crl"
                     /protein_id="HCS1722644.1"
                     /translation="MTLPSGHPKSRLIKKFTALGPYIREGQCEDNRFFFDCLAVCVNV
                     KPAPEKREFWGWWMELEAQEKRFTYRYQFGLFDKEGNWTVVPINETEVVERLEYTLRE
                     FHEKLRDLLISMELALEPSDDFNDEPVKLSA"
     gene            complement(4745..5989)
                     /gene="frsA"
                     /locus_tag="OQP62_003168"
     CDS             complement(4745..5989)
                     /gene="frsA"
                     /locus_tag="OQP62_003168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase FrsA"
                     /protein_id="HCS1722645.1"
                     /translation="MTQANLSETLFKPRFKHTETSTLVRRFNRGSQPPMQSALDGKNV
                     PHWYRMINRLMWIWRGVDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA
                     KQAMDWQQKACQEQDAMRSGRYWLHASTLYNIAAYPHLKGDELAEQAQALANRAYEEA
                     AQRLPGSLREMEFAVPGGSPVTAFLHMPKGDGPFPTVLMCGGLDAMQIDYYTLYERYF
                     APRGIAMLTLDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA
                     NVAVRLAYLEAPRLKAVACLGPVVHALLSDPQRQSTVPEMYLDVLASRLGMHDASDEA
                     LRVELNRYSLKVQGLLGRRCPTPMLSGFWKNDPFSPEEESRLITTSSSDGKLIEIPFN
                     PVYRNFDHALQEITDWINHRLC"
     gene            complement(6078..6536)
                     /gene="gpt"
                     /locus_tag="OQP62_003169"
     CDS             complement(6078..6536)
                     /gene="gpt"
                     /locus_tag="OQP62_003169"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HCS1722646.1"
                     /translation="MSEKYVVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA
                     LLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIRE
                     MYPKAHFVTIFAKPAGRPLVDDYVIDIPQNTWIEQPWDMGVVFVPPISGR"
     gene            6785..8242
                     /gene="pepD"
                     /locus_tag="OQP62_003170"
     CDS             6785..8242
                     /gene="pepD"
                     /locus_tag="OQP62_003170"
                     /EC_number="3.4.13.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosol nonspecific dipeptidase"
                     /protein_id="HCS1722647.1"
                     /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIVSWAKEKG
                     LYVDRDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNSDTVHDFTTDPIRPYIDG
                     EWVKARGTTLGADNGIGMASALAVLADDNVVHGPLEVLLTMTEEAGMDGAFGLQSGWL
                     QADILINTDSEEEGEIYMGCAGGIDFTSNLPLTREAVPAGFACFKLTLKGLKGGHSGG
                     EIHLGLGNANKLLARFLAGHAEELDLRLIDFNGGTLRNAIPREAFATLAVATDNVGAL
                     KTLVNAYQDILKNELAEKEKNLTLQLNEVASDKAALTAPSRDTFVRLLNATPNGVIRN
                     SDVAKGVVETSLNVGVVTMSDANVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA
                     KGSYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPDMDMVSIG
                     PTITGPHSPDEQVHIESVGHYWTLLTELLKAIPAK"
     gene            complement(8397..9011)
                     /locus_tag="OQP62_003171"
     CDS             complement(8397..9011)
                     /locus_tag="OQP62_003171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor H"
                     /protein_id="HCS1722648.1"
                     /translation="MILLQLSSAQGPDECCLAVKKALDCLTKEAAREKVSLTRLETEP
                     GRLPDTLRSALVSLDGEKAMAFSERWCGTLLWICTSPYRPHHGRKNWYVGIGRFSADE
                     HIQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLL
                     IAWRLEQQRQNECAALKSERRLFHHQIERGNPLRIFKGMAFTPQ"
     gene            complement(9008..10117)
                     /locus_tag="OQP62_003172"
     CDS             complement(9008..10117)
                     /locus_tag="OQP62_003172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004129194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA ligase RtcB family protein"
                     /protein_id="HCS1722649.1"
                     /translation="MVFSIASDNLWIEDSAIQQLYTTAKLTGMKRVIGMPDLHPGRGY
                     PIGAAFFSRGRFYPALVGNDIGCGMALWQTDILGRKYNADKLEKRLASLPDVADAQWL
                     EENVPAVMQHHSWRSALGSIGGGNHFAELQQVDRIVDADSFALSGLQKAQLLLLVHSG
                     SRGLGQAILRRHVEAFSHNGLPEDSDDARHYLAEHDDALAFARSNRALIARRILQQLR
                     AEGEPRLDVAHNFVEPCTVAGEAGWLHRKGATPDGQGLVIIPGSRGDYSWLVKPVVSE
                     ESLFSLAHGAGRKWMRTECKDRLSAKFTPRQLCRTGMGSRVICRDRQLIYEEAPQAYK
                     SIDSVVDCLADAGLITPVACLRPVLTLKTSGEKSA"
BASE COUNT         2462 a         2794 c         2543 g         2331 t
ORIGIN      
        1 ggaacattta agatttaaaa caagcagtat cgtgttattt tcaaaaacaa gggcataatg
       61 attgctggca gatgaacata acgggaataa cgcgagaaga agaattatta tcaatttcat
      121 attattatat agactccgtc aaagaaaact ttcatttcac ttgttcttct gttaactcac
      181 cctttcattt cacgcccctg agaatagcga aaggcatacc atgcagaatg aatgctttcc
      241 gaactgacgt cctcacagac atccatacca tgccaaacaa gtacgcgaga aagaaaatga
      301 gaagattgtt atgaaagaaa agtttgtaac cgcttgattg agatggtgcc gataatagga
      361 gtcgaaccta cgaccttcgc attacgaatg cgctgctcta ccaactgagc tatatcggcc
      421 ctgagaaggg tgtgttcacg cgggtgaatc acggggtaga aggttaaaac taaccgggcg
      481 gtgcgtcaat agccttgcta ctcaaccggc tatttttgca ccgctcgtca ttaattacgc
      541 acgaatcgta ccatcgccaa agcctatcca cttataggtg gtaagcgctt caagccccat
      601 cggaccgcgg gcatgtaatt tctgcgtgct gaccgccact tctgcgccaa gcccaaactg
      661 cccgccatcg gtaaaacggg tagaggcgtt gacataaacc gcagcggaat ctacttcgtt
      721 cacgaaacgc gcagcattat gcatatcgca cgttaaaatc gcatcggagt gctgagtgcc
      781 atgttcgcga atgtgggcga tagcgccatc catattttcg accaccacaa cgttcagatc
      841 cagagacaga aactcgttat ccagctcttc cggtttcagc gccaccagtt tggcagggcc
      901 atgcagtgcc tgcatgacgg tttcatcccc atgcaacgtt acgccactct ccgccatctg
      961 cttgctcagc gcaggcaaaa agcgttctgc gatgtcctga tgcaccagca aggtttccac
     1021 cgtgttacag gtgctcgggc gctgggtttt agcgttgacg ataatcttca gcgctggggc
     1081 gatgtctgcg ctgctatcga caaaaatatg gcacacgcca atcccgccgg taatcaccgg
     1141 aatggtggat tgctcgcggc agagtttatg caagcctgcg ccgccgcgcg ggatcagcat
     1201 atcgatgtac ttatccatac gcagcatttc actgaccagc gaacgatccg gattatcaat
     1261 cgcctgaacc gccgcttccg gtaaatcgca agctttcagc gccttctgaa tgacaagaac
     1321 ggttgcggca ttcgtgcgat gcgtctcttt cccaccgcgt agaatcaccg cattaccggt
     1381 tttcagacac aaagaagcca catcaacggt aacattcgga cgcgcctcat agataacgcc
     1441 aaccacgccc aacggcacgc ggcggcgctc cagacgcagg ccgctgtcca gcagaccgcc
     1501 gtcgatcacc tgcccggccg ggtcggcgag attacagacc tggcgcacat cgtcagcaat
     1561 cgctttcaga cgcgcagggg tcagcgccag gcggtccagc atcgcttcgc tcaggccatt
     1621 ggctcgcgcc tgctcaacat cttgtacgtt cgcgctgagg atactttcca tttgcgcttc
     1681 cagttcatcg gctatttttt ccagcacgcg atttttttcg cagctggaga gcagcgccag
     1741 cttatacgac gccgctttag cagcaatgcc catttgttcc agcatatgcc tgttccttat
     1801 cgagtaatca tgtcatcacg atgaacagcg accgggccat attcatagcc cagaatcgca
     1861 tcgatttgtt gagagtggtg accggctatc cgccgcagag catcactgtt ataacggctg
     1921 acgccatgag cgatatcacg cccttgcagg ttacaaattc tgatgacctc cccccgcgaa
     1981 aaattgcccg tcacgctttt gatgcctttt ggcagaagtg aactgccacg ttccagcatt
     2041 gccgcggtcg cgccttcatc aaccgtaatt tcgcctgccg gcggcgcgcc gaagatccaa
     2101 cgtttgcggt tctccagcgg cgaggcttgc gcatgaaaac gggtgccgac ggaaatcccc
     2161 tccatcacat cgccgatcac gcccggttta ctgcctgagg caataatcgt atcaataccc
     2221 gcgcgacagg ccacgtctgc cgcctgaagc ttagtgctca taccaccggt tcccagcccg
     2281 gaaacgctgt ctcccgcgat agagcgcagc gcatcgtcaa cgccatacac atctttgata
     2341 agctccgcct gcggattgct acgcggatcg gcggtaaata atccttgctg atcggtcagc
     2401 agcagcagtt tatccgcgcc tgccaggatc gccgccagcg cggagaggtt atcgttgtcg
     2461 cccactttaa tttccgctgt cgcaacggca tcattttcat tgataaccgg cacaatatgg
     2521 ttatccagta acgcacgcag cgtatcgcgg gcgttcagaa agcgctctct gtcttccata
     2581 tccgcacgcg tcaacagcat ctgcccgata tggataccgt aaattgaaaa caactgctcc
     2641 cacagttgaa tcagacggct ttgccctacc gccgccagaa gctgtttaga ggcaattgtt
     2701 gccggcagtt ccgggtagcc gagatgttca cgtccggcgg caatcgcgcc agaggtaacg
     2761 ataacaatac gatgtcccgc ggcgtgtagc tgcgcgcact ggcggacaag ttctacgata
     2821 tgggcacggt tcaggcggcg cgatccgcct gttagcacgc tggtgccgag ttttacgacc
     2881 agcgtctggc tgtcactcat gattctctgc cgttcaaaat aagaaataaa gaccaaatga
     2941 acgttttagc aggactggct ccggttgcca acaacctgta cgcgtagcgt gaaattttgt
     3001 tgcgcaggat cagcaagcgt agcggcggaa tttgaccatt ttattaccgc aacaattaaa
     3061 tatatttttt taaaaaaact ctcactttgt cataaatctt tcattaccga acgttaaaaa
     3121 ccttcctgtt ttttaccggg tctcccgaca aatcatagcg cgtaattaaa acaggaatgg
     3181 aaatgaataa gagcactctg gcaatagtgg tgagtatcat cgcatcagca tctgttcacg
     3241 ccgccgaggt ttacaataaa aacggtaata agcttgatgt gtatggaaaa gttaaagcca
     3301 tgcactatat gagcgattat gacagcaaag atggcgatca aagctacgtt cgttttggtt
     3361 ttaaaggcga aacgcaaatt aacgatcaat tgaccggcta cgggcgctgg gaagctgagt
     3421 ttgccggtaa taaagccgaa agtgattcgt cccagcaaaa aacccgcctg gcctttgctg
     3481 gtctgaaatt aaaagatatc ggttcttttg actatggacg taacctgggc gcgctgtacg
     3541 atgttgaggc ctggacggat atgtttcccg aattcggcgg cgactcttcc gcccagaccg
     3601 ataattttat gactaaacgc gccagcgggc tggcgactta ccgcaatacc gatttcttcg
     3661 gcatcgttga tggactggat cttaccttac agtatcaggg gaaaaacgaa gatcgcgatg
     3721 tgaaaaagca aaacggcgac ggcttcggca cttccgtgag ctatgatttc ggcggcagtg
     3781 attttgccgt cagcggcgct tatactctct ccgatcgcac cagggagcaa aatctgcagc
     3841 gccgcggtac gggcgataaa gccgaagcct gggctacggg tgttaagtat gacgcgaatg
     3901 atatttatat tgcgactttc tattcagaaa cccgcaacat gacgccagtt tccggcggat
     3961 ttgccaataa aactcaaaac ttcgaagcgg ttatccagta tcagtttgac tttggtctgc
     4021 gtccgtcatt aggctatgtg ctgtcaaaag gcaaagatat tgagggcgtc ggcagtgagg
     4081 atttggtgaa ttacattgac gttggcgcaa tctattattt caacaaaaat atgtccgcgt
     4141 ttgtagatta caaaatcaat cagcttgata gcgataacac gttaggcatt aatgacgatg
     4201 atattgtggc aatagggttg acctaccagt tctgataagt cgcattgtgc ctgatggcgc
     4261 tacgccatca ggcatggcag cagggttatg ccgacagttt taccggctcg tcgttgaaat
     4321 cgtcagacgg ctccagcgcc agctccatag aaatcagcag gtcgcgtagc ttttcatgaa
     4381 actcgcgtag cgtgtattcc agtcgctcca ccacttcggt ttcgttaatc ggcactacgg
     4441 tccagttgcc ctctttatca aacaaaccaa actgataacg ataagtgaag cgtttctctt
     4501 gtgcttccag ctccatccac cagccccaaa attcacgctt ctctggcgcg ggcttcacgt
     4561 tgacgcaaac tgccaggcaa tcgaaaaaaa aacgattgtc ttcgcactgc ccttcccgga
     4621 tataggggcc aagcgcggta aatttcttga tcaatctact tttcgggtgt ccactcggta
     4681 acgtcattgc gatctccttt aatgaagcaa ctgttttacc aaatcaatag aatttatcaa
     4741 tctattaaca caatctatga ttaatccagt cggtaatttc ttgcagcgcg tggtcaaaat
     4801 tgcggtacac cgggttaaaa gggatctcta tcagcttacc gtctgaagat gatgttgtaa
     4861 ttaagcgaga ctcttcttcc gggctgaaag gatcgttttt ccagaagccg gaaagcattg
     4921 gcgtaggaca acgtctgccc agtagcccct gtactttcaa cgaatagcgg ttgagctcca
     4981 cacgcagcgc ctcatccgaa gcatcatgca tacccagacg gctggccagc acatccagat
     5041 acatctccgg cactgtgctc tgtcgttgcg gatcgctaag tagcgcatgg accaccggcc
     5101 ccaggcaagc caccgctttc aaacgcggcg cttccagata ggccagacgc accgcaacgt
     5161 tggcgccaaa acggaaacca aacgccgcaa cacgggtatg atccacccag gggacattag
     5221 gaagcgcttt taacacatgc tggtggagca agctggaatc ctgggttaat ttccactttg
     5281 atgaaaatcc aaccgaaggc atatcaagcg ttaacatcgc gataccgcgc ggcgcgaaat
     5341 agcgttcata cagggtgtaa tagtcgattt gcatggcgtc caggccgccg cacatgagca
     5401 ccgtcggaaa cggaccatcc cctttcggca tatgtaaaaa cgcggtgaca ggcgaaccgc
     5461 caggaacggc aaattccatt tcacgtaacg agcctggcaa ccgctgcgcg gcctcttcat
     5521 aggcgcgatt cgccagcgcc tgcgcctgct ccgccagctc atcgcccttc aaatgcgggt
     5581 aggcggcaat gttatagagc gttgaggcat gaagccagta gcgtccgctg cgcatggcgt
     5641 cctgttcctg acaggctttc tgctgccagt ccatcgcctg ctttgcccac tcataaatcc
     5701 agttgccgcc gcggtaaccg atgaccgtat cgtataaatc atcatccgtt cgctctgcgt
     5761 cgctcatcac aatgcgcgcc tgcacatcaa ggatttctcg tgggtcaacg ccgcgccaaa
     5821 tccacatcag gcggtttatc atgcgatacc aatgcgggac gttcttaccg tccagcgcgg
     5881 attgcatggg cggctgcgac ccacgattga accgacggac aagggtagac gtttcagtat
     5941 gtttaaagcg gggtttgaac agggtttcgc tgaggttagc ctgtgtcatt cgtgcagcct
     6001 ccttggatac tcatagaggc ttattgtaac caataaaaca gcgcccggca ttgccgggcg
     6061 ctctgaaaag ctgctgatta acgacctgaa atcggcggta caaataccac acccatatcc
     6121 cagggctgct caatccaggt gttctgagga atatcaataa cataatcatc aaccagcgga
     6181 cggcccgccg gtttagcgaa aatcgtgacg aaatgcgctt tagggtacat ttcgcgaatc
     6241 gcgacggcgg tgccgccggt atcgaccaga tcgtcgatga cgataaagcc ttcgccatcg
     6301 ccttctgcac gtttcagcac tttcagttcg cgctggttat cgtgatcgta gctggagatg
     6361 catacggtat cgacatgacg aatgcccaat tcacgcgcca gtagtgcgcc cggtacaagg
     6421 ccgccacgac ttacggcaat aatgcctttc cattgttctg aaggcatgag gcggctcgcc
     6481 agtttgcgtg cgtgaatctg caacatgtcc caggtgacga cgtatttttc gctcatgtga
     6541 agtgtcccag cctgtttatc tacggcttaa aaagtgttcg agggggaaat agttgcgcga
     6601 gattatagag acctgacgcg ctaaaaacca gtgtttagcg gaatccacgc ctctttttgt
     6661 atgctttata ctacccgcag gcggagaaag tggtattctc agtcgcatct cgtaagagtt
     6721 attaattccg ctaaccctgt ggcctgtaag aacgtttttc agaccaccgc caaggagact
     6781 tatcgtgtct gaactgtctc agttatcacc acaacctttg tgggatattt ttgccaaaat
     6841 ctgttctatt cctcacccgt cctatcacga agagcaactc gcggaacata ttgtgagttg
     6901 ggccaaagag aaaggccttt acgtggatcg cgaccaggtc ggtaatattc tgatccgtaa
     6961 gcccgccact gcaggtatgg aaaatcgcaa gccggtcgtt ttacaggcgc atctggatat
     7021 ggtgccgcaa aaaaatagcg acaccgttca cgacttcact acagatccca tccggcctta
     7081 tattgatggc gaatgggtta aagcgcgcgg tactacgctc ggcgccgaca atggtattgg
     7141 aatggcttct gcgttagcgg tactggctga cgataatgtc gtccatggcc cgctggaagt
     7201 gctgctgacc atgaccgaag aagcgggcat ggatggcgcg ttcggcctcc agtccggctg
     7261 gttgcaggct gacatcctga tcaacaccga ctctgaagaa gaaggtgaga tctatatggg
     7321 ctgcgcaggc ggcatcgatt ttacctctaa tctgccgttg acccgtgaag ctgtacccgc
     7381 aggatttgca tgctttaagc taaccctgaa aggtctgaaa ggcggccact ccggtggtga
     7441 aattcacctc ggccttggca atgccaacaa attgctggcg cgttttctgg ccgggcacgc
     7501 agaagaactg gatctgcgtc tgatcgattt caacggcggc acgctgcgta acgcgattcc
     7561 gcgcgaagcg ttcgctaccc tcgccgttgc cacagacaac gtaggcgctc tgaaaacatt
     7621 agtgaacgct taccaggata ttctgaaaaa cgaactggcg gaaaaagaga aaaacctgac
     7681 gctgcaactc aatgaggttg ccagtgataa agccgcattg accgcgccgt cacgcgatac
     7741 ctttgtgcgc ctgctgaacg caacgccgaa cggcgtgatc cgcaattcag acgtggcgaa
     7801 aggcgtagtg gaaacatcgc tgaacgttgg cgtggtcaca atgtctgatg cgaatgtcga
     7861 aattcactgc ctgattcgct ctcttatcga cagcggtaaa gattatgtgg tgagtatgct
     7921 ggattcgctg ggcaagctgg ctggcgcgaa aaccgaagca aaaggcagct atccgggctg
     7981 gcagcccgat gcgaactcgc cggtcatgca cctggtgcgg gaaacctatc agcgtctgtt
     8041 caacaagaca ccgaacatcc agattatcca cgccggcctg gaatgcggtc tgtttaagaa
     8101 accctatccg gatatggaca tggtttctat tgggcctacc attaccggac ctcactctcc
     8161 ggatgagcag gtacatatcg aaagcgtggg ccactactgg actctgctga ccgaattgct
     8221 gaaagcgatt cctgcgaagt aagaaagcgc taaaatgccc gtctcatttc tggacgggct
     8281 atcaatatgg aatatcgggt atccattgcc agataagctc tcctggatgc gctgaatagc
     8341 gctgcggcta cacgcgaata gccagacagc cctataacag cgctggtagc accgaattat
     8401 tgtggcgtaa acgccattcc tttaaatatc cgtagcggat tgccgcgctc aatctgatga
     8461 tggaacagac gcctttcaga cttcaacgcc gcacactcat tttgccgttg ctgttccagc
     8521 cgccaggcaa tcagcagccg ggccagacgc ttattcgcat gttgactgcg ctccgactga
     8581 accttcacgc taatcccgct cgccaggtgc gtggcccgca ctgccgagtc ggttttatta
     8641 acgtgctgcc cacccgggcc ggaagagcgc agagtctcga aacgaatctc atcagactgt
     8701 atgtgctcgt cggcggaaaa gcgcccaatg ccgacgtacc agttttttcg cccatggtgc
     8761 gggcgatacg ggctggtaca aatccacagt aacgtgccgc accaacgttc actgaaagcc
     8821 atggcttttt cgccgtccag cgagaccagc gcagaacgca gcgtgtctgg taatcgtccc
     8881 ggctctgttt caagccgtgt cagcgatacc ttttctctgg cggcttcttt cgtcagacaa
     8941 tccagcgctt tttttaccgc cagacaacac tcgtccggtc cctgcgcaga agaaagttgc
     9001 agtaagatca tgcgcttttc tcccctgagg ttttcagcgt cagcaccgga cgcaggcagg
     9061 caactggcgt aatcagtccg gcgtctgcca gacaatccac aacgctatcg atggatttat
     9121 acgcctgcgg cgcttcttca taaatgagct ggcgatcgcg gcaaatcacc cggctaccca
     9181 tcccagtacg gcagagctgt cgcggggtaa attttgccga taaccggtct ttacactcgg
     9241 tacgcatcca tttgcgcccc gcgccgtgcg ccagggagaa gaggctctcc tcgctgacga
     9301 cgggtttcac cagccagcta taatcgccgc gcgagccggg gataatcacc agtccctgcc
     9361 catctggcgt agcgccttta cggtgcagcc accccgcctc acccgcgaca gtacagggtt
     9421 caacgaagtt atgcgccaca tccagccgcg gttcgccctc agccctgagc tgttgcagta
     9481 tccggcgggc aatcagcgcg cgattactgc gggcaaatgc cagcgcatcg tcatgttctg
     9541 caaggtagtg gcgcgcatcg tcgctatctt ccggcaaacc gttatgcgaa aacgcctcca
     9601 catgacgacg caggatagct tgccccagac cgcgtgaacc actgtgtacc agcagtaata
     9661 actgcgcttt ttgcaacccc gacaaagcga acgaatcagc atcgacgatg cgatcgacct
     9721 gctgcagctc ggcaaaatga ttgccgccgc caatggaacc cagcgcagag cgccacgaat
     9781 gatgctgcat tacggcgggg acattctcct ccagccactg cgcgtccgcc acgtcaggca
     9841 gcgacgccag ccgcttctcc agtttatcgg cgttatattt acgccctaaa atatccgttt
     9901 gccataacgc catgccgcag ccgatatcgt tgccgaccag cgccggataa aaacgtccac
     9961 gcgagaaaaa ggctgcgcca ataggatagc cgcgccccgg atgcagatct ggcatcccga
    10021 taacgcgttt cataccggtt aacttagccg tcgtatataa ttgttggatc gcggaatctt
    10081 cgatccacag gttatccgat gcgatagaaa ataccacatc tgataaagga
//
LOCUS       DAJVSD010000165        10117 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.165, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000165 DAJVSD010000000
VERSION     DAJVSD010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 10117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10117
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.165"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..466
                     /locus_tag="OQP62_003173"
     CDS             <1..466
                     /locus_tag="OQP62_003173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RNA helicase"
                     /protein_id="HCS1722650.1"
                     /translation="LTGAILFLMWEVNKKRPGGKTVNLNQTEPMTKEEGEDHFSVLMN
                     SITPVWYWRVNHEYIDFLHATIKRMTMTELNETPGLFDAQRRCSDLNSAVYKYYDNIK
                     KRCLNGEKVPYSDLDVLNLRQCFREFSLEAYPALVALVWPEYQRPQVKPDEI"
     gene            537..1031
                     /locus_tag="OQP62_003174"
     CDS             537..1031
                     /locus_tag="OQP62_003174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HCS1722651.1"
                     /translation="MERFLENVMYASRWLLAPVYFGLSLALIALALKFFQEILHVLPN
                     VFALAEADLILVLLSLVDMTLVGGLLVMVMFSGYENFVSQLDISAGKEKLNWLGKMDA
                     TSLKNKVAASIVAISSIHLLRVFMDARNVPDNKLMWYVIIHLTFVLSAFVMGYLDRLT
                     RHNH"
     gene            1338..2981
                     /locus_tag="OQP62_003175"
                     /pseudo
     CDS             1338..2981
                     /locus_tag="OQP62_003175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462067.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
     gene            3066..3353
                     /locus_tag="OQP62_003176"
     CDS             3066..3353
                     /locus_tag="OQP62_003176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2623 domain-containing protein"
                     /protein_id="HCS1722652.1"
                     /translation="MNNHFGKGLMAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMF
                     EKTGDRQLSAWEAGILTRRYGLDKEMVMDFFKENHSGMAVRFFMAGYRLEG"
     gene            3543..4661
                     /gene="hybO"
                     /locus_tag="OQP62_003177"
     CDS             3543..4661
                     /gene="hybO"
                     /locus_tag="OQP62_003177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 small subunit"
                     /protein_id="HCS1722653.1"
                     /translation="MTGDNTLITSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVS
                     NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK
                     HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAADGAAAIIAIGSCSAW
                     GGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGTPPKLDAKN
                     RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHRQGWCLYHLGCKGPETWGNCSTLQ
                     FCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLAHVENQTPRSEKPDVNMKEGGNISA
                     GAVGLLGGVVGLVAGVSVMAVRELGRQQKKDNADSRGE"
     gene            4664..5650
                     /gene="hybA"
                     /locus_tag="OQP62_003178"
     CDS             4664..5650
                     /gene="hybA"
                     /locus_tag="OQP62_003178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 operon protein HybA"
                     /protein_id="HCS1722654.1"
                     /translation="MNRRDFIKAASGGALLLGAAPSVSHAAAENRPPIPGSLGMLYDS
                     TLCVGCQACVTKCQDINFPARNPEGEQTWSNNDKLSPYTNNIIQVWRSGTGVNKDQEE
                     NGYAYIKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVP
                     KYDYNNPFGALHKCELCNQKGVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRL
                     ALKPGSEYHYPRQTLKTDDTYLHTVPKYYPHLYGEKEGGGTQVLVLTGVPYEDLDLPK
                     LDDLSTGARSEHVQHTLYKGMILPLAALAGLTVLVRRNSKNDHHDGGDDHES"
     gene            5640..6818
                     /gene="hybB"
                     /locus_tag="OQP62_003179"
     CDS             5640..6818
                     /gene="hybB"
                     /locus_tag="OQP62_003179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase cytochrome b subunit"
                     /protein_id="HCS1722655.1"
                     /translation="MSHDPKPLGGKIISKPVIIFGPLIVLCMLLIVKRLVFGLGSVSD
                     LNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLG
                     GLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWK
                     VSLKRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSVLTAF
                     IMGFSIVIFEGALVQAGLKGNGPDEKNLFVKLTNTISVLLAIFVVLRFGELIYRDKLS
                     YAFAGDFYSAMFWIEVVLMVFPLVVLRVAKLRNDSRMLYLSALSALLGCATWRLTYSL
                     VAFNPGGGYHYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA
                     "
     gene            6815..8518
                     /gene="hybC"
                     /locus_tag="OQP62_003180"
     CDS             6815..8518
                     /gene="hybC"
                     /locus_tag="OQP62_003180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 large subunit"
                     /protein_id="HCS1722656.1"
                     /translation="MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEI
                     VKNRDPRDAWMIVQRICGVCTTTHAISSVRAAESALNIDVPVNAQYIRNIILAAHTTH
                     DHIVHFYQLSALDWVDITSALKADPEKASAMLDGVSSWHLNSAQEFTKVQNKIKDLVA
                     SGQLGIFANGYWGHPAMQLPPEVNLIAVAHYLQALECQRDANRVVALLGGKSPHIQNL
                     AVGGVANPINLDSIGTLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAYYPEWLERG
                     KGAVNYLSAPEFPTDGKNGSFLFPGGYITNADLSTYRPITSHSDEFLIKGIQESAKHA
                     WYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLCKLAAGRE
                     STQTKLNEIIALYQKLTGKTLEMAQLHSTLGRIIGRTVHCCELQNVLQDQYNALIVNI
                     GKGDYTTFVKPNIQATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGP
                     RNFNDDVGPYEQSLVGTPIADPAKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV
                     L"
     gene            8518..9012
                     /locus_tag="OQP62_003181"
     CDS             8518..9012
                     /locus_tag="OQP62_003181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016157468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HCS1722657.1"
                     /translation="MRILVLGVGNILLTDEAIGVRIVEALEQRYTLSDFVEILDGGTA
                     GMELLGDMANRDHLIIADAIVSKKNAPGTIMVLRDDEVPALFTNKISPHQLGLADVLS
                     ALRFTGEFPKKLTLVGVIPQSLEPHIGLTPTVEAMIEPALEQVLAALRESGVEAIPKE
                     TAHV"
     gene            9005..9493
                     /gene="hybE"
                     /locus_tag="OQP62_003182"
     CDS             9005..9493
                     /gene="hybE"
                     /locus_tag="OQP62_003182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase-2 assembly chaperone"
                     /protein_id="HCS1722658.1"
                     /translation="MSETFSGFDTAPVARVQAAFEEIAHRSMHDLSFLHPTMPVHVSD
                     FTLFEGQWTGTVITPWMLSALIFPGPDQIWPGRTVGEKLGLQLPYGTMTFTVGELEGV
                     SQYLACSLMSPLSRSLSPEEGVRLADDCARMLLSLPVSNPDAPQTSRRALLFGRRSCE
                     NA"
     gene            9486..9827
                     /gene="hypA"
                     /locus_tag="OQP62_003183"
     CDS             9486..9827
                     /gene="hypA"
                     /locus_tag="OQP62_003183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HCS1722659.1"
                     /translation="MHELSLCQSAVEIIQQQAEQHGVARVTGVWLEIGALSCVEERAV
                     RFSFDIACQGTLAQGCELHIDYRPAQAWCWDCSQVVEILRHDAQCPHCHGDRLRVDTG
                     DSLKVKSIEVE"
     gene            9855..10103
                     /gene="hybG"
                     /locus_tag="OQP62_003184"
     CDS             9855..10103
                     /gene="hybG"
                     /locus_tag="OQP62_003184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation factor HybG"
                     /protein_id="HCS1722660.1"
                     /translation="MCIGVPGQVLAVGDDIHQLAQVEVCGIKRDVNIALICEGKPADL
                     IGQWVLVHVGFAMSIIDEDEAKATLDALRRMEYDITSA"
BASE COUNT         2303 a         2499 c         2865 g         2450 t
ORIGIN      
        1 actgaccggc gcgatactct tcctgatgtg ggaggttaat aaaaaacgtc ctggtggaaa
       61 aaccgtaaat ttaaatcaaa ctgaacccat gacaaaggaa gagggcgaag atcatttctc
      121 agtattaatg aattcgataa cgccggtatg gtactggcgc gttaaccatg aatatatcga
      181 tttccttcat gcaacgataa aacgaatgac aatgactgag ttgaatgaaa cgcctggatt
      241 atttgacgca cagcgtcgtt gcagcgacct taactctgcc gtttataagt attacgacaa
      301 tataaagaag cgttgtctga acggagaaaa ggtgccgtat tcggatttgg acgtccttaa
      361 tttacgccag tgttttcgtg agttcagtct tgaagcctac ccggcgttgg tcgcgctggt
      421 atggccggaa tatcagcgcc cacaggttaa accggatgag atttaactga catgttgatc
      481 tgatgttgta tggttgagat atactgttgc tggttttagt tacctgacag gtccctatgg
      541 aacgctttct tgaaaatgta atgtatgcgt ctcgctggct gctcgcgccg gtgtattttg
      601 gcctctcttt ggcgctgatc gctttagcgc taaaattttt ccaggaaatt ctacacgttc
      661 tgccgaacgt ttttgccctg gcggaggccg atctgatcct ggtgctgtta tcgctggttg
      721 atatgacgct ggtcggcggg ttgctggtaa tggtcatgtt ctccgggtat gaaaactttg
      781 tctctcagct ggatatctct gcgggcaagg agaagctgaa ctggctgggg aaaatggatg
      841 cgacgtcgct aaaaaataag gtggcggcat cgatagttgc tatctcttcc attcacctgt
      901 tacgcgtgtt tatggatgcg agaaacgtcc cggataacaa attaatgtgg tatgtcatca
      961 tccatctgac ctttgtcctg tcggcgttcg tgatgggcta tctggacaga ttgacgcgac
     1021 ataaccattg agccgccgtc cacggcgggg cagtcgggca aaggacgctg agcccggctg
     1081 taaaacagcg cttctttaac ggtggataac cgtctccctg cagccttacg caatattttt
     1141 actacatcta ttcatttact cagtaataac actgaaagat tttctctgcg ttcacagata
     1201 tataacatct acgggtacgt aaacggcgat aactgtaaaa aaatggagaa tgcattatat
     1261 attctccgcg ccttgccgat aacgagagtg cgtcatcgtc tgatgactaa tctcttatat
     1321 tcagcaagga aattcatatg cgtttgctgc aaaactttac tattcgtatg gtcatgctga
     1381 cgatactggg acttttttgt ctactctggt cgggggtggg tttatacagc gtccatgctt
     1441 tatccgaagt ttcggaagga aatgatattg accggcatct tgtgcggcaa atgacggtgc
     1501 taagccaggg taacgatcaa tatttccgct ttgttacccg ccttagccgc gcgatggatg
     1561 taaaaatcgg cggcggcacg cccgattttg cgcccgcccg gcagtcgctc gagaatatgc
     1621 gtcagaagct ggaggagatg aaagcgctat cgccagggcc gatgaaccct gatatctcaa
     1681 gggcggtgtt gtccaactgg caggccttgc tggagaaagg cgtcattcct caaatgcaac
     1741 tggcgcagca aggatcgctg accgcctgga gcgaacatgc cagtacggtc acgcctgcac
     1801 ttagccgcgc gttcggcgcc agcgcggaac ggtttaatca tgaagctggc gccatgctgg
     1861 ataacacccg tgtgatggtc gatggtaaaa cctataccat ccgcatcctg cttattacgg
     1921 cggtgattct gggcattgcc atcctgattt ttaccgatcg ctatttggtt gcaatgatgg
     1981 tgaaaccgct ggagcgcatc cgtcagcagt ttcagcgtat cgcgcaaggc gatcttagcc
     2041 agccgattga agcgttgggg cgtaactgcg taggccggtt ggtgccgcta ctgcgcgcga
     2101 tgcaggacag tttacgcgaa gccgtcagta cgatccgcgc cggaagcgac aatatctggc
     2161 gcggcgcgac ggaaatttct accggtaata acgatctctc ttcccgaacg gaagaacagg
     2221 ccgtcgcgct ggaagaaact gccgccagca tggaacagct taccgcaacg gtaaaaatga
     2281 acgccgaaca cgctcgccag gcgagtcagc ttgcggatgc cgcctcgcta acggcaggaa
     2341 aaggcggtga actggtttcc gatgtggtag aaacaatgaa cggtatttcc gccagttcgc
     2401 agcagatcgc cgaaattact accgtgatta atagtattgc tttccagacc aatattctgg
     2461 ccttgaacgc agcggtagaa gcggccagag cgggcgagca gggacgcggc ttcgcggtgg
     2521 tcgccggtga ggtacgtaac ctggccagcc gcagcgcggg ggcggcgaaa gaaattgaag
     2581 ctttaattgg cgaatcggca cgtcgcgtag cgcagggcgc gcagttggtc taggagaccg
     2641 gcgcgacgat ggacgccatc ctgcgcggcg tcacggaagt gacgacgatt atgaaacaga
     2701 tcgcgtccgc ctccgaagag cagagtaaag gtatctctca ggttggcgtg gcgatcacgc
     2761 aaatggatag cgttacgcaa caaaacgccg cgctggttga gcaggtttcc gccgcggcgg
     2821 cggcgctgga acggcagacg gaggatttgc aacgctccgt acagcagttc cggctttccg
     2881 ctagtgagcc gcaacaacgc gtaacgacga aagcggcgcc tggcgttcag agaatggcgt
     2941 cggctcccgc acagtctact gatgaatggg ttgccttctg atgtgaagca aaaaagcgcg
     3001 taatgcgctg gccttcattt aaccagttgc tatataattt attatatagc gactaaggag
     3061 gtcagatgaa taatcatttt gggaaagggt taatggccgg gttgcacgcg ccatatgcat
     3121 atagcgcgca tcatgcggtg aatttctgtt ctgagtataa acgtggcttt gtattgggtt
     3181 ttacacaccg tatgttcgaa aagaccggcg atcgtcaact tagcgcgtgg gaggccggaa
     3241 ttctgacgcg tcgctatggt ctggataaag aaatggtgat ggatttcttt aaagagaatc
     3301 attccgggat ggcggttcgc ttctttatgg ctggttatcg actcgaaggt tgatccaaca
     3361 ggggtattat cttgctttaa ttaattacac tatcgcctct tcccttcgtt ttactgttcc
     3421 gtcgaagtat tatggcgcac ataaccataa aaaaagtgtg gtaaatggcg taccgatcgc
     3481 aataacttct tcgcgaacag tgcaaaataa aagctaggtc ttcgtaacgg aataactata
     3541 aaatgactgg agataatact ctcatcactt ctcacggcat taaccgtcgt gatttcatga
     3601 agctttgtgc agcactggcc gctactatgg ggctcagtag caaagccgcc gcagaaatgg
     3661 cagaatcggt atccaatcca cagcgtccgc ccgttatctg gattggcgct caggagtgta
     3721 ccggttgtac cgaatcactg cttcgtgcta cacacccaac cgttgaaaac ctcgttctgg
     3781 agactatctc tctggaatac cacgaggtac tttccgccgc attcggtcac caggtcgaag
     3841 aaaacaaaca taacgctctg gagaagtata aagggcaata tgttctggtg gtggatggtt
     3901 ctatcccact aaaagataac ggtatctact gcatggttgc cggcgagccg atcgtggatc
     3961 acatccgcaa agccgccgac ggcgcagccg cgattatcgc tatcggttcc tgctcggcat
     4021 ggggcggcgt tgctgcggct ggcgtaaacc caaccggcgc tgtcagtctg caggaagtct
     4081 taccgggcaa aacggttatc aatattccag gttgtccgcc aaacccgcat aacttcctgg
     4141 cgaccgtcgc gcatatcatc acttacggca cgccgccgaa gctggatgcg aaaaatcgtc
     4201 caacctttgc ctatggccgt ctgatccatg agcattgcga acgtcgtcca cacttcgacg
     4261 caggccgttt tgccaaagaa tttggcgacg aaggccaccg tcagggctgg tgcctctacc
     4321 atcttggctg taaagggccg gaaacctggg gcaactgttc tacattacag ttctgtgacg
     4381 ttggcggcgt ctggccagtg gcgatcggtc atccttgcta tggctgtaac gaagaaggta
     4441 tcggcttcca taagggcatt caccagcttg ctcatgtcga aaaccaaact ccgcgttcag
     4501 agaaacctga cgtcaatatg aaagaaggcg gcaatatctc tgcgggcgct gtcggtctgc
     4561 ttggcggcgt agtcggtctg gttgccggcg tcagcgtgat ggcggtacgt gaactggggc
     4621 gtcagcaaaa gaaagataac gctgactcac ggggagaata accgtgaaca gacgtgactt
     4681 tattaaagca gcctccggtg gagcattgct gttgggcgcc gcgccgtctg tcagccatgc
     4741 ggctgcagaa aaccgtccgc caattccagg ttcgctgggc atgctgtatg actccactct
     4801 gtgcgtgggc tgtcaggcct gcgtcacaaa gtgtcaggat atcaacttcc cggcgcgtaa
     4861 cccggaaggg gagcagacct ggtcgaacaa cgacaaactg tcgccgtata ccaataacat
     4921 tatccaggta tggcgtagcg gcacgggcgt gaacaaagat caggaagaga acggctatgc
     4981 ctacatcaag aaacagtgta tgcactgcgt cgatcctaac tgcgtttccg tttgtccggt
     5041 gtcggcgctg aaaaaagatc cgaaaaccgg catcgtccac tatgacaaag atgtctgcac
     5101 cggctgccgt tactgtatgg tcgcctgtcc gtacaacgta cctaagtacg actacaacaa
     5161 cccgtttggc gcgcttcaca agtgtgagtt gtgtaaccag aaaggcgttg agcgtctgga
     5221 taaaggcggt ttgcctgggt gtgtggaagt ttgtccggca ggggccgtca ttttcggtac
     5281 tcgtgaagag ctaatggcgg aagcgaaaaa acgtctggcc ctcaaaccag gcagtgaata
     5341 tcactatccg cgccagacgt tgaaaacgga cgacacctat ctgcatacgg tgcctaaata
     5401 ctacccacac ctctacggtg aaaaagaggg cggtggtact caggtgctgg tgctgacagg
     5461 cgttccttat gaagatttgg atctgccgaa gctggatgac ctttcaaccg gagcgcgctc
     5521 cgagcatgtt caacacacgc tttataaagg catgatacta cccctggctg cgctggcggg
     5581 cttaaccgtg ctggttcgtc gtaatagcaa aaacgaccat cacgatggag gagacgatca
     5641 tgagtcatga tccaaaaccg ctgggcggaa aaatcatcag taaaccggtc attatttttg
     5701 gaccgttaat cgtcctgtgt atgctcctta tcgtgaagcg tctggtcttc gggttgggct
     5761 ccgtttccga cctgaacggc ggtttcccgt ggggcgtctg gattgccttt gacctgttga
     5821 tcggcaccgg ctttgcctgc ggcggttggg cgttggcatg ggcggtgtat gtctttaacc
     5881 gtgggcaata ccatccgttg gtgcgcccgg cattgctggc aagcttgttt ggttactcgc
     5941 tgggcggcct gtcgatcact atcgacgtcg gtcgttactg gaacctgccg tacttctaca
     6001 ttccaggtca cttcaacgtg aactcggtac tgtttgagac ggcggtctgt atgaccatct
     6061 acatcggcgt gatggcgctg gagtttgcgc ctgccttgtt tgaacgtctg ggctggaaag
     6121 tgtcgctcaa gcgtctgaat aaggtgatgt tctttattat cgcgctgggc gcgctgctgc
     6181 cgacgatgca ccagtcctca atggggtcat tgatgatctc ggcgggctat aaagtgcatc
     6241 cgctatggca aagctatgaa atgctgccgc tgttctcggt tctgaccgcg tttatcatgg
     6301 gcttctccat tgtcatattt gagggggcgc tggttcaggc aggcctgaaa ggaaacggtc
     6361 cggatgagaa aaatttgttt gttaagctga cgaataccat cagcgtgctg ctggcgattt
     6421 tcgtcgtcct gcgctttggc gaactgattt atcgcgacaa gctgtcctat gcgtttgccg
     6481 gcgattttta ctccgctatg ttctggattg aagtcgtcct gatggtcttc ccgttagtgg
     6541 tgctgcgtgt ggcgaaactg cgtaatgact ctcgtatgct gtacctgtcg gcgctgagcg
     6601 cgctgttggg ttgcgcgacg tggcgtctga cctattcgct ggtggcattc aacccgggtg
     6661 gcggctacca ctacttccca acctgggaag aattgttgat ttctattggt tttgtggcta
     6721 ttgagatttg tgcatacatc gtactcattc gtctactgcc gatacttcct cctttaaaac
     6781 aaaacgatca taatcgtcat gaggcgagca aagcatgagc cagagaatta ctattgatcc
     6841 ggtaacccgt attgagggtc atttacgcat tgactgcgaa attgagaacg gcgtcgtatc
     6901 caaagcatgg gcgtccggca ccatgtggcg cggtatggaa gagatcgtga agaaccgcga
     6961 tccgcgcgat gcgtggatga ttgtgcaacg tatttgcggc gtttgtacga caactcacgc
     7021 gatctcctcc gttcgtgcgg cggaaagcgc gctgaatatt gatgttcccg tcaacgcgca
     7081 gtatatccgt aatattattc tggcggcgca taccacccat gaccacattg tccatttcta
     7141 ccagctctct gcgctggact gggtggacat tacctctgcg ctgaaagccg atccggaaaa
     7201 agcttctgcg atgctggatg gcgtgtcgag ctggcacctg aacagcgcgc aagagttcac
     7261 gaaagttcag aacaagatca aggatcttgt cgctagcggt cagttaggta ttttcgccaa
     7321 tggctactgg gggcacccgg caatgcagtt accgccggag gtcaacctga ttgcggtcgc
     7381 ccactatctg caggcgctgg aatgtcagcg tgacgctaac cgcgtggtgg cgttgctggg
     7441 cggtaaatcg ccgcatatcc agaacctggc ggtcggtggg gtggcgaacc cgatcaatct
     7501 cgacagcatc ggtacgttga accttgaacg cctgatgtac atcaaatcgt ttatcgataa
     7561 gctgagcgat tttgtcgagc aggtgtataa agtggatacc gcagtcatcg cggcctacta
     7621 tccggaatgg ctggagcgcg gcaaaggcgc ggtgaactac ctgagcgcgc cggaattccc
     7681 gaccgacggt aaaaacggca gtttcctgtt cccgggcggt tacattacca atgccgatct
     7741 gtcgacatac cgtccgatca cctctcactc cgatgaattc ctgattaaag gtattcagga
     7801 gagcgcgaag cacgcctggt ataaagatga agcgccgcag gcgccgtggg aaggcaccac
     7861 gattccggct tacgacggtt ggtcggatga cggtaaatac tcatgggtca agtcgccgac
     7921 attctacggc aaaaccgtcg aagtcgggcc gctggcgaac atgctatgta aactggccgc
     7981 aggtcgtgaa tccacgcaga ccaagctcaa tgaaatcatt gcgctttatc agaagctgac
     8041 cggcaaaacg ctggaaatgg cgcaacttca ctctacgctg ggtcgtatca tcgggcgtac
     8101 cgttcactgt tgtgaactgc aaaacgtatt gcaggatcaa tacaacgcgc tgattgtaaa
     8161 tatcggcaaa ggcgattaca ccacgtttgt gaagccgaac attcaggcga cgggcgagtt
     8221 caaaggcgtg ggcttcctgg aggcgccgcg cggtatgctg tctcactgga tggtgattaa
     8281 agacggtatt atcagtaact atcaggcagt ggtgccatcg acctggaact caggtccgcg
     8341 taacttcaac gatgacgtgg ggccgtacga acagtcgctg gtcggtacgc cgatcgccga
     8401 tccggcgaag ccgctggaag tggtacgtac catccactcc ttcgaccctt gcatggcgtg
     8461 cgcggtgcac gtggtggacg ccgatggcaa tgaagtggtc tcggtgaagg ttttgtaatg
     8521 cggatattag tcttaggggt cggcaatatt ttgctgaccg atgaagccat cggggtacgt
     8581 attgttgaag cgttagagca acgatacacc ctgtcggatt tcgttgagat tctggatggc
     8641 ggtacggcgg gaatggaact tcttggcgat atggcgaatc gggatcattt gatcattgcc
     8701 gacgccatcg tgtcgaaaaa gaacgcgccg ggaaccatta tggtactgcg cgacgatgaa
     8761 gttccggcgc tgttcaccaa caaaatctcc ccccatcagc ttggactggc cgacgtattg
     8821 tcggccctcc gctttaccgg cgagtttccg aagaagttga ccctggtcgg cgttattcca
     8881 cagtcgctgg aaccgcacat cggcttaacg ccaaccgtcg aggcgatgat tgaacctgcg
     8941 cttgagcagg ttcttgctgc gctgcgtgaa tccggcgtcg aagcaattcc taaggagacg
     9001 gcgcatgtct gaaacgtttt ccggattcga cacggcgccc gtcgcccggg ttcaggcggc
     9061 gtttgaagag atagcccatc gttcgatgca cgatctttcg tttctgcatc cgactatgcc
     9121 tgtgcatgtc tctgatttta cgttgtttga aggacaatgg acgggcacgg taattacgcc
     9181 gtggatgtta agcgcattaa tcttccctgg cccggaccag atctggcccg ggcgtaccgt
     9241 cggtgaaaaa ctcggtctgc aactgcctta tggcacgatg acctttaccg ttggcgaact
     9301 ggaaggcgtt tcacaatatc ttgcctgctc gttgatgtcg ccgctttccc gtagcctgtc
     9361 gccggaagag ggcgtccggc tggcggatga ctgcgcgcgg atgctgttat ccctgccggt
     9421 aagcaatcct gatgcgccgc agacaagccg gcgtgcgttg ctgtttggcc gtcggagctg
     9481 tgagaatgca tgagctgtct ctttgccaaa gcgccgttga aattattcag cagcaggcag
     9541 aacagcacgg cgtggcgcgc gtcaccggcg tatggctgga gataggcgcg ctttcgtgcg
     9601 ttgaagagcg cgcggttcgt ttcagctttg acatcgcctg ccaggggact ttagcgcaag
     9661 ggtgcgaatt gcacatcgac tacagaccgg cccaggcctg gtgctgggat tgcagtcagg
     9721 tggtggaaat tctcaggcat gacgcgcaat gtccgcattg tcatggcgat cgcctgcggg
     9781 tggataccgg cgattcgttg aaagtaaaaa gtattgaggt cgaataaccc gcattttatt
     9841 tcaggtggtt aattatgtgt attggcgtcc ccggtcaggt gctggccgtc ggagatgata
     9901 ttcaccagct tgcgcaggtg gaagtgtgtg gcatcaaacg tgatgtcaat attgctctga
     9961 tttgtgaagg taagccagcc gatctgatag ggcaatgggt attggtacac gttggttttg
    10021 cgatgagcat cattgacgaa gacgaagcga aagccacgtt agatgcgctg cgccgcatgg
    10081 agtacgacat caccagcgcg tgatccctta atcacct
//
LOCUS       DAJVSD010000166         9925 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.166, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000166 DAJVSD010000000
VERSION     DAJVSD010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9925)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9925)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9925
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.166"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..1303
                     /gene="dcuB"
                     /locus_tag="OQP62_003185"
     CDS             <1..1303
                     /gene="dcuB"
                     /locus_tag="OQP62_003185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuB"
                     /protein_id="HCS1722661.1"
                     /translation="LFYGARKGGIALGLLGGIGLVILVFVFHLQPGKPPVDVMLVIIA
                     VVAASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTILCGTGHVVYTILP
                     IIYDVAIKNNIRPERPMAASSIGAQMGIIASPVSVAVVSLVAMLGNVTFDGKHLEFLD
                     LLSITIPSTLLGILAIGIFSWFRGKDLDKDEAFQKFISVPENRQYVYGDTATLLDKKL
                     PKSNWLAMWIFLAAIAVVALLGADSDLRPTFGGKPLLMVLVIQMFMLLTGALIIILTK
                     TNPASISKNEVFRSGMIAIVAVYGIAWMAETMFGAHMSEIQGVLGEMVKEYPWAYAIV
                     LLLVSKFVNSQAAALAAIVPVALAIGVDPAYIVASAPACYGYYILPTYPSDLAAIQFD
                     RSGTTRIGRFVINHSFILPGLIGVSVSCVFGWIFAAMYGFL"
     gene            1399..3045
                     /locus_tag="OQP62_003186"
     CDS             1399..3045
                     /locus_tag="OQP62_003186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fumarate hydratase"
                     /protein_id="HCS1722662.1"
                     /translation="MSKKEFIYQAPFPMGEDKTEYYLLTSDYVSVSEFNGESILNVEP
                     QALTLLAQQAFHDASFMLRPEHQQQVAAILHDPEASENDKYVALQFLRNSEIAAKGIL
                     PTCQDTGTAIIMGKKGQRVWTGGGDEAALSKGVFNTYIEDNLRYSQNAPLDMYKEVNT
                     GSNLPAQIDLYAVDGDEYKFLCVAKGGGSVNKTYLYQETKALLTPGKLKNFLVEKMRT
                     LGTAACPPYHIAFVIGGTSAESTLKTVKLASTHYYDALPTEGNEHGQAFRDLHLEQEL
                     LEEAQKLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINREGIW
                     IEKLEHNPGQYIPPALRQAGEGDAVKVDLNRPMKEILAQLSQYPVSTRLSLTGTIIVG
                     RDIAHAKLKERIESGEDLPQYIKDHPIYYAGPAKTPAGYPSGSLGPTTAGRMDSYVDL
                     LQSHGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQQSIKHLECVEYPEL
                     GMEAIWKIEVEDFPAFILVDDKGNDFFQQIVSKQCANCAK"
     gene            complement(3143..4573)
                     /gene="melB"
                     /locus_tag="OQP62_003187"
     CDS             complement(3143..4573)
                     /gene="melB"
                     /locus_tag="OQP62_003187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="melibiose:sodium transporter MelB"
                     /protein_id="HCS1722663.1"
                     /translation="MSISLTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLV
                     GTLFLVARIWDAINDPIMGWIVNATRSRWGKFKPWILIGTLTNSLVLFLLFSAHLFEG
                     TAQVVFVCVTYILWGMTYTIMDIPFWSLVPTITLDKREREQLVPFPRFFASLAGFVTA
                     GITLPFVNYVGGADRGFGFQMFTLVLIAFFIASTIVTLRNVHEVYSSDNGVTAGRPHL
                     TLKTIVGLIYKNDQLSCLLGMALAYNIASNIINSFAIYYFTYVIGDADLFPYYLSYAG
                     AANLLTLIVFPRLVKMLSRRILWAGASVMPVLSCAGLFAMALADVHNAALIVAAGIFL
                     NIGTALFWVLQVIMVADTVDYGEFKLNIRCESIAYSVQTMVVKGGSAFAAFFIALVLG
                     LIGYTPNVAQSAQTLQGMQFIMIVLPVLFFMMTLVLYFRYYRLNGDMLRKIQIHLLDK
                     YRKTPPFVEQPDSPAISVVATSDVKA"
     gene            complement(4657..6012)
                     /gene="melA"
                     /locus_tag="OQP62_003188"
     CDS             complement(4657..6012)
                     /gene="melA"
                     /locus_tag="OQP62_003188"
                     /EC_number="3.2.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HCS1722664.1"
                     /translation="MMTAPKITFIGAGSTIFVKNILGDVFHREALKSAHVALMDIDET
                     RLEESHIVVRKLMDSAGASGRITCHTHQKAALQDADFVVVAFQIGGYEPCTVTDFEVC
                     KRHGLEQTIADTLGPGGIMRALRTIPHLWQICEDMTEVCPKATMLNYVNPMAMNTWAM
                     YARYPHIKQVGLCHSVQGTAEELARDLNIDPASLRYRCVGINHMAFYLELERKTADGT
                     YVNLYPELLAAYDAGQAPKPNIHGNERCQNIVRYEMFKKLGYFVTESSEHFAEYTPWF
                     IKPGREDLIARYKVPLDEYPKRCVEQLANWHKELEEYKTAERIDIKPSREYASTIMNA
                     LWTGEPSVIYGNVRNEGLIDNLPQGSCVEVACLVDANGIQPTKVGTIPSHLAAMMQTN
                     INVQTLLTEAILTENRDRVYHAAMMDPHTAAVLGIEEIYALVDDLIAAHGDWLPAWLR
                     R"
     gene            6281..7213
                     /gene="melR"
                     /locus_tag="OQP62_003189"
     CDS             6281..7213
                     /gene="melR"
                     /locus_tag="OQP62_003189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MelR"
                     /protein_id="HCS1722665.1"
                     /translation="MSTQAISLLPPDPHMCNGDEKQTRSPLSLYSEYQRLDVELRPPH
                     RMASSHWHGQVEVNVPFDGDVEYLINNEVVQIKQGHITLFWACTPHQLTRPGNCRQMA
                     IFSLPMHLFLSWPLDRDLINHVTHGMVVKSLATQQLSTFEVLRWQQETSSPNEQIRQL
                     AIDEIGLMLKRFSLSGWQPILLNKTSRTHKNSVSRHAQFYVSQMLGFIADNYDQALTI
                     NDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKTILDVALTAGF
                     RSSSRFYSTFSKFVGMSPQQYRKLSQQRRQTMPG"
     gene            7446..9713
                     /gene="adiA"
                     /locus_tag="OQP62_003190"
     CDS             7446..9713
                     /gene="adiA"
                     /locus_tag="OQP62_003190"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709824.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine decarboxylase"
                     /protein_id="HCS1722666.1"
                     /translation="MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDG
                     YAILSANEAIDCLMFSYQMEQPDEHLSVRQLIGKLHERQQNVPVFLLGDREKATASLD
                     RDLLELVDEFAWILEDTADFIAGRAVAAMTRYRQQLLPPLFNALMKYSDIHEYSWAAP
                     GHQGGVGFTKTPAGRFYHDYYGENLFRSDMGIERTTLGSLLDHTGAFGESEKNAARVF
                     GADRSWSVVVGTSGSNRTIMQACMTDNDVVVLDRNCHKSIEQGLILTGAKPVYMVPSR
                     NRYGIIGPIYPQEMQPETLQKKISASPLTKTKAGQKPSYSVVTNCTYDGVCYNAKEAQ
                     DLLAKTSDRIHFDEAWYGYARFNPIYCDHYAMRGEPGDHNGPTVFATHSTHKLLNALS
                     QASYIHVREGRGAVNFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEV
                     IDEAVDFRQAMARLYKEFTDEGDWFFKPWNKDVVTDPQTGKTYDFADAPAKLLATDQN
                     CWVMRPGETWHGFKDLPDNWSMLDPIKVSILAPGMGDDGELEASGVPAALVTAWLGRH
                     GIVPTRTTDFQIMFLFSMGVTRGKWGTLINTLCSFKHHYDANTPLAQVMPELVQDYPD
                     TYANMGIHDLGDKMFAWLRENNPGARLNAAYSTLPVAEITPRDAYNAIVNNNIEMVAI
                     ENLPGRIAANSVIPYPPGIPMLLSGENFGDENSPQVGYLRSLQSWDHHFPGFEHETEG
                     TEIIDGVYHVMCVKA"
BASE COUNT         2381 a         2745 c         2581 g         2218 t
ORIGIN      
        1 tctgttttat ggtgcccgaa agggcgggat cgcgctcggg ttgttgggcg gtatcggtct
       61 ggtcattctg gtgtttgttt tccatctcca gccaggtaaa ccgcccgttg acgtaatgct
      121 ggtcattatc gcggtagtcg ccgcgtcggc gacgttgcag gcgtcaggcg ggctggatgt
      181 gatgttgcag attgccgaaa agctgctgcg ccgcaacccc aaatacgtct ctattgtggc
      241 gccgttcgtc acctgtaccc tgacgattct gtgtgggaca ggccacgtgg tttacaccat
      301 tttgccgatt atctatgacg tggcgatcaa gaataatatc cgtccggaac gtccaatggc
      361 ggccagttct atcggcgcgc aaatgggtat catcgccagt ccggtttccg tcgccgtggt
      421 ttctctggta gcgatgctgg gcaacgtgac atttgacgga aaacatctgg agttcctcga
      481 tctgctgtcg atcaccatcc cgtctaccct gctcggtatc ctggcaatcg gtatttttag
      541 ttggttccgc ggtaaagatc tggataaaga cgaagcgttt cagaaattta tctccgtacc
      601 ggaaaaccgt cagtacgtgt acggcgatac cgcgacgctg ctggataaaa aactgccgaa
      661 aagcaactgg ctggcgatgt ggatcttcct ggcggcgatt gccgtggtcg ctctcctggg
      721 cgcggactcc gacttacgtc caaccttcgg cggcaaaccg ttgttgatgg tgctggtcat
      781 tcagatgttc atgctgctga ccggggcact cattatcatt ctgaccaaaa ccaatcctgc
      841 gtctatctca aaaaacgaag tttttcgttc cggtatgatt gcgattgtcg cggtatacgg
      901 gatcgcctgg atggcggaaa ccatgttcgg cgcgcatatg tcggaaattc agggcgtgct
      961 gggcgaaatg gtcaaagagt atccgtgggc ctacgccatc gttctgctgc tggtctccaa
     1021 gtttgttaac tcccaagcag cggcgctggc ggcgattgtt cccgtcgcgc tggctatcgg
     1081 tgtcgatccg gcgtatatcg tggcctctgc gccggcatgt tatggctact atatcctgcc
     1141 gacctaccca agcgatctgg cggcgattca gtttgaccgt tccggcacaa cccgtattgg
     1201 tcgcttcgtc attaaccaca gcttcattct gccgggtttg attggcgtga gcgtctcctg
     1261 cgtctttggc tggatctttg ccgcaatgta cggattcctg taatggccgc gcgcgccgcc
     1321 cggctatgcg cggcgcgcga cttagagcct ggcccatgag gctcttaata cattttctta
     1381 ctattaggct ggaagcacat gtcgaaaaaa gagtttatct atcaggcgcc tttcccgatg
     1441 ggagaggaca aaacagagta ttatctgctc acctccgatt atgtcagcgt cagtgaattc
     1501 aatggagaat ctatcctcaa cgttgagccg caggcgttaa cgttgctggc tcagcaggct
     1561 ttccatgatg cgtcttttat gctccgtcct gaacaccagc agcaagtcgc cgccattctc
     1621 catgaccccg aagccagcga aaacgacaaa tatgtggcgt tgcaattcct gagaaactcc
     1681 gagatcgccg ccaaaggcat tctgccgacc tgccaggata ccggcacggc gattatcatg
     1741 ggtaaaaaag gccaacgcgt ctggacgggc ggcggcgatg aagccgcgct ctccaaaggc
     1801 gtgtttaata cctatatcga agataacctg cgctactcgc agaacgcgcc gctggatatg
     1861 tacaaagagg tcaataccgg cagcaacctg ccagcgcaaa tcgatctcta tgccgtcgat
     1921 ggcgacgagt acaagttcct ttgcgtggcg aaaggcggcg gttcagtaaa caaaacgtat
     1981 ctctatcagg agaccaaagc gctgctcacc ccaggcaagc tgaaaaactt cctcgttgag
     2041 aaaatgcgca cgctgggcac cgcggcctgt ccgccatacc atatcgcctt tgtcattggt
     2101 ggcacctcgg cggaaagcac gctgaaaacc gttaaactcg ccagcaccca ctattacgac
     2161 gcgctgccga cggaaggtaa cgagcacggc caggcattcc gcgatctcca cctggaacag
     2221 gaactgctgg aagaagcgca aaaacttggc ctcggcgccc agttcggcgg gaaatatttc
     2281 gcccacgata ttcgcgtaat tcgcctgccg cgtcacggcg cttcctgtcc ggtggggatg
     2341 ggcgtctcct gctcggcaga ccgtaacatc aaagcgaaaa tcaaccgcga aggcatctgg
     2401 atcgaaaaac tggaacacaa tccgggccag tatattccgc cagcgctgcg tcaggcgggc
     2461 gaaggcgacg cggtgaaagt cgatcttaac cgtccgatga aagagatcct cgcccagcta
     2521 tcgcagtacc cggtctcgac tcgcctgtcg ctgacgggca ccattatcgt aggtcgcgat
     2581 atcgcccacg cgaagctaaa agagcgtatt gaatccggcg aagacctgcc gcagtatatt
     2641 aaagaccacc ccatctatta cgcaggtccg gccaaaaccc cggcaggtta tccatctggc
     2701 tcattaggcc ccaccaccgc aggccgaatg gactcttatg tcgatctact gcaatcccac
     2761 ggcggcagta tgatcatgct ggcgaaaggc aaccgtagtc agcaggtcac ggatgcctgt
     2821 aaaaaacacg gcggctttta tttgggcagt atcggcggcc cggcggcggt actggcacag
     2881 cagagcatta agcatctgga gtgcgtcgag tatccggaac tcggcatgga agctatctgg
     2941 aaaattgaag tagaagattt cccggccttt attctggtgg atgacaaagg caacgatttc
     3001 ttccagcaga ttgtcagcaa acagtgcgct aactgcgcga aataacctgg caggcccggc
     3061 gttctcccgg gccgcgttat cggttaattg ccggatggcg ctacgcttat ccggcttatc
     3121 cggcctgcac gagagaccat gctcacgctt ttacatcgct ggtcgctacc acagaaatcg
     3181 ccgggctatc cggctgttcg acgaatggcg gcgttttccg gtatttatcc agcaggtgga
     3241 tctgaatctt gcgcagcata tcgccgttca aacggtagta gcggaagtag agaaccaacg
     3301 tcatcatgaa aaacagtacc ggcaggacaa tcataataaa ctgcatcccc tgcagggttt
     3361 gcgcagactg cgccacgttc ggcgtgtagc caatcagccc cagcaccaga gcgataaaga
     3421 acgccgcaaa cgccgagccg cccttcacaa ccatcgtctg tacggaataa gcgatactct
     3481 cgcagcgaat attgagctta aattccccat aatcgaccgt atccgccacc atgattacct
     3541 gaagcaccca aaagagcgcg gtcccgatat tcaggaaaat acccgccgcc acgattaaag
     3601 cggcattatg gacatccgcc aacgccatcg cgaagagccc tgcgcaactc agaacgggca
     3661 tcacggaggc gcccgcccac aatatccgcc gcgataacat tttcaccagc cgggggaaga
     3721 caatcagcgt cagcagattc gccgcgccgg cgtaagaaag gtaataggga aaaagatcgg
     3781 catcgccaat cacataggtg aagtagtaga tcgcaaagct attgataata ttggaggcga
     3841 tgttatacgc cagcgccatt cccaacaggc aagagagctg atcgtttttg tatatcaatc
     3901 caacgatcgt ttttaacgtc agatgtgggc ggcccgccgt tacaccgttg tcggaggagt
     3961 acacctcatg tacgttgcgt aatgtcacga tagtcgaggc gataaagaac gcaatcagta
     4021 ccagcgtaaa catctgaaag ccgaacccac gatccgcccc gccaacatag ttcacaaacg
     4081 gcagcgttat accggcagtg acgaagccag ccagactggc gaagaaacgc gggaacggca
     4141 ccagttgttc gcgttctcgc ttatcaagcg taatggtcgg caccagcgac caaaatggga
     4201 tatccataat ggtatacgtc atgccccaca ggatgtaggt tacgcagaca aatacaacct
     4261 gcgcggttcc ctcaaaaaga tgggcgctga acagcaggaa aagcaccagc gaattggtta
     4321 aggtgccgat caatatccac ggcttaaatt tcccccaccg cgaacgcgtg gcgttgacaa
     4381 tccagcccat gatgggatcg tttatcgcat cccaaattcg cgcgaccaga aagagggtgc
     4441 cgacgaggcc gaccgagagt cccaccacat cggtgtagta atacatcagg tacatataca
     4501 caatgccgat ggcgaaatcc ttaccaaacg caccgaaccc gtaactcagc tttgttgtca
     4561 gagagatgct catagggtac cgggtcgctg ttaccagcgc ccgccttctg ttagtagagg
     4621 ttaaacgccg gatctgccgt ccagcgcggc tggagattaa cggcgtaacc aggccggaag
     4681 ccagtcgcca tgcgcggcga tcagatcgtc aaccaacgca tagatttctt cgatacccag
     4741 caccgccgcg gtatgagggt ccatcatcgc cgcgtgatac acgcgatcgc ggttttccgt
     4801 gaggatggct tcggtcaaca gcgtttgcac gttgatgttg gtctgcatca ttgccgccag
     4861 atgggaaggg atcgtcccca ccttcgtcgg ttgaatgccg ttggcatcta ccagacaagc
     4921 cacctcgacg cagcttccct gcggcaggtt atcaatcagt ccctcattac gcacattgcc
     4981 gtaaatcacg ctcggctcgc cggtccacag agcgttcata atggtgctgg cgtactcgcg
     5041 ggacggtttg atgtcgatac gctcggcggt tttatactcc tccagctctt tatgccagtt
     5101 cgccagttgt tctacgcagc gtttcggata ttcatccagc ggcaccttgt agcgcgcaat
     5161 cagatcctcg cgtcccggtt taataaacca cggcgtgtac tcggcaaaat gctctgatga
     5221 ctccgtgacg aagtagccca actttttgaa catctcatag cgcacgatgt tctggcagcg
     5281 ttcattgccg tgaatattgg gcttcggcgc ctgtccggcg tcataagccg ccagcaattc
     5341 aggatagaga ttgacataag tcccgtcagc cgttttgcgc tccagttcca ggtaaaacgc
     5401 catgtggtta atgccgacgc agcggtagcg cagcgaggcg ggatcgatat tcaagtcgcg
     5461 cgccagttct tccgccgttc cctgtaccga atggcacagg ccgacctgtt tgatatgcgg
     5521 atagcgggca tacatcgccc aggtattcat cgccatcggg ttgacgtaat tgagcatggt
     5581 ggccttcgga cagacttccg tcatgtcttc gcaaatctgc cacagatgcg ggatggttcg
     5641 cagcgcgcgc atgatgccgc ccggccccag cgtatcggcg atcgtctgtt ccaggccatg
     5701 acgcttacaa acctcaaaat cggtcacggt gcagggttca tagccgccaa tctgaaaggc
     5761 gaccaccacg aaatccgcat cctgtagcgc cgctttctgg tgggtatggc aggtaatccg
     5821 gccagaagcg cccgctgagt ccatcagttt ccgtaccaca atgtgcgact cttccagccg
     5881 ggtttcgtca atatccatca gggcgacatg cgctgacttt agcgcctcgc ggtgaaacac
     5941 atcgccgagg atatttttga cgaaaatcgt agaacctgcg ccgataaagg taattttggg
     6001 tgccgtcatc atgactctcc agaacagtag tgaacacctt catggtggca cgcgttcccg
     6061 gtgaaaacct ccgtcttccc cgatgagcat tcccgaaaac tcagatcgta tgctggcgcg
     6121 cgggagatct gagtttttgg gacaaaatgg cgtaaaaagc agagtattcg gcctgatagt
     6181 caggctacgc tctacaatat cgacggattc tgtgtccgga ttcccggttt cctcccggct
     6241 aaaggggcat aattctgata attcaggaaa tggagtgacg atgagtacgc aagcaatatc
     6301 cctcctcccg cccgacccgc acatgtgcaa cggcgatgaa aagcaaaccc gtagcccgct
     6361 gtcgctctat tccgaatatc aacgactgga cgttgagctg aggccgccgc acagaatggc
     6421 cagcagtcac tggcatgggc aagtagaagt gaatgttccg tttgacggcg atgtggagta
     6481 tttaatcaac aatgaagtcg tgcagataaa gcagggacat atcaccctgt tttgggcctg
     6541 tacgccacac cagcttaccc gccccggcaa ctgccgccag atggcgattt tcagtttgcc
     6601 gatgcacctg tttctctcct ggccgctgga tcgcgatctt atcaaccatg tcacgcacgg
     6661 gatggtggtt aaatcactgg cgacccagca gcttagcacc tttgaagtgt tgcgctggca
     6721 gcaggaaaca agcagcccga atgagcaaat tcgccagttg gcgatcgatg aaatcggctt
     6781 gatgcttaaa cgctttagcc tttccggctg gcaacccatt ttgctcaata aaacatcacg
     6841 cacccacaag aatagcgtct cacgccatgc gcagttttac gtaagccaga tgctgggatt
     6901 tattgccgat aactacgatc aggcgctaac cattaacgac gttgcggagc atgtcaaact
     6961 caatgctaac tacgcgatgg gaatattcca gcgggttatg caattgacga tgaagcagta
     7021 catcacggcg atgcgcatca atcacgtacg tgccttattg agcgatactg acaaaacgat
     7081 cctcgatgtc gctctgactg ccgggttccg atccagcagc cgtttttaca gtacttttag
     7141 caaatttgtc ggtatgtcgc cgcaacaata ccgcaagcta agccagcaac gacgccagac
     7201 gatgcccggc taaagccgga taccactatc agccaaaaaa ataattcacc tgtcgataaa
     7261 cggcgggtga aattgctcgc tatcaataat taacccattg tttattaaac aataatatca
     7321 ataactgacc attattccat cactttacac cccctatttg acggggtaat acttgcccac
     7381 gtcacattca tacggcgggt cggcaaggcg taaattgcac ggcctccaca accgggtaaa
     7441 agatgatgaa agtattaatt gttgaaagtg agtttctgca tcaggacacc tgggttggca
     7501 acgcggttga gcgtctggcg gatgccttga gccaacaaaa tgttaccgtc attaaatcga
     7561 catccttcga tgacggctat gccatcttgt ccgcgaacga agccattgac tgtctgatgt
     7621 ttagctacca aatggaacaa ccggatgagc acctgagcgt caggcaattg atcggtaagc
     7681 ttcacgagcg tcagcaaaac gtgcccgttt tcctgttagg cgacagggaa aaagcgacgg
     7741 catcgctgga ccgcgacctg ctggagcttg tcgatgaatt cgcctggatt ctggaagaca
     7801 ccgctgactt tatcgccgga cgcgccgttg ccgccatgac ccggtatcgc cagcaactgt
     7861 taccgccgct gtttaacgcg ttgatgaaat acagcgacat tcatgaatat tcatgggcgg
     7921 cgccgggaca tcagggcggc gtcggtttca ctaaaacgcc tgccggtcgc ttttatcacg
     7981 attattatgg cgaaaacctg ttccgcagcg atatggggat tgagcgtacc acgctcggtt
     8041 cactcctcga ccataccggc gcgtttggcg aaagcgagaa aaacgccgcc cgcgtattcg
     8101 gtgctgaccg ctcctggtcc gtggttgtcg ggacctcagg ttctaaccgt actattatgc
     8161 aggcctgtat gacggataat gatgtcgttg tactggatcg taactgccat aaatccatcg
     8221 aacaggggct gatcctcact ggggccaaac cggtatatat ggtgccaagc cgtaaccgtt
     8281 acggcattat cgggccaatc tacccgcagg aaatgcagcc tgaaaccttg cagaaaaaaa
     8341 tcagcgccag cccgctgacc aaaaccaaag ccggacagaa accgtcttac agcgtggtga
     8401 ccaactgtac ctatgacggc gtatgctata acgccaaaga ggcgcaggat ctgctggcaa
     8461 aaaccagcga tcgcattcac ttcgacgaag catggtacgg ctatgcgcgc ttcaacccga
     8521 tttattgcga tcactacgcg atgcgcggcg agccaggcga ccataacggt ccgaccgtgt
     8581 ttgccaccca ctccacgcac aaattactga acgcgctttc acaagcttcc tacattcacg
     8641 tccgtgaagg ccgtggcgcg gtgaatttct cccgcttcaa ccaggcctat atgatgcatg
     8701 ccaccacctc tccgttatat gccatctgcg catccaacga tgtggcggta tcgatgatgg
     8761 acggtaacag cggcctgtcc ctgactcaag aggtgattga cgaagcggtt gatttccgtc
     8821 aggcgatggc gcgtctttat aaagagttta ccgatgaagg cgactggttc tttaaaccgt
     8881 ggaataaaga cgtcgtcacc gatccacaaa ccggtaaaac gtatgacttc gccgacgcgc
     8941 cggcaaaact gctggcaacc gaccagaact gctgggtcat gcgccccggg gaaacctggc
     9001 acggctttaa agacctgccg gataactgga gtatgctgga cccgattaaa gtcagtatcc
     9061 tggcgccggg tatgggcgac gatggcgaac tggaagcatc cggcgtacct gctgcgctgg
     9121 tcacagcatg gcttggccgc cacggtatcg tgccgacccg caccaccgac ttccagatta
     9181 tgttcctgtt ctccatgggg gtaactcgcg ggaaatgggg aacgctgatc aacacgctgt
     9241 gctccttcaa acatcattac gacgcgaata cgccgctggc gcaggtgatg ccggaactgg
     9301 tgcaggatta tcctgacact tacgcgaaca tgggtattca tgacctgggc gataaaatgt
     9361 ttgcctggct acgtgaaaat aacccgggcg cccgtctcaa tgccgcctat tccaccctgc
     9421 cggttgcgga gattaccccg cgcgacgcct acaacgcgat cgtgaacaac aatattgaaa
     9481 tggtggcgat tgaaaatcta ccgggtcgca ttgcggcgaa ctccgttatt ccttacccgc
     9541 caggcatccc gatgctgctc tccggtgaaa actttggcga tgaaaacagt ccgcaggtgg
     9601 gttacttacg ctcactgcaa tcctgggatc atcacttccc tggctttgag catgaaaccg
     9661 aaggcacgga aattattgat ggcgtatatc acgttatgtg cgtgaaagcc taatcacaaa
     9721 gagtcttttt ttgaggatgg catgtattcc ctgagtattg ctgcaaaaca ataatactgt
     9781 catacctttt tgcgcgggcc ccatcccgcg ctttttttat acaaaaatga caagtttcca
     9841 ctcgcgtaca actttttgta caccctaatt catcgtacaa atattgtaat attattcagg
     9901 aaagctattt taatgcagtt tcaat
//
LOCUS       DAJVSD010000167         9878 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.167, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000167 DAJVSD010000000
VERSION     DAJVSD010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9878)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9878)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9878
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.167"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            7..927
                     /gene="rbsK"
                     /locus_tag="OQP62_003191"
     CDS             7..927
                     /gene="rbsK"
                     /locus_tag="OQP62_003191"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HCS1722667.1"
                     /translation="MDIAVIGSNMVDLITYTNQMPKEGETLEAPAFKIGCGGKGANQA
                     VAAAKLNSKVLMLTKVGDDIFADNTIRNLESWGINTTYVEKVPCTSSGVAPIFVNANS
                     SNSILIIKGANKFLSPEDIDRAAEDLKKCQLIVLQLEVQLETVYHAIEFGKKHGIEVL
                     LNPAPALRELDMSYACKCDFFVPNETELEILTGMPVDTYDHIRAAARSLVDKGLNNII
                     VTMGEKGALWMTRDQEVHVPAFRVNAVDTSGAGDAFIGCFAHYYVQSGDVEAAMKKAV
                     LFAAFSVTGKGTQSSYPSIEQFNEYLSLNE"
     gene            958..2274
                     /gene="fucP"
                     /locus_tag="OQP62_003192"
     CDS             958..2274
                     /gene="fucP"
                     /locus_tag="OQP62_003192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HCS1722668.1"
                     /translation="MNDKNIVQMPDGYLNKTPLFQFILLSCLFPLWGCAAALNDILIT
                     QFKSVFSLSNFASALVQSAFYGGYFLIAIPASLVIKKTSYKVAILIGLTLYIVGCTLF
                     FPASHMATYTMFLAAIFAIAIGLSFLETAANTYSSMIGPKAYATLRLNISQTFYPIGA
                     AAGILLGKYLVFSEGESLEKQMAGMNAEQVHNFKVLMLENTLEPYKYMIMVLVVVMVL
                     FLLTRFPTCKVAQTASHKRPSALDTLRYLASNARFRRGIVAQFLYVGMQVAVWSFTIR
                     LALELGDINERDASTFMVYSFACFFIGKFIANILMTRFNPEKVLILYSVIGALFLAYV
                     ALAPSFSAVYVAVLVSVLFGPCWATIYAGTLDTVDNEHTEMAGAVIVMAIVGAAVVPA
                     IQGYVADMFHSLQLSFLVSMLCFVYVGVYFWRESKVRGNLAEVAAS"
     gene            2286..3299
                     /locus_tag="OQP62_003193"
     CDS             2286..3299
                     /locus_tag="OQP62_003193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
                     /protein_id="HCS1722669.1"
                     /translation="MTTRITLWRELFSEQPRILLENDDFTVTAFRYASGVEGLKIQNS
                     RGHLVILPWMGQMIWDVQFDGHDLTMRNMFRQPKPAAEVVATYGCFAFHSGLLANGCP
                     SPEDTHPLHGEMPCAAMDDAWLELEGDSLRVTGRYEYVMGFGHHYQAQPAVVMRKSSA
                     LFDIQMTVTNLASVAMPLQYMCHMNYAYVPNATFRQNIPDTALKLRESVPAHVKPTAQ
                     WLAFNQRLLQGEASLATLNEPGFYDPEIVFFADELDKYTDTPEFSMIAPDGTTFVTRF
                     ASAELNYVTRWILYNGDQQVAAFALPATCRPEGFLAAQRNGTLLQLEPQQTRTFTVTT
                     GIV"
     gene            3453..4043
                     /gene="uhpA"
                     /locus_tag="OQP62_003194"
     CDS             3453..4043
                     /gene="uhpA"
                     /locus_tag="OQP62_003194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator UhpA"
                     /protein_id="HCS1722670.1"
                     /translation="MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP
                     GRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKR
                     CSPDELIAAVHTVATGGCYLTPDIAVKLAAGRQDPLTKRERQVEEKLAQGMAVKEIAA
                     ELGLSPKMVHVHRANLLEKLGVSNDVELAHRMFDGW"
     gene            4043..5545
                     /gene="uhpB"
                     /locus_tag="OQP62_003195"
     CDS             4043..5545
                     /gene="uhpB"
                     /locus_tag="OQP62_003195"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction histidine-protein
                     kinase/phosphatase UhpB"
                     /protein_id="HCS1722671.1"
                     /translation="MNTFFSRLITVVACFFIFSAAWFCLWSISLHLVERPELAALLFP
                     FGLRLGLMLQCPRGYWPVLLGAEWLLVYWLAQEVALAHLPLLMIGGVLTLLPVALTSR
                     YRHQRDWRTLLLQGAALTAAALLQSLPWLGQGEAAWNALLLTLTGGLTLAPICLVFWH
                     YLTSTTWLPLGPSLVSQPVNWRGRHLIWYLLLFIVSLWLQLGLPAELSRFTPFCLALP
                     IIALAWHYGWQGALIATLMNAIALIASQTWHDHPVDLLLSLLAQSLTGLLLGAGIQRL
                     RELNQSLQKELARNHRLAERLLETEESVRRDVARELHDDIGQTITAIRTLAGIVQRLA
                     ADNGGVKQSGQLIEQLSLGVYDAVRRLLGRLRPRQLDDLTLAQAIRSLLREMELESRG
                     IVSHLDWRIDETALSESQRVTLFRVCQEGLNNIVKHANASAVTLQGWQQDERLMLVIE
                     DDGSGLPPGSHQQGFGLTGMRERVSALGGTLTISCTHGTRVSVSLPQRYV"
     gene            5555..6883
                     /locus_tag="OQP62_003196"
     CDS             5555..6883
                     /locus_tag="OQP62_003196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1722672.1"
                     /translation="MLSFLKAPANAPLITDKHEVDARYRYWRRYILITIWLGYALFYF
                     TRKSFNAAAPEILASGILTRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL
                     IATGVVNILFGFSTSLWAFALLWALNAFFQGFGSPVCARLLTAWYSRTERGGWWALWN
                     TAHNVGGALIPLVMAAVALHYGWRVGMMVAGLLAIGVGMVLCWRLRDRPQAIGLPPVG
                     DWRHDALEVAQQQEGAGLSRKEILAKYVLSNPYIWLLSLCYVLVYVVRAAINDWGNLY
                     MSETLGVDLVTANTAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVG
                     SLWLMPFASYVMQAACFFTTGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLG
                     ASLSGWPLAKVLEIWHWTGFFAVIAIAAGISALLLLPFLNAQAPRETHEA"
     gene            7026..8417
                     /gene="uhpT"
                     /locus_tag="OQP62_003197"
     CDS             7026..8417
                     /gene="uhpT"
                     /locus_tag="OQP62_003197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexose-6-phosphate:phosphate antiporter"
                     /protein_id="HCS1722673.1"
                     /translation="MLAFLNQVRKPTLDLPLNVRRKMWFKSFMQSYLVVFIGYLTMYL
                     IRKNFNIAQNDMISTYRLSMTELGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFML
                     ILSAICMLGFSASMGAGSTSLFLMIAFYALSGFFQSTGGSCSYSTITKWTPRRKRGTF
                     LGFWNISHNLGGAGAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRFGSDSPE
                     SYGLGKAEELFGEEISEEDKETEENEMTKWQIFVEYVLKNKVIWLLCFSNIFLYVVRI
                     GIDQWSTVYAFQELKLSKEVAIQGFTLFEVGALVGTLLWGWLSDLANGRRALVACVAL
                     ALIIATLGVYQHASNQYVYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGAADGIKG
                     TFDYLIGDSFAKLGLGMIADGTPVFGLTGWAGTFAALDAAAIGCICLMAMVAVMEERK
                     IRREKKIQQVNIA"
     gene            8610..9062
                     /locus_tag="OQP62_003198"
     CDS             8610..9062
                     /locus_tag="OQP62_003198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1198 domain-containing protein"
                     /protein_id="HCS1722674.1"
                     /translation="MIWLILATFVVVFIVGFRVLTSDTRRAIRRLSERLNIDVVPIES
                     MIDQMGKTAGGEFLQYLHRPDESHLQNAAQVLLIWQMVIVDGGDQNLQRWHRLLQKAR
                     LAAPITDTQVRLALGFLREMEPDMQEINAFQLRYNAFFQPEEGVHWLH"
     gene            9415..>9878
                     /locus_tag="OQP62_003199"
     CDS             9415..>9878
                     /locus_tag="OQP62_003199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1722675.1"
                     /translation="MKTLSKSSHIPLYQQVVEWIRESIYSGELVEDDRIPSEFQIMDM
                     LEVSRGTVKKAVDQLVREGVLVQVQGKGTFVKKENVAYPLGEGLLSFAEALASQKINF
                     TTSVITSRLEPANRFVAEKLSIKPGQDVLFLKRLRCIGDEKVMLIENRINIDL"
BASE COUNT         2041 a         2564 c         2838 g         2435 t
ORIGIN      
        1 agtaaaatgg atatcgcggt tattggctct aacatggtgg accttatcac ctacaccaac
       61 cagatgccca aagaagggga aactctggaa gcgccggcgt ttaaaatcgg ctgcggcgga
      121 aaaggggcga accaggccgt ggcggccgct aagctcaatt caaaagtatt gatgttgacc
      181 aaagtgggcg acgatatttt tgccgacaac accattcgta atctcgaatc ctgggggatc
      241 aatacgacgt atgtagaaaa agtaccgtgt accagcagcg gcgtagcgcc gattttcgtc
      301 aacgccaact ccagcaacag cattctgatc atcaaaggcg ctaacaagtt tctctcgccg
      361 gaagatatcg atcgcgcggc ggaagattta aaaaaatgcc agcttattgt tctgcaactg
      421 gaagttcagc ttgaaacggt ttatcacgca atagaatttg gcaagaaaca cgggattgaa
      481 gtgttattaa accctgcgcc agcattacgg gaattagata tgtcttatgc ctgtaaatgc
      541 gatttctttg tacctaatga aaccgagctg gaaatattaa ccggtatgcc agtggatacc
      601 tatgaccata ttcgcgcagc ggcacgttcg ctggtagata aagggctgaa caatattatt
      661 gtcaccatgg gcgagaaagg cgcgctgtgg atgacgcgtg accaggaagt ccatgttccg
      721 gcgtttagag tgaacgctgt tgataccagc ggcgcgggcg atgcctttat cggctgtttc
      781 gcgcattact acgtccagag cggggatgtg gaagccgcca tgaaaaaagc cgtcctcttt
      841 gccgctttca gcgtcaccgg gaaaggcacc caatcctctt atccaagcat tgagcaattt
      901 aatgagtatc tttcgttgaa cgaataacaa tcaccctgca ctgttaaagg tagcactatg
      961 aacgataaaa acatcgttca gatgcccgac gggtatctga ataagacacc tctgttccag
     1021 tttattttgt tatcctgttt attcccgtta tggggatgcg cagccgcgtt aaatgatatt
     1081 ctgattacgc aatttaaaag tgtattttcg ctgagcaact ttgcttcggc attagtacaa
     1141 agcgcctttt atggcggtta ttttttaatt gctattccgg cctcgctggt cattaaaaaa
     1201 accagttata aagtggcgat acttatcggc ctgacgctat acattgtcgg ctgtacgctc
     1261 ttttttccgg cgtcgcacat ggcgacctac accatgttcc tcgcggcgat tttcgccatt
     1321 gcgattggcc tgagtttcct ggaaacggcg gcgaatacct acagttcgat gatcgggccg
     1381 aaagcctacg ccacgctgcg gctgaatatc agccagacct tttatccgat cggcgcggcg
     1441 gcaggcattt tattgggtaa gtatctggtc ttttccgaag gggaaagcct ggaaaaacag
     1501 atggcgggca tgaatgccga gcaagtccac aacttcaagg tgttgatgct ggaaaacact
     1561 ctggaaccct ataagtacat gattatggtt ctggtagtgg tgatggtact gttcctgctg
     1621 acgcgttttc cgacctgtaa agttgcgcaa accgcgagtc ataaacgtcc ctcggcgctg
     1681 gatacgctac gctatctcgc cagtaacgcc cgcttccgtc gcggtattgt ggcgcagttc
     1741 ctgtatgtgg gaatgcaggt ggcggtctgg tcgttcacta ttcgtctggc gctggagtta
     1801 ggcgatatca atgagcgcga tgcctcaacc tttatggtct acagcttcgc ctgctttttt
     1861 atcggcaagt ttatcgccaa cattctgatg acgcgcttca acccggaaaa agtcctgatc
     1921 ctttactctg tgatcggcgc gctgttcctg gcctatgtgg cgctggcgcc cagctttagc
     1981 gcggtatacg tggcggtgct ggtcagtgtt ctgtttggcc cctgctgggc gaccatttat
     2041 gccggaacgc tcgataccgt cgataacgag cataccgaaa tggcgggggc ggtcatcgtg
     2101 atggcgattg tcggcgcggc ggtggttccc gcgattcagg gctacgtggc ggacatgttc
     2161 cactcgttac agctctcatt cctggtttcc atgctgtgct ttgtttacgt tggcgtttac
     2221 ttctggcgcg aaagcaaagt gcgcggcaac ctggctgaag tcgccgcgtc ctgaggagat
     2281 caaccatgac aacacgtatt acattatggc gggagctttt tagcgagcag ccgcgtatct
     2341 tgctggaaaa tgacgatttt acggttacgg cgtttcgtta cgccagcggc gtggaaggac
     2401 tgaaaataca aaacagccgc ggtcatctgg tgattctgcc ctggatgggg cagatgattt
     2461 gggacgtgca gtttgacggt catgatctga ctatgcgcaa catgttccgc cagccgaagc
     2521 cggctgcgga agtggtggca acgtatggtt gctttgcttt ccattccgga ctattggcga
     2581 atggctgccc gtcgccggaa gatacacatc cgctgcacgg cgagatgccc tgcgctgcta
     2641 tggacgacgc ctggctggag ttagagggcg acagtctgcg cgtgaccggg cgctacgagt
     2701 atgtgatggg gttcggtcat cattatcagg cgcaacctgc ggtggtaatg cgtaaatcaa
     2761 gcgcgctgtt tgatattcag atgaccgtga ctaacctggc ttcagtcgcc atgccgctac
     2821 agtacatgtg ccacatgaac tatgcctatg tgccgaacgc cacgttccgc cagaatatcc
     2881 cggataccgc gctgaagcta cgcgagtcgg tgccagcgca tgtcaaaccc acggcgcagt
     2941 ggctggcgtt taatcaacga cttttgcagg gtgaagcctc gctggcaacg ctcaacgagc
     3001 ctggctttta cgacccggaa atcgtgttct tcgccgatga actggacaag tacacggata
     3061 ccccggaatt cagtatgatc gccccggatg gcaccacgtt cgtgacacgt ttcgccagcg
     3121 cggagctgaa ttacgtgacc cgctggattc tttataacgg cgatcagcag gttgccgcct
     3181 ttgccctgcc cgcgacctgt cggcctgaag gttttctcgc ggcgcagcga aatggaacct
     3241 tgcttcaact ggaaccgcag caaacccgga cgttcaccgt cacgacaggc attgtctgac
     3301 cgctcaaggc ttgaacaccc aggcacttat cgttaaggta agtgcttttg ccggatggcg
     3361 gcattaatgc cttatccggc ctacaacggc acctgcccgt aggcctgata agcgcagcgc
     3421 catcaggcat gtcttagcgc caggatgaac ccatgattac cgttgccctt atcgacgacc
     3481 accttatcgt ccgctccggc tttgcacagc tactggggct ggaacccgat ttgcaggtgg
     3541 tcgccgagtt tggttccggg cgcgaagcgt tggcaggctt gccggggcgc ggcgtacagg
     3601 tgtgtatctg cgatatctcg atgccggata tttccggact ggagctgcta agccaactgc
     3661 caaaagggat ggcgacgatc atgctctcgg ttcacgatag cccggcgctg gtggaacagg
     3721 cgttgaacgc cggcgcgcgc ggttttctct ctaaacgctg tagtccggat gagctgatcg
     3781 ccgcggtgca tacggtggcg acgggcggct gctatttgac ccccgatatt gccgtgaaac
     3841 tggcggcggg tcggcaagat ccgctgacca aacgcgagcg tcaggtggag gaaaaactcg
     3901 cccagggtat ggcggtaaaa gagattgccg ccgagctggg gctgtcgcca aaaatggtgc
     3961 atgtccatcg cgcgaatctg ctggaaaaat taggcgtcag caatgacgtt gaactggcgc
     4021 atcgcatgtt tgacggttgg taatgaacac ctttttttcc cgtttaatca ccgttgttgc
     4081 ctgctttttt atcttctccg ccgcgtggtt ctgcctgtgg agcatcagcc tgcatctggt
     4141 agagcgcccg gagctggcgg cgctactctt tcccttcggc ctgcgcctgg gacttatgct
     4201 gcaatgcccg cgcggatact ggccagtatt gctgggcgcg gagtggctgc tggtgtactg
     4261 gttggcgcag gaagttgcgc tggcccatct gccgcttttg atgatcggtg gtgtgttgac
     4321 gctactgccc gtggcgctga cttctcgtta ccgccatcag cgcgactggc gcacgttatt
     4381 gcttcagggc gcggccctca ccgccgcggc gctactgcaa tccctgccct ggctggggca
     4441 gggggaagcg gcatggaacg cgctactgct gaccctcacg gggggactga cgctggcccc
     4501 catctgcctg gttttctggc actatctcac cagcactacc tggctgccgc tgggaccatc
     4561 gctggtatcg cagccggtaa actggcgcgg gcggcatctg atctggtatc tgctgctgtt
     4621 tatcgtcagt ctgtggctgc aactggggtt acctgctgaa ctttcgcgct tcacgccgtt
     4681 ctgcctggcg ttgccgatta tcgcgctcgc ctggcattat ggctggcagg gcgcgctcat
     4741 tgccacactg atgaacgcta tcgcgctgat cgccagccag acctggcacg atcatcccgt
     4801 cgatttatta ctttcgctgt tggcgcaaag cctgaccggg ctactgcttg gcgcgggcat
     4861 tcagcgcctg cgcgagctga accagtcgct gcaaaaggag ctggcgcgca accatcggct
     4921 ggcggagcgt cttctggaga ccgaagagag cgtacggcgc gatgttgcgc gtgagctgca
     4981 cgatgacatc ggacagacca tcaccgcgat tcgaaccctg gcgggcattg tgcaacgact
     5041 ggcggcggat aacggcggcg tgaagcagag cgggcaactt atcgagcagc tttcgctggg
     5101 cgtgtatgac gccgtgcgtc gcctgctggg gcgcttgcgc ccgcgccagc tagacgactt
     5161 aacgctggcg caggccatcc gttcgctgct gcgcgaaatg gagctggaaa gccgcggtat
     5221 tgtcagtcac ctcgactggc gaattgacga aacggcgcta agtgaaagtc agcgcgtgac
     5281 gctgtttcgc gtctgtcagg aagggctgaa taacatcgta aaacatgcca atgccagcgc
     5341 ggtgacgctc cagggctggc agcaggatga gcggctgatg ctggtgattg aggatgacgg
     5401 cagcggcctg ccgccgggct ctcaccagca gggcttcggc ctgaccggaa tgcgcgaacg
     5461 cgtgtcggcg ctcggcggga cgctaaccat ctcttgtacc cacggtacgc gggtgagcgt
     5521 ctcgttgccc cagcgttacg tttaaggaag gataatgctt tcgtttttaa aagccccggc
     5581 caacgcgccg ctcatcaccg ataagcacga ggttgacgcc cgctatcgct actggcggcg
     5641 gtatatcctg atcaccattt ggttgggtta cgcgctgttc tatttcaccc gtaaaagctt
     5701 taacgccgcc gcgccggaaa tccttgccag cggtattctg acccgcagcg atatcggcct
     5761 gctggcgacg ctgttttaca tcacctacgg ggtgtcgaaa tttgtctccg gcatcgttag
     5821 cgatcgctct aacgctcgct attttatggg catcgggctg attgcgaccg gcgtagtgaa
     5881 tattctgttc ggcttctcga cctcgctgtg ggcctttgcg ctgctatggg cgctgaacgc
     5941 ctttttccag gggtttggat cgccggtttg cgcccgtttg ctgactgcct ggtactcgcg
     6001 taccgagcgc ggcggctggt gggcgttatg gaacaccgcg cataatgtcg gcggggcgct
     6061 gatccctctc gttatggccg ctgtcgccct gcattatggc tggcgcgtcg ggatgatggt
     6121 ggccggattg cttgccatcg gggtgggcat ggtcctctgc tggcggctgc gcgaccgtcc
     6181 gcaggcgatt ggtttaccgc cggtaggcga ctggcggcac gatgcgctgg aggtcgccca
     6241 acagcaagag ggcgcgggac taagccgcaa agaaatcctc gctaaatatg tgctgtcgaa
     6301 tccctatatc tggctgcttt cgttgtgtta tgtcttagtg tacgtggtgc gcgcggcgat
     6361 caacgactgg ggcaacctgt atatgtccga gacgctgggc gtggatttgg tcacggccaa
     6421 cacggcagta tcgatgtttg agttgggtgg atttatcggc gcgctggtgg cgggttgggg
     6481 ctcggacaaa ctcttcaacg gcaaccgcgg accgatgaat ttaatcttcg ctgccgggat
     6541 tttgctctct gtgggttcgc tgtggctgat gccgttcgcc agctacgtca tgcaggcggc
     6601 ctgtttcttc accaccggtt tctttgtctt cggcccgcag atgctcattg gcatggcggc
     6661 ggcggagtgc tcgcataaag aggcggcggg cgcagccacc ggctttgtcg gcctgttcgc
     6721 ctatctcggc gcgtcgcttt ccggctggcc gttagcgaaa gtgctggaga tctggcactg
     6781 gaccggtttt tttgcggtca tcgccatcgc ggcggggatc tccgcgctat tgctgctgcc
     6841 atttctgaac gcccaggccc cacgcgagac ccacgaagcg tgatacacct cacctttttg
     6901 cgctgaatgg ggcaaaacta agaaattttc ccggttttgc ctggacgctg tcgcaggccc
     6961 cttttcctgt ggatttttac aatgcctgcc attcgcaggt ataaaaatta gctcaggagt
     7021 aatccatgct ggccttctta aaccaggtgc gcaagccgac cctggatctg ccgctcaatg
     7081 tgcggcgtaa aatgtggttc aagtcgttca tgcagtccta tctggtggtt tttatcggct
     7141 acctgaccat gtacctgatc cgcaaaaact ttaacatcgc gcagaacgac atgatctcta
     7201 cctacaggtt gagcatgacc gagctgggga tgattggcct gggcttctcg atcacctacg
     7261 gcgtggggaa aacgctggtt tcctactacg ctgacggtaa aaataccaag cagtttctac
     7321 cgtttatgtt gatcctctcc gctatctgta tgctcggctt cagcgccagc atgggcgcgg
     7381 ggtcaaccag tctgtttctg atgatcgctt tctatgccct gagcggtttc ttccagagta
     7441 ccggcggatc gtgcagctac tcgaccatca ccaaatggac tccgcgtcgt aaacgcggca
     7501 cctttctcgg cttctggaat atctcccaca acctcggcgg cgcgggcgcg gcaggcgtgg
     7561 cgctgttcgg cgccaactac ctgttcgacg gtcacgtcat cggcatgttt atcttcccgt
     7621 cgattatcgc gctgattgtt ggctttatcg gtctgcgttt cggcagcgac tccccggaat
     7681 cttacggtct gggtaaagct gaagaactgt tcggcgaaga gatcagcgaa gaggataaag
     7741 agactgaaga aaacgaaatg accaagtggc agatctttgt tgaatatgtg ttgaaaaaca
     7801 aagtgatctg gctgctgtgt ttctccaata tcttcctgta tgtggtgcgt attggtatcg
     7861 accagtggtc aaccgtctac gccttccagg aactgaaact ttctaaagag gtggcgattc
     7921 agggctttac cttgtttgaa gtgggcgcgc tggtcggcac gttgctgtgg ggctggctct
     7981 ctgacctggc gaacggtcgt cgcgcgctgg tagcctgtgt ggcgctggcg ttgatcatcg
     8041 ctaccctcgg cgtctaccag cacgccagca accagtatgt ctatctggcc tcgctgttcg
     8101 cgctcggttt cctggtgttt gggccgcagc tattaattgg tgtggcggct gtcggtttcg
     8161 taccgaaaaa agccatcggc gctgcggacg gtatcaaggg caccttcgat tatcttatcg
     8221 gcgatagctt tgctaagctg ggtctgggca tgattgccga cggcaccccc gtttttggtc
     8281 tgaccggttg ggcgggtacc ttcgccgcgc tggacgctgc cgcgatcggc tgtatctgcc
     8341 tgatggcgat ggtcgccgtg atggaagagc gcaaaatccg ccgtgagaaa aaaattcagc
     8401 aagtcaatat cgcttaaatg tgtgcatttg gtaacgtttt gcccggctta acgccgggct
     8461 tttttatgcc ttgcgttcgt cagacaggac atccggtgtc tggcgtaaat gaagacaggc
     8521 gttaataaat cacatcctga caggccagaa cgtcgacagt tataaattta ccgttatgat
     8581 gggcatcctg tttggtgacg gatgtgcgca tgatttggtt gattctggcc acgtttgtgg
     8641 tggtgtttat tgtgggtttt cgggtgctga catcggatac ccgccgggcg attcgccgtc
     8701 tgagcgaacg tctgaatatt gatgtagtgc cgatagaatc gatgattgat cagatgggta
     8761 aaacggcggg cggtgagttt ttacagtatc tgcatcgccc tgatgaatcg catttgcaaa
     8821 atgccgctca ggtgttactg atctggcaaa tggtgattgt cgatggcggc gatcagaatt
     8881 tgcagcggtg gcatcgcttg ctgcaaaaag cgcgtttagc cgcgccgatc accgacacac
     8941 aggtacggct ggcgctgggc tttttgcgcg aaatggaacc cgatatgcag gagatcaacg
     9001 cgtttcaact gcgctataac gccttttttc agccggaaga gggtgtccac tggctgcatt
     9061 gatactcttc actatctcgt taacaaaaga cgagatgaat gaggctggca agggcggcga
     9121 gccacgatta acggccggat ggcacgattc atcgttagcc aaataaagcg tagccgccat
     9181 cgtatttgct aagggtgaac cacagaagta acgcaccgaa taaccgctaa cgacgccaaa
     9241 acatcagaga cttatagctc atcatttctg tgacatatat cacggaaatg tgatcttgtt
     9301 ttgaacacca aaactgtgac tccttgccat acctcctgtc tcaaaatttc ttatcataaa
     9361 ctcgaagttg tacatgattg tctatagaca actctaaatg tttaggcgcg cactatgaaa
     9421 acattgagta aaagttcaca catcccactg tatcaacagg ttgtggagtg gataagggaa
     9481 agtatttata gcggagaatt ggttgaggat gaccggatac cttcagagtt tcaaatcatg
     9541 gatatgctgg aggtgagtcg cggtaccgtt aaaaaagcgg ttgaccaact tgtccgggaa
     9601 ggtgttcttg tgcaagtgca gggtaaagga actttcgtaa agaaggaaaa tgttgcttac
     9661 ccactgggtg aaggtttgct ctcctttgct gaagccttag ccagccagaa gataaacttc
     9721 acaaccagcg tcataacctc ccgactggaa cccgctaacc gctttgtagc agagaaactg
     9781 agtatcaaac cgggacaaga tgttttattt cttaaacgcc ttcgttgtat tggcgatgaa
     9841 aaagtcatgt tgattgaaaa tcgtatcaac attgatct
//
LOCUS       DAJVSD010000168         9864 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.168, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000168 DAJVSD010000000
VERSION     DAJVSD010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9864)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9864)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9864
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.168"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            1..1226
                     /gene="wcaK"
                     /locus_tag="OQP62_003200"
                     /pseudo
     CDS             1..1226
                     /gene="wcaK"
                     /locus_tag="OQP62_003200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461046.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="colanic acid biosynthesis pyruvyl transferase
                     WcaK"
     gene            1223..2443
                     /gene="wcaL"
                     /locus_tag="OQP62_003201"
     CDS             1223..2443
                     /gene="wcaL"
                     /locus_tag="OQP62_003201"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaL"
                     /protein_id="HCS1722676.1"
                     /translation="MKVSFFLLKFPLSSETFVLNQITAFIDMGHEVEIVALQKGDTQH
                     THAAWEKYGLAAKTRWLQDEPQGRLAKLRYRACKTLPGLHRAATWKALNFTRYGDESR
                     NLILSAICAQAGQPFVADVFIAHFGPAGVTAAKLRELGVLRGKIETIFHGIDISSREV
                     LSHYTPEYQQLFRRGDLMLPISDLWAGRLKSMGCPPEKIAVSRMGVDMTRFSHRPVKA
                     PGMPLEMISVARLTEKKGLHVAIEACRQLKAQGVAFRYRILGIGPWERRLRTLIEQYQ
                     LEDVIEMPGFKPSHEVKAMLDDADVFLLPSITGTDGDMEGIPVALMETMAVGIPVVST
                     VHSGIPELVEAGKSGWLVPENDAQALAARLAEFSRIDHDTLGSVIMRAREKVAQDFNQ
                     QAINRQLASLLQTI"
     gene            2454..3857
                     /gene="wcaM"
                     /locus_tag="OQP62_003202"
     CDS             2454..3857
                     /gene="wcaM"
                     /locus_tag="OQP62_003202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis protein WcaM"
                     /protein_id="HCS1722677.1"
                     /translation="MPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRQTVDIKDYP
                     ADDGIASFKQAFADGQTVVVPSGWVCENINAAITIPAGKTLRIQGAVRGNGRGRFILL
                     DGCQVVGEQGGSLHNVTLDVRGSDCVIKGVTMSGFGPVAQIFIGGKEPQVMRNLIIDD
                     ITVTHANYAILRQGFHNQMDGARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERI
                     DCTNGKINWGIGIGLAGSAYDNSYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIR
                     NVKAKNITPDFSKNAGIDNATIAIYGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIP
                     QNFKLNAIRLDNRQVAYKLRGIQISSGNAPSFVAITNVRMTRATLELHNQPQHLFLRN
                     INVMQTSAIGPALKMHFDLRKDVRGQFMARQDTLLSLANVHAINENGQSSVDIDRINH
                     QTVNVEAVNFSLPKRGG"
     gene            4035..4928
                     /gene="galF"
                     /locus_tag="OQP62_003203"
     CDS             4035..4928
                     /gene="galF"
                     /locus_tag="OQP62_003203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalU regulator GalF"
                     /protein_id="HCS1722678.1"
                     /translation="MMNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEI
                     VAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNV
                     RQAQPLGLGHSILCARPVVGDNPFIVVLPDIIIDDATADPLRYNLAAMVARFNETGRS
                     QVLAKRMKGDLSEYSVIQTKEPLDNEGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLS
                     ADIWAELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY
                     GLRNLKEGAKFRKSIEQLLHE"
     gene            5305..6390
                     /gene="rfbB"
                     /locus_tag="OQP62_003204"
     CDS             5305..6390
                     /gene="rfbB"
                     /locus_tag="OQP62_003204"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HCS1722679.1"
                     /translation="MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLS
                     DISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIV
                     GTYVLLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA
                     YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEG
                     KPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDL
                     LDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWY
                     LANTQWVNNVKSGAYQSWIEQNYEGRQ"
     gene            6390..7289
                     /gene="rfbD"
                     /locus_tag="OQP62_003205"
     CDS             6390..7289
                     /gene="rfbD"
                     /locus_tag="OQP62_003205"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HCS1722680.1"
                     /translation="MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPK
                     GVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANEIGAWVVHY
                     STDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKYLIFRTSWVYAGKGN
                     NFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVTLNKPEVAGLYHLVAG
                     GTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFG
                     LILPQWELGVKRMLTEMFTTTTI"
     gene            7337..8215
                     /gene="rfbA"
                     /locus_tag="OQP62_003206"
     CDS             7337..8215
                     /gene="rfbA"
                     /locus_tag="OQP62_003206"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HCS1722681.1"
                     /translation="MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTL
                     MLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGN
                     NDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQNGTAVSL
                     EEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSSRGELEITDINRIYMDQGRLSVAMM
                     GRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIKLAGPL
                     SKNDYGKYLLKMVKGL"
     gene            8216..8767
                     /gene="rfbC"
                     /locus_tag="OQP62_003207"
     CDS             8216..8767
                     /gene="rfbC"
                     /locus_tag="OQP62_003207"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HCS1722682.1"
                     /translation="MMIVIKTAIPDVLILEPKVFGDERGFFFESYNQQTFEESIGRKV
                     TFVQDNHSKSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGV
                     NLSAENKRQLWIPEGFAHGFVTLSDYAEFLYKATNYYSPSSEGSILWNDETIGIEWPF
                     SQLPELSAKDAAAPLLHQALLTE"
     gene            8773..9747
                     /locus_tag="OQP62_003208"
     CDS             8773..9747
                     /locus_tag="OQP62_003208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000018225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-6-deoxy-delta-3,4-glucoseen reductase"
                     /protein_id="HCS1722683.1"
                     /translation="MSHIIKIFPSNIEFSGREDESILDAALSAGIHLEHSCKAGDCGI
                     CESDLLAGEVVDSKGNIFGQGDKILTCCCKPKTALELNAHFFPELAGQTKKIVPCKVN
                     SAVLVSGDVMTLKLRTPPTAKIGFFPGQYINLHYKGVTRSYSIANSDESNGIELHVRN
                     VPNGQMSSLIFGELQENTLMRIEGPCGTFFIRESDRPIIFLAGGTGFAPVKSMVEHLI
                     QGKCRREIYIYWGMQDSKDFYSALPQQWSEQHDNVHYIPVVSGDDAEWGGRKGFVHHA
                     VMDDFDSLEFFDIYACGSPVMIDASKKDFMMKNLSVEHFYSDAFTASK"
     gene            9763..>9864
                     /locus_tag="OQP62_003209"
     CDS             9763..>9864
                     /locus_tag="OQP62_003209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate cytidylyltransferase"
                     /protein_id="HCS1722684.1"
                     /translation="MKAVILAGGLGTRLSEETIVKPKPMVEIGGKPIL"
BASE COUNT         2570 a         2139 c         2610 g         2545 t
ORIGIN      
        1 cattatgcgc ggtttgcttg atgccatccg tcaacaggcg ccagaggcgg agatggatgt
       61 gatgagccgt ttcccggtga gttcctcctg gttgcagggg cgaccgatta ttgccgaccc
      121 gctgtatcaa ttaagccaga aacagcaggc ggcggcaggg cttaacggtc gggtgaaaaa
      181 gtattacgcc gtcgttttca gcataaaatt ttattgtcta aagtcgccca ggaaggatcg
      241 ctgcgtaatt ttgctatcgc gccggaattt gccgaattcg cgcaatttat tgcgcagtat
      301 gacgccgtca ttcaggtggg cggttcaaac tatgtcgact tatacggttt gactcacttt
      361 gaatatccgc tgtgcgcgtt tatggcgaac aaaccaattt atatggtggg acatagcgtc
      421 ggccctttcc agaaccctga ctttaactag ctcgccaatt atgttttggg cgcaccagtg
      481 cgctgatcct gcgtgaaacc gtcagccgcg atctgatgac cgccgcgcag atcgataccc
      541 gaaaagtaga gcagggggtg gataccgcct ggttagtcga acgccgtcac gacgagtttg
      601 tcgccagtta tgctgtgcag cactggctgg acgtcaccgc gcgccgcaaa accgtcgcga
      661 ttacgttgcg cgatctggag ccgtttgata aacgcctggg caccactcag caggcctatg
      721 agcaggcatt tgcccaggtc gtgaatcgcc tgattgcgga cggttatcag gtactggcgc
      781 tgtcgacctg caccagtatc gatcgctata accgcgatga ccggatggtt gcgttacgga
      841 tggcgaagta tgtaaacgac tcagagcatt tccatatcgc gatggacgaa ctcaatgacg
      901 tggaaatcgg aaagatcctc gcatcctgcg tactgaccat cgggacgcgc ctgcattccg
      961 ccattatctc catgaatttt ggcacgcccg ctatcgccat taattatgaa cataaatccg
     1021 ccgggattat gcagcagcta ggcctggcgg aattggccat cgatatccgt cacttgctga
     1081 acggttcatt acaaagcgtg gtggccgata cgctcaatca attgcctgcg ctaaaggcaa
     1141 aagtggctaa cgccgtcacc gaggagcggg cgaaagggtt cacgatgatc aaatctgctc
     1201 tcgacagaat tcgggaggcg caatgaaagt cagctttttt ctgctgaaat ttccactctc
     1261 atcggaaacc tttgtgctga atcagattac tgcgtttatt gatatgggcc atgaggtgga
     1321 gattgtcgcg ttacaaaaag gcgataccca acatactcac gccgcctggg agaagtatgg
     1381 cctggcggcg aaaacccgct ggttacagga tgagccccag ggacggctgg cgaagctgcg
     1441 ctaccgggca tgtaaaacgc tgccggggct gcatcgggcg gcgacctgga aagcgctcaa
     1501 ttttacccgc tacggcgatg aatcacgcaa tttgatcctt tccgcgattt gcgcgcaggc
     1561 gggccaacct tttgtggcgg atgtgttcat cgcgcacttt ggtccggcgg gcgtgacggc
     1621 ggccaaactg cgcgaactgg gcgtgcttcg cggcaaaatc gagactattt tccacggaat
     1681 tgatatttcc agtcgcgagg tgctcagtca ttacacgccg gagtatcagc agttgtttcg
     1741 tcgtggcgat ctgatgctgc ccatcagcga tctgtgggcc ggtcgcctga aaagtatggg
     1801 ctgtccgccg gaaaagattg ccgtttcgcg catgggcgtc gacatgacgc gtttttccca
     1861 tcgtccggtg aaagcgccag ggatgccgct ggagatgatt tccgtcgcgc gcctgaccga
     1921 gaaaaaaggc ctgcatgtgg cgattgaagc ctgtcggcaa ctgaaagcgc agggcgtggc
     1981 gtttcgctac cgcattctgg ggattggccc gtgggaacgt cggctgcgca cgctcattga
     2041 gcagtatcag ttagaggatg tcattgagat gccgggtttt aaaccgagcc atgaagtgaa
     2101 ggcgatgctg gatgacgccg atgttttttt gctgccgtcg attaccggta cggatggcga
     2161 tatggaaggt attccggtag cgctgatgga gacgatggcg gtggggattc ccgtggtgtc
     2221 taccgtgcat agcggtattc cggaactggt ggaggccggc aaatccggct ggctggtacc
     2281 ggaaaacgat gcgcaggcgc tggcggcccg actcgctgag ttcagccgga ttgaccacga
     2341 tacgctgggg tcggtgatca tgcgcgctcg tgaaaaagtg gcgcaagatt ttaatcagca
     2401 ggcgattaat cgccagttag ccagcctgct acaaaccata taaacgaggt ggtatgcccg
     2461 cgactaaatt ctcccgacgt accctcctga cggcaggttc cgcgcttgct gttcttcctt
     2521 ttctgcgcgc cttgccggta caggcgcgtg aacctcgcca gaccgtcgat attaaggatt
     2581 atccggcgga tgacggtatc gcctcgttca aacaggcctt cgccgacggg cagactgtgg
     2641 tcgtgccgtc aggatgggtg tgtgaaaata tcaatgcggc gataacgatt ccggcgggaa
     2701 aaacgctgcg gatacagggc gcggtgcgtg ggaatggccg gggacggttt attttgctgg
     2761 acgggtgtca ggtggtgggg gagcagggcg gcagtctgca caatgtgacg ctggatgttc
     2821 gcgggtcgga ctgtgtgatt aaaggcgtga cgatgagcgg ctttggcccc gtcgcgcaaa
     2881 ttttcatcgg cggtaaggaa ccgcaggtga tgcgtaatct cattatcgat gacatcaccg
     2941 ttacccacgc caactacgcc attctccgcc agggatttca taaccaaatg gacggcgcgc
     3001 ggattacgca tagtcgcttt agcgatttgc agggggacgc cattgagtgg aatgtcgcga
     3061 ttcatgaccg cgacatcctg atttccgatc atgtcatcga acgcattgat tgtaccaatg
     3121 gcaaaatcaa ctgggggatc ggcatcgggc tggcgggtag cgcctatgac aatagttatc
     3181 ctgaagacca ggcagtaaaa aactttgtgg tggccaatat taccggatct gattgccgac
     3241 aactggtaca cgtagaaaat ggcaaacatt tcgtcattcg caatgtcaaa gccaaaaaca
     3301 tcacgcccga tttcagtaaa aatgcgggta ttgataacgc aacgatcgcc atttatggct
     3361 gtgataattt cgtcattgat aatattgata tgacgaatag tgccgggatg ctcatcggct
     3421 atggcgtcgt taaaggaaaa tacctgtcaa ttccgcaaaa ctttaaatta aacgctattc
     3481 ggttggataa tcgccaggtt gcttataaat tacgcggcat tcaaatttcc tccggtaacg
     3541 ccccctcatt tgttgccatc accaatgtac ggatgacgcg tgctacgctg gaactgcata
     3601 atcaaccgca gcacctcttt ttgcgtaata tcaacgtgat gcaaacttca gcgattggcc
     3661 cggcgttaaa aatgcatttt gatttgcgta aagatgtccg tggtcaattt atggcccgcc
     3721 aggacacgct gctttccctc gctaatgttc atgccatcaa tgaaaacggg cagagttccg
     3781 tggatatcga caggattaat caccaaaccg tgaatgtcga agcagtgaat ttttcgctgc
     3841 cgaagcgggg agggtaagta ccgctatttt tacgaaaatt cctgggaaaa agttgttcat
     3901 acttaatgtt atggtgccga ctaagacgta atgtagagcg tgccatcatt atccctggca
     3961 gcagagtaat tcatgctggc gaaaacaagc taaagagcta taattcagca accattttac
     4021 aggtggaaga aacaatgatg aatttgaaag cagttatacc ggtagcgggt ttgggtatgc
     4081 atatgttgcc tgccaccaag gcaatcccaa aagagatgct accgatcgtc gacaaaccga
     4141 tgattcagta cattgtcgat gagattgtgg ctgcagggat caaagaaatc gtgctggtga
     4201 ctcacgcgtc taaaaatgcc gttgagaacc acttcgacac ctcttatgaa cttgaatcgc
     4261 ttcttgagca gcgcgttaag cgtcagcttc tggcggaagt gcaatctatc tgcccaccgg
     4321 gcgtgacgat tatgaacgtt cgccaggcgc agccgttagg actggggcac tctattctgt
     4381 gcgcgcgtcc ggttgtgggc gataaccctt tcattgtggt actcccggat attattattg
     4441 atgatgctac cgccgatccg ctgcgctata accttgcggc gatggtggcg cgtttcaatg
     4501 aaacgggtcg cagccaggtg ctggcaaagc gcatgaaagg tgatttatcg gagtattccg
     4561 ttatccagac gaaagaacct ctggataatg aaggcaaagt cagccggatt gtggagttta
     4621 tcgaaaaacc ggatcagccg cagacgctgg attccgattt gatggcggta ggccgttatg
     4681 tgctttcagc cgacatctgg gcggaactgg aaagaaccga accgggcgcc tggggccgca
     4741 tccagcttac cgatgcgatt gctgaactgg cgaaaaaaca gtcggttgac gcgatgctaa
     4801 tgacgggcga cagctatgac tgcggtaaaa aaatgggcta catgcaggca tttgtgaagt
     4861 acgggctgcg caacctgaaa gaaggagcga agttccgtaa gagcatagag cagcttctgc
     4921 atgaataagt attaacaacc gtgataaatg gttggtgata aacataataa cggcagtgaa
     4981 cattcgaagc ggcaagttgg ctgaaacgag tgttgactgc cgttttagtt ttgtataaag
     5041 ggcttaagta acaaggggtt atctggagca ttttaatgct gattttataa gattaatcct
     5101 tgtttccgga tgcaattaat aagacaatta gcgtttaagt tttagtgagc tttgccctgc
     5161 tgggcgaggt ttgtaacaag tcgatatgta cgcagtgcac tggtagctga tgaaccaggg
     5221 gcggtagcgt gtgtaacgac ttgagcaatt aatttttatt ggcaaattaa ataccacatt
     5281 aaatacgcct tatggaatag aaaagtgaag atacttatta ctggcggggc aggttttatt
     5341 ggatcagctg ttgttcgcca tattattaag aatacacagg acactgtagt taatattgat
     5401 aaattaacct acgccggtaa tcttgaatcc ctttctgata tttctgaaag taatcgctac
     5461 aattttgaac acgcggatat ttgtgattcc gctgaaataa cgcgtatttt tgagcagtac
     5521 cagccggacg cggtgatgca tttggctgcg gaaagtcatg tggaccgttc gattaccggg
     5581 ccggcagcat ttattgaaac caatatcgtc ggcacctatg tacttcttga agttgcgcgt
     5641 aaatactggt ctgcgcttgg cgaagataaa aaaaataatt ttcgttttca tcatatttcc
     5701 actgatgaag tttacggcga tttaccacat cctgatgaag ttgaaaacag cgttacgttg
     5761 ccgttattta ctgaaacgac ggcatatgcg ccaagtagcc cctattctgc gtcaaaagca
     5821 tccagcgatc atttagtccg tgcctggcgg cgtacctatg gtctaccaac gatcgttacc
     5881 aattgttcta ataactatgg cccttatcac ttccctgaaa aactgattcc gttggtcatt
     5941 ttgaacgcac tggaaggaaa gcctttgcca atttatggca aaggggatca gattcgcgat
     6001 tggctatatg tagaagatca cgctcgcgcg cttcatatgg tagtgactga aggcaaggca
     6061 ggggagactt ataacattgg tggccacaat gagaagaaaa atctcgatgt ggtatttacc
     6121 atctgtgatc tgctggatga gattgtaccc aaagcgactt cttatcgtga acaaatcact
     6181 tatgtcgcgg atcgtccggg ccatgatcgt cgttatgcca ttgatgcagg taaaattagc
     6241 cgtgaattag gctggaaacc gctggagacc tttgaaagcg gtattcgtaa aacagtggaa
     6301 tggtaccttg caaatactca atgggtaaac aatgttaaaa gtggggcgta tcagagttgg
     6361 atagaacaga actatgaagg acgccagtaa tgaatatctt actttttggt aagacagggc
     6421 aagtaggctg ggagttgcaa cgttctctgg cgccagtggg gaatctgatt gccctggatg
     6481 tccattcaaa agagttttgc ggtgatttta gtaatccgaa aggcgttgcc gaaaccgttc
     6541 gtaagcttcg tcccgatgtg attgttaacg cagcagcaca tactgcagta gataaagcag
     6601 agtctgaacc agaactggcg cagttgctta acgccaccag tgtggaagcc atcgctaaag
     6661 cggccaacga aattggcgca tgggtagtgc attattcaac cgattatgta tttcctggta
     6721 ccggcgatat cccatggcag gaaacggacg ctacgtcgcc gctgaatgtc tatggcaaga
     6781 ccaaactagc gggagaaaag gccctgcagg ataactgccc taaataccta atcttccgca
     6841 ccagttgggt ttatgcaggt aagggcaata atttcgcaaa gacaatgctt cgtctggcga
     6901 aagagcgtca gacactttca gtcatcaacg atcagtacgg tgcgccaacc ggtgcggaat
     6961 tactggctga ctgcacggct catgcgatcc gtgtgacatt aaataaacca gaagtcgcag
     7021 gtctttacca tctggttgcc gggggaacta caacctggca tgactacgcg gcgttagtct
     7081 ttgacgaggc gcgcaaagca gggataacgc ttgcgctgac tgagcttaat gctgtgccga
     7141 ccagcgccta cccgacgccg gcgagcagac ctggtaattc gcgtctcaat actgaaaagt
     7201 ttcagcgtaa ttttggcctt attctgccgc aatgggaatt aggagttaag cgtatgctga
     7261 ctgaaatgtt tacgacgaca accatctgat aaatttaaat gcccataagg gcattttcta
     7321 tgaatgagaa atggaaatga aaacgcgtaa gggcattatt ttagcgggag gctccggcac
     7381 tcgtctttat ccggtgacca tggcggtaag taagcaattg ctaccaattt atgataaacc
     7441 gatgatttac tatccccttt ccacacttat gctggcaggc attcgggata tcctgatcat
     7501 cagtacgcca caggacacgc cgcgttttca acaactgctg ggagacggca gccaatgggg
     7561 gctgaatctt caatataaag tacagccaag tccggatggc ttagcacagg cgtttattat
     7621 tggtgaagag ttcattggta ataatgattg tgcattagtg ctgggtgaca atatcttcta
     7681 tggtcatgat ttaccaaagt taatggaagc tgccgttaat aaagaaagtg gtgctaccgt
     7741 cttcgcttat catgtaaacg atccagagcg ctacggtgtg gttgagtttg accaaaatgg
     7801 cacagccgtt agtctggagg aaaaaccgtt acaaccgaag agtaattacg cggtaacggg
     7861 gctgtatttt tatgataata gcgtggtgga gatggcgaaa aatcttaagc cttcctctcg
     7921 cggtgagtta gaaatcacgg atattaaccg tatctatatg gatcagggaa gattgtctgt
     7981 cgctatgatg gggcgcggtt atgcctggct ggatacggga acgcatcaga gtttgataga
     8041 ggccagtaat tttattgcaa ccatcgaaga acgccagggt ctgaaagtgt cttgcccgga
     8101 agagatcgca tttcgtaaaa attttataaa tgcacaacag gttataaaac tggccgggcc
     8161 attatcaaaa aatgattacg gcaaatattt gctgaagatg gtgaaaggtt tataagtgat
     8221 gattgtgatt aaaacagcaa taccagatgt cttgatctta gagcctaaag tttttggcga
     8281 tgagagggga ttcttttttg aaagttataa ccagcagacc tttgaagagt cgattggacg
     8341 taaagttaca tttgttcaag ataatcattc aaaatccaaa aagaatgtac tcagagggct
     8401 acattttcag agaggagaaa atgcacaggg aaagttagtt cgctgtgctg tcggtgaggt
     8461 ttttgatgtt gcggtcgata tccgaaaaga atcacctact tttggtcagt gggttggcgt
     8521 aaatctatct gctgagaata agcgacagct ttggattcca gaaggttttg ctcatggttt
     8581 tgttactctc agtgattatg cagagtttct gtacaaagca actaattatt actcaccttc
     8641 atcggaaggt agcattctat ggaatgatga gacaataggt attgaatggc ctttttctca
     8701 gctgcctgag ctttcagcaa aagatgctgc agcaccttta ctgcatcaag ccttgttaac
     8761 agagtaagca tcgtgtctca tattattaag atttttccat caaatattga attttccggt
     8821 agagaggatg aatcaatcct cgatgctgcg ctatcggctg gcatccatct tgaacatagc
     8881 tgcaaagcgg gtgattgtgg tatctgtgag tccgatttgt tagcgggaga agttgttgac
     8941 tccaaaggta atatttttgg acagggtgat aaaatactaa cctgctgctg taaacctaaa
     9001 accgcccttg agctaaatgc gcattttttt cctgaactag ctggacagac aaaaaaaatt
     9061 gtcccatgca aggtaaatag tgctgtactg gtttcaggcg atgttatgac tttgaagtta
     9121 cgcacaccac caacagcaaa aattggcttc tttccagggc agtatatcaa tttacattat
     9181 aaaggtgtaa ctcgcagtta ttctatcgct aatagtgatg agtcgaatgg tattgagttg
     9241 catgtaagga atgttcccaa tggtcagatg agctcgctca tttttgggga gttacaagaa
     9301 aatactctta tgcgcattga aggaccttgc ggaacatttt ttattcgtga aagtgacaga
     9361 cctataatct tccttgcagg cggtactgga ttcgctccag ttaaatcaat ggttgagcat
     9421 ctcattcagg gaaaatgtcg tcgtgagatc tacatctact ggggaatgca agatagtaaa
     9481 gatttttact ctgcattacc gcagcagtgg agtgaacagc acgacaacgt tcattatatc
     9541 cctgttgttt ctggtgatga cgccgaatgg gggggaagaa agggatttgt ccatcatgct
     9601 gtgatggatg attttgattc tctagagttc ttcgatatat atgcatgtgg ttcacctgtg
     9661 atgatcgatg ccagtaaaaa ggactttatg atgaaaaatc tctctgtaga acatttctat
     9721 tctgatgcat ttaccgcatc taaataatat tgaggataat ttatgaaagc ggtcatcctg
     9781 gctggtggac ttggtaccag attaagtgaa gaaacaattg taaaaccaaa accgatggta
     9841 gaaattggtg gcaagcctat tctt
//
LOCUS       DAJVSD010000169         9858 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.169, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000169 DAJVSD010000000
VERSION     DAJVSD010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9858)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9858)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9858
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.169"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(64..405)
                     /gene="sigE"
                     /locus_tag="OQP62_003210"
     CDS             complement(64..405)
                     /gene="sigE"
                     /locus_tag="OQP62_003210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone SigE"
                     /protein_id="HCS1722685.1"
                     /translation="MESLLNRLYDALGLDAPEDEPLLIIDDGIQVYFNESDHTLEMCC
                     PFMPLPDDTLTLQHFLRLNYASAVTIGADADNTALVALYRLPQTSTEEEALTGFELFI
                     SNVKQLKEHYA"
     gene            complement(422..2107)
                     /gene="sopB"
                     /locus_tag="OQP62_003211"
     CDS             complement(422..2107)
                     /gene="sopB"
                     /locus_tag="OQP62_003211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system effector
                     inositol phosphate phosphatase SopB"
                     /protein_id="HCS1722686.1"
                     /translation="MQIQSFYHSASLKTQEAFKSLQKTLYNGMQILSGQGKAPAKAPD
                     ARPEIIVLREPGATWGNYLQHQKTSNHSLHNLYNLQRDLLTVAATVLGKQDPVLTSMA
                     NQMELAKVKADRPATKQEEAAAKALKKNLIELIAARTQQQNGLPAKEAHRFAAVAFRD
                     AQVKQLNNQPWQTIKNTLTHNGHHYTNTQLPAAEMKIGAKDIFPSAYEGKGVCSWDTK
                     NIHHANNLWMSTVSVHEDGKDKTLFCGIRHGVLSPYHEKDPLLRQAGAENKAKEVLAA
                     ALFSKPELLNRALEGEAVSLKLVSVGLLTASNIFGKEGTMVEDQMRAWQSLTQPGKMI
                     HLKIRNKDGDLQTVKIKPDVAAFNVGVNELALKLGFGLKASDSYNAEALHQLLGNDLR
                     PEARPGGWVGEWLAQYPDNYEVVNTLARQIKDIWKNNQHHKDGGEPYKLAQRLAMLAH
                     EIDAVPAWNCKSGKDRTGMMDSEIKRELISFHQTHMLSAPGSLPDSGGQKIFQKVLLN
                     SGNLEIQKQNTGGAGNKVMKNLSPEVLNLSYQKRVGDENIWQSVKGISSLITS"
     gene            2439..2609
                     /locus_tag="OQP62_003212"
     CDS             2439..2609
                     /locus_tag="OQP62_003212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlcI/YnfO family protein"
                     /protein_id="HCS1722687.1"
                     /translation="MPAKPRTSKTVTKNIRFSYSMLEQIEFALKSEKTRNFSAWVKEA
                     CREKLCNTGHKL"
     gene            complement(2610..2720)
                     /locus_tag="OQP62_003213"
     CDS             complement(2610..2720)
                     /locus_tag="OQP62_003213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_447525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722688.1"
                     /translation="MTLQTNISRETKAAKTQEVYKHVVLFKMAAPSYIRR"
     gene            complement(2829..4298)
                     /locus_tag="OQP62_003214"
     CDS             complement(2829..4298)
                     /locus_tag="OQP62_003214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C69 family dipeptidase"
                     /protein_id="HCS1722689.1"
                     /translation="MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGS
                     ANNAKHKVIHPVAFHQQGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNS
                     AGVGMSATETIYNGRAALAADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQ
                     KGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANY
                     MASPTLVSFAKKQGLYDPARGEFDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTV
                     VSEGETFSVFLTPITKISVAAVKNALRNHYQGTSHDPYASHNPQEPWRPISVFRTQES
                     HILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHYQPGDDKGTDRASNDSTYWT
                     FRTLQTLVMQDYNTFAPDVQHAWKTFEQQTAKQQYKMEQSYLRLYASHPKEAQRLLQN
                     FEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSSTQP"
     gene            complement(4471..5835)
                     /locus_tag="OQP62_003215"
     CDS             complement(4471..5835)
                     /locus_tag="OQP62_003215"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_447527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal sensor histidine kinase"
                     /protein_id="HCS1722690.1"
                     /translation="MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMT
                     LINRAAQMQQLLLDGARPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRF
                     NEIPLAKNITRETLFRQAVQGTELTAVRVNARSGDNPLTLTIARLATERRQMLAQYRR
                     NSLLISLIAILVCSALSPLVIRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRP
                     LGQALNTMRQKLSDDFERLNQFADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQAL
                     VDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNALVENMLDYLSPLAEEKHIC
                     FINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIESAYDDNVAEIRVANPGSP
                     TADADKLFRRFWRGDNARYTAGFGLGLSLVNAIALLHGGSASYRYADEHNIFSVRLPD
                     SGDS"
     gene            complement(5828..6508)
                     /gene="hprR"
                     /locus_tag="OQP62_003216"
     CDS             complement(5828..6508)
                     /gene="hprR"
                     /locus_tag="OQP62_003216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000698203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor HprR"
                     /protein_id="HCS1722691.1"
                     /translation="MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEH
                     YSLIILDIMLPGLDGWQVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPF
                     SFAELLARVRAQLRQHVPVFTRLTINGLDMDATKQSVLRNGKPISLTRKEFLLLWLLA
                     SRAGEIVPRTAIASEVWGINFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVQGMGYRL
                     QAETSQNG"
     gene            6644..7054
                     /gene="hiuH"
                     /locus_tag="OQP62_003217"
     CDS             6644..7054
                     /gene="hiuH"
                     /locus_tag="OQP62_003217"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HCS1722692.1"
                     /translation="MKRYILATAIASLVAAPAMALAAGSNILSVHILDQQTGKPAPGV
                     EVVLEQKKDNGWTQLNTGHTDQDGRIKALWPEKAAAPGDYRVIFKTGQYFESKKLDTF
                     FPEIPVEFHISKTNEHYHVPLLLSQYGYSTYRGS"
     gene            complement(7387..7899)
                     /locus_tag="OQP62_003218"
     CDS             complement(7387..7899)
                     /locus_tag="OQP62_003218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase reductase
                     subunit"
                     /protein_id="HCS1722693.1"
                     /translation="MQVDEQRLRFRDAMASLAAAVNIVTTAGHAGRCGITATAVCSVT
                     DTPPSVMVCINANSAMNPVFQGNGRLCINVLNHEQELMARHFAGMTGMAMEERFHQPC
                     WQNGPLGQPVLNGALASLEGEISEVQTIGTHLVYLVAIKNIILSQEGHGLIYFKRRFH
                     PVRLEMEAPV"
     gene            complement(7917..9278)
                     /gene="hpaB"
                     /locus_tag="OQP62_003219"
                     /pseudo
     CDS             complement(7917..9278)
                     /gene="hpaB"
                     /locus_tag="OQP62_003219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000801462.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     oxygenase component"
     gene            complement(9330..9770)
                     /gene="hpaR"
                     /locus_tag="OQP62_003220"
     CDS             complement(9330..9770)
                     /gene="hpaR"
                     /locus_tag="OQP62_003220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoprotocatechuate degradation operon regulator
                     HpaR"
                     /protein_id="HCS1722694.1"
                     /translation="MHDSLTIALLQAREAAMTYFRPIVKSHNLTDQQWRIVRILADSP
                     SMDFHELAFRTCILRPSLTGILTRMERDGLVLRLKPVNDQRKLYVMLTEQGQTLYARA
                     RSEVEEAYRKIEADFTPEKTQQLMLLLDDLIALGRQHPDSEAEA"
BASE COUNT         2361 a         2431 c         2410 g         2656 t
ORIGIN      
        1 tctcttgtaa agggcatacg tatcgcgttt tatctcatta agaaagtatg ttgacgtatt
       61 aaattatgca taatgctctt tcaattgctt cacgtttgaa atgaataatt caaaaccagt
      121 gagcgcctct tcttcggtac tggtttgcgg caagcgataa agcgccacta aagcagtatt
      181 gtctgcatca gcgccgatag tgacggcgct ggcgtagtta agacgtaaaa aatgctgcaa
      241 agtcagagtg tcgtcaggca gtggcataaa gggacagcac atttccagtg tatgatcgga
      301 ttcattaaaa taaacctgta tcccatcatc aatgataagc agtggctcat cttctggcgc
      361 atccaggcct aacgcgtcat ataaacgatt taatagactt tccatatagt tacctcaaga
      421 ctcaagatgt gattaatgaa gaaatacctt ttactgactg ccaaatattt tcatccccaa
      481 ctcgtttttg ataggaaaga ttgagcacct ctggcgataa atttttcatt actttgtttc
      541 ccgccccgcc cgtattttgt ttctgaatct ccaggttacc gctattcagt aatacttttt
      601 ggaaaatttt ctgtccaccg ctatccggaa gactaccagg cgcacttaac atatgggtct
      661 gatggaaaga aatgagctct cgcttgattt ctgaatccat catccctgta cgatctttgc
      721 cgcttttaca attccaggcg ggcaccgcgt caatttcatg ggctaacatg gcaaggcgtt
      781 gtgcgagttt atagggttcg ccgccatctt tatgatgttg gttatttttc cagatatcct
      841 taatctggcg cgctaatgta ttgacgacct cataattatc cgggtattgc gccagccatt
      901 cgccaaccca gccacctggt ctggcttcag ggcgtaaatc attgcctaat aactgatgta
      961 gcgcttcggc attatagcta tctgatgctt taaggccaaa gccgagcttg agcgccagct
     1021 cattaacacc cacattaaat gcggcgacgt ccggttttat ttttaccgtc tgtagatcgc
     1081 catctttatt gcggattttt aaatgaatca tttttcccgg ctgggtcaac gattgccatg
     1141 cgcgcatttg atcctcgacc atagttccct ctttgccgaa aatattcgac gcggtgagta
     1201 acccgacgga taccagtttc aggcttaccg cttcgccctc taaggctctg ttaagcaact
     1261 caggtttact aaaaagtgcc gcagctaata cttctttggc tttgttttca gcgccggcct
     1321 gacgcagaag cggatctttt tcatgatagg gggaaagcac accatgacgt atcccgcaaa
     1381 aaagcgtttt atctttaccg tcctcatgca cactcaccgt ggacatccac aaattattgg
     1441 cgtgatgaat attcttggta tcccaactgc atacgccctt tccctcataa gcactgggaa
     1501 agatatcttt tgcgccgatt ttcatctctg cggcagggag ctgcgtgttg gtatagtgat
     1561 gcccgttatg cgtgagtgta ttttttatgg tttgccaggg ctggttattg agctgcttga
     1621 cctgagcatc tctaaacgct actgccgcaa agcgatgagc ttcttttgca ggtaagccat
     1681 tttgctgctg agtgcgtgct gcaataagtt cgataagatt tttcttcaat gcttttgccg
     1741 cagcttcttc ttgttttgtt gctggccggt ccgctttaac tttggctaac tccatttggt
     1801 ttgccattga cgttagaacc gggtcttgtt tacccagaac ggttgccgcg acggtaagaa
     1861 gatcgcgctg taagttatag aggttatgca gcgagtggtt agacgtcttc tgatgctgta
     1921 gataattccc ccatgtcgcg ccaggttctc gcaggacaat aatttccggg cgagcgtcgg
     1981 gcgctttagc cggcgctttg ccctggcctg agagaatctg cattccgttg tataaggttt
     2041 tttgtaggct tttaaaagcc tcctgggttt ttagtgaagc tgagtgatag aagctctgta
     2101 tttgcatagc gtttttaata ttcctgaata ggggagtggg aacattcaac agggttaaca
     2161 atcttttaaa aggatgtgac ttttatgcac caggaacttt aaaaaaatgt cctttttaat
     2221 gaggaaacgc ttctgatcag gcggggaggc atcctgacgt ccatacgtag tggcgatcat
     2281 gggggagatc ggtacatcaa atgttcataa aatctacaaa cttcacaatt tagggcacaa
     2341 cttttattga aaacccacct tcttgattca gatcaaattc accgatttac tcctgcgtaa
     2401 agtaacggcg ttacatcaaa tgttatacag gtgtgtgtat gccagcaaag ccccggacga
     2461 gtaagaccgt gacgaagaat attcgttttt cctattccat gcttgaacag atagaattcg
     2521 cgttgaaatc tgaaaagacg cggaattttt cagcatgggt aaaagaggcc tgtcgggaaa
     2581 agttatgtaa cacgggacat aagctgtagt tatcgtctta tgtaagaggg ggcggccatt
     2641 ttgaaaagaa caacgtgctt atatacctcc tgggtctttg ccgcttttgt ctctctgctg
     2701 atatttgtct ggagtgtcat aaactatcct ctctatgaat ccataataat tattgtcttt
     2761 tatatctggc taattctggt accgctttat cttattgtgt atgagtggct aatagattgt
     2821 cattaaattt atggctgcgt acttgaaaag tgatatttca tatctgtgcg gtaagtcatt
     2881 gtcgtaataa tattattggt caggcgacgg gcgagcgtct gcgcattttg catcgtttta
     2941 tcttcaaaat tttgcagtaa gcgttgtgct tctttcggat gcgacgcata taatctcaga
     3001 tagctctgct ccatcttata ctgttgctta gctgtttgct gttcaaatgt tttccaggca
     3061 tgttgcacat ctggcgcaaa cgtattgtag tcttgcataa ccagtgtttg cagcgtgcgg
     3121 aatgtccagt aggtagagtc gttgctcgcc cgatcggttc ctttatcatc tccgggttga
     3181 taatgacgca tcccctggta ataggggaga tagacgctaa gagatggcat tccataggcg
     3241 atgtattcta cgttgccgat agcctgcggt aatttcggtc tgacctgtaa aatatgtgac
     3301 tcctgggtac gaaaaacgga tataggtcgc catggttctt gtggattatg actggcataa
     3361 gggtcgtgcg acgttccctg atagtgattg cgtaacgcgt tttttactgc cgccacgctg
     3421 atcttcgtta ttggcgttaa aaaaacagaa aatgtttccc cttcgctaac gaccgtatcc
     3481 agatgcggat taaactggtg ttgtagcgtc cagacgcgcg gataattata ggtggtatcg
     3541 tttttgttat cctgcgaata ggcttgatga aagtcgaatt cgccgcgggc cggatcatat
     3601 aatccctgct ttttcgcaaa gcttactaac gttggtgacg ccatataatt cgcgttatca
     3661 ttcggatcgt aatggcgtaa acgtccctga ttggcggaaa cgaaatagct atctgccgga
     3721 agtcgtactg ccagccattg atgtccgctt cccgtctcca gataccatat ctctttgcta
     3781 tcaataaacg cgacgccgaa accttcgccc gcgccttttt gttcaataat atctcccagt
     3841 aatttggcgc cctgacgcgc cgattgcgcc actggcagga tcacggactc aatggcgtct
     3901 tccgtgattc ccgtttttgt cacgtaagga tcggcagcca gcgccgctct gccgttgtaa
     3961 atggtttccg ttgcgctcat tccgacgccc gccgaattga aaccggcttc acccatggcg
     4021 ttatcgttag tatcaaagtc atgaatcgcc gtatagcgca tcgctgtctc cggaagcggc
     4081 cagctaaaat tgttgcgatg tgctttatac tcgccttgtt gatgaaacgc gacgggatga
     4141 ataaccttat gcttggcgtt atttgccgag ccatcctcgt tgcgcgcgat aataaaggag
     4201 ccgtcagccg aagcctgatt gcctaccaaa agggtagtac aggcgatgac tttacccata
     4261 cccagcagcg taacggcgaa agcaagatac tttttcataa aggttcccac tgaataacgc
     4321 gttatgggat gaattgaccc tggattggaa accgagaaag tgatcgagcc agcaatattc
     4381 tttaccggca tcctttattt tctttttatt gaggttgtat tgataaccac agccctgtgg
     4441 cagggaaggg gaacagaacc tgtactgacc ttagctatca ccgctatcag gcagacgaac
     4501 cgaaaagata ttatgttcat cggcatagcg gtaagatgcc gagccaccgt gcaatagggc
     4561 aatcgcgtta actaacgata accccaggcc gaaaccggca gtgtagcggg cattatctcc
     4621 tcgccaaaaa cgccggaaaa gcttatccgc atcggcggtg gggctgcccg gattagcgac
     4681 ccgaatttct gcaacgttat catcataagc gctttcaata cgtatcacgg cgttttcatc
     4741 agaataacgg atggcattcg tcagcaggtt tgagagcact ctttgtaata atatttcgtc
     4801 agcccatacc gttccctgac attgatttat aaaacagatg tgcttctctt cggcaagggg
     4861 gctaagataa tccagcatat tttcgaccag cgcattgagc gaaacaggct gtttttttac
     4921 cgctatattc tggtgctccg cgcgtgccag aaagagaata ttttctgtca gtcgcgacag
     4981 tccctccagc tcttcaatat tatcgacaag ggcttgttga tactcttcgg cgctgcgttc
     5041 ctgactcagc ataacctgat tcttccccag taaaatatta accggcgtgc gcagctcatg
     5101 cgccagatcg tcggcaaatt ggttcaggcg ttcaaaatcg tcggaaagct tctggcgcat
     5161 ggtatttagc gcttgcccaa gcggcctgag ctcgacgggt aacgcctgtt ccgccagcgg
     5221 ctggcgaagt gtgccgctat ctgtcgccgc ggtgagtcgg ctgagcgacg taatggcccg
     5281 cagcccgttt ctgatgacta atggactgag cgccgaacag acgaggatcg cgataaggct
     5341 aatcagcaaa ctgttgcggc gatattgcgc cagcatttgc cgcctttccg tcgccagcct
     5401 ggcaatagta agggtcagcg ggttatcgcc gcttctggcg tttactcgta ccgcggtcag
     5461 ctccgtgcct tgtaccgcct ggcgaaataa ggtttcgcgg gtgatgtttt tagccagcgg
     5521 aatctcgtta aagcgttggt cggggatgcc gctatgatta atcgcaacat tatggcctgt
     5581 tgctgagtgg atcaataaga tatcctgctt cgtatccacc atccgattga aatagagcgg
     5641 cagattttcc ggcctggcgc catccagtaa cagttgctgc atttgcgccg cccgatttat
     5701 tagcgtcata tcatcccgat acgttaattc tttgctcagc gcgttataga gcgtccagct
     5761 aatgccggta caggcgagga taagtatggc gataaaagaa attgtcaggc gcagcgtcat
     5821 tgataactta accattctgc gacgtttccg cctgtaatcg ataacccatc ccctggacgg
     5881 tcataatgag cttcttttca aatggatcgt ctactttggc gcgcagccga cgaatcgcga
     5941 catcaacggt gttggtttca ctatcaaagt taattcccca aacttcgctg gcgatcgcgg
     6001 ttcggggcac gatttcccct gcccgggacg ccagtaacca gaggagcagg aattctttgc
     6061 gggtcaggga aatcggtttg ccatttcgta acaccgattg ctttgtggca tccatgtcca
     6121 gaccattgat cgtcagtcgg gtaaagaccg ggacatgctg tctgagttga gctctcaccc
     6181 gggccagcag ttcggcgaag gaaaaaggct taacaaggta atcattagcg cccgcctcaa
     6241 gacctttgac gcgatcctca accgagtcgc gcgccgtcag gcaaataaca gggggctgat
     6301 atgcagtgcg caacgcgcgt aaaacctgcc atccatcaag ccccggcagc ataatatcaa
     6361 gaataatcaa tgaataatgt tcctgaaggg ctaggtgtaa tccgtctcgt ccatcacagg
     6421 cataatcaac cacatagcct gcctccgtga gtccctgacg tacccactca atggttttct
     6481 ggttatcttc aatcaataaa atcttcatca acgcagtatg ccataggctt gttagcgaat
     6541 ccgtaaatct ccaacaagat gacataattg tcatgtccgt gtaaggttaa tcctggacgc
     6601 gccagatata ttttcctgca tcaataccgt aaaggagtga agcatgaaac gatatatact
     6661 ggctaccgcg atagcgtctc ttgttgcagc cccggcaatg gcgctggccg ctggcagcaa
     6721 tattctcagc gtacatattc tcgatcagca aacaggcaaa ccagcgcccg gcgtggaggt
     6781 ggtactggag cagaaaaagg ataacggatg gacgcaatta aacaccgggc ataccgacca
     6841 ggatggacga attaaagcac tgtggcccga aaaagctgcc gcgccggggg attatcgcgt
     6901 tatttttaaa accggccagt attttgaaag taaaaaactg gacacgtttt tcccggagat
     6961 tcccgtcgag tttcatatca gcaaaacgaa tgagcactat catgtgccgc tgttattaag
     7021 tcagtatggt tattcaacct atcgcgggag ctaatttaga gcctatccta ttagggctat
     7081 tttacttgcc attttggtcc tgggcagtgc tcgccaaaac gcgttagcgt tttgaacgcc
     7141 gcttgcggcg gcccgaaggg cgagcgtagc gagtcaaacc tcacgtacaa cgtgtacgct
     7201 ccggtttttg cgcgctgtcc gtgtccaaac aggctgcgcc aataacgcct ggtgggacag
     7261 gctcttagat tttattaatc gccgggattt atggcgagca aacatcgcgg cgggaataaa
     7321 aatcttcagc gtatcgactc tcctcccaca agcggtggtt atcccgcttg tgggtatgag
     7381 tgacggttaa acaggcgctt ccatctcaag tctgaccgga tgaaaacggc gtttgaaata
     7441 aatcaggcca tgcccctcct ggctaagaat aatatttttg atcgccacca gatacaccag
     7501 atgcgtgcca atggtttgta cctcgctgat ctcgccttca agactggcca gcgcgccgtt
     7561 aagtaccggc tggcccagcg gcccgttttg ccaacatggc tggtgaaaac gctcctccat
     7621 cgccatcccc gtcataccgg caaagtggcg cgccatcagc tcctgctcat ggttaagtac
     7681 attaatgcac agcctgccgt tgccctgaaa aacggggttc atggcgctat tggcattaat
     7741 acataccatc acggagggcg gcgtatcagt gactgagcaa accgctgttg cggtgatacc
     7801 gcagcgtccg gcgtgacccg ccgtggttac gatgttgacc gctgccgcca gacttgccat
     7861 cgcatcgcga aaacgcagac gttgttcatc tacttgcatg agaacctcct gccgcgttat
     7921 ttcagcagct tatccagttg attgatgtcg tcgttattgt gcaaatgcga aaccgtccag
     7981 ccattctgat cgtattcgga gaggcagcga tcgaccattg ccatcatctt atccatattg
     8041 ccggagctct gggcctgacg cagacactgc agacgaattt catcctggct gcccgagtag
     8101 ttaatctcgt acagctcatg gcgaccgcca aactcgctgc cgatggcatc ccacatcaat
     8161 ttaagaattt tgatacgttc aacatggtcc attccgttag agccgcgtac gtatttcgcc
     8221 aggtactggt cgatttgcgg attattcaga tcgcgggcgc tggaaggcag gtaaatcagg
     8281 ccgctggtaa cgttacgttc aataatattt ttaattttcg cgtaggccat tggggccatc
     8341 acacgatagg tttgcagcgc ggcgtggtcc ggtagccagg cgccgtttac ccacggggtt
     8401 gcttcagaac acatagaatc gctcaatgcc cagaacatat tgcgccaggc cacgacttcg
     8461 ccgagatcgg cctgcacgcc ccggaactct acggtacccg tacattcgag cgattttttc
     8521 agcagcgcgg taatgaaatc aagttttacc gccagacgaa cacaggcttg cagtggatac
     8581 atacgggcaa agccgccttc catcgtccag cgacgacaac gatcgaaatc acggtaaatt
     8641 aatacgtttt cccacgggat cagcaccttg tccatcacca gaatggcatc gttttcatca
     8701 aaacggctgg agaggggata atcaaacggc gagcccgtcg cgcccgcgac catttcatac
     8761 gaggcgcgcg aaataagttt tacgccttcg gcatccattg gcgcgacaaa catcagagca
     8821 aaatccgggt tttcgcccat cacctgggct gagccgaaac caatcatgtt gtagtgagtc
     8881 agggcggagt tagtggcgac aactttcgcc ccgctgacaa taatcccggc gtccgtctct
     8941 ttctccagct tgatatagac gtctttcact tcgtcggcag gtttgtggcg gtcaatgggc
     9001 gggttgacga ttgcatggtt aaagtacagg ccggtctcct gaatacgggt gtaccagtta
     9061 cgggcgttct gctcaaactg gccgtagaag gctgggttag cgcccagagc gcagccaaag
     9121 gcggctttgt aatccggtgt gcgtcccatc cagccgtaac tcaggcgtga ccactcggcg
     9181 atagcatcac gctgttggcg cagatcgtct gcgcttttcg ccacgcggaa aaatttatgc
     9241 gtataaccgc cgctgccggt atcggtattc cagcacaggg tgtaagcggg aggggattcc
     9301 cgtgtcggcg gcgtgggaag gtaagaatac tatgcttccg cttcgctatc aggatgctgg
     9361 cgccccagag caataagatc gtccagcagc agcatcaatt gctgtgtttt ttcgggcgtg
     9421 aaatcggcct caatttttcg ataagcctct tctacctcgc tccgggcacg ggcgtacaac
     9481 gtttgtccct gctccgtcaa catgacatat aacttacgct gatcgttaac cggcttgagt
     9541 cgcaacacca gtccgtctcg ctccatgcgc gtcaatattc cggtcagact tggacgcaaa
     9601 atacaggtac gaaaggccag ctcgtgaaaa tccatagagg ggctatcggc caggattcgc
     9661 acaatgcgcc attgctggtc ggtcagattg tggcttttaa cgatggggcg gaaataggtc
     9721 attgccgctt cgcgcgcctg aagcaaggcg atggttaatg aatcatgcat aagcgtttct
     9781 cttttgcaga attattaata cctgaataat cgtgtttacc gatgtgagct atgacatctg
     9841 ttttatgtcc aaagttta
//
LOCUS       DAJVSD010000170         9761 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.170, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000170 DAJVSD010000000
VERSION     DAJVSD010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9761
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.170"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(316..405)
                     /gene="cbdX"
                     /locus_tag="OQP62_003221"
     CDS             complement(316..405)
                     /gene="cbdX"
                     /locus_tag="OQP62_003221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-II oxidase subunit CbdX"
                     /protein_id="HCS1722695.1"
                     /translation="MWYLLWFVGILLMCSLSTLVLVWLESRQQ"
     gene            complement(418..1554)
                     /gene="appB"
                     /locus_tag="OQP62_003222"
     CDS             complement(418..1554)
                     /gene="appB"
                     /locus_tag="OQP62_003222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HCS1722696.1"
                     /translation="MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDD
                     ERRVLINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCALFLRPL
                     AFDYRGKIANARWRALWDTGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYFGT
                     FWQLLSPFALLCGLLSLSLVIMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLA
                     GYWLWAGVDGFVLLTQDANGPSNPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPI
                     LAFYACLRGQTIRGFLFASLTQACVIFTAGITLFPFVMPSSVSPLSSLTVWDSTSSQM
                     TLEIMLVIVLIFLPIVLLYTLWSYYKMLGRINLETLRRNDHELY"
     gene            complement(1566..3110)
                     /gene="appC"
                     /locus_tag="OQP62_003223"
     CDS             complement(1566..3110)
                     /gene="appC"
                     /locus_tag="OQP62_003223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-II oxidase subunit 1"
                     /protein_id="HCS1722697.1"
                     /translation="MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAVMETIYVVTG
                     KTVYRDMTRFWGKLFGINFALGVAIGLTMEFQFGTNWSLYSNYVGDIFGAPLAMEALL
                     AFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNISALWILNANGWMQYPTGAHFN
                     IDTLRMEMSSFSDLVFNPVSQVKFVHTVMSGYVTGAMFIMSISALYLLRGREREVALR
                     SFAIGSVFGTLAILGTLQLGDSSAYEVAQIQPVKLAAMEGEWQTEPAPAPFHLIAWPQ
                     QEQERNAFAVKIPALLGILATHSLDTPVPGLKNLMDDALPRLKRGREAWLLMQEIAQG
                     NRSPQVLNAFHAVEGDLGYGILLAKYAPDMNHVTPEQYRAAQRGAIPQVAPVFWSFRI
                     MVGCGSLLLVVMLIALIQTLRMRIDQHRWVLRMTLWSLPLPWIAIEAGWFMTEFGRQP
                     WAIQDILPTWYAHSALTPGQLAFSMGLILGLYTLFLIAEVYLMQKYARLGPSAMQHQQ
                     QAQQQG"
     gene            complement(3185..4033)
                     /locus_tag="OQP62_003224"
     CDS             complement(3185..4033)
                     /locus_tag="OQP62_003224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein"
                     /protein_id="HCS1722698.1"
                     /translation="MSNAFFHLLGPGTQPDDASFSMNPLPLTCQVNGDPSMAALERCA
                     HSPAVMALLTDLRGQLARRIPEVGDVLGWELSPLNADDLSFLNTLLGEGEVSVRIQHP
                     DGSESEIQETIFCGLWRVRHLHNRRLLTDRLEAGSAPLTLWQAATADTLPDDSLLPPP
                     VAGLMNGLPLAHELLAHVRDPALQPHSINLTQLPLSEADRLFLARLCGHGNIQIRISG
                     YGESQINATALRHLWHVRCLDALKGPLLDSYEICPLPELVLAAPEDLADSRQRLDEVC
                     RWLETR"
     gene            complement(4030..4434)
                     /gene="hyaE"
                     /locus_tag="OQP62_003225"
     CDS             complement(4030..4434)
                     /gene="hyaE"
                     /locus_tag="OQP62_003225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase-1 operon protein HyaE"
                     /protein_id="HCS1722699.1"
                     /translation="MANDTPFSALWQRLLTRGWQPVEASTVDDWIKRIGDGVILLSSD
                     PRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGE
                     LRGALSGIHPWAELLTLMRSMVDTPAAQETAQ"
     gene            complement(4424..5020)
                     /locus_tag="OQP62_003226"
     CDS             complement(4424..5020)
                     /locus_tag="OQP62_003226"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 1 maturation protease"
                     /protein_id="HCS1722700.1"
                     /translation="MNAQRVVVMGLGNLLWADEGFGIRVAERLYARYHWPEEVEIVDG
                     GTQGLNLLGYVEQASHLLLLDAIDYGLAPGSLRTYAGEKIPAYLSAKKMSLHQNSFSE
                     VLALADIRGHLPCHIALVGLQPALLDDYGGSLSEIARSQLPAAEQAALAQLAAWGIVP
                     QANEVARCLNYKCLSMENYEGVRIRQYQTRLEGKRSGE"
     gene            complement(5017..5748)
                     /gene="hyaC"
                     /locus_tag="OQP62_003227"
     CDS             complement(5017..5748)
                     /gene="hyaC"
                     /locus_tag="OQP62_003227"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase b-type cytochrome subunit"
                     /protein_id="HCS1722701.1"
                     /translation="MTGKLSPRVGEARDTAVSHYVFEAPVRLWHWLTVACMLVLMVTG
                     YFIGRPLPSVSGEATYLFYMGYIRLIHFAAAMIFIVLLLGRIYWACVGNRYSRELFIV
                     PVWRRSWWQGAFSVVRWYLFLEKKPGSDIGHNPIAQAAMFGYFLLSVFMILTGFALFG
                     EHSQYAIFAPFRYVVEFFYWTGGNSIDIHSWHRLGMWLIAAFIVGHVYLAIREDIMSD
                     DTVISTMINGYRSHKFPKPHDKEPS"
     gene            complement(5767..7560)
                     /gene="hyaB"
                     /locus_tag="OQP62_003228"
     CDS             complement(5767..7560)
                     /gene="hyaB"
                     /locus_tag="OQP62_003228"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase large subunit"
                     /protein_id="HCS1722702.1"
                     /translation="MSNQYQTQGYTVNDAGRRLIVDPITRIEGHMRCEVNIDEQNVIT
                     NAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIQVPDN
                     ANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLNALKADPRATSQLAQSLSAWPMSSP
                     GYFFDVQNRLKKFVDGGQLGIFRNGYWGHPQYKLSPEANLMGFAHYLEALDFQREIVK
                     IHTIFGGKNPHPNWIVGGMPCAINLDQSGAVGAINMERLNLVQSIITRTADFINNVMV
                     PDALAIGQFNKAWSQIGTGLSDKCVLSYGAFPDIANDFSQQSLLMPGGAVVNGDFKNV
                     MPVDLADPQQIQEFVDHAWYRYPDDRLGRHPFDGITDPWYNPGDVKGSDTHIQQLNEQ
                     ERYSWIKAPRWRGHAMEVGPLARTLIAYHKGDAATIESVDRMMSALKLPLSGIQSTLG
                     RILCRAHEAQWAVGKLQYFFDRLMTNLKNGDLATANTEKWEPASWPQHCRGIGFTEAP
                     RGALGHWASIRDQKIELYQCVVPTTWNASPRDPKKQIGAYEAALMGTQMAIPDQPLEI
                     LRTLHSFDPCLACSTHVLGDDGSELIAVQVR"
     gene            complement(7557..8675)
                     /locus_tag="OQP62_003229"
                     /pseudo
     CDS             complement(7557..8675)
                     /locus_tag="OQP62_003229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460742.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 1 small subunit"
     gene            9170..>9761
                     /locus_tag="OQP62_003230"
     CDS             9170..>9761
                     /locus_tag="OQP62_003230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722703.1"
                     /translation="MKNNIRFDLSDYLIHFFRDVDLETGSHIYLPEHCGFNNQHHACS
                     IDAKYLLRLSLRSHKIFSSWSYRNGQRTVYGDSPVVCFTDMPIAAYLETGVRRLERNE
                     NIGLYAIVLPKEQMFNYGARPVIYGLDQHNNARCSQGRYGERILDETALPLIEQYRYV
                     TYVPGKIDWTHEREWRWPYRGDIKKFLNHIKEYGIPE"
BASE COUNT         2397 a         2646 c         2634 g         2084 t
ORIGIN      
        1 aacacttttt ttaaacaatt aactcagatc aaaaatggca ggcagttgga ttttcgttat
       61 gattttggat gagaagtggt taactatccg ctataagagg tgatatatcg ctaattatgc
      121 aattaattgc ttaaatatgc gtgatatgtg caaggcggct atttgtcata attatgacgc
      181 acctctaaaa gtaaagatta tgataacgac atgtatcaat gttatgtcgt cctgtcggcg
      241 gggaaacgtc ttcgccaggc gcgtaaaaag ataaaaataa ccggagtcag acggctctga
      301 ccccggttta cctctttatt gttgacgcga ctcaagccac accagcacca gcgtcgacag
      361 tgagcacatc agcagaatgc cgacaaacca cagtaaatac cacatcgctc tcgctcccta
      421 ataaagttca tgatcgttgc ggcggagggt ctccaggttg atacgcccca acattttgta
      481 atagctccac agcgtataga gcagtacgat tggcagaaaa atcagcacaa tcaccagcat
      541 gatttcgagc gtcatctggc tggaggtgct gtcccacacc gtcaggctgg agagaggact
      601 aacactcgac ggcatcacaa aaggaaatag cgttatgccg gcggtaaaga tgacgcaggc
      661 ctgggtcagg gaagcgaaca gaaatccacg aatagtctga ccgcgaaggc aggcatagaa
      721 agccagaatc ggcaggatca taccgagcaa cgggatgatg agcagtagcg gcgagcgtat
      781 aaagtggttc atccatgcgc cagggagtat cgccacgcct tttaagagcg gattggaagg
      841 gccgttggca tcctgcgtga gtaagacaaa gccatcaacg ccggcccaca gccagtaacc
      901 ggccagcagg aagcagatca cgatcagcag cgcgctgtgg cgggtggccg acagagcccg
      961 ttgacgaata acgccctccg ttttcaactg taaccagacg cctccttgca taatcaccaa
     1021 cgacagactc aataatccac acagtagggc aaagggcgag agtaactgcc agaaggtgcc
     1081 aaaatagtca acatgaagct gcggcgtgaa ggcaaacggc acgcctaaaa acaggttgcc
     1141 gaacgcgatg ccgaatacaa cggggggcac caggctgccg ataaccagac cggtatccca
     1201 cagcgcgcgc cagcgggcat tggcgatttt accccgataa tcaaaggcca gcgggcgaag
     1261 gaagagggca cacagcacca ggatcatcgc cacataaaaa ccggaaaacg cggcggcata
     1321 gacccgtggc caggcggcga ataatgcccc gcccgcgaga atcaaccata cctggtttcc
     1381 ttcccagtgg gcgccgacgc tattgatcaa tacccggcgt tcgtcatcgt tgcgcgctat
     1441 cagcgggagc aggcaaccga cacccatatc aaacccgtca gttaccataa atgccactag
     1501 gatgacgccg atcagcagcc accaaatgaa ccgcaacgtt tcataatcca acatgattgt
     1561 ctcctttatc cctgttgttg cgcttgttgt tgatgttgca tggcgctcgg cccaagacgc
     1621 gcgtacttct gcatcagata gacttccgcg attaaaaaca gggtgtaaag tccgaggata
     1681 agccccattg agaaggccaa ctggcccggc gtcagcgcgg agtgagcgta ccaggtcggc
     1741 agaatgtcct gaatcgccca gggctgacgg ccaaactccg tcataaacca accggcttca
     1801 atggcaatcc acggtaacgg caggctccac agcgtcatac gcaataccca gcgatgctgg
     1861 tcgatacgca ttcgcagcgt ctgtatcaac gcaatcaaca tcaccactaa cagcagcgaa
     1921 ccgcagccga ccataatacg gaaactccag aacaccggcg ccacctgagg aatagcgcca
     1981 cgctgggccg cacgatactg ctccggcgtc acatggttca tatccggggc atatttcgcc
     2041 agcagaatgc cgtaccccag atcgccctca acggcgtgaa acgcattcag tacctgcggc
     2101 gagcgattgc cttgcgctat ctcctgcatg agtagccagg cctcccggcc acgcttcagg
     2161 cgcggcagag cgtcgtccat caggtttttt aaccccggaa ccggcgtatc cagcgaatgg
     2221 gtggccagaa tacccagcag agcagggatc ttcacggcaa atgcattacg ctcctgttcc
     2281 tgctgcggcc aggcaatcag atgaaacggc gcgggcgcgg gttcggtttg ccattcgcct
     2341 tccatcgccg ccagtttcac cggctgaatt tgggcgacct cgtaggccga actgtcgccc
     2401 agttgcaagg ttcccagaat ggccagggtg ccgaatactg agccgatagc aaacgagcgc
     2461 aaggccacct cacgctcgcg gccacgtagc agatacaagg cgctgataga cataataaac
     2521 atggcgccgg tgacataacc ggacatgacg gtatggacga atttcacctg gctcaccggg
     2581 ttaaagacca gatcgctgaa gctgctcatt tccatccgta acgtatcgat gttgaaatga
     2641 gcgccggtag gatactgcat ccagccattg gcattcagaa tccataatgc tgaaatattg
     2701 gagccgaagg ccaccagcca ggtgaccagc aggtgttggt atttattcag ccgctgccag
     2761 ccgaaaaaga acaggccgac aaaagtggat tcgagaaaga aggccagtaa cgcttccatc
     2821 gccagcggcg cgccgaagat atcgcccaca tagttggaat agagcgacca gttagtcccg
     2881 aactgaaact ccatggtcag gccgatagcc acaccgagag caaaattgat cccgaagagc
     2941 ttgccccaga aacgcgtcat atcgcggtag acggttttcc ccgtcaccac atagatcgtc
     3001 tccatgacgg ccagcaaaaa aatcagccca agcgtaagag gaacaaataa aaagtgatac
     3061 agcgcggtca gcgcaaactg ccagcgcgat aagtcaatga catcccacat gctaactcct
     3121 gtaggcagaa agagagtaaa aagctaatca ataccggaca ccggtgacgt tcctgttgag
     3181 agcgctagcg cgtctccagc catcggcaga cttcatccag gcgctggcgc gaatcggcca
     3241 gatcttccgg ggccgccagt accagctccg gcaaaggaca aatctcatag ctatcgagca
     3301 acggcccttt aagggcgtcc agacagcgca catgccagag atggcgcaat gctgtggcgt
     3361 tgatttggct ttcgccatac ccggagatgc gaatctggat gttcccgtgt ccgcataaac
     3421 gcgccagaaa aagacgatcg gcctcgctga gcggcagttg ggtcaaattg atgctgtgag
     3481 gttgcaacgc cggatcgcgt acgtgcgcca ataactcatg ggccagcggc agtccattca
     3541 tcaggccagc gacaggcgga ggcagcagag agtcgtcagg cagcgtatcg gcagtcgccg
     3601 cttgccacaa tgtcaggggc gcgctacccg cttccagacg atccgtcagc agacgtcggt
     3661 tatgcagatg gcgtacccgc cacaggccgc agaagatggt ctcctggatc tcgctttcac
     3721 tcccgtccgg atgctgaatg cgtaccgaga cttcgccttc gcccaatagc gtattgagga
     3781 atgagagatc atcggcattc aggggagata actcccatcc cagcacgtcg ccgacttccg
     3841 ggatgcgccg ggcaagctga cctcgcagat cggtcaacaa tgccatcacc gccgggctgt
     3901 gagcgcagcg ttccagcgcc gccatacttg ggtcgccatt gacctgacag gtgagcggta
     3961 ggggattcat cgagaaactg gcgtcatcag gctgcgtgcc tggccccagc agatgaaaaa
     4021 aggcgttgct cattgtgctg tctcctgcgc tgcgggagtg tcaaccatcg aacgcatcag
     4081 cgtgagcagt tcagcccagg gatgaatgcc gctgagcgcg ccgcgtagct cgccgtctgt
     4141 aaaaaccaac gtcgccggaa accgacgtac attaaagcga tcgccgatag cttcgctttg
     4201 ttcaaggtcg gccaccgcca cctgccagtc aaactgcggg aactcacgca ggagttcggc
     4261 aatcatcacc gggttatcgc tgacttccgg cgtacgccgc ggatcgctac ttaacaggat
     4321 gacgccatct ccaatccgtt tgatccagtc gtctaccgtg gaagcctcta ccggttgcca
     4381 tccacgggtt aacaggcgtt gccatagcgc agagaacggg gtgtcattcg ccacttcttt
     4441 tgccctccag acgtgtctga tactgacgta tgcgcactcc ctcataattt tccatcgaca
     4501 ggcatttata gttcaggcag cgtgcgacct catttgcctg cggtacgatc ccccaggcgg
     4561 ccagttgcgc cagggcggcc tgttctgccg ccggtagctg gctgcgagct atttcgctca
     4621 ggctaccgcc gtagtcgtcc agtagcgccg gttgcaggcc gaccagcgca atgtgacagg
     4681 gcagatgccc gcggatgtcg gccagcgcca gaacttcgga aaaactgttt tgatgcaggc
     4741 tcattttttt ggcgctgaga tacgcgggga ttttctcgcc ggcataggtt cgcaggctgc
     4801 ccggcgccag gccgtaatcg atcgcgtcaa ggagcaggag atggctggct tgctcaacat
     4861 aacctaacag gtttagccct tgcgtaccgc cgtccacaat ttctacctct tcaggccagt
     4921 gatatcgggc atacaaacgc tccgcgaccc ggataccgaa tccttcatcg gcccacagca
     4981 ggtttcctaa tcccatcacc actacacgtt gcgcattcat gagggctcct tgtcgtgcgg
     5041 tttggggaat ttgtggctgc gatagccatt gatcatggtg gagatcaccg tatcgtcgga
     5101 cataatgtct tcccggatag cgaggtaaac gtgcccgacg atgaaggcgg cgatcagcca
     5161 catgcccagt cggtgccagc tgtgaatatc gatggagttg ccgccggtcc agtagaaaaa
     5221 ttcaaccaca tagcggaacg gcgcaaagat ggcatactgg ctatgctcgc caaacagagc
     5281 gaaaccggtg aggatcataa ataccgataa caggaaatag ccgaacatcg cggcctgcgc
     5341 gataggatta tgtccgatgt cgctccccgg ttttttctcc agaaacagat accagcggac
     5401 cacggagaaa gcgccttgcc accaactgcg acgccagacc gggacgataa acagctctcg
     5461 cgaatagcgg ttgccgacac aggcccaata aattcgcccc agcagtaaca cgataaagat
     5521 catcgcggcg gcaaagtgga tcagccggat atagcccatg taaaacagat aggtcgcctc
     5581 gccactcacc gacggcagcg gtcggccaat gaagtagcct gttaccatca gtaccaacat
     5641 gcaggccacc gttagccagt gccacaggcg taccggcgct tcaaacacat agtggctgac
     5701 ggcagtatca cgcgcctccc cgacgcgtgg agatagcttt ccagtcatcg ttcttttcct
     5761 taacgcttag cgtacctgga cggcaatcag ttcgctgccg tcgtcgccga gcacgtgggt
     5821 tgaacaggcg aggcaggggt cgaagctgtg cagcgtcctc aggatttcta acggttggtc
     5881 gggaatcgcc atttgcgttc ccatcaatgc cgcttcatag gcgccgatct gttttttagg
     5941 atcgcgtggg ctggcgttcc aggtggtggg gactacgcac tgatagagtt caatcttctg
     6001 atcgcggatt gacgcccagt gtcccaacgc tccacgaggc gcttcggtaa aaccgatgcc
     6061 gcggcagtgc tgcggccaac tggccggttc ccatttctcg gtattggcgg tggccaggtc
     6121 gccgtttttc aggttggtca taagcctgtc gaaaaaatac tgcagcttac cgacggccca
     6181 ttgcgcttcg tgcgcgcggc ataaaatacg gccaagcgta gactggatac cggagagcgg
     6241 cagtttaagg gcagacatca tgcgatctac cgactctatg gtggcggcat cccctttgtg
     6301 atacgcgata agcgttcggg caagcgggcc gacttccatg gcatgacccc gccagcgcgg
     6361 cgctttaatc caggagtagc gttcctgctc gttgagctgc tggatatgcg tatcgctgcc
     6421 tttgacatca cccgggttgt accagggatc ggtaatgccg tcaaaaggat gacggcccag
     6481 ccgatcgtcc ggatagcggt accaggcatg atccacaaac tcctgtatct gctgcggatc
     6541 ggccaaatct accggcatga catttttaaa atcgccattg accaccgcgc cgcccggcat
     6601 taacaggctt tgctggctga agtcgttggc aatgtccgga aatgcgccgt agctcagcac
     6661 gcatttatcc gacagaccgg tgccaatttg actccatgct ttattgaact ggccgatagc
     6721 cagcgcgtcc ggaaccatca cgttgttaat gaagtcggcg gtgcgggtga tgatcgactg
     6781 caccaggttg aggcgctcca tattgatagc cccgaccgcg ccgctttgat cgagattgat
     6841 cgcgcacggc atcccgccga cgatccagtt aggatggggg ttcttaccgc caaatatggt
     6901 atggattttg acgatctcgc gctggaagtc gagggcttca agatagtggg caaaacccat
     6961 cagattagcc tctggcgaca gtttgtactg tggatgtccc caatagccgt tacggaatat
     7021 cccaagctgg ccgccatcga caaatttctt caatcgattt tgtacgtcaa agaagtagcc
     7081 cggcgatgac atcggccagg cggaaaggct ttgcgccagc tgcgaggtgg cgcgtggatc
     7141 ggctttcagc gcattcagaa catcaatcca gtccatgccg gctaactgat aaaaatggac
     7201 caaatgatcg tggcaccaca acgtagccag catgatgtta cgtataatat tggcgttatc
     7261 cggtacctgg ataccaatcg catcttcgat agcgtacacc gacgccagag catgtacccc
     7321 ggtacagaca ccacaaatac gttcaacaaa cgcccaggcg tcacgtgggt cacggccttg
     7381 cagaatgatc tccagcccgc ggaacatcgt gccgcaggaa acggcattgg taatgacgtt
     7441 ttgctcatca atgttcactt cgcagcgcat atgcccttcg atgcgggtaa tcgggtccac
     7501 gatcagacga cggccggcgt cgttaacggt ataaccctgg gtttgatact ggttactcat
     7561 gcctgtttat cctcattgtc cggctgttgt tcggcttgcg ctaactgttg tttgtggcgt
     7621 ttacgttggt tgagcgcgct ggcgacagcg tgaccgccaa cgcccgcagc gaccacgccc
     7681 agcgcggtca gccccaccgt atcggcggtt gaatgggtac ccatctgggg aatatccacc
     7741 acgcggctat aaaacgagcc gcgatcccag aaaccatttt ctgaacatcc cagacatccg
     7801 tgaccggact ggataggaaa ggagacgccg tcattccagc gtgtggagga gcaggcgtta
     7861 taggtggttg gccctttaca gcccatcttg tacaggcagt atcccttgcg ggcggcgtca
     7921 tcatcccagc tctcgacaaa ttcaccggca tcaaaatggg cgcgacggta gcatttatcg
     7981 tggatacgct gaccatagaa catcagtgga cggcccatgc gatcgagttc cggcagacga
     8041 tcaaacgtca ccatataggt gataatggcg ctcatgacat ccgggattgg tggacatcca
     8101 gggactttca cgatcggctt gtcggtgatc actttatcga taggcgttgc ctgggtcgga
     8161 ttggggcggg cggcctagac gcaaccccag gaggcgcagt ttccccaggc gataatagcg
     8221 ctggcgcccg cggcggcttt cttcagtttt tcaataaacg ggcggccgcc gctgatacag
     8281 aacattcctt gctctcctaa cggcggattg ccttccaccg ccagaatgta tttcccggcg
     8341 tagcgagtgg taatatcgtc aaagacttct tcggcctgtg cgccggcggc ggccatcagg
     8401 gtgtcgtcat aatcgaggga aatcagcgag aggatcacat ctttggctag cgggtgcgag
     8461 gaacggataa aggattcggt acagcaggtg cattccagtc catgaatcca gaccaccgga
     8521 atccgcggtt tattctccag cgcccaggcg atctttggcg tcattccggc gcccagtccc
     8581 agcgatgtgg cggcaaggct acagaatttg agaaagctgc gtcgggtcac tcccttacga
     8641 cgcatggctt gataaaaggt ctcctcgtta ttcataacgc gtattttttc tcctttttgc
     8701 accacgctcc gccaggggca taaggcgctt ttgcgggtcc gttgacgttc cgccagcaag
     8761 gtaaatcatt gtgttacgcg cgagcgcgga aacgagcccg attcactttg caccgacgta
     8821 taccgccaga aataatgtga aaaaagcgta tcggattaac gataagaaac aatgtgaagt
     8881 gtgtgggtat agcttatagc ggtatattta tacccattat cggtttttcg gcgaaagggc
     8941 cgtggcgggg aagcgcggtt gagtttgttc cgggatgagg ttttcagtga gcaacctcaa
     9001 gtggatttag cctggtctcg ccatttcagg gatacgtaag ttgatgcaaa aggagggagg
     9061 atttgatgtc atcgttaaaa gaagcatact tcgtgatgat ttttatataa aatgatggtg
     9121 ctggttttaa aggaatgcaa aaaagagact gtttgaaaga gggcgtccca tgaaaaataa
     9181 catcagattt gacttatccg attatttgat tcattttttt cgggacgttg atttagagac
     9241 cggtagccat atttatttac ctgaacactg tggttttaat aatcagcacc atgcatgttc
     9301 cattgatgct aaatatttac ttagattatc tttacgcagt cataaaattt tctcgtcctg
     9361 gtcataccga aatggacaac gaaccgtata tggtgactcc ccggtggtat gctttacaga
     9421 tatgccgatt gcagcttatt tagaaactgg tgttcgccga ttagaacgaa atgaaaatat
     9481 tggtttatat gcaatcgttt tacctaaaga gcaaatgttt aattatgggg caaggccagt
     9541 catatatggg ttggatcagc ataacaatgc tcgatgctcg caaggcagat atggggaacg
     9601 tattcttgat gaaacggctc ttcctctgat tgaacaatat agatatgtta cttatgttcc
     9661 aggtaagatt gactggacac atgaacgcga atggcgatgg ccatatcgtg gcgatattaa
     9721 aaaattcctt aatcatatta aagagtatgg tattccggaa a
//
LOCUS       DAJVSD010000171         9732 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.171, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000171 DAJVSD010000000
VERSION     DAJVSD010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9732
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.171"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            45..353
                     /locus_tag="OQP62_003231"
     CDS             45..353
                     /locus_tag="OQP62_003231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001534897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2170 family protein"
                     /protein_id="HCS1722704.1"
                     /translation="MNDYGDLPLTVLFTSQQIVIETYICPVNTIRDTAEFNLFLLRNQ
                     KVLPLSSVGIALVKQEEYYVAFGALSLNSSLADVTLEITTLVENALDIAEITQVYSQE
                     "
     gene            368..1066
                     /locus_tag="OQP62_003232"
                     /pseudo
     CDS             368..1066
                     /locus_tag="OQP62_003232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463232.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
     gene            1290..1973
                     /locus_tag="OQP62_003233"
     CDS             1290..1973
                     /locus_tag="OQP62_003233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463234.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfK family protein"
                     /protein_id="HCS1722705.1"
                     /translation="MARDRGSPMMQFFQRLLGKTSTPAPIRGPLGLHLNAGFTLDTLA
                     FRLLESSLLVALPGEKYTVAAASRIDLGGGSQIFRYYTSGDEFLQINTTGGTDVDDID
                     DIKLFVYEESFGINEERHWRSAIAPAAIGPMTLNWQERRWQRFFNHEEPGNIEPVYML
                     EKVENQQAEKWDVHNFTMGFQRQVTDDAWEYLLLNGEESFNERGEPEWVFSRALGVDI
                     PLTSLTVIG"
     gene            1991..2389
                     /locus_tag="OQP62_003234"
     CDS             1991..2389
                     /locus_tag="OQP62_003234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF350 domain-containing protein"
                     /protein_id="HCS1722706.1"
                     /translation="MHILDALLAFCAYFFIGAAMIIVFLFIYSKITPHNEWQLIKNNN
                     TAASLAFSGTLLGYVIPLSSAAINSVSIPDYFAWGGIALVIQLLIYGCVRLYMPTLSE
                     KIIHHNVAAGLFMGTAALAGGIFNAACMTW"
     gene            2399..3037
                     /locus_tag="OQP62_003235"
     CDS             2399..3037
                     /locus_tag="OQP62_003235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1190 domain-containing protein"
                     /protein_id="HCS1722707.1"
                     /translation="MAKKRKSRSTSGVGHSAIRRIAEPVNPFERQRNRYTPKYLTLAI
                     MGGAAFFLLKGYGDGSNSDNDGDGTFYATVNDCIDDGNSASVCADGWNNAKTEFYANV
                     PKQLTQESCQSQFGDCYFDITERSWVPVLSGFLLSRAIRQNRDEQYIYSSGGSSYVSR
                     PVWRTTSGDYAWRSGTGKSDTVTSPGYIIRKASTVSRGGYGRSSSARGHWGG"
     gene            3040..4203
                     /locus_tag="OQP62_003236"
     CDS             3040..4203
                     /locus_tag="OQP62_003236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HCS1722708.1"
                     /translation="MLRHNVPVRRDLDKIACDHGFDFHVIDNEIYWDESRAYRFTLRQ
                     IEEQIEKPTAELHQMCLEVVERAVRDEQIMQQLAIPPLYWDVIAESWRSRDPSLYGRM
                     DFVWCGKDPVKLLEYNADTPTSLYESSYFQWLWLEDARRSGAIPRDADQYNAIQERLI
                     ARFSELYSREPLYFCCCEDTDEDRTTVLYLQDCAQQAGQETRFIYIEELGLGVGGVLT
                     DLDDNVIRRAFKLYPLEWMMRDDNGPLLRKRREQWIEPLWKSILSNKGLLPLLWRFFP
                     GHPNLLPAWFEGEKSLAAPGESSVRKPIYSREGGNVTIFDERQNVIDHADGDYADEPM
                     IYQAFQPLPRFGDSYTLIGSWIIDDEASGMGIREDNTLITKDTSRFVPHYIAG"
     gene            4288..5910
                     /locus_tag="OQP62_003237"
     CDS             4288..5910
                     /locus_tag="OQP62_003237"
                     /EC_number="1.3.8.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463238.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isovaleryl-CoA dehydrogenase"
                     /protein_id="HCS1722709.1"
                     /translation="MSWQTHTVFNQPAPLNNSNLFLSDGALCEAVSREGAGWDSDLLA
                     SIGQQLGTAESLELGRLANAHPPELLRYDPQGQRLDDVRFHPAWHLLMQGLCANRVHY
                     LAWEEEARAGSFVARAARFVLHAQVEAGTLCPVTMTFAATPLLLQMLPATFHDWLAPL
                     RSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTHAERLADDSYRLVGHKWFFS
                     VPQSDAHLVLAQAKGGLSCFFVPRFLPDGQRNSVRLERLKDKLGNRSNASAEVEFQDT
                     VGWRLGEEGEGIRHILKMGGMTRLDCALGSHGLMRRAFSVAIYHAHQRQAFGKPLIEQ
                     PLMRQTLSRMALCLEGQTALLFRLARAWEQRREAKEALWARLFTPAAKFAICKQGIPF
                     VAEAMEVLGGMGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLTKQHGVYDVLS
                     EAFAEVKGQDRHYDRAVRQLQQRLRKPDEAMGREITQQLFLLGCGAEMLRHASPPLAQ
                     AWCQMMLDTRGEMPLPAQVQNDLLLRATGGLR"
     gene            complement(5955..6230)
                     /locus_tag="OQP62_003238"
     CDS             complement(5955..6230)
                     /locus_tag="OQP62_003238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1722710.1"
                     /translation="MKQELALSSLLLSAGLVSTTAQSAEFASADCVTGLNEIGLISVS
                     NVAGNPQDVERIIALKADEQGASWYRIIQMYEEQQSNNWRVQAILYA"
     gene            complement(6361..6690)
                     /gene="bsmA"
                     /locus_tag="OQP62_003239"
     CDS             complement(6361..6690)
                     /gene="bsmA"
                     /locus_tag="OQP62_003239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm peroxide resistance protein BsmA"
                     /protein_id="HCS1722711.1"
                     /translation="MIIRKRDRVMRRFAPLIAALLLSACSMLQGTPQPAPPVADHPQE
                     IRRDQTQGLQRMGTVSALVRGSPDDAIDEIRAKAAAAKADYYVILMVDETVVTGQWYS
                     QAILYRQ"
     gene            6874..7623
                     /gene="yjfP"
                     /locus_tag="OQP62_003240"
     CDS             6874..7623
                     /gene="yjfP"
                     /locus_tag="OQP62_003240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HCS1722712.1"
                     /translation="MIAIETRQLAGGVVLHAFPEGKRAVPLPCVVFYHGFTSSSLVYS
                     YFAVALAQAGFRVVMPDAPEHGARFGGDSQGRIHRFWQILHQNMQEFTTLRAAIQAEN
                     WLLDGRLAVGGASMGGMTALGIMTRHREVKCGASLMGSGYFTGLARTLFPPLSPQNPA
                     QQAEFDNIIAPLREWEVTHQLERLADRPLLLWHGQEDDVVPAIETFRLQQALAGAKLD
                     KHVTCLWAAGVRHRITPEALSATVAFFRQHL"
     gene            complement(7620..8375)
                     /gene="ulaR"
                     /locus_tag="OQP62_003241"
     CDS             complement(7620..8375)
                     /gene="ulaR"
                     /locus_tag="OQP62_003241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator UlaR"
                     /protein_id="HCS1722713.1"
                     /translation="MTEAQRHQILLDMLAQLGFVTVENVIERLGISPATARRDINKLD
                     ESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCG
                     STAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN
                     SLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVALVDSSKIGERAGMLF
                     SRADQIAMLITGKNANPQVLQQLEAQGVSILRV"
     gene            complement(8480..9544)
                     /gene="ulaG"
                     /locus_tag="OQP62_003242"
     CDS             complement(8480..9544)
                     /gene="ulaG"
                     /locus_tag="OQP62_003242"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003856017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HCS1722714.1"
                     /translation="MSKVQSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLG
                     CTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKTGHQMQRMAGVKKLQPNLRTTPFVL
                     DPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPQTCVDLWVGWGVPKER
                     CIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDVRAVNYLFKTPG
                     GNLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADILRMAESLNTKV
                     VIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHY
                     PRGFDDCFTIEPDLPFKSFL"
BASE COUNT         2266 a         2406 c         2682 g         2378 t
ORIGIN      
        1 tagatattga tatagaaaat aatgaatctt cattaataat aaaaatgaat gattatggcg
       61 atttaccact gacggtttta tttacctcgc aacaaatagt tatcgagact tatatctgtc
      121 cggtaaatac gattagagat accgcggaat ttaatctttt cttgctgaga aatcagaagg
      181 ttttaccgct gtcttcggtc ggtattgccc tggtaaaaca ggaggaatat tatgtcgctt
      241 ttggcgcgtt gtcgttaaat tcgtcgcttg ccgacgtgac gctggaaatc accacgcttg
      301 tagaaaatgc gttggatatc gctgaaataa cacaagtcta ttcacaggaa taatacaggc
      361 ggcttacatg ggaattttaa aaagtttgtt cacgttaggt aaatcattcg ttgctcaggc
      421 agaagaagcc attgatgaag cacagggtgt acgtatgctg gagcagcata ttcgcgacgc
      481 aaaagccgag ctggataaag cgggtaaatc cagagtggat ttattggcgc gggtgaagct
      541 aagccatgac aagctgaatg atttacgtgc gcgtaaagtc agccttgaaa cgcgggcgtt
      601 ggcggcaatg agtaagaatg tcgacgccgc tttactcaac gaagtggcgg aagaaatagc
      661 ccgtctggaa aatgccattc ttgccgaaga acaggtgctg actaatctgg aagcctctcg
      721 tgatgcggtg gagaaggccg taacggcgac aggccagcgg attgcgcagt ttgagcagca
      781 acttgaagtg gttaaggcga cagaagccat gcagcgcgcg cagcaggcgg tgacgacttc
      841 gaccgtcgga gccgcgtcga atgtgtctac ggcggcggag ccgcttaaac gtttacaaac
      901 gcgtcaggct gaacgctagg cacggctgga tgccgccgcg cagctggaaa aagtcgccga
      961 tggacgcgac ctggacgaaa aactggcgca ggcgggtatt ggcgcaacca ataaaagcaa
     1021 tgctcaggat gtgttggcgc gtttacagcg tcaacaaggc gaataatgct ctttacgtgg
     1081 atggtcaaaa cctgccagcg tcatttgtcc agactgacct ggcccgcttt gctgggcctg
     1141 tttatcgggc agtatctgct ttgctatctg tagcgcgaaa gcgcgctacc gtgctgagct
     1201 tcgtcgcttt catacgagac ggcacatgaa tgcgcgatct caaatgacat tatgcccaac
     1261 gacaatcgca ttctgtctga agaggtcgca tggcaagaga tagaggttcc cctatgatgc
     1321 aattttttca gcgtttgctc ggtaaaacaa gcacgccagc gccgattcgc ggaccattag
     1381 gattacatct taacgccggt ttcacgctgg atacgctggc attccggcta ctagagtcgt
     1441 cgttgctggt ggcgctacca ggtgaaaaat acactgtcgc ggcagcgagt cgcatagatt
     1501 taggcggcgg cagtcagatt tttcgctact acacctctgg cgatgagttt ctacaaatta
     1561 acaccactgg cggcacggat gttgacgaca ttgatgacat caaacttttt gtatatgagg
     1621 aaagtttcgg tattaacgag gaacgtcact ggcgttcagc cattgcgcca gcggcaatag
     1681 ggccgatgac gctcaactgg caagaacggc gctggcagcg cttttttaac catgaagagc
     1741 cgggcaatat tgaacctgtc tacatgctgg aaaaggttga aaatcagcag gcagagaaat
     1801 gggacgttca caattttacg atgggtttcc agcgccaggt gacggacgac gcctgggagt
     1861 atcttctatt gaacggggaa gaatcattta acgagcgcgg tgagcctgaa tgggtgtttt
     1921 cacgcgccct cggcgtggat atccctctca cttcactaac ggttattggt taagcacata
     1981 cagggaaatt atgcatatac tggacgcatt actggctttc tgcgcctatt tttttattgg
     2041 cgcggcaatg atcattgtat ttctttttat ttactcaaag ataacgccgc ataatgaatg
     2101 gcagttgata aaaaataaca atactgcggc atcgctggcc tttagtggta cgttgctggg
     2161 ctatgtcatc cccttatcca gcgcggcgat aaactcagtc agcatcccgg actattttgc
     2221 ctggggcggc attgcgctgg tgattcagct gctgatttat ggttgcgtaa ggttatacat
     2281 gcctacgctg agcgaaaaaa ttattcatca caacgtggcg gcggggctat ttatgggaac
     2341 cgcagcgctg gctggcggta tttttaacgc tgcctgtatg acatggtaac ggaagatcat
     2401 ggcaaaaaaa cgaaaatcca gaagcacatc cggcgtaggc cattcggcaa taagacggat
     2461 agccgaaccg gtcaatccct ttgagcggca acgaaatcgc tacacgccaa aatacctgac
     2521 gctggcgatt atgggtggag cggccttttt tctcctgaaa gggtacggtg acggcagcaa
     2581 tagtgacaac gacggcgatg ggacgtttta cgccacggtg aacgactgta ttgacgatgg
     2641 caatagcgcc agcgtttgcg ctgacggctg gaataatgcg aaaacagaat tttacgctaa
     2701 tgtgcctaag caattgacgc aggagagctg tcagtcgcag tttggcgatt gctactttga
     2761 tatcaccgag cggagctggg ttccggtatt aagcggcttt ttactcagcc gcgcgattcg
     2821 tcagaaccgt gatgaacaat acatctatag cagcggcggt tcatcttacg tctcccgtcc
     2881 cgtctggcgc accacatccg gcgattatgc gtggcgcagc ggcacaggga aaagcgatac
     2941 cgtgaccagc cctggttata tcatacggaa agcgtccacc gtctcccgcg gcggctatgg
     3001 ccgttcttcc agcgcccgcg ggcactgggg aggctaacca tgctacgaca taacgtaccg
     3061 gtacgccggg atctggataa gatcgcatgc gatcacggtt ttgactttca tgttatcgat
     3121 aacgaaattt actgggatga aagccgggcc taccgtttta cattacggca aattgaagaa
     3181 cagatcgaaa aaccgaccgc agagcttcat cagatgtgtc tggaggttgt cgagcgggcc
     3241 gtccgggatg agcagatcat gcagcagctg gcgatcccgc cattgtactg ggatgtcatc
     3301 gccgaaagtt ggcgcagccg cgatccttcg ctttacgggc ggatggattt cgtctggtgc
     3361 ggcaaagatc cggttaaatt gctggaatac aacgcggata cgccgacatc gctctatgag
     3421 tcctcctact ttcaatggct atggctggag gatgctcgtc gtagcggcgc catcccgcgt
     3481 gatgccgatc aatacaacgc gatacaggag cggctgatcg cccgcttcag cgagctgtac
     3541 agtcgggaac cgctctactt ttgctgttgt gaagataccg acgaagatcg tacgacggtg
     3601 ctgtaccttc aggattgcgc gcagcaggcg ggccaggaaa cgcgatttat ctatattgaa
     3661 gaactggggc ttggcgtagg cggcgtgctg accgatctgg acgataacgt gattcgccgc
     3721 gcctttaagc tctacccgct ggaatggatg atgcgcgatg acaacggccc gctattgcga
     3781 aaacgtcgtg agcaatggat tgagccattg tggaaaagta ttctgagtaa caaagggctg
     3841 ttgccgttat tgtggcgctt tttccctggc catccgaatc ttctgccggc ctggtttgag
     3901 ggcgaaaaat cgctcgcagc gccaggtgaa agtagcgtac ggaagccgat ttattcacgt
     3961 gaaggcggca acgtcacgat ttttgacgag cggcaaaatg ttatcgatca tgccgatggc
     4021 gactacgctg acgagccgat gatttaccag gcgtttcagc ctttgccgcg ctttggcgat
     4081 agctatacgc tgattggcag ttggatcatt gacgatgaag cctccggaat ggggattcgc
     4141 gaggacaata cgctaattac caaagacact tcccgtttcg tcccacatta tattgccggt
     4201 taatcatact tttgtgatct tgctccggcg tcaatggcgc agtcatgacc atacttgact
     4261 tcagcgccat tgaaggaggg agacaccatg tcctggcaaa cacataccgt ctttaatcaa
     4321 cctgctccgc tcaataacag taacttattc ctgtctgatg gcgcgctgtg tgaagcggtt
     4381 tcccgggaag gcgcgggatg ggatagcgat cttctcgcca gcattggcca acaactggga
     4441 acggcggaat cactggaact ggggcgtctg gcgaacgcgc atcctcctga gttgctgcgt
     4501 tacgatcccc agggacagcg cctggatgac gttcgctttc atcccgcctg gcacctgttg
     4561 atgcaggggc tttgcgctaa tagggtacat tacctggcct gggaggaaga ggcaagggcg
     4621 ggaagttttg tcgcccgggc ggcgcgtttt gtattacatg ctcaggtaga agcgggaaca
     4681 ctctgtcctg tcacgatgac ctttgccgcg acgccgttgc tattgcagat gcttcccgcc
     4741 actttccatg actggctggc gccgctgcgc agcgatcgct acgattcgca tttgctgccg
     4801 ggcgggcaaa aacggggcct gctcatcggc atgggaatga cggaaaagca gggcggatct
     4861 gacgtactca gtaatacgac ccacgcggag cggctggcgg atgattcata tcggctggtg
     4921 ggacataaat ggtttttctc tgtgccgcaa agtgatgcgc acctcgtgct ggcgcaggca
     4981 aaaggaggac tatcctgttt ctttgtgccg cgtttcctgc cagacgggca acggaactct
     5041 gttcgtcttg agcgcctgaa agataaactc ggtaatcgat ctaatgccag cgccgaggtc
     5101 gagtttcagg ataccgtcgg ctggcggctg ggagaagagg gcgaagggat tcggcatatc
     5161 ttaaagatgg gcggtatgac gcgtcttgat tgcgcgctcg ggagtcatgg cttaatgcgg
     5221 cgcgcatttt cagtcgccat ttaccatgct catcagcgtc aggcttttgg taagccgctg
     5281 atcgaacaac cgttgatgcg acaaacctta agtcgtatgg cgctatgcct ggaggggcag
     5341 acggcgcttt tgtttcggct ggcgcgcgcc tgggagcaac gtcgcgaggc gaaagaggca
     5401 ttatgggcgc gattattcac gccagcggcg aaattcgcca tctgtaagca gggaatccct
     5461 tttgtggctg aggcgatgga ggttctcggc gggatggggt attgcgaaga gagcgaactc
     5521 ccgcgcctgt accgtgaaat gccggtgaac agtatctggg aaggttccgg caatatcatg
     5581 tgtctggatg tacttcgggt gctgacaaaa caacacggcg tctatgacgt attgagtgaa
     5641 gcttttgcgg aagtcaaagg tcaggatcgc cattacgacc gcgcggtacg ccagctacag
     5701 caacgtttac gcaaaccgga cgaagcaatg ggcagagaga ttacgcagca gcttttcttg
     5761 ctggggtgcg gagcggaaat gctgcgtcat gcctcgccgc cgctggcgca agcgtggtgt
     5821 cagatgatgc tggatacacg cggcgaaatg ccgctgcctg cccaggtgca aaatgattta
     5881 ctgttaaggg cgaccggggg actgcggtaa cgtttggcct gtagtacatg ccatccggcg
     5941 cgagccacgc ggcatcaggc atagagtatc gcctgtacgc gccagttatt cgactgttgt
     6001 tcttcataca tttgaataat tctgtaccag gacgcaccct gttcatcggc tttgagggcg
     6061 ataatccgct ccacatcctg tgggtttcct gcaacattac tgaccgagat caggccgatt
     6121 tcattcagac ccgttacgca gtcagcactg gcgaattcgg cagactgtgc cgtcgtactc
     6181 accagtccgg cagaaagcag cagtgaggat aaggcaagtt cttgtttcat cgtcagctcc
     6241 ttattacata ccccgcattt aacaggacgc tccatcacgg taaacctgtt tgtttattgt
     6301 gcacaggtaa acgcataggg gcgcaaagca atgtaaaact gactaaaaat caatctactg
     6361 ttattgacga tataaaatgg cttgtgaata ccactgtccg gttacaaccg tttcatcaac
     6421 cattaagata acgtaataat cggctttcgc agcggcggct ttcgctctga tttcatctat
     6481 tgcatcatcc ggggaacccc gaaccagcgc gcttacggtc cccatccgct gtagtccttg
     6541 cgtttgatcg cgacggattt cctgcgggtg atcggcgaca ggcggcgcag gttgcggcgt
     6601 accctgcagc atgctacacg cgcttaataa cagcgctgct atcaatggag caaaccgacg
     6661 cataactcta tctcgtttcc tgataatcat agtgtaatgc cttattgatt tccctttagg
     6721 gggaatgttc ccgaagtgtt acctgtcacg cgattttcga atgaaaacgt tgcgaaagcg
     6781 taacccagtt ctcaaacatt atgaattatt gcgctatcca taaacttgcg ttaagtattt
     6841 ctccgtggca taccggataa aaaggagaga ataatgatag cgattgaaac acgacaatta
     6901 gccggaggcg tcgtactaca tgccttcccg gaagggaaac gcgccgtgcc gcttccctgt
     6961 gtggtgttct atcatggctt cacctcctcc agcctggttt atagttattt tgccgttgcc
     7021 ctggcacagg caggattccg ggtagtcatg ccggatgcgc cggagcatgg cgctcgcttc
     7081 ggcggcgact cacagggacg gatacaccga ttctggcaga ttctgcacca aaacatgcag
     7141 gaatttacga cgttacgtgc ggcgattcag gcggaaaact ggctacttga cgggcggttg
     7201 gcggtgggcg gcgcatccat gggcggtatg acggcgctgg gcattatgac gcgtcaccgt
     7261 gaggtaaaat gcggggccag tttaatgggg tcgggctatt ttaccgggct tgcccggacg
     7321 cttttcccgc cgttatcccc gcagaacccg gcacagcagg cggaattcga caatatcatc
     7381 gcgccgctac gtgaatggga agtcacacat cagttagagc gactggccga caggccgctt
     7441 ctgttgtggc atggtcagga ggatgacgtg gtgcctgcta tcgaaacctt ccggctccag
     7501 caggcactcg ccggggcgaa gctggataag catgtgacct gtttatgggc cgcaggcgtg
     7561 cggcatcgca ttacgccaga agcgttgtcg gcgacggtag cgtttttccg acagcatctt
     7621 taaacgcgga gtatgcttac accctgggct tcaagctgtt gcaaaacctg cggattggca
     7681 tttttgccgg taatcagcat agcgatctga tcggctcggc tgaacagcat tcccgcgcgc
     7741 tcgccaattt tactgctatc gaccagcgcg accagtttcc cgacgacgct gagcattttt
     7801 tgttccgcca tggcggttag catatcggtc ttgtacaggc catccgcagt taagcccttt
     7861 ccgctggtaa acatccagtg gccagcatag agactgtttt cacttccctg cgggctcagg
     7921 gtaatcgact ggcttttgtt gtactgaccc cccatgataa tcacgctgtc atgctcttga
     7981 tcgatcagat aattcgccag cggcagatag ttggtaatga tctgtaccgg cttcccgcac
     8041 atttcgcgcc ccagcaggaa agcggtggag ccgcagttaa tcactacgct ctcacccggg
     8101 tttaccagct gcgacgccgc tttcgcgatg cgtacttttt catcgtggtt ttgcgcctgg
     8161 tgcagattca tcggcgtcca gcggggccgc tgttgggtaa tggcctctgc gccgttgcgc
     8221 acttttttaa gttttccgct ttcgtcgagc ttgttgatgt cgcggcgcgc cgtcgccggg
     8281 gagattccca gacgctcaat cacgttttcg acggtaacaa agcccaactg tgccagcata
     8341 tccagcagta tttgatgtct ttgtgcttca gtcatgagct attccgatac aaattgattt
     8401 gaaaagatga tatttgaaat agcctggaaa tactaaagta aatggaaaaa atgccgggta
     8461 atcccggcat gatatcgact cacaggaagg atttgaatgg tagatcgggt tcaatggtaa
     8521 agcaatcgtc aaaaccacgc ggatagtggt attcgaaatt gtctttatcc aacggccagg
     8581 taaacttgcc gccaacctgc cagataaacg gtttaaaacc atacttcagg cgatctttct
     8641 tcatttccca taacacgcgg atctcctgtg gatcggcctg gaagttcgac cagatatcgt
     8701 gatggaacgg gatcaccact ttggtgttca gcgactccgc catgcgtaga atatccgcgc
     8761 tggtcatttt gtccgtaata ccgcgcgggt tttcgccata ggaaccaagc gcgacatcaa
     8821 tttgatgttc gttgccgtgt ttcgcgtaat agttggaata gtgagaatcg ccgctgtgat
     8881 agagattgcc gcccggcgtt ttaaacagat agttaaccgc gcgtacatcc atgccgtccg
     8941 gcagtacgcc agcggctttc tgatcggcgg gcagggtgat taatgcggtg cggtcaaagg
     9001 catcaagcgc gtgaatttca atatctttca cttttacgac atcgcccggt tttaccacga
     9061 tgcagcgttc tttcggcacg ccccagccaa cccataaatc cacgcaggtc tgcgggccga
     9121 taaacggaac atcatcggcg caattctgca ttacggcagc cgcgacattg acgtcaatgt
     9181 gatcgttatg gtcgtgggtc gccaggacgg cgtcgatctg acggatagcg aaaggatcga
     9241 gaacaaacgg cgtggtgcgc aggttaggct gtaatttttt gacgccagcc atacgctgca
     9301 tctggtgacc ggttttcatc aacggattac cgtggctctg tttaccggta ccgcaccaga
     9361 aatcgacgca tacgttagtg ccgccttcag attttagcca gatcccggta cagcccagcc
     9421 accacatagc gaacgtaccc ggcgcgacct gctcttgttc aatctcttcg ttcagccagc
     9481 ttccccactc cggaaacgtg ctcagaatcc atgattcacg cgtgatgctt tgtactttac
     9541 tcatcgcatt taccttcatg tttgttcaaa atggttcaaa acgtgatttg ttttgattaa
     9601 tcctgacact attttctcaa gaaggcaatg ggctattttt tgactttttg gcaggagaga
     9661 acgcagtcag aagaagattt aatcttgtct ggcgtcatgt gaatgttggc atctttatga
     9721 ttttacttat tt
//
LOCUS       DAJVSD010000172         9714 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.172, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000172 DAJVSD010000000
VERSION     DAJVSD010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9714)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9714)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9714
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.172"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..104
                     /locus_tag="OQP62_003243"
     CDS             <1..104
                     /locus_tag="OQP62_003243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001147134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="effector protein steA"
                     /protein_id="HCS1722715.1"
                     /translation="LKYYTDRANDMPEAKAQRAADIKDRYHNYLDKY"
     gene            387..1232
                     /gene="nhoA"
                     /locus_tag="OQP62_003244"
     CDS             387..1232
                     /gene="nhoA"
                     /locus_tag="OQP62_003244"
                     /EC_number="2.3.1.118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-hydroxyarylamine O-acetyltransferase"
                     /protein_id="HCS1722716.1"
                     /translation="MTSFLHAYFTRLNCQPLGGPTVEALRTLHLAHNCAIPFENLDVL
                     LPREIQLDETALEEKLLYARRGGYCFELNGLFERALRDIGFNVRSLLGRVILSHPASL
                     PPRTHRLLLVDVEDEQWIADVGFGGQTLTAPLRLQAEIAQQTPHGEYRLIQEGSTWIL
                     QFRHHEHWQSMYCFDLGVQQQSDHVMGNFWSAHWPQSHFRHHLLMCRHLPDGGKLTLT
                     NFHFTRYHQGHAVEQVNIPDVPSLYQLLQQQFGLGVNDVKHGFTEAELAAVMAAFDTH
                     PEAGK"
     gene            complement(1268..2161)
                     /locus_tag="OQP62_003245"
     CDS             complement(1268..2161)
                     /locus_tag="OQP62_003245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family isomerase"
                     /protein_id="HCS1722717.1"
                     /translation="MKPQIYHVDAFTSEPFRGNSAGVVLHADTLSDAQMQLIARELRH
                     SETAFLLKSEESDVRIRYFTPTVEVPICGHATVAAHYVRATVLGLGNTTVWQTSLAGR
                     HRVEIHAEHNDYRITLEQGQPSFEPPLVGEIRAAIITALNLTEDDIVPGAPIQVASTG
                     HAKVMILLKPDVDIDALSPNLAALTAISQQIGCNGFFPFQIRPGKNETDGRMFSPAIG
                     IVEDPVTGNANGPMGAWLVHHGLMAHDGKTLQIQGHQGRALGKEGTVDVTVTIRDNQP
                     ENVTISGQAVILFHAEWAITF"
     gene            complement(2257..2895)
                     /gene="narJ"
                     /locus_tag="OQP62_003246"
     CDS             complement(2257..2895)
                     /gene="narJ"
                     /locus_tag="OQP62_003246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001767506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase molybdenum cofactor assembly
                     chaperone"
                     /protein_id="HCS1722718.1"
                     /translation="MQILKAIGLLMEYPDDELWECRDEALALIQHDAPMLANFTRELL
                     YAPLLDKQAEWCEVFDRGRATSLLLFEHVHAESRDRGQAMVDLLSQYETVGLHLNCRE
                     LPDHLPLYLEYLSVLPEAEAREGLQNIAPILALLGGRLKQRGAPWYQLFDALLTLAGS
                     TLTSDSVTKQIVQESRDFSCSSRSPVWFMSGARRSSISPVATRLFVPAANSL"
     gene            complement(2895..4439)
                     /gene="narH"
                     /locus_tag="OQP62_003247"
     CDS             complement(2895..4439)
                     /gene="narH"
                     /locus_tag="OQP62_003247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit beta"
                     /protein_id="HCS1722719.1"
                     /translation="MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTGREGMEYAWFNNV
                     ETKPGIGYPKNWEDQQEWQGGWVRDVNGKIRPRLGGKMGVISKIFANPVIPQIDDYYE
                     PFTFDYQHLHTAPESKHQPTARPRSLIDGKRMDKVIWGPNWEELLGGEFEKRARDRNF
                     DNIQKEMYGQFENTFMMYLPRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRG
                     WRLCISGCPYKKIYFNWKSGKSEKCIFCYPRIESGQPTVCSETCVGRIRYLGVLLYDA
                     DRIEEAASTEHETDLYERQCDVFLNPHDPAVIEEALKQGIPQNVIDAAQRSPVYKMAM
                     DWKLALPLHPEYRTLPMVWYVPPLSPIQSYADAGGLPHNGNILPAVETLRIPVQYLAN
                     MLSAGDTGPVIRALKRMMAMRHYMRSQTVEGVTDTRAIDEVGLSVQQVEEMYRYLAIA
                     NYEDRFVIPTSHREMARDAFPERNGCGFTFGDGCHGSDTKFNLFNSSRIDAINITEVR
                     DKAEGE"
     gene            complement(4436..8164)
                     /locus_tag="OQP62_003248"
     CDS             complement(4436..8164)
                     /locus_tag="OQP62_003248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit alpha"
                     /protein_id="HCS1722720.1"
                     /translation="MSKLLDRFRYFKQKGDTFADGHGQMMHTNRDWEDSYRQRWQFDK
                     IVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGASYSWYLYSA
                     NRLKYPLVRKRLIELWREALSRHSDPVLAWESIMNDPQKCQSYKQVRGHGGFIRSNWK
                     ELNQLIAAANVWTIKTYGPDRVAGFSPIPAMSMVSYAAGTRYLSLLGGTCLSFYDWYC
                     DLPPASPMTWGEQTDVPESADWYNSAYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTIA
                     ITPDYSEVAKLCDQWLAPKQGTDSALAMAMGHVILKEFHLDNPSDYFLNYCRRYTDMP
                     MLVLLDERADGSYVPGRMMRASDLVDGLGEANNPEWKTVALNSTGELVAPNGSIGFRW
                     GEKGKWNLEPVAAGVETELSLSLLGQHDDVAGVAFPYFGDNENPHFRSVRQEPVLVRQ
                     LPVKRLALADGSERMVVSVYDLVLANYGLDRGLDDGHSANNYNDVKAYTPAWGEQITG
                     VPRRHIETIAREFAETAHKTHGRSMIILGAGVNHWYHMDMNYRGMINMLVFCGCVGQT
                     GGGWAHYVGQEKLRPQTGWLPLAFALDWNRPPRQMNSTSFFYNHASQWRYEKLTAQEL
                     LSPLADPTKFTGHLIDFNVRAERMGWLPSAPQLNLNPLSVKASADKAGLSAADYTMQV
                     LKSGAIRFACERPDSGHNHPRNLFVWRSNLLGSSGKGHEYMLKYLLGTDSGIQGEALG
                     SSEGIKPEEVEWQSAAIEGKLDLLVTLDFRMSSTCLFSDIVLPTATWYEKDDMNTSDM
                     HPFIHPLSAAVDPAWESKSDWEIYKGIASAFSEVCVGHLGQETDVVLHPLQHDSPAEL
                     AQPFDILDWRKGECELIPGKTAPNIVVVERDYPATYERFTSLGPLLDKLGNGGKGIAW
                     NTQDEVDFLGKLNYTKHDGPAKGRPRIDTALDASEVILALAPETNGQVAVKAWQALGE
                     MTGREHTHLAINKEDEKIRFRDIQAQPRKIISSPTWSGLESEHVSYNAGYTNVHELIP
                     WRTLSGRQQLYQDHAWMRAFGESLVAYRPPIDTRSVSEMREIPPNGFPEKALNFLTPH
                     QKWGIHSTYSENLLMLTLSRGGPIVWISEADARELGIEDNDWIEAFNANGALTARAVV
                     SQRVPPGMTMMYHAQERIMNIPGSEVTGMRGGIHNSVTRVCPKPTHMIGGYAQLAYGF
                     NYYGTVGSNRDEFIMIRKMKNINWLDDEGRDQVQEAKK"
     gene            complement(8256..9644)
                     /locus_tag="OQP62_003249"
     CDS             complement(8256..9644)
                     /locus_tag="OQP62_003249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NarK family nitrate/nitrite MFS transporter"
                     /protein_id="HCS1722721.1"
                     /translation="MTRQNENYNRYLLSDWRPENPAFWENKGKGIARRNLWISVSCLL
                     LAFCVWMLFSAVAVNLNKIGFDFTTDQLFLLTALPSLSGAILRVPYSFMVPLFGGRKW
                     TVLSTVILIIPCAWLGFAVQNPATPFGVFILIALLCGFAGANFASSMGNISFFFPKAR
                     QGSALGINDGLGNLGVSVMQLIAPLVIFLPIFTFLGVRGVPQPDGSLLALTNAAWIWV
                     PLLAVATLAAWFGMNDIGSSKASVASQLPVLKRLHLWLLSLLYLATFGSFIGFSAGFA
                     MLAKTQFPDVNILQLAFFGPFIGALARSAGGVISDKFGGVRVTLINFIFMALFTALLF
                     LTLPGSGAGSFSAFYLVFMGLFLTAGLGSGSTFQMIAVIFRQITLYNVKLRGGSDEQA
                     QREAVTDTAAALGFISAIGAVGGFFIPKAFGTSLALTGSPVGAMKIFLLFYIACVLLT
                     WLVYGRLKPKQQ"
BASE COUNT         2253 a         2636 c         2577 g         2248 t
ORIGIN      
        1 gtttaaaata ttataccgat cgggccaacg acatgccgga ggcgaaagcg caacgggcgg
       61 ccgacataaa agatcgttac cataactatt tagacaagta ttaaaaagcg tttatgttta
      121 gccagttttg ttagaaatca gactcgctga gctggcgtta aaaattttaa cacgccgcta
      181 ttttggcggc gtgtcgcaaa gagattctca gaacccgatt tccgtttata cgccaaaatt
      241 ctacgtaccc cggcggctgt agccggcctg tcttattttt tcaaaagtat ccaacgctat
      301 tccacggata gggtatcctg ttgcgcagcg atatccacct cagcctgtgt gccgaacgca
      361 agcattaatg ttaatggaag cctcagatga cctctttttt acatgcttat tttacgcgat
      421 taaattgtca gccgttgggg ggtcctacgg ttgaagcgct cagaacgctt cacttagcgc
      481 acaactgcgc gattcctttt gaaaatctgg atgtgctact gcctcgtgaa atacagcttg
      541 atgagacggc actagaggag aaactgcttt atgcccgacg cggtggatac tgttttgaac
      601 tgaatggcct gtttgaacgc gcgttacgcg acatcggttt taacgtccga agcttattgg
      661 ggcgggtcat tctgtctcat cccgccagtt taccgccgcg cacgcaccgt ttgctgctgg
      721 ttgatgttga ggatgagcag tggatcgcgg acgtggggtt tggcggccaa acgctaaccg
      781 caccgcttcg tctgcaggct gaaattgccc agcaaacgcc gcatggcgaa taccgcctga
      841 tacaggaggg gagcacatgg attttacaat tccgccacca tgagcactgg cagtcgatgt
      901 actgttttga tctgggggtg cagcagcaga gcgatcatgt aatgggcaat ttctggtcgg
      961 ctcactggcc gcaatcccat tttcgtcatc atttgttgat gtgccgccat ttgcctgatg
     1021 gcggcaagct gacattaacg aatttccact tcacgcgtta ccaccaggga catgccgttg
     1081 aacaggtcaa tataccggat gtaccgtcgt tgtatcagtt acttcagcag cagtttggtc
     1141 tcggcgtaaa tgatgtaaag cacggtttta ccgaggcgga gctggccgcg gtaatggctg
     1201 catttgatac ccatccggag gcgggaaaat aattttttgc cgcgaggatt tgcgggcctg
     1261 acaaagatta aaaagtaatg gcccattcgg catgaaacag aatgaccgcc tggccggaga
     1321 tggtgacgtt ttccggctgg ttatcgcgaa tggtgacggt aacatcaaca gtaccctctt
     1381 tgcctaaagc gcgcccctga tggccttgaa tctgtagcgt tttaccgtca tgcgccatca
     1441 ggccatgatg gacgagccat gcccccatcg ggccattggc gtttcccgtt accggatctt
     1501 ccacaattcc tatcgccggg gaaaacattc gcccatcggt ttcgtttttt cccggacgaa
     1561 tctggaaagg aaaaaagccg ttacagccaa tttgctggct gattgccgtc agggctgcca
     1621 gattcggcga aagggcatca atatcaacgt ctggtttgag caggatcatc acttttgcat
     1681 gtcctgttga agccacctga attggcgctc ccggcacgat atcatcttca gtcaggttca
     1741 gtgcggtgat gatggcagcc cgaatctctc cgactagcgg tggttcaaaa gagggctgac
     1801 cttgttccag cgtgatgcga tagtcgttgt gttcggcatg aatttcaacg cgatgacggc
     1861 ccgctaacga ggtttgccag acggtggtgt ttcccaaccc cagtaccgtt gcccgaacat
     1921 aatgcgcggc cacagtggca tgaccacaga tggggacttc tactgtcggt gtaaagtagc
     1981 gtatgcgcac atcactctct tcgcttttta gcaaaaaggc ggtttccgag tgacgaagtt
     2041 cacgggcaat cagctgcatc tgcgcgtcgc ttagcgtatc cgcatgtaag acaacgccag
     2101 cagagttgcc gcgaaagggt tcgctggtga aggcgtcaac atggtaaatc tgcggtttca
     2161 ttgatgttct cctttgactg aagaatcatc atagcctgtg cgttgccgaa tgacgacgcc
     2221 caggcgtttt tctttgcccg gtaagcgtac ccccggtcaa agagaattag cggcgggtac
     2281 gaacaatctg gtagcgacgg gtgaaatact cgaacggcgc gctccagaca tgaaccagac
     2341 gggtgaacgg gaagagcagg aaaaatcccg cgattcctga acaatctgct tggtgacact
     2401 gtcacttgta agcgtactgc ccgccagcgt cagcagggcg tcaaatagtt gataccacgg
     2461 cgctcctcgc tgtttcagac gaccgcccag tagcgccaga ataggggcaa tattctgtaa
     2521 tccctcgcgc gcttccgctt ccggcaacac gcttaagtac tccagataga gcggcaggtg
     2581 atccggcagt tcgcggcagt tgaggtgcag gcccacggtt tcatactggc ttaacaaatc
     2641 gaccatcgcc tggccgcgat cgcgggactc cgcatgaaca tgctcgaata acagcaatga
     2701 agtggcgcgc ccgcggtcaa acacttcgca ccattctgct tgtttatcca gtaacggcgc
     2761 ataaagcagc tcgcgagtga agttggccag cattggcgca tcgtgttgga ttagggcaag
     2821 cgcttcatcc cgacattccc acaactcgtc gtccggatac tccatcaaca ggccaatcgc
     2881 tttgaggatt tgcattattc cccctccgct ttatcacgta cttcggtgat attgatggca
     2941 tcaatacggc tactgttgaa caggttgaat ttggtatccg agccgtgaca accgtcgcca
     3001 aaagtaaagc cgcagccgtt gcgctccgga aaggcatcgc gcgccatttc ccggtggctg
     3061 gtgggaatga caaaacgatc ttcataattg gcaatcgcca ggtagcgata catctcttca
     3121 acctgttgta cgctcagacc gacttcgtca atggcgcggg tatccgtcac gccttcaacc
     3181 gtctgcgagc gcatgtagtg gcgcatcgcc atcatccgct ttagcgcccg aatgaccggg
     3241 ccggtatcgc ccgcgctgag catattggcc aggtactgga ccggaatacg cagcgtctcc
     3301 accgccggca gaatattgcc attgtgcggc aacccgcccg cgtcggcgta tgactggatg
     3361 ggcgatagcg gcggtacgta ccagaccatc ggcagggtac ggtattccgg gtgcagcgga
     3421 agcgccagct tccagtccat cgccattttg tacaccggcg accgttgggc ggcgtcgatg
     3481 acgttttgcg ggatgccctg tttaagcgcc tcttcgatga ccgccggatc gtgcggattg
     3541 agaaacacat cgcactgacg ttcatacaaa tctgtctcgt gttcggtact ggccgcttct
     3601 tcaatcctgt cggcgtcgta gagcagaacg ccaagataac ggatgcgccc gacgcaggtt
     3661 tccgagcaaa cggtcggctg gccggattca atacgcggat agcaaaatat gcatttctca
     3721 gacttgccgc tcttccagtt aaagtagatt tttttgtatg ggcagccgct gatacacaaa
     3781 cgccagcccc ggcatttatc ctggtcgatt agcacgatgc cgtcttcttc acgcttataa
     3841 atagcgccac ttgggcaggt ggcaacacaa ctggggttca ggcagtgttc gcacaggcgc
     3901 ggcaggtaca tcatgaaggt gttttcgaac tgaccgtaca tctccttttg tatgttgtcg
     3961 aagttgcggt cgcgggcgcg tttttcaaac tcgccgccga gcagctcttc ccagtttggc
     4021 ccccagatca ccttgtccat ccgttttccg tcgatcagtg aacgcggacg ggcagtgggc
     4081 tgatgcttac tctccggcgc tgtatgtaaa tgctgataat cgaaggtaaa gggttcatag
     4141 taatcatcga tttgcggaat caccgggttg gcgaaaattt tgctaattac ccccattttg
     4201 ccgcccagac ggggccttat cttgccatta acatcacgaa cccaaccgcc ttgccactcc
     4261 tgctggtctt cccaattttt gggatagcca atacccggtt tagtttcgac gttattgaac
     4321 catgcgtatt ccatcccttc acgtccggtc cagacgtttt tacaggtgac ggagcaggtg
     4381 tgacagccaa tacatttatc gagattcagt accatcccaa cctgtgagcg tattttcatt
     4441 ttttcgcctc ctgtacctga tcccggccct catcatccag ccagttaatg tttttcatct
     4501 tcctgatcat gatgaattca tcgcgattcg aacccacggt tccgtaatag ttgaagccgt
     4561 aagccagttg cgcatagccg ccgatcatat gcgtcggttt tggacagacc cgggtcacgg
     4621 agttatggat cccgccgcgc atcccggtga cttccgaacc cggaatgttc ataatccgct
     4681 cctgggcgtg gtacatcatg gtcatacccg gcgggacgcg ctggctgacc accgcgcgag
     4741 cggtaagggc gccattagcg ttgaaggctt caatccagtc gttatcttca atacccagtt
     4801 cacgggcatc ggcttcgctg atccagacaa tcggcccgcc gcgcgacaag gtcagcatca
     4861 gcaggttttc gctgtaggtg gagtgaattc cccatttctg gtgcggcgtc aggaagttaa
     4921 gcgctttttc cgggaaaccg ttgggcggaa tttctcgcat ttcgctgacg ctgcgggtat
     4981 caatcggcgg gcgatatgcc accaggcttt cgccaaaagc gcgcatccac gcatgatcct
     5041 gatagagttg ttgccgcccc gacaacgtgc gccacgggat cagttcatgt acgttggtat
     5101 acccggcgtt ataagagaca tgctcgcttt ccagtcctga ccaggtcggg ctggagataa
     5161 ttttgcgcgg ttgcgcctgg atatcacgaa agcgaatttt ctcatcttct ttattgatgg
     5221 ccagatgggt gtgctcgcgc ccggtcatct cgcccaacgc ctgccaggct ttcaccgcca
     5281 cctggccgtt agtttccggc gctaaggcaa gaatcacttc cgaggcatcc agcgcggtgt
     5341 cgatgcgcgg acgtcctttc gccgggccat cgtgtttggt gtaattgagc ttaccgagga
     5401 aatcgacttc atcttgcgta ttccaggcaa tacccttacc gccgttgcct aatttatcca
     5461 gcaggggacc cagcgaggta aaacgttcat aggtggccgg ataatcgcgt tcaaccacga
     5521 cgatattggg ggcggttttg cccggaataa gttcgcactc gcctttacgc cagtcgagaa
     5581 tatcaaatgg ctgcgccagt tccgccgggg aatcatgctg gagcgggtgt aacaccacat
     5641 cggtttcctg tccgaggtgt ccgacacaca cttcagaaaa ggcgctggcg atgcctttgt
     5701 agatctccca gtcgcttttg gattcccagg caggatcgac cgcggcggaa agggggtgga
     5761 taaacggatg catatccgag gtattcatat cgtctttttc ataccaggtg gcggtcggca
     5821 agacgatatc ggaaaacaga caggtactgg acatacggaa atcaagcgtg accaacagat
     5881 cgagcttgcc ctcaatcgcg gcggactgcc attccacctc ttcaggctta attccttcgc
     5941 tggaacccag cgcttcgccc tggataccgc tgtcggtgcc cagcagatat ttgagcatgt
     6001 actcatgacc tttcccggag gagccgagca ggttagagcg ccagacaaat aaatttcgcg
     6061 ggtgattatg accactgtca ggccgttcgc aggcaaaacg gatagcgcct gatttcaaca
     6121 cctgcatggt ataatccgcc gcagacagcc cggctttatc ggcgctcgct ttcacgctga
     6181 gcgggttaag attaagctgc ggcgccgagg gtagccagcc catacgttcc gcgcgcacgt
     6241 tgaaatcgat cagatgtccg gtaaatttag tcggatcggc caacggcgac agcaactctt
     6301 gcgcagtcag tttttcatag cgccactggc tggcatggtt gtagaaaaac gaggtactgt
     6361 tcatctgacg cggcgggcga ttccagtcca gcgcgaaggc cagcggcagc cagccggttt
     6421 gcggccgcag cttctcctgg ccgacatagt gcgcccagcc gccaccggtt tgtccaacac
     6481 agccgcagaa caccagcatg ttaatcatcc cacggtaatt catatccatg tgataccagt
     6541 gattcactcc cgcgccgagg atgatcatcg aacgaccgtg agttttatgg gcggtctcgg
     6601 caaattcacg cgcaatagtt tcgatatgtc gacgcggcac gccggtaatc tgttcgcccc
     6661 aggccggcgt gtaggctttg acatcgttat aattattggc gctatggccg tcatccagac
     6721 cacgatccag cccataatta gccagcacca gatcgtaaac gctgacgacc atccgctcgc
     6781 taccgtccgc cagagccagg cgtttcaccg gtaactgacg taccagcacc ggttcctgcc
     6841 gcacgctgcg aaaatgtggg ttttcgttgt cgccaaaata ggggaaggcg acacccgcca
     6901 cgtcatcatg ctgaccgagt aaagagagcg acagttcagt ttcgacgccc gccgccaccg
     6961 gttccaggtt ccattttccc ttttcgcccc agcgaaaacc gatagaaccg ttgggcgcga
     7021 ccagttcgcc cgtactgttg agcgcgacgg ttttccattc cggattattg gcttctccca
     7081 gtccatccac cagatccgac gcgcgcatca tacgccccgg tacataactg ccgtctgcgc
     7141 gctcatccaa caggactaac atcggcatgt cggtataacg gcggcaatag ttaaggaaat
     7201 agtcgctggg attatcgaga tgaaactctt tcaaaatgac gtgacccatg gccatcgcca
     7261 gcgcgctgtc ggtaccttgc tttggcgcca gccactgatc gcacagttta gcgacttcgg
     7321 aatagtccgg ggtgatggca attgtcttgg tgcctttgta gcgcacttcg gtaaagaagt
     7381 gggcgtccgg ggtacgcgtt tgcggcacgt tagagcccca ggcaataatg taggctgagt
     7441 tataccagtc ggcggactcc ggcacgtcag tctgctcgcc ccaggtcatt ggcgacgcgg
     7501 gcggaagatc gcaataccag tcatagaagc tcagacaagt accgccaagc aatgacagat
     7561 aacgtgttcc ggcggcgtaa gaaaccatcg acatcgccgg aataggtgaa aaacccgcca
     7621 cacgatccgg gccataggtt ttgattgtcc agacgttagc ggcggcaatg agctgattca
     7681 gctctttcca gttcgaacga ataaagccgc catgtccgcg cacctgtttg taactttggc
     7741 atttttgcgg gtcgttcatt atagattccc atgccagcac cggatcgctg tggcgggaaa
     7801 gggcctctcg ccacagttct atcagccgct tacgcaccag agggtatttc aaacgattgg
     7861 cgctatagag ataccaggag tagctggcgc cgcgcggttc atggttcggt aaatcgggac
     7921 gtgtgcgcgg gtagtcggtt tgctgggttt cccacgtcac cagaccattt ttgacataaa
     7981 ttttccaact acaggagccc gtgcagttga cgccgtgggt tgagcgcacg atcttatcaa
     8041 actgccagcg ctggcgataa ctgtcttccc agtcgcggtt ggtatgcatc atctgaccat
     8101 ggccgtcagc aaaggtatcg cctttttgtt taaagtaacg aaagcgatcc aacagtttac
     8161 tcatgacatt tctcctgctt cgataaattt tccgccatcc tgtcgatttg gcgttaaacc
     8221 attaccggat ggccgtccta caagtgcgta tgttgttatt gttgtttagg cttaagacgc
     8281 ccgtagacca gccaggtcag caggacgcaa gcgatgtaaa acagcaaaaa gattttcatg
     8341 gcgcccaccg gcgagccggt caaggccaaa gaggtgccaa acgcttttgg aataaagaag
     8401 ccgcccacag cgccaatagc ggagataaaa ccgagcgcgg cggcggtatc cgtcaccgct
     8461 tcgcgctgcg cctgctcatc gctcccgccg cgcagtttga cgttgtagag cgtgatctgc
     8521 cggaagatca ccgcaatcat ctggaaggta gaaccgctgc cgagacccgc tgtcaaaaac
     8581 aggcccataa aaacaagata gaacgcgcta aagctgcctg cgccggagcc tggcagcgtg
     8641 aggaatagca gggcggtaaa cagcgccata aagataaaat taatgagcgt gacgcgaacg
     8701 ccgccgaatt tatcggagat cacgccgcct gccgatcgcg ccagcgcgcc gataaagggg
     8761 ccaaagaacg ccagttgcag aatgtttacg tcgggaaatt gcgttttggc gagcatggcg
     8821 aaacctgcgg aaaagccgat gaatgacccg aatgtcgcca ggtacagcag gctaagcagc
     8881 cacaggtgca gacgttttag caccggcaat tgcgaggcga cagacgcttt tgaactgccg
     8941 atatcgttca taccaaacca ggcggcaagc gtcgcaacag ccagtaacgg cacccagatc
     9001 caggcggcgt tagtgagggc gagcagggag ccatcaggtt gcggcacgcc ccggacgcct
     9061 aaaaaagtaa atatcggcaa aaaaataacc agcggcgcaa tcaactgcat cacactgacg
     9121 ccaagatttc ccagtccgtc gttaataccc aacgcgctac cttgtctggc ttttggaaag
     9181 aaaaaactga tgttgcccat actggacgcg aaatttgccc ccgcaaaacc gcacaacaga
     9241 gcgatgagta taaatacccc gaaaggggtg gcaggatttt gcacggcgaa tcccagccag
     9301 gcgcaaggaa taatcaatat tacggtactt aatacggtcc atttacgacc accaaacagt
     9361 ggtaccataa aggagtaggg aacgcgtaat attgcgccgg aaagagaagg taatgcggtt
     9421 aataaaaaga gttggtcggt cgtaaaatca aatccaattt tattgaggtt gacggcaaca
     9481 gcgctaaaca acatccagac gcaaaatgca aggagcaaac aacttactga aatccataag
     9541 tttcttctgg cgatgccttt ccctttattc tcccagaagg ctggattttc gggtcgccag
     9601 tcactcaaga gataacggtt ataattctcg ttttgtcgtg tcattttacc cctcacatgc
     9661 gcatatcatt tgaaaaaaaa cacaaaaaag agacagagcg tcacgcgctc tttt
//
LOCUS       DAJVSD010000173         9611 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.173, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000173 DAJVSD010000000
VERSION     DAJVSD010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9611)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9611)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9611
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.173"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(167..1222)
                     /gene="dinB"
                     /locus_tag="OQP62_003250"
     CDS             complement(167..1222)
                     /gene="dinB"
                     /locus_tag="OQP62_003250"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HCS1722722.1"
                     /translation="MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTA
                     NYPARQFGVRSAMPTAMALKLCPHLTLLPGRFDAYKEASRHVRDIFSRYTSLIEPLSL
                     DEAWLDVTDSPHCYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNG
                     QYVITPADVPDFLKTLPLAKIPGVGKVSAAKLENMGLRTCGDIQQCDLAMLLKRFGKF
                     GRVLWERSQGIDERDVNSERLRKSVGVERTLAEDIHEWSDCEAIIEHLYPELERRLAI
                     VKPDLLIARQGVKLKFNDFQQTTQEHVWPQLNKEDLITTARKTWDERRGERGVRLVGL
                     HVTLLDPQLERQLVLGL"
     gene            1472..2212
                     /locus_tag="OQP62_003251"
     CDS             1472..2212
                     /locus_tag="OQP62_003251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HCS1722723.1"
                     /translation="MRKIAFFLAMLLMPCVSFAGLLSSSSPVTPVSKEYKQQLMGSPV
                     YIQIFKEERTLDLYVKMGEQYQLLDSYKICNYSGGLGPKRRQGDFKSPEGFYSVQRNQ
                     LKPDSRFYKAINIGFPNAYDRAHGYDGKYLMIHGACVSVGCYAMTDSGIDEIFQFVTA
                     ALVFGQPSVQVSIYPFRMTDANMQRHKYSYYKDFWAQLKPGYDYFEQTHKPPTVSIVD
                     GRYVVSKPLSHEVVQPQLASNYTLSEAK"
     gene            complement(2183..2950)
                     /locus_tag="OQP62_003252"
     CDS             complement(2183..2950)
                     /locus_tag="OQP62_003252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HCS1722724.1"
                     /translation="MCELLGMSANVPMDICFSFTGLVQRGGGTGPHKDGWGITFYEGK
                     GCRTFKDPQPSYHSPIAKLVQNYPIKSCSVIAHIRQANRGEVALENTHPFTRELWGRN
                     WTYAHNGQLNGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMTAVFKYIA
                     TLATVLREKGVFNMLLSDGRYVMAFCSTHLHWITRRAPFGVATLVDQDMEIDFSSQTT
                     PNDVVTVIATQPLTGNETWQKIMPGEWALFCLGERII"
     gene            complement(3114..3692)
                     /gene="lpcA"
                     /locus_tag="OQP62_003253"
     CDS             complement(3114..3692)
                     /gene="lpcA"
                     /locus_tag="OQP62_003253"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HCS1722725.1"
                     /translation="MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAG
                     GKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVSNDFGYDYIFS
                     RYVEAVGREGDVLLGISTSGNSGNVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEI
                     RVPHFGYADRIQEIHIKVIHILIQLIEKEMVK"
     gene            3932..6376
                     /gene="fadE"
                     /locus_tag="OQP62_003254"
     CDS             3932..6376
                     /gene="fadE"
                     /locus_tag="OQP62_003254"
                     /EC_number="1.3.8.7"
                     /EC_number="1.3.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase FadE"
                     /protein_id="HCS1722726.1"
                     /translation="MMILSIIATVVLLGALFYHRVSLFLSSLILLAWTAALGVAGLWS
                     IWLLVPLAIILVPFNLTPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDL
                     FQGKPDWKKLHNYPQPQLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLK
                     EHRFFAMIIKKEYGGLEFSAYVQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGT
                     EEQKNHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGVVCMGEWQGQQVLGMRLTWN
                     KRYITLAPIATVLGLAFKLSDPDRLLGGEEELGITCALIPTSTPGVEIGRRHFPLNVP
                     FQNGPTRGNDIFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALA
                     TGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAI
                     VKYHCTHRGQQSIIDAMDITGGKGIMLGESNFLARAYQGAPIAITVEGANILTRSMMI
                     FGQGAIRCHPYVLEEMAAAQNNDVNAFDKLLFKHIGHVGSNTVRSFWLGLTRGLTSHT
                     PTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISTRLGDVLSQLYLASAV
                     LKRYDDEGRHEADLPLVHWGVQDALYRAEQAMDDLLQNFPNRVVAGLLTAMIFPTGRH
                     YLAPSDKLDHAVAKILQVPNATRSRIGRGQYLTPAEHNPVGLLEEALRDVIAADPIHQ
                     RICKELGKNLPFTRLDELARNALAKGLIDKDEAAILAKAEESRLRSINVDDFEPEALA
                     TKPVKLPEKVRKVEAA"
     gene            6484..7251
                     /locus_tag="OQP62_003255"
     CDS             6484..7251
                     /locus_tag="OQP62_003255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HCS1722727.1"
                     /translation="MSGLKITLLQQPLVWMDGLANLRHFDRQLELVSGRDVIVLPEMF
                     TTGFAMEAANNSLSQDSVITWMQAKARQTDALIAGSAALQTERGAVNRFLLVEPEGKV
                     HLYDKRHLFRMADEHQHYAAGDKRIIVQWRGWRILPLICYDLRFPIWSRNRNDYDLAL
                     YVANWPAPRSLHWQTLLTARAIENQAYVAGCNRVGTDGNGLHYRGDSRIINPQGDIIA
                     TAEPHQATRIDADLSLVALQDYREKFPAWRDADPFTL"
     gene            7561..7968
                     /locus_tag="OQP62_003256"
     CDS             7561..7968
                     /locus_tag="OQP62_003256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HCS1722728.1"
                     /translation="MKNFVRTTLLAATLAGVSFGAFATAVPNPPLPAQDPIVQHLKLT
                     NDQITRIKKLHQQLETDVSQISMKGIKDGALIEVIKSGKWDDAAVKQQLAAFSNIEQQ
                     ARYYRVKYYFDLSKVLTPEQRQQVQQDLAQALE"
     gene            8293..9012
                     /gene="pagN"
                     /locus_tag="OQP62_003257"
     CDS             8293..9012
                     /gene="pagN"
                     /locus_tag="OQP62_003257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin/invasin protein PagN"
                     /protein_id="HCS1722729.1"
                     /translation="MKNFFAVCIIPLVVTWSATASAKEGIYITGKAGTSVVNVYGINS
                     TFSQEEIVNGHATLPDRTKGVFGGGVAIGYDFYDPFQLPVRLELDTTFRGETDAKGGQ
                     DIIAFGQPVHINVKNQVRMTTYIVNGYYDFHNSTAFTPYISAGVGLAHVKLSNNTIPV
                     GFGINETLSASKNNFAWGAGIGAKYAVTDNIMIDASYKYINAGKVSISKNHYAGDEHT
                     AYDADTKAASNDFMLGITYAF"
     gene            complement(9016..9204)
                     /locus_tag="OQP62_003258"
                     /pseudo
     CDS             complement(9016..9204)
                     /locus_tag="OQP62_003258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459303.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            9240..9373
                     /locus_tag="OQP62_003259"
                     /pseudo
     CDS             9240..9373
                     /locus_tag="OQP62_003259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus and C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         2414 a         2469 c         2352 g         2376 t
ORIGIN      
        1 gcaataaaag aaaattaatc ctggaaaggt ctgcaaagtg cgttcagaga ataaagtgtc
       61 atgatgaacc tcctttgcag ttattgagaa tgagaaaacg cgggtatagt aatactgaaa
      121 tttagatggc gcaatcgtaa tagtgataaa atcttaatag cctgacttat aaccctaaca
      181 ccaactgtcg ttccaactga gggtcgagca gcgttacgtg tagccccacc aaccgtacgc
      241 cgcgctcgcc gcgacgctcg tcccaggttt tacgggcggt ggtaattaag tcttctttat
      301 ttaattgcgg ccagacatgt tcctgagtgg tttgctgaaa atcattaaat tttaatttaa
      361 cgccctgtcg ggcaatcagt aaatcgggct ttactatagc cagacgacgc tccagttccg
      421 gatataaatg ttcaataatg gcctcgcagt ccgaccattc atgaatatcc tccgccagag
      481 tacgctcaac gcctaccgat ttacgcagcc tttcgctgtt aacatcacgc tcgtcaatac
      541 cctgactacg ctcccataat acccggccaa atttaccaaa gcgtttgaga agcatcgcca
      601 gatcgcactg ttgaatatcc ccgcaggttc ttaaccccat attttccagt ttggcggcgg
      661 aaactttccc cacgcctgga attttggcta acggcaacgt tttaagaaag tcgggtacat
      721 cggctggcgt aataacatat tgtccgttcg gtttattgag atcggaggcg atcttcgcca
      781 gaaatttcac tggcgcaacg ccggcggagg cggtgagttg cagttcattg aaaatagtct
      841 gacgaatctc cctggcgatc agagttgccg aaccataaca gtgcgggctg tcagtcacat
      901 ccagccaggc ttcatccagc gagagcggtt caatcagtga agtgtagcgg gaaaagatgt
      961 cacgtacatg ccgcgaagcc tctttatagg cgtcaaagcg gccaggcagt aaggtgagat
     1021 gggggcacag ctttagcgcc atggcagtcg gcatcgcgct gcgtacgcca aactggcgcg
     1081 caggatagtt ggcggtactg ataacgcctc ttcgctcacg actcccgcca atggcaatgg
     1141 ggatatcgcg taacgccgga ttatcacgca tctctaccgc ggcaaaaaaa cagtccatat
     1201 caacatgtat gattttgcgc atcgctcgcc cccacaatac tgtttaagtg tacagtatgt
     1261 tttattgcgc gcaaagagac attcgcgtta aaaatgcgac atattcgaag gtatgacgac
     1321 gaaagcggcg ggaaaattgt aaacgtacac acggggactt gcgaaaaact gccgtggtgc
     1381 taatgtgagc gctccaaatc cagattactc cgatttgggg actcttttgc cgttctggcg
     1441 tgtgtaaccg ttttatcaag gaacaagcag tatgcgtaaa atcgcatttt ttcttgcgat
     1501 gcttctgatg ccgtgcgtct catttgccgg tttgctgagc agcagcagcc ccgtcacgcc
     1561 ggtcagtaaa gagtataagc agcagttaat gggctcaccg gtctatattc aaatttttaa
     1621 agaagagcgc acccttgatc tctacgtcaa aatgggtgag caataccagt tgcttgatag
     1681 ctacaaaatt tgcaactatt ccggcgggtt aggcccgaaa cgccgtcagg gcgattttaa
     1741 aagtccggaa gggttttaca gcgttcagcg taatcaactc aagccagaca gccgttttta
     1801 taaggccatc aacattggtt ttcccaatgc ctacgatcgc gcgcatggct atgatggtaa
     1861 atatctgatg attcacggtg cctgtgtttc cgtcggctgc tatgccatga ccgacagcgg
     1921 cattgatgag attttccagt ttgtcaccgc cgcgctggtc tttggtcagc caagcgtaca
     1981 ggtgagtatt tatccgttcc ggatgaccga cgccaatatg cagcgtcata aatattcata
     2041 ttacaaagat ttctgggcgc agctaaaacc cggctacgat tattttgaac agacgcataa
     2101 gccgccaact gtttctatcg ttgatggacg ttacgtcgtg agcaaaccgt tgagtcacga
     2161 agtcgttcag ccacagctgg cctcaaatta tacgctctcc gaggcaaaat aacgcccatt
     2221 cgcctggcat aatcttttgc caggtttcat tccccgttag cggctgggta gcaatcacgg
     2281 taaccacgtc atttggcgtg gtctgtgaac tgaaatcaat ttccatatcc tgatccacca
     2341 gcgtggctac gccaaacggc gcccggcgag tgatccagtg caaatgggtt gagcaaaacg
     2401 ccatcacata tcgcccatct gacagcagca tgttaaaaac gcctttttca cgtaataccg
     2461 tcgccagtgt cgcaatatat ttaaataccg ctgtcatgtt gcccggcgtg cggggataac
     2521 gctgcgttaa tttatgcaat agccagcaaa acgctttttc gctgtcggtt tcccccaccg
     2581 gacgaaaatt accggtttcc agcgacttat aaccgttgag ctgaccgtta tgagcataag
     2641 tccagttgcg tccccataat tcccgggtaa aagggtgtgt attttccagc gctacttcac
     2701 cgcgattagc ctgacggata tgagcgataa ccgagcagga cttgatcggg taattctgta
     2761 ccagtttcgc aatcggcgaa tggtagctcg gttgcggatc tttaaacgtg cgacagccct
     2821 ttccttcgta aaaggtaatt ccccagccgt ctttatgcgg cccggttccg ccgccacgct
     2881 gcaccagtcc ggtgaagcta aagcagatat ccatcggcac attggcgctc atcccaagca
     2941 gttcgcacat acatcaccta ccttaaaacg gttaattgcc tgataagacc agcaaagcac
     3001 agctcgtagg ccggataaga cgcttgcgtc gccatccggc acaatgcccg atggcgcttc
     3061 gcttatcggg cctactcgtt ccaggcccga taagaccggc aaaaattatc ggcttattta
     3121 accatctctt tttcgatcaa ctgaatcagg atatgaatca ctttgatatg aatttcctga
     3181 atacgatcgg cataaccgaa gtgcggtacg cgaatttcaa tatccgccgt tcccgccatt
     3241 ttgccgccgt ctttgccggt caacgtaatc actttcatgc ctttttcacg ggccgcggca
     3301 atcgctttaa tcacgttacc agagttaccc gacgtcgaga tccctaacag gacatcgcct
     3361 tcgcgcccta ccgcctcaac gtaacgagag aaaatatagt catagccaaa atcattactg
     3421 acgcaggata tatggctaac atcagaaatc gcaattgccg ggtagcccgg acgattttca
     3481 cgataacgac ctgtcagctc ttcagcaaag tgcatcgcat cgcaatggga gccgccgtta
     3541 ccgcaggaaa gtaccttacc acccgcttta aaactgtcag ccaacaggac cgccgcgcgc
     3601 tgaatggcgt gaatattggc gtcatctttt aaaaaattag ccagcgtttc cgccgcttcg
     3661 ttcagttcgt tacgaataag atcctggtac atgaggatat ccttcagcat gaatgtaaat
     3721 gacagtatgc agtgtaccgg atagcagtac aggcgagaag cataagccga attaacgcct
     3781 cacgcttttg atttttcgtg cccccaaaaa cggcaacaat gtgagctttg ttgtaattat
     3841 tttgtaaaca cattgctaaa agattttaca tccactacaa cctaatcatc acaagtggtc
     3901 agacctccta caagcaaggg agcttttcgt tatgatgatt ttgagtatta tcgctacggt
     3961 tgttctgctc ggcgcattgt tctatcaccg cgtgagttta tttctcagca gcctgattct
     4021 gctcgcctgg accgccgcac ttggcgtcgc tggcctgtgg tccatctggc tgttggttcc
     4081 tctggccatt atcctcgtgc cgtttaacct cacaccgatg cgaaaatcaa tgatttccgc
     4141 accggtgttc cgcggcttcc gtaaggtcat gccgccgatg tcgcgcactg agaaagaagc
     4201 gattgatgcc ggtacaacct ggtgggaagg cgatctgttc cagggcaagc ctgactggaa
     4261 aaaactgcac aactatccgc aaccgcaact cactgccgaa gagcaagcgt ttctcgacgg
     4321 cccggtagaa gaagcgtgcc ggatggcgaa cgatttccag attacccatg aactggcgga
     4381 tctgccgccg gaactgtggg cttacctgaa agagcatcgt ttttttgcga tgatcattaa
     4441 aaaagagtac ggcgggctgg agttctccgc ttatgtgcag tcccgtgtac tgcaaaaact
     4501 gtccggcgtc tccgggattc tggctatcac cgtcggcgtt ccaaactcac tcggccctgg
     4561 cgagctgttg cagcactatg gtacggaaga gcagaagaat cactatctgc cgcgactggc
     4621 gcgcggccaa gaaatcccct gctttgcgct gaccagcccg gaagcaggtt ctgatgcagg
     4681 cgctattccg gataccggcg tggtttgcat gggcgaatgg cagggccagc aggtgctggg
     4741 tatgcgtctg acctggaaca agcgttacat tacgctggcg ccgatagcta ccgtgttggg
     4801 cttggcgttt aagctttccg atccggatag attgttaggc ggagaagaag agctgggtat
     4861 tacctgcgcc ctgatcccca cctcaacgcc gggtgtggaa attggtcgtc gtcacttccc
     4921 gcttaacgtt ccgttccaga atggcccaac ccgcggtaac gatattttcg tgcctattga
     4981 ttatattatc ggcggcccca aaatggccgg acagggctgg cgtatgctgg tggaatgttt
     5041 gtcggtagga cgcggtatta ccctgccgtc caactccact ggcggggtga aatccgtcgc
     5101 gctggcaacc ggcgcctatg ctcacattcg tcgtcagttc aaaatttcta tcggcaagat
     5161 ggaaggtatt gaagaaccgc tggcgcgtat tgcaggtaac gcttatgtga tggatgccgc
     5221 cgcatcgtta atcacctacg gcattatgct aggcgaaaaa ccggcggtac tgtcggctat
     5281 cgtgaagtac cactgcaccc accgcggcca gcagtccatt atcgacgcga tggatatcac
     5341 tgggggtaaa ggcattatgc tgggcgagag caacttcctg gcgcgtgctt accagggcgc
     5401 gcctatcgcg atcaccgtgg aaggcgcgaa tatcctgacc cgtagcatga tgatctttgg
     5461 tcagggcgcc attcgctgcc atccttatgt actggaagag atggccgcag cgcagaataa
     5521 tgatgtgaat gcctttgata aactgttgtt taaacatatt ggccatgtcg gcagcaatac
     5581 cgtccgcagt ttctggcttg gcctgacccg cggattaacg agccatacgc caaccggcga
     5641 cgccacgaag cgttattacc agcatctgaa ccgactgagc gcaaacctgg ccctgctgtc
     5701 cgacgtgtca atggcggtac tgggcggcag cctgaaacgc cgcgagcgta tctccacgcg
     5761 tctgggcgat gtgttgagtc agctttatct ggcctcagcc gtactgaagc gttacgacga
     5821 cgaaggccgc cacgaagccg acctgccgct ggtgcactgg ggcgtacagg atgcgctgta
     5881 tcgtgctgaa caagcgatgg acgatctgct gcagaacttc ccgaaccgcg tcgtggccgg
     5941 attgctcacc gcgatgatct tcccgactgg ccgtcattat ctggcgccgt ctgataagct
     6001 ggatcacgcc gtggcgaaga tcctacaggt gccgaacgcc acacgttcac gtattgggcg
     6061 cggtcagtat ctgacgcccg ccgaacataa tccggtcggt ttactggaag aagcgctgcg
     6121 tgatgtcatc gctgccgacc ctatccacca gcgcatctgc aaagaactgg gtaaaaatct
     6181 gccgtttact cgtctggatg aactggcgcg caatgcgctg gcgaaagggc ttatagataa
     6241 agatgaagcc gccatcctgg cgaaagcgga agagagccgc ctgcgcagta tcaacgttga
     6301 tgattttgaa cctgaagcgc tggcgaccaa accggtaaag ctgccggaga aagtgcgtaa
     6361 agtcgaagcc gcataatcag tctcgtgtct ttcctgcccc gctttcgcgg ggcttttctt
     6421 gccgcttttt tattattgct catgctacag tgtaaagacg ctgttcaatg aggagctccg
     6481 atcgtgtctg gtttgaaaat tactctgttg caacaacctt tagtctggat ggacggcctg
     6541 gcaaacctgc gtcattttga cagacagcta gagctcgtat ctggccggga tgtgattgtt
     6601 ctgcctgaaa tgtttaccac cggcttcgcg atggaggccg ctaataactc actttcgcaa
     6661 gatagcgtga ttacgtggat gcaggccaaa gcccgacaaa ctgacgctct gattgccggc
     6721 agcgcggcgc tacaaactga gcgcggcgcc gtaaatcgct tcttactggt tgaaccggaa
     6781 ggcaaagttc atctctatga taagcgccat ctgtttcgta tggcggatga acatcaacat
     6841 tatgccgcag gcgataaacg catcatcgtg cagtggcgcg gttggcgcat cctgccgttg
     6901 atctgttacg atctgcgctt tccgatatgg tcgcgcaacc gcaatgatta cgatctggcg
     6961 ctgtatgtag cgaactggcc cgcgccgcgc tcgctacact ggcaaacatt actgacggcg
     7021 cgcgctattg aaaatcaggc ttatgtcgca ggctgcaacc gggttggcac cgatggcaac
     7081 gggttacatt atcgcggcga tagccgaatc attaatcccc agggcgacat tatcgccacc
     7141 gccgaaccac accaggcgac acgtatcgat gcagatcttt ctctcgtcgc cttgcaggac
     7201 tatcgcgaaa aatttccagc ctggcgcgat gccgatccat tcaccttgta agcaacctgc
     7261 cgctcaccgc ggcgggattg tttcactccg taactctccg taaaacaaat tcgcgtggcg
     7321 taatgtggca ggcaacgtat tctgactaag agcctatccc accaggcgtt attggcgcag
     7381 tcagtttgga cacggacagc gcgcaaaaac cggagcgtac acgtagtacg tgaggatttt
     7441 gagcactgcc caggtccaaa atggcaagta aaatagccct aatgggatag gctctaagat
     7501 aattgctcgc cattcgtggg taataaaaac ggttaatcac tcccttatca ggatatcttc
     7561 atgaaaaact ttgtacgcac aactttactg gcagcgactc tggcgggcgt ttcttttggc
     7621 gctttcgcca ccgctgttcc caatcctccc ctgcccgccc aggatcctat tgtccagcat
     7681 ctgaagctga caaacgatca gattacccgg atcaaaaaac ttcaccaaca actggaaacc
     7741 gacgtcagtc agatttctat gaagggaatt aaagacggtg cgctgataga ggtgattaaa
     7801 tccggtaaat gggatgacgc cgccgtaaaa cagcagcttg cagccttcag taacatagaa
     7861 caacaggctc gctattatcg ggttaaatat tattttgatt taagcaaagt cttaacacca
     7921 gaacagcgtc aacaggtaca acaagatctc gcccaagcac ttgagtaaat atttttgccc
     7981 gttattcctg gataacgggc tttatccagg tcgggtacaa attcatcttt ttcttacagc
     8041 atcgcaccat ctcacactac ccgttacaca acgtagaagt gaaaccgtac gtggggcaat
     8101 ttggcgagga gatggatttc cataccgacg attatcgtat tgttatttaa aatcttcatc
     8161 tcatttttta cccgcttaca gaaaacccag cgttacaata gaccgttttt tgggcttcgt
     8221 ttatgtaatc gttatatcac accctatacc gtgaaacttg tcttttagcc caatattaag
     8281 gcaggttctg aaatgaaaaa ctttttcgca gtctgcatca ttccccttgt ggtaacctgg
     8341 tccgctactg catcagcaaa agaagggatc tatatcaccg ggaaagcggg gacatccgta
     8401 gtcaatgtct atggaatcaa ctcaaccttc agccaggagg agatagtcaa tggtcatgca
     8461 acgttacctg accgtaccaa aggcgttttt ggcggcgggg ttgctatcgg ttatgacttt
     8521 tatgatccat tccagcttcc agtacgttta gaactggata ccactttcag aggtgagacg
     8581 gatgctaaag gcgggcagga tattattgca tttggtcagc cagtacacat aaatgtaaaa
     8641 aatcaggtcc gaatgaccac ttacatagtt aatggttatt atgattttca caatagtacg
     8701 gcatttacac cctatatcag cgcaggcgtt ggcctcgctc atgtgaagct aagtaataac
     8761 accattcctg ttggttttgg tattaatgaa actctgtctg cttcaaaaaa taactttgcc
     8821 tggggcgcag gtatcggtgc aaaatatgct gtaacagata atattatgat tgacgccagt
     8881 tataaataca ttaatgcagg caaagtgagc atttcaaaaa atcactatgc tggtgatgaa
     8941 cataccgctt atgatgcaga cacaaaggct gcctccaatg acttcatgct cggcattact
     9001 tacgcctttt aaacactatc ggtaaaatag ctggtcctgt gggttcccga aggcgcaatg
     9061 gaggatatca gtaatgaata ctcctgcgcc ttcagaaaat cgttgaacag gtgcaacctg
     9121 gcgccatttt tcagtacact gcaacgtttc tggtatgggc ttaacttccg gctacccaaa
     9181 aacagtcccg tcctgttgta tgatctctaa atgtgaatgg cacgattatg cgagatactt
     9241 acaagtgtct ggtatgaaga tatactgcga acgccgatgt aaacggcgcg cgtaacattt
     9301 tagagcggga cacgccgtgc ttgcctgtgg aaggagcgtg cagtcaggca gcccgttgga
     9361 gcaggaaccc acgcccttca ggacgtggag gatgtcaatg cacaagaatt ggggaatctt
     9421 tagcagaatt tattatctct acagtagcat ctctcttgtt cccgtcataa ataacccaat
     9481 gcctccagat ctgaaaccgc cttcagcatg agcactggct gcaaataaca ccaaataaaa
     9541 taataatata acaactaccg agacaaaaaa cacctctcta aagtatttag aattcataca
     9601 gtcagctcat t
//
LOCUS       DAJVSD010000174         9570 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.174, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000174 DAJVSD010000000
VERSION     DAJVSD010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9570
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.174"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(344..1642)
                     /gene="pbp4b"
                     /locus_tag="OQP62_003260"
     CDS             complement(344..1642)
                     /gene="pbp4b"
                     /locus_tag="OQP62_003260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin binding protein PBP4B"
                     /protein_id="HCS1722730.1"
                     /translation="MKFTLVATVLLTFSLSAFAVEYPVLTTASPDQVGFDSQKLHRLD
                     GWIQNQIDAGYPSINLLVIKDNHIVLQKAWGYAKKYDGSTLLAHPIRATTNTMYDLAS
                     NTKMYATNFALQKLVYEGKIDVNDLVSKYIPGFKDMPGDKIKGKDKLRIIDILHHVAG
                     FPADPQYPNKNVAGKLFSQSKSTTLEMIKKTPLEYQPGSKHIYSDVDYMILGFIIESI
                     TAMPLDRYVETTIYKPLGLKHTVFNPLMKGFTPPQIAATELHGNTRDGVIHFPNIRTN
                     TLWGQVHDEKAWYSMGGVSGHAGLFSDTHDMAVLMQVMLNGGGYGNVKLFDNKTVAQF
                     TRRSPEDATFGLGWRVNGNASMTPTFGVLASPQTYGHTGWTGTLTSIDPVNHMAIVIL
                     GNRPHSPVANPKVNPNVFVSGLLPAATYGWIVDQIYGSLK"
     gene            1846..2421
                     /gene="nudK"
                     /locus_tag="OQP62_003261"
     CDS             1846..2421
                     /gene="nudK"
                     /locus_tag="OQP62_003261"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose pyrophosphatase NudK"
                     /protein_id="HCS1722731.1"
                     /translation="MSQTITLIKDKILSDNYFTLRNITYDLTRRNGEVIRHKREVYDR
                     GNGATILLYNSTKKTVVLVRQFRVATWVNGNQDGMLIETCAGLLDNDEPEVCIRKEAI
                     EETGYDVGEVRKIFELYMSPGGVTELIHFFIAEYHDSERASIGGGVEDEEIEVLELPF
                     SRALEMVRSGEIRDGKTVLLLNYLQTSHLMD"
     gene            2546..3589
                     /locus_tag="OQP62_003262"
     CDS             2546..3589
                     /locus_tag="OQP62_003262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1176 domain-containing protein"
                     /protein_id="HCS1722732.1"
                     /translation="MRYRVILFCLFGLLPVQLLWAAPAQRTFSDWQVTCNNQNFCVAR
                     NTGEHHGLVMTLSRSAGARTDAVLRIDRGGLAPPDAKEAAIAPRLLLDGKPLSFNSSH
                     WRVSPWHLMTGDPATITAFLQTIQDAQAITLKNGVQTLSLAGLKAALLFIDAQQKRVG
                     SETAWIEKGNEPPLSVPPAPALKGIAVINPTPVPLSEEERDDLLDYAAWRVNGIRCSL
                     DPLRRETQVSALTDDKALLIVNCEAGAYNTIDLAWVVSRKKTLVSRAVRLRLPFNRGV
                     ESNDMELMNAFFDEKTRELVTLAKGRGLTDCGIQTRWRYDGDRFRLVRYAEEPSCDSW
                     HGPDAWPTLWITR"
     gene            3717..3947
                     /locus_tag="OQP62_003263"
     CDS             3717..3947
                     /locus_tag="OQP62_003263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722733.1"
                     /translation="MKINNGPVLCPHCGCLSAYYEIDRLAAIREKVNKEGGSAAWDST
                     LQAHKKKAFCLMCHKSIDEVVIGQSDAPESTK"
     gene            complement(4010..6010)
                     /gene="tkt"
                     /locus_tag="OQP62_003264"
     CDS             complement(4010..6010)
                     /gene="tkt"
                     /locus_tag="OQP62_003264"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HCS1722734.1"
                     /translation="MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFL
                     KHNPTDPTWYDRDRFILSNSHASMLLYSLLHLTGYDLPLEELKNFRQLHSKTPGHPEI
                     GYTPGVETTTGPLGQGLANAVGLAIAERTLGAQFNRPDHEIVDHYTYVFMGDGCLMEG
                     ISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVVHDIDGH
                     APEAVKKAILEAQSVKDKPSLIICRTVIGFGSPNKAGKEESHGAALGEEEVALTRQKL
                     GWHHPAFEIPKEIYRAWDGREKGEKAQQQWQEKFAAYEKAYPELAAEFTRRMSGGLPE
                     AWESATQKFINDLQANPAKIATRKASQNTLNAYGPLLPELLGGSADLAPSNLTIWKGL
                     TSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALM
                     KARQIMVYTHDSIGLGEDGPTHQAMEQLASLRLTPNFSTWRPCDQVEAAVGWKLAIER
                     QHGPTALILSRQNLAQVERTPEQVKAIARGGYILKDSGGKPDIILIATGSEMEITLQA
                     AEKLTGEGHNVRVVSLPSTDIFDAQDEAYRESVLPAHVTARVAVEAGIADYWYKYVGL
                     KGAIIGMTGYGESAPADKLFPYFGFTVENIVEKARRVLNIKG"
     gene            complement(6030..6980)
                     /gene="tal"
                     /locus_tag="OQP62_003265"
     CDS             complement(6030..6980)
                     /gene="tal"
                     /locus_tag="OQP62_003265"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HCS1722735.1"
                     /translation="MNQLDGIKQFTTVVADSGDIESIRHYQPQDATTNPSLLLKAAGL
                     EQYGHLIEDAIAWGKKHGGTQEQQVAAASDKLAVNFGAEILKSIPGRVSTEVDVRLSF
                     DKEKSIEKARHLVDLYQQQDVDKSRILIKLAATWEGIRAAEQLEKEGINCNLTLLFSF
                     AQARACAEAGVYLISPFVGRIYDWYQARSPLEPYVVEEDPGVKSVRNIYDYFKQHRYE
                     TIVMGASFRRTEQILALTGCDRLTISPNLLKELKEKEEPVIRKLVPSSQMFHRPTPMT
                     EAEFRWEHNQDAMAVEKLSEGIRLFAVDQRKLEDLLAAKL"
     gene            7252..9531
                     /gene="maeB"
                     /locus_tag="OQP62_003266"
     CDS             7252..9531
                     /gene="maeB"
                     /locus_tag="OQP62_003266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxaloacetate-decarboxylating
                     malate dehydrogenase"
                     /protein_id="HCS1722736.1"
                     /translation="MDEQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVA
                     APCLEIEKDPLAAYKYTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFA
                     GIDVFDIEVDELDPDKFINVVAALEPTFGGINLEDIKAPECFYIEQKLRERMNIPVFH
                     DDQHGTAIISTAAILNGLRVVEKNISDVRMVVSGAGAAAIACMNLLVALGMQKHNIVV
                     CDSKGVIYKGREPNMAETKAAYAVDDSGKRTLDEVIDGADIFLGCSGPKVLTQEMVKK
                     MARAPMILALANPEPEILPPLAKEVRPDAIICTGRSDYPNQVNNVLCFPFIFRGALDV
                     GATAINEEMKLAAVRAIAELAHAEQSEVVASAYGDQDLSFGPEYIIPKPFDPRLIVKI
                     APAVAKAAMDSGVATRPIADFDAYIDKLTEFVYKTNLFMKPIFSQARKDPKRVVLPEG
                     EEARVLHATQELITLGLAKPILIGRPSVIEMRIQKLGLQIKAGVDFEIVNNESDPRFK
                     EYWSEYYQIMKRRGVTQEQAQRAMIGNHTAIGAIMVQRGEADAMICGTIGDYHEHFSV
                     VKAVFGYRDGVHTAGAMNALLLPSGNTFIADTYVNEDPTPEQLAEIAVMAAETVRRFG
                     IEPKVALLSHSNFGSSNSLSASKMRETLERVRERAPDLMIDGEMHGDAALVESIRNDR
                     MPDSPLKGAANILVMPNMEAARISYNLLRVSSSEGVTVGPVLMGVSKPVHVLTPIASV
                     RRIVNMVALAVVEAQTTPL"
BASE COUNT         2222 a         2467 c         2584 g         2297 t
ORIGIN      
        1 cgcagggctg gacgccctgc gataaacatt ttcccgctgg gtcgatgttt aacaggcctg
       61 ataaggtcaa tcttagtatt gaaaatagag tgtaaattga aggaagggac gctatcagaa
      121 tcccttctta gagcctatcc cattagggct attttacgtg ccattttgga cctgggcagt
      181 gctcgccaaa acgcgttagc gttttgaacg ccgcttgcgg cggcccgaag gacgagcgta
      241 gcgagtcaaa cctcacgtac tacgtgtacg ctccggtttt tgcgcgctgt ccgtgtccaa
      301 actggctgcg ccaataacgt ctggtgggat aggctcttaa tttttatttt aaggaaccat
      361 atatctggtc aacaatccag ccatacgtcg ccgcaggtaa taatccactg acaaaaacat
      421 tcgggttcac tttaggattt gctaccggcg agtgcggcct gttacctaaa ataacaatcg
      481 ccatatgatt aaccggatcg atagacgtca gcgttccggt ccatccggta tgtccatacg
      541 tttgcggact ggctaatacc ccgaacgttg gggtcattga ggcgttgccg ttaacgcgcc
      601 accccagacc aaaggtagca tcttctggcg agcggcgagt aaactgcgca accgttttgt
      661 tgtcgaatag cttcacgtta ccgtagccgc ccccattgag catgacttgc attaacacag
      721 ccatatcatg ggtgtcagaa aacagtccgg cgtgtcctga aacgccgccc attgagtacc
      781 aggctttttc gtcatgcacc tggccccata gtgtattggt gcgaatattg gggaaatgaa
      841 tcacgccgtc acgcgtgttg ccgtgtagtt ccgttgcggc gatttgcggc ggcgtgaagc
      901 ctttcatcag cgggttaaag acggtatgtt ttaatccgag cggtttataa atggtggttt
      961 cgacgtagcg atctaatggc attgccgtta tcgattcaat gataaaacca agaatcatat
     1021 aatccacgtc gctgtagata tgcttcgacc caggttgata ttccagcggt gtctttttaa
     1081 tcatctccag agtagtgctt ttactctgtg aaaataattt accggcgacg tttttattgg
     1141 gatattgtgg gtcggcagga aagcccgcga cgtgatgaag aatatcaata atgcggagtt
     1201 tatctttgcc ttttatttta tccccaggca tatccttaaa gccggggata tattttgata
     1261 ccaaatcatt gacatctatt tttccttcat acaccagttt ttgcaatgca aagttagtgg
     1321 catacatttt tgtgtttgaa gccaggtcat acatcgtgtt agtggtcgcc cgaatgggat
     1381 gggctaacag cgtggaaccg tcatattttt tggcatagcc ccaggctttt tgtagaacaa
     1441 tatgattatc ttttatcacc agaagattga tgctgggata tccggcatca atttgatttt
     1501 gaatccagcc atcaagtcgg tgaagttttt ggctatcaaa ccccacctga tcagggctcg
     1561 cggtggtcaa taccggatac tcaacggcaa aagctgaaag ggaaaacgtc agtagaaccg
     1621 tcgcaacgag agtaaatttc atgatgattc cctcagtctc actccggccg tcaaatcata
     1681 tcgcgagcat ggactctgcg gcccggagaa gcagaatgtg gtcatggcag tgacagaaaa
     1741 atatggctgt acatccgttc agtcggcatt aaggattaac ccttcagcag acaaaaccga
     1801 cctcacggcg taatattaat gctcttttta caccctggag ccagcatgtc gcaaaccatt
     1861 acgcttatta aggataaaat tctttctgat aattatttta ctctgcgcaa cattacctat
     1921 gacctgaccc gtcgtaatgg cgaggttatc cgtcacaagc gtgaggttta cgatcgcggg
     1981 aatggcgcaa ccattctgct ttacaactca actaaaaaaa ccgtggttct ggttcgccag
     2041 tttcgcgtgg cgacatgggt caatggtaat caagacggta tgttaattga aacctgcgct
     2101 ggcctgcttg ataacgacga gccggaggtc tgtatccgta aagaggccat tgaagagaca
     2161 gggtatgacg ttggtgaggt acgcaagata tttgagctgt atatgtcgcc aggcggcgtc
     2221 acggagctga ttcatttctt cattgccgaa tatcatgata gcgagcgtgc cagcatcggc
     2281 ggcggcgtgg aggacgaaga gattgaggtg cttgaactac cgttttcccg ggcgctggaa
     2341 atggtgcgct caggcgagat tcgggacggt aagaccgtgt tattgcttaa ctatttacag
     2401 acgtctcatc taatggactg aaaaaaaaga aatatatttc tttacacaaa aaagaccaat
     2461 ccgataaatc tgattgagaa ccctgaggcg cgcaaggaag ataccgcctg agctgtgttg
     2521 ttctgaatct ggggttgttc cgttcatgcg ctaccgcgtt attctttttt gtctgtttgg
     2581 cctgttgccg gtccagctac tgtgggctgc gccagcgcaa cggacttttt ccgactggca
     2641 ggtcacctgc aataaccaaa atttttgcgt agcgcgcaat actggcgaac atcatgggct
     2701 ggtgatgaca ttaagccgca gcgccggggc gcgtaccgat gcggtactgc gtatcgaccg
     2761 cggcggtttg gcgccgcccg acgctaaaga agccgcaatt gcgcctcgct tattgctgga
     2821 tggcaaaccg ctttcgttca acagttcaca ctggcgcgtg tcgccctggc atctcatgac
     2881 cggcgatcct gccaccatca ccgcattttt acagacgatt caggatgcgc aggccatcac
     2941 cttaaaaaac ggcgttcaga cgctttcgct ggcgggatta aaagcggcat tactgtttat
     3001 cgacgcgcaa caaaaacgtg tgggcagcga aaccgcctgg attgaaaaag gaaacgaacc
     3061 gccgctcagc gtgcccccgg caccggcatt aaaggggatc gccgttatta atccaacgcc
     3121 cgtaccgctg agtgaggaag aacgcgacga tctgctggac tacgccgcat ggcgggtaaa
     3181 cggcattcgt tgttcgcttg acccgctgcg tcgcgagacg caggtcagcg cgttgacgga
     3241 tgataaagcg ttattgattg ttaactgcga agccggcgcc tataacacta ttgatctcgc
     3301 ctgggtagtt tcacgcaaaa aaacgctcgt ctcgcgcgcc gtacgtttgc ggctgccgtt
     3361 taatcgcggc gtcgaaagta atgacatgga gttgatgaac gccttctttg acgagaaaac
     3421 gcgcgagctg gtgacgttgg cgaaagggcg ggggttaacc gactgtggta tccagacgcg
     3481 ctggcgctat gatggcgatc gttttcgtct ggtacgttat gccgaagaac cgagctgcga
     3541 tagctggcac gggccggatg cctggcctac gctgtggatc acgcgttgaa tcctggttgt
     3601 tatccccttt tcagaatagg gatacaccta ttgaggtttc atttatggta tagagattgc
     3661 tacgttacgg taggattgtt actttacccg atagcctcac cacagcagga aatagtatga
     3721 aaataaataa tggccccgta ttatgccccc attgtggctg cctgagcgct tattatgaaa
     3781 tagatcggct ggcggcgata agagaaaaag tgaataaaga aggcggatca gcggcgtggg
     3841 attcaacatt gcaggcgcat aaaaaaaagg ccttttgcct gatgtgccat aaatccattg
     3901 atgaggtcgt catcgggcag tcagatgcgc ctgagtctac gaagtaattt tgcacagcct
     3961 acagaacagg tctgcagact gtgcaaagtc tgtgttgcta acgcccgcct tagcctttga
     4021 tgttcagcac ccggcgggct ttttccacaa tattttccac ggtaaagcca aaatacggga
     4081 acagtttgtc agccggggcg gattcaccgt atcccgtcat gccgataatt gcgcctttta
     4141 ggccaacata tttataccag tagtcggcta taccggcctc caccgcgacg cgggcggtta
     4201 cgtgcgccgg tagcactgat tcgcgatatg cctcgtcctg cgcatcgaaa atatccgttg
     4261 aaggcaacga caccacccga acgttatgcc cctcgccagt caatttttcc gccgcctgga
     4321 gggtaatttc catttccgat ccggtagcga tcagaatgat atccggcttg ccgccgctat
     4381 ctttcagaat ataaccgccg cgggcaatcg ctttcacctg ttccggcgtg cgttccacct
     4441 gcgccagatt ctgccgcgag agaatcaacg ccgtcggccc gtgctgacgt tcaatggcca
     4501 gcttccaacc gactgccgcc tcaacctgat cgcagggacg ccaggtgctg aagttaggcg
     4561 ttaagcgcag gctcgccagt tgttccatgg cctggtgcgt cgggccatct tcgcccaaac
     4621 cgatggagtc gtgggtatag accataatct gccgggcttt cattaaggcc gccatacgcg
     4681 ccgcgttacg cgcatattcg acaaacatca gaaacgtggc ggtatacggt acaaagccgc
     4741 cgtggtgggc gatgccgttg gcaatggcgg tcatgccgaa ttcgcgcacg ccatagtgga
     4801 tgtaattacc tgccggatcc tctttcaacg aggtcaaacc tttccagata gtcaggttgc
     4861 tcggcgccag atccgccgat ccgcccaaca gttccggcaa caggggacca taggcattga
     4921 gcgtattttg cgatgcttta cgggtggcga ttttggccgg attagcctgc aagtcgttaa
     4981 taaatttttg cgtggcggat tcccatgcct ccggcaatcc gccgctcatc cggcgggtaa
     5041 actccgcggc cagctcagga taagccttct cataagcagc aaacttttcc tgccactgct
     5101 gctgcgcttt ctcgcctttt tcacggccat cccacgcgcg gtaaatctct tttgggatct
     5161 caaacgccgg atgatgccat cccagcttct ggcgggtcag cgccacctct tcttcgccca
     5221 gcgccgcgcc gtgcgactcc tccttcccgg ctttattcgg cgagccaaaa cctatcaccg
     5281 tccgacagat aattagcgaa ggtttatctt ttacgctctg ggcttccaga atggcttttt
     5341 tcaccgcctc cggagcgtgc ccgtcaatgt catgcacgac atgccagtgg taggcttcaa
     5401 aacgtttggc tgtatcgtcg gtaaaccagc cttcggtttc gccatcaatg gagatgccgt
     5461 tgtgatcgta aaagccgatc agtttgccca gtcccagcgt accagccagc gaacacacct
     5521 catgcgagat cccctccatc agacagccgt cgcccataaa gacataggtg tagtggtcga
     5581 caatctcatg gtccggccgg ttgaactgtg cgcctaacgt acgctcggca atcgccagcc
     5641 cgacggcatt cgccagcccc tggcccagcg gcccggtggt ggtttcaacg ccaggcgtat
     5701 agccaatctc cgggtgacca ggcgttttag agtgcagttg acggaagttt tttagctcct
     5761 ccagcggcag gtcatacccg gttaaatgca gcagactata gagcagcatg gaggcgtgac
     5821 tgttggaaag gataaaacga tcacggtcat accaggtcgg atcggtgggg ttatgtttaa
     5881 gaaaatcgtt ccatagcact tcagcgatat ccgccatccc catcggcgcg ccggggtgcc
     5941 cggaattggc tttttgaacg gcatccatgc tcagcgcacg aatcgcattg gcaaggtctt
     6001 tacgggacat aaatcactcc atgcaaggtt tatagtttgg cggcaagcag gtcttccagt
     6061 ttgcgctggt caacggcgaa aaggcggata ccttccgaca gcttctctac ggccatcgcg
     6121 tcctgattat gttcccagcg gaactccgct tccgtcattg gcgtaggacg gtggaacatc
     6181 tgcgaggaag gcaccagttt acggatcacc ggttcttctt tttctttcag ctctttaagc
     6241 aggttagggg agatagtcag tcgatcgcag ccggttagcg cgaggatttg ctcagtacgg
     6301 cggaaacttg cacccatcac gatggtttca tagcgatgct gtttaaagta atcgtagata
     6361 ttgcgtaccg atttcacgcc gggatcttcc tccacgacat acggctccag cggactacgc
     6421 gcctgatacc agtcgtaaat tcggcccacg aacggagaga ttaaatagac gcccgcttcg
     6481 gcgcaggcgc gcgcctgggc aaaagagaac aacaacgtca ggttgcaatt aatgccttct
     6541 ttttcgagct gttcggcggc gcgaatacct tcccaggtcg cggcgagctt gatcagaatg
     6601 cgtgatttat caacatcctg ctgctggtag agatccacca gatggcgtgc tttctcgata
     6661 cttttttctt tatcgaacga taaccgcacg tcgacttcag tggagacgcg accgggaata
     6721 cttttcagta tttccgcgcc aaaattaacc gccagtttat cgctggctgc cgcaacctgc
     6781 tgttcctgcg taccgccgtg tttttttccc caggcaatcg catcctcaat caaatgacca
     6841 tactgctcaa gcccggcggc ttttaacagt aaagagggat ttgtcgtggc atcctgcggc
     6901 tggtagtggc ggatggactc gatgtcgccg ctgtcggcga cgacggtagt gaattgtttg
     6961 atgccgtcta gctggttcat aggaaatact ccttgaaaag taaagtgtta gatgagtgtg
     7021 ttgattcaca cttctgaaag attgatacac tacataacca aaaagcatag cagacaggca
     7081 tggtattgct ggtataagca ggtaacatgg ctgttataag ttgataacaa actcttgcgc
     7141 cgcgtcgtga tagtttgcag accttcaaag tttgtgttgc gcagtacggt gataatgtgc
     7201 ggcgcaccag gccgcgtcac tttttgaacg atacgtgaaa ggaacaacaa aatggatgag
     7261 cagttaaaac aaagcgccct tgatttccac gaatttccgg tacccggtaa aattcaggtt
     7321 tctccgacta agccccttgc cacccaacgc gatctggcgt tggcttactc gccaggcgtg
     7381 gcggcgccct gcctggaaat cgaaaaagat ccgctggcag cctacaaata caccgcgcgc
     7441 ggcaaccttg tcgcggtcat ttccaacggt acagcggtgc tggggttagg caacatcggc
     7501 gcgctggccg gcaagccggt catggaaggc aaaggcgttc tgtttaaaaa attcgccggc
     7561 atcgatgtgt ttgacattga agtcgatgag cttgatccgg acaaatttat caatgtggtc
     7621 gcagcgctgg agccgacctt tggcggcatt aacctcgaag acattaaagc gccggaatgt
     7681 ttctatattg agcagaaact gcgcgagcgc atgaacatcc cggttttcca tgacgatcag
     7741 cacggaacgg cgatcatcag tacggccgcc attcttaatg gcctgcgagt cgtagagaaa
     7801 aatatttccg acgtgcggat ggtcgtctcc ggcgcagggg cggcggcaat cgcttgtatg
     7861 aacctgctgg tcgcgttggg gatgcagaag cacaacatcg tggtgtgcga ctctaagggc
     7921 gttatttaca aaggccgtga gccgaatatg gcggagacca aagcggccta tgcggtagac
     7981 gacagcggca agcgcacgct ggatgaggtc attgacggcg cggatatttt cctcggctgt
     8041 tcaggcccga aagtgctgac tcaggagatg gtgaagaaaa tggcccgcgc gccaatgatt
     8101 ctggcgctgg ctaacccgga accggaaatt ctgccgccgc tggcgaaaga agtgcgtccg
     8161 gacgccatca tctgtaccgg tcgttccgac tatccgaacc aggtgaacaa cgtattgtgc
     8221 ttcccgttta tcttccgcgg cgcactggac gtcggcgcga cggcgatcaa cgaagagatg
     8281 aaactggcgg cggtccgtgc gattgccgag ctggcgcacg ccgaacagag cgaagtggtg
     8341 gcctcggcct atggcgatca ggacctgagc tttgggccgg aatacattat tccgaaaccg
     8401 tttgacccgc gtctgattgt caaaatcgct ccggcggtcg cgaaagcggc aatggattcc
     8461 ggcgtggcga cgcgcccgat tgctgacttt gatgcctata tcgataaact gaccgagttt
     8521 gtctacaaaa ctaacctgtt catgaagccg atcttctcgc aggcacgcaa agatccgaag
     8581 cgcgtagtgc tgccggaagg ggaagaggcg cgcgtgctgc acgcaaccca ggagttgata
     8641 accctggggc tggcgaagcc catcctgatc gggcgtccga gcgtgatcga aatgcgtatc
     8701 cagaaactgg ggttacagat caaagcgggc gttgatttcg agatcgtgaa taatgaatcc
     8761 gatccgcgct tcaaagagta ctggagcgag tattaccaga tcatgaagcg tcgcggggta
     8821 actcaggaac aggcgcagcg tgcgatgatc ggcaaccata cggccattgg cgcgatcatg
     8881 gtgcagcgtg gagaagcgga tgcgatgatc tgcggcacca tcggcgacta ccatgagcat
     8941 ttcagcgtcg tgaaagccgt ctttggctac cgtgacggcg tgcatacggc aggggcgatg
     9001 aacgccttac tgctgccaag cggcaacact tttatcgccg atacttatgt taacgaagat
     9061 cccacgccgg aacagttggc ggagatcgcc gtaatggcgg cggaaaccgt tcgccgcttt
     9121 ggtattgagc cgaaagtcgc gctgttgtcg cactctaact ttggttcctc aaattcgctg
     9181 tccgccagca aaatgcgcga aacccttgag cgggtacgcg aacgagcgcc cgatctgatg
     9241 attgacggtg agatgcacgg tgatgcggcg ttggtggaaa gtattcgtaa tgaccggatg
     9301 ccggatagtc cgctgaaggg agccgccaat attctggtga tgccgaatat ggaagccgcc
     9361 cgcattagtt acaacttact ccgcgtctcc agttccgaag gcgtcacggt cggcccggtc
     9421 ctgatgggcg tgtctaaacc ggtacatgta ttaacgccga tcgcctctgt acgccgtatc
     9481 gtgaatatgg tggcgttagc ggtagttgaa gcgcaaacca cgccgcttta ataacgcatt
     9541 actctctctt ctggcgcagg ttctcctgcg
//
LOCUS       DAJVSD010000175         9517 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.175, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000175 DAJVSD010000000
VERSION     DAJVSD010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9517)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9517)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9517
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.175"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            80..1045
                     /gene="dusB"
                     /locus_tag="OQP62_003267"
     CDS             80..1045
                     /gene="dusB"
                     /locus_tag="OQP62_003267"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008785970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HCS1722737.1"
                     /translation="MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSS
                     NPQVWESDKSRLRMVHVDEPGIRTVQIAGSDPVEMADAARINVESGAQIIDINMGCPA
                     KKVNRKLAGSALLQYPDLVKSILIGVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAED
                     CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPIIANGDITNPHKARAVLDYTGA
                     DALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCTHVRELHDFYGQAKGY
                     RIARKHVSWYLQEHAPDDQFRRTFNAIEDASEQLEALEAYFENFA"
     gene            1071..1367
                     /gene="fis"
                     /locus_tag="OQP62_003268"
     CDS             1071..1367
                     /gene="fis"
                     /locus_tag="OQP62_003268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001465625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator Fis"
                     /protein_id="HCS1722738.1"
                     /translation="MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNG
                     QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN"
     gene            1453..2337
                     /gene="yhdJ"
                     /locus_tag="OQP62_003269"
     CDS             1453..2337
                     /gene="yhdJ"
                     /locus_tag="OQP62_003269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine-specific DNA-methyltransferase"
                     /protein_id="HCS1722739.1"
                     /translation="MKAECEPQYFGDESKKIIHGDALTELKKLPSESIDLIFADPPYN
                     IGKDFDGMVESWDEASFLAWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTLF
                     TIKSRIVWSYDSSGVQAKKYFGSMYEPILMMVKNPKSYTFNRDAILVETTTGAKRALI
                     DYRKNPPQPYNQKKVPGNVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTV
                     LDPFAGSFTTGAVAAASGRKFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQ
                     NLSKKQRNVGINALSSEK"
     gene            2420..2584
                     /locus_tag="OQP62_003270"
     CDS             2420..2584
                     /locus_tag="OQP62_003270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2556 family protein"
                     /protein_id="HCS1722740.1"
                     /translation="MIRKYWWLVVFAVSVFLFDALLMQWIELMATEQDKCRNMDSVNP
                     LKLINCTDLE"
     gene            2735..4309
                     /locus_tag="OQP62_003271"
                     /pseudo
     CDS             2735..4309
                     /locus_tag="OQP62_003271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462298.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
     gene            4311..4736
                     /locus_tag="OQP62_003272"
                     /pseudo
     CDS             4311..4736
                     /locus_tag="OQP62_003272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462300.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
     gene            4748..7862
                     /locus_tag="OQP62_003273"
                     /pseudo
     CDS             4748..7862
                     /locus_tag="OQP62_003273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462301.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
     gene            8099..8320
                     /locus_tag="OQP62_003274"
     CDS             8099..8320
                     /locus_tag="OQP62_003274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722741.1"
                     /translation="MKRLIPVALLTTLLAGCAHDSPCVPVYDDQGRLVHTNTCMKGTT
                     QDNWETAGAIAGGAAAVAGLTMGIIALSK"
     gene            complement(9148..9263)
                     /gene="rrf"
                     /locus_tag="OQP62_003275"
     rRNA            complement(9148..9263)
                     /gene="rrf"
                     /locus_tag="OQP62_003275"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(9303..9378)
                     /locus_tag="OQP62_003276"
     tRNA            complement(9303..9378)
                     /locus_tag="OQP62_003276"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9343..9345),aa:Thr,seq:ggt)
BASE COUNT         2359 a         2350 c         2433 g         2375 t
ORIGIN      
        1 aaagtttggc ctttcatctc gtgcaaaaaa tgcgtaatat acgccgcctt gcagtcacag
       61 tatggtcatt tcttaactca tgcgcatcgg acaatatcag ctcagaaatc gcctgatcgc
      121 agcgcccatg gctggcatta ctgacagacc tttccggacg ctgtgctatg agatgggagc
      181 aggattgaca gtatccgaga tgatgtcttc taacccgcaa gtgtgggaaa gcgataaatc
      241 tcgtttacgg atggtgcacg ttgatgagcc aggaattcgc acggtgcaaa ttgccggtag
      301 cgaccctgtt gagatggccg atgccgcacg tattaacgtg gaaagcggcg cccagattat
      361 tgatatcaat atggggtgcc cggcgaagaa agtgaatcgt aagctggcag gttcagccct
      421 cttgcagtac ccggatttag tgaagtctat actcatcggg gtcgtaaacg cggtggacgt
      481 tcctgtgact ctcaagattc gcaccggctg ggcgccggaa caccgtaact gcgtagagat
      541 tgcccaactg gctgaagatt gtggtattca ggccctgacc atccatggcc gcacccgcgc
      601 ctgtttgttc aacggagaag ctgaatacga cagtattcgg gcagttaagc agaaagtttc
      661 cattccgatt atcgcgaatg gcgacattac taacccgcat aaagccagag ctgttctcga
      721 ctatacaggg gcggatgccc tgatgatagg ccgcgcagct cagggaagac cctggatctt
      781 tcgggaaatc cagcattatc tggacactgg ggagctgctt ccgccgctgc cgctggcaga
      841 ggtaaagcgc ttgctttgca cgcatgttcg ggaactgcat gacttttacg gtcaggcaaa
      901 agggtaccga atcgcgcgta aacacgtctc ctggtatctc caggaacacg ctccagacga
      961 ccagtttcgg cgcacattca acgctattga ggacgccagc gaacagctgg aggcgttgga
     1021 ggcatacttc gaaaattttg cgtaaacaga aataaagagc tgacagaact atgttcgaac
     1081 aacgcgtaaa ttctgacgta ctgaccgttt ctaccgttaa ctctcaggat caggtaaccc
     1141 aaaaacccct gcgtgactcg gttaaacagg cactgaagaa ctattttgct caactgaatg
     1201 gtcaggacgt taatgacctg tatgagctgg tactggctga agtagaacag cccctgttgg
     1261 acatggtgat gcaatacacc cgtggtaacc agacccgtgc tgctctgatg atgggcatca
     1321 accgtggtac gctgcgtaaa aaattaaaaa aatacggcat gaactaattt cgattagcta
     1381 actgcttgtt taaaaaggcg ctactcggca tggggaagcg ccttttttat acgcattaca
     1441 tggaatttgg tcatgaaagc ggaatgtgaa cctcagtact ttggcgatga atcgaagaag
     1501 attattcacg gtgacgcgct aacagaactt aaaaaactgc cttctgaaag cattgactta
     1561 atttttgccg atccgcctta caatatcgga aaagatttcg acggtatggt ggaatcctgg
     1621 gacgaagcgt cttttctggc ctggctgtat gaatgcattg acgagtgcca ccgcgtactg
     1681 aagaaacacg gcaccatgta catcatgaat agcacagaaa atatgccgta tatcgatctc
     1741 aaatgccgaa cgctttttac catcaaaagc cgtatcgtct ggtcctatga tagttccggg
     1801 gtgcaggcga aaaaatactt tggttctatg tatgaaccga tcctgatgat ggtaaaaaac
     1861 ccgaaaagct atacctttaa ccgtgacgcg attctggtcg agaccactac gggcgctaag
     1921 cgcgcgctaa tcgattatcg aaaaaacccg ccccaaccat acaatcagaa aaaagtgccg
     1981 ggcaacgtct ggtcatttcc tcgcgtacgt tatctgatgg atgaatatga aaaccatcct
     2041 acgcaaaagc ccagcgcgct gttaaaacgg atcatactgg cctcttctaa cccgagcgat
     2101 accgtattgg accctttcgc gggcagtttc accacaggcg ctgtcgcagc ggcgtcaggt
     2161 cgtaagttta tcggtattga actcaataat gagtacgtaa aaatggggct cagaagattg
     2221 agcgtcactt cgcattattc agaaaatgaa cttgcaaaag tcaaaaagag aaaaacacaa
     2281 aacctgtcca aaaagcagcg aaatgtcggg ataaacgcgc tatcttcaga gaagtaaaag
     2341 cattgtaagt ccgcttttca gcgtcaaaat ttcatgtata ttcccagcac gcatgggcat
     2401 gaatacacag gatttgacga tgatacgtaa gtattggtgg ctggttgttt ttgccgtctc
     2461 cgtttttctt tttgatgcgc ttttgatgca atggatcgaa ttgatggcga ctgaacagga
     2521 taagtgccga aacatggatt cggttaaccc tcttaaattg atcaattgta ccgatctgga
     2581 gtagcgaatc gggcgattta acctatgatt atttatcacc cggatttctt ttatccctta
     2641 taaaaacagg gaattaaaac acgttgagga taaaagaagg ggtgatactg tctcgtcctg
     2701 ttcttttcct gcataaccaa tgagctaatg atacatgccg gttagtgagt acaaccacat
     2761 ccttgtggcg gtttcatttg ctgtcgctat ttttgcgtcc tataccgcat taaatatggc
     2821 cggacgcgta gccggaagcg cccgatcaaa cgccagaata tggctaatgg gcggcggctt
     2881 cgcgctgggc gtcggtattt gggagatgca ttttgtcggg atgctggcga tggatcacgc
     2941 gatgaacatg cgcttcgatc cgttcctcac cggcctctcc atgctgatcg cgatcggctc
     3001 ctccctgttt gcgctatggc tggttagcgc tgaaaaactg cgcctgcgcc gtttactgcc
     3061 gggcgcgctg gtgatgggac tgggcatcag cgcaatgcat tataccggga tggcggcgct
     3121 gcaatttgct tccattatcg tttggaatag cgcgtgggtt gccctctcta tcattatcgc
     3181 gctactggcg tcctgcggcg cgctgtggct cacgttccgc ctgcgtaatg agggaacaga
     3241 tgtcgccctg aggcgagcag gcgccgcggt attaatgggg atagctatcg ccggcatgca
     3301 ttacgccggc atgaaggccg cacactttcc ccaaaactgg ccgatggaac atcgtggcgt
     3361 cgatagcaac tggctggctg ttcttgtcag cgtggtcgcg ctgactatcc tgggtattac
     3421 tctgctggtt tctttatttg acgcccggct tcaggcccgt accgcactac ttgcctcttc
     3481 gctggcgcag gcgaaccagg aactggcgca gttggcgctg catgatacgc tcacccgttt
     3541 accaaaccgg gtactccttg aggatcgtct ggaacaggcc atcagcaaag cgaatcggga
     3601 aagcacgtct ttcgcgctac tgtttatgga tctggatggc tttaaagccg ttaatgacgc
     3661 ttatggtcat gatattggcg ataagctact ggtggcggtc acgcatcgtc tgaaccaacc
     3721 gctgagcggg cagtttaccc tggcgcggat tggcggcgac gaatttgtgc tgcttgcgga
     3781 agtcagcgcg cctgacgaag cggcttccct tgccagcgcg ctggtacatt cgatagatgc
     3841 gccctttacg atagatccgt acgaactggt tgtcaccctt agcgtgggaa tagcgctcta
     3901 tccgctggac ggaaaaaacg aacgggaact gatgttcaac gccgatgccg cgatgtacca
     3961 cacgaagcat acggggcgta acggatacca tttctttcag ccatcaatga atatgctggc
     4021 gcaaacccaa cttcagctaa tgaatgacct gtggctggcg ctggaaagac aagagctcag
     4081 gctggtgtat cagcctaaat ttcaggctcc tgccggcccc attgtaggat ttgaggccct
     4141 gttgcgctgg tatcatccaa aacaaggcgt actgaatcct gaccagtttt taccgctggc
     4201 ggaaaaaacg ggtcttatcg tcactatcgg tagctgggtg atagacgagg cgtgtcgaca
     4261 gctccgcgag tggcacttac agggatacgc cttatggtca gtggcggtaa ctggtaatgg
     4321 aaaatggtca ggtctacccg attaaaggca cgctgcaatt ttccgacgtt accgtagatg
     4381 aaagcaccgg ctctatcacg ctcagggcgg tgttccctaa cccgcaacac agtctgcttc
     4441 ccggtatgtt tgttcgcgcc cgcatcgatg aaggcgtcca gcccaatgcc atccttgtcc
     4501 cccagcaggg cgtgacccgc acgccgcgcg gcgacgcaat ggtgatggtg gttaacgata
     4561 aaagtcaggt cgaagcccgc aatgtcgtgg cgacgcaggc tattggcgat aaatggctca
     4621 tcagcgaagg gttaaaaccg ggcgataagg tcatcgtcag cggcttacaa aaagcgcgac
     4681 cgggcgtcca ggtgaaagcc actaccgatg ctcctgcagc gaaaacggcg caataaggta
     4741 accgtacatg gcaaactttt ttattagacg tcctattttc gcctgggttc tggccattat
     4801 cctgatgatg gctggcgcac tggcaataat gcaacttccc gttgcgcagt atccaaccat
     4861 tgcgccgcca gcggtttcta tttctgcaac ctatcctggc gcggatgcgc agacggtaca
     4921 ggatacggtt actcaggtta tcgaacaaaa tatgaacggt atcgataacc tgatgtatat
     4981 gtcctctacc agcgactctg ctggtagcgt gaccatcact ctgaccttcc agtccggaac
     5041 cgatccggat atcgcgcagg ttcaggtgca aaataaattg cagctcgcca cgcctttact
     5101 gccgcaagaa gtccagcagc aggggattag cgttgaaaaa tccagcagca gctttttgat
     5161 ggtcgccggg ttcgtctcgg ataatccgaa cactacccag gacgacatct ctgactatgt
     5221 cgcctctaac attaaggatt ctatcagccg tctgaacggc gtgggcgacg ttcagctatt
     5281 tggcgcacag tacgccatgc gtatctggct ggatgcgaat ctgctaaata aataccagct
     5341 cacgccagtt gacgtcatca accagttaaa agtacagaac gaccagattg cggcaggcca
     5401 actgggcggt acgccagcat taccgggcca gcagcttaac gcctcaatca tcgcccaaac
     5461 gcgtctgaaa gatccggaag agttcggcaa agttacgttg cgcgtcaata ccgacggctc
     5521 tgtcgtccat ctcaaagatg tcgcgcgtat tgagcttggc ggtgaaaact ataacgttgt
     5581 agcgcgcatt aacggtaaac cggcctccgg tctcggtatt aaactggcga ccggcgctaa
     5641 cgcgctggat accgcaaccg caatcaaagc gaaactggcg gaactgcagc ctttcttccc
     5701 tcagggaatg aaggtggttt atccttatga cactacgccc ttcgtaaaaa tatctatcca
     5761 cgaagtggta aaaacgctat ttgaagcgat tattctggtg ttcctggtaa tgtatctgtt
     5821 cttacagaat atccgggcaa ccctgattcc taccatcgct gttcctgtcg tgttgctagg
     5881 cacttttgcg gtactcgccg cctttggcta ttccatcaat accctgacga tgttcggcat
     5941 ggtactggcg atagggctgc tggttgacgg tgcgatagtg gtcgtagaaa acgttgaacg
     6001 tgtaatgatg gaggataacc tttctcccag agaggcgacg gaaaaatcca tgtcgcagat
     6061 ccagggagcg ctggtcggta tcgcgatggt actgtctgcg gtatttatcc cgatggcctt
     6121 ttttggcggc tcgaccgggg caatttatcg ccagttctct attactattg tttcagcaat
     6181 ggcgctatcc gttctggttg cgttgattct gacgccagcg ctatgcgcta cgctgcttaa
     6241 acccgtatct gctgaacatc acgagaaaaa aagcggcttc tttggctggt tcaataccag
     6301 gtttgaccac agcgttaacc actatactaa cagcgtaagc ggtatcgtgc gtaatacggg
     6361 tcgctatctc attatctatc tacttattgt agtcggaatg gcggttctgt ttttacgcct
     6421 cccgacctcc ttcctgccgg aagaagatca gggggtattc ctgactatga ttcagctccc
     6481 ctctggcgct acgcaagaac gtacgcagaa agtgctggat caagtcactc attactacct
     6541 gaataatgaa aaagcgaacg tcgaaagcgt gtttaccgta aacggcttta gctttagcgg
     6601 tcagggacaa aactcaggga tggcatttgt cagccttaaa ccctgggaag agcgtaacgg
     6661 tgaagaaaat agcgtcgaag ccgttatcgc cagagcgaca cgcgccttta gccagattcg
     6721 cgacgggttg gtgttcccct tcaacatgcc ggcaattgtc gagttaggta ccgcgacagg
     6781 tttcgacttc gaactgattg atcagggagg actcggtcat gatgcgttaa caaaagcgcg
     6841 taatcaactc ctgggtatgg tcgcgaagca tcctgatcta ttagtgcgcg tacgcccgaa
     6901 cgggctggaa gacacgccac agttcaagct ggatgtcgat caagaaaaag cacaggcgct
     6961 cggcgtttcg ctgtctgata tcaacgaaac catctccgcg gcgttgggcg gctattacgt
     7021 taacgacttt atcgatcgcg gacgagtgaa aaaagtatac gttcaggctg acgctcagtt
     7081 ccgtatgctg ccggaagata tcaacaatct ttatgtacgc agcgccaatg gcgagatggt
     7141 gcccttctct acctttagct cagcacggtg gatttatggt tcgccacgcc tggaacgcta
     7201 taacgggatg ccgtcaatgg aactgctcgg tgaagcagcg cccggacgaa gtaccggtga
     7261 agccatgtcg ttaatggaaa acctggcttc acagctgcca aacggtattg gctatgactg
     7321 gacaggtatg tcgtatcagg aacggttgtc aggtaaccag gcgccggcgc tgtacgcaat
     7381 ctcactcatt gtcgttttcc tctgccttgc cgctctgtat gaaagctggt caattccgtt
     7441 ctcggtaatg ctggtcgtac cgctccggcg tggttggcgc tctgcttgca gcgtcattgc
     7501 gcggcctgaa taatgacgtt tacttccagg ttggcttgtt aaccactatt ggcctttctg
     7561 ctaaaaacgc catcctgatt gttgagttcg ccaaagatct catggaaaaa gaaggacgtg
     7621 gattgattga agcgacgctg gaagcatccc gtatgcgttt acgtcctatt ctaatgacct
     7681 cgctggcctt tattctcggg gtaatgccgt tagttatcag tcgtggcgca ggtagtgggg
     7741 cacagaacgc agtaggcaca ggggttatgg ggggaatgtt aaccgcaacc ttattagcta
     7801 tcttcttcgt gccagtattc ttcgttgttg taaaacgccg atttaatcgc catcatgatt
     7861 aaccagtaaa cagaggcgtc ttcggacgcc ttttaaacgg tacgtcttta tctccgctat
     7921 tcccccctct ccgcttacct ctgcattctc catagttttt acaattcaca tgaattgaga
     7981 tgattcctca tgtcagccat tttttctgtg gtggtaaaat aactctcgtt ttcacagcgg
     8041 ttagagccag catttacgtt gctgtacttt gcgaaacgct gattaatgag gtaacaccat
     8101 gaaaagacta attccagttg cattgcttac caccttattg gcaggttgtg cacatgattc
     8161 tccctgcgta ccggtttatg acgatcaagg gcggctggtt cataccaata catgtatgaa
     8221 aggtacaacg caggataact gggagacagc aggcgctatc gctggcggcg ctgcggcggt
     8281 agcagggttg acgatgggta tcattgcgct ttctaaatga tacatgcagg cgcggcaatg
     8341 ccgcgctttc agtaataata taaaggtcgt aaggatactc agcgacgtaa tctattcagc
     8401 ctatccccga aagttaacac gataaaacgc tctcttttct tactcgccca tcccgatggt
     8461 atttattcta ttccttgtcc gatgcagaca aaattgtagc ttgatagcat cgtaagccgc
     8521 attacaaaca ggctttatac agtaagactt agagcgtggt cattaggcgt aattattaca
     8581 gacagtctgg atataaaccg gaacatacac gtaatacatg aggattttga gcactgtccc
     8641 agggccaaac tggcaaataa aatagcctaa tgggccagat tcttagtcct cagcgaatat
     8701 ctctattgct tattagaggc gtaagtaaaa gccgtttgta catctacttc agcacggttc
     8761 acattcgatg gttcaggcgg atatatggcg ggaaatcacg tttactaaaa cggtttttat
     8821 ccactctacg aagatgttat atacccaaaa taattcgagt tgcttaaagg cggcaaggga
     8881 gtgagtcccc aggagcatag ataactatgt gactggggtg agcgacaaat ctgccgggag
     8941 cagatttaaa cgtcgcgtgc gacggcccgt cagggcgagg cccatgaatg ggccgagtaa
     9001 tccgtagcca acacataagc gacttgaagt atgaaaggta taaaccaaat ataaaacgcg
     9061 tcggcgtcat tatccgataa ctttttccat agagagataa atgcaaaaag gcccaatctt
     9121 tcgattgggc cttttgcttt atttgatgtc tggcagttcc ctactctcgc atggggagac
     9181 cccacactac catcggcgct acggcgtttc acttctgagt tcggcatggg gtcaggtggg
     9241 accaccgcgc tactgccgcc agacaaattc tttttcaaat gccgaacttt aaccgtatta
     9301 agtggtgctg atacccagag tcgaactggg gacctcaccc ttaccaaggg tgcgctctac
     9361 caactgagcc atatcagcac actaaatttg atgcctggca gtttatgaat cacttcgtga
     9421 ttcacccttc gggccgttgc ttcgcaacgt tcaaaagatt cgcttttgtc ctactctctg
     9481 tcgagtagtg aactgccccg aaagttaatg ccatact
//
LOCUS       DAJVSD010000176         9442 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.176, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000176 DAJVSD010000000
VERSION     DAJVSD010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9442)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9442)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9442
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.176"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            61..1350
                     /locus_tag="OQP62_003277"
     CDS             61..1350
                     /locus_tag="OQP62_003277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate degradation bifunctional
                     isomerase/decarboxylase"
                     /protein_id="HCS1722742.1"
                     /translation="MKGTVFAVALNHRSQLDAWQEAFSQPPYNAPPKTAVWFIKPRNT
                     VIRHGEPIPYPQGEKVLSGATVALIVGKTASRIRPEAAADYIAGYALANEVSLPEESF
                     YRPAIKAKCRDGFCPLGEMAPLSDVDNLTIITEINGREADHWNTADLQRSAAQLLSAL
                     SEFATLNPGDAILLGTPQNRVALRPGDRVRILAKGLPALENPVVAEDEFARHQTFTWP
                     LSATGTLFALGLNYADHASELAFTPPKEPLVFIKAPNTFTEHHQTSVRPNNVEYMHYE
                     AELVVVIGKTARKVSEAEAMEYVAGYTVCNDYAIRDYLENYYRPNLRVKSRDGLTPIG
                     PWIVDKEAVSDPHNLTLRTFVNGELRQEGTTADLIFSIPFLISYLSEFMTLQPGDMIA
                     TGTPKGLSDVVPGDEVVVEVEGVGRLVNRIVSEESAK"
     gene            1347..2812
                     /gene="hpaE"
                     /locus_tag="OQP62_003278"
                     /pseudo
     CDS             1347..2812
                     /gene="hpaE"
                     /locus_tag="OQP62_003278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460075.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate semialdehyde
                     dehydrogenase"
     gene            2814..3665
                     /gene="hpaD"
                     /locus_tag="OQP62_003279"
     CDS             2814..3665
                     /gene="hpaD"
                     /locus_tag="OQP62_003279"
                     /EC_number="1.13.11.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxyphenylacetate 2,3-dioxygenase"
                     /protein_id="HCS1722743.1"
                     /translation="MGKLALAAKITHVPSMYLSELPGKNHGCRQAAIDGHIEIGKRCR
                     EMGVDTIIVFDTHWLVNSAYHINCADHFQGVYTSNELPHFIRDMTYDYDGNPALGHLI
                     ADEAVKLGVRAKAHNIPSLKLEYGTLVPMRYMNSDKHFKVVSISAFCTVHDFADSRKL
                     GEAILKAIEKYDGTVAVFASGSLSHRFIDDQRAEEGMNSYTREFDHQMDERVVKLWRE
                     GKFKEFCTMLPEYADYCYGEGNMHDTVMLLGMLGWDKYDGKVEFITDLFASSGTGQVN
                     AVFPLPA"
     gene            3675..4055
                     /locus_tag="OQP62_003280"
     CDS             3675..4055
                     /locus_tag="OQP62_003280"
                     /EC_number="5.3.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate
                     Delta-isomerase"
                     /protein_id="HCS1722744.1"
                     /translation="MPHFIAECTENIREQADLPSLFSKVNEALAATGIFPIGGIRSRA
                     HWLDTWQMADGKHDYAFVHMTLKIGAGRSLESRQEVGEMLFGLIKAHFADLMENRYLA
                     LSFEIAELHPTLNYKQNNVHALFK"
     gene            4199..5002
                     /gene="hpaH"
                     /locus_tag="OQP62_003281"
     CDS             4199..5002
                     /gene="hpaH"
                     /locus_tag="OQP62_003281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-hepta-3-ene-1,7-dioic acid hydratase"
                     /protein_id="HCS1722745.1"
                     /translation="MLDKQTHTLIAQRLNQAEKQREQIRAVSLDYPNITIEDAYAVQR
                     EWVNIKIAEGRTLKGHKIGLTSKAMQASSQISEPDYGALLDDMFFHDGGDIPTDRFIV
                     PRIEVELAFVLAKPLRGPHCTLFDVYNATDYVIPALELIDARSHNIDPETQRPRKVFD
                     TISDNAANAGVILGGRPIKPDELDLRWISALLYRNGVIEETGVAAGVLNHPANGVAWL
                     ANKLAPYDVQLEAGQIILGGSFTRPVPARKGDTFHVDYGNMGAISCRFV"
     gene            5013..5804
                     /gene="hpaI"
                     /locus_tag="OQP62_003282"
     CDS             5013..5804
                     /gene="hpaI"
                     /locus_tag="OQP62_003282"
                     /EC_number="4.1.2.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-2-oxoheptanedioate aldolase"
                     /protein_id="HCS1722746.1"
                     /translation="MKNAFKDALKAGRPQIGLWLGLANSYSAELLAGAGFDWLLIDGE
                     HAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGAQTLLIPMVQNADEAR
                     NAVAATRYPPAGIRGVGSALARASRWNRIPDYLHQANDAMCVLVQIETREAMSNLASI
                     LDVDGIDGVFIGPADLSADMGFAGNPQHPEVQAAIENAIVQIRAAGKAPGILMANEAL
                     AKRYLELGALFVAVGVDTTLLARGAEALAARFGAEKKLSGASGVY"
     gene            5876..7252
                     /gene="hpaX"
                     /locus_tag="OQP62_003283"
     CDS             5876..7252
                     /gene="hpaX"
                     /locus_tag="OQP62_003283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate permease"
                     /protein_id="HCS1722747.1"
                     /translation="MSDTSSALPESPESVGSHNALSTGQQTVINKLFRRLIVFLFVLF
                     IFSFLDRINIGFAGLTMGQDLGLSATMFGLATTLFYATYVIFGIPSNVMLSIVGARRW
                     IATIMVLWGIASTATMFAVGPKSLYVLRMLVGITEAGFLPGILLYLTYWFPAFFRARA
                     NALFMIAMPATTALGSIVSGYILSLDGIFNLHGWQWLFLLEGFPSVLLGIMVWFYLDD
                     TPAKAKWLTAEDKKCLQEMMDNDRLTLVQPEGAISHNAMQQRSLWREVFTPIVLMYTL
                     AYFCLTNTLSAISIWTPQILKSFNEGSSNITIGLLAAIPQICTVLGMIYWSRHSDKHQ
                     ERKHHTALPFLFAAAGWLLASATDRNLIQLLGIVMASTGSFSAMAIFWTTPDQSISLR
                     ARAIGIAVINATGNIGSALSPVMIGWLKDITGSFNSGLWFVASLLVVGAAIIWLIPMK
                     ASRPRATP"
     gene            7262..8158
                     /gene="hpaA"
                     /locus_tag="OQP62_003284"
     CDS             7262..8158
                     /gene="hpaA"
                     /locus_tag="OQP62_003284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate catabolism regulatory
                     protein HpaA"
                     /protein_id="HCS1722748.1"
                     /translation="MCQRAIANIDISKEYDESMGSNDVHYQSFARMADFFGRDMQAHR
                     HDQFFQMHFLDTGQIELQLDDHRYSVQAPLFVLTPPSVPHAFITESDSDGHVLTVREE
                     LVWPLLEVLYPGTREAFGLPGICLSLADKLNELAALKHYWQLIERESTEQLAGCEHTL
                     VLLAQAVFTLLLRNAKLDDHAATGMRGELKLFQRFTLLIDNHFHQHWTVPDYACELHI
                     TESRLTDICRRFANRPPKRLIFDRQLREAKRLLLFSDNAVNEIAWQLGFKDPAYFARF
                     FNRLAGCSPSQFRQREVPSFLN"
     gene            8172..9110
                     /locus_tag="OQP62_003285"
     CDS             8172..9110
                     /locus_tag="OQP62_003285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HCS1722749.1"
                     /translation="MMKKSVAMLAVCMLAQSHLAIAAGAPAPQEINIVLLGTKGGPSL
                     LNTARLPQATALTIGDKIWLIDAGYGASLQLVKNGIPLRNINTILLTHLHSDHILDYP
                     SLLMNAWASGLKDHTIQVYGPPGTQAMTKASWKVFDRDITLRMEEEGKPDPRNLVKAT
                     DIGQGVIYKDELVTISALKVPHSPFPDGEAFAYRFDTQGKRIVFSGDTSWFPPLATFA
                     QGADILVHEAVHVPSVAKLANSIGNGKTLAEAIASHHTTIEDVGKIAREAHVKKLVLS
                     HLVPATVADDVWQQEAMKNYPGPVIVGHDNMTISVP"
BASE COUNT         2153 a         2532 c         2672 g         2085 t
ORIGIN      
        1 tctaatcatt aatatgttaa tgaaatcaca gcccgttaaa tcggcctgag gagtttatgt
       61 atgaagggta ctgttttcgc cgttgcgtta aaccatcgca gccagcttga tgcctggcaa
      121 gaggctttct ctcagcctcc ctataatgcg ccgcctaaaa ccgcagtgtg gttcatcaag
      181 ccgcgtaata cggtgattcg tcacggcgaa cccattcctt atccgcaggg agaaaaggta
      241 ctgagcggcg cgacagtggc gctcattgtg gggaaaaccg ccagccggat acgccctgaa
      301 gcggcggcgg actatatcgc cgggtatgcg ctggctaacg aggtcagcct gccggaagag
      361 agcttttatc gcccggcgat taaagcgaaa tgtcgcgatg gcttttgccc gctgggtgaa
      421 atggcgccgc tgagtgatgt ggataatctc accattatca ctgaaatcaa cggacgagaa
      481 gcggaccact ggaatactgc cgatttacag cgtagcgccg cacaactgct tagcgcgtta
      541 agtgagttcg ctacacttaa ccctggcgat gcgatcttac ttggtacgcc gcagaatcgc
      601 gttgcgctgc gtcccggcga tcgggtgcgt attctggcga aaggtttacc cgcgctggaa
      661 aatccggttg tcgcagaaga tgaattcgcc cgccaccaga cgtttacgtg gccgctgtca
      721 gcgacgggaa cgttatttgc gctggggttg aactacgccg atcacgccag cgagctggca
      781 tttacgccgc cgaaagagcc gctggtattt atcaaagcgc caaacacctt taccgaacat
      841 caccaaacgt cggtgcgccc gaacaacgtc gaatatatgc actacgaagc cgagctggtc
      901 gtggtgattg gcaaaacggc gcgtaaggtg agcgaagccg aagccatgga gtatgtggcc
      961 ggttacaccg tctgtaacga ctacgcgatc cgcgactatc tggaaaacta ctaccgtccg
     1021 aatctgcggg taaaaagccg cgacggcctg acgccgatag gcccgtggat tgtggataaa
     1081 gaggcggttt ctgatccgca caacctgacg ttacgcacct ttgtcaacgg tgagctgcgg
     1141 caggaaggga cgaccgccga tctgatcttc agcatcccgt tcctgatttc ttatctgagc
     1201 gaatttatga cgttgcaacc gggcgacatg attgccaccg gtacgccgaa agggctgtcc
     1261 gatgtggtgc cgggggatga agttgtcgtt gaagtagaag gcgtgggtcg cctggttaac
     1321 cgaatcgtca gtgaggagag cgcaaaatga agaaaataaa tcattggatt aacggcaaaa
     1381 acgttgcagg taacgactac ttccagacca ctaacccggc gaccggtgat gtgctggcgg
     1441 aagtagcctc cggcggtgaa gcagaagtga accaggctgt cgcggcggca aaagaggcgt
     1501 tcccgaaatg ggccaacctg ccgatgaaag agcgcgcgcg cctgatgcgc cgccttggcg
     1561 acctgattga ccagcatgtg ccggaaatcg cggcgatgga aaccgccgac accggcctgc
     1621 ctattcacca gactaaaacg tgctgatccc gcgcgcctcg cataacttcg aattcttcgc
     1681 cgaagtgtgc cagcagatga acggcaagac ctatccggtt gacgataaaa tgctcaatta
     1741 tacgctggtg cagcccgtcg gcgtctgcgc gctggtgtcg ccgtggaacg tgccgtttat
     1801 gaccgcgact tggaaagttg cgccgtgcct ggcgctgggt aacaccgcgg tgctcaaaat
     1861 gtccgagctg tcgccgctga ctgccgacag gctgggcgag ctggcactgg aggcaggaat
     1921 tccggcaggc gtgctgaacg tggtgcaggg ctacggcgcg acggcgggcg atgcgctggt
     1981 acgccaccat gacgtgcgtg cggtgtcgtt taccggcggt accgccaccg gtcgcaatat
     2041 catgaaaaat gccgggctga aaaaatactc gatggagctg ggcggcaaat cgccggtgct
     2101 gatttttgaa gacgccgaca ttgagcgcgc gctggacgcc gcgctgttca ccatcttctc
     2161 gatcaacggc gaacgctgca ccgctgggtc gcgcatcttt atccagcaga gcatttaccc
     2221 tgagttcgtg aagcgctttg ccgaacgcgc gaatcgcctg cgtgtcggcg atccgaccga
     2281 cccgaacacc caggtcggcg cgctgattag ccaacagcac tgggagaaag tctccggtta
     2341 tatccgcctc ggcattgaag agggggcaac gctgctggcg ggcggtgcgg aaaaacccac
     2401 tgacctgcct gcgcatctga aaggcggtaa cttcctgcgc ccaaccgtgc tggccgatgt
     2461 cgacaaccgt atgcgcgttg cgcaggaaga gatctttggg ccggtcgcct gcctgctgcc
     2521 attcaaagac gaagcggaag ggttacgttt ggcgaacgat gtggaatacg gtctggcctc
     2581 ttatatctgg acccaggacg tgagcaaagt gttgcgcctg gcgcgtggga ttgaagccgg
     2641 catggtcttc gtcaacaccc agaacgtccg cgacctgcgc cagccgttcg gcggcgtgaa
     2701 agcctccggt accgggcgcg aaggcggcga atatagcttc gaagtgtttg cggaaatgaa
     2761 aaacgtctgc atctcaatgg gcgaccatcc tatcccaaaa tggggagttt gatatgggca
     2821 agttagcgtt agcagcaaaa attacccacg tgccgtcgat gtatctttct gaactgccag
     2881 gaaaaaatca cggttgtcgt caggcagcca ttgatgggca tattgaaatt ggcaagcgtt
     2941 gccgcgaaat gggcgttgac accattatcg tattcgacac ccactggctg gtgaatagcg
     3001 cttaccacat taattgtgcc gaccatttcc agggcgtcta taccagcaac gaattgccgc
     3061 actttattcg cgacatgacc tatgactatg acggtaatcc ggcgctcggc catctgatcg
     3121 ccgacgaggc ggtcaaactg ggcgtgcgcg ccaaagcgca caacatcccg agcctgaagc
     3181 tggagtatgg cacgctggtg ccgatgcgct acatgaacag cgacaagcac ttcaaagtgg
     3241 tctccatctc ggcgttctgc actgtgcatg attttgccga cagccgcaaa ctgggcgaag
     3301 ccattctcaa ggcgattgag aaatatgacg gtaccgtagc ggtattcgcc agtggttctc
     3361 tgtcgcaccg ttttattgac gaccaacggg cggaagaggg gatgaacagc tacacccgcg
     3421 agttcgatca tcaaatggac gagcgcgtgg tcaagctgtg gcgcgaaggc aaattcaagg
     3481 agttttgcac catgttgccg gagtacgccg actactgcta cggcgaaggc aacatgcacg
     3541 acacggtcat gctactggga atgctggggt gggacaaata cgacggcaag gtggagttca
     3601 tcaccgacct gttcgccagc tccggtaccg gccaggtaaa cgctgttttc ccgctgcctg
     3661 cgtaaggggg gtttatgccg cactttattg ctgaatgtac tgaaaatatt cgcgagcagg
     3721 ctgatttacc aagcctgttc agcaaggtaa acgaggcgct ggccgccacc gggattttcc
     3781 ccatcggcgg tatccgcagt cgcgcccact ggctggatac ctggcagatg gctgacggta
     3841 agcatgatta cgcgtttgtg catatgacgc tgaaaatcgg cgccgggcgc agcctggaga
     3901 gccgtcagga agtcggcgaa atgctgtttg ggctgattaa agcccacttc gccgacctga
     3961 tggagaaccg ctatctggcg ctgtcgtttg agattgccga gttacatcca acgctcaatt
     4021 acaaacaaaa caacgtacac gcgttattta aatagcacac tctttcgccc ggtggcgctg
     4081 cgctgaccgg gcctacaaaa aaacgatgca cgaagcagta ccgaaccgta ggccgggtaa
     4141 gacgcacccg cgtcgccacc cggcgcagca gcaccgaatg aggtaacagg aagcaactat
     4201 gctcgataaa cagacccata ccctgatcgc tcagcgactt aatcaggctg aaaaacagcg
     4261 tgaacagatt cgcgcagtgt cgctggatta tcccaacatc actattgaag atgcctatgc
     4321 cgtacagcgt gaatgggtca atatcaagat tgccgaaggg cgcacgctca aaggccacaa
     4381 aatcggcctg acctcaaaag cgatgcaggc cagctcgcaa atcagcgaac cggattacgg
     4441 cgcgctgctt gacgatatgt tcttccatga cggcggagat atccccaccg accgttttat
     4501 cgtcccgcgt attgaagtgg agctggcgtt cgtgctggcg aaaccgctgc gcggccctca
     4561 ctgcacgctg ttcgacgtct acaacgccac ggattatgtg attccggcgc tggaactgat
     4621 tgacgcccgc agccacaaca tcgacccgga aacccagcgc ccgcgcaaag tgttcgacac
     4681 catttccgac aacgccgcca acgccggggt gatcctcggt ggtcgcccca tcaaaccaga
     4741 cgagctggat ctgcgctgga tctccgcgct gctctatcgc aacggcgtga tcgaagaaac
     4801 cggcgtcgcc gcaggcgtgc tgaatcatcc ggccaacggc gtggcgtggc tggcgaacaa
     4861 gcttgccccc tacgatgtcc agcttgaagc cgggcagatc atcctcggcg gctcgttcac
     4921 ccgcccggtg ccggcgcgca agggcgacac cttccatgtc gattacggca acatgggcgc
     4981 gatcagttgc cggtttgtgt aaggaaaaaa cgatgaaaaa tgctttcaaa gacgcgttaa
     5041 aagcggggcg cccgcaaatc ggtttgtggc tggggcttgc caacagttac agcgctgaac
     5101 tgttagcggg cgccggcttc gactggctac tgattgacgg tgaacacgcg ccaaacaacg
     5161 tgcagacggt gttgacccag ttgcaggcga ttgcgcctta tcccagccag ccggtggtgc
     5221 gtccgtcatg gaacgatccg gtacagatta agcaactgct cgacgtcggc gcgcaaacgc
     5281 tgctgatacc gatggtgcag aatgccgatg aagcgcgaaa cgccgtggcg gctacgcgtt
     5341 atccgcctgc cggtattcgc ggcgtgggca gcgcgctggc gcgggcatcg cgctggaatc
     5401 gcattccgga ctatctccac caggccaacg acgccatgtg cgtactggtg cagattgaaa
     5461 cgcgtgaggc gatgagcaat ctggcgtcaa ttctcgacgt ggatggcatt gacggcgtgt
     5521 ttattggccc ggcggatctc agcgccgata tgggctttgc cggcaatccg cagcacccgg
     5581 aagtgcaggc ggcgattgag aacgccatcg tgcagatacg cgcggcgggg aaagcgccgg
     5641 ggattctgat ggccaatgaa gcactggcga aacgttatct ggaactgggg gcgctatttg
     5701 tcgccgtcgg cgttgacacc acgctgctgg cgcgcggagc ggaggcgctg gcggcgcgct
     5761 ttggcgcaga aaaaaaactg tccggtgcgt ccggcgtcta ttaagcctgg gccggtaagc
     5821 gcagcgctac cgggcaaccg tagtacccta caaaattccc atcagaggaa aaaaaatgag
     5881 cgacacatca tctgcacttc cggaaagccc cgagtctgtc ggttcgcaca acgcgctcag
     5941 cacgggtcaa caaaccgtca taaataaact gttccgccga ctgatcgtat ttttattcgt
     6001 gttgtttatc ttctcgtttt tagaccgtat caacatcggt tttgccgggt tgacgatggg
     6061 gcaggatctg gggttaagcg ccaccatgtt tggtcttgcc acgacgctgt tttacgccac
     6121 ctacgtcatt ttcggcattc ccagcaacgt gatgttgagc atcgtcggcg cccgccgctg
     6181 gattgcgacc attatggtgc tatggggcat tgcatctacc gccacgatgt tcgcggtggg
     6241 accgaaaagc ctgtatgtgc tgcgaatgct ggtgggcatt accgaagcgg gctttttgcc
     6301 aggaatattg ctctatttaa cctactggtt cccggcattt ttccgcgccc gcgccaacgc
     6361 attatttatg attgccatgc cggccactac cgcgttgggg tcaattgtct ccggctatat
     6421 tttatcgctg gacggcatat tcaatctgca tggatggcag tggttattcc tgttggaagg
     6481 atttccgtca gttttgttag gcattatggt ctggttttac ctggatgata ccccggcaaa
     6541 agccaaatgg ctgacggcag aggataaaaa atgtttgcag gagatgatgg ataatgatcg
     6601 cctgacgctg gttcagcctg agggggccat cagccataac gccatgcagc agcgtagcct
     6661 gtggcgcgaa gtattcacgc caattgtact gatgtatacg ctggcctatt tttgccttac
     6721 caatacgctt agcgccatta gtatctggac gccgcaaatc ctgaaaagtt ttaatgaagg
     6781 cagcagcaat atcaccatcg gcctgctggc ggcgatcccg cagatttgta ctgttctggg
     6841 catgatttac tggagccgcc attcggacaa acatcaggag cgtaaacacc acactgcgtt
     6901 accgttcctg tttgccgccg cgggctggct gctggcgtcg gcgaccgacc gtaacctgat
     6961 ccagctcctg gggatcgtga tggcatccac gggttccttt agcgcgatgg cgatcttctg
     7021 gaccacgccg gatcagtcga tcagtttacg cgccagggcg ataggcattg cggtcatcaa
     7081 tgccaccggc aatattggct ccgcgctcag cccggttatg attggctggc taaaagatat
     7141 cactggtagc ttcaatagcg gactctggtt tgtcgcttct ctgttagtcg tcggcgccgc
     7201 cattatctgg ctcattccca tgaaagcatc gcgtccgcgc gccacccctt gaggagaaac
     7261 tatgtgccaa cgtgcgatcg ccaatattga tatcagcaaa gagtatgacg aaagcatggg
     7321 cagtaacgat gtgcattatc agtcgtttgc tcgtatggcg gatttctttg gtcgtgatat
     7381 gcaggcgcat cgccacgacc agttttttca aatgcacttt cttgataccg ggcagattga
     7441 gctacagctc gacgatcatc gctattcggt gcaggcgccg ctatttgtgc taacgccgcc
     7501 ctcggtgccg catgctttta ttaccgaatc ggatagcgat ggtcatgttc tgacggtacg
     7561 cgaagagctg gtttggccgc tgctggaagt gctttatccc ggcaccagag aggccttcgg
     7621 cctgccggga atctgcctgt cgctggcgga taaactcaac gagctggcgg cgctcaaaca
     7681 ttactggcag ctaattgagc gggagtccac ggaacaactg gctggctgcg aacatacctt
     7741 ggtactactg gcgcaggcgg tatttacctt gctgttgcgt aatgcgaagc tggacgatca
     7801 tgccgcaacc gggatgcgcg gtgaactgaa actttttcag cgctttaccc tgttaattga
     7861 caaccacttc catcagcact ggacggtgcc cgattatgcc tgtgagttgc atattaccga
     7921 atctcgtttg accgatattt gccgacgttt tgctaatcgc ccgcctaaac gcctgatttt
     7981 tgatcggcaa ttacgcgagg cgaaacgact gctgcttttt tccgacaatg ctgtcaacga
     8041 gatcgcctgg caattaggtt ttaaagatcc ggcttatttc gcccgtttct ttaatcgcct
     8101 tgctggctgt tctccttcgc agtttcgcca acgtgaagtt ccttcttttc tcaactaaga
     8161 agagtaaaaa catgatgaaa aaaagcgtcg ctatgctggc ggtttgtatg ctggcgcaaa
     8221 gccaccttgc cattgctgcc ggtgctcctg cgcctcaaga gatcaacatt gttttactgg
     8281 gcaccaaagg cgggccttct ttgctcaata cagccagact accgcaagcg acggcgctca
     8341 ctatcggcga taagatatgg ctgatagatg ccggctacgg cgccagtctg caactggtga
     8401 aaaatggcat tccactgcgc aacatcaata ctattttgct cacccatctg cacagcgacc
     8461 acatactgga ttatccttcc ttgctgatga atgcctgggc aagtggcctg aaagaccata
     8521 ccatacaggt ttatggcccg ccgggaaccc aggcgatgac gaaggctagc tggaaggtct
     8581 ttgacaggga tatcacgtta cgcatggaag aagaggggaa acccgatccg cgcaacctgg
     8641 ttaaggcgac cgatatcggc cagggcgtca tctataaaga tgaactggtc acaataagcg
     8701 cgctgaaagt gcctcattcc cctttcccgg acggtgaagc gtttgcttac cgttttgata
     8761 ctcagggtaa gcgaatcgtc ttctctggcg atacgtcctg gtttcctccg cttgcaacgt
     8821 ttgcccaggg ggcggatatc ctggtacatg aggcggtaca tgtcccttcg gtagcaaaac
     8881 tggctaatag tattggcaac ggaaaaacgc tggctgaagc gattgcgtcg catcacacca
     8941 cgattgaaga tgtcggtaag attgctcgcg aggcccacgt gaaaaaactg gtgttaagtc
     9001 atctggtgcc tgcgacggtt gcggatgacg tctggcaaca ggaagccatg aaaaattacc
     9061 cgggccctgt cattgtcggt catgacaata tgacgataag cgtaccgtaa gcatcagggc
     9121 aggggtaaac caacgggctg acatcatgtc agcccgttat gcttttggcg atcagcatga
     9181 cgcgcagagc ttttgtctaa aacattattt tttctaaaca ctacttgctg atttttatgc
     9241 acaataaagg taagatgatt gctctggtga aatatcacta aataagaatg tcacggatgg
     9301 aatttataca gtgttaaaag caatgcgttt ctttgtctgc cggccatcag taatatcctc
     9361 tgtaccggct cctcgttgcc aaagtgaagg ttagattaaa cgaatcaaaa aatatccgaa
     9421 ctgtacaatt tttatatcaa ac
//
LOCUS       DAJVSD010000177         9434 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.177, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000177 DAJVSD010000000
VERSION     DAJVSD010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9434
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.177"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(95..591)
                     /gene="sefA"
                     /locus_tag="OQP62_003286"
                     /pseudo
     CDS             complement(95..591)
                     /gene="sefA"
                     /locus_tag="OQP62_003286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001674837.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SEF14 fimbria major subunit SefA"
     gene            945..2094
                     /locus_tag="OQP62_003287"
                     /pseudo
     CDS             945..2094
                     /locus_tag="OQP62_003287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(2126..2266)
                     /locus_tag="OQP62_003288"
                     /pseudo
     CDS             complement(2126..2266)
                     /locus_tag="OQP62_003288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008322911.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
     gene            complement(3003..5335)
                     /locus_tag="OQP62_003289"
                     /pseudo
     CDS             complement(3003..5335)
                     /locus_tag="OQP62_003289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224853.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
     gene            complement(5350..5670)
                     /locus_tag="OQP62_003290"
     CDS             complement(5350..5670)
                     /locus_tag="OQP62_003290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5375 domain-containing protein"
                     /protein_id="HCS1722750.1"
                     /translation="MKNPLPPVLRAALYRRAVACAWLTLCERQHRYPHLTLDALESAI
                     AAELEGFYLRQHGEEKGRQIACALLEDLIEAGPLKAAPSLSFLGLTVMDELCARHITA
                     PVLH"
     gene            complement(5667..5894)
                     /locus_tag="OQP62_003291"
     CDS             complement(5667..5894)
                     /locus_tag="OQP62_003291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001216597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722751.1"
                     /translation="MRHTTITARDLECLEHMRNVGQLVNELMQVQDCATVRRDPVQQS
                     QLTSVIYLMTAQLDGVVERCNQRWLTGEGNV"
     gene            complement(5891..6442)
                     /locus_tag="OQP62_003292"
     CDS             complement(5891..6442)
                     /locus_tag="OQP62_003292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004153681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host cell division inhibitor Icd-like protein"
                     /protein_id="HCS1722752.1"
                     /translation="MMMTIQQTAPFSGLLLFIVSRYSFPAVAKSAAGRGNPSNLTATP
                     DAPCVFFCVYALVHLLLAQWFHDLCSYRVMVAQAGPTSVGPVSVRAGISTPVWATTTE
                     RGNSGGSITCYLTEVALMATILTPSYPQFVFVFAAVRRADRKPRICMLRTVAGDEQAA
                     RLSLVRDYVLSFAGRLPVAEVRA"
     gene            complement(6375..6698)
                     /locus_tag="OQP62_003293"
     CDS             complement(6375..6698)
                     /locus_tag="OQP62_003293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001567417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HCS1722753.1"
                     /translation="MHTAFSSPSSAPAAPLMPVSDTVHERFIRLPEVMHLCGLSRSTI
                     YDLISREAFPKQISLGGKNVAWAQSEITAWMTDRIATGVMTHDDDHSANSPFFWLASF
                     YRFQV"
     gene            7238..7981
                     /locus_tag="OQP62_003294"
     CDS             7238..7981
                     /locus_tag="OQP62_003294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001472073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsid protein"
                     /protein_id="HCS1722754.1"
                     /translation="MKPELIIKSMQTVISKQDEGAEQRIAGALVALNEAKDAHTASMG
                     KLSDIEASIQRCEQERQTALSESAQAEQDWRSRFRTLRGNLTPELKAEHSKRIASREL
                     ADEFTGLITELEKDKSLAMLGACSSGTAYISAHEKAFTTYANSEWKKALAGISPALLR
                     AFLLRIRSLEMSGETSLRATVTRELGDALNMQSALYHFDMEQEPVLSVTGMNRPVITG
                     VDMALLRSPARRMKLAAELAAKDHEQAEG"
     gene            7985..8224
                     /locus_tag="OQP62_003295"
     CDS             7985..8224
                     /locus_tag="OQP62_003295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005225309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ogr/Delta-like zinc finger family protein"
                     /protein_id="HCS1722755.1"
                     /translation="MFHCPFCKKTAHVRTSRYLSENVKQRYHQCTNIECSATFRTIES
                     VDGVIRAAPEKPDPAPVTPPPPRKVQGCYSSPFRH"
     gene            8240..8806
                     /locus_tag="OQP62_003296"
     CDS             8240..8806
                     /locus_tag="OQP62_003296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Polarity suppression protein"
                     /protein_id="HCS1722756.1"
                     /translation="MTTVTIQQAFEACQTNKNTWLKRKAELADLEREYREQLLAGDEQ
                     IPRRMQDLRDNIDVKKWEINQAAGRYIRSHEEVQHISIRNRLHDFMQQHGAELAATLA
                     PELMGYHEQIPAVKQSAMQHSVDYLREALSVWLAAGEKINYSVQDNDMLTTIGFRPDA
                     ASRDDNREKFTPAQNLIYTRRRAELATR"
     gene            9082..>9434
                     /locus_tag="OQP62_003297"
     CDS             9082..>9434
                     /locus_tag="OQP62_003297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000493739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722757.1"
                     /translation="MFTERLARWLARSSAKSGINRPEDLNAVLSTDIGLVRAENQDLI
                     AAIRVNTPSNVGNPFFAMALLDGMGGMQDGKQCATIALSTLFYSLIKFRSDPPESRLL
                     KATLEANSVVYDYAKG"
BASE COUNT         2337 a         2416 c         2487 g         2194 t
ORIGIN      
        1 gcataaaacc tatctattca aaatagatat ttttaaaata ataaaattat ccaaatgccc
       61 tcatattgag ggcatttata aagtttaaat taaattagtt ttgatactgc tgaacgtaga
      121 aggtcgcagt gaaagtacct gctggcaggg tcgatttacc aaaggttgtg acagggacat
      181 ttagcgtttc ttgagagctg gcaactcgcc aacctgcaag cccgtcaatt ccagtatttg
      241 cttggtcatt aatattggct ccctgaatat acccacggaa aacaggctgt ccttgtccat
      301 caacgaacgg gacagtggct acaccaccag ataccgaagc cccttacctg caatagatac
      361 tgagttatgt ggaccagtag cagtaatgct gagagtacca actttctgac cagcagcaac
      421 atcaggccct gtaaagccag gatcctgact ccagttggct gatgttgtat tctgagctgc
      481 aatagtaacc gctgcctgaa cctctgcttt gttaccaaca aagccagctg cgtgggcact
      541 gccacatgca attaaagcaa gaactgctac tgcagatgct gatttacgca tattacaaaa
      601 tctccaaaaa tcaactatta gcattcgcac aatttatctg tgcggatgct aatatactca
      661 cgccatttta aaaatttaag caaaaaacaa ggatcactat tttttatctt tacacgcccc
      721 ccccattaat aagcgaatga tccattaata ctttttgtgg aatatctaat atccacatgt
      781 ttaaaaaatt tcatatcaac cctttattta aaaagcataa acaaaaaaat acatccaaat
      841 aaaaatgttt atgttattta ttgagagaat gggttgtctg atcttaccca gcaagagtgg
      901 acatgcgact aagtgagtaa actctcaaga aagaggtgtc tcacatgaca aaagcagcat
      961 caaccaccaa aaagccatgc aagcaacata cgcctgaatt tcgcgacgaa gccttgaaac
     1021 tggctaacgc attgggatgg ctgcggctac cagcgagctt aacctgtatg aatcgcagct
     1081 ctacaactgg cgaagaaaac agcaaaatca gctctcttct tctgaacgcg aataggagat
     1141 gtccgcagag atcgtccgtc tgaagcatca actggcagaa cgggatgagg aactgactat
     1201 tctccagaag gtcgcgacat acttcgcgaa acgcctgaaa tgaagtatgt cttcatcgaa
     1261 aaacatcagg ctgagttcag tatcaaagcc atgtgccgtg tacttcaggt tgcccgtagt
     1321 ggctggtacg tctggcatca gcgtcgtcat cagataaacc agcgtcagca gttccgcctt
     1381 gtctgtgata acgtcgcccg ggaggcattc agtgacgcaa acagcgctat ggtgcgccac
     1441 gcctgacgga tgagcttcgt gctcagggac gggtgtatac cgtagcggcc agcctgcgcc
     1501 ggcaggcgct gcgggcgaaa gcttcacgga agatcagtcc agtcagttac cgcgaacatg
     1561 gtctgccagt ccagagaatc tgctgaagca ggacttttac gtcagtggcc cgaatcagaa
     1621 atgggtgggt gacatcatgt atcttcgcac cggtgaaggc tggctttatc tggccgtggt
     1681 tattgacctg tggccgcagt cagccactgg ctggtctatg tcctcgcgga tgacggcaca
     1741 gtttgcctgc gatgcattac acatagcgct gtggcggcgt aaacgaccgg aaaagtcacc
     1801 atatatacag acagaggcag taagtactgt tcagcggatt accagagctt actgaaacgg
     1861 cataatctgc ggggcaggat gagcgccaga ggctgttgtt acgataatgc ctgtgcggaa
     1921 agcttcttcc acacgctgaa ggtggaatgt atgcatggag aggactttgc cagccgggaa
     1981 ataatgcggg cagcagtgtt taattatatt gagtgcgatt acaatcgctg gcgtcgccac
     2041 agtgcctgtg gcggtctcag tccggaacaa tttgaaaacc agaaccgcgc ttaaggttgt
     2101 atccctatta cgcgggtagg atcagtttac ccccgaaacg gtattggagt tgccagtatt
     2161 ttgaaccatt ggggttgatc agcaggtgca taccctgccc atctgtgagt ttgaagggtt
     2221 tgtcggaggg cttggtagtc ctaactttga tatcggtgag agccatcagt tgatacctcc
     2281 agtgttggta ccaaaatcaa tcgaaccggg aataccatca gttataccat catcggttgg
     2341 tatatgttca aggaattgag tagacgtgaa cagactaagc caagtcagaa attcgcttaa
     2401 cttactgttt ttgtggatta aagtagacgt tagtagactt gaaaaaagct ttgtatggtg
     2461 cgaaggccgg actcaaaaca caacataata aattgaaaat aaaggaaata aagaagaaca
     2521 catgttcatg tgcccccttt tgtgccccca tggcttttta agccccttaa gttcacaact
     2581 gattggtatt aaaaaggaaa ttgttatttt ccccatcggt taggttccga tatacggatc
     2641 ctaaccgggg taatattgaa catcagtaaa attctttttt tccatataac tgttcacact
     2701 gttcacctct tcacttttct ttttaatatc atggtgataa gtggtgatga gttggtgaag
     2761 agtgaacaat cgactcttca catttgtgat ttttgctcgt cctggatgcg cctggtcagg
     2821 cgatgcgcag ggtgataaaa agttttttca ggttttattg ttcacactgt tcacctctgg
     2881 ttttttatca ataatttcat ggtgatacag ggtgaatata cggtgaaggg tgaacagtgg
     2941 agtgttcacc ctgtggcaat gtccagaaag aaaaagaccg gctgttgccg gtctggagtt
     3001 ggttatgttg ctgcgggttc ctcgcatttc ggcagccagt cgccgtagct ttcctctttc
     3061 agcgacagat tggtttgtat cccctgcttt gtgtgccgct tctcataatt caggccgtat
     3121 tctttcagca tcatgggcag ccccagcccg aacattttca ggctgagcac gttcctgtac
     3181 ccgttagcct ccatataggc cagatacgcg tgataaagat atttacggta attacgcggg
     3241 ataatactgg cattacccat aaacatcccg ttggtctgcg ggagcatttc cagatagccg
     3301 caaaaatcaa acgtcgggtc agcatcgcgc ttgatactga gtgcctcgtc ggagttctgc
     3361 tgtgactgga gcagtgtgcg cgctgtcatc gggtcgctga acttctgcat aagctgacgc
     3421 acaatgatgg ccagctcgcg cgcaatttta tccctgagct gcgggtcgcg ttcctccggg
     3481 gcaatctgct ccgggaagtg aataatcacc cggcggcgcg atacaccacc gctgcggtcg
     3541 gtaaagcgca tcgggttatt gttcacggcc agaatcaccg ctggaatatg ggtggagtac
     3601 gcatccttgt atttcgggtc aacggagacc gcatccccgc cggtgatggc cttgagtcct
     3661 gccccgtcac cgctccattt ttcctggtca ggcagtcgta tcagagagaa gccaatcagc
     3721 gcagcgcgtt cgcggggtga ttccagcgtt tcgatggtgg ccgacgtggc gttatcttcc
     3781 ccggcaagca tggtcgcaat ttcggccaga atactttttc cgctcccgcc ggggccggtg
     3841 acttcgagaa agagctgcca gtcgtaacgg ttcgccagaa ccataaacag cgcggccaga
     3901 atcacatcgc gtttttccgg tttgccaccg gcagcgcggt caagccagcg ccagaaatga
     3961 ggggcgtggg tttccagcgt ttcgccctcc accggtgagg tgaaatcaac atcacatagc
     4021 gtgcgcagcc agtgcgattt gtggtgcggg ctgaaagtgc cggtggcggt atcgagtacc
     4081 ccgttacgaa aaccaatcag acggcgcgcc ggtgcgtcct gctgcggaat aatcagtttc
     4141 agggtctcca ccactgaggc aattttcccc gacgagaacg gggcgcgcag acgctgaaac
     4201 aacccggcca cgtcgcgggc aaaatccgac gggggaatga ttttccatat tcctgcctca
     4261 tatcgggaca ggagctggcc gttcgcatcc acggccagcg cttcgccgta atgttcatgc
     4321 acccgcattg ccttttcact ggtgctcatg gcggtaaatt ccgcttcgct catggtagtg
     4381 aaagggctgt cagccggagg ccggatggcg tcataaatgg ctttccgcgt ggcctcttca
     4441 cctttctgca taaacgcatc attccagtca ccgaacaccg gcggcagggc gacaatgccc
     4501 tcgcaggcgt ctgcggccgc agcggcttta ctctggccgt tgccgttaag gtcacggtcg
     4561 gcggcgagga caatctgaca ggccgggtgt ttctgacggg caaggctcgc cagagaaagt
     4621 aggttcacgg aggacagcgc caccatgacg gtttccccgg tcaggtgatg tacggtgagc
     4681 gcggtcgcat agccctccgc aacccacagg cgttttcccg cctgtttttc ccttcgatgg
     4741 tgtgacacgc tccttttacc gccccgcctt tcagggtgcg tttgagaccg tcagaattaa
     4801 taagctgaac gttaaccagc gccccggcat tgtcatacag cgggacaacc atatcaccgg
     4861 cgcggaacgt cacgccgccg gttttgtgtg tggccgtcag catgacacac tcatgaccgg
     4921 ggaatccctt gcgggtgagg taggcgttgc cgctggccgg tcgggttttc tccatgagct
     4981 ttacggccag cgcggccgcc gctttgcggt cagcctccgt ttctgcttct gcggccgcaa
     5041 tcacttccag ggcaaccggc ggcaggttgc cggtcacggc atccaccttt ccggcggcct
     5101 cggaggccga cacgccaaat accttctcaa ccagcttaag cccgtcaccc gcgccgcact
     5161 ggttgcagaa ccacgtcccg cgtccctctt tatcgtcaaa gcggaaacgg tcagagccgc
     5221 cgcacaccgg acaggcctga tggcggtttt taatcacctt cacacccagc gccgggagaa
     5281 tacgcgacca gtggccgcag gcttgtttta ccgtttccgt tacgttcatt ttcatgttta
     5341 ttttctccct cagtgcagta ccggtgcggt gatatgacgg gcgcaaagct catccatcac
     5401 ggtcagcccg agaaaggaca gcgacggtgc ggccttaagt ggcccggctt ctattaaatc
     5461 ttccagcagt gcacaggcaa tctggcggcc tttttcctct ccgtgctggc gcaggtagaa
     5521 gccctccagc tcggcggcaa tggcgctttc cagcgcgtcg agggtgaggt gcggatagcg
     5581 gtgctggcgt tcgcacaggg tcagccaggc acaggccacg gcgcgacgat acagcgcggc
     5641 gcgtaatacg ggcggtaatg gatttttcat acgttgccct ccccggtcag ccagcgctga
     5701 ttgcagcgct ctaccacgcc gtcaagctgg gcggtcatga ggtaaatcac cgaggtgagc
     5761 tgtgactgct gcaccgggtc gcgacgaacg gtggcgcagt cctgcacctg catcagctca
     5821 ttgacgagct ggccgacgtt gcgcatatgc tccagacatt cgaggtcacg ggcggtaatg
     5881 gtggtgtgtc tcatgcgcgc acctccgcaa ccggcagacg accagcgaac gagaggacgt
     5941 aatcgcgaac gagggaaaga cgtgcggcct gttcatcacc ggcaacggtg cgaagcatac
     6001 agatacgggg tttacggtct gcgcgacgaa cagcggcaaa cacaaagaca aactgcgggt
     6061 atgacggggt gaggatcgta gccataaggg caacctccgt tagatagcag gttatgctac
     6121 caccggagtt tccacgctca gtggtggtag cccagacggg ggtggaaata ccggctctaa
     6181 cggataccgg cccgaccgaa gtcggccccg cctgagccac cattactcga tagctgcaaa
     6241 ggtcatgaaa ccattgcgca agtaacaggt gcacgagggc atagacacaa aaaaagacgc
     6301 atggcgcgtc aggtgtcgcc gttagattac tcgggtttcc acgcccggct gccgattttg
     6361 cgacagcggg aaaactatac ctggaaacga taaaaagaag caagccagaa aaaggggctg
     6421 tttgctgaat ggtcatcatc atgcgtcata accccggttg cgatgcggtc agtcatccat
     6481 gccgtgattt cagactgcgc ccacgccacg ttttttccgc cgagggagat ttgtttcggg
     6541 aaggcttccc ggctgatgag gtcgtaaatg gtcgagcggg acagaccgca cagatgcatc
     6601 acttcgggca gacgaataaa acgctcatga acggtatcag aaaccggcat cagcggcgcg
     6661 gcaggggcag aagacgggga agaaaaagcg gtgtgcatcg ggctacctca caaagtccat
     6721 acagtgccgg tcgtgtccgt ccggcttcgg gtagctctct attttgtgaa tatttttacg
     6781 cagggcaaca agtcattttg tagtactcca ccacacaaca gagcgatttt tatacagtgg
     6841 caaacgttgg ccgttttttg gcaaacgttg gcaaaccggt ggcccattgc tgattacttt
     6901 tgtttatata tttctttttt taatcgctaa aaaatctaag aagctggctg gctgaacaaa
     6961 gtgaagggtg aacagtggtg aacagacggt gaacactcag accttcaact attcaccctt
     7021 taactcactg tattacttat ctttttattt aaggtgaaca gtggtgaata gttattagta
     7081 aaaaaacaaa cggtgagtca ggttttcctg agacctttct gtggccagcc ggtttttaag
     7141 gtctgtttgt gccagcactc tgacaacggc aatgaatcgt gttgttgtgc aggaggcgtc
     7201 agaatcattt caggttgaac acacggagag cctgaacatg aaacccgaac tcattatcaa
     7261 atccatgcag accgttatca gtaaacagga tgaaggcgcg gaacaacgca ttgccggtgc
     7321 gctggtcgca cttaacgaag caaaagacgc acacacggcc agcatgggta aactcagcga
     7381 cattgaggct tccattcagc gttgtgagca ggaacgacag accgccctca gtgaaagtgc
     7441 acaggccgaa caggactggc gcagccgctt tcgaactctg cgcggcaacc tcactcctga
     7501 actgaaagct gaacacagta aacgtatcgc cagccgcgaa ctggctgatg agttcaccgg
     7561 tctgattacc gagctggaga aagacaaaag cctcgccatg cttggtgcat gctcctccgg
     7621 tacggcttat atcagcgccc atgaaaaagc gttcactacc tacgccaaca gcgagtggaa
     7681 gaaggcgtta gccggtatca gccccgcact gttacgtgcc tttctgttgc gtattcggtc
     7741 gctggaaatg agcggagaaa cctcgctgcg tgcgaccgtg acccgtgagc tgggtgatgc
     7801 cctgaatatg cagtcagccc tgtatcattt tgatatggag caggagccgg ttctgtccgt
     7861 aacgggcatg aatcgcccgg tcataaccgg ggttgatatg gcgctgttaa gaagcccggc
     7921 cagacggatg aagcttgccg ctgaactggc cgcaaaagac cacgaacagg cagagggctg
     7981 aattatgttt cactgtccgt tctgcaaaaa gaccgcgcac gtccgtacca gccggtatct
     8041 gtcggaaaac gtcaaacagc gttatcacca gtgtaccaat atcgaatgtt cggccacttt
     8101 ccgcaccatt gagtcggttg acggtgtgat acgtgctgca ccggagaaac ccgaccccgc
     8161 gccggtgacg ccaccgccgc cgcgtaaagt acagggctgc tacagctcgc cgtttcggca
     8221 ttaatcagga gagagactcg tgaccactgt gaccatacag caggcctttg aggcctgtca
     8281 gacgaacaaa aatacctggc tgaaacgtaa agccgaactg gcagaccttg aacgggaata
     8341 ccgtgaacag ctccttgccg gtgacgaaca aatcccgcgc agaatgcagg atttgcgcga
     8401 caatatcgac gtgaaaaagt gggagattaa tcaggccgcc ggtcgctata tccgctcaca
     8461 tgaggaggta cagcacatca gcatccgcaa ccggctccat gactttatgc agcagcacgg
     8521 cgcggagctg gccgccacgc tggcgcctga gctgatggga tatcacgaac aaattcccgc
     8581 agtaaaacag agcgccatgc agcactcggt tgattatctg cgtgaagccc tgtcggtgtg
     8641 gctggccgca ggtgaaaaaa ttaattattc cgtgcaggac aacgatatgt taacgaccat
     8701 cggattcagg cctgatgcgg cttcgcggga tgataatcgc gagaaattca ctccggcaca
     8761 gaacctgatt tacacccgcc gacgtgcaga actggccaca cggtagtacg cgaaaaaatc
     8821 ccccgaaaat tccgctattt ttcctgaaaa aagccatgca tccataaggt gcatggtttt
     8881 gcatgcaaat ccccgtattt tttatcccac gcaacaccag tgctggtgcg gcctgaggac
     8941 gttcatgcac ctgcattaaa agcgacctct taagcgggca ggcgtggcgg ggagagcatt
     9001 gcgcgcgagc tctttcgtat taattgacaa ttggttagct cattgcgaaa gtaaactccc
     9061 ccacaataaa acggaattac tatgtttaca gaacgacttg ctcgctggtt agctcgttct
     9121 tcggccaaaa gcggcattaa ccggccagaa gacctcaacg ctgtccttag cacggatata
     9181 ggactggtta gagctgagaa tcaggatcta atagccgcga ttagagttaa cactccgtca
     9241 aacgttggca atcctttttt tgcaatggcg ttattagatg gcatgggtgg aatgcaagat
     9301 ggaaagcaat gcgcaacaat tgctttatca actttattct attctttgat taagtttaga
     9361 agtgatcctc ccgagtctcg gttattaaaa gcgactttag aagcaaactc cgttgtatat
     9421 gactatgcaa aagg
//
LOCUS       DAJVSD010000178         9424 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.178, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000178 DAJVSD010000000
VERSION     DAJVSD010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9424
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.178"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(51..2213)
                     /gene="uvrD"
                     /locus_tag="OQP62_003298"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
     CDS             complement(51..2213)
                     /gene="uvrD"
                     /locus_tag="OQP62_003298"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HCS1722758.1"
                     /translation="MDVSYLLDSLNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIA
                     WLLSVENNSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHH
                     MDANLPQDFQILDSEDQMRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ
                     SYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNIL
                     VDEFQDTNNIQYAWVRLLAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAQT
                     IRLEQNYRSTSNILSVANALIENNNGRLGKKLWTDGVDGEPISLYCAFNELDEARFVV
                     NRIKTWQDNGGALAQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDAL
                     SYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKAL
                     AGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIEN
                     LEELVTATRQFSYNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLE
                     FPQVFIVGMEEGMFPSQMSLDEGWRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKE
                     VYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMGTPLAENDTGYKLGQRVRHAKFG
                     EGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYAKLETV"
     gene            complement(2349..3065)
                     /gene="yigB"
                     /locus_tag="OQP62_003299"
     CDS             complement(2349..3065)
                     /gene="yigB"
                     /locus_tag="OQP62_003299"
                     /EC_number="3.1.3.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(5-phospho-D-ribitylamino)uracil
                     phosphatase YigB"
                     /protein_id="HCS1722759.1"
                     /translation="MRFYRPLGRIAALTFDLDDTLYDNRPVILRTEQEALAFMQNYHP
                     SLRSFQNVDLQRIRQAVREAEPEIYHDVTRWRHRAIEQAMRDAGLSAQESIAGANAAM
                     MHFAKWRSQIEVPQATHETLQQLAKKWPLVAITNGNAQPELFGLGDYFKFVLRAGPDG
                     RSKPFSDMYFLAAEKLHVPIGEILHVGDDLTTDVAGAIRCGMQACWIKPENADLMRTQ
                     DSRLLPHIEISRLASLTSLI"
     gene            complement(3065..3967)
                     /gene="xerC"
                     /locus_tag="OQP62_003300"
     CDS             complement(3065..3967)
                     /gene="xerC"
                     /locus_tag="OQP62_003300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HCS1722760.1"
                     /translation="MTEVALSLDVSRFLRYLGVERQLSPITLQNYQRQLDAIIALAGE
                     TGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKG
                     VSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIK
                     HLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGLFASDEEALFLSKLGKRIS
                     ARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQI
                     YTHLDFQHLASVYDAAHPRAKRGK"
     gene            complement(3964..4671)
                     /locus_tag="OQP62_003301"
     CDS             complement(3964..4671)
                     /locus_tag="OQP62_003301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF484 domain-containing protein"
                     /protein_id="HCS1722761.1"
                     /translation="MKQPEEELQETLTELDDRAVVDYLRHHPEFFIRNAHAVEAMRVP
                     HPVRGTVSLVEWHMARARNHINVLEENMTLLMEQAHANESLFYRLLHLQSRLVAADSL
                     DEMLMRFHRWARDLGLAGATLRLFPDRWRLGAPSRYTHLALNRQAFEPLRIQRLGQSQ
                     HYLGPLNGPELLVVLPEAKAVGSVAMSMMGSDGDLGVILFSSRDPHHYQPGQGTQLLQ
                     EIALMLPELLERWIKRV"
     gene            complement(4668..5492)
                     /gene="dapF"
                     /locus_tag="OQP62_003302"
     CDS             complement(4668..5492)
                     /gene="dapF"
                     /locus_tag="OQP62_003302"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HCS1722762.1"
                     /translation="MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQ
                     LLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANG
                     RMVLSVTEDELVRVNMGEPNFEPAQVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHC
                     VIQVDNVDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACG
                     SGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL"
     gene            complement(5529..5732)
                     /locus_tag="OQP62_003303"
     CDS             complement(5529..5732)
                     /locus_tag="OQP62_003303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1722763.1"
                     /translation="MKNVFKTLAVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKKVDS
                     QTQSTMPDKNDRATGDGPSQVNY"
     gene            5918..7927
                     /locus_tag="OQP62_003304"
     CDS             5918..7927
                     /locus_tag="OQP62_003304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001200019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722764.1"
                     /translation="MQYRNLFCLFSLSLLLPPAWGCRLSEPPHNVYQRQGSGVVYLQP
                     EEENNLSLPEVNFKRLRRLPNSLINPATQDEWDREPPLTDLTTDYVHTSAQAIFPRFS
                     YYSDGRVILYGGKIMRNPPGTPSVDVASFRAFGKVGVDKNSLYDEGKRTDDNGGENRV
                     NLQSLRKVEFSSQWKPDLLGLTLRDDRFLYVDGHRLSDPDSFTVLAQKSWDQRGKFSA
                     TFNPCIAVPFGPWDTLARTRTKIIINGDQLDADPDTFSVVRWMPGSLLTWRDKNGLHR
                     HVLNQNNLNWDMQIEKHCDAFNLQEKRVLWRKGPGCKFAEIPGLDPEQFHPLSNAVAQ
                     SQDRLYAIRKTEFGENQLDVVTLDNPNLVIDKRFNAGRYHGYLLTKTRSDFKEEDGLQ
                     VFESAGPLILMDYHVPDETEAHLGDSPHYKKWYARDDRYVYAFDGAQLWRYPTPNPKA
                     LRMKWQTTHSGYGYWVDYRIAQLDGALMEDGSFIATGIPRDPSVKTAYVKTDGTFDIG
                     KTAVRWRKVLSPDGEWGRWQTIPNVDPSQFHLVNDRIAQYKDRLYIARLSPFGEDQLE
                     TLELDSTAPFLNQKINAGKEHGYFMHNSQQAQDIQVFSINGPLKVTERFAYDNRYVYT
                     WIGSQIYRTASLCPDKTLNLNQNMYSDNKDIIIITQAQECQKSRR"
     gene            7906..8295
                     /locus_tag="OQP62_003305"
     CDS             7906..8295
                     /locus_tag="OQP62_003305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3021 family protein"
                     /protein_id="HCS1722765.1"
                     /translation="MPKITSLSRFARLIKHLKNALRGVGIGSCIYVIVESVMHGTING
                     VEAAGVLTISAVLGLLSALLDIKAKPRAPLILLHFLLCGGCVALMVAMLSVLNHFPVN
                     ASVILITSALFIVIYLPLGFILYRSQR"
     gene            8365..8685
                     /gene="cyaY"
                     /locus_tag="OQP62_003306"
     CDS             8365..8685
                     /gene="cyaY"
                     /locus_tag="OQP62_003306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000999950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HCS1722766.1"
                     /translation="MNDSEFHRLADALWLTIEERLDNWDGDSDIDCEINGGVLTLSFE
                     NGSKIIINRQEPLHQVWLATKQGGYHFDLKGDEWVCDRSGETFWDLLEQAATQQAGEK
                     VSFR"
     gene            complement(8757..9119)
                     /locus_tag="OQP62_003307"
     CDS             complement(8757..9119)
                     /locus_tag="OQP62_003307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722767.1"
                     /translation="MFFVITHHIDVLPLATLPTHETCPYCNNQDVWLIIRQKRTRTCG
                     LSQARKRDKFGLAICNHCSNEIKEKRWSPALRQLFTEQKSLFNLTFWQRYGFWVGWLS
                     VWPALFLATWLYFTFRGW"
     gene            complement(9131..>9424)
                     /locus_tag="OQP62_003308"
     CDS             complement(9131..>9424)
                     /locus_tag="OQP62_003308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722768.1"
                     /translation="QEGVTLHTTRLPIVYWHEIDYVGERVSDNTPVLAIFVKDIELYC
                     QRITNEKMRNNFLSLLNKHGSNRVMNISLNDLDYDSDELQDIFKMAVARNLEQ"
BASE COUNT         2183 a         2667 c         2406 g         2168 t
ORIGIN      
        1 gccagcgcgt aggccggata agaggtgcca tccggcaata tgagagccgg tcaaaccgtt
       61 tccagcttcg catacgcggc aaccagccat ttgatccctt gcccctgaaa agccacctgc
      121 aaccggctat gttcgccgct gccctccagg ttgacaatag ttccctcgcc gaacttcgca
      181 tggcgcacgc gttggccgag tttgtagcct gtgtcgtttt ccgccagcgg cgttcccatt
      241 cgttgatggc tcaccggacg actgacggtg gcgcgcagac ggacctcttc cacgcactcc
      301 tccggcaact cgccgatgaa acgcgacggg cgatgataaa cctctttacc atacagacgg
      361 cgagtttcgg cataggttag cgtcagtttc tgcatggcac gggtaacgcc gacgtaggcc
      421 agacgacgct cctcttccaa acgccagccc tcatccagcg acatctggct ggggaacatc
      481 ccctcttcca tcccgacgat aaacacctgc gggaactcca gccctttggc cgagtgcagc
      541 gtcatcagct gtaccgcatc ctgccaggta tccgcctgcc cctcgcccgc ttccagcgcc
      601 gcgtgagaga ggaaggcctg caatggcatt aaatcttcat cttcgtcgtt gtagctgaac
      661 tgccgcgttg ccgtcaccag ttcctctaag ttttcgatgc gcgtctggcc tttctcgcct
      721 ttttcttgct catacatggt gcgcaggccg gaatctttga tcacccggtc agtctgcaca
      781 tgcagcggca tgtcggcggt ttcctgcgcc agggcgtcga tcagttccat aaagcgttgc
      841 agcgcgctgg ccgcacgccc ggccagggct ttttcctgta acaattcacg gcacgcctgc
      901 cacaatgtta gctggcgatc gcgcgaggtc tggcgcacca cgtccagcgt gcggtcgccg
      961 ataccgcgcg ttggggtatt caccacgcgt tcaaaggcgg catcatcgtt gcgattggca
     1021 atcaaacgca gataagagag cgcatctttg atctcctggc gttcgaagaa gcgcataccg
     1081 ccgtaaatgc ggtacggcat actggcctgt aataacgctt cttccagcac gcgcgactgg
     1141 gcgttgctgc gataaaggat ggcgcattgc gcaagcgcgc cgccgttgtc ctgccaggtt
     1201 ttgatacgat taaccacaaa gcgagcttca tccagttcgt tgaaagcgca gtacagcgat
     1261 atcggttcgc cgtcaacgcc gtcagtccac agctttttgc ccagacgccc gttgttgttt
     1321 tcaatcaggg cgttcgccac gctaagaatg ttgctggtcg agcggtaatt ctgctccaga
     1381 cgaatggtct gcgcgccggg gaaatcattg aggaagcgct ggatgttctc tacctgggcc
     1441 ccgcgccagc cgtagatcga ctggtcatcg tcgccgacaa tcatcacttt accggtatcg
     1501 cccgccagca gacgaaccca ggcgtactga atgttgttgg tatcctggaa ttcgtccacc
     1561 agaatgttag taaaccgctc gcgatagtgt tgcaggatgt gcggcttgtt cagccatagt
     1621 tcatgagcgc gcagcagtag ctcggcgaaa tccaccagac cagcgcgatc gcacgcttcc
     1681 tgataggcct gatacacctt ctgccaggtc tgttccaccg gattgccata gctttggata
     1741 tggtgcgggc gtagcccttc gtctttctgg ctattgatgt accacatcgc ctgacgcggc
     1801 ggccactgct tctcatcaag attcatcgcc ttaatcaggc gtttaagcaa acgcatctga
     1861 tcttcgctgt cgagaatctg gaaatcctgc ggcaaattag cgtccatatg atgcgcgcgc
     1921 agcaggcggt gcgccagacc gtggaacgtc cctacccaca ttccgccctg gctggtcccc
     1981 atcaactggc caatacgatg gcgcatttcc gccgccgctt tgttggtaaa ggtcaccgcc
     2041 atgatggagt atggcgagtt gttttctacg ctcagtaacc aggcgatacg gtgcaccagc
     2101 acgcgggttt tcccgcttcc cgcgcccgcc agcaccagca tgttgctacg tggcgcggcc
     2161 accgcttcgc gctgtttatc attaaggctg tcgagcaggt aagaaacgtc cattggcacc
     2221 gccgcgtaaa aacatgaaaa ctaaaaacgc ccggtggcgc ttcgcttacc ggggctactt
     2281 atcgtagggc ggataagcat agcgccatcc gccagaataa ctgggaattt atacagaact
     2341 actggtgatt atatcagcga ggtgagagat gccaaccgcg aaatttcgat atgcggcagt
     2401 aaacggctgt cctgcgtccg catcaggtcg gcattttcag gtttaatcca gcaggcctgc
     2461 atcccacagc gaatagcgcc agccacatcg gtagtcagat cgtcgccgac atgcaggatc
     2521 tcgccgatcg gcacatgcag tttttccgcc gccaggaaat acatgtcgct aaacggtttg
     2581 gaacgtccat ccgggccggc gcgcagtaca aacttaaagt aatcgccgag gccaaacagt
     2641 tccggctggg cattgccgtt agtgatcgcc accagcggcc attttttcgc aagctgctgt
     2701 aacgtctcat gggtagcctg cggaacctca atctggctgc gccatttggc aaaatgcatc
     2761 atcgccgcat tcgcaccggc aatggactcc tgcgccgata atcccgcatc ccgcatggcc
     2821 tgctctatcg cgcgatggcg ccagcgggta acgtcatgat agatttccgg ctccgcttca
     2881 cgcaccgcct gccgtatccg ctgtaaatcg acgttttgaa acgaacgtag cgacgggtga
     2941 taattttgca taaaagcgag cgcttcctgc tcagtacgca aaatcaccgg acggttatca
     3001 taaagggtat catccaggtc aaaggtgagc gcggcaatac gccccaaagg ccggtaaaaa
     3061 cgcattattt cccccgttta gcgcgcggat gcgccgcgtc gtacactgaa gcaagatgtt
     3121 gaaaatcaag atgagtataa atttgggtgg tggaaaggtt ggcatgaccc agcagctctt
     3181 gcacgccgcg cagatcgccg ctcgattcca gcatatgggt cgcgaacgaa tggcgcagct
     3241 tatgtggatg cacgtggctg tttagcccct gctttatgcc ccattcggcg aaccgttttt
     3301 ggacattgcg cgcggagata cgcttgccga gcttcgacag gaataacgcc tcttcatcgc
     3361 tggcgaacag gccgcgcaga tccagccagt gctcaatcca cgtcaccgcg ttacggccaa
     3421 tcggcaggcg tcgctctttg ctgcctttac ccattaccca cacttctccg gtatcgagat
     3481 cgaggtgctt tatatccagg ccaaccagtt cggataaacg cagccccgcg ccgtacatga
     3541 cctccagcat cgcccggtca cgtacggcga gcggatcgtt aagatcgatg tccagcaggc
     3601 ggttaacgtc gtcgacatca atatttttcg gcagatgacg cggcgctttc ggtgcggaga
     3661 cgcccttcgc cgggttagct ttcaattcgc cctgactgac taaccagtca aaaaagcttc
     3721 gcaatgccga gagacgtagc gccagactgg cagggccaag ccctttacgc cgactgcgca
     3781 ccgcaaaact gcgcacaatc gcagcgtcac attgttgcca gcttttcagc ccggtttctc
     3841 cggctaaagc gataatggca tcaagctgac gctggtagtt ctgcagggta atggggctaa
     3901 gctggcgctc cacgcctaaa tagcgcagga accgcgagac atccagagaa agcgcgacct
     3961 ccgtcatacg cgtttaatcc agcgttccag cagttccggc agcatcagcg cgatctcctg
     4021 taaaagctgc gtcccctgcc ccggctgata gtggtgcggg tcacggctgc tgaagagaat
     4081 caccccgagg tcgccatcgc tgcccatcat cgacatggct accgacccta cagccttcgc
     4141 ctccggcaag accaccagca gttccgggcc gtttagcggg ccaagataat gctgcgactg
     4201 tcccagtcgt tgaatacgca gcggctcgaa ggcctgacgg tttaaagcca gatgcgtata
     4261 gcgcgatggc gcgccaagac gccaccgatc cgggaacaaa cgcagcgtcg cgccggcaag
     4321 ccccaaatcg cgcgcccagc ggtgaaaccg catcagcatc tcatccagac tatccgcggc
     4381 gaccagacgg ctttgcagat gcagcaagcg ataaaacagg ctttcattgg catgagcctg
     4441 ttccatcagc agcgtcatat tttcttcaag cacattgatg tgattacgcg cgcgggccat
     4501 atgccactca acgagcgaaa ccgttccccg cacgggatgt ggaacacgca tcgcttcaac
     4561 ggcgtgggcg ttacggataa aaaactcagg gtggtggcgc aggtaatcga cgaccgctcg
     4621 atcgtccagt tccgtgagcg tttcctgtag ttcttcctct ggttgcttca taaatggata
     4681 aatccgtcgt agatatgtgc cgccggacca gtcatgtata acggatgacc cggacctttc
     4741 caggcgatat ccagccgacc gcccggtaat tccacgcgta cttcttcagc cagcagcccc
     4801 tgctgaatcc ccacggcaac ggcagcgcac gcgccgctgc cgcacgcgcg ggtctcccct
     4861 gcgccgcgtt catagactcg cagccggata tgctcacgtc ttacaacctg cataaaacca
     4921 atgttggcgc gttccggaaa acgctcatgg ctttccagaa ccggccccag tgtttcaacg
     4981 gccgccgtgt cgacgttatc aacctgaatg acacagtgcg gattgcccat tgaaaccacg
     5041 ccgcacagta tggtctgttc cgccgctcgc ataatatacg tcttttccgc tttgttggcg
     5101 cgaaaaggca cctgcgcggg ttcaaagttt ggctccccca tgttcacccg caccagttca
     5161 tcttccgtga cgctcagtac catccggcca ttcgcggtac tgacccgaat atcgcgttta
     5221 ttggttagcc ctttcaggcg aacaaatcgc gcgaaacagc gcgcgccatt gccgcactgc
     5281 gagacttcac tgccgtcggc gttgaagatg cggtaatgaa agtccaactc aggatcatag
     5341 ggcggctcaa ccaccagcag ctgatcgaac cctacgccca agtgtctgtc ggatagccga
     5401 cgaatcagtt ccggcgaaaa aaagacattc tgcgttaccg cgtcgacgac cataaaatcg
     5461 ttgccaaggc catgcatttt agagaattgc atcattcact ccgttcacgc ggggacagaa
     5521 aactatcctc agtaattgac ctgggacggg ccatctcccg ttgcgcgatc gttcttatcg
     5581 ggcatcgtgg actgcgtttg cgaatcgact tttttcgtcg gcggcggcgc atttttatcg
     5641 gctggcggga aataaagcgg ccctttcaaa ccgcagcccg tcaggctgaa cagagtcaga
     5701 agtacagcga gtgtcttaaa cacgtttttc attatggatt gcctgtaagt tcatgctttc
     5761 tattttctat catcgcagga gaaggagtaa aagcaagcgt ttaggggctc tttataaaat
     5821 ctgaaaagcg gcgcgttgcc atgattattg cgcatttaca tcaggaaaca tgctttgctc
     5881 atcactttag gtttacgtac cacgtccgga tgaccttatg caatatcgta atttgttttg
     5941 ccttttttcg ctttcacttc tgctgcctcc cgcttgggga tgccggctga gtgaacctcc
     6001 gcacaatgtt tatcaacggc aaggcagcgg cgtggtttat ctccagccag aagaggagaa
     6061 caatctttcg ttgccggagg tgaatttcaa acgcctgcgt cggttaccca attcattgat
     6121 taacccggca actcaggatg agtgggacag ggaaccgccg ctcaccgacc tgacgaccga
     6181 ttacgttcat accagtgcgc aggctatctt cccgcgcttt tcctactaca gcgacggacg
     6241 cgttattctg tacggtggaa aaatcatgcg taatccgccg gggacgccat cggtagatgt
     6301 cgcctcattt cgcgcctttg gcaaagtcgg cgttgataaa aatagtctct atgacgaagg
     6361 caaacgaacg gatgacaacg gcggcgaaaa ccgcgttaat ttacagtcat tgcgtaaggt
     6421 tgaatttagc agccagtgga aaccagacct gttgggcttg acgctgcgcg acgatcgctt
     6481 tctttatgtc gacgggcatc gcctgagcga cccggacagt ttcaccgttc tggcgcaaaa
     6541 gtcctgggat cagcgcggta aattttccgc cacatttaat ccttgtatcg ccgtcccctt
     6601 tggtccctgg gatacgctgg cccgcacacg caccaaaatc atcatcaacg gcgaccaact
     6661 ggacgccgac ccagacacct tttccgtggt gcgctggatg cccggttctc tattgacctg
     6721 gcgcgataaa aacggcttgc accgtcacgt tctcaaccag aacaatctga attgggacat
     6781 gcaaattgaa aaacactgtg atgcgttcaa cctgcaggaa aaacgcgtgc tgtggcgtaa
     6841 aggaccggga tgcaaatttg ccgaaatccc cggccttgac ccagaacagt ttcatccgct
     6901 cagtaatgcg gtggcgcagt ctcaggatcg gctttatgcc atcaggaaaa cggaattcgg
     6961 cgaaaaccaa ctggatgtcg tcacgctgga taacccaaat ctggtaatag acaagcgttt
     7021 taatgccggg cggtatcacg gttatttact cactaaaacg cgatccgact ttaaggaaga
     7081 agacggattg caggtattcg agtcggctgg cccgcttatt ctgatggact atcacgttcc
     7141 ggacgagaca gaagcgcatc tgggcgacag cccacattac aaaaaatggt acgcacgcga
     7201 cgatcgctat gtttacgcgt ttgatggcgc tcaactgtgg cgctatccca cgcccaatcc
     7261 caaagctcta cgcatgaaat ggcaaacaac acactcagga tacggctatt gggtggatta
     7321 ccgcatagcc cagttagatg gcgctctcat ggaggatggc tcttttatcg ccacgggtat
     7381 cccgcgcgat ccttccgtaa aaacagccta tgttaaaacc gatggcacct ttgacatcgg
     7441 caaaacagcg gttcgctggc gcaaggttct gtcacctgac ggtgagtggg gtcgttggca
     7501 aaccattccc aacgttgacc cgagtcagtt tcatctggtt aacgatcgca tcgcgcaata
     7561 taaggaccgg ctatacattg cgaggctctc accttttggc gaagaccagt tggaaacgct
     7621 ggaactggat agcacagccc ccttcctgaa ccagaaaatt aacgccggaa aagagcacgg
     7681 ctactttatg cataatagcc agcaggctca ggatattcag gtctttagca tcaatgggcc
     7741 gctaaaagtc accgagcgtt ttgcgtatga caaccgctat gtttatacgt ggattggtag
     7801 ccagatttac cgaacagcat ccctctgccc ggataagacg ctcaatttga atcagaatat
     7861 gtactccgac aataaagaca tcatcatcat aacgcaggcg caggaatgcc aaaaatcacg
     7921 tcgctaagcc gttttgcgcg cttgattaaa catttgaaaa acgcccttcg gggcgtgggg
     7981 atcggttcat gcatttacgt cattgttgaa agcgttatgc acggcacgat aaacggtgtt
     8041 gaagctgccg gagtcctgac gataagcgcg gtactcggtc tgcttagcgc tcttttggat
     8101 atcaaagcaa agccgcgcgc ccccttaatc ctgttgcatt ttctcctctg cggcggctgc
     8161 gtcgcactga tggtggcaat gctgtcggtt ctgaaccatt tcccggttaa tgcgtccgtc
     8221 atacttatca ccagtgcgct atttatcgtc atttatctac cgctgggttt tatcctttac
     8281 cgctcacaac ggtaattcgt atcggttcca gaagctgacg cttcccctta tactggcgct
     8341 atcactcaat agcgggataa aacaatgaac gacagtgaat ttcatcgcct ggctgacgcc
     8401 ctgtggctca ccattgaaga acgccttgat aactgggacg gcgacagcga tatcgactgt
     8461 gaaatcaacg gcggcgtgct gaccctcagc tttgagaacg gcagtaagat cattattaac
     8521 cgtcaggagc cgttgcacca ggtgtggctg gcaaccaaac agggcggcta tcatttcgat
     8581 ctgaaaggcg acgagtgggt ttgcgatcgc agcggcgaaa cgttctggga tctgctggag
     8641 caggcggcga cgcagcaggc gggtgaaaag gtgagtttcc gttaagtttt caattccgca
     8701 ggagagccag aagaatagcg ctttcctgcg tatatttaac gagatatgcg gtcgtattac
     8761 caaccccgga atgtgaaata cagccaggtt gccagaaaca acgcgggcca tacactcaac
     8821 caaccaaccc aaaaaccgta gcgttgccaa aaggttaggt taaatagtga cttctgctcg
     8881 gtaaaaagtt gacgtaacgc tggtgaccaa cgtttttcct tgatttcatt gctgcaatga
     8941 ttgcatatcg ctaaaccaaa cttatctctt tttctcgctt gagacagacc acatgtacgg
     9001 gtcctttttt ggcgaataat caaccataca tcctgattat tacaataagg gcatgtttca
     9061 tgtgtgggta gggttgccag aggcagcaca tcaatatggt gagtaataac aaaaaacata
     9121 tatctctacc ctattgttcc aggtttctgg caacagccat tttaaaaata tcctgtaact
     9181 catctgaatc ataatcgaga tcgtttagag agatattcat cacgcgatta cttccatgct
     9241 tattcaataa tgacagaaaa ttattacgca ttttctcatt agtaattcgc tgacaataaa
     9301 gctcaatatc tttgacaaaa atggccagca caggcgtatt atcgctaaca cgctcaccaa
     9361 catagtcgat ttcatgccag taaactattg gtagcctggt tgtgtgtaat gttactccct
     9421 cctg
//
LOCUS       DAJVSD010000179         9340 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.179, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000179 DAJVSD010000000
VERSION     DAJVSD010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9340
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.179"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..947
                     /gene="cysB"
                     /locus_tag="OQP62_003309"
     CDS             <1..947
                     /gene="cysB"
                     /locus_tag="OQP62_003309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012017585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CysB"
                     /protein_id="HCS1722769.1"
                     /translation="EVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGK
                     HLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPGVI
                     KGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVMLPCYHWNRSI
                     VVTPDHPLAATSSITIEALAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDAD
                     VIKTYVRLGLGVGVIASMAVDPLTDPDLVRIDAHDIFSHSTTKIGFRRSTFLRSYMYD
                     FIQRFAPHLTRDVVDTAVALRSNEEIEAMFQDIKLPEK"
     gene            1207..1368
                     /locus_tag="OQP62_003310"
     CDS             1207..1368
                     /locus_tag="OQP62_003310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001308615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmiA family putative membrane protein"
                     /protein_id="HCS1722770.1"
                     /translation="MISDTDSMRLVMPSENQEPRRDPELKRKAWLAVFVGSALFWVVV
                     ALVIWHWWG"
     gene            1369..1539
                     /locus_tag="OQP62_003311"
     CDS             1369..1539
                     /locus_tag="OQP62_003311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000029022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722771.1"
                     /translation="MSITSERERVVAPPIQSGDDDNTPDTTVFRSVPQHWTLTPQQRA
                     FIDAFADEVSQK"
     gene            1924..4599
                     /gene="acnA"
                     /locus_tag="OQP62_003312"
     CDS             1924..4599
                     /gene="acnA"
                     /locus_tag="OQP62_003312"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HCS1722772.1"
                     /translation="MSSTLREASKDTLQAKDKTYHYYSLPLAAKSLGDIARLPKSLKV
                     LLENLLRWQDGESVTDEDIQALAGWLKNAHADREIAWRPARVLMQDFTGVPAVVDLAA
                     MREAVKRLGGDTSKVNPLSPVDLVIDHSVTVDHFGDDDAFEENVRLEMERNHERYMFL
                     KWGKQAFSRFSVVPPGTGICHQVNLEYLGKAIWSELQDGEWIAYPDSLVGTDSHTTMI
                     NGLGVLGWGVGGIEAEAAMLGQPVSMLIPDVVGFKLTGKLREGITATDLVLTVTQMLR
                     KHGVVGKFVEFYGDGLDSLPLADRATIANMSPEYGATCGFFPIDAITLEYMRLSGRSD
                     DLIELVETYAKAQGMWRNPGDEPVFTSTLELDMGDVEASLAGPKRPQDRVALGDVPKA
                     FAASAELELNTAQRDRQPVDYTMNGQPYQLPDGAVVIAAITSCTNTSNPSVLMAAGLL
                     AKKAVTLGLKRQPWVKASLAPGSKVVSDYLAQAKLTPYLDELGFNLVGYGCTTCIGNS
                     GPLPEPIETAIKKGDLTVGAVLSGNRNFEGRIHPLVKTNWLVSPPLVVAYALAGNMNI
                     NLATDPLGYDRKGDPVYLKDIWPSAQEIARAVELVSSDMFRKEYAEVFEGTEEWKSIQ
                     VESSDTYGWQSDSTYIRLSPFFDEMQAQPAPVKDIHGARILAMLGDSVTTDHISPAGS
                     IKPDSPAGRYLQNHGVERKDFNSYGSRRGNHEVMMRGTFANIRIRNEMLPGVEGGMTR
                     HLPGTEAMSIYDAAMLYQQEKTPLAVIAGKEYGSGSSRDWAAKGPRLLGIRVVIAESF
                     ERIHRSSLIGMGILPLEFPQGVTRKTLGLTGEEVIDIADLQNLRPGATIPVMLTRADG
                     SKETVPCRCRIDTATELTYYQNDGILHYVIRNMLN"
     gene            complement(4655..5245)
                     /gene="ribA"
                     /locus_tag="OQP62_003313"
     CDS             complement(4655..5245)
                     /gene="ribA"
                     /locus_tag="OQP62_003313"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HCS1722773.1"
                     /translation="MQLKRVAEAKLPTPLGDFLMVGFEELATGHDHAALVFGDISGKT
                     PVLARVHSECLTGDALFSLRCDCGFQLEAALTHIAEEGRGILIYHRQEGRNIGLLNKI
                     RAYALQDQGYDTVEANHQLGFAADERDFTLCADMFKLLGVDEVRLLTNNPKKVEILTE
                     AGINIVERVPLIVGRNPNNEHYLDTKAAKMGHLLSK"
     gene            5441..6205
                     /gene="pgpB"
                     /locus_tag="OQP62_003314"
     CDS             5441..6205
                     /gene="pgpB"
                     /locus_tag="OQP62_003314"
                     /EC_number="3.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase B"
                     /protein_id="HCS1722774.1"
                     /translation="MLSIARRTAAGAALLLIMPLAVWVSGWQWQPGHQVWWLKTLFWI
                     TETVTKPWGVITHVILCGWFLWCLRFRLRAAIMLFAILGGAIIVGQGVKSWVKERVQE
                     PRPFVVWLEKTHHIPVDEFYTLKRTERGHLVKEQLAGQQNIPVFLRQHWQKETGFAFP
                     SGHTMFAASWALLAVGLLWPRRRTFTIAFLLVWATGVMGSRLLLGMHWPRDLVVATLI
                     SWLLVTLATWLAQRICGPLMPPREEAQEIAEREQES"
     gene            6355..6663
                     /locus_tag="OQP62_003315"
     CDS             6355..6663
                     /locus_tag="OQP62_003315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LapA family protein"
                     /protein_id="HCS1722775.1"
                     /translation="MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTL
                     LAVLFAVGFAIGWLICGLFWLRVRVSLARAERKIKRLENKLSPATDVAVPADSSVVKE
                     "
     gene            6670..7839
                     /gene="lapB"
                     /locus_tag="OQP62_003316"
     CDS             6670..7839
                     /gene="lapB"
                     /locus_tag="OQP62_003316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000891373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HCS1722776.1"
                     /translation="MLELLFLLLPVAAAYGWYMGRRSAQQTKQDEANRLSRDYVAGVN
                     FLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLT
                     YEQRLLAVQQLGRDYMAAGLYDRAEDMFNQLTDETEFRVGALQQLLQIYQLTSDWQKA
                     IEVAERLVKLGKDKQRIEIAHFYCELALQQMGNDDMDRAMALLKKGAAADKNSARVSI
                     MMGRVYMARGDYAKAVESLQRVIVQDKELVSETLEMLQTCYQQLGKNAEWAEFLRRAV
                     EENTGAGAELMLADILEAREGSDAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRA
                     KESLMVLRDMVGEQVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGQ"
     gene            8030..8767
                     /gene="pyrF"
                     /locus_tag="OQP62_003317"
     CDS             8030..8767
                     /gene="pyrF"
                     /locus_tag="OQP62_003317"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HCS1722777.1"
                     /translation="MTFTASSSSCAITESPVVVALDYHERDKALAFVDKIDPRDCRLK
                     VGKEMFTLFGPQLVRDLQQRGFDVFLDLKFHDIPNTTARAVAAAADLGVWMVNVHASG
                     GARMMAAARDALAPFSKDAPLLIAVTVLTSMGTSDLHDLGVTLSPAEHAERLARLTQQ
                     CGLDGVVCSAQEAVRFKQAFGAAFKLVTPGIRPAGSEAGDQRRIMTPEQALSAGVDYM
                     VIGRPVTQSVDPAQTLKDINASLKREA"
     gene            8767..9093
                     /gene="yciH"
                     /locus_tag="OQP62_003318"
     CDS             8767..9093
                     /gene="yciH"
                     /locus_tag="OQP62_003318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HCS1722778.1"
                     /translation="MSDSNSRLVYSTQTGRIEEPKTAPVRPKGDGIVRIQRQTSGRKG
                     KGVCLITGIEMNDAELTKLAAELKKKCGCGGAVKEGIIEIQGDKRDLIKSLLEAKGMK
                     VKLAGG"
     gene            complement(9213..>9340)
                     /locus_tag="OQP62_003319"
     CDS             complement(9213..>9340)
                     /locus_tag="OQP62_003319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HCS1722779.1"
                     /translation="RNTAIGAGAGALGGAVLTDGSTLGTLGGAAVGGVIGHQVGK"
BASE COUNT         2141 a         2252 c         2624 g         2323 t
ORIGIN      
        1 ttgaagtggt taatcataac cttaacgtct cctctaccgc tgaggggttg tatacttccc
       61 agccggggat cagcaagcag gttaggatgc tggaagatga gcttggcatc cagattttcg
      121 cccgcagtgg taagcatctg actcaggtga cgcccgcagg tcaggagatt attcgtattg
      181 cgcgtgaggt gctttccaaa gtcgatgcca ttaagtcggt cgccggcgag cacacctggc
      241 cggataaagg ctcgctctat attgccacta cccatactca ggcgcgttac gcattgccag
      301 gcgtgattaa aggcttcatc gagcgttacc cgcgcgtttc gctgcatatg caccaggggt
      361 cgccaacgca gattgcggaa gcggtatcga aagggaacgc cgatttcgcg attgccacgg
      421 aagcgctgca tttatatgac gatctggtga tgttgccatg ctatcactgg aaccgttcga
      481 tagtggtgac gccggatcat ccattggcgg caacgtcttc cataacgatc gaagcgctgg
      541 cgcagtatcc gctggtgacg tataccttcg gctttaccgg gcgttccgaa ctggataccg
      601 cttttaatcg cgcagggtta acgccgcgga tcgtctttac tgcaaccgat gcggatgtga
      661 ttaaaacgta tgtcaggttg gggctgggcg ttggcgtcat tgccagcatg gcggtcgatc
      721 cgcttaccga tcctgattta gtgcggattg acgcgcacga tatttttagc cacagcacca
      781 caaaaattgg ttttcgccgt agtacttttt tacgcagcta tatgtatgat tttatccagc
      841 gttttgcgcc acatctgacg cgtgatgtgg tggatacggc ggtggcgttg cgttctaatg
      901 aagaaattga agcgatgttt caggatataa agctgcctga aaagtaatat caccgtgggt
      961 ttgtgtcgta gtggcatggc agacaaagcc gccttttgca atatccctcg aagtattacg
     1021 ggtaatgatc agcaaaatag tgttgaatta cccgtcccgc cagtttcttt ttccaaatag
     1081 ttatcttgag tcaaaagatt gatttattca ctggcaacga ttcgtaaatt gactggattt
     1141 ttgactaaag tttatttagg atttgtctca tctgatgatt aattgtaccg attgtttggt
     1201 gctgaaatga taagtgatac cgatagcatg aggttagtaa tgccttctga aaaccaggaa
     1261 ccgcgccgcg accctgagct caaacgtaaa gcatggctgg cggtttttgt gggttctgcg
     1321 ttgttctggg tagtggtagc gcttgttatc tggcattggt ggggctaagt gagcattacg
     1381 tcggaacgcg agcgcgtggt cgcgcccccg attcaatctg gtgacgatga taacaccccg
     1441 gatacgaccg tttttcggtc tgttccgcaa cactggacgc tcacaccgca gcagcgggca
     1501 tttattgatg cttttgctga cgaggtgtca caaaaataat attcgtcttt ttattggcgt
     1561 tactgtttta ttaacgctgt cttattacac cgcagcaacc gtgtgctgag cgcttctcag
     1621 tattgattaa acacagttgg tgttgcctat gttaacgtca aatataaagt attggtcatg
     1681 gactggcgcg tttatattat cgctactgtt ctgggccgag ttaatctgga ttgccgtcta
     1741 atctcgtcaa agcccgataa tgcgttattt atcgggcttt ttcatcttcg ttcctcgcct
     1801 gttaggtttc tcctctttta gcaatttggg ttgttatcaa aacgttacat tttgtttgtg
     1861 ttatctttaa tacaaccctg tggagaatca gggtaacgca accctgtcat taaaggagga
     1921 gctatgtcgt caaccctacg agaagccagt aaggatacat tgcaggccaa agataaaacg
     1981 tatcattact acagtctgcc gctggctgcc aaatccctgg gcgatatcgc ccgtttgccc
     2041 aaatcactta aagtgttact ggaaaacctg ttgcgctggc aggacggcga atctgtgact
     2101 gatgaagata ttcaggcgct ggccggttgg cttaaaaatg cccatgccga tcgtgaaatt
     2161 gcttggcggc ccgcccgtgt cctgatgcag gactttaccg gcgtgcctgc cgttgtcgac
     2221 ctggcggcga tgcgtgaagc cgttaaacgc ctcggcggcg atacgtcgaa agtgaacccg
     2281 ttatcgccgg ttgatctggt tattgaccac tctgtgacgg tcgatcattt cggcgatgat
     2341 gatgcgtttg aagaaaacgt gcggctggaa atggaacgta accatgagcg ttatatgttc
     2401 ctgaaatggg gaaagcaggc attcagccgt ttcagcgtgg tgccgcccgg caccggcatt
     2461 tgccatcagg ttaacctgga atacctgggt aaagccatct ggagcgaatt acaggacggg
     2521 gagtggattg cttacccgga ctcgctggtg gggactgact cccatacgac catgattaat
     2581 ggtctgggcg tattggggtg gggcgtgggt ggtattgaag cggaagcggc gatgcttggt
     2641 cagcccgtgt cgatgcttat cccggatgtc gtcggcttta agttaaccgg taaacttcgg
     2701 gaggggatca ctgccactga cctggtgcta accgtcacgc aaatgctgcg taagcatggc
     2761 gtcgtgggta aatttgttga attttatggt gacggtctgg attcgctgcc gttggcggat
     2821 cgcgcgacta tcgctaatat gtcgccggaa tatggcgcca cctgtggttt cttccccatt
     2881 gacgccatca ccttggaata tatgcgatta agcggacgta gcgacgatct gatcgagctg
     2941 gttgaaacct acgcgaaggc gcagggaatg tggcgtaatc ccggtgacga accggtattt
     3001 accagtacgc tggaactgga tatgggcgat gtcgaggcca gcctggccgg gccgaaacgc
     3061 ccgcaggatc gcgtggcgtt aggcgatgtg ccgaaagcct ttgccgccag cgccgagctg
     3121 gagctgaata ccgcgcaaag agatcgccag ccggttgact atacgatgaa cggacagcca
     3181 tatcagcttc cggatggcgc tgtcgtcatt gccgccatca cctcctgtac gaatacctcg
     3241 aatcccagcg tgctgatggc ggcgggatta ctggcgaaaa aggcagtaac gctggggttg
     3301 aagcgtcaac cgtgggtcaa ggcttctctg gcgccggggt caaaagtggt atctgactat
     3361 ctggcgcagg ccaaacttac gccttatctg gatgagctcg gttttaacct ggtcggctat
     3421 ggctgtacga cctgtatcgg gaactccggt ccgttgccgg agcctattga gaccgcgatt
     3481 aaaaaaggcg atctgacggt aggggccgtg ctttccggta accgaaattt tgaagggcgt
     3541 atccatccgc tggtgaaaac gaactggctg gtgtcgccgc cgctggtggt cgcgtatgcg
     3601 ctggccggaa acatgaatat taacctcgcg acagacccgc tggggtacga tcgtaaaggc
     3661 gatccggtat acctgaagga tatctggcct tcggcgcagg aaattgcccg cgccgttgaa
     3721 ctggtatcat cggatatgtt ccgtaaagag tatgcggaag tgtttgaggg cacggaagaa
     3781 tggaaatcga ttcaggttga atcgtccgat acctacggct ggcagtcgga ttcaacctat
     3841 atccgcctgt cgcctttctt tgatgaaatg caggcccagc ctgcacccgt caaagatatc
     3901 cacggcgcgc gtatcctggc gatgctgggc gattcggtga cgaccgacca tatttccccg
     3961 gccggcagta tcaagccgga cagtcccgcc ggacgctatc tgcaaaacca cggcgttgag
     4021 cggaaggatt ttaactccta tggatcacgg cgcggcaacc atgaagtgat gatgcgcggt
     4081 acgttcgcca atattcgtat tcgcaacgaa atgctgcccg gcgtcgaagg tgggatgacg
     4141 cggcatttgc cgggtacgga agcgatgtcg atttatgatg ccgcgatgct ctaccagcag
     4201 gaaaaaacgc cgctggcggt aattgccggg aaagagtatg ggtcgggatc gagccgtgac
     4261 tgggcggcaa aaggtccgcg gctgttaggt attcgcgtgg tgatcgccga gtcgttcgaa
     4321 cgtatccatc gctcaagcct gattgggatg gggatcctgc cgctggagtt tccacagggc
     4381 gtaacgcgta aaacgctggg actgaccggg gaagaggtga ttgatatcgc ggatctgcaa
     4441 aatctgcgcc ctggcgcgac cattccggtt atgttaacga gagcggacgg cagcaaagaa
     4501 acggtgcctt gtcgctgtcg cattgatacc gccaccgagc tgacttacta ccagaatgac
     4561 ggcatattgc actatgtcat tagaaatatg ctgaactaaa gccgtttatc gggcctgccg
     4621 taaacaggca ggcccgcgct ttaataccgg tggcttactt gcttagcagg tggcccattt
     4681 tggccgcttt agtatcgaga taatgctcat tatttggatt acgacccaca atgagcggaa
     4741 cgcgttccac gatattaatt cccgcctcgg tcagtatttc gactttcttc ggattattgg
     4801 tcagtaggcg aacttcatcc acgccgagta atttgaacat atccgcgcac agggtgaaat
     4861 cacgctcatc ggcggcaaag ccgagctgat gattggcctc caccgtgtca tagccttgat
     4921 cctgtaacgc ataagcgcga attttattaa gcaggccgat attgcggcct tcctgacggt
     4981 ggtaaatcag aataccgcgt ccttcttccg caatatgcgt cagcgcggct tccagttgaa
     5041 aaccacaatc acagcgcaga ctaaaaagcg cgtccccggt aagacattcg gaatgaacgc
     5101 gagccagtac tggcgtttta cctgaaatat cgccaaaaac cagcgcggca tggtcgtgtc
     5161 cggttgccag ttcttcaaat cccaccatca gaaagtcacc caatggggtt ggcagtttgg
     5221 cttctgccac acgtttaagc tgcatgtatt tctccagatt atgctgacgc ctgcggtgtc
     5281 gtcgcctgtt ggcctgtatc ccgctatttt gccataaggc ggcggtcatc acctaatcac
     5341 taccacgtaa ttgctcagga atggcacaaa tttgtcaatt ttccagtccg gcgagaattt
     5401 tcagttatga ttgtgatact tacttataaa aggagcatcc atgctttcaa ttgcgaggcg
     5461 caccgcggca ggcgccgccc tgttgcttat catgccgctt gccgtatggg tatcaggctg
     5521 gcagtggcag ccaggacatc aggtctggtg gctaaaaacg ctattctgga taacggaaac
     5581 cgtgaccaaa ccctggggcg ttatcacgca tgtgattctt tgtggatggt tcttatggtg
     5641 cctgcgattt cgcctgcgcg ccgccattat gctgtttgcg attctcggtg gggcgattat
     5701 cgtcgggcag ggcgtgaagt catgggtaaa ggagcgcgta caggagccgc ggccatttgt
     5761 ggtctggctt gaaaaaacgc accatattcc cgtcgatgag ttctacactt taaagcgtac
     5821 agaacgcgga catttagtga aagagcagtt ggccgggcaa cagaacatcc ccgttttcct
     5881 gcgtcagcac tggcaaaaag agacgggctt tgcgtttccc tccggacaca ccatgtttgc
     5941 agcgagctgg gcgcttttgg ccgtgggtct gttatggccg cgcagacgga ctttcaccat
     6001 cgcgtttttg ttagtctggg cgaccggcgt aatgggcagc cgtttgcttc tgggaatgca
     6061 ctggccgcga gatttagtgg tcgccacgct catctcctgg ctattagtta ccctggcgac
     6121 ctggctggcg cagcgaattt gcgggccgct tatgccgcct cgcgaagaag cgcaagaaat
     6181 tgctgaacgc gagcaggaaa gctgacaacg gttgattttc tgactattgc ccttaaatca
     6241 tctgatggtg ggcgcatttc catttcgcgc gaggcgggaa aatggtaatt tagaaggctg
     6301 gatgcggtaa gttggacacg atttattcgc gcaaaccaca taacgggaag taatgtgaaa
     6361 tatttactca ttttcttact ggtattggcg atttttgtta tttcggtgac gctgggcgcg
     6421 cagaatgatc aacaggtgac gtttaactac ctgctggcgc aaggggagta tcgtatctcc
     6481 acgttgcttg ctgtgctgtt cgccgtcggt tttgcgattg gctggctgat ttgcggcctg
     6541 ttctggctgc gggtccgcgt ttcccttgcc cgcgctgaac gtaaaattaa acgactggaa
     6601 aacaagctct cgccagcaac cgacgttgcg gtccctgccg attcgtcggt tgtaaaggaa
     6661 taatcattta tgttggagtt gttatttctg ctgttgcctg tagccgctgc ctatgggtgg
     6721 tatatgggtc gcagaagtgc gcaacaaaca aaacaggatg aagctaaccg cctgtcgcgc
     6781 gattatgtcg caggggttaa cttcctgctg agtaaccaac aagataaagc ggtggatctg
     6841 ttcctcgata tgcttaaaga ggataccggc accgttgagg ctcatctcac tctcggtaat
     6901 ttgtttcgct ctcgcggcga agtcgatcgc gccattcgta ttcatcaaac gctcatggaa
     6961 agcgcttcat tgacctatga acagcgttta ctggctgttc agcaactggg gcgcgactat
     7021 atggccgccg gtttatatga ccgcgcggaa gatatgttta accaacttac cgacgaaacg
     7081 gaatttcgcg taggcgcgtt acagcagctc ttgcaaatct atcagctaac cagcgactgg
     7141 caaaaggcga tcgaagtagc agaacggctg gtgaaactgg gcaaagataa acagcgtatc
     7201 gaaatcgccc acttttactg tgagttagcg ttacagcaga tgggcaacga cgacatggat
     7261 cgcgcgatgg cgttgctgaa aaaaggtgcc gccgcagata aaaatagcgc ccgggtgtct
     7321 atcatgatgg ggcgcgttta tatggcgaga ggggattacg ccaaagcggt cgaaagcctg
     7381 caacgtgtga tcgttcagga taaagagctg gtcagcgaaa cgctggagat gttgcaaacc
     7441 tgttatcaac agctcggtaa aaatgccgag tgggcggagt ttttacgtcg cgccgttgag
     7501 gagaataccg gtgctggcgc tgagttaatg cttgccgata ttctggaagc gcgtgaaggt
     7561 agtgacgcag ctcaagtcta tatcacgcgt cagctacagc gacatcctac catgcgggtg
     7621 ttccataagc tgatggatta ccatctcaat gaggcggaag aagggcgagc gaaagaaagc
     7681 ctgatggtac tgcgtgatat ggttggcgag caggtgcgca gtaaaccgcg gtatcgttgt
     7741 cagaaatgcg gttttaccgc ctataccttg tactggcact gtccgtcctg ccgggcatgg
     7801 tcgaccatta aacctattcg cggacttgat gggcagtagt atataaaaaa aacctcactt
     7861 tagttacaac atacttaatg acataagaca agaaacgacg ctggcatcgg cggccagggc
     7921 ttatcaggtt gtcaatcgaa cctgttaatt tccctgcgcc gcaggtagaa tgcacgccgt
     7981 ttatccaatt tgcgccactt ccggtgccca tcatcaagaa ggtctggtca tgacgtttac
     8041 tgcttcatct tcttcctgcg ctattactga atcgcctgtc gttgtggcgt tggattacca
     8101 tgaacgcgat aaagccctgg cgtttgtcga taaaatcgat cctcgcgatt gtcgcttaaa
     8161 agtgggcaaa gagatgttca cgctgtttgg tccacaactc gttcgggatc tccagcaacg
     8221 tgggtttgat gtctttcttg atctaaaatt tcatgatatt cccaacacca cggcccgggc
     8281 agtcgccgca gcggcagacc tgggcgtttg gatggtaaac gttcacgcgt ctggtggggc
     8341 gagaatgatg gccgcagcgc gcgacgcgct ggcgccattc agtaaagatg cgccgttgct
     8401 cattgccgtg accgtgttga ccagtatggg aaccagcgat ctacacgatc tgggcgtgac
     8461 gttgtcaccg gcggaacatg cggagcggct ggcgcgcctg acgcagcaat gcgggctgga
     8521 tggcgtggtc tgttccgctc aggaagctgt cagatttaaa caggcctttg gcgctgcatt
     8581 taagctggtg acgccgggca ttcggcccgc aggcagcgag gcaggcgacc agcgacgcat
     8641 tatgacgccc gaacaggcat tatccgctgg cgtcgactat atggtgattg gccgcccggt
     8701 tacgcaatcg gtagatccgg cgcaaacgct gaaggatatt aacgcgtcac tgaaacggga
     8761 ggcataatga gcgattccaa tagtcgtctg gtttattcaa cacagacggg gcgcattgaa
     8821 gaacctaaaa cggcgccggt tcgtcccaaa ggggatggta tcgttcgcat tcagcgtcaa
     8881 accagtggcc gtaagggtaa aggcgtatgt ttgattaccg gtatcgagat gaatgatgcg
     8941 gaattaacca aactggcggc tgaactgaag aaaaaatgcg gctgtggcgg ggcagtaaaa
     9001 gaagggatta ttgaaattca gggtgataaa cgcgacttga taaaatcatt gctggaagct
     9061 aaaggaatga aagtaaaatt agctggcggc taatgaaaac gccacggttg taaattgccg
     9121 tggcgtaaaa gtcaactttg tctatttttg taatccagac ctgaaaagaa taaacgtatt
     9181 attttgagcc gttcaatatt taaacgtctg gattattttc caacctggtg accaatcacg
     9241 ccgccgaccg ccgcgccgcc cagggtgcct aatgtactgc cgtccgttaa cactgcgccg
     9301 cctaacgccc ccgcacctgc gccaatagcc gtgttgcgat
//
LOCUS       DAJVSD010000180         9335 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.180, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000180 DAJVSD010000000
VERSION     DAJVSD010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9335
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.180"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..399
                     /locus_tag="OQP62_003320"
     CDS             <1..399
                     /locus_tag="OQP62_003320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001009036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1722780.1"
                     /translation="FGERLQRVLNETGITQSELGRRVGATSQSVNGWCQSGILPRKDI
                     LELLPKATGKPLYWFFMEDDDESDVPERLTQGGPTDLNDRQKRLLEIFDQLPTVEQDR
                     FIELAGTRLQELDDFMAEYQRRRKIEPPSR"
     gene            688..888
                     /locus_tag="OQP62_003321"
     CDS             688..888
                     /locus_tag="OQP62_003321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000186242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HCS1722781.1"
                     /translation="MTNYGTTTLPRTSVVPGMLVKYQGRTYRASANVGKGLYLFTLFE
                     RLRTTNDEIEVYLNQHGKPATH"
     gene            979..1275
                     /locus_tag="OQP62_003322"
     CDS             979..1275
                     /locus_tag="OQP62_003322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001528639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host-nuclease inhibitor protein Gam"
                     /protein_id="HCS1722782.1"
                     /translation="MNAYLTYDRIEAQDWTRHYQQIAREEKESELADDLEKGLSLHML
                     ESLCMDELPRHGANKKAISRAFDDDVEFQERASEFVRYMAETFSRHQIDIESEE"
     gene            1281..2066
                     /gene="bet"
                     /locus_tag="OQP62_003323"
     CDS             1281..2066
                     /gene="bet"
                     /locus_tag="OQP62_003323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage recombination protein Bet"
                     /protein_id="HCS1722783.1"
                     /translation="MSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQF
                     IALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNE
                     SCTCRIYRKDRNHPICVTEWMDECRREPFKTRDGREITGPWQSHPKRMLRHKAMIQCA
                     RLAFGFAGIYDKDEAERIVENTTYTTDRQPERDITPVSDETMREINDLLITLNKTWDD
                     DLLPLCSQIFRRDIGASSDLTQIEAVKALGFLKQKAAEQKVEA"
     gene            2063..2743
                     /locus_tag="OQP62_003324"
     CDS             2063..2743
                     /locus_tag="OQP62_003324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaJ viral recombinase family protein"
                     /protein_id="HCS1722784.1"
                     /translation="MTPEIILARTGIDVSNIEQGDDAWHRLRLGVITASEVHNVISRP
                     KSGKKWTDMKMSYFLTLLAEVCTGVAPEVNARALAWGKQYEDDARTLFEFTTDVKVTG
                     SPILFRDEDMRTACSPDGLCSDGRGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQF
                     SMWVTGIDAWYFANYDPRMKREGIHHVVVERDDKYMSLFNEMVPEFIEKMDEALKEIG
                     FTFGEQWR"
     gene            2821..3885
                     /locus_tag="OQP62_003325"
     CDS             2821..3885
                     /locus_tag="OQP62_003325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001373762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DGQHR domain-containing protein"
                     /protein_id="HCS1722785.1"
                     /translation="MSKIGDYFFEFPASRGLQGNTVVLMMTVPARALTRVLASDNHGN
                     TLERSQRELNPARAKKFYEYLRTAYEKKEPFIIPPLVGNCDSFIEFEEFGNTNVGVAR
                     FPMDAEIKLFDGQHRAAGIAEFCRTYGEPIHIPMMLTHQLPLKTRQQFFSDINNNVSK
                     PSAAINMAYNGRDKIAQDMVSFLSSHAMFSEITDFEHNVVPAKSDLWISFKPLSDATA
                     KFSGNGDELATSDIYDIWEAWLKLTAIKGIRHGCTPVEYKRDYIQFHAVMINAFGYAM
                     QELLRHRPAHIIVQMIEELVNNSTMSELENFFLISSWSGVCASTEKDRATVIASVASQ
                     KAASVRLIQAITTKSFEVAA"
     gene            3882..4763
                     /locus_tag="OQP62_003326"
     CDS             3882..4763
                     /locus_tag="OQP62_003326"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HCS1722786.1"
                     /translation="MRYGSVCSGTAAMPIEEPALRTWRRPFLKWAGGKYSLLPELDRL
                     IPAGKRLIEPFVGGGSVFLNSDKHERFLLADVNADLINLYQMLAVVPDSVIAEAMKAF
                     RHLNDAENYTVIREAFNAQKLNATERAAAFLYLNRHCFNGLMRYNLDGFFNVGWGKYK
                     APYFPEEEIRAFRQKSHACVFMTAGFERTLRLAGDGDVVYCDPPYEPMPGTAGFTNYA
                     SGGFSWDSQVALAESCVAAHQRGAKVFISNSTAPRVIELYERHGFTLHRVNARRSISS
                     KGSTRETANDIVASLGI"
     gene            4769..5008
                     /locus_tag="OQP62_003327"
     CDS             4769..5008
                     /locus_tag="OQP62_003327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4060 family protein"
                     /protein_id="HCS1722787.1"
                     /translation="MKLINRSKQSPVGRRACDIALAAHHEKFGDYGRQKHVTNYTVVV
                     DGVKVPVEVVNRATSYVATAMIGVRKLRNLPAQAN"
     gene            5049..5297
                     /locus_tag="OQP62_003328"
     CDS             5049..5297
                     /locus_tag="OQP62_003328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excisionase family protein"
                     /protein_id="HCS1722788.1"
                     /translation="MSNIIQLTPNKWVSEKVLIAVTGLKPGTITRARKESWMLGREYL
                     HISPDGNPKPSSECIYNREAVDQWIEAQKKNQPGAKTT"
     gene            5342..6634
                     /locus_tag="OQP62_003329"
     CDS             5342..6634
                     /locus_tag="OQP62_003329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3596 domain-containing protein"
                     /protein_id="HCS1722789.1"
                     /translation="MANASYPTGVENHGGSLRIWFLYKGKRVRENLGIPDTAKNRKIA
                     GELRSSVCFAIRMGNFNYVEKFPNSTNLARFGQDRKEITVLELTERWSELKRMEISSN
                     TMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLTGFQVMKKDHRTQVKGRKSS
                     TVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKGEPDPLTTDEFIRFIQACGHQ
                     QMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRNLTQTDEFTLPKTDAGTDRV
                     IYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPCTFVFSPQCVKRGPRTGY
                     HYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANPNFIATQMGHTDAQMV
                     YKVYGKWMSEKSAEQVSLLNQALSRYAPSLPQSMVAAQ"
     gene            6829..8031
                     /gene="pncB"
                     /locus_tag="OQP62_003330"
     CDS             6829..8031
                     /gene="pncB"
                     /locus_tag="OQP62_003330"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HCS1722790.1"
                     /translation="MTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVQVAAEFRCRGD
                     DLLGIYADAIREQVDAMQHLRLQEDEFQWLSGLPFFKPDYLNWLREFRYNPAQVCVTN
                     DNGKLNIRLTGSWREVIMWEVPLLAVISELVHHYRSPNAGVDQALDALESKLVDFTAL
                     TANLDMSRFHLMDFGTRRRFSREVQQAIVKRLQQESWFVGTSNYDLARRLALTPMGTQ
                     AHEWFQAHQQINPDLATSQRAALAAWLNEYPDQLGIALTDCITMDAFLRDFGIEFASR
                     YQGLRHDSGDPVAWGEKAIAHYEKLGIDPLTKTLVFSDNLDLPKAVELYRHFASRVQL
                     SFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFD
                     LPQVRKAS"
     gene            complement(8112..>9335)
                     /locus_tag="OQP62_003331"
     CDS             complement(8112..>9335)
                     /locus_tag="OQP62_003331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HCS1722791.1"
                     /translation="SIEVAATVLSGSLGAGTIAGVAAAIAVGGPGAIFWMWIIAVVGM
                     MTKMVEVTLAVKYRSKGENGEYYGGPMHYIKKELNKKWYPLAGLYAFALMILVITDAC
                     FVQTNTMAAVIHYTFDIPTSVIGGFIVIVGALVILKGLASLGKFCTIALPPITIAYFI
                     GAAGVVVLNIEAIPQVIKSIFYYAFAPAPAAGGFVGSTIMMAISKGASRGIFTNEAGM
                     GTSATVHATANVDYAFRQGMWGAVEVFFVSMITCNFTAFAVLASGMWTDASYQGIQII
                     FAALKETWHPIIVQVLCLGVALILFTSYLGSYIKFRTSINYIFGDKLERIIKWLYFLP
                     PLIAVNMEIPVIWLMADIAVGFLVIPNVIALFLLRKEFISEFNLFRTRTQRDTNSEKT
                     TQITHVNMSKSEGEE"
BASE COUNT         2527 a         2290 c         2347 g         2171 t
ORIGIN      
        1 tttggagagc gtttacaaag agtgcttaat gagactggga tcacccaatc tgagttaggt
       61 cgtagagtcg gcgctacctc tcaatcagtt aatggttggt gtcagtccgg cattcttccc
      121 cgaaaagata tcttagagtt gttacctaag gccacgggta agccgttgta ttggttcttc
      181 atggaggatg atgatgaatc ggatgtgcct gaacgtctaa cacaaggtgg tccaacagat
      241 ctcaatgacc gacaaaagcg gctcttagaa atatttgatc agctaccgac tgttgaacaa
      301 gaccgtttta ttgagctggc aggcaccaga cttcaagaac tagacgattt catggctgaa
      361 taccaaagac gcagaaaaat cgagcctcct tctcgctaaa ccagctttaa aactactaac
      421 cgccttaact ggcggttttt ttatgtcatt aattcaccca catctcgctt tcttaatctt
      481 ccctgtaaaa ttaatcatca aatttaattg acatgtatcg attgaatcga taatacttaa
      541 cctatcaacc gcagcaacga gtcatcaagg caggacgccc acgaagtagc cgcccggggc
      601 atacgaagac cgggatgaga tggcaaggtt aacgcgcagc aggtgataaa cgttccgctg
      661 gccggcgata aggcaaacga gggtgagatg actaattacg gcacaacaac attaccaaga
      721 accagcgttg taccgggaat gctggttaag taccaggggc gcacataccg cgcatctgca
      781 aacgtaggaa aagggttgta cttgtttacc cttttcgaac gcctgcggac aaccaacgac
      841 gagatcgagg tttacctcaa ccaacacggc aaacctgcaa cccattagca ggaaaaacca
      901 gcaaaacgaa atactgcaca gattctggca gaccacatgg tgtcggggat tctgcaaacc
      961 aaattcagga gttcagccat gaacgcatat ctcacttacg accggatcga ggctcaggac
     1021 tggacccggc attaccagca aatcgccaga gaagagaaag agtcagaact tgctgacgat
     1081 ctggagaaag gactgtcgct tcacatgctg gagtcgctgt gtatggacga gctaccacgc
     1141 cacggcgcca acaaaaaagc gatcagccgg gcatttgatg acgatgtcga attccaggag
     1201 cgcgcgtcgg agtttgtgcg gtacatggcc gagacgtttt cccggcatca aattgatatt
     1261 gaatcagagg aataagacaa atgagcacag cactcgcaac actggcagga aaactggctg
     1321 aacgtgtagg aatggattct gtagatccgc aggaactgat cactacattg cgccagacag
     1381 cgtttaaagg tgatgccagt gatgcgcagt ttattgcgtt actgatagtc gccaaccagt
     1441 acggtcttaa tccgtggacg aaagaaattt acgcctttcc tgataagcag aacgggatcg
     1501 tccctgtggt gggcgttgat ggctggtccc gtatcatcaa cgaaaaccag cagtttgacg
     1561 gtatggattt tgagcaggat aacgaatcat gtacatgcag gatttaccgt aaggaccgta
     1621 accatccgat ctgcgttacc gaatggatgg atgaatgtcg ccgggaacca ttcaaaaccc
     1681 gtgatggtcg tgagattact ggaccgtggc agtcacatcc caaacggatg ttgcgacaca
     1741 aagcaatgat ccagtgcgcc cgtcttgcct tcggtttcgc aggtatctac gacaaggatg
     1801 aggccgaacg cattgtcgaa aataccacgt ataccacaga tcgccagccg gaacgcgaca
     1861 tcactccggt tagcgatgaa accatgcggg aaattaatga tctgctgatc accctgaata
     1921 aaacatggga tgacgatctg ctgccgctct gctcccaaat cttccgtcgc gatattggtg
     1981 catcgtcaga tcttacgcaa atcgaagcag tgaaagccct cggattcctg aagcagaaag
     2041 cagcagaaca gaaggtggaa gcatgacacc agaaattatc ctggctcgta caggtattga
     2101 cgttagcaac atcgagcaag gtgatgacgc gtggcaccgt ctacgcctcg gtgtcatcac
     2161 tgcttccgaa gttcacaacg tcatttccag gccaaagtcg ggcaagaagt ggactgatat
     2221 gaagatgtcc tactttctca cccttcttgc cgaagtttgc accggcgtgg caccggaagt
     2281 taacgccagg gcgctggcct gggggaaaca gtatgaagat gatgcccgca ccctgtttga
     2341 gttcaccact gacgtgaaag tcaccgggtc gccgatcctt ttccgtgacg aggacatgcg
     2401 taccgcctgt tctcctgacg gcctgtgcag tgatggccgc ggtcttgagt tgaaatgccc
     2461 tttcacctct cgcgacttta tgaaattcag gcttggcggc ttcgaggcta tcaaatccgc
     2521 ctatatggcc caggtgcaat tcagcatgtg ggtaaccggg atagatgcct ggtatttcgc
     2581 gaattatgac ccgcgcatga agcgagaagg cattcaccac gtggttgttg agcgcgacga
     2641 caaatacatg tccctcttca atgaaatggt accggaattt atcgaaaaga tggacgaagc
     2701 gctaaaggag attggcttca cgttcgggga gcagtggcga tgacgcacgc acaggacgaa
     2761 atcagggttg gcgcgatgcg ccatcccatg ttgaagaatt aaatgttaga ggacggaagt
     2821 atgagcaaaa ttggtgacta tttctttgaa ttcccggcat caagaggctt acagggaaat
     2881 acggttgtgt tgatgatgac agtcccagcg cgcgcgctaa ctcgcgttct ggcatcagat
     2941 aaccacggca atacgcttga gcgttctcag cgagaactca atccagcgcg tgcgaagaag
     3001 ttttatgaat acctgcgaac agcttacgag aaaaaagagc cgttcatcat cccgccgctg
     3061 gttggaaact gcgactcatt cattgagttc gaagagtttg gcaatacgaa tgtgggtgtc
     3121 gcgcgattcc caatggatgc ggaaattaaa ctgtttgacg gtcagcatcg cgccgcaggc
     3181 attgcagagt tctgccgcac ttacggagag cctattcaca tcccaatgat gctgacacac
     3241 caactgccgc tcaaaacgcg ccagcagttc ttttccgaca tcaacaacaa cgtatcgaag
     3301 ccatcagcgg ccatcaatat ggcctataac ggtagggata aaattgctca ggatatggtt
     3361 tcgtttttgt catcccatgc catgttctca gaaataacag actttgaaca caacgtggtt
     3421 ccggcgaaaa gcgatctctg gattagcttc aaacccctga gtgatgcaac tgcaaaattc
     3481 tctggtaatg gggatgagct tgctactagt gacatctatg acatttggga ggcatggctc
     3541 aagctaacag ccatcaaggg aattaggcat ggttgtacgc ctgttgaata taagcgggat
     3601 tacatccagt tccacgcggt gatgatcaat gcgtttggct acgcaatgca ggaactacta
     3661 cggcatcgcc ctgcacacat cattgttcag atgattgagg agttagtaaa taattccact
     3721 atgagtgagc tggagaattt cttcctcatt tcatcctggt ccggtgtctg cgccagcact
     3781 gaaaaagata gagcgacagt tattgccagc gttgcttcac aaaaagctgc ttcggtgaga
     3841 ctaatccaag ctattacgac aaagagcttt gaggtcgcag catgagatac ggctctgttt
     3901 gcagtggaac tgcggcgatg cccatagagg aaccggcgct gcgcacctgg cgccgcccgt
     3961 tcctgaaatg ggcaggcggt aaatattcgc tgctgccgga actggatcgt cttatcccgg
     4021 caggtaaacg actgatagag ccatttgtgg gcggcggatc ggtgtttctt aactcagaca
     4081 agcacgaacg cttccttctg gctgacgtca acgctgacct gattaacctg taccagatgc
     4141 tggccgtagt gcctgattcg gtaatcgcag aggctatgaa agctttcaga catctgaatg
     4201 atgccgaaaa ctacacagta attcgtgaag cattcaacgc ccagaaactg aatgcgacag
     4261 aacgagcggc cgcattcctt tacctcaaca ggcactgctt taacggtctg atgcgttaca
     4321 accttgacgg ttttttcaat gttggatggg gaaagtataa agccccatat ttcccggaag
     4381 aagagatcag ggcattcagg cagaagtctc acgcgtgcgt atttatgact gcgggtttcg
     4441 aacgtactct caggctggcg ggtgatggtg atgtcgttta ctgcgatccg ccatacgagc
     4501 caatgcccgg caccgctggc ttcactaact acgcctccgg tgggttctca tgggatagcc
     4561 aggtagcgct tgctgaaagc tgtgtggcag cccatcagcg tggcgcaaag gtgtttatca
     4621 gtaattctac cgcaccacgc gttattgaac tttacgagag gcacggcttc actctgcacc
     4681 gggtcaatgc ccgcagatca atatcgagta aaggcagtac ccgagaaaca gcgaacgata
     4741 tcgtcgcctc actggggatt tagtgatgat gaaacttatt aacagaagta agcaatcacc
     4801 agtcggtcgt cgcgcatgtg atattgcact ggctgcgcat catgagaagt tcggcgatta
     4861 cggcagacaa aagcacgtta ccaattacac cgttgtagtg gatggcgtaa aggttcctgt
     4921 cgaagtagtt aaccgggcca ccagctacgt agccaccgca atgatcggcg tccggaaact
     4981 tagaaatctg ccagcacagg caaactgaat attagcgatg gcccgctgcg gggccactgg
     5041 agaaaacgat gagcaacatt atccaactga cgccaaacaa gtgggttagc gaaaaagttc
     5101 tgattgcggt taccgggctt aagcccggaa ccattacccg cgccagaaaa gaatcctgga
     5161 tgctgggccg cgagtacctg cacatttcac cagacggaaa tccgaagcct tcgagcgaat
     5221 gcatatacaa cagagaagcc gttgatcagt ggatcgaggc gcagaaaaaa aatcaaccag
     5281 gtgcgaagac aacatgaaaa gcagtacact cgtcaatgct cctggacgtc aggagggatt
     5341 aatggctaat gcatcatacc cgacaggcgt cgaaaaccac ggcggttcgc tccgcatctg
     5401 gtttctgtat aaaggtaaac gtgtcaggga aaaccttggt atccctgaca ctgcaaaaaa
     5461 tcgcaagata gctggcgaac tgcgttcttc ggtttgtttt gcgataagga tggggaattt
     5521 taactatgtg gaaaaattcc caaactcaac gaaccttgcc cggttcggtc aggatagaaa
     5581 ggaaattact gtgctggagc ttaccgaaag atggtccgag ctgaagagaa tggagatcag
     5641 ctctaatacc atgagtaggt acgaatctat cataaaaaac atgcttccac tcatcggcga
     5701 aaacaaaatg gtttctgcgg tgactactga ggatttgctg tatgtcagga aggagttgct
     5761 gacgggcttt caggtaatga agaaggatca ccggactcag gttaaaggcc ggaaatcgtc
     5821 cacagtgaat aattacatga tgctgatggc cgagatcttc cagtttggaa cagataacgg
     5881 ctatgcaaag gaaaacccgt ttagcggaat taaccgtctc aagaaagcga aaggggaacc
     5941 agatccactc acgacagacg agttcatcag gtttatccag gcatgcggcc accagcagat
     6001 gagaaatctc tggtcactgg cagtctatac cggaatgagg catggggagt tgtgcggtct
     6061 ggcctgggaa gatatcgatc tgcatgccgg gacgatcatt gtgaagcgca accttaccca
     6121 gacggatgag ttcaccctgc caaaaaccga cgcaggtact gacagggtga tatatctcat
     6181 tcaaccagct attgatgccc tgaggaatca ggcccagttg acacgccttg gccggcagtt
     6241 tgaggttgaa gtgaagttgc gggaatatgg acaatctgtc attcagccct gcacgttcgt
     6301 attcagccct caatgcgtca aacgtggacc tcgcacagga tatcactacg cggttaattc
     6361 cattaataaa atttgggccc cgataatcaa gcgtgccggc attcgttacc gtaacgcgta
     6421 tcagtcacga catacctatg catgctggtc attatcagct ggtgctaacc caaactttat
     6481 agcaacgcag atggggcata ccgatgcaca gatggtttac aaggtgtatg gaaagtggat
     6541 gtcagagaag agcgcagaac aggtttctct gctcaaccag gcactttccc gctatgcccc
     6601 atcactgccc caaagcatgg tagcagcgca gtagaaatcc ttaaattcaa ggggttagca
     6661 gtcgcatcgc tacattttta taacatgggg cacgaaatgc gctcgaccct aaagacagct
     6721 tatggtgtga tcggggttca ataaatcgct aaacaaggta tactccagcg gttttcttag
     6781 ttgtttattg tactaaacac tcccgtgaga ggacgcaaca gcgcacctat gacacaattc
     6841 gcttctcctg ttctgcactc gttgctggat acagatgctt ataagttgca tatgcagcaa
     6901 gccgtttttc accactacta tgatgtgcag gtagcggctg agtttcgttg ccgtggcgac
     6961 gacctgctgg gtatttatgc cgatgctatt cgcgagcagg tggacgcgat gcagcacctg
     7021 cgcctccagg aggacgagtt ccagtggctc tccggcctgc ccttttttaa accggattat
     7081 ctgaactggt tacgcgagtt tcgctataac ccagctcaag tctgtgtcac caacgataac
     7141 ggcaagctga atattcgctt aaccggctcg tggcgtgaag tcattatgtg ggaagtgccg
     7201 ctgctggccg tgatcagtga gctggttcat cactaccgct cgccaaacgc gggcgttgat
     7261 caggcgctcg acgcgctgga aagtaagctg gttgatttca ctgcgttaac cgccaatctc
     7321 gatatgtccc gcttccacct gatggacttc ggcacccgcc gccgtttctc tcgtgaagtg
     7381 cagcaggcga tagttaaacg tctccagcag gagtcatggt tcgtcggcac cagcaactat
     7441 gatctcgcgc gtcgcctggc gctgacgccg atgggcactc aggcgcacga atggttccag
     7501 gcgcatcaac aaatcaatcc ggacctggcg accagtcagc gtgccgcgtt ggccgcctgg
     7561 cttaacgaat atccggacca gcttggtatc gcattgacag attgcattac aatggatgcg
     7621 tttttacgcg atttcggcat tgaattcgcc agccgttatc aggggttacg ccacgactca
     7681 ggagaccctg tcgcatgggg cgaaaaggcg attgcccatt atgaaaagct ggggattgat
     7741 ccgctgacaa aaacgctggt cttttcagat aaccttgatc tgccaaaggc ggtcgagctc
     7801 tatcgccatt tcgcctctcg cgtgcagtta agcttcggca tcggtacccg actgacctgc
     7861 gatatccctc aggtaaaacc gctcaatatc gtgattaagc tcgtggaatg taacggaaag
     7921 ccggtggcta aactttccga cagccccggt aaaacgatct gtcatgataa agcgtttgtg
     7981 cgcgcgctgc gtaaagcgtt cgatctcccg caggtgcgta aagcaagtta accatgcctg
     8041 tgcgaagcgc ccggaaagtg ggcgctttgt tactcttctg accatcttac ctgttctggc
     8101 cgcgatggtg actattcttc cccttcactc ttcgacatat ttacgtgcgt gatttgcgtt
     8161 gttttttcag aattagtgtc ccgctgtgta cgcgttctga ataaattgaa ttcgctaata
     8221 aattctttac gcagcaagaa cagagcaatt acgttgggga taaccagaaa accgacagca
     8281 atatcagcca ttaaccagat taccgggatt tccatattaa cggcaatcag tggcggcaaa
     8341 aaatatagcc atttaatgat gcgttctagc ttatcgccaa agatatagtt tattgaagtg
     8401 cgaaatttaa tatatgaacc aagataagaa gtaaacagaa tcaacgccac accgagacag
     8461 agaacctgaa caataatcgg atgccatgtt tcttttaagg cggcaaagat aatctgaata
     8521 ccttgataac tggcgtctgt ccacatacca gaagcaagta cagcaaatgc ggtaaagtta
     8581 caggtaatca ttgaaacaaa aaatacttcc actgcccccc acattccctg acggaaagca
     8641 taatccacgt tggcagtagc atgtactgtg gccgaggtac ccatgccggc ttcgttagtg
     8701 aatattccgc gactggctcc tttactgatg gccatcatga tggttgaccc gacaaagcca
     8761 ccggctgctg gcgcaggggc aaaggcataa tagaaaatac tttttataac ctgtgggata
     8821 gcctcgatat tcaataccac tacaccagcg gcaccaatga aataggcaat ggtgatcggt
     8881 ggaagtgcaa tcgtacagaa tttaccaaga ctggcgagtc cttttaaaat aaccaacgcg
     8941 cctacgatga caataaatcc cccaatgacg cttgttggga tgtcaaacgt atagtgaatg
     9001 accgccgcca tcgtattagt ttgcacaaaa caggcatccg taataaccag aatcattaat
     9061 gcaaacgcat ataatcctgc caggggatac cattttttat tgagctcttt cttaatataa
     9121 tgcattgggc cgccataata ttcgccattc tcacctttac ttcggtattt caccgccagc
     9181 gtcacttcaa ccattttggt catcataccc acgaccgcaa tgatccacat ccagaaaatt
     9241 gccccaggtc cgccaaccgc aatagccgca gcaacacctg cgatcgttcc cgcgcctaat
     9301 gagccggata gcacagtggc agccacctct attga
//
LOCUS       DAJVSD010000181         9260 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.181, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000181 DAJVSD010000000
VERSION     DAJVSD010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9260
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.181"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..873
                     /gene="tagK"
                     /locus_tag="OQP62_003332"
     CDS             <1..873
                     /gene="tagK"
                     /locus_tag="OQP62_003332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system-associated protein
                     TagK"
                     /protein_id="HCS1722792.1"
                     /translation="IQSQGITDNAQYPAGTYIVFTAAAPYIPLFEQHGKDDIALSLVR
                     HEEAWWIVNHSDELCCAVNEQVMEPHHRMRLNDGDTIEWGLSSWCLARTNDESRPDVS
                     FPQLVQSSESVAEYLDLDWFKQQQLNPQNPFDIIPVRETAPSYTGHEADSTLHQLYQE
                     YQQALRPSGQEKPLRPKPFPRNEDAVTQDLTSLYDKKGDTDTLQDMVAGAPGIDAILD
                     TLDTTGEGEMHWLAMESMPDILQLLSPEMGGKTAHSEILPDLTRREHRIIGIDSHYRI
                     TPTQKNGNTAHEKN"
     gene            860..1684
                     /locus_tag="OQP62_003333"
     CDS             860..1684
                     /locus_tag="OQP62_003333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="impE family protein"
                     /protein_id="HCS1722793.1"
                     /translation="MKKTDTLPATLSALLQEYSIAEGIQMAEQQVRENPAKALCRHSL
                     FQLLCVAGDWARALHQLQLCARMEANYTQEARLYRELVCCEMFRHTVFQGEQRPGFLL
                     PQPVWVESLLAALACHDDTGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPV
                     LELVTGGVYIWLPFSQIRSLESPQPTRLTDLLWKPVNITLVNGDTHGAWLFTRYSGSE
                     SASDALRLCRETAWQDGPGETTVRALGQKVWLTSHGDISLLDMTHCTFHAQENDGA"
     gene            1681..2175
                     /gene="tssE"
                     /locus_tag="OQP62_003334"
     CDS             1681..2175
                     /gene="tssE"
                     /locus_tag="OQP62_003334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssE"
                     /protein_id="HCS1722794.1"
                     /translation="MSTSRFTPANHLLPTLFDRLCDNAPYQKIDRDISVTPVQLKEII
                     RRDLSFLLNTISHEGDIDARRYPQAAASVLNYGLPPLAGSFMYEHKWDDISEAIRRAI
                     IRFEPRLNAATLRVTPLLDEARQGSYNTLQFEIRGQILTQPYPTEFLVRSALDMELSR
                     ITFF"
     gene            2191..4074
                     /gene="tssF"
                     /locus_tag="OQP62_003335"
     CDS             2191..4074
                     /gene="tssF"
                     /locus_tag="OQP62_003335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssF"
                     /protein_id="HCS1722795.1"
                     /translation="MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADP
                     YVERMIEAFSFLSARTQLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEG
                     DLAKGVTVPRDTAFVSPIPEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHR
                     YLPPNIHVAGALRITLRTFGELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVAT
                     LAGEPGHFDGELNVNLQHPVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFF
                     TPTGLSAGLQKVQGNVAEIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRI
                     EVTHSVTEQHLVVDRTRPLDYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGR
                     YFSLRREPRRSSESARRYGTRTPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRD
                     LPCLIPRNGRDDLTVDAAIPVAGVGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLA
                     DLDHRTGGQALRDLLNLFIPAHDSPQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVS
                     CELTVDEEGFSGISPYLFGLVLEHYIARHVSINTFSQMTLHSMQRGHVMTWPVRTGQR
                     GSV"
     gene            4071..5066
                     /gene="tssG"
                     /locus_tag="OQP62_003336"
     CDS             4071..5066
                     /gene="tssG"
                     /locus_tag="OQP62_003336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
                     /protein_id="HCS1722796.1"
                     /translation="MTGALDQAQKAPWRYGFLNLMRRVDAQLCDTPAGSIWQPRMEKF
                     RLGQTPTMTFAPREIAQVSWQDGRLHLSLYSLGLWGPNGPLPLHYTELALNRSESRHD
                     PTLVHFSNIFHYRWLTQFWQAWRSGQSAGGGLDKPEHDRFAFYIASISGQDLRESAES
                     PLSDHVRLAASAHLVRESRNPDGLAATLAHYFSVPFAVKEFALHWITVANDEITRLGT
                     PAQSSVLGNGALIGQAVPDMQYKFRLIIGPLTLEDYLRFLPGGNNLPVLTELVRTFIG
                     FEYCWEIELQLKPHAAPPAVIGGAQRLGWTAWAGKAMHDRPVTGMIFEPEHGLTH"
     gene            5077..6131
                     /locus_tag="OQP62_003337"
                     /pseudo
     CDS             5077..6131
                     /locus_tag="OQP62_003337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459263.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ImpA family type VI secretion system protein"
     gene            complement(6451..6527)
                     /locus_tag="OQP62_003338"
     tRNA            complement(6451..6527)
                     /locus_tag="OQP62_003338"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6491..6493),aa:Asp,seq:gtc)
     gene            complement(6661..7392)
                     /gene="dnaQ"
                     /locus_tag="OQP62_003339"
     CDS             complement(6661..7392)
                     /gene="dnaQ"
                     /locus_tag="OQP62_003339"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HCS1722797.1"
                     /translation="MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLT
                     GNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASF
                     DIGFMDYEFGLLKRDIPKTNTFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRT
                     LHGALLDAQILAEVYLAMTGGQTSMTFAMEGETQRQQGEATIQRIVRQASRLRVVFAS
                     EEELAAHESRLDLVQKKGGSCLWRA"
     gene            7456..7923
                     /gene="rnhA"
                     /locus_tag="OQP62_003340"
     CDS             7456..7923
                     /gene="rnhA"
                     /locus_tag="OQP62_003340"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HCS1722798.1"
                     /translation="MLKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLTTN
                     NRMELMAAIVALEALKEHCEVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVD
                     LWKRLDAALGQHQIKWVWVKGHAGHPENERCDELARAAAMNPTQEDSGYQAEA"
     gene            complement(7920..8642)
                     /locus_tag="OQP62_003341"
     CDS             complement(7920..8642)
                     /locus_tag="OQP62_003341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HCS1722799.1"
                     /translation="MKPARLSQTVVAPGCWGELPWGNYYREALEQQLNPWFAKMYGFH
                     LLKIGNLSAEINSEACAVSHQVNVSSQGSPMQVLADPLHLPFADKSVDVCLLAHTLPW
                     CTDPHRLLREADRVLIDDGWLVISGFNPLSLMGLRKLVLVLRKTPPYNSRMFTLMRQL
                     DWLSLLNFEVLHYSRFHVLPWKKQGGRLLNTHIPALGCLQLIVARKRTIPLTLNPLRH
                     NKSKTPIRQTVGATRQYRKPDG"
     gene            8677..>9260
                     /gene="gloB"
                     /locus_tag="OQP62_003342"
     CDS             8677..>9260
                     /gene="gloB"
                     /locus_tag="OQP62_003342"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HCS1722800.1"
                     /translation="MNLNSIPAFQDNYIWVLTNDEGRCVIVDPGEAAPVLKAIAAHKW
                     MPEAIFLTHHHYDHVGGVKELLQHFPQMTVYGPAETQDKGATHLVGDGDTIRVLGEKF
                     TLFATPGHTLGHVCYFSHPYLFCGDTLFSGGCGRLFEGTPSQMYQSLMKINSLPDDTL
                     ICSAHEYTLANIKFALSILPHDSFINEYYRKVKE"
BASE COUNT         2092 a         2625 c         2532 g         2011 t
ORIGIN      
        1 atacagtcgc agggtataac ggataacgca cagtatcccg cagggacata catcgtattt
       61 actgccgccg ccccctacat tccgcttttt gagcaacatg ggaaagacga tatcgcgctc
      121 agtcttgttc gccacgaaga ggcgtggtgg attgttaatc actcggatga actgtgctgt
      181 gccgtcaatg agcaggtgat ggaacctcat caccgtatgc ggctgaatga tggagatacg
      241 attgaatggg gtctgtcatc ctggtgcctt gcccgcacca atgatgagtc ccgtcccgat
      301 gtttcgtttc ctcagttggt tcagtcatct gaatccgttg ctgagtacct ggatctggac
      361 tggtttaaac aacaacagct caatccgcag aacccgttcg atattattcc cgtccgggaa
      421 accgcgccct cttacaccgg ccatgaagcg gatagcacgc tacaccagct ttaccaggaa
      481 tatcagcagg ccttgcggcc ctccgggcag gaaaagcccc tccgtcctaa accgtttccc
      541 cgaaatgaag acgctgtcac ccaggatttg acgtcgttat acgataaaaa gggcgatacc
      601 gacacgttac aggatatggt ggcaggcgcg cccggtattg atgccattct ggatacgctg
      661 gacacgaccg gtgagggtga aatgcactgg ctggcgatgg aatcaatgcc cgatatccta
      721 caactgctct cgccggaaat gggggggaaa accgcacata gcgagatact gcccgatctg
      781 acccgccgcg agcatcgtat tattggcatc gatagccact accgaatcac tccgacacag
      841 aaaaatggaa ataccgccca tgaaaaaaac tgacacgctt cctgctaccc tgtccgcgct
      901 gctacaggaa tactctattg cggaggggat tcagatggcg gagcagcagg ttcgggaaaa
      961 tccggcgaag gcgctctgcc gccacagcct gtttcagttg ctgtgtgtgg ccggagactg
     1021 ggcgcgggcg ctacaccagc ttcagctctg tgccaggatg gaggcaaatt atacccagga
     1081 ggcccggctg taccgggagc tggtttgctg cgaaatgttc cgccacaccg tttttcaggg
     1141 tgaacaacga cccggttttc ttctgccgca gcccgtttgg gtggagtcac tgctggcggc
     1201 actcgcctgt catgacgata ccggtgaggt tgataaacac cgtaataccg cactggaagc
     1261 cataacagac acgggcgggc agtggaacgg cggcgcattt gactgggcga gcgacagcga
     1321 ttcccgcctt ggcccggtac ttgagctggt caccggcggc gtgtatatct ggctaccgtt
     1381 ttcgcaaata cgctcgctgg aatcgccgca accgacgcgc ctgaccgatc tgctgtggaa
     1441 acccgttaat atcaccctgg tgaatggcga tacgcacggt gcctggctct ttacccgtta
     1501 cagcggttcg gaaagtgcat ctgacgccct gcgtctgtgc cgggaaaccg cctggcagga
     1561 cggccccggc gaaaccaccg tgcgagcgct ggggcagaaa gtgtggctga ccagccacgg
     1621 cgatatcagc ctgctggaca tgacccattg tacctttcat gctcaggaaa acgatggcgc
     1681 atgagcacgt ctcgttttac acccgctaac cacctgctgc ctacgctgtt tgatcggctg
     1741 tgtgacaatg ctccgtatca gaaaattgac cgggatatca gcgtcacgcc ggtacaactg
     1801 aaggagatca ttcgtcggga tctctccttt ttgctcaata ccattagcca cgagggtgac
     1861 atcgacgccc ggcgctatcc gcaggcggcg gcgtcagtgc tcaactatgg cctgccgccg
     1921 ctggcgggca gctttatgta tgagcacaag tgggacgata tcagcgaggc gatccggcgc
     1981 gccattatcc gtttcgaacc ccggctgaac gccgccacac tcagggtcac gcccttgctc
     2041 gatgaagccc ggcagggtag ctataacacg ctacagtttg aaattcgcgg acaaattctg
     2101 acgcagccgt atcccacgga gtttctggta cgcagcgcgc tggatatgga gctgagccgc
     2161 attacgttct tttaatacag ggcattattc atggatccac ggctactgga gtattacaac
     2221 cgcgaactga gttacctgcg ggagaccggt gctgagttcg ccaccctcca tcccaaaatt
     2281 gccgcccgac tggggatgca gggaaccgat attgccgacc cgtatgtgga acgcatgatc
     2341 gaggcgttca gctttctgag cgcccgcact cagctaaaaa ttgacgccga atttccccgc
     2401 ttcacacagc ggttactgga agtcgtcaac cccaattacg tcacccccac gccatcgatg
     2461 gcagtggtaa agctgtatcc cgatacgcag gaaggcgacc tggcgaaagg ggtcaccgtg
     2521 ccgcgcgata ccgcgttcgt ttcccccatc ccggaaggcg aaaataccgc ctgccagttt
     2581 cgcagcagcc aggacgtcac gctgtggccg ctgtccatcg aggaggtacg cctgaccgcc
     2641 gcgccgccgg atatgcccgc cctgcaccgc tatctgccgc ctaatattca tgtcgccggg
     2701 gcattgcgca tcaccctgcg aaccttcggg gaactggctt tcagcgagct ggccggtccg
     2761 gcacggctgc ccttttacct ctgcggcgaa gaacgcattg cgtcacacct gtttgagctg
     2821 ctacatacca gcgccgtcgc cacactggcc ggagaacccg gtcactttga cggcgaactg
     2881 aatgtgaatc ttcaacaccc ggtggcgcac gaagggctgg agccagggca ggggctgctg
     2941 ccgctcgcct ggaacgtgtt tcatgggcat aatctgctgc atgaattttt cgcctgtccg
     3001 gaacggtttt acttcttcac cccgaccgga ttgtctgccg gtctacaaaa ggtgcagggc
     3061 aatgtggcgg aaattgttat actgcttaac cgcctgccgc cggactggct gattcatcag
     3121 acggacgccg cacagttcag cctgttctgt acgccggtga tcaacctgtt tccccgcacc
     3181 accacccgga ttgaagtcac tcacagcgtg acggaacagc atctggtggt ggatcgtacc
     3241 cgtccgctgg attacgaggt gttttctgtc caggaagtcg aaggcctgga agcggaaacc
     3301 acacggaaga tgatttttcg tccgctgtat cacacccgta ataatgacga aggcaaccac
     3361 gggcgttatt tttcactgcg tcgtgagccg cgccgatcgt cagaaagcgc ccgccgctat
     3421 ggcacccgaa ccccctatac cggctcggaa gtcttcctct cgctggttga tcagcatgaa
     3481 gcgccctacc cggaaaatct gcgccatatc accgtcacgg caatggtgac taaccgcgat
     3541 ctgccctgcc ttattccacg taatggccgg gatgatctga ccgtagatgc ggcgattccg
     3601 gtggcgggcg tgggtcttat cagaccgccg cgcccgccgc agccgccgct ggctgaacgc
     3661 gaaatggcct ggcggctgat ccggcagttg tcgtttaatt atctgccgct ggccgatctg
     3721 gatcaccgca ccggcggcca ggcgctgcgc gatctgctga acctgtttat cccggctcac
     3781 gacagcccgc agtcgcgcca ggtgcgcagc ctgattggct gcaaaaccac cccggtgacc
     3841 cgccgcctac ccggctccgg cctgttggtc tatggccggg gcgtcagttg cgaactgacc
     3901 gtggacgaag aaggattttc cggtatcagt ccttacctgt tcggtctggt gctggaacac
     3961 tatattgccc gccatgtttc cattaatacc ttctcgcaga tgacactgca ctcgatgcaa
     4021 cgcgggcatg tcatgacctg gccggtcaga accgggcaac gggggagcgt atgaccggcg
     4081 ctctcgacca ggcgcagaaa gccccctggc gttacggatt cctgaacctg atgcgacgcg
     4141 tggatgccca gctctgtgat actccggcag gcagtatctg gcagcctcgg atggaaaaat
     4201 tccgtctggg acagacgccg acgatgacct ttgcaccacg ggaaatcgcc caggtcagct
     4261 ggcaggatgg acgcctgcac ctgagcctgt acagcctcgg actatggggg ccaaacggcc
     4321 cgttgccgct gcactatacc gagctggcgc taaatcgctc agagagtcgt cacgatccga
     4381 cgctggttca tttttccaat atttttcact accgctggct gacgcagttc tggcaggcat
     4441 ggcgcagcgg ccagtccgct ggtggcgggc tggacaaacc ggaacacgac cgttttgcgt
     4501 tttatatcgc cagtatcagc gggcaggatc tacgggaaag cgccgaaagc ccgctgtcag
     4561 atcatgttcg cctggcggcc tccgcccatc tggtacgcga gtcgcgcaat cctgacgggc
     4621 tggccgccac gctggcgcac tatttcagcg taccttttgc ggtgaaagag tttgccctgc
     4681 actggataac ggtggcgaac gatgaaatca cccgtctggg cacgcccgcg cagtcttcgg
     4741 tgctgggcaa cggggcgctt atcggccagg ccgtaccgga tatgcagtac aaattccggc
     4801 taattatcgg cccgctcacg ctggaggatt acctgcgttt tctgcccggc ggcaacaatc
     4861 tgcccgtgct gacagaactg gtgcgtacgt tcatcggttt tgaatattgc tgggaaattg
     4921 agctgcagtt gaagccccat gccgcaccgc ctgcggtgat cggcggcgcg cagcggcttg
     4981 gctggacggc ctgggcaggt aaagccatgc atgaccgtcc ggtgaccggc atgatttttg
     5041 aacctgaaca cggcttaacc cactgagagt aatgatatgg acatgtccct gactaaaccg
     5101 gtaagcgcgg aacaaccctg cggccccgat ccggagtacg atccggaata cctgctgctg
     5161 ttcagccgcg ccgcccccca ggcggaggcg caatatggtg attttgtcag tacgccggaa
     5221 gccgtgaact ggccggaaat tgagcgtgat gcgcgccgtc tgctcacgcg cagtaaggat
     5281 atccgggtgt tgatcctgct gctgcgcagt cgcatccagc aggctggcgc acagggactg
     5341 gcggaaatgc tcacacaact ggcagaactg agcgtaatct ggtctgatgc actccatcca
     5401 cagctgctta ccggcgaagg cgcatccgca gaatctattg aagatgcggc gctggcgcgc
     5461 agtaatgccc tggcggcgcg ctggatcacg aaggcgtgat ggcagacatt cgcggtatca
     5521 cgctgtcaaa cagtgccgcc ctgcacctgc aggtacggga cgtggagcgc gcgttatccg
     5581 cccctcgccc ggctgatgcg ctggcccccg aatccgtccg ccagcaactg gcagacctcg
     5641 aagcccgtgg ggcattaccg ctagcggcgt ttcgcgaagc gcaggaaagc gcagaacgcc
     5701 tgcaagtgtg ggcgcgtgag acattaggcg atctggctcc agatttttca cgcctgcggc
     5761 agttgttagc gctgctgcct gacgtggtac agacaaccac gccggaaatc cctccgtcgc
     5821 cagcgccagc gccagctccc gcaggcacgg ttatggataa tgccattcct gcacgggcag
     5881 aggatgtgcc gcctgtcaac gcgccacccg gtatatctat cccacacaat gctgaaccgg
     5941 ggccaattcg cgatcgtaat gatgcgctgg aacgcctgcg gtgcattcgt cgctggtttg
     6001 agagcagtga acccagcagc ccgaccatcc cactattacg tcaggctgaa agactggtgg
     6061 gaaaacggtt ctcggaggtg atcaatgaga tcccggtgga gttgctggag aagtgggatg
     6121 ccctggagtg atgatgcgca tgtctggcgg ttctccgtga ttatctgagt gacatcaaca
     6181 ttactcggtc tgcttctgcg ctgaacatgt cccgatcccg gttaagcacc gccatgaggc
     6241 cgcgccttaa atgtcagtgg gacaaaataa ccatgacagt gaaagaagtg gcggtaatat
     6301 cctgttcgtc atccaggcgt aggcccattt gcgccagatt ccacgataga cggtggaact
     6361 tcttgaagac gaaaaaaaac cgtatccctt ttacagtgat acggtttttt tacttcacag
     6421 gatgtataaa aacaccctga gatttgtatc tggcggaacg gacgggactc gaacccgcgc
     6481 ccccctgcgt gacaggcagg tattctaacc aactgaacta ccgctccgtg atgttcccgc
     6541 tgggaacgag gcgaatatta cggtttgcgg tgtcgcccgt caacgctttt tctcaccttt
     6601 tgaatcagtt gctgcaaaaa tcgcccgaag gatgattttt atagcctaaa aaggaataaa
     6661 ttatgcccgc caaaggcaac ttccgccctt tttctgcacc agatcaagcc gcgattcatg
     6721 cgcagccagc tcttcctcag aggcaaaaac gacccgtaac cggctggcct ggcgaacgat
     6781 tcgctgaatg gtcgcttcac cttgctgccg ttgcgtctct ccttccatcg caaacgtcat
     6841 ggacgtttgt ccgcccgtca tcgccagata cacttcggca aggatctggg catcgagcaa
     6901 tgcgccgtgc aaagtacgtt tgctattatc tatctcataa cgcgaacaca gcgcatcaag
     6961 gctgttacgc ttgccgggga acattttccg cgccaacgcc aggctatcgg taactttgca
     7021 gaaagtattg gttttaggaa tatcgcgttt aagcagacca aactcataat ccataaagcc
     7081 gatatcgaac gatgcgttat ggatgaccag ctccgcgccg cggatataat cgagaaactc
     7141 atcgaccaca tcagcaaaaa ccggcttatc cagcagaaac tcatcggcaa taccgtgtac
     7201 gccaaacgct tccggatcca ccagccgatc cggcttcagg taaacatgaa aattgttgcc
     7261 ggtcagacga cggtttatca cctcaaccgc accgatctca ataatcttgt gaccttcata
     7321 gtgcgcgcct atctggttca taccggtggt ttcggtatcg aggacaatct gtcgtgtaat
     7381 tgcagtgctc atatcggtca tttatgtcag acttgcgttt tgttatcgat ttcaattaca
     7441 ggaagtctac cagagatgct taaacaggta gaaattttca ccgatggctc ttgcctgggg
     7501 aatccagggc ctggtggtta tggcgctatc ttacgctatc gcggtcatga aaaaacgttt
     7561 agtgaaggtt acacgctgac caccaataac cgtatggaac tgatggcggc gatcgtcgcg
     7621 cttgaagcgt taaaagaaca ttgcgaagtg acattgagca ccgacagcca atatgtgcgg
     7681 caaggaatta cccaatggat tcataactgg aagaaacgcg gctggaaaac agcggaaaag
     7741 aaacctgtaa aaaatgtcga tctctggaaa cgtctcgatg ctgcgttagg ccagcatcag
     7801 atcaaatggg tatgggtcaa aggccatgca ggccatcccg aaaacgagcg ttgtgatgaa
     7861 ctggcgcgcg ccgcggcaat gaatcccacg caggaagata gtggctacca ggcagaagct
     7921 tagccatccg gtttgcgata ttgccgggtg gcgccaacgg tctggcggat aggggtttta
     7981 cttttattat gtcgcagcgg attaagcgta agcggaatgg tccgcttacg ggccacaata
     8041 agctgtaaac agcccagcgc cgggatatgc gtatttaaaa gccgccctcc ctgctttttc
     8101 cagggtaaga catgaaaacg gctataatgt agcacttcga aattgagtaa agacagccag
     8161 tccagttgcc gcataagggt aaacatccga ctattatagg gcggtgtttt acgtaaaacg
     8221 agtaccagtt tacgtaaccc catcaaactc agcgggttaa atccactgat gaccagccaa
     8281 ccgtcatcaa tcaatacgcg gtcggcttcc cgcaataaac ggtgcgggtc ggtacaccac
     8341 ggcaaagtat gcgccagcag acaaacatcg acggatttat ccgcaaaagg aagatgtagc
     8401 ggatcggcca gaacctgcat cggcgacccc tgcgatgaaa cattcacttg atgggagacc
     8461 gcgcacgctt cggaattgat ttctgcgctt aaattaccga ttttaagcaa atggaaacca
     8521 tacatttttg caaaccacgg atttagctgc tgttccagcg cctcacggta gtaattgccc
     8581 cagggcaact caccccaaca tccgggcgca acgacagttt gagagagcct tgccggtttc
     8641 atcgcaacct tccgctaatt atttgagagg taatatatga atcttaacag tattcccgcg
     8701 tttcaggaca attacatctg ggtgctgacc aatgatgaag gccgctgtgt gattgttgat
     8761 cccggcgaag cggcccccgt cttaaaggcc attgctgcac ataagtggat gccggaggcg
     8821 atttttctga cgcatcacca ttacgaccat gttggcggag tcaaagagct gttgcaacac
     8881 ttcccgcaaa tgacggttta tggaccggcg gaaacgcaag acaagggagc aacccatctt
     8941 gttggcgatg gcgatactat tcgcgtttta ggcgagaaat ttactctttt tgccacgccg
     9001 ggccacacgt taggacacgt ctgttacttt agccatcctt acttgttctg cggcgacacg
     9061 ctgttctctg gcggctgtgg tagattgttt gaaggcacgc catcacagat gtatcagtca
     9121 cttatgaaaa ttaactctct gcctgacgac acactcattt gcagcgctca cgaatacact
     9181 ttagctaaca ttaagttcgc attgagcata cttccgcacg attcgttcat aaatgaatat
     9241 tatcgtaaag ttaaagagtt
//
LOCUS       DAJVSD010000182         9260 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.182, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000182 DAJVSD010000000
VERSION     DAJVSD010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9260
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.182"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..542
                     /locus_tag="OQP62_003343"
     CDS             <1..542
                     /locus_tag="OQP62_003343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016529756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS1722801.1"
                     /translation="TNDQNTDLQRNALSCAGCERIFEDKISGTKSDRPGLKKLLRTLS
                     AGDTLVVWKLDRLGRSMRHLVTLIEELRQRGVNFRSLTDSIDTSTPMGRFFFHVMGAL
                     AEMERELIVERTRAGLAAARAKGRVGGRRPKLTSEQWAQIGRLLEAGESRQRIALIFD
                     VGVSTIYRKFPANKNNKSP"
     gene            685..1857
                     /locus_tag="OQP62_003344"
     CDS             685..1857
                     /locus_tag="OQP62_003344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HCS1722802.1"
                     /translation="MAQDYHHGVRVVEVNEGTRSITTVSTAIVGMVCTGDDADAKMFP
                     LNKPVLITDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVPQGETEEETTTNIIG
                     AVTAEGKKTGMKALLSAQSQLGVKPRILGVPGHDTKAVATELLSVAQSLRGFAYLSAY
                     GCKTVQEAITYRENFSQREGMLIWPDFTGWDTVLNAEATAYATARALGLRAKIDEQTG
                     WHKSLSNVGVNGVTGISADVFWDLQDPATDAGLLNQNDVTTLVRKDGFRFWGSRCLSD
                     DPLFAFENYTRTAQVLTDTMAEAHMWAVDKPLNPSLARDIIEGIRAKMRSLVSQGYLI
                     GGDCWLDESVNDKDTLKAGKLTIDYDYTPVPPLENLMLRQRITDQYLVNFSSQVSA"
     gene            1867..2382
                     /locus_tag="OQP62_003345"
     CDS             1867..2382
                     /locus_tag="OQP62_003345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HCS1722803.1"
                     /translation="MALPRKLKHLNLFNDGNNWQGIVESLTLPKFTRKYEKYRGGGMP
                     GAVDVDLGLDDGALDTEFSIGGTELLLFKQMGKATVDGIQLRFTGSIQRDDTGEVQAV
                     ELVVRGRHKEVDSGEWKTGESNTTKVTSTNSYAKLTINGEVLYEVDLINMVEIVDGVD
                     LMEAHRNALGL"
     gene            2437..2739
                     /locus_tag="OQP62_003346"
     CDS             2437..2739
                     /locus_tag="OQP62_003346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HCS1722804.1"
                     /translation="MSDKKTEKTIQLDTPIKRGKTEITEIVLRKPQSGALRGTRLQAI
                     MDMDVNAMMTVIPRISSPALTAQEIAEMDPADLTAMSVEVVTFLLKKSVLAGLPTA"
     gene            2754..2873
                     /locus_tag="OQP62_003347"
     CDS             2754..2873
                     /locus_tag="OQP62_003347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HCS1722805.1"
                     /translation="MADIATIFHWPPSVTDVMPLTEVLEWRYKAIQRSGANDE"
     gene            2866..5943
                     /locus_tag="OQP62_003348"
     CDS             2866..5943
                     /locus_tag="OQP62_003348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001282780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1722806.1"
                     /translation="MSDNNLRLQVILNAVDKLTRPFRSAQASSRELAAAVKKSRDAIK
                     QLDQAGSSLDSFRKLQAENQKLGDRLNYARQRANLLSQELGAMGPPSQRQVVALGRQR
                     LAVQRLEERQKKLQQQTALVRAELYRAGISAKDDAGATARLARETSRYNQELSKQEAR
                     LKRLGEAQRRMNVARASYARSLEVRDRIAGAGATTTAAGLAMGTPVMAAVKSYTSMED
                     AMKGVAKQVNGLRDDNGNRTARFYEMQDAIKAASEQLPMENGAVDFAALVEGGARMNV
                     ANPDDSWEDQKRDLLAFASTAAKAATAFELPADELSESLGKIAQLYKIPTRNIEQLGD
                     ALNYLDDNAMSKGADIIDVMQRLGGVADRLDYRKAAALGSTFLTLGAAPEVAASAANA
                     IVRELSIATMQSKSFFEGMNLLKLNPEVIEKQMTKDAMGTIQRVLEKVNALPQDKRLS
                     AMTMLFGKEFGDDAAKLANNLPELQRQLKLTAGNDALGSMQKESDINKDSLSAQWLLV
                     KTGAQNTFSSLGETLRQPLMDILYMVKSVTGASRRWVEANPELTGTLMKVAAVVAAVT
                     VGLGTLAVALAAVLGPLAVIRLGFSVLGIKTLPSVTAAVTRTSSALSWLAGAPLALLR
                     RGLASSGNAAGLLTAPLSSLRRTASLTGNVLKTVAGAPVALLRSGLSGLRAVAVMFMN
                     PLAALRGGLAAAGAVLRVLASGPLAMLRIALYAVSGLLGALLSPIGLVVTALAGVALV
                     VWKYWQPITAFLGGVVEGFKAAAGPISAAFEPLKPVFQWIGDKVQALWGWFTDLLTPV
                     KSTSAELQSAAAMGRRFGEALAEGLNMVMHPLDSLKSGVSWLLEKLGIVSKEAAKAKL
                     PESVTRQQPATVNADGKVMMPSGGFPSWGYGFAGMYDSGGYIPRGQFGIVGENGPEIV
                     NGPANVTSRRNTAALAAVVAGMMGVAAAPAELPPLHPLAFPAKGGEAMVSRAATVSPV
                     QRIEAPTQIIIQTQPGQSVQDIAREVARQLDERERRLKAKARSNYSDQGGYDA"
     gene            5940..6425
                     /locus_tag="OQP62_003349"
     CDS             5940..6425
                     /locus_tag="OQP62_003349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1722807.1"
                     /translation="MMMVLGLYVFMLRTVPYQELLYQRSWRHAANSRVNRRPSTQFLG
                     PDNDMLTLSGVLMPEITGGRLSLLALEQMAEQGKAWPLIEGSGTIYGMYVIEGLNQTK
                     TEFFRDGMPRRIEFTLSLKRVDESLSDMFGDLSAQLNNLQDTVTSALSDISKTVGGLL
                     S"
     gene            6422..7522
                     /locus_tag="OQP62_003350"
     CDS             6422..7522
                     /locus_tag="OQP62_003350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HCS1722808.1"
                     /translation="MNFSSELLNKGNKTPAFSISIEGKDITTVLDNRLMSLTLTDNRG
                     FEADQLDLELDDADGKIVLPRRGAVITLALGWKGQPLFPKGAFTVDEIEHTGAPDRLT
                     IRARSADFRETLNTRREKSWHKTTVGEVVKEIAARHKLKMALGEDLSDKPVEHIDQTN
                     ESDGSFLMRLARQYGAIASVKNGNLLFIRQGQGKSASGKPLPVITITRKDGDSHRFTL
                     ADRGAYTGVIASWLHTREPAKKESTTVKRKRRTKKQKKEPEAKQGDYLVGTDENVLVL
                     NRTYANRSNAERAAKMQWERLQRGVASFSLQLAEGRADLYTEMPVKVSGFKQPIDDAE
                     WTITTLTHTVSPDNGFTTSLELEVRIDDFEME"
     gene            7613..7831
                     /locus_tag="OQP62_003351"
     CDS             7613..7831
                     /locus_tag="OQP62_003351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001504085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ogr/Delta-like zinc finger family protein"
                     /protein_id="HCS1722809.1"
                     /translation="MMICPLCGSAAHTRSSFQVSSLTKERYNQCQNINCSHTFVTHET
                     FVRSIATPKESNPVQPHPMKSGQVALSL"
     gene            7921..9243
                     /locus_tag="OQP62_003352"
                     /pseudo
     CDS             7921..9243
                     /locus_tag="OQP62_003352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462790.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
BASE COUNT         2258 a         2309 c         2737 g         1956 t
ORIGIN      
        1 caacaaatga ccagaacacc gatttgcaac gcaatgcact gagctgtgcg ggatgtgagc
       61 ggatttttga ggataaaatc agtggcacca agtccgacag accggggctg aaaaagctgc
      121 tcaggacact atcggcagga gacacgctgg ttgtctggaa gctggacaga ctggggcgca
      181 gtatgcggca tcttgttacg ctgatagaag agctgcgcca gcgtggcgtg aatttccgaa
      241 gcctgactga cagtattgat accagcaccc caatgggccg tttctttttt catgtcatgg
      301 gtgccctggc tgaaatggaa cgcgaactga tagttgaacg taccagggcg gggctggctg
      361 cagctcgtgc taaaggcaga gtaggtggac gccgtcctaa gttgaccagc gaacagtggg
      421 cacagattgg gcgtttactc gaggccggag aatcaagaca gcgtattgca ctgatttttg
      481 atgtaggcgt ttctaccatt tatcgaaaat ttccggcaaa taagaacaat aaatctccct
      541 gaatcagctt tattttgatt atccctgaaa gcagacaaat accgtcattt tgtgtgaata
      601 acggtacaac tgcgcttagc tgtttgtcag gcacaatcac ttcaacatag ggcgaagcct
      661 aatccaatca ggaggttcgc cactatggct caggattacc accacggggt gcgcgttgtt
      721 gaagtcaacg aaggcacccg atccattacc acggtgagca ccgccatcgt gggtatggtc
      781 tgcacgggcg atgatgccga tgcaaaaatg tttcctctta ataaacccgt gctgatcact
      841 gatgtgctga ctgccagcgg taaagcgggt gagtcaggca cgctggcccg ttcgctggat
      901 gccatcgctg accaggcaaa acccgtgacc gttgttgtgc gtgtgccgca gggtgaaacg
      961 gaagaagaaa ccacgaccaa tatcatcggc gcagtgaccg ctgaaggtaa aaaaacaggc
     1021 atgaaagccc tgttatctgc ccagtcacag cttggcgtta aaccgcgcat tctcggcgtg
     1081 ccaggccacg acaccaaggc ggtagctact gagttgctga gcgtggcgca aagcctgcgt
     1141 ggatttgctt acctgtcagc gtatggctgc aagacggtac aggaggcgat cacttaccgt
     1201 gaaaacttca gccagcgcga agggatgctg atctggcctg actttactgg ctgggacact
     1261 gtgctgaatg ccgaagcaac ggcatatgcc accgcccgtg cgcttggtct gcgcgccaaa
     1321 attgacgagc agaccggatg gcacaaaagc ctgtccaacg tgggcgtgaa cggtgtcacc
     1381 ggaatttctg ctgatgtgtt ctgggatctg caggacccgg caaccgatgc gggactgctg
     1441 aaccagaacg acgtcaccac gcttgtgcgt aaagacggtt tccgcttctg gggttcccgc
     1501 tgcctgagtg atgacccgct ctttgccttc gaaaactaca cccgcacggc gcaggtgctg
     1561 acggacacga tggcagaagc gcacatgtgg gcggtggata aaccgctgaa tccgtcgctg
     1621 gcccgcgaca ttatcgaggg tatccgcgcc aaaatgcgca gcctggtcag tcagggctat
     1681 ctcattggtg gtgattgctg gctggatgag tcggtgaacg acaaagacac gctgaaagcc
     1741 ggaaaactca ccatcgacta cgactacacg ccagtgccgc cacttgaaaa cctgatgctg
     1801 cgtcagcgca tcaccgatca gtacctggtg aatttctcca gccaggtcag cgcgtaaggg
     1861 gacaacatgg ctttaccacg caaattaaaa cacctgaacc tgtttaatga cgggaacaac
     1921 tggcagggga tcgttgagtc gctgacgctg ccgaaattta cccgcaaata tgagaagtat
     1981 cgcggcggcg gaatgccggg tgcagtggat gtggatctgg ggctggatga cggcgcactg
     2041 gatacggaat tttccattgg tggtactgag ctgctgctgt ttaagcagat gggcaaagcc
     2101 acggtggatg gcatccagct gcgctttacc ggctctattc agcgtgatga taccggggaa
     2161 gtgcaggccg tggagcttgt ggtgcgtgga cgtcacaaag aagtggattc cggcgagtgg
     2221 aagacgggcg aaagcaacac caccaaagtg accagtacca acagctacgc gaagctgacc
     2281 atcaatggtg aggtgctcta tgaagtggac ctgatcaaca tggtggaaat tgtggacggt
     2341 gtggacctga tggaagcgca ccgtaacgcc ctcggcctct gatgtatctg aacggcgtgg
     2401 gataccgcgc cagaacccaa tttacaggac agcaaaatga gcgataagaa gactgaaaag
     2461 accattcaac tggatactcc catcaagcgc ggaaaaacgg aaatcaccga aattgtgctg
     2521 cgtaaaccgc agtccggtgc gctgcgcggt acacgcctgc aggccattat ggatatggat
     2581 gtgaacgcga tgatgaccgt gatcccccgc atctccagcc cggcactgac tgcacaggaa
     2641 attgcagaga tggacccggc agatctcact gccatgtcgg ttgaggttgt cacttttttg
     2701 ttgaagaagt cggtgcttgc cggtttaccg acagcctgac ggttgacgat ctggtggcag
     2761 atatcgccac catttttcac tggccgccat ccgttactga cgttatgccg ctgaccgaag
     2821 tgctggaatg gcggtataaa gcgattcaga gaagcggggc caacgatgag tgataacaac
     2881 ctgcgtctgc aggtcattct taatgcggtt gacaagctca cccgcccatt tcgatctgcg
     2941 caggccagtt caagagaact ggctgctgct gtcaaaaaat cccgcgatgc aataaagcag
     3001 cttgatcagg ccgggagcag tctggacagc ttccgaaagc tgcaggcaga aaatcagaaa
     3061 ttaggcgaca ggctgaacta tgcccgccag cgtgcaaatt tgctcagtca ggaactggga
     3121 gcgatggggc cgccttcgca acgtcaggtt gttgctctgg gccgtcaacg gctggctgtt
     3181 cagcgcctgg aagaacgcca gaaaaagctg cagcagcaga cggcgcttgt gcgtgctgaa
     3241 ctgtaccggg cgggaatttc tgcgaaagat gatgcgggag caactgcccg tttagcccgt
     3301 gaaacatcac gttataacca ggaactgtcg aaacaggagg cgcggctgaa gcgactgggg
     3361 gaagctcagc gcaggatgaa tgtggcgcgt gccagttatg cccgttcgct ggaggtgcgc
     3421 gatcgcatcg caggagccgg agccaccacc acggcggcag ggctggcaat ggggacgcca
     3481 gtgatggcgg cagtaaaaag ctataccagc atggaagatg ccatgaaagg tgtggcaaag
     3541 caggtcaatg gtctgcgtga cgataatggc aaccgcactg cacgttttta tgaaatgcag
     3601 gatgccatca aggctgccag cgaacagttg ccgatggaaa acggtgcggt agacttcgct
     3661 gcactggttg aaggtggtgc gcgcatgaac gtcgcaaacc ctgacgacag ctgggaagac
     3721 cagaaacgtg acctgctggc cttcgccagt acggcagcaa aggcggcaac agcctttgag
     3781 ctgccagcgg atgaactgtc agaaagtctg gggaaaatcg cccagctcta caaaatccct
     3841 acccgcaata ttgaacagct cggtgatgcg ctgaactatc tggatgataa cgccatgtcg
     3901 aaaggggcag acattattga tgtcatgcaa cgtctgggcg gtgtggctga ccgtctggat
     3961 tatcgtaaag cggcggcgct gggttccacc tttctgacac tgggcgctgc gccggaggtt
     4021 gcagccagtg cagcaaacgc gatagtgcgt gaattgtcca ttgccaccat gcaaagcaag
     4081 agtttctttg aagggatgaa tctgctgaaa ctcaatcctg aagttattga aaagcagatg
     4141 acgaaggatg cgatgggaac tatccagcgt gtgctggaga aggtgaacgc actgccgcag
     4201 gacaagcgtc tgtctgccat gaccatgttg tttggtaaag agtttggcga tgacgcggcg
     4261 aaactggcaa acaacctgcc ggaactgcag cgccagctaa aactgacagc gggcaatgat
     4321 gcgctcggct ccatgcagaa agaatccgac attaacaagg actcactttc tgcgcagtgg
     4381 ttgctggtca aaaccggagc gcagaacacc ttcagcagcc tgggcgaaac gctgcgccag
     4441 ccgctgatgg atattctgta catggtgaaa agcgtcacgg gagcatcgcg tcgttgggtg
     4501 gaagctaacc cggaactgac gggcacactg atgaaagtag ccgctgtggt ggctgccgtt
     4561 accgtgggcc tcggcacctt agcggtggcg ctggctgcag tgctggggcc gctggcagtc
     4621 atccgtctgg ggttctctgt gctgggtatc aaaacgttac cttccgttac ggcagcagta
     4681 acccgaacta gcagcgcgtt gtcctggctg gctggcgcac cactggcact gctgcgacgc
     4741 gggcttgctt catcgggcaa cgctgcgggt ttacttactg cgccgttgtc gtctttgcgc
     4801 cgcacggcat cactgacggg gaatgtcctg aaaactgtag caggtgcgcc ggttgcactt
     4861 ttgcggtctg gattatccgg tttacgtgct gttgctgtga tgtttatgaa tccactggca
     4921 gcactacgcg gtgggctggc tgccgcaggc gcggtgctgc gtgtgctcgc atccggcccg
     4981 ctggcgatgt tgcgcattgc cctgtatgcc gtatctggtc tgttaggtgc tctgctcagt
     5041 ccgataggtc ttgtggttac tgcactggcg ggcgtggcgc tggttgtctg gaaatactgg
     5101 caacccatca ccgcatttct cggtggcgtg gtggaaggat tcaaagcggc ggcaggtccc
     5161 atcagtgcag cattcgaacc acttaagcct gtgtttcagt ggattggcga caaagtgcag
     5221 gcgttgtggg gctggtttac tgatctgctg acgcccgtta agtcgacctc tgccgaactg
     5281 cagagcgcag cggcaatggg gcgacgattc ggggaggcac tggcggaagg gctgaatatg
     5341 gtcatgcatc cgctggactc cctgaaatcc ggcgtttcct ggttgctgga gaaactcggt
     5401 attgtcagta aagaggctgc aaaggcgaaa ctgccggaaa gcgtgacgcg tcagcaacct
     5461 gcgacggtga atgcagacgg taaagtgatg atgccatcag gtggtttccc atcatgggga
     5521 tatggttttg cggggatgta tgacagcggt gggtatatcc cgcgcgggca gtttggcatt
     5581 gtcggtgaaa acgggcctga aattgtcaac ggcccggcaa acgtgaccag ccggagaaat
     5641 acagctgcac tggctgccgt tgttgccgga atgatgggtg ttgctgccgc gccagcagag
     5701 cttccaccgt tgcacccttt ggcatttccc gcgaaaggcg gtgaagcgat ggtgagtcgc
     5761 gcagccactg tgtcgcccgt tcaacggatt gaggcaccga cgcagatcat cattcagacg
     5821 cagccaggac aaagtgtgca ggatattgcg cgggaggtgg cccgccagct tgatgaacgt
     5881 gaacgcaggc tgaaggcaaa agccaggagt aactacagcg atcagggggg atacgacgca
     5941 tgatgatggt gctgggattg tacgtgttta tgctgcgcac tgtgccgtat caggaactgc
     6001 tgtatcaacg cagctggcga catgcggcaa acagccgggt caaccgacgt ccatccacgc
     6061 agtttctggg accggacaac gacatgctga cgctttctgg tgttcttatg ccggagataa
     6121 cgggcggcag actgtcgttg ctggctctgg agcagatggc agaacaggga aaagcatggc
     6181 ccctgattga aggcagcggc acgatttacg gcatgtatgt gattgaggga ctgaatcaga
     6241 ctaaaacgga gtttttccgc gatggtatgc cgcgccggat tgagttcacc ctgtcgctca
     6301 aacgggtgga tgaatccctg tccgatatgt tcggtgatct cagtgcgcag ctgaataatt
     6361 tgcaggatac ggtaacgtct gccttaagcg atatcagtaa aacggtggga gggctgctgt
     6421 cgtgaatttc agctctgaac tgcttaacaa aggcaacaaa actcccgcat tcagcatcag
     6481 tattgagggg aaggatatca ccactgtgct ggataaccgc ctgatgagtc tgacgctgac
     6541 ggacaatcgg ggctttgaag cagaccagct tgatttggag ctggacgacg ccgacggaaa
     6601 aatcgtgctg ccgcgccgtg gggctgtcat tacgctggcg ttgggctgga aggggcagcc
     6661 gcttttcccg aaaggagcat tcacggtgga cgagattgaa cacactggcg caccggaccg
     6721 cctgactatc cgggcgcgaa gtgctgattt tcgtgaaacc ctgaataccc gccgtgaaaa
     6781 atcgtggcac aagaccaccg ttggggaagt ggtgaaggaa atagctgcgc ggcacaaact
     6841 gaagatggca ttgggtgaag acctgtcgga taaacccgtg gagcatatag accagaccaa
     6901 tgagagtgac ggcagttttc tgatgcggct ggcgcgccag tacggtgcta ttgcgtcggt
     6961 gaaaaatggc aatctgttat tcatccggca gggacagggt aaaagcgcca gcggtaaacc
     7021 actgccggtg atcactatca cacggaagga cggcgacagt caccgcttta ccctggcaga
     7081 tcgcggagcc tacacgggcg taattgccag ctggttgcat acccgcgaac ccgcgaagaa
     7141 agaaagcacc acggtgaagc gtaagcgcag gactaagaag cagaagaaag agccggaagc
     7201 gaagcagggc gattacctgg tggggacgga tgaaaacgtg ctggtactta atcgcactta
     7261 tgccaaccgg agcaacgccg aacgagcggc gaaaatgcag tgggaacgct tgcaacgcgg
     7321 cgttgcgtca ttctcgctac aactggcgga aggtcgggca gatctctaca cggaaatgcc
     7381 tgtgaaggtc agtggcttta aacagccgat agatgatgcg gaatggacca ttaccaccct
     7441 gacacatact gtcagcccgg ataatggttt tacgaccagt ctggagcttg aagtgaggat
     7501 tgatgatttc gaaatggaat gattcttcgc aatggagaac ttttaagttt gcaaaatgga
     7561 ataatgcggt atcattattg tgaatttagc aaaaatgggg agagctcgaa aaatgatgat
     7621 ttgcccactg tgtggaagtg ccgcccatac tcgcagcagt tttcaggtat cttcattgac
     7681 caaagagcgt tacaaccagt gccagaacat taactgcagc catacttttg ttacccatga
     7741 aacttttgtt cgttcgattg caacgccaaa agagtcaaat ccggttcagc cgcatccaat
     7801 gaaatcagga caggtggcgc tctctctttg acgctgccgc cattttgtcg ccatcgttaa
     7861 aaaacagtgt ttctaacatc atgattttaa acagcttaaa tttcaggcaa caaaaaaccc
     7921 attaaccttg ctccagccga tctaccgaaa gagggcggaa ggtatgacct gcctattgct
     7981 gttgcgcttc tggccgcgtc tgagcagctt acagcgtcga atcttgaggc atatgagctg
     8041 gtgggtgagt tagcgcttac aggcgcatta cgcggcgttc ctggcgcaat atcaagtgca
     8101 acggaagcca tcagggccgg cagaaatatt atcgtcgcaa cagagaacac ggcggaggtt
     8161 gggcttatca gcaaagaagg atgttttatc gccgatcatc tacaaaccgt ctgcgccttt
     8221 ctggaaggga aacacgccct ggaaagacct ttagctcagg atatggcatc gtctaccgca
     8281 actgccgatc ttcgcgatgt gatcggtcag gagcagggta aacgcggcct ggagattaca
     8341 gcggcagggg gacataatct gctattgatc ggcccgccgg gtacgggtaa aaccatgctg
     8401 gccagtcgac tgagcgggat tcttccacca ttaagcaatg aagaggcgtt ggaaagcgcc
     8461 gcgatcctca gtctggttaa tgccgatacg gtacaaaaac gatggcagca acgtcccttt
     8521 cgctcacctc atcatagcac ctcacttact gctatggtcg gcggcggcgc aatacccgcc
     8581 ccgggagaga tatcgctggc gcacaacgga attttgttcc ttgatgaatt gcctgaattt
     8641 gaacgacgca cactggatgc gctacgtgaa cctatagaat ccggtcaaat tcatttatcc
     8701 cgtaccagag cgaaaataac gtaccctgcc aggttccagt taatcgccgc aatgaatccc
     8761 agcccgaccg gacattatca gggaaaccat aatcgctgca cgccagaaca gacactacgt
     8821 taccttaatc ggttgtcagg cccgtttctt gatcgttttg acctttcgct tgagataccg
     8881 cttcctccgc ccgggattct tagccaacac gcctcaaagg gtgagagcag cgctacggta
     8941 aaaaagcggg tcatcgccgc ccataaacgg cagtaccgac gccagaagaa gttaaacgcg
     9001 cgtctggagg gtcgcgaaat ccaaaaatat tgtgttttac atcacgatga cgcccgctgg
     9061 cttgaagaca cgctggtgca tcttggatta tccattcgcg cctggcagcg tttactaaaa
     9121 gttgccagaa ccattgccga catagaactg gctgaccaga tctcgcgtca gcatttgcag
     9181 gaggcggtaa gctatcgggc gatagacagg ttgttaattc atttgcaaaa gctgttggcg
     9241 taaaaaaagg gcattacgcc
//
LOCUS       DAJVSD010000183         9191 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.183, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000183 DAJVSD010000000
VERSION     DAJVSD010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9191
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.183"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            1..191
                     /locus_tag="OQP62_003353"
                     /pseudo
     CDS             1..191
                     /locus_tag="OQP62_003353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_490545.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
     gene            complement(307..1332)
                     /locus_tag="OQP62_003354"
     CDS             complement(307..1332)
                     /locus_tag="OQP62_003354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS1722810.1"
                     /translation="MSIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMD
                     EVNKKPWLGEKEDRRHLSEVIEQWHSLYGQTLADPKRLLAKLSIICNGLGDPIASELT
                     AGDFTKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWPAPNPL
                     AGLPTFKIAEGELAFLAPEEIKRLLDACADSQSPSLLMIAKICLATGARWSEAENLQG
                     HQLSKYRITYTKTKGKKNRTVPISQELYDELPKNRGKLFTPCRKSFERAVKRAGIELP
                     EGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPDHLEDAVTKNPL
                     HNLNWKR"
     gene            complement(1336..1968)
                     /locus_tag="OQP62_003355"
     CDS             complement(1336..1968)
                     /locus_tag="OQP62_003355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1722811.1"
                     /translation="MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMAN
                     RYLRDSFPAEWVIQCALETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIV
                     APSIKHVELKNGELQPSDEILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFW
                     LVDMDGVKSIVKIARVPGNKIVVHQDETSFECSVDDIEAIGRAVKVIKSL"
     gene            2085..2327
                     /locus_tag="OQP62_003356"
     CDS             2085..2327
                     /locus_tag="OQP62_003356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006817401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HCS1722812.1"
                     /translation="MSTDISIRVPKEMATPAEFAEWEGISRGSVYQKIHHGQLAKYMV
                     KKEKNKGRVSLRYLMYKTDQVRESLGHSNFRVIVGQ"
     gene            2360..2869
                     /locus_tag="OQP62_003357"
     CDS             2360..2869
                     /locus_tag="OQP62_003357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage regulatory CII family protein"
                     /protein_id="HCS1722813.1"
                     /translation="MFDYKISKHPHFDEACRAFALRHNMAKLAERAGMKVQTLRNKLN
                     PEQPHQLTPSEIWLLTDITEDSTLVDGFLAQIHCLPCIPMNEVAKEKLPHYVMSATAE
                     IGRVAAGAVSGDVKTTAGRRDVISSINSVTRLMALAAVSMQARLQANPAMASAVDTVT
                     GLGASFGLI"
     gene            2877..3077
                     /locus_tag="OQP62_003358"
     CDS             2877..3077
                     /locus_tag="OQP62_003358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2724 domain-containing protein"
                     /protein_id="HCS1722814.1"
                     /translation="MLTKEPSFASLLVKQSPAMHCGHGWIMGKDGKRWHPCRSQDALL
                     AELSAKKQGKPWLLKVMLRLFR"
     gene            3041..3382
                     /locus_tag="OQP62_003359"
     CDS             3041..3382
                     /locus_tag="OQP62_003359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5347 domain-containing protein"
                     /protein_id="HCS1722815.1"
                     /translation="MAIEGDAATVPLSAGLRLNGLNHIAELRAKVFGLNIDSELDRFI
                     SDMRDQRDINHEQNKRALAAIFFMAKIPAERHSVNVSELTTDEKRELIKAMNHFRTVV
                     SLFPNRLAMPN"
     gene            3450..3683
                     /locus_tag="OQP62_003360"
     CDS             3450..3683
                     /locus_tag="OQP62_003360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2732 domain-containing protein"
                     /protein_id="HCS1722816.1"
                     /translation="MRNIETRITKTGPDDAGLNQMLTDARMEERRGRADVMAARLDSL
                     AARIVSRQLNHTEAAELLRQEAVKIQNEAQEIH"
     gene            3683..3910
                     /locus_tag="OQP62_003361"
     CDS             3683..3910
                     /locus_tag="OQP62_003361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HCS1722817.1"
                     /translation="MADSMDLVQQRVEEERQRHIHTARNKTPGVSRVLCIDCDAPIPP
                     ARRRAIPGVQCCVTCQEIAELKGKHYNGGAV"
     gene            3907..4491
                     /locus_tag="OQP62_003362"
     CDS             3907..4491
                     /locus_tag="OQP62_003362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001090717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HCS1722818.1"
                     /translation="MNTDKMTISQRANQWLDNDYLFIDTETTGLGDDAEIVEICIIDS
                     HGFIMLNTLIKPTKPIPDEAIAIHGITNEMVAFAPAWTDICGAVEELFRRFGFVIYNA
                     DFDLRLIRQTYALNERPSEGAPWMLAAHSVCAMKLYAEYRGEPGRFNGYKWHKLVDAA
                     AHEGVVVEGKAHRALADCKMTLGLVRALAKGGAK"
     gene            4488..5348
                     /locus_tag="OQP62_003363"
     CDS             4488..5348
                     /locus_tag="OQP62_003363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HCS1722819.1"
                     /translation="MSTILKWAGNKTAIMPELIKHLPAGQRLVEPFAGSCAVMMATDY
                     PHYLVADINPDLINLYKKIALDCEAFISRAKNIFAIANREVAYYNIRHEFNHSSEITD
                     FMKAVYFLYLNRHGYRGLCRYNLSGHFNVPYGNYKNPYFPENEIRAFAKKAQRATFIC
                     ASYDETLAMLRAGDVVYCDPPYDGTFSGYHTASFTGDDQYHLASILERRSSEGHPIIV
                     SNSDTSLTRSLYRNFTRHRIIAKRSMGVAAGDGKSATEIIATKLVRWFGVDLASGPDV
                     SVETEVRAWQ"
     gene            5339..7808
                     /locus_tag="OQP62_003364"
                     /pseudo
     CDS             5339..7808
                     /locus_tag="OQP62_003364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749758.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="replication endonuclease"
     gene            7976..8164
                     /locus_tag="OQP62_003365"
     CDS             7976..8164
                     /locus_tag="OQP62_003365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722820.1"
                     /translation="MQDYILESLKLQRIDFFIKLVAASECSDEEKRLAIQWVSELTDE
                     LMAKIRSHEYCRSMDVTS"
     gene            8176..8409
                     /locus_tag="OQP62_003366"
     CDS             8176..8409
                     /locus_tag="OQP62_003366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI family protein"
                     /protein_id="HCS1722821.1"
                     /translation="MRIEIMIDKEQKISQATLDALESELYRNLRPLYPKTAIRIRKGS
                     ANGVELSGLKLDEDKKRVMEIMQQVWEDDSWLH"
     gene            8505..8723
                     /locus_tag="OQP62_003367"
     CDS             8505..8723
                     /locus_tag="OQP62_003367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000835187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722822.1"
                     /translation="MKSHDRLRIVFAQARQNWRAFAYVMQVHENHYTKRAGVAGIRAR
                     AQRLTLGPKSLQAKKLTFIFQLELSAKK"
     gene            8733..>9191
                     /locus_tag="OQP62_003368"
     CDS             8733..>9191
                     /locus_tag="OQP62_003368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000829584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722823.1"
                     /translation="MAENGPIEDLAKRISEDLLSRFKWQQHGPCDRDFLCDDEAKHKP
                     EGKKQKHTHPVDVVFSYKDPYLNKVIYLNTDLKSYKAGSINASKIESALASLAKTIEC
                     ARYSPEWSEKYNFSQIDCEVRGLLFVFNHDNQLQHDFYEFFNPPKPAKGRR"
BASE COUNT         2336 a         2168 c         2386 g         2301 t
ORIGIN      
        1 ctttctttgt tcgggccatt ggtgattcga tgcgggatat ggggctgcat tccggtgatc
       61 taatggtggt cgataaagcc gaaaagccgc tacagggtga catcgtcatt gcagaaacag
      121 aaggtgagtt tacagtcaaa cgtctgcaac ttaagccccg catcgccctg cttcccatga
      181 atcctgcata ccatttttag tatagttaaa acagtgtttt atgtttaaaa acagcgagtt
      241 agtattatta agtatttgtc cgttttacgc gtttttaatg ccctgccgcc aaaatgccgc
      301 cataaattag cgcttccaat tgaggttgtg aagcgggttt tttgtcacgg catcttcgag
      361 gtggtcaggg gcaaagtgag cgtaaaccat cgtcattttt atatcggcat ggcccagaat
      421 atcgcgcagt accagtatgt ttccgccgtt catcataaaa tggctggcga atgtatggcg
      481 cagtacgtga gtgcactggc cttctggcag ttcgatacca gctcgcttta ctgcacgctc
      541 aaaggatttt ctgcatggcg tgaataactt ccccctgttt ttagggagtt catcatacag
      601 ttcctgagat attggcacgg ttcggttttt cttgcctttg gtcttggtat aagtgatgcg
      661 gtattttgat agctgatggc cctgcaggtt ttcggcttca ctccatcggg cgccagttgc
      721 caggcatatt tttgcaatca tcagcaaact gggactctgc gaatcagcac aggcatccag
      781 tagacgttta atttcttccg gtgccaggaa cgccagttcg ccctctgcga ttttgaatgt
      841 tggcagccca gcgagcgggt tgggtgctgg ccagtggccc agctttttca gtgtgccaaa
      901 aacagatgat aggttacgtt gttcaaggtt taccgtacgg ggcttaactg gcgacataag
      961 cacgccatct tcatttttta cttcaccttt taaccgtgct tcccggtatt tcgtaaaatc
     1021 gcctgcggtt aactctgagg caatgggatc gcccaaacca ttacaaataa tgctgagttt
     1081 tgccaacagg cgtttggggt ctgccagcgt ctgcccataa agtgaatgcc actgctcaat
     1141 cacttctgac aaatgccgcc gatcttcttt ctcccccagc cacggttttt tgttcacctc
     1201 atccatggtg tggttttcga atgctatggc ctcgccttta gtcgcaaatt gcttgcgtac
     1261 acgcttgcca tcccgtccgt tcgggtagca ttcacacaac cattttccgt taggctgttt
     1321 tctgatgctc ataagttaga ggctcttgat tactttgact gcacgcccga tagcttcaat
     1381 gtcgtcgacc gagcattcaa atgatgtttc atcttggtga actacaattt tgttgcctgg
     1441 aacgcgagcg attttgacga tgcttttaac tccgtccata tcgactaacc agaagccatt
     1501 actgacttgt ttaacagacg tatccacaac aaagctatca gtagctgttt ttacaaacaa
     1561 agagttggat gagtcaccat cgagcagtct gctatcaaga agaatttcat cacttggctg
     1621 cagttcaccg ttcttcagtt caacatgttt gatgctagga gcaacaattt tagaaagtgg
     1681 tcttaccgtg acggaggttt cgtttttgag atttctttct tcgttctcac acgcatacat
     1741 atctccttgg cccgtagcca gccatagaag ggaaattcct gtttcaagag cgcattgaat
     1801 tacccattca gcagggaaac tatcccttaa gtatctgtta gccatagtgc tttttgatac
     1861 ttccagatgt tcgcagagct gctgtcgtga gctgaaattg taagccttaa taagcctgtt
     1921 aatcgcatcg cgcccaccac tatcattccc tgccttgatt aaactcataa tcaaacctct
     1981 tgacgtatat aaaaagtgat cttaatatcc gctcatggtt tgaaaagtaa aatcaaacca
     2041 cataaaacaa gataaaacga acccaaacta agagatactg cactatgagt actgatattt
     2101 caattcgtgt accaaaagag atggcaacgc ctgctgagtt cgcggagtgg gaaggtatct
     2161 cccgtggctc ggtgtatcaa aaaattcacc atggtcagct tgctaagtac atggtgaaga
     2221 aagaaaaaaa taaaggacgt gtaagcctgc ggtacctgat gtacaaaacc gaccaggttc
     2281 gtgagtctct gggtcattcc aacttccgcg tcattgttgg tcagtaagtt cgattatgag
     2341 aactttctaa ggggcttgca tgtttgatta taagatttcc aaacatccac actttgacga
     2401 agcctgccgg gctttcgcgc tgcgtcacaa catggcgaag ctggcagaac gcgcgggaat
     2461 gaaagtccag acgctgcgta acaagctgaa cccggaacaa ccgcatcagc tcacgccgtc
     2521 ggagatctgg ctgcttaccg atattactga ggactccacg ctggtagatg gtttcctggc
     2581 acagattcac tgcctgccat gcataccgat gaacgaagtg gcaaaagaga agctgccgca
     2641 ttacgtcatg agcgctactg ctgaaatcgg acgtgttgct gccggtgctg tatcgggtga
     2701 tgtgaaaact actgcaggcc gccgcgatgt tatcagtagc atcaactcag ttactcgtct
     2761 aatggcactg gctgccgttt ccatgcaggc acgtttgcag gctaacccgg cgatggcaag
     2821 cgcggtggat accgtgacgg gcctcggcgc ttcattcggt ctgatctgag gtggctatgc
     2881 tgactaaaga accatctttt gcatcacttc tcgttaagca aagtcctgca atgcactgcg
     2941 gtcatggctg gattatgggg aaggatggca agcgctggca tccgtgccgc tctcaggatg
     3001 cgttgctggc tgagctgtcc gctaaaaagc aggggaaacc atggctattg aaggtgatgc
     3061 tgcgactgtt ccgctaagcg ctggcctccg tcttaatggg ttaaaccaca tcgcggaatt
     3121 aagggcgaaa gtgtttggct taaatattga ttcagaactg gatcgcttta ttagcgatat
     3181 gcgggaccaa cgggatatta accatgagca gaataaacgc gcactagccg caatattctt
     3241 tatggcaaag attccggcgg aacgtcatag cgtcaatgtt agtgaactga cgactgacga
     3301 aaagcgggag ctgattaaag caatgaacca tttccgtaca gtggtgagtt tatttccaaa
     3361 tcggctagcc atgccgaatt aaccaacaac cgaaattaaa ggcgtaaacc cgccgggctt
     3421 cttattgccc aaattcagga gaaacaacaa tgcgaaatat tgaaacccga atcaccaaaa
     3481 caggaccaga tgatgctggc cttaaccaga tgctgactga tgcacgcatg gaagaacgcc
     3541 gtggacgcgc tgatgtgatg gcagcacgtc tggactcttt ggctgcccgt atcgtgtcac
     3601 gtcagcttaa ccacacggaa gcggctgagc tgctgcgtca ggaagcggtg aagattcaga
     3661 acgaagcgca ggagatccac tgatggctga ttcaatggac ctcgtacagc agcgcgttga
     3721 agaagaacgc cagcgccaca ttcacaccgc ccgcaataaa acgccgggcg tttcccgtgt
     3781 tctctgcatt gattgcgatg caccgatccc gccagcacgc cgccgcgcca ttccgggcgt
     3841 gcagtgctgc gtcacctgtc aggaaatcgc agagctgaaa ggcaaacact acaatggagg
     3901 tgctgtatga ataccgataa gatgacaatt agccaacgtg caaatcaatg gcttgataat
     3961 gactacttat ttattgatac cgaaacgacc gggttgggtg atgatgcgga aatagttgaa
     4021 atatgcatta ttgatagtca tgggtttatt atgcttaata cgcttattaa gcccactaag
     4081 cctatccctg atgaagcaat agcaattcat ggaattacta atgaaatggt tgcttttgcc
     4141 cctgcctgga ctgatatatg cggggcagtg gaggaactat ttcggcgctt tgggtttgtt
     4201 atctataacg ccgattttga tctccggtta attcgtcaga cctacgcatt gaatgaaaga
     4261 ccttctgaag gtgcgccatg gatgcttgct gctcattctg tttgcgcgat gaagctttat
     4321 gcagagtatc gaggcgagcc gggacgattt aatggctata aatggcataa gctggttgat
     4381 gctgctgcgc atgaaggtgt tgtagttgaa ggtaaggcgc accgtgcttt agctgattgc
     4441 aaaatgacgt tagggcttgt ccgtgctctg gctaaaggtg gtgctaaatg agcaccatcc
     4501 tgaaatgggc gggaaataaa accgccatca tgccggaact gattaagcat ctgcctgcag
     4561 gtcagcgact ggtggagccg ttcgccggtt cctgtgctgt gatgatggca acagactatc
     4621 ctcattatct tgtcgcggat attaatccag atcttatcaa tctctataaa aaaattgccc
     4681 ttgattgtga agctttcata tcacgcgcaa agaatatttt tgcgattgcg aatagagaag
     4741 ttgcttatta caacattagg catgaattta atcattcctc tgaaattact gatttcatga
     4801 aagcagtata tttcctttat ctcaatcgtc atggttatcg tggactgtgc cgctataacc
     4861 tgagcggtca ttttaatgtc ccttacggta attataaaaa tccgtacttc cctgaaaacg
     4921 aaatacgtgc ttttgcaaaa aaggcacaac gcgcaacgtt tatctgcgcc agctatgatg
     4981 agacgctggc aatgctgcgg gcgggggatg tggtttattg tgatccgcca tatgacggca
     5041 catttagcgg ttatcacact gccagtttta ccggggacga tcagtaccat ctggcgtcta
     5101 ttcttgaacg ccggtcatca gaaggtcatc cgattattgt gtccaacagc gacacctctc
     5161 tgacacgttc cttatatcgt aatttcaccc gccaccgcat catcgcaaag cgcagcatgg
     5221 gtgtggctgc aggtgatggt aaatctgcaa cagaaatcat cgctacgaag ttagtgcgct
     5281 ggttcggtgt tgatttggcg tctggtcctg atgtctcggt ggaaactgag gtgcgggcgt
     5341 ggcagtgagt aaaatcacat tacattatgc acaaaccacc ggcggctcga atgaggccgc
     5401 cgcagccttt ccatggaata ccccaaaaaa agcggttaac ccgtatctgg acccggcgga
     5461 atttgcgccg gagtctgcgc tttcaaacct gatcgctctt tacgctgtgg ataacgagca
     5521 ggagcagttg cgccgtgaga cgctgagcga tgaggtctgg gagcgctatt tcttcaatga
     5581 atcccgtgat cctgtccagc gtgaaatgga gcaggatcgg ctgattaacc atgccaaaac
     5641 ggcgcgcgag cagcagcgtt ttaatcccga tctggtcatt attgccaacg tgggcgccca
     5701 accggcgcat atcagcaagc ctctgctgga gcggattaaa tatttccata gtctgggcag
     5761 agcaaaagct tattcccgct acctgcaaaa aacaatcagg ccgtgtcttg agcggctgga
     5821 gcgcgtgcgc gacagtcagg tatctgcctc tttccggttc atggcgagtc atgacgggct
     5881 ggaggggctg ctggtactcc ctgaaatgaa tcaggatcag gttaaacgcc tatccacgct
     5941 ggttgcggca catatgagca tgtgtcttga tgcagcctgc ggtgatctgt ttgtcagtga
     6001 tgatgttaaa ccagaagaaa ttcgtcaggc atgggaaagg gttgctgcag aggccatgcg
     6061 ccttgaggtc atcccgcctg cgtttgagca gttgcgccgc aaaaagcgcc gccgtaagcc
     6121 ggtgccttat gaactgatcc caccgtcgct ggcccgtatg ctgtgcgcgg actggtggta
     6181 tcgcaaattg tggcagatgc gctgcgagtg gcgggaggag cagttgcgcg ccgtctgcct
     6241 ggtcaacaag aaagcctcac cgtatgtcag ctacgaagcc gtgatccaca aacgcgagca
     6301 gcgccgcaaa tcgctggagt tcttccgctc gcatgagctg atcaacgaag acggcgacac
     6361 gctggacatg gaagacgtgg tgaacgccag caacagcaac ccggcgcacc gccgtaatga
     6421 aatgatggcc tgtgttaagg ggctggagct gatcgcggaa atgcgcggag actgcgcggt
     6481 gttttatacc atcacctgcc cgtcacgctt ccacgcaacc ctcaacaacg gcaggcctaa
     6541 tccgaagtgg accagtgcca ctgtccggca gagcagtgac tatctggttg atacgttcgc
     6601 cgctttccgc aaggcaatgc acaaggccgg gctgcgctgg tatggcgtcc gcgttgcaga
     6661 gccgcaccat gacggcaccg tgcactggca tcttctgtgc ttcatgcgca aaaaagaccg
     6721 ccgttccatc accgcgctgt tgcgtaagtt tgccatccgt gaagaccgcg aggagctggg
     6781 cgccaatacc gggccgcgct tcaagcccga gctaatcaac ccgcgcaagg gtacgccgac
     6841 aagctacatc gccaaataca tcagcaagaa catcgacggg cgcgggctgg ctaaagaaat
     6901 cagcaaagaa accggcagat cactgcgtga cagcgccgag catgtcagcg cctgggcgtc
     6961 actgcatcgt gtccagcagt tccgtttctt tggtattccg gggcgtcagg cataccgcga
     7021 gctgcgcttg ctggctggtc aggcggcgag agtgcagggc gaacgcaaag cgggtgcgcc
     7081 ggtactggat aatccgcgtc tggatgcggt actggcggcg gctgatgcgg gctgctttgc
     7141 cacctatatc atgaagcagg gcggtgtgct ggttccccgc aaacatcacc ttgtccgcac
     7201 ggcatatgag cttaacgatg agccgagcgc ctacggcgat cacggtatcc gtatatatgg
     7261 catctggtcc ccgattgcgg agggcaagat ttgcacgcac gcggtgaagt ggaaaaaggt
     7321 tcgtaaagcc gttgacgttc aggaggcggc agccgaccag ggcgcttgcg ccccttggac
     7381 tcggtaaagc cgttgacgtt caggaggcgg cagccgacca gggcgcttgc gccccttgga
     7441 ctcggactcg tggcaataac tgtccccctg ttgaaaatct gaacaaatca gggggtgatt
     7501 tacccgatat taaaaccatg aatgagaagg aactgcagga ttatctccac aatatgggcc
     7561 agaaggaacg gcgggaactt acagccaggt tgagactggt aaaaccgaag cggaaaacag
     7621 tatacaaaca gaatatttcg gagcagcaac gcctgcagct tgaggcagaa ctgacagcca
     7681 gagggtttga aggtagtgca tctgagattg atttgcttct gcgtggtggc agcattccgt
     7741 caggtgccgg gctacggatt ttttaccgca accatcgact gcaggaagat gacaaatggc
     7801 gtcagtgata ctgacggcaa ggctttaaca attcatgctc ttaacgacct tcgtaagaac
     7861 gttctcattg acggataaaa aatattttac ttttggatat caggggtaca ctgtatatat
     7921 aaacagtgga tatacataca gttaatgcgt atccgaggtc gtgataggag ggaagatgca
     7981 ggactatatt ttggagtcgt tgaagctcca gcgcattgat ttttttatta agcttgtagc
     8041 ggctagtgag tgcagcgacg aagaaaagcg gctggctatc cagtgggtgt cagaactgac
     8101 cgacgagctg atggcgaaaa tccgcagcca tgaatactgc cggtcaatgg acgtaaccag
     8161 ttaagggaaa tctgtatgcg cattgaaata atgatcgata aagagcagaa gattagccag
     8221 gctacactgg acgcccttga atccgagctt taccgtaatt tgcgccctct gtatcccaaa
     8281 acagcaattc gtatccgcaa gggcagcgcc aatggtgttg aactgagcgg gttaaaactg
     8341 gatgaagaca aaaagcgagt gatggaaata atgcagcagg tctgggagga cgacagctgg
     8401 ttacattagc gaacgttgcg gacgataaaa ctggttttta ccgtccgcaa ggttgaacaa
     8461 cgagccacgt gaggcgttag cgctgttgtg catgtctatg ccgcatgaaa tcgcatgatc
     8521 gtttgaggat cgtttttgct caggcccgcc agaactggcg ggcttttgct tatgtcatgc
     8581 aggtgcatga aaaccactac acaaagcggg caggcgtggc ggggatacga gcgcgcgctc
     8641 agcgtctcac gttaggtcca aagtccttgc aagcaaaaaa gcttaccttt atctttcaat
     8701 tagaattgtc tgcaaaaaag taaggaaatc aaatggcaga gaacggccct attgaagatt
     8761 tggcgaaacg catatcggag gatctactga gtcgatttaa gtggcagcag catggcccct
     8821 gcgaccgaga tttcctttgt gatgatgagg ctaaacataa gcctgaaggt aagaagcaga
     8881 agcacacgca tcctgtagat gttgtattta gttataaaga cccatattta aacaaagtta
     8941 tttatttaaa tactgattta aaaagttata aagcaggttc aataaatgcg tcaaaaatag
     9001 aatctgcatt ggcgtcatta gcaaaaacta ttgaatgtgc tcgctatagt cctgagtggt
     9061 cagaaaaata taatttttct caaattgact gtgaagttcg cggtttactg tttgttttta
     9121 atcatgataa tcagttgcag catgattttt atgagttttt taatcctccc aaacccgcta
     9181 aaggaagaag a
//
LOCUS       DAJVSD010000184         9171 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.184, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000184 DAJVSD010000000
VERSION     DAJVSD010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9171
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.184"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            403..1302
                     /gene="yegS"
                     /locus_tag="OQP62_003369"
     CDS             403..1302
                     /gene="yegS"
                     /locus_tag="OQP62_003369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid kinase YegS"
                     /protein_id="HCS1722824.1"
                     /translation="MANFPASLLILNGKSADNQPLREAITLLRDEGIQIHVRVTWEKG
                     DAQRYVDEARRLGVETVIAGGGDGTINEVSTALIQIRDGVAPALGLLPLGTANDFATS
                     AGIPEALDKALKLAIAGNAMEIDMARVNDKTCFINMATGGFGTRITTETPEKLKAALG
                     GVSYLIHGLMRMDTLTPDRCEIRGENFHWQGDALVIGIGNGRQAGGGQQLCPTALIND
                     GLLQLRIFTGEELLPALFSTLTQSDDNPNIIDGASAWFDIHAPHEITFNLDGEPLSGQ
                     EFHIEVLPGALRCRLPPDCPLLR"
     gene            complement(1355..2407)
                     /gene="fbaB"
                     /locus_tag="OQP62_003370"
     CDS             complement(1355..2407)
                     /gene="fbaB"
                     /locus_tag="OQP62_003370"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006820796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fructose-bisphosphate aldolase"
                     /protein_id="HCS1722825.1"
                     /translation="MTDIAQLLGKDADSLLQHRCMTIPSDQLYLPGKDYVDRVMIDNN
                     RPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPRYFDPKNIVELAI
                     EAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPTEYDQTLYASVEQAFNMG
                     AVAVGATIYFGSEQSRRQIEEISAAFERAHELGMVTVLWAYLRNSSFKKDGVDYHVSA
                     DLTGQANHLAATIGADIVKQKMAENNGGYKAVNFGYTDDRVYSKLTSDNPIDLVRYQL
                     ANCYMGRAGLINSGGADGGDTDLGDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKL
                     INAVQDVYLDSKVTIA"
     gene            2661..3932
                     /locus_tag="OQP62_003371"
     CDS             2661..3932
                     /locus_tag="OQP62_003371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1722826.1"
                     /translation="MKTTFKLSFMMFVEWFIWGAWFVPLWLWLNKSGFSAGEIGWSYA
                     CTAIAAILSPILVGSVTDRFFSAQKVLAVLMFAGAVLMYFAAQQTTFAGFFPLLLAYS
                     LTYMPTIALTNSIAFANVPDVERDFPRIRVMGTIGWIASGLACGFLPQMLGYNDISPT
                     NIPLLITAASSALLGVFAFCLPDTPPKSTGKMDIKVMLGLDALVLLRDKNFLVFFFCS
                     FLFAMPLAFYYIFANGYLTEVGMKNATGWMTLGQFSEIFFMLALPFFTKRFGIKKVLL
                     LGLITAAIRYGFFVYGGAETYFTYALLFLGILLHGVSYDFYYVTAYIYVDKKAPVHMR
                     TAAQGLITLCCQGFGSLLGYRLGGVMMEKMFAYPQPVNGLTFNWAGMWTFGAVMIAVI
                     ALLFMIFFRESDKEITAIDDRDIALTQGEVK"
     gene            3929..4933
                     /locus_tag="OQP62_003372"
     CDS             3929..4933
                     /locus_tag="OQP62_003372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribosylglycohydrolase family protein"
                     /protein_id="HCS1722827.1"
                     /translation="MKAERILGALYGQALGDAMGMPSELWPRTRVKAHFGWIDRFLPG
                     PKENNAACYFNRAEFTDDTAMALCLADALLECEGNIDPEIIGRNILAWAERFDAFNKN
                     VLGPTSKIALNAIRDGKPIAALENNGVTNGAAMRVSPLGCLLPPTNLTAFIAEVALAS
                     SPTHKSDLAVAGAVVVAWAVSRAVNGDTWQSIADSLPAIAHQAQTARITTFSASLSAR
                     LELALNIVRHADGVESASEQLYQIIGAGTSTIESVPCAIAMVELANTDPNRCAVLCAN
                     LGGDTDTIGAMATAICGALHGVSAINPQLKQTLDKVNQLDFARYAVALASYRQRREAL
                     "
     gene            4930..5895
                     /locus_tag="OQP62_003373"
     CDS             4930..5895
                     /locus_tag="OQP62_003373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1722828.1"
                     /translation="MNGARLLTLLPTLHTRRPLTVIGAAVIDIIADAWTLPRRGGDIE
                     LQQQSVNVGGCALNIAVALKRLGIDASNALPLGQGVWAERIRRRLAKEGLSSVIDAVE
                     GDNGWCLALVEPDGERTFMSFSGVENQWNADWLSQLRTPRGSLVYLSGYQLASSCGEP
                     LIQWLETVDDVTPFIDFGPRIGDITDDAMARIMACRPIVSLNRQEAIIAAERAGLATD
                     TRTFGEAWVKRFSAPLVVRHDKDGAWYFSAQSSGVVPAFPATVVDTIGAGDSHAGGVL
                     AGLASGWSLADAVLLGNAVASWVVGHRGGDCAPTREALLLAHKNV"
     gene            complement(5869..6615)
                     /locus_tag="OQP62_003374"
     CDS             complement(5869..6615)
                     /locus_tag="OQP62_003374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1722829.1"
                     /translation="MEQAHTRLIAQLNERISAADNTPLYMKFAQTVKDAVRSGILEHG
                     NILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRARGYGTQINNIFEYSLKEARGFS
                     QQVVLRGKKPDTLWVNKRVVSCPDEVAQHLAIPAGSDVFLLKRIRYVDEDAVSIEESW
                     VPAHLIHDVDAIGISLYDYFRRQHIYPQRTRSRVSARMPDDEFQSHIQMDGKVPVLVI
                     KQVALDQQQRPIEYSISYCRSDLYVFVCEE"
     gene            complement(6651..7451)
                     /gene="thiD"
                     /locus_tag="OQP62_003375"
     CDS             complement(6651..7451)
                     /gene="thiD"
                     /locus_tag="OQP62_003375"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HCS1722830.1"
                     /translation="MQRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQ
                     NTCGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRHHVRNV
                     VLDTVMLAKSGDPLLSPSAIETLRVRLLPQVSLITPNLPEAAALLDAPHARTEQEMLA
                     QGRALLAMGCEAVLMKGGHLEDAQSPDWLFTREGEQRFSAPRVNTKNTHGTGCTLSAA
                     LAALRPRHRCWGETVNEAKAWLSAALAQADTLEVGKGIGPVHHFHAWW"
     gene            complement(7438..8235)
                     /gene="thiM"
                     /locus_tag="OQP62_003376"
     CDS             complement(7438..8235)
                     /gene="thiM"
                     /locus_tag="OQP62_003376"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HCS1722831.1"
                     /translation="MQPDLHCRTLAAHTLKHFRALSPLTHCMTNDVVQTFTANTLLAL
                     GASPAMVIDPVEARPFAAIANALLINVGTLTASRADAMRAAVESAYDAKTPWTLDPVA
                     VGALEFRRRFCLDLLSLRPAAIRGNASEILALSGMALGGRGVDTTEAALAALPAAQAL
                     ARQIDCIVVVTGEIDYVTNGQRTLSIPGGDPLMTRIVGTGCALSAVVAASCALPGAAL
                     DNVASACCWMKLAGQVAAERSEGPGSFIPAFLDALYHLDMEAANATN"
     regulatory      complement(8267..8363)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            8645..8959
                     /gene="rcnB"
                     /locus_tag="OQP62_003377"
     CDS             8645..8959
                     /gene="rcnB"
                     /locus_tag="OQP62_003377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni(II)/Co(II) efflux transporter accessory
                     subunit RcnB"
                     /protein_id="HCS1722832.1"
                     /translation="MKSKLLPCALLLATSFAWAAPATTGIDQYELKSFIADFTHFKPG
                     DTVPQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFY
                     HR"
BASE COUNT         2029 a         2564 c         2431 g         2147 t
ORIGIN      
        1 gtctaaagaa catttcgatt ttatgctatt aaaaagtatg tttggtaata aatatcaggt
       61 ttttatctga tattgtggtg tttgaaatta atactgataa ctgacgtatg ttcgtcttgt
      121 taatcctccg tttcgttatt aaaggcgcta tatcggaaag cgtctggcta ccccttgtgg
      181 tttccttgca ctctcacaag cgctactcaa tgcgcatacc ggcatctctc ttgtcgccat
      241 ttgccttaaa ccatgcttcg cttaccgctg cgtacagcag gaagaaaaac ggtaaagcaa
      301 taagtgcgca acgtttcaat tttcatcctg ttctgacctc gctttttcat ttctgctata
      361 cactttctgg agattgttgt tcaacctatt aaggcataac ggatagctaa ctttcccgcc
      421 agcttactga tcctcaatgg caaaagcgct gataaccagc cgctacgtga ggccattacg
      481 ctacttcgcg acgaaggcat acagattcac gttcgggtaa cctgggaaaa aggcgacgcg
      541 cagcgttacg ttgatgaagc ccgtagactg ggcgttgaaa cggtgattgc cggcggcgga
      601 gacggtacca ttaatgaagt gtctaccgcg ctcatccaga tccgcgacgg cgtagccccc
      661 gcactgggcc ttttgccgct cggcaccgcc aacgattttg ccaccagcgc cggtattcct
      721 gaagcgctgg acaaagcgct gaaactggcg attgccggaa acgcgatgga aattgatatg
      781 gccagggtca atgataaaac ctgttttatc aatatggcga cgggcggttt tggcacccgc
      841 attaccaccg aaacgccgga aaaacttaaa gccgcgttgg gcggcgtctc ctatcttatt
      901 cacggtctga tgagaatgga tacgctgacc cctgaccgct gcgaaatacg tggcgaaaac
      961 tttcactggc agggagatgc gctggtgatc ggcatcggca acggtcgtca ggccggcggc
     1021 gggcagcaat tatgtcccac cgcgctgatt aacgacggac tgttacagct acggattttt
     1081 accggcgaag aactgctgcc ggcgctgttt tccacactca cgcagtcaga tgacaatccg
     1141 aatattattg acggcgcctc agcgtggttt gatattcatg caccgcatga aatcacgttc
     1201 aatctggatg gcgaaccact cagcgggcaa gaatttcata ttgaggtgct gcctggcgca
     1261 ttacgctgtc ggctgccgcc agactgcccg ttgctacgtt aataacacca gtcgctggcc
     1321 ggatgcgctc acatccggct tttcttcgtt gaactcaggc gatggtgact ttgctatcca
     1381 gatagacatc ctgtacggca ttaatcaact tcacgccatc agccatcgat ttcttaaagg
     1441 ctttacgtcc cagaattagt cccattccac cggctcgttt gttgatcacc gcggtacgaa
     1501 ccgcgtcgcc gagatcagtg tcaccgccgt ccgcgccgcc ggagttgata agcccggcgc
     1561 gtcccatata gcagttcgcc aactggtaac gaaccaaatc aatcgggtta tcgctggtca
     1621 gtttgctgta cacgcgatcg tcggtatagc cgaagttgac cgctttataa ccgccattat
     1681 tctcggccat tttctgtttc acaatatccg caccaatcgt agcggccaga tggttggctt
     1741 gccccgtcag gtcagcggat acatggtaat cgacgccgtc ttttttaaag gaagaattac
     1801 gcaggtaagc ccacaatacg gtcaccatac ccagctcatg cgcacgctca aaagcggcgg
     1861 agatctcttc aatctggcga cgggactgtt ccgaaccgaa atagatcgtc gcgcctaccg
     1921 ccacggcgcc catattgaac gcctgctcaa cgctggcgta cagggtctga tcgtactctg
     1981 tcggatagct caatgtttcg ttgtgattca gtttgaccaa aaacggaata cggtgcgcat
     2041 agcgccgtga aaccgaggcc agtacgccgt aggtagaggc cacgcagtta cagccggcct
     2101 caatcgccaa ttcaacaata ttttttgggt caaagtagcg cgggttggcc gcaaaagaag
     2161 cgccggcgga gtgctccact ccctgatcga cgggcagtat cgaaaggtat cctgttcccg
     2221 ccaggcgtcc agtattatag agcgtctgca tattacgcag aacggctggt ggacgattat
     2281 tgtcaatcat cacccggtca acgtaatcct tgccgggtag ataaagctga tcggaaggaa
     2341 tggtcataca acgatgctgt aaaaggctgt cggcgtcttt gccaagcaac tgcgcaatat
     2401 cagtcatagc tatgctcccg taagttccga tagggtatcg gaaggtgaat agtcctgccc
     2461 cgcagattgc gggtcgcaat aagcctggta ctgaccgacc atttttgcca actttagcgc
     2521 attttttcgg cgctatctgc tgactcgatt cacgtccgaa aaagtgttag atcggtcaaa
     2581 attaatgctc aatggtattt aaaaggtatt attaagtggt attgtcgtgg cgtaccttac
     2641 ctgtcatgaa ggattcaaaa atgaaaacga cctttaaact gtcgttcatg atgttcgtgg
     2701 agtggtttat ctggggcgcc tggttcgtcc ccctgtggct atggctaaat aaaagcgggt
     2761 tttccgccgg tgaaataggc tggtcttatg cctgtaccgc cattgcggcg atcctgtcgc
     2821 cgattctggt cggctccgtt accgaccgtt ttttctcagc gcaaaaagtc ctggcggtac
     2881 tgatgtttgc gggtgccgta ctgatgtatt tcgcggcaca gcaaaccacc tttgccggat
     2941 tctttccgct gctcctggcc tattcattga cctatatgcc gaccatcgcg ctgacaaaca
     3001 gcattgcctt cgctaacgta ccggacgttg aacgcgattt tccacgcatt cgcgttatgg
     3061 gaaccattgg gtggattgcc tccggcctcg cctgtggatt cttgccgcaa atgttaggct
     3121 ataacgatat ttcccccacc aacattccac tgctcataac cgccgcaagt tcagcgttgc
     3181 tgggcgtatt tgcgttctgt ctgccagaca cgccgccaaa aagcaccggc aagatggata
     3241 ttaaagtgat gctggggctg gatgcgctgg ttctgctgcg cgataaaaac tttctcgttt
     3301 tcttcttctg ttccttcctg tttgcgatgc cgctggcctt ctactacatc ttcgctaacg
     3361 gctatctgac agaagtggga atgaaaaacg ccaccggctg gatgacgctc ggccagttct
     3421 ctgaaatctt ctttatgctg gcgctaccct ttttcactaa gcgctttggt attaaaaagg
     3481 tattattact tggtcttatt accgccgcga tccgctacgg cttttttgtc tatggcggcg
     3541 cggagacgta cttcacttac gccctgctgt tcctcggtat tttgctgcac ggcgtaagtt
     3601 acgatttcta ctacgtcacc gcctacattt atgtcgataa aaaagcgccg gttcatatgc
     3661 gtaccgctgc gcaagggctt atcaccctct gctgtcaggg attcggcagc ctgctgggct
     3721 atcgtctcgg cggcgtgatg atggaaaaaa tgtttgctta tccgcaaccg gttaacggtc
     3781 tgacattcaa ctgggcgggc atgtggacgt ttggcgcagt gatgattgcc gtcatcgcgc
     3841 tactgtttat gattttcttt cgcgaatcgg acaaagagat cactgctatt gacgatcgcg
     3901 atattgcgtt gacacaaggg gaagtaaaat gaaagcagaa cgtattctcg gtgctcttta
     3961 cgggcaagcg ttaggggatg cgatgggaat gccctctgag ctgtggccga gaacgcgcgt
     4021 caaagcgcat ttcggctgga ttgaccgctt tctgcccggc ccaaaagaaa ataatgccgc
     4081 ctgctatttt aaccgcgcgg agtttacgga cgataccgca atggcgctct gcctggccga
     4141 cgcgctactc gaatgcgaag gcaacattga tcccgagatt attgggcgta acatcctcgc
     4201 ctgggcggaa cgctttgatg cgttcaataa aaatgtactc ggcccgacgt caaaaattgc
     4261 gctgaatgcg attcgcgacg gcaaacccat cgcggcgctg gaaaataacg gcgtgactaa
     4321 cggcgcggcc atgcgcgttt cgccgttggg ctgcctgttg ccgccaacta acctgacagc
     4381 ctttatagca gaagtagcgt tagcctccag cccgacgcat aaatccgatc tggcggtggc
     4441 tggcgccgtg gttgtcgcct gggccgtctc gcgagcggtt aacggcgaca cgtggcaaag
     4501 tattgccgac tcgctccccg ccatcgccca tcaggcgcag acagcgcgta ttaccacgtt
     4561 tagcgcctcg ctatcggcac gtctggaact ggcgctaaac attgtccgcc acgccgacgg
     4621 cgtcgaatct gccagcgaac agctctatca gatcatcggc gcgggaacca gcaccattga
     4681 atcggttccc tgcgctatcg ccatggtgga gctggcgaat accgatccta accgctgtgc
     4741 cgtgctgtgc gctaacctcg gcggcgatac cgacactatc ggcgcgatgg ctaccgccat
     4801 ttgcggcgcg ttgcacgggg taagcgccat taacccccag ttaaagcaaa cgctggacaa
     4861 ggttaatcag ctggattttg cgcgctatgc cgttgcgctg gcgagctatc gtcaacggcg
     4921 ggaggcacta tgaacggcgc acggttgctg acattattac cgaccctgca tacccggcgt
     4981 ccgctcaccg ttatcggcgc ggcagtgatc gatatcattg ccgacgcctg gacgttgccg
     5041 cgtcgcggag gcgatattga actgcaacaa cagagcgtca atgtcggcgg ctgtgcgctg
     5101 aatattgccg tggcgttgaa acgactgggg attgacgcca gcaatgcgct gccgctgggc
     5161 cagggcgtgt gggcggagag gattcgccgc cgtctggcaa aagagggatt atccagcgtg
     5221 attgacgcgg ttgaaggaga taacggctgg tgtctggcgt tagtcgaacc ggatggcgaa
     5281 cgcacgttta tgtcttttag cggcgtggaa aaccagtgga atgcggactg gctgtcgcag
     5341 ctcaggacac cgcggggcag tcttgtctac ctgtccggct atcaactggc ctcgtcctgt
     5401 ggcgagccac tgatccagtg gctggaaacc gtcgacgatg taacgccttt tatcgatttt
     5461 ggcccgcgaa tcggtgatat tacagacgat gcaatggcgc gcattatggc ctgccggccc
     5521 atcgtatccc tcaatcgcca ggaagccatc atcgccgcgg aacgcgccgg gcttgcgacc
     5581 gatacccgca ctttcggcga agcatgggta aaacgctttt ccgcgccgct ggtggtgcgc
     5641 cacgataaag acggagcgtg gtattttagc gcgcaatctt ccggcgttgt gccagcgttt
     5701 ccggcaaccg tggtggatac catcggcgca ggcgacagcc atgctggcgg cgtgctggca
     5761 ggactggcgt caggctggtc gctcgcggat gccgtactgc tgggaaatgc ggtggcgagc
     5821 tgggtggtcg ggcatcgcgg cggcgactgc gcgcccacgc gcgaggcgct actcctcgca
     5881 cacaaaaacg tataggtcgc tacgacaata actgatgctg tattcaatag gccgctgctg
     5941 ctgatcgagc gccacctgct taatcaccag caccggcact ttaccatcca tttgaatatg
     6001 cgactgaaac tcatcatccg gcatccgggc gctgacgcgg gatcgggtac gctgagggta
     6061 aatgtgctgg cgacgaaaat agtcatacag cgaaatgcca atcgcgtcga catcatgaat
     6121 cagatgcgcg ggcacccagg actcttcaat cgataccgcg tcctcatcaa cataacgaat
     6181 gcgtttgagt aaaaagacgt cgctgcctgc ggggatcgcc agatgctgcg cgacctcatc
     6241 cggacaactt accacgcgtt tgttaaccca tagcgtatcc ggttttttgc cgcgcaagac
     6301 aacctgctga gaaaatcccc gcgcctcttt cagggaatat tcaaagatat tattgatttg
     6361 cgtaccgtag ccgcgggcgc gcgtgacgac cccctcttct tccagcgcct gcatcgcttt
     6421 tcgtaccgtg atgcgcgaga cgccggtaag ctggctgaga tcgcgttcgc caggcaaaat
     6481 attaccgtgc tcaagaatac cgctgcgcac ggcatccttt accgtctggg cgaatttcat
     6541 gtatagcggc gtattatccg ccgctgaaat tcgttcattc agttgcgcga tgagccgggt
     6601 atgcgcttgt tccatttatc tttcctgacg acgggtctgt aggcagtata ctaccaccac
     6661 gcgtggaaat gatgtaccgg accaatgccc ttccccactt ccagcgtgtc cgcctgcgcc
     6721 agcgccgccg aaagccatgc cttcgcctcg tttaccgtct ctccccaaca gcgatgccgg
     6781 ggccgtaacg ccgccagcgc cgccgacagc gtacagcccg tcccatgcgt atttttggtg
     6841 ttcacacgcg gcgcgctaaa acgttgctcg ccctcacggg taaagagcca gtccgggctt
     6901 tgcgcatcct ctaaatgccc gcctttcatc aataccgctt cacaccccat cgccagtaac
     6961 gcccgcccct gcgccagcat ctcctgttcc gtacgtgcat ggggcgcatc cagcaacgct
     7021 gcggcttccg gcaaattagg cgtaatcagc gatacctgtg gcaacagccg gacgcgtaat
     7081 gtttctatcg cagagggcga gagcagcgga tcgccgcttt tcgccagcat caccgtatcc
     7141 agcaccacat tacgtacatg atgacgctgt agtcgctccg ccacggcctc gacaatatcg
     7201 gtttccgcca gcatcccgat ttttgtggta tcaatgcgca catcgctgaa cacggaatca
     7261 agttgagcgg cgacaaagtc cggctctatc cggtacaccg actgtacgcc acaggtattt
     7321 tgcgccacca gcgcggtgat gaccgaacag ccatatgcgc ccagcgcgga aaaggtcttg
     7381 agatccgcct ggataccggc cccgccgctg ggatcggtgc cggcaatcgt cagcgcgtta
     7441 attcgttgca ttggccgcct ccatatccag atgatagagc gcatcaagaa aagccgggat
     7501 gaagctgccc ggtccttcgc tacgctctgc cgcgacctgt ccagccagtt tcatccagca
     7561 gcaggccgac gcgacattgt ccagcgcggc gcccggtaac gcgcaactgg cggcgacaac
     7621 cgccgacaac gcgcagccgg tgcctacaat gcgagtcatt aacggatcgc cgccgggaat
     7681 gctcagcgtg cgctgaccat tagtgacgta atctatctct ccggtaacca caacgatgca
     7741 gtctatctga cgcgccagcg cctgcgccgc aggcagtgcg gccaacgccg cctcggtggt
     7801 atctacgccg cgtccgccca gcgccatgcc ggataacgcc aggatttccg aggcgttgcc
     7861 gcgtattgcc gccgggcgca gggacaagag atccaggcaa aatcgccgac gaaattccag
     7921 cgcgcccacc gcgacaggat caagcgtcca cggcgttttg gcatcataag cgctttctac
     7981 cgccgcacgc atcgcgtcag cgcgtgaggc agttaatgtt ccgacattaa tcagcaaggc
     8041 gttggcgatg gcggcaaacg gtctggcctc gacaggatca atcaccatgg cgggtgaagc
     8101 gcccagcgcc agcaacgtat tggcggtaaa cgtttgtacg acgtcattcg tcatacagtg
     8161 cgtaagcggg gagagcgcgc gaaagtgttt taacgtatgc gccgcaagcg tgcggcagtg
     8221 caggtcaggc tgcatggttc agctcctgcc cgcgtgaaga agggacacga gcagtgtcag
     8281 acttccctac gctggcatta tccagatcag gtggtacggg tatttctcag ccttcacaaa
     8341 gaagggcacc ccgagtcgtc aagccccacc gtgttaagcg gggtttcgct attaagcata
     8401 ctgtctgtgc cagacaatgt aaatttacag tcagcggcgg acgataattt tagcgttatc
     8461 agatagttct caaaacctat tcggttctgg caaacttgct ggcggatatg ttgctgcacg
     8521 acgctttcgt ttacactttt tacgaaaagg ggcgtgagat aacaaaatag cgcttgtcag
     8581 atacgccacc agcagaaatg atacacacga tgttaactga cccgcatatg tggagggtaa
     8641 aagtatgaaa agtaagttgc tgccttgcgc gctgttgctt gcaaccagtt ttgcatgggc
     8701 cgcccccgcg acaacgggca ttgatcaata tgagttaaaa agctttatcg ccgacttcac
     8761 ccacttcaag cccggcgata ccgttccgca aatgtaccgc accgatgagt ataatattaa
     8821 acagtggaaa ttacgtaatc tgcccgcgcc agatgccggt actcactgga cctatatggg
     8881 cggcgcgtat gtactgatta acgataccga tggaaaaatc atcaaagcct atgatggcga
     8941 gattttttat catcgataaa aaaagccccc tcatccagag ggggaaatac agccccatgt
     9001 tactttttta ttagccctta atcactctat ccccttcaaa cctccttttt gttgactgcc
     9061 ttcactaccc gattcgctct ggatctcgcc cttttgaaac taccgcatac cacattagaa
     9121 tttattgcag aaagattgtc atcccggtca cttattattg taagtgaccg g
//
LOCUS       DAJVSD010000185         9146 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.185, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000185 DAJVSD010000000
VERSION     DAJVSD010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 9146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9146
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.185"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..1385
                     /locus_tag="OQP62_003378"
     CDS             <1..1385
                     /locus_tag="OQP62_003378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000669888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
                     /protein_id="HCS1722833.1"
                     /translation="QSALFTIDVKKVSPEFKDRLYLLNNTKDKSGNGTRTVWNNPTGG
                     ALEWNFTTANAIIDTSGDIRWFMNPSSIYDLKSIYRAGVMMGFKQNQDGALSWGYGQR
                     YVKYDIMGREIFNRRLPDNYNDFSHSMDNAPNGHYFLRVASSNYKRPDGKNVRTVRDV
                     IAEVDQNGVVVDEWRLFDILDPYRDVIMKTLDQGAVCLNIDASQSGHTLSEEDLAALD
                     SSDKFGDIVGSGAGRNWAHVNSVDYDSEDDSIIISFRHQSAIIKIGRDKKVKWILGTP
                     AGWKAPFNAAILTPVDSKGQKISCQESGCEGDFDWTWTQHTAFKIDSKSKGDILYLSA
                     FDNGDGRGLEQPAMQSMKYSRSVIYKIDQKNKTVQQIWQYGKERGNEWFSPVTSITEY
                     QTDKNSVFVYSATAGGEFDLSVGAFTSLPNPYLEEFRWGEKEPAVEMQIHGARGYQAM
                     PFSLTKALTE"
     gene            complement(1582..2745)
                     /gene="fadA"
                     /locus_tag="OQP62_003379"
     CDS             complement(1582..2745)
                     /gene="fadA"
                     /locus_tag="OQP62_003379"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase FadA"
                     /protein_id="HCS1722834.1"
                     /translation="MEQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPS
                     LTAATLDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAA
                     RMIMTGDAQVCLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLSRLHGI
                     SREMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEA
                     LSTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCD
                     PSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINL
                     NGGAIALGHPLGCSGARISTTLINLMERKDAQFGLATMCIGLGQGIATVFERV"
     gene            complement(2755..4944)
                     /gene="fadB"
                     /locus_tag="OQP62_003380"
     CDS             complement(2755..4944)
                     /gene="fadB"
                     /locus_tag="OQP62_003380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid oxidation complex subunit alpha FadB"
                     /protein_id="HCS1722835.1"
                     /translation="MLYKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGQALE
                     VLEKQHDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLP
                     VPTLAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRMLGA
                     DSALEIIAAGKDVGAEHALKIGLVDGVVKQEKLIEGAIAVLRQAITGDLDWRAKRQPK
                     LEPLKLSKIEAAMSFTIAKGMVAQTAGKHYPAPMTAVKTIEAAARFGREEALNLENKS
                     FVPLAHTNEARALVGIFLNDQYVKGKAKKLTKDIETPKQAAVLGAGIMGGGIAYQSAW
                     KGVPVIMKDINDKSLNLGMTEAAKLLNKQLERGKIDGLKLAGVISTIHPTLDYAGFDR
                     VDVVVEAVVENPKVKKAVLAETEQKVRPETVLASNTSTIPIGELASALERPENFCGMH
                     FFNPVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNNCPGFFVNRVLFPYFA
                     GFSQLLRDGADFRKVDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQK
                     EYRDAIDALFDASRFGQKNGLGFWRYKEDSKGKPKKEEDAAVDDLLASVSQTKRDFSD
                     DEIIARMMIPMINEVVRCLEEGIIASPAEADMALVYGLGFPPFHGGAFRWLDTQGSAK
                     YLDMAQQYQHLGPLYEVPEGLRDKTRHNEPYYPPVEPARPVGSLKTA"
     gene            5134..6465
                     /gene="pepQ"
                     /locus_tag="OQP62_003381"
     CDS             5134..6465
                     /gene="pepQ"
                     /locus_tag="OQP62_003381"
                     /EC_number="3.4.13.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020801804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidase"
                     /protein_id="HCS1722836.1"
                     /translation="MESLAALYKNHIVTLQERTRDVLARFKLDALLIHSGELFNVFLD
                     DHPYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPTSFWTE
                     EVEVVALPKADGIGSQLPAARGNIGYIGPVPERALQLDIAASNINPKGVIDYLHYYRA
                     YKTDYELACMREAQKMAVSGHRAAEEAFRSGMSEFDINLAYLTATGHRDTDVPYSNIV
                     ALNEHAAVLHYTKLDHQAPSEMRSFLLDAGAEYNGYAADLTRTWSAKSDNDYAHLVKD
                     VNDEQLALIATMKAGVSYVDYHIQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMP
                     HGIGHPLGLQVHDVAGFMQDDSGTHLAAPSKYPYLRCTRVLQPRMVLTIEPGIYFIES
                     LLAPWREGPFSKHFNWQKIEALKPFGGIRIEDNVVIHENGVENMTRDLKLA"
     gene            6465..7079
                     /locus_tag="OQP62_003382"
     CDS             6465..7079
                     /locus_tag="OQP62_003382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMPACT family protein"
                     /protein_id="HCS1722837.1"
                     /translation="MDSWLIPAAPVTVVEEIKKSRFITLLAHTDGVEAAKAFVELVRA
                     EHPDARHHCAAWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGVGEITAVVVRY
                     YGGILLGTGGLVKAYGGGVNQALRQLATQRKTPLTEYTLQCEYGQLAGIEALLGQFAG
                     KIVSSDYQASVRLRVALPFAHVNAFSTKLADFSRGSLQLLAIEE"
     gene            7118..8569
                     /gene="trkH"
                     /locus_tag="OQP62_003383"
     CDS             7118..8569
                     /gene="trkH"
                     /locus_tag="OQP62_003383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkH"
                     /protein_id="HCS1722838.1"
                     /translation="MHFRAITRIVGLLVILFSGTMILPGLVALIYRDGAGGAFTQTFF
                     VALAIGSILWWPNRREKGELKSREGFLIVVLFWTVLGSVGALPFIFSESPNLTITDAF
                     FESFSGLTTTGATTLVGLDSLPHAILFYRQMLQWFGGMGIIVLAVAILPVLGVGGMQL
                     YRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTVACALALWFAGMPAFDAIGHSFSTI
                     AIGGFSTHDASVGYFDSPTINTIIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRM
                     FIGVQLTLVVICTLVLWFHNIYDSALTTLNQAFFQVVSMATTAGFTTDSIARWPLFLP
                     VLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGNRALPER
                     ILEAVWGFFSAYALVFIVSMLAIIATGVDDFSAFASVVATLNNLGPGLGVVADNFASM
                     NPVAKWILIANMLFGRLEVFTLLVLFTPTFWRE"
     gene            8581..9126
                     /gene="hemG"
                     /locus_tag="OQP62_003384"
     CDS             8581..9126
                     /gene="hemG"
                     /locus_tag="OQP62_003384"
                     /EC_number="1.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone-dependent protoporphyrinogen IX
                     dehydrogenase"
                     /protein_id="HCS1722839.1"
                     /translation="MKTLILFSTRDGQTREIASYLASELKEMGIWADVVNLHRAEEPD
                     WDSYDRVVIGASIRYGHYHSAFQEFVKKYATRLNGMPSAFYSVNLVARKAEKRTPQTN
                     SYARKFLMSSPWRPDYCAVIAGALRYPRYRWYDRLMIKLIMKMSGGETDTSKEVVYTD
                     WEQVAHFAREIAHLTNKSSAK"
BASE COUNT         2057 a         2381 c         2493 g         2215 t
ORIGIN      
        1 aacaatcagc actctttact atcgatgtta aaaaggtttc cccagaattt aaagatcgct
       61 tgtatctttt gaataatacg aaagataagt ctgggaatgg aacgcgtact gtctggaaca
      121 accctactgg gggtgcatta gaatggaact tcactacagc taacgctatt atcgacacct
      181 ccggtgatat tcgttggttt atgaatccaa gttcaattta tgatttaaag tcaatttatc
      241 gtgctggcgt tatgatgggc tttaaacaaa accaggatgg cgcactatcg tggggctacg
      301 gtcagcgtta tgtgaaatac gatatcatgg ggcgtgaaat cttcaaccgc cgcctgccgg
      361 ataattataa cgatttttca cactcaatgg ataacgcgcc caacggtcac tacttcctgc
      421 gtgtagccag ctctaactat aaacgtcctg atgggaaaaa tgttcgtacc gtgcgtgatg
      481 tgattgccga agttgatcag aacggcgtgg tagtggatga atggcgtctg tttgatatcc
      541 tcgatcctta tcgtgatgtg ataatgaaaa ccctcgatca gggcgcagtg tgcctgaata
      601 tcgacgccag ccagtccggc catacgttga gcgaagaaga tctggcggcg ctggactcct
      661 ccgacaaatt cggggatatc gtgggtagtg gggctggccg caactgggcg catgtcaaca
      721 gcgtcgacta tgacagtgaa gatgattcca tcatcatcag cttccgccac cagagtgcga
      781 ttatcaaaat cggtcgcgat aagaaagtga agtggatact tggtacgcct gctggctgga
      841 aagcgccatt taatgccgca attctgacgc ctgtggatag caaaggccaa aaaatttcct
      901 gccaggaaag tggctgtgag ggtgacttcg actggacatg gacgcaacat acggccttta
      961 aaattgatag taagagtaaa ggcgatatct tatacctttc cgctttcgac aatggtgatg
     1021 gccgcggctt agaacagcct gctatgcaga gtatgaaata cagccgctcc gtgatttaca
     1081 aaatcgacca gaaaaacaag acagtccaac agatctggca atacggtaaa gagcgcggga
     1141 acgagtggtt tagcccggta acctctatca ccgagtacca gactgacaag aattctgtgt
     1201 tcgtgtattc cgcaacagca ggtggtgagt ttgatttgtc ggtaggcgca tttaccagct
     1261 tgcctaaccc gtatctggaa gagttcagat ggggagaaaa agagcctgcg gtcgaaatgc
     1321 aaatacatgg tgcgcgtgga tatcaggcta tgccatttag cctgaccaaa gcgcttactg
     1381 agtagagcag gccacacggt gaaaaaaccc gcccctgacg ggcgggaaaa acggcaacta
     1441 aactgttccc cgtcataact cacgctgcct ctttgttggc tgcctttgtt caccccgggc
     1501 atatagttat ctatgttccc ggggattcgc tcagttgccg ccgcgctgca acgtgaatta
     1561 tttaggggac attatcttta attaaacccg ctcaaacacc gtggcgatgc cctgacccag
     1621 accaatacac atcgtcgcca gaccaaactg cgcgtctttg cgctccatca ggttgataag
     1681 cgtggtgctg atacgtgctc cggagcagcc gagcggatgg ccaagcgcga tcgcgccgcc
     1741 gttgaggttg atcttctcgt ctatctgctc catcaatccc agatccttaa tgcatggcag
     1801 gatctgtgcg gcaaacgctt cgttcatctc aaacacatcg atatcgctgg ccgacagtcc
     1861 cgcttttttc aacgccagtt ttgacgccgg aaccggcccg taacccataa ttgacggatc
     1921 acaacccacc actgccattg agcgaatacg ggcgcgaggt ttcagaccca gctcacgggc
     1981 acgactttcg ctcattacca gcatggcggc tgcgccatcg gaaagcgcgg atgaggtgcc
     2041 cgccgtgacc gtgccactaa ccggatcaaa tgccggacgc agcgttgata gcgcttcgac
     2101 cgtggtttcc gggcggatca cttcatcgta gttaaactgc ttcaacacgc cgtctgcatc
     2161 atgaccgcca gtcgggataa tctccgtttt gaatgcgcca gactgggtgg cggcccaggc
     2221 gcgagcgtga gaacgcgcgg cgaactggtc ctgcatttcc cggctaatgc cgtgcaggcg
     2281 ggagagcatt tccgccgtta gccccatcat ccctgctgct ttggcgacgt tgcggctcag
     2341 acccgggtga aaatccacgc cgtggctcat cggcacgtgc cccatatgct ccacgccgcc
     2401 aaccagacaa acctgcgcat cgccggtcat gatcattcgc gctgcatcgt gtaacgcctg
     2461 catcgaggaa ccacacagac ggttgacggt gaccgccggt accgaatggg gaatttctgc
     2521 cagcagcgcg gcgttacggg caatgttgaa gccttgctcc agcgtttgtt gtacgcagcc
     2581 ccagtaaata tcatcgaggg tcgccgctgt aagcgacgga ttacgcgcca gcaggctacg
     2641 cattaagtgg gcggagagat cttctgcccg cacgttgcga aacgcgccgc ccttcgaacg
     2701 gcccatcggg gtgcgaatgg catcgacaat gacaacctgt tccattgtga ctccttaagc
     2761 cgttttcaga gaaccaaccg gacgggctgg ttcaaccggg ggataatacg gttcgttatg
     2821 gcgcgtttta tcacgcagcc cttccggcac ttcatacagc gggccgaggt gttgatactg
     2881 ctgcgccata tcaagatatt tcgcgctgcc ctgtgtatcc agccagcgga atgcgccgcc
     2941 gtggaacgga gggaagccca ggccgtagac cagcgccata tcggcttccg ccgggcttgc
     3001 gataatgcct tcttccagac agcgaaccac ttcgttaatc atcgggatca tcatacgggc
     3061 gattatctcg tcgtcgctga agtcgcgttt cgtctgactg acgcttgcca gcaggtcatc
     3121 caccgcagca tcttcttctt tcttcggctt acccttgctg tcttctttat agcgccagaa
     3181 gcccagaccg tttttttgcc caaaacggct ggcgtcaaac aatgcgtcga tcgcgtcgcg
     3241 atactctttc tgcatccgtt gtgggaagcc tgccgccatt accgcctgcg cgtggtgggc
     3301 ggtatcaata cccaccacgt cgagcagata ggccgggccc atcggccagc cgaactgttt
     3361 ttccatcact ttatcgactt tgcggaaatc cgcgccgtcg cgcagcagtt gactgaaacc
     3421 ggcgaaatag gggaacagca cgcggttaac aaagaagccg gggcagttgt tgactacaat
     3481 cggtgtcttg cccattttgc tggcccaggc gacgactttg gcaatggttt cgtctgaact
     3541 cttctcgccg cgaatgattt caaccagcgg catccggtgt accgggttga agaagtgcat
     3601 tccgcaaaag ttttccggac gttccagggc gcttgccagt tcgccaattg ggatggtgga
     3661 ggtatttgag gccagcacgg tttctgggcg cactttctgc tcggtttccg ccagtaccgc
     3721 ttttttgact ttcggatttt cgactaccgc ttcgacaaca acatctacgc gatcgaaacc
     3781 ggcataatcg agagtcgggt ggatggtcga aatgacgccc gccagcttca gaccgtcgat
     3841 cttgccgcgc tccagctgtt tgttcagcag cttggccgct tcggtcatgc cgaggttcaa
     3901 cgatttatcg ttgatatctt tcatgatgac cggtacgcct ttccaggccg actggtaagc
     3961 gataccgccg cccataatgc ccgcgcccag tacggctgcc tgtttcggcg tctcaatatc
     4021 tttggtcagc tttttggctt taccttttac atattgatcg ttgaggaaga taccgaccag
     4081 cgcacgagcc tcattggtat gcgccagcgg aacaaagctt ttattttcca gattcagcgc
     4141 ttcttcacga ccaaaacgcg cggcggcttc aatggttttc actgcggtca tcggcgccgg
     4201 ataatgttta cccgccgttt gtgcgaccat gcctttagcg atggtaaagc tcatcgccgc
     4261 ttcaattttg ctgagtttca acggttccag tttcggctgg cgtttagctc tccagtcgag
     4321 atcgccggta atggcctggc gtaacaccgc tatcgcgcct tcaattagct tctcttgttt
     4381 gaccacgccg tccacaaggc cgattttcag cgcgtgctca gcaccgacat ctttacctgc
     4441 cgcgataatc tccagcgcgc tgtccgcgcc cagcatacgc ggcagacgaa cggagccgcc
     4501 gaaacccggc atgatgccca gtttagtttc cggcagaccg atacggaggt ctggcgtcgc
     4561 cagacggtaa tcggtcgcca gcacgcattc acacccgccg cccagcgcat agccgtttac
     4621 ggcggcaagg gtcggtacgg gtaaatcttc cagacggtta aagacgctat tagcgaaatg
     4681 cagccattgg cttaactgct cttcggggac gaggaacagt gaaagaaatt cggtgatgtc
     4741 cgcgccgaca ataaaggccg ctttattaga gcgcagcagc agccctttta aatcgtgttg
     4801 cttttccagc acctcaagcg cctggccgag gctggcgacg gttgcggtgt cgagtttatt
     4861 gaccgagcct ggagcatcga acaccagttc ggcgatgcca tcttccagcc agtcgaggta
     4921 cagggtgtcg cctttataaa gcatgtcagt ctcctgaatc cacaaggtga tctggtcgta
     4981 tcagatgaag cgaagtgtgt attttgtgtt aataaaatgc aaataaatga ttaaagaaat
     5041 gccgatgtga tcacgctcgg cagagatcac gctctcgtgg ggcgatgtgc taagatgcgg
     5101 aaacttgagg tcaaaaaaac agaagggtaa aaaatggaat cactggccgc gctctataaa
     5161 aatcatattg ttaccttaca agaacggacg cgcgatgttc tggcgcgctt taagctggat
     5221 gcgttactta ttcattccgg cgagcttttc aacgtctttc tcgacgatca cccttatccg
     5281 tttaaggtca atccgcagtt taaagcgtgg gtgccggtaa ctcaggttcc aaattgctgg
     5341 ctgctggtcg atggcgtcaa caaacccaaa ttgtggtttt atctgccggt cgattactgg
     5401 cataacgttg aaccgctgcc aacgtcattc tggacagaag aagtcgaggt cgtcgcctta
     5461 ccgaaagcgg atggcatcgg cagccaactt cctgccgcgc gtggcaatat cggctatatc
     5521 ggcccggttc ctgagcgcgc gctacaattg gatatcgccg ccagcaacat caacccgaaa
     5581 ggtgttatcg actatctgca ttactaccgc gcctataaaa cggattatga actggcctgt
     5641 atgcgcgaag cgcagaaaat ggcggtgagc ggtcatcggg cggcggaaga ggccttccgt
     5701 tccggcatga gcgagtttga catcaacctg gcgtacctga ccgccacggg acatcgcgat
     5761 accgatgttc cgtacagcaa cattgtggcg ctgaacgaac atgccgccgt gctgcattac
     5821 acgaaactgg atcatcaggc accgtctgaa atgcgcagtt tcctgctgga tgcgggcgcg
     5881 gaatacaacg gctacgcggc ggatctgacg cggacctggt cggcgaaaag cgataacgac
     5941 tacgcccacc tggtgaaaga tgttaacgac gaacagttgg cgctgatcgc taccatgaag
     6001 gcgggcgtta gctatgtgga ttatcatatt cagttccatc agcgcatcgc aaagctgctg
     6061 cgtaagcatc aaatcattac cgacatgagt gaagaggcga tggtggaaaa tgatctcacc
     6121 gggccgttta tgccgcacgg tattggtcat ccgttgggtc tgcaggtaca cgatgtggcc
     6181 gggtttatgc aggatgattc cggtacgcat ctcgccgcgc cgtccaaata cccgtatctg
     6241 cgctgcacgc gtgtgttaca gccgcgaatg gtgttgacca tcgaaccggg gatttacttc
     6301 atcgaatcgc tgttagcgcc gtggcgcgaa gggccattca gcaagcactt caactggcag
     6361 aaaattgaag cgctcaagcc tttcggcggt attcgcattg aagataacgt ggtcatccac
     6421 gaaaacggcg tggaaaacat gacgcgggat ttaaaactgg cgtaatggac agttggttaa
     6481 tccctgcagc gccggtcacc gttgttgaag agatcaaaaa aagccgcttt attacgctat
     6541 tggcgcatac cgatggcgta gaggcggcga aagcgtttgt tgagttagtc agagctgagc
     6601 accctgatgc gcgccaccat tgtgcggcgt gggtggcggg tgcgccggac gactcacaac
     6661 aactgggctt ttcagacgac ggcgagccgg cgggaacggc aggcaagccg atgcttgcgc
     6721 aattgatggg cagcggcgtc ggagaaatta ctgccgtcgt cgtgcgctac tatggtggta
     6781 ttctgctggg tacgggcggg ctggtaaaag cctatggcgg cggtgtgaat caggcattac
     6841 gtcagcttgc cacacaacgc aagacgccat taaccgaata tactttgcag tgtgagtacg
     6901 gtcagttggc cggaatcgaa gcattattag gacagtttgc cgggaagatc gtttccagcg
     6961 attatcaggc gtctgttcgg ctcagggtgg cgcttccttt tgctcatgtg aatgcatttt
     7021 ccacaaaact ggcggatttt agccgtggtt cattgcaatt gttagcgatt gaagaataat
     7081 ccccacctca tttttaagaa taaaggaagc ggcagagatg cattttcgcg ccattacccg
     7141 aatcgttgga ctactggtta tcttattttc ggggacaatg attctcccgg gactggtagc
     7201 gctaatatat cgtgatggcg caggaggagc gttcacgcag accttttttg tcgcgctggc
     7261 gatcggttcc atactgtggt ggccaaatcg tagggaaaag ggcgagctga aatcccgcga
     7321 aggatttctt atcgtggtgc tgttctggac cgtgctgggc agcgtgggtg cgctgccgtt
     7381 tattttctcg gaaagcccaa acctcaccat taccgatgct ttttttgaat cgttctccgg
     7441 gttaaccacc acgggcgcca ctacgctggt ggggctggat tcattaccgc acgccattct
     7501 cttttatcgt cagatgctgc aatggtttgg cggtatgggg atcattgtgc tggcggtggc
     7561 gattctccct gtcctcggcg tcggggggat gcagctctat cgggcagaaa tgccggggcc
     7621 gctcaaagat aacaaaatgc gcccgcgtat tgccgagacg gcgaaaacgc tgtggcttat
     7681 ctatgtcttg ctaacggtag cctgcgcgct ggcgctatgg tttgcaggga tgcccgcgtt
     7741 tgacgctatc ggacacagct tctccactat cgctatcggc ggcttctcaa cgcatgacgc
     7801 cagcgtaggc tattttgata gtcccactat taataccatc atcgctattt tcctgctgat
     7861 ctccggttgt aactatggcc tgcatttctc tttattaagc gggcgtagcc tgaaggtata
     7921 ctggcgcgat ccggaattcc gcatgttcat cggcgtacag ttgacgctgg tggtgatctg
     7981 cacgctggta ctgtggttcc ataatatcta cgactcggcg ctgacaacgc taaatcaggc
     8041 gttcttccag gttgtgtcga tggcgacaac ggcagggttt accacggaca gcattgcgcg
     8101 ctggccgctg tttttgcccg tcttgctgct atgttccgcg tttattggcg gttgcgccgg
     8161 gtcaacgggc ggggggttaa aggtcatccg tattctgttg ttatttaaac aggggaaccg
     8221 cgaactcaaa cgtctggtgc atccgaatgc cgtttacagt attaagctgg ggaaccgggc
     8281 gctgccagag cgtattctgg aagccgtctg gggattcttt tctgcctacg cgctggtatt
     8341 tatcgtcagt atgctggcca ttatcgctac aggcgtagat gatttctcgg ctttcgcctc
     8401 ggtagtggct acgcttaata acctgggacc ggggctgggg gtggttgctg ataacttcgc
     8461 cagtatgaat ccggttgcga aatggatact catcgccaac atgctatttg gtcgtctgga
     8521 agtattcact ttgctggtac tttttacccc gactttctgg cgtgaataat ggagtaacac
     8581 gtgaaaacat tgattctttt ctctacccgg gacggacaaa cgcgcgaaat tgcctcttat
     8641 ctggcttctg aactcaaaga gatggggatc tgggccgatg tcgttaatct gcatcgcgca
     8701 gaagagcctg actgggatag ctatgatcgc gtagtgattg gcgcgtctat tcgttatggt
     8761 cattaccaca gcgcctttca ggagtttgtt aagaaatatg ccacgcggtt gaacggaatg
     8821 ccgagcgcct tttattccgt taacctggtg gcgcgtaaag ctgaaaaacg gacgccgcag
     8881 actaacagct acgcgcgtaa gtttttaatg agttctccgt ggcgacctga ctactgtgcc
     8941 gtcattgcag gcgcgcttcg ctatccccgc tatcgctggt atgaccgtct gatgatcaag
     9001 cttattatga agatgtcggg cggcgaaacg gataccagta aagaagtggt gtacaccgac
     9061 tgggagcaag ttgcgcactt tgcccgtgaa atagcccatt taaccaacaa atcgtcggca
     9121 aaataaacgc aaagaataaa aagtgc
//
LOCUS       DAJVSD010000186         8945 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.186, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000186 DAJVSD010000000
VERSION     DAJVSD010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8945)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8945)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8945
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.186"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            4..315
                     /locus_tag="OQP62_003385"
     CDS             4..315
                     /locus_tag="OQP62_003385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000107428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722840.1"
                     /translation="MSTREDNATRSMGGKLALWVFYTFCGYFIWAMARCVWLMSAIQT
                     EPVLGPISTPGSATEKWLNALSLGVVWLILGSIAWYTRPRKNRGYPADTQPETRKHAR
                     M"
     gene            395..1090
                     /locus_tag="OQP62_003386"
     CDS             395..1090
                     /locus_tag="OQP62_003386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohydrolase"
                     /protein_id="HCS1722841.1"
                     /translation="MDSGYWQSQFEDWLRHHHQEQDAAHDIFHFRRVWATAQTLGENS
                     PVDWLVVLSACYFHDIVSLAKNHPQRHRSSILAAAETRRIFLRDFPDFPAEKLAGICH
                     AIEAHSFSAKIAPTTPEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDADDPFAN
                     RRPLNDKQFALDHFKTKLLKLPLTMQTERGKHLAQRNADFLVSYMAKLSAELKGDYET
                     RDDAVIQMFATYQ"
     gene            1164..2594
                     /locus_tag="OQP62_003387"
     CDS             1164..2594
                     /locus_tag="OQP62_003387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HCS1722842.1"
                     /translation="MQENISVTHARNLIADDAGSEIQAMLSQLLEIYDVKTLVAHLNG
                     LGEQHWSPAIFKRVMMNAAWHRLSDNELSCLKTELPTPPAHHPHYAFRFIDLFAGIGG
                     IRRGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIRDITLSHREGVSDDE
                     AAEHIRQHIPQHDVLLAGFPCQPFSLAGVSKKNALGRAHGFACETQGTLFFDVVRIID
                     ARRPALFVLENVKNLKSHDQGNTFRIIMQTLDELGYDVADAADNGPDDPKIIDGQHFL
                     PQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWK
                     YLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEILIDRGWDMAKGEVN
                     FDDAGNQQHRPRRLTPRECARLMGFEAPQTYQFRIPVSDTQAYRQFGNSVVVPVFAAV
                     AKLLEPKIHQAVTLRQRETADGGRSR"
     gene            2575..3045
                     /locus_tag="OQP62_003388"
     CDS             2575..3045
                     /locus_tag="OQP62_003388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="very short patch repair endonuclease"
                     /protein_id="HCS1722843.1"
                     /translation="MADVHDKATRSKNMRAIATRDTAIEKRLAGLLSAQGITFHTQDT
                     TLPGKPDFVVNDYDCVIFTHGCFWHHHHCYLFKVPATRTAFWLEKIGKNVERDERDIQ
                     RLQALGWRVLIVWECALRGRAKLSDAALAERLEEWICGGGASAQIDTQGIHLLA"
     gene            complement(3034..3954)
                     /gene="yedA"
                     /locus_tag="OQP62_003389"
     CDS             complement(3034..3954)
                     /gene="yedA"
                     /locus_tag="OQP62_003389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="drug/metabolite exporter YedA"
                     /protein_id="HCS1722844.1"
                     /translation="MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRF
                     LSAGMLLMAFLLLRGEKLPPLRQTINAALIGLLLLAVGNGLVTVAEHQNVPSGIAAVV
                     VATVPLFTLCFSYFFGIKTRKLEWVGIAIGLAGIILLNSGGNLSGNPWGAILILIGSM
                     SWAFGSVYGSRIALPVGMMAGAIEMLAAGVVLLCAAFLSGEKLATLPGLSGFMAVGYL
                     ALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGERLSPVEWAALGVI
                     VFAVVLVTLGKYLFPARAVITPCKTEDSRQ"
     gene            4124..5041
                     /locus_tag="OQP62_003390"
                     /pseudo
     CDS             4124..5041
                     /locus_tag="OQP62_003390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310723.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
     gene            5118..5303
                     /locus_tag="OQP62_003391"
     CDS             5118..5303
                     /locus_tag="OQP62_003391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YodC family protein"
                     /protein_id="HCS1722845.1"
                     /translation="MVFSVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGFGVKREAFH
                     ENELVPGKERRVRDEAR"
     gene            5468..7171
                     /gene="yedQ"
                     /locus_tag="OQP62_003392"
     CDS             5468..7171
                     /gene="yedQ"
                     /locus_tag="OQP62_003392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis regulator YedQ"
                     /protein_id="HCS1722846.1"
                     /translation="MPHETLLDNQGWFKKLARRFGPGHVVNTCFLIVMLFSTLLTWRE
                     VMILKDAYVASQRNHLGSVANVLDRQLQFNMDRLIFLRNGMHEALVAPLAFSALQSAV
                     TQFEQRRVRHFWQLELDKRRTLPLYGVSDQFVARTTLLSRESRDLANELTATLELGYL
                     ARSSAMLTLETMYVSRSGFYLSTLPTAYGSDIVSRYYQYVTQPWFIEQSQRRNPQRGV
                     RWFTSAQPYVADEQKKVTASLPLDHDNYWYGVLAMDIPVASLQQFLRDAAEKDIEGEY
                     QLYDNHLRLLTDSAPEQQTENTLNDRERALLAREIEKDTLGGLRLGTHYVSWERLDHF
                     DGVLLRVHTLREGIQGNFGSISIALTLLWGLFTAMLLISWGVIRHMVKNMFVLQNSPQ
                     WQAWHDPLTRLYNRGALFEKASRLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQAGD
                     RVLSHAAGLIGSTIRAHDIAGRVGGEEFCIVLPGATKAQALQIAERIRQRINDKEILV
                     TKSTTLRISASMGISSAEEYGDYDFEQLQSLADKRLYYAKQSGRNRICASDATQEREK
                     K"
     gene            complement(7150..7965)
                     /locus_tag="OQP62_003393"
     CDS             complement(7150..7965)
                     /locus_tag="OQP62_003393"
                     /EC_number="3.1.3.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate phosphatase-related
                     protein"
                     /protein_id="HCS1722847.1"
                     /translation="MLSIHDPLLIFTDLDGTLLNSHTFEWQPAAPWLTRLHESGVPVI
                     LCSSKTAAEMLQLQTTLNLQGLPLIAENGAVIQLDVHWEDHPNYPRLIAGISHNEIRL
                     VLHKLREKEQFKFTTFDDVDDQVISEWTGLNRAQSALTRLHEASVSLIWRDSDERMAQ
                     FVARLNDLGLQFVHGARFWHVLDASAGKDQAANWLIEAYRRQWRARPLTLGLGDGPND
                     APLLDVMDYAVVVKGLNREGVHLRNDDPQRVYRSQNEGPDGWREGMDYFFSRS"
     gene            complement(8275..8502)
                     /gene="yodD"
                     /locus_tag="OQP62_003394"
     CDS             complement(8275..8502)
                     /gene="yodD"
                     /locus_tag="OQP62_003394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YodD family peroxide/acid resistance protein"
                     /protein_id="HCS1722848.1"
                     /translation="MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQEDPERV
                     SVDGREYHTWHELAEAFELDIHDFSVTEVNR"
     gene            8631..8825
                     /gene="dsrB"
                     /locus_tag="OQP62_003395"
     CDS             8631..8825
                     /gene="dsrB"
                     /locus_tag="OQP62_003395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001736680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein DsrB"
                     /protein_id="HCS1722849.1"
                     /translation="MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGI
                     WFFNESGHQDGIFVEKAEQD"
     gene            complement(8864..>8945)
                     /gene="rcsA"
                     /locus_tag="OQP62_003396"
     CDS             complement(8864..>8945)
                     /gene="rcsA"
                     /locus_tag="OQP62_003396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310717.1"
                     /note="with RcsB is a positive regulator of capsular
                     polysaccharide synthesis genes; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcriptional regulator RcsA"
                     /protein_id="HCS1722850.1"
                     /translation="THNKQVIYHVVRLTDNVTNGIFANMR"
BASE COUNT         2142 a         2269 c         2483 g         2051 t
ORIGIN      
        1 agtttgagta ccagggagga caacgccacc cgtagcatgg gcggtaaatt agcgttatgg
       61 gttttttata ccttttgcgg ctacttcatc tgggcgatgg cgcgttgcgt gtggctgatg
      121 tccgccatac aaaccgagcc ggttctcggc ccaatcagca ctcctggcag cgcaacggaa
      181 aaatggctta acgcgctttc gctgggcgtc gtctggctta ttctggggag tattgcctgg
      241 tacacccggc ctcgcaaaaa cagggggtat cccgccgaca ctcagccaga aacgcgcaag
      301 cacgcaagga tgtaaagtgg tggcggatat gtcaggatag cgaaccctgt gctcaggcat
      361 gtaataaaaa tggtctgcta taaagagagg gcgtatggac tcaggatact ggcaatcgca
      421 gtttgaagac tggctacgtc accaccacca ggaacaggat gccgcccatg acatcttcca
      481 ttttcgtcgt gtttgggcaa ccgcgcaaac gctcggggaa aacagtcctg tcgactggct
      541 ggtggtgcta tcggcatgtt atttccatga catcgtcagc ctggcgaaaa atcatccgca
      601 gcggcatcgt tcttccattc tggcggcggc agaaacccgg cgtatttttc tgcgggattt
      661 tcctgacttt ccggcagaaa aactggcggg catttgtcat gctatcgaag cgcatagctt
      721 cagcgcaaaa attgcgccta ccacgccaga ggcaaaaatc gtacaggatg cagacaggct
      781 ggaggcgttg ggcgccattg gtctggcgcg ggtcttcgcg gtctccggcg cgctgggcgt
      841 cgcgctgttt gatgccgacg atccctttgc caacagacgg cctcttaacg ataagcaatt
      901 cgcgctcgac cattttaaaa ccaaactgct gaaactgccg ctgacgatgc agaccgaacg
      961 gggcaagcac ctggcgcagc gtaatgcgga ttttctggtg tcgtacatgg cgaaactgag
     1021 cgctgagctg aaaggcgact atgaaacacg ggatgatgcg gtcatccaga tgtttgctac
     1081 gtatcagtaa cccctgccgc tgaaacgtaa accgcgtcat tttatgttag tctgtcggca
     1141 attatttttg gccggttaaa tgtatgcagg aaaatatttc agtaacacac gcccggaacc
     1201 tcatcgccga cgacgccgga agcgagatcc aggcgatgct gagtcaattg ctggaaatct
     1261 acgatgttaa aacgctggtg gcgcacctta acggcctggg cgaacagcac tggagcccgg
     1321 ccatcttcaa gcgcgtaatg atgaacgcgg catggcatcg tttgagcgac aatgaactca
     1381 gctgtcttaa aacagagttg ccgacgccgc cagcgcatca tccacattac gcctttcgtt
     1441 ttatcgatct cttcgcgggc atcggcggca ttcgccgcgg atttgaagcg ataggcggac
     1501 agtgcgtgtt taccagcgaa tggaataagc acgcggtacg gacatataaa gcgaactatt
     1561 tttgcgatcc gctgcaacat cgctttaatg aagatatccg cgatatcaca ttgagccacc
     1621 gggaaggggt cagcgatgat gaggcggcgg aacacattcg ccagcatatt ccgcaacatg
     1681 atgtcctgct ggcgggcttt ccctgtcagc cattttctct ggcgggcgtt tccaagaaaa
     1741 atgcgctggg ccgcgcccac ggctttgcct gcgagactca ggggacgtta ttttttgatg
     1801 tcgtaagaat tatcgacgcc cgccgccccg cgctgtttgt gctggaaaac gtgaaaaacc
     1861 ttaaaagtca cgaccagggc aacaccttcc gcattattat gcaaacgctc gatgaactgg
     1921 gatatgacgt ggcggatgcc gctgacaatg gcccggacga tccgaaaatt atcgacgggc
     1981 agcactttct tcctcagcat cgggaacgta ttgtgttggt gggattccgt cgcgatttaa
     2041 acctgaaaac cgattttacg ttacgcaata tcgcccgttg ttatccaccg cgccgtccga
     2101 cgctggcaga actgctggag cccgtcgtcg aagccaaata tatcctgacg ccggtgctgt
     2161 ggaaatattt atatcgctac gcgaaaaagc accaggcgcg gggaaacggt tttggctatg
     2221 gcatggttta tcctgacaat ccggaaagtg tggcgcgcac gttatctgct cgctactaca
     2281 aagatggcgc cgaaattctg atcgatcgtg gttgggatat ggcgaaaggc gaagtgaatt
     2341 tcgacgatgc tggcaaccaa caacatcgtc cccgccgact cacgccgaga gagtgcgcgc
     2401 gtttaatggg atttgaggcg ccgcaaacgt accagttcag gatacctgtc tcggatacgc
     2461 aggcctatcg ccagtttggc aactccgtgg tggtgccggt atttgccgcg gtagcaaagc
     2521 tgctggaacc caaaattcac caggcggtga cgctgcgtca gagagagacg gcagatggcg
     2581 gacgttcacg ataaagccac gcgcagtaaa aatatgcgcg cgatagcgac ccgcgatacg
     2641 gcgattgaaa aacgccttgc tggcctgtta agcgcgcagg ggattacgtt tcatactcag
     2701 gacacgacat taccgggcaa gccggacttt gtggtgaatg actatgattg tgtgattttt
     2761 actcacggct gcttttggca tcatcaccac tgttatctat tcaaagtacc ggccacgcga
     2821 acggctttct ggctggaaaa aatcggtaag aacgttgagc gcgatgagcg tgatattcag
     2881 cgtttacagg cgcttggctg gcgggtactg atcgtctggg agtgcgcctt gcgcgggcga
     2941 gcgaaattga gcgacgcggc gttggcggag cgcctggaag agtggatctg cggcggcggc
     3001 gccagcgcgc agatcgacac ccaggggatt catctactgg cgtgaatctt ccgttttaca
     3061 cggtgtgatc accgccctgg cgggaaacag gtacttaccc agagtcacta gcactacggc
     3121 aaacacaatc acgcccagcg cggcccattc aacgggcgat aacctctcac cgcctaggcc
     3181 agtgccaagc aacacggcga caaccggatt cacataggcg tagctggtcg ccagcgccgg
     3241 actgacgttg cgaatcaggt acatataggc attaatggcg ataatagaac cgaataacgc
     3301 caggtagccg acggccataa accccgataa accaggcagc gtggcgagct tttcgccgga
     3361 aagaaacgcc gcgcaaagca ataccacgcc cgccgccagc atttcaatcg cgcccgccat
     3421 catgcccaca ggcagggcga tgcgcgagcc gtaaacggaa ccaaatgccc agctcatcga
     3481 acctatcagg atcaaaatcg cgccccacgg attgccgctt aaattaccgc cgctgttcag
     3541 cagaataatc ccggcaagtc caatggcaat ccccacccat tctaatttgc gcgttttaat
     3601 accaaaaaag tagctaaagc acagcgtaaa tagcgggaca gtggcgacca cgacggcagc
     3661 aatgcccgat ggcacgtttt gatgctccgc caccgtcacc agaccgttac ccaccgccag
     3721 cagcagtagg ccaatcagcg cggcgttgat ggtctggcgc agcggcggaa gtttttcgcc
     3781 gcgcaacagc aaaaacgcca tgagcaacat ccccgccgag agaaaacgta cgcctgccat
     3841 cattagcggc ggccagcttt caacgcctat gcggataaca aaataggtag acccccaaat
     3901 gatgtacaag gcaaaaagcg cgccaaaaag aggtaataac tgccggaaac gcataatcac
     3961 tcacggtgaa ataaaaaggg tgaatatagt aaacgtcaaa attattatgc tggcgagcat
     4021 tataattgtc cttttggaat aaaaaggcgt tgacccgcgc cgccggtttc ggcattgcgc
     4081 gttttgctac atacttaacg tcttagaaga aaagaccgag gaaatcattt tggcaggaag
     4141 tagcttactg acattactcg acgatatcgc cacgctgctg gacgatattt cggtaatggg
     4201 caaattggcc gcgaaaaaaa ccgcaggcgt actgggggac gacctgtcgc tcaatgcgca
     4261 gcaggtgacc ggcgttcgcg ctaatcgcga gctgccagtg gtatggagcg tggcgaaagg
     4321 atcattaatc aacaaggtta ttctggtgcc gttggcgctg ttgataagcg catttatccc
     4381 gtgagccatt acgcctttat taatgttagg cggcgcgttt ctctgctttg aaggggtaga
     4441 aaaagtcctg catacctttg aggcgcgaaa acacaaagaa gacctggcgg agcggcaaaa
     4501 acgtcttgag gcgctggcta cgcaagatcc tttggccttt gaaaaagata aagtaaaagg
     4561 ggcggtccgt accgatttca ttctttccgc tgaaattgtg gcaattaccc tggggattgt
     4621 cgcgcaggca ccgctgctta atcaggtgtt ggtgctggcg gggattgcgt tggttgtgac
     4681 cattggcgtg tatggcctgg tgggtattat tgtcaaactg gatgatatgg ggtactggct
     4741 ggcggaaaag cgtagcgtgc tggcgcaggg cgtcggtaaa ggattactga ttatcgcgcc
     4801 ctggttaatg aaagcattat ccattgtcgg tacgctggcg atgtttctgg ttggcggcgg
     4861 aattgtcgta cacggtattg cgccgctaca ccatgccatt gaacattttg cgcagcagca
     4921 gggggctttc atggcgcata cgatccctgc ggggctgaat ctggtgctcg gctttattat
     4981 cggcgccatt gtggtggcgc tggtgaaagg tgtggcgaaa attcgcggtg tttcgcactg
     5041 attttctaca atgaattatg caaaattgtc catcctcgtc taaggtgaaa acgtttcatc
     5101 tgatacagga ggcaggtatg gtcttttctg tcagtgagga agttaccgtg aaagagggtg
     5161 gaccccggat gatcgtcacc ggttattcca gcggaatggt agagtgtcgc tggtatgatg
     5221 gttttggcgt aaagcgggag gcattccatg agaatgagct cgtgccaggc aaggaaaggc
     5281 gcgtgcggga tgaagcccga tgacaaaacg cccggttaat gccgggcgtt ttgctgtgga
     5341 gaaaaagagt cgtcgcgctg cgacatgctg ctacctggtt atgccaggat tgagtggtat
     5401 cccttgatga ggtctggcta ccgtaagcca tcagggggcg ttgtatcaat aaccaggagt
     5461 taccagggtg ccgcacgaaa cactgttaga caatcaaggc tggtttaaaa agctggcgcg
     5521 gcgttttggt cccggtcatg tcgtcaacac ctgttttctg atcgtgatgc tgttctcgac
     5581 gctacttacc tggcgggaag ttatgatact gaaagacgcg tatgtcgcca gtcagcgcaa
     5641 tcatctgggg agcgtcgcga atgtccttga ccgccaactg caattcaaca tggacaggtt
     5701 gatcttttta cgcaacggta tgcatgaagc gctggtggcg ccgctggctt tttccgcatt
     5761 gcaaagcgcg gtgacgcagt ttgagcaacg acgcgtcaga catttctggc aactggagtt
     5821 ggataaacgg cggacattgc cgttatatgg cgtttccgat caatttgtcg cccggacgac
     5881 gcttctttcg cgggagagtc gtgacctggc aaatgaatta accgccacgc tggagttagg
     5941 gtatctggcg cgctcatccg ccatgctgac gctggagacg atgtatgttt ctcgctcagg
     6001 gttttacctc tcaactctcc ctacggcgta cggtagcgat attgtttccc gttactatca
     6061 gtacgtgacc cagccctggt ttatcgagca aagccaacgg cgtaatccac agcgcggcgt
     6121 gcggtggttt acctccgcac agccctatgt tgctgacgag cagaaaaaag tgacagccag
     6181 tctaccgctg gatcacgata attactggta tggcgtactg gcaatggata ttcccgtcgc
     6241 gtcattacag cagtttctgc gcgatgcggc cgaaaaggat attgaagggg aatatcagct
     6301 atacgataac catctccgtt tgttgacgga ctccgcgccg gaacaacaaa ccgagaatac
     6361 gttaaatgac cgtgagcgcg ccttactggc gcgtgaaata gaaaaagata ccctgggcgg
     6421 gctgcgttta ggaacgcatt atgtaagctg ggagcggctg gatcattttg atggcgtcct
     6481 gctgcgcgtg catacattac gtgaaggtat acaagggaat tttggcagta ttagtatcgc
     6541 gctgacgctg ttatgggggc tttttacggc gatgctgttg atctcctggg gcgttattcg
     6601 acatatggtc aaaaatatgt ttgttctgca aaattcgccg caatggcagg catggcacga
     6661 tccgctgacc cggctatata accgtggcgc gctgtttgaa aaagcgtcca ggctggcaaa
     6721 gcgctatcgg gaagcccgcc agccattttc tgtgatacag ctggatttag attattttaa
     6781 aagcgttaac gatcgctttg gccatcaggc aggcgatcgc gtgttgtccc atgccgctgg
     6841 gctcattggc agcaccattc gagcgcacga catcgccgga cgggtagggg gcgaagagtt
     6901 ttgtatcgtg ctgcccggcg cgacgaaagc gcaggcgctg cagattgccg aacgcatacg
     6961 ccagcgcatt aatgacaaag agattctggt gacgaaaagc acgacgcttc gtatcagcgc
     7021 gtcaatgggg atcagtagcg cggaggaata cggcgactat gattttgagc agttgcagtc
     7081 gctggccgac aaacggcttt attacgccaa acagtccgga cgtaaccgta tttgcgccag
     7141 cgacgcgact caggagcggg aaaagaaata gtccattcct tcgcgccagc catccggccc
     7201 ttcgttctgg ctacggtaga cgcgctgagg atcgtcgtta cgcaaatgta caccctcccg
     7261 gtttagccct ttaacgacaa ccgcataatc catcacatcc agtaagggcg catcattggg
     7321 gccgtctcct agccccaacg tcagaggacg cgcgcgccac tgccgacgat atgcttcaat
     7381 tagccagttg gcagcctgat ctttaccggc ggaggcgtcc agcacatgcc agaaacgggc
     7441 gccatggaca aattgcagtc ccaggtcatt taaacgggcg acaaactgcg ccatgcgttc
     7501 atcgctatcg cgccagatca gcgacaccga cgcttcatgc agacgggtta gggcagactg
     7561 tgcccggttt aggcccgtcc attcgcttat cacctgatcg tcaacgtcat caaacgtggt
     7621 gaacttaaac tgttcctttt cacgcaactt atgcaggacg aggcggattt cgttgtgaga
     7681 aataccggct atcaggcggg gatagttggg atggtcttcc caatgaacgt ccagttggat
     7741 caccgcgccg ttttccgcaa tcagcggcag tccctgtaga tttaacgtcg tctggagctg
     7801 gagcatttca gccgcggttt tactgctaca gaggatcaca ggcacgccgc tttcatgcag
     7861 gcgtgtaagc cagggggccg cgggctgcca ctcaaaagtg tggctgttca gcaatgtgcc
     7921 gtccagatcg gtaaaaatca gcaaggggtc atggattgag agcatttttt cctcattttc
     7981 cgttgcaacg gcgggcttat ttccaggaaa aatcctaaag cacatccgaa agaagtcgaa
     8041 cgctaactgg aaccgatccc gtcgcttcca ggcagcacat gcgttgtcac acttttgcta
     8101 ccgaactatt agcgcgctta atcattcatg taaaaaatat ttacttgtca tgcaaaaaaa
     8161 ttgcagataa agtaaatctc acatcagatt tcctggtgta acgaattttc aagtgcttct
     8221 tgcataagca agtttgatcc cgacccgtag ggccgggatt tttttcggcc atttttaacg
     8281 gtttacttct gttacactaa aatcatgaat atccagctcg aatgcttcag ctaattcatg
     8341 ccatgtatga tattcccgtc cgtctacgct cacccgctca ggatcttcct ggctacggtg
     8401 aacctcgctt tcgctgattt cattgatggc cgccagtagc gcatctacat cgacgctcac
     8461 ttcgcgcttg gccgtatcac tgtactcttt tgccgttttc atcttcacta cctcacgggt
     8521 tcctgacagc ctaagtatag accgttgaga aaaccagcaa acacgccggc aaggcgctgt
     8581 cagacgcaga aaattgttct acactggcac aaagcgacag gaggaaaatg atgaaggtga
     8641 atgatcgggt aaccgttaaa acggacggcg gtccccgccg accgggcgtg gtactggcag
     8701 tggaagaatt tagtgaaggc acaatgtacc tggtttcgct ggaggattac ccgctcggca
     8761 tctggttctt caatgagtca ggtcaccagg atggtatttt tgtcgagaag gcggagcagg
     8821 actaattgag ccggactgga ggtacattgc cagtccggat gtctcagcgc atgttagcaa
     8881 aaatgccgtt agtgacgtta tctgtcagcc gcactacgtg atagatcact tgtttattat
     8941 gcgtt
//
LOCUS       DAJVSD010000187         8891 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.187, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000187 DAJVSD010000000
VERSION     DAJVSD010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8891)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8891)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8891
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.187"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(125..1750)
                     /gene="prpR"
                     /locus_tag="OQP62_003397"
     CDS             complement(125..1750)
                     /gene="prpR"
                     /locus_tag="OQP62_003397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionate catabolism operon regulatory protein
                     PrpR"
                     /protein_id="HCS1722851.1"
                     /translation="MTTAHSAPRDNSDKPVIWTVSVTRLFELFRDISLEFDHLATITP
                     IQLGFEKAVTYIRKKLATERCDAIIAAGSNGAYLKSRLSIPVILIKPSGFDVLQALAK
                     AGKLTSSIGIVTYQETIPTLLAFQKTFHLCLEQRSYVTEEDARGQINELKANGIEAVV
                     GAGLITDLAEEAGMTAIFIYSAATVRQAFHDALDMTRLTRRQRVDYPSGKGLQTRYEL
                     GDIRGQSPQMEQLRQTITLYARSRAAVLIQGETGTGKELAAQAIHQTFFHRQPHRQNK
                     PSPPFVAVNCGAITESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM
                     PLPLQTRLLRVLEEKAVTRVGGHQPIPVDVRVISATHCDLDREIMQGRFRPDLFYRLS
                     ILRLTLPPLRERQADILPLAESFLKQSLAAMEIPFTESIRHGLTQCQPLLLAWGWPGN
                     IRELRNMMERLALFLSVDPAPTLDRQFMRQLLPELMVNTAELTPSTVDAHTLQDVLAR
                     FKGDKTAAARYLGISRTTLWRRLKAGAKDQSGN"
     gene            2016..2903
                     /gene="prpB"
                     /locus_tag="OQP62_003398"
     CDS             2016..2903
                     /gene="prpB"
                     /locus_tag="OQP62_003398"
                     /EC_number="4.1.3.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylisocitrate lyase"
                     /protein_id="HCS1722852.1"
                     /translation="MSLHSPGQAFRAALAKENPLQIVGAINANHALLAQRAGYQAIYL
                     SGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCPLPLLVDADIGFGSSAFNVARTVK
                     SIAKAGAAALHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDARTDPNFVIMARTD
                     ALAVEGLEAALDRAQAYVDAGADMLFPEAITELSMYRQFADVAQVPILANITEFGATP
                     LFTTDELRSAHVAMALYPLSAFRAMNRAAEKVYTVLRQEGTQKNVIDIMQTRNELYES
                     INYYQFEEKLDALYRNKKS"
     gene            3026..4195
                     /gene="prpC"
                     /locus_tag="OQP62_003399"
     CDS             3026..4195
                     /gene="prpC"
                     /locus_tag="OQP62_003399"
                     /EC_number="2.3.3.16"
                     /EC_number="2.3.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylcitrate synthase"
                     /protein_id="HCS1722853.1"
                     /translation="MTDTTILQNNTHVIKPKKSVALSGVPAGNTALCTVGKSGNDLHY
                     RGYDILDLAEHCEFEEVAHLLIHGKLPTRDELNAYKSKLKALRGLPANVRTVLEALPA
                     ASHPMDVMRTGVSALGCTLPEKEGHTVSGARDIADKLLASLSSILLYWYHYSHNGERI
                     QPETDDDSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHEFNASTFTSRVIAGTGSD
                     VYSAIIGAIGALRGPKHGGANEVSLEIQQRYETPDEAEADIRKRVENKEVVIGFGHPV
                     YTIADPRHQVIKRVAKQLSEEGGSLKMYHIADRLETVMWETKKMFPNLDWFSAVSYNM
                     MGVPTEMFTPLFVIARVTGWAAHIIEQRQDNKIIRPSANYTGPEDRVFVPIEKRC"
     gene            4233..5684
                     /locus_tag="OQP62_003400"
     CDS             4233..5684
                     /locus_tag="OQP62_003400"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-methylcitrate
                     dehydratase/aconitate hydratase"
                     /protein_id="HCS1722854.1"
                     /translation="MSAHISNVRPDFDREIVDIVDYVMNYEITSKVAYDTAHYCLLDT
                     LGCGLEALEYPACKKLLGPIVPGTVVPNGARVPGTQFQLDPVQAAFNISAMIRWLDFN
                     DTWLAAEWGHPSDNLGGILATADWLSRNAVAAGKAPLTMKQVLSGMIKAHEIQGCIAL
                     ENAFNRVGLDHVLLVKVASTAVVAEMLGLTRDEILNAVSLAWVDGQSLRTYRHAPNTG
                     TRKSWAAGDATSRAVRLALMAKTGEMGYPSALTAKTWGFYDVSFKGETFRFQRPYGSY
                     VMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACLRIIDK
                     KGPLNNPADRDHCIQYMVAVPLLFGRLTAADYEDEVAQDKRIDALREKIVCYEDPAFT
                     ADYHDPEKRAIGNAITVEFTDGSRFGEVVVEYPIGHARRRADGIPKLIEKFKINLARQ
                     FPTRQQQRILDVSLDRARLEQMPVNEYLDLYII"
     gene            5725..7611
                     /gene="prpE"
                     /locus_tag="OQP62_003401"
     CDS             5725..7611
                     /gene="prpE"
                     /locus_tag="OQP62_003401"
                     /EC_number="6.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionate--CoA ligase"
                     /protein_id="HCS1722855.1"
                     /translation="MSFSEFYQRSINEPEAFWAEQARRIDWRQPFTQTLDHSRPPFAR
                     WFCGGTTNLCHNAVDRWRDKQPEALALIAVSSETDEERTFTFSQLHDEVNAVAAMLLS
                     LGVQRGDRVLVYMPMIAEAQITLLACARIGAIHSVVFGGFASHSVAARIDDARPALIV
                     SADAGARGGKILPYKKLLDDAIAQAQHQPKHVLLVDRGLAKMSWVDGRDLDFSTLRQQ
                     YLGASVPVAWLESNETSCILYTSGTTGKPKGVQRDVGGYAVALATSMDTIFGGKAGGV
                     FFCASDIGWVVGHSYIVYAPLLAGMATIVYEGLPTYPDCGVWWKIVEKYQVNRMFSAP
                     TAIRVLKKFPTAQIRNHDLSSLEALYLAGEPLDEPTASWVTETLGVPVIDNYWQTESG
                     WPIMALARALDDRPSRLGSPGVPMYGYNVQLLNEVTGEPCGINEKGMLVIEGPLPPGC
                     IQTIWGDDARFVKTYWSLFNRQVYATFDWGIRDAEGYYFILGRTDDVINIAGHRLGTR
                     EIEESISGYPNVAEVAVVGIKDALKGQVAVAFVIPKQSDTLADREAARDEEKAIMALV
                     DNQIGHFGRPAHVWFVSQLPKTRSGKMLRRTIQAICEGRDPGDLTTIDDPASLQQIRQ
                     AIEE"
     gene            complement(7715..8689)
                     /gene="hemB"
                     /locus_tag="OQP62_003402"
     CDS             complement(7715..8689)
                     /gene="hemB"
                     /locus_tag="OQP62_003402"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HCS1722856.1"
                     /translation="MTDLIHRPRRLRKSAALRAMFEETTLSLNDLVLPIFVEEELDDY
                     KAIDAMPGVMRIPEKQLAREIERIANAGIRSVMTFGISHHTDDTGSDTWKEDGLVARM
                     SRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHGVDNDATLANLGKQAVIAAAAGAD
                     FIAPSAAMDGQVQAIRQALDAAGFTDTAIMSYSTKFASSFYGPFREAAGTALKGDRKT
                     YQMNPMNRREAIRESLLDEAQGADCLMVKPAGAYLDVLREIRERTELPLGAYQVSGEY
                     AMIKFAAMAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLAEKNILR"
BASE COUNT         1964 a         2407 c         2544 g         1976 t
ORIGIN      
        1 cataaaaata cccgcctggg tttccggcgg gtatttttat tcctggcaac cggcatccgt
       61 tttgccggat gacggcctgc agtaaacgta gcgccatcag gcattcagga cgctgtcatt
      121 tgtcttaatt acccgactgg tctttggcac ctgcttttaa acgacgccac agagtggtgc
      181 ggctaatccc cagataacgc gccgccgcgg tcttatcgcc cttaaagcgc gccagtacat
      241 cctgtaacgt gtgcgcatcc acggttgaag gcgtcagctc tgctgtgttc accataagct
      301 caggtaataa ctgccgcata aattgcctgt ccagcgttgg tgcgggatcg acgcttaaaa
      361 aaagcgccag gcgctccatc atattacgca gttcgcgaat attaccgggc cagccccagg
      421 ccagcaaaag cggctgacac tgtgtcaatc catgacgtat cgattcggta aacggaattt
      481 ccatcgccgc cagcgactgt tttaaaaagc tttccgccag cggcaaaata tcagcctgcc
      541 gctcgcgcaa aggaggaagc gtcagacgca gaatactcag gcgataaaag agatcggggc
      601 gaaaacgtcc ttgcattatc tcccgatcca gatcgcaatg cgtagcgctg atcacccgga
      661 catccaccgg gatcggttgg tgtccgccga cgcgagtgac ggctttttcc tccagtacgc
      721 gcaagagtcg ggtttgtaac ggcaagggca tttcgccgat ttcatccaga aacagcgtgc
      781 cgccgtgtgc gatttcaaac agccccgccc ggcctcctcg tcgtgaaccg gtaaacgcgc
      841 cctcttcata accaaacagt tccgcctcca gcaatgactc ggtaatcgcg ccgcaattga
      901 cggcgacaaa gggaggggat ggcttattct gacggtgagg ctggcggtga aaaaacgtct
      961 ggtgaatcgc ctgcgccgcc agctcttttc cggtccctgt ttccccctga atcagcactg
     1021 ccgcacggga gcgggcatag agcgtaatcg tctggcggag ctgctccatt tgcggcgact
     1081 ggccgcgtat atcgcccagt tcataccggg tttgtaatcc cttgccggat gggtaatcca
     1141 cgcgctggcg ccgtgtcaga cgggtcatat ccagcgcatc atgaaaagcc tgacgaacgg
     1201 tcgccgcgga ataaataaag atggcggtca tacccgcttc ttccgccaga tcggtaatta
     1261 atcccgcgcc gacgacggcc tcaataccgt tggccttaag ttcgttaatt tgcccgcgcg
     1321 cgtcctcttc ggtgacatag cttcgctgtt caagacagag gtgaaacgtt ttctgaaagg
     1381 caagtaaagt cggaatggtc tcctgatagg tcacgatacc gatagacgag gtgagctttc
     1441 ccgctttcgc cagcgcctgt aatacgtcga atccgctggg cttgatgagg atcaccggta
     1501 ttgacaggcg actttttaaa taggccccgt tcgaacccgc cgcgataatc gcgtcgcagc
     1561 gctcggtcgc cagttttttg cgaatgtagg tcaccgcctt ttcaaagccg agttgaatag
     1621 gcgtgatggt cgccagatga tcgaattcta ggctgatatc ccgaaacagt tcgaatagac
     1681 gcgttacgga gaccgtccag atcaccggtt tatcgctatt atcgcgcgga gcgctgtgag
     1741 cagtcgtcat cgcagtaggt tcatctttaa ggggcgattt tttgttttaa acgtgtttca
     1801 taaatgttgc aatgaaacgg agcgattcgt ttcatgaaac gttagctgac acgtttttct
     1861 tttcccttaa tcgcgcttat tcataacagg aatgactgta attacctgtt tttaaatctc
     1921 attgtattta attttctcgc tgcctctttg cctggcatag cctttgcttt ggtgaataca
     1981 tcttgaataa caatttacta acatgaggac gaattatgtc tttacattcg ccggggcagg
     2041 catttcgcgc cgcgctcgct aaagagaatc cattacaaat tgtcggcgct attaatgcca
     2101 accatgctct gttggcccaa cgggccgggt atcaggctat ctatctttct ggcggcggcg
     2161 tagcggcggg ctcgctcgga ctgccggatc tggggatttc gacgctggat gatgtgttaa
     2221 ccgatatccg gcgcatcacg gatgtttgcc cgctgccgct gttggtggat gcggatattg
     2281 gctttggctc ctccgccttt aatgtcgcgc ggacggtaaa gtccatagcc aaagcgggcg
     2341 ccgccgcgct gcatattgaa gaccaggttg gcgctaagcg ctgtggacac cgtccaaaca
     2401 aagcgatcgt ctcgaaagag gagatggtag acagaattcg ggcggcagtg gatgcgcgca
     2461 ccgatccgaa ctttgtgatc atggcgcgta ccgatgcgct ggcggtggaa gggctggagg
     2521 cggctctcga tcgcgcgcag gcttacgtgg atgcgggggc tgacatgctg ttcccggagg
     2581 cgatcaccga actgtcgatg taccgccagt tcgccgacgt ggcgcaggtg ccgatcctcg
     2641 ccaacatcac tgagtttggc gcgacgccgc tgtttacgac cgacgagttg cgcagcgcac
     2701 acgtggcgat ggcgctctat ccgctgtcgg cgtttcgcgc catgaaccgc gccgcagaaa
     2761 aagtctatac cgtgctgcgc caggaaggga cgcaaaagaa cgtgatcgac atcatgcaga
     2821 cccgcaacga gctgtacgaa agcatcaatt actaccagtt cgaagagaag ctggacgcgc
     2881 tgtacaggaa taaaaaatcg tagcctgtgg gcctgataag gcgaagccgc catcaggcaa
     2941 tgccggatgg cactacgttt atcccgccta cggtacggcc tacacgcctc aataccctac
     3001 acattacaat aatgacgagg acaatatgac agacacgacg atcctgcaaa acaacacgca
     3061 tgtcattaag cctaaaaaat cggtcgcgct ttccggcgta cctgccggaa ataccgctct
     3121 gtgtaccgtg ggaaaaagcg gtaacgatct gcactatcgc ggttacgaca ttctcgatct
     3181 ggcggagcac tgcgaatttg aagaagtcgc gcatttactg atccacggaa aattaccgac
     3241 ccgcgacgag ctgaacgcgt ataaaagcaa gttaaaagcg ctgcgcggat tacccgccaa
     3301 tgtccgtacc gttctggaag cgttaccggc ggcctcgcac ccgatggacg tgatgcgtac
     3361 cggcgtttcc gcgctgggct gcaccctgcc ggaaaaagag ggacataccg tctccggcgc
     3421 gcgcgatatt gccgataagc tgttggcttc gctcagctct atccttcttt actggtatca
     3481 ctacagccac aacggcgaac gtattcagcc ggaaaccgac gatgattcca tcggcggcca
     3541 tttcctgcat ctgctgcacg gtgaaaagcc aacccaaagc tgggaaaagg cgatgcatat
     3601 ttcgctggtg ctgtacgccg agcatgagtt caacgcctcg acgtttacca gccgggtaat
     3661 tgccgggacc ggctcggatg tctactccgc gattatcggc gcgattggcg cgctgcgcgg
     3721 cccgaaacac ggcggagcga atgaggtgtc gctggaaatt caacagcgtt atgaaacacc
     3781 ggacgaggca gaggcggata tccgtaaacg cgtggaaaac aaagaggtgg tgattggctt
     3841 tggacatccg gtttacacca tcgccgaccc gcgccaccag gtgatcaaac gggtggcgaa
     3901 acagctttca gaagaaggcg gctcgctgaa gatgtaccac atcgccgacc gtctggaaac
     3961 ggtgatgtgg gagaccaaaa agatgttccc gaatctcgac tggttttcgg cggtctccta
     4021 caacatgatg ggcgtcccta ccgaaatgtt caccccgctg tttgtcatcg cccgcgttac
     4081 cggctgggcg gcgcacatta ttgaacagcg tcaggacaac aaaattattc gtccttccgc
     4141 caattatacc ggcccggaag atcgcgtatt tgtgccgatc gaaaagcgtt gctaattaaa
     4201 acctctaaat ataaaaacag gagttgtacc ctatgtccgc acatatttcg aacgttcgcc
     4261 cagactttga ccgtgaaatc gttgatatcg ttgattacgt tatgaattac gagatcacct
     4321 caaaggtggc gtacgacact gcgcattact gcctgctcga cacgctcggc tgtggtctgg
     4381 aagcgctgga atacccggcc tgtaaaaaat tgcttgggcc aatcgtgcca ggcacggtgg
     4441 tgcccaacgg cgcacgcgtg ccgggcaccc agttccagct cgatccggta caggcagcct
     4501 ttaacattag cgcgatgatc cgctggctcg attttaacga tacctggctt gccgccgagt
     4561 ggggccatcc ttctgataac ctcggcggta ttctggcgac ggctgactgg ctgtcacgca
     4621 acgccgtcgc cgccggcaaa gcgccgctga ccatgaaaca ggtattgagc gggatgatca
     4681 aagcccatga aattcagggc tgcatcgcgc tggaaaacgc cttcaaccgt gtcgggcttg
     4741 accatgtgct gctggtcaaa gtggcctcga ccgcggtggt cgctgaaatg ctggggctga
     4801 cgcgcgatga gatcctcaac gcggtatcgc tggcgtgggt ggatgggcag tcgttgcgca
     4861 cttatcgtca tgcgccgaat accggtacgc gcaaatcctg ggcggcgggc gatgcgactt
     4921 cgcgcgcggt acgtctggcg ctgatggcga aaaccggcga gatgggctat ccctcggcgc
     4981 tcaccgccaa aacctggggc ttctacgacg tttcattcaa aggtgaaacg ttccgtttcc
     5041 agcgccctta cggctcctac gtgatggaaa acgtgctatt taaaatttct ttcccggcag
     5101 aattccactc gcaaaccgcc gtcgaagcgg cgatgacact gtatgagcag atgcaggccg
     5161 cgggcaaaac ggcagcggat atcgagaaag tgactatccg cacccacgaa gcctgtcttc
     5221 gcattatcga taaaaaaggc ccgctcaata acccggcgga ccgcgatcac tgtatccagt
     5281 atatggtcgc cgtgccgttg ctgttcggac ggttaaccgc ggcggattat gaagacgagg
     5341 tggcgcagga caagcgtatt gacgccctgc gcgagaaaat cgtgtgctat gaggacccgg
     5401 cttttaccgc cgactatcac gacccggaaa aacgtgctat cggcaatgcg atcaccgtgg
     5461 agtttactga tggctcacgc tttggcgagg ttgtcgtgga gtatccgatt ggtcatgcgc
     5521 gtcgccgcgc cgacggtatt ccgaagctta tcgaaaaatt taaaattaac ctggcgcgtc
     5581 agttcccgac tcgccagcag caacgcattc tggatgtctc cctggacaga gcccgcctgg
     5641 agcagatgcc ggttaacgaa tacctcgatt tatatatcat ctgagccagc cagcagtaag
     5701 gcgtaagttc aacaggagag cgtgatgtct tttagcgaat tttatcagcg ttccattaac
     5761 gaaccggagg cgttctgggc cgagcaggcc cggcgtatcg actggcgaca gccgtttacg
     5821 cagacgctgg atcatagccg tccaccgttt gcccgctggt tttgcggcgg caccactaac
     5881 ttatgtcata acgccgtcga ccgctggcgg gataaacagc cggaggcgct ggcgctgatt
     5941 gccgtctcat cagagaccga tgaagagcgc acatttacct tcagccagtt gcatgatgaa
     6001 gtcaacgctg tggccgctat gctgctgtcg ctgggcgtgc agcgtggcga tcgcgtattg
     6061 gtctatatgc cgatgattgc cgaagcgcag ataaccctgc tggcctgtgc gcgcattggc
     6121 gcgatccatt cggtggtctt tggcggtttt gcctcgcaca gcgtggcggc gcgcattgac
     6181 gatgccagac cggcgctgat tgtgtcggcg gatgccggag cgcgtggcgg taaaattctg
     6241 ccgtataaaa agctgcttga tgacgctatt gcgcaggcgc agcatcagcc gaaacacgtt
     6301 ctgctggtgg acagagggct ggcgaaaatg tcgtgggtgg atgggcgcga tctggatttt
     6361 tccacgttgc gccagcagta tctcggcgcg agcgtgccgg tggcgtggct ggaatccaat
     6421 gaaacctcgt gcattcttta cacctccggc actaccggca aaccgaaagg cgtccagcgc
     6481 gacgtcggcg gttatgcggt ggcgctggca acctcgatgg acaccatttt tggcggcaag
     6541 gcgggcggcg tattcttttg cgcatcggat atcggctggg tcgtcggcca ctcctatatc
     6601 gtttacgcgc cgctgctggc aggcatggcg actattgttt acgaaggact gccgacgtac
     6661 ccggactgcg gggtctggtg gaaaattgtc gagaaatacc aggttaaccg gatgttttcc
     6721 gccccgaccg cgattcgcgt gctgaaaaaa ttcccgacgg cgcaaatccg caatcacgat
     6781 ctctcctcgc tggaggcgct ttatctggcc ggtgagccgc tggacgagcc gacggccagt
     6841 tgggtgacgg agacgctggg cgtaccggtc atcgacaatt attggcagac ggagtccggc
     6901 tggccgatca tggcgctggc ccgcgcgctg gacgacaggc cgtcgcgtct gggaagtccc
     6961 ggggtgccga tgtacggtta taacgtccag ctactcaatg aagtcaccgg cgaaccctgc
     7021 ggcataaatg aaaaaggcat gctggtgatc gaagggccgc tgccgccggg ttgtattcag
     7081 actatttggg gcgacgatgc gcgttttgtg aagacttact ggtcgctgtt taaccgtcag
     7141 gtttatgcca ctttcgactg gggaatccgc gacgccgagg ggtattactt tattctgggc
     7201 cgtaccgatg atgtgattaa tattgcgggt catcggctgg ggacgcgaga aatagaagaa
     7261 agtatctccg gttacccgaa cgtagcggaa gtggcggtgg tggggataaa agacgctctg
     7321 aaagggcagg tggcggtggc gtttgtcatt ccgaagcaga gcgatacgct ggcggatcgc
     7381 gaggcggcgc gcgacgagga aaaagcgatt atggcgctgg tggataacca gatcggtcac
     7441 tttggtcgtc cggcgcatgt ctggtttgtt tcgcagctcc ccaaaacgcg ttccggaaag
     7501 atgcttcgcc gcacgatcca ggcgatctgc gaaggccgtg atccgggcga tctgacaacc
     7561 attgacgatc ccgcgtcgtt gcagcaaatt cgccaggcga tcgaggaata gccgtaagcc
     7621 ggataagccg cgtccggcaa cgggttagac tcagcgactg aatagtgggg tgtaaagtcg
     7681 ggaaagggcg gcagcgcgcc gccctgtaac agaattaacg cagaatattt ttctcagcca
     7741 gatccagtgc gaagtagctg aaaatcaaat cggcgccggc gcgtttaatc gagcccagac
     7801 tttccagcac gaccttttct tcatcgatgg cgccagccat agcagcaaat ttaatcatgg
     7861 cgtattcacc gctcacctgg taagcgccaa gcggcaactc tgtgcgttcg cgaatttcac
     7921 gcagcacgtc cagatacgcg ccggccggtt tcaccattaa gcaatccgcg ccctgggctt
     7981 cgtcgagcag tgattcgcga atcgcttcac ggcggttcat cggattcatt tgatacgtct
     8041 tgcggtcgcc ttttaacgcg gtacccgctg cttcacggaa ggggccgtag aaagaagagg
     8101 cgaacttggt ggagtaggac attattgccg tatcggtaaa accggcggca tccagcgctt
     8161 ggcggatagc ctggacttgt ccatccattg ccgcggaggg cgcaataaaa tctgctccag
     8221 ccgccgccgc gataacggcc tgcttgccga ggttggccag cgtcgcatcg ttatccacac
     8281 cgtgttcgca caacacgccg cagtggccgt gcgaggtgta ttcgcagaag caggtgtcgg
     8341 acatgacgat catctccggc acggtttgct tacagatgcg ggacattctt gccaccaggc
     8401 cgtcttcttt ccaggtatcg ctgccggtgt catcagtatg gtgagaaatg ccgaaggtca
     8461 taacggaacg aatgccagca tttgcgatac gttcaatctc tcgcgccagc tgcttttccg
     8521 ggatacgcat tacgccgggc atggcatcaa tagctttgta atcgtcgagt tcttcttcaa
     8581 caaagatcgg caacaccagg tcgttcaggc taagtgttgt ctcttcaaac atagcgcgca
     8641 gcgcagcgga tttgcgcagg cggcgagggc gatggataag gtctgtcatg gtctgcctga
     8701 tgtttgtgga atcgaaggcc cagtatacct gaatctgcag gcagatgttt tacgaaaacg
     8761 gtccttaacg tagcaggcgc agccccggcg gcggcagaac atggcgcttc ttttatatac
     8821 cgaagattaa tacatcaggc actatatcat tttaaataag aattagtttt acgttgtttt
     8881 tagttttatt t
//
LOCUS       DAJVSD010000188         8797 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.188, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000188 DAJVSD010000000
VERSION     DAJVSD010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8797
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.188"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..248
                     /locus_tag="OQP62_003403"
     CDS             <1..248
                     /locus_tag="OQP62_003403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HCS1722857.1"
                     /translation="CRLGKWYYGFEGQQFSNYYSFRSLEAPHKEVHTAGHSALNYFAA
                     GDMNAMSQELDRMERSSNEVVNQLEMLAVDLLKETTV"
     gene            complement(548..1960)
                     /gene="uxaC"
                     /locus_tag="OQP62_003404"
     CDS             complement(548..1960)
                     /gene="uxaC"
                     /locus_tag="OQP62_003404"
                     /EC_number="5.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronate isomerase"
                     /protein_id="HCS1722858.1"
                     /translation="MATFMTEDFLLKNDIARTLYHKYAAPMPIYDFHCHLSPQEIADD
                     RRFDNLGQIWLEGDHYKWRALRSAGVDESLITGKETSDYEKYMAWANTVPKTLGNPLY
                     HWTHLELRRPFGITGTLFGPDTAESIWTQCNEKLATPAFSARGIMQQMNVRMVGTTDD
                     PIDSLEYHHQIAADDSIDIEVAPSWRPDKVFKIELDGFVDYLGKLEAAADVSITRFDD
                     LRQALTRRLDHFAACGCRASDHGIETLRFAPVPDDAQLDAILGKRLAGETLSELEIAQ
                     FTTAVLVWLGRQYAARGWVMQLHIGAIRNNNTRMFRLLGPDTGFDSIGDNNISWALSR
                     LLDSMDVTNELPKTILYCLNPRDNEVLATMIGNFQGPGIAGKVQFGSGWWFNDQKDGM
                     LRQLEQLSQMGLLSQFVGMLTDSRSFLSYTRHEYFRRILCNLLGQWAQDGEIPDDEAM
                     LSRMVQDICFNNAQRYFTIK"
     gene            complement(1972..3444)
                     /locus_tag="OQP62_003405"
     CDS             complement(1972..3444)
                     /locus_tag="OQP62_003405"
                     /EC_number="1.1.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructuronate reductase"
                     /protein_id="HCS1722859.1"
                     /translation="MEQNIATAQVSVARPNWDKSRLVSRIVHLGCGAFHRAHQALFTH
                     HLLEKSDSDWGICEVNLMPGNDARLIANLKAQNLLYTVAERGAESTELKIIGSMKEAL
                     HPEFDGHAGILAAMARPETAIVSLTVTEKGYCTDPASGELDVNNPLIQNDLAHPQQPK
                     SAIGYIVEALNMRREQGLKAFTVLSCDNVRENGHVAKAAVLGLAKARDAALAAWIADN
                     VTFPCTMVDRIVPAATEETLQLVADQLGVYDPCAIACEPFRQWVIEDNFVNGRPDWDT
                     VGAQFVADVVPFEMMKLRMLNGSHSFLAYLGYLGGYDTIADTMTNPAYRRAALALMLD
                     EQAPTLSMPEGTDLEGYANLLIARFTNPSLKHRTWQIAMDGSQKLPQRLLDPVRLHLQ
                     QGDDYRRLTLGVAGWMRYVGGVDEQGKTIDVVDPLLAQYQAIHQQYQTPEERVRGLLA
                     IESIFGNDLPKNHEFVQAVTDAYQQLLQNGAKATVEALAK"
     gene            complement(3555..4739)
                     /gene="uxuA"
                     /locus_tag="OQP62_003406"
     CDS             complement(3555..4739)
                     /gene="uxuA"
                     /locus_tag="OQP62_003406"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HCS1722860.1"
                     /translation="MKQTWRWYGPNDPVTLSDVRQAGATGVVTALHHIPNGEIWSVDE
                     IQKRKAIVEEAGLEWSVVESVPIHEDIKTHTGQYDLWIKNYQQTLRNLAQCGIYTVCY
                     NFMPVLDWTRTDLEYVLPDGSKALRFDQIEFAAFELHILKRPGAEADYTAEEIAQAER
                     RFATMSEEDKARLTRNIIAGLPGAEEGYTLDQFRQHLATYKDIDKAKLREHFAYFLKA
                     IIPVADEVGVRMAVHPDDPPRPILGLPRIVSTIEDMQWMVETVNSMANGFTMCTGSYG
                     VRADNDLVDMIKQFGPRIYFTHLRSTLREENPKTFHEAAHLHGDVDMYEVVKAIVEEE
                     HRRKAEGSDDLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLKGLAEVRGVELAIQRAFF
                     SK"
     gene            5144..6448
                     /locus_tag="OQP62_003407"
     CDS             5144..6448
                     /locus_tag="OQP62_003407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1722861.1"
                     /translation="MKMTKLRWWIIGLVCVGTIVNYLSRSSLSVAAPAMMKELHFDEQ
                     QYSWVVSAFQLCYTIAQPITGYLMDVIGLKIGFFIFALLWSLINMAHALAGGWISLAF
                     LRGLMGLTEASAIPAGIKASAEWFPTKERGIAGGLFNIGTSIGAMLAPPLVVWAMLTF
                     ADSGIGTEMAFVITGGIGVLFAITWFLIYNSPNKHPWITHKELRYIEDGQESYLQDDN
                     KKPAVKEIVKKRNFWALAITRFLADPAWGTLSFWMPLYLINVMHLPLKEIAMFAWLPF
                     LAADFGCVAGGFLAKFFMEKMHMTTINARRCSFTIGAVLMISIGFVSITTNPYVAIAL
                     MSIGGFAHQTLSTVVITMSADLFKKNEVATVAGLAGSAAWMGQLSFNLFMGALVAIIG
                     YGPFFIALSLFDIIGAIILWVLIKDPEKHHPPMTEQPLASHR"
     gene            6924..7766
                     /locus_tag="OQP62_003408"
     CDS             6924..7766
                     /locus_tag="OQP62_003408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001787272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HCS1722862.1"
                     /translation="MVTEINTFEDFITKVRILLNKSQGADAVIFPELFTIELFTLLKK
                     WQERPISHLTLIDQFTDAYKQLFQQEAKERGQFIIAGSHLEQTGADRYENVAHIWGPD
                     GEHYAHSKTHIFPAERGWYTQEGDKMAVFQLPFAKVGFNICYEAEIPECAATLAEQGA
                     ELILTPSATFTEQGFWRVRHCCHARCIENQIYLVHCCLGGNPGGPLPGCWARSSILSP
                     CDVVWKNPQGIIAEAHVNQEDVISGEINLDVLYENRLGGAATTFKDRRRKAGIYNIWP
                     SHIK"
     gene            7805..8728
                     /locus_tag="OQP62_003409"
     CDS             7805..8728
                     /locus_tag="OQP62_003409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase"
                     /protein_id="HCS1722863.1"
                     /translation="MGYLKLPEGKRIAVNLGVDVDAQSLWLGGFNRPSPSFMSRGEFG
                     AQVGVPRLLKLFKENNIKTTFFIPGHTVDTFPEISKAIFDAGHEIAHHGYYHENPTLV
                     NRDTERRLMDLAFACYKRHFGIRPVGYRSPYWDYSENTLDLLEEAGFLYDSSLMARDL
                     VPYHPQRWQVNWETGNIAGPASAILEIPVSWYLDDFPALAYTGNQEGMSDTDGVLRRW
                     KDIFTYAYNHQENGLYAMALHPQIIGHGHHMMMLSRLIEHIKGHDGVWFATCEEIASV
                     WVDDEEDRQKMLRPDVRGVAPVPDDYGWPGK"
BASE COUNT         2070 a         2153 c         2276 g         2298 t
ORIGIN      
        1 agtgtcggct ggggaaatgg tactacggtt ttgaagggca gcagtttagc aattactaca
       61 gtttccgtag tctggaagcg ccgcataaag aggtgcatac cgctggtcac tctgcgctga
      121 actattttgc cgcaggcgat atgaatgcga tgtcgcaaga actcgacaga atggagcgat
      181 ccagtaatga ggtggttaac cagctggaaa tgctggctgt cgatttgtta aaagaaacca
      241 cagtgtgaag tcatgagtta ttaccgtata accaacagga gccatcatca acaggactga
      301 tgtatcacac tttctgcact ggagttattc cggacagaga aaaaaagcat gacgcagaag
      361 atggctgtgt ttgtttaccc gaatcactta ccttagtaag tgattcggga ttaatcagca
      421 acctctttgc tttttatcgg tggccagact ttggctggaa aagtgcgtta ctgctaaatt
      481 tctcactctc ttaccgcctt cctgcccctc gaaatacctg aaacctgtgc tcacagatta
      541 atagcgatta tttaatcgtg aaataacgct gggcattatt gaagcagata tcctgaacca
      601 tacggcttaa catcgcttca tcatcaggaa tctctccgtc ctgcgcccac tgtcccagca
      661 ggttacagag aatacgccgg aaatattcat gtcgcgtata agaaaggaaa ctgcgggagt
      721 cggtcagcat cccgacaaac tgacttaaca gtcccatttg cgacagttgc tccagttggc
      781 gcagcatccc gtctttctga tcgttaaacc accagccgga accaaactgc acttttccgg
      841 caattcccgg cccctggaag ttaccgatca tggtcgccag gacttcgtta tcacgtgggt
      901 tcaggcaata gaggatagtc ttgggcagtt cattggtcac atccatactg tcgagcaaac
      961 gggagagcgc ccagctaatg ttattatcgc caatagagtc aaagccggta tccggcccga
     1021 gcaggcggaa catacgggta ttattgttac ggatcgcgcc aatatgtagc tgcatcaccc
     1081 agccgcgcgc ggcgtactga cggcccagcc agaccagcac cgccgtggta aactgggcga
     1141 tctcaagttc gctcaacgtt tcgcctgcca gacgtttgcc cagaatggcg tcaagctgcg
     1201 cgtcgtcggg caccggcgca aatcgcagcg tttcaatgcc atgatcggac gcgcggcagc
     1261 cgcaggcggc gaaatggtcg aggcggcgag tgagcgcctg acgtaaatcg tcgaaacggg
     1321 taatgctgac atctgccgcc gcttccagtt tccccaggta atcgacaaag ccgtccagtt
     1381 cgattttgaa aactttgtcg gggcgccagc ttggcgcgac ttcaatatca atgctgtcgt
     1441 cggcggctat ctggtggtga tattccagag aatctatagg gtcgtcggtg gttccgacca
     1501 tccgcacatt catctgctgc ataataccgc gcgcggaaaa ggccggcgtc gccagtttct
     1561 cattacactg cgtccagata ctttccgcgg tatccggtcc gaacagcgta cctgtaatgc
     1621 caaatggacg gcgtagttca aggtgcgtcc agtgatacag cggattgccc agcgtttttg
     1681 gaacggtatt ggcccaggcc atatattttt cataatcgct ggtctctttg ccggtgatca
     1741 gcgactcatc cacgcctgcg cttcgtagcg ctcgccattt atagtggtcg ccttccagcc
     1801 agatctgacc gaggttatcg aaacggcgat cgtcggcgat ttcctgcgga cttaaatggc
     1861 agtggaagtc ataaatcggc atgggcgcgg cgtatttatg gtacagcgtg cgggcaatgt
     1921 cgtttttaag tagaaaatct tcagtcataa acgtagccat gatttatctc cttacttagc
     1981 cagcgcttct accgtggctt tcgcgccatt ctgcaatagc tgttggtaag cgtcggtaac
     2041 ggcttgcaca aattcgtggt tcttcggcag gtcgttgcca aagatagact cgatggccag
     2101 tagcccgcga acgcgttctt ccggcgtctg atattgctga tgaatcgcct gatactgtgc
     2161 aagcagcgga tcgacgacat caatggtttt accttgctca tcgacaccgc cgacataacg
     2221 catccatccg gcgacgccca gcgtcaggcg gcgatagtca tcgccctgtt gcaagtgcag
     2281 acgtaccggg tccaacagac gctgcggcag tttctgactg ccatccatcg cgatctgcca
     2341 ggtgcggtgt ttcaacgagg ggttagtgaa acgcgcaatc aacaaattcg catacccttc
     2401 cagatcggtg ccttccggca ttgacaacgt cggcgcttgt tcatcaagca tcagcgccag
     2461 cgccgcgcga cggtaagccg ggttagtcat agtatcggcg atagtgtcat acccgccgag
     2521 ataacccaga taggcgagga aagagtgact gccgttaagc atacgcagct tcatcatctc
     2581 aaacggtacg acatctgcaa cgaattgcgc gccgacggta tcccagtccg ggcgaccatt
     2641 cacaaagtta tcttcgatga cccactggcg gaagggttcg caggcgatag cgcaaggatc
     2701 ataaacgccc aactggtcgg caaccagttg tagcgtctct tcggtcgctg ccggaacaat
     2761 gcggtcaacc atggtgcagg ggaaggtcac attgtcggca atccatgcgg cgagggcggc
     2821 atcgcgagct tttgccaggc cgaggacggc agccttcgcg acgtgaccat tctcgcgcac
     2881 gttatcgcac gacagcacgg taaaagcttt cagtccttgc tcccggcgca tgtttagcgc
     2941 ttcgacaata tagccaatgg cggatttagg ctgctgtgga tgggcaagat cgttttggat
     3001 cagcgggtta ttgacatcaa gctcgccgct ggcggggtcg gtgcagtagc ctttttcggt
     3061 tacggttaag gagacgatgg cggtttccgg gcgcgccatt gccgccagaa tccctgcatg
     3121 accgtcgaat tcagggtgta gcgcttcttt cattgaaccg ataattttca gttcggtgct
     3181 ttctgcgccg cgttctgcaa cggtgtacag cagattttgc gctttcaggt tcgcgatcag
     3241 ccgcgcgtcg ttacccggca tcaggttcac ttcacaaatg ccccagtcgc tgtcgctctt
     3301 ttccagtaga tgatgggtaa agagcgcctg gtgcgcgcgg tgaaacgccc cgcagcccag
     3361 atgcacaata cgggatacca gacgtgattt gtcccagttt gggcgggcga cggaaacctg
     3421 ggcggtggcg atattctgtt ccattgcaaa ctcctgtcat tcgacgtctt cgcccgcgat
     3481 ctccggggcg aggcatgttg ctattgcatt gagtagggga aatcgcatga cgcgtcgcgc
     3541 catgcgaaag aaggttattt gctaaagaaa gcgcgctgga tagccagttc gacgccgcgg
     3601 acttccgcaa gccctttcag acggccaatg gcggaataac ccggattcgt tttcttcttc
     3661 agatcgtcca gcatctgatg accgtggtcc gggcgcattg ggatcagatc gtcgctacct
     3721 tcggctttac gacggtgctc ttcttccaca atcgctttaa cgacttcata catatccaca
     3781 tcgccgtgca aatgggcggc ctcgtggaag gtctttggat tctcttcgcg cagcgtagag
     3841 cgcagatgcg taaagtagat gcgcggacca aattgcttga tcatatcaac cagatcgttg
     3901 tcggcgcgca cgccgtaaga tccggtacac atggtgaagc cgttcgccat gctattaacg
     3961 gtttcaacca tccattgcat gtcttcaatg gtagagacaa tgcgcggcag gccgagaata
     4021 gggcgcggcg gatcgtcagg gtgaacggcc atacgcacgc caacctcgtc ggcaaccgga
     4081 ataatggctt tcaggaaata ggcaaaatgt tcacgcagtt ttgctttatc gatatcttta
     4141 tacgtcgcca ggtgttgacg gaactgatcc agcgtatagc cttcttccgc gccaggtaaa
     4201 ccggcaataa tgttgcgggt cagacgtgct ttgtcttcct cgctcatggt ggcgaaacgc
     4261 cgctctgcct gagcaatctc ttctgccgta tagtcggctt ctgctcccgg acgcttcagg
     4321 atgtgcagtt cgaacgcggc gaattcaatc tggtcaaaac gcagcgcttt tgaaccatcc
     4381 ggcaatacgt attccagatc cgtacgtgtc cagtccagca ccggcataaa gttatagcaa
     4441 accgtataga taccgcattg cgccaggtta cgcagcgttt gctggtagtt tttgatccat
     4501 aaatcgtact gaccggtgtg ggttttgatg tcttcgtgga taggtacgct ctctaccaca
     4561 gaccactcca gacccgcctc ttcaacgatt gctttacgtt tctggatctc gtctaccgac
     4621 caaatttctc cattcggaat atggtgtaac gccgttacca cgccggttgc gccagcctgg
     4681 cgtacatctg acagcgttac cgggtcgtta ggtccgtacc agcgccaggt ttgtttcata
     4741 tctcgtttcc tcttcttgcg ataacgtctt cgtggttgac ccattgccag ccaacatcga
     4801 aacgtgcttt gtaaacccgt tctgccccct aaattcaacc aaaatttttc tcatgtcaac
     4861 cttattatct aaattggcta gccaaatcac aaatatcatc attcacggtc tgccaatttt
     4921 atttatttga tctgcgtcaa tttttgctgg gtgaaaagca ttcaccattc aacttgaaat
     4981 gagttgatgt atttatttca agaatattaa gggcgggagt tgccgccaga ttttgaccgg
     5041 tccggatgag aaaatattga ttggtcaacc aatttttgta atttcagttt tcccgctaca
     5101 ggtcagacgg cgcggagcta atgtttttta acgaggcttt atcatgaaga tgacaaaatt
     5161 aagatggtgg attatcggcc tggtctgcgt ggggaccatc gtaaactacc tgtcccgtag
     5221 ctcgcttagc gttgcggcgc cagcgatgat gaaagaactc cattttgatg agcaacaata
     5281 ttcctgggtg gtgagcgcct tccagctttg ttacaccatt gcgcagccga tcaccggcta
     5341 tttgatggat gtcatcggac tgaaaatcgg cttctttatc tttgccttgt tgtggtcgct
     5401 gatcaacatg gcgcacgcgc tggccggcgg ctggataagc ctggcatttc tgcgtggtct
     5461 gatggggcta accgaagcgt cagcgattcc ggccgggatt aaagccagcg ccgaatggtt
     5521 cccgacgaaa gaacgtggta ttgcgggggg cctgtttaat atcggtactt caattggcgc
     5581 gatgctggcg ccgccgctgg tggtctgggc gatgctgacc tttgctgata gcggcatcgg
     5641 tactgaaatg gcgtttgtga ttaccggtgg gatcggcgtg ctgttcgcca tcacctggtt
     5701 cctgatttat aactcgccaa ataaacaccc gtggatcacc cacaaagagc tgcgttatat
     5761 cgaagacggc caggaaagct atctccagga cgataataaa aaaccggccg ttaaagagat
     5821 cgttaaaaag cgtaacttct gggcgttggc gattacccgt tttcttgctg acccggcatg
     5881 gggaacgctg agtttctgga tgccgctgta tctgattaac gtgatgcatc tgccgttaaa
     5941 agagatcgcc atgtttgcct ggctgccgtt cctggcggcg gacttcggct gcgttgcagg
     6001 cggtttcctg gcgaagttct tcatggaaaa gatgcacatg accacgatca atgcgcgtcg
     6061 ttgtagcttt accatcggcg ctgttttgat gatttcgatc ggttttgtca gcattacgac
     6121 taacccgtat gtcgccattg cattgatgag tattggcggt tttgcgcacc agacgctgtc
     6181 taccgttgtg attaccatga gcgctgacct gttcaagaaa aatgaggtcg cgacggttgc
     6241 cggtctggca ggatctgcgg catggatggg acagttaagc ttcaacctgt ttatgggggc
     6301 attggtcgct attatcggtt acggcccgtt cttcattgca ctcagtctgt tcgatattat
     6361 cggcgccatc atcctgtggg tactgattaa agatccggaa aagcaccacc cgccaatgac
     6421 ggaacagccg ctggcgtctc accgctaaag ctgtctcggt ttcacaggcc tgataagcga
     6481 agcgctaccg ggttctaacg gccaccttcg ggtggccgtc ttcattaccc ttatcggtaa
     6541 aaatacgcgt tggttttata ccagcgcgtt atcatttagt ttgcctgatt attttcagat
     6601 gctgaaaata atattgtggt aagggttatt gtttttcgcc tggattttta tcgactctct
     6661 gtctcgctgc gatcatcgat aaagtcccct ttatgtaaat aaaggttcaa tgcttctact
     6721 cttttctcca tatattttgc gcagcttcac aaaaaataac ctgatgtcgt aatgtccact
     6781 ccctaatatt ctccatgcgc tatacgttaa tttaagttta aatttcatgc tggggatatc
     6841 acgatgtcac gtaattttac tgtttcagcc tgtcagtata ttgttactga aataaacact
     6901 tttgaagatt tcataacaaa ggtattgtta ctgaaataaa cacttttgaa gatttcataa
     6961 caaaggtaag gatacttctt aataaaagtc agggggctga tgccgttatc ttcccggagc
     7021 tatttaccat tgagctattt acactattga aaaaatggca agaaagaccc atttcacacc
     7081 taactttaat tgatcagttt acggatgcct ataagcagct ttttcaacag gaagcgaaag
     7141 aaagaggaca gttcattatt gctggctctc atctggagca gactggagca gatcgctatg
     7201 agaatgttgc gcatatatgg ggacccgatg gcgaacatta tgctcacagt aagacgcata
     7261 tcttcccggc tgaacggggt tggtatactc aggaaggcga taaaatggct gtttttcaac
     7321 tgccatttgc aaaggtgggt tttaatattt gttatgaagc agaaataccg gagtgtgctg
     7381 cgacgctggc ggaacagggt gctgagttaa ttttaacgcc ttccgctacg tttactgaac
     7441 agggattttg gcgagtcagg cattgttgcc acgcacgttg tattgaaaat caaatttatc
     7501 ttgttcactg ttgcctggga ggaaacccgg gcgggccact gccaggctgc tgggcccgaa
     7561 gttcaatttt aagcccctgt gatgtcgtgt ggaaaaatcc acaaggtatt atcgcagagg
     7621 cgcacgtcaa tcaagaggat gtcatttcag gagaaattaa cctcgatgtt ctatatgaaa
     7681 atagacttgg gggggcagca acaacgttca aggacagacg cagaaaagca ggcatatata
     7741 atatctggcc atcacacatt aaataacaga atgtgtccct tctatgtatt agctggaggt
     7801 cgttatggga tatttaaaat tacctgaggg taaaaggatt gcggtcaatc ttggtgtcga
     7861 tgtagatgct cagtctttat ggctgggcgg atttaatcga ccgtcgccat cctttatgtc
     7921 acgaggagag tttggcgcac aagttggcgt tccaaggctt ctgaaattgt tcaaagaaaa
     7981 taatatcaaa accacctttt ttattcccgg acacactgta gacaccttcc cggaaatcag
     8041 taaagcgatt tttgatgccg ggcatgaaat cgctcaccat ggctactatc atgaaaaccc
     8101 gacgctggtg aatcgtgata cagaacgccg acttatggat ctggcgttcg cctgttataa
     8161 aagacatttt ggcatacgcc ctgtgggata ccgttctccc tattgggatt atagcgagaa
     8221 tacgctggat cttctggagg aagccggttt tctctatgac agtagcctga tggcgagaga
     8281 tcttgtgcct taccatcctc aacgttggca ggtgaattgg gaaacgggaa atatcgcagg
     8341 cccggccagc gcgattctgg aaattcctgt tagctggtat ctggatgatt ttcccgcact
     8401 ggcgtatacc ggtaaccagg aggggatgag cgatactgac ggtgttctgc gacgctggaa
     8461 ggatattttt acctatgctt ataaccatca ggaaaacggt ttatatgcga tggctcttca
     8521 tccgcagata atcggtcatg ggcatcatat gatgatgttg tcacgtttga ttgaacatat
     8581 taaagggcat gatggcgtat ggtttgcaac ctgtgaagag atagccagtg tctgggtgga
     8641 tgacgaagag gatcgacaaa aaatgctccg tcctgatgtt cgtggcgtag cgccggttcc
     8701 ggatgattat ggctggccag gcaaatgata tcacctcatg acaatgttaa tatcagtcgg
     8761 gtaacggatt acccgggcag aagttacctg tttgccc
//
LOCUS       DAJVSD010000189         8790 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.189, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000189 DAJVSD010000000
VERSION     DAJVSD010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8790)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8790)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8790
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.189"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..599)
                     /gene="upp"
                     /locus_tag="OQP62_003410"
     CDS             complement(<1..599)
                     /gene="upp"
                     /locus_tag="OQP62_003410"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HCS1722864.1"
                     /translation="MKIVEVKHPLVKHKLGLMRENDISTKRFRELASEVGSLLTYEAT
                     ADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAGLGMMEGVLENVPSARISVVGMY
                     RNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLV
                     AAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDA"
     gene            1012..2049
                     /gene="purM"
                     /locus_tag="OQP62_003411"
     CDS             1012..2049
                     /gene="purM"
                     /locus_tag="OQP62_003411"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001656828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HCS1722865.1"
                     /translation="MTDKTSLSYKDAGVDIDAGNALVDRIKGVVKKTRRSEVMGGLGG
                     FGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDAIGIDLVAMCVNDLVVQGAEP
                     LFFLDYYATGKLDVDTAASVINGIAEGCLQSGCALVGGETAEMPGMYHGEDYDVAGFC
                     VGVVEKSEIIDGSRVAEGDVLIALGSSGPHSNGYSLVRKIIDVSGCDPQTTLLEGKPL
                     ADHLLEPTRIYVKSVLELIENIDVHAIAHLTGGGFWENIPRVLPENTQAVINESSWQW
                     PAIFTWLRTAGNVSRHEMYRAFNCGVGMVIALSAPEADKALALLNEKGENAWKIGIIK
                     ASDSEQRVVIE"
     gene            2049..2687
                     /gene="purN"
                     /locus_tag="OQP62_003412"
     CDS             2049..2687
                     /gene="purN"
                     /locus_tag="OQP62_003412"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HCS1722866.1"
                     /translation="MNIVVLISGNGSNLQAIIDACEAKKIKGTLRAVFSNKADAFGLE
                     RAREAGIPAQALTADRFDSRDAFDRELIRKIDAYAPDVVVLAGFMRILSPMFVAHYYG
                     RLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAND
                     SEDDITARVQTQEHAIYPLVIGWFAQGRLKMRDNAAWLDGRRLPPQGYASDE"
     gene            2876..4942
                     /gene="ppk1"
                     /locus_tag="OQP62_003413"
     CDS             2876..4942
                     /gene="ppk1"
                     /locus_tag="OQP62_003413"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HCS1722867.1"
                     /translation="MGQEKLYIEKELSWLAFNERVLQEAADKSNPLIERMRFLGIYSN
                     NLDEFYKVRFAELKRRIIISEEQGSNSHSRHLLGKIQSRVLKADQGFDGLYNELLLEM
                     ARNQIFLINERQLSVNQQSWLRHYFKHYLRQHITPILINRETDLVQFLKDDYTYLAVE
                     IIRGDTINYALLEIPSDKVPRFVNLPPETPRRRKPMILLDNILRYCLDDIFKGFFDYD
                     ALNAYSMKMTRDAEYDLVHEMESSLMELMSSSLKQRLTAEPVRFVYQRDMPAALVDVL
                     REKLTISRYDSIVPGGRYHNFKDFINFPNVGKANLVNKPLPRLRHLWFDKEKFRNGFD
                     AIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHN
                     GKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKEGDDVV
                     RYAHIGTGNFNEKTARLYTDYSLLTADARITNEVRRVFNFIENPYRPVTFDYLMVSPQ
                     NSRRLLYEMIDREIANAQQGLPSGITLKLNNLVDKGLVDRLYAASGSGVQVNLLVRGM
                     CSLIPQLEGISDNIRAISIVDRYLEHDRVYIFENGGDKQVWLSSADWMTRNIDYRIEV
                     ATPILDPRLKQRVLDIIDILFSDTVKARFIDKELSNRYVPRGNRRKVQAQLAIYDYIK
                     SLEQPD"
     gene            4947..6488
                     /gene="ppx"
                     /locus_tag="OQP62_003414"
     CDS             4947..6488
                     /gene="ppx"
                     /locus_tag="OQP62_003414"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HCS1722868.1"
                     /translation="MPIYDKSPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQR
                     VHLADGLGADNKLSEEAMERGLSCLSLFAERLQGFSPSSVCIVGTHTLRQAQNAADFL
                     KRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPR
                     LVESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQYRIQGWNVAMGASG
                     TIKAAHEVLLALGEKDGFITPERLDKLKSEVLKHRSFNALSLPGLSEERKAVFVPGLA
                     ILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQDVRSRTAKSLANQYNIDREQAR
                     RVLETTMQMYEQWQAQQPKLAHPQLEALLRWAAMLHEVGLNINHSGLHRHSAYILQHS
                     DLPGFNQEQQMMMATLVRYHRKAIKLDDMPRFTLFKKKQYLPLIQLLRLGVLLNNQRQ
                     ATTTPPTLRLTTDDSHWTLCFPHDWFSQNALVLLDLEKEQQYWEAVTGWRLNIEEESS
                     PEIAA"
     gene            complement(6524..8737)
                     /locus_tag="OQP62_003415"
     CDS             complement(6524..8737)
                     /locus_tag="OQP62_003415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing phosphodiesterase"
                     /protein_id="HCS1722869.1"
                     /translation="MKLNKTYINIRDKWWGLPLILPSILLPVLSSANTYALTSTGNVV
                     LFYLPLAFMLSLMLFFGWAALPGIVLAIFWRRYPQTGLYETLSVTMHFIITIVLSWGG
                     YRVFSPRRNNVSHGDAHLLFQRMFWQVFCSATLFLVIYQFAAFVGMYESKASLMGVMP
                     FNINTLINYQALLVGNLVGVPLCYFIIRTLRNPLHLRGYYQQLKLQIDSKATKKEIVI
                     WLAVLTTLMFILCMPLTDNSSIFSTNYTLSLLLPVMLWGAMRYGYKFISIIWAVVLIT
                     SIHYYQRYMPWYSGYDTQLAITSSSYLVFSFIVNYMSVLATRQRVVSGRARRLAYLDP
                     VVHLPNLRALNRALKNAPWSTICFLHVPGLELLGKNYGVMLRIQYKQKLSHWITPMLA
                     SNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQFRFIWDGLPLQPPVGVSYCCVRS
                     PVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAMHLQRDLKGRIAMMNRLQQALEHDH
                     FFLMAQPIFGVRGDVYHEILLRLRDDNGDVINPDNFLPVAHEFGLSSAIDLWVIENTL
                     RFMAASREYMPAHRFAINLSPTSVCRARFPAEVKQLLTQYQVEPWQLVFEVTESNSLT
                     NAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKNVDADILKIDGSFIRNIVSNSLD
                     YQIVASICHLARMKNMQVVAEYIESEEIRSVVLSLGIDYLQGYLIGEPQLLSEIQ"
BASE COUNT         2232 a         2254 c         2243 g         2061 t
ORIGIN      
        1 gcatcgccaa gccccggaat aatgtatccg tgctcgttaa gcccctgatc gatagaggcg
       61 gtgtacagtt caacgtccgg gtgcgctttt tccagcgccg caatgccttc cggcgcggcg
      121 accagcacca gcaccttaat gctgctacag cctgcttttt tcagcaggtc gatggtcgcg
      181 atgacagaac cgccggtcgc cagcatcggg tcgacgatca gcgccatgcg ctcatcaatg
      241 ttcgatacca gtttctggaa ataaggtact ggctcgagcg tctcttcgtt acggtacatc
      301 ccgactacgc tgatacgcgc gctcggtaca ttttccagaa cgccttccat catgcccaac
      361 cccgcgcgca gaatcggcac aacggtaatt tttttacctt tgatctggtc gatttccacc
      421 gggccattcc agccttcgat ggtgactttt tccgtttcca ggtcggctgt cgcttcatac
      481 gtcagcaggc tgcctacttc tgaggcgagt tcacgaaagc gtttagtgct aatgtcgttt
      541 tcacgcatca gacccagctt gtgtttgacg agtgggtgtt tgacttccac gatcttcata
      601 ctcttctcct atcctcagat gactggcaac cacaaaaaaa atcgccggat tataccgctt
      661 ttcctctctg acgcaacaca atgtatgctt gacctggatc aaccaaaagc gctgatagcg
      721 gaaaagtgag tataaatcac tcacgttgaa actggcgata aaagctaaca accgattgaa
      781 tcttagcaat tttaagggtg aatgacctgt cccgaccacc tgtcgtaaac caagtgctgg
      841 atatcctttt cttttttacc aacagggaaa ttttcaagca gcgaccgaaa ccatgccaaa
      901 aaatcgcccg gataaccagg gcgcagacca cgctcgcaaa cgtttgcttt ccctgttaga
      961 attgcgccga atttaacttt taccgcaaga aaaaacgtgg ggaaccaggc agtgaccgat
     1021 aagacctctc ttagctataa agatgccggc gtcgatattg atgcgggtaa cgctctggtt
     1081 gatcgaatca aaggcgtagt gaagaaaact cgccgctcgg aggttatggg cggtctgggc
     1141 ggtttcggtg cgctgtgcgc gttgccgcaa aaatatcgtg aaccggtact ggtttccggc
     1201 actgacggcg taggcaccaa acttcgcctg gcgatggact taaagcgtca cgacgctatc
     1261 ggtattgatc tggtggcgat gtgcgtaaac gatctggtcg ttcagggcgc ggaaccgctg
     1321 tttttcctcg attactatgc caccggtaaa ctggatgtcg ataccgccgc cagcgtgatc
     1381 aacggtattg ccgaaggctg cctgcaatcc ggctgcgcgc tggtcggcgg cgagacggcg
     1441 gaaatgccgg gcatgtatca cggcgaagat tacgatgtgg cgggtttctg cgtcggcgta
     1501 gtcgaaaaat cagaaatcat cgatggctcc cgggttgccg aaggcgacgt gctgattgcg
     1561 ctcggctcca gcggcccgca ctcgaatgga tattcgctgg tgcggaaaat tattgacgtt
     1621 agcggctgcg atccacagac cactctgctg gaagggaaac cgctggccga tcatctgctt
     1681 gaaccgaccc gtatctacgt aaaatcggtt ctggaactga ttgaaaacat cgatgtacac
     1741 gctatcgccc acctcaccgg cggcggcttt tgggaaaata ttccgcgcgt tctgccggag
     1801 aatacccagg cggtaattaa tgagtcgtcc tggcagtggc ccgccatctt tacctggctg
     1861 cgaaccgccg gtaatgtcag ccgacatgaa atgtaccgtg cctttaactg cggcgtcggc
     1921 atggtgattg cgctctctgc tccggaagcg gacaaagcgc ttgctctgct aaacgagaaa
     1981 ggtgaaaacg catggaaaat cggtatcatc aaagcctctg attccgaaca gcgtgtggtt
     2041 attgaataat gaatattgtg gtgctgattt ccggcaatgg aagcaattta caggcgatta
     2101 tcgatgcctg cgaagcgaag aaaattaaag gcaccctcag ggcagtattc agcaataagg
     2161 ccgacgcgtt cggccttgaa cgcgccagag aagccggcat tccggcgcaa gcgctgactg
     2221 ccgatcggtt tgacagccgc gacgccttcg atcgcgagtt gattcgcaag atagacgcgt
     2281 atgcgcccga tgtggtcgtg ctggccggtt ttatgcgtat tctgagtccg atgtttgtcg
     2341 cgcattacta cgggcgtctg ctgaacattc acccttccct gctgccaaaa tatccggggt
     2401 tgcataccca tcgccaggcg ctggaaaacg gcgatgagga gcacggtacc tcggtgcatt
     2461 tcgtgacaga cgaactcgac ggcggcccgg tcattctcca ggcgaaggtg ccggtttttg
     2521 ccaacgacag cgaagatgat atcaccgcac gcgtacaaac tcaggaacat gcgatttatc
     2581 cgctggtgat tggctggttt gcgcaggggc gtctaaagat gcgcgataac gccgcctggc
     2641 tggacgggcg tcgtctgccg ccgcaaggtt atgcgtctga cgaataatat gtcatcggcc
     2701 agggctgcgt ctgcttgccg gatggcggca taaatgccta tccggcctac tcttttccct
     2761 tcctttatgc tatcagttta ttgtcatatt tttctgacgc tgttggacat taacgcgtaa
     2821 tgctcgccat aattatcagg cagtgtcccg tgaataaaac ggagtatagg tagtaatggg
     2881 tcaggaaaag ctatatatcg agaaagagct gagctggtta gcatttaacg aacgcgtgtt
     2941 acaggaagca gcggataaat ccaacccgtt gattgagcgg atgcggttcc tgggaatcta
     3001 ttctaataac ctcgacgagt tctacaaagt gcgtttcgct gaactgaaac gacgcattat
     3061 tatcagcgaa gaacagggtt caaattctca ttcacgccat ttgttaggca aaattcagtc
     3121 ccgcgtgttg aaagcagacc aggggttcga cggcctgtac aacgaattac tgctggaaat
     3181 ggcgcgtaat caaatctttc tgatcaacga gcgtcagctc tcggtgaacc aacaaagctg
     3241 gttgcgccac tattttaagc actatttgcg ccagcatatt accccgattc tcattaaccg
     3301 ggagacggat cttgttcagt ttttaaaaga tgattacacc tatctggcgg tggagattat
     3361 ccgcggcgac accatcaact atgcgctgct ggagataccg tccgacaaag tcccacgctt
     3421 cgttaatctg ccgccggaga caccgcgcag acgcaagccg atgatcctac tggataatat
     3481 tctgcgctac tgcctggatg acatttttaa agggttcttc gactatgacg cgctcaatgc
     3541 ctattcgatg aaaatgaccc gcgatgccga atatgacctg gtgcatgaga tggaatccag
     3601 tctgatggag ctgatgtcct ccagcctgaa gcagcgcctg accgctgaac ctgtgcgctt
     3661 tgtctatcaa cgcgatatgc ccgccgcgct ggtcgacgtg ctgcgggaaa aactgacgat
     3721 ctcccggtat gactcaatcg tacccggcgg gcgctaccac aattttaaag actttattaa
     3781 ttttccgaat gtcggtaaag ccaacctggt caataaaccg ttaccgcggt tacgccatct
     3841 ttggtttgat aaagagaagt ttcgtaacgg tttcgacgcg attcgtgaac gtgatgtgct
     3901 gctctattat ccgtaccata ccttcgagca tgtactggaa ctgctgcgcc aggcgtcgtt
     3961 tgacccaagc gtgctggcga tcaaaatcaa tatttatcgc gtagcgaaag actcgcgcat
     4021 tattgactcg atgatccatg ccgcccataa cggcaaaaaa gtcaccgtgg tggtggagtt
     4081 gcaggcgcgc ttcgatgaag aggcgaatat tcactgggcc aagcggttaa ccgaagcggg
     4141 cgtccatgtt attttctctg cgcccgggct gaaaattcac gccaaactct ttctcatctc
     4201 acgaaaagag ggcgatgacg tggtgcgtta tgcgcatatc ggcaccggta acttcaacga
     4261 aaaaacggcg cggctgtata ccgattattc gctgctgacc gccgatgcgc gcattaccaa
     4321 tgaagtgcgc cgggtcttta attttattga aaacccctat cgcccggtca ctttcgatta
     4381 tttgatggtt tctccacaaa actcacggcg tctgctgtat gagatgatcg atcgtgaaat
     4441 tgccaatgcc cagcaaggct taccgtcagg gattacctta aagcttaaca acctggtcga
     4501 taaagggttg gtcgacaggc tatacgccgc gtcgggttcg ggcgtccagg tcaatctgct
     4561 ggtgcgcggt atgtgttctc ttattccgca actggaaggc attagcgata atattcgcgc
     4621 gattagcatc gtggatcgct atctggaaca cgatcgggtt tatattttcg aaaacggcgg
     4681 tgataagcaa gtttggctct cttcagctga ctggatgacg cgtaatattg actaccgtat
     4741 cgaagtcgct acgcctatcc tcgacccgcg gcttaaacaa cgcgtcctgg atatcattga
     4801 cattctgttt agcgacacgg taaaagcgcg ttttatcgat aaagaactca gcaaccgcta
     4861 cgtaccgcgc ggcaatcgcc gcaaagttca ggcgcagctg gcaatttatg actacatcaa
     4921 atcactcgag caaccagact aacgctatgc caatttacga taaatcccct cgcccgcagg
     4981 agttcgctgc ggtcgatctc ggctcaaaca gctttcatat ggtcattgcc cgcgtggttg
     5041 acggcgcaat gcagattatc gggcgcttaa aacagcgcgt ccatctggcg gacgggctgg
     5101 gcgcagataa caaactcagc gaagaagcca tggaacgggg gcttagctgt ctgtcgctgt
     5161 ttgctgaacg cttacaaggt ttctcccctt ccagcgtttg tatcgtaggc acccatacgt
     5221 tacgtcaggc gcaaaatgcc gctgattttc tcaaacgcgc ggaaaaggtt attccctacc
     5281 cgatagagat tatttccggt aacgaagaag cgcgcctgat ttttatgggc gtagaacata
     5341 cgcagccgga aaaaggccgc aagctggtga tcgatatcgg cggcggatca acagagctgg
     5401 ttattggcga aaacttcgaa cccaggctgg ttgaaagccg tcgtatgggc tgcgtgagct
     5461 tcgcgcagct ctactttccc ggcggcgtta tcaataaaga aaacttccag cgcgcccgaa
     5521 tggcggcagc gcaaaaactg gaaaccttaa cctggcagta tcgtattcag ggttggaacg
     5581 tggcgatggg cgcttccggt acgattaagg ccgctcatga agttctcctg gcgctgggtg
     5641 agaaagatgg cttcattacg ccggagcgcc tcgataaact gaagtcagaa gtgttgaagc
     5701 accgctcctt taatgcgctc agcctgccgg gtctgtctga agaacgaaaa gcggtctttg
     5761 tgccgggcct ggcgattctg tgcggcgttt ttgatgctct ggctatccgc gagcttcgcc
     5821 tttccgacgg cgcgttgcgc gaaggcgtgc tgtatgaaat ggaaggccgc ttccgccatc
     5881 aggatgttcg cagccgtacc gcaaaaagtc tggccaatca atacaacatt gacagagaac
     5941 aggccagacg tgtgctggaa accaccatgc agatgtacga gcagtggcag gcccagcagc
     6001 caaaactggc gcatccgcag cttgaagcgt tgctccgctg ggcggcaatg ctgcatgagg
     6061 ttggactgaa tattaatcac agcggtttac atcgccattc ggcttatatt ctgcaacaca
     6121 gcgatttgcc cggctttaat caggagcagc aaatgatgat ggcgacgctg gtgcgttatc
     6181 atcgtaaagc cataaaactg gatgatatgc cccgctttac gctgtttaag aaaaaacagt
     6241 atctgccgtt aattcagcta cttcggctgg gcgtattact gaacaaccag cggcaggcga
     6301 ccaccacacc gccgacgctg cggctaacga ccgatgacag ccactggacg ttatgttttc
     6361 cgcatgactg gttcagccag aatgcgctgg tactgcttga tctggaaaaa gaacagcagt
     6421 actgggaagc ggtaactggc tggcgtctca atattgagga agaaagctcg ccggagatcg
     6481 ccgcgtaaat tgtggatcag acgccgcgct gcggcgtctg cctttactga atctcagata
     6541 atagctgcgg ctcgccaatt aaatatccct gaagatagtc gatccccaac gacagcacta
     6601 cgcttcgtat ttcttcgctc tcgatatact ccgcgacgac ctgcatattt ttcattcgcg
     6661 ctaaatgaca aatagaagcc acaatctgat aatcgagact gtttgacact atattgcgaa
     6721 taaaactgcc gtcaatttta agaatatcgg cgtcaacgtt tttcagccgc gcatagctgg
     6781 cgtagccagt accgaaatca tcaatcgcta tctgacagcc aaactgctgt agctgtccca
     6841 gtgtcaactg cgcctgctca gcattggtga gagagttgct ttccgttacc tcaaaaacca
     6901 gttgccaggg ttcaacctga tattgcgtaa gcagctgctt aacttctgca gggaaacggg
     6961 cgcggcatac cgatgttggc gacagattaa tggcaaaacg atgcgcgggc atatattccc
     7021 ggctggccgc cataaaccgt agcgtgtttt caatcaccca gagatcgata gcggaagaca
     7081 aaccaaactc atgcgccacg ggtaaaaaat tgtccgggtt gataacgtcg ccgttgtcat
     7141 ccctgagtcg cagtaaaatt tcatggtaaa cgtccccacg aacaccgaaa ataggctgcg
     7201 ccatcaggaa aaaatgatcg tgctccaacg cctgttgcag gcgattcatc atcgcaattc
     7261 tgcccttcaa atcgcgctgc aggtgcattg cgccgcgccg ctgtaaatcc tccggcgcgt
     7321 tagtcgtcaa cgaaagatcg gaactggtgc ttaattcgcc caacagcaga taaaggtggc
     7381 taaccggaga acgcacgcag cagtagctca cgccaacagg cggctgtagc ggcagtccat
     7441 cccaaataaa ccgaaactgc ttaatatgtt tatccagcgc ttcaatacgc tgctgatgcg
     7501 cctctgtatt aagacgcagc accaggtcgt gccctgacat ctggtagacg cactcatttg
     7561 aggccaacat cggcgtaatc cagtgagaga gcttttgctt atactggatg cgtagcatga
     7621 cgccataatt tttacccaat agctccagac ccggcacgtg taaaaaacag atcgtagacc
     7681 agggtgcatt tttaagcgcg cggtttaacg cacgtaaatt gggaagatgt acaaccgggt
     7741 caagataggc cagccgccgt gcgcgaccac tcactacgcg ctgacgcgtg gccagtacag
     7801 acatataatt aacaataaaa gaaaaaacca gatagctcga agaggtaatc gctaattgcg
     7861 tatcataacc tgaataccag ggcatataac gctgataata atgaatcgac gtaattagca
     7921 cgacggccca gataattgaa ataaacttat aaccatagcg catcgcgccc cacagcatga
     7981 ccggcaataa taacgaaagc gtatagttgg tactaaatat tgagctatta tccgtcaatg
     8041 gcatacacag tataaacatt agtgtagtca atacagccag ccaaataacg atctcttttt
     8101 tagtggcctt gctatcaatc tgtagcttta attgctgata atacccccgc aggtgcagcg
     8161 gattgcggag agtacgaata ataaaatagc acaatggcac gccgacaagg ttaccgacca
     8221 gtaacgcctg gtaattaatc agcgtgttga tattaaaggg cattaccccc atcaggctgg
     8281 ctttactttc gtacatgcca acaaaagcgg caaactggta aatgaccaga aataatgtcg
     8341 ctgaacaaaa tacctgccag aacattcgtt gaaacaacag gtgggcgtcg ccgtgggaaa
     8401 cattgtttcg ccggggggaa aagacacgat agccgcccca gcttagcacg atagtaatga
     8461 taaagtgcat cgtcacagaa agggtttcat acagccctgt ctgcgggtat ctgcgccaga
     8521 agatagcaag cacaatgccc ggcagtgctg cccagccgaa aaagagcatc agactaagca
     8581 taaaagctaa cggcaggtaa aaaagaacca catttccagt gctggtaagc gcataagtat
     8641 ttgcgctact taaaacaggt agtaaaatcg aagggagaat gagcggtagt ccccaccatt
     8701 tatctctgat atttatataa gttttattca gcttcataga tgctcagcag aaccccccaa
     8761 tcccaaaggg gcgttaacag acaggcatcc
//
LOCUS       DAJVSD010000190         8751 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.190, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000190 DAJVSD010000000
VERSION     DAJVSD010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8751
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.190"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(5..2257)
                     /gene="katE"
                     /locus_tag="OQP62_003416"
     CDS             complement(5..2257)
                     /gene="katE"
                     /locus_tag="OQP62_003416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase HPII"
                     /protein_id="HCS1722870.1"
                     /translation="MSHNEKSPHQSPVHDTRESQPGLDSLAPSDGSHRPTPEPTPPGA
                     QPTAPGSLKAPETANDKLTALDAFRKGSENYALTTNQGVRIADDQNSLRAGSRGPTLL
                     EDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKDLSDITKAAFLCDPQKITPVF
                     VRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNTPIFFIQDAHKFPDFVHAV
                     KPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAISDRGIPRSYRTMEGFGIHTFRL
                     INAQGKATFVRFHWKPLAGKASLVWDESQKLTGRDPDFHRRDLWEAIEAGDFPEYELG
                     LQLIAEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGH
                     IVPGIDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYHNFQRDGMHRMDI
                     DTNPANYEPNSINDNWPRETPPAPKRGGFESYQERVDGNEIRERSPSFGEYYSHPRLF
                     WLSQTPIEQQHIIDAFSFELGKVARAYIRERVVDQLAHIDVTLAQGVAHNLGFALTHE
                     QTQIAPPPDVNGLKKDPALSLYAVPDGDVKGRVVAILLNDKVNAAELLTIFQALKAKG
                     VHVKLLYSRMGEVTADDGSTLTIAATFAGAPSLTVDAVIVPCGNIADIESCGDARYYL
                     LEAYKHLKPIALAGDARRFKALLNIDSQGEEGLVEADNVDHHFMDTLLTLMAAHRVWS
                     RAGKINAIPA"
     gene            2474..2716
                     /gene="cedA"
                     /locus_tag="OQP62_003417"
     CDS             2474..2716
                     /gene="cedA"
                     /locus_tag="OQP62_003417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division activator CedA"
                     /protein_id="HCS1722871.1"
                     /translation="MMKPLRQQNRQIISYIPRVEPAPPEHAIKMDTFRDVWILRGKYV
                     AFVLTGESFQRSPAFSVPESAQRWANQVRQENEIAD"
     gene            complement(2819..4210)
                     /gene="tcyP"
                     /locus_tag="OQP62_003418"
     CDS             complement(2819..4210)
                     /gene="tcyP"
                     /locus_tag="OQP62_003418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine/sulfocysteine:cation symporter"
                     /protein_id="HCS1722872.1"
                     /translation="MNFPLIANIAVFVILLFVLAQARHKQWSLAKKVLVGLVMGVVFG
                     LALHTIYGADSQVLKDSIQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLG
                     KISFLTIGTLLFTTFIAALVGVLVTNLFGLTAEGLVQGGAETARLNAIETSYVGKVAD
                     LSVPQLVLSFVPKNPFADLTGANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLVA
                     IDTLQSWVMKLVRLVMQLTPYGVLALMTKVVAGSNLQDIIKLGSFVVASYLGLAIMFV
                     VHGILLGVNGISPLKYFRKVWPVLTFAFTSRSSAASIPLNVEAQTRRLGVPESIASFA
                     ASFGATIGQNGCAGLYPAMLAVMVAPTVGINPLDPVWIATLVGIVTVSSAGVAGVGGG
                     ATFAALIVLPAMGLPVTLVALLISVEPLIDMGRTALNVSGSMTAGTLTSQWLKQTDKT
                     ILDSEEDAELAHR"
     gene            complement(4347..4946)
                     /locus_tag="OQP62_003419"
     CDS             complement(4347..4946)
                     /locus_tag="OQP62_003419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460287.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS1722873.1"
                     /translation="MGFIMTAEGHLLFSIASAVFAKNAELTPALAHGDWWHIIPSAIL
                     TCLLPDIDHPKSFLGQRLKWVSKPIARAFGHRGFTHSLLAVFALLATFYLKVPDTWII
                     PADALQGMVLGYLSHIVADMLTPAGVPLLWPCRWRFRLPILAPRKGNQLERFLCMALF
                     AWAVWMPQSMPENNVIRWSSQMITILQMQFNRFINHQID"
     gene            complement(5084..5752)
                     /gene="hxpB"
                     /locus_tag="OQP62_003420"
     CDS             complement(5084..5752)
                     /gene="hxpB"
                     /locus_tag="OQP62_003420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HCS1722874.1"
                     /translation="MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDITRRH
                     ELPDTLRLRIDMVVDLWFAQQPWNGPDRQEVTNRVIARAITLIEETRPLLPGVREAVA
                     LCKAQGLLVGLASASPLHMLEKVLTMFELRDSFDALASAEKLPYSKPHPQVYLDCAAK
                     LGVDPLTCVALEDSVNGLIAAKAARMRAIVVPAEENQHDPRFALANVKLNSLTELTAA
                     HLLG"
     gene            5901..6437
                     /locus_tag="OQP62_003421"
     CDS             5901..6437
                     /locus_tag="OQP62_003421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YniB family protein"
                     /protein_id="HCS1722875.1"
                     /translation="MTYQQAGRIAILKRVVGWVIFIPALLSTLISVLKFMYAHSEKQE
                     GINAVMLDFTHVMIDMMRVNTPFLNVFWYNSPTPNFQGSLNIGFWLIFILIFVGLAMQ
                     DSGARMSRQSRFLREGVEDQLILEKAKGAEGLTREQIESRIVVPHHTIFLQFFPLYIL
                     PVIIIVLGYFFFSLLGFM"
     gene            complement(6480..7340)
                     /locus_tag="OQP62_003422"
     CDS             complement(6480..7340)
                     /locus_tag="OQP62_003422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructosamine kinase family protein"
                     /protein_id="HCS1722876.1"
                     /translation="MWQAISRLLSEQVGEGEIELRNELPGGEVHAAWHLRYAGHDFFV
                     KCDEREMLRGFTAEADQLELLSRSKTVVVPKVWAVGSDRDYSFLVMDYLSPRPLDAHN
                     AFILGQQLARLHQWSDQPQFGLDFDNALSTTPQPNTWQRRWSTFFAEQRIGWQLELAA
                     EKGITFGNIDAIVEHVQQRLASHQPQPSLLHGDLWSANCALGPDGPYIFDPACYWGDR
                     ECDLAMLPLHTDQPPQIYDGYQSVSPLPLDFLDRQPIYQLYTLLNRARLFGGQHLATA
                     QKAMDRLLAV"
     gene            complement(7447..7737)
                     /gene="ghoS"
                     /locus_tag="OQP62_003423"
     CDS             complement(7447..7737)
                     /gene="ghoS"
                     /locus_tag="OQP62_003423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type V toxin-antitoxin system endoribonuclease
                     antitoxin GhoS"
                     /protein_id="HCS1722877.1"
                     /translation="MASGDITRYVITVTFHEDSLTEINELNNHLTRSGFLLTLTDDEG
                     NVHELGTNTFGFVSAQSADEIKALVAGLAKSALDKDVDITVATWEAWSKNAQ"
     gene            complement(7834..>8751)
                     /gene="pfkB"
                     /locus_tag="OQP62_003424"
     CDS             complement(7834..>8751)
                     /gene="pfkB"
                     /locus_tag="OQP62_003424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase II"
                     /protein_id="HCS1722878.1"
                     /translation="TLTLAPSLDSATITPQIYPEGKLRCSAPVFEPGGGGINVARAIA
                     HLGGTATAIFPAGGATGEHLVALLADENVPVSTVDAKDWTRQNLHVHVESSGEQYRFV
                     MPGATLDDDEFRQLEEQVLEIESGAILVISGSLPPGVKVEKLTQLISAAQKQGIRCII
                     DSSGDALTAALALGDIELVKPNLKELSALVNRDLTQPDDVRKAAQELVQSGKARRVVV
                     SLGPQGALGIDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAQDASLEEMVRFGVA
                     AGSAATLNQGTRLCSHDDTQKIYAYLSAQ"
BASE COUNT         2101 a         2314 c         2318 g         2018 t
ORIGIN      
        1 ccgtttatgc aggaatcgcg ttaattttcc ccgcacgcga ccagacacgg tgtgccgcca
       61 tcagcgtcag cagagtgtcc ataaagtggt ggtcaacgtt atctgcctca acaagtcctt
      121 cttccccctg gctatcaatg tttaaaagcg ccttaaaccg tcgggcgtcg cctgccagtg
      181 cgatgggctt cagatgtttg taggcttcca gaaggtagta acgggcatcg ccgcaactct
      241 cgatatcggc aatattgccg cacggtacta ttaccgcatc gaccgttagc gacggcgcgc
      301 cggcaaaggt tgccgcaata gttaatgttg aaccgtcatc agccgttact tcccccatcc
      361 gtgaatagag cagttttacg tggacgcctt tggcttttaa agcctgaaaa atggtcaaca
      421 gttcggcggc gttaaccttg tcgttcagca gaatagcgac cactcggcct ttaacatcgc
      481 cgtccggcac cgcatacagg ctgagcgccg gatctttttt cagaccgttg acatcaggag
      541 gcggggcaat ttgcgtttgc tcatgggtga gtgcaaaacc gagattatgc gcgacgccct
      601 gagccagcgt gacatcaata tgcgctaact gatcgaccac ccgctcccga atatacgcgc
      661 gggcgacttt acccagctca aagctgaacg cgtcaataat atgctgctgt tctatcggcg
      721 tctgactgag ccagaacagg cgaggatgcg agtaatattc accgaaagag gggctgcgtt
      781 cgcggatttc attaccatcc acgcgttcct ggtatgattc gaagccgccg cgttttggcg
      841 ctggcggcgt ttcgcgtggc cagttgtcat taatggagtt tggttcatag ttcgccggat
      901 tggtgtcgat atccatccgg tgcataccgt cacgctggaa gttatggtag gggcaggtag
      961 ggcggttaat cggaatttcg tggaagtttg gcccgcccag acgactgatt tgcgtgtcgg
     1021 tataagagaa cagacgcccc tgtaacagcg gatcgttggt aaaatcaatg ccgggaacaa
     1081 tatgtcctgg atgaaatgcc gcctgttcgt tttcagcgaa aaagttatcc ggattacggt
     1141 ttaacaccat tttgccgacg cgttgtactg gcaccaactc ttccggaatc agtttggtcg
     1201 gatcgagcag atcaaaatcg aatttaaatt catcctcttc ggcaatgagt tgtaggccca
     1261 gctcgtattc cgggaaatcg cccgcttcga tggcctccca cagatcccgg cggtgaaaat
     1321 ccggatcgcg accggtcagt ttttgtgact catcccatac cagcgaggct ttacctgcca
     1381 acggtttcca gtggaaacgg acaaaggtcg ctttcccttg tgcattgatc agacggaagg
     1441 tgtgaatgcc gaacccttcc atcgtccgat aactccgtgg aataccgcga tccgatattg
     1501 cccacatgac gttgtgcagc gtctcaggct gtaaggaaac atagtcccag aaggtgtcgt
     1561 gcgcgctctg cccttgcgga atagcccaat gtggttcggg cttaacggcg tgcacaaaat
     1621 ccggaaactt atgcgcatcc tggataaaaa agatcggcgt gttattaccg acgagatcga
     1681 aaattccctc ttcggtataa aatttggtcg caaaaccgcg gatatcacgt acggtatcag
     1741 cagaccccgc gccgccctgt actgtcgaaa agcgaacaaa gaccggggta attttctgtg
     1801 gatcgcacag aaacgcggct ttcgtgatgt cgctcaggtc tttatatggc tggaaatagc
     1861 cgtgcgctgc agatccgcgg gcgtgaacga tcctctccgg gatacgctca tggtcaaagt
     1921 gggtaatttt ctcgcgcagg ataaaatctt ccaacagcgt agggccacgg ctgccggcgc
     1981 gaagagaatt ttgatcgtcg gcgatgcgca cgccctgatt ggtggtcagc gcataatttt
     2041 cgctgccttt acgaaaggcg tcgagggcgg tgagcttatc attcgcggtc tcgggcgctt
     2101 ttaagctgcc gggggccgtt ggttgcgcgc ccggcggcgt cggttctggc gtggggcgat
     2161 gtgaaccgtc tgacggtgcc agggagtcca ggccgggctg tgattcacgg gtatcatgca
     2221 cgggggactg atggggggat ttttcattat gcgacattga actcgtctcc tgctttcatc
     2281 actgaaatgg gcgtggtagt agtcaaaatc actctaacta tagaacattt cagcaattat
     2341 gccgggggag agcggaacgg cagacagggt acaacgggga aatcgcacgc gcggaacagg
     2401 acgtcggggg cgaagatcgg ctaaaatagt gtttttctga tttttagcct tagcctcttt
     2461 tagtgaagca ttaatgatga aacctcttcg ccagcaaaat cgccagatta ttagctatat
     2521 tccgcgtgtt gaacccgcgc cgccggaaca tgcgataaaa atggatacgt ttcgcgacgt
     2581 ctggatactg cgcggtaaat atgttgcctt tgttctgacg ggggagtcat ttcaacggtc
     2641 gcccgccttt agcgtgccag aatcggcgca acgttgggcg aatcaggttc gccaggaaaa
     2701 cgaaatcgct gactaagaaa aaaacaaaac gccggtactg gagaccggcg tttttagtga
     2761 cagacatttt gagttgccga tcgtcgtgtc tcagacgatg tgaactcccg ataatgtatt
     2821 atcgatgcgc cagttcagcg tcttcttcgc tatcgagaat ggttttatcg gtctgcttca
     2881 gccactggct ggtcagcgta cccgcggtca ttgagccgct cacgttcagt gcggtacggc
     2941 ccatatcaat caacggttcg acggagatta acagcgcgac cagcgtgacc ggtaagccca
     3001 tggcaggcag cacaatcagc gcggcgaagg tcgcgccgcc gccaacgccg gcaacacccg
     3061 ccgaacttac ggtaacgata cccaccagcg tggctatcca tacggggtct aaggggttga
     3121 tgccgaccgt cggcgcaacc attaccgcta acatcgcagg ataaagaccg gcacaaccgt
     3181 tttggccgat ggtcgcgcca aaagaggcag caaagctggc gatggactcc ggcacgccca
     3241 gacggcgggt ttgcgcttcg acattaagtg gaatggaggc ggcgctggag cggctggtaa
     3301 aggcaaatgt cagcaccggc cacaccttgc ggaaatattt cagcgggcta atcccgttca
     3361 cgcccaatag tatgccgtga accacaaaca ttatcgccag accaagatat gacgctacca
     3421 cgaagcttcc aagcttaatg atgtcctgca aattagagcc ggcaaccact ttcgtcatca
     3481 gcgccagtac gccgtaaggc gtaagttgca tcaccagacg caccagcttc atcacccagc
     3541 tttgcagggt atcgatagca acaagcacac gctcgccttt tggcgcatca tctttcagca
     3601 gtttaagcgc ggccacgccc aggaatgcgg cgaaaatcac cacgctgata atagacgtag
     3661 gatttgcgcc agtcagatcc gcaaacggat ttttcggtac aaaagacagc accagttgcg
     3721 gcacgctgag atcggccact ttgccgacat agctcgtctc aatggcattc agacgcgcgg
     3781 tttccgcgcc gccctgaacc agaccttccg ccgtcagtcc gaacagattg gtgaccagca
     3841 cgcccaccag cgctgcgata aaggtagtaa acagcagcgt gccgatagtc agaaaactga
     3901 ttttccccaa ttgagaggcg ttatgcagtc gtgccacggc gcttaaaata gaggcgaata
     3961 ccagcggcat cacaatcatt tgtagcaatt gcacataacc gttgccgaca atattgaacc
     4021 actgaatgga gtcttttaac acctgactgt cagcgccata aatggtgtgc agggccagac
     4081 caaagaccac gcccatcaca aggccgacaa gcactttttt agccagactc cactgtttat
     4141 gacgggcctg cgccagtaca aacagcagaa tgacgaacac cgcaatgttc gcaattaatg
     4201 gaaaattcat ccccgttctc ctgatttttt tattatgaag cgctgtgttt tagcgattct
     4261 gttcgcgcaa gattagcaga actgtgagct ggctcttata ttcaaatgga atggtttata
     4321 cctaaaatga ctttggcgtt gatttactaa tcaatctggt gatttataaa acgattgaac
     4381 tgcatttgca ggatagtgat catctgcgaa gaccagcgta tgacgttgtt ttccggcatg
     4441 gattgcggca tccacaccgc ccaggcaaac aacgccatac ataaaaatcg ctccagttga
     4501 ttgcccttgc gcggcgccag aataggcagg cggaaacgcc agcgacacgg ccacagtaag
     4561 ggaacgcctg cgggggtaag catatccgcg acgatatggc ttaaatagcc gagtaccatg
     4621 ccttgcagcg catccgccgg gataatccac gtatccggaa ccttgagata aaaggtcgcc
     4681 agtagggcaa agaccgccag cagactatgg gtaaaccccc ggtgaccgaa tgcgcgggcg
     4741 atcggtttcg atacccattt caggcgctga ccaagaaaag atttggggtg atcgatatcc
     4801 ggcagcagac aggtcaaaat agccgaagga ataatatgcc accagtcgcc gtgcgcaagg
     4861 gcgggcgtta actcggcatt cttggcgaaa accgcgctgg ctatagaaaa aagaagatgt
     4921 ccttccgccg tcatgataaa acccattaaa ctgtcaattc atacagtata gggtttttat
     4981 acagtaggcg gaagtggtga cgttgtaact ctttgtctct gtcaaagccg cttgccgtct
     5041 ggctcagcgg ctaattgccc gttgactttg tttcggaaac atcttaaccg agtagatgcg
     5101 ccgccgtcag ctctgtcagt gagttaagtt tgacattcgc cagcgcaaag cgcggatcat
     5161 gctggttttc ttctgctggc accacaatgg cgcgcattcg cgccgccttt gccgcgatta
     5221 aaccattcac cgaatcctcc agcgccacgc aggttaatgg atcaacgcct aatttggccg
     5281 cacaatccag atagacctgc gggtgcggtt tgctgtaggg caatttttcc gcagaggcca
     5341 gcgcgtcaaa actgtcgcgc agttcaaaca tggtgagcac tttttccagc atatgcagcg
     5401 gcgatgccga ggcaagcccc actaatagcc cctgcgcttt acacagcgcc acagcttcgc
     5461 gcacacccgg caaaagaggg cgcgtctctt cgataagcgt aatcgcgcgg gcaataacac
     5521 ggtttgtcac ttcctggcga tcggggccgt tccacggttg ctgcgcaaac cagagatcga
     5581 caaccatatc aatgcgtagc ctaagcgtgt ctggcagttc atggcgccga gtaatatcta
     5641 cgcctaaact tgccatcacg tccagttcag cgcgatccca gagcggttcg gaatcgatca
     5701 atagtccatc catatcgaaa attgcagcaa gaatttgacg tggggttgac atcacaacct
     5761 ctcctgttga gattaaaaaa taacgaatta agcgttcatt atgaccatgt tcttagtata
     5821 tcgcccttaa agatcaggcg aaaacgggaa tcaacaggta gacttaggcc aaaacgacgc
     5881 gtctttatca aggggaactc atgacgtatc aacaagctgg acgcattgca atcctaaaaa
     5941 gagttgttgg gtgggttatt tttattccgg cactgctttc cacgctcatc tcagtcctta
     6001 aatttatgta tgcgcacagt gaaaagcagg aggggataaa tgcggtaatg ctggatttta
     6061 cccacgtaat gatagacatg atgcgcgtga atacgccgtt tctgaatgtt ttttggtaca
     6121 actcgccgac gccgaatttt cagggaagcc tgaatatcgg tttctggctc atttttattc
     6181 tgatttttgt cgggctggcg atgcaggatt ccggcgccag aatgagccgc cagtcacgtt
     6241 ttttacgtga aggcgtggaa gatcagttga tcctggaaaa agcaaaaggc gcggaaggac
     6301 taacgcgtga gcagatagag tcacgtatcg tggtgccgca ccataccatc tttttacagt
     6361 ttttcccgct ctatattttg ccggtcatta ttatcgtgct cggctacttt ttcttttcct
     6421 tgttaggttt catgtaaact gaaaaatgcc ggatagcccg tatccggtgt gggctgtacc
     6481 tataccgcaa gcagccgatc catcgctttt tgcgcagtag ccaggtgctg accgccaaac
     6541 agccttgccc gattaagcag ggtgtagagc tggtaaatcg gctgcctgtc gagaaaatcc
     6601 agcggtagcg gcgaaacgga ctgatagccg tcataaatct gcggtggctg atcggtatgc
     6661 agcggcagca tcgccagatc gcattctctg tcgccccaat agcaggctgg atcgaagata
     6721 taggggccgt cagggccaag cgcgcagttc gccgaccata gatcgccatg caaaagagaa
     6781 ggctgcggtt gatgcgacgc cagacgttgc tgaacatgtt caacaatggc gtcaatatta
     6841 ccaaaggtaa tgcctttttc cgcggcgagt tcaagctgcc agccaatgcg ctgttcggcg
     6901 aaaaaagtcg accaacggcg ttgccaggta ttcggctgcg gcgtggtaga gagcgcgtta
     6961 tcaaaatcga ggccgaattg aggttggtcg ctccattggt gcaggcgcgc cagctgttgc
     7021 ccaagaataa acgcattatg ggcatccagc gggcggggcg agaggtagtc catgactaaa
     7081 aagctgtaat cccgatccga acctaccgcc cataccttag gcacaacaac ggttttactg
     7141 cgggagagca gctccagctg atcggcttca gcggtaaaac cgcgaagcat ttctcgttca
     7201 tcgcacttca cgaaaaaatc atggccggca taacgtaaat gccatgcggc atgaacttct
     7261 ccgcctggca gttcattacg cagttcgatt tcgccttcac cgacttgctc gcttaaaaga
     7321 cgactgatag cttgccacat aatgtctctc cccacgttgt ctgccagatc ataaggttag
     7381 cgcaaaaatg cggttaaaaa atacgaacta acgcacatcg cggacgcgcc gcggcgggaa
     7441 tggcacttat tgtgcgtttt tactccacgc ctcccaggtc gccacggtaa tgtcgacatc
     7501 cttatctaac gcgcttttcg caagtccggc gacaagcgct ttgatttcat cagcgctctg
     7561 agcgctaaca aagccaaacg tattggtgcc gagctcatgc acattccctt catcgtccgt
     7621 taatgtcagc aaaaaaccgc tgcgcgtcag atggttattg agttcgttaa tctcggtcag
     7681 ggaatcttca tggaaggtta cggtaataac ataacgggta atatcgccac tggccatcgt
     7741 tcacctcgtt gggagcaact gtgtttttaa cagcggcgga tgcgccgccc gttaaccgat
     7801 tttccggtat ccccctcggc gagggggaaa cgattattgc gcggaaagat aggcgtatat
     7861 tttttgggta tcgtcatgag aacacagacg cgtaccttga ttgagcgtag cggcgctgcc
     7921 tgccgccaca ccgaagcgca ccatctcttc cagcgacgcg tcttgcgcca gttttaacgt
     7981 catcgcgccc accatactgt cgcctgcgcc gacagtactt tgacttttca ccgggggagg
     8041 aacaacctgg atgcaattct cactgtctat gcccagcgcc ccttgcggcc ccagagagac
     8101 cactacccgg cgagccttgc cactttgcac taattcctgg gccgctttac gcacatcatc
     8161 aggctgcgtc agatcgcgat tgactaacgc gctcaattct ttcaggttag gtttcaccag
     8221 ttcgatatcg ccaagcgcca acgcagcggt gagcgcgtcg ccagagctat caataatgca
     8281 gcgaatgcct tgcttctgcg cggcggaaat cagttgcgtg agtttctcga ccttaacgcc
     8341 gggcggaagg ctgccgctga taaccagaat tgccccggat tcaatttcca gtacctgttc
     8401 ttcaagctgg cgaaattcgt catcgtccag cgtggcgccg ggcataacaa aacgatattg
     8461 ttcgccgctg gactcgacgt ggacgtgcag gttctgacgc gtccagtcct tcgcatcgac
     8521 ggtagacacg gggacatttt cgtcagccag tagtgcgacc agatgttcgc cggtagcgcc
     8581 gccagccggg aaaattgcgg tcgcggtgcc gccaagatgc gcaatggcgc gagcgacatt
     8641 aatacccccg ccgccgggtt cgaataccgg cgcggagcac cgcagtttac cttcgggata
     8701 aatttgcggc gtgattgttg cgctatcgag agagggcgca agcgtcaacg t
//
LOCUS       DAJVSD010000191         8576 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.191, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000191 DAJVSD010000000
VERSION     DAJVSD010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8576)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8576)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8576
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.191"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(97..924)
                     /gene="dkgA"
                     /locus_tag="OQP62_003425"
                     /pseudo
     CDS             complement(97..924)
                     /gene="dkgA"
                     /locus_tag="OQP62_003425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462080.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-didehydrogluconate reductase DkgA"
     gene            complement(1030..2193)
                     /gene="yqhD"
                     /locus_tag="OQP62_003426"
     CDS             complement(1030..2193)
                     /gene="yqhD"
                     /locus_tag="OQP62_003426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase"
                     /protein_id="HCS1722879.1"
                     /translation="MKNFKLHTPTRILFGKGAIVDLRDQIPQDARVLITYGGGSVKKT
                     GVLAQVQDALKGLDVREFGGIEPNPSYETLMKAVQLVRDESITFLLAVGGGSVLDGTK
                     FIAAAAQYTDGVDPWHILETGGTEIRSAIPMGSVLTLPATGSESNAGAVISRKTTGDK
                     QAFHSSFVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTYPVNGKIQDRFAE
                     GILLTLIEEGPKALQEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAM
                     HGLDHAQTLAIILPALWNEKRDVKRAKLLQYAERVWNITDGSDDERIDAAIAATRRFF
                     EQMGVPTHLSDYGLDGSTIPALLAKLEAHGCTNLGENQDITLDVSRRIYEAAR"
     gene            2386..3285
                     /locus_tag="OQP62_003427"
     CDS             2386..3285
                     /locus_tag="OQP62_003427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001407451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HCS1722880.1"
                     /translation="MNREAICLQLADKINHLKNNDKIISERLAGIRLLYGVEPGPRTP
                     VMYQPGIIFLFSGHKIGYINKRKFRYDANEYLLLTVPLPFECETWATPEVPLAGIRLD
                     IDVLQLQELLMDIGEDERFQLPMAASGINSATLSDEILCAVERLLDVMEHPLDARILG
                     KQIIREILYHVLMGPRGGALLALVSRQTHFSLISRVLKQIEMKYTENLNVEQLAAEAN
                     MSVSAFHHNFKAVTSTSPLQYLKSYRLHKARMMMIHDGMKASAAAMRVGYESASQFSR
                     EFKRYFGVTPGEDAARMRTMQGS"
     gene            complement(3349..4008)
                     /locus_tag="OQP62_003428"
     CDS             complement(3349..4008)
                     /locus_tag="OQP62_003428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1722881.1"
                     /translation="MAVIQDIIAALWQHDFAALANPHVVSVVYFVMFATLFLENGLLP
                     ASFLPGDSLLLLAGALIAQDVMHFLPTIGILTAAASLGCWLSYIQGRWLGNTRTVKGW
                     LAQLPAKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLSNRRFQFFNWLS
                     GLLWVTVVTSFGYALSMIPFVKRHEDQVMTFLMILPVALLVAGLLGTLVVVIKKKYCN
                     A"
     gene            complement(4148..5335)
                     /gene="metC"
                     /locus_tag="OQP62_003429"
     CDS             complement(4148..5335)
                     /gene="metC"
                     /locus_tag="OQP62_003429"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HCS1722882.1"
                     /translation="MTDKQLDTKLVNAGRSKKYTLGSVNSVIQRASSLVFDTVEAKKH
                     ATRNRANGELFYGRRGTLTHFSLQEAMCELEGGAGCALFPCGAAAVANTILAFVEQGD
                     HILMTNTAYEPSQDFCSKILGKLGVTTSWFDPLIGADITQHIQPNTKVVFLESPGSIT
                     MEVHDIPTIVSAVRRVAPDAVIMIDNTWAAGVLFKALEFDIDISIQAGTKYLIGHSDA
                     MVGTAVANARCWEQLRENAYLMGQMLDADTAYMTSRGLRTLGVRLRQHQESSLKIAAW
                     LANHSQVARVNHPALPGSKGHAFWKRDFTGSSGLFSFVLNKKLTEAELSAYLDNFSLF
                     SMAYSWGGYESLIIANQPEQIAAIRPAGGVDFTGTLVRVHIGLESVDDLIADLAAGFA
                     RIV"
     gene            5587..6321
                     /gene="exbB"
                     /locus_tag="OQP62_003430"
     CDS             5587..6321
                     /gene="exbB"
                     /locus_tag="OQP62_003430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HCS1722883.1"
                     /translation="MGNNLMQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSK
                     SVEFFTQKRRLKREQLQLADARSLDQASDIAAGFSAKSLSAQLINEAQNELELSQGSE
                     DNEGIKERTGFRLERRVAAVGRYMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIA
                     QTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNIFARQIGSYKATLGDVAAQVLL
                     LQSRDLDLNASASAQPVRAAQKLRVG"
     gene            6328..6753
                     /gene="exbD"
                     /locus_tag="OQP62_003431"
     CDS             6328..6753
                     /gene="exbD"
                     /locus_tag="OQP62_003431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HCS1722884.1"
                     /translation="MAMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVD
                     VKVNLPASTSTPQPRPEKPVYLSVKADNTMFIGNDPVTDDTMIAELTALTEGKKDTTI
                     FFRADKTVEYETLMKVMDMLHQAGYLKIGLVGEETAKAK"
     gene            complement(6866..7750)
                     /locus_tag="OQP62_003432"
     CDS             complement(6866..7750)
                     /locus_tag="OQP62_003432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1722885.1"
                     /translation="MSHLYDPTTQYYTGEYPKQKQPAPGVQAKMTPVPDCGEKSYVGS
                     GRLKDRKALVTGGDSGIGRAAAIAYAREGTDVAINYLPAEEEDAQQVKALIEECGRKA
                     VLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVN
                     VFALFWITQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVA
                     EKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQE
                     SSYVTAEVHGVCGGEHLG"
     gene            complement(7874..8278)
                     /locus_tag="OQP62_003433"
     CDS             complement(7874..8278)
                     /locus_tag="OQP62_003433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoplasmic protein"
                     /protein_id="HCS1722886.1"
                     /translation="MKEVEDNNVYLALDNHKSDEFILKQNLAALIASKNATLEKVTQE
                     VVSIPAALVRLKWQNRREMYALQVKEEIYGATINAIIEQHPELRDKIMSRLESDWQHL
                     LARETATLRLTRKLSDGDYRTRNVTTVARQEK"
     gene            complement(8265..>8576)
                     /locus_tag="OQP62_003434"
     CDS             complement(8265..>8576)
                     /locus_tag="OQP62_003434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722887.1"
                     /translation="LSDYEPDILICANATGQHRNVLFEERDRHIKERLYCVAKIETFA
                     RLINALQAEGDIDAQTLSKILADKTAMINEKGNAIWLNLITRETNMPLFYSLEDKDER
                     S"
BASE COUNT         1999 a         2188 c         2285 g         2104 t
ORIGIN      
        1 gaaatatact gttaaatgcg cgtaattgtt tcttaatgtt tcggaatgca aaaaagcccg
       61 acgacatcgt cgggcatggc gtgcgataaa tccggcttaa ccgccggact gatccggatc
      121 gggcccgagg cgttttcctt gatccagttt tgcgatctcg cctaattcat ctttatcgag
      181 acggaaatcc cagacagcaa agttttccgc gatacgggaa ggagtgacgg atttcggaat
      241 gactaccagc ccgcagtcca gatgccagcg aataacaatc tgggcgggcg ttttgccgta
      301 tttatccgcc agttcgcgaa tcactttctg atcgaatacg ccttcgccgc cctgcgccag
      361 cgggctccag gactcggtct ggattttatg cgtcgcattc tacgcatgta gctggcgctg
      421 ttgcatcaag gggtgaagct cgatctggtt gatcacaggg ggaacgccgg tttcatcgat
      481 cagacgctgg aggtgatgga tctgaaagtt acagaccccg atactcttta ccagcccctc
      541 tttttgcagc gcgatcatgc ccttccaggc gtcgacatag tgatcgatag ccggtacggg
      601 ccagtgcatc agatagagat cgagataatc aagttgcagt tttttcagac tctcctgcag
      661 ggcttcgcgg ggacgttttt gatcgtcatt ccacaactta gtggtgataa acagctcttc
      721 ccgcgccacg ctcgctgctt ttagcgcttt gccgacgcct tcttcattct gatatgctgt
      781 ggcggtatca atcgatcgat agcccacctc cagcgcttta tgaatcgccg cgatcacctc
      841 ttcattgctt gctttccaga ctcccagccc aagttgtggc attacgttgc catcctgtag
      901 cctgataatg gttggattag ccatgatgtg ttcctctttt aattggctcg ccggagtcgg
      961 gtccggcgag actaagtgac ttaagtctgg acgaaatggc caaaaacgaa agtcagaggc
     1021 gaaaaaacct tagcgcgccg cttcataaat ccgacggctg acatccagcg taatatcctg
     1081 attttcacct aaatttgtgc atccatgcgc ctcaagtttg gccagtagcg ccggaatagt
     1141 gctgccatcc agaccgtaat cggacaggtg ggtaggcacg cccatctgtt cgaagaaacg
     1201 gcgggtggcg gcaatggcgg catcaatacg ctcgtcgtcg gaaccgtcgg tgatattcca
     1261 tacacgttca gcgtattgca ggagttttgc gcgtttaacg tctcgttttt cgttccatag
     1321 cgcaggcaga atgatagcca gcgtctgggc atgatcgaga ccgtgcatcg ccgtaagctc
     1381 atggcccagc atatgcgtcg cccagtcttg cggaacacca gcgccaatca ggccattcaa
     1441 tgcctgagta gcggcccaca tcacgttagc gcggacgtca tagttttcag gctcttgcag
     1501 cgctttggga ccttcttcga tcagtgtgag taaaatacct tcggcgaaac gatcctgaat
     1561 tttgccgtta acggggtaag tgacgtactg ctcaacggta tggacgaaag catccacgac
     1621 gccgttcgca acctggcgcg gcggcaatgt ataggtgtag accgggtcca gtacggcaaa
     1681 caccggttgc acgaacgagg agtggaaggc ctgtttgtcg ccagtagttt tacgggaaat
     1741 gactgcgccg gcgttcgatt ctgagccggt tgccggtagg gtcagcacag accccatcgg
     1801 gattgcgcta cgaatctcag taccgccggt ttccagaatg tgccacggat cgacgccgtc
     1861 cgtatactgc gccgctgcgg cgataaattt ggtgccgtcc agtacggaac cgccgccaac
     1921 ggccagcagg aaggtaatac tttcgtcgcg cacaagctgc acggccttca tcagcgtttc
     1981 ataggacggg ttcggttcaa taccgccaaa ctcccgaaca tccagtcctt ttaacgcgtc
     2041 ctgaacttgc gccagtacgc cggtcttttt cacgctaccg ccgccatagg taatcagcac
     2101 gcgggcgtcc tgcgggatct gatcgcggag atcgacgata gcgcctttac caaacagaat
     2161 gcgggtaggg gtatgtaatt tgaaattttt cattgctcat tcccttatgt gggtaaaaag
     2221 agggcaggcg gctgtctgcc tgatggtcat cattgtggtc ttgtgagaga tgtctctcaa
     2281 tgcacatttc tgccaatgtt ttgcctattt ctccagaatg ctggagaaaa tcgctaaaaa
     2341 tgcgcacaat ccagcggagt ggatttgata aaaaaatggc gcgttatgaa tcgtgaagca
     2401 atttgcttac agttggctga taaaattaat catttaaaaa ataatgataa aataatcagc
     2461 gagcggctgg cgggcattcg tctgttgtat ggtgttgaac cggggccgcg cacgccggtc
     2521 atgtatcagc ctggcatcat atttctcttt tccggccata aaattggcta tattaacaag
     2581 cgcaagtttc gttatgacgc taatgaatat ctcttactga ccgtgccgct cccttttgaa
     2641 tgcgagacct gggcgacgcc ggaggtaccg ctggccggta ttcggctcga cattgatgtg
     2701 ctgcaactgc aagagttgct catggacatt ggcgaagatg agcgtttcca gttgccgatg
     2761 gcggccagcg ggattaactc cgccacgctg tcggacgaga ttttatgcgc ggtggaaaga
     2821 ttgttggatg tgatggagca cccgctggat gcgcggattc tgggaaaaca gattattcgc
     2881 gaaattcttt atcatgtgct gatggggccg cgcggcgggg cgctgcttgc gctggttagt
     2941 cgccagacgc actttagcct gatcagtcgc gtacttaaac agatcgaaat gaaatacacc
     3001 gagaacctga atgttgagca actggcggca gaagcgaaca tgagcgtgtc ggcgtttcac
     3061 cataatttta aggcggtcac cagcacctcg ccgttgcagt atttaaaaag ctaccgactg
     3121 cataaagcgc ggatgatgat gattcacgac ggtatgaagg ccagcgccgc ggcgatgcgg
     3181 gtcggctatg agagcgcatc gcagtttagc cgggagttta aacgttattt tggcgttacg
     3241 ccgggcgaag atgcggcaag aatgcggaca atgcaaggga gctaagtggg gcatcccgcc
     3301 acggggcaac gaagcgtaac cgggccatcc tggccgatta tggatacgtc aggcgttaca
     3361 gtatttcttt ttaatcacca cgaccagcgt acctaacagc ccggcgacca gtagcgcgac
     3421 gggaaggatc attaaaaatg tcattacctg gtcttcatgg cgcttaacaa acgggatcat
     3481 actgagcgcg tagccgaagc tggtcacgac agtcacccac agcaggccgc ttaaccagtt
     3541 aaaaaactga aaccggcggt tggacaggcc ggaaatgccc gccattgttg gcagcagcgt
     3601 gcggacaaac gccagaaagc gcccggcaag caacgctaac aaaccgtgac ggtcaaacat
     3661 gcaggtggcg cgctgatgat attttgccgg aagctgcgct agccagcctt tgacggtacg
     3721 cgtattaccg agccagcgtc cctggatata acttagccag cagccgagac tggccgcggc
     3781 ggtgagaatg ccaatcgtcg gcaaaaaatg catcacatcc tgggcgatca acgcgcctgc
     3841 cagtagcagc agactatcgc cgggtaagaa tgacgctggc agcagaccgt tttctaaaaa
     3901 tagcgtggcg aacatgacaa agtagacgac gctaacaacg tgtggattcg ccagcgcggc
     3961 aaaatcatgt tgccagagcg cagcgataat atcttgaatg acagccatga actttcctgt
     4021 ggaacagcat ttacgctttt atctgcctat tgtactcctg aatcgtccgg gatgccttga
     4081 tcccggacgc aacaaacgca gacttttcca cggaaattgt ctgcatatat gtccatccac
     4141 ggcaacttta cacaattctg gcgaagccgg cggctaaatc agcgatcaaa tcatcaacac
     4201 tctctaaacc aatatgcact cgaaccagcg taccggtaaa atctacgccg cctgcgggac
     4261 gaatcgcggc gatctgttcc ggctgattag caataatcag cgattcgtag cctccccagg
     4321 agtaggccat actgaacagc gaaaagttat ccagataggc tgataattct gcctcggtca
     4381 gctttttatt gagcacaaag gagaacaggc cgctgctgcc tgtaaagtct cgtttccaga
     4441 acgcatgacc tttgctaccc ggcagggccg gatgattaac gcgcgcgacc tgagaatggt
     4501 tcgccagcca cgcggcgatt ttgaggctgc tttcttgatg ctggcgcagt cggacgccga
     4561 gcgtgcgcag accgcggctg gtcatataag ccgtgtcggc gtcgagcatt tgccccatca
     4621 gataggcgtt ttcccgcaat tgttcccagc agcgcgcatt tgcaacggca gtaccgacca
     4681 tcgcatcaga atgaccaatt agatacttag tgcccgcctg gatagagata tcaatatcga
     4741 attccagagc tttgaacaga acgccagccg cccaggtatt atcaatcatg atgacggcgt
     4801 ctggcgcgac gcgtctgacc gcactaacaa tggtcggaat atcatgtact tccatggtaa
     4861 tagaaccggg ggattccaga aatacgactt tcgtgttcgg ctgaatatgt tgcgtgatat
     4921 cagcgccgat gagcgggtcg aaccagcttg tcgtcacgcc cagtttgccg agaattttgc
     4981 tgcagaaatc ctggctgggt tcataggctg tgttggtcat caggatgtgg tcgccctgtt
     5041 caacgaatgc cagaatggtg ttggcgaccg ccgccgcacc gcacgggaag agcgcgcatc
     5101 cggcgccgcc ttccagttca cacatggctt cctggagcga aaagtgagtc agcgttcccc
     5161 ggcgtccgta aaataattcg ccgttggcgc gattgcgggt agcgtgtttt ttggcctcga
     5221 cggtgtcaaa caccagtgaa gaagcgcgtt gaatcacact attcactgag ccaagcgtgt
     5281 attttttgct gcgtcctgcg tttaccagtt tggtatccaa ctgtttatcc gtcatgttgc
     5341 gtttcctgat tttaaccgtc tggatgtcta aactagcatg aatataacca tctgcaccct
     5401 ggcgatgtgt gatacagatg aaaattttgc caaaataaaa acaggtggct tttttaatgc
     5461 gtaagcgcaa agaaaaagca gtaaaggtgc ggcagtatgt aaatagtaat gagaacgact
     5521 atcaattcga cgttgttttg atattattat gctcagattt tgtgatttgc gtcctggaga
     5581 tacagagtgg gtaataattt gatgcagacg gatctttccg tctggggcat gtatcagcac
     5641 gccgatattg tcgtgaagtg cgtgatgatt ggtttgattc tggcgtcagt cgtcacctgg
     5701 gctatcttct tcagtaaaag cgttgaattt ttcacgcaaa agcgccgctt aaagcgcgaa
     5761 caactgcaat tagccgatgc gcgctcttta gatcaggctt ccgacattgc ggcaggtttc
     5821 agcgcaaaaa gcctcagcgc acagctcatc aatgaagcgc agaatgaact ggaactctct
     5881 cagggcagcg aagataacga agggattaaa gaacgtaccg gcttccgtct ggaacgtcgc
     5941 gtcgcagcgg ttggccgcta catgggacga ggcaacggtt atctggcgac gatcggcgcc
     6001 atttccccct tcgtcgggtt gtttggcacc gtatggggca ttatgaatag cttcatcggt
     6061 attgcgcaaa cgcagaccac caacctggcg gtggtcgctc ctggtattgc ggaagcgctg
     6121 ctggcgacgg cgattgggct ggtagccgcg atcccggcgg tcgtcattta caacatcttc
     6181 gcacgtcaga taggcagtta caaagcgacg ctgggcgacg tggcggcgca ggtattgctg
     6241 ctgcaaagcc gcgatcttga tctgaatgcg agcgccagtg cgcagccggt acgcgccgcg
     6301 cagaaattac gggtagggta atgcgtcatg gcaatgcgtc ttaacgagaa cctggatgac
     6361 aacggcgaaa tgcatgaaat caacgtgacg ccgtttatcg atgtcatgtt ggttctgctg
     6421 attatcttta tggtggctgc gccgctggcg acggtggacg tcaaggtgaa tctgcccgct
     6481 tctaccagta cgccacagcc gcgtccggaa aaaccggttt atctgtcggt gaaagcggat
     6541 aacaccatgt ttatcggtaa cgatccggtg acggatgata cgatgattgc cgagctaacg
     6601 gccctgacgg aagggaaaaa ggatactacg attttcttcc gtgcggataa aaccgtagag
     6661 tatgaaaccc tgatgaaagt gatggatatg ctgcatcagg cgggctatct caagattggt
     6721 ttggtcggcg aagagaccgc gaaagcgaaa taagtattct gctgatgctg taggccgggt
     6781 aaggcgaagt cgccacccgg cttttttatt gcctaagatg gcgccttgct taacagaatt
     6841 gcgccacctt aatcgacttc atgcgttagc ctaaatgttc cccgccgcac acgccgtgca
     6901 cttctgcggt aacgtaactt gattcctggc ttgccagata gacatacacc ggcgccagct
     6961 ctgccggttg accggcccgc ttcattggcg tctgctggcc aaactgcgga attttatcct
     7021 gtgtttggcc gccggaaatt tgcagcgctg tccagatagg gccaggcgcg acaatattca
     7081 cgcgaattcc tttttccgcc acctgtttcg ccaggccgcg gctgtaatta aggattgccg
     7141 ccttggttgc cgcataatcc agcaggtgcg gactgggctg ataggcctgg atagacgacg
     7201 ttgtgataat actggcgcct tttggcagca gcggaatcgc ttcctgggtt atccagaaca
     7261 gggcaaaaac gttaacggcg aaggtttgct gaaattgctc gctggttaga tcttttatct
     7321 ccgggattgc cgtctgttta ccggctacca gcgccagaat gtccagcccg cccagcgctt
     7381 cgcgcgcctt atggaccagc gaacgggcga aagattcgtc gctaagatcg cccggcaata
     7441 acaccgcttt acggccgcac tcctcaatca gcgctttaac ctgctgggcg tcctcttctt
     7501 ccgctggcag atagttgatc gcgacatctg tgccttcacg cgcgtaagcg atagcggcag
     7561 cgcgcccaat cccggagtcg ccccctgtca ccagcgcctt acgatcttta aggcgaccac
     7621 tgccgacata acttttttca ccacagtcag gaacaggcgt cattttcgcc tggacgccgg
     7681 gcgccggctg tttttgctta ggatactcgc cggtgtaata ctgcgtggta gggtcgtata
     7741 gatgagacat tgagcttctc ccttcaggtt gaacaccctt taagcgtaga cacttttact
     7801 accgtaagag ggagaatcag aacgatcctt atgcttcgcc cgtattcaca acagagttaa
     7861 ctagctatga aggttatttt tcttgccgtg cgactgtggt gacgttgcgc gtccggtagt
     7921 cgccatcgga aagcttacgc gtcagacgta aggttgccgt ctcgcgagcc agcagatgct
     7981 gccagtcact ttcaagacga gacataattt tgtctcgtaa ttcaggatgc tgctcgataa
     8041 tagcattgat ggtcgcgcca taaatctcct ctttgacctg taacgcatac atctctcgtc
     8101 ggttttgcca cttcaggcgc actaacgccg ccggtatgga taccacttcc tgcgttacct
     8161 tttccagagt ggcattttta ctggcgatta gcgctgcaag attttgcttt aagataaatt
     8221 catcactttt atggttgtct aaagccaaat aaacgttatt gtcttcaact tctttcatct
     8281 ttatcttcca gtgaataaaa tagcggcata ttggtttcgc gagtgattaa attaagccaa
     8341 atggcattac ctttttcatt tatcattgcg gttttatccg ccagtatttt acttagcgtt
     8401 tgggcatcaa tatcgccttc tgcctgtagt gcgtttatca ggcgggcaaa cgtttcaatt
     8461 ttagccacac aatacagacg ttctttaata tgacggtcgc gttcttcaaa taatacgttt
     8521 ctgtgttgcc cggttgcgtt agcgcaaatt aaaatatcgg gctcgtaatc gctgag
//
LOCUS       DAJVSD010000192         8518 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.192, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000192 DAJVSD010000000
VERSION     DAJVSD010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8518
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.192"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            241..783
                     /locus_tag="OQP62_003435"
     CDS             241..783
                     /locus_tag="OQP62_003435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein BcfA"
                     /protein_id="HCS1722888.1"
                     /translation="MKKPVLALMVSAIAFGGMLSTAQADTTTVTGGTVNFVGQVVDAA
                     CSVSADSVDQTVTLGQVRASKLTEAGMAANQKEDFTIKLEDCDTQTSQNAAVIFNGQQ
                     DANQPGSLANTAGAGSATNVALQLYGPDGQALNIGESSSTVTLNDGENVIPLSVDYIA
                     TGTATAGNVTATATFSMVYS"
     gene            884..1570
                     /gene="bcfB"
                     /locus_tag="OQP62_003436"
     CDS             884..1570
                     /gene="bcfB"
                     /locus_tag="OQP62_003436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis chaperone BcfB"
                     /protein_id="HCS1722889.1"
                     /translation="MKKNVPIFLRLLLLLSAAGLSFAVQAGGIALGATRVIYPQGSKQ
                     TSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGPSLP
                     TDRESVFYLNSKVIPSVDKNKLTGNSLQIATQSVIKLFIRPKNLAEAPAHAPATLRCR
                     NERGQLTITNPSPYYVSMVELYSAGKKLPNTMVPPKGAITLPATPGQVSLRTVNDFGA
                     TTPARVCPAS"
     gene            1575..4196
                     /gene="bcfC"
                     /locus_tag="OQP62_003437"
                     /pseudo
     CDS             1575..4196
                     /gene="bcfC"
                     /locus_tag="OQP62_003437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459028.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial usher BcfC"
     gene            4197..5204
                     /locus_tag="OQP62_003438"
     CDS             4197..5204
                     /locus_tag="OQP62_003438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein BcfD"
                     /protein_id="HCS1722890.1"
                     /translation="MKIPLLFALLAGSVVSQYAHADVCKNVNGVPSSINYDLTTTLTA
                     EQNQVGKTVQLEKSQEVNVQAVCPAGASTYSQTYRSYVSPYPVVETSGNWKYLKLDPD
                     YLEGGMRIEDSSAGDIYPPMNNVLMGYDENVKAGQPFYVRDSNLEFQLKIVKPFVGTV
                     NISPKTMFNVYVMTAAGDPLTDVVYSILYSGTVTVPQSCEINAGQTILVNFGALYSGN
                     FNHAGQKPEGVRAKKFSVPVKCSGLDSQVNLTMRLIATPDSHFPQAIASDNADVGVVV
                     ETDEGNALIPNDVQSVAPFITDSAGRANITLQAYPVSTTGETPAEGAFTALASLRVDF
                     D"
     gene            5205..5750
                     /locus_tag="OQP62_003439"
     CDS             5205..5750
                     /locus_tag="OQP62_003439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein BcfE"
                     /protein_id="HCS1722891.1"
                     /translation="MNRSHCALFVMGLILCPQINASADDLAYNLEFTGTIVAQTCDID
                     ISSLSQSIDLGQFAVGDFPSTGTTTKFKPFNINLKNCSRGITGAKIWFTGEPDPDNPA
                     LLAITDTGMGSGNMLASGVGVEILNDDQDTISINNADSVVYPLKAGRNTLSFYIRYKS
                     TRPTVTSGNATAVMYFDMQYE"
     gene            5766..6284
                     /locus_tag="OQP62_003440"
     CDS             5766..6284
                     /locus_tag="OQP62_003440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein BcfF"
                     /protein_id="HCS1722892.1"
                     /translation="MRNDILYGIGMLLAASGVQAHDGRVYVSGTITDNTCSLSPGSEN
                     INVAMGAVSQRQFYRAGDGSAWQPFAIDLQNCGSTASGVTVSFSGAGDSRNTDLLALT
                     AGESDASGIGIALYDQNKTLIPLGQESDVVTLSPGQASAHLQFYARYLADGGTVTPGD
                     ANASATFILAYE"
     gene            6250..6981
                     /gene="bcfG"
                     /locus_tag="OQP62_003441"
     CDS             6250..6981
                     /gene="bcfG"
                     /locus_tag="OQP62_003441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone BcfG"
                     /protein_id="HCS1722893.1"
                     /translation="MPPQPSFLPMNKFFLHCAIYWCLLPISWAQAGVVIGGTRFIYHA
                     GAPALSVPVSNHSEASWLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSM
                     RVVYTGGPLPADRESLFTLSIAAIPSGKPEANRVQMAFRSALKLLYRPEGLAGNPQQA
                     YRHLIWSLTPDGATVRNPTPYYVTLFLLRANERAQDNAGVVAPFATRQTDWCRHAVRC
                     TVRWQSINDYGRVMTAQTVDLTRIH"
     gene            7046..7891
                     /locus_tag="OQP62_003442"
     CDS             7046..7891
                     /locus_tag="OQP62_003442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HCS1722894.1"
                     /translation="MYYHALKLSRLAMLTLAGVAVSASAIAADSAPTSQIGPTAEAYI
                     VSHPDKVGEVVATYLAEHPEFLVAASETLHQRQQIAQQQAYVQLALQYRAELLSSSSP
                     SVGPSEAKAAVVMFFDYQCSWCSKMAPVVENLIKANPDTRFIFKEFPIFSSRWPVSGL
                     AARVGEQVWLTQGGAKYLDWHNALYATGKVEGALTEHDVYTLAQHYLTPTQLAAVKEA
                     QSSGAVHDALLTNQALAQHMDFSGTPAFVVMPQTQNGDVKRVTVIPGSTTQDMLQMAI
                     QKAKG"
     gene            7930..8217
                     /locus_tag="OQP62_003443"
     CDS             7930..8217
                     /locus_tag="OQP62_003443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000839835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722895.1"
                     /translation="MKSMRCVIPVILLSFIVHEGTAKPTAQIHFMGSVVEAGCWNDVG
                     TLEIQCYNKEGVERYIIVENIITPISSPHATVKRDYLDEDKQLTVLRIVYD"
     gene            complement(8317..>8518)
                     /locus_tag="OQP62_003444"
     CDS             complement(8317..>8518)
                     /locus_tag="OQP62_003444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1722896.1"
                     /translation="QQIGLFELFVTLPRQGIKIDERFIIDAADIPPQAIQYHTHRCNK
                     IISIGIPTLFLLIVLFFLAPFI"
BASE COUNT         2091 a         2090 c         2297 g         2040 t
ORIGIN      
        1 atgtcgatga ttgcaacttg ccgttggctt gctaataatt aataacatcg ttatctcatt
       61 ataacgtaaa gattaactca cgacgttgag tagctgtttt attgcctctg acatttatat
      121 cagaacaaga agacactttt ttcgcataag aaaagtcgtg atattgctgt gaagaaatat
      181 cagcagccgt ttcgttaaaa aatctgatta ccctcatttt tatatttaaa aggagcttga
      241 atgaaaaagc ctgtactagc attaatggtc tctgccattg cctttggcgg aatgttgtcc
      301 accgcgcaag cggatactac aaccgtcact ggcggtacgg taaattttgt cggacaggtc
      361 gttgacgccg cctgttctgt ttccgctgac tctgtcgatc agaccgtgac attaggccag
      421 gttcgcgcca gtaaattaac cgaggccggt atggcggcga atcaaaaaga agatttcacc
      481 attaaactgg aagactgcga tactcagacc agccagaatg cggcggtgat ttttaatggc
      541 cagcaggacg caaaccagcc gggttcgctg gcgaataccg ctggggcagg ttcggcgacg
      601 aatgtggcac tacaacttta tggaccggat ggccaggcgc tgaatattgg tgaatcgtcc
      661 agtactgtta ccttgaacga tggcgaaaac gttattccgc ttagcgtgga ttatatcgct
      721 accggtacgg cgactgccgg taatgttacc gcgacggcga catttagcat ggtttattcc
      781 tgattcctta tcgggatttt tttctcgtct gttgggaggc gagaaagggg cgttacgcgc
      841 gtcactgcgc gtaacaaacc gacggcatca ggatattacg cagatgaaaa aaaacgtacc
      901 gattttcctt cgattattgc tactgctgtc ggcggccggc ctgtcgtttg ccgtgcaggc
      961 gggaggcatt gcgctgggcg cgaccagggt gatttatccg cagggaagta agcaaacctc
     1021 cttgccgatt attaattctt ctgccagcaa tgttttttta attcagtcgt gggtcgccaa
     1081 tgccgatggt tcacgctcga cggattttat cattacgccg cctctctttg tgatccagcc
     1141 taaaaaagaa aatatattac gtattatgta tgtcgggccg tcattaccga ccgatcgcga
     1201 aagcgtgttt tatttaaaca gtaaagtgat accctctgtc gataaaaata aactgaccgg
     1261 caactccctg caaattgcga cgcaaagcgt gattaagcta tttatccgcc cgaaaaatct
     1321 ggcggaggcg ccagcccatg ccccggcaac gcttcgctgc cgtaacgagc gcggccagct
     1381 aacgattact aacccttcgc cgtactacgt ttcgatggtt gaactgtaca gcgcggggaa
     1441 aaaactgccg aatactatgg taccgccgaa aggcgcgatc actctcccgg cgacgcctgg
     1501 ccaggtatct ttgcgcacgg taaacgattt tggcgcaacg acgccagcac gcgtttgtcc
     1561 agcttcatga tgttatgcgt aatcagcttt tcatgacgcg atattactcc agcgtagcta
     1621 aacccgtatt aactccgctg gcgttggcta tcgcactggc gcctgcgcct gggtgggcgg
     1681 aaaactattt caacccggca tttctgtctg acgacccgtc tgcggtggcc gacttatcga
     1741 ccttttcccg taatgcccag gcggcgggaa tgtatcgcgt tgacgtttac ctgaacaata
     1801 cgtttctcgc gaccagagac attgccttcc aggcggtgaa gacgacggga aaaagcgcgc
     1861 ccaccgatga cagcggatta cgcgcctgcc tgacgcctga aatgcttaaa aatatggggg
     1921 taaacaccgg ggcatttcca ctgttggcga aggcggcggc gggaagttgt ccggatctcg
     1981 ccagtgcgat accggccgcc cggacccgct ttgattttgc gcagcaacgt ctcgacatta
     2041 gcatcccgca ggcggcgatg gttgccagcg ccagaggcta tatcccaccg caatactggg
     2101 atgaaggtat taacgcgttg ctattgaatt acacctttac cggcgcgaat agtcaggatc
     2161 ggagcccagg cggcagtgcg gagaacagct attttcttgg attgaatagc ggccttaatc
     2221 tgggggcctg gcggttacgc gactactcca catggaacgc gaatagcggc gatcagaata
     2281 gcgacagcga ctggcagcac atcagtactt atctggaacg tgatgtggtc tttttgcagg
     2341 gagaactgac ggcaggcgat agttataccc cctccgcatt attcgatagc cttccttttc
     2401 gcgggctaca actggcgtct gacgacaata tgttgccaga cagcatgaag ggcttcgcgc
     2461 cgaccattca cggcattgcc agaagcaacg tgtaagtgac cattcggcaa aacggctaca
     2521 tcatcaatca gcgctatgtg ccgcccgggg catttactat taatgatctc tatcctaccg
     2581 ccgccagcgg cgatttgact gtggaagtca aagagtccga cggttctatt aatcgctata
     2641 acgtgcccta ttccgccgtg ccgattctac aacgagaagg gcggctgaag tatgcggcga
     2701 cggtggcgga gtatcgtagc gatagtagtc aaaaagagaa ggtgaaattc agtcaggcga
     2761 ccttgatatg ggggttaccg catggtttta cgctgtatgg cggaacacaa ctttccagtc
     2821 attatcacgc gctggcgatc ggcagcggcg caaatctggg cgactggggc gcggtgtcgc
     2881 tggatgtcac ccaggctacc agtacgctgg cggataataa ctcctaccag gggcaatcgc
     2941 tgcgtttcct gtatgccaaa tcgcttgcac agtcaggaac caatttacag cttatgggct
     3001 atcgctattc aacctcgggc ttttacacgt tggatgatac cacgtggaaa cggatgagcg
     3061 gctatgacga tgacaatcgg actgacagcg ataaaagcag gccggaatgg gcggattatt
     3121 acaatcttta ttataccagg aggggcaaag tacaactcga tatcaatcaa cagctaggcg
     3181 ggttgggatc gctttttatt accggcagtc agcaaagtta ctggcacact gatgaaaagg
     3241 attctttgtt gcaggtggga tacagcgata cgctggcggg tattgcatgg agcgtttctt
     3301 acaacaataa caaatccgca ggcgatgcgg agcgcgatca aattttcgcc ctgaatatct
     3361 cggtgccgct aagtcaatgg ctgcaacatg atgatgaggt cacgcaccat cacaatgttt
     3421 acgctacctt tagcaccagt acggacaaac agcataacgt tacgcagaat gcgggcctta
     3481 gcggcacact actggacgaa aacaatctta gttacaacat acagtaaggc tatcagaatc
     3541 acggtattgg cgaaagcggc gccgccagcc tggaatacga tggggcgaaa ggcaacgcca
     3601 atattggcta taacgttagc gataacggcg attaccagca ggtgaattat ggcctgagcg
     3661 gcggcctggt ggcgcacgcg catggagtga cgctaagcca gccgttaggc aataccaata
     3721 ttttgattgc cgcgccgggc gcagccaatg tcggcgttgt cgaccagccg ggtattcata
     3781 cggacgcgcg tggctatgcg gtggtgccgt atgcgacgac atatcgccaa aaccgtatgg
     3841 cgctggacgt taacgccatg gctgatgatg tcgatattga tgacgcggtg actcgcgttg
     3901 tgccgaccga aggcgcgctg gttctggccc gctttaaagc gcgagtcggc gtgcgtgccc
     3961 tggtaacgct gaatcataat ggtaagcctg taccctttgg cgcaacggtg acggtgaatg
     4021 atcgccatgc ggaggcgatt gttgacgagg ccggggaggt ctatctttcc gggttgtcag
     4081 cgcaaggcgt tctgcacgtt cgctggggga acctgccgga tcaacagtgc gtcgcgtcct
     4141 atcatctctc ttcctcccgt cagattctga gtcgacaata tgcggagtgt cattaaatga
     4201 aaatacctct tttatttgct ctgctggcgg ggagtgtcgt atcgcagtac gcacacgcag
     4261 acgtgtgtaa aaacgttaac ggcgtgcctt ccagtattaa ttacgattta acgaccactc
     4321 tgacggcaga acaaaaccag gtgggaaaga cggttcaact ggaaaaaagc caggaagtta
     4381 atgtacaggc ggtgtgtccc gccggcgcgt cgacctatag ccagacttat cgctcctatg
     4441 tgtcgccata tccggtcgta gaaacgagcg gtaactggaa atatttaaag ctggacccgg
     4501 actaccttga aggcggaatg cgaattgagg attcttcggc gggcgatatc tatccgccaa
     4561 tgaacaatgt cctgatggga tatgatgaaa atgtgaaagc gggtcaaccg ttttacgttc
     4621 gtgactcaaa tctggagttt cagctcaaaa ttgttaaacc gttcgtcggc acggtgaata
     4681 ttagtcctaa gactatgttc aatgtttatg tcatgaccgc cgcaggcgat ccgctgacag
     4741 atgtcgtgta cagcattctt tatagtggaa cggtgaccgt accgcaaagc tgcgaaatca
     4801 acgccggaca aacgattctg gtgaatttcg gtgcattata cagcggcaat ttcaaccatg
     4861 caggccaaaa gccggagggg gtacgagcga aaaaattcag cgtaccggta aagtgcagcg
     4921 gtctggattc gcaggtcaat ttaacgatgc gtcttatcgc tacgccggat agccactttc
     4981 cccaggctat cgcttcggat aatgccgatg tcggtgtagt ggtcgaaacc gatgaaggaa
     5041 acgcgcttat tcccaatgat gtacagagcg tcgcgccttt tatcaccgat agcgccggac
     5101 gcgctaacat cacattgcaa gcctacccgg tgagtacaac aggtgaaacg ccagcggaag
     5161 gggcgtttac cgccctggcc agcctgcgag tggactttga ctaaatgaac agatcacact
     5221 gcgctctttt tgtcatggga ctaatcctgt gtccacaaat caatgccagc gctgacgacc
     5281 tcgcttataa cctcgaattt accggcacta ttgtggcgca aacttgcgac atagatattt
     5341 ccagtctcag tcaaagtatt gatttagggc agtttgcagt tggcgatttt ccttcgacag
     5401 gaacaacgac aaaatttaag ccctttaata tcaacctcaa aaattgttcc cgaggaatta
     5461 ccggggcgaa gatctggttt accggcgaac ccgatccgga caatcccgcg ctactggcaa
     5521 taaccgatac cggaatggga agcggaaaca tgttagcaag cggggtaggg gtggaaattc
     5581 tgaatgatga tcaggatacc atcagtatca ataatgccga ctcagtggtc tatccgttga
     5641 aagccggacg caacacgctg tctttttata ttcgctataa atcgacccgg ccgacggtca
     5701 cgtccgggaa cgcgacggcg gtcatgtatt tcgatatgca gtatgaatga ggagccatcg
     5761 taattatgcg taacgatatc ctgtacggca tcgggatgct gctggcggca tccggcgtcc
     5821 aggcgcacga tggccgggtc tatgtctccg gaaccatcac ggacaatacg tgttcgctct
     5881 ctccaggctc ggaaaatatt aacgtggcga tgggcgcggt ttctcaacgg cagttttatc
     5941 gcgcgggcga cggttccgcc tggcaacctt ttgctatcga tttacagaac tgcggtagca
     6001 ctgccagcgg cgtaacggtc agttttagcg gtgcagggga tagccgtaat acggatttat
     6061 tggcgcttac cgcaggggaa agcgacgctt caggaattgg gattgcgctt tatgatcaaa
     6121 ataaaacttt aatcccactg gggcaggaga gtgatgtggt gacgctcagt ccgggccagg
     6181 cgtcggcgca tctgcaattt tacgcgcgtt atcttgccga tggcggcacg gtaacgcccg
     6241 gggacgccaa tgcctccgca accttcattc ttgcctatga ataagttctt tttacactgc
     6301 gcgatatatt ggtgcttgct tcccatatca tgggcgcagg ctggcgtggt aattggcggt
     6361 actcgcttta tctatcatgc gggcgccccg gcattaagcg taccggtaag taaccattca
     6421 gaagcgtcct ggttaattga tacgcatatt ttacctggtg gccgctggcc tggaaccaaa
     6481 aacgaaggga atattacgcc cttcgtggtc acgccgccat tatttatgct ttcagcgcgc
     6541 caggaaaact caatgcgggt ggtttatacc ggcggaccgc tacccgccga cagggaaagt
     6601 ctgtttacct tgagtatcgc cgctattccc tccggtaaac cggaagcgaa ccgtgtacaa
     6661 atggcgtttc gttcggcttt aaaattgctc tatcgccctg agggactcgc cggcaatccg
     6721 cagcaggcct accggcatct gatctggtcg cttacccccg atggcgcgac ggtacgcaat
     6781 ccgacaccct attacgttac gctcttttta ttacgcgcta acgagcgcgc ccaggacaac
     6841 gccggggtcg tggctccctt tgcaacgcgt caaacggact ggtgccggca cgcggttcgc
     6901 tgcactgtgc gctggcaaag tattaatgac tatgggcggg taatgacagc gcaaaccgtg
     6961 gatctgacgc gtattcatta acctattttt caggcgtctc ccgatagcgg gaggctttcc
     7021 gatcttatcg aacgagactt ttattatgta ttatcacgcg ttaaaacttt cccgactggc
     7081 gatgttgacg ttggcaggcg ttgcagtatc cgcctcggca atcgccgccg attctgcccc
     7141 gacgtcgcaa attggcccga cggcggaagc ctacatcgtc agtcatccgg ataaagtggg
     7201 agaggtggtg gcaacgtatt tggccgaaca tccggaattt ttggtcgccg ccagcgagac
     7261 gttacatcag cgtcagcaga ttgcgcaaca acaggcgtat gttcaactgg cattacagta
     7321 tcgtgctgag ttgctcagta gcagcagtcc ttccgttggg cccagcgagg caaaagcggc
     7381 ggtggtaatg ttctttgatt accagtgctc gtggtgcagc aaaatggcgc ctgtggtcga
     7441 aaacctgatt aaggcgaacc cggatactcg gtttattttc aaagagtttc ctattttttc
     7501 ctcccgctgg ccggtatccg gactggcggc aagagtcggc gaacaggtat ggcttacaca
     7561 gggcggggcg aaatatctcg actggcataa tgcgctttat gccacaggga aggtggaagg
     7621 cgcgttaacg gaacacgatg tctacaccct ggcgcaacat tatctaacgc cgacgcagct
     7681 ggccgccgta aaagaagcgc aaagcagcgg tgcagtacat gatgcgctcc tcactaacca
     7741 ggcactggcg cagcatatgg actttagcgg cacgcctgct tttgtcgtca tgcctcagac
     7801 gcaaaacggt gatgtaaaac gggtgaccgt gatcccggga agcacgactc aggatatgtt
     7861 gcaaatggcg attcagaaag cgaaggggtg atattcgctc agaggagaac gcacaggagt
     7921 gaaagtaaaa tgaagtctat gcgttgcgtc ataccggtga ttttactttc ctttatcgtt
     7981 catgaaggga cagcgaaacc gaccgctcag attcatttta tgggatcggt tgttgaggca
     8041 ggctgctgga atgacgtggg aaccttagaa attcaatgct ataataaaga gggagttgaa
     8101 cgttatatta ttgtcgagaa tattatcacg ccgatatcgt ctcctcatgc aacggtaaaa
     8161 cgagattatt tggatgaaga taagcaatta acagtgctac gcattgtcta tgactgaacc
     8221 gcgtagcaga ccgcaggtgg tgtcccgtca gtgtcgtgtg aggatattat gaaaaatgtt
     8281 ctcaccttcc cgggacacgg tctacagact ttatcttcag ataaacggcg ctaaaaagaa
     8341 aagtacgatc aataaaaaaa gagtgggaat accaatagat ataattttat tacatcggtg
     8401 agtatgatat tgaatagctt gtggcggtat gtcagcagcg tcaatgataa atctttcatc
     8461 gatttttatc ccctgcctgg ggagcgtaac gaacagttcg aaaagcccga tttgttgt
//
LOCUS       DAJVSD010000193         8482 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.193, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000193 DAJVSD010000000
VERSION     DAJVSD010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8482
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.193"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(30..236)
                     /locus_tag="OQP62_003445"
     CDS             complement(30..236)
                     /locus_tag="OQP62_003445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1107 domain-containing protein"
                     /protein_id="HCS1722897.1"
                     /translation="MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKV
                     RDKQHLSVMSEVNRQVMRLQTEMA"
     gene            563..1120
                     /locus_tag="OQP62_003446"
     CDS             563..1120
                     /locus_tag="OQP62_003446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtfJ family protein"
                     /protein_id="HCS1722898.1"
                     /translation="MTLRKILAMSCLLLPIMACAHNLEDNQRVPPVGIADRGELTLNK
                     DEFSYKNWNSAQLAGKVRVLLHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNT
                     DDAIPGSGMFVRSSIESNKKLYPWSQFIVDSNGVARNAWQLKEEGSAVIVLDKDGRVQ
                     WVKDGALTQQEVQQVVDLLHKLLSK"
     gene            complement(1110..1850)
                     /gene="cysQ"
                     /locus_tag="OQP62_003447"
     CDS             complement(1110..1850)
                     /gene="cysQ"
                     /locus_tag="OQP62_003447"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HCS1722899.1"
                     /translation="MLEQVCQLARNAGDAIMQVYDGAKPMEYARKQDDSPVTAADIAA
                     HTVILEGLRTLTPDIPVLSEEDPPAWEVRQHWQRYWLVDPLDGTKEFIKRNGEFTVNI
                     ALIEQGKPVLGVVYAPVLKVMYYAAEGKAWKEECGVRKQIQVRDARPPLVVISRSHTD
                     DELTEYLQQLGEHQTTSIGSSLKFCLVAEGQAQLYPRFGPTSVWDTAAGHAIAVAAGA
                     HVHDWQGKTLDYTPRESFLNPGFRVTIY"
     gene            2117..4060
                     /locus_tag="OQP62_003448"
     CDS             2117..4060
                     /locus_tag="OQP62_003448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2',3'-cyclic-nucleotide
                     2'-phosphodiesterase/3'-nucleotidase"
                     /protein_id="HCS1722900.1"
                     /translation="MIKFSATLLATLIAASVNAATVDLRIMETTDLHSNMMDFDYYKD
                     TATEKFGLVRTASLIHAARNEVKNSVLVDNGDLIQGSPLGDYMAAKGLKDGDVHPVYK
                     ALNTLDYAVGNLGNHEFNYGLDYLHNALAGAKFPYVNANIIDVKTQKPLFTPYLIKET
                     SVIDKDGHPHTLKIGYIGFVPPQIMIWDKANLSGKVTVNDITETARKYVPEMREKGAD
                     IVVVIAHSGLSADPYHSMAENSVYYLSEVPGVDAIMFGHAHAVFPGKDFADIKGADIA
                     KCTLNGIPAVMPGMWGDHLGVVDLVLNNDSGKWQVTQAKAEARPIYDAAAKKSLAAED
                     SKLVGILKADHDATREFVSKPIGKSADNMYSYLALVQDDPTVQVVNNAQKAYVEHFIQ
                     GDPDLAKLPVLSAAAPFKVGGRKNDPASFVEVEKGQLTFRNAADLYLYPNTLVVVKAS
                     GKEVKEWLECSAGQFNQIDIHSNKPQSLINWDGFRTYNFDVIDGVNYQIDVSQPARYD
                     GECQMVNPQAERIKNLTFNGKPVDPNATFLVATNNYRAYGGKFAGTGDSHIAFASPDE
                     NRAVLAAWIGAESKRAGEIHPAADNNWRLAPIHSDTALDIRFETSPGDKAAAFIKEKG
                     QYPMKKVGVDDIGFAIYQVDLSK"
     gene            complement(4118..4504)
                     /locus_tag="OQP62_003449"
     CDS             complement(4118..4504)
                     /locus_tag="OQP62_003449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HCS1722901.1"
                     /translation="MRAHTLSRQLREGNLFAEQCPSREVLKHVTSRWGVLILVALRDG
                     THRFSDLRRKMGGVSEKMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDK
                     VAALADWIELNLPQVLAQRERLSDGG"
     gene            4592..5440
                     /locus_tag="OQP62_003450"
     CDS             4592..5440
                     /locus_tag="OQP62_003450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1722902.1"
                     /translation="MIAITGATGQLGQHVIENLLKTTPASHLVAIVRNPKKAAPLSQR
                     GIAVRQADYANEAALTTALQGVDKLLLISSSEVGQRTAQHRNVIQAVIAAKVKFIAYT
                     SLLHADKSPLALADEHIETEKMLAESGIPHTLLRNGWYTENYLASVPAALKHGVFIGA
                     AGEGKIASAMRADYAAAAARVIREEGHAGNVYELAGDNAWTLSQLADELTHQSGKKIV
                     YQNLSEVDFAAALKGAGLPDGLADMLANSDAGAAKGGLFDDSHTLRKLIGRPTTALTE
                     SLRSVL"
     gene            5521..6486
                     /locus_tag="OQP62_003451"
     CDS             5521..6486
                     /locus_tag="OQP62_003451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1722903.1"
                     /translation="MISGVLYALLAGLMWGLIFVGPLIVPDYPALLQSMGRYLALGLI
                     ALPIAWLGRTRLRQLTRKDWSTALSLTLMGNVIYYACLASAIQRTGAPVSTMIIGTLP
                     VVIPLFANVLYSQRDGRLSWLRLAPALALIGFGLLCVNIAELSQGLSDVSGWRYGSGI
                     VLALISVACWAWYALRNARWLRENPDKHPMMWATAQALVTLPVSLIGYAATCLWLSIQ
                     NPMFTLPFGPHPALFIGLMIAIAVLCSWVGALCWNIASQKLPTVILGPLIVFETLAGL
                     LYTFILRQEIPPFLTLSGIALLVAGVVIAVRAKPEKATVVPVTER"
     gene            6589..7251
                     /gene="ytfE"
                     /locus_tag="OQP62_003452"
     CDS             6589..7251
                     /gene="ytfE"
                     /locus_tag="OQP62_003452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster repair protein YtfE"
                     /protein_id="HCS1722904.1"
                     /translation="MAYRDQPLGELALSIPRASALFRQYDMDYCCGGKQTLARAAARH
                     DVDIDIIEAQLAQLAEQPIEKDWRAVPLADIIDHIVVRYHDRHREQLPELILQATKVE
                     RVHADKPNVPRGLTKYLTALHEELSSHMMKEEQILFPMIKQGMGRQATGPISVMESEH
                     DEAGELVDVIKHVTQNVTPPPEACTTWKAMYNGINEMIDALMEHISLENNVLFPRALA
                     GE"
     gene            complement(7318..>8482)
                     /locus_tag="OQP62_003453"
     CDS             complement(7318..>8482)
                     /locus_tag="OQP62_003453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000944334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722905.1"
                     /translation="NEYNDRGKMSNDFVHVAAFSSLIKNDFWQFYWLTDGQHILWAGK
                     IVQNPPGKPPVDAATFRAYGRFAADKDSLYFDGERTDDNHGEKRVDMDSLQQVGGNIK
                     LRDSGDVLKDRRNLYFQGRWLASAQGYSILGVKSWEQRNILFSPTSCDTTSNPGPWDT
                     ILRTATQVFVNGVAIDADPNSFHVVRWVAGVQLLYRDKAGVKRYYFGKDCLNTFNVQR
                     DKVTWMTREASRRGDDCRIATIPNVDPEYFHPIHYNWTVAQYKDLLYQVKYVSPVDRV
                     LTITRLPDPQVQLKAGANLVGKQIYFIGDGGVQIIDLIGPLVWFKSPDGSFSDVFAHD
                     DRYLYFFGDTLVDSGQRRNVTRTLDTAHIDKSGYYLVTEEGKYEVINNAFTSR"
BASE COUNT         2076 a         2255 c         2170 g         1981 t
ORIGIN      
        1 ttttttaacc tactgcatag cacttttggt tacgccatct cagtttgcag acgcataacc
       61 tgacggttaa cttcagacat cacagacaag tgctgcttgt ctctcacttt tgggataaga
      121 atcttaccct tatcgaactc aaaagcgcca acatccttga tatataaccg tccacggaac
      181 aggatcttca cgtacttcgc cacctgtagc gggttgtagc gttggaaaat tttcattgtt
      241 gtctcctgca gagtattacg cccttgcggt gccacaatcg gcccaacagt tttaaggcgc
      301 aaattttaat gccatatgac tatagaccat atctacgtcg tttccagtgt gcataagtat
      361 atttaccttt tgattacagt tattcagaat tatctaaaca tcagctcatt tttctcagta
      421 tatgccttca tttttcacag gaagtgtgca cccgcccgca aactggcatc ccctttgcgg
      481 gaaaaagcat caatcgcaca tatgattaac tgtcggccca aagtggtcgg atcacctgca
      541 aaaaaataaa gaaggaatga ccatgaccct acgtaaaatt ctggcgatgt cgtgtctgct
      601 actccccata atggcttgtg cgcataacct tgaagataac caacgggtgc cgccggtagg
      661 cattgccgat cgtggcgaac tgacgttgaa taaagatgag tttagttata aaaactggaa
      721 tagcgcgcag ctggcgggaa aagtgcgcgt cctgctgcac attgcgggtc gaacgtcagc
      781 gaaggaaaaa aacgccacgc tgattgaagc gattaaatca gccaagctcc cgcatgacag
      841 ataccagacg accacaattg tgaacaccga tgatgcaatc ccaggctccg gtatgttcgt
      901 gcgtagcagt atagaaagta ataaaaagct ctacccgtgg tcgcaattta ttgtcgacag
      961 caatggcgtg gcgcgtaacg cctggcaatt aaaagaagag gggtccgccg tcatcgtgct
     1021 tgacaaagac ggtcgggttc aatgggtgaa agatggcgcg ttaacccagc aagaggtaca
     1081 gcaggtggtc gacctgctgc ataagctcct cagtaaatag tcacccggaa gccggggtta
     1141 aggaacgatt cacgaggggt atagtccagc gtttttccct gccagtcgtg aacgtgcgcc
     1201 ccggctgcaa cggcaatggc atgacctgcg gcagtatccc agacgctggt cggcccaaat
     1261 ctggggtaaa gctgcgcctg tccttccgcc acaagacaga atttcagcga ggaaccaata
     1321 gaggtagtct gatgttcgcc aagctgttgg agatattcgg tgagttcatc atccgtatgc
     1381 gaacggctaa tcaccaccag cggcgggcgg gcatcccgca cctgaatctg cttacgcacc
     1441 ccgcactcct ctttccaggc cttaccttcc gccgcgtagt acatcacttt cagcaccggc
     1501 gcatagacaa cgcccaacac cggcttgccc tgctcaatca gcgcgatatt gaccgtgaat
     1561 tctccattgc gcttgatgaa ttctttggtg ccgtcgagcg gatcgaccag ccagtaacgc
     1621 tgccagtgct ggcgcacttc ccaggcgggc ggatcttctt ctgaaagcac cggaatatcc
     1681 ggcgtgagcg tgcgtaaccc ttcgagaatc acggtatgtg cggcgatatc cgccgcagtg
     1741 actggagaat cgtcctgctt gcgggcgtac tccatcggtt tggctccatc ataaacctgc
     1801 ataatggcat cgcccgcgtt ccgtgcaagc tggcatactt gttctaacat tctccacctc
     1861 tttatgacgg gggcgttaac tcgttgtttt acttataccc gatcgttaag ggttccgcca
     1921 actgtgatac cgtcagcggt tttgataata gctttcatgg catgattcac ctttctgtga
     1981 acactcgcaa aaaatcggcc ggatggggcg gtttcgcctt cttctggcga cggtcggaac
     2041 gataccggtt tcactgttta tcatcgctat ttttcactat ccggcttttc tattgcgttc
     2101 ttaaaaggtg cctctgatga ttaagtttag tgcaacgctt ctggctacgc tgatcgccgc
     2161 cagcgtgaat gcggccaccg tcgatctccg tatcatggaa actactgatt tacatagcaa
     2221 catgatggat ttcgattatt acaaggatac cgcaaccgaa aaattcggat tggtacgtac
     2281 cgcaagtttg attcatgccg cccgaaatga agtcaaaaac agcgtgctgg tggataacgg
     2341 cgacctgatt caggggagcc ctctgggcga ttatatggcg gcaaaagggc tcaaagacgg
     2401 tgatgttcac ccggtctata aagcgctcaa tactctggat tacgcggttg gaaacctcgg
     2461 caaccatgag tttaattatg gtctggacta tctgcataac gcgctggccg gcgcgaaatt
     2521 cccttatgtt aacgccaata ttatcgacgt taaaacccaa aagccgctct ttacgcctta
     2581 tctgattaaa gagacgagcg ttattgataa agacggccac ccgcacactc tgaaaatcgg
     2641 ctatatcggc tttgttccgc cgcaaatcat gatttgggat aaagcgaatc tgagcggcaa
     2701 agttaccgtc aatgacatta cggaaaccgc ccggaaatat gtgcccgaaa tgcgcgagaa
     2761 aggcgctgat atcgtggtag tcattgctca ctcaggcctt tctgccgatc cgtaccacag
     2821 catggcggaa aactcggttt attacctcag cgaagttccc ggcgtcgacg cgattatgtt
     2881 tggtcacgcc cacgccgtct tccccggtaa agattttgcc gacatcaaag gcgcggatat
     2941 cgccaaatgt acgcttaacg gcattcctgc ggtaatgcca ggcatgtggg gcgaccatct
     3001 gggagtggtc gatctggtgc tcaataacga cagcggcaaa tggcaggtta cgcaggcgaa
     3061 agcggaagcg cggcctattt acgacgccgc cgctaaaaag tcgctggcgg cggaagacag
     3121 taagctggtc ggtattctga aagccgatca cgatgccacc cgcgagtttg tcagcaagcc
     3181 catcggtaaa tccgccgata atatgtacag ttatcttgct ctggtgcagg acgatcctac
     3241 cgtacaggtg gtgaataacg cgcaaaaagc gtatgtggaa cactttattc agggcgatcc
     3301 ggatctggcg aaactgccgg tgctgtccgc cgccgcgccg tttaaagttg gcgggcgtaa
     3361 gaacgatcct gccagctttg tcgaggtgga aaaaggccag ctgaccttcc gtaacgccgc
     3421 ggatctttat ctctatccga atacgctggt ggtggtgaaa gccagcggca aggaggtaaa
     3481 agagtggctg gaatgttctg ccggacagtt taatcagatt gatattcaca gcaacaaacc
     3541 gcaatcgttg atcaattggg atggctttcg cacctataat ttcgatgtca ttgacggtgt
     3601 gaattatcaa atcgatgtgt cacagcccgc ccgctatgat ggcgaatgcc agatggtgaa
     3661 tccgcaggcg gaacgtatta aaaacctgac ctttaacggt aagcctgtcg acccgaacgc
     3721 tacgttcctg gtcgccacga ataactatcg cgcttacggc ggcaagtttg ccggcacggg
     3781 cgacagccat atcgcctttg cgtctccgga tgaaaatcgc gccgtgctgg cggcatggat
     3841 tggcgcagag tcaaaacgcg cgggcgaaat ccatccggcg gcggataata actggcgtct
     3901 ggcgccaatc cacagcgata cggcgctgga tatccgcttt gaaacatcgc caggcgataa
     3961 agccgcggcc ttcattaaag agaaagggca gtatccgatg aaaaaggttg gtgtcgatga
     4021 tatcggtttt gccatttatc aggtggattt gagcaagtaa cgtgagtccc gtatggcgct
     4081 gcgtttattc ggcctgactg gcaggccgaa taaagcgcta gccgccatct gataaacgct
     4141 cccgctgcgc caatacctgg ggcaaattca gttctatcca gtccgccagc gcggcgactt
     4201 tatcactcac ctgctcgcca agcggcgtca ggctgtactc cacatgcggc ggaacaactg
     4261 gatatgacac ccggttaaga aatccgtcct gttcaagcgc ctgtaacgac tgcgccagca
     4321 tcttttcact cacgcctccc atcttgcggc gcaggtcgct aaaacggtgt gtaccgtcgc
     4381 gtaacgcgac cagaatcagt acgccccagc gactggtgac atgttttaac acctcacggg
     4441 acgggcactg ttcagcaaag agattacctt cacgcaactg ccgggaaaga gtatgagcgc
     4501 gcattgatac ttaccttttt gtacgtactt actaaaagta agtttaggtg gtagcgtaat
     4561 aaaacacaag accaacactg aggagttcac catgattgct atcactggcg caacaggcca
     4621 actgggccaa cacgttattg aaaacctgct aaaaacgacg cccgccagtc accttgtcgc
     4681 gatcgtccgt aacccgaaaa aagccgcccc gctcagtcag cgcgggattg ccgttcgcca
     4741 ggcggattac gctaacgaag ctgcgctgac caccgcctta cagggcgttg ataaactgct
     4801 gctcatttca tccagcgaag tgggacaacg caccgcgcag caccgcaacg tcattcaggc
     4861 cgtcattgcc gcgaaggtga aattcatcgc ctataccagc ctgctacatg cggataaatc
     4921 gccgctggcg ctcgccgatg aacatattga aacggaaaag atgctggctg agtcaggtat
     4981 tcctcacacg ctattacgta acggctggta tacggaaaac tacctggcga gcgtccctgc
     5041 cgcgctgaag catggcgtct ttattggcgc ggcgggagaa gggaaaatcg cctccgcaat
     5101 gcgcgctgac tatgccgccg ccgccgcgcg cgtcatccgt gaagagggtc acgccgggaa
     5161 tgtttacgag ctggcgggtg ataacgcctg gacattaagc cagttggcgg atgaacttac
     5221 tcatcagagc ggaaaaaaaa tcgtctacca gaacctgagc gaagtcgatt ttgccgccgc
     5281 gctgaaaggc gcaggcctgc ctgacggact ggcggatatg ttggccaatt ctgacgctgg
     5341 cgcggcgaaa ggcggtctgt ttgatgacag ccatacgctg cgtaaactca tcggtcgccc
     5401 gacgacggcg ctcacagaaa gccttcgctc cgtactgtaa gtgttaaaat ttagttaatt
     5461 tatatggcat cctcatagac cttctctgat aatgacggaa cggtttatga ggagaatctg
     5521 atgattagcg gcgtgctata cgccctgctg gcagggctaa tgtggggatt gattttcgtc
     5581 ggcccgttaa tcgtgccgga ttacccggcc ctcttacagt caatgggacg ctatctggcg
     5641 ctggggctga ttgccctgcc gattgcctgg ttaggccgca cgcggttacg ccagttgacg
     5701 cgcaaagact ggtccaccgc cctgtcgctg accctgatgg gcaatgtaat ctattacgcc
     5761 tgcctcgcca gcgccattca gcgaaccggc gcgccggttt cgacgatgat catcgggaca
     5821 ttgccggtcg tcattccgct tttcgctaac gttctctata gccaacgaga cggcagatta
     5881 tcctggctac gtttagcgcc cgcgctggcg cttatcggtt ttggcctgct gtgcgtcaat
     5941 attgctgaac ttagccaggg attgtccgat gttagcggct ggcgctatgg ttcaggcatt
     6001 gtgctggcgc tgatttccgt agcgtgctgg gcatggtatg cgctgcgcaa cgcccgctgg
     6061 ctgcgggaaa atcccgacaa acatcccatg atgtgggcaa cggcgcaggc gctggttacg
     6121 ctgccggtct cgttaatcgg ctatgcggca acctgtctgt ggctgagtat ccagaacccg
     6181 atgtttaccc tgccctttgg cccgcatccc gcgctgttta tcggtctgat gatcgccatc
     6241 gcggtgctgt gttcctgggt gggcgcgttg tgctggaata tcgccagcca aaaattgcca
     6301 accgtgattt tagggccgct gattgttttt gaaacgttgg caggactgct ctataccttc
     6361 attctgcgcc aggaaatccc gccattcctg acgttaagcg gcattgcgct cctggtggcg
     6421 ggcgtggtta ttgccgtgag agcgaaaccg gaaaaagcga ccgtcgttcc ggtcacggaa
     6481 cgctaatctc atcctggctt aaattatacg caccccgaaa gagttatagc ctcgccttaa
     6541 agatgcattt aaaatacaac ttatattatt gcaaatgagg taacggctat ggcttatcgc
     6601 gatcaacctt taggcgaact ggcgctctct attccccgcg catcggcgct gtttcgccag
     6661 tacgatatgg attactgctg cggcggaaaa cagacgctgg cgcgcgccgc cgctcgtcac
     6721 gacgtcgata ttgacattat tgaagcgcaa ctcgcgcagt tggctgaaca gcccatcgaa
     6781 aaagactggc gcgccgttcc gctggcggac attattgacc atatcgttgt gcgctatcat
     6841 gaccgacacc gcgaacaact gccggagctt atcctgcagg caaccaaagt ggaacgcgtt
     6901 cacgcggata agccaaacgt cccacgcggc ctgacaaaat atctcaccgc gctgcatgaa
     6961 gagctttcca gccatatgat gaaagaagaa cagatcctgt tccccatgat caaacagggt
     7021 atgggtcgcc aggcaacggg cccgataagc gtaatggaaa gcgagcatga cgaggcggga
     7081 gagctggtag acgtcatcaa acacgtcacc caaaatgtaa cgccgccgcc agaagcctgc
     7141 accacctgga aagcgatgta taacggcatt aatgagatga ttgatgctct gatggagcac
     7201 atcagcctgg agaataacgt gctgttccca cgcgcgctgg ccggggaata atccatcgcc
     7261 aataaacgat cctgaacgca tagacaggat cgtttattct gaatcgacta acgcttttta
     7321 gcgagaggtg aatgcattat taataacctc atatttcccc tcctcagtga ccagataata
     7381 accgctcttg tcgatatgcg cagtatccag cgtccgcgtt acgttacgcc gttgcccgct
     7441 atctaccagc gtatcaccga agaaatagag ataacgatcg tcatgagcaa aaacatcaga
     7501 aaatgaacca tcgggacttt taaaccacac caatggtcca ataaggtcga taatctgcac
     7561 tcccccatcg ccgataaaat agatctgttt acccaccaaa ttagcgccag ctttcagctg
     7621 tacctgcgga tcaggcaagc gggtgatggt taataccctg tcgaccggag agacatactt
     7681 cacctggtac aatagatctt tgtactgtgc taccgtccaa ttgtaatgaa tgggatggaa
     7741 atattctgga tcaacattgg gaatagtcgc tattcggcag tcatcgcctc ggcgcgatgc
     7801 ctctcgcgtc atccatgtca ccttatcccg ctgtacatta aacgtattga gacagtcttt
     7861 gccgaagtaa tagcgtttta cgcctgcttt gtcgcgatag agtaactgca cgccagcgac
     7921 ccagcgcaca acatgaaaag agttcggatc ggcatcaatt gccacaccat taacaaaaac
     7981 ctgcgtggcg gtacgcagaa tagtgtccca cgggccagga ttagatgtag tatcgcagct
     8041 ggtcggcgaa aacagaatat tacgctgctc ccaggattta acgcccagga tggaatatcc
     8101 ctgcgcacta gccagccagc gtccctgaaa gtagaggttg cgcctgtctt taagcacatc
     8161 gccggagtcg cgtaatttga tgttgccgcc gacctgctgc aacgaatcca tatcgaccct
     8221 tttttcacca tgattatcat ctgtgcgctc gccgtcgaag taaagactat ctttatcagc
     8281 ggcaaagcgt ccatacgccc gaaaagtcgc tgcatccact ggcggcttac ccggtggatt
     8341 ttgtacgatt ttcccagccc ataaaatatg ctggccgtcg gttagccaat aaaactgcca
     8401 gaaatcattt tttattagcg atgaaaaagc ggcgacatga acaaaatcat tactcatttt
     8461 tccacggtca ttatattcat ta
//
LOCUS       DAJVSD010000194         8366 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.194, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000194 DAJVSD010000000
VERSION     DAJVSD010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8366
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.194"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(1..197)
                     /locus_tag="OQP62_003454"
                     /pseudo
     CDS             complement(1..197)
                     /locus_tag="OQP62_003454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_446529.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(353..1174)
                     /gene="dapB"
                     /locus_tag="OQP62_003455"
     CDS             complement(353..1174)
                     /gene="dapB"
                     /locus_tag="OQP62_003455"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HCS1722906.1"
                     /translation="MHEAQIRVAIAGAGGRMGRQLIQAAMAMEGVQLGAALEREGSSL
                     LGSDAGELAGAGKSGVIVQSSLEAVKDDFDVFIDFTRPEGTLTHLAFCRQHGKGMVIG
                     TTGFDDAGKQAIREASQEIAIVFAANFSVGVNVMLKLLEKAAKVMGDYSDIEIIEAHH
                     RHKVDAPSGTALAMGEAIAGALDKDLKDCAVYSREGYTGERVPGTIGFATVRAGDIVG
                     EHTAMFADIGERVEITHKASSRMTFANGALRSALWLKTKKNGLFDMRDVLGLDVL"
     gene            complement(1354..2262)
                     /gene="citG"
                     /locus_tag="OQP62_003456"
     CDS             complement(1354..2262)
                     /gene="citG"
                     /locus_tag="OQP62_003456"
                     /EC_number="2.4.2.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triphosphoribosyl-dephospho-CoA synthase CitG"
                     /protein_id="HCS1722907.1"
                     /translation="MNVSVVTERRTPAYSSLAAGELNGLVARALLTEARLTPKPGLVD
                     IRNSGAHRDMDLAAFERSTTAIAPWMEKFFIMGNNTAALAAENVLVMLRPLGMACEND
                     MLQATNGVNTHRGAIFAFGLLSAAIGRLLARGEPLEQNRICDQVARLSRNIVAHELSA
                     RKAGKLTKSETHFQCYGLSGARGEAESGFRTVRTQALPVFNRVVQEHDDTHLALLQTL
                     LHLMAWNDDTNLVSRGGLEGLYYVQQQAQKLLWQGGVLVEGGIEAMQFLDDELILRNL
                     SPGGSADLLAVTWFLSHFPAGSLYPE"
     gene            complement(2240..2791)
                     /gene="citX"
                     /locus_tag="OQP62_003457"
     CDS             complement(2240..2791)
                     /gene="citX"
                     /locus_tag="OQP62_003457"
                     /EC_number="2.7.7.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase holo-[acyl-carrier protein]
                     synthase"
                     /protein_id="HCS1722908.1"
                     /translation="MKGTDLLYQGQAVTLEEMLQARDKRAARQRQALNCYRLPLISLT
                     LVAPGAVKNSAVWRRVADYAIAEILALCEQKEWVNVWEMQVNERSGPEWMAAVCAPAM
                     ALKQHMSTLEMSHPLGRLWDIDIIDSDGKSLSRRELGHPARPCLICQQDAHLCARGKH
                     HTLDLLLDEIARRIECYERERCD"
     gene            complement(2791..4311)
                     /gene="citF"
                     /locus_tag="OQP62_003458"
     CDS             complement(2791..4311)
                     /gene="citF"
                     /locus_tag="OQP62_003458"
                     /EC_number="2.8.3.10"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase subunit alpha"
                     /protein_id="HCS1722909.1"
                     /translation="MKETVTMLNQQYVVPEGLQPYQGVTVNSPWLASETEKRRRKICD
                     SLEEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWP
                     LIEHIKNGVVRQIYTSGLRGKLGEEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAF
                     LGVPCCDEFGNANGFSGKSRCGSLGYAQVDAQYAKCVVLLTEEWVEFPNYPASIAQDQ
                     VDLIVQVDEVGDPEKITAGAIRLSSNPRELLIARQAANVIEHSGYFCDGFSLQTGTGG
                     ASLAVTRFLEDKMRRHNITASFGLGGITGTMVDLHEKGLIKALLDTQSFDGDAARSLA
                     QNPHHIEISTNQYANPGSKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLCGASGG
                     HSDTAAGADLTIITAPLVRGRIPCVVEKVLTTVTLGASVDVLVTDHGIAVNPARQDLL
                     DNLRAAGVALMTIEQLQQRAEQLTGKPQPIEFTDRVVAVVRYRDGSVIDVIRQVKG"
     gene            complement(4322..5191)
                     /gene="citE"
                     /locus_tag="OQP62_003459"
     CDS             complement(4322..5191)
                     /gene="citE"
                     /locus_tag="OQP62_003459"
                     /EC_number="4.1.3.34"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (pro-3S)-lyase subunit beta"
                     /protein_id="HCS1722910.1"
                     /translation="MRPRRSMLFIPGANAAMLSTSFVYGADAVMFDLEDAVALREKDT
                     ARLLVHHALQHPFYQDVEKVVRINPLNTPFGLADLEAVVRGGADIVRLPKTDSKNDVL
                     ELEAQVERIERECGREVGSTRLMAAIESAKGVVNAVDIATSSPRMVAIALAAFDYVMD
                     MGTSRGDGTELFYARCAVLHAARVAGIAAYDVVWSDINNEEGFLKEVQLAKGLGFNGK
                     SLVNPRQIELLHQAYSPTRKEVEHAHEVIAAAEEAESRGLGVVSLNGKMIDGPIIDHA
                     RKVVALSASGIRD"
     gene            complement(5188..5481)
                     /gene="citD"
                     /locus_tag="OQP62_003460"
     CDS             complement(5188..5481)
                     /gene="citD"
                     /locus_tag="OQP62_003460"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase acyl carrier protein"
                     /protein_id="HCS1722911.1"
                     /translation="MKIIKDALAGTLESSDVMIRIGPSSEPGIRLELESLVKQQFGAA
                     IEQVVRETLAKLGVERALVSVDDKGALECILRARVQAAALRAAEQTEIQWSAL"
     gene            complement(5511..6554)
                     /gene="citC"
                     /locus_tag="OQP62_003461"
     CDS             complement(5511..6554)
                     /gene="citC"
                     /locus_tag="OQP62_003461"
                     /EC_number="6.2.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[citrate (pro-3S)-lyase] ligase"
                     /protein_id="HCS1722912.1"
                     /translation="MQNRVNLIFKRIYLQKDVLRRESVAMFLEGVGLALEDDCEIAVC
                     AYWQGEIVGCGSLAGNVLKCIAVSPVLQGEGLSLKLLTELLTLAYELNRSELFLFTKP
                     QNRLLFSGAGFWPIAQAGELAVLMENSSERLARFCRQLALYRQPGKTIGAIVMNANPF
                     TLGHRYLVEQAAAACDWLHLFVVKEDASFFSYTDRWALIEQGIAGIDNVTLHSGSAYM
                     ISRATFPGYFLKEKGVVDDCHCQIDLQLFREHLAPALGITHRFVGSEPFCPLTCAYNQ
                     RMHDILHDPKRSGPVIEVVELARVEKNGTAISASRVRKLYSERNWPAISALVPAGTLA
                     YLQRHAARHTETI"
     gene            6800..8140
                     /gene="citS"
                     /locus_tag="OQP62_003462"
     CDS             6800..8140
                     /gene="citS"
                     /locus_tag="OQP62_003462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/sodium symporter CitS"
                     /protein_id="HCS1722913.1"
                     /translation="MTNMTQASATEKKGASDLLRFKIFGMPLPLYAFALITLLLSHFY
                     NAIPTDLVGGFALMFVMGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQK
                     EIDAISNVMDKSNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGASLFGI
                     VIGLCFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAIAILTI
                     ANIFAIIFAALLDMIGKKYTWLSGEGELVRKASFKTEDDEKAGQITHRETAVGMVLST
                     TCFLLAYVVAKKILPSIGGVSIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFFSK
                     QLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESS
                     ITAGLCMANRGGSGDLEVLSACNRMNLISYAQISSRLGGGIVLVIASIVFSMMV"
     gene            8299..>8366
                     /locus_tag="OQP62_003463"
     CDS             8299..>8366
                     /locus_tag="OQP62_003463"
                     /EC_number="4.1.1.112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459061.1"
                     /note="catalyzes the decarboxylation of oxaloacetate to
                     form pyruvate and carbon dioxide; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxaloacetate decarboxylase subunit gamma"
                     /protein_id="HCS1722914.1"
                     /translation="MNEAVLLGEGFTLMFLGMGFVL"
BASE COUNT         1968 a         2395 c         2002 g         2001 t
ORIGIN      
        1 atctaacttc tttttcttta agacaggcgc atacgattgg accacaaaca gcctcactac
       61 agcataaaaa agctaactta ttgaagcaaa agagataaaa cgatcccgtg gaacagcact
      121 aaccccccaa tggatatcag tcttatcagt ctggtcgagg tgccttttgc atacggtaag
      181 ccactgcggc agaacatgtc gtgggagaag aaactgtcga aacatgaatg gtgaaaggcg
      241 ttatttatct gaccgaataa ccgaggggca aaaacaaaag ggcaataata tattgccctt
      301 tgtaatcaat taatcttgat taccacaacc acatcacgaa ggtatttagt cgctataata
      361 catccagccc cagcacatcc cgcatgtcaa atagcccatt tttcttcgtt tttagccata
      421 acgccgatcg caacgcgcca tttgcaaacg tcatgcggct ggaagcttta tgcgtaatct
      481 ctacgcgctc gccaatatcg gcaaacatcg cggtatgttc gccgacgatg tcgcccgccc
      541 gaacggttgc aaagccaatc gttcccggta cgcgctcgcc ggtataacct tcacgcgagt
      601 agaccgcgca gtccttcaga tctttatcca gcgccccggc gattgcctcg cccattgcca
      661 gcgctgtccc cgacggtgca tccactttat ggcggtggtg cgcttcaata atttcaatat
      721 cgctatagtc gcccattacc ttcgcggctt tctccagcag cttgagcatg acgttaacgc
      781 cgacgctaaa gtttgcggcg aaaacgatcg caatctcttg cgacgcctca cgaatggcct
      841 gtttaccggc gtcgtcaaag ccggtagtac caatcaccat ccctttacca tgctggcggc
      901 aaaacgccag atgcgtcaac gtgccttccg gacgggtaaa atcgatgaaa acgtcaaaat
      961 catcttttac cgcctcaagg ctgctttgaa cgatcacgcc ggactttccc gcccccgcca
     1021 gttcgccagc atcgctgccc agcaaggaag agccttcgcg ctccagcgcg gcacccagct
     1081 gaacaccttc catcgccatg gcggcctgga ttaactgccg tcccatgcgg ccaccggcgc
     1141 cggcaatggc gacgcggatt tgtgcttcat gcatagctat tctcttttgt aaaaattgcg
     1201 taaaccgttt tcagagtaac cagcgcgccc ggaggccgcc atctaaaatc gccgataatt
     1261 agaaattaat gataaacagg gagcgatatc agtaaaagac atgattcatc ccacaggatg
     1321 aatcattgct ggagagaatg aaagaagaga aacttactca ggatagaggg aaccggcagg
     1381 aaaatgactt aaaaaccagg tcactgccag taaatccgcg ctaccgccag ggcttaagtt
     1441 acgcaggatg agttcatcat cgaggaactg catcgcttca atgcccccct caaccaatac
     1501 gcccccttgc cacaacaatt tttgtgcctg ctgctgcacg tagtaaagcc cttccaggcc
     1561 tccccgtgac accagattgg tatcatcatt ccacgccatc agatgcaaca atgtttgcag
     1621 cagggcaaga tgggtatcgt catgctcctg cacgacccgg ttaaacaccg gcaaagcctg
     1681 cgttctgacg gttcgaaaac cgctttccgc ttctccccgc gcgcccgaca ggccataaca
     1741 ctggaaatgg gtttcactct ttgtcagttt tcccgctttt cttgctgaga gctcgtgggc
     1801 aacaatattc cgactcaggc gagcaacctg gtcgcagata cgattttgct ccaacggttc
     1861 tccccgcgcg agaagtcggc caatcgctgc gctcagcagg ccaaaagcga aaatcgcccc
     1921 gcgatgggta ttcacaccat tggtcgcctg tagcatatcg ttctcacagg ccatccccag
     1981 cggacgcagc atcaccagga cattttctgc cgccagcgcc gccgtgttgt tgcccatgat
     2041 aaaaaacttt tccatccacg gagcaatggc ggtagtgcta cgttcaaatg ccgccagatc
     2101 catatcccta tgcgctcccg aattacgaat atcgaccaga ccgggttttg gtgtcagcct
     2161 ggcttccgtc agcagcgctc ttgcaaccaa cccattaagt tcgccagccg ccagcgatga
     2221 gtacgctggc gtacgccgtt cagtcacaac gctcacgttc atagcattca atccttcgtg
     2281 caatttcatc caacaaaagg tcaagggtgt gatgcttgcc ccgggcacag agatgagcat
     2341 cctgctggca tatcaaacat ggccgggcag gatgcccgag ttcacggcgt gatagcgact
     2401 taccgtcgct atcaataatg tcgatgtccc aaagccgccc taacggatgg ctcatctcta
     2461 gtgtcgacat gtgctgtttc aacgccattg ccggcgcaca gaccgctgcc atccattccg
     2521 ggccgctgcg ttcatttacc tgcatttccc agacgttgac ccactccttc tgttcgcaaa
     2581 gcgccagtat ttcggcaatt gcgtaatcgg cgacacgccg ccagaccgct gagtttttaa
     2641 cggcgcccgg tgcaaccagc gtgagggaaa tcaacggtag ccgatagcag ttcaacgcct
     2701 gacgctgcct ggcggcacgt ttatcgcgcg cttgtagcat ctcctccagc gtaactgcct
     2761 ggccctggta cagcaggtct gtgcccttca tcagccttta acctggcgaa tcacgtcaat
     2821 cactgaaccg tcgcgataac gcaccacagc caccacccga tcggtaaact caatcggctg
     2881 cggtttaccg gtcagttgct cggcgcgctg ttgcagttgt tcgatggtca tcagcgccac
     2941 gcccgcagca cgcaggttat caagcagatc ctgacgcgca gggttcaccg caataccatg
     3001 gtcggtaacc agcacatcaa cgcttgcccc tagcgtgacg gtagtcagca ctttttctac
     3061 cacgcaagga atacgcccgc gcaccagcgg tgcggtaata atggtgagat cggcccctgc
     3121 tgccgtatcg ctatggccgc ccgatgcgcc acacagtacg ccgtttgaac cggtcatcac
     3181 gttaacgttg aaattcacgt caatttccag cgcgctcagc atcaccacat tcaggcgttc
     3241 gcatgccgcg cctttagagc cggggttcgc gtattgattg gttgaaattt caatatgatg
     3301 cgggttctgc gccagcgaac gggctgcatc gccatcgaat gattgcgtat ccagcagcgc
     3361 tttgatcaac cctttctcat gcagatccac catggtgccg gtgatcccgc ccaggccaaa
     3421 actcgccgta atgttgtggc gacgcatttt gtcttccagg aaacgggtga ccgccagaga
     3481 agcgccaccg gtgccggttt gcagcgagaa accgtcacaa aaataacccg agtgttcgat
     3541 cacattggcc gcctgccggg cgatcaacag ttcacgcggg ttgctggaca gacgaatcgc
     3601 gcccgcagtg attttttccg gatcccctac ttcgtccacc tgtacgatca aatcaacctg
     3661 atcctgcgcg atactggccg gataattggg gaactcgacc cactcttcag tcaggagcac
     3721 cacacattta gcgtactgcg catcaacctg cgcatacccc aaagagccgc agcgtgactt
     3781 gccgctaaaa ccgttcgcat taccaaattc gtcgcagcac ggcacgccga ggaaagcgac
     3841 atcaatattc agctcaccgc tctgaatcag ttttacgcgg ccgccgtgag agtggatctg
     3901 taccgggttt tccatcaggc cagcggagat ctcttcccct aacttgccgc gcagcccaga
     3961 ggtgtaaatc tgccgcacca cgccattttt aatgtgttcg ataagcggcc agtgggcatc
     4021 gattaacgag ctggaggcaa gcgtcagatc gcggaatccc atttccgcca gtttcgccat
     4081 caccatattg acaactttgt cgccaccacg aaacgcatgg tggaaggata tcgtcatgcc
     4141 atttttaagc ccggaacgac ggatagcctc ttcaagcgag tcacaaattt tacgccgacg
     4201 cttttccgtt tcactggcaa gccacgggct attcactgtt accccctggt agggttgtaa
     4261 tccttccggt acgacatatt gctgattgag catagttaca gtctctttca tggttccttc
     4321 cttaatcacg aataccggaa gccgacagcg ccaccacttt gcgcgcgtgg tcgataatcg
     4381 ggccgtcaat cattttgccg ttgagtgaaa cgacgcccag accgcgagac tcagcctctt
     4441 cagcggcggc aatcacctcg tgcgcatgct caacttcttt acgcgtcgga gaataagcct
     4501 gatgtaacag ctcaatctga cgtggattca ctaaggactt accgttaaaa ccaagccctt
     4561 tcgccaactg cacttccttc aggaagcctt cttcattatt gatatccgac caaacgacat
     4621 cataggcggc aatacccgca acgcgcgccg catgcagcac tgcgcagcgg gcgtagaaca
     4681 gctcggtgcc atcgccccgg ctggtgccca tatccatcac gtaatcaaat gccgccagcg
     4741 caattgccac catgcgcggg ctggaggtgg cgatgtcgac ggcattgacc acgcctttcg
     4801 ctgattcgat cgccgccatc agcctggtac tgccgacttc acgtccacat tcacgttcga
     4861 tccgttcaac ctgcgcttcc agctccagca catcgttttt gctgtcggtt ttcggcagac
     4921 gcacgatatc cgcgccacca cgcacgacgg cctcaagatc ggccagaccg aatggcgtgt
     4981 tcagtggatt aatgcgcacc actttttcaa catcctgata gaacggatgt tgaagcgcgt
     5041 gatggactaa aagacgggcg gtatctttct cacgtaatgc tacggcgtct tctaagtcga
     5101 acatcaccgc gtccgcacca tagacaaacg aggtgctcaa catggccgca tttgcgccgg
     5161 ggataaacaa catactgcga cgaggtctca taacgcactc cattgaattt ccgtttgttc
     5221 tgcagcgcgt aacgccgccg cctgcactcg ggcgcgtaaa atacactcca gcgcgccttt
     5281 gtcatcgacg ctaaccagcg cgcgttcaac gcccagcttc gccagcgttt cccgaaccac
     5341 ctgctcaatc gccgcgccaa actgctgctt caccagactc tctagctcca gccgaattcc
     5401 tggctcgctg gatggaccaa tcctgatcat cacatcgctg gattccagcg tgcctgccag
     5461 ggcatcttta atgattttca ttagttatgt tccttgttaa cggtgttacg tcatatggtt
     5521 tcagtgtgtc tggcggcatg ccgctgcaga tatgccaggg tgccagcagg caccagcgcg
     5581 cttattgccg gccaattacg ttcgctatac agttttctga cgcgagaggc ggaaatagcc
     5641 gtgccgtttt tctccacccg cgccagctcg acgacctcaa taaccgggcc gctgcgcttc
     5701 ggatcgtgta aaatgtcgtg catccgctgg ttataggcac aggtcagagg acaaaacggc
     5761 tcactgccga caaaacgatg ggtaatcccc agcgctggag ccagatgttc acggaagagt
     5821 tgcagatcga tctggcaatg gcagtcgtcc acaacccctt tttctttgag gaaatagccg
     5881 ggaaacgtcg cacgcgagat catataagcg gagccggaat gcaacgtgac gttgtcaatg
     5941 cccgcgattc cttgttcgat cagcgcccaa cggtcggtat aggaaaaaaa tgaagcatct
     6001 tctttgacta caaacagatg caaccagtca caggccgcag ccgcttgctc caccagataa
     6061 cggtggccca aggtaaacgg attggcgttc atgacaatgg cgccgatcgt ttttcccggt
     6121 tgacgataaa gcgccagttg gcgacaaaag cgcgctaacc gttcactgct gttctccatt
     6181 aacaccgcca gctcacctgc ctgcgcaatg ggccaaaacc ccgcgccaga aaacagcaac
     6241 cgattttgcg gcttagtgaa caggaaaagc tcgctgcggt ttaactcgta ggccaatgta
     6301 agcagctcag tcagcagttt gaggctgagc ccttcccctt gtaaaaccgg ggaaacggcg
     6361 atgcatttca gtacgtttcc ggccagcgag ccgcatccaa ctatctcacc ctgccaatat
     6421 gcgcataccg cgatttcaca atcatcttcc agggcgagtc ccacgccctc cagaaacatg
     6481 gcgaccgact cgcgacgcaa tacatccttt tgcaaataaa tgcgtttaaa tattagattc
     6541 actctattct gcatccgtca gcaaaataac gttgcatatt tcgccagcgt ttgtattact
     6601 cgtctggaat agacatcaca ctttccccct tgcttttata agctttatgg tttttatttc
     6661 cttaattaac cagagttaat aaaaataatt aaattaatta aaaacacaac cattcagtga
     6721 agatagtcac atctcacggt tcattgaatt tattagtatg cgcgggtctt gttacccatc
     6781 aatacacagg aaaatgttta tgaccaacat gacccaggct tcggcgacgg agaaaaaggg
     6841 ggccagcgat ttactcagat tcaaaatctt tggtatgccg ctaccgcttt atgcctttgc
     6901 attaattact ttattactgt ctcatttcta taatgctata ccgactgact tagtcggtgg
     6961 ttttgctctt atgtttgtta tgggggccat ttttggtgaa atcggcaaac gtttaccgat
     7021 cttcaataaa tatattggcg gcgcaccggt tatgatattt ctggttgcag cttattttgt
     7081 ctatgctggc atatttacgc agaaagaaat tgatgcgatc agcaacgtaa tggataaaag
     7141 caacttcctt aacctgttta tcgcagtgtt gatcacaggc gcgatcctgt cggtaaaccg
     7201 taagctgcta ttaaaatcac tgctgggcta tatcccaacc atcctcgccg ggattgtcgg
     7261 cgcgtccctt ttcggtatcg tcattggttt gtgcttcggt atcccggtcg accgtatcat
     7321 gatgctatac gttctgccga ttatgggcgg tggtaacggc gcaggcgccg tgcctctgtc
     7381 tgaaatttat cactcggtta ccggacgttc tcgcgaagag tattactcaa cggctattgc
     7441 tattctgacc attgcgaata tcttcgccat tattttcgcc gccctcctcg atatgatagg
     7501 caaaaaatac acctggctta gcggtgaagg tgaattggtt cgtaaggctt ccttcaaaac
     7561 cgaagatgat gaaaaggccg gtcagattac ccatcgtgaa acggcggttg gcatggtgtt
     7621 atccaccacc tgcttcctgc tggcctatgt tgttgccaag aaaattctgc caagcatcgg
     7681 cggcgtctct attcactact tcgcctggat ggtcctgatt gttgctgcgc tgaacgcatc
     7741 aggtctttgc tcaccggaga ttaaagccgg ggcgaaacgt ctttctgact tcttctccaa
     7801 acaactgctg tgggtgctga tggtaggtgt gggtgtttgc tacaccgatc tgcaagagat
     7861 catcgatgcc ctgacgttcg cgaacgtcgt tatcgccgcg atcattgtgg tcggcgctgt
     7921 cgttggcgca gctatcgggg gctggttgat tggcttctac ccgattgaat catccattac
     7981 tgcgggtctt tgtatggcca accgcggcgg ctccggcgat ctggaagtgc tctccgcctg
     8041 taaccgtatg aacctcattt catatgcaca aatttcctct cgtctgggcg gcggtattgt
     8101 gctggttatc gctagcatcg tgttcagcat gatggtgtaa aaaaacgcac ggcggtgtct
     8161 ttgccgcaaa cgacctggag aaaagtagag gccaaagcca gaggtggcca agggaaatcc
     8221 actctactcc ttagccggat tcaccaggaa ggttgtcgtc aaggccaccg tcgtgcctct
     8281 cattatggaa aatgattcat gaatgaagct gtattactgg gtgaaggttt caccctgatg
     8341 tttttaggga tggggttcgt actgag
//
LOCUS       DAJVSD010000195         8329 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.195, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000195 DAJVSD010000000
VERSION     DAJVSD010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8329
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.195"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            127..1890
                     /locus_tag="OQP62_003464"
                     /pseudo
     CDS             127..1890
                     /locus_tag="OQP62_003464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459238.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chitinase"
     gene            1966..4107
                     /gene="ldcC"
                     /locus_tag="OQP62_003465"
     CDS             1966..4107
                     /gene="ldcC"
                     /locus_tag="OQP62_003465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine decarboxylase LdcC"
                     /protein_id="HCS1722915.1"
                     /translation="MNIIAIMGPHGVYYKDEPIKELERALQSLGFQIIWPQNSVDLLK
                     FIEHNPRICGVIFDWDEYSLDLCSEINQLNEYLPLYAFINTNSTLDVSVHDMRMALWF
                     FEYALGLAEDIATRIHQYTNEYLDNITPPFTKALFTYAKEGKYTFCTPGHMAGTVYQK
                     SPPGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTN
                     GTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIP
                     KREFTRDSIARKVAETAQAQWPVHAVITNSTYDGLLYNTNWIKQMLDVPSIHFDSAWV
                     PYTHFHPIYQGKSGMSGDRVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEA
                     FMMHTSTSPSYPIVASIETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDSWF
                     FDIWQPEEVDEAECWPVTPGETWHGFTDADDDHMFLDPVKVTILTPGMDEQGNMSEEG
                     IPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAYDLNLRV
                     KNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRQHDLPELMLRAFEVLPEMIMTPHQAW
                     QRQIKGEVETVALDQLPGRVSANMILPYPPGVPLLMPGERITQQSRAVLDFLLMLCSI
                     GQHYPGFETDIHGAKRNEDGVYQVRVLKHAC"
     gene            4163..4552
                     /locus_tag="OQP62_003466"
     CDS             4163..4552
                     /locus_tag="OQP62_003466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HCS1722916.1"
                     /translation="MLGLKQVHHIAIIATDYAVSKAFYCDILGFDLLSEAWREERDSW
                     KGDLALNGQYVIELFSFPFPPARPSRPEACGLRHLAFSVENVENAVAHLEKHQVKCEP
                     IRIDPYTGKRFTFFNDPDGLPLELYEQ"
     gene            4615..5907
                     /gene="tilS"
                     /locus_tag="OQP62_003467"
     CDS             4615..5907
                     /gene="tilS"
                     /locus_tag="OQP62_003467"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HCS1722917.1"
                     /translation="MTTLTLNTSLLSSRRILAAFSGGLDSTVLLHQLVLWRERHPDVT
                     LRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVERVTLADNGLGIEAHAREARYRAF
                     AQTLLPGEVLATAQHLDDQCETFLLALKRGSGPAGLSAMGERSPFAGTLLLRPLLRET
                     RKTLEQWAVRHGLCWIEDESNQDDAYDRNFLRLRALPLLQQRWPHFPAAVARSATLCA
                     EQERLLDELLASDLTDCITTEGTLRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDAL
                     ERIWQEVALARDDASPCLRFGDHEIRRYQSQLWWIKTVAGQHETTVAWPVWQTPLALP
                     AGLGTVQLVPGGELRRPREEESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRR
                     DTTPLLFYGETLIAAAGVFVTREGAAEDKEGVSLVWHA"
     gene            complement(5991..6251)
                     /gene="rof"
                     /locus_tag="OQP62_003468"
     CDS             complement(5991..6251)
                     /gene="rof"
                     /locus_tag="OQP62_003468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rho-binding antiterminator"
                     /protein_id="HCS1722918.1"
                     /translation="MSMNETYQPINCDDYDSLELACMHHLILTLTLKDGEVLQAKAND
                     LILRKNVEYLLAEVSGESCELRLDKIASFSHPEIGTVVVSES"
     gene            complement(6238..6438)
                     /locus_tag="OQP62_003469"
     CDS             complement(6238..6438)
                     /locus_tag="OQP62_003469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeP family protein"
                     /protein_id="HCS1722919.1"
                     /translation="MEKYCELVRKRYAEIASGDLGYVPDALGCVLKVLNEVAADSALS
                     ESVREKAAYAAANLLVSDYVNE"
     gene            6636..7181
                     /locus_tag="OQP62_003470"
     CDS             6636..7181
                     /locus_tag="OQP62_003470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeQ family protein"
                     /protein_id="HCS1722920.1"
                     /translation="MALKATIYKAVVNVADLDRNRFLDAALTLARHPSETQERMMLRL
                     LAWIKYADERLQFTRGLSAEDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQASDV
                     ALFAYNSRAAQIWWQQHQSKCAQFANLSVWYLDDGQLAQLSEFADRTMTLQATIQDGA
                     IWLSDARNNLEIQLTAWQQPS"
     gene            7178..7600
                     /gene="arfB"
                     /locus_tag="OQP62_003471"
     CDS             7178..7600
                     /gene="arfB"
                     /locus_tag="OQP62_003471"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HCS1722921.1"
                     /translation="MIAISRTVSIADNELEITAIRAQGAGGQHVNKTSSAIHLRFDIR
                     ASGLPEYYKQRLLTASHHLISDDGVIIIKAQEFRSQELNREAAIARLVAVIKELTAEQ
                     KSRRATRPTRASKERRLSSKAQKSSVKALRGKIRRPLD"
     gene            7632..>8329
                     /gene="nlpE"
                     /locus_tag="OQP62_003472"
                     /gene_synonym="cutF"
     CDS             7632..>8329
                     /gene="nlpE"
                     /locus_tag="OQP62_003472"
                     /gene_synonym="cutF"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006899150.1"
                     /note="NlpE, an outer membrane lipoprotein, interacts
                     directly with CpxA, the sensor histidine kinase of the Cpx
                     system for response to envelope stress; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response activation lipoprotein
                     NlpE"
                     /protein_id="HCS1722922.1"
                     /translation="MVRTAILSVAAACTLFALIGCNNRAEVDALQPAQAAELKPMQQS
                     WRGVLPCADCEGIETSLFLEKDGTWVMNERYQGVREEPSSFASYGTWARTADKLVLTD
                     SNGEKSYYRAKGNALEMLDREGNPVASQLNYTLVPVTASLPVTPMPLRGMYVYRADAA
                     TFTDCATGKRLPVASNAQLERGYLAAKGEAEKPVLLTVEGHFVFAANPDTGEPVKTLI
                     ADKNVKFAPGKDCT"
BASE COUNT         1950 a         2096 c         2398 g         1885 t
ORIGIN      
        1 acgaggaaaa atgagacgcc gatgagctga tgtgattaaa cgcaacggca tgttctccct
       61 gacactgtag caactgccag gcgtgtggcc agggcaggca gtgaactacc cttcaaggag
      121 aaaattatgg gattgcaaaa aacactggcg ctcagcgccg tagcggcagg gatcatgttg
      181 agcttatccg gtgcgcaggc cgcgccgctg cttagcagta gtgagccaat gaccattaac
      241 gccagcgatc tggcggcgaa agagaaagcg ctgacggatt ttccgttaat ggaggcagtg
      301 aaatcctcta tccagacgtt ggataacagc gcggtcgaac aaatcgaacc ggggcgcgcc
      361 gctaacccgg caaacgtaaa acgcgttgaa agtattctga aagaggccga ctgggattat
      421 ctgttcccga tgcgcgcgcc ggaatacact tactctaact tcctgaaagc gataggtaaa
      481 ttcccggcgg tttgtggtac ctacaccgat ggacgcgata gcgacgctat ctgccgtaaa
      541 accctggcta ctatgtttgc gcattttgcc caggagacgg gcggtcacga aagctggcgt
      601 gacattccgg aatggcgtca ggcgctggtc tatctgcgcg aagtcggctg aacagaaggg
      661 caaaaaggcg gctacaacgg cgaatgtaac ccggatgtat ggcagggcca gacctggccg
      721 tgcggtaaag ataaggacgg cgatttcctc agctattttg gccgcggggc aaaacagctt
      781 tcttataact acaactatgg gcctttctct gacgcgatgt atggcgacgt tcgccctctg
      841 ctggataaac ccgagctggt ggcggatacc tggatgaacc tggcgagcgc cgtcttcttc
      901 tttgtgtatc cgcagccgcc gaagccgtct atgctacatg tgattgacgg tacctggcag
      961 ccaaacgatc gcgataaagc aaacggcctg gtatcaggtt tcggcgtcac tattcagatc
     1021 atcaatggcg gcgtggagtg cggcggcgca gatgagaatg cgcagtcgct taaccgtatc
     1081 gcctactaca aagagtttgc caactacctg aaagtgccgg tgccggctga cgaagtgttg
     1141 ggctgtaaaa agatgaagca gttcgatgaa ggcggcgctg gcgcgttacc gatctattgg
     1201 gaacaagact ggggctggag cgccgatact gcggacggta aaacctattc ctgccagtta
     1261 gttggatatc agacgccgta taccgccttt aaagagggcg actacacgaa atgtgtacag
     1321 cattatttca acgttaatgt cgtcgatgat aacggaacca ctgaaccgga tgtcacgcca
     1381 actccggcgc cagtgacgga tgaaaacgtg gcaccagtcg cgcgcattgc cgggccggtc
     1441 ggggcggtgg aagccggtag ccaggtttca ctcaacgcgg aaggatcgac cgacgcgaat
     1501 ggcgacaagc tcacctatac ctggatgtcg caggatggca aaacgctgag cggccaggat
     1561 aaagccgttg tgattttcaa cgcgccggat gtcactcaga acacccagta tgtggtgaat
     1621 ctgaccgtta gcgacggtac gctctccagt acagcggttt atacgctgaa tgtgaaagcg
     1681 aaggccgccg ctgcggatga cgaagataag accaccagct accctgcctg gagcagcagc
     1741 cagaaatgga atccgggcga catcgtcaac agtaatggcg cattgtacca gtgcaaaccg
     1801 ttcccggaag gctcatggtg taatgttgcg cctgcctact atgagcccgg cgtagggatt
     1861 gcctgggccg atgcatggaa cgcattgtaa taagataaat cctgtcggtg ctttgcatcg
     1921 gcaggattgt tactatgctt atctcaggtt ttttcaggag aaagcatgaa catcatcgcc
     1981 attatggggc cgcacggggt ttattataaa gatgaaccca tcaaggagct tgagcgtgca
     2041 ttacaatccc tgggatttca aattatctgg ccgcaaaata gcgttgactt gttgaagttt
     2101 attgaacata acccgcgcat ctgcggcgtt atttttgact gggatgaata cagtctcgac
     2161 ctttgtagcg aaatcaacca gctaaatgaa taccttcctc tctacgcctt tatcaatacc
     2221 aactccacgc tggacgttag cgttcacgat atgcgcatgg cgctgtggtt ttttgagtat
     2281 gcattggggc tggctgaaga tatcgcgacg cgcattcatc aatatacaaa cgaatatctc
     2341 gataatatta cgccgccgtt taccaaagcg ctgtttacct acgccaaaga aggaaaatat
     2401 accttttgta cgccggggca tatggcggga acggtgtatc agaaaagccc gccaggctgt
     2461 ctgttttatg acttttttgg cggcaatacc ttaaaggccg atgtgtcgat ttcggtgact
     2521 gaactgggat cgctgctgga tcacaccggg ccgcatctgg aagcggaaga gtatatcgcc
     2581 cgtacttttg gcgccgagca gagttatatg gtgacgaacg gtacgtcgac ctcgaataaa
     2641 attgtcggta tgtatgccgc gcctgcggga agtacgctac ttattgatcg taattgccat
     2701 aaatcgctgg cgcatttgct gatgatgagc gatgtggtgc ctctctggtt gaagccgacg
     2761 cgcaatgcgc tcggcattct cggcggtatt cctaagcgtg aatttacccg cgacagcatt
     2821 gcgcgtaagg tggcggaaac cgcgcaggcg caatggccgg tgcatgcggt tatcaccaat
     2881 tcgacttacg atggtctgct gtataacact aactggatca agcagatgct ggacgttccc
     2941 tcgatccatt ttgattccgc ctgggtaccc tatacccatt tccatccgat ctaccagggg
     3001 aaaagcggga tgagcggcga tcgggtgccc ggaaaagtga ttttcgaaac gcaatccacc
     3061 cataaaatgc tggcggcttt ttcgcaggcg tcgcttattc atatcaaagg ggaatatgac
     3121 gaagagacgt ttaacgaagc gtttatgatg cacacttcta catcgccgag ctatcccatt
     3181 gtcgcctcta tcgagaccgc ggcggcgatg ctgcgcggca atccagggaa aagattgatt
     3241 aatcgttcgg tggaacgggc gctccatttt cgtaaagaag tacagcggtt acgtgaagag
     3301 tccgatagct ggttctttga tatctggcag ccggaagagg ttgatgaggc cgaatgctgg
     3361 ccggtcacgc cgggagaaac ctggcatggc ttcaccgatg ctgatgacga tcatatgttc
     3421 ctcgatccgg ttaaggtgac aatcctgacg ccggggatgg atgaacaggg caacatgagc
     3481 gaagagggga tacccgccgc gctggtggcg aagttcctcg atgagcgagg cgtggtggtg
     3541 gaaaaaaccg ggccgtataa tctgctgttt ttgttcagca tagggattga taagacccgt
     3601 gcgatggggc tgctgcgcgg actgacggaa tttaaacgcg cctacgatct taacctgcgc
     3661 gtcaaaaata tgttgccgga tctgtatgcg gaagatccgg atttttatcg caatatgcgc
     3721 attcaggatc tggcgcaggg gatccataaa ctgatccgcc agcacgatct tccggagctg
     3781 atgctgcggg cgttcgaggt tttaccggag atgatcatga ccccgcacca ggcctggcag
     3841 cgtcagatca aaggtgaggt ggaaaccgtg gcgctcgatc aactgccagg gcgcgtttcc
     3901 gcgaatatga tcctgcctta tccgccaggc gttccgctgt tgatgcccgg cgagaggatc
     3961 acgcaacaga gtcgggccgt gctcgatttt ctgctgatgc tctgttcgat tggccagcat
     4021 tatcccggtt ttgaaacgga tattcacggc gcgaaacgga atgaagacgg ggtgtaccag
     4081 gtacgagtct taaaacacgc ctgttagctt gcctgacgag aatgtgacga gtaacgtact
     4141 gataatcaat aaaggagacg ctatgctggg attaaaacag gttcatcaca tcgcgatcat
     4201 tgcgacagac tatgcggtga gcaaggcgtt ttattgcgat attctggggt tcgatctgct
     4261 aagcgaagcc tggcgggaag agcgtgactc gtggaagggc gatttggcgc taaacgggca
     4321 gtatgtgatt gagcttttct cttttccctt ccctccggcg cgtccaagcc gacctgaagc
     4381 ctgcggtctg cgccatctgg ctttcagcgt ggaaaatgtg gaaaacgccg ttgcgcatct
     4441 ggaaaagcat caggttaagt gcgaaccgat acgcatcgat ccgtataccg ggaagcgctt
     4501 tacttttttc aacgatccgg acggtttacc gcttgagctg tatgagcagt aaggcttgtc
     4561 attaagacgc tcgccaggta acgttgccgg gctaagtcac tataagcatg gatcatgacc
     4621 actctcacgt tgaatacctc gttactctct tctcgccgta ttctggctgc ctttagcggt
     4681 ggcctggatt ctacggtgct tctgcatcaa ctggtgttgt ggcgagaacg ccatcctgac
     4741 gtcacgctgc gtgctatcca tattcatcac ggtttaagcc ctcatgctga tagctgggtg
     4801 cggcattgcg aaaccgtatg cgaacgctgg caggttccgc tggtagtgga gcgggtgacg
     4861 ttggcggata atggcctggg tatcgaggcc catgcgcgtg aagcgcgcta ccgggcgttc
     4921 gcacagacgc tattgcctgg cgaagtgctg gcaaccgcgc agcaccttga cgatcagtgt
     4981 gaaacattcc tgctggcgtt aaagcgcggc agcggtccgg ccggactttc cgcgatggga
     5041 gaacgctcgc cttttgccgg aactctgctt cttcgcccgc tgttgagaga aacgcggaag
     5101 acgctggaac agtgggctgt gcgtcatggc ttatgctgga ttgaagatga aagcaatcag
     5161 gatgacgcct acgatcgcaa ttttttacgc ctgcgcgcgc ttccgctctt acagcagcgc
     5221 tggccgcatt ttcctgcggc ggtagcccgt agcgcgacgc tctgcgccga gcaagaaagg
     5281 ctgctggacg agcttctggc cagcgatctt acggactgta tcacgacgga gggaacattg
     5341 cggctctctc cattaatgtc gatgagcgat gtgcggcggg cggcgatttt gcgtcgctgg
     5401 ctggcgatgc gtaatgcgcc gatgccctct cgcgacgcgc tggaacgtat ctggcaggag
     5461 gtggcgctgg cgcgcgacga tgcctctccc tgtttacgct ttggcgatca cgagattcgc
     5521 cgttatcagt cgcaactgtg gtggattaaa accgtagccg gacaacacga aacgacggtc
     5581 gcctggcccg tctggcaaac accgctggcg ctgcctgccg gcttagggac ggtacagctc
     5641 gttcctggcg gcgaactgcg ccgaccgcga gaggaagaat ccgtcagcat tcggtttaaa
     5701 gcgccagggt tgctacacat tgtgggacgt cacggcggac gtaaattaaa gaaaatctgg
     5761 caggagcagg ggatcccgcc ctggcgacga gacaccacgc cgctgttgtt ttacggcgaa
     5821 acgctgattg cggctgcggg tgtttttgtg acgcgtgagg gagcagcaga agataaagaa
     5881 ggggtgagtc tggtttggca tgcctgatgg cgctgcgctt atcaggccta cgtatcgcat
     5941 ggaacgtagg ccggataagg tgcttgcacc accatccggc aacaaaatac tcaggattcg
     6001 ctaactacca cggtaccaat ttccgggtgg ctgaaactgg cgattttatc gagacgaagt
     6061 tcacaagact cgccggaaac ctcggcaagc agatactcta cgtttttacg taagatcaaa
     6121 tcgttcgctt ttgcctgcaa aacctcgcca tcttttaacg ttagcgtcag tattaaatga
     6181 tgcatgcagg caagctcaag actatcgtag tcatcgcaat taatgggttg atacgtttca
     6241 ttcattgaca taatcgctca ccagtaagtt cgcggcagca taagctgcct tttccctgac
     6301 cgactctgaa agggcgctat ctgccgccac ttcattaagc actttcaata cacaacccag
     6361 cgcatccggg acatacccta agtctccgct ggcgatttcc gcataccgct tgcgtactaa
     6421 ctcacaatat ttttccacat gccctcctgt cagcattctg acttaaccgt ggatgcaagt
     6481 ctaagcctac gaagttaaat cttgtttagc aaggtgacta taccatactc atttgcgcaa
     6541 tatcagcgcc tgacgcgagt gggtaaaaga ttcgttaaca gccttttagc gcggttttcg
     6601 ctacaatggg cgcctgattc gaaaggagtt ttctcatggc gcttaaagcg acaatttata
     6661 aagccgtcgt caatgtggct gaccttgatc gcaaccggtt tctggatgcg gcattgacgc
     6721 tggcgcgtca cccttctgaa acgcaggagc gcatgatgct gcgcctgttg gcatggataa
     6781 aatatgctga tgaacggttg cagtttacac gcgggctcag cgcggaagat gagccggagg
     6841 cctggctgcg caacgatcat ctgggcatcg atctctggat agagctgggg ctgccggatg
     6901 agcgccgtat taagaaagcc tgtactcagg cgagcgacgt cgcgctcttt gcttataact
     6961 cccgggcggc gcaaatctgg tggcagcagc atcaaagcaa gtgcgcgcag ttcgctaacc
     7021 tgtccgtctg gtatctggat gacgggcagc tggcgcagct cagtgaattt gccgatcgta
     7081 ccatgacgct acaggcgacg attcaggacg gcgcaatctg gctttctgat gctcggaata
     7141 atctggaaat acagctaacc gcctggcaac agccctcatg attgccatct cccggacggt
     7201 ctccatagcc gataatgagc tggaaattac ggccattcgc gcgcagggcg cgggtggtca
     7261 gcacgtaaat aagacctcta gcgcgattca tttgcgcttt gacattcggg cctctggcct
     7321 gccagagtat tataaacagc gtttgctgac ggccagccac catctgataa gcgatgatgg
     7381 cgtcattatc attaaggcgc aggagttccg gagccaggag ctcaaccggg aagcggctat
     7441 cgccaggctg gttgccgtca taaaagaatt aaccgcggag cagaaaagcc gtcgcgcaac
     7501 ccgtccgacg cgtgcctcga aagagcgccg cttgtcctca aaggcgcaaa aatcttctgt
     7561 aaaggcgctt cgcggcaaaa ttcgtcgtcc actggattga cgggcaggaa tagcaatttc
     7621 ataaggattt tatggtgaga acagcaatat tgtcagtagc ggcagcctgt acgctatttg
     7681 cattgatagg gtgtaataac cgtgcggaag ttgacgccct gcaacctgcg caggcggcgg
     7741 aattaaaacc catgcagcaa agctggcgcg gcgtgctgcc ctgtgcggat tgtgaaggta
     7801 ttgaaacgtc actgtttctg gaaaaagacg gcacatgggt gatgaacgag cgctatcagg
     7861 gcgtgcgcga agaaccttcc tcttttgcgt catacggtac ctgggcgcgg acggcggata
     7921 aactggtgtt aaccgacagc aatggcgaga aatcgtatta tcgcgcgaaa ggcaatgcgc
     7981 tggagatgct cgacagagaa ggcaatccgg tggcttcgca gcttaattat acgctggtgc
     8041 ctgttaccgc cagcctgccg gtaacgccaa tgccgctgcg tggtatgtat gtatacaggg
     8101 ccgatgcggc gacctttacc gattgcgcga ccggaaaacg gctgccggtc gccagtaacg
     8161 cccagcttga gcgcggctat ctggcggcga aaggtgaagc ggaaaaaccg gtgctgctga
     8221 cggtcgaagg gcattttgtg tttgccgcga atccggacac gggcgagccg gtaaaaacgc
     8281 taatagctga taaaaatgtg aagtttgcgc cgggtaaaga ttgcactca
//
LOCUS       DAJVSD010000196         8303 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.196, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000196 DAJVSD010000000
VERSION     DAJVSD010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8303
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.196"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..515
                     /gene="tviA"
                     /locus_tag="OQP62_003473"
     CDS             <1..515
                     /gene="tviA"
                     /locus_tag="OQP62_003473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001210944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Vi polysaccharide biosynthesis regulator TviA"
                     /protein_id="HCS1722923.1"
                     /translation="NDIYFGVGAAGIIEEVSLITNDRNYLFVNLNRYSLLNALNFFTR
                     MSDINKIIVIISSSRLMPLARFWLTECKNVIAVFDAATSVQDIIRNVSQHQSGEKILT
                     EQRDYRFRINRKDIVKMKYFLSESGMEELQDRFMNSSSTMYRWRKELAVKFGVREPRY
                     LLLPDSVTLL"
     gene            760..2037
                     /gene="tviB"
                     /locus_tag="OQP62_003474"
     CDS             760..2037
                     /gene="tviB"
                     /locus_tag="OQP62_003474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000466893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Vi polysaccharide biosynthesis
                     UDP-N-acetylglucosamine C-6 dehydrogenase TviB"
                     /protein_id="HCS1722924.1"
                     /translation="MFGIDEVKIAIIGLGYVGLPLAVEFGKSRQVVGFDVNKKRILEL
                     KNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVPTPINTYKQPDLTPLIKA
                     SETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGD
                     KKHRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLN
                     IALVNELAIIFNRLNIDTEAVLRAAGSKWNFLPFRPGLVGGHCIGVDPYYLTHKSQGI
                     GYYPEIILAGRRLNDNMGNYVSEQLIKAMIKKGINVEGSSVLILGFTFKENCPDIRNT
                     RIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVGHQQFK
                     QMGSEDIRGFGKDKHVLYDLKYVLPAEQSDVRL"
     gene            2040..3086
                     /gene="tviC"
                     /locus_tag="OQP62_003475"
     CDS             2040..3086
                     /gene="tviC"
                     /locus_tag="OQP62_003475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000127915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Vi polysaccharide biosynthesis
                     UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC"
                     /protein_id="HCS1722925.1"
                     /translation="MTAYEELRTKLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIG
                     LDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVDYVLHQAALGS
                     VPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEERIGR
                     PLSPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLL
                     KDEPIYINGDGSTSRDFCYIENVIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYY
                     LIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADITKIKTFLSYEPEFDIKEGLKQTL
                     KWYIDKHSTLYSSV"
     gene            3110..5605
                     /gene="tviD"
                     /locus_tag="OQP62_003476"
     CDS             3110..5605
                     /gene="tviD"
                     /locus_tag="OQP62_003476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Vi polysaccharide biosynthesis protein TviD"
                     /protein_id="HCS1722926.1"
                     /translation="MNLMKSSGMFTLTAIGSCRIVSPVKRAQPYFNFQANFKRIYGFT
                     HTSSEALQQIRFILGLIDIPEKVRPFIFRPNVNYSNTDVHSRSDFYIIEISSQKKIMA
                     YGFCLQINYLTRHFYEFFSQTERACIYWSLATQGNRHKLLAYLKDDPCFAGMSEDDRA
                     LLSNINVEQMDEHAIEQDMMEIVQLLGRDRVMFMTHVDAVTRAGTVILSRSRLIKNVD
                     TIAARMDIPCVNPTNLMEKWGQKRALEKNGDDLTHYTDMFGDAIVAAIFKGVINNTNH
                     HLDEGRQEKQDQIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFS
                     HLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEE
                     VLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGNAFSEAFHA
                     GIQSQRLNDTFMETALSLAIKFSDELIFMHALEQLLRHESEFALTVLSTIHDTGLVIR
                     TAFCIKNMSYHQALRTSYKDKIHDVFEAWNNTALSLHSVDDFVSLSTSLAYSYSAFMV
                     YPHSRISRFNNEVKMAWRDKLREMYEREDYENILAGAKIVWPLLKFDPVGTVYCARTL
                     VNLGAWKDACTLAHMTLIRNSNITSLQSIMLRSIRHINNIPFLIDLIANVMSITLSFQ
                     NASMNKLFEKECRNVATRALKYVRQKKTEGRLDEALSVLISLKRIEPDVSRLMREYKQ
                     IIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHLRDYTQALQY
                     WQRLEKVNGPTEPVTRQISTCITALQKNTSGKS"
     gene            5605..7341
                     /gene="tviE"
                     /locus_tag="OQP62_003477"
     CDS             5605..7341
                     /gene="tviE"
                     /locus_tag="OQP62_003477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000632615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Vi polysaccharide biosynthesis
                     glycosyltransferase TviE"
                     /protein_id="HCS1722927.1"
                     /translation="MITQEEKLAALGKTCLTLKQEKKLAQAVALIDSELPTEALTSLA
                     MLKKAEFLHDVNETERAYALYETLIAQNNDEARYEYARRLYNTGLAKDAQLILKKVSN
                     GVQKKYNNYLGKINKICDLLERLEGKAIPVGTNTCIIAMKHAILFYRNRQPRQLPVGS
                     FGRLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELR
                     QDFFLKEVLEEQVEVLEIAKITGNLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHL
                     CERKLDYLSVWQDSACLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQAL
                     AVVPGVDFMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQ
                     KTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQ
                     LGILERILFVGASRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAGGSA
                     ECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMV
                     GTFVKTIASQPR"
     gene            7386..>8303
                     /gene="vexA"
                     /locus_tag="OQP62_003478"
     CDS             7386..>8303
                     /gene="vexA"
                     /locus_tag="OQP62_003478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000720235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Vi polysaccharide ABC transporter protein VexA"
                     /protein_id="HCS1722928.1"
                     /translation="MKKIIILLTTFFLLSGCTIPRAVFKSSLINQDDPRYNLVEVTPT
                     LKLSAPDTVPKTIVDPVFAANNWHWTSLAKGDVLHITILSSGGAGYLSNNASGDRADF
                     ENILVTDSNTVQVPYAGTIPVSGLDVTQLADEIKKRLSRVVLNPQVIVTLTARTGAMV
                     TVEGSGKTGRYPLEQSMNRLSHLLATAVAVENTSTDMMEVHVTRQQHYFTARLSDIYQ
                     YPGLDIALQPDDRITLRQVTEYVNVLGAAGVQGKHALVQRHSSVVDALALAKGLNDNL
                     ADPQAIFLYKHNEAEQAKQQMRKLNIYHVD"
BASE COUNT         2359 a         1698 c         1951 g         2295 t
ORIGIN      
        1 cgaatgatat ctatttcggg gttggagctg ctggcattat tgaagaagtg tcactgataa
       61 caaatgacag aaattatttg tttgtgaacc taaatcgcta cagcctgtta aatgccctga
      121 attttttcac gcgaatgagt gatattaata aaataatcgt tatcatttca agttcgcgac
      181 taatgcccct tgcacgtttt tggttgacag agtgcaaaaa tgttattgct gttttcgatg
      241 cggcaacatc agtccaggat attatcagaa atgtcagtca acaccaaagt ggtgaaaaga
      301 tcttgacgga gcagagagat tatcgtttca gaattaaccg taaggatata gtaaagatga
      361 aatatttcct ttcggaaagt ggtatggaag agcttcagga tagatttatg aactcatcat
      421 cgactatgta tcgctggaga aaagaattgg cagtaaaatt tggagtacgt gagccgcgct
      481 atctgttatt gccggattca gttactttac tgtaatgcgg taatttttat tgagtaaaac
      541 acggacaagt atttcgtttc agcacaaaat tattttcgtt actcattggc gttaatacat
      601 atattctcag cgacttctgt tctattcaag taagaaaggg gtacggttat acgttttcat
      661 taaccatact ggctgctacg gccaggggcg gtagcgtatc tgaataaaca cctagaatta
      721 actttgtaaa tataaaattt tagtaaagga ttaataagag tgttcggtat agacgaggta
      781 aaaatcgcga ttattgggct gggatatgtt gggcttcctc tggcagttga atttggcaaa
      841 tctcgtcagg ttgttggctt cgacgttaat aaaaagcgta ttcttgaatt aaagaatggg
      901 gtggatgtca atctggaaac cactgaagaa gaattacgtg aggctcgtta tctgaaattt
      961 acttccgaga ttgagaagat caaagaatgt aatttttaca tcatcaccgt cccgacgccg
     1021 ataaatacct acaagcaacc agacctcacc ccactaatca aggcgagtga aaccgttggt
     1081 acagtgctga atcggggaga tattgtggta tatgaatcta cggtatatcc gggatgtacc
     1141 gaagaagaat gcgtgccgat ccttgctcgt atgtccggaa tgactttcaa ccaggatttc
     1201 tatgtcggtt atagcccgga aaggatcaat cccggtgata aaaagcaccg tttaaccaac
     1261 atcaagaaaa tcacctccgg ttcaaccgca cagatcgccg aacttatcga tgaagtatat
     1321 cagcagatca tcagcgcagg tacatataaa gcagagagca tcaaagttgc tgaggcagcg
     1381 aaggtgattg aaaatacgca acgcgatctg aatattgcct tggtcaatga gctggcgatt
     1441 atttttaatc gtttaaatat cgatactgaa gccgtgctac gtgccgctgg cagcaaatgg
     1501 aatttcctgc cattccgtcc gggactggtc ggtggtcact gtattggcgt agatccctat
     1561 tatctgacac ataaatctca gggcattggc tattatccag aaatcatact tgcaggacgc
     1621 cgcctgaacg acaacatggg caactatgtc tccgagcagt tgatcaaagc aatgatcaaa
     1681 aaaggaatta acgttgaggg ttccagcgtg ctgattctcg gctttacctt taaagaaaac
     1741 tgtccggaca tcagaaatac acgcattatt gatgtggtaa aggaactcgg taaatatagt
     1801 tgtaaagtgg atatttttga tccatgggtg gatgccgaag aggtaagacg agagtatggc
     1861 attatcccgg tatcggaagt caaatcaagc cactacgatg cgatcattgt tgcagtagga
     1921 catcagcaat ttaaacagat gggaagtgag gatattcgcg gcttcggaaa agataaacat
     1981 gtactttatg atttgaagta tgttcttccg gctgagcagt cagatgtgag attgtaatca
     2041 tgacggctta cgaagaacta cggaccaaac tggttctggc accaaagcgc tggctgatca
     2101 ctggcgtagc aggctttatt ggctccggct tattagaaga attactcttt ctcaaccaga
     2161 ctgtcattgg actggataac ttttccaccg gttatcagca taatctagac gacgttcgca
     2221 cgtccgtcag tgaggagcaa tggtcgcgat ttatttttat tcagggtgac atcaggaaat
     2281 ttactgactg tcagaaagcg tgtaagaacg ttgactatgt tctccaccaa gccgcgctag
     2341 gaagcgtgcc acgttcccta aaggatccca tcgcgactaa tagcgccaat attgatggtt
     2401 ttttaaatat gttgacggcg gcgagagatg ctcatgtctc tagtttcacc tacgccgcaa
     2461 gcagtagcac ctatggagac catcccgatt tacctaaaat tgaggaacgg atcggtcgac
     2521 cactcagccc gtatgcggta acaaaatacg tcaatgaatt gtacgctgat gtgtttgcac
     2581 gtagctatga atttaacgct attggcctac gctactttaa tgtctttggt cgccgccaaa
     2641 atcctaacgg agcgtactcg gcagttattc ctcgctggat actatcgctt cttaaagatg
     2701 aaccaattta tatcaatggc gatggctcaa caagcaggga tttttgctat atagagaatg
     2761 tgattcaggc caatctatta tcagcaacaa ctaatgattt agcctctaaa aataaggtct
     2821 ataatgtggc agttggagat agaacttcgt taaatgagct ttattatcta attcgcgatg
     2881 ggcttaattt atggcggaac gaacaaagta gagctgaacc aatttataaa gattttcgtg
     2941 acggtgacgt taagcatagc caggcagata ttaccaaaat aaaaacattt ctttcatatg
     3001 agcctgaatt tgatatcaaa gaaggactta agcagactct aaaatggtat atcgataaac
     3061 attctacttt gtattcctcg gtataactac tcactttcct ttcacgtgga tgaatttaat
     3121 gaaatcgtca gggatgttta cgcttacagc cattggcagt tgccgtattg tgagtccggt
     3181 aaaacgagct cagccttatt ttaattttca ggcaaacttt aagagaatat atggttttac
     3241 gcatacgagc agcgaggcat tacagcagat tcggtttatt ttgggcttga tagacattcc
     3301 tgaaaaggtc cgaccattta tttttagacc taatgtaaac tattcaaaca ccgacgtaca
     3361 tagtcgttct gatttctata tcattgagat ttcaagtcag aagaagatta tggcctatgg
     3421 gttctgctta caaataaatt atttaactcg tcatttctat gaatttttta gccaaacaga
     3481 gcgggcgtgc atatactggt cgttggccac gcaaggaaat cgacacaaac tgctggccta
     3541 tctcaaagac gatccctgtt ttgccggaat gtcggaagac gatcgtgcct tattaagcaa
     3601 tatcaatgtc gagcagatgg atgagcatgc tatcgaacag gatatgatgg aaatcgttca
     3661 gcttcttggt cgcgatcgcg ttatgtttat gacacatgtt gatgccgtga ctcgtgctgg
     3721 aaccgtcatt ctatcccgta gtcggttgat taaaaatgtc gacaccatcg ccgccaggat
     3781 ggatattccc tgcgttaacc cgacaaattt gatggaaaag tgggggcaga aacgagccct
     3841 ggaaaaaaat ggcgacgatc ttactcatta taccgatatg tttggtgacg cgatcgttgc
     3901 ggctattttt aagggagtga tcaataatac taatcatcat cttgatgagg ggcgacaaga
     3961 gaaacaggac caaatacgtg agattacctt atcgatcact aagcagcttg cagatggcga
     4021 cattattgct gcatcacaac aactttttgc cgcattaaga aatcagcagc aagatcccgt
     4081 tctaatccaa cttcggtccg taatcttcag ccatttaggt tattatgaac aggcttatca
     4141 ggatattagt gatgttgaga aaattatcgg tacgactgac agtacattac gttgtcggct
     4201 gaggtctcta catggattag cgcgttggcg ggaagcctta tcgacggcag agatgatgct
     4261 ttccaatgaa attgaagatg aagaagtcct taccgttgcc gccggctcag ccgatgcttt
     4321 acagctgttt gataagtcat atcattattg gaaacgtgta ctattattga atcctgaaac
     4381 tcaaagcgga tgggttaatt tcctgagcag cacgcaatat ttcaatgatg gcaacgcatt
     4441 ctctgaagct ttccatgccg gcattcaatc gcagcgccta aatgatacgt ttatggaaac
     4501 ggcgttatct ttggcaatca aattcagtga tgaattgatt ttcatgcatg cgctcgagca
     4561 gctactccgc catgagtcag aatttgcgct gacggtattg tcgacgattc atgataccgg
     4621 tctcgttatc cgcacagctt tctgcatcaa gaatatgagc tatcatcaag cgcttcgcac
     4681 ctcgtataaa gataaaatcc acgacgtttt tgaggcatgg aacaataccg cgctgtcgct
     4741 acattcggtt gatgattttg tctcactgag tacttcgcta gcctatagct actctgcatt
     4801 tatggtttat ccccattcac gtatttctcg ctttaataat gaagttaaaa tggcatggcg
     4861 cgataaatta agagaaatgt atgagcgtga ggattatgaa aatatcctgg caggggcgaa
     4921 aatagtgtgg ccacttctga agtttgatcc cgttggcacc gtatattgtg caagaacgct
     4981 ggtgaatctt ggtgcctgga aagacgcgtg cacgttggcc cacatgacct tgattcgtaa
     5041 ctcgaacatt accagcctgc agtcgattat gttacgcagc atacgtcata ttaacaacat
     5101 tccgttcctc attgatttga ttgctaacgt catgagcatt actctatcat tccagaatgc
     5161 ctcaatgaac aagttgtttg agaaagagtg tcgcaatgtt gcaaccagag cccttaaata
     5221 tgtacgccag aagaaaactg aagggcgtct ggatgaagca ttgtctgtat tgattagcct
     5281 gaaacgaatt gagcctgatg tttctcgtct gatgcgtgaa tataagcaaa ttatcagatt
     5341 atttaatgag tcacggaagg atggcggtag cactatcacg tcttatgaac atctagacta
     5401 tgcgaaaaaa ttactcgttt ttgatagcga aaatgcctat gccttgaaat atgccgcatt
     5461 aaatgcaatg catttacgcg actacacgca ggctttgcag tattggcagc gactggagaa
     5521 agtgaatgga ccaacggagc cggtgacaag gcagatctcg acctgcataa ccgcattaca
     5581 aaaaaataca tcagggaagt cgtaatgatt acgcaggaag aaaagttagc tgcactagga
     5641 aaaacgtgtt taacattaaa acaagagaag aagcttgcgc aagctgttgc gttaattgac
     5701 agtgaattac cgactgaggc tttaacttca ttagcgatgc taaaaaaagc agagtttctt
     5761 catgatgtca atgaaacgga gcgtgcatac gcgctctacg aaacgctgat tgcacaaaac
     5821 aatgatgaag cacgttatga gtatgcacgt cgtttatata atacggggct agccaaagat
     5881 gctcagctaa ttcttaaaaa ggttagcaat ggtgtgcaga aaaaatataa caattattta
     5941 ggcaaaataa ataagatctg tgatttgctt gaacgccttg aagggaaagc gatccctgtg
     6001 gggaccaaca cctgtattat tgcaatgaag catgccatct tgttctatag aaatcgtcaa
     6061 cccaggcagc ttcccgtcgg gtctttcggt cgtcttgcgc tctgtactgg ctcgctaggt
     6121 agcggtggtg cagagcgtca gatttccagg ctggctatcg aaatcgccag aaaatatcgg
     6181 caaaagggga aaattggcgg cctgaaagta gaagaaccgg tagaactaat tattcgctcc
     6241 ctgacaccgg aactcaggca agactttttc ctgaaagaag tgctggaaga acaggtcgag
     6301 gttcttgaaa tcgcgaagat taccggaaac ttgtttgacg atgcgacaat agaatctcca
     6361 gagttgcgct tattgctatc gcatctaccg ccggtgtgta aatacggcat caagcatctg
     6421 gtcccccatt tatgcgagcg caagctggat tatctctccg tttggcagga tagcgcttgt
     6481 ctgatgattg cgcttgcagc attgattgct ggcgtgccca gaattcaact gggattacgt
     6541 gggttaccgc cggtggttag aaagcgtctg ttcaagccgg aatatgagcc tctctaccag
     6601 gcgctggcgg tcgtgcctgg cgttgatttt atgagtaaca accattgtgt gactcgccat
     6661 tatgccgact ggctgaagtt ggaggcgaag cacttccagg ttgtatataa cggcgtctta
     6721 ccgccatcta ctgaaccctc ttctgaggtg ccacataaaa tctggcagca gtttacgcaa
     6781 aaaacccagg atgcggacac gactattggt ggcgttttcc gctttgtagg cgataagaac
     6841 ccttttgcat ggattgattt tgcagcacgc tatttacaac accaccccgc cacgcgcttt
     6901 gtgctggtag gcgatggtga tttacgcgct gaagcgcaga aacgcgccga acagttaggg
     6961 attctggaga gaatactatt cgttggcgcc tcgcgtgacg tagggtattg gctgcaaaaa
     7021 atgaatgtat tcattttgtt ttcgcgttat gaagggctac ctaatgtgct tattgaagca
     7081 caaatggtcg gggtgccggt gatttcaacc cctgcaggtg gatcggcaga atgctttatt
     7141 gagggtgttt cgggtttcat tcttgatgat gcacagacgg tcaatcttga ccaggcttgc
     7201 cgctatgcag aaaagttggt caatttatgg cgcagcagaa ccggtatttg ccaacagacg
     7261 cagtcatttt tacaagaacg cttcaccgtg gaacatatgg tgggaacgtt tgtaaaaacc
     7321 attgcctctc agcctcgtta attaatgggc atcatttttc agctatttca tttataaaat
     7381 aagttatgaa aaaaatcatc atattactaa cgacattttt cctgctttcg ggatgcacta
     7441 ttcccagggc ggtatttaaa tccagcctta ttaatcagga cgatcctcgt tataatctgg
     7501 tcgaagtcac gccgacatta aaactaagcg ctcccgatac tgtgccgaaa actattgtcg
     7561 atccggtttt tgccgcaaat aactggcact ggacatcttt ggctaaaggc gatgtgctgc
     7621 atatcactat tttatcctcg ggcggggctg gatatttatc caataacgcg agcggcgacc
     7681 gtgcggattt tgaaaatatt cttgtgactg acagtaatac cgttcaggtg ccttatgccg
     7741 ggacaatccc ggtttctgga ttggatgtga cgcaactggc tgatgagatc aaaaagcgac
     7801 tttcgcgcgt tgtcctgaat cctcaggtga ttgtgacact taccgcccgc accggagcca
     7861 tggtgacggt cgagggcagc gggaaaacgg gtcgataccc tctcgaacag agtatgaatc
     7921 gtctgagtca tcttttggca acggcagtgg cagtagaaaa taccagcaca gatatgatgg
     7981 aagttcacgt gacgcgccag cagcattatt tcactgcgcg actgtcagat atttatcagt
     8041 atcccggatt ggatattgcc ttacagccgg atgaccgtat cactctgcgt caagtgaccg
     8101 agtatgttaa tgtgctcggc gcagcaggtg ttcaggggaa acatgctctg gttcagcgtc
     8161 attccagcgt cgtggatgct ttggcgctcg cgaaaggatt aaatgacaat cttgccgatc
     8221 cgcaagcgat ttttctgtac aagcataacg aagcggaaca ggcgaaacag cagatgcgta
     8281 agctgaatat ctatcatgtc gat
//
LOCUS       DAJVSD010000197         8208 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.197, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000197 DAJVSD010000000
VERSION     DAJVSD010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8208
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.197"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(57..410)
                     /locus_tag="OQP62_003479"
     CDS             complement(57..410)
                     /locus_tag="OQP62_003479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722929.1"
                     /translation="MADAFILLGIVMAMVSLGFILINKLFCFISAGCLLSLCASMASL
                     QLWDASYWGRWGKVCPGLDVIISCDNYHSLYDLGWGLYGIAFLFFTALMLTCVVIILI
                     NMIMALERYCAGWRR"
     gene            complement(518..3064)
                     /gene="cyaA"
                     /locus_tag="OQP62_003480"
     CDS             complement(518..3064)
                     /gene="cyaA"
                     /locus_tag="OQP62_003480"
                     /EC_number="4.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HCS1722930.1"
                     /translation="MYLYIETLKQRLDAINQLRVDRALAAMGPAFQQVYSLLPTLLHY
                     HHPLMPGYLDGNVPSGICFYTPDETQRHYLNELELYRGMTPQDPPKGELPITGVYTMG
                     STSSVGQSCSSDLDIWVCHQSWLDGEERQLLQRKCSLLESWAASLGVEVSFFLIDENR
                     FRHNESGSLGGEDCGSTQHILLLDEFYRTAVRLAGKRILWSMVPCDEEEHYDDYVMTL
                     YAQGVLTPNEWLDLGGLSSLSAEEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYP
                     NPRLLAKDIKQRLHDGEIVSFGLDPYCMMLERVTEYLTAIEDPTRLDLVRRCFYLKVC
                     EKLSRERACVGWRREVLSQLVSEWGWDDARLTMLDNRANWKIDQVREAHNELLDAMMQ
                     SYRNLIRFARRNNLSVSASPQDIGVLTRKLYAAFEALPGKVTLVNPQISPDLSEPNLT
                     FIHVPPGRANRSGWYLYNRAPNMDSIISHQPLEYNRYLNKLVAWAWFNGLLTSRTHLF
                     IKGNGIVDLPKLQEMVADVSHHFPLRLPAPTPKALYSPCEIRHLAIIVNLEYDPTAAF
                     RNKVVHFDFRKLDVFSFGEEQNCLIGSIDLLYRNSWNEVRTLHFNGEQAMIEALKTIL
                     GKMHQDAAPPDSVEVFCYSQHLRGLIRTRVQQLVSECIELRLSSTRQETGRFKALRVS
                     GQTWGLFFERLNVSVQKLENAIEFYGAISHNKLHGLSVQVETNQVKLPSVVDGFASEG
                     IIQFFFEETGDEKGFNIYILDESNRAEVYHHCEGSKEELVRDVSRFYSSSHDRFTYGS
                     SFINFNLPQFYQIVKTDGRAQVIPFRTQPINTVPPANQDHDAPLLQQYFS"
     gene            3441..4382
                     /gene="hemC"
                     /locus_tag="OQP62_003481"
     CDS             3441..4382
                     /gene="hemC"
                     /locus_tag="OQP62_003481"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HCS1722931.1"
                     /translation="MLDNVLRIATRQSPLALWQAHYVKDALMATHPGLTVELVPMVTR
                     GDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICERE
                     DPRDAFVSNKYHSLDDLPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLGKLD
                     NGDYDAIILAVAGLKRLGLESRIRTALPPDVSLPAVGQGAVGIECRLDDARTQALLAP
                     LNHSQTALRVTAERAMNTRLEGGCQVPIGSYAEIINGEIWLRALVGAPDGSVMVRGER
                     RGSPEQAEQMGISLAEELLENGARAILTEVYNGETPA"
     gene            4379..5119
                     /gene="hemD"
                     /locus_tag="OQP62_003482"
     CDS             4379..5119
                     /gene="hemD"
                     /locus_tag="OQP62_003482"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HCS1722932.1"
                     /translation="MSILITRPSPAGEALVSRLRALGQVAWSFPLIEFVAGRELPTLA
                     DRLATLTENDLVFALSQHSVAFAHAQLQRDGRNWPASPRYFSIGRTTALALHTVSGFD
                     IRYPLDREISEALLQLPELQNIAGKRALILRGNGGRELLGETLTVRGAEVSFCECYQR
                     CAKHYDGAEEAMRWHTRGVTTLVVTSGEMLQRLWSLTPQWYREHWLLRCRLLVVSERL
                     AHLARELGWQDIKVADNADNDALLRALQ"
     gene            5141..6310
                     /gene="hemX"
                     /locus_tag="OQP62_003483"
     CDS             5141..6310
                     /gene="hemX"
                     /locus_tag="OQP62_003483"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HCS1722933.1"
                     /translation="MTEQEKSSAVVDETRETVETTPQPVNTEKKSKNGAALVLSAVAI
                     AIALAAGIGLYGWGKQQATAQTETSDALATQLTALQKAQESQKAELEGIIKKQAAQLD
                     DANRQQAALAKQLDEVQQKVATISGSDAKTWLLAQADFLVKLAGRKLWSDQDVTTAAA
                     LLKSADASLADMNDPSLITARRAITDDIASLSSVAQIDYDGIILKLNQLSNQIDNLRL
                     ADNDTDGSPMDSDSSELSSSLSEWRVNLQKSWQNFMDSFITIRRRDDTAVPLLAPNQD
                     VYLRENIRSRLLVAAQAVPRHQEETYRQALDNVSTWVRAYYDTDDAATKAFLEEVDKL
                     SQQNITMDLPETLGSQAILEKLMQTRVRNLLAQPTVSTAAPATQTDAPAAAPQGE"
     gene            6313..7509
                     /gene="hemY"
                     /locus_tag="OQP62_003484"
     CDS             6313..7509
                     /gene="hemY"
                     /locus_tag="OQP62_003484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX biogenesis protein HemY"
                     /protein_id="HCS1722934.1"
                     /translation="MLKVLLLFVLLLAGIVVGPMIAGHQGYVLIQTDNYNIETSVTGL
                     AIILIVAMVVLFAIEWLLRRLFRTGAHTRGWFASRKRRRARKQTEQALLKLAEGDYQQ
                     VEKLMSKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELAGNDTIPVEITRV
                     RLQLARNENHAARHGVDKLLEVTPRHPEVLRLAEQAYIRTSAWSSLLDIIPSMAKAHV
                     GDEAHRAMLEQQAWIGLMDQARAEQGSEGLRTWWKNQSRKTRHQVALQVAMAEHLIEC
                     DDHDMAQQIIIDGLKRQYDDRLVLPIPRLRTNNPEQLEKVLRQQIKTVGDRPLLWSTL
                     GQSLMKHGEWQEATLAFRAALKQRPDAYDYAWLADALDRLHQPEEAAAMRRDGLMLTL
                     QNNPPQ"
     gene            complement(8091..8167)
                     /locus_tag="OQP62_003485"
     tRNA            complement(8091..8167)
                     /locus_tag="OQP62_003485"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8131..8133),aa:Pro,seq:tgg)
BASE COUNT         1991 a         2241 c         2230 g         1746 t
ORIGIN      
        1 tctaaacctt gttccgctca atgggcattc ttcgaatgta ggctggataa ggcgcgttag
       61 cgccgccatc cggcacagta tcgctctaaa gccataatca tattgataag aataatgacc
      121 acacatgtga gcattaacgc ggtaaaaaac aaaaaggcga taccgtacaa tccccatccc
      181 aggtcataga gagaatggta attgtcgcag gagatgatca catccaggcc ggggcatact
      241 tttccccatc gcccccagta agacgcatcc cagagttgca aactggccat gctggcgcat
      301 agcgagagca ggcacccagc ggatataaaa cagaataact tatttataag aatgaagccg
      361 aggctgacca tcgccatgac tatccctaac aaaatgaacg catctgccac ctcaaacctc
      421 ctcctgtaaa ccaaatgcgg aggtcacggt aacgaagttg ggtgaagtta atgtgaagcg
      481 gtgaacgccg gccgggcagc gttgcccggc gcagcactta cgaaaaatac tgctgcaata
      541 gcggcgcgtc atgatcctgg tttgctggcg gcacggtgtt gataggctgc gtacggaatg
      601 ggatcacctg cgcgcggcca tcggttttca ctatctggta gaactgcggc aggttgaagt
      661 tgataaagct ggagccatac gtgaagcgat cgtgcgatga cgaatagaag cgactgacgt
      721 cgcgcaccag ttcttccttg ctaccctcgc agtggtgata cacttccgcc cggttacttt
      781 catccagaat ataaatatta aagcctttct catcgcccgt ttcttcaaag aagaactgga
      841 taatcccttc gctggcgaag ccatccacca ctgacggcaa tttcacctgg ttggtttcca
      901 cctgtaccga cagcccgtgc agcttgttat gcgaaatcgc gccgtagaat tcgatagcgt
      961 tctccagctt ctgcaccgag acattcaagc gttcgaagaa tagtccccac gtctgcccgg
     1021 aaacccgcag cgccttgaag cgaccggtct cctgacgggt gctggaaaga cgtagctcga
     1081 tacattcgga gaccagttgc tgcacgcggg tgcgaatcag accgcgaaga tgctgactgt
     1141 aacagaacac ctccacgcta tccggcggcg cggcatcctg gtgcattttc cccagaatcg
     1201 ttttcagcgc ttcgatcatc gcctgctcgc cgttaaagtg cagagtacgc acttcgttcc
     1261 acgagttgcg atataacaag tcgatactgc ctatcagaca gttttgctct tcgccaaagc
     1321 tgaaaacgtc cagcttacgg aagtcaaaat gaaccacttt attgcgaaac gccgccgtcg
     1381 ggtcatattc gaggttaacg ataatcgcca gatggcgaat ttcacagggg ctgtagagcg
     1441 ctttcggcgt tggagcaggc aagcgcagcg ggaaatggtg cgaaacatcg gcgaccatct
     1501 cctgcaactt aggcaggtcg acaataccgt tgcccttaat aaacagatgc gttcgcgacg
     1561 tcagcaggcc gttgaaccac gcccacgcga ccagcttatt aagataacgg ttatattcca
     1621 gcggctgatg gctgatgatg gaatccatgt tcggcgcgcg gttgtagaga taccagcctg
     1681 aacggttggc acgtcccggc ggcacatgga taaaggttaa attcggctcg gacagatccg
     1741 gcgatatctg cgggttcacc agcgtgactt tacccggcaa cgcttcaaac gccgcgtaca
     1801 gcttacgcgt cagtacgccg atatcctgcg ggctggcact cacgctgagg ttgttgcgcc
     1861 gcgcaaagcg aatcagatta cgatagcttt gcatcattgc gtcgagcaat tcgttgtggg
     1921 cttcgcgcac ctgatcgatt ttccagtttg cgcgattatc gagcatggtc agacgcgcgt
     1981 cgtcccatcc ccactcgctg accaactggc ttaatacttc ccgacgccag cctacgcagg
     2041 cgcgctcgcg acttaatttc tcgcacactt tcaggtaaaa gcagcggcgg actaaatcca
     2101 gccgcgtcgg atcttcaatc gccgtcaggt attcagtgac ccgttccagc atcatgcagt
     2161 agggatcgag tccaaacgat acgatttcac cgtcatgcag acgttgttta atatctttcg
     2221 ccagcagacg tgggttgggg tattcccatg aataggcttc cagcaacagc gttttcagca
     2281 ccgctttgta cggcgagtca atgctcttgt atagctgcca caggctggcg ccaaagtact
     2341 cttcggcgga gagcgagctt aagcccccca aatccagcca ttcgtttggc gttaatacgc
     2401 cctgcgcgta gagcgtcatg acatagtcgt cgtaatgctc ttcttcgtcg cacggcacca
     2461 tactccacag gatacgcttc ccggccaggc gcacagcggt acgataaaac tcatcaagca
     2521 acaggatatg ctgcgtagaa ccacagtctt ccccgcccag actgccgctt tcgttatggc
     2581 ggaaacggtt ctcgtcaatc aggaagaagc tcacctcaac gccaagcgag gcggcccagc
     2641 tttccagcag gctacactta cgttgcagca actgacgctc ttcgccgtcg agccaggact
     2701 gatggcacac ccagatatcc aggtcggacg agcagctctg cccgaccgag gaggtgctgc
     2761 ccatggtgta aacgccggta atcggcaact cgcccttcgg cggatcctgc ggcgtcatac
     2821 cgcggtacag ctcaagttcg ttcagatagt ggcgttgggt ttcatcaggc gtgtagaagc
     2881 aaataccgct gggaacgtta ccatcaaggt aacccggcat cagtggatgg tgatagtgca
     2941 ataatgtcgg cagaagactg taaacctgct gaaaagcggg tcccatggca gcaagcgcgc
     3001 gatccacacg cagttgattt atggcatcca gtctctgttt cagagtctca atatagaggt
     3061 acaagacgta tcgcctgatg ttgctacccg tcatggtgca ggtcaatact tcaccgtcgc
     3121 cattcgggat aaaccgtatg tcaaaaataa ccgttaccct ttctcgcctg catattttta
     3181 tctaataccg acgaaaaaat ggtctaaaac gtgatcaatt taacaccttg ctcattgacc
     3241 gtaaagaaag atgcgctaca tacaagtgta gcaccgttcg ctgcgtgtaa attcttaaat
     3301 acgggctggc ggtttctcgt cattattcac tgtcattgac gacactgcgc cttatcctct
     3361 cactcacggt gaccggaaaa ctaacatact ctctataagg atgttaggat ggtcaatgat
     3421 tgataatgac ggtaacaagc atgttagaca atgttttaag aattgccaca cgccaaagtc
     3481 cccttgcgct ttggcaggca cattatgtca aagacgcatt gatggcaacc catccgggac
     3541 tgacggtaga actggtgccg atggtcacac gcggcgacgt gattctcgat actcccctgg
     3601 cgaaagtggg cggtaaggga ctgtttgtta aagagcttga aatcgcgctg ctggaaaaac
     3661 gcgctgatat cgccgtgcac tctatgaaag acgttccggt ggccttcccg gacggtctcg
     3721 gtctggtgac catttgcgag cgcgaagatc cgcgcgacgc gtttgtctcg aataaatatc
     3781 acagtctgga cgatctgccc gcgggtagta tcgtcgggac gtccagtttg cgtcgtcagt
     3841 gtcaactggc ggaacgccgt ccggatctca ttatccgttc gttgcgcggc aacgtcggca
     3901 cacgtctcgg caagctggat aacggcgact atgacgccat tatcctggcc gtggccggtc
     3961 tgaaacgctt aggtctggag tcgcgcattc gcacagcctt gccgcctgac gtttcgcttc
     4021 ctgccgtagg ccagggcgct gtcgggattg agtgtcgtct tgacgacgcg cgaacacagg
     4081 cgctgctcgc accgttgaat cactcgcaaa ccgcgctgcg cgtaacggcg gaacgtgcta
     4141 tgaacacccg cctggaaggc ggttgtcagg tgccgattgg cagctatgca gaaatcatca
     4201 acggtgaaat ttggctacgc gcgctggttg gcgcgccgga cggttcggtg atggtgcgcg
     4261 gcgaacgtcg tggttctccc gagcaggcgg agcaaatggg catctcgctt gcagaggaac
     4321 tgctggaaaa cggcgcgcgc gcgattctga cggaagttta taacggcgag acgcccgcat
     4381 gagtattctg atcacccgcc cctctcccgc aggggaagcg ttagtgagcc gtctgcgcgc
     4441 actggggcag gtggcctgga gttttccact gattgaattt gtcgccggtc gggagctacc
     4501 caccctggcc gaccgcctgg caacgctgac ggaaaacgat ctggtttttg ccctttcaca
     4561 gcactccgtc gcctttgctc acgcccagct ccagcgggat ggacgaaact ggcctgcgtc
     4621 gccgcgctat ttctcgattg gccgcactac ggcgctcgcc cttcataccg ttagcgggtt
     4681 cgatattcgt tatccattgg atcgggaaat cagcgaagcc ttgctacaat tacctgaatt
     4741 acaaaatatt gcgggcaaac gcgcgctgat tttgcgtggc aatggcggcc gcgaactgct
     4801 gggcgaaacc ctgacagttc gcggagccga agtcagtttt tgtgaatgtt atcaacgatg
     4861 tgcgaaacat tacgatggcg cggaagaagc gatgcgctgg catactcgcg gcgtaacaac
     4921 gcttgttgtt accagcggcg agatgttgca acgactctgg tcgctgactc cccagtggta
     4981 tcgtgagcac tggttactac gctgtcggct attggtcgtc agtgagcgtc tggcgcacct
     5041 cgcccgggaa ctgggctggc aagatattaa ggtcgctgat aacgccgaca acgatgcgct
     5101 gttgcgcgca ttacaataac tctcataatg ggatgccata atgacggaac aagaaaaatc
     5161 ctccgccgtg gttgatgaga ccagggagac cgtggaaacc acgccacagc cagttaatac
     5221 cgagaaaaaa agtaagaacg gcgccgcgct ggtattaagc gcggtggcga tcgcgattgc
     5281 cctggcggca ggtattgggc tttatggctg gggaaaacag caggcaaccg cgcaaacgga
     5341 aaccagcgat gcgctggcga cgcaactgac cgccttgcaa aaggcgcagg agagccaaaa
     5401 agcggagctg gaagggatta tcaaaaaaca agcggcgcag ttagatgacg cgaatcgcca
     5461 acaggcggcg ctggcgaaac agcttgatga agtacaacaa aaagtcgcca ccatttccgg
     5521 cagcgatgct aaaacctggc tgctggcaca ggctgatttc ctggtgaaac tcgccggacg
     5581 caagctgtgg agtgatcagg acgtcactac cgccgctgcg ctgctcaaaa gcgctgacgc
     5641 cagtctggcg gatatgaatg accccagcct gattaccgca cgacgcgcga ttactgacga
     5701 tatagccagc ctgtcatccg ttgcgcagat cgactacgac ggcattattc tcaagctcaa
     5761 tcagctctct aaccaaattg ataacctgcg tctggcggat aacgataccg atggttcgcc
     5821 gatggattct gacagcagcg agctgtccag ctcgctaagc gaatggcgcg ttaacctgca
     5881 aaaaagctgg cagaacttta tggacagctt tattaccatt cgccgccgcg atgataccgc
     5941 cgtaccgctg ttggcgccca accaggacgt ctatttacgc gaaaatattc gctcccgcct
     6001 gttagtcgcc gcgcaggccg tgccacgcca tcaggaagaa acataccgtc aggcgctgga
     6061 taacgtttcg acctgggttc gcgcttatta cgatactgac gacgccgcga caaaagcctt
     6121 cctggaggag gtcgataaat taagccagca aaatatcacg atggatctgc cggaaactct
     6181 gggaagccag gcgattcttg aaaaactgat gcaaacccgc gtgcgtaatc tgctggcgca
     6241 accgacagtc tctacggcag cgcctgccac gcagacagac gctccggcag ccgcgccgca
     6301 aggagaataa tgatgctaaa agtattattg ctctttgtgt tgttgctcgc gggtatcgtg
     6361 gtcggcccga tgatagccgg tcaccagggc tatgtgttaa tccagaccga taactacaac
     6421 attgaaacca gcgtcaccgg cctggcgatc attctcatcg tcgctatggt ggtgctattc
     6481 gccattgagt ggttactacg ccgtctgttt cgtaccggcg cgcacacccg cggttggttt
     6541 gccagccgta aacgccgtcg cgcccgcaag cagaccgaac aggcgctgct gaagctggcg
     6601 gagggcgact atcagcaggt tgaaaagctg atgtcaaaaa atgccgacca tgctgaacaa
     6661 ccggtggtaa attatttgct ggcggcagaa gcggcgcagc agcgcggcga tgaagcacgc
     6721 gctaatcagc accttgaacg tgcggcagag ctggcgggga acgacaccat cccggtcgag
     6781 atcacgcgtg tgcgcttaca gctggcgcgc aatgaaaatc acgcagcgcg tcacggcgtg
     6841 gacaaactgc tggaggtcac gccgcgtcac ccggaagttc tgcgtctggc ggagcaggcc
     6901 tatattcgca ccagcgcatg gagttcttta ctggatatca tcccatccat ggcgaaagcg
     6961 cacgtcggcg atgaagcgca tcgcgccatg ctcgaacaac aggcgtggat aggactcatg
     7021 gatcaggcgc gtgccgagca gggcagcgaa ggattacgca cctggtggaa aaaccaaagc
     7081 cgtaaaaccc gccatcaggt ggcgctgcag gtcgcgatgg ccgagcatct aatcgagtgt
     7141 gacgatcatg atatggcgca gcagattatc atcgacggtc tgaaacgcca gtatgacgat
     7201 cggctggtgc tgcccattcc tcgcctcaga accaataatc cggaacaact ggagaaagtg
     7261 ctgcgccagc aaatcaagac ggtaggcgat cgcccgctgt tatggagcac gctcggccag
     7321 tcgctaatga aacacggtga atggcaggag gcgaccctgg ctttccgcgc cgcgctgaaa
     7381 caacgcccgg acgcgtatga ttatgcctgg cttgccgatg cgcttgatcg actgcatcaa
     7441 ccggaagagg ccgccgccat gcggcgcgac ggcttgatgc tgacattaca gaacaatccc
     7501 ccgcagtaat tccctcttgc ccggtggcgc ttcgcttacc gggcttaccg cctacacaaa
     7561 atcattcggg atgcataaaa aaacgcctgc ccggttaagg ggcaggcgtc aaaacaggtc
     7621 tgtatgacaa cataaagggg tgcttcactc aacgttgtgt ccagggtgtt tgatgaggcg
     7681 taagcgacat ctgtcagtgg acgataagca ccgtaaacgg ctctgcatca ttcctgagtt
     7741 tatgaggcca gaaggcgaac ataagagatg gaatgagcat ctacccgtac attattgcac
     7801 ataacgtgcc atctttgcac cgctaaaaaa caggcgcagg cattaaaaaa acgtagagaa
     7861 ttcacgcgat tgttatcccc ccgccgctgg cgaggtttta gcgtgtcgcc cggcggagac
     7921 agaacaggat gctttttata aagtgattat aaatcaatag attattcgtc accgaatagc
     7981 gacaaatgaa gtctgggata tcgccaataa accataatgg caacacgtgc gggataaggg
     8041 gttgaaaatg aacagaaaac aaaaaacccc gccgaagcgg ggctcaaaat tggtcggcga
     8101 gagaggattc gaacctccga cccactggtc ccaaaccagt tgcgctacca agctgcgcta
     8161 ctcgccgata tactgctttt ttgaattttt agttcaattc attgagtc
//
LOCUS       DAJVSD010000198         8194 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.198, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000198 DAJVSD010000000
VERSION     DAJVSD010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8194
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.198"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            12..1196
                     /gene="ompS1"
                     /locus_tag="OQP62_003486"
     CDS             12..1196
                     /gene="ompS1"
                     /locus_tag="OQP62_003486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpS1"
                     /protein_id="HCS1722935.1"
                     /translation="MNRKVLALLVPALLVAGAANAAEIYNKNGNKLDLYGKVDGLRYF
                     SDNAGDDGDQSYARIGFKGETQINDMLTGYGQWEYNIKVNTTEGEGANSWTRLGFAGL
                     KFGEYGSFDYGRNYGVIYDIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFF
                     GLVEGLNFALQYQGNNENGGAGAGEGTGNGGNRKLARENGDGFGMSTSYDFDFGLSLG
                     AAYSSSDRSDNQVARGYGDGMNERNNYAGGETAEAWTIGAKYDAYNVYLAAMYAETRN
                     MTYYGGGNGEGNGSIANKTQNFEVVAQYQFDFGLRPSIAYLQSKGKDLGGQEVHRGNW
                     RYTDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDDFYANNGIATDDIVGVGLVY
                     QF"
     gene            complement(1457..1645)
                     /locus_tag="OQP62_003487"
     CDS             complement(1457..1645)
                     /locus_tag="OQP62_003487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HCS1722936.1"
                     /translation="MTNKIHFRCPCCHGSQYRTSTFDVTEQNPFGAKCIFCKSTMITF
                     DNVGLYIRSGQVPLDFRK"
     gene            complement(1656..1868)
                     /locus_tag="OQP62_003488"
     CDS             complement(1656..1868)
                     /locus_tag="OQP62_003488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HCS1722937.1"
                     /translation="MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRT
                     LNENQEVEFSAEQGPKGPSAVNVVAL"
     gene            complement(2314..3582)
                     /locus_tag="OQP62_003489"
     CDS             complement(2314..3582)
                     /locus_tag="OQP62_003489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HCS1722938.1"
                     /translation="MFALCDVNSFYASCETVFRPDLCGRPVVVLSNNDGCVIACSAEA
                     KQLGIAAGEPYFKQKERFRRSGVVCFSSNYELYADMSNQVMTTLEEMVPRVEIYSIDE
                     AFCDLTGVRNCRDLTDFGHEIRATVLKRTHLTVGVGIAQTKTLAKLANHAAKKWQRQT
                     DGVVDLSNIDRQRRLLALIPVEDVWGVGRRISKKLNALGIKTALDLSEQSTWIIRKHF
                     NVVLERTVRELRGEPCLELEEFAPAKQEIVCSRSFGERVTDYEEMRQAVYSYAARAAE
                     KLRGEHQYCCFISTFVKTSPFALNEPYYGNSAAVTLLTPTQDSRDIINAAVKCLDKIW
                     RDGHRYQKAGVMLGGFFSQGVAQLNLFDDNAPRAGSAKLMEVLDHLNAKDGKGTLYFA
                     GQGMSQQWAMKREMLSPRYTTRYSDLLRVK"
     gene            complement(3585..4004)
                     /locus_tag="OQP62_003490"
     CDS             complement(3585..4004)
                     /locus_tag="OQP62_003490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HCS1722939.1"
                     /translation="MEFFRPTELREIIPLPFFSYLVPCGFPSPAADYIEQRIDLNELL
                     VSHPSSTYFVKATGDSMIEAGISDGDLLVVDSSRNADHGDIVIAAIEGEFTVKRLQLR
                     PTVQLIPMNGAYRPIPVGSEDTLDIFGVVTFIIKAVS"
     gene            complement(4131..4292)
                     /locus_tag="OQP62_003491"
     CDS             complement(4131..4292)
                     /locus_tag="OQP62_003491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001532308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722940.1"
                     /translation="MGAGQKINCCQGNALARGDNLRCGTVDAVQKIWPPDWLKYAHMT
                     IQPENLQNA"
     gene            complement(4595..4684)
                     /locus_tag="OQP62_003492"
     tRNA            complement(4595..4684)
                     /locus_tag="OQP62_003492"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4648..4650),aa:Ser,seq:cga)
     gene            4773..5570
                     /gene="mtfA"
                     /locus_tag="OQP62_003493"
     CDS             4773..5570
                     /gene="mtfA"
                     /locus_tag="OQP62_003493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DgsA anti-repressor MtfA"
                     /protein_id="HCS1722941.1"
                     /translation="MIKWPWKAQEITQNEDWPWDDALAIPLLVNLTAQEQARLIALAE
                     RFLQQKRLVALQGFELDSLKSARIALIFCLPILELGIEWLDGFHEVLIYPAPFVVDDE
                     WEDDIGLVHSQRVVQSGQSWQQGPIILNWLDTQDSFDASGFNLIIHEVAHKLDMRNGD
                     RASGIPFIPLRDVAGWEHDLHAAMNNIQDEIDLVGESAASIDAYAATDPAECFAVLSE
                     YFFSAPELFAPRFPALWQRFCQFYRQDPSQRLRVSAAEGDYGEESEH"
     gene            5671..5746
                     /locus_tag="OQP62_003494"
     tRNA            5671..5746
                     /locus_tag="OQP62_003494"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5704..5706,aa:Asn,seq:gtt)
     gene            6294..6369
                     /locus_tag="OQP62_003495"
     tRNA            6294..6369
                     /locus_tag="OQP62_003495"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6327..6329,aa:Asn,seq:gtt)
     gene            6550..7824
                     /locus_tag="OQP62_003496"
     CDS             6550..7824
                     /locus_tag="OQP62_003496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001751368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HCS1722942.1"
                     /translation="MSLTDIKAKNAKPLEKEYKLTDGFGMFLRVTPKGSKYWQMAYRF
                     EGKQKLFSIGVYPAVSLSDARQRRDEARRLLAQGIDPNAKKQAEVKELKAKRDNTRSF
                     RTVAKAWFSTKTKWSDDYGDAVWKRLETYVFPVIGDKDVAELDTGDLLVPVKKVEALG
                     YLEVAMRIQQYITAILRHAVQQKLIRHNPAYDMEGAVQKPQTEHRPALELEEIPQLLN
                     KIAEYKGRRLTILAIQLNLMIFIRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHS
                     TRGAKMKRKHLVPLCKQAMKILKEIRQLTYEEGHDDGLIFTGCYDSFKPMSENTINKA
                     LRNMGYDTKQDICGHGFRTLACSALIESGLWSEDAVELQMSHKESNSVRAAYTHKAKH
                     LDQRRLMLQWWADFLDANSNDMVRPFEFDSNK"
     gene            complement(7871..>8194)
                     /locus_tag="OQP62_003497"
     CDS             complement(7871..>8194)
                     /locus_tag="OQP62_003497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020803150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpnT protein"
                     /protein_id="HCS1722943.1"
                     /translation="LRGSFVRTLSSELYRHGYACSATLLRRVLAEDSISRSQSKYYTY
                     AASDMKKSIDYSKDIAWTEKIPSTEEYLKSLFIEHKRKYALWEIMLEKIAGLAIEKDS
                     VSYSA"
BASE COUNT         2148 a         1973 c         1930 g         2143 t
ORIGIN      
        1 gggaatacat aatgaacaga aaagttctgg cactgcttgt cccggcgtta ttagtggcag
       61 gcgcagcaaa tgcggctgaa atttataata aaaatggcaa caaactcgac ctgtacggca
      121 aagttgatgg tctgcgttac ttctctgaca atgcaggcga cgatggcgat cagtcctacg
      181 cccgtattgg ctttaaaggc gaaacgcaga tcaacgatat gctgaccggc tatggtcagt
      241 gggaatacaa cattaaggtg aacaccaccg aaggcgaagg tgcaaactcc tggactcgtc
      301 tgggctttgc cggtctgaaa ttcggcgagt acggctcttt cgattatggc cgtaactatg
      361 gtgttatcta cgacattgaa gcctggaccg atgcgctgcc ggaattcggc ggtgatactt
      421 atacccagac cgatgtctat atgctgggca gaaccaacgg cgttgccacc taccgtaata
      481 ccgacttctt cggtctggtg gaaggcctga acttcgcgtt gcagtaccag ggtaataatg
      541 aaaacggcgg tgctggtgct ggtgaaggta caggtaacgg cggcaaccgc aaactggccc
      601 gtgaaaacgg cgacggtttc ggtatgtcta cctcctacga ctttgacttc gggttaagcc
      661 tgggtgcggc ctactcttcc tctgaccgtt cggacaatca ggttgctcgt ggttatggcg
      721 acggcatgaa tgagcgcaac aactatgccg gcggtgaaac cgctgaagcc tggaccatag
      781 gtgccaaata tgacgcctac aatgtttacc tggcggccat gtacgctgaa acccgcaaca
      841 tgacctatta tggcggcggc aatggcgaag gtaatggcag tattgctaac aaaacccaga
      901 actttgaagt ggttgcgcag taccagttcg atttcggtct gcgtccgtcc atcgcctact
      961 tgcagtctaa gggcaaagat ttaggcggtc aggaagtcca tcgtggcaac tggcgttaca
     1021 ccgacaaaga tctggttaaa tatgttgacg tcggtatgac ttactacttc aacaaaaata
     1081 tgtccaccta cgttgattat aaaatcaacc tgctggacga agatgatgac ttctacgcaa
     1141 acaacggtat tgcaaccgat gatatcgtag gtgttggtct ggtctaccag ttctaagacg
     1201 ctttatgtta ttcaagcccg tgcttagcgc gggcttgtta ttatagggca agaattaaat
     1261 aacggataac ggcgcaaaga caggtgacca ggcttcatcg gatagatgaa gacaacgtcg
     1321 ctcttttcag gcgctgtctg caagagaaat aacacctttg gggaaaggta aatgccacta
     1381 tagatgatgg atgtcagcgt ctatagatga taatcatccg ggcataaaaa aagctcctgt
     1441 acggagctaa tatgaattat tttctaaaat ctagcggaac ctgtcctgag cgaatgtata
     1501 atccaacatt atcaaaagtg atcatggttg acttacaaaa aatacatttc gcgccaaacg
     1561 ggttttgctc agtaacatcg aatgtcgatg ttctgtattg tgaaccatgg caacatggac
     1621 accggaagtg aattttatta gtaatatcag ttgccttaaa gcgccacaac gttgaccgct
     1681 gatggacctt ttggtccctg ctctgctgaa aactccactt cctgattttc attcagagtg
     1741 cggaattcat tactttgaat ggcggaaaaa tgcacaaaca catctttgct gccatcttta
     1801 ggcgtaatga aaccaaagcc cttttcaggg ttaaaccatt ttactaaacc agtgattttc
     1861 gtcgtcataa tattgttacc ttttgaatga gcccttgggc gaaatggcct gaagaaaatt
     1921 atcagagaga aaaaaaccta aaggagatct caagaggaac aaatgatgag aaatattaca
     1981 atcactactt cagataagtt tgtatcaaac cgcacaacca ttaacgcatg gttaactgaa
     2041 catagcaagc tttagttttg ttaaaaaaat attaattgtt ttttagcatt atcacgctga
     2101 ttgccatact ctttttatcc atgcccatcg ctacggctga aaccaggcgt aaataagtta
     2161 cgtctcacaa cgcctgcctg gcaataaacg cgccacattt cctgatgtcg taaaccagga
     2221 tacatgcgca ttatcgtgag aggttcctgt gatcttgtgc gaccaaaaga acggggacga
     2281 tttagcaact atctcaggca ttgatcgcac aagttactta acacgcagta gatcagagta
     2341 tcttgtggtg taccgaggcg aaagcatttc tcgcttcata gcccactgtt gcgacatccc
     2401 ctgcccggcg aagtacagcg tccccttccc gtcttttgcg ttaagatggt ccagtacttc
     2461 catcaacttc gcactaccgg cgcgcggcgc gttatcgtcg aaaaggttga gttgcgctac
     2521 gccctggctg aagaagccac ccagcatcac ccccgctttc tggtagcgat ggccgtcgcg
     2581 ccagatttta tccagacatt tcacagccgc attgataatg tcacgtgaat cctgcgtggg
     2641 ggtgagaagc gtcaccgcgg cgctgttacc gtagtagggc tcgttcaggg caaagggtga
     2701 tgttttgacg aatgttgaaa tgaaacagca gtactggtgc tcgccgcgga gtttttctgc
     2761 cgcgcgcgca gcgtagctgt aaacagcctg gcgcatttcc tcatagtctg tgacccgctc
     2821 gccgaaagag cggctacaaa cgatttcctg ctttgccggc gcaaactctt caagctccag
     2881 acatggctct ccgcgaagct ctctcacggt acgctccagc acgacattga agtgtttcct
     2941 gatgatccag gtactttgtt cagagagatc gagagcagtc ttgatgccca gggcattgag
     3001 cttcttactg atgcgtctgc cgacacccca gacatcctct acgggtatca gggccagcag
     3061 ccgacgctgg cgatcgatgt tcgacaggtc aaccaccccg tcggtctggc gctgccactt
     3121 tttcgcagca tggttagcca gcttggcaag ggttttcgtc tgggcaatgc ctacaccgac
     3181 agtcaggtgc gtgcgcttca ggaccgtcgc tcttatctcg tgcccgaaat ctgtcagatc
     3241 ccggcagttt cgtacccccg tcagatcaca aaaagcctca tcaatgctgt aaatttctac
     3301 ccgcggcacc atctcctcta gtgtggtcat tacctggttc gacatatcag cgtaaagctc
     3361 gtaattactg ctgaagcaaa caacaccgga tcgccggaag cgttctttct gtttgaagta
     3421 tggctcacct gctgcgatac cgagttgttt cgcctcggcg ctacacgcga taacgcagcc
     3481 atcattgttt gataacacca ccaccggtcg gccacataaa tcaggacgaa agaccgtttc
     3541 gcaggaggcg taaaagctat taacatcgca gagcgcgaac ataatcaact gaccgcttta
     3601 atgataaagg tcaccacccc gaatatgtcg agcgtgtctt cactgccgac aggtatgggt
     3661 cgataggcgc cgttcatggg gattaactgc actgtcggac gcaactgcaa ccgctttacg
     3721 gtgaactctc cttcaattgc cgcaattaca atgtcaccgt ggtcagcgtt ccgtgagcta
     3781 tccaccacca gcaggtcacc gtcgctgatg cctgcttcaa tcattgaatc ccccgttgct
     3841 ttgacaaaat atgttgagct gggatgagaa acgagcaact cattaagatc gatacgctgc
     3901 tcaatatagt ccgccgcggg gctggggaat ccacacggca ctaagtaact gaaaaatggg
     3961 agaggaataa tttcgcgcaa ctctgtaggt ctgaaaaatt ccataatcca tacctcgaat
     4021 actgttttta tatacagtag tgttatttga acatgcgcgc aagataccgg agtcgctacg
     4081 actgtttaaa tcttcgtcgc ttcgtttgta agtttctctc tcagttcaaa ttatgcgttt
     4141 tgtaaatttt ccggttgtat tgtcatgtgt gcatatttaa gccagtctgg aggccagatt
     4201 ttctgtacag cgtcgacagt cccgcagcgt aagttatcgc cacgcgccag cgcgtttccc
     4261 tgacagcaat taatcttctg cccggcgccc atgtctacag gggaacattt cgggcaacag
     4321 gccgggtgcg acgattaccg aggacgacgg cgttaagtcg ccgcaagtga catcactgtg
     4381 aatcccgatg gggtacagcg aaatagcggg gcagaaaacc aggagttgac ttatgatcga
     4441 aaagtaaaaa taacaccatc cctggccccc tcttctggca gaaaaagcat aagatggcga
     4501 tacgtttttc acgtaatatt ctaacagaat actctaagtg tattctaagt gtgagactga
     4561 tcgctgaaag aagatgagct aagtgtttga attgtggcgg agagaggggg atttgaaccc
     4621 ccggtagagt tgcccctact ccggttttcg agaccggtcc gttcagccgc tccggcatct
     4681 ctccgtatat tgcaatgatg ccaggtaatt tggcatttta acagacccta ttcgggtaat
     4741 tttgttcaag tgacgagttt acgagcaaaa cgatgattaa gtggccctgg aaagcacaag
     4801 aaataaccca gaacgaagac tggccgtggg atgatgcgct ggctatacct cttctggtaa
     4861 acctcaccgc gcaagaacag gctcggctta ttgcgctagc cgaacgtttt ttgcagcaga
     4921 aaagactggt agcgctacag ggatttgagc tcgactcgtt aaaaagtgca cgtattgcgt
     4981 taattttttg cttaccgatc ctggagctcg gtattgagtg gcttgatggt tttcatgaag
     5041 tgctcattta tcccgcgccc tttgtggtag atgatgaatg ggaagatgac ataggtctgg
     5101 tgcacagcca gcgtgtcgta cagtcggggc aaagctggca acaagggccc atcattctga
     5161 actggctgga tacccaggac tcgttcgatg cttcgggttt caacctcatt attcatgaag
     5221 ttgcgcacaa actggatatg cgtaatggcg atcgcgccag cggcatccct ttcatcccgt
     5281 tacgcgatgt ggctggctgg gaacacgatc tccacgcggc aatgaataat attcaggatg
     5341 aaatcgatct tgttggcgaa agcgctgcca gtatagatgc ctatgccgcc accgaccctg
     5401 cagaatgttt tgccgtgttg tcagagtatt ttttcagcgc gccagaactg tttgctccac
     5461 gtttcccggc gctatggcag cgtttttgcc agttctatcg ccaggatcct tctcagcgct
     5521 tacgggtaag cgctgccgaa ggcgactacg gcgaggaatc cgaacattaa ttcctcactt
     5581 tgtgggttaa ttaaccaatt gaattggcgc gttaatttta ctgttgacac gttatagccg
     5641 gcccagtatt caacgcctcg ttgaaacaat tcctctgtag ttcagtcggt agaacggcgg
     5701 actgttaatc cgtatgtcac tggttcgagt ccagtcagag gagccagatt taggaaagca
     5761 gacgttcact gacgtctgct ttctgcattt atatcaactg attatcccct tcttcaagtt
     5821 tactctcgtt tactaaaaac cactcgaagc catacccttt tgctggtaaa gctggtttgc
     5881 cataattctg cctgtgatat tgacggaaat cttttcgcct gcaccagaaa tttatctgcc
     5941 atttccgcta ccggcgtcag actgcctgta tcaaccattt tcacaaaata tttcacgtct
     6001 aaagttcatt ctgccccctg cccttaatct ctacggcgtt atgtctcaga attatttgcc
     6061 aagtgcctgc caatttttca cgcctcatca ggcgctggta catagccatt gcggtaaggt
     6121 cacagcattt gacttgtgca atgacagaca aagttgcgcc atgccggggc aaagtaggaa
     6181 ttagatcaaa acttcaacgc tttgttgttt ttgtcagcaa acaaacgcgc aatcttattt
     6241 ccccctttga caagccgatc gcacatcgtt actatgcgcc ccgttcacac gattcctctg
     6301 tagttcagtc ggtagaacgg cggactgtta atccgtatgt cactggttcg agtccagtca
     6361 gaggagccat tttcaagaaa gcagacgttc actaacgtct gctttctgca tttctatcaa
     6421 ttggttatcc cctctcagtc gttcaccctc gttcactaaa aaccactcga agccatatca
     6481 ttttgatggt aaaaatgctg gtaatgctgg ttcgatttcc cttttaccaa caaatgaggg
     6541 ggtgttttca tgtcactgac tgatattaaa gcaaaaaatg caaaacccct tgagaaggaa
     6601 tacaagctta ctgatggctt tggtatgttc cttcgtgtta cccctaaagg ttcgaaatac
     6661 tggcaaatgg cttaccgctt cgaagggaaa caaaaactct tctctattgg tgtttaccct
     6721 gctgtttctc tttctgacgc aagacagcgc cgtgatgagg ccagaaggct tcttgctcag
     6781 ggtattgacc ctaatgcaaa gaaacaggca gaggttaaag agcttaaagc caaacgtgat
     6841 aatacacgct ccttcagaac agtagccaaa gcgtggttct ccacgaaaac aaaatggtct
     6901 gatgattatg gtgatgccgt atggaagcgc cttgaaactt atgtcttccc ggtaatcggt
     6961 gacaaagatg ttgccgaact ggatacgggt gatctgctgg ttccggtgaa aaaagttgag
     7021 gctcttggtt atcttgaagt tgccatgcgc attcaacaat acattacggc aatcctgcgt
     7081 catgccgtcc agcaaaagct gatacgccat aacccagcct atgatatgga aggtgcagtt
     7141 cagaaaccac aaactgaaca ccgccctgca cttgagctgg aagaaatacc ccagttactg
     7201 aacaaaattg ccgaatacaa aggccgcagg ttaaccatac tggcaataca gctcaatctg
     7261 atgattttca ttcgttccag tgagctgcgt ttcgctcgct ggtcagaaat tgatttcaaa
     7321 agtaagttat gggtgatacc cgaacagcgt gaagcgattg aaaacgtcaa acattcaact
     7381 cgtggggcta aaatgaagcg taagcactta gttccccttt gtaagcaggc catgaagata
     7441 ctcaaagaga tccgacaact gacttatgaa gaaggtcatg atgacggatt aatctttact
     7501 ggttgttatg actcgtttaa acccatgagc gaaaacacca tcaacaaagc gcttcgcaat
     7561 atgggctatg acacaaagca ggacatctgt ggacacggtt tccgcactct ggcctgtagt
     7621 gccttaattg agtccgggct atggtcagaa gacgctgtag agcttcaaat gagccataag
     7681 gaaagcaata gcgtccgtgc tgcttatacc cacaaggcaa aacaccttga ccagcgccgc
     7741 ctgatgctcc agtggtgggc tgatttcctt gatgctaaca gcaacgatat ggtcaggccg
     7801 tttgagtttg attcaaataa ataaagggaa aggccgttcg cggcctttca acttcatgct
     7861 taattacagt ctatgctgaa tatgatactg aatctttctc tatcgctaaa ccagcgattt
     7921 tttccagcat tatttcccag agtgcgtatt ttcttttgtg ctcaataaac agagatttta
     7981 aatactcttc tgttgaaggg attttttcag tccatgcaat atctttactg taatcaatgc
     8041 tttttttcat atcagatgcc gcataggtgt agtatttact ctgagaacga ctgatactgt
     8101 cctctgccag cactctacgg agcagagttg cagaacatgc ataaccatgc ctgtaaagct
     8161 cactcgataa ggtacgaaca aaagaaccgc gtaa
//
LOCUS       DAJVSD010000199         8052 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.199, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000199 DAJVSD010000000
VERSION     DAJVSD010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8052
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.199"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            13..594
                     /gene="pmrG"
                     /locus_tag="OQP62_003498"
     CDS             13..594
                     /gene="pmrG"
                     /locus_tag="OQP62_003498"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004985078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptose(II)-phosphate
                     phosphatase"
                     /protein_id="HCS1722944.1"
                     /translation="MKNKRYFAILAGALVIIAGLASQHAWSGNGLPQINGKALAALAK
                     QHPVVVLFRHAERCDRSDNTCLSDSTGITVNGAQDARALGKAFSADIQNYNLYSSNTV
                     RTIQSATWFSAGRSLTADKKMMDCGSGIYASINTLLKKSQNKNIVIFTHNHCLTYIAK
                     NKRGVKFDPDYLNALVMYAENGKLFLDGEFVPG"
     gene            complement(639..1064)
                     /gene="nudI"
                     /locus_tag="OQP62_003499"
     CDS             complement(639..1064)
                     /gene="nudI"
                     /locus_tag="OQP62_003499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphatase NudI"
                     /protein_id="HCS1722945.1"
                     /translation="MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGE
                     RIEEALRREIREELGEQLILSDITPWTFRDDIRVKTYADGRQEEIYMIYLIFDCVSAN
                     RDICINDEFQDYAWVKPEELALYDLNVATRHTLALKGLL"
     gene            1343..1885
                     /locus_tag="OQP62_003500"
     CDS             1343..1885
                     /locus_tag="OQP62_003500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1722946.1"
                     /translation="MKKSILLGFAGMLFVSASAQAISISGQAGEDYTNIGVGFGTEST
                     GLALSGNWMHNDDDGDAAGVGLGLNIPVGPLLATVGGKGIYTNPKDSDEGYAAAVGGG
                     LQWKIGNSFRLFGEYYYSPDSLSSGIESYEEANAGARFTIMRPLSIEAGYRYLNLAGK
                     DGNRDNAIADGPYVGVNASF"
     gene            2000..3196
                     /locus_tag="OQP62_003501"
     CDS             2000..3196
                     /locus_tag="OQP62_003501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide mononucleotide deamidase-related
                     protein YfaY"
                     /protein_id="HCS1722947.1"
                     /translation="MLNVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGVPLSRRNTVG
                     DNLDSLVAILRERSQHADVLIVNGGLGPTSDDLSALAAATAKGEGLVLHQAWLTEMER
                     YFQQRGRVMAPSNRKQAELPASAEFINNPVGTACGFALQLNRCLMFFTPGVPSEFKVM
                     VEKEILPRLRARFSLPEPPLCLRLTTFGRSESDLAQRLDSLPLPPGVTMGYRSSMPII
                     ELKLTGPATQREAMLALWPEVKRVAGQNLIFEGTENLPAQIARRLQERQLSLTLSEQY
                     TSGLLALQLSRAGAPVLASEVVPSQEETLAQTAHWTTERRSNHYAGLALAVSGLENEH
                     LNFALATPDGTYALRVRFSANRYSLAIRQEVCAMMALNMLRRWLNGEDITSEHGWIDV
                     VESLTS"
     gene            3446..4228
                     /locus_tag="OQP62_003502"
     CDS             3446..4228
                     /locus_tag="OQP62_003502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HCS1722948.1"
                     /translation="MLESSKVPALTRAIDILNLIARIGPCSAAIIIETLRIPKSTAYL
                     LLNELKRQRFISLDHQENYCLWTKLVELSGHALSKMDLRELARPRLTQLMDEIGLLCH
                     LGIIDHENAYYILKVESSSTISVRSHEGKSLSLYRSGIGKCLLAWQPAAVRKAIIEKM
                     VWERATLTTITEPQQLNDELERIRQRGWSFDNGEDYPDVRCVAAPVFNARNELTAAIS
                     LVGTRLQINEENLDYLAGKAIACAKDISRLLGWKSPFDSLAS"
     gene            4242..5447
                     /gene="rhmD"
                     /locus_tag="OQP62_003503"
     CDS             4242..5447
                     /gene="rhmD"
                     /locus_tag="OQP62_003503"
                     /EC_number="4.2.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416750.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnonate dehydratase"
                     /protein_id="HCS1722949.1"
                     /translation="MTLPKIKHVRAWFIGGATAEKGAGGGDYHDQGGNHWIDDHIATP
                     MSKYRDYEQSRQSFGINVLGTLIVEVEAENGQTGFAVSTAGEMGCFIVEKHLNRFIEG
                     KCVSDIKLIHDQMLGATMYYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLGGAV
                     RDEIQFYATGARPDLAKEMGFIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGPDFW
                     LMLDCWMSQDVNYATKLAHACAPFNLKWIEECLPPQQYEGYRELKRNAPAGMMVTSGE
                     HHGTLQSFRTLAETGIDIMQPDVGWCGGLTTLVEIAALAKSRGQLVVPHGSSVYSHHA
                     VITFTNTPFSEFLMTSPDCSTLRPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRD
                     CHLKRPYSH"
     gene            5503..6792
                     /locus_tag="OQP62_003504"
     CDS             5503..6792
                     /locus_tag="OQP62_003504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1722950.1"
                     /translation="MSITLLDGVVKKNRARLIPFMLALYVLAFLDRSNIGFAKETYQI
                     DTGLSNEAYALGAGIFFVVYAFLGVPANLLMRKFGARTWIGTTTLLWGFLSAAMAWAD
                     SEAKFLIIRTLLGAAEAGFFPGMIYLTSQWFPQRNRASIMGLFYMGAPLALTLGSPLS
                     GALLEMHGFMGHPGWFWMFVIEGLLAIGAGIFTFFWLDDTPQQARFLSLEEKNALIRQ
                     LASEEEKKVTSRLADALRNGRVWQLAIIYLTIQVAVYGLIFFLPTQVAALLGTKVGFT
                     ASVVTAVPWVAALLGTWLIPRYSDRTGDRRNVAAVTLLAAGIGIGLSGLVSPVLAILA
                     LCVAAVGFIAVQPVFWTMPTQLLSGTALAAGIGFVNLFGAVGGFIAPILRVKAETLFA
                     SDAAGLLTLAGVAIIGSLIIFTLSVNRPVAQSGAAHH"
     gene            6818..7621
                     /gene="yfaU"
                     /locus_tag="OQP62_003505"
     CDS             6818..7621
                     /gene="yfaU"
                     /locus_tag="OQP62_003505"
                     /EC_number="4.1.2.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxy-L-rhamnonate aldolase"
                     /protein_id="HCS1722951.1"
                     /translation="MNALLSNPFKEGLRKRDTQIGLWLSSTTSYMAEIAATSGYDWLL
                     IDGEHAPNTVQDLYHQLQAIAPYASQPVIRPIEGSKALIKQVLDIGAQTLLIPMVDTA
                     EQARQVVSATRYPPLGQRGVGASVARAARWGRIDNYMAQANESLCLLVQVESKVALEN
                     LDAILEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIESCIYRIRAAGKAAGFLAV
                     DPAMAQKCLAWGANFVAVGVDTMLYTEALDSRLAMFKSVQSVSTAKRSY"
     gene            7627..7803
                     /locus_tag="OQP62_003506"
     CDS             7627..7803
                     /locus_tag="OQP62_003506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HCS1722952.1"
                     /translation="MPDGTYALRVRFSANRYSLAIRQEVCAMMALNMLRRWLNGEDIT
                     SEHGWIDVVESLTA"
     gene            complement(7890..>8052)
                     /locus_tag="OQP62_003507"
     CDS             complement(7890..>8052)
                     /locus_tag="OQP62_003507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001017745.1"
                     /note="similar to ElaD; specific cysteine protease which
                     targets ubiquitin and ubiquitin-like proteins covalently
                     bound to target proteins; SseL in Salmonella is required
                     for macrophage killing and virulence, and it is secreted
                     by the salmonella pathogenicity island 2 type III
                     secretion system; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type III secretion system effector
                     deubiquitinase SseL"
                     /protein_id="HCS1722953.1"
                     /translation="FCYHTIQLLSNAGQNDPATTLREFAENFLTLSVEEQTLFNTQTR
                     RQIYEYSLQ"
BASE COUNT         1829 a         1933 c         2246 g         2044 t
ORIGIN      
        1 accctacgct ttattaaaaa caaacgctat ttcgcgattc tggcgggggc gttggttatt
       61 atcgctgggt tggcctcaca acatgcctgg agcggtaacg gtctaccgca gattaacggt
      121 aaggcgctgg cggcgctggc gaagcagcat ccggtagtcg tgttattccg ccatgccgag
      181 cggtgcgatc gttccgataa tacctgcctg tcagacagca cggggattac ggtcaacggt
      241 gcgcaagatg ccagagcgct gggtaaagcc ttcagtgccg atatacaaaa ttacaatctc
      301 tattccagta atacggtgcg caccatccag tcggcaacct ggttttccgc aggcaggtcg
      361 cttacggcgg ataaaaaaat gatggattgc ggcagcggta tttatgcttc aatcaatacg
      421 ttactgaaaa agtcgcagaa taaaaatata gtcattttta cccataatca ttgtttgacg
      481 tatattgcaa aaaataagcg cggcgtgaag tttgatccgg actatcttaa tgcgctcgtt
      541 atgtatgcgg aaaacggaaa actcttttta gacggtgaat ttgttcccgg ctagccgcat
      601 gttaaaagcg taaagacagc ctgaagcggc tgtcgttatt ataataaccc tttcaatgct
      661 aatgtgtggc gtgtcgctac attcaaatca tacagcgcca gttcttctgg cttgacccag
      721 gcgtagtcct gaaattcgtc gttaatacat atatcgcggt tagcggaaac acagtcgaag
      781 atgagataaa tcatataaat ctcttcttgt ctgccatcag cgtacgtttt aacgcggata
      841 tcgtcgcgaa aggtccacgg cgtaatatcg ctcagaatca gttgttcgcc gagttcctcc
      901 cgaatctccc gacgcagcgc ctcttcaata cgttcgcctg gctcgacccc gccgcccgac
      961 agcgcccact gaccgggaaa gacgccgcgg ttgtcggcca ttttgcacag cagataacag
     1021 ccatcatttt gaattaatgg gcaaactata gttcgttgac gcataagtcg cttccttaaa
     1081 ccaccaggcc atcagcttaa caaatcattc tgcgaaattc tttgtgaaaa atggaagcga
     1141 taacgcagac tgcgtttttt gttaattttg ttgatgcagg cgtcgccatg tgatggcgca
     1201 atgatgcgtc acggcgaaag tagtatttcg ttacaatatg tttttggaat ggtttcttag
     1261 tgcattgatt cctcagcgtc tggcagtaca attctgccgt tttggggagt ttttctttat
     1321 gtgcttgctg gaaagggtaa aaatgaaaaa aagcatatta ttaggttttg ccggaatgct
     1381 gttcgtttct gcatcggcgc aggccatcag tattagcggc caggcgggcg aagattacac
     1441 caacattggc gtgggttttg gtacggaatc gacgggactg gcgctaagcg gcaactggat
     1501 gcacaacgat gatgatggcg acgctgcggg cgtgggtctg gggctgaaca ttccggtggg
     1561 accgctgctg gcgacggtag gcggtaaagg tatttatacc aatccgaaag acagcgatga
     1621 aggctatgcg gcggctgtcg gcggtgggtt acaatggaaa atcggcaaca gcttccgtct
     1681 gttcggcgag tattattatt caccagattc gctgtccagc ggtatcgaaa gttatgaaga
     1741 agcgaatgca ggcgcgcgtt tcaccattat gcgcccgctg agcattgaag ccggttatcg
     1801 ttacctgaac ctggcgggta aagacggcaa ccgcgacaat gcgattgctg acggccctta
     1861 tgttggcgta aacgccagtt tttgatgcta acggcgcggc aatcgtcgcg ccatattcct
     1921 ccttttcccg tcattcttct ttccacgtca tattcgtctt tgcgttatag tgttttcatc
     1981 ataaaagcag gagaacacaa tgctaaatgt ggaaatgcta tccaccgggg atgaggtgtt
     2041 gcacggacaa atcgttgaca ccaatgccgc ctggctggct gattttttct ttcatcaggg
     2101 cgttccgtta tcacggcgaa atacggtagg cgataatctg gacagtctgg tcgctatctt
     2161 gcgtgaacgc agtcaacatg ctgatgtttt gattgttaat ggcgggttag ggccgaccag
     2221 cgatgattta agcgcgctcg ccgcggcaac ggcaaaaggc gaaggattag tactgcacca
     2281 ggcgtggctg accgaaatgg aacgttactt tcagcagcgt ggtcgcgtga tggcgccgag
     2341 caaccgtaaa caggcggaac tgcctgccag cgcggagttt attaataatc cggtcggcac
     2401 tgcctgtgga tttgcgctac agctcaaccg ctgcctgatg tttttcaccc ccggcgtacc
     2461 gtcggaattt aaggttatgg tggagaagga aatcttaccg cggttacgcg cgcgtttttc
     2521 gctgccggag ccgccgcttt gcctgcggtt aacgactttt ggacgttcag aaagtgacct
     2581 cgcgcagcgt ctcgattcac tgccgttgcc gcccggcgtg acgatggggt atcgctcatc
     2641 aatgccgatc attgaactga aattgaccgg cccggcgacg caacgggagg cgatgctggc
     2701 gttatggcca gaggtcaaac gggtcgccgg acagaacctg atttttgaag gtacggaaaa
     2761 tctgccggcg caaatagccc gccgcctgca ggaaaggcag ttgagtctga cgttgagcga
     2821 gcaatacacc agcggtttac tggcgctaca gctttcccgt gccggggcgc cggttcttgc
     2881 cagcgaagtc gttccttctc aggaagagac gctggcgcaa acggcacact ggacgacaga
     2941 acggcgcagc aatcattatg ccggtctggc gctggccgtg tcggggctgg aaaacgaaca
     3001 tcttaatttc gcgctggcga cgccggatgg cacgtatgcc ttacgcgtgc gttttagcgc
     3061 caatcggtat agtctggcaa tacgtcagga ggtctgcgcg atgatggcgc taaatatgct
     3121 gcgccgttgg cttaatggcg aggacattac cagcgagcat ggctggatag acgtggttga
     3181 atcattgaca tcataatccc tttctcttat ctgcgatggg aacgacatcg tgagccggat
     3241 aaggccgcta tgccattatc cggcaatatt atctgctttt ttgtccagcc aattgtactg
     3301 aatacaaagt aatacgtgcg ttaattcaca tttatatggt taacccttcc actccgttgg
     3361 aaggcggata agctttgacg cgcttcacaa ttttttccct actgaccttt cacactgatt
     3421 ccagtgtctc agactggagt ccaatatgtt ggaatcaagt aaagtcccgg ctcttactcg
     3481 cgcaatcgac atcctcaatt tgatcgcgcg tattggccca tgcagcgcgg caatcattat
     3541 tgaaacgttg cgtattccaa aaagcaccgc gtacctgctg ttgaatgaat taaaacgtca
     3601 gcgatttatt agcctcgatc atcaggagaa ctactgcctg tggactaagc tcgttgaatt
     3661 gtcgggtcat gcgctcagca agatggatct gagggagctg gcgcgtcctc gtctaacaca
     3721 actgatggat gaaatcgggc tgctgtgtca cttggggatc atcgaccacg aaaatgcgta
     3781 ttacatactg aaagtggaat cctcatccac tatcagcgtg cgctcgcatg aggggaaaag
     3841 cctctctctt tatcgttccg gcatcggcaa atgcctgctg gcatggcagc cggccgccgt
     3901 acgcaaagcc attattgaaa aaatggtatg ggagcgagcc acgctgacca ccatcaccga
     3961 gccgcaacaa ttgaatgatg agctggaacg cattcgccag cgtggatgga gctttgataa
     4021 cggggaggat tatccggatg tccgctgcgt tgccgcaccg gtatttaatg ccagaaacga
     4081 actgaccgcg gcaatttcac tggtcggcac gcgcctgcaa atcaacgaag agaatcttga
     4141 ttatttggcc ggtaaagcta ttgcctgtgc caaagatatt tcacgcctgt tgggatggaa
     4201 aagtcccttc gactcactcg catcttaaaa tggagaatat tatgactctt cctaaaatta
     4261 aacacgttcg agcctggttt attgggggcg ctaccgcaga gaaaggggct ggcggcgggg
     4321 attatcacga ccagggagga aatcactgga ttgatgacca tatcgccact cccatgagca
     4381 aatatcgcga ctatgagcag tctcgtcagt cttttgggat caacgtgtta gggacgctga
     4441 ttgtcgaagt agaggcggaa aatgggcaga cggggttcgc cgtttcgaca gcaggggaga
     4501 tgggctgttt tatcgtagaa aaacatctta accggtttat tgaaggcaaa tgcgtaagcg
     4561 atatcaaact tattcacgat cagatgctcg gcgcgaccat gtactactcc ggttccggcg
     4621 gtctggtgat gaacacgatt tcctgtgtgg atctggcgct gtgggatctg tttggcaagg
     4681 tggttgggct gccggtttat aaattgctgg gcggagcggt acgcgatgaa attcagtttt
     4741 acgccaccgg cgcacgcccg gatctggcta aagaaatggg ctttatcggc ggtaaaatgc
     4801 cgactcactg gggaccgcac gatggtgatg cggggatccg taaagatgcc gcgatggtgg
     4861 cggatatgcg tgaaaagtgc gggccggatt tctggctgat gctcgactgc tggatgagtc
     4921 aggatgtgaa ctatgcgact aaactggctc acgcctgtgc gccatttaat ctcaaatgga
     4981 ttgaagagtg tctgccgccg cagcagtatg aaggctatcg cgaattaaaa cgcaacgcgc
     5041 ctgcagggat gatggttacc agcggcgaac accatggtac gctgcaatcc ttccgcactc
     5101 tggcagaaac cggcattgat attatgcagc cggatgttgg ctggtgcggc ggattaacca
     5161 cgctggttga gatcgccgcg cttgccaaat cgcgcgggca actggtggtg ccgcacggtt
     5221 cgtctgtcta ttcgcaccat gcagttatta ctttcactaa tacccctttc agcgagttcc
     5281 tgatgaccag cccggactgc tccaccctgc gtccgcaatt tgacccgatt ctcctggatg
     5341 agccggtgcc ggtgaatgga cgcatccata aatcagtgct ggataagccg ggcttcggcg
     5401 tcgagcttaa ccgtgactgt cacttgaaac gcccttatag ccactaataa ctcgtgcgtt
     5461 gcctttgtac ggcaacgccc tcatcctgtt gaggatattg ctatgagcat cactttactt
     5521 gacggcgtag tgaagaaaaa ccgcgcacgt ttaattcctt ttatgttggc gctgtacgta
     5581 ctggcgtttc tggatcgttc aaatattggt tttgccaaag agacctatca gatagatacc
     5641 gggctaagta atgaagccta cgcgctaggg gccggtattt tctttgtggt ttacgctttc
     5701 cttggcgtac cggctaacct gctgatgcgc aaatttggcg caagaacctg gatcggcacg
     5761 actaccctgc tgtggggctt tctctctgct gcgatggcct gggcggatag tgaagcaaaa
     5821 tttctgataa tccgcacgct attgggcgcg gcggaggctg gatttttccc cggcatgatc
     5881 tatctaactt cacaatggtt cccgcagcgt aaccgtgcca gcattatggg gctattttat
     5941 atgggcgcgc cgctggcgtt aacgttgggt tcgccgctct ccggcgctct gctggagatg
     6001 catggtttta tggggcaccc gggatggttc tggatgttcg ttatcgaagg cctactggcg
     6061 attggcgcag ggatattcac ctttttctgg cttgatgaca ctccgcagca ggcgcgtttt
     6121 cttagcctgg aagaaaagaa cgcgcttatc aggcaactgg cgagcgaaga agagaaaaag
     6181 gtcacgtcaa ggcttgcgga tgcgctgcgt aatggacgcg tctggcaact ggctattatt
     6241 tatctgacga ttcaggtggc ggtatacgga ctcatctttt tcctgccgac ccaggttgcc
     6301 gcgctattgg gcactaaagt gggctttacc gcttcggtgg taacagcggt tccctgggtg
     6361 gcggctttgc ttggcacatg gcttattcct cgctactccg accgtaccgg cgatcgccgt
     6421 aacgttgcgg cagtgacgct actggctgcg ggcattggca ttggcctgtc aggtctggtt
     6481 tctccggtgc tcgctattct ggcgctctgt gttgcagcag taggatttat tgccgttcag
     6541 cccgtattct ggaccatgcc aacgcagcta ctttccggta cggctctggc ggcaggaatt
     6601 ggtttcgtta atctgtttgg cgctgtgggc ggttttattg ccccaattct gcgcgtaaaa
     6661 gcggaaacgt tgtttgccag cgatgcggcg ggcctgctga cgctggccgg agtcgccatc
     6721 attggctcat taattatctt cacgctgagc gttaatcgtc cggtggcgca atccggcgct
     6781 gcgcatcatt aatcttatct acgttgtaag gatcgctatg aacgcattgt tatcaaatcc
     6841 ttttaaagaa ggattacgta aaagggatac gcaaattggt ttgtggctca gttcaaccac
     6901 ctcttatatg gcggagattg cggcgacgtc gggttatgac tggttgttaa tagatggcga
     6961 gcacgcgcct aatacggtgc aggacttgta tcatcagtta caggccatcg ccccatacgc
     7021 cagccagccg gtgattcgcc cgatcgaggg aagtaaagcg ctcattaaac aggtactgga
     7081 catcggggcg caaacgctac tgatcccgat ggttgacacc gcagaacagg cgcgccaggt
     7141 cgtttccgct acccgatacc cgccgttggg gcaacgaggc gttggcgcga gcgtggcgcg
     7201 tgcggcgcgc tgggggagaa tcgacaacta tatggcacag gccaatgagt cgctctgcct
     7261 gttggtgcag gttgaaagca aagtggcgct ggaaaacctt gacgcgattc tggaggttga
     7321 aggcattgat ggcgtcttta tcggtccggc agatctctct gcttcattgg gttaccccga
     7381 taatgccgga cacccggaag tgcagcgaat cattgaatcg tgtatttatc gtattcgcgc
     7441 cgccggaaaa gcggcgggtt ttttggcggt cgatccggca atggcgcaga aatgtctggc
     7501 gtggggcgcg aattttgtcg cggtcggggt agatacgatg ctctacaccg aggcgctgga
     7561 cagcaggttg gcgatgttta aatctgttca gtcagtaagc acggcaaaac gtagttattg
     7621 agaaaaatgc cggatggcac gtatgcctta cgcgtacgtt ttagcgccaa tcggtatagc
     7681 ctggcaatac gtcaggaggt ctgcgcgatg atggcgctaa atatgctgcg ccgctggctt
     7741 aatggcgagg acattaccag cgagcatggc tggatagacg tggttgaatc attgacggca
     7801 tagaactttt agtgggaagg cttggccttc ccatccttat atacttataa attcttggca
     7861 gagcatcatt tcaggataag tactcgccat tactggagac tgtattcata tatttgtcgc
     7921 cgggtttggg tgttaaatag tgtttgttcc tctactgaaa gcgttaagaa attttccgca
     7981 aattctcgta gtgtggtagc aggatcgttt tgtcctgcat tcgataagag ttgaattgta
     8041 tggtaacaaa at
//
LOCUS       DAJVSD010000200         8034 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.200, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000200 DAJVSD010000000
VERSION     DAJVSD010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8034
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.200"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            151..567
                     /locus_tag="OQP62_003508"
     CDS             151..567
                     /locus_tag="OQP62_003508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2195 family protein"
                     /protein_id="HCS1722954.1"
                     /translation="MKKYAVEVLFMSACAGMFLPVFAWGGTDVNIDNPLAECVDIHPV
                     HRQEMDNLTILKTTVTLKKSTGECGCFSALISYTSLLAQDVEGYGRGSAYSLQEGNIS
                     LAKMQGRYPFSFVLSVDNQSVRDQKLALMIRCTPPL"
     gene            594..1031
                     /locus_tag="OQP62_003509"
     CDS             594..1031
                     /locus_tag="OQP62_003509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000290976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2778 domain-containing protein"
                     /protein_id="HCS1722955.1"
                     /translation="MAVRLTFDGQKLTWPGIGIFKATTGLPDLQWPDKQCVPDAAIPE
                     GNYKLFIQFQGEAPIRNAADCDLGPSWGWSTIPRGQAAGTCEIYWANWGYNRIRLESA
                     DEKTRKACGGKRGGFYIHDSTKGYSHGCIEVEPVFFRILKQET"
     gene            1509..3698
                     /locus_tag="OQP62_003510"
     CDS             1509..3698
                     /locus_tag="OQP62_003510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tip protein VgrG"
                     /protein_id="HCS1722956.1"
                     /translation="MSFVSTNNKSGMGGLTTTTPPITGESGGVTADSVAGSVADAAEA
                     AVEQAAGSLFGALPEPSGLVKAAVAAAQAAAAAGMAQDAVSAIVSAVAGGPGAHNVTV
                     SGSAVPPGALLFASLDGGETLSELFSYVVQLKTPDTLNLGYVSPAANLPLKPMVGKDL
                     CVNIELDGGGKRHISGLVTAARVVGHEGRSVTYELRMEPWVKLLTHTSDYKAFQNKTV
                     VDILDEVLAEYPYPVEKRLVESYPVRTWQVQYGETDFDFLQRLMQEWGIYWWFEHSED
                     SHTLVLADAISAHKACPDSPLVEWHQEGLKLDKEFIHTITANESLRTGQWVLDDFDFT
                     KPRSLLANTVANPRETGHATYEHYEWPGDYFDKSEGEMLTRIRMEAQRSPGSRVLGGG
                     NIRTLMTGYTFTLENYPTAEVNQEYLLMQTLLFVQDNAQHSGQDQHFTFSTRFELHPT
                     REVFRPQRTVSKPHTKGPQSAIVTGPAGQEIWTDQYGRVKVQFGWDRYGKMDENSSCW
                     IRVSYPWAGKGFGMIQIPRIGQEVLVDFKNGDPDLPIIVGRTYNQDTMPPWGLPGMAS
                     QSGIFSHSLYGGPTNGNMLRFDDKTGAEEVKFHAEKDLNTTVKNNETHTVMVDRTKTI
                     IKNETNSIGEDRNTTVTKNDGLSVKLAQTINIGTTYRLDVGDQFTLRCGNAALVLHKD
                     GSIEFCGKQLMLHTSDVMQLIGKGIDMNPDGGTAVTADDIAPLPTSE"
     gene            3722..4168
                     /locus_tag="OQP62_003511"
     CDS             3722..4168
                     /locus_tag="OQP62_003511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DcrB-related protein"
                     /protein_id="HCS1722957.1"
                     /translation="MDRPYRIQEGCFVLPETFTDRSVNIFILEGNERTSPSLNISRDT
                     LKPDEDLPAYIDRQIALMKKNLGQHRVLSRAPAQAGTGNDALMGEQIAATHKSGKTEV
                     YQRQAGFIATPGKVLVFTLTSPRPFDDKADLLWNTWLAGFQPDKNE"
     gene            4187..7939
                     /locus_tag="OQP62_003512"
                     /pseudo
     CDS             4187..7939
                     /locus_tag="OQP62_003512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459289.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PAAR domain-containing protein"
BASE COUNT         1918 a         1992 c         2542 g         1582 t
ORIGIN      
        1 ggctgggctg tacagatgaa tagtgggata gttggatcta ccgggcatac gttacctgcc
       61 agggcaaggc tggttctggc agcagaacag tgaagggcgg tatatggatg cactgcggct
      121 ggtggatgaa aaaaatagag gtcagatgct gtgaaaaagt acgctgtaga ggttctgttt
      181 atgtctgcct gtgcaggaat gttcctgccc gtatttgcct ggggcggaac agatgtaaac
      241 attgataacc cgctggcgga gtgtgtggat atccatcccg ttcatcgtca ggaaatggat
      301 aaccttacca ttctgaaaac aacggtcaca ctgaaaaaaa gtaccggtga atgtggctgt
      361 ttctcagcat taatcagcta taccagctta ctggcgcagg atgttgaggg ttacggacgc
      421 ggaagtgcat attcccttca ggaggggaat atctcactgg cgaagatgca gggacgttat
      481 cctttcagct ttgtattatc ggtggataac cagtctgtac gggatcagaa gctggcgcta
      541 atgatacgtt gtacaccacc gctgtaatac acagaatagt cagggagaag atgatggcag
      601 taagactgac ttttgacggg caaaagctga catggcctgg tatcgggata tttaaggcga
      661 ccacggggtt accggattta cagtggccag ataaacagtg tgtgccggat gcggcgatac
      721 cggaagggaa ttataaattg tttattcagt ttcaggggga ggcaccgata agaaatgctg
      781 cggattgtga tctgggacca tcatggggct ggagtaccat tccgcgaggc caggctgccg
      841 gaacatgtga gatatactgg gcgaactggg gatataaccg tatccggctg gaatcagcgg
      901 atgagaagac ccgaaaagcc tgtgggggca agcggggtgg tttttatatc catgattcca
      961 ccaaaggtta cagccatggt tgtattgaag tggaaccggt gtttttccgt attctgaaac
     1021 aggagacgta aaaagaaaat ggtgaaaaga tatttacggt taatgttaag tatgtttctg
     1081 gtcagcaaac gaatggtgga acaaaacaat aataccgtta aaaccggatc aaattatcgt
     1141 gtctgaacgt gctgtggttg acaatgatta caatggtggc cagataagta acgagcacca
     1201 atgataaagt atatgactgg cggtgtgctg gttattaatc aaatttttat aaaatgcaat
     1261 gcgaatctgg taagcgtaat aaaaataaaa tcataatatt gttatattca tttccttatt
     1321 tatgtaattc agtatttatg ttatgtgcta atttttgtgt ttttattttc atggctcttg
     1381 tcagcaatat accctgttct tctggtaaat atttaaatat aacaggctgg ttgcattata
     1441 aagtgcgggg cactgtttcc tgacggtgag tctatttatt ttaatccggt attaaaggag
     1501 tcactaccat gagttttgta tccacaaata ataaatccgg tatgggaggg ctgacgacaa
     1561 ccacgccgcc gataaccgga gaaagtggcg gtgtcaccgc agattcagtc gccggaagcg
     1621 tggcagatgc ggcagaagcc gccgtggaac aggctgcggg atcgctgttt ggcgcattgc
     1681 cggagccatc aggactggtg aaagccgcgg tggcagcggc gcaggctgcc gccgctgcag
     1741 gtatggcgca ggatgcggta tcggccatcg tctctgctgt tgcaggcggg ccgggggcgc
     1801 ataatgtgac ggtcagcggc agcgccgtac cgccgggcgc attactgttc gccagcctgg
     1861 acggcggcga aacattaagt gaactgttca gttatgtggt acagctaaaa acgcccgaca
     1921 ccctgaatct gggctatgtc tccccggcgg ccaacctgcc gctcaaaccg atggtgggca
     1981 aagatctgtg cgtcaacatc gaactggatg gtggcggtaa acgacatatc agcgggctgg
     2041 tcacggcggc gcgggtggtg ggccatgaag ggcgttcggt tacctatgag ctgcgtatgg
     2101 agccgtgggt aaaactgctg acccatacca gcgactacaa agcattccag aataaaaccg
     2161 tggtggatat tctggatgag gttctggcgg aataccccta cccggtggaa aagcggctgg
     2221 tggaaagcta cccggtacgc acctggcagg tgcagtacgg tgaaactgat tttgattttc
     2281 ttcagcgact gatgcaggag tggggcatct actggtggtt tgagcacagc gaggacagcc
     2341 acacgctggt gctggcggat gccatcagcg cccacaaagc atgtccggac tcgccgctgg
     2401 tcgagtggca ccaggaaggg ctgaagctgg acaaggagtt tatccacact atcacggcaa
     2461 acgagagtct gcggactggc cagtgggtgc tggatgattt cgattttacg aagccacgtt
     2521 cattgctggc aaacaccgtg gcaaacccgc gtgaaaccgg tcatgccacc tacgagcatt
     2581 atgagtggcc gggagactac ttcgacaaga gtgaaggcga gatgctgacg cgcattcgta
     2641 tggaagcgca gcgcagcccc ggcagtcggg tgctgggggg agggaatatc cgcacactca
     2701 tgaccggtta taccttcacg ctggaaaact atcccaccgc cgaagtcaat caggaatacc
     2761 tgctgatgca gaccttgctg tttgtacagg acaacgcgca gcacagcggg caggaccagc
     2821 actttacctt ttccacccgt tttgaactgc acccgacccg tgaggtgttc cgcccgcagc
     2881 ggacggtgag caaaccccac accaaagggc cgcagagcgc catcgtcacc ggcccggcgg
     2941 gccaggaaat ctggacggat cagtacgggc gggtaaaggt acagtttggc tgggatcgct
     3001 acggcaaaat ggatgaaaac agctcctgct ggatacgcgt cagctaccca tgggcgggca
     3061 aaggcttcgg gatgatccag atcccgcgta tcggccagga agtgctggtg gatttcaaaa
     3121 acggcgatcc ggatctgccg atcatcgtgg ggcgtaccta caaccaggac accatgccgc
     3181 cgtggggact gccgggaatg gcgtcgcaga gcgggatctt cagccactcg ctgtatggcg
     3241 ggccaacgaa cggcaacatg ctgcgttttg acgacaaaac gggcgcggag gaagtgaagt
     3301 tccacgcgga aaaagatctc aacaccacgg tgaagaataa tgaaacgcat acggttatgg
     3361 tggatcgcac taaaaccatt attaaaaatg aaaccaacag tattggtgaa gacagaaaca
     3421 ccacggtaac gaagaatgac ggcctttccg taaaactggc gcagacgatc aatatcggca
     3481 ccacttatcg tttagatgtt ggcgatcaat tcacacttcg ctgcggcaat gcggcgcttg
     3541 ttttacataa ggacggctcc attgagtttt gtggcaagca actgatgttg cataccagcg
     3601 atgtcatgca actgattggt aaaggtattg atatgaaccc ggatggcggc acagccgtaa
     3661 ccgccgatga tattgccccc cttcccacct ctgagtgatc tgaattaaac ctggagttct
     3721 catggatcga ccataccgca tacaggaagg gtgttttgtc ctgcctgaaa catttacgga
     3781 tcgcagcgtc aatattttta tcctggaggg caatgaacga acatcgccca gcctgaatat
     3841 ttcccgcgat acgctaaaac ctgatgaaga cctgcccgcc tatattgacc gccagattgc
     3901 gctgatgaaa aaaaatctcg gtcagcaccg ggtattgtcg cgagcgcctg cacaggcagg
     3961 aacgggcaat gatgccctga tgggggaaca aattgccgcc acccataaat ccgggaaaac
     4021 ggaagtgtac cagcgtcagg ccgggtttat tgcaacccct ggcaaggtac tagtcttcac
     4081 cctgaccagt ccccgtcctt ttgatgataa agcagaccta ctctggaaca cctggctggc
     4141 aggctttcag ccggataaaa acgaataatc acacggaggt gtgaccatgt atgaagcagc
     4201 ccgtgtggat gaccctatct accacaccag tgcgctcgcc gggtttctta tcggcgctat
     4261 catcggcatc gccattatcg cgcttgccgc ctttgccttc tttagctgcg gttttcttgc
     4321 cgggctgatt ctgggtttta tggccgatca aatagcctcc ggggtattgc aactgggcga
     4381 ggccatcggg cgctccatcc accacacggc aggaaaaatc ctcaccggtt cggagaatgt
     4441 cagcaccaac agtcgcccgg cggcgcgcgc ggtactgagt acggtgaaat gcgataacca
     4501 tatcgcagaa aaacgcatcg cccagggctc cggcaatatt tacatcaaca gccagcctgc
     4561 cgcccgtaag gatgaccata ccgaatgcga tgcggtggtt gaagacggtt cgccgaatgt
     4621 gtttctcggc ggcggcacac agacggtact ggaaatcagt tctgaaattc cggactggct
     4681 gcgcaaggtg gtggatgtat tgtttgtcgt ggcgagtctg ctcggcgggc tggccggggc
     4741 gtggcggcag gcggcaaagc tggggacgaa atttggcact aaatgtgccg ctaagtttat
     4801 cggcggggag cttaccggga tggccgtgag tgaggctatc agcgggctgt tcagcaatcc
     4861 ggtggatgtg accaccgggc agaaaatcct gctgccggaa acggacttca ccctgcccgg
     4921 tcgcctgccg gtcacctgct cgcgttttta cgccagccac ctggaaaccg tgggactgtt
     4981 gggacagggc tggcggctga actgggaaac cagcctgcgc gaggacgatg aacacatcac
     5041 gctgaccggc gtacaggggc gggaactgcg ttacccgaaa atgatgctga cgcccggcca
     5101 ccagatattt ggcccgaaag aacagttata cctcagccgc ctgcatgacg ggcgttacgt
     5161 gctgcattac accgatcgca gctattacgt atttggtgat tttgacagtg acggcatggc
     5221 atacctgctg tttatggaga cgccgcaccg ccagcgcatt gtcttcgggc acgaaggagg
     5281 cagactggta cggatagcct ccagcagcgg gcatcacctg ttactgcacc gcacacagac
     5341 cccggcaggg gagcggctgt cgcgaattga actggtgcag ggcggcacct gtggcaatct
     5401 ggtggagtac cggtatgacg ataacggtca actgaccggc gtggtgaacc gggcgggaac
     5461 gcaggtgcgg cagtttgctt atgaaaacgg gctgatgacg gcgcacagca atgcggcggg
     5521 gttcacctgc cgctaccgct ggcaggaact cgacggcgcg ccgcgcgtga cggagcacga
     5581 caccagtgac ggtgaacatt accgctttga ctatgatttt gccgcaggca ccaccaccgt
     5641 caccggcagg cagggggagt catggcagtg gtggtacgac agggagacgt atatcaccgc
     5701 gcaccggacg ccgggcggtg gaatgtaccg cttcacgtac aacgaagacc acttccctgt
     5761 caacattggg ctgcccggcg gtcgcacggt ggcgtatgaa tatgacatcc agaaccgggt
     5821 ggtgaagacg acagatccgg aaggccgggt gacgcagacg cagtggaacg gcgagttcga
     5881 cgaaatcacg cgcacggcgc tggacgatga cgctgtctgg aaaacgcagt acaacgccca
     5941 cggccagcca gtgcaggaga cggacccgga agggcgggtg acgcagtacg cttacgatga
     6001 acaggggcag atgtgcagcc ggacggatgc ggcgggcggc acggtggtga cggcgttcga
     6061 cagccggggg cagatgacgc ggtacaccga ctgttcaggg cgtagcacag gatatgacca
     6121 cgatgaggac ggcaacctga cgcgggtgac ggacgcggaa gggaaggtgg tacgcatcag
     6181 ctacaaccga cttgggttgc cggagacggt gaactcaccg gggaaacagc aggacaggta
     6241 tacctggaat gcgctggggc tgatgagcag ccaccggcgc atcacgggga gcgtggagag
     6301 ctggcggtat acgccgcgcg gtctgctggc ggcgcacacg gatgaggaga agcgcgagac
     6361 gcgctggcag tacacgccgg aaggccgggt gaccgcgctg accaacggca acggggcgca
     6421 gtaccggttc agtcacgatg cggacggcag gctgatgcgt gaggtgcgcc cggacggact
     6481 gagccgtact tttatcctgg acgacagcgg ttatctgacg gcgatacaga ccacgggtac
     6541 gcagggcggc gtgcggcggg agacgcagca gcgggatgcg ctgggccgtc tgttacggac
     6601 ggagaatgaa cacggccagc ggacgttcag ctacaaccgg ctggaccaga taacggcagt
     6661 gacgctcacg cccacggagg cggggcaaca gcagcaccgg atgcaggccg acacggtgcg
     6721 ttttgagtat gaccgcagcg gctggctgac ggcggagcac gcggggaacg gtagcatatg
     6781 ttatcagcgc gacgcgctgg gcaacccgac ggacatcacg ctgccggacg ggcagcacct
     6841 gacgcatctg tattacggga gcgggcatct gttacagacg gcgctggacg gcctgacggt
     6901 gagcgagtat gagcgcgaca gcctgcaccg tcagataatg cgcacgcagg ggcagcttgc
     6961 gacgtacagc ggctatgacg acgacgggct gctgagctgg cagcgcagcc tggcgcccgg
     7021 cagtgcccct gttcttcccg gccagcgccc ggcgcggcag ggctgcgtga cgtcgaggga
     7081 ctattactgg aacaaccacg gcgaggtggg cacgattgac gacggcctgc gtggcagcgt
     7141 ggtgtacagc tatgacagaa gcggttacct gaccgggcgc tcaggtcaga tgtatgacca
     7201 tgaccgttat tattacgata aggcgggcaa cctgctggat aacgaagggc agggtccggt
     7261 gatgaacaac cggctgccgg gctgtggtcg tgaccgttac ggttataacg agtggggcga
     7321 gctgaccacg cggcgcgacc agcaactgga gtggaacgcg caggggcagc tgacgcgggt
     7381 catcagcggc aacacggaga cgcactacgg ctacgatgcg ctggggaggc gaatccgcaa
     7441 ggcgacgtac gggcggcaca cgggccatac ggcgcggagc cggacggact ttgtgtggga
     7501 ggggttcagg ctgttgcagg agaacgtgca gcagcagggc tggcggacat atgtgtacga
     7561 tgcggaacag ccgtacacgc cggtggcgag cgtgacgggg cggggagaaa gcaggcaggt
     7621 gtggtattac cacacggacg tgacgggcac gccgcaggag gtgacggcgg cggacggaac
     7681 gctggtgtgg gcggggtata tcagggggtt tggagagaat gcggcggaca tcagcaacag
     7741 cggggcgtac tttcaccagc cgctgcggct gccggggcag tattttgacg acgagacggg
     7801 gctgcattac aatctgttca gatattatgc accggagtgt ggacggttcg tcagtcagga
     7861 tccgattggg ttaaggggcg ggttaaacct gtatgcgtac tgccctaatc cactgacatg
     7921 gatagatcct ctgggactgg atttacacca tataattccg caagaggttt ggaaaacttt
     7981 taaaacggat ttaaaaaaag tcaccggata tgtgcaaaac gtcacgaaga aagc
//
LOCUS       DAJVSD010000201         8032 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.201, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000201 DAJVSD010000000
VERSION     DAJVSD010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 8032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8032
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.201"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(248..1438)
                     /gene="glpC"
                     /locus_tag="OQP62_003513"
     CDS             complement(248..1438)
                     /gene="glpC"
                     /locus_tag="OQP62_003513"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic glycerol-3-phosphate dehydrogenase
                     subunit C"
                     /protein_id="HCS1722958.1"
                     /translation="MSDTRFESCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLK
                     DGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFILSHTDLMG
                     SVSTPFAPVVNTATALKPVRQLLDYALKIDHRRTLPKYSFGTFRRWYRSVAAQQAKYK
                     DQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQ
                     AISNVESLREAIAVKGIPVIATSSTCTFALRDEYPEVLDVDNAGLREHIELATRWLWR
                     KLDAGKTLPLNPLPLKVVYHTPCHMEKMGWTLYTLELLRQIPGLELTVLDSQCCGIAG
                     TYGFKKENYPTSQSIGAPLFRQIEESGADIVVTDCETCKWQIEMSTSKRCEYPITLLA
                     KALG"
     gene            complement(1435..2694)
                     /gene="glpB"
                     /locus_tag="OQP62_003514"
     CDS             complement(1435..2694)
                     /gene="glpB"
                     /locus_tag="OQP62_003514"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase subunit GlpB"
                     /protein_id="HCS1722959.1"
                     /translation="MKFDTVIMGGGLAGLLCGLQLQQHGLRCAIVTRGQSALHFSSGS
                     LDLLSALPNGQPVTDITAGLDALRRQAPEHPYSRLGAQKVLTLAQQAQTLLNASGAQL
                     YGDVQQAHQRVTPLGTLRSTWLSSPEVPVWPLSAQRICVVGVSGLLDFQAHLAAASLR
                     QRDLNVETAEIDLPELDVLRDNPTEFRAVNIARLLDNEEKWQLLYDALSPIATNCDMI
                     IMPACFGLANDTLWRWLNERLPCALTLLPTLPPSVLGIRLHNQLQRQFVRQGGIWMPG
                     DEVKKVTCRRGTVSEIWTRNHADIPLRPRFAVLASGSFFSSGLVAEREGIREPILGLD
                     VQQTATRAEWYQQHFFDPQPWQQFGVVTDDAFRPSLAGNTVENLYAIGSVLAGFDPIA
                     EGCGGGVCAVSALQAAHHIAERAGEQQ"
     gene            complement(2684..4312)
                     /gene="glpA"
                     /locus_tag="OQP62_003515"
     CDS             complement(2684..4312)
                     /gene="glpA"
                     /locus_tag="OQP62_003515"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic glycerol-3-phosphate dehydrogenase
                     subunit A"
                     /protein_id="HCS1722960.1"
                     /translation="MKTRDSQASDVIIIGGGATGAGIARDCALRGLRVILVERHDIAT
                     GATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTDGLFITLPEDGLA
                     FQATFIRACEAAGIRAEAIDPQQARIIEPSVNPALIGAVKVPDGTVDPFRLTAANMLD
                     AREHGAIVLTAHEVTGLIREGATVCGVHVRNHLTGETQTLHAPVVVNAAGIWGQRIAE
                     YADLSIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSTHIDYN
                     EIDSNRVTADEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIV
                     LFDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCITADTPLPGSKES
                     TEHTLKRIISLPAPLRGSAVYRHGDRTPGWLSEGRQHRSLVCECEAVTAGEVQYAVEN
                     LTVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTAAQSITQLSEFLNERWKG
                     VQPVAWGDALRESEFTRWVYQGLCGLEKEHQDEI"
     gene            4545..5903
                     /gene="glpT"
                     /locus_tag="OQP62_003516"
     CDS             4545..5903
                     /gene="glpT"
                     /locus_tag="OQP62_003516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HCS1722961.1"
                     /translation="MLSIFKPALHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLV
                     RKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL
                     AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPSCGRTMVHWWSQKERGGIVSV
                     WNCAHNVGGGIPPLLFLLGMAWFNDWKAALYMPAFGAIVVALFAFAMMRDTPQSCGLP
                     PIEEYKNDYPDDYNEKAEEELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS
                     PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGASGVFFMTLVTI
                     ATIVYWMNPAGNPNVDMACMIIIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG
                     YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLVVVMIGEKRHHDELQLKRN
                     GG"
     gene            5908..6978
                     /gene="glpQ"
                     /locus_tag="OQP62_003517"
     CDS             5908..6978
                     /gene="glpQ"
                     /locus_tag="OQP62_003517"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HCS1722962.1"
                     /translation="MKTTLKNLSVALMLAGMTIGSGAVAAEKVVIAHRGASGYLPEHT
                     LPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAI
                     DFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRIHTFEEEIEFVQGLNHSTG
                     KNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYIGKQDNVYLQCFDVAELKRIKNE
                     LEPKMGMDLNLVQLIAYTDWNETQQKQPDGRWVNYNYDWMFKPGAMKQVAEYADGIGP
                     DYHMLVAEGSTKGNIKLTGMVQDAHQNKMVVHPYTVRADQLPDYATDVNQLYDILYNK
                     AGVDGLFTDFPDKAVMFLQKND"
     gene            complement(7094..7972)
                     /locus_tag="OQP62_003518"
     CDS             complement(7094..7972)
                     /locus_tag="OQP62_003518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1722963.1"
                     /translation="MTLTQIHALLAVLEYGGFTEASKRLYMTQSAVSQAISALEEELG
                     VDILIRERRKEIELTAAGSRIVRHLRAIQRDVNAVKEIVEQEKKNPARTLRIGCFPSA
                     CACILPGVIRYFESHHPNVKIIPYEENSTAIIDSLQDGSIDAGFVPFPVNGMYCVPIY
                     RDKFTVVVPENHPLAANSTVTVEELMDEPLIVSKGRYELSIMALFKEKGIEPIFKYEF
                     NHPDTALNFIRQGLGIALLPELTLKATTGKLCSVALEPTFYRQISLLAKEPPVEGSPL
                     FLLQKCMETLTDEGLL"
BASE COUNT         1816 a         2079 c         2225 g         1912 t
ORIGIN      
        1 tggtaacgcg gcgatacaag agatattgct ctataaacag taacgtcgtt atctgtcatg
       61 ccaccgtggg ttagcggtca tggttaacca aatagggcag gttattgcaa agagacatcc
      121 gcgtttatac ccaaaataat ccgtagccaa cacataagca acttgaagta tgaagggtat
      181 atgtctgatg gaaaatcggc cctggtgagt agagtaatgg cgccggaggg gctccggcgc
      241 tttttactta gcccagcgct ttcgccagta gcgtaatggg gtattcgcag cgtttgcttg
      301 tagacatctc aatttgccac ttacaggttt cacaatcggt gacgacaatg tcggcgccgc
      361 tctcttcaat ctggcggaac agcggcgcgc cgatggactg tgatgtcgga tagttttcct
      421 ttttaaatcc atacgtaccg gcaatgccgc agcactgtga atcaagtacc gtcaattcaa
      481 gccccggaat ttgccgcaac agttcaagcg tgtaaagcgt ccagcccatt ttttccatat
      541 gacacggcgt atggtagacc actttcagcg gcaaaggatt aagcggcagc gttttcccgg
      601 catccagttt gcgccatagc cagcgggtgg ccagctcgat atgttcgcgc agcccggcgt
      661 tgtccacgtc cagcacttca ggatattcat cgcgcaacgc aaacgtacag gtggatgacg
      721 tggcgatgac cggaatacct ttgacggcaa tcgcctctcg tagcgactcc acattgctga
      781 tagcctgttt gcgagcttta tccgtaaaac cgttagcgat cagcggtacg ccgcaacact
      841 tctctttact cagtaactgt acgccagtac ccattgcgtt cagcacctta atcagatctt
      901 ttccgagctg cggatggttg taattcacaa aacagccatg gaaaaaggcg acctgatctt
      961 tgtatttagc ctgctgcgcc gccacgctac gataccagcg gcggaaggtg ccgaaagagt
     1021 attttggtaa ggtgcggcga tgatcgattt tgagcgcgta atcaagcaac tggcgcactg
     1081 gctttaatgc ggtggcggta ttgaccaccg gcgcgaacgg cgttgaaacg ctgcccatca
     1141 gatcggtatg gctgagaata aagttacgca atgacgggcg cgtcgtatcg tatttcgcgc
     1201 gggcgcgctg gatgatatcg ccaatcttca cgtccgacgg acaggcgacc tcacaccgtt
     1261 tgcagttaat gcaatatttc agcgcctcat catacagcgc gccgtctttc agacgcaggc
     1321 gttcgccatc cggtccggcc tgtttagggc cagggtagcc aggattaacg cggctgaccg
     1381 ggcacgcggt ggtgcacacc gtacatttaa tacaactttc aaaacgtgtg tcgctcattg
     1441 ctgttctcct gcacgctcag cgatatggtg cgcggcctgg agggcgctga ctgcgcagac
     1501 gccgccgccg catccctcag ctataggatc gaatcccgcc agcacagaac ctattgcata
     1561 cagattttct accgtgttgc ccgcaaggga ggggcggaaa gcgtcatccg tcacgacgcc
     1621 aaactgctgc cagggctgtg ggtcgaagaa atgttgttga taccattcgg cgcgggtggc
     1681 cgtttgctgt acgtcgagcc ctaaaatagg ttcgcggatc ccttcgcgct cggcaaccag
     1741 cccgctacta aagaagctac cgctggcaag tacggcaaaa cgcgggcgca gtggaatatc
     1801 ggcatggttg cgggtccata tttcgctcac ggtaccgcga cggcaggtga ctttcttcac
     1861 ttcatcgccc ggcatccaga tgccgccctg acggacaaac tggcgctgga gttgattgtg
     1921 cagacgaata ccgagcaccg atggcggcag cgtcggcagc agcgtgagcg cgcagggcag
     1981 acgttcgtta agccagcgcc acagcgtatc gttcgccagc ccgaaacagg cgggcatgat
     2041 gatcatgtcg cagtttgtcg ctattggcga cagcgcgtcg tacagcagct gccatttttc
     2101 ttcgttatca agcagacgcg cgatattgac cgcgcgaaat tccgtcgggt tatcacgcag
     2161 tacgtccagt tccggaaggt cgatttctgc ggtttcaacg ttgaggtcgc gttggcgcag
     2221 cgacgctgcc gcaaggtgcg cctggaaatc cagtaatccg ctaacgccga cgacgcaaat
     2281 tcgctgtgcg gataacggcc agaccggtac ttccggcgag ctaagccagg tagaacgcaa
     2341 tgtgccaagc ggcgtgacac gctggtgcgc ctgctgtacg tcgccgtata actgcgcgcc
     2401 gctggcgtta agtagcgttt gcgcctgttg cgccagcgta aggacttttt gcgcgcctaa
     2461 acgcgaataa ggatgttcag gcgcctggcg gcgcagcgca tcaagcccgg cggtaatgtc
     2521 ggtcaccggt tggccgttgg gcagggcgct aagtagatcc agcgagccgg aggaaaaatg
     2581 cagcgcgctt tgtccgcggg tgacgatggc gcagcgtaat ccatgctgct ggagttgcag
     2641 tccgcatagc aaaccggcga gaccgccgcc cataataacc gtatcaaatt tcatcctggt
     2701 gctccttctc cagaccgcat aatccctgat aaacccagcg cgtgaattcg ctttcgcgca
     2761 gcgcgtctcc ccaggcgaca ggttgtacgc ctttccagcg ctcattcaga aattcagaga
     2821 gttgcgtaat agattgcgcc gcggtcgtca cattaaaacg ctgcaatagc ccggccgcgc
     2881 ggcaggcgca cagttcgccc tggcaagtgc ccatccctac gcgggtgcga cggcgcagat
     2941 ccagcaggct attcacggtt aagttttcga cggcatactg cacttccccc gccgtgacgg
     3001 cctcgcattc acagaccagg ctacggtgtt ggcggccttc actcagccac cccggcgtgc
     3061 gatcgccatg ccgataaacc gccgatccgc gtagcggcgc gggaagcgag ataatgcgtt
     3121 tcagcgtatg ttccgtagac tcttttgagc caggcaacgg cgtatccgcc gtgatgcagg
     3181 ggcgagtatt gcccaacttg cggcacacgg cgtcggtcgc ccattccgcc atcaggcgat
     3241 aagtcattag cttcccgccg gtaatggtaa tgaagccatc aagcccgtcg cgttcggcgt
     3301 ggtcgaacaa cacaataccg cggctgacgt tacgaccgct gggatcgtca tcgctggcca
     3361 ccagcgggcg gacgccggaa tacgcgcgca gaatacgtgt cttcgccatg acaggggcca
     3421 gtttttcccc ttcacgcagc aggatatcga cttcatctgc ggtgacgcgg ttgctgtcta
     3481 tctcattgta atcaatatgg gtagaggtgg tgccgatcag tgaaatcgta tcgccaggta
     3541 ccagaatgtc ggcatccgat ggtttccggc agcggttaat gacatgctgg ttgatccgat
     3601 ggtccatgat caacagcgag cctttcgccg ggaacatgcg aatactcagg tcggcgtatt
     3661 cggcgatccg ttgcccccag ataccagccg cattgaccac caccggcgcg tgaagcgtct
     3721 gggtttcgcc agtgagatgg ttacgcacat ggacgccgca gaccgttgcg ccttcacgaa
     3781 tgagcccggt cacttcatgc gccgttaaca cgattgcgcc atgttctctg gcatccagca
     3841 tattggcggc ggtcaggcgg aaagggtcta cggtgccatc cggcactttt accgcaccga
     3901 tgagcgcagg gttaacggaa ggttcgatga tgcgagcctg ctgcggatcg atggcttcag
     3961 cgcgaatgcc tgccgcttca caggcgcgaa taaaggtggc ctgaaacgca agaccatctt
     4021 ccggcaacgt aataaacaga ccatccgtcg gttcgacgca atggcgggcg atccgtttta
     4081 aaatctggtt ttcactaatg cactcgcgcg cggattccgc gtcggtaacc gcataacgag
     4141 cgccgctgtg cagcagcccg tggttacgcc cggtcgcgcc ggtcgctata tcatgccgct
     4201 ccaccagaat gacacgtaaa ccgcgcagcg cgcagtcgcg ggcgatccct gcgcctgttg
     4261 ctccaccgcc aatgataatc acgtcacttg cttgcgagtc gcgagttttc attgtttttc
     4321 cttacagttc gttttttatc atttagccat acaaatcata tggaatgttt gatttcgcgc
     4381 gcctttctga acattagtca taaaactgta acaatatgtg ctgtaattca cattaacgtg
     4441 acgtatcttt acttaacatc gcggccacac tgggagcagc ggggttgttt gaacgaactg
     4501 cggtgtttac ctctaaataa aatacgggct acggaggcta caatatgttg agtattttta
     4561 aaccagcgct tcataaagcg cgcttgccag cggcggagat tgatccgacc tatcgccgat
     4621 tacgctggca gattttcctg gggatattct ttggctatgc cgcgtattat ctggtgcgca
     4681 agaactttgc cctcgcgatg ccctacctgg tagaacaggg tttttcacgc ggcgatctgg
     4741 gctttgcgct gtccgggatt tctatcgctt atggtttttc gaaatttata atgggttcgg
     4801 tgtccgatcg ctcgaatccg cgcgtttttc tgccggcagg gttgattctg gccgcagcag
     4861 tcatgttgtt tatgggcttt gtgccgtggg cgacatccag catcgccgtg atgtttgtgc
     4921 tgttgttcct ttgcggctgg ttccagggga tggggtggcc gtcgtgcgga cgtacgatgg
     4981 ttcactggtg gtcgcagaaa gagcgcggcg gcattgtgtc ggtctggaac tgtgcgcata
     5041 acgtcggcgg cgggatcccg ccactgctgt tcctgctggg gatggcgtgg tttaacgact
     5101 ggaaagcggc gctctatatg ccagcctttg gcgcgattgt ggtggcactg ttcgctttcg
     5161 caatgatgcg cgatacgccg caatcctgcg gtctgccgcc tatcgaagag tataaaaacg
     5221 actatccgga tgactacaac gaaaaagcgg aagaagagct gactgcgaag cagatcttca
     5281 tgcagtacgt actgccgaac aaattactgt ggtatatcgc tatcgccaac gtgttcgtct
     5341 acctgctgcg ctacggtatc ctcgactggt caccgaccta cctgaaagaa gtgaagcatt
     5401 tcgcactcga taaatcctcc tgggcctact tcctctatga atacgcgggt attccaggca
     5461 cgctgctgtg tggctggatg tcggataaag tcttccgcgg caaccgtggc gcgtcgggcg
     5521 tattctttat gaccctggtc actatcgcga ccatcgttta ctggatgaac ccggcaggca
     5581 acccgaacgt tgatatggct tgtatgatta tcatcggctt cctgatctac ggcccggtaa
     5641 tgttgatcgg tctgcacgcg ctggagctgg cgccgaaaaa agcggcgggt acggcggcgg
     5701 gctttaccgg tctgtttggt tacctgggcg gttctgtcgc tgcaagcgcc attgtgggtt
     5761 ataccgttga cttcttcggt tgggatggcg gctttatggt gatgattggc ggtagcattc
     5821 tggcggtaat cctgctggtg gtcgtgatga ttggcgaaaa acgccatcat gatgagctgc
     5881 agttaaaacg caacggaggc taataacatg aaaaccacac tgaaaaacct tagcgtggcg
     5941 ttgatgttgg caggaatgac catcggaagc ggcgccgtgg cggctgaaaa agtcgtcatc
     6001 gcccaccgtg gcgccagcgg ttatctgccg gagcatacgc taccggcgaa agcgatggcg
     6061 tatgcgcaag gggcagatta tctggaacag gatttagtga tgacaaagga cgaccatctg
     6121 gtcgtcctcc atgaccacta ccttgaccgg gtgactgacg tcgctgatcg ttttccggac
     6181 cgggcgcgta aagatgggcg ctattacgct atcgatttta cgctggatga aattaaatcc
     6241 ctgaagttta ccgaagggtt tgatattgaa aacggcaaaa aagtacaaac ttatccgggc
     6301 cgtttcccga tgggaaaatc tgatttccgc attcatacct ttgaagagga aattgaattc
     6361 gttcagggat taaatcactc taccggtaaa aatatcggta tttatccgga aattaaagca
     6421 ccgtggttcc atcatcagga agggaaagat attgccgcga aaacgctgga agtgctgaag
     6481 aagtatggtt acatcggcaa gcaggacaat gtctatttgc agtgttttga tgtcgctgag
     6541 ctgaaacgta ttaagaatga actggaaccc aaaatgggga tggatctcaa tctggttcaa
     6601 cttattgcgt ataccgactg gaatgaaacc cagcagaaac agccggacgg tcgttgggta
     6661 aattacaact acgactggat gtttaagccg ggcgctatga agcaggtggc ggaatatgcg
     6721 gacggtattg gtccggatta ccacatgttg gtcgcggaag gttcgacgaa agggaatatc
     6781 aagctgactg gaatggtgca ggacgcgcat cagaataaga tggtagtgca tccttacact
     6841 gtgcgtgccg atcaattgcc ggactatgcc acagacgtca atcagttata cgatatcctg
     6901 tataacaagg cgggcgtcga cgggctgttc accgacttcc cggataaggc ggtcatgttt
     6961 ctgcaaaaaa atgactaaag gtatgccata gtagaagtga agcgccggat gaggacataa
     7021 acgcctcatc cggcctggcg caacgtttgc cagcgtaagt ctgataaacg caatgtcatc
     7081 aggcggtgtt gttttatagc aaaccctcat cggtcagtgt ttccatacat ttttgtaata
     7141 aaaatagcgg gcttccttct accggcggtt cttttgctaa cagtgaaatt tgtcgataaa
     7201 aggtgggttc cagcgccacg gagcataatt ttcctgtcgt ggcttttaag gttaattctg
     7261 gcaataaggc gatacctaat ccctggcgaa taaaattcag cgcagtatcg ggatggttaa
     7321 attcatattt aaatatcggt tcaataccct tttctttaaa caacgccata atacttaatt
     7381 cataacgacc tttactgaca ataagtggtt cgtccatcag ttcttcgacc gttactgtac
     7441 tattggccgc caggggatga ttttcaggca ccactacggt gaatttatcc cggtaaatgg
     7501 ggacgcaata cataccgttg accggaaaag gaacgaaacc ggcatcaata cttccgtcct
     7561 gcagcgaatc aataatagcc gtactgttct cttcataggg gataattttt acatttggat
     7621 gatggctttc aaaatagcga atgacgccgg gtaaaatgca ggcgcaggcg ctgggaaaac
     7681 agccaatccg tagcgtacgg gccgggttct ttttttcttg ttcgacaatc tcttttaccg
     7741 cgttgacgtc gcgctggatc gcgcgtaagt gcctgacgat gcggctaccg gcggcggtaa
     7801 gctcgatctc tttacgacgc tcacgaatca atatgtcaac gccgagctcc tcctcaagcg
     7861 cggagatggc ctggctgacg gcggattgcg tcatgtatag ccgtttgctg gcctcggtaa
     7921 atccgccgta ctccagtacg gcaagcaggg catggatttg ggttagcgtc attagtaaaa
     7981 cctaatcaat ataattaaaa cgattaattt ttctaataaa gtgcacttgt tt
//
LOCUS       DAJVSD010000202         7987 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.202, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000202 DAJVSD010000000
VERSION     DAJVSD010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7987)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7987)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7987
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.202"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            34..1113
                     /locus_tag="OQP62_003519"
     CDS             34..1113
                     /locus_tag="OQP62_003519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HCS1722964.1"
                     /translation="MTCQDKSLLAPGLASTPVIPRYRQIIRKRAVLMSAIALAMMVSL
                     MVDVTCGSSGLPLSALWQALFQPEKVNAGIHVIVWDIRLPYALMALLVGMALGLAGAE
                     MQTILNNPLATPFTLGVSSAAAFGAALAIVLGIGIPGIPAAWFIPANAFIFALLSALL
                     LDGITRWTGVAASGVVLFGIALVFTFNALVAIMQFVADEDTLQGLVFWTMGSLVRASW
                     EKLGVLAVVFIAVLFCALRSAWQLTALRLGEERAMSFGVHVRRLRLLSLLRISLLSAL
                     AVAFVGPIGFIGLVAPHIARILLGEDHRFYLPGSVLIGGLVLSLASIAAKNSIPGVMV
                     PVGIVTSLVGVPFFLSIVLRHRGSL"
     gene            1113..1889
                     /locus_tag="OQP62_003520"
     CDS             1113..1889
                     /locus_tag="OQP62_003520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1722965.1"
                     /translation="MRRLMLRSFSAGYSTQPVIADLNVPLLPRGKITILLGPNGCGKS
                     TLLRSLAGLNNVDGEALLDGEDLMSLSFAERAQKVVFLPQSLPQGVHLHVLESIIVVL
                     RASGGRDNAQGRAQILAILEQLGITHLALQYLDQLSGGQRQLVGLAQSLIRRPELLLL
                     DEPLSALDLNYQFHVMDLVRRDTQAQNRVTIVVAHDINIALRHGDHVLMLKDGRLVAS
                     GAPETVITAERLAEVYRVRGRVERCSQGKLQVVLDGVIAV"
     gene            complement(1980..2732)
                     /gene="gpmA"
                     /locus_tag="OQP62_003521"
     CDS             complement(1980..2732)
                     /gene="gpmA"
                     /locus_tag="OQP62_003521"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000301556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HCS1722966.1"
                     /translation="MAVTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKL
                     LKEEGFSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAE
                     TAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR
                     VIPYWNDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEF
                     DENFKPIKHYYLGNADEIAAKAAAVANQGKAK"
     gene            complement(2956..3996)
                     /gene="galM"
                     /locus_tag="OQP62_003522"
     CDS             complement(2956..3996)
                     /gene="galM"
                     /locus_tag="OQP62_003522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HCS1722967.1"
                     /translation="MLNETPALAPDGQPYRLLTLRNSAGMVVTLMDWGATLLSARIPL
                     SDGSVREALLGCASPEHYPEQTSFLGASIGRYANRIANSRYTFAGETVQLSPSQGENQ
                     LHGGPEGFDKRRWQIVNQNDRQVLFALTSDDGDQGFPGHLCATAQYRLTDDNRISITY
                     RATVDKPCPVNLTNHVYFNLDGDRTDVRQHKLQILADEYLPVDESGIPRQGLKSVANT
                     SFDFRMPKVIASEFLADDDQRKVKSYDHAFLLQTQGDGKKPAARLWSQDGKLQMMVYT
                     TAPALQFYSGNYLAGTPSRGPEPYADWQGLALESELLPDSPNHPEWPQPDCILRPGEE
                     YASLTEYQFIPF"
     gene            complement(3990..5138)
                     /gene="galK"
                     /locus_tag="OQP62_003523"
     CDS             complement(3990..5138)
                     /gene="galK"
                     /locus_tag="OQP62_003523"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001713229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HCS1722968.1"
                     /translation="MNLKEKTRALFAEIFGYPATHTIQAPGRVNLIGEHTDYNDGFVL
                     PCAIDYQTVISCAPRDDRTVRVIAADYDNQVDEFSLDAPIVTHDSQQWSNYVRGVVKH
                     LQQRNNAFGGVDMVISGNVPQGAGLSSSASLEVAVGTVFQQLYHLPLDGAQIALNGQE
                     AENQFVGCNCGIMDQLISALGKKDHALLIDCRTLGAKAVSMPKGVAVVIINSNFKRTL
                     VGSEYNTRREQCETGARFFQQPALRDVSLEAFNAVASELDPVVAKRVRHVLSENARTV
                     EAASALEKGDLQRMGQLMAESHASMRDDFEITVPQIDTLVDIVKATIGDQGGVRMTGG
                     GFGGCVVALIPEDLVPAVQQAVAQQYEAKTGIKETFYVCKPSQGAGQC"
     gene            complement(5141..6187)
                     /gene="galT"
                     /locus_tag="OQP62_003524"
     CDS             complement(5141..6187)
                     /gene="galT"
                     /locus_tag="OQP62_003524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HCS1722969.1"
                     /translation="MTPFNPIDHPHRRYNPLTGQWVLVSPHRAKRPWQGAQETPSQQM
                     LPAHDPDCFLCAGNTRVTGDKNPDYKGTYVFTNDFAALMADTPDAPDSHDPLMRCQSA
                     RGTSRVICFSPDHSKTLPELSLPALTEIVRTWQTQTAELGKTYPWVQVFENKGAAMGC
                     SNPHPHGQVWANSFLPNEAEREDRLQKAYFAEQRPPMLVDYVQRELADGSRTVVETEH
                     WLAVVPYWAAWPFETLLLPKTHVLRITDLSDEQRDSLALALKKLTSRYDNLFQCSFPY
                     SMGWHGAPFNGEENAHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAER
                     LRAVSDIHFRESGV"
     gene            complement(6198..7214)
                     /gene="galE"
                     /locus_tag="OQP62_003525"
     CDS             complement(6198..7214)
                     /gene="galE"
                     /locus_tag="OQP62_003525"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HCS1722970.1"
                     /translation="MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVI
                     ERLGGKHPTFVEGDIRNEALITEILHDHAIDTVIHFAGLKAVGESVAKPLEYYDNNVN
                     GTLRLVSAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL
                     TDLQKAQPEWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRESLAVF
                     GNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLADKSGVHIYNLGAGVGSSVLDVVNAF
                     SKACGKPINYHFAPRRDGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ
                     GYSD"
     gene            complement(7437..>7987)
                     /locus_tag="OQP62_003526"
     CDS             complement(7437..>7987)
                     /locus_tag="OQP62_003526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2167 domain-containing protein"
                     /protein_id="HCS1722971.1"
                     /translation="DDAKNWDADELMDNLRKGTKEANKDRIAKGIEPIEIIGWIEKPT
                     YDATNHRLIWSAAIQDIGTNEPLNEQGVNYNTYLLGREGYFSLNLVTDRGSVDHEIPL
                     AKRILSSVKFNAGQRYADFNESTDKIAEYELAALIGGIAAKKVGLLAMLGIALLKFWK
                     VTAIGVVAVGALARKLLSRKKD"
BASE COUNT         1630 a         2117 c         2250 g         1990 t
ORIGIN      
        1 aattctcttc tgattaataa cgtcgctcga accatgacct gtcaggacaa atcactttta
       61 gcccccggtc tcgcttccac gcccgtcatt ccgcgctatc gccagatcat acgcaaacgg
      121 gccgtgctca tgtcagctat tgcgctggcg atgatggttt cactgatggt ggatgtaacc
      181 tgtgggtctt ctggtttacc gctcagtgcg ctgtggcagg cgcttttcca gccggaaaag
      241 gtgaatgcgg gcatacacgt tattgtctgg gatatccgct taccctatgc cctgatggcc
      301 ctactggtgg gcatggcgtt agggttagcg ggcgccgaaa tgcaaaccat tttaaataat
      361 ccgctggcga cgccgtttac ccttggcgta tcgtccgcgg cggcttttgg cgctgcgctg
      421 gcgattgtgt tggggatcgg tattcccggt attcctgccg cctggtttat cccggccaat
      481 gcgttcatct ttgcgctttt atccgcgtta ctcctggacg gtattacccg ttggacaggc
      541 gtcgccgcat ccggagtggt gttgttcggt attgcgctgg tattcacctt taacgcgttg
      601 gtcgccatta tgcagtttgt ggctgatgaa gatacgctgc aggggctggt attctggacg
      661 atggggagcc tggtccgcgc gtcgtgggaa aaattgggcg tactggccgt ggtgtttatt
      721 gctgtgcttt tttgcgcgtt acgaagcgcc tggcaactca cggcattacg tctgggcgaa
      781 gagagggcga tgagctttgg ggttcatgtc cgccgtttac gcctgctgtc attgttgcgt
      841 atcagcttgt tatcagcgct ggcggtagct ttcgtcgggc cgattggttt tattggtctc
      901 gttgcgccgc acattgcgcg aatactgttg ggggaagatc accgtttcta ccttccgggc
      961 agcgtgctga taggcgggct ggtgttatcg ctggcctcta ttgcggcgaa aaatagtatt
     1021 ccgggcgtca tggtgccggt ggggattgtc acctcgctgg tcggggttcc gttcttttta
     1081 agcattgtat tgcgacatcg ggggagtctc tgatgcgcag gttaatgctc cgctcattta
     1141 gcgccggcta ttccactcag ccggttattg cagatctcaa cgttccctta ctgccgcgcg
     1201 ggaaaattac cattttgctg gggccgaacg gctgtggtaa atcgacgtta ctacgttcgc
     1261 tggccgggct gaataacgtc gacggcgagg cgctgcttga tggcgaagat ctcatgtcgt
     1321 tatcgtttgc cgagcgggcg cagaaagttg tgtttttgcc gcagtcatta ccgcagggcg
     1381 tacatctgca tgtactggag tcgattatcg tggtactgcg ggcatcaggc ggcagagaca
     1441 atgcgcaggg cagagcgcag atactggcta tccttgagca attgggcata acgcatctgg
     1501 cgttgcagta tctcgaccag ctttccggcg gtcagcggca gttagtgggt ctggcgcaat
     1561 cgctgattcg tcgccctgaa cttctgttgc tggatgagcc gctcagcgcg ctggatttaa
     1621 actatcagtt tcacgtaatg gatctcgtgc gtcgggatac ccaggcgcaa aatagggtga
     1681 cgatagtcgt ggcgcatgac attaatattg ccctgcgtca tggtgaccat gtcctgatgc
     1741 taaaagacgg caggctggtc gccagcggcg cgccggagac ggtgattact gcggagcgtc
     1801 tggctgaagt gtaccgggta cgaggacgcg tggagcgctg ttcgcagggg aaattgcagg
     1861 tggtgctgga cggcgtgatc gctgtttaag acatattgcc tgatggcgct gcgcttatcc
     1921 ggcctaccca ttgctcgtag gccggataag gcagttatac cgccatccgg caaaggtgat
     1981 tacttcgctt taccctgatt cgccacggca gccgctttcg cggcgatttc gtcagcgtta
     2041 cccagatagt aatgtttgat cggcttgaag ttttcgtcga actcatacac cagcggcacg
     2101 ccggtcggga tgtttaactc aagaatctca tcttcactca tgttatccag gtatttcacc
     2161 agcgcacgca atgagttacc gtgagcggcg atgatcacgc gctcaccgct cttcatacgc
     2221 ggcaggatgg tgtcgttcca gtaaggaata acgcggtcga tggtcagcgc cagactttcg
     2281 gtcaacggca gctctttctc gctcagtttg gcataacgtg gatcgtgacc cggataacgc
     2341 tcatcatctt tggtcagttc cggcggcgtc acggcaaaac cgcggcgcca ctgcttaacc
     2401 tgctcgtcac catatttttc tgccgtttcc gctttattca gcccttgcaa cgcgccatag
     2461 tgacgttcat tgagtttcca ggatttttcc accggcagcc acgcctgatc cagttcatcc
     2521 agtacgttcc acagcgtatg gatagcgcgt ttcagtacgg aagtgtaggc aaaatcaaag
     2581 ctgaaacctt cttcttttag cagtttaccc gctgcttttg cttcgcttac gcctttttca
     2641 gacaggtcaa catcatacca gccggtgaaa cggttctctt tgttccattg actttcaccg
     2701 tgacgtacca gaaccagctt agttacagcc atactctcac tcctataaat catatgtaat
     2761 gataataatt ctcattatat tgccgcgagg tgttggcggc aatgcttacg cataaccata
     2821 gcgaaaatag tggcgcagtg taaggttctt gtgaactcag agttgcgatt ttgtctttaa
     2881 gtggtggagg tttgagcagg gcaatggcgc gtaggcccga taagcttgcg tcatcgggca
     2941 tgtagcggca tatcgttaga acggaataaa ctgatactcg gtcaggctgg cgtactcctc
     3001 gccagggcga aggatacagt caggctgcgg ccattcagga tgattcgggc tgtccggcag
     3061 cagttcgctt tccagcgcca gcccttgcca gtcggcataa ggttccggtc cgcgggaagg
     3121 tgtacccgcc agataattgc cggaataaaa ctgtagcgcc ggggcggtgg tgtaaaccat
     3181 catttgtagc tttccatcct gtgaccacag acgggccgcc ggctttttgc catcaccctg
     3241 cgtctgtagc aggaaagcat gatcgtagct tttaaccttg cgctgatcgt catcggcgag
     3301 aaactcgctg gcaatgactt ttggcatccg gaagtcaaac gaggtattgg ctaccgattt
     3361 tagcccctgg cgtggaatac cggattcatc taccggcaga tactcatccg ccagaatttg
     3421 cagcttatgt tggcgcacgt cggtccgatc gccgtccaga ttaaaataga cgtggttggt
     3481 caaattcacc ggacagggtt tatcgaccgt cgcccggtag gtgatggaga ttctattgtc
     3541 atcggtcaga cgatattgcg ccgtggcgca aagatggcca ggaaagccct ggtcgccgtc
     3601 atcagaggtg agcgcgaata atacctggcg atcgttttgg ttcacaattt gccagcggcg
     3661 cttgtcaaag ccttccggtc cgccgtgtag ctggttctcg ccctggcttg ggcttaactg
     3721 tacggtttcg ccggcaaacg tatagcggct attggcgata cggttcgcgt aacggccaat
     3781 agaggcgccg aggaatgacg tctgttcagg gtagtgttcc gggctggcgc agcccagcaa
     3841 tgcttcccga acgctgccgt cagacagcgg aatacgggcg gaaagaagag tggctcccca
     3901 gtccatcagc gttaccacca tccctgcgct gttgcgcagg gttagcaggc ggtacggttg
     3961 accatcgggg gccagtgcgg gcgtttcatt tagcactgtc ctgctccttg tgacggtttg
     4021 catacataaa aggtttcttt gattccggtt ttcgcttcgt actgttgcgc aacggcctgc
     4081 tgcacagcgg gaaccagatc ttccgggatc agcgcgacaa cacagccgcc aaagccgccg
     4141 ccggtcatgc gcacgccgcc ttgatcgccg atggtcgctt tgacaatgtc taccagcgtg
     4201 tctatctgcg ggacggtaat ttcgaaatca tcgcgcattg aggcatggga ctccgccatc
     4261 agttggccca tacgttgcaa atcacctttc tccagcgcgc ttgccgcttc aacggtgcgc
     4321 gcattttcgc tcaatacatg gcgaacgcgt tttgcgacta ccgggtccag ttcgctggcg
     4381 acggcattga acgcctcaag gctgacatcg cgcagggccg gctgctggaa gaaacgggcg
     4441 ccggtttcgc actgttcacg gcgggtatta tactcgctgc ccaccagagt gcgcttaaag
     4501 ttactgttga tgatcaccac ggcgacgcct ttcggcatag aaaccgcttt ggcgccgagc
     4561 gtacggcaat caatcagcaa cgcatgatct tttttgccga gcgcagagat gagctgatcc
     4621 ataatgccgc agttacagcc gacaaactgg ttctcggcct cttgtccgtt gagcgcaatt
     4681 tgcgcgccgt ccagcggcag gtgataaagc tgctggaaga cggtgcccac cgccacttcc
     4741 agcgaagcgg aggagcttaa cccggcgccc tgcggcacat tgccgctgat gaccatatcc
     4801 acgccgccaa acgcgttgtt acgctgttgc aggtgtttca ctacgccgcg cacatagtta
     4861 gaccactgct ggctatcgtg ggtcacgatc ggcgcatcca gtgaaaattc gtccacctga
     4921 ttgtcgtaat cggcggcaat cacccgtacg gtacgatcgt cgcgcggcgc acagctaatt
     4981 acggtctggt aatcgatagc gcagggcaga acaaaaccat cattgtaatc agtgtgctcg
     5041 ccgatcagat tgacgcggcc tggcgcctga atcgtgtggg tagcagggta gccgaaaatt
     5101 tcagcaaaca gcgcgcgcgt tttctctttc agattcattt ttatactccg gattcgcgaa
     5161 aatggatgtc gctgaccgcg cgcaggcgtt cagccgcttg ttctgcggtt aaatcacgct
     5221 gggtttccgc cagcatttca tagccgacca taaatttacg gacggtcgca gagcgcagca
     5281 gcggcggata aaagtgcgcg tgcaactgcc agtgtgcgtt ttcttcaccg ttaaacggcg
     5341 cgccgtgcca gcccattgag taggggaagg aacactgaaa caggttgtca taacgactgg
     5401 tcagcttttt caacgccagc gccagagagt cgcgctgctc gtcgcttaaa tcggtaatgc
     5461 gcaggacatg cgttttgggt aacagtagcg tttcgaacgg ccacgccgcc cagtaaggca
     5521 ccaccgccag ccagtgttcg gtttcgacca cggtgcggct gccgtccgcc agttctcgct
     5581 ggacataatc taccagcatt ggcggacgct gttcggcgaa ataggctttt tgtaaacgat
     5641 cttcgcgttc ggcctcattc ggcaggaagc tgttggccca gacctgtcca tgcggatgcg
     5701 ggttcgaaca gcccatcgcc gcgcctttat tttcaaagac ctgcacccac ggataggttt
     5761 tgcctaactc ggcggtctgc gtttgccagg ttctgacgat ttccgtcagc gcgggcaggc
     5821 tcaactccgg cagcgtttta ctgtgatcgg gagaaaagca gatcacgcgg ctggtgccgc
     5881 gcgcgctctg acagcgcatc agcggatcgt ggctgtccgg cgcatccggc gtatcggcca
     5941 tcagcgccgc gaaatcgtta gtaaagacgt aagtcccttt gtaatcggga tttttatcgc
     6001 cggtgacacg cgtattgccc gcacacaaga agcagtccgg atcgtgggcc ggcagcattt
     6061 gctgagacgg cgtttcctgc gccccctgcc aggggcgttt tgcgcgatgc ggcgaaacca
     6121 gaacccactg gccggtaagc gggttataac ggcgatgcgg atgatcgatg ggattaaatg
     6181 gggtcataac aacgtcctta atctgagtat ccctgcggat ggcgtgactg ccagtgccaa
     6241 gtgtcctgcg ccatttcgtc aagcgtgcgg gtgacgcgcc agttcagctc gcgatcggct
     6301 ttgctggcat ccgcccaata cgccgggaga tcgccgtcgc gacgcggcgc gaagtggtaa
     6361 ttaatgggtt taccgcaggc tttactaaag gcgttgacca catccaggac gctactgccg
     6421 acacccgcgc cgaggttata aatatgtacg ccggatttgt ccgccagttt ttccatcgcc
     6481 acgacgtgcc cgtcggctaa gtccataacg tgaatgtaat cgcgtacgcc ggtgccatcc
     6541 tcggtcgggt aatcgttgcc gaaaacggcg agcgattcgc gacgacccac ggcgacctgg
     6601 gcgatatagg gcatcaggtt attcggaata ccttgcggat cttctcccat gtcgcccgac
     6661 gggtgcgcgc cgaccggatt gaaataacgc agcagcgcaa tactccactc cggctgggct
     6721 ttttgcagat cggtgaggat ctgttctacc atcaatttac ttttgccgta ggggctttgc
     6781 ggcgtgccgg taggaaaact ttcgacgtaa ggaattttgg gctgatcgcc ataaacggtg
     6841 gcagaggagc taaaaataag gtttttaacg ttggccgcac gcatggcgct gaccaaccgc
     6901 agcgtaccgt tgacgttgtt gtcatagtac tccagcggct tggcgaccga ttcgccgacg
     6961 gctttcaggc cggcaaagtg aatcacggta tcaatcgcgt gatcgtgcag aatttcggtt
     7021 ataagcgctt cgttgcgaat atcgccttcg acaaaggtcg ggtgcttacc gcccagacgt
     7081 tcaataacgg gcagcacgct gcgcttgctg ttgcagaggt tatcgaggat gacgacgtca
     7141 tgaccatttt gcagcaattg tacgcaggta tgacttccaa tgtaaccgct accacctgta
     7201 accaatactc tcataattcg ctccgttaag cctatggtat ggaataacca tagcataaca
     7261 aagatgcgaa aagtgtgaca tgtaataaat tagtggaatc gtttacacgc tggtgatttt
     7321 acgcatttat atcaattaaa tgattacaaa tcatctgact tgagaatgct tctgcttttt
     7381 atccgaaaaa aaggcgcgtt acgcgcctgg gaatgaaacg gacggggcag gagctgtcag
     7441 tcttttttac gcgagagtag cttcctggcg agcgccccga cagcgacgac gccgatggcg
     7501 gtcactttcc agaatttaag taacgcgata ccgagcatag caagcagtcc tactttcttg
     7561 gccgcgatac cgccaatcag cgcggcgagc tcatactccg ctattttgtc cgttgattcg
     7621 ttgaagtcag cgtagcgttg tccagcgttg aacttgacgg aactgagaat tcttttcgcc
     7681 agagggattt cgtggtcaac agaacctctg tcggtcacca gatttaaaga aaaataacct
     7741 tcacgtccca gcagataggt gttgtagttc acgccttgtt cattcagtgg ttcgttggtg
     7801 ccgatatcct ggatggcggc ggaccagatc agacgatgat tggttgcatc gtaggtaggc
     7861 ttctcgatcc agccaataat ttctatcggc tcaatgcctt ttgcaatacg atctttattc
     7921 gcttcttttg tgcctttgcg caggttatcc attaattcat cggcatccca gttttttgca
     7981 tcatcat
//
LOCUS       DAJVSD010000203         7967 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.203, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000203 DAJVSD010000000
VERSION     DAJVSD010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7967
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.203"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(416..1924)
                     /gene="putP"
                     /locus_tag="OQP62_003527"
     CDS             complement(416..1924)
                     /gene="putP"
                     /locus_tag="OQP62_003527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HCS1722972.1"
                     /translation="MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGP
                     FVTALSAGASDMSGWLLMGLPGAIFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTE
                     FNNNALTLPDYFTGRFEDKSRVLRIISALVILLFFTIYCASGIVAGARLFESTFGMSY
                     ETALWAGAAATIIYTFIGGFLAVSWTDTVQASLMIFALILTPVMVIVGVGGFSESLEV
                     IKQKSIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMT
                     WMILCLAGAVAVGFFGIAYFNNNPALAGAVNQNSERVFIELAQILFNPWIAGVLLSAI
                     LAAVMSTLSCQLLVCSSAITEDLYKAFLRKSASQQELVWVGRVMVLVVALIAIALAAN
                     PDNRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGAVTVIVWKQYGWL
                     DLYEIIPGFIFGSLGIVIFSLLGKAPTATMQERFAKADAHYHSAPPSKLQAE"
     gene            2346..6308
                     /gene="putA"
                     /locus_tag="OQP62_003528"
     CDS             2346..6308
                     /gene="putA"
                     /locus_tag="OQP62_003528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_447555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trifunctional transcriptional regulator/proline
                     dehydrogenase/L-glutamate gamma-semialdehyde
                     dehydrogenase"
                     /protein_id="HCS1722973.1"
                     /translation="MGTTTMGVKLDDATRERIKMAASRIDRTPHWLIKQAIFSYLDKL
                     ENSDTLPELPALFAGAANESEEPVAPQDEPHQPFLEFAEQILPQSVSRAAITAAWRRP
                     ETDAVSMLMEQARLSPPVAEQAHKLAYQLAEKLRNQKSASGRAGMVQGLLQEFSLSSQ
                     EGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGR
                     LVSTHNEANLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAQALANARKLE
                     EKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALH
                     PRYSRAQYDRVMEELYPRLKSLTLLARQYDIGLNIDAEEADRLEISLDLLEKLCFEPE
                     LAGWNGIGFVIQAYQKRCPLVIDYLVDLASRSRRRLMIRLVKGAYWDSEIKRAQMEGL
                     EGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYHLAGQNYYPGQY
                     EFQCLHGMGEPLYEQVTGKVGDGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSF
                     VNRIADATLPLDELVADPVEAVEKLAQQEGQAGIPHPKIPLPRDLYGEGRINSAGLDL
                     ANEHRLASLSSALLSNAMQKWQAKPVLEQPVADGEMTPVINPAEPKDIVGWGREATES
                     EVEQALQNAVNQAPVWFATPPQERAAILQRAAVLMEDQMQQLIGLLVREAGKTFSNAI
                     AEVREAVDFLHYYAGQVRDDFDNETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNS
                     VLAKPAEQTSLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTADARVRGVMFTGS
                     TEVATLLQRNIATRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAG
                     QRCSALRVLCLQDDIAEHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHI
                     QTMRAKGRPVFQAARENSDDAQEWQTGTFVMPTLIELENFAELEKEVFGPVLHVVRYN
                     RNQLAELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPF
                     GGEGLSGTGPKAGGPLYLYRLLAHRPPNALNTTLTRQDARYPVDAQLKTTLLAPLTAL
                     TQWAADRPALQTLCRQFADLAQAGTQRLLPGPTGERNTWTLLPRERVLCLADDEQDAL
                     TQLAAVLAVGSQALWSDDAFHRDLAKRLPAAVAARVQFAKAETLMAQPFDAVIFHGDS
                     DKLRTVCEAVAAREGAIVSVQGFARGESNMLLERLYIERSLSVNTAAAGGNASLMTIG
                     "
     gene            6367..6762
                     /locus_tag="OQP62_003529"
     CDS             6367..6762
                     /locus_tag="OQP62_003529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HCS1722974.1"
                     /translation="MKRIFLTCAALLFSSQALADECASASTQLEMNRCAAAQYQAADK
                     KLNETYQSAIKRAQPPQRELLQKAQVAWIALRDADCALIRSGTEGGSVQPMIASQCLT
                     DKTNEREAFLASLLQCEEGDLSCPLPPAG"
     gene            complement(6759..7397)
                     /gene="rutR"
                     /locus_tag="OQP62_003530"
     CDS             complement(6759..7397)
                     /gene="rutR"
                     /locus_tag="OQP62_003530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator RutR"
                     /protein_id="HCS1722975.1"
                     /translation="MSQRTEKKIGKRSQATGAKRQLILTAALAVFSQYGIHGARLEQV
                     AERAGVSKTNLLYYYPSKEALYVAVMRQILDVWLAPLKAFRAEFSPLEAIKEYIRLKL
                     EVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVHSGKLAPVSPH
                     HLIFMIWAATQHYADFAPQVEAVTGATLRDEAFFNQTVESVQRIIIEGIRVR"
     gene            complement(7534..7701)
                     /locus_tag="OQP62_003531"
     CDS             complement(7534..7701)
                     /locus_tag="OQP62_003531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006819399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein"
                     /protein_id="HCS1722976.1"
                     /translation="MANHRGGSGNFAEDRERASEAGRKSGQHSGGNFKNDPQRASEAG
                     KKGGKSSNRNR"
BASE COUNT         1898 a         2237 c         2140 g         1692 t
ORIGIN      
        1 ggtattaatg gtgaaaacac ccataaccca ttgaatattc aacatataaa agattaaaac
       61 ggagtaatta acgtgtcctc tctcccatcg ctaaaacggc attatttatg caaaattttg
      121 tgcggcatac ttacgccagt aacgctgact cgttttaatt tttgtcatta ctctattgcg
      181 tcaaggctat tggtaccatt aacaggcgat ttcatatatg gtcagttagt gattactcga
      241 gacgtattac ggccgcgtta acggcgctca agggctaaaa atagtttgag agagcgtcct
      301 catttacctg aacaccttca gtcaatcggt ccgggactta tcagaggacc aggcaggcgt
      361 ataacgccgc ctggtaaaat atatccgatg gcaataatgc tatcggacat gtcggttatt
      421 ccgcctgtag cttcgacggc ggcgcggaat gataatgcgc gtccgctttt gcaaagcgtt
      481 cctgcatcgt tgctgtcggc gctttgccaa gcaggctaaa gattacgatc cccaggctgc
      541 cgaaaatgaa gccagggata atctcataca gatccagcca gccatattgt ttccagacga
      601 taaccgtcac cgcgccaata atcattcccg ccagcgcgcc gttacgtgtc atacgcgacc
      661 acatcacaga aaacaggaca acaggtccaa atgccgcgcc gaatccagcc caggcgtagc
      721 tcaccagccc cagcacacgg ttatcaggat tcgccgccag cgcaatggcg atcagcgcta
      781 ccaccagcac catcactcgc cctacccata ccagctcttg ctggctggcg cttttacgca
      841 gaaaagcctt atataaatct tccgtaatcg cgctggagca taccagcaac tgacagctca
      901 acgtcgacat caccgccgcc aggatagcag acagcagaac accggcaatc cacgggttaa
      961 acaggatctg cgccagttca ataaatacgc gttctgagtt ttggttcacc gccccggcca
     1021 gcgcggggtt attgttaaag tacgcaatgc caaagaagcc caccgccacc gcgcccgcca
     1081 gacacagaat catccaggtc atactgatac gacgcgcatg aacaatactg tgatgggaat
     1141 ccgccgccat aaagcgcgcc aggatatgcg gctgaccgaa gtaacccagc ccccagccca
     1201 tcagagaaat aatagcgaca aaattcagcc ccttgagcat gtcgacattc tcgatgctct
     1261 tttgcttgat cacttccagc gactcgctaa aaccgcctac gccgacaata accatcaccg
     1321 gcgtcaggat taacgcaaaa atcatcaggc tggcctgaac ggtatccgtc cagctaacgg
     1381 caagaaaccc gccgataaag gtataaataa tggttgccgc ggcccccgcc cacagtgcgg
     1441 tttcatagct cataccgaag gtgctttcga acagtcgtgc cccagcgaca atacctgatg
     1501 cgcaatagat agtgaaaaac agcagaatga ccagcgcgga aataatacgc aggactcggc
     1561 tcttatcctc aaaccgaccg gtaaaatagt ccggcagcgt gagcgcgtta ttgttaaatt
     1621 cggtatgcac gcgcaggcgc ccggccacca gcttccagtt aatccatgcg cctaacgtca
     1681 ggccaatggc gatccagctt tcagagatcc ccgacagaaa gatagcgcca ggcagcccca
     1741 ttaacagcca gccgctcata tccgacgcgc cggctgataa agccgtaaca aacggcccca
     1801 ggctgcgacc gccaagaata tagtcatcaa agtttttggt tgagcgccag gcgataaacc
     1861 caatcaatat catgccaaaa atatagacac agaatgtcac caacatcggt gtgctaatag
     1921 ccatcaaggt tctccaaatt tatttattgg cactaccgta gcgtgccgtt ttgtaccctg
     1981 ccggaacgtg gcaagggtgt tatgtttacc agggcgaccg tatcctgccg gaatcggtgg
     2041 ttattcacaa tcgatttaac acaccattta catcaaattt gattgcagag ggatactatt
     2101 tttctccagg ttgcactctc tcacattttt tgcggttgca ccttttaaaa gtgttaacta
     2161 ccgcagagaa aataaatcca gatggttttc cccgtcagac tcccactttc tttttttaac
     2221 aatttattca tttttaagct tgcaacgcag gtcacattta acgcggttgc acaaagttgc
     2281 aatatagtgg atattttccg ctaactattg gttagcagat agagcgaata acaggagtag
     2341 agggtatggg aaccaccacg atgggggtta agctggacga cgccacgcgc gaacggatca
     2401 aaatggccgc gtcgcgtatc gatcgcacgc cgcactggtt aataaaacag gcaatcttta
     2461 gctatctgga caagctggaa aatagcgata cgctaccgga gctacctgcg ctgtttgccg
     2521 gcgcggcaaa tgaaagcgag gagccggtcg cgccgcagga tgagccgcat cagccctttc
     2581 tggagtttgc cgaacagatt cttccccaat ccgtctctcg cgccgccatc accgccgcct
     2641 ggcgccgccc ggaaaccgat gcggtgtcaa tgctaatgga acaggcgcgc ctgtcgccgc
     2701 ctgtcgctga gcaggcgcat aaactggcgt atcaactggc ggagaaattg cgcaatcaaa
     2761 aatccgccag cggtcgcgcg ggtatggtgc aaggcctgtt gcaggagttt tccctctctt
     2821 cgcaagaagg cgtagcgctg atgtgtctgg cggaagcgct gctgcgtatt cccgacaaag
     2881 ctacgcgcga tgcgttaatt cgcgacaaaa tcagtaatgg caactggcag tcgcatattg
     2941 gccgtagccc gtcgctgttt gtaaacgccg ccacctgggg gctgctcttt accggccgac
     3001 tggtctcaac gcataacgaa gccaatcttt cgcgctcgct gaaccgcatt atcggcaaga
     3061 gcggcgaacc gttaatccgc aaaggcgtcg acatggcgat gcgtttaatg ggcgagcagt
     3121 tcgtgactgg cgaaaccatt gctcaggcgc tggcgaatgc ccgaaaactg gaagagaaag
     3181 ggttccgcta ttcttacgat atgctgggcg aagccgcgtt aaccgccgcc gatgcgcagg
     3241 cctatatggt ctcttaccag caagcgattc atgccatcgg caaagcgtct aacggtcgcg
     3301 gtatttacga agggccaggc atctcgatta agctgtccgc cctgcatcca cgctatagtc
     3361 gcgcgcaata cgatcgggta atggaggagc tttatccgcg cctgaaatcc ctgacgctgc
     3421 tggcgcgcca gtatgatatc ggtctcaata tcgacgccga agaggcggat cgtctggaga
     3481 tctcgcttga tctgctggaa aaactctgct tcgaacccga actggcgggc tggaacggca
     3541 ttggctttgt gattcaggct taccagaaac gctgcccgct ggtcattgat tatttagtcg
     3601 atctggcctc ccgtagccgc cgtcggctga tgattcgtct ggtgaaaggc gcctactggg
     3661 atagcgagat caaacgcgcg caaatggaag ggctggaggg ctatccagtt tatacccgca
     3721 aagtgtatac cgatgtctct tatctggcct gcgcgaaaaa actgctcgcc gtccctaatc
     3781 tgatctaccc gcagttcgcg acccataacg ctcacacact ggcggcgatt tatcatctgg
     3841 ccgggcaaaa ttactatccg ggtcagtacg aattccagtg cctgcacggc atgggagaac
     3901 cgctgtatga acaggtcacc ggtaaagtgg gggacggaaa acttaaccgt ccctgccgta
     3961 tttacgcgcc ggtgggaaca cacgaaaccc tgctggccta tctggtacga cgcctgctgg
     4021 aaaacggcgc caacacctct tttgtcaacc gcatcgccga tgccacccta ccgctcgatg
     4081 aactggtggc cgacccggtc gaggccgtgg aaaaactggc gcagcaggaa ggtcaggctg
     4141 gcataccgca tccaaaaatt ccgctgccgc gcgatctgta cggcgaaggt cggataaact
     4201 ccgccggact tgatttagcg aatgaacatc gcctcgcctc gctttcttct gccctgttaa
     4261 gcaacgccat gcagaaatgg caggccaaac ctgtgctgga acaaccggtg gccgacggtg
     4321 agatgacgcc ggttatcaac ccggcggaac cgaaagatat tgttggctgg ggacgcgaag
     4381 cgacagaaag cgaggttgaa caggcgttgc aaaacgcggt caatcaggcg ccggtttggt
     4441 ttgcgacgcc gccgcaagaa cgcgccgcta ttttgcagcg ggcggcggta ttgatggaag
     4501 accaaatgca gcagttgatt ggcctgttgg tgcgtgaagc ggggaaaacg ttcagcaacg
     4561 ccattgccga agtgcgcgaa gcggtagact tcctccatta ttatgccggt caagtgcgtg
     4621 acgatttcga taacgaaacg catcgcccgt tagggccggt ggtctgtatc agtccgtgga
     4681 actttccgct ggccattttc actggccaaa tcgccgccgc gctggcggca ggtaacagcg
     4741 ttctggcgaa accggcagag cagacatcgc tgattgccgc ccagggcatt gccattttgc
     4801 tggaagcggg cgtaccgccg ggcgtcgtgc aactgttgcc gggacgggga gaaaccgtcg
     4861 gcgcccagct taccgccgat gcgcgtgtac gcggcgtgat gtttaccggt tccacggagg
     4921 tcgcgacgtt gttgcagcgc aacatcgcca cgcgtcttga cgcccagggg cgccctattc
     4981 cgttgattgc ggaaaccggc ggtatgaacg ctatgattgt cgactcttcc gcgctcaccg
     5041 agcaggtggt cgtggatgtg ctggcttccg ccttcgacag cgccggacaa cgctgttccg
     5101 cgctccgcgt gctgtgtttg caggacgata tcgccgaaca tacgctgaaa atgttacgcg
     5161 gcgcgatggc ggagtgtcgg atggggaatc caggccgtct gacgaccgat atcgggccgg
     5221 tgatcgatag cgaggccaaa gccaacattg aacgtcatat ccagacgatg cgcgccaaag
     5281 gccgcccggt tttccaggcc gcgcgtgaaa acagcgatga cgcgcaggaa tggcagaccg
     5341 gtacgtttgt tatgcccacg cttattgagc tggaaaactt cgcagaactg gaaaaagagg
     5401 tcttcgggcc cgtgctgcac gtcgtgcgtt ataaccgtaa ccaactggcg gagcttatcg
     5461 aacagattaa cgcttccggc tacgggctaa cgctgggcgt acatacccgt attgatgaaa
     5521 ccattgcgca agtcaccggt tccgcccatg tcggcaacct gtacgttaac cgtaatatgg
     5581 tgggcgcggt cgtcggcgtc cagccgtttg gcggcgaagg cctgtccggc accgggccaa
     5641 aagcgggagg gccgctctat ctctaccgcc tgctggcaca ccgcccgccc aatgcgctca
     5701 atacgacgct gactcgtcag gatgcgcgtt acccggtgga tgcgcagctt aaaaccacgc
     5761 tactcgcgcc gttgaccgct ctgacgcaat gggcggcgga tcgcccggcg ctacagacgc
     5821 tctgccgaca attcgccgat ctggcgcagg ccggcacgca gcgcctgcta ccggggccga
     5881 ccggcgagcg taatacctgg acgctgttgc cgcgtgaacg ggtgttatgc ctggctgatg
     5941 atgaacagga cgcgttgacg cagcttgccg ccgttctcgc cgtcggcagt caggcgctat
     6001 ggtcagacga cgccttccac cgcgatctgg cgaaacgtct ccccgccgcc gtcgcggcgc
     6061 gtgtccagtt tgcgaaagcg gaaacgctga tggcgcagcc gtttgacgcg gtgattttcc
     6121 acggcgactc cgacaagctg cgaaccgtgt gcgaagccgt cgccgcccgc gaaggcgcga
     6181 tagtgtcggt acaggggttc gcccgcggcg aaagcaatat gctgctggaa cggctctata
     6241 ttgaacgttc gctgagcgta aacactgccg ccgctggcgg taatgccagc ctgatgacaa
     6301 ttggctaata ctgtggttaa ttaaggctcc gtcaatggag cctttttact cgcgtcagag
     6361 gaccgtatga aacgaatttt ccttacctgc gcggcgttgt tgttcagcag tcaggcgttg
     6421 gccgatgagt gtgccagcgc cagtacgcag ctggaaatga atcgctgcgc cgccgcgcaa
     6481 taccaggcgg cagataaaaa gctgaacgaa acctatcaaa gcgcgattaa gcgtgcgcaa
     6541 ccgccgcagc gtgagctatt gcaaaaagcg caggtggcat ggattgccct gcgcgacgcc
     6601 gattgcgcgc tgattcgctc aggtacggag ggcggcagcg ttcaacccat gatcgccagc
     6661 cagtgcctga ccgataaaac gaacgaacgc gaagcgtttt tagcctcgct gctgcaatgt
     6721 gaagagggtg atttgagctg cccactgccg ccagccggtt aacgcacgcg aatcccttca
     6781 ataataatgc gctgaacgct ttcgaccgtt tggttgaaaa aggcttcatc gcgaagcgtc
     6841 gcgccggtta ccgcttcaac ctgaggggcg aaatcggcgt aatgttgcgt ggcggcccaa
     6901 atcatgaaga tcaaatgatg cggagaaacg ggcgcgagtt tcccgctgtg cacccatccg
     6961 gcaatcagcg cggatttttc atctatcaac gcttttagat cgccggtcag ttcatccatt
     7021 aagagcggcg cgcccgccag catctccatg cagaagagcc gcgacgcctg cggataatca
     7081 cgcgaaacct ccagcttgag acggatatac tctttgatgg cctccagagg ggaaaattct
     7141 gcgcgaaacg ccttgagcgg cgccaaccag acatccagaa tctgtcgcat taccgcgaca
     7201 tacagcgcct ctttcgaggg ataataataa agcagattgg ttttggagac gcctgcccgc
     7261 tcggcgacct gttcaagacg cgcgccatga atgccatact gggaaaaaac ggcaagcgcg
     7321 gcggttaaga taagctgccg ttttgcaccg gtggcctgcg aacgtttccc gatttttttc
     7381 tctgtgcgtt gcgacatgcg ccctctcctt ttcgtcagga cgcaagcata ccaaatccgg
     7441 cttataaaca aaaaaaccgc cggaaatccg gcggcggtgg cgcatgacgc tttttagcgc
     7501 gaaacgctca gcgtcttgct gttgtgacgc aggctagcga ttacggttac tgcttttgcc
     7561 cccttttttg cctgcttcgg atgcacgctg cgggtcattc ttaaaattgc ccccgctgtg
     7621 ctgaccactt ttacgacctg cttctgatgc tctttcgcgg tcttccgcaa aattaccgga
     7681 accgccacga tggtttgcca ttactgacct ccgtcataga ttagacatca tattgcatag
     7741 gtaatgagga gtatctcctc gcgccgcgta tgaacgatat catcagtaac gccgcgtaaa
     7801 attaagcata gtgaaaaacg ccgtggtagg ccgcttaccg aaatattctg caacatcaga
     7861 agccgaatat gcagaataat aaccatgaga aataaataag ttattcttat acttggaaaa
     7921 atcaaagcgc ttaaaaatgt atcattttgc aacaaaggtc gccaaat
//
LOCUS       DAJVSD010000204         7935 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.204, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000204 DAJVSD010000000
VERSION     DAJVSD010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7935)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7935)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7935
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.204"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(14..1594)
                     /locus_tag="OQP62_003532"
     CDS             complement(14..1594)
                     /locus_tag="OQP62_003532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HCS1722977.1"
                     /translation="MNSTLIDSLLARRRAVSPWAGLYFLQSLLINLALGYPFSLLYTA
                     AFTCLLLLLWRYLPRGQKALLGICSLVAACYFPFGQAYGAPNFNTLLALHSTNMEESS
                     EILTIFPWYSYLTGLFIFALGIIALRRRKEEVRPRWNSLDSLCLLISVAAFFVAPVQN
                     LAWGGVFKVIDTGYPVFRFAKDVIVNNNEVIEEQHRMAQLSGIKDSWTVTAVKPRYHI
                     YVVVIGESARRDAMGAFGGHWDNTPFASHVNGDFFMDYIAASGSTQKSLGLTLNRVVD
                     NKPQYQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEAHFLKNGDFEADK
                     NTRDDALLTMTAQVLATERTQPQLIVLHLMGSHPQACDRTHGKYATFVQSKETSCYLY
                     TMTQTDDLLRQLYTQLRHSGDSFSLVYFSDHRLAFKERGKAVQYLAHDDKFQQNFQVP
                     FMVLSSDSKAHRIIKARRSANDFLSFFSQWTGISAKEIKNRYRFISEQKAGPVYITNF
                     KLQKVDYNHLGSDIFSLK"
     gene            complement(1860..1988)
                     /gene="mntS"
                     /locus_tag="OQP62_003533"
     CDS             complement(1860..1988)
                     /gene="mntS"
                     /locus_tag="OQP62_003533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganase accumulation protein MntS"
                     /protein_id="HCS1722978.1"
                     /translation="MNEFKRCIRVFSHSPFKVRLMLLSMLCDMINGKPEQDNPSTK"
     gene            2174..2647
                     /gene="mntR"
                     /locus_tag="OQP62_003534"
     CDS             2174..2647
                     /gene="mntR"
                     /locus_tag="OQP62_003534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese-binding transcriptional regulator
                     MntR"
                     /protein_id="HCS1722979.1"
                     /translation="MGRRAGTPTTKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVEL
                     ISDLIIEVGEARQVDMAARLGVSQPTVAKMLKRLASLGFIQMIPWRGVFLTPEGEKLA
                     QESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSQETLDAFLAFTQQHGTSAE"
     gene            2644..3756
                     /locus_tag="OQP62_003535"
     CDS             2644..3756
                     /locus_tag="OQP62_003535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion transporter"
                     /protein_id="HCS1722980.1"
                     /translation="MNLAFLRALRRDRFFQLLIIVGMALSLFVPFAPRAWPGAIDWHT
                     IITLSGLMLLTKGVELSGYFDVLGRKMTRRFHTERQLAMFLVLAAAALSTFLTNDVAL
                     FIVVPLTITLKKLCAIPVNRLIIFEALAVNAGSLLTPVGNPQNILLWGRSGLSFAEFS
                     GQMAPLAVMMMLTLLLLCWFCFPGRALQYHTGTRSPQWQPRLVWSCLALYVVFLTALE
                     LRQELWGLVLVAAGFIVLARRVIVSVDWTLLLVFMAMFIDVHLLTQLPALQGVFNQVG
                     ALSHLGLWLTAIGLSQVISNVPSTILLLNYVPASTLLAWAVNIGGFGLLPGSLANLIA
                     LRMANDRRIWWRFHFYSLPMLAWAALVGYGLLQLMP"
     gene            complement(3800..4720)
                     /gene="ldtB"
                     /locus_tag="OQP62_003536"
     CDS             complement(3800..4720)
                     /gene="ldtB"
                     /locus_tag="OQP62_003536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HCS1722981.1"
                     /translation="MNMKLTTLFAAAFAVVGFCKTASAVTYPLPTDGSRLIGQNQVIT
                     VPEGNTQPLEYFAAEYQMGLSNMLEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGII
                     INSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE
                     YRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNDDI
                     KFLFENVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGKEAVPITLNKS
                     ILAVTNEPDVDQTVVQQAVQDRSGMPVRLN"
     gene            4940..6535
                     /locus_tag="OQP62_003537"
     CDS             4940..6535
                     /locus_tag="OQP62_003537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000961428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATPase"
                     /protein_id="HCS1722982.1"
                     /translation="MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFM
                     KILGGDLEPTLGNVSLDPNERIGKLRQDQFAFETFTVLDTVIMGHGELWEVKQERDRI
                     YALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPLEQHYGLMSEVAPGW
                     KLRVLLAQALFSNPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMV
                     CTHMADLDYGDLRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANA
                     SKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEALTKGFDNGPL
                     FKNVNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLDADHGTVKWSENARIGYYAQDHE
                     YEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFG
                     KLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRVIEI
                     TPERVVDFSGNYDDYLRSKGIES"
     gene            complement(6657..7922)
                     /locus_tag="OQP62_003538"
     CDS             complement(6657..7922)
                     /locus_tag="OQP62_003538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1479 domain-containing protein"
                     /protein_id="HCS1722983.1"
                     /translation="MTTPFTYETLPADPKAAIRQMKQALRAQIGDVQAVFDRLSATIA
                     ARVAEINDLKAQGQPVWPIIPFSELATGNISDATRAEVKRRGCAVIKGHFPREQALAW
                     DQSMLDYLDKNHFDEVYKGPGDNFFGTLSASRPEIYPVYWSQAQMQARQSEEMALAQS
                     FLNRLWQVERDGKRWFNPDISIIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQ
                     QVFASVFNGNVEQYDPWNAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLL
                     HVVPIPEAMAYILLRPLLDDVPEDELCGVAPGRVLPISEQWHPLLMAALTSIPPLEAG
                     DSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYARKVKAALETGASPDDFP
                     REDYETTWEGRFTLRDLNIHGKRALGMDV"
BASE COUNT         1804 a         1990 c         2253 g         1888 t
ORIGIN      
        1 cctgaaacgt gcattatttt agtgaaaaaa tatcgctgcc cagatggtta tagtccactt
       61 tctgtaattt gaaattggtg atataaacgg gcccggcttt ctgttccgaa ataaatcgat
      121 agcgattttt gatctcttta gcgctaattc ctgtccattg cgagaaaaaa ctcaggaaat
      181 cgttcgcgga acggcgagct ttaatgatcc gatgcgcttt actgtcgctg gatagcacca
      241 taaacggcac ctggaagttt tgctggaatt tgtcgtcatg cgccaggtac tgtaccgctt
      301 tgccgcgctc tttaaacgcc agcctgtgat cggagaaata gacgagcgaa aaactgtcgc
      361 cgctatgacg aagctgagta tagagctgac ggagcaaatc gtcggtttgc gtcatggtgt
      421 ataaataaca agacgtctct ttcgactgga caaacgtcgc gtattttcca tgagtacggt
      481 cgcaggcctg gggatgcgat cccattaaat gcaacacaat caactgcggt tgcgtgcgtt
      541 ctgtcgccaa tacctgcgcc gtcatggtta acagcgcgtc gtcgcgagta tttttatccg
      601 cttcaaaatc gccgtttttc aggaaatgcg cttcatcggc gcgtttggcg atactggcga
      661 tggccgtgtc gtattcgccg atttgcccct gattggaaaa ccaccatgtc tgaaaaccgg
      721 cgcggttagc cagcgtgacg aagttatcct gatactgcgg tttgttatcc accacgcgat
      781 tgagcgttaa accgagcgat ttttgcgttg agccgctggc ggcgatgtaa tccataaaga
      841 agtcgccatt cacatggctg gcgaaggggg tattatccca gtggccgccg aaagcgccca
      901 tggcatcccg tcgcgcgctt tcaccaatca ccacgacata gatgtgatat ctgggtttca
      961 ccgcagtaac cgtccagcta tcttttatgc cggatagctg cgccatacgg tgctgctctt
     1021 caatgacttc gttgttattg acgataacgt ctttggcgaa gcgaaaaacc ggatagccgg
     1081 tatcaataac cttaaaaacg ccgccccagg ccagattttg taccggcgcg acgaaaaatg
     1141 ccgcgacgct aatcagcagg cacaggctgt cgaggctatt ccagcgcggc ctgacctctt
     1201 cttttcggcg gcgaagcgca ataataccca gcgcaaaaat aaaaagtccg gtcaggtagc
     1261 tataccacgg gaagatggtc aggatttcgc tcgactcttc catattggtg gagtgcagcg
     1321 ccagcagcgt attaaagttc ggcgcgccgt aagcctggcc aaagggaaaa tagcaagcgg
     1381 ctaccagcga acagatgccg agcagcgctt tttgtccgcg aggcaggtag cgccagagca
     1441 gcagcaacag gcaggtaaac gccgcggtat aaagcaggct aaaggggtag ccgagcgcga
     1501 ggttaatcag cagcgactgt aaaaagtaga ggcccgccca tgggcttaca gcccgacgac
     1561 gggccagaag tgaatcgata agggttgaat tcatatgcca ctattgcaaa aacgccatgt
     1621 gctaaccctg gcgcgaaggg tcattacctg cctgattatg cgtaaaaaag gtattgggtt
     1681 cgcaacggcg agtcgcaaaa tattcaaggc tgccagaaga tagagcgtgc gggtaagaag
     1741 gccaaccgcc ggaaagaaaa tgttttgcga agagaatagc aaaaccacaa aaaaaacagg
     1801 ggaaatgggc gccatttccg ttgaggatgc aaaataaagc ggcgtaccgc accgccgcgt
     1861 tatttcgtgg aagggttatc ctgttccggt ttgccgttga tcatatcgca caacatagag
     1921 agcagcatta accggacttt aaagggagag tgactgaaca cgcgtataca cctcttaaat
     1981 tcgttcatat aaacctcctg atgtttctat cccatcgatc cgtgagggat gtctgcatta
     2041 catacagata tagcacaggc tatgttttat agctattgct aaaacgttaa ttttttgtgc
     2101 ccggacaact ctggtttaca atgagcgctc tgtcagctga cgcgttaacg cgtcacagaa
     2161 acgaggaagc aaaatgggtc gtcgcgcagg tacgccaaca acaaaaaaag tgacgcaatt
     2221 ggtgaacgta gaagaacacg ttgaaggatt tcgtcaggtc agagaggcgc atcggcgtga
     2281 gttgatagac gactacgttg agctgatttc cgatttaatt attgaggtag gggaagcgcg
     2341 tcaggtggat atggcggcgc ggctcggcgt ctcccagccg actgtggcca aaatgcttaa
     2401 gcgcctggca tcgttaggat ttattcaaat gatcccctgg cgcggcgttt ttctgacgcc
     2461 ggaaggggag aagctggcgc aggaaagccg cgagcggcat caaattgtcg aaaatttttt
     2521 actggtatta ggcgtaagcc cggaaatcgc gcgtcgtgat gcggaaggga tggaacacca
     2581 tgtcagccaa gagacattag atgccttttt ggccttcacg caacagcatg gaacatctgc
     2641 agaatgaatc tggccttttt acgggcgctg cggcgtgacc gtttttttca gttgttgatc
     2701 attgtgggga tggcgttaag cctgtttgtt ccttttgcgc cccgcgcctg gcctggcgcg
     2761 attgactggc acaccattat taccctcagt gggttaatgt tgctcactaa aggcgttgag
     2821 ctgagcggct attttgatgt gctgggacgc aagatgacgc gccgatttca taccgagcgg
     2881 caactggcga tgttcctggt gctggctgcg gcggcgctgt cgacctttct gacaaacgat
     2941 gtcgcgctgt ttatcgttgt gccgctgacg ataacgttaa aaaaactgtg cgcgattccg
     3001 gtcaaccgat tgattatttt tgaagcgtta gcggtgaacg ccggttcgct gctgacgcct
     3061 gtcggtaatc cgcaaaatat tctgttgtgg ggacgctccg gcttaagctt tgctgaattt
     3121 agcgggcaaa tggcgccgct tgccgtcatg atgatgctga cgttactgct cctgtgctgg
     3181 ttttgttttc cgggtagggc gttacagtat cataccggta cgcgttcgcc gcagtggcag
     3241 ccccgtctgg tgtggagttg cctggcatta tatgtcgttt ttcttaccgc gctggagctc
     3301 aggcaagagt tatggggact ggtgttggtg gcggctgggt ttattgtgct ggcgcgcagg
     3361 gtgatagtca gcgtggactg gacgctgctg ctggtattta tggcgatgtt tattgatgtc
     3421 catctgctaa cgcaattgcc ggcgttgcag ggcgttttca accaagttgg cgcactgtct
     3481 cacctgggac tttggctaac cgctatcggc ctgtcgcagg ttatcagtaa tgtgcccagt
     3541 accattctcc tgctgaacta tgtaccggcc tcgacgttgc tggcgtgggc ggtgaatatc
     3601 ggcgggtttg gtctgctgcc ggggtcgctg gcaaatctta ttgctttacg gatggcgaac
     3661 gatcgccgaa tctggtggcg atttcatttc tattcgctgc cgatgctggc atgggcggcg
     3721 ctggtgggat atggattatt gcaactgatg ccgtaagaga agcccgatag tgtctatcgg
     3781 gcttcgcagg cagagtctgt cagttcagac gaaccggcat cccggaacga tcctgaactg
     3841 cctgttgtac gacggtctga tcaacgtcag gctcgttggt gacggccagg atactcttat
     3901 taagcgtgat cggcaccgct tccttacctt caaactgcgc ttccgtcgtt gacagcgggt
     3961 tatgcacctc aatgtaacgg ctaccgtccg gctcggtggt ggcttttacc ggttcatcga
     4021 taaactgcac gcgggtaccg accggcacat tttcaaacag gaatttgata tcgtcgttgc
     4081 gcagacgtac gcagccgtgg ctcacgcgaa gcccgatgcc gaagttggcg ttggtgccgt
     4141 gaatagcata caggcgaccg atgtacagcg cgtacaggcc catcgggtta tccgggcccg
     4201 caggcacgac ggcaggcagc ggctcgccgg cggcgcgata ttcagcgtgc atttttgccg
     4261 taggcgtcca ggtcggaccg gcttttttac gttcaacttt ggtcgtccag ttgataggcg
     4321 tgtctttacc taactgaccg atcccaatcg gcaggacgat aacggtgttt gtgcctttcg
     4381 ggtagtaata gaggcgcatt tccgcgctat tgatgataat gccttcgtgt acggtatccg
     4441 gcaggatcag ctgctgcgga atattcagca cggtaccgcc cttcggcagg aaggtatcca
     4501 cgccagggtt ggcttccagc atgttggaga gccccatctg atactccgcg gcaaaatact
     4561 ccagcggctg ggtattgccc tccggaacgg tgatgacctg attttgccca attaaacggc
     4621 taccatcggt aggcagcggg taagtgactg ctgaggctgt tttacaaaaa ccaactacag
     4681 cgaaagccgc cgcgaaaagc gttgttaatt tcatattcat gttatgcgag attctgtgcc
     4741 aagcaggcta gtaggttgag aattctgtca tgttgggagc gcattatagg tgcattccag
     4801 taaacaggga attcagatgt gtacgaaatc acgttttttt ccccttacgg ttcagtgtag
     4861 ccctttgtat agggcgcgat cttatttcag acttgtggca taataagcgg tttgtcacat
     4921 cttttttcag gataagcctg tgttagtttc cagcaacgtt accatgcagt tcggcagtaa
     4981 gccgctgttc gaaaatattt ccgtcaaatt tggcggcggc aaccgttacg gcctgatcgg
     5041 cgccaacggt agcggaaagt ccacttttat gaaaatcctc ggcggcgacc tggagccgac
     5101 gctgggcaat gtttccctcg atccgaatga gcgcatcggt aagctgcgtc aggaccagtt
     5161 cgcttttgaa acattcaccg tacttgatac tgtcattatg gggcatggcg aactgtggga
     5221 agtcaagcag gagcgcgacc gtatctatgc cttgccggaa atgagcgaag aagacggcta
     5281 taaagtcgcc gatctggaag taaaatacgg cgagatggac ggttattccg ctgaggcgcg
     5341 tgcgggcgaa ctgctgttgg gggtgggcat cccgctggag cagcattacg gtctgatgag
     5401 tgaagtcgcg ccaggctgga aattgcgtgt gctactggcg caggcgttat tctctaatcc
     5461 ggacatcctg ttgctcgacg aaccgaccaa caacctggat attgatacta tccgttggct
     5521 ggagcaggtg ctgaacgagc gcgatagcac gatgatcatc atttcgcacg accgtcactt
     5581 cctgaacatg gtttgtacgc atatggcgga tctggattac ggtgacttgc gcgtctatcc
     5641 gggtaactat gatgagtata tgacggcggc gacccaggcg cgtgaacgtc tgttggccga
     5701 taatgcgaag aaaaaagcgc aaattgccga gctgcaatct tttgttagcc gttttagcgc
     5761 caatgcctct aaatcgcgtc aggcaacgtc gcgcgcgcgg cagattgata aaatcaagct
     5821 ggaagaggtg aaagcctcca gccgtcagaa cccgttcatc cgttttgagc aggataaaaa
     5881 actgttccgt aacgctctgg aagtggaggc gctgacgaaa ggttttgata acggtccgct
     5941 gtttaaaaat gtcaatttgc tgctcgaagt cggcgagaag ctggcggtac tcggcaccaa
     6001 tggcgtgggt aaatctacgc tgctgaagac gctggttggc gatctggacg ccgatcacgg
     6061 caccgttaaa tggtcggaaa acgcgcgtat tggttactac gcgcaggacc acgaatatga
     6121 attcgaaaat gacctgacgg tgtttgaatg gatgagtcag tggaaacagg aaggcgacga
     6181 cgagcaggca gtgcgcagta ttctgggccg cctgttattt agccaggatg atatcaaaaa
     6241 gcctgcgaaa gtcctctccg gtggcgagaa gggccgtatg ctgttcggca aactgatgat
     6301 gcaaaagccg aatatcctga tcatggacga accgactaac cacctggata tggagtcgat
     6361 cgaatcgctg aatatggcgc tggagctgta tcagggcacg ctgatctttg tttcgcacga
     6421 ccgtgagttc gtcagctcgc tggcaacccg cgtcattgaa attacgccgg agcgcgtggt
     6481 ggacttcagc ggtaactacg acgattattt gcgtagtaaa gggattgaaa gctaaacact
     6541 gacgcccggt ggcgctgtgc ttaccgggcc tacgtatcct ggcgcgtaga tctggtaaga
     6601 cgggtgcgcc cagacaaagg gcacaccgca gttgagcggg cagggctgta cgaccgtcaa
     6661 acgtccatac ctaatgcccg cttgccgtga atattcagat cgcgcagcgt gaaacgccct
     6721 tcccaggtgg tttcatagtc ctcgcgcggg aaatcgtccg gtgatgcgcc tgtctccagc
     6781 gccgctttca ccttacgcgc ataggccaga tttttctcac acattggcgc ggcaggaatg
     6841 tacatcacat tgccccagcc ctgctgattt tcgacggggg cgacggagtg gatgacatcg
     6901 caatgccacc acacggaatc cccggcttcc agcggcggaa tgctggttaa cgccgccatc
     6961 agtaaaggat gccactgttc agaaatcggc agcacccggc ccggcgcgac gccgcataat
     7021 tcatcttccg ggacatcatc cagcagcggg cgcagcagaa tatacgccat cgcctccgga
     7081 atagggacga catgaagcaa cccctgaccg ggcagcatat cggagagcgc ggtccagccc
     7141 tggaaggtgc gaaataccga gcattttgtg gtgttatcca ccgtgtactc ttcaacttcg
     7201 gtacggtgcg ccgcattcca cggatcgtac tgctcgacgt tgccgttaaa cacgctggcg
     7261 aatacctgct gataggctgg tagcagccag cgctccagcg cgccggagtc ggtatgcgct
     7321 cccagtcctt tggatgtggt gcccggcggg cggcgacgga tgcgatccgg gtaaatgatg
     7381 ctgatatccg gattaaacca tcgcttgccg tcgcgctcta cctgccacag acggttgagg
     7441 aacgactgcg ccagcgccat ctcttcactt tggcgggcct gcatttgcgc ctgcgaccag
     7501 tagacaggat agatttcagg ccgggaggcg ctcagcgtac cgaaaaaatt atcccccggt
     7561 cctttataca cctcgtcaaa atggttcttg tccagatagt cgagcatcga ctggtcccat
     7621 gccagcgcct gttcgcgtgg aaaatgacct ttaatcaccg cgcacccgcg gcgcttaacc
     7681 tcggcgcggg tagcatcgct aatgttgccc gtcgccagtt cgctaaaagg gataattggc
     7741 cataccggct gtccctgcgc cttcagatcg ttaatttccg ccacccgggc tgctatggtg
     7801 gcgctcaaac ggtcgaacac cgcctgtacg tcgccgattt gcgcgcgtag cgcctgcttc
     7861 atctgacgaa tggccgcttt tgggtcggcg ggcagcgttt cgtaggtaaa aggagtcgtc
     7921 atatcaacct cacca
//
LOCUS       DAJVSD010000205         7851 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.205, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000205 DAJVSD010000000
VERSION     DAJVSD010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7851
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.205"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            36..455
                     /gene="trxC"
                     /locus_tag="OQP62_003539"
     CDS             36..455
                     /gene="trxC"
                     /locus_tag="OQP62_003539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxC"
                     /protein_id="HCS1722984.1"
                     /translation="MNTVCTHCQAINRIPGDRLQDAAKCGRCGHELFDGEVINATGET
                     LDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAEERSGKVRFVKVNTEAERELSARF
                     GIRSIPMIMIFKHGQVVDMLNGAVPKAPFDSWLNEAL"
     gene            528..1208
                     /gene="tapT"
                     /locus_tag="OQP62_003540"
                     /gene_synonym="tuaA"
                     /gene_synonym="yfiP"
     CDS             528..1208
                     /gene="tapT"
                     /locus_tag="OQP62_003540"
                     /gene_synonym="tuaA"
                     /gene_synonym="yfiP"
                     /EC_number="2.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-uridine aminocarboxypropyltransferase"
                     /protein_id="HCS1722985.1"
                     /translation="MTNNAVLQLRAERLARATRPFLARGNRVRRCQRCLLPLKSCLCD
                     TLTPSQAKSRFCLVMFDTEPMKPSNTGRLIADILPDTAAFQWSRTEPPQALLELVQHP
                     DYQPIVVFPASYAGEAREVISTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDHLPVIS
                     VDLSRLSAYRLREIHAEGQYCTAEVAIALLDLAGDPEAATSLGEHFIRFKTRYLAGKT
                     QHPGNVTA"
     gene            1262..3922
                     /gene="pat"
                     /locus_tag="OQP62_003541"
     CDS             1262..3922
                     /gene="pat"
                     /locus_tag="OQP62_003541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein lysine acetyltransferase"
                     /protein_id="HCS1722986.1"
                     /translation="MSQQGLEALLRPKSIAVIGASMKPHRAGYLMMRNLLAGGFNGPV
                     LPVTPAWKAVLGVMAWPDIASLPFTPDLAILCTNASRNLALLDALGAKGCKTCIILSA
                     PTSQHEELLASARHYKMRLLGPNSLGLLAPWQGLNASFSPVPIKQGKLAFISQSAAVS
                     NTILDWAQQREMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFV
                     SAARSASRNKPILVIKSGRSPAAQRLLNTSAGMDPAWDAAIQRAGLLRVQDTHELFSA
                     VETLSHMRPLHGDRLMIISNGAAPAALALDELWSRNGKLATLSEETCLQLRQTLPAHI
                     DIANPLDLCDDASSEHYVKTLDILLASQDFDALMVIHSPSAAAPGTESAHALIETIKR
                     HPRGKFVTLLTNWCGEFSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQLR
                     ETPALPSNLTSNTAEAHNLLQRAIAEGATSLDTHEVQPILHAYGLHTLPTWIASDSAE
                     AVHIAEQIGYPVALKLRSPDIPHKSEVQGVMLYLRTASEVQQAANAIFDRVKMAWPQA
                     RIHGLLVQSMANRAGAQELRVVVEHDPVFGPLIMLGEGGVEWRPEEQAVVALPPLNMN
                     LARYLVIQGIKQRKIRARSALRPLDIVGLSQLLVQVSNLIVDCPEIQRLDIHPLLASA
                     SEFTALDVTLDIAPFDGDNESRLAVRPYPHQLEEWVEMKNGDRCLFRPILPEDEPQLR
                     QFIAQVTKEDLYYRYFSEINEFTHEDLANMTQIDYDREMAFVAVRRMDNAEEILGVTR
                     AISDPDNVDAEFAVLVRSDLKGLGLGRRLMEKLIAYTRDHGLKRLNGITMPNNRGMVA
                     LARKLGFQVDIQLDEGIVGLTLNLAKCDES"
     gene            4037..5392
                     /gene="pssA"
                     /locus_tag="OQP62_003542"
     CDS             4037..5392
                     /gene="pssA"
                     /locus_tag="OQP62_003542"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HCS1722987.1"
                     /translation="MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYTPATFRETLLEKI
                     ASATQRICIVALYLEQDDGGKGILDALYAAKRQRPELDVRVLVDWHRAQRGRIGAAAS
                     NTNADWYCRLAQENPGIDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYL
                     HQHDKYRYDRYQLIRNRQMADIMFDWVTQNLMNGRGVNRLDNTQRPKSPEIKNDIRLY
                     RQELRDASYHFQGDANDEQLSVTPLVGLGKSSLLNKTIFHLMPCAEHKLTICTPYFNL
                     PAVLVRNIIQLLRDGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRRFLSR
                     LQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLLTGNNLNPRAWRLDLENAILIHD
                     PKQELAPQREKELELIRTHTTIVKHYRDLQSIADYPIKVRKLIRRLRRIRIDRLISRI
                     L"
     gene            5437..5760
                     /locus_tag="OQP62_003543"
     CDS             5437..5760
                     /locus_tag="OQP62_003543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfiM family lipoprotein"
                     /protein_id="HCS1722988.1"
                     /translation="MRVLIPFTVLFLSGCSHLANDHWSGQDKAQHFMASAMLSAAGNE
                     YARHQGVSPDRSAAIGLMFSLSLGASKELWDSRPEGSGWSWKDFVWDVAGATTGYAIW
                     QMARY"
     gene            complement(5757..7058)
                     /locus_tag="OQP62_003544"
     CDS             complement(5757..7058)
                     /locus_tag="OQP62_003544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1722989.1"
                     /translation="MAEIIQRIDKNNAEAPEMRRHIWAIVGASSGNLVEWFDFYVYSF
                     CSLYFAHIFFPSSNTTTQLLQTAGVFAAGFLMRSIGGWLFGRIADRRGRKASMLISVC
                     MMCMGSLVIACLPGYDTIGTWAPALLLIARLFQGLSVGGEYGTSATYMSEVALEGRKG
                     FFASFQYVTLIGGQLLALLVVVILQQVLEDAELRAWGWRIPFALGAVLAVVALWLRRQ
                     LDETSKHETRALKEAGSLKGLWRNRKAFLMVLGFTAAGSLCFYTFTTYMQKYLVNTAG
                     MHANVASGIMTAALCVFMLVQPLFGALSDKIGRRTSMLCFGALATLFTVPILSALQNV
                     TSPYAAFALVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEY
                     VALSLKSVGMESSFFWYVTAMAVLAFLVSLMLHRKGKGLRL"
     gene            complement(7162..7617)
                     /locus_tag="OQP62_003545"
     CDS             complement(7162..7617)
                     /locus_tag="OQP62_003545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4385 domain-containing protein"
                     /protein_id="HCS1722990.1"
                     /translation="MAIKPFNYQQDFSSIDFRQQPELYQVGRGEQGGLLVEPYKSEIL
                     PFWRYKDEASAMKSAEQIYQLFEAYRQQDDFVGMDMARKFIQMGYTRARRYANYKGGK
                     KYAEDGSLNTRGNDPIKAAAATVFKGWWDKIRQDEDYLKRKRQHQARWG"
BASE COUNT         1899 a         2102 c         2038 g         1812 t
ORIGIN      
        1 agcgggacgt cttccgacgt attcagaggt tagctatgaa caccgtttgt acccattgtc
       61 aggccattaa ccgcatcccc ggcgatcggc ttcaggacgc ggcaaaatgt ggacgctgcg
      121 gtcatgagtt gtttgacgga gaagtcatta atgcgaccgg cgaaacgctg gacaaactgt
      181 tgaaggacga tcttccagtg gtgatcgact tttgggcacc ctggtgcggc ccttgccgta
      241 actttgcgcc aatcttcgag gatgtcgcag aagagcgcag cggtaaagtc cgtttcgtca
      301 aagtaaatac cgaggcggaa cgggaactca gcgctcgttt cggtatccgc agcatcccga
      361 tgattatgat ttttaaacat ggacaggtgg tcgatatgct taatggcgca gtgcctaaag
      421 cgcctttcga cagctggctg aacgaagcgc tgtaaacgcc acggggcgca tcttgtgccc
      481 cgttttcacc tctgccacaa tagcgttttt ctccgcaaac gctttctatg accaataacg
      541 ctgtccttca gttacgcgcc gaacggcttg cgcgcgctac tcgccctttt cttgccagag
      601 gcaatcgggt tcgccgctgt caacgctgcc tgctgccgct aaaatcttgc ctgtgtgata
      661 cgttaacgcc ttctcaggcg aaaagccgtt tttgtctggt catgtttgac actgaaccga
      721 tgaaacccag caataccggc cggctgatag ccgatatttt gccagatacc gcggcgtttc
      781 agtggtcgcg taccgagccg ccgcaggcgt tgctggagct ggtacagcat ccggattatc
      841 agccgatagt ggtctttcct gcgtcctacg ccggcgaagc gcgcgaggtc atttccaccc
      901 cgcccgccgg gaaaccgccg ctgtttatta tgctggacgg cacctggccc gaagcacgta
      961 aaatgtttcg taaaagccct tatctggatc atctgccggt catttccgtc gatttatcgc
     1021 gtctttcagc ttatcgtctg cgtgaaatcc atgccgaagg gcaatattgt accgccgaag
     1081 tcgcgatagc gttgttagat ctggcgggag atcccgaggc ggcaaccagt ttaggtgaac
     1141 atttcatccg tttcaaaacg cgctatctgg caggaaaaac gcaacatccg ggaaacgtca
     1201 cagcataaaa tagcgaaagc gtttaaaatt atccggtcac ttctgtgtaa gggaaaccgg
     1261 tatgagccag caaggactgg aagcgctact gcgaccaaaa tcgatcgcgg tgattggcgc
     1321 atcaatgaag ccccaccgcg cgggttacct gatgatgcgt aacttgttgg cgggcggatt
     1381 caatggcccc gtccttcccg tgacgcccgc ctggaaagcc gttttaggcg tcatggcctg
     1441 gccggatatc gccagtcttc ctttcacccc cgatctggct attttatgca ctaacgccag
     1501 ccgtaacctg gcgttactgg acgcgcttgg cgcgaaaggt tgtaaaacgt gcattatcct
     1561 ttctgctccc acgtcgcaac atgaagaact tcttgccagt gcccggcatt ataaaatgcg
     1621 tctgctgggt ccaaacagtc ttgggctcct cgcgccgtgg caagggctga atgccagctt
     1681 ttctcccgtc ccgattaaac agggcaagct cgcttttatt tcccagtctg ccgccgtgtc
     1741 caatactatt cttgactggg cgcaacagcg tgaaatgggc ttttcctact ttatcgcgct
     1801 gggcgatagc ctggatattg atgtcgatga actactggac tatctggcgc gcgatagcaa
     1861 gaccagcgca attttgctct atctggaaca gttaagcgac gcccgccgtt ttgtttccgc
     1921 cgcccgtagc gcttcacgta acaaaccgat tctggtgatt aaaagcggcc gaagcccggc
     1981 agcccagcgt ttacttaata ccagcgcggg aatggaccct gcgtgggatg cggccatcca
     2041 gcgcgcaggc ctgctgcgag tccaggatac gcacgagctt ttttccgccg tcgaaacact
     2101 tagccatatg cgtccgctac acggcgacag actgatgatc atcagcaatg gcgccgcgcc
     2161 tgccgcgctg gcgttagatg agttgtggtc gcgtaacggc aagctggcga cattgagcga
     2221 agagacctgc ctgcaactac ggcagacgct tcccgcgcac attgatattg ccaatccgct
     2281 ggatctgtgt gatgacgcca gcagcgaaca ttacgtcaaa acgctggata tcctgctcgc
     2341 cagtcaggat tttgacgcgc ttatggttat ccactctccc agcgctgccg cgccgggtac
     2401 ggaaagcgcc catgctctga tcgagacgat taagcgccac cccagaggca agtttgttac
     2461 gctgctgaca aactggtgcg gcgagttctc atctcaggaa gcaagacggc tgttcagcga
     2521 agccggatta ccaacctacc gcacgccgga aggcacgatt accgcgttta tgcacatggt
     2581 ggaataccgg cgtaaccaga agcaactgcg ggaaacgcca gcgttgccga gtaacctgac
     2641 gtccaatacc gctgaggcgc ataatctgtt acagcgggcg attgcggaag gcgccacttc
     2701 actggatacc catgaagtac agccgatttt acacgcctat gggctgcaca cgctcccaac
     2761 ctggattgcc agcgacagcg ctgaagcagt gcatatcgcc gaacagatag gctatccggt
     2821 agctctcaag ctgcgctcgc ccgacattcc gcataaatct gaagttcagg gggtcatgct
     2881 ttacctgcgc accgcaagcg aggtacaaca ggccgcgaac gccattttcg atcgtgtaaa
     2941 gatggcctgg ccgcaggcgc ggattcacgg tttgctggta caaagcatgg ctaaccgcgc
     3001 cggcgcgcag gagctgcgtg tggtggtcga gcacgatccg gtgtttggtc ctttgattat
     3061 gttgggtgaa ggcggcgtag agtggcgtcc ggaagagcag gccgtcgtcg cgctgccgcc
     3121 gctcaacatg aatctggcgc gctatctggt gattcagggc attaaacagc ggaaaattcg
     3181 cgcccgtagc gcgctgcgtc cgctggatat tgtcggttta agccaattgc tggtccaggt
     3241 ttcaaacctg attgtcgatt gcccggaaat tcagcgtctg gatatccatc cgctgctggc
     3301 ttccgccagt gagtttaccg cgctggatgt gacgctggat attgccccgt ttgatggcga
     3361 taacgaaagt cgtcttgcgg tacgccccta tccccaccag cttgaagagt gggtggagat
     3421 gaaaaacggc gatcgctgcc tgttccgtcc gatcctgccg gaagatgagc cccaactgcg
     3481 acaattcatc gcacaggtca ccaaagagga tctttactac cgttatttca gcgagatcaa
     3541 cgaattcacc catgaagatt tagccaacat gacgcagatc gactacgatc gagaaatggc
     3601 ctttgtggcc gtgaggcgga tggacaacgc tgaagagatc ctcggcgtaa cgcgcgcgat
     3661 ctccgatcct gacaacgtag atgccgaatt tgccgtattg gtgcgttcag atcttaaagg
     3721 gttgggttta ggacgccgtt taatggagaa attgattgcc tatactcgcg atcacggatt
     3781 gaagcggctg aacggtatta cgatgccgaa caatcgcggc atggtcgcgc tggccagaaa
     3841 actgggattt caggtcgata ttcagctcga cgagggcatc gtgggattga cgctgaatct
     3901 ggccaaatgt gatgaatcgt gagtaatgta ctggaaatgt tgaccacttt aacgggtact
     3961 gatgttatta ttgctcgctt atgtcgtctg catagcacag aggacccttc aatgaacaga
     4021 gaagaaatgc actgtgatgt tgtcaaaatt taagcgtaat aaacatcaac aacaccttgc
     4081 ccaactccct aagatttctc agtcagttga tgatgtagat ttcttttata ctcctgctac
     4141 ttttcgggag acactgctgg agaaaatcgc cagcgcgacg cagcgtattt gtatcgttgc
     4201 cctgtatctg gaacaggacg atgggggtaa aggtatactc gacgcgctct atgcggctaa
     4261 acggcagcgt cctgaactgg acgtgagggt gctggtcgac tggcatcgcg cgcaacgcgg
     4321 gcgcattggc gcagcggcct cgaataccaa tgcagactgg tattgccgac tggcgcagga
     4381 aaaccccggc attgatgtcc cggtttacgg cgtgccgatt aatacgcgag aagcgcttgg
     4441 cgtactgcat tttaaaggct ttatcattga tgatagcgtc ctgtacagcg gcgccagcct
     4501 gaacgatgtc tatctccatc agcatgacaa atatcgctac gatcgctacc agctgattcg
     4561 caatcggcaa atggcagaca tcatgtttga ctgggtgacg caaaatctga tgaatggccg
     4621 tggtgtgaat cgtctggata atacccagcg gccgaaaagc ccggagatta aaaacgatat
     4681 ccgcttatac cgtcaggagc tgcgtgatgc gtcatatcat tttcagggtg acgctaatga
     4741 cgagcagctc tccgttacgc cgctggtcgg gcttggaaaa tccagtctgc tgaacaaaac
     4801 cattttccat ctcatgccct gtgcggagca taagctcacc atttgtaccc cttacttcaa
     4861 tctaccagcg gtactggtgc ggaatattat tcagctactg cgcgacggaa agaaagtcga
     4921 aatcattgtt ggcgataaaa ccgcgaatga tttttacatt ccggaagatg aaccgttcaa
     4981 gatcattggc gcgctgccct atctctatga gattaacctg cgccgcttcc tgagccgttt
     5041 acagtattac gtcaataccg atcagcttgt ggtgcgtctg tggaaagatg acgacaatac
     5101 ctatcatttg aaagggatgt gggtagatga taaatggatg ctactcaccg gcaacaatct
     5161 gaatcctcgc gcctggcgtc tggatctgga aaacgccatt ctgatccacg atcctaagca
     5221 agagcttgcc cctcagcggg aaaaagagct ggaacttatc cgaacgcaca caaccatcgt
     5281 aaaacattat cgtgacctgc agagcattgc cgactatccg ataaaagtgc gtaaattgat
     5341 tcgccgtctg cgccggatcc gcatcgacag attaattagc cgtatcctgt aatcgaagcc
     5401 ccgtcctgta cggggttttc tcttaggagt gaactggtgc gcgtgttgat tccttttacg
     5461 gtgttgtttc tctccgggtg cagccatctg gctaacgacc actggagcgg tcaggataaa
     5521 gcccagcatt ttatggcatc agcgatgcta tcggcagccg gtaatgagta tgcgcgtcac
     5581 cagggagtaa gccctgaccg cagcgcagcg atagggctga tgttttcttt gagtctcgga
     5641 gcctcaaaag aactctggga cagccgcccg gaaggcagcg gctggagctg gaaagatttt
     5701 gtctgggatg tcgctggcgc gacaaccggt tacgctatct ggcaaatggc gcgatactaa
     5761 aggcgtaagc cctttccttt acggtgcaac atcaacgaaa ccaggaaagc cagaacggcc
     5821 atcgcggtaa cataccagaa gaacgaactc tccataccga cagattttag cgacagcgcg
     5881 acatattccg cagagccgcc aaataacgcg tttgctaccg cgtaagataa accgacgccc
     5941 agggcgcgaa cctgcgccgg aaacatctcc gctttcagga tcccgctaat cgaggtatag
     6001 aaactcacaa tcaatagcgc gcacatcact aaagcaaatg cggcataagg cgacgtcaca
     6061 ttctgcaacg cggagagaat tggaacggtg aaaagcgtcg cgagtgcgcc aaaacatagc
     6121 atagaggtgc gcctgccaat cttatcggat aacgcgccga ataacggctg caccaacatg
     6181 aaaacacaca gcgcagccgt cataatgccg ctggcgacat tggcatgcat acctgctgta
     6241 tttaccagat atttctgcat ataggtggtg aaggtataaa agcacagcga gcctgccgcg
     6301 gtgaaaccaa gcaccatcaa aaaggctttg cgattacgcc acaaaccttt caacgaaccg
     6361 gcttctttta atgcgcgagt ctcatgcttc gaggtttcat ccagctggcg acgtagccat
     6421 aacgccacaa ccgccagcac ggcgcccagc gcaaagggaa tacgccatcc ccaggcacga
     6481 agctcagcat cctccagaac ctgctgcaaa atcacaacga ccagcaatgc cagtagttgg
     6541 ccaccgataa gcgtaacgta ctgaaacgac gcgaaaaatc ccttacgacc ttcaagcgca
     6601 acttcactca tatatgtcgc gctggtccca tactctcccc ctaccgagag cccctgaaat
     6661 aaccttgcaa taagtagcag cgccggtgcc caggtgccga tggtatcgta accaggtaag
     6721 caggcaatca ccagcgaccc catgcacatc atgcacaccg aaatcaacat tgaggctttg
     6781 cgcccgcgtc gatcggcaat gcgtccaaac agccaaccac cgatagaccg cattaaaaaa
     6841 ccggcggcaa agacgcctgc cgtttgcaaa agctgagtag tggtattact agaaggaaag
     6901 aagatatgtg caaaatagag cgagcagaaa gagtagacgt agaaatcaaa ccattccact
     6961 aagtttccgg aagaggcccc cacgatagcc catatgtgtc gccgcatctc cggagcctca
     7021 gcgttgtttt tatctatacg ctgaataatt tctgccatac tgttctcctt gttgccaggc
     7081 ttaatcggcc ttttattttg gagattcaga ttacgcgaga ctaaaaagta aataaagtgt
     7141 taattatttg tctgctaatt tttatcccca ccgtgcctga tgctggcgtt tccgtttcag
     7201 atagtcttcg tcctgacgga ttttatccca ccaacctttg aaaaccgttg ccgccgcggc
     7261 cttaatagga tcattacccc gtgtattcag gctgccgtct tctgcatact ttttaccacc
     7321 tttatagtta gcgtatcgcc tggcgcgggt gtatcccatc tgaataaatt tacgcgccat
     7381 gtccatacca acgaaatcat cctgctgccg gtaagcttcg aacaactggt agatctgttc
     7441 tgcggatttc atcgccgatg cttcatcttt atagcgccag aaaggaagaa tttcgctttt
     7501 gtagggttca accagtagcc ccccctgctc tcctcgtcca acctgataca attcaggctg
     7561 ctggcggaag tcaatgctgg aaaagtcttg ctggtagtta aaaggtttga tagccaatga
     7621 aaatcctcac tgcttatata agcacgtgta aaggatagtt catcgttaac gattgggtgg
     7681 gttgtgctct tatcggttct acaagagcac cagcttcgta ggcgggataa ttgctgtagg
     7741 ccggataagg cgaagctgcc atccggcggt gcaggttgcc tgatggcgct gcgcttatca
     7801 ggcctacatt tttacagtta ccacacacgc aaagaagccc gtccgtcaga a
//
LOCUS       DAJVSD010000206         7759 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.206, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000206 DAJVSD010000000
VERSION     DAJVSD010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7759)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7759)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7759
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.206"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..771
                     /gene="rna"
                     /locus_tag="OQP62_003546"
     CDS             <1..771
                     /gene="rna"
                     /locus_tag="OQP62_003546"
                     /EC_number="4.6.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease I"
                     /protein_id="HCS1722991.1"
                     /translation="VLLTPIFAANADELQAQQYGDFTDYVLALSWQTGFCQSQHERRH
                     REPDECRLQKEPANKADFLTVHGLWPGLPKSIAARGVDQRRWQRFGCATRPIPNLPEV
                     KASRKCSAPAPGLSPDIATALKEVMPGAGGNSCLERYEYAKHGACFGFDPNAYFGTMI
                     RLDKAIKDSALGQFLADNYGKTVSRAEFDSVVAQTWGQDNVKAVKVNCHGNPAYLTEI
                     QFSLKASMINAPLSSASFQPQPHPGNCGKQFIIDKAGY"
     gene            1006..1416
                     /gene="rnk"
                     /locus_tag="OQP62_003547"
     CDS             1006..1416
                     /gene="rnk"
                     /locus_tag="OQP62_003547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside diphosphate kinase regulator"
                     /protein_id="HCS1722992.1"
                     /translation="MSRPTIIINDLDAERIDRLLEQPAYADLPIADALNAELDRAQMC
                     SPQEMPNDVVTMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLR
                     VGDTIHWELPGGASTHLEVLELEYQPEAAGDFLR"
     gene            complement(1499..2737)
                     /locus_tag="OQP62_003548"
     CDS             complement(1499..2737)
                     /locus_tag="OQP62_003548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent formaldehyde
                     dehydrogenase"
                     /protein_id="HCS1722993.1"
                     /translation="MKALTYHGPHHVKVENVPDPGIEQPDDIILRVTATAICGSDLHL
                     YRGKIPQVKHGDIFGHEFMGEVVETGHDVKNIRKGDRVVIPFVIACGDCFFCRLQQYS
                     ACENTNDGHGAAMNKKQIPPPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLL
                     SDDKALFLSDILPTAWQAAKNAQIQQRSSVAVFGAGPVGLLTIACARLLGAEQIFVVD
                     HHAWRLRFAEERYGAIPINFDDENDPAEKIIEQTAGHRGVDAVIDAVGFEAKGSMTET
                     VLTNLKLEGSSGKALRQCIAAVGRGGVVSVPGVYAGFIHGFLFGDAFDKGLTFKMGQT
                     HVHAWLGELLPLIEKGLLKPEEIVTHYMPFEEAARGYEIFEKREEECRKVILVPGAMS
                     AQAAQKQATGVINPMPGGVV"
     gene            2960..3388
                     /gene="uspG"
                     /locus_tag="OQP62_003549"
     CDS             2960..3388
                     /gene="uspG"
                     /locus_tag="OQP62_003549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspG"
                     /protein_id="HCS1722994.1"
                     /translation="MYKTIIMPVDVFEMELSDKAIRHAEFLAQQDGVIHLLHVLPGSA
                     SMSLHRFAADVRRFEEHLQHEAETRLQTMVGHFSIDPSRIKTHVRFGSVRDVVNEMGE
                     ELDADVVVIGSRNPSITTHLLGSNASSVVRHATLPVLVVR"
     gene            complement(3456..4223)
                     /locus_tag="OQP62_003550"
     CDS             complement(3456..4223)
                     /locus_tag="OQP62_003550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit
                     family protein"
                     /protein_id="HCS1722995.1"
                     /translation="MEKYELPLVFFTVLSQMSVGMALVLTWRTLRGEVEGQRFYWLAT
                     GLVLALASIAAILHLAHPDRAYNALINLRHAWLSREILGATLFGAAVGVTFLAKGHKA
                     MALIASVFGVLLVAVQGMTYAAPAMVAIANGFTMLLFFITVWVMGCAAIPLLRLRPAV
                     PALRQGIVVCIAVLIAAPLVWLSGGTVMQMTARSWLASPFYLASLVCLALAFVASRHG
                     DSRPKLLFVLLFVGVFLSRLVFFGDTVSTIVNIGHLY"
     gene            complement(4223..4780)
                     /locus_tag="OQP62_003551"
     CDS             complement(4223..4780)
                     /locus_tag="OQP62_003551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HCS1722996.1"
                     /translation="MRRAFLVNSDKCIGCRGCAMACKSFNQLEPDRFWRYVYPLDKDI
                     YPHEERAFYSLACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYG
                     APRFNEETRKAEKCSICYERLDIGMNPACVNACPVGALSIIDLDADPVPDNAVQYPPG
                     FPHMPQLNPGTRFILARQPKQPEDK"
     gene            complement(4777..7056)
                     /locus_tag="OQP62_003552"
     CDS             complement(4777..7056)
                     /locus_tag="OQP62_003552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HCS1722997.1"
                     /translation="MSNETGHLNRRSFLKGIVALGTVAALPGGLLTSRCALAQPPVPF
                     NPKTYKIYRNACPRNCYDTCSLKTWVKDGVITFVEGAPESTFTHGTPYVKGLSYPRRV
                     YSPDRIKYPMAQDVRGSGNWRRISWEEAMQRIAAKMLEIKKKDSSMLGLALTKYSGKF
                     GVLNYAVEGMMSSLGYTTRFAGTPCWPAGIDAQNYDMGDMWCNDPEDMVKAKYIIIWG
                     ANPAWCSMHSMKYIYQAREKGAKVVVIDPLLSQTAAKADLYLRVRPGSDGALALGMAR
                     HLVDKGLVDQDFVNNDAHGYPEFEAYLRNHVTVEWAAEICGLSAQVIRQLAEEFTAVN
                     PATAWIGYGMQRHVNGGANVRAIDAFVAMSGNIGVEGGGARYGHLHTWGFNYNAMLQK
                     PPVGAIGIPGAAGTTSEFGAAAGSDAVQYSDRSLNINQTAQGILEANDPPVRMLWVAC
                     KNPFAQDFDRSKMKKAFEKLEMVVCADQFFNETVQHADIVLPVTTAFEEWNVDASYWH
                     YWLSINQPAIKPMYEAKCDLEIATMLSRTINKMAPGSCTFPQEFDHKRWLDQEFNDGM
                     AKMFGISSWDDLLDGPKKAILPSSAAWYDRKFKTPSGKYEFKSELAEKNGHTALPEYK
                     PEAESKLPFHLFTPHVQFGLHSQFINLDWMQVFYPEPFVYIHPSSAKKKGISENDRVK
                     VFNNIGEVELRAKVTTNVPEDFLVMYEAWFPKRQYNVQNVVADTPADMGLMKTGAPGA
                     AIHSQFADVVLIGKGESVA"
     gene            complement(7127..7609)
                     /locus_tag="OQP62_003553"
     CDS             complement(7127..7609)
                     /locus_tag="OQP62_003553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000377432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HCS1722998.1"
                     /translation="MDSIYESLTELEKTGLTLRDFFNSHDSHSLKSAYVRLNPSAAVN
                     LTDRAWLEAEYDFNALFVGPGKLLAAPFASVYLEEDALVMGKATLEIRDFMAALGLSV
                     NQESNIPDDHISCVLELTTLLLANTRQTSQYCSTLTQYINNYLTKWVPLYIEKIKTHA
                     "
BASE COUNT         1898 a         2163 c         1910 g         1788 t
ORIGIN      
        1 gtcctcttaa ccccgatttt tgccgccaac gccgacgaac ttcaggcgca acagtacggt
       61 gatttcactg actatgtgct ggcgctttcc tggcaaaccg gtttttgtca aagccagcat
      121 gaacgccgcc atcgggaacc cgatgagtgc cgtctgcaaa aagagccagc caacaaagca
      181 gactttctga ccgtccacgg cctgtggcca ggattaccca aatctatcgc cgcacgcggt
      241 gttgaccaga gacgctggca gcgctttggt tgtgcgacgc ggccaatccc gaatctgcct
      301 gaagtcaagg ccagccggaa atgctccgcc cccgcccccg gactttcgcc tgacatcgcg
      361 acagcgctta aggaagtgat gcccggcgcg ggggggaatt cctgtctgga gcgctacgaa
      421 tatgccaaac atggcgcctg tttcgggttt gatcccaatg cctatttcgg caccatgata
      481 cggctggata aggcgataaa agacagcgcg ctggggcagt ttctggcgga taattacggc
      541 aagaccgtta gccgcgctga gtttgatagc gtcgtcgcac aaacgtgggg ccaggataat
      601 gtcaaagccg ttaaagtaaa ctgccatggc aatcccgcct atttaacaga gattcagttt
      661 tcattaaagg cgtcgatgat taacgccccg ctctcctctg cctcattcca gccgcagccg
      721 catcccggca actgcgggaa acagtttatt atcgataaag ccggttattg acgaagcaga
      781 ggtttaaaac cgtagccaca tttgagaaca cgcccgaatg tagactaaaa ttcactcagg
      841 gctatgacgt ttgaggattt acccgaatgt gaactaaatc acttcaaaga cggggtaagt
      901 ctcagtatca tcatgagagt taaaccctcg ccgccagacg gtgagggttt tcttttggga
      961 ccatttacct gcactactcg cagtatcgat gacatggagt aagaaatgtc cagacccact
     1021 attatcatta acgaccttga cgccgaacgt attgatcgtc ttctggaaca gcctgcgtat
     1081 gcggatctgc cgattgccga cgcgctcaac gccgaactgg atcgcgcgca aatgtgttcg
     1141 ccacaagaga tgccgaacga tgtcgtcacc atgaacagcc gcgttaaatt ccgcaatttg
     1201 agcgatggtg aaacacgcgt gcggacgctg gtgtaccccg ccaatatgac ggacagcagt
     1261 acccagcttt cggtaatggc gcccgtcggc gcggcgttgc tgggactgcg cgtcggcgac
     1321 accattcact gggaactgcc gggcggcgcc tccacccatc tcgaagtgct ggaactcgaa
     1381 tatcagcctg aagccgcggg cgacttcctg cgttaaacca tctgcataag cgttaatgcg
     1441 tttacacaga ggatgcctgc gcatcctctt tccgttagct ctttcatttc tgcctgcttc
     1501 agacaacgcc gcctggcatc gggttgatta ctcccgtcgc ctgtttctgc gccgcttgtg
     1561 ccgacatcgc tcccggcacc aggataacct tccggcactc ttcttcgcgt ttttcgaaaa
     1621 tttcgtagcc gcgcgccgcc tcttcaaacg gcatatagtg cgtgacaatc tcctccggct
     1681 tcagcaaccc tttttcaata agcggtaata attcccccag ccacgcgtga acatgggttt
     1741 gacccatttt aaaagttagc cccttatcaa aggcgtcgcc gaataaaaag ccgtgaataa
     1801 aaccggcata cacgccgggc acgctgacca cgccgccgcg tcctaccgcc gcgatacatt
     1861 gtcgcagcgc tttgccgctg ctgccttcca gtttaaggtt cgtcagcacc gtctccgtca
     1921 tgctgccttt cgcttcaaag cctacggcat caattaccgc gtccacgccg cggtgtcctg
     1981 ccgtctgctc gatgattttt tccgccggat cgttctcatc atcgaagttg atcggtatcg
     2041 cgccgtaacg ttcttcggcg aaacgcaggc gccaggcgtg gtgatcaacg acgaagatct
     2101 gctccgcgcc cagcagtcgc gcacaggcga tagtcagtaa tcctaccggc cctgcgccaa
     2161 aaaccgccac gctggaacgt tgctgaatct gggcattttt tgccgcctgc caggcggtag
     2221 gcaaaatatc agaaagaaac agcgctttat cgtcagataa cagcggcggc accttaaatg
     2281 gaccgacatt accttttggc acgcgaacat attcggcctg tccgccggga acgccgccat
     2341 acagatggct ataaccaaac agcgccgccg gcggcgggat ctgtttttta ttcatcgccg
     2401 cgccgtgtcc gtcgttagtg ttttcacacg ctgaatattg ctgtagtcga cagaaaaagc
     2461 agtcgccaca agcaatgacg aacgggataa caacccgatc ccctttccga atattcttca
     2521 catcatgtcc ggtttccacc acctcgccca taaattcatg gccgaaaata tcaccatgtt
     2581 ttacctgtgg gatcttgccg cgatagagat gcaaatcaga tccgcaaatc gcggtggcgg
     2641 taacacgcaa aatgatatcg tcaggctgct caatgccggg atcgggtacg ttttcaacct
     2701 ttacgtgatg tggaccgtga tacgtcaatg ctttcatgca gcctccgggg taacggtgaa
     2761 tgttgcgttc gactataaaa gggtagctat cccggagaga ctaccggaaa aacaggcggc
     2821 tttaggattt ttcctggaaa atacacgact tttttaacgt caggttgtcg caatatttaa
     2881 aattgccaga caaatagcag aaagaaacat tattatatgc ttgaataaat tcagtattga
     2941 ttaacaggga gtaacgggta tgtataagac aatcattatg ccggttgatg tttttgaaat
     3001 ggaacttagc gataaagcca ttcgccacgc tgagtttctg gcgcaacagg atggcgtcat
     3061 tcatctgttg catgtactgc ctgggtccgc gagcatgagt ctgcaccgct ttgccgccga
     3121 cgtgcgtcgc tttgaagaac atttacagca tgaggcggaa acgcgtctgc aaacgatggt
     3181 gggacacttc agtatcgatc cttcacgaat taaaacgcat gttcgctttg gtagcgtgcg
     3241 cgatgtcgtc aatgagatgg gcgaagaact ggatgcggat gtcgtggtaa tcggttcgcg
     3301 taatccgtct atcacgacac acctgttggg gtctaacgcc tcaagcgtgg tgcgccatgc
     3361 gacgctgcca gtattggttg tgcgttaacc ctggtggcta aaaactgaca cgccctgcca
     3421 ggtcacgcct ggcagggctt tttactgcat catcgttagt acaaatgccc gatattcaca
     3481 atagtactca ccgtgtcgcc aaaaaagacc agccgactca gaaatacgcc aacgaataac
     3541 aagacgaaca ggagtttcgg gcgcgaatca ccgtgacggc tggcgacaaa agcgagcgca
     3601 aggcaaacca ggcttgccag ataaaacggg gaagccagcc atgaacgcgc cgtcatctgc
     3661 atgaccgttc ccccgcttaa ccacaccagc ggcgccgcga taagtaccgc gatacacacc
     3721 acaattccct ggcgtaacgc aggaacggca ggcctgagtc ttaacagcgg aatcgccgcg
     3781 caacccatga cccataccgt aataaaaaat aacagcatgg taaatccatt agcgatagct
     3841 accatcgctg gcgcggcgta ggtcatcccc tgcaccgcca ccagtaacac gccgaacacg
     3901 gaggcgataa gagccatcgc tttatgtccc tttgccagga acgttacgcc gaccgctgcg
     3961 ccaaacaacg tggcgccaag gatttcccga cttaaccagg catgtcgcag gttaatcagc
     4021 gcattataag cgcgatcggg atgcgccaga tgcagaatcg cggcaataga cgccaatgcc
     4081 agcaccagcc cggtggccaa ccaatagaaa cgctggcctt ccacttcacc acgcagcgta
     4141 cgccatgtca gtaccaaagc catcccgaca gacatctggc ttaataccgt aaaaaacacc
     4201 agcggcagtt catatttttc cattacttgt cctccggctg cttaggctgg cgcgccagaa
     4261 taaagcgcgt tcctggattg agctgtggca tatgcgggaa ccctggcgga tactgcaccg
     4321 cattatcggg cacaggatcg gcatccaaat cgataatcga caaggcgccc accggacagg
     4381 cgttcacgca cgccggattc ataccgatat caagacgctc gtagcatata ctgcattttt
     4441 ccgctttacg cgtctcttca ttaaaacgcg gcgcgccata aggacagtta cgaatacagt
     4501 ttttacagcc gatgcagcgc tcagggttat gcaccaccac gccatcttca cgtttggtat
     4561 aggcttcgac cggacaggcg gcgacgcagg ccggatgttc gcagtggtta caggccagcg
     4621 agtaaaacgc ccgctcttca tgtggataga tgtctttatc caacggataa acgtagcgcc
     4681 agaagcgatc cggctccagt tggttaaagc ttttacacgc catagcacag ccgcggcagc
     4741 cgatgcactt atcgctattc actaaaaacg cacgtctcat gctacggatt cccctttacc
     4801 gatcaataca acgtcagcaa actgactgtg gatagcggcg cccggcgcgc cagttttcat
     4861 cagccccata tcagcaggcg tatcggccac gacgttttgc acgttgtact gccgtttcgg
     4921 gaaccacgct tcatacatca ccagaaaatc ttccggcacg ttggtggtga cttttgcccg
     4981 cagttccacc tcgccaatgt tgttgaaaac tttgacccgg tcattttcgc taatgccttt
     5041 tttcttcgcg gaagaaggat ggatataaac aaacggttcc ggatagaaca cctgcatcca
     5101 gtccaggttg ataaactgcg agtgcaggcc aaactgcacg tgcggcgtaa acagatggaa
     5161 aggcagtttg ctctcggctt ccggtttgta ttccggcagc gcggtgtggc cgtttttctc
     5221 cgccagttca gatttaaatt catacttgcc tgacggcgtt ttgaacttgc gatcgtacca
     5281 ggcggcagag cttggcagga tcgctttttt tggcccgtcc agcagatcgt cccaggaaga
     5341 gatgccgaac attttcgcca taccgtcgtt gaactcctga tccagccagc gcttgtgatc
     5401 gaactcttgc gggaaggtac aggaacccgg cgccatctta ttaatggtgc gcgacagcat
     5461 ggtagcgatt tcaaggtcgc attttgcttc atacatcggc ttaatcgccg gctgattaat
     5521 ggaaagccag tagtgccagt aagaagcatc cacgttccac tcttcaaacg cggtggtaac
     5581 gggcagcacg atatcagcgt gttgcaccgt ttcgttgaag aactgatcgg cgcagaccac
     5641 catttccagt ttttcaaacg cttttttcat cttgctgcga tcgaaatcct gggcaaacgg
     5701 gtttttacag gcgacccaca gcatacgaac cggcggatcg ttggcctcca gaatcccctg
     5761 cgccgtctgg ttaatattca gagagcgatc ggagtactgc acggcgtcgc tgccagcggc
     5821 agccccgaat tcactggtgg tgcccgccgc tcccggtatg ccaatagcgc ccaccggcgg
     5881 cttctgcagc atggcgttat agttaaagcc ccaggtatgc agatggccat aacgcgcgcc
     5941 gccgccttcg acaccgatgt tgccggacat agcgacaaag gcatcgatag cgcgaacgtt
     6001 ggcgccgccg ttgacatgac gctgcatccc gtaaccaatc caggccgtgg ccgggttaac
     6061 cgccgtaaac tcttccgcca gttgacgaat cacctgtgcc gacaacccgc agatttctgc
     6121 cgcccactcc acggttacat ggttacgcag ataggcttca aattccggat agccatgagc
     6181 gtcgttgttg acaaaatcct gatccaccag gcccttatcc accagatggc gcgccatccc
     6241 cagcgccagc gcgccgtctg agccaggccg tacgcgcagg tagagatcgg ctttggcggc
     6301 agtctgcgac agcagcgggt cgataaccac gaccttcgcc cctttctcgc gcgcctgata
     6361 gatatatttc atggagtgca ttgagcacca ggctgggttc gcgccccaga taatgatgta
     6421 ttttgctttc accatatctt ccgggtcgtt acaccacatg tcgcccatgt cgtagttttg
     6481 cgcgtcaata ccggcaggcc agcacggcgt accggcaaaa cgggtggtat agccaagcga
     6541 ggacatcatc ccttcaacgg catagttcag cacgccaaac ttaccggaat atttggtcag
     6601 cgccagaccg agcatagaac tgtctttttt cttaatctcc agcattttgg cggcaatacg
     6661 ctgcatcgcc tcttcccatg agatgcgacg ccagttgccg ctaccgcgaa cgtcctgcgc
     6721 catgggatat ttaatacgat cgggactata aacccggcgc ggatagctca accctttgac
     6781 gtaaggcgta ccgtgagtaa atgttgattc cggcgcacct tccacgaaag taatgacccc
     6841 gtcctttacc cacgtcttga ggctacaggt gtcatagcag ttacgcggac acgcgttacg
     6901 ataaattttg tacgttttag ggttaaaggg aacaggcggc tgcgcaagcg cgcatcggga
     6961 ggtcagtaat cctccgggta aagccgcaac ggtgcccagc gccactatcc cctttaaaaa
     7021 agaacgtctg ttcagatgtc ccgtctcatt actcatattg atactctcgt tttaattcat
     7081 caaaccaata aaataagatg tccgccaccg tatataacgt ggtcgtttat gcatgagttt
     7141 ttattttttc gatatataat ggcacccact ttgttaaata gttattgata tattgagtga
     7201 gggtagagca gtattgtgac gtttgccggg tattagccag taatagtgtg gtcaattcca
     7261 gcacgcagga aatatgatcg tcaggaatat tgctttcctg attaaccgat aatcccaacg
     7321 ctgccataaa atcccgtatc tccagcgtcg cctttcccat caccagcgca tcctcttcca
     7381 gatacactga agcgaaaggc gcagccagca gcttgccagg gccgacgaat agcgcattaa
     7441 agtcatactc cgcttccagc cacgcccggt cggtaaggtt taccgcagca gatggattta
     7501 atctcacgta ggcagatttc agtgaatgac tatcatgaga attaaaaaaa tcacgcaatg
     7561 taagccctgt tttttctaat tccgtcagtg attcatagat tgaatccatg aataaataac
     7621 ctcacataca aatgcaatat aaatcaagaa aaaagaatgg gcatgttaac ggaagcgctt
     7681 aatctttctt tgataaaaaa acagaaaaat tccagttaaa tccgtagaag acttttttat
     7741 tgtttcaaag tttaaaaac
//
LOCUS       DAJVSD010000207         7737 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.207, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000207 DAJVSD010000000
VERSION     DAJVSD010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7737
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.207"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(326..1510)
                     /locus_tag="OQP62_003554"
     CDS             complement(326..1510)
                     /locus_tag="OQP62_003554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1722999.1"
                     /translation="MVHAQSASPRHPIFTALFGMMVLTLGMGVGRFLYTPMLPVMLAE
                     KQLTFNQLSWIASANYAGYLAGSLLFSFGLFHLPSRLRPMLLASAVATGILILSMAIF
                     TQPAVVMLVRFLAGVASAGMMIFGSMIVLHHTRHPFVIAALFSGVGAGIALGNEYVIG
                     GLHYALSAHSLWLGAGALAGILLLIVAMLIPPRAHALPPAPLARIENQPMSWWQLALL
                     YGFAGFGYIIVATYLPLMAKSAGSPLLTAHLWSLVGLAIIPGCFGWLWAAKHWGVLPC
                     LTANLLIQSACVLLSLASDSLLLLILSSIGFGATFMGTTSLVMPLARQLSAPGNINLL
                     GLVTLTYGIGQILGPLAASLSGNGASAIINATLCGAAALFFAALISTAQQIKQKRFVI
                     RE"
     gene            complement(1730..3001)
                     /locus_tag="OQP62_003555"
     CDS             complement(1730..3001)
                     /locus_tag="OQP62_003555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HCS1723000.1"
                     /translation="MNKIAELKRAKRLALSLLLIAAATFVTTLFLPPSFWVLSVKAIA
                     EAAMVGALADWFAVVALFRRIPIPFISRHTAIIPRNKDRIGENLGQFVQEKFLDTQSL
                     IALIRRHEPALLIGNWFSQPDNASRVGQHLLQIMSGFLELTDDARIQRLLKRAVHKAI
                     DKVDLSGTSALMLESMTKNDRHQVLLDTLIAQLIALLQRDSSRTFIARQIIRWLETEH
                     PLKAKILPTEWLGEHSAELVSDAVNSLLDDISHDRAHQIRHAFDRATYKLIDKLKHDP
                     EMAARAENIKSYLKEDEAFNRYLGEIWADLRQWLKTDINAEDSKVKQRIAHAGQWFGE
                     TLIADDALRASLNGHLEQAAHRVAPEFAAFLTRHISDTVKGWDARDMSQQIELNIGKD
                     LQFIRVNGTLVGGAIGLVLYLLSQIPALLSI"
     gene            complement(3088..4329)
                     /gene="mdtM"
                     /locus_tag="OQP62_003556"
     CDS             complement(3088..4329)
                     /gene="mdtM"
                     /locus_tag="OQP62_003556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtM"
                     /protein_id="HCS1723001.1"
                     /translation="MQRIIQFFSQRATTLFFPMALILYDFAAYLTTDLIQPGIINVVR
                     DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLIAGALIFTLACAATLLTT
                     SMTQFLVARFVQGTSICFIATVGYVTVQEAFGQTKAIKLMAIITSIVLVAPVIGPLSG
                     AALMHFVHWKVLFGIIAVMGLLALCGLLLAMPETVQRGAVPFSAVSVLRDFRNVFRNP
                     IFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMSTSQFAWAQVPVFGAVIVANMIVVR
                     LVKDPTRPRFIWRAVPIQLSGLATLLLGNLLLPHVWLWSVLGTSLYAFGIGMIFPTLF
                     RFTLFSNNLPKGTVSASLNMVILTVMAVSVEVGRWLWFHGGRLPFHLLAAVAGVIVVF
                     TLATLLQRVRQHEAAELAAEK"
     gene            4808..5773
                     /locus_tag="OQP62_003557"
     CDS             4808..5773
                     /locus_tag="OQP62_003557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012548938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HCS1723002.1"
                     /translation="MKKSTTSTPHDAVFKTFLRHPETARDFMEIHLPVSLRQLCDLRT
                     LKLEPGSFIEKNLRAYYSDVLWSLKTREGDGYIYVVIEHQSTPDAHMAFRLMRYAMAA
                     IQQHLDAGHKHLPLVVPMLFYHGVDSPYPFSLCWLDEFANPEVARRLYAAAFPLVDIT
                     VVSDDDIMQHRRIALLELIQKHIRQRDLLGLVERIASLLVTGCANDRQLKALFNYLMI
                     QHGHTPRFTTFIRDVVGHVPHTKERLMTLIERIRAADRRKGERQGRQLGLEEGLAEGL
                     EKGLEKGQHVAALRIARQMLADGLDRETVQRFTGLTAEELQDVSH"
     gene            5954..7325
                     /locus_tag="OQP62_003558"
                     /pseudo
     CDS             5954..7325
                     /locus_tag="OQP62_003558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463378.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
     gene            complement(7421..7564)
                     /locus_tag="OQP62_003559"
     CDS             complement(7421..7564)
                     /locus_tag="OQP62_003559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723003.1"
                     /translation="MVVWGGSRKIPYQPPHRTENAGIMNVCTNNTGIKSTVSATWINK
                     EGD"
     gene            7531..7695
                     /locus_tag="OQP62_003560"
     CDS             7531..7695
                     /locus_tag="OQP62_003560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1127 domain-containing protein"
                     /protein_id="HCS1723004.1"
                     /translation="MEFYENRPRQPFIGYVQLRRALKRWWLRKRACQALRRMSDEQLR
                     DIGLERKDVE"
BASE COUNT         1979 a         1980 c         2167 g         1611 t
ORIGIN      
        1 tcgagttgcg taaaggcggc aagggagtga gtccccagga gcataataac gatgtgactg
       61 gggtgagcaa cggcccgtca gggcgaggcc catggatggg ccgggtaatc cgtagccaac
      121 acataagcca cttgaagtag gaagggtata taaaataata gacagattga taacactaaa
      181 aaccatagaa taagtatagt ttttagtggc atctttacct tgaaataacg tgttgaggat
      241 gtgctattaa aaacagatcc gcattgcgcc gcgaatagca ttaaagatac aacccggtgc
      301 ggatagcgcg ggtttactct accgcttatt cacgtatcac aaaccgtttt tgttttatct
      361 gctgcgcggt gctgatcagc gcggcaaaaa agagcgccgc ggcgccgcaa agcgtggcgt
      421 tgataattgc cgacgcgcca ttgcctgaca gactggcggc gagcggaccg agaatttgcc
      481 caataccata cgttagcgtc accaggccta acaaattaat attgcccggc gcgctgagct
      541 ggcgggcaag cggcatcacc agtgaggttg tgcccataaa cgtggcgcca aaaccaatac
      601 tgctcagtat taacagcaac aacgagtcgc tggcgagaga cagcagcacg caggcgctct
      661 ggatcaacag gttcgcggtc agacatggca ggacgcccca atgttttgcc gcccacagcc
      721 agccgaagca gccgggaatg atcgccaggc cgaccaacga ccaaaggtgt gccgtgagta
      781 gcggagagcc cgcgcttttc gccatcagcg gcaaataggt agcgacaatg atgtagccga
      841 atccggcgaa accgtataac agcgccagtt gccaccagga cataggctga ttttcgattc
      901 ttgctaaggg cgcaggcggc agcgcatgag cgcggggggg aatcaacatt gccacgatta
      961 atagcaatat accggcgagc gctccggccc ccagccatag cgaatgggcc gaaagcgcat
     1021 aatgtaaacc gccaatgaca tattcgttgc ccagtgcaat cccggccccg acgccggaaa
     1081 agagcgcggc gatcacaaac ggatggcggg tatgatgcaa cacaatcatt gatccaaaaa
     1141 tcatcattcc cgcactcgcg acgcctgcca ggaagcgcac caacatgacg accgcgggct
     1201 gagtaaatat cgccatagac agaataagaa taccggtggc gaccgccgaa gccagcagca
     1261 tggggcgtag acgagagggg agatgaaaaa ggccaaagga aaacagtaag cttcccgcca
     1321 ggtaccctgc ataattggcg ctggcaatcc aggagagttg gttaaacgtt agctgctttt
     1381 ccgccagcat taccggcagc atgggcgtat acagaaagcg gccaactccc atccccagcg
     1441 tcaataccat cataccgaaa agcgccgtaa aaatgggatg gcgaggtgaa gcgctctgag
     1501 catgaaccat ggtttttctc tttgctaaag taaggcagga atgccggatt gtcgttgtaa
     1561 atgataataa aaagtaaaat taatgtttca aatttgcaag aaaagaaagt gaagcgcagg
     1621 cgaataacgg attgagaaga ggggcatcgg tgggaaatgg cattaaatta atgcctccca
     1681 cgtgcggggt ttggcagtta atctgaatga gaattgcgcc ttccccttct tagatactga
     1741 gcagtgccgg tatttgcgac agtaaatata acaccagacc aatagcgccg ccgaccagcg
     1801 tgccgttcac gcggataaac tgcaaatctt taccgatatt aagctcaatc tgctgcgaca
     1861 tatcgcgcgc atcccagcct tttacggtat cgctgatgtg gcgcgtcagg aaggcggcga
     1921 attccggcgc gacgcggtgc gcggcctgtt ccagatgacc gttaagcgag gcgcgtaatg
     1981 cgtcgtcggc gatcagcgtc tcgccaaacc attgtccggc atgagcgatg cgctgcttca
     2041 cctttgagtc ttcggcgttg atatctgttt ttaaccactg gcgcagatcc gcccagatct
     2101 cgccgagata gcggttaaac gcctcatctt ccttcagata acttttaata ttttctgccc
     2161 gggcagccat ttccggatca tgtttaagct tatcgatcag cttatacgtc gcacgatcga
     2221 aggcatgacg aatctgatgt gcgcggtcgt gactgatatc atccagcaga gaattcaccg
     2281 cgtcggagac cagttcagcg ctgtgttctc ccagccattc ggtcggcaga atcttcgctt
     2341 ttaacggatg ctcggtttcc agccagcgta tgatctgtct ggcgataaat gttcgggagc
     2401 tgtcacgttg taacagggcg ataagctggg cgatcagcgt atcgagtaac acctggtgac
     2461 gatcgttttt ggtcatgctt tccagcatca gggcgctggt gccggaaaga tccactttat
     2521 caatcgcctt atgtaccgct cgcttgagca gccgctgaat acgggcgtca tcggttagtt
     2581 ccagaaagcc gctcataatt tgcagcagat gctgcccgac ccggctggcg ttgtccggct
     2641 ggctgaacca gtttccaata agcagcgcgg gttcatggcg gcggattagc gcgatcagcg
     2701 actgcgtatc aaggaacttc tcctgtacaa attgcccaag attttcgccg attcggtctt
     2761 tgttacgggg aataatcgcc gtatgtcgtg aaataaacgg aatgggaatg cggcgaaaca
     2821 gcgccaccac ggcaaaccag tccgccagcg cgccaaccat cgccgcttcg gcaatagctt
     2881 ttacgctcag cacccaaaaa ctgggcggca ggaaaagcgt ggtcacaaac gtcgcggcgg
     2941 ctatcagcaa cagtgagagc gccaggcgtt tggcgcgttt gagttcggcg attttattca
     3001 tagggttaag gatagagcca gacggcagga acgtgcaaaa aatatcagat gatcctgtgc
     3061 cggataagcc tctatccggc agagtgttta cttctcagcg gccagttctg ccgcctcatg
     3121 ctggcgcacg cgctgtaata atgtcgccag ggtgaagacc acaatcaccc cggccaccgc
     3181 tgccagcagg tgaaacggca gtctcccgcc gtgaaaccac agccagcggc caacttcgac
     3241 cgacaccgcc atcaccgtca gaatcaccat gttcagcgag gccgaaaccg tcccttttgg
     3301 caagttgttg gagaaaagcg tgaagcgaaa cagcgtcggg aaaatcattc caatgccgaa
     3361 cgcgtacagg ctggtgccca gcacagacca aagccagacg tgcggcagaa gaagattacc
     3421 gagaagcaat gtcgccagcc cgcttaactg gattggtacg gcgcgccaga taaaacgcgg
     3481 tcgggttgga tctttcacca ggcgcacaac gatcatattg gccacgatca ccgcgccgaa
     3541 tactggcacc tgcgcccagg cgaattgcga agtactcatc ccgccggcat cgatcaggat
     3601 caccggcgac accgccaccc agctcatcat cgggatgtag ctcaacgaca gcgtcgccgc
     3661 cccggtgaga aaaatcgggt tgcgaaacac attacgaaaa tcgcgcagta cgctcaccgc
     3721 gctgaacggc accgcgccgc gttgcaccgt ttctggcatc gccagcagca ggccgcacaa
     3781 cgccaacagt cccatcaccg caataatacc gaacagtacc ttccagtgaa cgaagtgcat
     3841 cagcgcggcg ccggagagcg ggccgataac cggagcgacc agcacaatgg aggtaataat
     3901 cgccatcagc ttaatggctt tggtttgacc gaaagcctcc tgtaccgtga cgtagccgac
     3961 cgttgcgata aagcaaatgc tggtgccctg cacaaaacgg gcaaccagaa actgcgtcat
     4021 tgaggtcgtc aacagcgtag ccgcgcaggc gagagtaaaa attaatgcgc ctgcaatcag
     4081 cactggccgg cggccaatcc tgtcggatag cggccccaga agccattgca acgccattcc
     4141 tcccgccaga tagagactga ccgaggccgg cgcaagactg acgtcagcat taaaatcgcg
     4201 cacgacgtta atgatgccag gctgaatcag atccgtcgtc agataggcgg caaaatcgta
     4261 caaaatcagc gccatcggga aaaataacgt tgtggcgcgt tgggagaaaa actgaataat
     4321 ccgttgcata aaaaatgcgc tccatgtcgg agaaccccat gatgggacag cgaaactcaa
     4381 taccgtcatc gtgacgtcag gcaggcgatg gaaacagcgg ctgcggatgt actgaatttc
     4441 atgtaatcaa aaacgctgcc ggtgaaaaca cagacaggaa gagacgcgtt ctgaatctcg
     4501 tcagaacgtg tggcgattac agataacaat cagcacatca cacctcggga aatttacgtt
     4561 gcacggaaaa tatacacatt aagtgtaatt aaattttgat gttaatcaaa agagtttgtc
     4621 tggttaataa agataaaggc agggcgcgca ggctggtatt ttgcgtgttc agttccgaaa
     4681 atgcatgtgc attacagata acaggattta tctttcgtcg cgcctcgcaa tgctgaaaag
     4741 gtacggatga gaaaggaatt ttcaggaggt agagtcgcag catcctggtt ttgggtgacg
     4801 gagcgccatg aaaaaatcga cgacctcaac accgcatgat gcggtgttta aaaccttttt
     4861 gcgccacccg gaaaccgccc gcgattttat ggagattcat ctgccggtgt cgttacgcca
     4921 gctttgcgat ctgcggacgc taaagctgga gcccggcagc tttattgaaa aaaatctgcg
     4981 agcctattat tccgatgtgc tttggtcgct gaaaacgcgc gagggcgacg gttatatcta
     5041 tgtcgtgatt gaacatcaga gcacgccgga tgcgcatatg gcgtttcggc tgatgcggta
     5101 tgcgatggcg gcaatacaac agcatctgga tgcggggcat aagcatcttc cgctggtggt
     5161 gccgatgctg ttttatcacg gtgttgatag cccgtatcct ttttcgctgt gctggctgga
     5221 tgagtttgcg aacccggaag tggcaagaag actctatgcc gctgcctttc cgctggtcga
     5281 cattacggtg gtatcggatg atgacattat gcagcaccgc cgcattgcgc tgctggagct
     5341 catccaaaaa catatccgcc agcgcgacct gctgggactg gttgaacgga ttgcttcgct
     5401 gttagttact ggttgcgcta atgacaggca gcttaaagcg ctgtttaatt atcttatgat
     5461 tcagcacgga catacgcctc gtttcaccac gtttattcgt gatgtggtag ggcatgtccc
     5521 gcacactaag gagagactga tgacgctgat agagaggatc cgcgcagcgg atcgcagaaa
     5581 aggggaacgg caaggaagac agctcggtct ggaggaagga ttagcagaag gattagaaaa
     5641 agggctggaa aaaggtcagc atgttgccgc attgcgtatc gccagacaga tgctggcgga
     5701 cggacttgac cgcgagactg tccagcggtt caccggcctt acggctgaag agcttcagga
     5761 tgttagtcac taacgcggct ccagtctgaa tgttgcaggc ccggtgccca ccgggcaacg
     5821 cgctctataa ttatcgttga taaccgtacg aatataccga actttaccga tagcgccagc
     5881 catctctact acccttattg ttctgagcgg catttccggc tgccttaatg acgataacaa
     5941 ggagacatgt gatatggctt accagacagt gaatcctgcc aataatcagc tcattaaaga
     6001 gtatcccccg cacacggacg cggatattga agccgcgctg caaaaagctg acgcgctcta
     6061 tcactccgac tggtccaggg gagagattga ccaacgtttg ccggtactgc ataagctggc
     6121 tgacttgatc gacagccgtg ttgaagaact ggcaaaaatc gccagccagg agatgggcaa
     6181 gctcatcgag caaagccgtg gcgaagtcaa actctgtgcg cagatcgctc gctattatgc
     6241 ggataacgcg aagcagtttc ttgtcccggt gccttataaa accgagtttg gcgacgcgtg
     6301 ggtagaacat catccgattg gcgtcatcat ggctgttgag ccgtggaact tcccgtacta
     6361 tcagttgatg cgtgtgctgg cgccgaacct ggccgctggt aacccggtgc tggcgaaaca
     6421 tgccagcatc gtaccgcact gcgccgagac atttgcccat ctggtgcgtg aagccggcgc
     6481 gccggatggc gcatggacca acctgtttat ttcctccgat caggtggcga atatcatcgc
     6541 cgacccgcgc gtgcagggcg cggcgctgac cggatctgaa aaagcgggga gcgccgtggc
     6601 ggcacaggcg gcgaagcaca ttaaaaaatc gacgctggaa ctgggcggga acgatgtgtt
     6661 cgtcgtgctg gacaatgccg atcttgagaa agcggtgaaa attggcgtgc aggcacggct
     6721 cactaatgcg gggcaggtat gtacggcggc gaagcgcttt atcctgcatg agaaaatcgc
     6781 cgatcaattc ctcagccagt tcaccgaggc gttcaggaag gtgaaggtgg gggatcagat
     6841 ggacgcttct accgaactgg ggccgctgtc gtcgaaagat gcgctggaaa cattgaccag
     6901 acaggtcgag gaagcggtga aaaatggcgc gacgctgcac gttggcggca agccgctgga
     6961 aagcaaaggc aacttctttg agccgaccat tctgacccac attacgcgtg acaacccggc
     7021 gtactttgaa gagttcttcg gcccggtggc gcagatgtat gtggtgaaag acgatgatga
     7081 ggcggtaaaa ctcgccaacg attcccacta cggccttggc ggcgcggtgt ttagtcagga
     7141 tattgagcgc gctaaacgca tgtgcctccc ggattgaaac cgggatggtt tatatcaact
     7201 ggctgaccga caccgcagcg gagctgccgt tcggcggcgt taagcgttcg ggcttcggac
     7261 gcgagctatc ggatctgggg attaaggagt ttgtgaacca gaagctggta gtggtacgcc
     7321 gctaatccct gttgcccctc tgaaaacggg aggggcctgg cttttttgca gcgaaggacg
     7381 cagatcttaa atcagaacga aataaacgaa caaaacaccc tcaatcgccc tccttattta
     7441 tccacgttgc actaaccgtg ctttttatcc cggtattgtt tgtacagaca ttcatgatgc
     7501 ccgcattttc tgttctatgc ggaggctggt atggaatttt acgagaaccg ccccagacaa
     7561 ccattcattg gctatgtgca gctcagacgg gcgctaaaaa ggtggtggct gcgtaagcgg
     7621 gcctgtcagg cgctgcgacg aatgagtgac gagcagttaa gggatattgg gttggaaagg
     7681 aaggatgtgg aatagtgaat ctattcaagg gcaatagtaa gtaaaggatt ttatgat
//
LOCUS       DAJVSD010000208         7729 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.208, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000208 DAJVSD010000000
VERSION     DAJVSD010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7729)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7729)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7729
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.208"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            1..1204
                     /locus_tag="OQP62_003561"
                     /pseudo
     CDS             1..1204
                     /locus_tag="OQP62_003561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459433.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
     gene            1216..1479
                     /locus_tag="OQP62_003562"
     CDS             1216..1479
                     /locus_tag="OQP62_003562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000595917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="HCS1723005.1"
                     /translation="MIKRKWNLLLLLGFSFASVCQAGDDIDALYSRIAQKDVQALNEL
                     KALAKDNNAQALAELGFIYEYGVAVPKDTIQAIKYYEQACHVE"
     gene            1531..2685
                     /locus_tag="OQP62_003563"
     CDS             1531..2685
                     /locus_tag="OQP62_003563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001150187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HCS1723006.1"
                     /translation="MQDDVLAKELADKTSKADIDTDAQTVTRLIADEIDTAKQAAESD
                     ITQRSRFIETLRQYAGGGSAMAARITRLGYSKADILHLAELWAQERDPELNFIVGSLY
                     DSGFVEVDDKEARSLQWFRKAAELGQADAQNILGYFYLNGKRGIKRDLQKGGQWYELA
                     AAQGNVDALINLGEIYYSGTRVPLDYARAFEFFERAAKMGKSRALNYLAWMYTNGQFV
                     DTDCRKAAELFAQGRTSFADDPHFQVTCEKDRQARAEAVAMREKNLPKLTFNRDRVFG
                     ASQGSGYACELEFVVKTDRVSSIENLRVSLALKNKAGAMSQQVIAFEPFGLNMQNRNL
                     QGYKSDTLRESTLQPIYQPEFCDVDSYSVTAVTGIVNGKEMDILKAGIFI"
     gene            complement(2733..3623)
                     /gene="cyoE"
                     /locus_tag="OQP62_003564"
     CDS             complement(2733..3623)
                     /gene="cyoE"
                     /locus_tag="OQP62_003564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HCS1723007.1"
                     /translation="MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLV
                     GVSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGLISPGVSLVYATLLGIAGFMLLW
                     FGANPLACWLGVMGFVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGDFDS
                     GAAILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVIKGISVAKNHITLYIIAFAV
                     ATLMLTLGGYAGYKYLVVAAAVSVWWLGMALRGYKVEDDKVWARKLFGFSIIAITALS
                     IMMSVDFMVPNSQNLLTYVW"
     gene            complement(3635..3964)
                     /locus_tag="OQP62_003565"
     CDS             complement(3635..3964)
                     /locus_tag="OQP62_003565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit IV"
                     /protein_id="HCS1723008.1"
                     /translation="MSHSTESGGASHGSVKTYMTGFILSVILTVIPFWMVMTGAASPA
                     VILGSILAMAVVQILVHLVCFLHMNTKSDEGWNMTAFIFTVLIIAILVVGSIWIMWNL
                     NYNMMMH"
     gene            complement(3964..4578)
                     /locus_tag="OQP62_003566"
     CDS             complement(3964..4578)
                     /locus_tag="OQP62_003566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit III"
                     /protein_id="HCS1723009.1"
                     /translation="MATDTLTHATAHAHEHGHHDAGQNKIFGFWVYLMSDCILFSILF
                     ATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMHKNNKSQVISWL
                     ALTFLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVL
                     MVQVARRGLTSTNRTRIMCLSLFWHFLDVIWICVFTVVYLMGAM"
     gene            complement(4568..6559)
                     /gene="cyoB"
                     /locus_tag="OQP62_003567"
     CDS             complement(4568..6559)
                     /gene="cyoB"
                     /locus_tag="OQP62_003567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002444673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit I"
                     /protein_id="HCS1723010.1"
                     /translation="MFGKLSLDAVPFHEPIVMVTIAAIIVGGLAILAAITYFGKWTYL
                     WKEWLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQI
                     FTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNLSL
                     GVGEFAQTGWLAYPPLSGIEYSPSVGVDYWIWALQLSGIGTTLTGINFFVTILKMRAP
                     GMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYI
                     NLIWAWGHPEVYILILPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHH
                     FFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMYQGRIVFHSAMMWTIGFIVTFS
                     VGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNE
                     TWGKRAFWFWIIGFFVAFMPLYVLGFMGMTRRLSQQIDPQFHTMLMVAAAGAALIALG
                     ILCQLIQIFVSIRDRDQNRDLTGDPWGGRTLEWSTSSPPPFYNFAVVPHVHERDAFWE
                     MKEKGEAYQQPGQYEEIHMPKNSGAGIVIAAFATVFGFAMIWHIWWLAIVGFAGMIIS
                     WIVKSFDEDVDYYVPVPEVEKLENQHFDEITKAGLKNGN"
     gene            complement(6570..7526)
                     /gene="cyoA"
                     /locus_tag="OQP62_003568"
     CDS             complement(6570..7526)
                     /gene="cyoA"
                     /locus_tag="OQP62_003568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit II"
                     /protein_id="HCS1723011.1"
                     /translation="MRLRKYNKSLGWLSLIAGTALLSGCNSALLDPKGQIGLEQRSLI
                     LTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIF
                     LAVLTWKTTHALEPSKPLAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTP
                     VYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGM
                     KFKAIATKDRAEFDQWVAKAKQSPNTMNDMAAFEKVAMPSEYNKVEYFSSVKPDLFKD
                     VINKFMGHGKSMDMTQPEGEHSSHEGMEGMDMSHAESANSKG"
BASE COUNT         2063 a         1874 c         2031 g         1761 t
ORIGIN      
        1 gcgaaagata gcgctcaggc caataagtat gctaaaaaaa tgaatctgga taatttattg
       61 attgagcaag aatatattga caagttttcg caagaaattt acgtggcgaa agcattggcc
      121 gatatggata aatcgcagcg ggcggcattt attagtatac taattcatgc tctaaataat
      181 agacccgaga gcgatgcgct ttttttagtc gtatcggatt taatcaggaa aaaacgttcc
      241 gccttgctac gctatggggg caggacggcg atccacaaat ggattatcaa ctggggttac
      301 tcacccttaa tgatttctct ggccattatg tggatgagcc ttataaagcc aggccggcct
      361 cgttgaaatg gtttcgcgcc gccgcggaaa aaggcgtcgt tgaggcccaa tctctcttgg
      421 ggggtattta ttcgggggga gagggcgatg agtgggggat taagccagac attcaggaag
      481 cgcaaaaatg gtatgggcag gcgtctgagc agggggacag cgatgcacag attgcgttag
      541 gtaaaatcta ttattctggt gcaacagggc gcactgatta cgctaaagcg ctggcattat
      601 ttacgcaggt tgaaaatgat ggtactaatt cgcgctcaac gatgccgttg agttggatgt
      661 attataacgg tttaggtact gcacctgatt gtgataaagc ctggtcgtat tacaagaaag
      721 catctcgata tgtaggtaag aaagttgagg aaaaaatatt tttaagtaag tgcgcagcgg
      781 atattcagag tcgaaaaaaa acgcggatgc tttacccaaa gtaaccctaa aaaaagagag
      841 tgttttctct cgcgggataa cggctaaacc gaaagaatgt gcattaattt ttcagattgg
      901 cacagataaa atccgtaaca tggcgaattt gcatattaca cttgaactga aaaatgctga
      961 tggaatggca actgaggaaa cgttgatgat tccgccattc ggtttgaata ctctggggat
     1021 agatatgcaa aatcatgatg ttgatcctct cattacccca tacgatctcc cactgtatac
     1081 gcaagatttt tgtcacggga tcggcgatat ccattttacg ctgaaatccg ctacggcaac
     1141 gattaacggt aagaatgtcg atttgctgaa agctgacagt gtgcactttt tagataaaga
     1201 ataagggaat gaaaaatgat aaagcggaaa tggaatcttt tgcttctgct tgggttttct
     1261 ttcgcatcgg tatgccaggc aggtgatgat attgacgcgt tatatagccg tattgcgcag
     1321 aaagatgttc aggcgctaaa tgagctaaaa gcgttagcca aagataataa tgctcaagcg
     1381 ctggcggagt tggggtttat ttatgagtac ggcgttgccg tgccgaaaga tacgatacag
     1441 gctatcaagt attatgagca ggcttgtcat gttgaataac cctatggctg ctacaacgct
     1501 cgttattttt atctgcatgg cctgggggtg atgcaggatg acgttttggc aaaagagctt
     1561 gcggataaaa ccagtaaagc agatatcgat actgatgcgc agacggtgac gcgcctgata
     1621 gccgacgaaa tagatacggc aaagcaagcc gcggaaagcg atattactca gcgttcccgg
     1681 tttattgaaa cattacgcca gtatgccggc ggcgggagcg cgatggccgc gcgcatcacg
     1741 cgcctgggtt attcaaaggc ggatatcctg caccttgcgg agctgtgggc gcaggagaga
     1801 gaccctgaac ttaactttat cgttggtagt ctctatgact ctggttttgt tgaggtcgac
     1861 gataaagagg cgcgttcgtt gcaatggttc cgcaaggctg ctgaattggg ccaggctgat
     1921 gcgcagaata tactcggtta cttctacttg aatggaaaac gagggattaa gcgcgatctg
     1981 cagaaggggg ggcagtggta cgagttggcg gctgcgcagg gtaatgtcga tgcgctcata
     2041 aatcttggtg agatctatta ctccgggacg cgggttccgc ttgattacgc tcgggcgttt
     2101 gaattctttg aacgggcggc gaagatgggc aagtctcgcg ctttaaacta tcttgcctgg
     2161 atgtatacca acggtcagtt tgtcgacacg gactgccgga aggcagcgga gttgtttgct
     2221 caggggcgaa caagttttgc agacgatccc cattttcagg tgacctgcga aaaagaccga
     2281 caggcccgtg ctgaggctgt ggcaatgcgt gaaaagaatt tgccgaagtt aaccttcaat
     2341 cgtgatcgtg ttttcggtgc gagtcagggc agcggctatg catgcgagct ggagtttgtc
     2401 gtcaaaacgg atagagtcag cagtatagag aatttacgcg tctcactggc gctgaaaaat
     2461 aaggccgggg cgatgtcaca gcaggttatc gcatttgagc cttttgggct aaatatgcag
     2521 aaccgcaatt tacaagggta taagtctgat acgctacgtg aatcgacatt acaacctatc
     2581 tatcagccgg aattttgcga tgttgatagc tatagcgtaa ccgctgtgac ggggattgtt
     2641 aacggtaaag agatggacat tcttaaggcg ggaattttta tttaaacgcg aaaagaaaga
     2701 tggcgtatca agcgatacgc catctaaagt ctttaccaga cgtaagtcag cagattctgc
     2761 gaattcggca ccataaaatc aacagacatc atgatactca gtgcggtaat cgcaatgata
     2821 gagaagccga acagcttacg cgcccagacc ttatcatctt ccactttgta accgcgtagc
     2881 gccatgccga gccaccaaac gctgaccgcc gcggcgacca ccaggtattt gtaaccagca
     2941 taaccgccca acgttagcat tagcgttgca acggcaaacg caatgatgta cagcgtgatg
     3001 tggtttttag cgactgagat tccttttatc accggcagaa ccgggatatt ggccgcctga
     3061 tagtccttaa agcggaaaat ggcgatggcg taagagtgcg gcatctgcca gaggctgaaa
     3121 atagccaaca gaatcgccgc gccgctgtca aagtcgcccg ttacggcgca gtagccaatc
     3181 accggcggcg ctgcgccgga gagcgaacca atcagcgttc cgtagacgga gtgacgcttc
     3241 atgtacaagc tgtacacgcc aacgtagacc acgaagccca tcacccccag ccagcaggcc
     3301 aaaggattag cgccaaacca cagcagcata aagccagcaa tacccagcag ggtggcgtat
     3361 accagcgaga cgccaggaga aatcaggcct ttgaccagca cccgattctt ggtcctttcc
     3421 atcttcctgt cgatatccct gtcgatgtag ttgttaaata cacaacccga cgccacaacc
     3481 agtgacaccc cgaccagcgt atagatgaac aggggatagt caatgctgcc ctttgaggcc
     3541 agcagaaatc ccccgatcac cgagatcagg ttgccaaaga tgatgcctgg tttcgttact
     3601 tgcaggtatt gcttaaacat catactcgcc gctcttagtg catcatcatg ttgtagttga
     3661 ggttccacat aatccagatg gagcccacaa ccaggatggc gatgatcagc acggtaaaga
     3721 tgaaggccgt catgttccag ccttcatcag atttggtgtt catgtgcagg aaacacacca
     3781 gatgcaccaa aatctgcacc actgccattg ccaggataga tcccagaata acggccggag
     3841 aggcagcgcc ggtcatcacc atccagaatg gaataaccgt caggatgacc gacaggataa
     3901 agccggtcat gtacgttttt acgctgccgt gggatgcgcc gccgctctcg gtagaatgac
     3961 tcattacatc gcccccatca gataaacaac agtgaatacg caaatccaaa tcacatccag
     4021 gaagtgccag aacaggctca ggcacatgat gcgggtacgg ttagtgctgg tcagaccgcg
     4081 acgggcgact tgcaccatca gcaccgccat ccagatcaaa ccggaagtga cgtgcagacc
     4141 gtgcgtgccg accagcgcga agaacgcaga caggaagccg ctgcgatccg ggcccatacc
     4201 gttaacaatc aggtgatgga attcatagat ttccatcccg ataaatccgg caccgaacaa
     4261 gaaggtcaac gccagccagg agataacctg gctcttgttg ttcttgtgca tggcgatcgc
     4321 cgccatgccg taggtaatgg agctaaataa cagcaggaag gtttcaacca gaacgaacgg
     4381 cagttcgaaa atgtccttac ctgtcgggcc gccagcggtg ccgttcacca gaacggcata
     4441 ggtagcaaac agaatagaga acagaatgca gtcgctcatc aggtagaccc aaaatccgaa
     4501 gattttgttc tggcctgcgt catggtgccc gtgttcgtgc gcgtgggcag tcgcgtgcgt
     4561 taaagtatca gttgccattt ttcagccctg ccttagtaat ctcatcgaaa tgctggtttt
     4621 ccagtttttc gacttccggg accggcacgt agtaatccac atcttcatca aagcttttta
     4681 caatccagct gatgatcatg cctgcgaaac ccactatcgc cagccaccag atatgccaga
     4741 tcatggcgaa gccaaatacc gtcgcgaagg cggcgataac aataccggca ccgctatttt
     4801 tcggcatatg aatctcttca tactgtccag gctgttggta cgcttcgcct ttttctttca
     4861 tttcccagaa ggcgtcacgt tcgtgaacgt gcggcacaac ggcaaagtta tagaacggcg
     4921 gcggagacga ggttgaccac tccagcgtac ggccacccca tgggtcgccg gtcagatcgc
     4981 ggttctgatc gcggtcgcga atagaaacga agatctgaat cagttggcac aggataccca
     5041 gcgcaatcag cgcggcgccg gcggcggcaa ccatcagcat cgtatggaac tgcggatcaa
     5101 tttgctggct gaggcgacgg gtcatgccca tgaagcccag tacgtacagc ggcataaagg
     5161 ctacaaagaa accgataatc cagaaccaga aggcgcgttt accccaggtt tcgttcagct
     5221 tgaagccaaa cgccttcggc caccagtaag tcatacctgc gaagcagcca aacaccacgc
     5281 cgccgatgat cacgttatgg aagtgcgcaa tcaggaacag gctgttgtgc aggacgaagt
     5341 ccgcgcccgg taccgccagc agcacgccgg tcataccgcc gaccgagaag gtcacgataa
     5401 agccgatggt ccacatcatt gcggaatgga agacgatacg gccctgatac atggtgaaca
     5461 accagttgaa gatcttcacc ccggtcggga tggcgataat catggtggtg ataccgaaga
     5521 aggcgttaac gttcgcgccc gcgcccatcg tgaagaagtg gtgcagccaa acgataaacg
     5581 acagtacggt aatacagacg gtcgcccaaa ccagcgaggt atagccgaac agacgtttac
     5641 gcgagaaggt cgctgcgatt tcggagaata ccccgaagac cggcagaatc agaatgtaca
     5701 cttccggatg gccccaggcc caaatcaggt tgatgtacat catcatgttg ccgcccatat
     5761 cgttggtaaa gaaatgggtg cccagatagc gatccagggt cagcaacgcg acggtaaccg
     5821 tcagaatcgg gaaagaggcg atgatcagta cgttggcgca caaagaggcc caggtaaaga
     5881 ccggcatctt gaacattgtc atacccggcg cacgcatctt caggatcgtc acgaagaagt
     5941 tgataccggt taacgtcgta ccaatacccg agagttgcaa cgcccatatc cagtaatcga
     6001 ccccgacgct gggactgtac tctattcccg atagcggcgg ataagccagc caccctgtct
     6061 gcgcgaattc acccacgccc agcgagaggt taaccagaat aacgccgaca acggtgaacc
     6121 agaagctcag gttgttcagg aaagggaaag caacgtcgcg cgcgccgatc tgcagcggaa
     6181 ccaccaggtt catcagaccg ataacgaagg gcatcgccac gaagaagatc atgattacgc
     6241 cgtgagcggt aaagatctga tcgtagtggt gcggcggtag aaaacccgct tcgcctgcgg
     6301 aggcaagcgc ctgctggcta cgcatcatga tggcatcggc gaaaccacgt aacagcatca
     6361 caatcgcgac gatgatatac atgataccga ggcgtttatg gtcaaccgac gttaaccact
     6421 ctttccatag gtaggtccac ttaccgaagt aagtaatcgc tgccagtatc gccagtcccc
     6481 cgacgataat tgcagcgatc gttaccatga cgataggttc atggaacggt actgcatcca
     6541 gtgataattt tccgaacatc ttatcttcct caacccttgg agttggcgga ttccgcgtgg
     6601 ctcatgtcca taccttccat tccttcatgc gagctgtgct caccttcagg ttgggtcatg
     6661 tccatgctct taccgtggcc catgaatttg ttaataacgt ccttgaacaa atctggtttc
     6721 acgctggaga aatattccac cttgttgtac tcgcttggca tagccacttt ctcgaacgcc
     6781 gccatatcat tcatggtgtt cggagactgc ttcgcttttg cgacccattg gtcgaattct
     6841 gcgcggtctt tggtggcgat agctttaaac ttcataccag agaagcccgg gccgctatag
     6901 ctggcggaga tgccatcgta ggttccgggt tcgttggcga tcagatgcaa acgtgtttgc
     6961 ataccggcca tggcataaat ctggctaccc agacgcggga taaagaagga gttcatcacg
     7021 gagttggagg tcactttgaa ataaaccggc gtgttcgccg ggaaggcgat ctcgttgacg
     7081 gtggcgatac cctgctccgg atagatgaag aaccatttcc agtccatgga aaccacttcg
     7141 atggtgatcg gtttttcgtc atgcgccagc ggcttgcttg gttcaagcgc gtgcgtggtt
     7201 ttccaggtca gtacggcaag gaaaatgatg attaagatag gcaccgtcca gaccacggct
     7261 tccactttat tggagtgtga ccagttcggg ctatacttcg catccttatt actcgcacga
     7321 tacttccagg caaaaccaac agccatcaag atggcgggaa taacgacgat caacatcagg
     7381 ccaaatgccg tcagtatcag cgaacgttgc tccagtccaa tctgtccttt gggatccagc
     7441 agcgcagaat tacagccact gagtaatgca gtgcctgcaa ttaatgacaa ccatcccaaa
     7501 cttttattgt atttcctgag tctcatttaa cgacctcaat tccacgggac ctggtggcgt
     7561 ttaaagtgta ggggcatttt acggtaaggt tacattactg taaacatgat tggttctgtg
     7621 ttaccaagtt ctgccgcgcg tgtcacatat gttgccaagt atgtcgaaat aactttaaga
     7681 cactgttgaa actttgcgtt ataacggatg aggtctgtaa gtgggatgt
//
LOCUS       DAJVSD010000209         7676 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.209, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000209 DAJVSD010000000
VERSION     DAJVSD010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7676)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7676)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7676
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.209"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..726
                     /gene="vexB"
                     /locus_tag="OQP62_003569"
     CDS             <1..726
                     /gene="vexB"
                     /locus_tag="OQP62_003569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001023498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Vi polysaccharide ABC transporter inner membrane
                     protein VexB"
                     /protein_id="HCS1723012.1"
                     /translation="LMSRDIKTRYNGNLLNYMMVLAVPLVWISITVISFQYLNRSVPI
                     STDDISFVIAGILPYLLFRYTITATMRTHSFSTSLAVVSQVKKRHVIFSLAAIEFVNA
                     VIIYIIISLINFLIFSRWEAQKPFLIFEGMVIAWLLGLSFGYFCDALSERFPLVYKAV
                     PVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMFEGYHSLYLEPFYP
                     LAFSATLFLAGLIFHLICDTENH"
     gene            752..1447
                     /gene="vexC"
                     /locus_tag="OQP62_003570"
     CDS             752..1447
                     /gene="vexC"
                     /locus_tag="OQP62_003570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000467404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Vi polysaccharide ABC transporter ATP-binding
                     protein VexC"
                     /protein_id="HCS1723013.1"
                     /translation="MFGLLGCTRYFESDKGPRVVLDKTDFVMGYHEHIGILAAPGSGK
                     TTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEF
                     SHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLR
                     MQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFEQYQSN
                     QATIQTEDYSFDI"
     gene            1470..2774
                     /gene="vexD"
                     /locus_tag="OQP62_003571"
     CDS             1470..2774
                     /gene="vexD"
                     /locus_tag="OQP62_003571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000431675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Vi polysaccharide ABC transporter inner membrane
                     protein VexD"
                     /protein_id="HCS1723014.1"
                     /translation="MENSERIKKWKEERAKVAQESRASRLQQKEDERALRQTEKSADA
                     KSHHNPDAGWSATDADSVRRASLVIKERRVQQAKQSLRRLFLYIALPLLVIMLMSWIL
                     TSHFYSADATFIVQTDASQDNFSGTSFFGAGNKMSEGFQVREFILSKEMMDRMEKELG
                     FLSYFAQDDIALFSRFHAPLGINDDPYRYYLSKVSVAVDIQQGMLRLNVKARSAKQAE
                     FFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDID
                     PKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQR
                     NRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRERQYLLIIS
                     QPMAESDTTRYADGTKWLLFFVLLGITYLVTSLLITIRRMRE"
     gene            2794..4764
                     /gene="vexE"
                     /locus_tag="OQP62_003572"
     CDS             2794..4764
                     /gene="vexE"
                     /locus_tag="OQP62_003572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000052242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Vi polysaccharide transport protein VexE"
                     /protein_id="HCS1723015.1"
                     /translation="MSLHSTFKKISPTTLLKQEDWEGLCLYFSQHPEKVRDSAGNEQN
                     IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKL
                     LAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKE
                     LQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLA
                     VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA
                     LQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY
                     TAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEE
                     GLLALDGQISAVNLPPERLDWAWEVAGRQSGIERDEWERRAKWGYLADNFLLDWLECR
                     GEQADEPMYRLADISHVEQFFQRLQLDQRGCIIVSAHLGAMYAGPMILSLLEMNSKWV
                     ASTPGVLKGGYGERLISVSDKSEADVVRACMQTLHSGQSLVVAIDGALNLSAPTIDFF
                     GQQITYSTFCSRLAWKMHLPTVFSVPIWKNRHIHFVLERMVDPLKFESQLSFTERWKE
                     NYLQCVTRILQSDPENLRLSGGIWRNIIRRDS"
     gene            complement(5066..5812)
                     /locus_tag="OQP62_003573"
     CDS             complement(5066..5812)
                     /locus_tag="OQP62_003573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HCS1723016.1"
                     /translation="MDIPRIFTISESEHRIHNPFTPEKYATLGRVLRMKPGMSVLDLG
                     SGSGEMLCTWARDYGITGTGIDMSPLFTAQAKLRAEELGVSERVHFVHNDAAGYVADE
                     QCDIAACVGATWIAGGVAGTMNLLAMSLKPGGIMLIGEPYWRQVPPTEEIAQACGVSS
                     VADFLTLQGLVASFDERGYDLVEMVLADQEGWDRYEAAKWLTMRRWLEDNPDDDFVQE
                     VRKELTVAPKRHVNYTREYLGWGVFALMAR"
     gene            complement(5812..6702)
                     /locus_tag="OQP62_003574"
     CDS             complement(5812..6702)
                     /locus_tag="OQP62_003574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001681808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HCS1723017.1"
                     /translation="MDISTLISSSGRLQLSAAESKIPWEELAFSQRMLENHLSQDHDW
                     ASRRQIVIEQQVGWIARQLLVGARILDIGCGPGLYTHLLAERGYCCTGVDFSPASIEW
                     ARQQAQTAGLSIDYIRQDIRTYWPETQFEFIMMTFGELNVFSATDAQTLISRCARWLV
                     PGGRLFVEVHTFDEVKRQGMAPASWQRCPHGLFLAASHLLLTENAWDEETQTSSTQFW
                     AIDENGRISRFGSQMTAWRDDEYASLLGNAGFKILSHPDSSEWPVSETFEGKLFALLA
                     EKSKSPEGRSLNTQLKKGVN"
     gene            complement(6713..6970)
                     /locus_tag="OQP62_003575"
     CDS             complement(6713..6970)
                     /locus_tag="OQP62_003575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjhX family toxin"
                     /protein_id="HCS1723018.1"
                     /translation="MNLSRQEQRTLHVLAKGGRIVHVRDASGRVTSVECYSREGLLLA
                     DCTLAVFKKLKTKKLIKSVNGQPYRINTTGLNNVRSQPDNR"
     gene            complement(7272..7382)
                     /locus_tag="OQP62_003576"
                     /pseudo
     CDS             complement(7272..7382)
                     /locus_tag="OQP62_003576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310150.1"
                     /note="with lsrACD is involved in the transport of
                     autoinducer 2 into the cell; incomplete; partial in the
                     middle of a contig; missing N-terminus and C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autoinducer 2 ABC transporter substrate-binding
                     protein"
BASE COUNT         1918 a         1814 c         1900 g         2044 t
ORIGIN      
        1 ttgatgtcac gcgatatcaa aacacgctat aacggtaatt tactaaacta tatgatggtg
       61 ctggccgtac cactggtatg gatatccatt accgttattt cttttcaata tttaaatcgc
      121 tcggtgccaa tatccactga cgatatcagt tttgttattg cagggatatt accgtatctg
      181 ttatttcgtt ataccattac cgcaaccatg cgaacccatt cattctctac atcgttagcg
      241 gttgtctcgc aggttaagaa aagacatgtg attttttctc ttgccgcaat cgaatttgtt
      301 aatgcagtta tcatttatat tattatttca ttaattaact ttcttatatt ctcccgttgg
      361 gaggcccaaa aaccgttcct gatttttgaa gggatggtta tcgcatggct tctggggtta
      421 tcgtttggtt acttttgtga cgcactgtct gaacggtttc cgctggtcta caaagctgtt
      481 cctgtgatgc taagaccgat gtttttgatt tcggctgtct tttatacggc gaatgaattg
      541 ccttattcat tattaagcat attcagctgg aaccctctac tacatgctaa tgagatagtc
      601 agagaaggta tgtttgaggg gtatcactcc ttgtaccttg aaccttttta ccctctggca
      661 ttttccgcaa cgttattcct cgcgggcctc atttttcacc tgatttgtga cactgaaaat
      721 cactgacttt agcttcagga gagacgcatt cgtgttcggt ttattaggtt gtacacgcta
      781 ttttgagtct gataagggcc cgcgggtggt ccttgataaa acagattttg tcatgggcta
      841 ccatgagcat atcggtattc tggcggctcc tggttcaggc aaaacgacgc taaccaggtt
      901 gctgtgtggc ctggatgctc ctgatgaggg ggattttatt gggctacggg gtgatgcgct
      961 cccactgggg gcaaactctt ttattctgcc agggttaacc ggtgaggaga atgcgcgaat
     1021 gatggcaagt ctatatggcc tggatggcga tgagttttca catttctgtt atcaattgac
     1081 ccagcttgaa cagtgctata ccgacagggt gagtgaatat tctgtcacga tgaaaacgca
     1141 tctggcattt gccattaatt tactgcttcc ctgccgcctt tatattgctg atggcaagct
     1201 gtacaccggg gataatgcca cacagttgcg tatgcaggcg gcgctagctt gtcagctgca
     1261 acagaaaggg ttgattgtgc taacgcacaa ccctcggctt attaaagaac actgtcatgc
     1321 gtttggcgta ctgctgcatg gaaaaattac aatgtgtgaa gatttagcgc aggcaactgc
     1381 gctttttgaa caatatcagt caaatcaggc gacgattcaa actgaagatt attcctttga
     1441 tatataatta gtaaatatac ggatagagtg tggaaaattc agaacgtatt aaaaaatgga
     1501 aagaagaaag agcgaaggta gcacaagaaa gccgagcctc gcggctacaa caaaaagagg
     1561 atgaacgcgc ccttcgccag acggaaaaat cggccgatgc aaaaagtcat cataacccag
     1621 acgccgggtg gtctgcgacg gatgctgatt ctgtccgtag agcgtcatta gttattaaag
     1681 agcgacgtgt tcagcaagcc aagcaatcgc tacgtcggct ctttctttat attgctttgc
     1741 cgctgctggt tattatgctt atgtcgtgga ttttaacatc gcatttttat agtgcggatg
     1801 ccacctttat tgtgcaaact gatgccagcc aggataattt ttctggaaca tctttctttg
     1861 gtgcaggcaa taagatgtcg gagggctttc aggttcgcga gtttatactt tcgaaagaaa
     1921 tgatggatcg gatggaaaaa gagctcggtt ttttatctta tttcgcgcaa gacgatatcg
     1981 cattattttc ccgcttccac gcgccgctgg gtattaatga tgatccttat cgttactatt
     2041 tatcaaaagt ctcggttgct gtcgatattc aacagggcat gctgcgttta aacgtgaagg
     2101 cacggagtgc gaaacaggct gagttttttg cccagcgcat tctgtctttt gctgaacagc
     2161 acgttaatac cgtttcagcg cggatgcaga aggaacggat tttgtggctg gaaaatgatg
     2221 ttaaatcggc ccaagagaat ctgggggcag ctcgacttga attgctaaaa atacagcata
     2281 tacaaaaaga tattgacccg aaggaaacca taaccgctat ttatcaatta attgctggct
     2341 ttgaaacgca gttggcggag gcgaaagcgg aatacgcgca attaatggtg aatggtttgg
     2401 atcagaaccc ccttattcct cgcctgtcgg ccaaaatcaa ggtactggaa aagcagatcg
     2461 gcgaacaacg taaccgcttg tcaaataagt tagggtcgca aggctcttca gaaagcctgt
     2521 ccttatttga agatcttcgc ctgcagagcg agatcgccaa agcacgctgg gaatctgcct
     2581 tacagacctt acagcaaggg aagcttcaag ctctacgtga gagacagtat ttgctgatca
     2641 tttctcaacc gatggctgag tctgacacca ctcgctatgc cgatggaaca aagtggttac
     2701 tgttcttcgt gttgctgggc atcacgtacc tggtgacttc tctcctgata accatcaggc
     2761 ggatgcgtga ataaggctga gtaaggaaat ataatgagct tgcactctac atttaaaaaa
     2821 atatcgccaa ccaccctact caaacaagag gattgggagg ggctatgcct ctatttcagt
     2881 cagcatcccg aaaaagtgcg agatagtgct ggaaatgagc aaaacattat tctcttcgct
     2941 atcgcgtgtt tgcgtaaaga tgaaacagat gtcgggctga ctttgttgtc tgaccgtgtg
     3001 ctgacggcaa agaatggccg tgatttatta cgacgctggg ttatttcgcc actggcatca
     3061 tctcaaccgg acgctgtact acaggtagtt aataaactgc tggcggtgaa tgtgtgccag
     3121 ccggaggatg tcctgctggt cgcgagcgtg ctgcttaaga gtaaacaata tgcgactgtt
     3181 gctgacttag ccgagcaggc atggctcgct ttttcgggaa atagccaaat ttttgccctc
     3241 catttgcgca cactggtact gatggataaa gagttacagg caatctcgtt ggccagaaca
     3301 caggcgcagg aagttccccc acggggagat atgattgcga cctgcctcag tttcttaaat
     3361 aaaagccgcc taccagaaga tcatgacctg gcccgcgcat tgctcccttt cttcgcgtta
     3421 gaaaggcagg agtcggcggg gctggcggtt gatacgctgt gcgctgtcgg taaatatcag
     3481 gaagccattc agacagggga atccgcatta gcccgtgggt tggatggtgc agcactgcgt
     3541 cgtagcctgg ggcttgctta ctatcaatcc ggtcgcagtc gggaagcgaa gcttcaggcc
     3601 gctgagcatt ggcgtcatgc cctgcaattt aactctgata atgtacgtat cgtgaccctg
     3661 tatgccgatg ccttaatcag aacgggtcag aatgagaaag ccattccgtt actgcagcag
     3721 tcgctcgcga ctcatcctga tcttccttat gtcagagcaa tgtatgcccg agcactgcgc
     3781 caggttgggc aatacactgc tgccagcgat gagtttgtac aactggcaag ggaaaaaggg
     3841 gtgacgagta aatggaaccg ttatgccgcg gcggcattgt tacaggcggg gaaaacaagc
     3901 gaagcggaaa gcgtctttga gcactatatt caggccagag caagtcatct gcctcaatca
     3961 ttcgaagagg ggctgctggc gcttgatggg caaatatctg ccgttaatct accgcctgag
     4021 cgccttgact gggcatggga agttgccggc agacagtccg gtatcgagcg cgacgaatgg
     4081 gaacgccggg cgaagtgggg ctatcttgct gataattttc tcctcgactg gcttgaatgt
     4141 cggggagagc aggctgatga acctatgtac cgattggccg acatatcgca tgtcgaacag
     4201 tttttccaac ggctacaact cgatcagaga ggctgcatta ttgtatcggc tcatctgggc
     4261 gcaatgtatg ccgggccgat gatcctgtcc ttactggaga tgaacagcaa atgggtggct
     4321 tccactcctg gcgtgctcaa agggggctac ggcgagcgat tgatttcggt tagcgataaa
     4381 agcgaagcgg acgtggtcag ggcctgtatg cagaccttac atagtggaca gtcgcttgtg
     4441 gtggcaatag acggcgcgct gaatttgagt gcgccgacta tcgacttttt cggtcagcaa
     4501 atcacctact ccacattttg ctctcgtctt gcctggaaaa tgcatttgcc taccgttttc
     4561 agtgttccga tatggaaaaa caggcatatc cattttgtgc ttgagaggat ggtcgatccg
     4621 ctgaaatttg aaagccagct ttcatttacc gaacgttgga aggagaatta tctgcagtgt
     4681 gttacccgga tcctgcaaag cgatccggaa aatctgcgtc tttccggtgg gatttggcga
     4741 aacattatac gtagggatag ttaataagcg atttaattgc ggtagatgaa aatttgtact
     4801 tcagagctga aaatgtggta ttaacccaga tatcagtctg caagttgcaa gtcaccatca
     4861 gtagcacaac gagtcccctc aaacaggctg tctgccatgc ctttgactct gttatatatt
     4921 tttcagcttc tgtcagcctt gcatctcata aaacattcct gacatttata ttagggccct
     4981 atcccaattc gtgtttttga acattgcccc tccctgaatc atattccccc cggcagcttt
     5041 aatctaccag ggggatcctt attcgctagc gtgccattaa cgcaaagaca ccccagccta
     5101 agtattcacg tgtgtaattg acatggcgtt tgggcgcaac agtcagctcc tttcggactt
     5161 cctgtacaaa atcatcatca gggttatcct ccagccagcg acgcatggtt agccatttcg
     5221 ccgcctcgta tctgtcccag ccttcctggt ctgccagaac catttccacc agatcatagc
     5281 cccgctcgtc aaaagaggct acaaggccct gcagggtgag gaagtctgcc acggatgaga
     5341 cgccacaagc ctgagcaatc tcttccgtcg gaggtacctg acgccagtat ggttcaccga
     5401 taagcataat tcctcctggc ttcagactca tggccagaag gttcatcgtc cctgcgacgc
     5461 cgcctgcaat ccaagttgcg ccaacgcagg ccgcgatatc acattgttca tccgcgacgt
     5521 aacccgccgc gtcattatgc acaaaatgaa cgcgttcact gacaccgagc tcttctgctc
     5581 gtaacttggc ctgcgcagta aaaagtgggc tcatatcgat gcctgtaccg gtaataccgt
     5641 aatcgcgtgc ccaggtgcaa agcatctcac ccgagccgct gcccaaatcg agaacgctca
     5701 tgcctggttt catgcgcaac acgcggccca gcgtggcgta tttttccggc gtgaacgggt
     5761 tatgaatgcg gtgttcgctt tcgctgatag taaaaatacg tggaatatcc attaatttac
     5821 tccttttttt agctgtgtat tcagggaacg cccttccggg gattttgatt tttctgccag
     5881 cagagcaaag agcttgccct caaaagtctc gctgaccggc cactcgctac tgtccgggtg
     5941 tgatagtatt ttgaagcccg cgttaccgag caaactggca tattcgtcat cgcgccaggc
     6001 cgtcatctga ctgccaaaac ggctaatgcg accgttttca tctatcgccc agaactgcgt
     6061 tgagctggtc tgcgtttctt catcccaggc gttttccgtc agcagcagat gagatgccgc
     6121 aaggaacagt ccgtgcggac aacgctgcca gctcgccggc gccataccct gacgtttaac
     6181 ttcatcaaaa gtatgaactt caacaaacag cctgccgcct ggtaccagcc accgggcaca
     6241 gcggctgata agggtctgag cgtcagtggc actgaaaaca tttagctctc caaacgtcat
     6301 catgatgaac tcgaactgtg tctccggcca gtaggtgcga atatcctgcc ggatgtagtc
     6361 aatgctcaga ccggcggttt gcgcctgctg acgagcccac tcgatggatg ccggtgaaaa
     6421 atcaacgccc gtacagcaat atccacgctc cgccagcaag tgggtgtata aacccgggcc
     6481 gcagccgata tccagaatgc gtgcaccaac cagtagctga cgggcaatcc acccaacctg
     6541 ctgttcaatt acgatctgtc tgcggctggc ccagtcatga tcctgcgaca gatggttttc
     6601 cagcatgcgc tggctaaacg ccagctcttc ccagggtatt ttactttcag ctgcagacag
     6661 ctgcagccga ccggaggaag aaatgagagt actgatatcc ataatgctct ccttaacggt
     6721 tatcgggctg tgagcgaacg ttgttcagcc cggtggtgtt gatgcggtaa ggctgaccgt
     6781 tgacggactt gatcagtttt ttggttttga gctttttgaa aacggcgaga gtacagtcgg
     6841 cgagcaacag cccttcgcgg ctgtagcatt caacagaggt aacgcgacca gaagcatcgc
     6901 gaacgtgcac aatacgtcca ccttttgcga gcacatgtaa ggtacgctgt tcctgacggg
     6961 ataaattcat actggaaaac ctgttaatca acatgagcaa aaacgagcca acatccgcag
     7021 atgttcgcgt aaagtttaag cgcagcgata atcagtccgt tctgagcaga acagaaaact
     7081 gattatctga tgattacatt ctccagcatc aaagcctcgg tgagagttga aaggtattta
     7141 cggcatgaat aataacaact gttttttgta atgaaaacac aggagagaaa aaatgtgatg
     7201 cgggaggaaa tttcagaagg taatgctggc gacttttatt gccagtaagt gaacttgtca
     7261 gcccgcatta ggttctgatc ggtcgcggtc ggactggaaa agaagaaggc cactttggct
     7321 ttctcttttt tgacctcatt tgcggccata tcgaccagta tgccgcctaa ctgtgcaggg
     7381 cttgtgggag acgtcggtgt tctggtagct cagaccggtt atcccccgct aaaacttatc
     7441 tgcgtacgct tatatcagta ctgtgggctc tgcattgttc agtattaaag actactttgg
     7501 agtaaacttt aattcccgtt gcttcagcca cttatcagaa aaatcctgtc atcgatttga
     7561 acgtggaaac ttatacctgc atactgtata tacatacagt tattttgagg tataacatgc
     7621 tgcactttat tcccatagca tccattcctg aagcactgac aatccctttg tttaca
//
LOCUS       DAJVSD010000210         7654 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.210, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000210 DAJVSD010000000
VERSION     DAJVSD010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7654
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.210"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(181..2466)
                     /locus_tag="OQP62_003577"
     CDS             complement(181..2466)
                     /locus_tag="OQP62_003577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723019.1"
                     /translation="MVDRYFELAQAPFDPVRIWQWIGNLNFHHQCQADQSKSVQVLRE
                     NDTLRQGIIAYVFGPLTDRNEIFNTRVEKFDGHLHSHSGLHLWRNDYKFILNLAFEAD
                     NVDLWASFLVNHQRYRNKEEQGPDDLRAQMRRHALSKPAFMREWARYNNAMKLSGQKS
                     QLRRFRHSRKMKRRDRKQREIHARNIKFVNENRDIVERGRHWRCLLRFAELVLMHPER
                     IELEFGDEKLVRTALRNCLDFITPEVPTLPELAALQCESKYRHSETVLYAACLEILRA
                     EGNLECVNIELLTALRTNIHRGYHSVSKEERDALQTEIDRLIFPYSESAEKYLRQYVE
                     PQLTQPCPHPEIGVLSRQEVFRHSRAKLSIEWLRRFPDVSLNSVDTLFEIAAQYGDRE
                     NLKEIIAERCSEMMSGWPNPKENEDIERKRIFWLVREFYFMENIADTYWAWLKSDKNN
                     LLHFYERSGRMNRSEHRAWPELASIKVEAILDAFIEHWPRVDLPDSWGSDSPKEEKAY
                     RFLTDLIWSINSDTSDDAIPVLDRLLNDPRFTNLHKELQSIYADQIRKKALRDFEPPT
                     PDEIVQRLDCDSVVTVEGLRQLVLQELHDFQKAIDGGEFNSADRFYEKNERLDEVKST
                     EIIAERLSLRLQPQGIAITPEHQLKGQNRSDFTASKLIGGRRRLLVTEVKGQWHRELY
                     SAASAQLYDRYSIHPDAEQQGIFLVIWFGESETVAGRKTHGIKTAQELKISIEAVLPA
                     DLRDLIDVFVLDVSRNGGHQR"
     gene            complement(2547..4220)
                     /locus_tag="OQP62_003578"
     CDS             complement(2547..4220)
                     /locus_tag="OQP62_003578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723020.1"
                     /translation="MNSIFYLERHFTHGDRTYTETELLAASTHVVVLAEPGGGKTELM
                     KSLARKLNTTVLNASVFAYAGADKENSALVIDAVDEVARIDQSGIHKLLALARTSKPT
                     RVIMSSRSSEWGQACTSIFEKFLGFSPMVVRLKEFDQDEQHAIFKHHAPEEDFFAFQT
                     EVTRFSLDMLLPNPQFLKMFTDAYLESGRRFADKRSIFALAVERLAKEVNPDIPKAPV
                     SLSVAQKISFSAEVYAKLLLSGAEGVSTIDVTANRMYPMLPALFSSSAACYDILSTQL
                     FKPGDKEDQHRPVHKIVAEYCAADYLIKRIADPVDVLTLPKCLPVIAPNGIARDELRG
                     LLGWMAALGNRSVQGSIIELDAYAVLANGDPSQLERSSKRQLLYQLKEIEAADPYFRR
                     SDFWRRFSAAGFFTQDVVEEIKPLLTMGNDGHLRDLILELLADSPVNSQLVPELSQLT
                     LNPNESEHIRTLASRCLLNIKEYDCIGALAVLIFEASNISLNIAANVIEVTGPEKFDH
                     RYLSGFFRVCANLYPGHEEQFERVVGLVILLKSSFPVFHCILSNFFWTN"
     gene            4767..5228
                     /locus_tag="OQP62_003579"
     CDS             4767..5228
                     /locus_tag="OQP62_003579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000246267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723021.1"
                     /translation="MATTLTQTHPLLSVPFNAATDFTVLAEHCKQFAEILIEHDDPTL
                     KMALCGRLNACLQLLQPSLLDPIPEHMMDSLIVDTLPTRSPRFDPECTELCNYCLALT
                     QVLTGQGLLPETRNYLGCLLYDLIHYFSDEITAPRWLRTADGVKFIDEVTA"
     gene            5225..5446
                     /locus_tag="OQP62_003580"
     CDS             5225..5446
                     /locus_tag="OQP62_003580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000193311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1723022.1"
                     /translation="MTQQDWHPADIIAGLRKRGTSLAALSRQSGLASSTLANALIRHW
                     PKGERLIAEALGIAPEQIWPSHYRKPENY"
     gene            complement(5839..6033)
                     /locus_tag="OQP62_003581"
     CDS             complement(5839..6033)
                     /locus_tag="OQP62_003581"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723023.1"
                     /translation="MSESSHELAQLSCLVQVEKAACVTFPLYAVKVTHWTGAVSENLS
                     LVQFYDHAAAKPAVFAGRSP"
     gene            6303..7085
                     /locus_tag="OQP62_003582"
     CDS             6303..7085
                     /locus_tag="OQP62_003582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000511749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase domain-containing protein"
                     /protein_id="HCS1723024.1"
                     /translation="MGILAQEMKRLAQQAGGSHKTVHDRIKLAQGITKRSLQNEMAAV
                     RCILKQAGRDRLAQSERLNNRSLGLSGASRNGTKLAITPEHYRDVLETARVKDPGMAA
                     ALELSKLMGLRSQEAVQSVQSLKTWRQALDRGDTRLTVVFGTKGGRPRETIILDAVAV
                     RKALDNALAVAEDRHDRLIDKPDLKTAMKYWHSQASRLGLTGAYSPHSLRYAWAQDAI
                     RHYLAQGFSEKEALAMTAMDLGHGDGRGRYVAQVYGRKDGGD"
BASE COUNT         1941 a         1845 c         1857 g         2011 t
ORIGIN      
        1 atatatcaaa tcatggttat attatgttta aaacataaga gctacaaagc aaacaaaata
       61 aaggaatcca gttttccaga tggccaatgg tattcacttg gtggcatggt aatacttacg
      121 gtgttttgtt ggctctcgct aattaacccg atctctggtt aattagcgag agctatattg
      181 ctaacgttgg tggccaccgt tccgtgaaac atctaaaacg aaaacatcaa ttaaatcacg
      241 gagatcagcc ggtagtactg cttcaatact aatttttagc tcctgagcgg ttttaattcc
      301 gtgggttttg cggccagcaa cggtttcgct ttctccaaac catatgacaa gaaagatacc
      361 ttgctgttcg gcatcagggt gaatggaata acggtcatag agttgggctg aagcagcaga
      421 atataactct ctgtgccact ggcctttgac ttccgtaacc agcagccgtc ttcttcctcc
      481 aatcaattta gatgctgtga aatcactcct gttttgccct ttcaactgat gctctggagt
      541 tatagcgata ccctgaggct gaagtcttaa actcaggcgc tccgcaataa tctctgtgga
      601 ctttacctca tcgaggcgtt catttttctc atagaagcga tcagccgagt taaattcccc
      661 gccatcaatc gctttctgaa aatcatgaag ctcctgaaga actaactgac gcaggccttc
      721 aacggtaacg actgaatcac aatcaaggcg ttgaactatc tcatctggcg tcggtggttc
      781 aaaatctctg agtgcttttt ttctgatctg atcagcgtat atgctttgca actctttatg
      841 tagattggtg aaacgtggat cgttaagaag acggtccagc actggtattg catcatcgga
      901 agtgtccgag tttattgacc aaatcaaatc agtcaaaaag cggtaggctt tctcttcttt
      961 agggctatca ctaccccagc tatcaggtag atcaactcgc ggccagtgtt caatgaaagc
     1021 gtctaaaatg gcttcaactt taattgaggc gagttccggc caggcacggt gctcgcttcg
     1081 attcatacgt ccagaacgtt cataaaaatg cagtaaatta tttttatcag attttaacca
     1141 tgcccaataa gtatccgcaa tgttctccat aaagtagaat tcacgtacca gccagaatat
     1201 tcgtttgcgt tcaatatcct cattttcttt cggattgggc cagcctgaca tcatctctga
     1261 gcaacgctct gcaataatct cttttaaatt ctcacgatcg ccgtattgag cggcaatttc
     1321 aaaaagtgta tcgactgaat taagggatac atcgggaaaa cgacgaagcc attcaatgga
     1381 aagtttagcg cgtgaatgac gaaagacctc ttgtctactt aataccccga tttcagggtg
     1441 agggcatggc tgagtgagtt ggggttcaac gtactgtcgg agatattttt cagcactttc
     1501 actataagga aaaatgaggc ggtcgatttc agtctgtagc gcatcacgtt cttctttcga
     1561 aactgagtgg tatcccctgt gaatgttcgt tcttaaggct gtaagcaact cgatattgac
     1621 gcattcaaga ttgccttctg cacgtagaat ctccagacag gcggcatata aaaccgtctc
     1681 agaatgcctg tatttagatt cgcattgcag tgctgctagt tcgggtagag tgggaacctc
     1741 gggagtaata aaatccagac aatttcgcaa cgctgtccga accagtttct cgtcaccaaa
     1801 ttctaattca attctttccg gatgcatgag cacaagttct gcaaaacgca gcaggcaccg
     1861 ccagtgacga cctcgctcta caatatctct gttctcatta acaaatttta tgtttctggc
     1921 gtggatctct cgttgctttc tgtcacggcg tttcattttt cggctatgtc tgaatctccg
     1981 gagttggctt ttctgcccgg ataatttcat tgcattgttg tatcgggccc attcacgcat
     2041 aaatgcgggc ttggagaggg catgccgacg catttgtgcc cgcaaatcat cagggccttg
     2101 ctcttccttg tttctgtaac gttggtggtt gacaaggaaa ctcgcccaca ggtcaacgtt
     2161 atctgcttca aaagccagat tgaggataaa tttatagtca ttcctccata aatgaaggcc
     2221 tgaatgtgag tgcagatgcc cgtcgaactt ttctactctt gtgttgaata tttcattacg
     2281 atccgttaaa ggcccaaata cataggcaat gatcccctga cgaagtgtgt cattttcccg
     2341 aagcacttgt accgatttgc tttgatcggc ctgacattgg tgatgaaaat tgagattacc
     2401 tatccattgc cagatcctca caggatcaaa tggtgcttga gccagttcaa aatagcgatc
     2461 gaccattgaa ccgacaatct tgcttattcc attacgacaa tcacattcat aggattcttt
     2521 cccacaatgg caataaaggt tacaggttaa ttcgtccaga agaagttcga gagtatgcag
     2581 tgaaaaacag gaaatgagct ttttaataaa ataacgaggc cgaccactct ttcgaattgt
     2641 tcttcgtgac cgggatagag attcgcacag acgcggaaga atccagagag atatcggtgg
     2701 tcgaattttt cgggccctgt gacttcgatg acgttggctg caatattgag tgaaatatta
     2761 ctggcctcaa aaatcaaaac agctaaagcg ccaatgcaat cgtattcttt gatattgagt
     2821 aagcatctgc ttgctagggt tcgaatatgt tcagactcat tgggatttaa cgtaagctgg
     2881 ctcaattcag gcaccaactg actgtttact ggagagtctg ccagaagttc taaaattaaa
     2941 tcacgtaaat gaccatcatt gcccatcgtt aaaagaggct ttatttcctc aacaacgtct
     3001 tgcgtgaaaa aaccagccgc gctgaaccgg cgccagaaat cactccgacg aaagtaagga
     3061 tctgcggctt caatctcttt gagttgatag agaagctgtc gttttgatga gcgttcaagc
     3121 tgcgatggat cgccgtttgc gagtaccgca taggcgtcaa gctcaataat ggatccctgt
     3181 accgacctgt tgcctaatgc tgccatccat ccgagcagac ctctcaactc atctctggca
     3241 ataccgttcg gtgcaataac aggcaagcac tttggtaaag tgaggacatc cacaggatcg
     3301 gctattcgtt taatgagata atccgctgcg cagtattcag cgacaatctt gtggaccggg
     3361 cggtgctggt cttccttatc gccgggcttg aaaagctgag ttgacaatat gtcgtaacag
     3421 gccgcactgc tgctaaacaa cgctggcagc atgggataca tccggtttgc cgtcacgtcg
     3481 atggtgctga ctccctctgc gcccgacaac agaagtttgg cataaacctc ggcagaaaat
     3541 gaaatcttct gtgcaactga aagagataca ggggctttcg ggatatctgg attgacttcc
     3601 ttagccagtc gttcgactgc taaagcaaag attgaacgtt tgtcagcaaa tcgcctgcca
     3661 ctttctaaat aggcatcggt gaacattttc agaaactgag ggtttggtaa caacatgtct
     3721 aaactaaacc gtgttacttc ggtctggaat gcaaagaagt cttcttctgg cgcatggtgc
     3781 ttaaagatag cgtgttgctc gtcttgatcg aattctttca gcctcacaac catcggggag
     3841 aaaccaagaa atttttcaaa aatgctggta caagcctgtc cccattcgct tgatctactt
     3901 gacatgatta cgcgagtcgg ctttgatgtt ctggcgagag caaggagttt atgaatacct
     3961 gattgatcaa ttctggcgac ttcatcaacg gcatcaatta ccagtgcgct attttcttta
     4021 tctgctcctg cgtaagcaaa tacgctggca tttaagacag tagtgttcag tttccgagcg
     4081 aggcttttca tcagttccgt tttcccgccg ccgggttctg ctaacacaac aacgtgcgtt
     4141 gatgccgcca gcaactctgt ctctgtgtag gttctgtcac cgtgcgtaaa atgacgttca
     4201 agatagaaga ttgaattcat cgttacaaaa tttttcgtat tgaatagccc aaatattcca
     4261 gcagaaagga aagctgcgcc tgagttttct tgcttatatc agagatagta cggcatttat
     4321 tctttgttgg tgggatgttt tatcaactgt tgtacacatt atacaactta ttgacattaa
     4381 tcacatttcg ccacagcgat gtgcgggcta acagataata aacctttcct gttatggcgg
     4441 tcttgtctgt ggaattttta ttttctgcga tctgcttcca gaacccctca cttgctgcta
     4501 ttggctaatt gcggtatctt ttacacgcac ctgcaaattc aggtgccggg attagcctcc
     4561 tgattgactt catcgacgac acaaaggcgc gtctgcgctt tttttgtgtc gtgcgttctg
     4621 ctacatctca atggtgggcc gggcgggggc gctgcaaagc gcgccggtgt cgatgaggcc
     4681 ggtaaggcta accccgtccg gttccaccac catgagatta gcctctccgg tggtggtgat
     4741 aaacactgct catcggagga tgccttatgg ctacgaccct cacccagaca cacccgctac
     4801 tctccgttcc cttcaatgcc gccacggatt tcaccgtact ggcagaacac tgcaaacagt
     4861 tcgccgaaat cctgatcgaa cacgacgatc ccacgctgaa aatggcactt tgcggcaggc
     4921 ttaatgcctg tctgcaactt cttcagccct cactgcttga tccgatcccg gagcacatga
     4981 tggacagcct gatcgttgat acgctcccca cccgctcacc gcgtttcgat cccgaatgta
     5041 ctgaactttg taactactgc cttgccctga cgcaggtgct gacgggacag gggctattac
     5101 cggaaaccag aaattacctt ggctgcctgc tgtacgacct gatccattat ttttctgatg
     5161 aaatcacggc cccgcgctgg ctgcgtaccg ctgacggcgt gaagtttatt gacgaggtga
     5221 cagcatgacg caacaggact ggcatcccgc cgacattatc gcggggttga gaaaacgggg
     5281 cacctcgctg gcggcgctgt cccgtcagtc ggggctggcg tcctcaacgc tggcaaatgc
     5341 gctgataagg cactggccca aaggcgaaag gctgattgcc gaagcgttgg gtattgcgcc
     5401 agagcaaatc tggccttccc actaccgcaa gcctgaaaat tactaaatcg tctctcccga
     5461 tcttctgatg gctttgctgt cagaagatcg ggagaaggca agcgaagcgc ggcagttcag
     5521 gctcgcaaat aatctttttg acgtacaaac agtttttcct ttctgcgcca gcggcactgg
     5581 cgtagtctcc ctcctgctcc atgctgtcgt cgacagcgcc caacgcttca caacctgaaa
     5641 gaagcgcctg ttatcaggac ggttgatccg tttaccggtg cagacctctg caaacaccgg
     5701 gtcgcagaac atcgcgacgg aggcccgagt tttaacacta tatgtccttt actgcgccag
     5761 cctgctggtc tgaatctgct ccgcgccgaa attttcccgg ctaacctgta tctgctgaca
     5821 ccctctgcgc cttttacctt acggactgcg gcctgcaaag acagcaggct ttgctgctgc
     5881 gtggtcgtaa aactgcacca acgataaatt ttcagacact gcaccagtcc agtgcgtcac
     5941 tttaaccgcg taaagcggga aagtgacgca cgcagccttt tcgacctgca ccagacaact
     6001 caactgcgcc agctcatggc tggattctga cactgccttt tcaggccatt ttacccataa
     6061 ggagaacatg agccgatacc gaggcggatc cggacgatcc gggggataac ccgcacaagc
     6121 gggcggctgc tctgagagca caaccgaagc cccaccacac ctcaacggct gccgccccgg
     6181 cgctcaggta tcgttcgcag ccccgacaaa aaaacagggg ctatcggcct gtgcgccggg
     6241 gaaagcggta tcagtgttgg ttttttggga tgagtttgcg gcaatcatga aagggggaaa
     6301 atatggggat tctggcgcag gaaatgaagc ggcttgcaca acaggcgggc ggcagccata
     6361 agaccgttca cgatcgcatt aagctggcgc agggcatcac gaagcgttcc ctgcaaaacg
     6421 agatggcggc ggtacgttgc attctgaaac aggccgggcg tgacaggctg gcgcagagtg
     6481 agcggctgaa caaccgttct cttggtctgt ctggcgcatc ccgcaacggt acaaagctgg
     6541 ctatcacgcc ggagcactat cgtgacgtgc tggagacagc ccgtgtaaaa gatccgggga
     6601 tggcggcagc gctggaactc tcaaagctga tgggattacg ctcgcaggag gcggtgcaga
     6661 gcgtacagtc gctgaaaacg tggcggcagg cgctggatcg tggtgacacc cgcttaaccg
     6721 tagtgtttgg caccaaaggc gggcgacccc gcgagacgat tattcttgat gcggtagcag
     6781 tcagaaaagc gctggataat gcgctggctg tggcagaaga tcgtcacgac aggctgatag
     6841 ataagccgga tctgaaaacc gcgatgaaat actggcacag tcaggcgtca cgtctcggct
     6901 taacgggcgc atattccccg cactcgttgc gctatgcgtg ggcgcaggat gcgatccgtc
     6961 attatctggc gcagggattt agtgagaagg aagcgctggc aatgacggcg atggatttgg
     7021 ggcacggcga cggacgcgga cggtatgtgg cgcaggttta cgggagaaag gatggtggtg
     7081 attgatagct tcagacttgc aatatgaggt tatccatcgg ttttcgtaca aaaaattttg
     7141 ggggcaaaat tttttgtacg gtttcctttt aataacgatg tttctaaatg gtctagccta
     7201 ttaacaggct tctggtgcag cattccgtta tttttttctg gtgattgtgc cagcaaaagg
     7261 gaaaaggcca gataaaggta aagggcggct aagggtaaca gcgccagacc ggaaaaggcc
     7321 aaagggctta aaaggataaa gctggcgcag atcggtattt atccggtggt atctggcgca
     7381 atcctgacat agacaggcga cggcagactg gtgcagataa acgatgacac tgaactggtg
     7441 cagttatggc gtatcggcaa atcagtttct ggtgcagatt gtctggctgc tatcgcctga
     7501 aattattctc ctcaaataat tttctatatt tacctattga ttcgcgaaat attgatagat
     7561 tttcgtacaa aattattcta cgtagaataa ttttgtacgc tttcctatta acaaccaaaa
     7621 aatgcaaggt aattcctttc aatacaaaaa gcag
//
LOCUS       DAJVSD010000211         7654 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.211, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000211 DAJVSD010000000
VERSION     DAJVSD010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7654
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.211"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            223..708
                     /locus_tag="OQP62_003583"
     CDS             223..708
                     /locus_tag="OQP62_003583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
                     /protein_id="HCS1723025.1"
                     /translation="MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLT
                     ERTSGRAHVGEMSLTKFVDLATPVLNEYCCSGRLIRTAVLTLCRNDDGKMRSLIVYTL
                     TNVLISQLSVSGGAGGKPVETMSLNFTKIKWQITAEKSDGAQQESRASVWDLAMDQIG
                     K"
     gene            708..1088
                     /gene="iraD"
                     /locus_tag="OQP62_003584"
     CDS             708..1088
                     /gene="iraD"
                     /locus_tag="OQP62_003584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraD"
                     /protein_id="HCS1723026.1"
                     /translation="MMTPTIPVALFDRLLVEGISPHELVRRKLICLFNSCAVPGGETL
                     PPLLTRGMPEWHEVNVGDKRVLNWFCRELRAAILRYEPSINMLKVSVKDAYHQTLALS
                     LEAMLQDESEPLRLEIAYSNGRWR"
     gene            complement(1224..2708)
                     /locus_tag="OQP62_003585"
     CDS             complement(1224..2708)
                     /locus_tag="OQP62_003585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent phenylacetaldehyde dehydrogenase"
                     /protein_id="HCS1723027.1"
                     /translation="MSDVTLLAEVTTFLRQRHGQFIAGERQAGNGTNFSVTNPATGKI
                     IADVVSTTPAQAKEAMQSARRAFDVWRKMPTLQRGALLLKLADTLAAHREELAQLESV
                     CSGKTIMLSRGLELDQSVAFLRYFAGWAGKITGETLNVSLPSMGEERYTAFTQRQPIG
                     VVVGIVPWNFSIMIAIWKLAAALVCGCTIVIKPSEYTPLTLLRVAELAKEAGFPDGVI
                     NVVNGAGGEIAQQLIAHPDCAKVSFTGSVATGEKVRRSATSSGKRVTLELGGKNAALF
                     LNDLTAQAMVNGILEAGYLNQGQICAAAERFYLPQEKLDTVMTLLRQRLSEIVPGSPL
                     DEKTVMGPLANQVQLEKVLRLIQRAREEGDTIVYGGETLPGEGYFLQPTAVKVRSKNS
                     TLMHEETFGPVCSFIGYQNEKEALSHINDSPFGLAASVWSENISKALRYAEDIDAGMV
                     WVNMHTFLDPAVPFGGMKGSGIGREFGSAFIDDYTELKSVMVRY"
     gene            2870..4171
                     /locus_tag="OQP62_003586"
     CDS             2870..4171
                     /locus_tag="OQP62_003586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HCS1723028.1"
                     /translation="MNTKIDALNYYGATKKYPLHFPALQDDIDADVVIIGGGFSGINT
                     ALELAEQGITNVVVLEARHLGYGGTGRNGGQVMAGIGHDIEAVKKYVGAAGMETLFKI
                     SNLGAGIIRERIRKYHIDADFVPGYGYLAYNQRQLKTLQQWEKEFKAATPEDDIELYT
                     GKDVQQVIGSDVYCGVLKHMGGGHVHSLNLLLGSAQAANSLGVKIFEYSPVVEVSYGK
                     TVRVRTAMGSVKAAKLLWACDSFLNNLEPEIYKKTLVTYSYQVSTEPLSSELVERISP
                     LRGAFSDIRPVINYYRLTKENRLLFGSATRFLEYTPHDFAAWNRTLLTEVFPYLKDVK
                     IDFAWGGPMACSANLFPQIGTLREHNNVFYVQGYSGFGVTPSHIVCKILAEGINGGSE
                     RYRLMSSIPHATIYGRDSLRLLLVSAGKLIHQTAGFWKGRN"
     gene            4186..4559
                     /locus_tag="OQP62_003587"
                     /pseudo
     CDS             4186..4559
                     /locus_tag="OQP62_003587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462042.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
     gene            4768..6267
                     /locus_tag="OQP62_003588"
     CDS             4768..6267
                     /locus_tag="OQP62_003588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HCS1723029.1"
                     /translation="MFKNRLASHLERGVIGFPTTLASSVGLIMASPVILTVTSGFGSG
                     GDTFALAVLLAFIMMQAQITTFAEAATLIPTTGSVYDYISCGMGRFFAITGALCAYLI
                     VHIFAGTAETILAGVMALVNFESVSEHVAMQHNTWMVGVGMVVVFGILNAIGVEVFGK
                     VEVFLTFGMWTTLTIFGLCGILLSPVTHHSGWFGAPLDVSNLSGLFGYIGMAMFMFVG
                     CELVTPMAPEIKKAHRTIPRAMALGLLAVAGCMFLYGAAINRQVNNVVVDAANHIFLL
                     DTPMAIPAFANRVMGHVGQYWLGVGLLLAGCATINTLMAAVPRIIYGMALDGALPRFL
                     TWLHPRFKTPVIAIAFGVAIPCLHAWYLNGDIDHIVPLILAAVCAWGVAYLLVTLSVV
                     ILRIRRPDLPRAYRAPWFPLPQIISSVGIIIAIINIAPPGMNSRDVLIPFGIMLGLTA
                     AYALFWTLCVQRVNPFLPLPVEEVVERAMGNYEKRNNEEMTPDVLRPLV"
     gene            6245..6802
                     /locus_tag="OQP62_003589"
     CDS             6245..6802
                     /locus_tag="OQP62_003589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3156 family protein"
                     /protein_id="HCS1723030.1"
                     /translation="MSSVPWFKNALMNMVLRDLSGWRCEKLTEHSAVLHLNAFTQVIC
                     HVQQKRLFMASIHSCEFRVKGTINYPLQGKIRAHQPGWLKRYPVIFTGSKSTAGLISY
                     LNRFPNLQQALSELDYRRFTLVLHHKEWYCSIELWAASEVVCKMPPLRRYLRLERHQR
                     VLLLSVINMINQAMNQWLQQDADAR"
     gene            complement(6907..7590)
                     /locus_tag="OQP62_003590"
     CDS             complement(6907..7590)
                     /locus_tag="OQP62_003590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR family transcriptional regulator"
                     /protein_id="HCS1723031.1"
                     /translation="MSALSTTGHNDGITLHCLQSIAQLIPLSSAVFYRVNAYLKPEAY
                     VLHNISNSTHQQYLEHFQPLDPLLPSRFGQQVITVATMTPGICARHRHYYHEFMLPNH
                     VCDMIEIFIRRGHRIIAGISLMRDIPFSSEERLRAQAVQPLLGLAIHDSLQEDNDLAS
                     ILTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSRTRM
                     SSVQHSLNM"
BASE COUNT         1851 a         1808 c         1976 g         2019 t
ORIGIN      
        1 cctcaattgt atttggccac agcgggccaa aaccctctat tgcattgcaa ccagcggaat
       61 aacgttcatc agacgtgggt aaacgttggc aaaatccctg caaacctggc gcttttcacg
      121 ctgtgttttt tggtcgttgc gcttttaata agagtcacaa gcgttggccg ccggtattcg
      181 tctggctgct gaactgccac ctgatcaaca aggagataaa tcatggatgc gattttttta
      241 aagctcgaca atatcaaagg cgaaagccag gttgaaggct ttgaagatca gatagagatc
      301 atgtcttata gccacaatgt ggcaatgcag gtaaataacg atgttagcct cactgagcgg
      361 acttccgggc gtgcgcatgt tggtgaaatg tcgctcacca aatttgtcga cctcgccacg
      421 cctgtgctca atgagtactg ctgtagcggg aggctaatta gaaccgcggt gctgacgttg
      481 tgccgcaatg acgacggcaa aatgcggtcg cttatcgttt ataccctgac aaacgtgctg
      541 atatcacaac tcagtgttag cggcggcgcc ggcggtaagc cggtggaaac gatgtcgctg
      601 aacttcacga aaatcaaatg gcaaatcact gccgagaaat cagacggcgc tcaacaggag
      661 tccagagcgt cagtatggga tctggcgatg gaccagatag ggaaatgatg atgacgccaa
      721 ccattccggt cgcgctattc gacaggctct tggttgaggg gataagccca catgaattgg
      781 tacgccgcaa attaatatgt ttattcaact cttgcgccgt gccaggtggc gagacattac
      841 cgccgctgct cactcggggt atgccggaat ggcacgaggt gaatgtgggt gacaaacggg
      901 ttctcaactg gttttgccgt gagcttcgcg ctgctatttt acgttatgaa ccgagcatca
      961 acatgctgaa agtcagtgta aaagatgcct atcatcagac gctggcgttg tctttggaag
     1021 cgatgttaca ggatgagtct gaaccgttaa gactggagat agcctactct aacggtagat
     1081 ggcgctagta atgcaggaag gaacgccggg ccgggcgttt aacattatcc caaaagcaaa
     1141 aaaacgcagc gagcgaacct gataatcagg cagacagtcc tcctttcggt atggttgatc
     1201 tgcctgcatc attttcagga tggttaataa cggaccatga ccgatttaag ttcggtatag
     1261 tcatcaataa acgcgctgcc aaattcacga ccaatgcccg atcctttcat ccctccaaag
     1321 ggtaccgcgg gatcgaggaa ggtatgcata ttaacccaca ccatgccagc atcaatatct
     1381 tcagcgtagc gtaatgcctt agatatattt tccgaccaca cacttgcagc aaggccgaat
     1441 ggcgaatcgt tgatatgcga aagcgcctct ttttcattct gataaccgat aaagctacag
     1501 acagggccaa aggtctcctc gtgcatcagc gtactgtttt tactacgcac ttttaccgct
     1561 gtcggctgta aaaagtaccc ttcgccgggt aaagtttcac cgccgtaaac aatggtatcc
     1621 ccttcttccc gtgcacgttg aatcagacgc agcacttttt caagctgaac ctgattcgcc
     1681 agcgggccca tcaccgtttt ttcatctaaa ggcgagccgg gcacgatctc cgataaccgt
     1741 tgtctgagga gcgtcatgac cgtatccagt ttttcctggg gcagataaaa acgctctgcg
     1801 gcagcacaaa tctgtccttg attcagataa ccggcttcaa gaataccgtt gaccatggct
     1861 tgtgccgtga gatcattgag aaacagcgcc gcatttttcc ctcccagttc gagggtaacg
     1921 cgttttcctg acgacgttgc cgaacgccgg actttctcac ctgtcgcgac tgacccggtg
     1981 aaactcactt tggcgcaatc tggatgcgcg atcagctgtt gcgctatctc accgccagca
     2041 ccgtttacca cgttaattac gccatcaggg aaaccagcct ctttagccag ttcagcgact
     2101 cgcagcagtg tcagcggggt atattcactt ggtttaatga cgatggtgca gccacatacc
     2161 agcgctgcgg ccagcttcca gatagcaatc ataattgaga aattccacgg cacaataccg
     2221 acgaccacgc caatgggttg gcgttgggta aacgctgtgt atctctcttc tcccattgat
     2281 ggcagggaga cattcagcgt ttcaccggtt atttttcctg cccaaccggc aaagtaacgc
     2341 aggaaggcca ctgactgatc gagttcaaga ccgcgcgaca gcataatcgt tttacctgaa
     2401 cagacgcttt ccagttgagc taactcttca cgatgagcgg caagagtatc agccagtttc
     2461 agcagtaatg cgccgcgttg taacgttggc attttacgcc agacatcaaa cgcccgtctg
     2521 gcgctctgca tggcctcttt tgcctgcgca ggggttgtcg acacaacgtc ggcgatgatt
     2581 ttgccggtgg ctgggttagt gaccgagaag ttcgtgccgt ttccggcctg acgttcacct
     2641 gcaataaatt gtccgtgtcg ttggcgtaaa aaagtcgtta cttcggcaag taatgtcacg
     2701 tcgctcatca gaagtgcctg taggtcagga atgtacgttt ttccatctca acatacttgc
     2761 ctggaactga atatcgttcc aaagaacgtc attcttccgg acgatatttt gtaaaacgtt
     2821 accgtgctgt gatagcggtc ttggtcaagc gtgatgacaa ggtaacgcga tgaatacaaa
     2881 aatcgatgcg ttgaattact acggcgcgac gaaaaaatac ccgttgcatt ttcctgctct
     2941 gcaagacgat attgatgccg atgtggtgat cattggcggt ggcttttcag gcatcaatac
     3001 cgcgctggaa ctggcggagc aggggatcac taatgttgtc gttctggaag cccgccatct
     3061 tgggtatggc ggcaccgggc gaaacggcgg tcaggtgatg gccggtatag gtcacgacat
     3121 cgaagccgtt aaaaaatatg taggcgcagc gggaatggag acgctgttta aaatctcgaa
     3181 cctcggcgcg ggtattattc gggagcgaat tcgtaaatac catattgatg ctgattttgt
     3241 ccccggatat ggttatctgg cctacaacca gcggcagtta aaaacgctgc aacaatggga
     3301 aaaagaattc aaagccgcta cgccggaaga cgatattgaa ctctataccg gtaaagacgt
     3361 gcagcaggtt atcggttccg acgtctactg cggtgttctc aagcatatgg ggggagggca
     3421 tgtccactcg ctgaatttat tgctgggctc cgctcaggct gcgaattcgc tgggggtgaa
     3481 gatattcgaa tattcacctg tggttgaggt cagttacggt aaaactgtgc gggtacgtac
     3541 tgcgatgggc agcgtaaaag cagccaaatt gctgtgggcc tgtgatagtt ttctcaataa
     3601 tctggaacca gaaatttata agaaaacgct ggttacttat tcttatcagg tctctacaga
     3661 acctctctcc agcgagcttg ttgagcggat cagtcccttg cgcggggctt ttagcgatat
     3721 ccgcccggtg ataaattact accgtctcac aaaagaaaac cgtctgctgt ttggcagcgc
     3781 cacaaggttt cttgaatata ccccgcacga ttttgctgcc tggaaccgca ctctgttgac
     3841 ggaggtcttt ccttatttga aagacgttaa aatcgatttt gcctggggcg gaccgatggc
     3901 ctgtagcgcg aatctgtttc cgcagattgg cacgcttcgt gagcacaata atgtttttta
     3961 tgttcagggt tattccggat ttggcgtcac gccttcccat attgtatgca aaatcctggc
     4021 cgaaggaata aatggcggtt ccgagcggta tcgtctgatg agtagcattc cccacgcgac
     4081 aatttatggt cgcgacagtc tacgtctatt gctggtcagt gcgggaaaac tgatacatca
     4141 aacagccggt ttctggaaag gccggaatta accaggagaa cattaatgca cgcttttaaa
     4201 ctcaatcaac ctgttcctga attacagcca gtcgggagtg tcagcctgtt aggggcgttg
     4261 ccaacagaag gcgtccccag gtcgccgttg cgatgattta cggtaaacct gaggacgtat
     4321 ttacctgtgg actgttttca tcgacccgcg gcggtttcac tatgatttat ccctttaccg
     4381 agcacgcaac cgtgctggaa ggggaagtgg aactcactgt tgtgggtcag gaaccgatac
     4441 gtttttcacc gggcgatagt tggtttgttg aacagggaac cgaagtggca tggaaagttt
     4501 taacgccccg ttttgtaaaa cattatctgg caaacgttga aagccataaa cagggttgaa
     4561 ccctttaatt gttcgtcagt agcgttggca tcactgggga gaataacgcg ctccccactt
     4621 gctattagcg catgcgggga cggcgtcaca acgttattta ccgttatccc tcttcaggac
     4681 gatacctgtt agatgcgctg cctgccataa ataagcgtta ttccggagcg gtaatttatt
     4741 gttgtaataa tagtgaagag gttgaccatg tttaaaaaca gacttgccag ccatcttgaa
     4801 cgtggcgtta ttggtttccc cacgacgctt gccagctccg tcgggctgat tatggcaagc
     4861 ccggtgatcc tgaccgtgac cagtggtttt ggctcagggg gagatacctt tgcccttgcg
     4921 gtattactgg catttattat gatgcaagcg cagattacca cctttgccga agcggcaacg
     4981 ctcattccca cgactggctc cgtctacgac tatatctcct gcgggatggg gcgttttttc
     5041 gctatcaccg gtgcgctttg cgcttacctg atcgtacaca tttttgccgg cacggcagaa
     5101 acgattctcg ctggcgtcat ggcgctggtg aactttgagt ccgttagcga acacgtggcc
     5161 atgcagcaca atacctggat ggttggcgtc ggcatggtag tggttttcgg gatactgaat
     5221 gccattggtg ttgaagtatt tggcaaggtg gaagtgtttc ttacattcgg tatgtggact
     5281 accctgacca tcttcggttt atgcgggatc ctgttatccc cggtcactca tcattccggg
     5341 tggtttggcg caccgcttga tgtcagtaat ctttctggtc tgtttggtta tataggcatg
     5401 gcgatgttta tgttcgtcgg ttgtgaactg gtcacgccaa tggcgccgga aattaaaaaa
     5461 gcgcatcgta cgattcccag agcgatggcg cttggccttt tagcggtggc aggttgtatg
     5521 ttcctctatg gcgctgcgat taaccggcag gtaaataatg tggtggtcga tgcggcaaac
     5581 catatctttt tactggatac gccgatggct attcccgcct ttgccaatcg tgtcatggga
     5641 catgtcgggc aatactggct gggcgtgggg ttgttgttag cgggatgtgc gacgattaat
     5701 acgctaatgg cggcagtacc gcgtattata tacggcatgg cgctggacgg cgctttgccg
     5761 cggtttctga cctggttgca cccccgcttt aaaacaccgg tcatcgccat cgcattcggt
     5821 gttgcgattc cctgtttaca tgcctggtat ctgaacggtg atatcgacca cattgttccg
     5881 ctgatcctcg ctgcggtctg cgcctgggga gtagcttatc tgctggtaac gttatcggtc
     5941 gttatcttac gtattcggcg ccccgattta ccacgcgctt accgggcccc ctggtttccc
     6001 ttacctcaga ttatttcgag cgtgggtatt attatcgcca ttattaatat cgcgcctcca
     6061 ggaatgaaca gtcgggatgt acttatacca ttcggtatta tgcttggatt gactgccgcc
     6121 tatgccttat tctggacatt atgtgtgcaa cgggttaatc ctttcctccc gcttccggta
     6181 gaagaggtcg tggaacgggc gatgggcaat tatgaaaagc gaaacaatga agagatgacg
     6241 ccagatgtcc tccgtcccct ggtttaagaa cgcattaatg aatatggtgt tacgtgattt
     6301 gagcggctgg cgttgtgaaa aattgaccga acatagcgcc gtgctgcatc tgaatgcatt
     6361 tacccaggtt atctgccatg ttcagcaaaa acggttattc atggccagta ttcacagttg
     6421 tgaattcagg gtgaaaggca caatcaatta tcctttgcag ggcaaaattc gcgctcatca
     6481 gcccggatgg ctgaaacgtt atcccgtcat ttttactggc agtaaaagta ccgccgggct
     6541 gattagctat cttaatcgtt tccccaattt acaacaggct ctgagtgaac tggattatcg
     6601 tcggtttact ctggttttac atcataagga atggtattgc agcattgagc tatgggctgc
     6661 tagcgaagtg gtttgtaaaa tgccgccgct gcgccgttat ctgcggcttg agcggcacca
     6721 gcgtgttctt ctgcttagtg tgataaatat gatcaatcag gccatgaatc aatggctgca
     6781 acaggatgcc gacgccagat aatatgacat tttattgcgg catcagctca gagggtggta
     6841 ttaattcagg catatatgac atatggggaa aagacccgca attgacgcgg gttaaaaaga
     6901 acgctttcac atattcagtg aatgttgtac cgaggacatt ctggttcggg aaaccagttc
     6961 cgtgcgattt atcacttctg ttttagcaaa aatattacgt aaatgcgttt tcactgttga
     7021 gagagaaata ttcaactgac gggcaatcaa tttgttgctg gccccttcgc agaccattcc
     7081 cacaatttca cgctctttgg cggtcaatat tgacgccaga tcgttgtctt cctgaagaga
     7141 atcatgaatt gccagtccca ataatggttg tactgcctgg gctcgcaaac gctcttcgct
     7201 ggaaaaaggt atatcgcgca ttaatgaaat gcccgcgata atacgatggc cccgacgaat
     7261 aaagatctca atcatgtcgc acacatgatt aggtagcata aattcatgat aataatggcg
     7321 atgacgagca cagatgccgg gcgtcatcgt cgctactgta ataacctgtt ggccgaatcg
     7381 ggaaggcaat agcgggtcta atggttgaaa atgctccaga tattgttggt gtgtgctatt
     7441 agaaatatta tgtaaaacat aggcttccgg ctttaaataa gcattaacac gataaaaaac
     7501 cgccgacgac agaggaatga gttgcgcaat gctctgtaag caatggagag tgatcccgtc
     7561 attatggcca gtagttgata aggctgacat gttatctcct tccatccgga tgagcgcgtc
     7621 ggggcgcagt aaaatagtgg tatgttgaaa cata
//
LOCUS       DAJVSD010000212         7631 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.212, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000212 DAJVSD010000000
VERSION     DAJVSD010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7631
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.212"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            106..321
                     /gene="bdm"
                     /locus_tag="OQP62_003591"
     CDS             106..321
                     /gene="bdm"
                     /locus_tag="OQP62_003591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm-dependent modulation protein"
                     /protein_id="HCS1723032.1"
                     /translation="MFTYHSANTSAAQPALVNAIEQGLRAELGVVTEDDILMELTKWV
                     EASDNDILSDIYQQTINYVVSGQHPTL"
     gene            416..559
                     /gene="sra"
                     /locus_tag="OQP62_003592"
     CDS             416..559
                     /gene="sra"
                     /locus_tag="OQP62_003592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stationary-phase-induced ribosome-associated
                     protein"
                     /protein_id="HCS1723033.1"
                     /translation="MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRAD
                     SQK"
     gene            736..2433
                     /locus_tag="OQP62_003593"
     CDS             736..2433
                     /locus_tag="OQP62_003593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent malic enzyme"
                     /protein_id="HCS1723034.1"
                     /translation="METTTKKARSLYIPYAGPVLLEFPLLNKGSAFSVEERRNFNLSG
                     LLPEVVESIEEQAERAWLQYQGFKTEIDKHIYLRNIQDTNETLFYRLVQNHLEEMMPV
                     IYTPTVGAACERFSEIYRRARGVFISYPNRHNMDDILQNVPNHNIKVIVVTDGERILG
                     LGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRHPRI
                     TDDEYYAFVDEFIQAVKQRWPDILLQFEDFAQKNAMPLLTRYRDEICSFNDDIQGTAA
                     VTVGTLIAASRAAGSQLSEQKIVFLGAGSAGCGIAEQIIAQTQREGLSEDAARQNVFM
                     VDRFGLLTDRMPNLLPFQAKLVQKCDNLQHWDTENDVLSLLDVVRNVKPDILIGVSGQ
                     TGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFSPVI
                     WKDKVYPIAQCNNAYIFPGIGLGVIASGASRITDEMLMSASETLAKHSPLVNNGEGLV
                     LPALKDIQVVSRAIAFAVGKMAQQQGVAVKTSAEALQQAIDDNFWKPEYRDYRRTSI"
     gene            2715..3725
                     /gene="adhP"
                     /locus_tag="OQP62_003594"
     CDS             2715..3725
                     /gene="adhP"
                     /locus_tag="OQP62_003594"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
                     /protein_id="HCS1723035.1"
                     /translation="MKAAVVTQDHQVDVTEKTLRPLRHGEALLKMECCGVCHTDLHVK
                     NGDFGDKTGVILGHEGIGVVAEVGPGVTSLKPGDRASVAWFYEGCGHCEYCNTGNETL
                     CRNVKNAGYTVDGGMAEECIVVADYAVKVPEGLDSAAASSITCAGVTTYKAVKISHIK
                     PGQWIAIYGLGGLGNLALQYAKNVFNAKVIAIDVNDGQLKLAEEMGADLTINSRTEDA
                     AKIVQEKTGGAHAAVVTAVAKAAFNSAVDAVRAGGRVVAVGLPPEAMNLDIPRLVLDG
                     IQVVGSLVGTRQDLTEAFQFAAEGKVVPKVALRPLEDINVIFKEMEQGQIRGRMVIDF
                     RR"
     gene            complement(3718..4848)
                     /locus_tag="OQP62_003595"
                     /pseudo
     CDS             complement(3718..4848)
                     /locus_tag="OQP62_003595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460529.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
     gene            4964..5342
                     /locus_tag="OQP62_003596"
                     /pseudo
     CDS             4964..5342
                     /locus_tag="OQP62_003596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460532.3"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
     gene            complement(5367..6854)
                     /gene="smvA"
                     /locus_tag="OQP62_003597"
     CDS             complement(5367..6854)
                     /gene="smvA"
                     /locus_tag="OQP62_003597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl viologen efflux MFS transporter SmvA"
                     /protein_id="HCS1723036.1"
                     /translation="MFRQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELL
                     WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSHTASWLIATRV
                     LLAIGAAMIVSATLAGIRATFCEEKHRNMALGVWAAVGSGGAAFGPLIGGILLEHFYW
                     GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHAVMLIIAILLLVYSAKTALKG
                     NLSLWVISLTLLTGALLLGLFIRTQLATSRPMIDMRLFTHRIILSGVVMAMTAMITLV
                     GFELLMAQELQFVHGLSPYEAGVFMLPVMVASGFSGPIAGALVSRLGLRLVATGGMAL
                     SALSFYGLAMTDFSTQQWQAWGLMALLGFSTASALLASTSAIMAAVPAEKAAAAGAIE
                     TMAYELGAGLGIAIFGLLLSRSFSASIRLPAGLEAQEIARASSSMGEAVQLANSLPPT
                     QGQAILDAARHAFIWSHSVALSSAGSMLLLLAVGMWFSLAKAQRR"
     gene            6972..7550
                     /locus_tag="OQP62_003598"
     CDS             6972..7550
                     /locus_tag="OQP62_003598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HCS1723037.1"
                     /translation="MSYLNRDERREVILQAAMRVALAEGFAAMTVRRIASEADVAAGQ
                     VHHHFSSAGELKALAFVHLIRTLLDAGQVPPPATWRARLHAMLGSEDGGFEPYIKLWR
                     EAQILADRDPHIRDAYLLTMQMWHEETVTIIEQGKQAGEFTFTANATDIAWRLIALVC
                     GLDGMYVLGIPEMADPAFKYHLDRMITLELFA"
BASE COUNT         1857 a         2034 c         1994 g         1746 t
ORIGIN      
        1 tccaggacta atcttaacca cagccgcaaa aatatttgcc atgctgaata cgaattaatt
       61 ttctgcgagc cgtactaaat aaatacatgt tcacggaggc attatatgtt tacttatcac
      121 tcagcaaata cctcagcagc acaaccggcc ctggtcaacg cgattgaaca aggattacgc
      181 gcggagttag gcgttgtcac tgaagatgat attttaatgg agctgaccaa atgggttgag
      241 gcttccgaca atgacatcct cagtgacatc taccagcaga ccatcaacta tgtggtaagc
      301 gggcagcacc cgactctgta aaacctgcta tgctgtatcg gcaaccttag gggttacgtt
      361 tctttcgcgt aagcgaattt gtccttaaaa ctagcaacag gattgaggag ttaacatgaa
      421 atcgaaccgt caggctcgtc atatacttgg actggattac agaatttcca accagcgtaa
      481 ggttgttact gaaggcgaca ccagcagcgt ggtgaataac ccaaccggca gaaagcgtcg
      541 cgccgatagc caaaagtaat cgtacagtcc tgaaatgacg ttaaacacca ttgcatctgc
      601 aatggtgttt ttgtttatag gaatgacctt aacgtctcac aatgctttat actcagggtc
      661 ggttccctgg tggaaggcaa tatatgatga taaacgacgg tgccagggac agttattcga
      721 aaaagagtga gcaacatgga aactacaacc aagaaagcac gttcccttta tatcccttac
      781 gctggccctg tattgctgga attccccctg ttaaacaaag gcagcgcttt tagcgtagaa
      841 gagcgccgca acttcaattt gtcaggactg ctgccggagg tcgtcgagtc gattgaagaa
      901 caggccgaac gcgcctggct ccagtatcag gggtttaaaa cagaaatcga taagcatatt
      961 tacctgcgta acatccagga taccaacgaa acgctctttt atcgactggt gcaaaaccat
     1021 cttgaagaga tgatgccggt tatctatacc ccgaccgtgg gcgcggcctg tgagcgcttc
     1081 tctgagattt atcgccgggc gcgcggcgta tttatctctt atccgaaccg tcacaatatg
     1141 gacgacattt tgcagaatgt gcctaaccac aacattaaag ttattgtggt gacggatggc
     1201 gagcggattc tggggcttgg cgatcagggc atcggcggaa tggggatacc tatcggtaag
     1261 ctgtcattat acaccgcctg cggcggcatt agtccggcct atacccttcc cgttgtgctg
     1321 gatgtcggca ccaacaatca acagttactc aacgatccgc tctacatggg ctggcgtcat
     1381 ccgcgcatta ccgacgatga gtattatgcg tttgtcgatg agtttattca ggccgttaag
     1441 cagcgctggc cagatatcct gctacagttc gaagatttcg cgcagaaaaa cgcaatgccg
     1501 ctgttgacgc gctatcgtga tgagatttgc tcctttaacg atgatattca gggcaccgca
     1561 gccgtgaccg tcggtacgtt gatcgccgcc agccgcgctg ccggcagtca gcttagcgag
     1621 cagaaaatcg ttttcctcgg cgcgggttca gccggatgtg ggattgctga acagatcatc
     1681 gcgcagactc agcgtgaagg tttaagcgaa gatgccgctc gacagaacgt ttttatggtc
     1741 gatcgcttcg gcctgttgac ggaccggatg cctaatttat tgccgttcca ggcaaaactg
     1801 gtgcagaaat gcgacaatct ccagcactgg gataccgaaa atgacgtgct gtcgctgctg
     1861 gatgtggtgc gtaacgtgaa gccggatatc ctgatcgggg tttccggcca gaccgggctc
     1921 tttactgaag agatcatccg cgagatgcat aagcattgcc ctcgcccgat cgtcatgccg
     1981 ctctctaatc ccacctctcg cgtggaggcc acgccacagg acattatcgc ctggacggaa
     2041 ggcaacgcgc tggtggcaac cggcagccca ttctcgccgg tcatctggaa agataaggtt
     2101 tatccgatcg cacaatgtaa taacgcctat attttccccg gcatcggact tggggttatc
     2161 gcttccggcg catcgcgcat tactgatgaa atgctgatgt cagccagtga gacgctggcg
     2221 aaacattctc cgctggtgaa taacggcgaa ggattagtgt taccagcgct taaagacatc
     2281 caggtcgtgt cgcgcgctat cgcttttgcc gtaggcaaaa tggcgcagca acaaggcgta
     2341 gcggtgaaaa cctctgcgga agcgctgcaa caggcgattg acgataactt ctggaaaccg
     2401 gaataccgcg actaccgtcg gacttccatt taatacgtac ccggcggtga atgccgccgg
     2461 atatcacttt cttctttagt tttggtgagt ctgtcgacac acctgaattc ctttccctgc
     2521 ttatttgtca agctactaat attagccacc tttatgtatt gaacgaggat ttatcaggat
     2581 aatcctggct aaactattac attgtatttc tgccgccttg cataactcat cagaaatatt
     2641 aatcctaaag aggtaatagc accttacctg ctattacctg ctatgcagtt cactattaag
     2701 aaaaggagaa ggttatgaaa gctgctgttg tcacacaaga tcatcaggtt gatgttactg
     2761 agaaaacgct gcgtcccctt cgccacggtg aagctttgct aaaaatggag tgctgcggtg
     2821 tatgccatac cgatctacac gtgaaaaacg gagatttcgg tgacaaaacc ggcgttattc
     2881 tgggacacga aggcattggc gtcgtggcgg aagtcggtcc tggtgtcacc tcgctgaaac
     2941 ccggcgatcg cgcgagtgtc gcgtggtttt atgaaggatg cggacactgt gagtattgca
     3001 atacgggcaa tgaaacctta tgccgcaacg tgaaaaatgc cggttacacg gtagatggcg
     3061 gcatggccga agagtgtatt gtcgtcgcgg attatgcggt gaaagtaccg gaaggcctgg
     3121 actctgcggc ggcaagtagt attacctgcg cgggcgttac cacctataaa gcggtgaaga
     3181 tttctcatat taaacctggc cagtggattg ccatctacgg tctgggcggt ctgggtaatc
     3241 tggccttgca gtacgcgaaa aacgttttca atgcgaaagt gatcgccatt gatgtcaatg
     3301 atgggcaact gaaactggcc gaggaaatgg gcgcagatct gaccattaat tcacgtacgg
     3361 aagatgcggc taaaattgtg caggaaaaaa ccggtggcgc gcacgcagcg gtggttaccg
     3421 cggtcgctaa ggcggcgttt aattccgcag tagatgccgt tcgcgccgga ggccgcgtgg
     3481 tggcagtcgg gctgccgcca gaagccatga accttgatat ccctcgcctg gtgctggatg
     3541 gcattcaggt tgtcggttcg ttggtgggga cacgccagga tctgaccgaa gccttccagt
     3601 tcgcggcgga aggaaaagtc gtgccaaaag tcgctttacg tccgcttgaa gatatcaacg
     3661 ttatttttaa agagatggaa cagggacaaa ttcgtggccg tatggtcatc gatttccgtc
     3721 gttaaacgat ttgctgtggt tctgccagaa cgttgacgtt tcagtcacca gcggatcgat
     3781 aacgaccaga tacttcagtt tgcttaagct ttgcaccact ttgtttttgt ccgggaagga
     3841 cgccaccggg ttaaagccct gacagaaata gccggtaact ttcccgctat ccatcatgtt
     3901 gaaatatttg atcacatcat aggactgatc ccacttaggc agccaggcaa agccccagtc
     3961 attctctttc tgcgccgcat cgccatagaa agatttcatc aggctgacga agaacttagg
     4021 ataattcccc cagtagttga cctgatcggc cagcgtcgct ttgggggtat tcgcggccag
     4081 ataagtttgc agatcggcct gtttttctga cggtagcgtc aggtagcccg gcaggctggt
     4141 ggagagcagt cctaaatccg ttaagccctg aatattagag tggccgcgca aggcgttcac
     4201 accgccgcca gccatcccca tattgccgag cagcaactgg atcatcgcca tagtacggat
     4261 gttctgcgcc ccgacggtat gttgcgtcca gcccagcgca tacaggaagg tcgtagtgcg
     4321 atccggcgcg ctggtagagg ccaacacctc acacaccttc aggaagtccg ctttcggcgt
     4381 accgcagatg ttttccacga cgtccggcgt atagcgcgaa acgtgctgct tcagcagatt
     4441 ccacacacag cgtgggtgcg tcaacgtttc atcacgtttg gcatagccgt tttcatcgaa
     4501 ctggtagttc caggaggatt tatcgtactg acgcttttgg gcgtcatagc cgctgaaaag
     4561 accgtcttcg aacgtaaagt cttcccgcac cagcaggctg gcgttggtgt aatgcttaac
     4621 gtattcagcg ttgattttgt tattttcgat caggtacagc aaaacgccgg acagaaaggt
     4681 aatgtctgta ccggaacgta ttggcgcata gatatccgcc accgacgccg tacgcgtaaa
     4741 gcgtggatca acgacaatca gcgtcgcatc gttattattt ttcgcttcca tcgcccagcg
     4801 gaaacccacc ggatgcgctt ctgcggcatt gccgcccatc accatcagtc ctttcagggc
     4861 tggctttttc tcttgatgta gactcggtca taaggagtat gccgtgcaga cgttcactgg
     4921 tcgttgtctt tgcggacaaa gccattttac cgttgacgtc gaaatgctgg atgtctatgc
     4981 ctgccattgt acgctgtgtc aaaaatggtc gggtggaata gccatgtatc tggaagcctg
     5041 cgggcaacca cagctagccc ccctttcccc ggaaccgcca tacttttcat cctcttcgcg
     5101 cggcgaacgc tacttctgtt ctggctgcgg gtgtccgctg tggtttcggc ttaccgatac
     5161 cgatcgctat ttttccctgg accttactgg aactgaacga agttgatcgc cgtcggctga
     5221 ttctggctgc ggaaatttat accgaaaccc agcctgcctt ctggcgactg acggggcaat
     5281 acgcacgcct cagcggtaaa gaggttgagg aaatggactc cccctgccag ctagcgcatt
     5341 aagcgcttat ctcatcaggc gttatgttat cggcgttggg cttttgccag gctgaaccac
     5401 atccctaccg ccagcaaaag aagcatactc ccggcgctgc ttaacgccac gctatgcgac
     5461 cagataaagg cgtgtctggc ggcgtccagt attgcctgcc cctgcgtggg cggcaggcta
     5521 ttcgccaact gcacggcttc tcccattgaa gatgacgctc tggcaatctc ttgcgcctca
     5581 agcccggcag gcagacggat agacgcggag aagctacggc ttaacaacag gccgaaaatg
     5641 gcgatgccca gtcccgcgcc cagttcataa gccatcgttt ctatcgcgcc ggccgccgcc
     5701 gctttttctg ccggcacagc ggccataatt gccgacgtgg aagccagcaa tgcgctggcg
     5761 gtgctaaatc ccagcagcgc catcagcccc caggcctgcc attgttgggt gctgaaatcc
     5821 gtcatcgcca gaccataaaa actcagcgcg cttaacgcca tgccgcccgt cgcgaccagc
     5881 cgtaacccca gacgcgagac cagcgcgccc gcaatcggcc cgctgaatcc actggcgacc
     5941 atcaccggca gcataaatac cccggcctca taaggcgata gcccgtgaac aaactgtagc
     6001 tcttgcgcca tcagcagctc aaaacccacc agagtgatca tcgcggtcat cgccatcacg
     6061 acgccgctca ggataatgcg atgggtaaat agtcgcatat caatcatcgg acgcgatgtc
     6121 gcaagctgtg tgcggataaa gagtcccagt agcaacgcgc cggtaagcag ggtaagcgag
     6181 atgacccaca gcgacaaatt ccctttcagc gcggttttag cgctatagac caacagcaaa
     6241 atggcaataa tcagcatcac cgcatggcca agattgagcg gttgatcgcg acggcccgcc
     6301 tgacgaggaa catagcgggc ggttaagccc atgacgacca gcacaatcgg cacgttgatc
     6361 aggaaaaccg atccccagta aaaatgctct aataatatgc cgccgatgag cggcccaaac
     6421 gccgctccgc ccgaacctac cgcagcccag acgcccagcg ccatgttgcg atgcttctct
     6481 tcacaaaagg tggcgcgtat cccggccagc gtcgccgata caatcatcgc cgcgccaata
     6541 gccagtaata ccctggtggc gataagccaa ctggcggtat gcgaaaacgc cgccgccagt
     6601 gatgccaggc caaagagcgt cccgcccagc atcagcaggc gtttaaaacc gatacgatcg
     6661 ccaagcgcgc ccatcggcaa caccatgcca gccatgacca aagaataaat atcaatgatc
     6721 cacagcagct cgttgccgct ggcccccagt gtcatactca gtgtcggcgc ggcgacatgc
     6781 aagaccgtgg catcaatggc gacaggaata tagaccagca caataatgac taacgttaac
     6841 cactgacgaa acataactct cccttcaaaa acttaaacct ggacacctgt ccaatttcag
     6901 gatcctacgg taagttgaac gaatgtccag ctttttgtta cactgcgcgc attggctaat
     6961 gtggggaaaa tatgagttac cttaaccggg atgaacgccg cgaagtgatc ctgcaagcgg
     7021 cgatgcgcgt ggcgctggca gaggggtttg ccgccatgac ggtgcgacgg atcgcatcag
     7081 aagccgatgt cgccgccggc caggtgcatc accacttcag ctcggcgggc gagctcaaag
     7141 cgctggcctt tgtccatttg atccgtaccc tgctcgatgc cgggcaagtt ccgccgcccg
     7201 ccacctggcg tgcacggctt cacgctatgt tgggtagcga agacggcggc tttgagcctt
     7261 acataaaatt gtggcgagag gcgcaaattc tggccgaccg ggacccgcac atcagagatg
     7321 cttatctcct cacgatgcag atgtggcatg aggaaacggt cacaattatc gagcagggca
     7381 aacaggcagg agaatttacg tttactgcta acgccacgga tatcgcctgg cggcttatcg
     7441 cactggtgtg cgggctggac ggtatgtatg tgctgggtat tccggaaatg gccgatcccg
     7501 cgtttaaata ccatctggat cgtatgatta cgcttgaact ctttgcgtaa agttacaaat
     7561 aatttaataa aaatcgcttt taatttacaa atagtaacaa ttaagaaaca tcatatctcc
     7621 tcttcgcgcc g
//
LOCUS       DAJVSD010000213         7621 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.213, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000213 DAJVSD010000000
VERSION     DAJVSD010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7621
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.213"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(477..1442)
                     /gene="glk"
                     /locus_tag="OQP62_003599"
     CDS             complement(477..1442)
                     /gene="glk"
                     /locus_tag="OQP62_003599"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HCS1723038.1"
                     /translation="MTKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAV
                     VRVYLDEHGVSVEDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFT
                     AVSMAIPMLKKEHLIQFGGGEPVDGKPIAVYGAGTGLGVAHLVHVDKRWISLPGEGGH
                     VDFAPNSEEEAMILEILRAEIGHVSAERVLSGPGLVNLYRAIVKSDNRLPENLRPKDI
                     TERALADSCIDCRRALSLFCVIMGRFGGDLALTMGTFGGVYIAGGIVPRFLEFFKASG
                     FRGGFEDKGRFKDYVHGIPVYLIVHDNPGLLGSGAHLRQTLGHIL"
     gene            1646..2881
                     /locus_tag="OQP62_003600"
     CDS             1646..2881
                     /locus_tag="OQP62_003600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion channel protein"
                     /protein_id="HCS1723039.1"
                     /translation="MFHPRARTMLLLSLPALIIGVASSLVLIASMKVASVFQQFLWQR
                     LPASIGIAYDSPFWIVGMLTLTGIVVGLIIRYSPGHAGPDPAIEPLISMPVSPSALPG
                     LLLALIIGLAGGVSLGPEHPIMTINIALAAAFGSRLFPRITALDWTILASAGTIGALF
                     GTPVAAALIFSQTLSGSNDIPMWDRLFAPLMAAAAGSLTTSLFFHPHFSLPIAHYTQM
                     RLVDIASGAIVAAIAIAAGMVAVWCLPRLHELLHRLKNPVLILGIGGFILGILGVIGG
                     PLTLFKGLDEMQQMAFSQTLGAGDYFTLAVVKLAALVIAAASGFRGGRIFPAVFIGAA
                     LGLMLHAHVEAVPAAITVSCAILGLVLVVTRDGWLSLFMAAVVVPDTNLLPLLCIVML
                     PAWLLLAGKPLLAANRHEP"
     gene            complement(2901..4553)
                     /locus_tag="OQP62_003601"
     CDS             complement(2901..4553)
                     /locus_tag="OQP62_003601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-keto acid decarboxylase family protein"
                     /protein_id="HCS1723040.1"
                     /translation="MQNPYTVADYLLDRLAGCGIGHLFGVPGDYNLQFLDHVIDHPTL
                     RWVGCANELNAAYTADGYARMSGAGALLTTFGVGELSAINGIAGSYAEYVPVLHIVGA
                     PCSAAQQRGELMHHTLGDGDFRHFYRMSQAISAASAILDEQNACFEIDRVLGEMLAAR
                     RPGYIMLPADVAKKTAIPPTEALALPVHEAQSGVETAFRYHARQCLMNSRRIALLADF
                     LAGRFGLRPLLQRWMAETPIAHATLLMGKGLFDEQHPNFVGTYSAGASSKEVRQAIED
                     ADRVICVGTRFVDTLTAGFTQQLPAERTLEIQPYASRIGETWFNLPMAQAVSTLRELC
                     LECAFAPPPTRSAGQPVRIDKGELTQESFWQTLQQCLKPGDIILVDQGTAAFGAAALS
                     LPDGAEVVVQPLWGSIGYSLPAAFGAQTACPDRRVILIIGDGAAQLTIQEMGSMLRDG
                     QAPVILLLNNDGYTVERAIHGAAQRYNDIASWNWTQIPPALNAAQQAECWRVTQAIQL
                     AEVLERLARPQRLSFIEVMLPKADLPELLRTVTRALEARNGG"
     gene            4733..5731
                     /gene="mgrA"
                     /locus_tag="OQP62_003602"
     CDS             4733..5731
                     /gene="mgrA"
                     /locus_tag="OQP62_003602"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glyceraldehyde 3-phosphate reductase"
                     /protein_id="HCS1723041.1"
                     /translation="MIYQPDENRYHTMEYRRCGRSGVKLPAISLGLWHNFGDTTRVEN
                     SRALLQRAFDLGITHFDLANNYGPPPGSAECNFGRILQEDFLPWRDELVISTKAGYTM
                     WDGPYGDWGSRKYLIASLDQSLKRMGLEYVDIFYHHRPDPETPLKETMKALDHLVRHG
                     KALYVGISNYPADLARQAIDILEDLGTPCLIHQPKYSLFERWVEDGLLTLLQEKGVGS
                     IAFSPLAGGQLTDRYLNGIPEDSRAASGSRFLKPEQITADKLEKVRRLNELAARRGQK
                     LSQMALAWVLRNDNVTSVLIGASKPSQIEDAVGMLANRRFSAAECAEIDAILEGRF"
     gene            5845..6171
                     /locus_tag="OQP62_003603"
     CDS             5845..6171
                     /locus_tag="OQP62_003603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2502 domain-containing protein"
                     /protein_id="HCS1723042.1"
                     /translation="MFRSLILAAALLAFTPLAANAGEITLLPSIKLQIGDRDDYGNYW
                     DGGRWRDRDYWHNHYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGRGR
                     GHKHHH"
     gene            complement(6232..7473)
                     /locus_tag="OQP62_003604"
     CDS             complement(6232..7473)
                     /locus_tag="OQP62_003604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HCS1723043.1"
                     /translation="MTDNRVENSSGRAARKLRLALMGPAFIAAIGYIDPGNFATNIQA
                     GASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAE
                     IIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL
                     LLFVAAAYIVELFFSQPDMAQLGKGMVIPALPNPEAVFLAAGVLGATIMPHVIYLHSS
                     LTQHLHGGTRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGIADLDQAY
                     LTLEPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFVRFHIPLWVRRTITMLP
                     SFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSNATLMGELVNTRRVKQIGWI
                     IVVLVVALNIWLLVGTVMGLS"
BASE COUNT         1745 a         2135 c         2034 g         1707 t
ORIGIN      
        1 atttcctgtc aataaacctt atctcaaata atcccctttt gattttgtgg tttttcctct
       61 ttaatcaaaa gccttactaa cgataatggt attcgttcat gtcatattgc ggtatttttc
      121 agggatattt ccccgaaaat aaggatcctt tccggcaagc tgccgcgatg aaagcgtaaa
      181 taaggcagcg aaccggatac gtacagtaaa ataaatccct gttttcgcct gagtaatcac
      241 catgacgtga tgactcaacg cgctggtgtt tgacttttcg ctcagcaaga gtaaagtgaa
      301 ataattcagt cagttgaagt attcatacac aggaacggca atgaaaaaaa accgcgtgag
      361 gcacgcggtt tgagactgac aagagaatgt ttcattgcct gatgacgctg cgcttatcag
      421 gcctacagat gacacacttt tgtaggccgg ataaggcgtt tatgccgccg tctgacttat
      481 agaatatggc ctaatgtctg gcgcagatgc gcgccggagc ctaacaagcc gggattatca
      541 tggacaatca gatagaccgg aataccgtgt acataatctt taaagcggcc tttatcttca
      601 aagcccccac ggaagccaga cgctttaaag aattccagga agcgcgggac aatgccgcca
      661 gcgatataaa cgccgccaaa tgtccccatg gttaacgcca gatcgccgcc aaatcgcccc
      721 atgatgacgc aaaagagcga caacgcgcgg cgacaatcga tacagctatc cgccagggcg
      781 cgttcggtaa tatctttcgg gcgcagattt tccggcagac ggttgtcgga cttaacaatc
      841 gcccggtaaa gattcaccag ccccgggcca gacagcacgc gctcggcgga aacgtggcca
      901 atttcggcgc gcaatatttc cagaatcata gcttcttctt cgctattagg cgcaaaatcg
      961 acatgcccgc cttcgcccgg aaggctaatc caacgcttat ccacatgcac cagatgcgcc
     1021 acgcccaagc cggttcccgc gccgtacacc gcaataggtt tgccgtctac cggttcgccg
     1081 ccgccgaact gaattaaatg ctcttttttc agcatcggga tcgccatcga cacggcggtg
     1141 aaatcgttga tgatttccag atgactaaag ccgagatttt ttttcatttc cgcaatagaa
     1201 aaagcccagg tatggttagt catcgccacc cagtcgccgg taatcgggca ggctatggcg
     1261 atacaaccat cttccacgct gacgccatgc tcatcgagat aaacgcgcac cacggcctca
     1321 agactggggt aatccaggcc ggaatacgtt ttggcctgcg agatttctcc actggcgata
     1381 tcacacaggg caagacgcgc attcgtgccg cctacatctc ctactaaagc atactttgtc
     1441 attcttctac tactccgcta aagtcaaaat aagtctttgt cacactgtaa attcatgggg
     1501 gcataacaac aacggccatc aggctgactg cctataaata tagatcttca tcacagaatt
     1561 actttcttgt ttcagcacca attgcagcaa tgccgtcggg caggctgtgc aaaatagata
     1621 tacgaccccg tgtaaggaag agattatgtt ccacccgcgt gcccgaacga tgctgctgct
     1681 gtcgctccct gcgctgatta ttggcgtagc gtcaagccta gttttaatcg cctcgatgaa
     1741 agtcgcgtcg gtttttcagc aatttctttg gcaacgactg cccgccagca tcggaatcgc
     1801 ttatgattcg ccgttctgga tagtgggtat gctcacgcta accgggatcg tggtgggttt
     1861 gattatccgt tacagtcccg gacacgctgg ccccgatccg gccatcgaac cgttaatcag
     1921 tatgccggtc tcgccatctg cgctgcccgg gctgcttctc gccttaatca tcggccttgc
     1981 tggtggggta agtttggggc cagagcatcc gataatgaca ataaatatcg cgctggcggc
     2041 ggctttcggc tcccgcctgt ttccgcgtat cacggcgtta gactggacga ttctggcctc
     2101 agcaggcacc atcggcgcgc tgttcggcac gcccgtcgcc gcggcgctga ttttttcgca
     2161 aacgcttagc ggctctaacg atattcccat gtgggatcgc ctgtttgcgc cgttaatggc
     2221 ggcagcggcg gggtcactca ccaccagcct gttctttcat ccgcattttt cgttacccat
     2281 cgcccattac acgcagatgc ggctggtgga cattgccagc ggagcgatcg tcgcggcgat
     2341 cgccattgcc gccgggatgg tcgccgtctg gtgccttccg cgtctgcacg agttgctgca
     2401 ccgactaaaa aatccggtcc tgattctcgg cattggcggt tttatactgg gtattctggg
     2461 cgtcattggc gggccgctta ccctgtttaa aggcctggac gaaatgcaac aaatggcgtt
     2521 tagccagacg ttgggcgcgg gagattattt taccttagcc gtcgtcaaac tcgccgcgct
     2581 ggtcatcgcg gcggcgagcg gctttcgcgg cgggcgcatt tttccggctg tgtttatcgg
     2641 cgcggcgctg gggctcatgc tccatgccca tgttgaggcc gtacccgcgg cgattaccgt
     2701 ctcctgcgcg attcttggct tagtgctggt agtgacgcgc gacggctggc tcagtctgtt
     2761 tatggcggca gtcgtcgtac cggataccaa tctgctgccg ctgctctgca ttgtgatgct
     2821 ccccgcctgg ctattgctgg cgggaaaacc gttgctggcc gccaaccgtc acgaacccta
     2881 atccggcgca gcgggggcca ttatcccccg ttgcgggctt ccagcgcccg ggtcacggta
     2941 cgcagtaatt ccggcagatc ggcttttggc aacatcactt caataaatga cagacgttgt
     3001 gggcgcgcca accgttcgag gacctctgcc agttggatag cctgcgtcac ccgccagcac
     3061 tccgcctgtt gcgccgcgtt tagcgccggt ggtatctgcg tccagttcca gctcgcgatg
     3121 tcgttatacc gctgggccgc gccgtgaatg gcgcgctcta cggtatagcc gtcattgttg
     3181 agcagcagga tgaccggcgc ctgcccgtcg cgtaacatcg agcccatctc ctgaatcgtg
     3241 agctgcgccg cgccatcgcc aataatcaga attacccgcc gatcggggca ggcggtttgc
     3301 gcgccaaacg cggcgggcaa ggaatagccg atagaccccc acagcggctg aaccacaact
     3361 tccgcgccgt caggaagcga cagcgcggca gcgccaaagg cggcggtccc ctggtcgaca
     3421 aggataatat cgccgggttt gagacactgc tgtaaggttt gccagaagct ttcctgggtc
     3481 agttctccct tatcaatccg cactggctgt ccggcggaac gcgtcggcgg cggcgcaaaa
     3541 gcgcattcaa ggcacagttc gcgcagcgta gacactgcct gcgccatcgg gaggttgaac
     3601 caggtttcgc cgatgcgcga cgcgtaaggc tgaatctcca gcgtgcgttc cgccggcaat
     3661 tgttgggtaa atccggccgt aagggtatcg acaaaacggg tgccgacgca gataacccta
     3721 tcggcgtcct ctatggcctg acgtacttct ttgctgctgg cgcctgcact ataggtgcca
     3781 acgaagttcg ggtgctgttc atcaaaaagc cccttcccca tcagtagtgt cgcatgagcg
     3841 atgggcgttt ccgccatcca gcgctgcaac agtggtcgta aaccaaaacg cccggcaaga
     3901 aagtcggcca atagcgcaat gcgccgactg ttcatcaggc actgacgggc gtggtaacga
     3961 aaagccgtct ccacgccgct ttgcgcttca tgcacgggca acgccagcgc ctccgtaggc
     4021 gggatagccg tttttttcgc cacgtcggcg ggcagcatga tgtatcctgg cctgcgtgcg
     4081 gcaagcattt cacccaatac gcggtcaatc tcgaaacagg cgttctgttc atccaatatt
     4141 gcgctggcag cggatatcgc ctgactcatg cgataaaaat gacgaaaatc gccgtcaccg
     4201 agggtatggt gcatcaattc gccacgctgc tgcgcagcgc tacagggcgc gccgacgata
     4261 tgcaagaccg ggacatattc cgcgtaactg cccgcgatac cgttaatagc gctaagttct
     4321 cccacgccaa aggtggtgag tagcgctcca gcgcccgaca tgcgcgcata accgtccgcg
     4381 gtataagcgg cgttcagctc attggcgcat cccacccaac gcaaggtcgg gtggtcaatc
     4441 acatggtcaa gaaactgcaa gttataatcg cccggtacgc caaaaagatg gccaatgccg
     4501 catcctgcca gtctgtccag caaatagtcg gccacggtat aggggttttg catgacagct
     4561 ttccttctga cgttgacatt atgttgagta ttaaggaatg ccgatggctg tccagcacgg
     4621 cggggatgaa agcctggaaa acaatgttta cagcggcaaa cagtaaaagc cggataccgc
     4681 ctggcgagtg taaccgtata cactatttat tcacgccaca gggggaaagg tcatgattta
     4741 tcagcccgat gagaatcgtt atcacacaat ggagtatcgt cgctgcgggc gcagcggcgt
     4801 caaacttccc gctatttcgc tggggttatg gcacaacttc ggcgatacga cacgggtaga
     4861 aaatagccgg gcgctgctgc aacgcgcgtt cgatctgggc attacccact ttgatctcgc
     4921 caataattat gggccgccgc cgggctccgc agaatgcaat tttggccgca ttctgcagga
     4981 agatttttta ccgtggcgcg atgagttagt catctccacc aaagcgggct acaccatgtg
     5041 ggatggccct tatggcgact ggggttcacg gaaatacctt atcgccagcc tcgatcaaag
     5101 cctgaaacgt atggggctgg agtatgtcga tatcttttat caccatcgtc ccgatcccga
     5161 aacgccgctt aaagagacga tgaaagcgtt agatcacctt gtgcgccacg gcaaagcgtt
     5221 gtacgtgggg atctctaact atcctgccga tctggccaga caagctatcg atattctgga
     5281 ggatctcggc acgccttgcc tgattcatca gcctaaatat tcgctttttg agcgttgggt
     5341 agaggacggg ctgctgacgc tgttgcagga aaaaggcgtc ggcagtattg ccttctcgcc
     5401 gctggcgggc gggcagctca ctgaccgtta tctgaatggc attccggaag attcccgcgc
     5461 ggcgagcgga agccgtttcc ttaaaccaga acagattacc gccgacaaac tggaaaaagt
     5521 tcgccggttg aatgaactgg ctgcacgacg gggccaaaaa ttgtctcaga tggcgctcgc
     5581 ctgggtgctg cgtaacgata acgttacctc ggtactgatt ggcgccagca aaccgtcgca
     5641 aatcgaagac gccgtaggaa tgctggccaa tcgccgtttt tcggcggcgg aatgtgcaga
     5701 aattgacgct attctggagg gccggtttta gcaaaaaatg ctctccttca tgatttaaga
     5761 gttaaggcga tgaaacaaat ctttactgct ttgtaatatt gcattaacag gccggcgacg
     5821 gctcgatcgt gaaggagaga aagtatgttc aggtcactga ttctggcggc agccttgctg
     5881 gcttttacac cgcttgccgc gaatgcgggc gaaatcaccc tgttgccctc aataaaatta
     5941 cagattggcg atcgcgatga ttacggtaac tactgggacg gtggtcgctg gcgcgaccgg
     6001 gattactggc acaaccatta tgaatggcgt aaaaatcgct ggtggcgcca tgacaacggc
     6061 tatcatcgcg gctgggataa gcgtaaagcg tatgaacgcg gttatcggga aggctggcgc
     6121 gatcgcgacg atcatcgcgg gcgaggccgg ggtcacaaac atcatcacta agcctcctgc
     6181 tgaataacag cccgatgacg cccacgcatc gggcctgcta tctttctgtc tttatgacaa
     6241 ccccatcacc gttccaacca gcaaccagat attcagggcg acgaccagca cgacaattat
     6301 ccagccaatc tgttttaccc gccgcgtgtt caccagctcg cccattagcg tagcgttact
     6361 ggtgaaaatc aggagcggca ccagcgccag cgcaatacca aaactcagca gcacctggct
     6421 catcaccaga attcgggtag ggtccagccc catcaaaatc acaataaatg agggcagcat
     6481 ggtaatggtg cgccgtaccc acagcggaat gtgaaaacgg acaaaccctt gcatcaccac
     6541 ctgccccgcc agagtcccta ccacggtgga ggaaagccct gccgcaacca gactaagacc
     6601 aaacactgtt gccgccgcat ggcttagtaa cggttccagc gtcaggtatg cctgatcgag
     6661 gtcggcgatg ccagtatggc cgctaaaatg aaacgccgcc gcggcggtcg ccatcattgc
     6721 cagattgaca aaaccggcaa tcgtcatggc aatagcgaca tcccatttcg ttgctgagta
     6781 ccgttgttgc cgcgttccgc cgtgcagatg ctgcgttaat gacgagtgca gataaatcac
     6841 gtgcggcata atcgtcgcgc caagcacgcc ggcggctaag aatacggctt ccgggttcgg
     6901 tagcgccggg ataaccattc ctttgccgag ctgcgccata tcaggctgag agaaaaacag
     6961 ctccacaatg taagcggcgg cgacaaaaag cagtaaaccg ccgatgactt tttcaagcgg
     7021 tttttgaccg cggcgctgta acattaaaat cagaaacgtc gcgataccgg tcaataccgc
     7081 gccctgtagt aaagagacgc ccaggatcag cttaaaacct attgccgcgc cgataaattc
     7141 agctaaatcg gtggccatcg cgatgatttc cgcctgtacc cagtaaaacc agactaccgg
     7201 acgcggataa tggtcgcgaa tttgctccgc caggttcttg ccggtggcga tcccgagttt
     7261 tgccgagagg atttgaatca gcatcgccat caggttcgcc cagaccacca cccagagtag
     7321 ctggtagcca aagctggcgc cggcctgaat attggtcgcg aagttaccgg gatcgatata
     7381 accaatcgcg gcaatgaacg caggtcccat taatgcgagc cttagcttgc gcgccgcccg
     7441 tccgctgcta ttctctacgc gattgtcagt catcttttgc ctcaaaaaca tagcctttgc
     7501 tatgtttcat gctatgttca ttgataatga ttatcaagtg catttcaatg ggtacgggtg
     7561 attactttga tagtgtgaaa cgatagaccg atacgatggc gacctgtatc agaacagttt
     7621 g
//
LOCUS       DAJVSD010000214         7585 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.214, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000214 DAJVSD010000000
VERSION     DAJVSD010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7585
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.214"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(416..721)
                     /gene="cbpM"
                     /locus_tag="OQP62_003605"
     CDS             complement(416..721)
                     /gene="cbpM"
                     /locus_tag="OQP62_003605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone modulator CbpM"
                     /protein_id="HCS1723044.1"
                     /translation="MANITVTFTITEFCLHTGVTEEELNEIVGLGVIEPYEDDNADWQ
                     FDDRAASVVQRALRLREELALDWPGIAVALTLLEENSRLREENRLLLQRLSRFISHP"
     gene            complement(721..1641)
                     /gene="cbpA"
                     /locus_tag="OQP62_003606"
     CDS             complement(721..1641)
                     /gene="cbpA"
                     /locus_tag="OQP62_003606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curved DNA-binding protein"
                     /protein_id="HCS1723045.1"
                     /translation="MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEA
                     RFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIF
                     GQHGRHSHHRHAARGHDIEIEVAVFLEETLEEHQRTISYSVPVYNAFGLVEREIPKTL
                     NVKIPAGVSNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVNQDLEVVLPLA
                     PWEAALGAKVSVPTLKERILLTIPPGSQAGQRLRIKGKGLASKKHTGDLYAIIKIVMP
                     PKPDEKTAALWQQLADAQSSFDPRQQWGKA"
     gene            1877..2239
                     /locus_tag="OQP62_003607"
     CDS             1877..2239
                     /locus_tag="OQP62_003607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein"
                     /protein_id="HCS1723046.1"
                     /translation="MAKQQRMGWWFLCLACVVVMVCTAQRMAGLHALQMQATASAAVV
                     SAPSSTDDGSPVTPCELSAKSLLAAPPVLFEGAILALYLLLSLLAPVRVMRLPFSPPR
                     AISPPTLRVHLRFCVFRE"
     gene            2288..4174
                     /locus_tag="OQP62_003608"
     CDS             2288..4174
                     /locus_tag="OQP62_003608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HCS1723047.1"
                     /translation="MMILFRRILFCLLWLWLPVSWAAESGWLRSPDNDHASIRLRADT
                     SANSETRLLLDVKLENGWKTYWRAPGEGGVAPSIAWKGDMPEVSWFWPTPSRFDVANI
                     TTQGYHDEVTFPMIVRGTPPATLRGVLTLSTCSNVCLLTDYPFSVTPTVQNADFAHDY
                     ARAMGKVPLRSGLTDSLDVGYRPGELVVTATRAAGWSSPGLYLDTIDDVDFAKPRLRV
                     EGDRLQATVPVTDSWGEKAPDLRDKSLTLVLADGAIAQESTQTIGAAPAQTPDNAALP
                     FWQVVMMALIGGLILNLMPCVLPVLGMKLGSILLVEEKSRSHIRRQFLASVAGIIASF
                     MALAAFMTLLRLSNHALAWGVQFQNAWFIGFMALVMLLFSASLFGLFEFRLPSSMTTK
                     LATYGGNGMSGHFWQGAFATLLATPCSAPFLGTAVAVALTASLPTLWGLFLALGLGMS
                     APWLLVAIRPGLALRLPRPGRWMNVLRRILGLMMLGSAIWLATLLLPHFGFTASKSAQ
                     DTVQWQPLSEQAIQSALAQHKRVFVDVTADWCITCKVNKYNVLQKEDVQAALQQPDVV
                     ALRGDWTLPSDAITDFLKTRGQVAVPFNQVYGPGLPEGEALPTLLTRDAVLQTLKKAK
                     GITQ"
     gene            4171..4794
                     /locus_tag="OQP62_003609"
     CDS             4171..4794
                     /locus_tag="OQP62_003609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HCS1723048.1"
                     /translation="MKYMIVLLLALFSTLSIAQETAPFTPDQEKQIKNLIHAALFNDP
                     ASPRIGAKHPKLTLVNFTDYNCPYCKQLDPMLEKIVQKYPDVAVIIKPLPFKGESSIL
                     AARIALTTWRDHPQQFLALHEKLMQKRGYHTDDSIKQAQQKAGATPVTLDEKSMETIR
                     TNLQLARLVDVQGTPATIIGDELIPGAVPWDTLEAVVKEKLAAANGG"
     gene            4784..5290
                     /locus_tag="OQP62_003610"
     CDS             4784..5290
                     /locus_tag="OQP62_003610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein disulfide oxidoreductase"
                     /protein_id="HCS1723049.1"
                     /translation="MAGKLRRWLREAAVFLALLIAIMVVMDVWRAPQAPPAFAATPLH
                     TLTGESTTLATLSEERPVLLYFWASWCGVCRFTTPAVAHLAAEGENVMTVALRSGGDA
                     EVARWLARKGVDFPVVNDANGALSAGWEISVTPTLVVVSQGRVVFTTSGWTSYWGMKL
                     RLWWAKTF"
     gene            5423..6664
                     /gene="agp"
                     /locus_tag="OQP62_003611"
     CDS             5423..6664
                     /gene="agp"
                     /locus_tag="OQP62_003611"
                     /EC_number="3.1.3.10"
                     /EC_number="3.1.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glucose-1-phosphatase/inositol
                     phosphatase"
                     /protein_id="HCS1723050.1"
                     /translation="MKKSLLAVAVAGAVLLSSAVQAQTTPEGYQLQQVLMMSRHNLRA
                     PLANNGNVLAQSTPNAWPAWDVPGGQLTTKGGVLEVYMGHYTREWLVAQGLIPSGECP
                     APDTVYAYANSLQRTVATAQFFITSAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAF
                     RQQAVQAMEKARSQLHLDESYKLLEQITHYQDSPSCKEKHQCSLIDAKDTFSANYQQE
                     PGVQGPLKVGNSLVDAFTLQYYEGFPMDQVAWGGIHTDRQWKVLSKLKNGYQDSLFTS
                     PTVARNVAAPLVKYIDKVLVAERVSAPKVTVLVGHDSNIASLLTALDFKPYQLHDQYE
                     RTPIGGQLVFQRWHDGNANRDLMKIEYVYQSARQLRNAEALTLKSPAQRVTLELKGCP
                     VDANGFCPLDKFDNVMNTAAK"
     gene            complement(6698..6925)
                     /locus_tag="OQP62_003612"
     CDS             complement(6698..6925)
                     /locus_tag="OQP62_003612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002898701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YccJ family protein"
                     /protein_id="HCS1723051.1"
                     /translation="MPTQEAKAHRVGEWASLRNTSPEIAEAIFEVAHYDEKLAEKIWE
                     EGSDEVLIKAFEKTDKDSLFWGEQVIERKNV"
     gene            complement(6946..7542)
                     /gene="wrbA"
                     /locus_tag="OQP62_003613"
     CDS             complement(6946..7542)
                     /gene="wrbA"
                     /locus_tag="OQP62_003613"
                     /EC_number="1.6.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H:quinone oxidoreductase"
                     /protein_id="HCS1723052.1"
                     /translation="MAKILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMP
                     PEIFAKAGGKTQNAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGA
                     LYGKLGGVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYSAQELFDVSQVRGGTPY
                     GATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG"
BASE COUNT         1632 a         1984 c         2161 g         1808 t
ORIGIN      
        1 acgctcaatt attaaactgt aagtgactgt tgtatttctt atttataaat accgcaacct
       61 gtaagcgcag cggtacattt tacccggcat tgacagggag aagatacgta tcaaccagag
      121 agtacaaaac agtgaaagaa tatattcttc aggcaataaa tgatcgctaa cgtgtaaaaa
      181 taaccgacga atctaaaaaa tgtgagcgtg tggctggtct ttatttaaac gatgatcttc
      241 gcaatggcgc attaatggct gacattggcg gttcgttgat cggcttgtgc gcggtgaaag
      301 gctatatttc ttccgttgcg ggaagtatgt cagaggcatt ctggtattat accgggtgta
      361 tgtaaatccg gggtgggcag aaagcccacc ctcggtttat tgcctttatc gtggattagg
      421 gatgcgagat aaagcgagaa aggcgttgca gcagtaaccg gttttcttcg cgcagccgtg
      481 aattctcttc cagcagcgtt aacgcgaccg cgatccctgg ccagtcgagc gccagctcct
      541 cgcgtaagcg tagcgcgcgt tgtaccacgc tcgctgcgcg atcgtcgaat tgccagtcgg
      601 cgttatcgtc ttcgtaaggc tcaattacgc caagtccgac gatttcgttt agctcctctt
      661 ccgtcacgcc ggtgtgcaaa caaaattcgg tgatggtaaa ggtgacagtg atgttagcca
      721 ttatgctttc ccccattgct ggcgtgggtc aaaggacgac tgcgcgtccg ccagttgttg
      781 ccacagggca gctgttttct cgtcaggttt cggcggcata acgattttga tgatggcata
      841 gagatcgcca gtgtgctttt tactggctaa tccttttcct ttgatacgca gccgctgacc
      901 tgcctggctg ccggggggaa tggtcagcaa aatacgctct ttaagcgttg gcacagacac
      961 cttagcgccg agcgccgcct cccatggggc aagcggaagg acgacttcca gatcctgatt
     1021 gacgatatca aagagcggat gcggggcaat atggataacg agccataaat cgccattagg
     1081 tccgccgttt tcccccggcg tgccctggcc tttcagtctg attcgttgcc cgttgctgac
     1141 gccagccggg attttcacat tcaatgtttt gggaatttcc cgctccacca ggccgaacgc
     1201 gttataaacg gggacggaat agctaatcgt acgctggtgc tcttccagcg tttcttccag
     1261 gaataccgcc acttcaattt cgatatcatg accgcgtgcg gcgtggcggt ggtgcgaatg
     1321 acgaccgtgc tgaccaaaaa tagacgagaa aatatcatca aaatcttcgg cgttatacgg
     1381 ctggccttcg tgttgctgga actggcgatt aaattgtgga tcgttacggt gttgccataa
     1441 ctggtcatac tcggcgcgcc gttgctcatc actcagcact tcccatgctt cagcaacctc
     1501 tttgaaacgg gcttcggcat cgggttcttt gctgacatct ggatggtact tgcgggccag
     1561 tcggcgatag gcggtcttaa tcgtcttgag atcgtccgtc ggtttcacgc ccataatggc
     1621 gtaataatcc ttaagttcca tagcatcatc tcgctaaatc aatacataca gaagggaccc
     1681 caaaaaggtt tctccactaa gtgtagggta aacctgaaaa gtgcgtatga aaacaccagt
     1741 tatatcatta gtaagaataa attacgttgt tcgactatca gaaggttgcg cagcgcgccg
     1801 acataacttt acaggggaaa ggttgccaaa accgcgccag tggctaagat aactcgcgtt
     1861 aaacagtgag ggcgcaatgg cgaaacaaca acggatgggc tggtggtttc tttgccttgc
     1921 atgtgtcgtg gtaatggttt gtaccgcgca acgcatggcg ggcctgcacg ccttgcagat
     1981 gcaggcgacg gcctctgctg cggtggtcag cgctccctcc tcgacagatg acggctcgcc
     2041 ggtcactccc tgcgaattaa gcgccaagtc gctgctggcg gcgcctccag tactctttga
     2101 aggtgctatc cttgcgcttt atctactgct ttccttactg gcgcctgtcc gggtcatgcg
     2161 cctgccgttt tcgcctccac gggctatttc gccgcccaca ttacgggtac atctacgatt
     2221 ttgtgtcttc cgtgaatgac agaccggtta ttactaacgg ttaattactc attcacggag
     2281 aaaaaatatg atgattttat tcaggcggat actgttctgc ctgttatggc tttggctgcc
     2341 cgtctcctgg gcggcggaaa gcggctggct gcgttcgccc gataacgacc atgccagcat
     2401 acggctacgt gccgatacgt ccgctaacag tgagacccgg ctgttgctgg atgtcaaact
     2461 ggaaaacggc tggaaaacct actggcgcgc gccgggggaa gggggcgtgg caccctctat
     2521 cgcctggaaa ggcgacatgc ctgaggtaag ctggttctgg ccaaccccct cgcgctttga
     2581 tgtggcgaat atcaccaccc agggatatca cgacgaggtg acctttccga tgatcgtgcg
     2641 cggtacgccg ccggcgacct tgcgcggtgt gttgacgtta tcaacctgca gcaatgtttg
     2701 tctgttgacc gattacccct tttccgtgac gcccactgtg cagaatgccg attttgccca
     2761 tgactatgcg cgggcgatgg gtaaagttcc gctccgcagt gggctaacgg actcgcttga
     2821 cgttggctat cgcccgggag aactggtggt cactgctacg cgagcggcgg gctggtcatc
     2881 gcccgggctc tatcttgaca ccatagatga cgtcgatttt gcgaagcctc gcctgcgcgt
     2941 agagggcgac aggttacagg cgacggtgcc ggtgacggac agttggggcg aaaaggcgcc
     3001 cgatttgcgc gacaaatcgc tgaccctcgt gttagccgat ggcgctatcg cccaggagag
     3061 cacgcaaacc attggcgctg cgccagcgca aacgccggac aatgcggcgc tacctttctg
     3121 gcaagttgta atgatggcgc taatcggcgg actgattctt aatttaatgc cctgcgtact
     3181 gcctgttctg ggcatgaaac ttggctctat tttattggta gaggaaaaaa gccgctctca
     3241 catcaggcga caatttttgg cttcggtcgc cggtatcatt gcgtcattta tggcgctggc
     3301 ggcgtttatg accctccttc gcctgtcaaa ccatgcgctg gcctggggag tccagttcca
     3361 gaatgcatgg tttattggtt ttatggcgct ggtgatgttg ttgtttagcg ccagcctgtt
     3421 cgggcttttt gagttcaggc ttccctcatc tatgaccacg aaactggcca cttacggcgg
     3481 taacggtatg tcgggacatt tctggcaggg ggcgttcgcc acgctgctgg cgacgccttg
     3541 tagcgcgccg tttctgggca cggcggtcgc ggtggcgctc acggcgtcgc tgccgacgct
     3601 gtgggggctg ttccttgcgc ttggcctggg aatgagcgcg ccgtggctac tggtcgcgat
     3661 acgaccaggg cttgcgctac gtttaccgcg ccccgggcgt tggatgaatg tcctgcgcag
     3721 gatcctcggt ctgatgatgc tggggtcggc tatctggctg gcgacgttac tcctgccgca
     3781 tttcggcttc actgcgtcaa agagcgcgca agacacggtt cagtggcaac cgttgagtga
     3841 acaggcaatc cagtcggcgc tggcgcagca taagcgggta tttgtcgatg tcactgcgga
     3901 ctggtgtatt acctgtaaag tgaataaata caacgtcctg caaaaagagg atgtgcaggc
     3961 cgccttgcaa cagccggatg ttgtggcgct gcggggagac tggacgctgc cgtccgatgc
     4021 cattacagat tttctgaaaa cgcgcggcca ggtcgccgtg ccgtttaatc aggtatatgg
     4081 ccccggtttg ccggaagggg aggcactgcc cactttgctg acccgcgatg cggtattaca
     4141 aacgttgaaa aaagcgaaag gaataaccca atgaaataca tgattgtttt actgctggcg
     4201 ctgttttcga cgctgagcat cgcgcaagaa accgctcctt ttacgccgga tcaggaaaag
     4261 cagattaaaa atctgatcca tgcggcgttg tttaacgatc ctgccagccc gcggataggc
     4321 gctaaacacc ctaagctgac gctggtgaac tttacggatt acaactgccc gtactgcaaa
     4381 cagctcgatc cgatgctgga aaagattgtg cagaaatatc ctgacgttgc ggtcattatt
     4441 aaaccgctgc cattcaaagg agagagttcc atactggcgg cgcgtattgc gctgaccacc
     4501 tggcgcgatc atccgcaaca gttcctcgcg ctacatgaaa aacttatgca aaagcgcggt
     4561 taccatacgg atgacagtat taaacaggcc cagcagaaag caggggcgac gccagtgacg
     4621 ctggatgaaa aaagcatgga aacgatacgc actaatttgc agttggcaag actggtcgac
     4681 gtgcaaggaa cgccagcgac gatcattggc gacgagctga ttccgggcgc agtgccctgg
     4741 gatacgctgg aagcggtggt gaaagaaaaa ctggcggctg ccaatggcgg gtaaactgcg
     4801 gcgttggctg cgtgaagccg cggtttttct ggcgctcctc atcgcgataa tggtggtcat
     4861 ggacgtctgg cgcgcgccgc aggcgcctcc ggcgtttgcc gcgacaccat tacatacgct
     4921 gacgggagag tcgacaactc tggcgacctt gagcgaggaa cgccccgtac tgctctattt
     4981 ttgggccagc tggtgcgggg tatgccgctt taccacgcct gcggtcgctc acctggcggc
     5041 ggaaggggaa aacgtcatga ccgttgcgct ccgctccggc ggtgatgctg aggttgcccg
     5101 ctggctggcg cgcaagggcg ttgacttccc ggtcgtcaat gatgctaacg gcgccttatc
     5161 cgctggctgg gaaatcagcg tgacgccaac gctggtggtg gtttcacaag gtcgggttgt
     5221 gttcaccacc agcggctgga ccagctattg gggcatgaag cttcggctgt ggtgggcaaa
     5281 aacgttctga atatgcgccg gggtttcccg gcgctaacgc gtttactgta agaaaaacct
     5341 ccgttttgcg aaatcgttcc cggaaaaatg atccatttct gtcacactca gaacgatttg
     5401 ataacaacaa gaggtcatag ggatgaaaaa atcattactc gctgttgctg tggcaggggc
     5461 tgttttgttg tcatccgccg tacaggcgca gacaacgccg gaaggttatc aattacaaca
     5521 ggtgctgatg atgagccgcc ataatctgcg ggcgccgctg gcgaataatg gcaacgtact
     5581 ggcgcagtcg acgccgaacg cctggccggc gtgggacgtt cccggcgggc aactgacgac
     5641 gaaaggcggc gtgctggaag tctatatggg acactacaca cgtgaatggc tggtcgcgca
     5701 ggggctgata ccgtcgggag aatgtccggc gcccgacacg gtatatgcct atgcgaatag
     5761 tttgcagcgc accgtcgcca ccgcgcaatt tttcattacc agcgctttcc ccggctgtga
     5821 tattcctgtt catcatcagg aaaaaatggg cactatggac cctaccttca atccggtgat
     5881 taccgatgat tccgccgcgt tccggcaaca ggccgtacag gcgatggaaa aggcgcgtag
     5941 tcagctacat cttgatgaga gttataaact gcttgagcag ataacgcatt atcaggactc
     6001 gccgtcctgc aaagagaagc atcagtgttc gctaatcgac gcgaaagata ccttcagcgc
     6061 gaactatcag caagagcctg gcgtgcaggg gccgctgaaa gtagggaact cgctggtgga
     6121 tgcgtttacc ctgcaatatt acgaaggctt tccgatggat caggtcgctt ggggcgggat
     6181 ccacaccgat cggcagtgga aggtgctgtc aaaactgaaa aacggctacc aggacagcct
     6241 gtttacctca cccacggtgg cgcgcaatgt cgctgcgccg ctggtaaaat atatcgataa
     6301 ggtgctggtt gccgagcgcg ttagcgcgcc gaaggttacc gtgctggtgg ggcatgattc
     6361 caatatcgcg tcgctgctga cggcgctgga ttttaaaccc tatcagctcc atgaccagta
     6421 tgagagaacg ccgattggtg gtcagcttgt cttccaacgc tggcatgacg gtaacgctaa
     6481 ccgggatttg atgaaaatcg agtatgtcta ccagagcgcc cggcagttac gtaatgcgga
     6541 agcgttaacg ctcaaatcgc ctgcgcaaag ggtaacgctg gaactgaaag gatgtccggt
     6601 ggatgcgaac ggcttctgtc cgctggataa gttcgataac gtcatgaaca ctgctgcaaa
     6661 atagccgtat gcccccgcgc aggcgggggc gtttgtgtta tacgttctta cgttcgatga
     6721 cttgttcgcc ccagaagagc gagtctttgt ccgttttctc aaaggctttg atcagcacct
     6781 catcgctacc ttcttcccat attttttctg ccagtttctc gtcatagtga gcgacttcaa
     6841 aaatggcttc ggcaatttcc ggcgacgtat tacgcaggct tgcccattcg ccgacgcggt
     6901 gcgcttttgc ttcttgagtt ggcattcgaa tcctcctgtt gaagattagc cgttgagttt
     6961 gactgccaga ccggcgacgt attccccctg atagcgagcg atagagagtt cctcctggct
     7021 tggttgacgt gaaccgtcgc ctccagcgat agtcgttgcg ccgtaaggcg taccgccgcg
     7081 aacctgggag acgtcaaaca gttcctgtgc ggaatagcct atcgggacaa tcaccatccc
     7141 atgatgggca agcgtagtcc aggtcgaggt gatggtctgc tcctggccgc cgcccgttcc
     7201 ggtagaactg aacacgccgc cgagcttgcc gtatagcgcg ccggatgccc acagtccgcc
     7261 ggtttggtcc aggaaggtac gcatctggcc tgacatattg ccaaaccggg ttggcgtacc
     7321 aaaaataatg gcatcgtaat ccgccagctc ctgtggggtg gcaaccggtg cgttttgcgt
     7381 tttaccgcca gcttttgcga agatttcagg cggcattgtt tctggcacac gctttataat
     7441 gacctctgcg ccgtcgactt tctttgcccc ttccgccacc gcgtgcgcca tggtttcaat
     7501 gtgtccgtac atggaataat agagcaccag aatctttgcc atttgtacta ctcctcagat
     7561 taatcaggtg tgtagcgatt cgcta
//
LOCUS       DAJVSD010000215         7585 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.215, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000215 DAJVSD010000000
VERSION     DAJVSD010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7585
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.215"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            61..510
                     /gene="alaE"
                     /locus_tag="OQP62_003614"
     CDS             61..510
                     /gene="alaE"
                     /locus_tag="OQP62_003614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-alanine exporter AlaE"
                     /protein_id="HCS1723053.1"
                     /translation="MFSPQSRLRHAVADTFAMVVHCSVVNMLIEIFLSGMSFEQSLSS
                     RLVAIPVNILIAWPYGVYRDLIMRVARKASPAGWAKNLADVLAYVTFQSPVYIIILLT
                     VGAGWHQIVAAVSSNIVVSMLMGAVYGYFLNYCRRLFKVSSYHQAKA"
     gene            complement(545..895)
                     /locus_tag="OQP62_003615"
     CDS             complement(545..895)
                     /locus_tag="OQP62_003615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgaC family protein"
                     /protein_id="HCS1723054.1"
                     /translation="MYLRPDEVARVLEKAGFTVDVVTNKTYGYRRGENYVYVNREARM
                     GRTALIIHPRLKDRSSSLADPASDIKTCDHYQNFPLYLGGETHEHYGIPHGFSSRIAL
                     ERYLNGLFGDEKSD"
     gene            1057..1383
                     /locus_tag="OQP62_003616"
     CDS             1057..1383
                     /locus_tag="OQP62_003616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311560.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HCS1723055.1"
                     /translation="MLNKPNRNDVDDGVQDIQNDVNRLADSLEDVLKSWGSDAKDEAE
                     AARRKAQALLKETRARMQGRTRVKQAACDAMGCADTFVREKPWCSVGTAAAVGIFIGA
                     LLSLRR"
     gene            complement(1467..2801)
                     /locus_tag="OQP62_003617"
                     /pseudo
     CDS             complement(1467..2801)
                     /locus_tag="OQP62_003617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461729.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
     gene            2890..3321
                     /locus_tag="OQP62_003618"
     CDS             2890..3321
                     /locus_tag="OQP62_003618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HCS1723056.1"
                     /translation="MTTLRQPYYELSPEVYSALVQAKNALEKSTIDPTLMELIYLRVS
                     QINGCAFFLEMHSKALRKAGVNQAKLDALAGWRVSHHFNEQECAALAWAESVTHIAET
                     HAEDNVYLPLLDHFSAREISDLTFAIGLMNCFNRLAIGMRM"
     gene            3593..3838
                     /gene="nrdH"
                     /locus_tag="OQP62_003619"
     CDS             3593..3838
                     /gene="nrdH"
                     /locus_tag="OQP62_003619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-like protein NrdH"
                     /protein_id="HCS1723057.1"
                     /translation="MSITIYTRNNCVQCHATKRAMESRGFEFEMVNVDLVPDAADTLR
                     AQGFRQLPVVMAGDLSWSGFRPDMINRLPPTPHAANA"
     gene            3835..4245
                     /gene="nrdI"
                     /locus_tag="OQP62_003620"
     CDS             3835..4245
                     /gene="nrdI"
                     /locus_tag="OQP62_003620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class Ib ribonucleoside-diphosphate reductase
                     assembly flavoprotein NrdI"
                     /protein_id="HCS1723058.1"
                     /translation="MSALVYFSSSSENTHRFMQRLGLPATRIPLNERERIQVDEPYIL
                     VVPSYGGGGMAGAVPRQVIRFLNDEHNRARIRGVIASGNRNFGDAWGCAGDVIAQKCG
                     VPWLYRFELMGTQRDIDNVRKGVNEFWQQSPRSA"
     gene            4218..6362
                     /gene="nrdE"
                     /locus_tag="OQP62_003621"
     CDS             4218..6362
                     /gene="nrdE"
                     /locus_tag="OQP62_003621"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HCS1723059.1"
                     /translation="MATITPERVMQETMDYHALNAMLNLYDKAGHIQFDKDQQAIDAF
                     FAAHVRPHSVKFASQHERLETLVREGYYDDAVLARYDRAFVFRLFEHAHASGFRFQTF
                     LGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPA
                     TPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAG
                     APIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKREN
                     ADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDEL
                     IADPHVRKTYINARDFFQTLAEIQFESGYLYIMFEDTVNRANPIAGRINMSNLCSEIL
                     QVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMSH
                     IRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHT
                     SMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMW
                     LKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPA
                     PFMTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY
                     AWRKGIKSLYYIRLRQLALESTEIEGCVSCAL"
     gene            6373..7332
                     /gene="nrdF"
                     /locus_tag="OQP62_003622"
     CDS             6373..7332
                     /gene="nrdF"
                     /locus_tag="OQP62_003622"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit beta"
                     /protein_id="HCS1723060.1"
                     /translation="MKLSRISAINWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPA
                     WQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHA
                     RSYSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQIILAHYVSDEPLKKKIASVFLESF
                     LFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAIEREEL
                     KLFALDLLMELYDNEICYTEALYAETGWVNDVKAFLCYNANKALMNLGYEALFPPEMA
                     DVNPAILAALSPNADENHDFFSGSGSSYVMGKTVETEDEDWNF"
BASE COUNT         1813 a         2071 c         1914 g         1787 t
ORIGIN      
        1 ttataatttc actaccaact atcacctcat tctgatcgat acgctacaag gagcattaac
       61 atgttctctc cacagtcacg cttgcgtcat gccgtagcag acacgtttgc gatggttgtt
      121 cactgttctg ttgtgaacat gttgatcgag atattcctct ccggaatgag ctttgagcag
      181 tcgctttctt ccaggctggt ggcgatacct gtcaacattt tgattgcatg gccatacggc
      241 gtttaccgcg atctgattat gcgcgtcgcg cgtaaggcaa gcccggcggg atgggccaaa
      301 aacctggcgg atgtattggc ttatgtcacc tttcagtcac ccgtttatat tatcatcttg
      361 ctgaccgtcg gcgccggctg gcatcagata gtggccgccg tgagttcaaa cattgttgtt
      421 tcaatgttaa tgggcgcggt ttatggctac ttcctgaatt attgtcgtcg cctgtttaaa
      481 gtgagcagct atcatcaggc taaggcataa gttaacgtcg cgactggctt tgccagtcgc
      541 gcttttagtc gcttttttcg tcgccaaaaa gcccattcag ataacgttct aacgctattc
      601 gggagctaaa gccgtgggga ataccgtaat gttcgtgggt ctcgccgcct aaatagagcg
      661 gaaaattttg gtagtgatcg caggttttaa tatccgaagc cgggtcagcc agtgatgagc
      721 tacggtcttt taatctgggg tgaatgatca gcgcggtacg ccccatacgc gcctcgcggt
      781 taacataaac ataattctcg ccgcgtcgat aaccatacgt cttattcgtc accacatcga
      841 cggtaaaccc tgccttttcc agtacccgcg ccacctcgtc aggtcgtaaa tacatgtttt
      901 atcctcattc tcttttactg cgggcttacc ttacccgata gcgcgttatc aacgctttca
      961 gaaaagtcca gaaacgcatg atatcgccgt aacaagcctc agcaggtaaa aatatgaact
     1021 acactgaaag ctacatcgaa atcaatggag gatcatatgc ttaacaaacc gaaccgaaac
     1081 gacgtcgatg atggtgttca ggatattcag aatgatgtca atcgattagc cgacagtctg
     1141 gaagatgtcc ttaaatcctg gggaagcgat gcgaaagacg aagccgaggc tgcgcgacgt
     1201 aaagcacagg cgttgctgaa agagacccgg gcgcggatgc agggtcgtac tcgcgtaaaa
     1261 caagccgcct gtgatgcgat ggggtgcgcg gatacgtttg tgcgtgaaaa accctggtgt
     1321 agcgtaggaa ccgccgcagc ggtggggatt tttatcgggg cgctgcttag cctgcgtcgc
     1381 taacgacgtg cgctgccgga tggcgacata ctttatgggg cctgcatcat tgccgcaggc
     1441 ccaggtcgcg ccattcggcg aaacggttac tgtatcgcct gtcgaagctg acatgctacc
     1501 tgtttcgcca tgccagcgga agtaatattg gtaaacgaca gtaaaatgcc cccctttcct
     1561 gacgaaacca ctcgccaacg acttagcgcc tgtaccgcca gtccggcctg attcgctttt
     1621 gctaccagcg ctttatcatc accttcaacc tcaataacca attgaatacc gcctttctgt
     1681 aatgtcacga caaatccctg ttctgccagc gcctcttcaa tccataaccg tcgctgagca
     1741 taatgttgac gcatcttttt cagatgccgc cagaaatggc catcacggat aaaatcagcc
     1801 agcgtgtgct gccataacaa cggtacgcta cagggcatca gcgacgcctg ctggcggaaa
     1861 tgctcaatct gctttatcgg caccaccagc caggcggtac gtaatgccgg aaagagcgac
     1921 ttactgaacg ttccggcgta aatcactcgc tgcggggcat ccagactctt gagcggcgga
     1981 agcggtttac cgtgataacg aaattcgctg tcgtagtcat cttcaataat ccaggcctgc
     2041 acattcgccg cccatgccag aagttgccgt cggcgagtta acgacagcgc cacccccaac
     2101 ggactttgat gggcgggcgt caccaatgca aagcgtccct gcgggcaatc ccgcatcccc
     2161 gctgcgacat tcagcccatc ggcatcgacc ggaatcggcg ccagcgtaat cccctcctgc
     2221 gttatcaccg ggcgaattaa cggaaagccg ggatcttcca cccacatgct gtctcccggc
     2281 acagacaatg tacgcaggat tagccgcata gaatccgcat atccggaggt aataaatacc
     2341 tgttccggca gacattcaat gctacgcgaa acccgcaggt aatcgactat cgcctagcgc
     2401 aaaatcgcct cgccgcagac gtcgcctaat gccagatcga agcgtgtctg cgtgcgcaac
     2461 cgacgcccca ttactcgcgc ccacttctcg cgtggaaaga gatccagcgc cggtaacccc
     2521 atctgaaagg gtttcggttc cggactttct ccggcaaaaa cagcgggtat cggcggcgcc
     2581 gtctcaaacc gtagagcgtt gctcacaaac gtgcctgcct ggccacgtcg ctccagccag
     2641 ccctgcgcta ccagctcgcc ataggcattt tccaccgtgg cgcgagaaac gcccagttcc
     2701 tgcgcccacg tccgactgga aggcaaacgc gttccgggcg cgagttctcc ttgctcaatg
     2761 gccgttttta actgacgagc gatgtactga tagcgcggca tatggtctgc tttttctgta
     2821 aaaatatggc tctcttttac agaccattat agtgctacag tgctcgtcat caacacgagg
     2881 agaaacataa tgacgacgtt acgccaaccc tattatgaac tgagcccgga ggtttacagc
     2941 gctctggtgc aggcgaaaaa cgcgctggaa aagagcacga ttgaccccac tctgatggag
     3001 ctgatttacc tgcgtgtttc gcaaataaat ggttgtgcat ttttcctgga gatgcacagt
     3061 aaagcgctgc gtaaggctgg cgtgaatcaa gctaaattag atgcgctggc aggatggcgg
     3121 gtaagccacc atttcaacga gcaagagtgc gcggcgttag cctgggcgga atcggtgacg
     3181 cacattgctg aaacccacgc cgaagataat gtttacctgc cgctgctcga tcatttcagc
     3241 gcgcgtgaaa tcagcgatct gaccttcgct attggtttaa tgaactgctt taaccgtctg
     3301 gcgatcggta tgcgaatgtg acgcattgtt gccggatagc gctgatgtca gccaactctg
     3361 ttatgcgtga acctgcaggc cggatcgggc gttcacgccg ccatccggca aaaattagcc
     3421 atgccgcccc taccccgctg cgttcatcag cggcgttaaa atcaatcgaa aattcccata
     3481 tcttgtatgg ttgaatctta attcaactac atctagtatt tcgtgtatca acacacgaca
     3541 atccgacgcg tttcatcgcg ccgttttctc attttaaatg gaaatacgaa tcatgagcat
     3601 tactatttac actcgcaata actgtgttca gtgccacgcc acaaagcggg cgatggaaag
     3661 ccgtggattt gaatttgaga tggtgaacgt cgatctggtg ccggatgcag cggatacgct
     3721 ccgggcgcaa gggtttcgtc aattaccggt ggtgatggcg ggcgatttga gctggtctgg
     3781 cttccgtccg gacatgatta accgtctgcc cccgacgccc cacgcggcaa acgcatgagc
     3841 gcgctcgtct acttctccag cagctctgaa aatacgcacc gttttatgca gcgtctgggg
     3901 ctgcccgcca cgcgtattcc gctcaatgaa cgggagcgaa ttcaggtaga cgaaccgtac
     3961 attctggttg tgccgtcata cggcggcggc gggatggccg gtgcggtgcc gcgacaggtg
     4021 atccgctttt taaatgatga acacaaccgg gcgcgcattc gcggcgtcat cgcctccggt
     4081 aaccgcaatt tcggcgatgc ctggggatgc gctggcgatg tgatagcaca aaaatgcggc
     4141 gtcccctggc tgtaccgctt tgagctcatg ggcacacaac gcgacatcga taacgtccga
     4201 aaaggagtaa atgaattttg gcaacaatca ccccggagcg cgtaatgcag gaaaccatgg
     4261 attaccacgc cctgaacgcg atgctgaatc tttacgataa agcaggccat attcagttcg
     4321 acaaggacca gcaggcgatc gacgccttct ttgccgccca cgtccgcccg cattccgtga
     4381 agtttgccag ccagcatgaa cgtctggaga cgctggttcg ggaagggtat tacgatgacg
     4441 ccgtcctcgc gcgttacgac cgcgccttcg tcttccgcct gttcgagcac gcccacgcca
     4501 gcggctttcg cttccagacg tttcttggcg cctggaagtt ctataccagt tacacgctga
     4561 aaaccttcga cggcaaacgt tatctggaac actttgaaga tcgggtgaca atggtggcgt
     4621 tgacgctggc gcagggtgac gaaacgctgg ccacccaact gaccgatgaa atgctttctg
     4681 gtcgctttca gcccgctacc ccgacttttt taaattgcgg taaacagcag cgtggggaac
     4741 tggtctcctg cttcctgctc cgtatcgaag acaatatgga atcgatcggg cgagcggtga
     4801 attcggcgct gcaactctcc aaacgcggcg gcggcgtcgc atttttactc tccaatctgc
     4861 gcgaggcggg cgcgccgatc aaacgcattg agaatcagtc ttccggcgtg atcccggtga
     4921 tgaaaatgct ggaagacgcg ttttcgtatg ccaaccagct tggcgcgcgc caaggggccg
     4981 gcgcggttta tctccatgcg caccatccgg atattctgcg ttttctggat accaaacggg
     5041 aaaatgccga cgaaaaaatc cggatcaaaa cgctctctct cggcgtggtg atcccggaca
     5101 tcaccttccg gctggcgaaa gaaaacgcgc aaatggcgct cttttcgccc tatgacatac
     5161 aacgacgcta cggcaaaccg tttggcgata tcgccattag cgaacggtac gatgaattaa
     5221 ttgccgatcc gcacgtgcgc aaaacctata ttaacgcccg tgactttttt caaacactgg
     5281 cggaaattca gttcgaatcc gggtatctct acatcatgtt tgaagatacg gtaaaccgcg
     5341 cgaatcctat tgctggtcgc attaatatga gcaacctgtg ctcggaaatt ttacaggtca
     5401 atagcgcctc tcgttacgac gataaccttg actataccca catcgggcat gacatctcct
     5461 gcaatctcgg ctcgctgaat atcgctcacg tcatggattc accggacatt ggccgtaccg
     5521 tagaaaccgc tattcgcggc ctgacggcgg tgtcggacat gagccatata cgcagcgtgc
     5581 cctcaatagc cgccggtaat gccgcctctc atgccatcgg tctgggccag atgaatctgc
     5641 atggctatct ggcgagggaa ggtattgcct acggttcgcc ggaggcgttg gatttcacca
     5701 atttctattt ttacaccatt acctggcatg ccgtgcatac ttcaatgcgg ctggcccgcg
     5761 aacgcggcaa aaccttcgcc ggatttgcgc agtcgcgcta tgccagcggc gactatttta
     5821 cgcagtattt acaggacgac tggcaaccga aaacggcgaa agtcagggcg ctatttgccc
     5881 gcagcggcat tacgctgccc acacgcgaaa tgtggctaaa gctgcgcgac gatgtgatgc
     5941 gctatggcat ctataaccaa aatttgcagg cggtgccgcc gaccggttcg atttcttaca
     6001 ttaatcatgc gacctccagc attcatccga ttgtggccaa aattgagatt cgcaaagagg
     6061 gcaaaaccgg gcgtgtgtat taccccgcgc cgtttatgac taatgaaaac ctggacatgt
     6121 atcaggatgc ttacgatatc ggtccggaaa aaattattga tacctatgcc gaggccacgc
     6181 gccacgtcga tcaaggactg tcgctcaccc tgtttttccc cgataccgcc acgacccgcg
     6241 atatcaacaa agcgcagatc tatgcctggc gaaaaggtat taagtcactg tattacatcc
     6301 gacttcgcca gttggcgctg gaaagtactg aaattgaagg ctgcgtatcc tgcgcgctat
     6361 aaggaaagcc atatgaaatt atctcgtatt agcgccatca actggaacaa gatccaggac
     6421 gacaaagatc tggaggtgtg gaaccggctg accagtaact tctggctgcc ggaaaaagtg
     6481 ccgttatcga atgatattcc ggcctggcag acgctgagcg ccgccgaaca gcagctcacc
     6541 attcgcgtgt ttacgggtct tacgctgctc gacactatcc agaacatcgc aggcgcgccg
     6601 tcgttaatgg cagatgccat cacgccgcat gaagaggccg tactgtcgaa catcagcttt
     6661 atggaagcgg tacacgcccg ctcttacagt tctattttct ccacgctgtg ccagacgaaa
     6721 gaggttgatg ccgcctacgc ctggagcgaa gaaaacccac cgcttcagcg taaggcgcag
     6781 attattttag ctcattacgt cagcgatgaa ccgctaaaga aaaagattgc cagcgtcttt
     6841 ttagagtctt ttctgttcta ttccggcttc tggttgccga tgtatttctc cagccgcggt
     6901 aagctcacga acactgccga cctgattcgt ttaatcattc gcgatgaagc ggttcacggt
     6961 tattatattg gctataagca tcagatagcg ctacaaaaac tatcggcaat cgagcgtgaa
     7021 gagttaaagc ttttcgcgct ggatttattg atggaactgt acgacaacga aatctgctac
     7081 acagaagcgt tatatgcgga aaccggctgg gttaacgacg tcaaagcctt cttgtgctac
     7141 aacgccaata aagccttaat gaacctgggt tatgaggcgt tatttccgcc ggagatggca
     7201 gacgtgaatc ccgcaatcct tgccgcgctc tcgccgaatg ccgacgaaaa ccatgatttc
     7261 ttttccggct caggttcatc ttatgtgatg gggaaaacgg tcgaaaccga agacgaagac
     7321 tggaattttt aaccttgcgg gcatgggaaa taacgttaca ttttccatgc ctttatttca
     7381 agcaataccg ggttaaatcg cgcaaatatt acaacatgtc ctacactcaa tacgagtgac
     7441 attattcacc tggattcctc caattcaggt ggatttttgc tggttgtctc aaaaaatatc
     7501 tctccctccc cattcgcgtt cagcccttat atcatgggaa atcacagccg atagcacctc
     7561 gcaatattca tgccagaagc aaatt
//
LOCUS       DAJVSD010000216         7575 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.216, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000216 DAJVSD010000000
VERSION     DAJVSD010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7575
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.216"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(199..1227)
                     /gene="epmB"
                     /locus_tag="OQP62_003623"
     CDS             complement(199..1227)
                     /gene="epmB"
                     /locus_tag="OQP62_003623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HCS1723061.1"
                     /translation="MAHIVTLNTPLREDWLAQLADVVTNPDELLHLLQIEADENLRAR
                     QDARRLFALRVPRAFIARMEKGNPDDPLLRQVLTSRDEFIVAPGFSTDPLEEQHSVVP
                     GLLHKYQNRALLLVKGGCAVNCRYCFRRHFPYAENQGNKRNWTVALEYIAAHPELDEI
                     IFSGGDPLMAKDHELDWLLTQLEAIKHVKRLRIHSRLPIVIPARITDELVARFDQSCL
                     QILLVNHINHANEVDEAFCLAMKKLRHVGVTLLNQSVLLRGVNDNAQTLANLSNALFD
                     AGVMPYYLHVLDKVQGAAHFMVTDDEARQIMRELLTLVSGYMVPRLAREIGGEPSKTP
                     LDLQLRQC"
     gene            1268..1834
                     /gene="efp"
                     /locus_tag="OQP62_003624"
     CDS             1268..1834
                     /gene="efp"
                     /locus_tag="OQP62_003624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HCS1723062.1"
                     /translation="MATYYSNDFRSGLKIMLDGEPYAVESSEFVKPGKGQAFARVKLR
                     RLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGD
                     NAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGA
                     VVKVPLFVQIGEVIKVDTRSGEYVSRVK"
     gene            1895..2029
                     /locus_tag="OQP62_003625"
     CDS             1895..2029
                     /locus_tag="OQP62_003625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463199.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="entericidin A/B family lipoprotein"
                     /protein_id="HCS1723063.1"
                     /translation="MMKRFIGLVALVLLTGTLLTACNTARGFGEDIQHLGHAISRAAS
                     "
     gene            2137..2283
                     /gene="ecnB"
                     /locus_tag="OQP62_003626"
     CDS             2137..2283
                     /gene="ecnB"
                     /locus_tag="OQP62_003626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein toxin entericidin B"
                     /protein_id="HCS1723064.1"
                     /translation="MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGSAISGAAT
                     RAQQ"
     gene            complement(2314..2901)
                     /locus_tag="OQP62_003627"
     CDS             complement(2314..2901)
                     /locus_tag="OQP62_003627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1723065.1"
                     /translation="MLKILVIDRCHFTRTGMEAWLNHTDVLSSSLLVSGMNNLILAKE
                     HILQWKPHLVIADLYGFLNDALPEQPINAFFAACRMTPLVLLQSGNMPYRSQYASHAV
                     LSKHTPLHELAQRIKGALYTHPLQEAPESATPLLSPQEEKVLAMWTEGTSNKEIAYAL
                     GIHGKTVYTYKRNIRMKLHMDNRYSPFLMLPEKID"
     gene            3157..3474
                     /gene="sugE"
                     /locus_tag="OQP62_003628"
     CDS             3157..3474
                     /gene="sugE"
                     /locus_tag="OQP62_003628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound efflux SMR
                     transporter SugE"
                     /protein_id="HCS1723066.1"
                     /translation="MSWIILLIAGLLEVVWAVGLKYTHGFSRLTPSIITITAMVISMA
                     LLSWAMKTLPVGTAYAIWTGIGAVGAAITGILLLGESASPARLLSLGLIVAGIIGLKL
                     SAH"
     gene            complement(3491..4024)
                     /locus_tag="OQP62_003629"
     CDS             complement(3491..4024)
                     /locus_tag="OQP62_003629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HCS1723067.1"
                     /translation="MRLLPVVAAVTAAFLVVACSSPTPPKGVTVVNNFDAKRYLGTWY
                     EIARLDHRFERGLEQVTATYSLRDDGGINVINKGYNPAREMWQKTEGKAYFTGSPNRA
                     ALKVSFFGPFYGGYNVIALDREYRHALVCGPNRDYLWILSRTPTLSEEIKQQMLAVAT
                     REGFDVNKLIWVKQSGS"
     gene            complement(4136..4495)
                     /gene="frdD"
                     /locus_tag="OQP62_003630"
     CDS             complement(4136..4495)
                     /gene="frdD"
                     /locus_tag="OQP62_003630"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HCS1723068.1"
                     /translation="MINPNPKRSDEPVFWGLFGAGGMWGAIIAPVIVLLVGIMLPLGL
                     FPGDALSFERVLTFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFY
                     GLAAILTVVTAIGVITL"
     gene            complement(4506..4901)
                     /gene="frdC"
                     /locus_tag="OQP62_003631"
     CDS             complement(4506..4901)
                     /gene="frdC"
                     /locus_tag="OQP62_003631"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HCS1723069.1"
                     /translation="MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELI
                     FGLFALKHGAESWMGFVGFLQNPVVVILNLITLAAALLHTKTWFELAPKAANIIVKDE
                     KMGPEPIIKGLWVVTAVVTVVILYVALFW"
     gene            complement(4912..5646)
                     /gene="frdB"
                     /locus_tag="OQP62_003632"
     CDS             complement(4912..5646)
                     /gene="frdB"
                     /locus_tag="OQP62_003632"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur protein"
                     /protein_id="HCS1723070.1"
                     /translation="MAEMKNLKVEVVRYNPETDTAPHSAFYEVPYDETTSLLDALGYI
                     KDNLSPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTNGMKVEALANFPIERD
                     LVIDMTHFIESLEAIKPYIIGNSRTPDQGPNVQTPAQMAKYHQFSGCINCGLCYAACP
                     QFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSPNGVWTCTFVGYCSEVCPKH
                     VDPAAAIQQGKVESSKDFLIATLKPR"
     gene            complement(5639..7429)
                     /gene="frdA"
                     /locus_tag="OQP62_003633"
     CDS             complement(5639..7429)
                     /gene="frdA"
                     /locus_tag="OQP62_003633"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HCS1723071.1"
                     /translation="MQTFQADLAIIGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS
                     HTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLEQWGC
                     PWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLD
                     ILVDDNHARGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL
                     SHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLG
                     EPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVHLDLRHLGEKKLHERLPFICE
                     LAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCESRVKGLFAVGECSSVGLHGANRL
                     GSNSLAELVVFGRLAGEQAMERAATAGAANSAALDAQVADIEQRLKNLVNQEGNENWS
                     KIRDEMGLSMEEGCGIYRTPELMQKTVDKLAELQERFKRVRISDTSSVFNTDLLYTIE
                     LGHGLNVAECMAHSALARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEY
                     SDVKITTLPPAKRVYGGEAEAADKKEKANG"
BASE COUNT         1742 a         2004 c         1990 g         1839 t
ORIGIN      
        1 aggagaacca gtataattcg aaaatgcagt acacgctaag cgagtcctaa aacggacttt
       61 attgaaaaga gagtatcgga aaggtgtatt taacgaaggt tagtttatcc tcgccagagg
      121 gtgaggagaa tcgcggggga atctcctcgt gatattgcgc ggtaatattt ttcgtcgtcc
      181 ctgacgcgcc cgcgaggatt agcactgccg aagctgtaaa tccagcggtg ttttgctcgg
      241 ttcgccgccg atttcacgcg ccagtcttgg caccatatag ccggatacca gcgtgagcag
      301 ttcgcgcatg atttgccggg cttcgtcatc ggtgaccata aaatgcgcgg cgccctgcac
      361 tttatccagc acatgcaggt aatagggcat cacgccggcg tcaaatagcg cgttgctcag
      421 attcgccagc gtttgcgcgt tatcattcac gccacgcagc aggacgctct ggttgagaag
      481 cgtgacgccc acgtggcgca gtttcttcat cgccaggcag aacgcctcgt ccacttcatt
      541 ggcgtggttg atatggttca ccaacaaaat ttgcagacat gactggtcaa agcgggcgac
      601 cagttcgtca gtaatgcgtg ccgggataac gataggcaac cgactgtgga tgcgtagccg
      661 cttgacgtgc ttaatggctt ccagttgcgt gagcagccag tccagctcat gatctttcgc
      721 catcagcgga tcgccgccgg aaaagatgat ctcatccagt tccgggtgtg cggcgatata
      781 ctccagcgcg actgtccagt tgcgcttatt gccttgattc tccgcatacg ggaagtgacg
      841 acggaaacag tagcggcaat ttaccgcaca tccgcctttt accagcaata gcgcccggtt
      901 ttggtattta tgcaataatc ctggcaccac gctgtgttgc tcttccagcg ggtcggtgga
      961 gaaaccgggg gcgacaataa attcatcccg ggacgtcagc acttgacgta aaagaggatc
     1021 gtcagggttg cccttctcca tgcgcgcaat aaaagcgcgc ggcacgcgga gggcaaacaa
     1081 gcgcctggcg tcctgtcttg cccggaggtt ttcatcagct tcaatctgta aaagatgcag
     1141 cagttcgtcg ggattggtca caacatcggc aagttgcgct aaccaatctt ctcgcaatgg
     1201 ggtatttagg gttacaatat gcgccatttt gtggcttagc taccagttaa caatttcaga
     1261 gggccttatg gcgacttact atagcaacga ttttcgttcc ggtcttaaaa tcatgttgga
     1321 tggcgaacct tatgcggttg aatccagtga attcgtgaaa ccgggtaaag gccaggcgtt
     1381 tgcccgcgtt aagctgcgcc gtctgctgac cggcacgcgc gttgagaaaa ccttcaaatc
     1441 gaccgattcc gctgaaggcg cggatgtagt cgatatgaac ctgacttacc tgtacaacga
     1501 tggtgagttc tggcatttca tgaacaacga aaccttcgaa cagctgtctg cagatgccaa
     1561 ggctattggc gacaacgcaa aatggctgtt ggatcaggcg gaatgcatcg taaccctgtg
     1621 gaacggtcag cctatctctg tcactccgcc gaactttgtt gaactggaaa ttgttgatac
     1681 cgacccaggt ctgaagggcg ataccgcagg tactggcggc aaaccagcca cgctgtctac
     1741 tggcgcagtg gttaaagttc cgctgttcgt gcagattggc gaagtgatca aagtcgatac
     1801 ccgttccggc gaatacgtat cccgcgtaaa ataatttacg ttatcgggaa aaatggtgca
     1861 gcgtatgctg cgccatccta tttttcgcgc ctcaatgatg aaacgcttta tcggccttgt
     1921 cgcgctggtt cttcttaccg gcacattatt aacggcatgt aataccgccc gcggcttcgg
     1981 cgaagatatt cagcatcttg gccacgccat ctcccgcgca gccagctaat cgcttctcgt
     2041 cttcctaaaa ttagtcgatc gcccgtcatt ttctgggatg ttgtctatta ttaagttgct
     2101 atacacaaac aacattggct agaaaaggaa gacattatgg ttaaaaagac aattgcagcg
     2161 atcttttctg ttttggtact ttccactgta ttaactgctt gtaataccac gcgcggcgtg
     2221 ggcgaggaca tctcggacgg tggtagtgcg atctctggcg ctgcaaccag agctcagcag
     2281 taatcatcaa cggtacggca tggcgtcgta ccgttaatcg attttctccg gaagcataag
     2341 aaagggagaa taccggttat ccatatgaag tttcatacgg atattacgct tataggtgta
     2401 aaccgttttt ccgtgaatgc caagcgcata cgcaatctct ttattgctgg tgccttccgt
     2461 ccacatcgcg agcacttttt cctcctgcgg agagagcaat ggcgtggcgc tttccggcgc
     2521 ttcctgcagt ggatgagtat atagcgctcc tttaattcgt tgtgcaagct catgtaaagg
     2581 cgtgtgttta gataacaccg catggctggc atattgcgat ctgtacggca tattccctga
     2641 ctgtaataat actaacggcg tcatcctgca ggcggcaaaa aatgcattga taggctgctc
     2701 gggtaaggca tcgttgagaa aaccatataa atcagcgata accagatggg gcttccattg
     2761 cagaatatgt tctttcgcca gtataaggtt attcatcccg gataccagca gtgaagaact
     2821 gagcacatca gtgtgattaa gccaggcctc catgcccgta cgggtaaagt ggcatcggtc
     2881 tatcactaaa attttcaaca tagttttttg tacccggaag tagtaaagca ctttctttcc
     2941 cagaaggcgt tccatcatag agaactcctg tgggcgctaa atgcgaaaac tacgcggctt
     3001 aaaagggcca attcccgcct ttagacggaa aaaaataaaa aggttgaaat tcattttctc
     3061 tcaggcaaga atggcttttc atccgtatac gttacaggac gacctgtaaa cgctattctc
     3121 accggggacg gccccattaa ttatctggag cctgctatgt cctggatcat tttattaatc
     3181 gctggtttac ttgaagtggt atgggctgtc ggcctgaagt atacccacgg tttttctcgt
     3241 ctgaccccca gtattatcac cattacggcc atggttatca gtatggcgtt actttcctgg
     3301 gcaatgaaaa cgctgcctgt tggaacggcg tacgccatct ggaccggcat cggcgccgtt
     3361 ggggcggcaa tcaccggtat ccttctgctg ggcgagtctg cctcaccggc gcgtttgctc
     3421 agtcttggct tgatcgtcgc gggtatcatt gggctaaaac tcagtgcgca ttaattcgtc
     3481 gctgacattg ctacgaacct gattgtttta cccaaattaa tttattgacg tcaaacccct
     3541 cccgggtcgc gacggccagc atttgctgtt ttatttcctc agaaagcgtt ggcgtgcgag
     3601 agagtatcca cagatagtcg cgattcgggc cgcacaccag cgcatgacgg tattcccggt
     3661 caagcgcaat cacgttatag ccgccgtaga acgggccgaa aaaagagacc ttgagcgcgg
     3721 cgcggtttgg actaccggta aaatacgctt tgccttctgt tttttgccac atttcccgag
     3781 ccgggttata gcctttattg atgacattaa tcccgccatc gtcacgcaga ctataggtgg
     3841 ccgtgacttg ttccagtcca cgttcaaatc gatgatcgag gcgtgcgatc tcataccagg
     3901 tgccgaggta acgtttggca tcaaagttat ttaccacggt aacgccttta ggcggggtag
     3961 gcgaactaca ggcgacaacc aaaaatgccg cagtaaccgc agcaacgacg ggcagcaagc
     4021 gcatagcgtt tttccttcca gtgttttttc taagtgtaga acctggcggg aaaatgagag
     4081 gcaggaaaag aaaaaatgcc ctcttatcgg gtagataaga gggcgtcgtg gcaacttaga
     4141 gagtgataac gccaatcgcc gtcacaacgg tcaggattgc cgccagaccg tagaagaccc
     4201 atttgcccgc aggcacgtgg attttcaggt catgcatcgc gtggtgcata cggtgtaggc
     4261 cacaccatag cggtagcacg atcatcagga acagaaaaac gcgaccaata aagctttggg
     4321 cgaacgtcag tacgcgctca aaactcaggg catcgcccgg aaatagcccc agcggcagca
     4381 tgatgccaac cagtagcacg atcaccggcg cgatgatcgc gccccacata ccgcctgcgc
     4441 caaacagtcc ccagaatacg ggttcatcag aacgttttgg gtttggatta atcatccggg
     4501 actccttacc agaacagggc aacatacaga atgactacgg tgactaccgc agtgaccacc
     4561 caaagccctt tgatgattgg ctctggcccc attttttcgt cttttacaat gatattggcc
     4621 gccttcggcg ccagttcaaa ccaggttttg gtgtgcagca gcgcggccgc cagggtgatc
     4681 aggtttaaga tcactaccac cgggttttgt aaaaagccga cgaatcccat ccaggattcc
     4741 gcgccgtgtt tgagcgcaaa cagaccgaaa atcagttcaa tactgaacca gactgccggc
     4801 accgctgtgc cttcgcgcag catataaaag cgataaaacg gcagtttttt ccaccaggtg
     4861 gacgtcatcg gccgcacata gggtttgcgt ttagtcgtca tgttgcactc cttagcgtgg
     4921 tttcagggtg gcgataagaa agtctttcga gctttccact ttaccctgct gaatggccgc
     4981 agccggatcg acatgttttg gacagacttc ggagcagtag cccacgaaag tacaggtcca
     5041 tacgccgttc ggactgttca actgcgccat acgctccttc ttaccgtgat cgcggctatc
     5101 ttcgttatag cgatgcgcca gcgtaatcgc agccggtccg ataaactcag gattcagacc
     5161 gaactgcggg cacgcggcat agcacagacc acagttgatg caaccggaga actggtgata
     5221 cttcgccatt tgcgccgggg tctggacatt cggcccctga tctggcgtgc gagagttgcc
     5281 aataatgtac ggtttgatcg cttccaggct ttcgataaag tgcgtcatat cgataaccag
     5341 atcgcgctca atcgggaagt tcgccagcgc ttccaccttc ataccgttgg tgtaatcgcg
     5401 caggaaggtt ttacacgcca gtttaggaac gttgttgacc atcatgccgc aggagccgca
     5461 gatcgccata cggcaggacc agcggtagct caggtctggc gacaggttat ctttgatgta
     5521 gcccaacgcg tccagtagcg atgttgtttc atcataagga acttcataga aagcactgtg
     5581 cggcgcggta tcggtttccg ggttatagcg caccacctca actttcaggt ttttcatctc
     5641 agccattcgc cttctccttc ttatcggctg cttccgcttc accgccgtaa acacgtttgg
     5701 ctggcggcag ggtggtgatt ttcacgtcgc tgtattccag gcgggtcgtg ccatcagcat
     5761 cgcggaaggc gagggtgtgc ttgaggaagt tcacatcgtc gcgctcggta cagccttcat
     5821 ccagacgctg atgcgcgccg cgggactctt tacgcgccag cgcagagtgc gccatacatt
     5881 ccgccacgtt cagaccatga cccagttcga tggtatacag caggtcagtg ttgaacacgc
     5941 tggaagtatc ggagatacgt acgcgcttga aacgttcctg aagctcggcc agtttatcaa
     6001 cggttttctg catcagttcc ggggtacggt aaataccgca accttcttcc atagacagac
     6061 ccatctcatc gcggatcttc gaccagtttt cgttgccttc ctggttcacc agatttttca
     6121 gacgctgttc aatatcggca acctgggcgt cgagcgcggc gctatttgcg gcgcctgccg
     6181 tagcagcgcg ttccattgct tgttcgccag ccagacgacc aaacaccacc agttccgcca
     6241 gtgagttgga accgaggcgg ttcgcgccat gcaggccaac agaggagcat tcgccaacgg
     6301 caaacagccc tttgacacgg ctttcacagt tctggtcggt ttcaatgccg cccatggtgt
     6361 agtgcgcggt cggacgtact ggaatcggtt ctttaaccgg atcgacgccg acataggctt
     6421 tcgccagttc gcaaatgaac ggcagacgtt catgcagttt cttctcgccg agatgacgca
     6481 ggtcgaggtg aaccacatcg ccgcgcggcg tggagatggt gttgccttta cgccattcgt
     6541 gccagaaagc ctgggatact ttgtcgcgcg gccccagttc catatatttg tttttcggct
     6601 cgcccagcgg cgtttcgggg cccatgccgt agtcttgcag gtaacggtag ccatttttat
     6661 tgaccagaat accgccttcg ccgcggcaac cttcagtcat caggataccg gaacctggca
     6721 ggccggtcgg gtgatactga acgaattcca tatcacgcag cggaacgccg tggctcagcg
     6781 ccatgcccat cccgtcgccg gtgacgatgc cgccgttggt gttatagcgg tatacgcggc
     6841 ctgcgccgcc tgtcgccatg accacggcgt tggcgcggat ttgtaccagc gtgccttcca
     6901 tcatgttcat tgccaccagg ccgcgcgcat ggttgtcatc aaccagaata tccagcacaa
     6961 aatgttcgtc aaagcgctgg atttgcggga actgtaggga agtctggaac agggtatgca
     7021 gcatatggaa gccggtttta tccgcggcga accaggtacg ctcgattttc ataccaccga
     7081 agcgacgcac gttaacgcta ccgtccggac ggcggctcca cgggcagccc cattgctcca
     7141 gctgcgtcat ctcagtggga caatggtgga caaagtaatc cacgacatcc tgctcacaca
     7201 gccagtctcc gcctgctacc gtatcgtgaa aatggtagtc aaagctgtca tgatcctggg
     7261 cgacagcggc tgaaccccct tcggcagcga cggtgtggct gcgcatcggg tacacttttg
     7321 agatcagtgc gattttagca ttgggattcg cctgtgcggc agcaattgca gcacgtaatc
     7381 ccgcgccacc agcgcctata atggcaagat cggcttgaaa ggtttgcacg acattcctcc
     7441 agattattgt aatttcaccc tcgcgcagcc agataaagcc tctgggttct gcgaagtatg
     7501 aatgcgtttc cactgctcct ttatgggtac aacagtatag tctcagggat gtgagggaaa
     7561 tttgacgtgt tcgat
//
LOCUS       DAJVSD010000217         7452 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.217, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000217 DAJVSD010000000
VERSION     DAJVSD010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7452
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.217"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            276..1229
                     /gene="sopD"
                     /locus_tag="OQP62_003634"
     CDS             276..1229
                     /gene="sopD"
                     /locus_tag="OQP62_003634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system effector SopD"
                     /protein_id="HCS1723072.1"
                     /translation="MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHF
                     RAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIK
                     MDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTW
                     HPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACI
                     NAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQ
                     DYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT"
     gene            complement(1317..2051)
                     /gene="cysH"
                     /locus_tag="OQP62_003635"
     CDS             complement(1317..2051)
                     /gene="cysH"
                     /locus_tag="OQP62_003635"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase"
                     /protein_id="HCS1723073.1"
                     /translation="MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENL
                     PGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLK
                     VYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQ
                     SGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWAQGYLSVGDTHTT
                     RKWEPGMAEEETRFFGLKRECGLHEG"
     gene            complement(2127..3839)
                     /gene="cysI"
                     /locus_tag="OQP62_003636"
     CDS             complement(2127..3839)
                     /gene="cysI"
                     /locus_tag="OQP62_003636"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001290736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     hemoprotein subunit"
                     /protein_id="HCS1723074.1"
                     /translation="MSEKYPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGF
                     KGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKF
                     AADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSN
                     PYESELHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKT
                     TVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGY
                     LPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPI
                     RPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRI
                     TANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERF
                     LPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGN
                     RIGSRIPRMYQENITEPDIQASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPAR
                     DFWE"
     gene            complement(3839..5638)
                     /gene="cysJ"
                     /locus_tag="OQP62_003637"
     CDS             complement(3839..5638)
                     /gene="cysJ"
                     /locus_tag="OQP62_003637"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent assimilatory sulfite reductase
                     flavoprotein subunit"
                     /protein_id="HCS1723075.1"
                     /translation="MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGFFWGVL
                     NPRSGAVAVTPAPDGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYK
                     FKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEF
                     FCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRACVVDVLKSRAPVAVPSQSV
                     ATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDAL
                     GVWYQNDPALVKELVELLWLKGDEPVMVDGKTLPLAEALEWHFELTVNTANIVENYAT
                     LTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIAS
                     AQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPAN
                     PQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKE
                     GLLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKAL
                     LEVIAEFGGMDLESADEYLSELRVERRYQRDVY"
     gene            6074..6436
                     /gene="queD"
                     /locus_tag="OQP62_003638"
     CDS             6074..6436
                     /gene="queD"
                     /locus_tag="OQP62_003638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HCS1723076.1"
                     /translation="MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEV
                     DPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLL
                     SAVMVKETCTAGCVYRGE"
     gene            complement(6526..7323)
                     /locus_tag="OQP62_003639"
     CDS             complement(6526..7323)
                     /locus_tag="OQP62_003639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HCS1723077.1"
                     /translation="MALRIRVLLENHKGAGTDKSLKARPGLSLLVEDESTSILFDTGP
                     DGSFMQNASAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPNIARERYAAIT
                     FLGITRKIKKLSCEVDYSRYRMMYTCGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAE
                     PDSILDEGVLIYQSTKGLVIIMGCGHRGIANIVRHCQNITGIKRIYALIGGFHLRCAS
                     PFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF"
BASE COUNT         1792 a         2012 c         1854 g         1794 t
ORIGIN      
        1 aatttaacta cttcatttca tcatacttta tctctcagca tcaacaccat ccatgacaaa
       61 ccaaaatttt aaaaaaacga ccatttgcgg cgaatcatct accttttgtc tgaattatcg
      121 tcaccacaaa ggattaccaa ccataaatgt gctgtattga taatgccgtt cacattctct
      181 cctgtagtaa accttgtctg tttaataaaa aagagcgaat tgaacgatat attttactcc
      241 ggatattgaa taatataaat ttgaaggaaa atattatgcc agtcacttta agcttcggta
      301 atcatcaaaa ttatacgctt aatgaaagtc ggcttgctca tctgttaagc gcagataaag
      361 aaaaagcaat ccatatgggg ggctgggata aagtccagga tcattttaga gcggaaaaaa
      421 aggaccatgc gctggaagtg ttacactcca tcattcacgg gcagggccgt ggtgaacctg
      481 gagagatgga agttaacgta gaggatatca ataaaattta cgcctttaaa cggctacaac
      541 atctggcctg cccggctcat caggatctgt ttactatcaa gatggacgct tctcagacac
      601 aatttttact tatggtcggc gacacggtga tcagccaaag caatattaag gacatcctca
      661 atatatcaga tgatgcagtg atagaatcta tgagtagaga agagagacag ttatttttac
      721 aaatatgcga ggtgattggt gcgaagatga cctggcaccc ggaattactt caggagtcga
      781 tttctactct acgaaaagaa gtgacgggca atgcacaaat caaagcggcg gtttatgaga
      841 tgatgcgtcc cgcagaggct ccagaccacc cgcttgtcga atggcaggac tcgcttactg
      901 aagatgaaaa atcgatgctg gcctgtatta atgccggtaa ctttgagcct acaactcagt
      961 tttgcaaaat aggttatcag gaggtacaag gtgaagtcgc ttttagcatg atgcatccgt
     1021 gcatctccta tttactacat acctattcac cgtttgcaga gtttaaacca acaaattccg
     1081 gttttttaaa aaaacttaat caggattata acgactacca tgcaaaaaaa atgtttattg
     1141 atgtaattct tgaaaagcta tatctaacgc atgaacgttc tttgcacatt ggtaaagatg
     1201 ggtgcagtcg taatatatta ctgacataaa gatagccagt aatataacca atttaaaatc
     1261 cggctgcctg ccggatttta catagcagca agtataatca taccgcgtaa ggacaattac
     1321 ccttcatgca gcccgcactc acgtttcagt ccgaagaagc gtgtctcttc ttccgccata
     1381 cccggctccc atttgcgggt ggtgtgcgta tcgcccaccg acagatagcc ctgagcccac
     1441 agcggatggt atttcagacc gtgcttttgc agatactggt aaaccgtgcg gttatcccag
     1501 tcgataatcg gtagcacttt aaacacgccg cgctggatag cgagaacggg taaatgcgcg
     1561 cggctaccgg actgctcgcg acgcagaccc gcaaaccagg tctgcgcgtt taactctttg
     1621 agcgcccggt tcatcggctc gactttgttg atctcattgt atttctcaat gccctcaacg
     1681 ccctgctccc acagcttgcc gtagcgcgct tcctgccagg ccggactttc gcccgcgcgg
     1741 taaactttca ggttgagttt gagtttgtcc gttagctcat caataaactg ataggtttcc
     1801 gggaacaaat agccggtatc ggtgaggatc accgggatat ccgggcgaat ctggttcacc
     1861 aggtgcaggc tcaccgccgc ctggatacca aagcttgagg agagcacgta ttcgccgggc
     1921 agattttcca gcgcccaagc cacgcgttct tcggcagtca gcgtttccag ttgagcgttg
     1981 gtttccgcca acgccagtac gcgatcgact tttggcagtt cattcaatgc gttgagatcg
     2041 agttgggaca taagttcctc actgtttgcc ttgcctgatg gcgctgtgct tatcaggcct
     2101 acacagacgc catccggcaa ttcaggttat tcccagaaat cacgcgcggg atcgagcacc
     2161 gggcgaatga tgcccgcacg caccgtaaag tcgccgaagc cttcacccgc ttcacgctct
     2221 ttcgcccagc gcccaatcag ttcatccagc gaagcctgaa tatccggctc ggtgatattt
     2281 tcttgataca tccgtggaat acgactcccg atgcggttgc cgccaagatg caggttataa
     2341 cgaccaggcg ctttccctac taagccaatt tccgccagca tcgcgcgacc acagccgttc
     2401 gggcagccgg tcacgcgcat cacgatatgc tcatcaggaa tgccgtgttt ttccagaatc
     2461 gcttccactt tgtcagtaaa cgacggtagg aaacgctcgg cttccgccat cgccagcggg
     2521 caggtcggga acgacacgca ggccattgag ttttcacgct gcgcgctcac cgcattcatc
     2581 agcccatgat cgcgcgccag tttctcgatc ttcgctttct ggctttccgg cacgctggca
     2641 ataatcaggt tctggttagc ggtaatacgg aactcgccct gatgaatctt cgcgatctcc
     2701 agcaggccgg ttttcagcgg acgccccgga tagtccagga tacgaccgtt ttcgataaac
     2761 agcgtcaggt gccatttatc atcaatgcct ttcacccagc caatcctgtc gccacgcccg
     2821 gtaaattcat acggacgaat gggttcaaat gtgatccccg cgcgacgctc gacttccgct
     2881 ttaaacgtct ccagtcccac acgctcaagg gtgtatttgg ttttggcgtt tttacggtcg
     2941 gtacggttac cccagtcgcg ctgcgtagtc accaccgctt ccgccaccgc cagggtgtgc
     3001 tccagcggca gatagccaaa ctcgctcgcg gtacgagcgt aggttttctt attaccgtgc
     3061 tcaatagaca gaccgccgcc caccagcagg ttaaagccga ccagcttgcc gttctcggca
     3121 atcgccacga agttcatgtc gttggcgtgc agatcgatat cgttttgcgg cgggatcact
     3181 accgtggttt tgaacttacg cggcagatag gtctgtccga ggatcggctc ttcatcggtg
     3241 gtcgccacct tctcctgatc gagccagatc tccgcatacg cacgagtgcg cggcagcaga
     3301 tgttcggaga tcttcttcgc ccattcgtag gcttccgcgt gcagctcgga ctcatacggg
     3361 ttagaggtac acagcacgtt acggttcata tcgttggcgg tcgccagcgc gtccagcccc
     3421 accgaatgca gcatctggtg caccggctta acgttcttct tcagaatacc gtggaactgg
     3481 aaggtctgac ggttggtcag acggatactg ccataaatcg tgttatccgc cgcgaattta
     3541 tcgatcgcct gccattgcgt cgtagtaatc accccgcccg gcaggcggca gcgcagcagc
     3601 atggcgtggc gcggctccag cttctgcgcc gcacgctcgg cgcgaatatc gcggtcatcc
     3661 tgctgataca tgccatgaaa gcgtattagc aggaagttgt cgcctttaaa accgccggtg
     3721 agaccgtcgt tcagatcttc cgcaatggta ccgcgcaggt agttgctttc cagcttcatg
     3781 cgctcggcat cggacagttt accttcgacc accagtgggc ctggatattt ttcgctcatt
     3841 agtagacatc tcgctgataa cggcgctcta cgcgcagctc acttaaatat tcatctgccg
     3901 attcgaggtc cataccgccg aattcagcga tcacttccag caatgctttt tcgacatctg
     3961 cggccatgcg cctggcgtcg ccgcagacat aaatgtgggc gccatcattg atccagcgcc
     4021 acagctccgc gccctgttca cgcagcttgt cttgtacgta aattttttct ttttgatcgc
     4081 gggaccaggc gagatcgata cggcttaaca gtccctcttt cacgtagcgc tgccactcca
     4141 cctgatagag gaaatcttcg gtaaagtgcg ggttgccgaa gaacagccag ttcttgcctt
     4201 ccgcgccatc ggcggcacgc tgttgcataa aggcgcggaa cggcgcgatg ccggtgccgg
     4261 ggccaatcat gatcaccggc gtttgcgggt tcgctggcag gcggaagtta tcgttatgct
     4321 caataaagac gcgaacttcg ccctcttctt ccacgcggtc ggcgaggaag ctggaagcgc
     4381 cacccgcgcg ggcgcggcct tcgatatcat agcgaaccac gccaacggtg atatgcactt
     4441 cactctccac ttcagcctgt gcggaggcga tggagtacag acgcggcgtc agcgggcgca
     4501 gcaggtcgat tagcgcctga gcatccagct gcgccggaga gaaacgcacc atatcaacga
     4561 tcggcgtggt cgcggcgtaa tgctggagct gcgctttgtc acccactaat ggcaacagcg
     4621 actcactgcg cgtcagggtc gcgtagttct caacaatgtt ggcggtattc accgtcagct
     4681 cgaagtgcca ctccagcgct tcggcgagcg gcagggtttt accatcaacc atcaccggct
     4741 catcgccttt cagccacagc aactcaacca gttccttcac cagagccgga tcgttctgat
     4801 accagacgcc cagcgcatcg cccggctggt aacgcagacc ggagtcgcct aaatcaatct
     4861 caatatgacg aacgtctttt tccgagttgc gaccggtgat tttctgattc acggagaggg
     4921 tcgcggtcag cggcgcgtct ttggtatagg ggctggtgtg gatgtcgttt accgcgccag
     4981 tagcgacgga ttgcgaaggt accgcgacag gtgcacggga cttcagaaca tcaaccacgc
     5041 aggcgcgcca ttcgctggca gctgcctgat attcaacgtc agcatcgaca cggtcgagca
     5101 gacgctcacc gcccagttcc gccagtttgc tgtcgaaatc ttttccggac tggcagaaaa
     5161 attcataaga ggtgtcgccg aggctaaaca cggcaaaagc ggtgttttct agtttcggcg
     5221 cttttttcga gaacaggaac ttatgcagcg cgacagcctc ttccggcggc tcgccttctc
     5281 cctgggtgga cgtcactatc accaacagtt tttcactggc aatctgtttg aatttgtagt
     5341 cgccggcgtt caccagagtc acattaaggt tggccgccag cagatcatca cgcagcgctt
     5401 ccgccacacg acgcgcattg ccggtttgcg aagcggagat aagcgtaact cccggcatct
     5461 tcccatcagg agcaggcgtg acggcaacag cgcctgagcg cgggttcagt acgccccaaa
     5521 aaaagccgga gacccaggca agctgttcgg gagtaaggtc ggttgtcgcg gcctgaaggc
     5581 gcgccagttg ctccggatta agcggaagca acccagtcag tggagccggt gtcgtcatgc
     5641 gtcgttatgt tccagtaagc aaagcggatc tatacacaaa atcattcaag ttcgctgtag
     5701 cccagactgt aagctgatcg cgccccagga gcgtacataa atacgtgact ggggcgagta
     5761 aacgcagtca acacaaatgc ggcttgaagg atgaagtgta taagcgataa atcccaaact
     5821 aaggataagg gtaacggtga gaggaataac aattaaagaa gggttggaaa taacaaataa
     5881 ccaaatgaac taacctgttt tagttatcgt tattaacgcc aaaatcgatt tcataattga
     5941 ttgataatta ttaaattttc tggaaattct taaattaatt gcccgttaca aggcggagaa
     6001 tggttttagt taatgataaa aaatgcgctt tccggtaccc tacagcggtt tttttattgc
     6061 ctgagagttc atcatgtcca ccacgttgta taaagatttc acctttgaag ccgctcaccg
     6121 cctgcctcac gtgcctgaag ggcataagtg cggccgcctg cacggacact catttatggt
     6181 gcgtctcgag attaccggtg aagtcgatcc gcataccggt tggattatgg atttcgcgga
     6241 tctcaaagcg gcgtttaaac ctacttacga tcgtcttgat cactactatc tgaatgatat
     6301 tccaggactg tccaatccca ccagcgaagt gctggcaaaa tggatttggg atcaggttaa
     6361 gcccgtcgtg ccgctactga gcgccgtgat ggtgaaagag acctgtacag ccggctgcgt
     6421 ctatcgcggc gaataaggtt tattaacgcg tgggctggat ggtaaattga ttccagccta
     6481 tccacacgac gttttatcag tgaaaacatt gcccagcgcg cggtgttaaa agcgcagcac
     6541 atcaccggtt gcaggtgcgg ttatttccgg tagccacaac cgcccccagg ccccggtaca
     6601 gtgacaaccg catagttttt caggtttttg ttcttgcaga aagcgcctga ctcgccacag
     6661 cgtgaacggt gatgcgcagc ggagatgaaa tccgccgata agcgcgtaaa tccgctttat
     6721 accggtaatg ttctgacagt gccggacaat atttgcgatc ccccgatgcc cgcatcccat
     6781 aatgatgact aatccttttg tcgattggta aatcagtacg ccctcatcca aaatagagtc
     6841 cggctccgca tcgtggccgc caaaaatgcc gtaggcttca ggcgcgacca ccggtatttc
     6901 ccctgaccag ataaagtttt cgccaatcgg cagggggcca cacgtgtaca tcattcggta
     6961 gcgtgaatag tccacctcac acgacaattt ttttattttc cgggtaatac cgagaaaagt
     7021 tattgccgca taacgttcgc gcgcaatatt gggatggcag atgattcgac tgttatcagg
     7081 aagccacggc acgccgccgc aatgatcgta atgaccatgc gaaagcacca cagcagacac
     7141 atcggacagg tcgatcccca tcgccgacgc gttttgcata aaactgccat cagggccggt
     7201 atcgaacaag atcgacgtag actcatcctc gaccaacagg cttaatcctg gccgggcctt
     7261 caacgattta tccgttccag ctcccttatg attttcgagc aataccctga tccttaacgc
     7321 catggccttc tcctgtataa aagcctcccc gggaaaacgc ggccttttta ctttacaggt
     7381 ttgtagcagc cattactggt acacagatta tgattatgca acggctatcc ttgttgacgt
     7441 ggggaatact gc
//
LOCUS       DAJVSD010000218         7340 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.218, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000218 DAJVSD010000000
VERSION     DAJVSD010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7340
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.218"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            97..1200
                     /locus_tag="OQP62_003640"
     CDS             97..1200
                     /locus_tag="OQP62_003640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HCS1723078.1"
                     /translation="MQTQDTFYQVMRRHGVTRRSFLKFCSLTATSLGLSSSMIPQIAY
                     ALENKPRTPVIWLHGLECTCCTESFIRSAHPLAKDAILSLISLDYDDTIMAAAGQQAE
                     QALADVMREYKGNYIVAVEGNAPLNEDGMFCILAGEPFLEKLKRVSADAKAIIAWGSC
                     ASWGCVQAARPNPTKATPVHKLITDKTIIKVPGCPPIPEVMSAVITYMLAFDRIPPLD
                     RLGRPKMFYGQRIHDKCYRRAHFDAGQFVEAWDDEGARKGYCLYKMGCKGPTTYNACS
                     TVRWNDGVSFPIQSGHGCLGCSEDGFWDYGSFYSRATGIPQTGIEATADKIGLGVAGV
                     AGAAAIAHATVSAIKHARNKNNTSSENATEKKK"
     gene            1203..3005
                     /locus_tag="OQP62_003641"
                     /pseudo
     CDS             1203..3005
                     /locus_tag="OQP62_003641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460498.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
     gene            2956..3699
                     /gene="cybH"
                     /locus_tag="OQP62_003642"
     CDS             2956..3699
                     /gene="cybH"
                     /locus_tag="OQP62_003642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HCS1723079.1"
                     /translation="MLLIIMEGSWSGFRYDDDDSEVSMHLKEITSQGYYIYEAPVRLW
                     HWITALSIVVLAVTGYFIGRPLPSIQGEATFMFWMGWIRLIHFTTAYIFTVALLFRIY
                     WACVGNEYAREMFLVPFWRRAWRKGVISEIRWYFFLEKEAHRYYGHNPVAGLAVMFYF
                     WMSVLMVCSGFALYGEGLGTDSWAYQWFGWMIRLTGNDSLALHFWHRLGMWFIIAFVI
                     AHVYTAIREDIMSRQSVISVMISGWRWFR"
     gene            3705..4313
                     /gene="hybD"
                     /locus_tag="OQP62_003643"
     CDS             3705..4313
                     /gene="hybD"
                     /locus_tag="OQP62_003643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HCS1723080.1"
                     /translation="MAEVTILGLGNLLWADEGFGVRAAEKLFEQYADNEKVDVVDGGT
                     QGLALLPWLQQTEKLLIMDAIDFGMAPGSLAMFRDEQVPAYLTAKKLSLHQTSFSEVL
                     ALLQLTGGQLSEIVLIGVQPECLDDYGGSLTPQVRAQLMPAVYLAQEVLAQWGITASS
                     AALPTERLNHYSLCMERYEDERPDAQSACRVGDIRVLQREKS"
     gene            4313..4612
                     /gene="hypC"
                     /locus_tag="OQP62_003644"
     CDS             4313..4612
                     /gene="hypC"
                     /locus_tag="OQP62_003644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HCS1723081.1"
                     /translation="MCIGVPVQVISPGQWFAKCRDRHGELIDVDIRLVAPPLAGAWLL
                     TFGGAARREMDEAEAVEVLVALDSLEQAMLTQSDPLTGFADLLSRTPELPEHLKK"
     gene            4609..5019
                     /locus_tag="OQP62_003645"
     CDS             4609..5019
                     /locus_tag="OQP62_003645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase"
                     /protein_id="HCS1723082.1"
                     /translation="MTISPQNPVCPLADKGFLVTDAQTLPSLINAHPTLLVLLQSDPN
                     KHPEVADSWVIIPEILKQFPATSYTAAFADSEQSELIAREYRILKYPALLFFRQHRFV
                     GSLAGLYSWQEYSQRVAALLTTPGYRQDIPVITQ"
     gene            5037..6098
                     /locus_tag="OQP62_003646"
     CDS             5037..6098
                     /locus_tag="OQP62_003646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubredoxin"
                     /protein_id="HCS1723083.1"
                     /translation="MNHSRTIPVVNIAGPGSQPEEEDFNFLPIPAGINLPLTPVLPEQ
                     ALPAELRVARHILTTLIRDMDNPVATLPFPLSYKLNATEQQNSGLLDQLLGEGEISAR
                     VLLSDGKEQRIQETVFTGVWRVREYNTDQQRVADEIIIGPIPESIWQTHPQPPITPEL
                     PPQLAGLMNGAFIAHEIAERVKQPVKEPHIINLTLLPVNDADREYLDHFLGEGCSAIF
                     SRGYGKCRIVSTHFPGVWRVNYFNDMNTLLQDMIEIADIPDIAVAGIDDIEDAYTGLK
                     NTLEWLKEYPVTENEPVVRMECKVCWWVYDPALGDDVWQIPPGVPFNQLPDYWCCPVC
                     ETSKSGFMVIDEGNNSCKD"
     gene            6086..6856
                     /locus_tag="OQP62_003647"
     CDS             6086..6856
                     /locus_tag="OQP62_003647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001189412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
                     /protein_id="HCS1723084.1"
                     /translation="MQRLTVYSHPLWITWQEAPIGRLLQGATPVYAKTLISRLFTLCA
                     QAHNAAAALLLFPEEKPDMQAAQQELARETLRRALTDWLPLFSHRQATAEEWALLRRG
                     ELSPLASTIFFDDDPQTWLAAGVKGWEAWFLQERSETARWLAAVQNIITPTLPMASSP
                     DHTLITHGPLDVSPLAIEYPLLSACCLSGKTTALRLLARCITLARSLSALPTLRWNRF
                     DDGEWKIAVVETARGWLVHQARLTTSGNITKFRQYVSP"
     gene            complement(6824..7240)
                     /locus_tag="OQP62_003648"
                     /pseudo
     CDS             complement(6824..7240)
                     /locus_tag="OQP62_003648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460490.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
BASE COUNT         1767 a         1847 c         1932 g         1794 t
ORIGIN      
        1 gaattagaaa cataattgct actaaaacac gttgagaaag acaagaaatg caacatatga
       61 tgcccacact aactatagtg gtttgggata aacgttatgc aaacacaaga tacattttat
      121 caagttatgc gtagacacgg cgtgacaagg cgtagcttcc tcaagttttg cagccttacc
      181 gcaacgtctt taggcctgag cagttcgatg attcctcaga tagcttatgc cctggagaat
      241 aaaccgcgta cgccagtgat atggctgcat ggtcttgaat gtacctgctg taccgaatct
      301 ttcattcgct ctgcgcaccc gttggcaaaa gatgccattt tgtcgctcat ttccctggat
      361 tatgacgaca ccattatggc cgccgcaggg caacaagccg agcaggcgtt ggcggatgtg
      421 atgcgtgagt acaaaggaaa ttatatcgtt gccgtggaag gtaacgcgcc gctgaatgaa
      481 gatggaatgt tttgcatact ggctggcgag ccgttcctgg aaaagttaaa acgcgtcagc
      541 gcggatgcta aagcgattat cgcctggggg tcctgcgcat catggggctg cgtgcaggca
      601 gcccgtccca acccaactaa agccacgccg gttcacaaat taattaccga taaaaccatt
      661 attaaagtgc caggctgtcc gcctatacct gaagtgatgt ccgccgttat cacctatatg
      721 ctggcatttg atcgcatccc tccccttgat cgtcttggac gacccaaaat gttttatggc
      781 cagcgaattc atgacaaatg ttaccgacgc gcgcatttcg atgccggtca gtttgtggaa
      841 gcgtgggatg acgaaggcgc cagaaaaggg tattgcctgt acaagatggg ctgtaaaggc
      901 ccgactacct ataacgcctg ttcaaccgtt cgctggaatg atggcgtgtc ttttcctatc
      961 cagtcgggtc atggatgcct cggatgttcg gaagatggat tctgggatta cggttctttt
     1021 tacagccggg caacgggcat tccgcaaacc ggcattgagg ctaccgccga taaaatcgga
     1081 ctgggcgttg ccggcgtcgc gggcgctgct gccatcgctc acgccacggt tagcgccata
     1141 aaacacgccc gcaataaaaa caacacgtca tcagaaaacg ctacggaaaa gaaaaaataa
     1201 ttatggcata tccttatcag actcagggtt ttacgctgga caatagcgga cggcgaattg
     1261 tggtcgatcc ggttactcgc atcgaagagc atatgcgctg cgaagtgaat attgacagta
     1321 ataatgtcat tactaacgcc gtgtcgaccg gcaccatgtg gcgcggcctg gaggttatcc
     1381 tgaaaggtcg cgatccgcga gacgcctggg catttgttga gcgcatttgc ggcgtctgca
     1441 ccggtacaca cgcgctgacc tcaatccgtg ccgtagaaaa tgcgctggga atcgcgattc
     1501 cggacaacgc aaactgtatc cgtaatatga tgcaggctac gctacacgtt cacgatcacc
     1561 tggtgcattt ttatcatctg catgcgctgg actgggtcga tgtagttgcc gccctgaaag
     1621 ccgacccgca tcagacctcc gccatcgcgc aaagcctttc cgcatggccg ctatcctcgc
     1681 cgggatattt ccgcgatttg caaaatcgac tgaagcggtt tatcgagtcc ggttaacttg
     1741 gccctttccg taacggctac tggggacatc cggcgatgaa acttccaccg gaagccaatt
     1801 tgctggcggt cgcccactat cttgaagcgc tcgattttca aaaagagatc gtaaaaattc
     1861 acaccgtttt cggtggtaaa aacccgcatc ctaactggct ggtgggcggc gttccttgcg
     1921 ccatcaacct tgacgaaacg ggcgcggtcg gcgcagtgaa tatggagcgc ctgaaccttg
     1981 tcagttccat catccaaaaa gctcgccagt tctgcgaaca agtttatctt ccggacgtct
     2041 tgctgattgc cagttattac aaagactggg caaaaatcgg cggcgggtta tcgagcatga
     2101 acctgctggc ttatggcgag tttccggata accctaacga ttattccgcc agtaatcttc
     2161 tgcttccgcg tggggctatc attaacggtc gtttcgacga aattcatcct gtcgatttaa
     2221 ccgcccccga tgagattcag gagtttgtca ctcactcctg gtatacctat ggtaacggca
     2281 ataacgataa gggcctgcat ccgtgggatg gtctgaccga accgcaactg gtcatgggcg
     2341 aacactataa aggcacaaaa acctttatcg aacaggtgga tgagtccgcc aaatattcat
     2401 ggattaaatc gccgcgctgg aagggacatg cgatggaggt aggtccgctg gcgcgttatt
     2461 tgattggata tcatcaaaat aaaccggaat ttaaagaacc agtggatcaa ctgcttagtg
     2521 tattaaagct gcctaaagaa gcgctctttt ctacattagg gcgtactgcc gcgcgtgcgc
     2581 tggaatccgt atgggcaggc aatacgctgc aatatttctt cgatcgtcta atgcgtaacc
     2641 tcaagtccgg cgatacggcg acggcaaacg ttacgctctg ggaacccgat acctggccca
     2701 catcggcaaa aggcgttggt ttcagcgagg cgccgcgcgg cgcgctgggg cactggataa
     2761 aaattgaaaa tcagaaaatc gacagctatc agtgtgtggt accgacaacc tggaatgccg
     2821 ggccacgtga cgataaaggt caaattggcg cgtacgaagc agcgttaatg gggactaaac
     2881 tcgccgttcc cgatcaacca ttgaagattt tacgtactct gcacagcttc gatccctgcc
     2941 tggcctgctc cacccatgtt attgataatc atggagggga gctggtcagg gttcaggtac
     3001 gatgacgacg attcggaggt ctcaatgcat ctcaaagaaa taaccagcca ggggtactat
     3061 atctatgaag cgccggtccg tttatggcac tggatcacgg cgttatccat tgtcgtcctg
     3121 gctgttacag gatatttcat tggccgcccc ctgccatcga ttcaaggtga agcgaccttt
     3181 atgttttgga tgggctggat acgactgatc cattttacca cggcgtatat ttttactgtc
     3241 gcgctgctgt ttcgtattta ctgggcatgt gtcggcaatg agtacgccag ggagatgttt
     3301 ctggttccat tctggcgccg cgcctggcgc aaaggcgtta tcagcgaaat ccgctggtat
     3361 tttttcctcg aaaaagaggc ccatcgttac tatggacata atccggtagc gggactggcg
     3421 gtaatgttct atttctggat gtccgtactg atggtgtgta gcggctttgc gctctatggc
     3481 gaaggacttg gaacagacag ttgggcgtat caatggtttg gctggatgat tcgcctgact
     3541 ggcaacgata gcctcgcgct gcatttctgg caccggctgg gcatgtggtt cattatcgcc
     3601 ttcgtcattg cgcatgttta taccgctatc cgcgaagaca ttatgagccg acaaagcgtg
     3661 atttccgtca tgataagcgg ctggcgctgg ttcaggtgat aacaatggca gaagtaacaa
     3721 tcttagggct tggcaacctg ctttgggcag atgaagggtt cggcgtcaga gctgcggaaa
     3781 agctgtttga acagtatgcc gataacgaga aagttgacgt tgttgatggc ggtacgcagg
     3841 ggctggcgct gctgccctgg ctgcaacaga cagaaaaact gttaatcatg gatgctatcg
     3901 attttggtat ggcgccaggt tcgctggcga tgtttcgtga tgaacaggtt cccgcctatc
     3961 tgacggcgaa aaaacttagt ttacatcaga ccagtttttc tgaagtgctg gcattgctgc
     4021 aattaaccgg cggccagtta tcggagattg tgctgattgg cgtgcagccg gaatgtctgg
     4081 atgactatgg cgggagtctt acgccgcagg taagggcgca actgatgcct gcggtctatc
     4141 tcgcgcagga agtgctggcg caatggggta tcaccgcctc ttcagcggcc ttgcccactg
     4201 aaagactcaa tcattacagc ctgtgtatgg aacgctacga agatgaacgg ccagatgcgc
     4261 aaagcgcttg ccgggtcggc gatattcggg tgctacagag agagaaatca taatgtgtat
     4321 tggcgttcct gtgcaggtta tttcacccgg tcagtggttc gccaaatgcc gcgaccgaca
     4381 cggcgagctt atcgacgttg atattcggct tgtggctccc cccttagcag gcgcatggct
     4441 gctgacattt ggcggcgcag cgcgacgaga aatggacgaa gcggaagccg ttgaggtact
     4501 ggtggcgctg gactcgctgg aacaggccat gctcacgcaa agcgatccgc tgaccggttt
     4561 tgccgattta ttgtctcgca cgcctgaatt accggagcat ttaaaaaaat gactatctca
     4621 ccccaaaatc ctgtttgtcc actggcggat aaaggctttc tggttaccga tgcgcaaacg
     4681 ctcccgtcgt tgattaatgc gcatccgact ctgctggttt tgctgcaaag tgaccccaac
     4741 aaacatccgg aagtcgccga cagttgggtc attatcccgg agatcctcaa gcaatttccg
     4801 gcgacatctt ataccgcggc atttgcggat agcgaacaga gtgaactgat cgcccgggag
     4861 tatcgcattc tgaaatatcc ggcgctgctt ttctttcgcc agcaccgttt tgtcggcagt
     4921 ctggcgggat tatatagctg gcaagaatac tctcagcggg tggccgcatt gctgactaca
     4981 ccgggctatc gtcaggatat tcccgttatt acgcaataga atgaaaggta acacacgtga
     5041 atcattccag aactattcca gtcgttaata ttgccggacc aggatcgcag ccagaagagg
     5101 aagactttaa ctttcttccc atccccgccg gcattaatct cccgctgacg ccggttttac
     5161 cggaacaggc gctgcccgct gagctccgtg ttgccagaca catcctgact acgcttattc
     5221 gcgatatgga taacccggtg gcaacgctcc cctttcccct gagctataag ctgaatgcca
     5281 ctgagcaaca gaatagcggt ttattggatc aactgctcgg cgaaggtgaa atctccgccc
     5341 gggtactatt atccgatgga aaagaacagc gtattcagga gacggttttt acgggcgtct
     5401 ggcgtgtacg tgaatataac actgaccagc aacgggttgc cgatgaaatt atcattggcc
     5461 cgatcccgga gagcatctgg cagacgcatc cgcagccgcc gattacacca gaattgccgc
     5521 cacaactggc gggattgatg aatggcgcct ttatcgcgca tgaaatagcc gagcgcgtaa
     5581 aacagccggt aaaagagccg catatcatta atttaacgct attgccagta aacgatgccg
     5641 atcgcgagta tctggatcat tttttaggcg aaggctgtag cgctattttt tcacgcggat
     5701 atggtaaatg ccggattgta agcacgcatt ttcccggcgt atggcgggtc aattatttca
     5761 atgatatgaa cacattactg caagatatga ttgagatagc ggacattcct gatatcgccg
     5821 ttgcaggcat cgacgatatc gaagatgcct acacggggct aaaaaatacg ttggaatggt
     5881 tgaaagaata cccggtcaca gaaaatgagc cagtggtgcg catggagtgc aaagtatgtt
     5941 ggtgggttta cgaccctgcg ctgggcgatg atgtatggca aattccaccc ggcgtgccct
     6001 tcaaccagtt acctgattac tggtgctgtc cggtttgcga aaccagtaag tccgggttta
     6061 tggtgatcga tgaaggtaat aattcgtgca aagattgacc gtctattctc acccgctatg
     6121 gattacctgg caggaggcgc cgatcggtcg tttgttacag ggcgcaacgc cggtatacgc
     6181 aaaaacgctt atttcacgtt tgtttacgtt gtgcgctcag gcgcacaacg cagcggcggc
     6241 tttactgttg tttcctgaag agaagccaga tatgcaggcc gcacaacaag agttggcgcg
     6301 agaaacgctc cgtcgcgcgt tgaccgactg gctccccctg tttagccacc gacaggcaac
     6361 cgctgaagaa tgggcgttgt tacgtcgcgg agagttatcc ccgctggcaa gcacaatctt
     6421 ttttgacgat gatcctcaga cctggcttgc cgctggcgta aagggctggg aagcctggtt
     6481 tttgcaagag cgttctgaaa ccgcccgctg gctggcggca gtacagaata tcattacacc
     6541 tacactaccg atggcgtcgt ccccggacca tacgttaata acccatggtc ccctggatgt
     6601 ctcgcctctg gctatcgaat atccgctgct gtcagcctgt tgtcttagcg gaaaaacgac
     6661 tgcgctacgt ctgctggccc gctgcattac gctcgcccga agtttgagcg cccttcctac
     6721 cctacgctgg aatcgttttg atgatggcga gtggaaaata gcagtagtgg aaaccgcgcg
     6781 aggatggtta gttcatcagg ccagactgac gacgtcaggt aatattacca aattcaggca
     6841 gtacgtcagt ccatgaacca atgtcgtata acacgccata gttacgacca taatcaacag
     6901 accccatatc ggcaaatgcc aaaccagcaa aaccgagacg cgtccagctt tgcggggaac
     6961 cgctggagtc accatcttcc ggacgattgg cgttgacctg atactcccac tgtccaaaac
     7021 cggttagttg atcggtaatt tgagtctcgc ctttaatacc catacggata taagattgat
     7081 cgccatccgt actatgatta ctggaaaaat aatgcaggcc gtcgaccttg ccatacaaat
     7141 ccagtttatt gccatccttg ttatagattt ctgctgcgtt ggcggctcca gccatcatca
     7201 cggctgcggc taccgcagat aacaccacta cttttttcat tttatatgcc ttatttgtct
     7261 tatttttgga ctttccgcaa aacctgctcg cggaactgtc cgggacaata tcactaacaa
     7321 ttaccgtgcg ttaagtttca
//
LOCUS       DAJVSD010000219         7317 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.219, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000219 DAJVSD010000000
VERSION     DAJVSD010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7317
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.219"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(274..1818)
                     /gene="ilvA"
                     /locus_tag="OQP62_003649"
     CDS             complement(274..1818)
                     /gene="ilvA"
                     /locus_tag="OQP62_003649"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HCS1723085.1"
                     /translation="MAESQPLSVAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRL
                     DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLG
                     VKSLIVMPKATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELAQQQGFTWVPPFDHP
                     MVIAGQGTLALELLQQDSHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA
                     CLKAALEAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKD
                     LFEDVRAVAEPSGALALAGMKKYIAQHNIRGERLAHVLSGANVNFHGLRYVSERCELG
                     EQREALLAVTIPEEKGSFLKFCQLLGGRMVTEFNYRFADAKHACIFVGVRVSQGLEER
                     KEIITQLCDGGYSVVDLSDDEMAKLHVRYMVGGRPSKPLQERLYSFEFPESPGALLKF
                     LHTLGTHWNISLFHYRSHGTDYGRVLAAFELGDHEPDFETRLHELGYECHDESNNPAF
                     RFFLAG"
     gene            complement(1821..3671)
                     /gene="ilvD"
                     /locus_tag="OQP62_003650"
     CDS             complement(1821..3671)
                     /gene="ilvD"
                     /locus_tag="OQP62_003650"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HCS1723086.1"
                     /translation="MPKYRSATTTHGRNMAGARALWRATGMTDSDFGKPIITVVNSFT
                     QFVPGHVHLRDLGKLVAEQIEASGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIAD
                     SVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQII
                     KLDLVDAMIQGADPKVSDDQSNQVERSACPTCGSCSGMFTANSMNCLIEALGLSQPGN
                     GSLLATHADRKQLFLNAGKRIVELTKRYYEQDDESALPRNIANKAAFENAMTLDIAMG
                     GSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVLG
                     ILGELDRAGLLNRNVKNVLGLTLPQTLEQYDITVTQDEAVKKMFRAGPAGIRTTQAFS
                     QDCRWDSLDDDRAAGCIRSLEYAYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTG
                     PVKVYESQDDAVEAILGGKVVEGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKAC
                     ALITDGRFSGGTSGLSIGHVSPEAASGGTIALIEDGDTIAIDIPNRSIQLQLSEAEIA
                     ARREAQEARGDKAWTPKNRQRQVSFALRAYASLATSADKGAVRDKSKLGG"
     gene            complement(3828..4757)
                     /gene="ilvE"
                     /locus_tag="OQP62_003651"
     CDS             complement(3828..4757)
                     /gene="ilvE"
                     /locus_tag="OQP62_003651"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HCS1723087.1"
                     /translation="MTTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYD
                     SHKGPVVFRHREHMQRLRDSAKIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLVF
                     VGDVGMGVNPPPGYTTDVIIAAFPWGAYLGAEALDQGIDAMVSSWNRAAPNTIPTAAK
                     AGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSAL
                     PGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGEG
                     RCGPVTKRIQQAFFGLFTGETEDKWGWLDPVNS"
     gene            complement(4775..5038)
                     /gene="ilvM"
                     /locus_tag="OQP62_003652"
     CDS             complement(4775..5038)
                     /gene="ilvM"
                     /locus_tag="OQP62_003652"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 small subunit"
                     /protein_id="HCS1723088.1"
                     /translation="MMQHQVNVSARFNPETLERVLRVVRHRGFQVCSMNMEAATDAQN
                     INIELTVASPRSVDLLFSQLSKLVDVAHVAICQSAATSQQIRA"
     gene            complement(5035..6681)
                     /locus_tag="OQP62_003653"
     CDS             complement(5035..6681)
                     /locus_tag="OQP62_003653"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001012636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 catalytic subunit"
                     /protein_id="HCS1723089.1"
                     /translation="MNGAQWVVHALRAQGVKTVFGYPGGAIMPVYDALYDGGVEHLLC
                     RHEQGAAMAAIGYARSTGKTGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSAP
                     FIGTDAFQEVDVLGLSLACTKHSFLVQSLAELPRIMAEAFEVANAGRPGPVLVDIPKD
                     IQLASGELEPWFTTVDNEATFPQADVEQARQMLEQAKKPMLYVGGGVGMAKAVPALRK
                     FIAVTQMPVTCTLKGLGAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDR
                     VTGKLNTFAPNASVIHMDIDPAEMNKLRQAHVALQGDLNSLLPALQQPLKIDAWRQSC
                     AELRAEHAWRYDHPGETIYAPLLLKQLSERKPADSVVTTDVGQHQMWSAQHMTYTRPE
                     NFITSSGLGTMGFGLPAAVGAQVARPNDTVICISGDGSFMMNVQELGTVKRKQLPLKI
                     VLLDNQRLGMVRQWQQLFFQERYSETTLTDNPDFLMLASAFGIPGQHITRKDQVEAAL
                     DTMLASEGPYLLHVSIDELENVWPLVPPGASNSEMLEKLS"
     gene            complement(6684..6734)
                     /locus_tag="OQP62_003654"
     CDS             complement(6684..6734)
                     /locus_tag="OQP62_003654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723090.1"
                     /translation="MNNSIKFCFSRFTTGM"
     gene            complement(6821..6919)
                     /gene="ilvL"
                     /locus_tag="OQP62_003655"
     CDS             complement(6821..6919)
                     /gene="ilvL"
                     /locus_tag="OQP62_003655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ilv operon leader peptide"
                     /protein_id="HCS1723091.1"
                     /translation="MTALLRVISLVVISVVVIIIPPCGAALGRGKA"
BASE COUNT         1636 a         2134 c         1850 g         1697 t
ORIGIN      
        1 atttcttttt cattggagag agctcgggtg agtaacataa catctttgtg tataaaattt
       61 tatacattgt ttttagcagg tgcaagtgat ggcggtgcta atgatatgga gccgagtttc
      121 accacaagca gattgggcgc cttctggaaa acgtctcgca aaatgaaatg agtggatgct
      181 ccgggctggc aggaaagccc aataactgag ggaagataat atctggatat taggcccact
      241 ttactttgtg ggcccgaaaa actaaacgct gaattaaccc gccagaaaga accggaacgc
      301 cgggttattg ctctcatcat ggcattcata gcccagttca tgcagccggg tttcgaaatc
      361 cggctcatga tcgcctaact cgaacgccgc cagcacgcgg ccataatcgg taccgtggct
      421 gcggtaatgg aatagcgaaa tattccagtg cgtgccaagc gtatgaagga atttgagcaa
      481 cgcgccgggc gactccggaa attcgaaact atacaaacgc tcctgtaatg gcttggaggg
      541 gcgcccgccg accatatagc gcacatgcag cttcgccatt tcatcgtcgg agagatccac
      601 tacgctataa ccgccgtcgc acagttgggt gataatctct tttcgttcct ccagcccctg
      661 actgacgcgt acgccgacaa aaatacaggc atgtttcgcg tcggcaaaac ggtagttaaa
      721 ttcggtgacc atacgcccgc caagcaactg gcagaatttg aggaagctcc ccttttcttc
      781 cggaatggtc accgccagta acgcttcgcg ctgttccccc agctcgcagc gttcagacac
      841 atagcgcaag ccgtggaagt tgacgttggc gccggaaagg acgtgcgcca ggcgttcgcc
      901 gcgaatattg tgctgggcga tatatttttt catccccgcc agcgccagcg cgccggacgg
      961 ctccgccacc gcacgcacat cttcaaacag gtctttcatc gccgcgcaga tcgcgtcgct
     1021 atcgactgta ataatgtcgt cgagatattc ctggcacagg cggaaggttt cgtcgccgat
     1081 gcgttttacc gccacgcctt cagcaaataa cccaacgcgc gggagatcca ctggatgacc
     1141 ggcttccaac gccgctttca ggcaggcgga atcctccgct tcgacggcaa tcactttgat
     1201 ttgcggcatc aattgtttga tcagtaccgc tacgcccgcc gccaggccgc cgccgccaac
     1261 cggcacaaag acacgatcga gatgcgaatc ctgctgaagc agttccagcg ccagcgtgcc
     1321 ctgcccggcg atcaccattg ggtgatcaaa cggcggcacc caggtaaaac cctgctgctg
     1381 cgccagctca atagctttcg ctttcgcttc atcaaaatta gcgccgtgca acagcacttc
     1441 gccgccaaaa ccgcgtaccg catcgacttt aatatccgcc gttgcttttg gcatgacgat
     1501 cagagacttc acgccaagcc gcgcggagga gaacgccacg ccctgtgcat ggttccccgc
     1561 cgacgcggta atcacgccgt gggctttttg ttcttcggtc aatccggcca tcatcgcgta
     1621 agcgccgcgc agcttaaagc tatgtaccgg ctgccggtct tcgcgtttga cgagaataac
     1681 gttgtccaga cgtgacgaga gcttttccat tttttgcagc ggcgtcacct gcgccgcttc
     1741 gtatactggc gcgcgtagca ccgcgcgcag atactccgcc ccttccggcg cgactgacag
     1801 aggttgagat tccgccatca tcaacctccc agtttcgatt tatcgcgcac cgcgccttta
     1861 tcggcgctgg tcgccaggct ggcgtaggca cgcagggcaa acgaaacctg acgctgacga
     1921 tttttcggcg tccaggcttt atcgccgcga gcttcctgcg cctcgcggcg tgcggcgatt
     1981 tcagcctcgc tcaactgcaa ctgaatgctg cggttcggga tatcaatcgc aatggtgtcg
     2041 ccatcttcaa tcagcgcaat agtgccgccg ctggccgctt ccggcgagac gtggccgatg
     2101 gaaagacccg aagtaccgcc ggagaaacgc ccatcggtga tgagcgcgca ggctttgccc
     2161 agccccatcg acttcaggaa actggtcgga tagagcattt cctgcattcc cggcccgcct
     2221 ttcggccctt cgtagcggat tacgaccaca tcgccttcca ctactttgcc gccgagaatc
     2281 gcctctaccg catcgtcctg gctttcgtaa actttgacag gaccggtaaa tttaaggatg
     2341 ctgtcatcca cgcccgcggt ttttacgatg cagccgtttt cggcgaagtt gccatacagc
     2401 accgccagac cgccgtcttt gctataggca tattccagcg agcggatgca acccgctgcg
     2461 cggtcgtcat ccagcgaatc ccagcgacaa tcctgagaga acgcctgggt agtacggata
     2521 ccggcagggc cagcacggaa cattttttta accgcttcgt cctgcgtaac cgtgatgtcg
     2581 tactgttcca gcgtttgcgg cagcgtcagg cctaatacgt ttttcacgtt gcggttcagc
     2641 agcccggcgc gatccagctc gcctaaaata cccagcacac cgccggcacg gtgaacatct
     2701 tccatatggt atttctgggt acttggcgcc actttacaca gctgcggcac cttgcgggac
     2761 agcttgtcga tatcactcat ggtgaagtcg atttccgctt cctgcgccgc cgccagtaga
     2821 tgcagaacgg tattggtcga accgcccatc gcaatatcca gcgtcatcgc attctcaaac
     2881 gccgccttgt tggcgatgtt acgcggcagt gcgctttcgt catcctgctc gtaatagcgt
     2941 ttagtcagtt caacaatccg cttaccagca ttgaggaaca actgcttccg gtcagcatgg
     3001 gtcgccagca gcgagccgtt gcccggctgc gacaggccca gcgcttcgat caggcaattc
     3061 atggagttag cggtaaacat gccggagcag gagccgcagg ttggacaggc ggagcgttca
     3121 acctggttac tttgatcgtc agagactttc gggtccgctc cctgaatcat ggcatcaacc
     3181 agatcgagct tgatgatctg atcggacagt ttggttttcc cggcttccat cgggccgccg
     3241 gagacaaaga tcaccggaat attcaggcgc agcgaggcca tgagcatccc tggggtgatt
     3301 ttgtcgcagt tggagataca caccatcgcg tcagcgcagt gagcgttcac catgtactcc
     3361 acggagtcgg cgatcagctc gcgcgacggc agtgaataga gcataccccc gtgccccatg
     3421 gcgatcccgt catccacggc aatagtgttg aactctttcg ccacaccgcc ggaagcttca
     3481 atctgttcgg cgaccagctt accgagatcg cgcagatgaa cgtgacccgg cacaaactga
     3541 gtgaatgagt tcaccacggt gataatcggt ttgccaaaat cactgtcggt cattccggtg
     3601 gcgcgccaca gcgcgcgggc acccgccata ttacgaccat gagtggtggt ggcggaacgg
     3661 tacttaggca tgctttattt actccccatc ttttcccttc atacttcacg ccacaggtgc
     3721 gttggctgcc tcactccagt cacttactac agtaagctcc tggggattcg ctgcgttgcc
     3781 gccttcctgt gacgcaaatt attttgggaa aatattaatt ttatttatta tgaatttacc
     3841 ggatccaacc agccccattt atcctcggtt tctccagtga agagaccaaa gaaggcttgt
     3901 tggatacgct tggtaacagg gccgcaacgg ccttcgccta cctggatacc atcaacgctg
     3961 cgtaccggag taatttctgc cgcagttccg gacataaaca cttcgtcggc cagatacagc
     4021 gattcacggg acagcacctg ctcacgcact tcaataccca gctctttcgc cagtttgatg
     4081 atcgcgtcgc gagtaatgcc tggcagcgcg gaagaggtaa acggcggagt aaacagcacg
     4141 ccatctttta cctcaaacag gttttcgcct gcgccttcgg atatatagcc gtttacatcc
     4201 agggcgatgc cttcctgata gccgtggcgg cgcgcttcgc tacccaccag cagtgaggaa
     4261 agatagttcc cgcccgcttt ggcggcggtc ggaatggtgt tcggcgcagc gcggttccag
     4321 gaagaaacca tcgcatcgat cccctgatcc agcgcttcgg cgcccaggta tgccccccac
     4381 gggaacgcgg cgatgatgac gtcagtggtg tatcccgggg gcgggttaac gcccataccg
     4441 acatcgccta caaataccaa cggacggata taggcgctgg tcagattatt tttacgaatt
     4501 acgtcgcggc aggcttccat cagctcatca atgctctggg aaaccggaaa acgataaatt
     4561 tttgctgagt cgcgcaggcg ctgcatatgt tcacgatgac gaaacactac cgggcctttg
     4621 tgagagtcgt agcaccgaat cccttcaaat accgacgtac cgtagtgcag cgcgtgagac
     4681 attacgtgaa ccttcgcgtc ttcccagcgc accatctcgc cattgaacca aatgtaatca
     4741 gcttttttcg tcgtcatttt tcttcctttt gcgctcaggc gcggatttgt tgtgatgtgg
     4801 cagcgctctg gcagattgcg acatgcgcaa catctaccag tttacttaac tgactaaaca
     4861 gtaagtcgac cgaccgggga ctggcaacgg tcaattcaat atttatattc tgcgcatcgg
     4921 tcgcggcttc catattcatg gagcacacct gaaaaccacg atggcgcacc acgcgtaaaa
     4981 cacgttctaa ggtttctgga ttaaagcgtg ccgatacatt gacctgatgt tgcatcatga
     5041 taatttctcc agcatttcag agttactggc gccaggcggc accaacggcc agacattttc
     5101 aagttcgtcg attgagacgt gaagcaggta cggcccttcg cttgccaaca tcgtgtcgag
     5161 tgccgcttca acctggtctt tacgagtaat gtgctggcct ggaatgccga aggcgctggc
     5221 cagcatgagg aaatcggggt tatcggtcag ggtggtttcg ctatatcgct cctggaaaaa
     5281 cagttgctgc cattgtcgaa ccatccctaa ccgctggttg tcgagtaaga ctatcttcaa
     5341 cggtaactgc ttgcgtttta cggtgcccaa ctcctgaaca ttcatcatga aggagccgtc
     5401 accggagata cagataacgg tatcattcgg tcgcgctacc tgcgcgccaa cggccgccgg
     5461 taagccgaat cccatcgtcc ccagaccgct ggaagtgatg aagttctccg ggcgggtgta
     5521 agtcatatgc tgggctgacc acatctgatg ctgccccaca tccgtcgtca ccacactgtc
     5581 tgcgggtttg cgttccgaca attgcttcaa caacaacggc gcatagatag tctcgccagg
     5641 atggtcatag cgccaggcgt gttctgcgcg cagctctgca caagactgac gccatgcgtc
     5701 gatcttcagc ggttgctgta atgccggcaa cagcgaattt aaatcgccct gcaacgcgac
     5761 gtgtgcctga cgcagtttgt tcatttccgc cgggtcgata tccatatgga ttacgctggc
     5821 gttaggcgca aacgtattca gcttaccggt cacccggtca tcaaaacgtg cacccactgc
     5881 gatcagtaaa tcacactctt gcaccgcgaa attagccgct ttagtaccgt gcattcccag
     5941 catgcccaga tagtacggat aatcagcttc aacagccccc agacctttca gcgtgcaggt
     6001 aactggcatt tgcgttaccg cgataaattt acgcagcgcc ggaaccgcct tcgccatacc
     6061 aacaccaccg ccgacgtaca gcatgggttt tttcgcctgt tccagcatct ggcgcgcctg
     6121 ttccacatca gcctgcggga aagtcgcttc gttatcgacg gtagtaaacc agggttctag
     6181 ctcaccgctg gccaactgga tatctttcgg gatatccacc agaactggtc cgggacggcc
     6241 agcgttggcg acttcaaaag cctccgccat gatgcgcggc aactctgcca gcgactgcac
     6301 caggaagctg tgtttggtac aggccagcga cagccctaac acatccacct cctggaacgc
     6361 atcggtgccg atgaacgggg cggaaacctg acccgtgatc gcgacaacgg ggaccgaatc
     6421 taacaacgca tccgccaggc cagtgatcag gttagtggcg ccagggcccg aggtggcgat
     6481 acaaacaccg gttttgccgg tagaacgggc ataaccgatt gccgccattg cggcaccctg
     6541 ctcgtgtcgg cacaacaaat gctccacacc accgtcatac aacgcgtcgt aaaccggcat
     6601 aattgcgccg ccaggataac caaatacggt tttcaccccc tgcgctcgca aagcatgtac
     6661 cacccactgt gccccgttca tagttacatc cccgtcgtaa atcttgagaa acagaatttt
     6721 atgctgttat tcacgctctg ctcctcgctt aagtttttca ggccaaaaaa aacccccgga
     6781 cctttcggtg cgggggtctt agttcgttaa ggcttgattt ctaagccttt cctcgtccaa
     6841 gtgcagcccc gcacggtggg ataataatca ccaccacgct aatcacgacc aggctaatca
     6901 ctcgtagaag ggctgtcatt tttgtctatt cttgcatctt gttcgaagga atacctaaag
     6961 agttaccata ggttttgcca atagcacaag atattttttt aaccacgttt cagataatgc
     7021 aggtgaatgc ctaaaagggc tttgtttttt ataagaaaaa ttagcaactg aaaaattttc
     7081 acgttttcct cccccttttg gtgcgcttta caccctgttt tccttctttt cgcttctgcg
     7141 agcgttcttc cagtttgatg tttcttacct gaaaatgacg ccaaaattca ggaatcagcc
     7201 gctaaaaaac aaaaagtcag taattcgatt ttctcttcta ttccgcataa tccacgtaac
     7261 aggagggatt atgtcactgg cgattgttca tactcgcgcc gcacttggcg tcaatgc
//
LOCUS       DAJVSD010000220         7293 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.220, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000220 DAJVSD010000000
VERSION     DAJVSD010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7293)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7293)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7293
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.220"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..826
                     /gene="tdcB"
                     /locus_tag="OQP62_003656"
     CDS             <1..826
                     /gene="tdcB"
                     /locus_tag="OQP62_003656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional threonine ammonia-lyase/L-serine
                     ammonia-lyase TdcB"
                     /protein_id="HCS1723092.1"
                     /translation="SFKIRGAFNKLSSLTEAEKRKGVVACSTGNHAQGVSLSCAMLGI
                     DGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVETEGRIFIPPYDDPK
                     VIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHG
                     MAASYYAGEITAHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIAL
                     IQRNKVITEGAGALACAALLSGKLDSHIQNRKTVSIISGGNIDLSRVSQITGLVDA"
     gene            847..2177
                     /gene="tdcC"
                     /locus_tag="OQP62_003657"
                     /pseudo
     CDS             847..2177
                     /gene="tdcC"
                     /locus_tag="OQP62_003657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462157.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine transporter TdcC"
     gene            2244..3452
                     /gene="tdcD"
                     /locus_tag="OQP62_003658"
     CDS             2244..3452
                     /gene="tdcD"
                     /locus_tag="OQP62_003658"
                     /EC_number="2.7.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionate kinase"
                     /protein_id="HCS1723093.1"
                     /translation="MNEFPVVLVINCGSSSIKFSVLDVATCDVLMAGIADGMNTENAF
                     LSINGDKPINLSHSNYEDALKAIAFELEKRDLTDSVALIGHRIAHDGELFTQSVIITD
                     EIIDNIRRVSPLAPLHNYANLSGIDAARRLFPAVRQVAVFDTSFHQTLAPEAYLYGLP
                     WEYFSSLGVRRYGFHGTSHRYVSRRAYELLDLDEKNSGLIVAHLGNGASICAVRNGQS
                     VDTSMGMTPLEGLMMGTRSGDVDFGAMAWIAKETGQTLSDLERVVNKESGLLGISGLS
                     SDLRVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLHRLDGIIFTGGIGENSVLI
                     RQLVIEHLGVLGLTLDVEMNKQPNSHGERIISVNPSQVICAVIPTNEEKMIALDAIHL
                     GNVKAPVEFA"
     gene            3486..5780
                     /gene="pflB"
                     /locus_tag="OQP62_003659"
     CDS             3486..5780
                     /gene="pflB"
                     /locus_tag="OQP62_003659"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HCS1723094.1"
                     /translation="MKVNIDTSDMLYAEAWRDFKGTDWKEEINVCDFIQHNYTPYEGD
                     ESFLADATPATTALWEKVMAGIRIENATHAPVDFDTNIATTITAHDAGYIEKELEKIV
                     GLQTDKPLKRALHPFGGVNMIKSSFHAYGREMDADFEYTFTDLRKTHNQGVFDVYSPD
                     MLRCRKSSVLTGLPDGYGRGRIIGDYRRVALYGIRYLVRERELQFADLQSNLERGQNL
                     EATIRLREELAEHRRALLQMQEMAAKYGYDISRPARNAQEAVQWLYFAYLAAVKSQNG
                     GAMSLGRTASFLDIYIERDFNAGLLTEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSG
                     DPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEALPVAFKKYA
                     AQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYA
                     INGGVDEKLKIQVGPKTAPLTDEVLDYDAVMESLDHFMDWLAVQYISALNIIHYMHDK
                     YSYEASLMALHDRDVYRTMACGIAGLSVAADSLSAIRYAQVKPIRDENGLAIDFAIEG
                     EYPQYGNNDERVDSIACDLVKRFMQKISVLPTYRNAVPTQSILTITSNVVYGQKTGNT
                     PDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKE
                     DAVRKTNLVGLLDGYFHHEAQVEGGQHLNVNVMNREMLLDAIEHPENYPNLTIRVSGY
                     AVRFNALTREQQQDVISRTFTQAM"
     gene            5850..7214
                     /gene="tdcG"
                     /locus_tag="OQP62_003660"
     CDS             5850..7214
                     /gene="tdcG"
                     /locus_tag="OQP62_003660"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HCS1723095.1"
                     /translation="MISAFDIFKIGIGPSSSHTVGPMNAGKCFIDRLIDSGDLPRTTR
                     ITVDLYGSLSLTGKGHATDTAIIMGLAGNTPQDVNIDSIPAFIQEVARSSRLSVAGGA
                     HVVDFPVADSILFHAETLARHENGMRITAWHGQTPLLHKTYYSIGGGFIVEEERFGQS
                     HDVEKSVPYDFHSASELLTLCERQGLSVSGLMMQNELALRSKEQIDAGFARIWQVMAT
                     GIERGMNTEGVLPGPLNVPRRAVALRRLLVSSDNLSRDPMNVIDWINMFALAVSEENA
                     AGGRVVTALTNGACGIIPAVLAYYDKFRRPVNANSIARYLLSAGAIGMLYKMNASISG
                     AEVGCQGEVGVACSMAAAGLTELLGGSPAQVCIAAEIAMEHNLGLTCDPVAGQVQIPC
                     IERNAINAVKAVNAARMALRRTSEPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIK
                     VVCG"
BASE COUNT         1637 a         1777 c         2080 g         1799 t
ORIGIN      
        1 ttcatttaaa attcgtggcg cttttaacaa acttagctcg ttaacggagg cggaaaaacg
       61 taaaggcgtc gtggcctgtt ccacaggtaa tcatgcacag ggcgtttctc tttcttgcgc
      121 aatgctgggt attgacggca aagtcgtgat gccgaagggc gcgccaaagt caaaagtggc
      181 ggccacctgt gattattcgg cggaagtggt gctccacggt gacaacttca atgacaccat
      241 tgctaaggtg agtgaaattg tcgaaaccga aggccgcatt tttattccgc cttacgacga
      301 tccaaaagtc attgccgggc agggtactat tggtctggaa attatggaag atctgtacga
      361 tgtcgataat gtcatcgtgc ctattggcgg cggcggttta attgcaggta ttgccattgc
      421 gattaaatcg attaacccga ccattaaagt tatcggcgta caggccgaaa atgttcacgg
      481 tatggcggcg tcttattacg ctggcgaaat aaccgcgcac cgaacgaccg gcaccctggc
      541 ggatggttgt gatgtctccc gcccgggtaa tttaacctat gaaattgttc gtgaattagt
      601 cgatgacatt gttctggtta gcgaagatga aattcgtaac agcatgatcg ctttaattca
      661 gcgcaataag gttattactg aaggcgctgg cgcactggcc tgcgccgcac tattaagcgg
      721 gaaattagat agccatattc agaacagaaa aacggtcagt attatttctg gcggcaatat
      781 cgatctttct cgtgtatcac aaattacggg tttagttgac gcttaatctt ttcgtgagga
      841 taggatatga gtactactga tagcattgta tccagccagg caaaacagtc gtcatggcgt
      901 aaatcggaca cgacgtggac gctgggttta tttggtaccg ccatcggcgc cggggtgctg
      961 ttcttcccta tccgcgccgg gtttggcggg cttatcccca ttctgctgat gctggtttta
     1021 gcttatccca ttgcgttcta ttgtcaccgg gcgctggcgc gtctgtgttt atccgggtct
     1081 aatccgtccg gcaatattac ggaaacggtc gaagagcact ttggtaaaac gggcggggta
     1141 gttatcacgt tcctttactt ctttgcgatt tgtccgctgc tgtggattta tggcgtcacc
     1201 attactaaca cgttcatgac gttttgggaa aaccagttgc agataccagc gttgaatcgc
     1261 ggtttcgtgg cgctgttctt gctgctgctg atggcctttg tgatctggtt tggtaaagat
     1321 ctgatggtta aggtgatgag ttacctggta tggccgttta tcgccagtct ggtgctaatc
     1381 tcattatcgc tgattcctta ctggaactcg gcggttatcg atcaggttga tctcagtaat
     1441 atcgcgctga ccgggcacga tggcatactg gttacggtgt ggctgggcat ctctattatg
     1501 gtgttctcct ttaacttttc gcccatcgtc tcttccttcg tggtgtctaa gcgtgaagag
     1561 tatgagaaag agtttggccg cgaatttacc gagcgtaaat gttcacagat catctcgcgc
     1621 gccatatgct gatggtcgcc gtggtgatgt tcttcgcctt tagctgtctg tttacgctct
     1681 ccccgcagaa catggcggat gcgaaagcgc agaacattcc ggtactttcc tacctggcca
     1741 accatttcgc ctctttgtcg gggacaaaat ccacttttgc aacggtgctg gagtatggcg
     1801 cgtctatcat cgcgctggtt gctattttca aatctttctt cggccactac ctggggacgc
     1861 tggaagggct gaacggcctg gtgctgaaat tcggttataa aggcgataaa accaaagtct
     1921 ctatgggcaa gcttaatacc atcagcatga tcttcattat gggatctacc tgggtcgtag
     1981 cttacgcaaa cccgaacatt ctggacctga ttgaagcgat gggcgcgccg attatcgcct
     2041 cactgttatg cctgctgccg atgtacgcca ttcgtaaagc gccgtcgctg gcgaagtacc
     2101 gtggtcgtct ggataacgtg ttcgtcaccc tgattggtct gctgaccatc ctgaatattg
     2161 tctacaaatt gttctaatcc tcacgtttag cctgcgttcc gccccagggc gtggacgcag
     2221 gctgacatcg acggaggcac tacatgaatg aatttccggt cgttctggtc attaattgcg
     2281 gatcatcttc tatcaaattc tctgtactgg atgtcgctac ctgtgatgtt ttaatggcgg
     2341 gaatagcaga tggaatgaat actgaaaacg cctttttatc tattaatggc gataagccga
     2401 taaacctctc gcactctaat tatgaggacg cgttaaaagc cattgccttt gagctggaaa
     2461 aacgtgattt aacggatagc gtggcattaa ttggtcaccg tatcgcgcac gatggagagc
     2521 tatttacgca gtccgtcatt attaccgatg agattatcga taatattcgt cgggtatcac
     2581 ctttagcgcc gctgcataat tacgctaatt taagcggcat tgacgcggcg cggcgccttt
     2641 tcccggccgt gcgtcaggtg gcggtatttg ataccagttt ccaccagacg ctggcgccgg
     2701 aagcctattt atacggattg ccgtgggaat atttttccag cctgggtgtg cgtcgctacg
     2761 gctttcacgg tacgtcgcat cgctatgttt cgcggcgcgc gtatgaactg cttgacctcg
     2821 atgaaaaaaa ctcgggtctg attgtcgcgc atctgggcaa tggggcgtct atctgcgcgg
     2881 tacgcaatgg tcagagcgtg gacacctcaa tggggatgac gccgcttgag gggctgatga
     2941 tgggcactcg cagcggcgac gttgatttcg gcgcgatggc gtggatagcc aaagaaaccg
     3001 ggcagacgtt gagcgatctg gagcgagtgg tgaataaaga gtccggtttg ctcggcatct
     3061 ccgggttgtc atccgacctt agagtcctgg aaaaagcctg gcacgaagga catgagcgcg
     3121 cccggttagc gataaaaacg tttgtccacc gtatcgcccg tcacattgcc ggacacgcgg
     3181 catcgttaca tcggctggat ggcattattt ttaccggcgg tattggtgaa aattcagtat
     3241 taattcgcca gttggtcatt gaacatttgg gcgtactggg gcttacgtta gacgttgaaa
     3301 tgaataagca gccgaattct cacggcgagc gcattatttc cgttaaccct tctcaggtta
     3361 tttgcgctgt tattcccacg aatgaagaga aaatgattgc ccttgatgcc attcatttag
     3421 gcaacgtgaa agcaccagtg gaatttgcat aacttaacgg ctgttctgta gagagattat
     3481 ttttcatgaa ggtaaatatc gataccagcg atatgctgta tgccgaagca tggcgtgatt
     3541 ttaaaggtac ggactggaaa gaagaaatta atgtctgtga ttttattcag cataactata
     3601 cgccctatga gggggatgaa tcttttctcg ccgacgcgac gccagcgacc acagcgttgt
     3661 gggaaaaggt gatggcggga atacgtatcg agaacgcgac ccatgcgccg gtggatttcg
     3721 ataccaacat cgcgacgacg attaccgcgc acgatgcggg gtatattgaa aaagagctgg
     3781 aaaaaatcgt cggtttacaa acggataagc cgcttaaacg cgctttgcat ccgtttggcg
     3841 gcgttaacat gatcaaaagt tcattccacg cttatggccg ggaaatggac gccgattttg
     3901 aatatacctt taccgacctg cggaaaaccc ataatcaggg cgtattcgat gtttactcgc
     3961 cggatatgct gcgctgccgt aaatccagcg tattaaccgg tttgccggat ggttatggtc
     4021 gcgggcgcat tattggcgat tatcgccgcg tcgcgctgta tggcatccgt tatctggtgc
     4081 gcgaacgcga gctgcaattc gccgacctgc agtcgaatct ggagcgggga cagaatcttg
     4141 aggcgacgat tcgcctgcgt gaggagttgg cggagcaccg tcgcgcgctg ctgcaaatgc
     4201 aggagatggc ggcgaaatac ggctatgata tctcccgccc ggcgcggaac gcgcaggaag
     4261 cggtacagtg gctctacttc gcttatctgg cggcggtaaa atcgcaaaat ggcggtgcaa
     4321 tgtcgctggg aagaaccgcc tcgttccttg atatctacat tgagcgcgat ttcaacgcgg
     4381 gtcttctgac agagcagcag gcgcaggagc tgatcgacca tttcatcatg aagatccgca
     4441 tggtgcgctt cctgcgcacg ccggaatttg attcgctctt ttccggcgat ccgatctggg
     4501 ccaccgaagt tattggcggg atggggcttg atggccgcac gctggtgacg aagaactctt
     4561 tccgttatct gcataccctg cacacgatgg ggccagcgcc ggagccgaac ctgaccatac
     4621 tgtggtcaga agcgttgccg gtggcattca agaaatatgc tgcgcaggtc tccatcgtga
     4681 cctcatcttt gcagtatgaa aacgacgatt taatgcgtac cgactttaac agcgacgatt
     4741 acgccatcgc ttgttgcgtc agcccgatgg tcatcggtaa gcagatgcag ttcttcggcg
     4801 cgcgcgccaa ccttgccaaa acgttgctgt acgctatcaa tggcggcgtt gacgagaaac
     4861 tgaaaatcca ggttgggccg aaaaccgcgc cgttaacgga tgaggtgctg gattatgacg
     4921 cagtaatgga gagcctcgac cattttatgg actggctggc ggtgcagtac attagcgcgc
     4981 tgaacatcat tcactatatg cacgataagt acagctatga agcttcgctg atggcgctgc
     5041 acgaccgtga tgtgtatcgg acgatggcgt gcggcatcgc cggactgtcg gtggcggcgg
     5101 attccctatc cgccatcagg tacgctcagg tgaagccgat tcgcgacgaa aatggccttg
     5161 ccatcgactt tgctattgaa ggcgagtatc cgcagtacgg caacaacgat gagcgcgtgg
     5221 acagcatcgc ctgcgacctg gtgaaacgct ttatgcaaaa aattagcgtg ttgccgacgt
     5281 atcgcaatgc ggtgccgacg cagtccattt tgaccatcac ctcgaacgtc gtgtacgggc
     5341 agaagaccgg caatacgccg gatggacgcc gcgccggaac gccgttcgcg ccgggggcga
     5401 acccgatgca cggtcgtgac cgcaaagggg cggtggcctc gctgacgtcg gtggcgaaac
     5461 tgccgtttac ctacgccaaa gacggtattt cgtacacctt ctcgattgtg cctgcggcgc
     5521 tcgggaaaga agatgcggtg cggaaaacca atcttgtcgg cctgctggac ggctatttcc
     5581 atcatgaagc acaggtagaa ggcgggcagc atctgaacgt caatgtcatg aaccgtgaaa
     5641 tgttgctgga tgcgattgaa catccggaaa actacccgaa cctgacgatc cgcgtttccg
     5701 gctatgccgt gcgcttcaat gcgctgactc gtgagcagca acaggacgtt atttcgcgca
     5761 cctttactca ggcgatgtaa cgtgaacggg gcgatcgtgt ggatcgcccc gcgacggatc
     5821 ttcactgaac ggtaatctta gggggagata tgattagcgc atttgatatt tttaagattg
     5881 gcattggacc ttcaagctcc cataccgtag ggccaatgaa tgcaggaaaa tgttttatcg
     5941 atcggctgat cgacagcggc gacctgccgc gaacgacgcg catcacggtt gatctttacg
     6001 gatcgctatc gctgacgggc aaaggccacg cgaccgatac cgccatcatt atgggtcttg
     6061 cgggcaatac gccgcaggat gtcaatattg atagcattcc ggcgtttatc caggaggttg
     6121 cccgcagcag ccgtttatcg gtggcgggtg gcgcgcatgt ggtggatttt cccgtcgccg
     6181 acagtattct ctttcacgct gaaaccctgg cgcgccatga aaacggtatg cgaattaccg
     6241 cctggcacgg gcaaacgccg cttttacaca aaacgtatta ctctattggc ggcggcttta
     6301 ttgtcgaaga ggaacgtttt ggtcagtcgc acgacgtaga aaaatcggtg ccgtatgatt
     6361 ttcattccgc cagcgaactg ctgacgctgt gtgaaaggca ggggctctcg gtttccggcc
     6421 tgatgatgca aaatgaactg gcgttgcgga gcaaagagca gattgacgct ggctttgccc
     6481 gcatttggca ggtgatggcg accggaattg aacgtggcat gaatactgag ggcgtgctgc
     6541 cggggccgct gaacgtccca cgccgcgcgg tagcgttacg gcgtctgctg gtctccagcg
     6601 ataatctctc ccgcgatccg atgaacgtca tcgactggat taacatgttc gccctggccg
     6661 tgagcgaaga gaacgcggcg ggcgggcgag tggtcaccgc gctgaccaac ggcgcgtgcg
     6721 gcattattcc cgcggtgctg gcctattacg acaaattccg tcgtccggtc aatgccaact
     6781 ctatcgcccg ttatctgctg tcggcggggg caattggcat gctgtacaag atgaacgcct
     6841 cgatatccgg cgcggaagtg gggtgtcagg gcgaggttgg cgtcgcgtgt tcgatggcgg
     6901 cggcggggct gacagaactg ctgggcggca gcccggcgca ggtctgtatt gcggcggaaa
     6961 ttgcgatgga gcataacctt ggcctcacct gtgacccggt ggcgggtcag gtgcaaatcc
     7021 cttgtattga acgtaatgcg attaacgccg ttaaagcggt aaatgcggcg cgaatggcgc
     7081 tacgccgtac ctctgagccg cgggtttcgc tcgataaagt gatcgaaacc atgtacgaaa
     7141 cgggtaaaga catgaacgac aaatatcgcg agacgtcgcg cggcggtctg gcgattaaag
     7201 tcgtttgtgg ataggcccga caggcgcaga gtgagcaggc tatgggataa cgcagaagac
     7261 agaagctgag aaaagggcgc accaaagtgc gcc
//
LOCUS       DAJVSD010000221         7281 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.221, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000221 DAJVSD010000000
VERSION     DAJVSD010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7281)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7281)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7281
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.221"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            345..4805
                     /gene="gltB"
                     /locus_tag="OQP62_003661"
     CDS             345..4805
                     /gene="gltB"
                     /locus_tag="OQP62_003661"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HCS1723096.1"
                     /translation="MLYDKSLEKDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGA
                     ILADGKTGDGCGLLLQKPDRFFRIVAEERGWRLAKNYAVGMIFLNKDPELAAASRHIV
                     EEELQQETLSIVGWRDVPTNEGVLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFIA
                     RRRIEKRLQDDKDFYVCSLSNLVNIYKGLCMPADLPRFYLDLADLRLESAICLFHQRF
                     STNTVPRWPLAQPFRYLAHNGEINTITGNRQWARARTYKFQTPLIPDLQSAAPFVNET
                     GSDSSSLDNMLELLLAGGMDIIRAMRLLVPPAWQNNPDMDQDLRAFFDFNSMHMEPWD
                     GPAGIVMSDGRFAACNLDRNGLRPARYVITKDKLITCASEVGIWDYQPDEVVEKGRVG
                     PGELMVIDTRGGRILHSAETDDDLKSRHPYKAWMEKNVRRLVPFEELPDEEVGSRELD
                     DDLLASYQKQFNYSAEELDSVIRVLGENGQEAVGSMGDDTPFAVLSSQPRIIYDYFRQ
                     QFAQVTNPPIDPLREAHVMSLATSIGREMNVFCEAEGQAHRLSFKSPILLYSDFKQLT
                     TMSEHHYRADWLDITFDVTETTLDATVKALCDKAEQMVRNGTVLLVLSDRNIGKNRLP
                     VPAPMAVGAVQTRLVDQSLRCDANIIVETGSARDPHHFAVLLGFGATAIYPYLAYETL
                     GRLIDTQAIAKNYRTVMQNYRNGINKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDV
                     VNLCFQGVVSRIGGASFDDFQQDLLNLSKRAWLARKPISPGGLLKYVHGGEYHAYNPD
                     VVRTLQQAVQSGEYSDYQEYAKLVNERPAATLRDLLAIHPDGEAVTIDEVEPASELFK
                     RFDTAAMSIGALSPEAHEALAEAMNSLGGNSNSGEGGEDPARYGTNKVSRIKQVASGR
                     FGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHH
                     DIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGT
                     GASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDIIKAAILGAE
                     SFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPFKVTNYFEFIARE
                     VRELMASLGVTRLVDLIGRTDLLKELEGFTAKQQKLALSRLLETAEPHPGKALYCTEN
                     NPPFDNGVLNAQLLQQAKPFVDARQSKTFWFDIRNTDRSVGASLSGYIAQTHGDQGLA
                     SDPIKAHFSGTAGQSFGVWNAGGVELYLTGDANDYVGKGMAGGLIAIRPPVGSAFLSH
                     KASIIGNTCLYGATGGRLYAAGRAGERFGVRNSGAITVVEGIGDNGCEYMTGGIVCVL
                     GKTGVNFGAGMTGGFAYVLDEDGEFRKRVNPELVEVLDVDSLAIHEEHLRGLITEHVQ
                     HTGSQRGEEILSRWSSFSTQFALVKPKSSDVKALLGHRSRSAAELRVQAQ"
     gene            4815..6233
                     /gene="gltD"
                     /locus_tag="OQP62_003662"
     CDS             4815..6233
                     /gene="gltD"
                     /locus_tag="OQP62_003662"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001540975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit GltD"
                     /protein_id="HCS1723097.1"
                     /translation="MSQNVYQFIDLQRVDPPKKPLKLRKIEFVEIYEPFSEGQAKAQA
                     DRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDR
                     LCEGSCTLHDEFGAVTIGNIERYINDKAFEMGWRPDMTGVRQTDKRVAIIGAGPAGLA
                     CADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTE
                     VGRDVQLEDLLKDYDAVFLGVGTYQSMRGGLENEDADGVFDALPFLIANTKQIMGFGE
                     TSDEPYVSMEGKRVVVLGGGDTAMDCVRTSIRQGATHVTCAYRRDEENMPGSRREVKN
                     AREEGVEFQFNVQPLGIEVNANGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHVVPA
                     DAVVMAFGFRPHSMEWLAKHSVELDSQGRIIAPERSDNAFQTSNPKIFAGGDIVRGSD
                     LVVTAIAEGRKAADGIMNYLEV"
     gene            6441..>7281
                     /locus_tag="OQP62_003663"
     CDS             6441..>7281
                     /locus_tag="OQP62_003663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HCS1723098.1"
                     /translation="MTNPTLAPQSDEYQQIHDGIIRLVDTARTETVRSINAIMTATYW
                     EIGRRIVEFEQGGEARAAYGTQLIERLSVDLSQRYKRGFSNRNLWQIRTFYLCFQHIE
                     IPQTLSAESSNLIPLAKTFPLPWSAYVRLLSVKDNDARTFYEKETLRNGWSVRQLDRQ
                     IATQFYERTLLSHDKSAMLQQPAPAEPNVLPEQAIRDPFILEYLNLKDEYSESDLEDA
                     LLSHLMDFMLELGDDFAFVGRQRRLRIDDSWFRVDLLFFHRRLRCLLLVDLKVGKFGY
                     ADAG"
BASE COUNT         1623 a         2017 c         2083 g         1558 t
ORIGIN      
        1 ccgtattagc aaccactcta taaaaaacct tttaatttca atagattaaa aaagttatct
       61 gtgctacagc acacttttgc ataaatcagt ttgccatttg acctgggtgt ggattcccga
      121 taagttgggg atccgctgga agctttctgg atgagccgtc tgctcatcat atttatgcag
      181 taattgagat tccctcttaa ccgtatttac caatgcgcaa aggacacaaa gagggcgaat
      241 gcgaggtaag cgtatgatgc gccagccccg tcgccatgct cttgctgtgc ccgcgcgccg
      301 tcggttggga gagcgtcccg tagagcctgg ggaggttcac tgatatgttg tacgataaat
      361 cccttgagaa ggataactgt ggtttcggcc tgatcgccca catagaaggc gaacctagcc
      421 acaaggtagt gcgtaccgcc atacacgcgc tggcccggat gcagcaccgt ggcgcgatcc
      481 ttgccgacgg taaaaccggc gacggttgcg gcttgctgtt acaaaaacct gaccgtttct
      541 ttcgcatcgt ggccgaagag cgcggctggc gcttagccaa aaactacgcc gtcgggatga
      601 tctttttgaa taaagatcct gaactggccg ccgcgtcacg ccatattgtc gaagaagaat
      661 tacagcagga aaccctgtcg attgtcggct ggcgcgatgt gccaaccaat gaaggcgtgc
      721 tcggtgaaat cgccctctcc tccctgccgc gtattgagca gatttttgtc aacgctccgg
      781 cgggctggcg tccgcgcgat atggagcgcc gtctgtttat cgcccgccga cgcattgaaa
      841 aacgtctgca ggacgacaaa gatttctacg tatgcagcct gtcgaacctg gtcaacattt
      901 ataaaggtct gtgtatgccg gcggatctgc cgcgcttcta cctggatctt gcggatctgc
      961 gtctggaatc ggccatctgc ctgttccacc agcgcttttc cactaacacc gtgccgcgtt
     1021 ggccgctggc gcagccgttc cgctacctgg cgcataacgg cgagattaac accatcaccg
     1081 gcaaccgcca gtgggcgcgc gcccgtacct ataaattcca gacgccgctg atcccggatt
     1141 tacaatccgc tgcgccgttt gttaacgaaa ccggttcgga ttccagctcg ctggacaaca
     1201 tgctggaact gctgctggca ggcgggatgg acattatccg cgccatgcgc ctgttggtgc
     1261 cgcccgcctg gcagaacaac cccgatatgg accaggatct gcgcgccttc tttgacttta
     1321 actccatgca tatggagccg tgggacggtc cggcaggcat cgtgatgtcc gacgggcgct
     1381 tcgccgcctg taaccttgac cgtaacggcc tgcgcccggc acgctatgtc attaccaaag
     1441 ataagctgat cacctgcgcc tccgaagtcg gtatctggga ctatcagccg gatgaagtgg
     1501 tcgagaaagg ccgcgtcggc ccaggcgagc tgatggtgat cgacacccgc ggcggacgta
     1561 ttctgcattc cgcggaaacc gatgacgatc tgaaaagccg ccatccgtat aaagcgtgga
     1621 tggaaaagaa tgttcgccgt ctggtgccgt ttgaagagtt gccagatgaa gaagtcggta
     1681 gccgcgaact ggacgatgac ctgctcgcca gctatcagaa acagtttaac tacagcgccg
     1741 aagagctgga ctccgttatc cgcgtgttgg gcgaaaacgg ccaggaagcc gtcggttcaa
     1801 tgggcgacga tacccccttt gccgtgctct ccagccagcc gcgtattatt tacgactact
     1861 tccgccagca gttcgcgcag gttactaacc cgcctatcga cccgctgcgg gaagcgcacg
     1921 tcatgtcgct cgccaccagc atcggtcgcg aaatgaacgt cttctgcgaa gcggaaggtc
     1981 aggcccatcg cctgagtttt aaatcgccaa ttctgctgta ctccgatttc aaacagctca
     2041 ccaccatgag cgagcatcac taccgcgccg actggcttga cattaccttt gatgtcaccg
     2101 aaaccacact ggacgcgacg gttaaggcgc tgtgcgataa agcggaacag atggtgcgca
     2161 acggcaccgt gctgctggtc ctctcggatc gcaatatcgg taagaatcgc ctgccggtcc
     2221 ccgcgccgat ggcggtgggc gcggtgcaga ctcgtctggt cgatcaaagc ctgcgctgcg
     2281 acgccaacat catcgtagaa accggaagcg cccgcgatcc gcatcacttt gcggtactgc
     2341 tcggctttgg cgcaacggcc atctatccgt acctggccta cgaaacgctg gggcgtctga
     2401 ttgataccca ggccatcgct aaaaactacc gtaccgtgat gcagaactac cgtaacggca
     2461 tcaacaaggg gctgtacaag attatgtcca aaatgggcat ttcgaccatt gcctcttacc
     2521 gctgctccaa actgtttgaa gcggtcgggc tgcacgatga tgtggtaaac ctgtgcttcc
     2581 agggcgtggt cagccgtatc ggcggcgcga gctttgatga cttccagcag gatctgctga
     2641 atctctccaa acgcgcctgg ctggcgcgca aacccattag cccgggcggc ctgctgaagt
     2701 acgtccacgg cggcgaatat cacgcctata acccggatgt cgtgcgtacc ctgcaacagg
     2761 cggtacagag cggcgagtac agcgattatc aggaatacgc caaactggtc aatgagcgtc
     2821 cggctgcaac gctgcgcgat ctgctggcga tacatccaga cggcgaggcg gtgactatcg
     2881 acgaggttga gcccgccagt gagctgttta aacgctttga taccgcagcc atgtctatcg
     2941 gcgcattaag tccggaagcg cacgaagcgc tggcggaagc gatgaacagc ctcggcggca
     3001 actccaactc cggcgaaggc ggcgaagacc cggcgcgcta cggcaccaat aaagtgtcgc
     3061 gtatcaagca ggtggcttcc ggccgttttg gcgtgacgcc agcgtacctg gtcaatgccg
     3121 atgtgattca gattaaagtc gcgcagggcg cgaaaccggg cgaaggcggt cagttgccgg
     3181 gggataaagt cactccgtat atcgctaaac tgcgctattc agtgccgggc gtgacgctga
     3241 tctccccgcc gccgcaccac gatatttact ctatcgagga cttagcgcag ctcattttcg
     3301 acctcaaaca ggtcaacccg aaggcgatga tctccgtgaa gctggtgtcc gaaccgggcg
     3361 tcggcaccat cgcgaccggc gtggcgaaag cctatgcaga cctcatcacc atcgctggct
     3421 acgacggcgg taccggcgca agcccgctct cttcggtgaa atacgctggc tgcccgtggg
     3481 aactaggact tgttgaaacc cagcaggcgc tggtcgccaa cggtctgcgt cacaagattc
     3541 gtctgcaggt ggacggcggt ctgaaaaccg gcgtcgatat catcaaagcg gcgattctcg
     3601 gtgcagaaag tttcggcttc ggcaccggcc cgatggtggc gctgggctgt aaatacctgc
     3661 gcatttgcca tctgaacaac tgcgcaaccg gcgtggcgac gcaggatgaa aaactgcgta
     3721 agaaccacta tcacggcctg ccgttcaaag tgaccaacta ctttgaattt atcgcccgcg
     3781 aagtgcgcga gctgatggct tcgcttggcg tgacccgcct ggtggatttg attggccgca
     3841 ccgacctgct gaaagagctg gagggcttca ccgctaaaca gcagaagctg gcgctgtctc
     3901 gtctactgga aaccgctgaa cctcatccgg gtaaagcgct gtactgcacc gagaataacc
     3961 cgccgtttga taacggtgtg ctgaatgcgc aactgttgca gcaggcgaag ccgtttgtcg
     4021 atgcgcgcca gagcaaaacc ttctggttcg acatccgcaa caccgatcgt tccgtgggtg
     4081 cgtcgctttc cggttacatc gcacagaccc acggcgatca ggggctggct tccgatccga
     4141 ttaaagcgca cttcagcggt accgcaggcc agagctttgg cgtgtggaac gcgggcggcg
     4201 tggagttata tctgactggc gatgccaacg actatgtcgg taaaggtatg gcaggcggtt
     4261 tgatcgccat cagaccaccg gtaggttccg ccttcctcag ccataaagcc agcatcatcg
     4321 gcaacacctg cctgtatgga gcgaccggtg gccgtctgta cgcggcgggg cgcgcgggcg
     4381 aacgtttcgg cgtgcgtaac tccggggcga ttaccgtagt agagggcatc ggcgacaacg
     4441 gctgtgaata catgaccggc ggcatcgtct gcgtgctggg taaaaccggc gttaacttcg
     4501 gcgcggggat gaccggcggc ttcgcctatg tgctggacga agatggcgaa ttccgtaaac
     4561 gcgtgaaccc ggaactggta gaagtactgg acgttgattc gctggctatc cacgaagagc
     4621 atctgcgcgg cctgatcacc gagcacgtgc aacatactgg ttcgcaacgc ggcgaagaga
     4681 tcctgtccag gtggtcaagc ttctcaaccc aattcgcgtt agttaagccc aagtccagcg
     4741 atgtcaaagc cctgttgggc caccgtagtc gtagtgcggc agaattgcgc gtgcaggcgc
     4801 agtaaggaat tgaaatgagc cagaatgttt atcaatttat cgacctgcag cgcgttgatc
     4861 cgccgaagaa accgctgaag ctccgtaaga tcgagtttgt tgaaatctac gaaccgtttt
     4921 ctgaaggtca ggcgaaagcc caggcggatc gctgtttgtc ctgcgggaac ccctactgcg
     4981 agtggaaatg tccggtacat aactacatcc cgaactggct gaaactggct aacgaagggc
     5041 gtatttttga ggcggctgag ctatcgcacc agaccaacac cctgccggaa gtgtgtggcc
     5101 gcgtctgccc gcaggaccgc ctgtgcgaag gctcctgtac gctgcacgat gagttcggcg
     5161 cagtgaccat cggtaacatt gagcgctata tcaacgataa agcgttcgaa atgggctggc
     5221 gcccggatat gaccggcgtg cgccagacgg acaaacgggt agcgattatc ggcgctggtc
     5281 cggcagggct ggcgtgcgcc gacgtgctga cccgcaacgg cgtgaaggcg gtggtctttg
     5341 atcgccatcc ggaaatcggt ggtctgctga ccttcggtat tccagctttc aaactggaaa
     5401 aagaggtgat gacccgtcgt cgcgagatct tcaccggcat gggtattgag ttcaaactta
     5461 ataccgaagt gggtcgtgat gtacagcttg aagatctgct gaaagattac gatgcggtat
     5521 tccttggcgt cggcacctat cagtcgatgc gcggcgggct ggaaaatgaa gatgcggacg
     5581 gggttttcga cgctctaccg ttcctgatcg ccaatacgaa gcagatcatg gggtttggcg
     5641 aaaccagcga cgaaccatat gtcagcatgg aaggcaaacg cgtggtggtg ctgggcggcg
     5701 gcgataccgc aatggactgc gtacgcactt ccatacgcca gggcgcaacg cacgtaacct
     5761 gtgcttatcg tcgtgatgaa gagaacatgc cgggttccag acgcgaagtg aaaaacgcgc
     5821 gcgaggaagg tgtcgagttt cagtttaacg ttcaaccgct gggcattgaa gtcaatgcca
     5881 acggcaaagt gagcggcgta aaaatggtgc gcactgaaat gggcgaaccg gatgccaaag
     5941 gccgtcggcg ggcggagatc gtcgccggtt ccgagcatgt ggttccggct gatgcggtgg
     6001 tgatggcgtt tggttttcgt ccacacagca tggaatggct ggcgaaacac agcgtggaac
     6061 tggactcgca gggacgaatt atcgcgccgg aacgcagcga taatgctttc cagaccagca
     6121 acccgaaaat cttcgccggt ggcgacatcg tgcgcggttc cgatctggtg gtgacggcga
     6181 ttgccgaagg ccgtaaagcg gctgacggga ttatgaacta cctcgaagtg taaccctttc
     6241 ggctccccgg ttgatgcctt gtgctgatgg ctggggagcc gatattcctc tcctcaatat
     6301 ctctcctgcc gattctggaa acccgctcgt aaatcgagat gtaatgccat gtaaaatccg
     6361 ttcatggatt gattcgttta cgcctgaagc gtattgatag cgttctaatt tcacaatgaa
     6421 actatcacgt aagggatgac atgacgaatc caactttagc gccacagtct gatgaatatc
     6481 agcaaattca tgacggtatt attcgtctgg tcgatacggc acgtaccgag accgtgcgca
     6541 gcatcaatgc cattatgact gccacctact gggaaattgg ccgacgtatt gtcgaatttg
     6601 aacagggagg agaagcgcga gcggcctatg gcacccagct tatcgaacga ttatcggtag
     6661 atttaagtca gcgctataag cgcggttttt ccaacagaaa cctatggcaa attcgtacat
     6721 tttatctttg ttttcaacac attgaaattc cgcagacact gtctgcggaa tcttcaaatc
     6781 tcataccgct cgccaaaaca ttccctcttc cctggtcagc ttatgtgcgt ctgctgtcgg
     6841 tgaaagataa cgatgcccgc actttttacg agaaagagac gctacgtaac ggctggtccg
     6901 tacggcaact cgatcggcaa atcgccactc aattttacga acgaacgcta ctgtcccacg
     6961 acaaatccgc catgttgcag cagcctgcac ccgccgagcc aaacgttttg ccggagcaag
     7021 ccatacgcga cccgttcatt ctggaatatc ttaacctgaa ggacgagtat tccgaatcag
     7081 atctcgaaga cgcgctgctc agccacctga tggactttat gctggagctc ggtgacgatt
     7141 ttgcttttgt tggccgccaa cgccgactac gcatagacga tagctggttc cgcgtcgatc
     7201 tgctgttctt ccatcgtcgc ttgcgctgcc tgttgctcgt tgacctgaag gtaggcaaat
     7261 tcggttatgc ggatgccggg c
//
LOCUS       DAJVSD010000222         7274 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.222, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000222 DAJVSD010000000
VERSION     DAJVSD010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7274)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7274)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7274
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.222"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            43..630
                     /locus_tag="OQP62_003664"
                     /pseudo
     CDS             43..630
                     /locus_tag="OQP62_003664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017466162.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
     gene            714..3410
                     /locus_tag="OQP62_003665"
     CDS             714..3410
                     /locus_tag="OQP62_003665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017441527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
                     /protein_id="HCS1723099.1"
                     /translation="MNNTWKSVLCPIACGVGMLLSASPYSASGKDIEFNTDFLDVKNR
                     DNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVT
                     QLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDW
                     DPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQAS
                     YDHRDDDESTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVS
                     DDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTL
                     HVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASW
                     GVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQ
                     GNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVT
                     YNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYN
                     GDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQSA
                     QADGYYSHQGALTDIDLSADYEEGSYRSLSMSLRGGMTLTTQGGALHRGSLAGSTRLL
                     VDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQ
                     ITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWL
                     AGVKAGETLKVFWDGTAQCEASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLP
                     AQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME"
     gene            3423..4196
                     /locus_tag="OQP62_003666"
     CDS             3423..4196
                     /locus_tag="OQP62_003666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001044456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
                     /protein_id="HCS1723100.1"
                     /translation="MNKTNHFNRQALIATVLLAAPLVSHSAIVPDRTRVIFNGNENSI
                     TVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAAG
                     LPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLT
                     LTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSP
                     VVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK"
     gene            4216..4722
                     /locus_tag="OQP62_003667"
     CDS             4216..4722
                     /locus_tag="OQP62_003667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000178262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1723101.1"
                     /translation="MTMLTRWKILVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCT
                     VGGASVEFGDVLTTKVGDVSQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQT
                     SVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNAS
                     ATLVVDYQ"
     gene            4737..5207
                     /locus_tag="OQP62_003668"
     CDS             4737..5207
                     /locus_tag="OQP62_003668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006667202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1723102.1"
                     /translation="MKRVLILTLLITRFACADNLTFHGKLINPPACTINNGETLEVSF
                     GSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTNVPGLG
                     IELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ"
     gene            5204..5740
                     /locus_tag="OQP62_003669"
     CDS             5204..5740
                     /locus_tag="OQP62_003669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001079648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1723103.1"
                     /translation="MNRIFQTTGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNL
                     VVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVVVTFQGVEDSTL
                     PGLLALESSSIANGFAIGIETADQHPLIINASQGTEFMLAEGNTIINLQAWLQKTSGE
                     NIMPGEFNASAMVNFEYQ"
     gene            5799..6917
                     /locus_tag="OQP62_003670"
     CDS             5799..6917
                     /locus_tag="OQP62_003670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000403445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723104.1"
                     /translation="MEIKKSILVRKNIRLSGIIIDMLILTILLISTFDAVSDSSPVKA
                     SAINIALQGTPNTDYELNGDLRSNGGIMPKTLYMVCSGGKFSASQADCVAGQWVDIEV
                     VISADSHTFMNLTNMGNLSSSAFQEKRRARCTAKNSNTMDCIWESNFDINLFFSPSTN
                     ISSIERQSLTLHIEPTNNASPSLQQINISGDLIYQPSDYAVYNQGYTPDVLAYVNFYA
                     KYNIVQSSFGTQTGPATGALPGRLNLNGNVATTVSLYPEQLDASFSKTEFSITSASKE
                     FTGSGNNELLAEIYLNYGLQHCQPQTADSICGQILANANVSTSCGDHNITITTNMCNT
                     GNDQCDSDETWKIAEIFGTWGRVNVDTICAITVLLPYE"
BASE COUNT         1946 a         1847 c         1824 g         1657 t
ORIGIN      
        1 tacaaaatgc tgccataaaa cacgttaatt aaggataaca cgatgaagtc atctcatttt
       61 tgtaaactgg cagtaactgc atctttagtt atgggaattg tctccggcgc tcaagccgcg
      121 ggtagcaaca cagcaaaggt tactttcctt ggtaatattg ttgattcccc ctgctctgtc
      181 acattggata cggaagatca aacagtcaat atgggctcaa gtatcggtaa tggcacgctg
      241 agtaatggta aaacgaccat caacaatgcc cgtacctttc atatcgatct tgagggttgt
      301 acctaggcta ccgagaaaaa tatgaatgtg gtattcacta caggtagtgg aaccacagcg
      361 gctacaggcg ccacggataa tctcgcgctg atgaagactg acggcactgg cgctattagc
      421 aacataagcc tggcaatcgg cgatgcaggc aaaaacaata tcaaactggg cgatacctat
      481 acacaggcca ttgcggacct ggacagagat accatccttg atgagaagca aagcctgaat
      541 ttcaccgcct ggctggttgg cgcagcaacc ggcaccgtag gcacaggtga attcagcagc
      601 gccgccaacg tcactatctc ttacctgtaa ttcagataac agagtcacga cgataaatac
      661 cctgccgctt taggtagggt attcctgttg agttttattg cggaatatat ttgatgaata
      721 acacatggaa aagtgttctt tgcccaatag cgtgtggagt gggaatgctt ctaagcgcct
      781 ccccttatag cgcgtcaggc aaagacatcg aatttaatac cgatttcctc gatgtaaaaa
      841 atcgcgataa cgtcaacatt gcacagtttt ctcgtaaggg ttttatcctg ccaggcgtct
      901 accttttaca aattaaaatt aacggacaga ctctgccgca ggaatttcct gttaactggg
      961 ttattccaga acatgatcca caaggaagtg aggtttgcgc agaaccagaa ttagttacgc
     1021 aattgggtat aaagccggaa ctcgcggaaa aactcgtctg gataacgcac ggtgaacgac
     1081 aatgtctggc gccagattca ctgaaaggca tggattttca ggctgacctg ggacactcca
     1141 cgctgctggt gaatttaccc caggcgtata tggaatacag cgatgtcgac tgggacccac
     1201 ccgcccgctg ggataatggt attcccggca tcattctgga ttacaacatt aataatcagc
     1261 tccgccacga tcaagaaagc ggcagcgaag agcaaagcat cagcggcaac gggacgttag
     1321 gcgcgaacct gggcgcatgg cgactacggg ccgactggca ggccagctac gaccatcgtg
     1381 acgatgacga gagcacttcc accctccacg atcagagctg gagccgctac tacgcctatc
     1441 gcgcactacc gacgctcggg gccaaactta cgctgggcga aagctatctc cagtccgatg
     1501 ttttcgacag ctttaactat atcggtgcca gcgtcgtttc tgacgatcag atgctgccgc
     1561 cgaaactgcg cggctatgcg ccggagatcg tgggcattgc gcgctctaat gcaaaagtca
     1621 aagtctcctg gcaggggcgc gtactgtatg aaacgcaggt gcccgcagga ccgttccgta
     1681 ttcaggatct caaccagtcc gtttccggta cgttgcacgt caccgtggaa gagcagaacg
     1741 gtcagaccca ggagtttgac gttaacaccg catcggttcc cttcctgacg cgccccggca
     1801 tggtgcgcta caagatggcg ctgggccgcc cgcaggactg ggatcatcac cctattaccg
     1861 gcacattcgc ctcggcggag gcttcgtggg gggtcaccaa cggctggtcg ctctatggcg
     1921 gcgcaattgg agaaagcaac tatcaggccg tggcgctggg aagcggtaag gatcttggcg
     1981 tggtgggcgc ggtggcggtg gacattacgc actccatcgc ccacatgccg caagacgacg
     2041 ggtttgacgg cgaaacgctg cagggtaact catatcgcat cagctactcc cgtgactttg
     2101 atgaaatcga cagccgacta acctttgccg gataccgctt ctcagaaaag aactttatga
     2161 gcatgagcga ctatctggat gcgaaaacct atcatcatct caatgccggt cacgaaaaag
     2221 aacgctatac ggtcacctat aaccagaact tccgtgaaca gggcatgagc gcctatttca
     2281 gctactcacg cagtaccttc tgggacagcc cggatcagag taactataac ctgtctcttt
     2341 cctggtactt cgacttaggg tcgataaaaa atctcagtgc gtcgctgaac ggctatcgca
     2401 gcgaatataa cggtgataaa gatgatggcg tctatatctc gctgtctgtt ccctggggca
     2461 atgattccat cagctacaac ggtacgttta acggtagtca acaccgtaat cagctcggct
     2521 attccggcca cagccagaac ggcgataact ggcagcttca cgtcgggcag gatgaacaaa
     2581 gcgcgcaggc agacggttat tacagccatc agggcgcgct gacggacatc gatctgagcg
     2641 cggattatga agaaggatcg taccgttcgc tgagtatgtc gctgcgcggc ggcatgacgc
     2701 tgaccaccca gggcggcgcg ctacaccggg gaagtttagc gggcagcaca cgtttgctgg
     2761 ttgataccga cggcattgcg gacgtccccg ttagcggtaa cggctcgcca acctcaacca
     2821 acattttcgg caaggccgtg attgcggatg tcggaagcta ttcgcgcagc ctggcgcgta
     2881 tcgatctgaa caaattgccg gagaaggcgg aagctactaa gtcggttgtg cagatcacgc
     2941 tcaccgaagg cgccatcggc taccgtcact ttgacgtggt cagcggcgag aaaatgatgg
     3001 cggttttccg gctagcagac ggcgacttcc cacctttcgg cgccgaagtg aaaaacgagc
     3061 gccagcagca gttgggcctg gtggccgatg acggcaacgc ctggctggcg ggcgtaaaag
     3121 ccggggaaac attgaaagtc ttctgggatg gcacggcgca gtgtgaagca tcactcccgc
     3181 ccacgtttac accagagcta ttggccaacg cgctattgct gccgtgcaaa atgctggaag
     3241 gtcagccccc caccgcaccg cagaaaagtt ctccgctgcc tgcgcaaccg ctaatccagg
     3301 aacatacgca aaccgatggc caaccggccg cgccggtggc gacaaccact caaaccccgc
     3361 ccataccgct ggctgacaac catgcggtga atcgcaagga tatggaataa agggaacctg
     3421 taatgaacaa gaccaaccat tttaatcgcc aggcgcttat tgccacggta ttactggctg
     3481 cgccgctggt gtcacacagc gcgattgtgc cggatcgtac ccgcgttatt tttaacggca
     3541 atgaaaattc aatcaccgtc acgctgaaaa acggcaacgc cactctgccc tatctcgctc
     3601 aggcgtggct ggaagacgat aagttcgcca aagatacccg ctattttacc gccctgccgc
     3661 cgctgcagcg tattgagcca aaatccgacg ggcaggttaa agtccagccg ttaccagccg
     3721 cggctggcct accgcaggac cgggaaagtc tgttttattt caacgtgcga gaaattccgc
     3781 cgaaaagcga taagcctaat acgctccagc tggcgctgca aacgcgtatt aagtttttct
     3841 accgcccggt agccgtagcc cggcaggtgg ataagacgca cccgtggcag acgaagctca
     3901 cgctgaccta ccagggcgat ggtgtgatct tcgacaaccc cacaccgttt tacctcgtca
     3961 tcagcaatgc cggtagcaaa gagaacgaga ccgcctccgg ctttaaaaac ctgctgattg
     4021 ccccgcgtga aaaagtgacc tctcccatca aaggtgcctc gctcggcagc tcaccggtgg
     4081 tgggctacgt cgatgattac ggcggccatc gcctgctggt ttttacctgc tcagggaata
     4141 cctgcaaggt caatgaggaa aaaacccgtg acgctgagaa gaaagcgaat aagtaatcct
     4201 gtgcgaaaga gatctatgac gatgttgact cgctggaaaa tactggtgct gctgtgcggt
     4261 ggattcgtta ccggcaccga ggctgccggc acaaaaaccg tgcaactgga gctgcatctg
     4321 gtcgtcactc aaccaccgcc ctgtacggta ggcggcgctt ccgtagagtt tggcgatgtc
     4381 ctgaccacca aagttggcga tgtttctcaa acgaaacctg tgggctacag cctgaactgc
     4441 gatggcagag cgagtgacta tctgaagcta caaattcagg ggaccaccac caccatcagc
     4501 ggggagcagg ttctgcaaac ttcggtgcag gggttaggca tccgtattca gcaggcgggc
     4561 aataagcaac tggttccggt tggcataacg gattggctga acttcaccct gagcggcagc
     4621 aatgggccgg agctggaagc cgtaccggtt aaagagccca ccacgcagtt agcgggtggc
     4681 gattttaacg ccagtgcgac gttagtcgtg gattaccagt gatggagaga ttcatagtga
     4741 aaagggtgct tatcctgacg cttttaatca cccggtttgc ctgcgccgac aatttgacct
     4801 ttcacggcaa actgataaac ccgcccgcct gtactatcaa taatggtgaa acgctggagg
     4861 tcagttttgg tagcgtgatt attgataata ttgacggcgt caattacctg accgagatcc
     4921 cgtggaccct tacctgcgac agcagctttc gcgatgacgc attaactttt acgttgagct
     4981 atctgggcac ggcgacgcct tactccgcaa aagccttaac caccaatgtc cctgggctgg
     5041 gcattgaact tcagcagaac ggcacggtgt ttcctcccgg cacgtcgcta accatcaatg
     5101 agtcatcgct tcccacacta aaagccgtgc cggtaaaaca gcccggtaaa gagcctgccg
     5161 aaggcgattt tgaagctttt gccacgttac aggtggatta ccaatgaacc gtatttttca
     5221 aactaccggg catttgatcg gaggcgtaat gttatgggcg gtttgcaata cgctacctgc
     5281 tgccacgcct aatgtgcact acagcggtaa gctggttgcc ggagcctgta acctggtagt
     5341 ggataatgac acgatggcga cggtggattt tcatactatt ggcagtgaca atttcgacgc
     5401 cagcgggcaa acgactcctg ttccattcac acttagcctc caggattgca aaacagcgct
     5461 agccaacggc gtggtggtga cctttcaggg tgttgaagac agtaccctgc ccggactgct
     5521 ggcgctcgaa tcgtcttcta ttgctaacgg ttttgctata gggattgaga ccgcagatca
     5581 gcacccgtta attatcaacg cttctcaagg tacggaattt atgttggcag agggaaatac
     5641 cattatcaat ctccaggcat ggctacaaaa aacatcaggg gaaaatatta tgcctgggga
     5701 atttaacgcc agcgcaatgg ttaattttga ataccaataa tgttatttaa caaaaaggca
     5761 ttgatgctct ggccagaata aaaaggagtt acaacgcaat ggaaataaaa aaaagcatct
     5821 tggttagaaa aaatatacgc ttgtcaggaa tcatcattga catgctcatt ttaaccatac
     5881 ttttaatcag cacgtttgat gctgtatctg actcttcccc ggtaaaagca agcgctatca
     5941 atattgcact tcaaggaact cccaacacag attatgaatt aaatggcgat ctccgctcta
     6001 acggagggat aatgccaaag acgctttata tggtatgttc aggaggaaaa ttcagtgcaa
     6061 gccaggctga ttgcgttgcc ggtcaatggg tagatatcga agttgtaata tctgcggaca
     6121 gtcatacgtt catgaatttg acaaatatgg gcaatttgag ttcttctgca tttcaggaaa
     6181 aaaggcgtgc tcgctgtaca gcgaaaaata gtaatacgat ggattgtatt tgggaaagta
     6241 acttcgacat taacttgttt ttttcacctt ctacaaacat ctcctcaatt gaaagacaat
     6301 ctctgactct ccatatcgag cctacgaata atgcatcacc ttctctacag caaatcaata
     6361 tcagcggcga cttaatctac cagccttctg actacgcagt gtataatcaa ggatatactc
     6421 ctgacgtctt agcctacgtt aatttttatg ctaaatacaa tatcgtccaa tcaagctttg
     6481 gtacacagac aggcccggcg acgggcgccc tgccgggacg cctcaatctg aacgggaacg
     6541 tagcgaccac agtttcttta tatcctgaac aacttgatgc ctctttttcg aaaacagaat
     6601 tttccatcac atctgccagc aaagaattta cgggttctgg taataatgaa ctactggcag
     6661 aaatctatct aaactatgga ctacagcatt gccagccgca aacggcagat agtatttgtg
     6721 gtcaaatatt agctaacgcg aacgtttcaa catcgtgtgg tgatcataat attactatca
     6781 caaccaatat gtgcaataca ggtaatgacc aatgtgatag tgatgaaaca tggaaaattg
     6841 cagagatctt cgggacatgg ggccgggtta atgtcgacac tatatgcgct attacagtat
     6901 tgcttcccta tgaataatgc ttagaaaaaa tactcggaac cctaaataat ctcgcaaaac
     6961 agtagattac ttatccgaaa aatttttcgg ccttcagtga ggggctctgc tccagttgcg
     7021 cgatcagatc atttaaccaa aataatagtc gaacaaaaga ggcgagccat gaacggctac
     7081 catttctttc gcgagttaag cgaagaatgc tgaaaaaaca gtacagaaaa gtcaggataa
     7141 agagttatac agacggctta ccactatccc aatgctgtat acaggattat tggttagttc
     7201 actttactgc tcctaaaaaa cctgcctcac ttaaaattta gcaaaattat tgaccaagga
     7261 aaacaaatgt gtac
//
LOCUS       DAJVSD010000223         7264 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.223, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000223 DAJVSD010000000
VERSION     DAJVSD010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7264)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7264)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7264
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.223"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(33..938)
                     /locus_tag="OQP62_003671"
     CDS             complement(33..938)
                     /locus_tag="OQP62_003671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiK family protein"
                     /protein_id="HCS1723105.1"
                     /translation="MRYDISRDAICYGFFMRLLKRVIVVVLLGVILFMVRDDIRYVYQ
                     LILKYGDKPSALALSSYKAVIQQKPVAGVKSNLSGLTYSAEDRMLFAVINNPPELVWL
                     TTEGQLVGRMPLQGIHDPESIAWSGGNQFQIGSEKDGAVYKTQVDIQRGAMQIISMVK
                     LEGYDKAKNKGLEGTAWDAKNERLYAAKERKPIMIKEVEMSKNGITRALPSAITASVS
                     DVSGLEYHAPTDSLLVLSDESKMILEVSSEWRVRDRLFLTAEWSGLRDDIPQPEGIAM
                     DNENNLYIVSEPNLFYKFSCDIQND"
     gene            1242..2642
                     /locus_tag="OQP62_003672"
     CDS             1242..2642
                     /locus_tag="OQP62_003672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1996 domain-containing protein"
                     /protein_id="HCS1723106.1"
                     /translation="MKLNLITVSLATLVAAGAFPAHAGPQAHVVCGYHHTLGDDAIMM
                     FGKANQAMWHDFFGNTHTDAVSTYQTLRAQPDTTCDNKADSSGYWAPSMKLPDGEIVN
                     PAYQKTYYQSTNVAQYPLHPFPAGLELLAGDHHGTGPSSAITFLCANGKGYTNKVGEI
                     CGLRKAGDAVQFNIGIAFPNCWDDVNLKPTHSHNNAIYADHGKCSADYPVKIPTVNMN
                     IAWVLPQISSLDTSKVELSMDPVMHGETREERWGSIYTAHADFMNGWTEDGAQFMTDL
                     CMNQGLDCGTAVPYAYSKAEENTWVSSEDDKPHASVDTLYVQDDWTNGGRTQHPETLT
                     LVKFKIPPLPANMDASLFKYRIRLFGGKTETNGADQIFFYPTSSDWHASSVSWNNKPA
                     INYRSDAVLYLNHSHEYRMVDVDKAVRKALAEGKTEISWYIGGDRQGNHYDFMPADSK
                     QSLVLMLTGFKKTPEL"
     gene            complement(2726..3379)
                     /locus_tag="OQP62_003673"
     CDS             complement(2726..3379)
                     /locus_tag="OQP62_003673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HCS1723107.1"
                     /translation="MPCKPDKRSVIRRNISGAIAMPSRAVLPRILGALFYYSPERPEV
                     KALFDCLPTLPELYPWRDRGHIESLCASWSLPDDDALTWQFSVLFEGQGKMPVPPWGS
                     VYLEKDNLLMGETTADYRAFLQSQGMVFTDREREPEDQFGLMLLACSDLLAQGDNVAA
                     NRLLEAHLLPWGFRYLELLQRNTVSAFYARLAIVATCYLQDVQQQQGLQPEKKRLFF"
     gene            complement(3394..4167)
                     /locus_tag="OQP62_003674"
     CDS             complement(3394..4167)
                     /locus_tag="OQP62_003674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit
                     family protein"
                     /protein_id="HCS1723108.1"
                     /translation="MHELPLVFFTVFTQSAVGAFILLLIGGAMGLVAPRRKAIGLFSV
                     MCLFGIGVVVGTFHVGQPLRALNMLLRVGHSPMSNEIVLSAAFVALGGLGALGLLLNR
                     ATPLCNALVWLAAIVGVVFLYAVPQIYQLPTVATWRSSYTTAMMILTPLIGGGALAAL
                     FGVRRLGLLVSVLAILVSFCLRPGYMATLMSADSALTAAQHSWFTAQAVLLAAGVVGV
                     VVCARLKSSATVLAMTAVVVIAAELAGRIAFYNLWTLPM"
     gene            complement(4160..4786)
                     /gene="dmsB"
                     /locus_tag="OQP62_003675"
                     /pseudo
     CDS             complement(4160..4786)
                     /gene="dmsB"
                     /locus_tag="OQP62_003675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463171.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
     gene            complement(4800..7234)
                     /locus_tag="OQP62_003676"
                     /pseudo
     CDS             complement(4800..7234)
                     /locus_tag="OQP62_003676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004391916.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
BASE COUNT         1763 a         2051 c         1798 g         1652 t
ORIGIN      
        1 gttttagcat gctgtgacag taaaaataga ttttagtcat tctgtatatc acacgaaaat
       61 ttataaaaca gatttggttc actcacaata tacaaattat tttcattatc catggcaatc
      121 ccttctggtt ggggtatatc gtctctgagc cctgaccact ccgccgtcag gaacaatcga
      181 tcgcgcaccc gccactcgga actgacctcc agaatcattt ttgactcgtc cgacaacacc
      241 agcagcgaat ccgttggggc atggtattca agtccggaga catcgctcac actcgcagtg
      301 atggcagaag gcaacgctct ggtgatacca tttttgctca tctctacttc tttgatcata
      361 atgggttttc tttcttttgc ggcatataat ctctcatttt tcgcatccca tgccgtacct
      421 tccagccctt tattttttgc tttgtcatag ccctcaagct tcaccatgga gattatctgc
      481 atagcgccgc gctgaatatc cacctgtgtt ttatagaccg cgccatcttt ctcactgcct
      541 atctggaact ggttgccccc actccatgca atagactccg ggtcgtggat gccctgcagc
      601 ggcatccgcc ctaccagctg cccttctgtc gttaaccaga ccagttcagg gggattatta
      661 ataacggcga aaagcatcct gtcttcggcg gagtaggtca aacctgaaag gttactctta
      721 actcctgcga ctggtttttg ctgaataacc gctttatagc tactcagtgc tagcgccgag
      781 ggtttatcac catatttgag gatcagttga taaacatagc gtatatcgtc cctgaccata
      841 aataaaatca cgcccaagag tacaaccaca ataacgcgtt ttagtaatct cataaaaaat
      901 ccatagcaga tcgcgtcacg actgatgtcg taacgcattt cttaaaaata aagccgatgt
      961 ccgatagaat cgttattcgg ttatggcgag cgccattagc ataggcaaaa tgaaatagtg
     1021 agggttatca caaaaagccc gattttaatc actaacgtac cctttttgta aattgacata
     1081 atcaagagga gggtagtttc ggctaattat ttaaatagta cgtctgcaaa ttcgcccctg
     1141 tatgcagggc aaatgacaaa aagtgataat taatgagatg taacaccgta atttgatctg
     1201 ctattgctgc tcccacttct attcaaccgg gcagcaaaaa aatgaaactc aaccttatta
     1261 ccgtcagcct ggctacgctc gttgccgctg gcgcattccc ggcccatgcc ggtcctcagg
     1321 cgcatgtcgt gtgcggctat caccacacgc tgggcgatga cgcgattatg atgtttggta
     1381 aagcgaatca ggcgatgtgg catgactttt ttggcaacac ccacaccgac gcggtctcta
     1441 cctaccagac gttgcgcgcg caacccgata ccacctgtga taataaagcc gacagctccg
     1501 gttactgggc accgtccatg aaattacccg atggtgaaat cgtaaatccg gcctaccaaa
     1561 agacctatta tcaatccaca aatgtagcgc aatatccgct ccatccattc ccggccgggc
     1621 tggagttact ggcaggcgat catcacggta ctggccccag ttccgcaatc acctttttat
     1681 gtgccaacgg caaaggttac accaacaagg taggcgaaat atgcggcctg cgtaaagcgg
     1741 gcgatgccgt ccagtttaat atcgggatcg ctttccccaa ctgttgggat gacgtcaacc
     1801 tgaaaccgac acatagccac aataatgcta tctatgccga ccacgggaaa tgttccgcag
     1861 actatccggt taaaatcccg acggttaata tgaacatcgc ctgggtactc ccgcagatct
     1921 cctcgctgga tacgtccaaa gtggaattgt cgatggaccc ggtaatgcat ggcgaaaccc
     1981 gggaagagcg ctggggaagt atttataccg cccatgccga ttttatgaat ggctggacgg
     2041 aagatggcgc gcagtttatg acggatctgt gtatgaatca gggactggat tgcggcactg
     2101 cggttcctta cgcctacagt aaagcggaag aaaatacctg ggtaagcagc gaagacgaca
     2161 agcctcatgc cagcgtcgat acgttgtacg tacaggatga ctggacaaat ggcggacgca
     2221 cgcagcaccc ggaaacgctc acgctggtga aatttaagat cccgcccctg cctgccaata
     2281 tggacgcttc gctattcaaa taccgtattc gcctttttgg cggcaaaacg gaaacgaacg
     2341 gcgccgatca aattttcttt tacccgacca gcagtgactg gcacgccagt agcgtgtcat
     2401 ggaacaataa accggcgatc aattaccgtt ccgatgccgt attatatcta aaccattcac
     2461 atgagtatcg catggttgat gtcgataaag cggtgcgcaa agcgctagcg gaagggaaaa
     2521 cggaaatatc ctggtatatc ggcggcgacc gtcagggaaa tcactacgat ttcatgccag
     2581 cggactcaaa acagagcctg gtgctgatgc tgaccggttt caaaaagacg ccggagctgt
     2641 aatagtaaac tgtgcccgct gacgcaacag cgggcacgat ggcgacacaa gcattacggc
     2701 acgtcgtcaa aacctgacca ataccttaga aaaacaaccg tttcttctca ggttgtagcc
     2761 cctgttgctg ctgaacatcc tgcagataac aggtcgctac gatggcaagc cgggcataga
     2821 aggcgctaac ggtattgcgt tgcagcaatt ccagatagcg gaatccccag ggtagcagat
     2881 gcgcctccag taaccggttg gccgccacgt tgtcgccttg cgccagcaga tcgctacagg
     2941 ctaatagcat caggccaaac tgatcttccg gctcgcgttc acggtcagtg aataccattc
     3001 cctgcgactg taaaaaagct cgataatcgg cggtggtttc ccccatcagc aaattatctt
     3061 tttccagata gaccgatccc cagggcggga cgggcatctt tccctggcct tcaaacaata
     3121 cggaaaattg ccatgtaagc gcatcatcat ccggtagcga ccatgacgcg cacagtgatt
     3181 caatatgtcc gcgatcgcgc caggggtaaa gctcaggcaa cgttggcaaa caatcgaaca
     3241 acgctttcac ctccggcctc tcaggggagt agtaaaacag tgcgccgagg atacgcggca
     3301 aaacagcacg ggaaggcata gcaatagctc ctgaaatatt tcgcctgatg acgctacgct
     3361 tatcaggctt acatggcaca agccgggcaa aaactacatt ggcagcgtcc acagattgta
     3421 aaacgcaatc ctacccgcca actccgccgc gataaccacc acagccgtca tggccagcac
     3481 cgtagcactc gatttcaggc gcgcgcagac caccaccccg accacgcccg ccgccagcaa
     3541 taccgcctgg gcggtaaacc agctatgctg cgcggcggtc agagcgctat cggcgctcat
     3601 cagcgtcgcc atatagcccg ggcgcagaca aaagctcacc aaaatcgcca acacgctgac
     3661 cagtagcccc agacggcgca cgccaaacaa tgccgccaac gcgccgccgc caatcaacgg
     3721 cgtcaatatc atcattgccg tggtgtaaga tgaacgccag gtcgccaccg tcggcagttg
     3781 gtaaatctgc ggaacggcgt ataagaagac caccccgact atcgccgcca accagaccaa
     3841 cgcgttacac agcggcgtcg cacggttcag caataaaccg agcgccccca gaccgccgag
     3901 cgccacaaaa gccgccgaca agacaatctc gttactcatc ggcgaatgtc cgacgcgcag
     3961 cagcatattc agcgcacgca acggttgccc gacgtggaag gtaccgacaa cgacgccaat
     4021 cccaaacagg cacatcaccg agaacagacc gatagcctta cgccgcggcg cgaccagccc
     4081 cattgcgccg ccaatcagca gcagaataaa cgcgccgacc gcgctctggg taaagaccgt
     4141 aaaaaagacc agcggtaact catgcatggc gcacctcccg aatgttcatg attgcgcctt
     4201 ccgtatcgcc cgtgggtctc gctttcggat gcggtttaat aatgaggtta ggatgggtga
     4261 acgacgccga aggcagcggc gcgatttgat tctccgtgcc atattttgcc cgtaattcat
     4321 cgacagggcc gaaatccagc gctcgctgcg ggcaagaatc cacacaaatg gggcgcagat
     4381 tgttctccag tcagtcaaga caaccgtcgc atttacgcat cacgtttgcc tgcgtatcaa
     4441 actgcggcgc gccgtagggg cagcgcattt cacaatagcg acagccgacg catacgctgt
     4501 catccaccac gaccagacca tcttctttgc gtttatgcat cgccccggtc ggacagccgg
     4561 agacacatac cggctcatcg caatggttac aagcaataga gaggtagtag gtaaaggtgt
     4621 cgtgatgcca gctttccccc tctttcaccc agcttccgcc gccatattca tagacgcggc
     4681 gcagtttcgg gccgacatcc agatctttat tatccttgca gcttacctgg caggttttac
     4741 agcctgaaca gcgcgaggag tcaacataaa agccacactg tttcatcgta catcactcct
     4801 taagcgcgtt taatttcaac cagattggta tgctgcggat tgcctttcgc cagcggcgaa
     4861 gggtgatggc tggtcagcgt attgatacag ccgccgacat caacaccgtt gccgtcaagc
     4921 cgcgtccacg cgccctgcgg catcgccgcc acgccgggta aaatgcgctg ggtaacttta
     4981 cagggaagct ccaccacgcc gcggtcattg aatacatgca cccgatcgcc ggacttcagt
     5041 tggcgggcgc tggcgtcaat cgggttaatc cagacttcat ccggcaccgc ctcatgcagc
     5101 atcagcacat tgctgtaggt cgagtgggta tgccctttgg tatggaaacc gcttaactgc
     5161 aacggatact tcgccgtcaa tgctttgtta aggtgcgact ctttcgctgg acaaaattcc
     5221 ggcaatgcgg gaattcgctc gccttctggc aacgtccacg cttgcgccag atccgccagc
     5281 gcctaggagt aaatttcaat tttgcccgac ggcgtggaga gtggattagc ctcggcgtcg
     5341 gcgcggaaat cagcaaacgc aaggctctgc tgctcggtag cgatacgctg gtcaatcacg
     5401 cccatctctt tcgccacgct ccactccggc aggtatggac gtttttcacg gatctgctga
     5461 tagtgcatct ccgcccactg cgcctgagtt cggccctcgg tatattgctc gcgcagtcca
     5521 agatgcccgg cgatatccgc gcagatgtca tacgtgctgc gcacttccca catcggttta
     5581 acggttttct gaatcgcaat catatagtta tgcgatcctg ccgcatagga gctgtccacc
     5641 aggtcttccg cctcaagata gctggtctcc ggcaacagca gatccgcata catcgcgctg
     5701 ggcgtcatat ggttttcaat cacgataatg gtttcacaca gcgattcatc cgcgagaatt
     5761 tgacgggtgc ggtttgtttc gccgtgctga ttaagcaaag tattaccggc ctggttgaaa
     5821 aacagcttaa tcccggtttt tagcctgtcc gcgcctttta cgcccattgt cgtcgcggtc
     5881 attttctccg gatgctgaat ggcgtccgtc cacagatagc aaggaataga ggttgtgatc
     5941 ggattcttac cgacaggcaa caatggcacg ccatacggcg taccgtaagg ccagttgcca
     6001 ttattggtgc cgggccgccc gaagtggccg gttaacgctg gcagcgtctg aatagcacgc
     6061 acggtttgtt cgccgttggc atgacgctgc ggcccccagc cctggcaaat atagcaggcg
     6121 cgcgcgaggc gatttcgcgc gccagttggc gaatacgcgt tgccggaatt ccggtgatat
     6181 ccgccgccca ttccggggtt ttcgcgatac cgtcatcgcc cgtgccaaga acataatctt
     6241 tatagctggc gttaggcgca gccgtgtccg gcaaggtgct acggtcatag ccgacgcaat
     6301 agcggtttac cagcgcctcg tcgagaagct gttcggtaat cagcgtatgc gctatgccgg
     6361 cgactagcgc ggcgtccgtg gttgggcgaa tcggtagcca ttcggcgtgt tcggtaatca
     6421 ccgaatcggt atagcgcgga tcgataataa tgactcgggc tttcgaggtc tccagcgccc
     6481 ggcgcagctc ttcaacctga ccgccgccgg acatccgcgt ttctgagaga ttcaggccaa
     6541 atagcaccac cagatcggaa tgcgcgatct gcgtaaaatg gctaccgaca taatcaccgt
     6601 gggtataagg cgtggcggcg gcgatttgcg ccgtggaata ggtgttgtga taatttaaat
     6661 aaccgccggt gagatttagt aatcttatcc aggcgggtct accctgcgtg tgataatacg
     6721 cgccggattg ataattataa taaatagctt cccggccata tttttcgcta acgcgcgtta
     6781 attccgccgc aataaaggct gtggcctcat cccatgaaat acgtttaaat tttccttcgc
     6841 cgcgttttcc cactcttttc atcggatact taatgcgatc cgggctataa acgcgccagc
     6901 gactggaacg cccgcgcagg cagggacgaa tctgatgctc gccgaatacc gcgtcatctt
     6961 tcgcgtcttc cggttcaata cgcacaatgc gatcattttt cacgataacc ttaagcgggc
     7021 atcggctgcc acagttgacc agacaggcgc tgtgcctgac ggtttcgccg ttggcatcct
     7081 tcggtatcgg ggtatcctgc gcctgggcag tggtagcaaa aggcagcgta atcgcctgac
     7141 ttagcgtcac cgccgcccct acttttgcag tagcgacaat agcatcacgt cgggttatgg
     7201 ttgtgttcag ccatttttta tttccatttt ttatttctca cattgcttcc ataattatta
     7261 ataa
//
LOCUS       DAJVSD010000224         7251 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.224, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000224 DAJVSD010000000
VERSION     DAJVSD010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7251
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.224"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(40..570)
                     /gene="ppa"
                     /locus_tag="OQP62_003677"
     CDS             complement(40..570)
                     /gene="ppa"
                     /locus_tag="OQP62_003677"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001739810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HCS1723109.1"
                     /translation="MSLLNVPAGKELPEDIYVVIEIPANADPIKYEVDKESGALFVDR
                     FMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGAVIRCRPVGVLKMTDESGE
                     DAKLVAVPHTKLSKEYDHIKDVNDLPELLKAQITHFFEHYKDLEKGKWVKVDGWDNAE
                     AAKAEIVASFERAAKK"
     gene            complement(797..1795)
                     /gene="fbp"
                     /locus_tag="OQP62_003678"
     CDS             complement(797..1795)
                     /gene="fbp"
                     /locus_tag="OQP62_003678"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016233757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HCS1723110.1"
                     /translation="MKTLGEFIVEKQHEFSQATGELTALLSAIKLGAKIIHRDINKAG
                     LVDILGASCAENVQGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEH
                     AKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVV
                     YGSSTMLIYTTGCGVHAFTYDPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVK
                     KYIKFCQEEDSSTSRPYTSRYIGSLVADFHRNLLKGGIYLYPSTASHPQGKLRLLYEC
                     NPMAFLAEQAGGKASDGKERILDIIPESLHQRRSFFVGNRHMVDDVERFIREYPDA"
     gene            1970..3343
                     /gene="mpl"
                     /locus_tag="OQP62_003679"
     CDS             1970..3343
                     /gene="mpl"
                     /locus_tag="OQP62_003679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001219848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HCS1723111.1"
                     /translation="MRIHILGICGTFMGGLAMLARSLGHEVTGSDANVYPPMSTLLEK
                     QGIDLIQGYDASQLDPQPDLVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRD
                     RWVLAVAGTHGKTTTAGMATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEAD
                     EYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRII
                     WPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDTSEWEVWLDGEKVGDVKWGLV
                     GEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHHP
                     TAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRADEVFLLQPPHI
                     PWQVSEVADACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNGGFGGIHQKLLDGLA
                     KKALVVG"
     gene            complement(3450..4001)
                     /locus_tag="OQP62_003680"
     CDS             complement(3450..4001)
                     /locus_tag="OQP62_003680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HCS1723112.1"
                     /translation="MTKQPEDWLDDVPGDDIEDEDDEIIWVSKSEIKRDAEELKRLGA
                     ELVDLGKNALDKIPLDADLRDAIELAQRIKMEGRRRQLQLIGKMLRQRDVEPIRQALD
                     KLKNRHNQQVVLFHKLEHLRDRLIVEGDDAVAEVLTLWPHADRQQLRSLIRNAKKEKE
                     GNKPPKSARQIFQYLRELAENEG"
     gene            4097..5449
                     /gene="pmbA"
                     /locus_tag="OQP62_003681"
     CDS             4097..5449
                     /gene="pmbA"
                     /locus_tag="OQP62_003681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HCS1723113.1"
                     /translation="MAFAMKVISQVEAQRKILEEAVSTALELASGKSDGAEVAVSKTT
                     GISVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAALDIARY
                     TSPDPCAGVADKELLAFDAPDLDLFHPAEVTPDEAIELAARAEQASLKADKRITNTEG
                     GSFNSHYGIKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMADLQA
                     PEWVGAECARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGAVYRKSTFL
                     LDSLGKQILPEWLTIEEHPHLLKGLASSPFDSEGVRTERRDIVKDGVLTQWLLTNYSA
                     RKLGLKSTGHAGGIHNWRIAGQGLNFEQLLKEMGTGLVVTELMGQGVSGITGDYSRGA
                     AGFWVENGEIQYPVSEITIAGNLKEMWRNIVTVGDDIETRSNIQCGSVLLPEMKIAGQ
                     "
     gene            5547..5933
                     /gene="cybC"
                     /locus_tag="OQP62_003682"
     CDS             5547..5933
                     /gene="cybC"
                     /locus_tag="OQP62_003682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b562"
                     /protein_id="HCS1723114.1"
                     /translation="MRKSLLAILAVSSLVFGSAVFAADLEDNMDILNDNLKVVEKTDS
                     APELKAALTKMRAAALDAQKATPPKLEDKAPDSPEMKDFRHGFDILVGQIDGALKLAN
                     EGNVKEAKAAAEALKTTRNTYHKKYR"
     gene            6211..6549
                     /locus_tag="OQP62_003683"
     CDS             6211..6549
                     /locus_tag="OQP62_003683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine dehydrogenase"
                     /protein_id="HCS1723115.1"
                     /translation="MRRVDNGAVKHDAGERINELAEQVLTQVDGLLGRHHIVPNAVQT
                     QMLTSHVRAMAHRSITGEPLPEVDASLFDEISAESMALAREIVAAFGNLPDEEAWLLS
                     VHFEVAKDNL"
     gene            6560..6922
                     /locus_tag="OQP62_003684"
     CDS             6560..6922
                     /locus_tag="OQP62_003684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723116.1"
                     /translation="MEQITVVIGDRLGKGQKVAAGVEKAGGRAVVVPGVAADMKLGDV
                     MKAENATFGISFCGSGGAGAITAQNKHGYKAKYGMRSVDEGVTAINEGCNVLGFGFMD
                     KEELGERLVQAWQKKYGA"
     gene            6922..7224
                     /locus_tag="OQP62_003685"
     CDS             6922..7224
                     /locus_tag="OQP62_003685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4312 family protein"
                     /protein_id="HCS1723117.1"
                     /translation="MMKEQFTTTVRVKGKGDAKARAFADALNHVQSAVMRESPYILLR
                     IEPQDVRIVQAHESVRKEAFLFFFLRRERRTYSVELDVAVNVTAINLDRVDFVAKR"
BASE COUNT         1680 a         1828 c         2058 g         1685 t
ORIGIN      
        1 tatgagagcc tttatcttga cgattatgta aaagcgaact tatttcttcg ctgcgcgctc
       61 gaaagaggca acgatttccg ctttagccgc ttcggcgttg tcccaaccgt caactttcac
      121 ccatttgcct ttttcgagat ctttataatg ctcgaagaaa tgagtgatct gcgctttcag
      181 cagttccggc agatcgttca catctttaat gtgatcgtac tctttgctca gtttggtgtg
      241 cggtacggca accagtttcg catcttcacc ggattcgtcg gtcattttca gtacgccaac
      301 cggacggcaa cggatgacgg cgcctggctg cagcgggtac ggcgtcggga ccagaacgtc
      361 taccgggtcg ccgtccagag acagggtatg gttgatgtaa ccgtagttgc acggatagaa
      421 catcgcggtg gacatgaagc ggtcaacgaa cagcgcgccg ctctctttgt caacttcgta
      481 tttgatcgga tctgcgttag ccgggatctc gataacgacg tagatatctt ccggcagttc
      541 tttacccgcc gggacgttga gtaagctcat gtctgtttcc tttgaagtta tgacaaacaa
      601 gtggcgagta ttatagccaa ctcacgccga aagtcttcgc ttgttttcgt ttccgcctca
      661 tctggcgcgt cgttgcggag cataaacgac aaaggttaag aaccgaaaaa atcacgggcc
      721 tgataaggca acgccgccat cggacatctt attgcccaat ggcggcttca tgcgttattc
      781 cgcatggtgg taaagattac gcgtccgggt attcgcggat aaagcgttcc acatcgtcaa
      841 ccatatggcg gttgccgacg aagaacgagc ggcgctggtg caggctttcc ggaatgatat
      901 ccagaatacg ttctttacca tcgcttgctt tgccaccggc ctgttccgcg aggaacgcca
      961 tcgggttgca ttcatacagc agacgcagtt tcccctgcgg atggctggcg gtgctggggt
     1021 agagatagat gccgcctttc agcaggttgc ggtggaaatc ggccaccaga gagccaatgt
     1081 aacgtgaggt ataagggcga cttgttgaac tatcctcttc ctggcagaat ttgatgtact
     1141 tcttcacgcc attcgggaac ttaatgtagt tgccttcgtt aatggagtag gttttaccct
     1201 tttccgggaa acgcatacgt tcttggcaca gacagaacac gcccaacgac ggatcgtagg
     1261 tgaaagcgtg tacgccgcag ccggtggtgt aaatcagcat ggtggacgag ccatacacga
     1321 catatcccgc agcgacctgt ttgttgccgg gttgcaggaa atcttcttcg gtgaccggcg
     1381 tgccgacggg cgtcacgcgg cgataaatcg agaaaatcgt accgacagag acgttaacgt
     1441 cgatgttaga agagccatcc agagggtcca tcagcaccac atatttcgcg tgttcgcagc
     1501 cttcaaagac gacaatttcg tcctcttctt ccgatgcgat gcccgctaca atatcgcgcg
     1561 cttttagtgc agctttcagt ttctcgttcg cgaacagatc gagtttctgc tgaacctcgc
     1621 cctgtacgtt ctcagcacag ctggcaccca ggatatcgac cagaccggcc ttgttgatat
     1681 cgcggtggat gatcttggcg cccaatttta ttgccgacag caaagcagtg agctcaccgg
     1741 tagcctgaga gaactcgtgc tgcttttcga caataaattc acctaacgtt ttcataacac
     1801 tttccctgca attgattgga gtaaagcgac cgtaacaatc ttaacaaaca tttcagatga
     1861 tgcgctcagg tgaatcgcgc cagcaaagta cagatttacc tgaaatgcgt ttctcacttg
     1921 ccagacatgt gcgtaaaatg gctcgcagat aaaaaaagga tagtgacgta tgcgcattca
     1981 tattttggga atttgtggca ctttcatggg ggggctggcg atgctggctc gctcgcttgg
     2041 tcatgaagta acgggttcgg acgccaatgt gtatccgccg atgagtacct tacttgagaa
     2101 gcaaggcatt gatctgatcc agggttatga cgccagccag ctcgatccgc agccagatct
     2161 ggtgattatc ggcaatgcga tgacgcgcgg gaatccgtgc gtggaagcgg tgctggaaaa
     2221 aaacattccc tttatgtctg gtccacagtg gctgcatgac tttgtgttgc gcgaccgctg
     2281 ggtactggcg gtcgccggta cccacggtaa aaccacgacc gcaggcatgg cgacctggat
     2341 actggaagcg tgcgggtaca aaccgggctt cgtgatcggc ggcgtaccgg gcaattttga
     2401 ggtttccgca cgcctgggcg agagcccatt ctttgttatc gaagcggatg agtacgactg
     2461 cgcgttcttt gataaacgtt ctaaatttgt gcattactgc ccgcggacgc tgatcctcaa
     2521 caaccttgag tttgatcatg ccgacatctt cgacgatctg aaagcgatcc agaagcagtt
     2581 ccaccacctg gtgcgcatcg tgccggggca ggggcgcatc atctggccgg aaaacgacat
     2641 caacctgaaa cagaccatgg cgctgggctg ctggagcgag caggagctgg tgggcgagca
     2701 gggacactgg caggcgaaga agctgactac ggatacttcc gagtgggaag tgtggctgga
     2761 cggcgaaaaa gtcggcgatg tgaaatgggg cctggtcggc gaacataaca tgcacaacgg
     2821 tctgatggcg attgccgccg cgcgccacgt gggcgtcgcg cccgcagaag cagccagcgc
     2881 gctggggtca tttattaacg ctcgccgccg tctggagcta cgcggtgaag cgaacggcgt
     2941 gacggtgtat gacgattttg ctcaccatcc tacggcaatt ctggccacgc tggcggcgct
     3001 gcgcggtaaa gtgggcggca ccgcgcgcat tatcgcggta ctggagccgc gttctaacac
     3061 gatgaagatg gggttatgca aggatgacct ggcgccgtcg ttagggcgtg cggatgaagt
     3121 gttcctgctg cagccgccgc atattccgtg gcaggtttca gaagtggcgg acgcctgcgt
     3181 acagcctgct cactggagtg gagatgtcga tacgctggcg gatatggtgg tgaaaaccgc
     3241 acagcctggc gatcacatcc tggtgatgag caacggcggt ttcggcggca tccatcagaa
     3301 attgctggat gggctggcga aaaaagcact ggttgtgggg taaaaaatgc ccggtggcgc
     3361 tgcgcttacc gggcctacaa tacgtacatt cccgtaggcc ggataaggcg ttagcgccgc
     3421 catccggcag acgctatcaa catgtaaaat tacccttcgt tttccgccag ctcgcgcaga
     3481 tactggaaga tctgacgcgc tgatttcggc ggtttgttgc cttctttctc tttcttcgca
     3541 ttgcggatca atgaacgaag ctgttgacga tcggcgtgcg gccacagggt cagtacttcg
     3601 gctaccgcgt catcgccttc gacgatcaga cgatcgcgca gatgctcaag cttgtgaaac
     3661 agcaccacct gctgattatg gcggttcttc agcttgtcca gcgcctggcg aataggttca
     3721 acgtcgcgtt ggcgcagcat ttttccgata agctgcaact ggcggcggcg tccttccatt
     3781 ttgattcgct gggccagttc aatggcgtcg cgcagatcgg cgtccagcgg gatcttatcc
     3841 agcgcgtttt tccccagatc caccagttcc gcgcccaggc gttttaattc ctcggcatcg
     3901 cgtttaattt cacttttact gacccagata atttcatcgt cttcgtcttc gatgtcatca
     3961 ccgggaacgt cgtcgagcca gtcttcgggc tgctttgtca tgtcaggctc cttaaaaaaa
     4021 gaggctaatg ttaccagtta agatgcgcac tgaaaaacgg ttctctgtta gacttcagag
     4081 aaactctctc tacattatgg catttgcaat gaaagtaatc tcacaagttg aagcgcagcg
     4141 taagattctg gaagaagcag tttcgacagc gctggagtta gcctcaggca aatcggatgg
     4201 ggcggaagtc gccgtcagca agactaccgg cattagcgtc agcacccgtt atggtgaagt
     4261 agagaatgtc gaatttaata gcgacggcgc gctgggaatt acggtgtatc accagaaccg
     4321 caaaggcagc gcctcttcga cggatttaag cccgcaggcg attgcccgta ccgtgcaggc
     4381 cgcgctggat atcgcgcgtt acacgtcgcc ggacccgtgc gcaggcgtgg cggacaaaga
     4441 actgctggcg tttgacgcgc cggatctgga tttgttccac ccggcagagg ttacgccaga
     4501 cgaagccatt gaactggccg cgcgtgcgga acaggcttct ctaaaggcgg ataaacgcat
     4561 caccaatacc gaaggcggta gctttaacag ccattacggc attaaagtgt tcggcaacag
     4621 ccacggtatg ttgcagggat attgctccac gcgccattcg ctctcaagct gcgtcatcgc
     4681 cgaagagaac ggcgatatgg agcgtgatta cgcttacacc atcggccggg caatggcgga
     4741 tctgcaagcg ccggaatggg tcggggccga gtgcgcgcgc cgtaccttat cccgcctgtc
     4801 gccgcgcaag ctctccacca tgaaagcgcc ggtcattttc gccaatgaag tggcgacagg
     4861 gctatttggt catctggtcg gggcgattgc cggcggcgcg gtataccgta aatccacttt
     4921 tctgctcgac tcgctgggca aacaaattct gccggaatgg ttaaccatcg aagaacaccc
     4981 gcatctgcta aaagggctgg cgtcttcacc gttcgacagc gaaggcgtgc gtacggagcg
     5041 ccgggacatt gtgaaggatg gcgtactgac gcaatggttg ctgaccaact attccgcccg
     5101 caaactgggg ctgaaaagta ccggtcatgc tggcggcatt cataactggc gtatcgccgg
     5161 gcaggggctg aactttgagc agttactgaa agagatgggt accggcctgg tggtgacgga
     5221 actgatgggc cagggcgtca gcggtattac cggcgactac tcccgcggcg ctgcgggatt
     5281 ctgggttgaa aatggtgaaa tccagtaccc ggtaagtgaa attaccattg ccggtaattt
     5341 aaaagagatg tggcgtaata ttgtcaccgt aggcgatgat attgaaacgc gcagtaatat
     5401 acaatgtggt tcggtattgt taccggagat gaaaatcgcc ggacaataat acccgtcata
     5461 cttcaggctg caggcgcgtt ggctgcctgc aactcgaatt attcagggta ttacacttat
     5521 cgttaataat aaaaaggaag tgagcaatgc gtaaaagcct gttagctatt cttgctgtgt
     5581 catcgctggt attcggttcg gctgtttttg ctgccgatct tgaagataat atggatattc
     5641 tcaatgataa cctgaaagtt gttgagaaaa cggatagtgc ccctgagctg aaagcggcat
     5701 taactaaaat gcgcgcggcc gcgctggatg ctcaaaaagc tacgccgcca aagctggaag
     5761 ataaagcgcc ggatagcccg gaaatgaagg attttcgtca cggttttgac attctggtcg
     5821 gccaaattga tggcgcgctg aagctggcga acgaaggtaa cgttaaagaa gcgaaagcgg
     5881 cggcggaagc gctaaaaacc acccgcaata cgtatcataa gaagtatcgt taatttttgt
     5941 gggatggcgg cttcgcttta tccgcaggtc gccatccggc aaaatgtaat acccatcaca
     6001 ctttctcact ttatacgaca acgtcattgt ttcgccattt cctctttatg ccgcgataga
     6061 tctcacactt tcccggcgat aattcatcaa tgccgctttt tctgtggcgc agatcaccta
     6121 tcccactcgc gtttccactt cgaggtggaa aataactcgc tacaaacttt taacccttac
     6181 cgctagtttt atctcattgc cattaatggg gtgagacgcg tggataacgg agcagtaaaa
     6241 cacgatgccg gtgagcgaat taacgaactg gctgaacagg tgttaacgca ggtggatggc
     6301 ctgctggggc gacatcacat tgtccccaat gcggtacaga cgcaaatgct gacctcgcac
     6361 gttcgcgcga tggcgcaccg gtcaattacc ggcgagcctt taccggaagt cgatgccagc
     6421 ttgtttgatg aaatctcagc cgaatcaatg gcgctcgccc gcgaaatcgt ggcggcgttt
     6481 ggcaaccttc ctgacgaaga agcctggcta ttatcggtac attttgaagt cgcgaaagac
     6541 aacctctaag gagcaaaaaa tggaacagat taccgtcgta attggcgatc gcctgggtaa
     6601 aggccagaaa gtggcggcag gcgtggaaaa agcgggcggt cgcgcggtcg tcgtaccggg
     6661 cgtcgcggca gacatgaagc tgggcgatgt gatgaaagcg gaaaacgcca ccttcggcat
     6721 ttcattttgc ggcagcggcg gcgcgggcgc tatcaccgcg caaaacaagc atggctacaa
     6781 agccaaatat gggatgcggt cagtagatga aggagtcacc gctatcaatg agggctgcaa
     6841 cgtgttgggt ttcggcttta tggataaaga agagctcggc gagcgcctgg tgcaggcgtg
     6901 gcaaaagaaa tacggcgcct gatgatgaaa gagcaattca ccaccacggt gagagtaaaa
     6961 ggcaagggcg acgccaaagc acgcgccttt gccgatgcgc tgaaccatgt tcagtcggcg
     7021 gtgatgagag agtcgccgta tatcttactg cgtattgagc cacaggatgt gcggattgtt
     7081 caggcgcatg agtcggtgcg taaagaggcc tttctgtttt tctttttgcg ccgggaacga
     7141 cgcacttaca gcgtggagct ggatgtggcc gtcaacgtga ccgccatcaa tctcgacagg
     7201 gtggatttcg tcgcgaaacg ctgattttta ttaaaaaggc atagttatgt t
//
LOCUS       DAJVSD010000225         7194 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.225, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000225 DAJVSD010000000
VERSION     DAJVSD010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7194
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.225"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            255..902
                     /gene="narP"
                     /locus_tag="OQP62_003686"
     CDS             255..902
                     /gene="narP"
                     /locus_tag="OQP62_003686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite response regulator protein NarP"
                     /protein_id="HCS1723118.1"
                     /translation="MPEVTPFQVLIVDDHPLMRRGIRQLLELDPAFYVVAEAGDGASA
                     IDLANRIEPDLILLDLNMKGLSGLDTLNALRRDGVTAQIIILTVSDSASDIYALIDAG
                     ADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVNEYLRERERFGAQEDPFSILTERELD
                     VLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQTRGMQ"
     gene            complement(946..1989)
                     /locus_tag="OQP62_003687"
     CDS             complement(946..1989)
                     /locus_tag="OQP62_003687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein CcmH"
                     /protein_id="HCS1723119.1"
                     /translation="MRLLPGMVMLMLALVISGSARATTDVMPFKDEAQEQQFRQLTEQ
                     LRCPKCQNNSIADSNAMIATDMRRRVYDLMQEGKSRQEIIDYMVARYGNFVTYDPPLT
                     PLTVLLWVLPLAAIVAGGWIIVARTRRRVRLRREPLPADTPVCGARAGWGVYVPGAVI
                     ALAVGAGSYALTGSYPQVRAWQQATAQTPGLLARALDPQAQPLNEEEMARLALGLRTR
                     LQNDAGNVEGWLMLGRTGMVLGNAGTATGAYANAYRLDPENRDAALGYAEALTRSSDP
                     EDNRRGGELLRQLVSRDHTDIRVLSLYAFSAFEQQRFGEAVAAWEMMLKLLPAGDARR
                     AVIERSIRLAQEK"
     gene            complement(1986..2543)
                     /gene="dsbE"
                     /locus_tag="OQP62_003688"
     CDS             complement(1986..2543)
                     /gene="dsbE"
                     /locus_tag="OQP62_003688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbE"
                     /protein_id="HCS1723120.1"
                     /translation="MKRNVLLLPLLIFLLIAAALLWQLARNAQGDDPTNLESALTGKP
                     VPAFRLESLETPGQYYQAEVLTQGKPVLLNVWATWCPTCRAEHQYLNRLAAQGIRVVG
                     LNYKDDRAKAVAWLKELGNPYALSLSDSDGMLGLDLGVYGAPETFLIDGRGIIRYRHA
                     GDLNARVWESELKPLWDRYSREAAQ"
     gene            complement(2540..4471)
                     /locus_tag="OQP62_003689"
     CDS             complement(2540..4471)
                     /locus_tag="OQP62_003689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HCS1723121.1"
                     /translation="MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAW
                     LLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLL
                     MSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRD
                     LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVF
                     LTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWT
                     LLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRG
                     HRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFN
                     TMFTWLMVPFALLLGVGPLVRWGRDRPRNIRKLLLTALVSTLVLSVLLPWLLEDRIIA
                     MTAVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYS
                     VERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRL
                     YNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGG
                     LLCLADPRYRRRKPLPEAG"
     gene            complement(4468..4947)
                     /gene="ccmE"
                     /locus_tag="OQP62_003690"
     CDS             complement(4468..4947)
                     /gene="ccmE"
                     /locus_tag="OQP62_003690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HCS1723122.1"
                     /translation="MNLRRKNRLWVVCAVLAGLALTTALVLYALRANIDLFYTPGEIL
                     YGKRETQQLPAVGQRLRVGGMVMPGSVRRDPDSLKVNFSLYDAEGSVTVSYEGILPDL
                     FREGQGVVVQGTLEKGNHVLAHEVLAKHDENYTPPEVEKAMQENHRRPQRADKDTSS"
     gene            complement(4944..5156)
                     /gene="ccmD"
                     /locus_tag="OQP62_003691"
     CDS             complement(4944..5156)
                     /gene="ccmD"
                     /locus_tag="OQP62_003691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HCS1723123.1"
                     /translation="MSPAFSSWSDFFAMGGYAFFVWLAVAMTVAPLALLALHTVLQRR
                     AILRGVAQQRAREARMRAAQAQQEAA"
     gene            complement(5153..5890)
                     /locus_tag="OQP62_003692"
     CDS             complement(5153..5890)
                     /locus_tag="OQP62_003692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease"
                     /protein_id="HCS1723124.1"
                     /translation="MWKTLHQLAAPPRLYQIYGRLVPWLAAAGIIVLATGWVRGFGFA
                     PADYQQGESYRIMYLHVPAAIWSMGIYAAMAVAAFTGLVWQMKMASLAVAAMAPVGAV
                     YTFIALVTGAAWGKPMWGTWWVWDARLTSELVLLFLYAGVIALWHAFDDRKMAGRAAG
                     ILVLVGVVNLPVIHYSVEWWNTLHQGSTRMQLSIDPAMRSPLRWAIAGFLLLFMTLAL
                     MRMRNLILLMEKRRPWVSELILKRGHR"
     gene            complement(5942..6601)
                     /gene="ccmB"
                     /locus_tag="OQP62_003693"
     CDS             complement(5942..6601)
                     /gene="ccmB"
                     /locus_tag="OQP62_003693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HCS1723125.1"
                     /translation="MMWRVFCLELRVAFRHGADIAGPLWFFLMVITLFPLSVGPQPQL
                     LARIAPGIIQVAALLASLLALERLFRDDLQDGSLEQLMLLPVPLPAVVLAKVLAHWAV
                     TGLPLMMLSPLVALLLGMDVYGWKIMALTLLLGTPALGFLAAPGVGLTAGLRRGGVLL
                     GILVLPLSVPVLIFATAAMDAASMHLPVDGYLAVLGALLAGSATLSPFATAAALRIST
                     Q"
     gene            complement(6598..>7194)
                     /gene="ccmA"
                     /locus_tag="OQP62_003694"
     CDS             complement(6598..>7194)
                     /gene="ccmA"
                     /locus_tag="OQP62_003694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HCS1723126.1"
                     /translation="YCERDERTLFRGLSFTVEAGEWVQVTGGNGAGKTTLLRLLTGLA
                     RPDGGEVYWQGEPLRRVRDSFHRSLLWIGHQPGIKTRLTARENLHFFHPGDGARLPEA
                     LAQAGLAGFEDVPVAQLSAGQQRRVALARLWLTRAALWVLDEPFTAIDVNGVARLTRR
                     MAAHTAQGGMVILTTHQPLPGAADTVRRLALTGGGAGL"
BASE COUNT         1364 a         2568 c         2147 g         1115 t
ORIGIN      
        1 ccacacttct gttatgtcac attgtccgaa aaaagcgtcc agaccagtat tcaacttcag
       61 ggagtattct gttttctctc acaacaggtt gttttatcct ttctatcgtt cagctaatga
      121 ctcgcctgtc acaggtttta ctacttaccc atgcactaat taaggtaaaa tttacgcgct
      181 tgacaatgtg gcaaatctgg acgatttccg cgctgaaaac aataatcatt ctaataaaac
      241 tcaggagata tagcatgcct gaagtaacac cttttcaggt gcttattgtg gacgaccatc
      301 cacttatgcg gcgaggtatt cgtcaattac tggaactgga cccggctttt tatgtcgttg
      361 ccgaagcggg tgacggggcg agtgcgatcg atctggcgaa tcgcattgag cccgatctga
      421 tcctgctgga tctgaatatg aaaggtctga gcgggttaga taccctgaac gcgctacgcc
      481 gggatggtgt gacggcgcaa attattattc ttaccgtctc ggattccgcc agcgacatct
      541 acgcgctgat cgacgccggc gccgacggtt atctgctcaa agatagcgat ccggaagtgc
      601 tgctggaggc cattcgcaaa ggcgctaacg gcggtaaagt ctttagcgat cgggtcaatg
      661 aatatctgcg tgagcgtgaa cggtttggcg cgcaggaaga tccctttagt atcctgaccg
      721 aacgagagtt agatgtcttg catgagctgg cgcaggggct ttctaacaaa cagattgcgt
      781 cagtactgaa tatttctgag cagacggtta aggtgcacat tcgtaatcta cttcgcaagc
      841 taaacgtgcg ctcgcgcgtc gcggcgacca ttctattttt acaaacacgc ggaatgcagt
      901 aacaagccag gcccggtggc gccacgccac cgggccgtca gggtcttatt tctcctgcgc
      961 cagccggata ctgcgctcta tcaccgcccg ccgggcgtca cccgccggca gcagcttcag
     1021 catcatctcc caggccgcca ccgcctcgcc aaagcgctgc tgctcaaagg cgctgaacgc
     1081 atacaggctt aacacccgga tatccgtgtg gtcgcggctc accagctgac gcagcagttc
     1141 cccgccgcgg cggttatcct ccgggtcgga cgagcgcgtc agcgcctccg cgtagcccag
     1201 cgccgcatcg cggttttccg ggtccagacg gtaagcgttc gcatacgccc cggtggcggt
     1261 accggcatta cccagtacca taccggtgcg ccccagcatg agccagccct caacattgcc
     1321 ggcatcattc tgcaggcggg tgcgcagccc cagcgccagc cgcgccatct cctcctcatt
     1381 cagcggctgc gcctgcgggt ccagcgcccg cgccagcagc ccgggcgtct gcgccgttgc
     1441 ctgctgccag gccctcacct gcggatagct gccggtcagg gcgtagctgc cggcgccgac
     1501 cgccagcgca atgacggccc ccggcacgta aacgccccac ccggcgcgcg cgccgcaaac
     1561 cggggtgtcc gccggcagcg gctcccggcg caggcgcacc cgccggcgcg tccgggcgac
     1621 gattatccac ccgcccgcca cgatggcggc cagcggcagc acccacagca gcaccgtcag
     1681 cggggtcagc ggcgggtcgt aggtgacgaa gttgccgtag cgcgccacca tgtaatcgat
     1741 gatttcctgg cggctcttcc cctcctgcat caggtcatac accctgcggc gcatgtcggt
     1801 ggctatcatc gcgttcgagt ccgcaatgct gttgttctgg catttcgggc agcgcagctg
     1861 ctccgtgagc tggcggaact gctgctcctg cgcttcatct ttaaacggca tcacgtcggt
     1921 ggtcgcccgc gctgacccgg agataaccag cgccagcatc agcatcacca tgcccggtaa
     1981 cagtctcatt gcgccgcctc ccggctgtat ctgtcccaca gcggtttcag ttcactttcc
     2041 catacccggg cattcaaatc gcccgcatgg cggtagcgga taatccccct gccgtcgatg
     2101 aggaaggttt ccggcgcgcc gtacacgccc aggtccagcc ccagcatccc gtcgctgtcc
     2161 gataaactca gcgcatacgg gttgcccagt tcctttaacc aggccaccgc cttcgcccgg
     2221 tcgtccttat agttcagccc caccacccgg ataccctgcg cggccagccg gttcaggtac
     2281 tgatgctcgg cgcggcaggt cgggcaccag gtggcccaga cgttaagcag caccggtttc
     2341 ccctgcgtca gcacctccgc ctgatagtac tgacccggcg tctccagcga ttccaggcga
     2401 aacgccggca ccggctttcc ggtcagcgcc gattcgagat tcgtcgggtc atccccctgc
     2461 gcgttgcgcg ccagctgcca cagcagcgcc gcggcaatca gcagaaaaat cagcagcggt
     2521 aataacagta cgttgcgttt catccggcct ccggcaatgg tttacggcgg cggtagcgcg
     2581 ggtccgccag gcacagcagc ccgcccagcg ccatcagcag ccccccggcc catatccagc
     2641 ggacaaacgg tttgtagtac aggcgcacgg cccacgcgcc gttgtccagc tcctccccga
     2701 gcgcggcgta caggtcgcgg gtcagcccgc cgtcaatcgc cgcctcggtc atcaccatcc
     2761 ggctggtgtt gtagagccgt ttctccgcgt gcagcaccgc ctccggctcg ccgtggcgcg
     2821 tcaccccgat gagggccacc ccgccgcggt agttgggccc ggtgatgtcc cgcacctccc
     2881 ggaaggtgaa gcggtagtcg tgaatggtca cgctgtcgcc cgcccgcatc cgcacgtcac
     2941 gctccacgct gtaattctgg ctgaaggcga taccggtaat cgtcaccgcc agcccgaggt
     3001 gcgccgccac cattccccag tagctgagag aggttttcgt gccgcgggac acgcgctgta
     3061 cggcttcggc caccgccagc accgcaatcc agcaggccat cgccatcccc accgccgtca
     3121 tggcgatgat tctatcttcc agcagccatg gcaaaagtac cgacagcacc agggtggaga
     3181 ccagggcggt gagcagcagt ttcctgatgt tacgcggccg gtcccggccc cagcgcacca
     3241 gtggccccac ccccagcagc agggcaaagg ggaccatcag ccaggtgaac atggtgttaa
     3301 agaacggctc ccccaccgaa atgctgccca gccccagctg tttgtgcacc agcggcagca
     3361 gggtacccag cagcaccacc agcatggcgg ccatcagcag gacgttgttg ccgagcagca
     3421 gcgactcacg cgaccacagc gcgttgttca cccgcgaacg caccctgtgc ccgcgcacgg
     3481 cgaacagcag cagcgagccg ccggtgacca gcaccataaa ggcgaggata aacattccgc
     3541 gcgccgggtc ggaggcgaag gcgtgcaccg acaccagcac cccggagcgc accaggaagg
     3601 tgcccagcag gcacagcgag aaggcgcaga tggacaacag cagcgtccac gccttaaagc
     3661 cggcgcgctg ttcggtgacc gccagcgagt gcagcagggc ggtgcccgcc agccacggca
     3721 taaaggaggc gttctccacc gggtcccaga accaccagcc gccccagccc agctcgtagt
     3781 aggcccacgc cgagccgagc acgatgccca gcgtcaggaa cacccacgcc gccagcgtcc
     3841 acgggcgggc aaaacgggtg aacgcgctgt ccagacgccc gctcagcagc gcggcgatgg
     3901 cgaaggcgaa ggccaccgag aagccgacat agcccatgta cagcagcggc gggtggaaaa
     3961 tcagccccgg gtcctgcagc agcgggttca ggtcgcgccc ctccaccgga aaggccggca
     4021 gcgtgcgggc aaacgggccg gaggtgaaca ggatgaacgc cagaaaaccg gcgcagacca
     4081 tccccatcac cgccagcacc cgggcgacga tatccgccgg cacctgccgg ctgaacaccg
     4141 ccaccgccag ggtccagccg ctcatcagca gcacccacag cagcagcgag ccctcgtgcg
     4201 ccccccaggt ggcggccacc cggtaccaca ccggcagctg cgtgttcgag ttgccggcga
     4261 cataggccac ggtgaagtcg ttaaccacaa aggcgtgcac cagcacgaaa aacgcgcccg
     4321 ccacgcagat gaacagcagc caggcgaaca ccccggccga cgccatcatc cgcgcgtcgc
     4381 cgcgcgccac gccccacagc gggtaaacgg acagcagcag cgccacgccg agcgccaggc
     4441 acagcagtgc gtggccgtat tcaggcatca tgatgaagtg tccttatcag cgcgttgcgg
     4501 gcggcggtgg ttttcctgca tcgccttttc cacttccggc ggggtgtagt tctcgtcatg
     4561 cttggccagc acctcgtgcg ccaggacgtg gttgcccttc tccagggtgc cctgcaccac
     4621 caccccctgc ccctcgcgga acaggtccgg cagtatcccc tcatagctca ccgtcaccga
     4681 cccttcggcg tcgtagaggc tgaagttcac cttcagcgag tccgggtcgc gcctgacgct
     4741 gccgggcatc accatcccgc cgacgcgcag gcgctggccc accgccggca gctgctgcgt
     4801 ctcgcgcttg ccgtagagga tttcgccggg ggtatagaac aggtcgatat tcgcgcgcag
     4861 cgcgtacagg accagggcgg tggtcagcgc caggcccgcc agcaccgcgc agaccaccca
     4921 tagccggttt ttacgtcgca ggttcacgcg gcctcctgtt gcgcctgtgc ggcacgcatc
     4981 cgcgcctcgc gcgcccgctg ctgcgccacg ccgcgcagaa tggcccggcg ctgcagcacc
     5041 gtgtgcagcg ccagcagcgc cagcggcgcc acggtcatcg ccaccgccag ccagacaaaa
     5101 aaggcgtacc cgcccatggc gaaaaaatcg ctccacgatg aaaatgccgg actcaccggt
     5161 gccccctttt cagtatcagt tcgctcaccc acgggcggcg tttttccatc agtaaaatca
     5221 ggttgcgcat ccgcatcagc gccagcgtca taaagagcag caggaagccg gcgatggccc
     5281 agcgcagcgg cgagcgcatc gccgggtcga tactcagctg catccgcgtc gagccctggt
     5341 gcagggtgtt ccaccactcg acggaatagt ggataaccgg caggttcacc acgccgacca
     5401 gcaccagaat gcccgccgcg cgcccggcca ttttacggtc gtcaaaggcg tgccacaggg
     5461 cgatgacccc ggcatagaga aacagcagca ccagctccga ggtcaggcgc gcgtcccaca
     5521 cccaccaggt gccccacatc ggtttgcccc acgccgcgcc ggtgaccagc gcgatgaagg
     5581 tgtacaccgc ccccaccggc gccatcgccg cgacggcaag gctggccatt ttcatctgcc
     5641 agaccagccc ggtgaacgcc gccaccgcca tcgccgcata gatacccatc gaccagatgg
     5701 ccgccgggac atgcaggtac ataatgcggt agctctcccc ctgctggtag tccgccgggg
     5761 cgaaaccaaa gccccggacc cagcccgtgg ccagcacaat gatgccggct gccgccagcc
     5821 acggcacaag cctgccgtaa atctgataca gccggggcgg cgccgccagc tgatgaaggg
     5881 ttttccacat agtcgtcacc tgacctcctg aaaccagtaa aatgtccgtc gtgccggggc
     5941 gctactgcgt actgatgcgc agcgccgccg cggtggcgaa cgggcttaac gtcgcgctgc
     6001 ccgccagcag cgcccccagc accgccagat agccgtcaac gggtaaatgc atcgatgccg
     6061 cgtccatcgc cgcggtggcg aaaatcagca ccgggacact cagcggcagc accagaatgc
     6121 ccagcaggac gccgccgcgc cgcaggccgg ccgtcagccc gacgcccggc gcggcgagaa
     6181 accccagcgc cggcgtgccg agcagcagcg tcagcgccat gattttccag ccgtacacgt
     6241 ccatccccag cagcagcgcc accagcgggg agagcatcat cagcggcagg ccggtcaccg
     6301 cccagtgggc cagcaccttc gccagcacca ccgccggcag cggcaccggc agcagcatca
     6361 gctgctccag gctgccgtcc tgcaggtcgt cgcgaaacag ccgctccagc gccagcagcg
     6421 aggccagcag cgccgccacc tggatgatgc ccggcgcgat acgcgccagc agctgcggct
     6481 gcggcccgac gcttaacgga aacagggtga tgaccatcag gaagaaccac agcgggccgg
     6541 cgatgtccgc gccgtggcgg aacgccacgc gcagctcgag acagaagaca cgccacatca
     6601 cagcccggcc cccccgccgg tcagcgccag gcggcggacg gtgtccgcgg cccccggcag
     6661 cggctggtgg gtggtgagga tgaccatccc gccctgcgcc gtgtgcgccg ccatccgccg
     6721 ggtgaggcgc gccacgccgt taacgtcaat ggcggtgaac ggctcgtcga gcacccacag
     6781 cgcggcgcgg gtcagccaca ggcgggccag cgccacccgg cgctgctgcc cggccgagag
     6841 ctgagcgacc ggcacgtcct caaatcccgc cagcccggcc tgcgccagcg cctccgggag
     6901 acgcgcgccg tcaccggggt ggaaaaagtg caggttctcc cgcgccgtca ggcgggtttt
     6961 tatccccggc tggtgcccta tccacagcag gctgcgatgg aagctgtcgc gcacgcggcg
     7021 caggggctcg ccctgccagt acacctcccc gccgtccggg cgcgccagcc cggtcagcag
     7081 gcgcagcagg gtggtttttc cggcgccgtt gccgccggtg acctgcaccc actccccggc
     7141 ctccacggtg aacgacagcc cgcgaaacag cgtcctctcg tcccgctcgc agta
//
LOCUS       DAJVSD010000226         7177 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.226, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000226 DAJVSD010000000
VERSION     DAJVSD010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7177)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7177)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7177
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.226"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(124..3237)
                     /gene="acrD"
                     /locus_tag="OQP62_003695"
     CDS             complement(124..3237)
                     /gene="acrD"
                     /locus_tag="OQP62_003695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease AcrD"
                     /protein_id="HCS1723127.1"
                     /translation="MANFFIDRPIFAWVLAILLCLTGALAIFSLPVEQYPDLAPPNVR
                     ITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDE
                     AVQQVQNQLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVAS
                     NIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQ
                     LGGTPSVDKQALNATINAQSLLQTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKYD
                     YLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVK
                     ASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINT
                     LTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLS
                     AVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQ
                     RGFFGWFNRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQE
                     DRGMFTTSIQLPSGSTQQQTLKVVEKVENYYFTHEKNNIMSVFSTVGSGPGGNGQNVA
                     RMFVRLKDWDARDPTTGSSFAIIERATKAFNQIKEARVFASSPPAISGLGSSAGFDME
                     LQDHAGAGHDALMAARDQLIELAGKNSSLTRVRHNGLDDSPQLQIDIDQRKAQALGVS
                     IDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAKYRMLPDDINLWYVRNKDGGMVP
                     FSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMDVMESLVHQLPGGFGLE
                     WTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLAT
                     WMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHALLDATLYASRQRLRPI
                     LMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRF
                     PLKPRPE"
     gene            complement(3422..5122)
                     /gene="narQ"
                     /locus_tag="OQP62_003696"
     CDS             complement(3422..5122)
                     /gene="narQ"
                     /locus_tag="OQP62_003696"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarQ"
                     /protein_id="HCS1723128.1"
                     /translation="MTVKRPVSASLAKAFFYIVLLSILSTGSALLTLTSSLRDAEAIN
                     IAGSLRMQSYRLGYDLQSRSPQINAHRQLFQHALNSPVLQNLNAWYVPQAVKTRYARL
                     HANWLEMNSRLQDGDIVWYQSNINNYVDQIDLFVLALQHYAERKVMLVVAISLAGGIG
                     IFTLVFFTLRRIRQQVVRPLNQLVTASQRIEHGQFAPLPLDTSLPNELGLLAKTFSQM
                     SSELHKLYRSLEASVEEKTHDLHEAHRRLEVLYQCSQALNTSQIDVHCFRHILQIVRE
                     HDAAWYLELTVGDNWRISEGTQSPDLPMQMLPVTMQDTVYGELHWQSPNVNASTPLLN
                     SVSTMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRAIP
                     EDNAGAQSIMADFSRALNDAYRQLRELLTTFRLTLQQADLPSALHEMLEDLQSQTPAK
                     LKLDCRLPTLALDAQMQVHLLQIVREAVLNAIKHANASEIAVSCVTAPDGDHTVYIRD
                     NGIGIGEPHEPAGHYGLNIMRERAERLGGTLNFSQPSGGGTLVSISFRSSNKEESQLT
                     "
     gene            5308..7167
                     /locus_tag="OQP62_003697"
     CDS             5308..7167
                     /locus_tag="OQP62_003697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase FeS-binding subunit"
                     /protein_id="HCS1723129.1"
                     /translation="MNRFIMANSQQCLGCHACEVACVMAHNDERHVLTPQRYQPRITV
                     IKHQRQRSAVTCHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTM
                     QMVLTPVAPNQFKASAHKCDLCQGREQGPACVENCPADALQLVTEDSLTRLAKTRRLR
                     TARQEIRPWHTVDTQHSGTACSKVERMQATPPRGEPDKLAIEARKTTFEEIYLPFRAA
                     QAEREAARCLTCGEHSICEWTCPLHNHIPQWIELVKAGDIDAAVELSHQTNCLPEITG
                     RVCPQDRLCEGACTLRDEYGAVTIGNIERYISDRALSKGWRPDLSDVQKSDKRVAIIG
                     AGPAGLACADVLARRREIFSAMGIRFELNCEVGKDISLETLLESYDAVFVGVGTYRSM
                     KADLPNEDAPGVYDALPFLIANTKQVMGLPALPDEPFIDTAGLNVVVLGGGDTAMDCV
                     RTALRHGAANVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVELVLDTHGRASG
                     IRFLRTRLGEPDGQGRRRPVPVPDSEFVMPADAVIMAFGFHPHGMSWLESHGVKVDNW
                     GRIAASVESEFRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGILDWLAK"
BASE COUNT         1644 a         1946 c         2021 g         1566 t
ORIGIN      
        1 cgaagtcatg cttcgtaaat aaatgcctgg aaggcaccgc gctcccatag gggataagaa
       61 aaggcgactc aacgaaagtc gccttttttg tgcccgacac ctcgtatcag gctggccagg
      121 agcttattcc gggcgcggct tcagcgggaa gcggcgacgt atcagcacga aaaacagggg
      181 tacaaagaag atagccagaa tggttgctga gatcattccc cccatcacgc cggttccgac
      241 agcatgttgg ctacccgagc ctgccccggt gctggtggcc atcggcaata cgccaaagat
      301 aaacgccagc gaagtcatca gtatcggtcg caggcgctgg cggctggcgt acagcgtggc
      361 gtctaacagc gcgtgtccct tctgattcat ttcgttggcg aattccacaa tcagaatcgc
      421 gtttttcgcc gagaggccga taacggtcaa cagccccacc tggaagtaaa catcgttttc
      481 cagcccgcgc atccaggtgg cgagtaacgc gccgatgacc ccgagcggca caaccagcat
      541 caccgagaag ggcaccgacc agctttcata caatgccgcc agacacagga agacgactaa
      601 tagcgaaata gcgtacagcg caggcgcctg cgcgccggag agccgttcct ggtaagacat
      661 ggctgtccat tccaggccaa aaccgcccgg tagctgatgc accaacgact ccatgacatc
      721 catcgccgtc ccggtactga cccccggcgc ggcctctccg acaatttcta ccgccgaata
      781 gccgttatag cgttccagac gcggcgatcc ggtttcccag cgcgaggtgg cgaaggcgga
      841 gaaggggacc atgccgccgt ctttgttacg gacataccaa agattaatat cgtccggcaa
      901 catacgatat ttcgctgcgg cctgaacata gaccttcttc acgcggcccc ggtccataaa
      961 gtcgttgacg tagctcgatc cccaggctgt ttgcagggtg tcgttgatat cgtcaatcga
     1021 tacgcccagc gcctgcgctt tccgttggtc aatatcaatt tgcagttgcg ggctgtcgtc
     1081 caggccgttg tggcgcacgc gggtcaagga actgtttttc ccggccagct caatgagttg
     1141 atctcgtgcg gccatcagcg cgtcatggcc tgctccggcg tgatcctgta attccatatc
     1201 aaaaccggcg gagctgccca gaccgctaat tgccggcggg ctgctggcga agacgcgagc
     1261 ttctttaatc tggttaaatg cttttgtcgc ccgctcaata atggcgaacg aggagccggt
     1321 ggtgggatcg cgcgcgtccc agtctttcaa gcgaacaaac atacgcgcga cgttttgccc
     1381 gttcccgcca gggccggaac cgaccgtcga gaagaccgac ataatgttgt ttttctcatg
     1441 ggtgaagtaa tagttttcaa ccttttcaac gactttcagg gtctgctgtt gcgtagagcc
     1501 gctcggtagc tggatagacg tagtgaacat gccccgatct tcttgcggca gaaaggaggt
     1561 ggggagacgc aaaaacagga acaccatgcc gccaagcaac agaacataaa tcagaatcca
     1621 gcgcaggctg cgatgcaaaa ttttcgctac gcctttctca taacgttcgg cattacgatt
     1681 gaaggtacgg ttaaaccagc cgaaaaatcc gcgttgcccg tgctgttcgc ctttgtgcag
     1741 cggttttaat aacgttgcgc acagcgccgg cgtcaggatc atggcgacca gcaccgacag
     1801 caccattgcc gagacaatgg tgatagaaaa ctgacgataa atcgccccgg tggtaccgcc
     1861 aaagaacgcc atcggtacga ataccgcaga cagcaccatc gcgataccga ccagcgcccc
     1921 ctggatttgt cccatggatt tgcgcgtcgc ttcacgcggc gtgagccctt cttcgctcat
     1981 gatacgttcg acgttttcca ccaccacgat ggcatcgtcg accaggagcc cgatcgccag
     2041 caccatcgcg aacatggtta atgtgttaat actgtagccg aacgcgtaaa gcacggagaa
     2101 ggtgcccatt aatactactg gcacggcgat cgtcggaatg agcgtggcgc gaaagttttg
     2161 caggaacaga tacatcacca ggaaaaccag cgcgatagct tccagcaacg ttttgaccac
     2221 atcgataatc gaggctttga caaaggaggt ggtttcatac gcgatcttgt attccaggcc
     2281 gtgagggaag tactgcgcca gctcgttgag gcgatccagt accagcttcg cggtcgccat
     2341 ttcgttcgcg ccggaggcca gcttaacgcc aaggccggaa gccggattgc cgttaaaacg
     2401 gctgaggtag tcatattttt ccgcccccag ctccacggtg gcgacatcgc ccagtttgac
     2461 ctcggaaccg tcctgattaa cgcgcagggt gatatcgcga aattgttgcg gcgtttgcag
     2521 cagcgactgc gcattgatgg tggcgttcag cgcctgcttg tcgaccgaag gcgtaccgcc
     2581 aagctgcccg acggcgattt gcgcattctg cgactcaatc gcatcggtca cgtctttcgt
     2641 ggtcatctga aaactattca atttggccgg atcgagccag atacgcatag agtactgtga
     2701 accataagcg tcaatatcgc ccacgccgtt gacgcggctg agcgggtcct gaatattact
     2761 ggcgacgtag tcggcgatat cctgcttgtc catagaaccg tcggtagaga cgaaagcgat
     2821 ggtcaaaata ttggtatcgc ccgttttgcg taccgtgacg ccttgatcct gtaccgcctg
     2881 cggcagttta cgcatcgcgg actgtaactg gttttgcacc tgctgaaccg cctcatcagg
     2941 atcggttccc gcaatgaagc tcagcgtaat ggtcgcctgt ccggttccgc tgctttgtga
     3001 tgacatgtac atcagattat cgaggcccgt catattctgc tcaataacct gggttacggt
     3061 attttccagc gtttgcgccg acgctcccgg ataattcgcg gtaatacgta cgttgggcgg
     3121 cgccagatcg ggatattgtt caacaggtaa agaaaaaatg gctaacgccc ctgtcagaca
     3181 caacaggata gccagcaccc aggcaaaaat ggggcgatcg ataaaaaaat tcgccattaa
     3241 aggggaacct cgtgtttcta catatcgtta tagatttgaa ctgcttcact gtagcggcaa
     3301 gctacgagcc aaacgtggag aaataaagga gataatgtaa attatcatgc gcttttacag
     3361 catacttttt gtgccaacgc cggaaagcct gacatctggc cttccggtga tttgccgttc
     3421 tttacgttaa ctgactctct tccttgttgg aggagcgaaa actgatactg accagcgtgc
     3481 cgccgccgga gggttgcgaa aaattcagcg tgccgccaag ccgttccgcg cgctcacgca
     3541 ttatattcag accatagtgt ccggcaggct catgcggttc gccgatacca atgccattat
     3601 cgcgaatata aacggtatga tcgccgtcag gcgcggtgac gcagctcacg gcgatttcgc
     3661 tcgcgttggc gtgtttaatg gcgttcagga cagcttcacg cacaatttgc aataaatgca
     3721 cctgcatttg cgcatccagc gccagcgtgg gtaaacggca atccaacttg agtttagccg
     3781 gagtctgact ctgtaaatct tccagcatct catgcaatgc ggagggtaaa tcggcctgct
     3841 gtaacgtcag acggaacgtg gtgagtagct cgcgaagctg acggtaggcg tcgttcagcg
     3901 ctctggaaaa atccgccatg atgctttgcg cgccggcgtt atcttctgga atggcgcgct
     3961 tcaaaagcgt taattgaata cgtaaataag aaagtacctg cgccagcgaa tcgtgtaact
     4021 cacgggcaat cgtcgcgcgc tcttccatta acaaaagttg ctggaagtgt ttttgcgcct
     4081 gattaaagta caaaccacgc cccagcatcg tggagacgct gttcagcaac ggcgtagagg
     4141 cattaacgtt ggggctttgc cagtggagtt cgccatagac cgtgtcctgc atcgtcactg
     4201 gcagcatttg catcggcagg tcggggcttt gcgtgccttc gctaatccgc cagttatcgc
     4261 ccacggttaa ctccagatac caggcggcgt catgttcacg gacaatttgc aaaatatggc
     4321 gaaaacagtg gacatcgatt tggctggtat tcagcgcctg ggagcactgg tataacacct
     4381 ccaggcggcg gtgcgcttcg tgcagatcgt gcgttttttc ttccaccgag gcttccagcg
     4441 aacgataaag tttatgcagc tcgctcgaca tctgactaaa cgttttcgcc aacaatccca
     4501 gctcattggg taagctggta tccagcggca gcggggcgaa ctgaccatgt tcaattcgct
     4561 gactggcggt gaccagttga ttcagcgggc gaacgacctg ctggcgaata cgccgtaggg
     4621 taaaaaagac cagcgtaaat atgccgatac cgcccgccag cgatatggcg acgaccagca
     4681 tgactttacg ctcggcgtaa tgctgtaacg ccagaacgaa gagatcaatt tgatcgacgt
     4741 aattgttgat attggactga taccagacaa tgtcgccatc ctgtaggcgg ctattcatct
     4801 ccagccagtt ggcgtgcagg cgcgcgtagc gagttttcac cgcctgcggc acataccagg
     4861 cgttgagatt ttgcagtacc ggcgagttga gcgcgtgctg gaaaagttga cgatgcgcat
     4921 taatctgcgg gctacggctt tgcagatcgt aacccagccg atagctctgc attcgtagcg
     4981 aaccggcgat attgatcgct tcggcatccc gtaaactgct ggtcagcgtc agtaatgcgc
     5041 tgccggtgga cagaatagac aacagcacaa tatagaaaaa agccttagcc agactggccg
     5101 agaccgggcg tttaaccgtc acactggtac tccccgcatt tagctgaacc gcaatttcat
     5161 ttgctttgaa ataaattgat ctgccacagg ttctggacag atagttgtgc ttcctgggca
     5221 gatgaacatt gccgaccccg ccttcgtcag ttaataacaa tgctcatata aagaataagg
     5281 tttttgcaac caaaacagaa ggacgccatg aatcgtttta ttatggccaa tagccagcag
     5341 tgtctgggat gccatgcctg cgaggtcgcc tgcgtaatgg ctcacaatga tgagcgacat
     5401 gttctgacgc cacagcgcta tcagccccga attactgtca tcaaacatca gcgccagcgc
     5461 agcgcggtta catgtcacca ttgcgaagat gcgccctgcg cccgtagctg tccgaacggc
     5521 gcgatcgcgc atattaacga cagcgtgcag gtcaatgcgc agaagtgcat cggctgtaag
     5581 tcctgcgtcg tcgcctgccc attcggcacc atgcagatgg tattgacgcc cgtcgcgcca
     5641 aaccagttca aagccagcgc gcataaatgc gatctgtgtc agggacgtga acagggtccg
     5701 gcctgtgtgg aaaattgccc ggcggatgcg ctgcaactgg tcaccgaaga ctcgttgacc
     5761 cgtctggcta aaacgcgacg gctgcgtacc gcccggcagg agattcgccc ctggcatacc
     5821 gtggatacac aacacagtgg gacagcatgc agcaaagtcg agcgtatgca ggcgacgccg
     5881 ccgcgcggcg aaccggataa actggcgatt gaagcgcgta aaaccacctt tgaggaaatt
     5941 tatctgccgt ttcgcgccgc gcaggcggag cgtgaagcgg cccgctgcct cacatgcggg
     6001 gaacacagta tctgcgaatg gacctgtccg ctgcataacc atattcccca gtggatcgaa
     6061 ctggtgaaag ccggcgatat tgatgcggcg gtagagcttt cccaccagac caactgtctg
     6121 ccggaaatta ccgggcgcgt ctgtccgcag gatcggctat gcgaaggcgc gtgtacactc
     6181 cgcgatgagt atggcgcggt taccatcggc aacattgagc gctatatctc cgatcgcgct
     6241 ctgagcaaag gctggcgtcc cgacctgtcg gacgtacaga agagcgataa gcgcgtggcg
     6301 attatcggcg cggggccggc aggtcttgcc tgcgctgacg tgctggcgcg ccgtcgggaa
     6361 atcttcagcg cgatggggat tcgtttcgaa cttaactgcg aagtagggaa agatatttct
     6421 ctggagacgc tgctggagag ttatgacgcc gtctttgtcg gggtaggaac ctatcgttcc
     6481 atgaaggctg atttaccgaa tgaagacgcg ccgggggtat atgatgcgtt gccattcctc
     6541 atcgccaata ccaaacaggt gatggggctt ccggcgttgc ctgacgagcc gtttattgat
     6601 actgcgggcc ttaacgtggt tgtgctgggc ggcggtgaca ccgcaatgga ctgcgtacgt
     6661 acggcgttgc gtcatggcgc tgccaacgtc acctgcgctt atcgccgcga tgaggccaat
     6721 atgccagggt cgaaaaaaga ggtgaaaaac gcgcgggaag agggcgcgaa ctttgaattt
     6781 aacgttcagc cagttgagtt ggtgctggat acgcacgggc gcgccagcgg tattcgcttt
     6841 ttgcgtacgc ggcttggcga accggatggt caggggcgac gccgtccggt acctgtaccg
     6901 gacagcgagt tcgtgatgcc ggcggatgcg gtcattatgg cgtttggttt tcatccgcat
     6961 ggtatgtcgt ggctggaatc gcatggcgtg aaggtggata actggggacg tattgccgcc
     7021 agcgtcgaga gcgagtttcg ttaccagacg tccaacccga aaattttcgc tggcggcgat
     7081 gcggtgcgcg gcgccgatct ggtggtgacg gcgatggcag aaggccgaca tgccgcgcag
     7141 gggatactcg actggttagc taaataagcg tatttgt
//
LOCUS       DAJVSD010000227         7160 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.227, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000227 DAJVSD010000000
VERSION     DAJVSD010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7160
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.227"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            122..697
                     /locus_tag="OQP62_003698"
                     /pseudo
     CDS             122..697
                     /locus_tag="OQP62_003698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461698.1"
                     /note="structural flagella protein; individual Salmonella
                     serotypes usually alternate between the production of 2
                     antigenic forms of flagella, termed phase 1 and phase 2,
                     each specified by separate structural genes; incomplete;
                     partial in the middle of a contig; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin FliC"
     gene            776..1980
                     /gene="fliB"
                     /locus_tag="OQP62_003699"
                     /pseudo
     CDS             776..1980
                     /gene="fliB"
                     /locus_tag="OQP62_003699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460911.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin lysine-N-methylase"
     gene            2177..2896
                     /locus_tag="OQP62_003700"
     CDS             2177..2896
                     /locus_tag="OQP62_003700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HCS1723130.1"
                     /translation="MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDL
                     LQAGGIGLLNAVDRYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQ
                     AMGQLEQELGRNATETEVAERLGIPVAEYRQMLLDTNNSQLFSYDEWREEHGDSIELV
                     TEEHQQENPLHQLLEGDLRQRVMDAIESLPEREQLVLTLYYQEELNLKEIGAVLEVGE
                     SRVSQLHSQAIKRLRTKLGKL"
     gene            2955..3506
                     /gene="fliZ"
                     /locus_tag="OQP62_003701"
     CDS             2955..3506
                     /gene="fliZ"
                     /locus_tag="OQP62_003701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulatory protein FliZ"
                     /protein_id="HCS1723131.1"
                     /translation="MTVQQPKRRPLSRYLKDFKHSQTHCAHCHKLLDRITLVRRGKIV
                     NKIAISQLDMLLDDAAWQREQKEWVALCRFCGDLHCKKQSDFFDIIGFKQYLFEQTEM
                     SHGTVREYVVRLRRLGNYLSEQNISHDLLQDGFLDESLAPWLPETSTNNYRIALRKYQ
                     QYKAHQQIAPRQKSPFTASSDIY"
     gene            3653..4453
                     /gene="tcyJ"
                     /locus_tag="OQP62_003702"
     CDS             3653..4453
                     /gene="tcyJ"
                     /locus_tag="OQP62_003702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1723132.1"
                     /translation="MKLALLGRQALMGVMAVALVAGMSAKSFADEGLLNKVKERGTLL
                     VGLEGTYPPFSFQGDDGKLTGFEVDFAEALAKHLGVKASLKPTKWDGMLASLDSKRID
                     VVINQVTISDVRKKKYDFSTPYTVSGVQALVKKGNEGTIKTAADLQGKKVGVGLGTNY
                     EEWLRQHVQGVDIRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTKGTLAVTGDA
                     FSRQESGVALRKGNEDLLKAVDNAIAEMQKDGTLKALSEKWFGADVTQ"
     gene            4607..5593
                     /gene="dcyD"
                     /locus_tag="OQP62_003703"
     CDS             4607..5593
                     /gene="dcyD"
                     /locus_tag="OQP62_003703"
                     /EC_number="4.4.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-cysteine desulfhydrase"
                     /protein_id="HCS1723133.1"
                     /translation="MPLHHLTRFPRLELIGAPTPLEYLPRLSDYLGREIYIKRDDVTP
                     IAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENP
                     IGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGG
                     SSALGAMGYVESALEIVQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGV
                     TVSRSVAEQKPKVIALQQAIAGQLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLA
                     NLEGVLLDPVYTGKAMAGLIDGISQKRFNDDGPILFIHTGGAPALFAYHPHV"
     gene            5614..6282
                     /gene="tcyL"
                     /locus_tag="OQP62_003704"
     CDS             5614..6282
                     /gene="tcyL"
                     /locus_tag="OQP62_003704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter permease"
                     /protein_id="HCS1723134.1"
                     /translation="MQESIQLVIESLPYLLKGAVFTLQLSIGGMFFGLLLGFVLALMR
                     MSPLWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQFGIELDPIPAAMIGLSLNTAAY
                     TSETLRAAISAIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDT
                     SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQE
                     REPK"
     gene            6279..7031
                     /gene="yecC"
                     /locus_tag="OQP62_003705"
     CDS             6279..7031
                     /gene="yecC"
                     /locus_tag="OQP62_003705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine ABC transporter ATP-binding protein
                     YecC"
                     /protein_id="HCS1723135.1"
                     /translation="MSAIEVTNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTT
                     LLRCINLLEQPEAGTIKVGDIIIDTARPFSQQKGLIRQLRQHVGFVFQSFNLFPHRTV
                     LENIIEGPVIVKGEPKAEATALARELLAKVGLAGKETRYPRRLSGGQQQRVAIARALA
                     MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMGFARDVADRAIFMD
                     QGQIVEQGPAKTLFADPQHPRTRQFLEKFLVK"
BASE COUNT         1765 a         1733 c         1978 g         1684 t
ORIGIN      
        1 aacggccact ataacccaca accaaattgc tgaagtaaca aaagagggtg ttgatacgac
       61 cacagttgcg gctcaacttg ctgcagcagg ggttactggc gccgataagg acaatactag
      121 ccttgtaaaa ctatcgtttg aggataaaaa cggtaaggtt attgatggtg gctatgcagt
      181 gaaaatgggc gacgatttct atgccgctac atatgatgag aaaacaggtg caattactgc
      241 taaaaccact acttatacag atggtactgg cgttgctcaa actggagctg tgaaatttgg
      301 tggcgcaaat ggtaaatctg aagttgttac tgctaccgat ggtaagactt acttagcaag
      361 cgaccttgac aaacataact tcagaacagg cggtgagctt aaagaggtta atacagataa
      421 gactgaaaac ccactgcaga aaattgatgc tgccttggca caggttgata cacttcgttc
      481 tgacctgggt gcggttcaga accgtttcaa ctccgctatc accaacctgg gcaataccgt
      541 aaataacctg tcttctgccc gtagccgtat cgaagattcc gactacgcaa ccgaagtctc
      601 caacatgtct cgcgcgcaga ttctgcagca ggccggtacc tccgttctgg cgcaggcgaa
      661 ccaggttccg caaaacgtcc tctctttact gcgttaatcc ggcgattgat tcaccgacac
      721 gtggtacaca atcaaggcag cgaaagctgc cttttttaat tccggagcct gtgtaatgaa
      781 agaaatcacc gtcactgaac ctgcctttgt cacccgcttt tcctgttctg gctcggcctg
      841 tcgcgaccat tgttgtaagg gctggaaaat cacgctggat aagacgacgg ttaaaaagta
      901 tctcgccagt aaagacacga cgattcgtac catcgcgcaa gaccatatta ttctgctgaa
      961 aaagaacaat aatcattggg gggaaattaa actgccttcg gcgctgggaa gttgccctta
     1021 tctggatgag gaccgtttgt gccgggtaca aaaacgttag gcgcaaaggc attaagtcat
     1081 acctgttcct ctttcccacg ggcgcaccat acctataaaa atgaggtacg taactccctg
     1141 agtcttgcct gtccggaggt aacgtcccgc attttaaacg atcctgacgc aatggcgctc
     1201 ggcgaaaaaa caatcattca gcagacattc aatactgcgc cgttattctc accgcagcaa
     1261 aagttactca atctgttttg cctgagtctg atcaaccatg ccaacagcag tacggaaacg
     1321 gcgctctatg ggttgattaa attcgtcatg tatgcacata aatttgccaa aattgatgat
     1381 gccgcgctgg gtgaactgga acaggtgtat gccgcgttac ttgagcagtt gcagaccggc
     1441 gtgctggcgc aggaattgat gaatatcgcg ccggacagca aggtaaaaac ctcgctggta
     1501 ttgcagatgc agaactattt ccgctcgctc ccgcttagtc gtggcagtgt tatcctcgat
     1561 cactatatcc agtgtcttct gcgggtgctg acggcggaag agggcgtttc aatggagcag
     1621 aaggttagcg atattgagtc ctcattagcg cgctgtttac aggcggatga gcagcagaag
     1681 aactgggctt tcagaaattt aattctctat aaaatttggg aaaataattt ccccaaccag
     1741 ccgaatgtcg acccgttacg cgcgctgtat attatcgtgg cggaatatgc ctttattaag
     1801 ctattaacgg cagccagcgt gcatgagcgc gggcggcttg agtgggatga cgttaccaat
     1861 attgtgtata gctttcactc ccgcagccag cataacagcg aggtggcggc gaattttcat
     1921 cgccatatag aaacggtgcg tactggcgac gatctgtcga tgattcatct tctgacatag
     1981 ttttgttcgg ggtgggcttt tgcgcatccc gtttatccta tctggctgat tttattctgc
     2041 tctttgaacc gctaaaaagg cgctacaggt tacataagtg aaataaccct tcttttatag
     2101 ccttattcct tcgatagaac cctctgtaga aacggataat catgccgata actcatttaa
     2161 cgcagggctg tttatcgtga attcactgta taccgctgaa ggtgtaatgg ataaacactc
     2221 gctgtggcag cgttatgtac cgctggtgcg tcacgaagca ttgcgcctgc aggtgcgatt
     2281 gccggcgagc gtggaactgg acgatctgct acaagcgggc ggcatcgggt tattaaatgc
     2341 ggtcgaccga tatgacgctt tgcaaggaac ggcatttacc acttacgcag tgcagcgtat
     2401 tcgtggggcg atgctggatg aattacgcag ccgcgattgg gtgccgcgta gcgtccggcg
     2461 taatgcccgc gaagtggcgc aggcgatggg acaactggag caggaactgg ggcgtaatgc
     2521 gacggaaacc gaagtggcgg aacgtcttgg catccctgtt gcggagtatc gtcagatgtt
     2581 gctcgatacc aacaacagcc aacttttctc ttacgatgag tggcgggaag agcatggcga
     2641 tagcatcgaa ctggtgactg aagaacatca acaggaaaac ccgttacatc aactgctgga
     2701 gggcgacctg cgacagcggg taatggatgc gattgaatcg ctgccggaac gcgagcaact
     2761 ggtgttaacg ctgtattacc aggaagagct caatctcaaa gagattggcg cggtactgga
     2821 agtcggcgaa tcgcgggtca gccagttgca tagtcaggcc atcaaacgat tacgcaccaa
     2881 actgggtaag ttataggtag cgcatgatcg cacccgaaaa gtgccgcaca acatatagac
     2941 taccaggagt tctcatgacg gtgcagcaac ctaaaaggcg gcccttgagc cgctatctta
     3001 aagactttaa acacagccag acgcattgcg cgcattgtca caaattgctc gaccgcatta
     3061 cgctggttcg ccgtggcaag atcgttaata aaatcgctat ttcacagctg gatatgctac
     3121 ttgacgacgc tgcctggcag cgggagcaga aggagtgggt ggcgttgtgt cgcttttgcg
     3181 gcgatttgca ctgcaaaaag cagagtgatt ttttcgatat tatcggtttc aagcagtatt
     3241 tgtttgaaca aaccgagatg agccatggca cggtgcggga atatgtcgtg cgtttacgac
     3301 gtcttggcaa ttacctcagc gagcaaaaca tttcccacga tctgctgcag gacggttttc
     3361 tcgatgaaag cctggcgcca tggttgccgg aaaccagcac caataattac cgtatcgcac
     3421 tgcgtaaata ccagcaatat aaagcgcatc agcagattgc gcccagacag aaatccccct
     3481 ttaccgccag ttctgatata tattaaaaaa gcataagatg tagcagagtc gtgttggtga
     3541 aacgtggcaa accttctaca ttaggctgag tcccccaaag gttcgcgaga cgtgacgatg
     3601 cgccatggcg ggacacagtc tatggtcatt aacggcaata ttcggggtta ctatgaaatt
     3661 agcactgctg ggacgtcagg cactgatggg agtaatggct gtagcgctgg tggcgggaat
     3721 gagcgcgaag agctttgccg atgagggttt gctgaacaaa gttaaagaac gcggcacgct
     3781 gctggtaggg ctggaaggta cctatccgcc gtttagcttt cagggcgacg acggcaaatt
     3841 aaccggtttt gaagtcgatt tcgccgaggc gttggcaaaa catctgggcg ttaaagcgtc
     3901 gttgaagccg accaaatggg acggaatgct ggcgtcgctg gactctaaac gcattgatgt
     3961 agtgataaac caggtcacga tttcagacgt ccgcaagaaa aaatatgatt tctctacgcc
     4021 ttatactgtc tccggcgttc aggcgctggt gaaaaaaggc aatgaaggca cgatcaaaac
     4081 ggcggccgat ctgcagggca aaaaagtcgg cgttgggctg gggactaact atgaagagtg
     4141 gctacgtcaa catgttcagg gcgtggatat ccgcacctat gacgatgatc ctacaaaata
     4201 tcaggatctg cgcgtaggcc gtattgacgc gattttagtc gatcgtctgg cggcgttgga
     4261 tctggtgaaa aaaaccaaag gtacgctggc cgtcaccggt gatgcgtttt cgcgtcagga
     4321 gtccggcgtt gcgttacgta aaggcaacga agatttgctg aaggcggtag ataatgccat
     4381 tgcggaaatg caaaaagatg gcaccttaaa agcgctctcc gaaaaatggt ttggcgctga
     4441 cgtgacccaa taatgctcta cgttgcccgg caggtagtgc gccgccgggc aatatcaacc
     4501 tcatactatg tcagcaaacg gaggcgcgtg aatcggcgcc ttttttattt ccattagatc
     4561 aacgtgcata ataaaaagaa cacaccacaa cgttaccgga ggctcaatgc cactacatca
     4621 cttaacgcgc tttcctcgcc tggagcttat tggcgcgccg accccgctcg aatacctgcc
     4681 gcgattgtct gattatcttg gccgtgagat ttacattaag cgcgatgacg ttacgcccat
     4741 tgcaatgggc ggcaataaac tgcgtaagct ggagtttcta gtggccgacg cgctgcgaga
     4801 aggggcggat acgctgataa ccgcaggggc gattcagtca aaccatgtcc gtcagacggc
     4861 ggcggttgcg gccaaattgg ggctgcattg cgtcgccttg ctggaaaatc caatcggtac
     4921 caccgcggaa aattacctga cgaatggtaa tcgcctgtta ctggatttat ttaatacaca
     4981 aattgagatg tgcgatgcgc taaccgatcc ggatgcgcag ctgcaaacgc tggcgacgcg
     5041 cattgaagcg caagggttca ggccctatgt gattccggtc ggcggctcca gcgcgttggg
     5101 cgcaatggga tacgtagaga gcgccctgga gatcgtccag cagtgtgaag aggtcgtcgg
     5161 gctctcttcg gtggtggtgg cctccggcag cgccggaacg cacgccgggt tagctgtcgg
     5221 gctggaacat ctgatgccgg atgtcgaact gattggcgtg accgtttcac gttctgtcgc
     5281 cgagcagaaa cccaaagtga ttgccttgca gcaggctatt gccggccagc tggcgctgac
     5341 ggcgacggcg gatattcatt tatgggatga ctattttgcc ccgggttacg gcgtgccaaa
     5401 tgacgcgggg atggaggcgg tgaaactgct ggcgaacctg gagggggtgc tgctggatcc
     5461 ggtatatacc ggtaaagcga tggcgggtct gatagatggc atcagccaga aacgctttaa
     5521 cgatgacggg ccgattctct ttattcatac cggtggggcg cctgcgctgt ttgcctacca
     5581 tcctcatgta taacctccag gtaatcaacg cgaatgcaag aaagtatcca actggttatt
     5641 gaatcgctgc cgtatttgct taaaggcgcc gtctttaccc tgcaactgag tattggcggt
     5701 atgttttttg gtctgctgct gggatttgtg ctggcgctga tgcggatgtc tccgctatgg
     5761 ccggttcgct ggctggcgcg cttttatatc tcgatttttc gcggtacgcc gcttatcgcc
     5821 cagttattta tgatctatta cggcctgccg caatttggta ttgagctgga ccctatcccg
     5881 gcggcgatga ttggtttatc gctcaatacc gcggcttaca cgtccgagac gctgcgcgcg
     5941 gcgatctcgg ctatcgacaa gggacaatgg gaagcggcgg cgagcattgg catgacgccg
     6001 tggcaaacgc tacgccgcgc tattttgccg caggcggccc gcgtcgcgct tccgccgttg
     6061 agcaacagct ttatcagcct ggtgaaagat acatcgctcg ccgcgacgat tcaggtgccg
     6121 gagttgttcc gccaggcgca gttaattacc tcgcgaacgc tggaggtgtt taccatgtat
     6181 ctggccgcgt cgttaatcta ctgggtaatg gcgaccgtct tatcggcact gcaaaactat
     6241 ttcgaaaacc agcttaaccg ccaggagaga gagccaaaat gagtgctatc gaagtcacca
     6301 acctggtcaa aaaatttcat ggtcaaacgg tgctgcacgg tatcgacctt gaggtgaagc
     6361 ccggagaagt cgtcgccatt atcggcccga gcggctcagg gaagacaacg ttattacgct
     6421 gtattaacct gctggaacaa ccggaagcgg gcaccattaa agtaggcgat attatcatcg
     6481 ataccgcccg cccattcagc cagcaaaaag ggttgattcg ccagctacgt cagcatgtcg
     6541 gctttgtctt tcagagtttt aacctgttcc cgcatcgtac cgtgctggaa aatatcattg
     6601 aaggtccggt gattgtaaag ggagagccga aagctgaggc gacggcgctg gcgcgggaac
     6661 tgttagccaa agtcgggttg gccggtaaag agacccgtta tccgcgccgc ctgtcgggcg
     6721 ggcaacagca gcgcgtggcg attgcgcgcg cgctggcgat gcgcccggaa gtgattctgt
     6781 ttgatgagcc gacgtcggcg cttgatcctg aattagtcgg cgaggtgctt aatacgattc
     6841 gccagctggc gcaggaaaag cgcacgatgg tgatcgtcac tcacgaaatg ggctttgcgc
     6901 gtgacgtggc tgaccgggca atatttatgg atcaggggca aatcgtcgaa caggggccgg
     6961 cgaaaacctt gttcgccgat cctcagcatc cgcgtactcg ccagttcctt gagaaatttt
     7021 tagtgaaata ataccttttc aacgctcgcc cgaattagcc gtgcctcggg cgagcgcaat
     7081 gaataattat gaagtcattc tgccagatta ttaacctcgc tctttggcgg aagtcgaaaa
     7141 actgtaatgc cgctcaagta
//
LOCUS       DAJVSD010000228         7138 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.228, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000228 DAJVSD010000000
VERSION     DAJVSD010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7138)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7138)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7138
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.228"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..167
                     /locus_tag="OQP62_003706"
     CDS             <1..167
                     /locus_tag="OQP62_003706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1723136.1"
                     /translation="VLSLLKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHET
                     AHMVYEIYGM"
     gene            273..1208
                     /gene="ttcA"
                     /locus_tag="OQP62_003707"
     CDS             273..1208
                     /gene="ttcA"
                     /locus_tag="OQP62_003707"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HCS1723137.1"
                     /translation="MQEIQKNTKKEQYNLNKLQKRLRRNVGEAIADFNMIEEGDRIMV
                     CLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGVEYKI
                     VEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFL
                     NMFYGGKMKGMPPKLMSDDGKHIVIRPLAYCREKDIVRFAEAKAFPIIPCNLCGSQPN
                     LQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITHGSEVIDGGD
                     LAFDREEIPLQPAGWQPEEDDTALEALRLDVIEVK"
     gene            complement(1252..2626)
                     /gene="dbpA"
                     /locus_tag="OQP62_003708"
                     /pseudo
     CDS             complement(1252..2626)
                     /gene="dbpA"
                     /locus_tag="OQP62_003708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460614.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DbpA"
     gene            complement(3113..4096)
                     /gene="zntB"
                     /locus_tag="OQP62_003709"
     CDS             complement(3113..4096)
                     /gene="zntB"
                     /locus_tag="OQP62_003709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZntB"
                     /protein_id="HCS1723138.1"
                     /translation="MEAIKGSDVNVPDAVFAWLLDGRGGVKPLEDNDVIDSQHPCWLH
                     LNYTHPDSARWLASTPLLPNNVRDALAGESSRPRVSRMGEGTLITLRCINGSTDERPD
                     QLVAMRLYMDERFIVSTRQRKVLALDDVVSDLQEGTGPVDCGGWLVDVCDALTDHASE
                     FIEELHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPW
                     MSDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQVMQESLARRTYTMSLMAMV
                     FLPSTFFTGLFGVNLGGIPGGGWRFGFSLFCILLVVLIGGVTLWLHRSKWL"
     gene            complement(4242..5396)
                     /locus_tag="OQP62_003710"
     CDS             complement(4242..5396)
                     /locus_tag="OQP62_003710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemoreceptor protein"
                     /protein_id="HCS1723139.1"
                     /translation="MLRNISVRTCIILFMVCTFLLVDTLQITFLHDLPILITCNIIYL
                     ISALLLWWYMTCYLVVPINTAKKSIEEVAAGNLSIHISEFGNNCAGRLIPGINSLSEN
                     ISALVREIRSSSQTAMTLSEQLAARSLSLSVKTEQQSASLIQTAASMDEMAASTKNNA
                     DNTRMASIQADCATQCARKGGELMVRVTENMRSITDCASQMTEIISLIDGIAFQTNIL
                     ALNAAVEAARAGDHGKGFSVVAREVRNLAHRSAEAAKNIKALIDVTHDNVRQGAAIVQ
                     EAEKNMQEIVGGSGQLNVLMSEISTTTREQEKGINQITLALSDLESATHSNVLMVEAL
                     SASSDVLKAQVIELQTKTDKFRLSQPGYSEHALSRSHVSPLSTITRRGQA"
     gene            complement(5807..6370)
                     /gene="smrA"
                     /locus_tag="OQP62_003711"
     CDS             complement(5807..6370)
                     /gene="smrA"
                     /locus_tag="OQP62_003711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA endonuclease SmrA"
                     /protein_id="HCS1723140.1"
                     /translation="MNLDDKALFLDVMEDVQPLKRHTDVHWQPTRNLKTPQRIDTLQL
                     DNFLTTGFLDILPLNEPLEFRREGLQQGVIDKLRSGKYPQQASLNLLRQPVETCRKML
                     FRFILEAQKEGLRNVLIIHGKGREAKSHANIVRSYVARWLTEFEDVQAYCSALPHHGG
                     GGACYVALRKTVQAKQDNWERHAKRSR"
     gene            6628..>7138
                     /gene="ogt"
                     /locus_tag="OQP62_003712"
     CDS             6628..>7138
                     /gene="ogt"
                     /locus_tag="OQP62_003712"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HCS1723141.1"
                     /translation="MLRLLEEKIATPLGPLWVVCDEQFRLRAIEWEQYRDRMEQLLNI
                     HYRHEGYERVSATNPGGLSDKLADYFAGNLAVIDTLETATGGTPFQREVWQALRAIPC
                     GQVMHYGQLAAQLGRPGAARAVGAANGANPISIVVPCHRVIGRNGTLTGYAGGVQRKE
                     WLLRHEGYLL"
BASE COUNT         1770 a         1909 c         1737 g         1722 t
ORIGIN      
        1 aggtactatc tctattaaaa cgtgctggca ttcgtcgccg taatccgtac catacgcgac
       61 atacttttgc ctgctggctg ttgacggcag gagcgaaccc ggcatttatc gccagccaaa
      121 tggggcatga aactgcgcat atggtgtatg aaatttacgg tatgtagatt gatgacatga
      181 acgacgaaca agtagcgatg ttgaatgcgc ggttatcgta gttgcaaagt ttgcccccaa
      241 tttgccccat ttagtaccag agaactgaaa taatgcaaga aattcaaaag aatacaaaga
      301 aagaacaata caacctcaac aagttgcaaa agcgcctgcg ccgtaacgtt ggcgaagcga
      361 ttgccgattt taatatgatt gaagaaggcg atcgcattat ggtttgcctt tctggcggca
      421 aagatagcta tacgatgctg gaaattttac gtaatttgca gcaaagcgcc ccgatcaatt
      481 tttcactggt cgccgtcaac ctcgatcaaa agcagccagg ttttccggag catatcctgc
      541 cagcctacct tgagcagctg ggcgtagaat ataaaatcgt cgaagaaaac acctacggca
      601 ttgtgaaaga gaagattccg gaaggaaaaa ccacctgctc gctgtgctcg cgtttgcgtc
      661 ggggtatcct gtatcgtact gcgactgaac tgggcgcgac caaaatcgcc ctgggccacc
      721 atcgcgacga tattctgcaa accctgtttc tgaatatgtt ctatggcgga aaaatgaaag
      781 ggatgccgcc gaagctgatg agcgatgacg gcaaacatat cgtgatccgc ccgctggctt
      841 actgccgcga gaaagatatt gtccgttttg ctgaggccaa agcctttcct atcattcctt
      901 gtaatctgtg cggttcgcaa cccaacctgc aacgccaggt gattgccgac atgctacgcg
      961 actgggataa gcgctatcct ggacggatcg agacgatgtt tagcgccatg cagaatgtcg
     1021 tgccgtctca cctttgtgac acaaacctgt tcgatttcaa agggataact cacggttccg
     1081 aggtcatcga cggcggtgat ttagcgttcg atcgtgaaga gattccattg cagcccgctg
     1141 gctggcagcc ggaagaagat gacaccgcct tagaggcgtt gcggcttgat gttatcgaag
     1201 tgaaataatc tgcaggcgtc tcagcactcc gctgagacgc catactatcg atcattttaa
     1261 tagccgtacc cggcatgact tgcctttgat cttcccgttt tgcaactgct tccaggcttt
     1321 ttgcgctact gcttgacgta cggcgacgta aacgtgcatg ggatgcacgt taattttgcc
     1381 aatatccgcc ccgtccaatc caatatcgcc ggtcagcgcg cctaaaatat ctcccggacg
     1441 cattttcgct tttttgccgc cgtcaatgca tagggtagcc atctctgcgg ccagagggag
     1501 taacggctgc cgggcgggcg cattcagcca gttcagcttg agttgcagca tttctgaaag
     1561 aatattcgcc cgctgcgcct cttccggcgc acagaaactg atcgccaggc cgctgcttcc
     1621 cgcgcgcgcc gtacggccaa tacgatggac atgcacctcc gggtcccagg ccagctcata
     1681 gttaaccacc agttcgagcg atttaatgtc taaccctcgc gcggcaacgt cggtggcaac
     1741 cagaatgcgc gcgctgccat ttgcaaaacg caccaacgtc tggtcgcggt cgcgttgttc
     1801 cagatcgccg tggagcgcca acgcgctttg tcctaccgca ttaagcgcat cacaaacggc
     1861 ctgacaatct tttttggtat tgcaaaacac cacgcaggac gctggctgat gctggctaag
     1921 caacgtttgt agcagcgaaa ttttttcatg cgccgacgtt tcgaagaact gctgttcgat
     1981 agccggtagc gcatctaccg tatcgatttc aatacgtatt ggctgctgct gtacacgacc
     2041 gctaatcgcc gcaatggcct caggccaggt tgctgaaaac aacaacgtct ggcgcgtcgc
     2101 aggcgcaaag cggatcacct catcaatggc gtcactgaat cccatgtcca gcattcggtc
     2161 tgcttcatcc attaccagaa tgtgcagcgc atccagcgat acggtttctt tttgtaaatg
     2221 atccagcagg cgccccggcg tcgcgacaat gatatgcgga gcgtgctgaa gcgagtcgcg
     2281 ctgtgcgcca aagggctgcc cgccacacaa ggtcagaatt ttggtatttg gcagaaaacg
     2341 ggccaggcga cgtaactccc cggctacctg atccgccagc tcccgcgtcg ggcacagcac
     2401 taatgcctgt gtctggaaca gagtgacatc aattcgatgc aagagcccaa gaccaaacgc
     2461 cgccgtttta ccgctaccgg tcctggcctt gcacacgcac atcattaccc gccagaatga
     2521 cgggtaatgc tgcggcctgg acaggcgtca tctcaagata gcccagctca gtaaggttat
     2581 tgagctgggc ggcgggcaaa acattcaggg ttgaaaaagc ggtcacaatt tactctcgcg
     2641 gtaacgactc atagtcagca ggcgcgtatc ctcgcagatc cggacgtttg atgcgacatt
     2701 ttaatcggtt cttcgtccgg cggcgggtcg ggcatcggct gaggacgggg aagcggctca
     2761 ggaatgggaa cagggtcagt gggaatcggg tccgacaagg acgagtgtag atataataag
     2821 gtcaaaagac agctcatatt accctccaga atgtcattca gactcttaaa gggtagacgc
     2881 tgatatccta caggcaaaaa aaagccgact aatctaagcc ggcgtcgtac gaatcaattg
     2941 tgctatgcag taattcaaaa aaggaagcaa gacaatatag aacgcaacgc ccatcgcttg
     3001 acgttgcatt cacctgcgag agagatattg ccccgaatag gtagatggtt tattgacttc
     3061 gctcaaattt ctcggcgttt tttcacccaa aacggtctga aaagcgcttt tgttacaacc
     3121 atttactgcg atgcaaccat aaagtaacac caccgatcag gacaactaac agaatacaaa
     3181 acagagaaaa gccgaaccgc catccgccgc caggaatacc gcccaggtta acgccaaata
     3241 accccgtgaa gaaggtgctg ggcagaaaaa ccatcgccat aagcgacatg gtataagttc
     3301 tgcgcgccag agactcctgc atcacctggg caatttcatc cgccatgatg ccagtacgcg
     3361 cgatacaagc gtcaatttca tccagccccc ttcccagcct gtcggcgata tcctgcattc
     3421 tgcgccggtg atcgtcgctc atccacggca gccgttcact cgcaagccgg gcatagacgt
     3481 cgcgctgcgg cgccatatag cggcgcataa caattagctg tttacgtagc aacgcgagga
     3541 aaccgcgcgg tgggatttgc tggtcgagaa gattatcttc cagatcgata attttatcgt
     3601 gtagctcttc aataaattca ctggcgtgat cggttaacgc atcgcataca tccactaacc
     3661 agccgccgca atctacgggc ccggtgccct cctgcaaatc actgaccaca tcgtccagcg
     3721 ccagaacctt tcgctgacgg gtagacacaa tgaaccgctc gtccatatat aaacgcattg
     3781 ctactaattg atccgggcgt tcgtcagtac tgccattaat acagcgcagc gtaatgagcg
     3841 tcccttcccc catacgactt acgcgcgggc gcgagctttc accagccagc gcatcacgca
     3901 cgttattggg gagtaaaggc gttgaagcca accagcgggc gctgtccggg tgggtataat
     3961 taagatgtag ccaacaggga tgctgactat cgatcacatc attatcttcg agcggtttta
     4021 ctccaccacg accatccagt agccatgcga aaacggcatc cggcacgttc acatccgatc
     4081 ccttaatggc ttccacagcg cctccacgtt acaactctca tgccgttagt ctagctttcg
     4141 ggaaaggtta agcaatctct cattttctca ttgcgcaaaa agaatgacgg gaacgtgcga
     4201 aaaaagcgcc ttagcaacag gcgcttacca aacatgtatt atcaggcctg gccgcgcctg
     4261 gtgatggtcg aaagaggtga tacatgagag cgcgacagcg catgttcact gtaacccggc
     4321 tggcttaaac gaaatttgtc ggttttagtc tgtaactcga tcacctgcgc ctttaaaaca
     4381 tccgaagaag cagatagcgc ttcaaccatt aagacattgc tatgggttgc gctttccaga
     4441 tcgctcaacg ccagggttat ctggttaatg cctttttcct gctcccgcgt ggtggtggaa
     4501 atttcactca tcagcacgtt taattgcccg gagccgccaa caatctcctg catatttttt
     4561 tcagcctcct gcactatggc ggccccctgc cgcacattgt catgcgtaac gtcgatcagc
     4621 gccttgatat tttttgccgc ctcagcgcta cgatgcgcca gattacgcac ttccctggcc
     4681 accacggaga aaccttttcc atgatcgccc gcccgcgcag cctctaccgc cgcgttaagc
     4741 gccagaatat tagtctggaa tgcgataccg tcaatcaatg aaataatctc cgtcatctgc
     4801 gaggcacagt cggtaataga acgcatattt tctgtaaccc gcaccattaa ctcaccgcct
     4861 ttacgggcgc attgggttgc acaatccgcc tgtatgctcg ccattcgggt attatccgca
     4921 ttgtttttgg tactcgccgc catttcatcc atactggcgg cagtttgaat taacgaggcc
     4981 gactgctgtt ccgtctttac ggatagcgac agactgcgcg ccgccagttg ttcggaaagg
     5041 gtcattgccg tttgcgaaga ggatctgatt tcacgtacca gcgcggaaat attctccgac
     5101 aggctattaa tcccggggat gagtcgcccg gcgcaattat tgccaaattc ggagatatga
     5161 atagacaagt ttcctgctgc gacctcttca atacttttct tcgcggtatt aattggcact
     5221 accagatagc aggtcatata ccaccaaagc agtaatgccg agatcagata aatgatatta
     5281 cacgtaatta aaatagggag atcgtgcaga aaggttattt gtaaagtatc cactaaaaga
     5341 aacgtacata ccatgaatag aataatgcat gtcctgacgc tgatatttct caacattttt
     5401 gacggcctac aaccaggata ggagacaggt tttattttta tagcatttca gatacctatt
     5461 gccattcgtt tctttgacat tctccatatt caataccaga ccatcgccat ttcccttagt
     5521 gcaatagata aaatcatcta tattcgctat gccaggatat tcatccatcc atattgacaa
     5581 gtgatgtact tatcaccatt ttctgcttaa tagttaagtc gaaagccagt atattttaat
     5641 agacgcttaa ataagtgaat gactgtttct ccgtgttatt actgtggaca gcgttatcgc
     5701 ccgttctctt gcagaatcct gagcgtttgg atgaggcgtt atatcaggca taaaatcggg
     5761 ttcatgcgag cttgcgctgg cggtcctgtc cgccagcggc aacgatttac cgactacgct
     5821 tcgcatggcg ctcccagtta tcctgtttag cctgcaccgt tttacgtaaa gcgacataac
     5881 atgccccgcc gccgccatgg tgcggcagcg ccgaacaata agcctgtaca tcctcaaact
     5941 ctgtcaacca gcgggccaca tagcttcgga cgatattggc atgcgacttc gcctctcgcc
     6001 ctttaccatg aatgatcagg acattacgca acccctcttt ctgcgcctcc aggataaaac
     6061 gaaacagcat ttttcggcac gtttcgaccg gttggcgtaa caaattgagg ctggcctgct
     6121 gagggtattt cccactgcgt aacttgtcga tgacaccctg ctgcaatcct tcccgacgaa
     6181 attccagcgg ttcattcagc ggcagaatat ccagaaagcc cgtcgtcagg aaattatcaa
     6241 gctgaagcgt gtcgatacgc tggggcgttt taagattacg cgttggctgc cagtgtacat
     6301 cagtatggcg tttcagcggc tggacatcct ccatgacgtc aagaaacagc gctttatcgt
     6361 caaggttcat ggttcatcct ccagcgtttt tgcgactgcc gttatcataa ccgtgccctg
     6421 ttataccgac aacggtttac agttatttcc aataacagcg acaatgtcag gcaattaacc
     6481 gtctcgccag gctccctttt tctccgccaa cgatattact gtcgctaaat gtgttatccc
     6541 tgactatctt ttaaggagta tggttgcggg tattcctggc atgatatctt gtctcttacg
     6601 ttagattaag acgatgtgag agaacggatg ctgagattac ttgaagagaa gatagccacg
     6661 ccattaggtc cgttatgggt ggtttgcgat gagcagtttc gactgcgggc cattgagtgg
     6721 gaacagtacc gcgatcgtat ggagcaactg ctaaatatcc actaccgtca cgaaggctat
     6781 gaacgcgttt ctgcgactaa ccccggtgga ctcagcgata agcttgcaga ttattttgca
     6841 ggcaatctcg ccgtaattga taccttggaa accgccacgg ggggcacacc ttttcaacgg
     6901 gaagtatggc aggcgttgcg cgctatcccc tgcgggcaag tgatgcacta tggccaactg
     6961 gcggcgcaac tgggacgacc gggcgccgca cgcgcagtgg gtgctgcgaa tggcgctaac
     7021 cccatcagta ttgttgttcc ctgccatcgc gtcatcgggc gtaacggcac tctgaccgga
     7081 tacgcaggcg gcgtgcagcg aaaagagtgg ctattacgcc atgaaggcta tcttttat
//
LOCUS       DAJVSD010000229         7124 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.229, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000229 DAJVSD010000000
VERSION     DAJVSD010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7124
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.229"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            221..991
                     /locus_tag="OQP62_003713"
     CDS             221..991
                     /locus_tag="OQP62_003713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein FixA"
                     /protein_id="HCS1723142.1"
                     /translation="MKIITCYKCVPDEQDIAINNADGTLDFSKADSKISQYDLNAIEA
                     ACQLKQQLGDAQVVAMSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQHTAT
                     ALAAAAQKSGFDLLICGDGSSDLYAQQVGLLVGEALNIPAINGVSKILSLTDSTLTVE
                     RELEDEVETLSIPLPAVIAVSTDINTPQIPSMKAILGAAKKPVQVWSPADIGLNSVPA
                     YSTQQVAAPKQRERQRVVIEGDGEEQIAAFVENLRKII"
     gene            1007..1948
                     /locus_tag="OQP62_003714"
     CDS             1007..1948
                     /locus_tag="OQP62_003714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HCS1723143.1"
                     /translation="MNKFSSVWVFSDTPSRLPELMSGAQAVGEKVNAFVLNEADSATA
                     CHLGADHVWLLSGKPEDRMIEDYAAAMAETIRQHSEGGAVLLPNTRRGKLLAAKLGYR
                     LSAAVSNDASDVSLQDGKAAVKHMVYGGLAIGAETIASPFAVITLSSGTFDAQQPDAS
                     RSGEMHTVQWQAPATAVTRTATQARQSNSVDLDKARLVVSVGRGIGSKENISLAEALC
                     QTIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANGAQT
                     IFAINKDKNAPIFQYADFGIVGDALKILPALTAALAR"
     gene            1998..3284
                     /locus_tag="OQP62_003715"
     CDS             1998..3284
                     /locus_tag="OQP62_003715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HCS1723144.1"
                     /translation="MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN
                     VTGGRLYAHSLERIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVS
                     YSVLRSKFDAWLMEQAEEAGAQLITGIRVDNVVQRDGKVVGVEADGDILEAKVVILAD
                     GVNSLLAEKLGMAKRVEASHVAVGVKELIELPKSVIEDRFQLQGNEGAACLFAGAPTD
                     GLMGGGFLYTNETTLSLGLVCGLHHLKDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEY
                     AAHVVPEAGMNMQPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAISAGEAAAKTVLSA
                     MKRDDFSKQSLGEYRQHLDEGPMRDMRMYQKLPAFLDNPRMFTAYPEMAVSIARDLFT
                     VDGSAPVPMRKKILRHAKKVGFINLMKDGLKGVTVL"
     gene            3281..3568
                     /gene="fixX"
                     /locus_tag="OQP62_003716"
     CDS             3281..3568
                     /gene="fixX"
                     /locus_tag="OQP62_003716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-like protein FixX"
                     /protein_id="HCS1723145.1"
                     /translation="MTSPVNVDVKLGVNKFNVDEDSPHIILKTDPDKQALEVLVKACP
                     AGLYKKQDDGSVRFDYAGCLECGTCRILGLDTALEKWEYPRGTFGVEFRYG"
     gene            3716..5056
                     /locus_tag="OQP62_003717"
     CDS             3716..5056
                     /locus_tag="OQP62_003717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1723146.1"
                     /translation="MPQPRNFDDLKFSSIHRRIMLWGSGGPFLDGYVLVIIGVALEQL
                     TPLLHLDAEWIGALGAATLAGLFIGTSLFGYICDKVGRRKMFLLDIIAIGVISVATMF
                     VSTPLELLVMRVLIGIVIGADYPIATSMITEFSNTRQRAFSIGFIAAMWYVGATCANL
                     VGYWLYDMEGGWRWMLGSAFIPCLIILIGRFDLPESPRWLLRKGRVKECEQMMIKLFG
                     EPVCFDDEPPQETRFLQLFNRRHFPFVLFVAAIWSCQVIPMFAIYTFGPQIVGLLGWE
                     QGRNAALGNVVISLFFMLGCIPAMFWLNSIGRRPLLIGSFAMMTIALALLGLVSNLGI
                     ILVVVAFAVYAFFSGGPGILQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPI
                     FITRYGINNVMLIGALISLVGLGVSVMFAPETRGLTLTQTGNMTLRGTPSDNPR"
     gene            5145..5375
                     /locus_tag="OQP62_003718"
     CDS             5145..5375
                     /locus_tag="OQP62_003718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="HCS1723147.1"
                     /translation="MQKRLMTALFTAATLFTVAGCSSNQAVETTDGKTIVTDGKPEVD
                     NDTGMVSYKNAATGKTEQINRDQLKNMSELDN"
     gene            5666..6082
                     /locus_tag="OQP62_003719"
     CDS             5666..6082
                     /locus_tag="OQP62_003719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723148.1"
                     /translation="MKLIPFYLLALFSAASGATEINACKDLIGTWKTTADNPPYTMTI
                     LPPVEGCGEKCVKLNVQYELDVTHRNALYCHEGQEGVKGQGPMVIAFEGAYGGHAIGT
                     YNRQLQLLWAGVIPKNKKGKWITKMENYWFRQVKAH"
     gene            complement(6306..6596)
                     /locus_tag="OQP62_003720"
     CDS             complement(6306..6596)
                     /locus_tag="OQP62_003720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1723149.1"
                     /translation="MKKRIIAAALLATVASFSTLAAEQVSKQEISHFKLVKVGTINVS
                     QSGGQISSPSDLREKLSELADAKGGKYYHIIAAREHGPNFEAVAEVYNDATK"
BASE COUNT         1673 a         1760 c         1920 g         1771 t
ORIGIN      
        1 ttcaatattg ttgagccagc aaacaatatt gaaaattttc atatttggca tatttctttc
       61 aatattggtg aggtgcgtaa cactattgaa agttacgaat atcaatgtgt gacattttca
      121 atattggtga ttaaggtttt atttccgaat taaagagcgt gatatctgta tttaacaccg
      181 ccgatataaa tacgtttcct tcatgatttc tggagatgca atgaagataa ttacttgcta
      241 caaatgcgta cctgatgagc aggatattgc gattaataat gctgacggaa cactcgattt
      301 cagcaaagcg gatagcaaaa tcagccaata tgatctgaat gcaattgaag ctgcttgcca
      361 gttaaaacag cagttgggag acgctcaggt tgtcgccatg agcgttggcg gcaaagcgct
      421 gactaatgca aaagggcgca aagatgtcct ctctcgtggc cctgatgaac tgattgtggt
      481 cattgacgat caatttgagc aggcgctgcc gcaacacacc gctaccgcgc tggccgccgc
      541 ggcgcaaaaa tcaggtttcg atctacttat ctgcggcgac ggttcttccg atctttatgc
      601 tcagcaggtt ggtttgctgg tgggcgaagc gctgaacatt ccggcgatta acggcgtgag
      661 taaaatcctc tctcttaccg acagcacatt gacggtagaa cgcgaactgg aagatgaagt
      721 tgaaacgctg agcatcccgc tcccggcggt gatcgcggtt tccaccgaca ttaacacccc
      781 acaaatccct tcgatgaaag ccattcttgg cgcggcgaaa aaaccggttc aggtctggtc
      841 gcctgcggat atcgggctga acagcgtacc cgcgtattcc acacaacagg ttgccgcacc
      901 gaagcagcgc gagcgtcagc gtgtggtgat tgaaggtgac ggtgaagaac aaatcgccgc
      961 gtttgtcgag aatctgcgca aaatcattta attatcaggg gatgttatga acaaattttc
     1021 cagtgtctgg gtattcagcg ataccccttc tcgtctgccc gaactgatga gtggtgcgca
     1081 ggctgtaggt gaaaaagtta acgcgttcgt actgaacgaa gcggacagcg cgacagcatg
     1141 tcatttgggc gcggatcatg tctggctgct cagcggcaaa ccagaagatc gcatgatcga
     1201 agactacgct gctgcgatgg ctgagactat tcgtcagcat agcgagggcg gcgcggtgct
     1261 gctgccgaat acgcgtcggg gcaagctgtt ggcggcaaaa ctgggctatc gcttgtcggc
     1321 tgcggtttcc aacgacgcca gcgacgtctc cctgcaggat ggaaaagcgg cggtcaaaca
     1381 tatggtctac ggcggtctgg cgataggggc agagaccatc gcttcgccgt ttgccgtgat
     1441 cacactcagc agcggaacgt ttgacgcaca acagccggat gcttctcgca gcggcgagat
     1501 gcacaccgtg cagtggcagg ctccggccac tgccgtgacc cgcaccgcaa cccaggcgcg
     1561 tcagagcaac agcgttgacc tcgacaaagc gcgtctggtg gtcagcgtgg gacgcggcat
     1621 cggcagcaaa gagaatatct cgctggccga agcgctgtgc cagaccatcg gcgccgagct
     1681 ggcctgttcc cgcccggtgg cggaaaacga gaagtggatg gagcacgagc gctacgtcgg
     1741 tatctccaac ctgatgctca aacctgaact gtatctggcg gtggggatct ccgggcagat
     1801 ccaacacatg gtcggcgcca acggcgcgca gacgattttc gccatcaaca aagataaaaa
     1861 cgcgccaatc ttccagtatg cggattttgg catcgttggc gatgcgctga agatcctgcc
     1921 tgcgctgacg gctgccttag cgcgataaac catttcgggc aggatacgaa ggtatcctgc
     1981 cgctgacagg agtacgtatg tccgaagata tctttgatgc catcatcgtg ggtgcaggtc
     2041 tggccggttc ggttgcggcg ctggtgcttg ctcgcgaagg tgcacaggtg ctggttatcg
     2101 agcgcggcaa ttctgctggc gcgaagaatg tcaccggtgg gcgtttgtat gcacatagcc
     2161 tggaacgcat cattcccggc tttgcggatc aggcccccat tgaacgcatg atcacccacg
     2221 aaaaactcgc ctttatgacc gacaacgggg cgatgactat cgactactgc aatggtgaag
     2281 atgcttcagc gtcgcaggtt tcttattccg ttttgcgtag taaatttgac gcctggctga
     2341 tggagcaggc cgaagaggcg ggggcgcaac tgatcactgg tattcgcgtg gataacgttg
     2401 ttcagcgtga tggcaaagtc gtgggcgtgg aagccgatgg cgatattctg gaagccaaag
     2461 tcgtaatcct cgctgacggg gtgaattctc tgctggctga aaagctgggc atggccaagc
     2521 gtgttgaggc atcgcatgtt gccgtcggtg tgaaggaact gatcgaattg ccgaagtcgg
     2581 tcattgaaga tcgtttccag ctacagggca acgaaggtgc cgcctgtctg tttgccgggg
     2641 cgccaaccga tggtctgatg ggcggtggct tcctgtatac gaatgaaaca accctttccc
     2701 tagggctggt ctgcggtctt catcatctga aagacgcgaa aaaatcggtc ccgcaaatgc
     2761 tggaagattt caaacagcat ccggccgttg cgccgctgat cgccggtggc aagctggtgg
     2821 aatatgccgc acacgttgta cccgaggcgg gaatgaatat gcagcctgaa ctggtgggcg
     2881 atggtgtact gattgccgga gacgctgccg gcatgtgtat gaacctcggc tttaccatcc
     2941 ggggtatgga tctcgccata tccgcaggcg aagcggcggc gaagacggtg ctttcggcga
     3001 tgaagcgcga cgattttagc aagcagtcgt tgggtgaata ccgtcagcat ctggacgaag
     3061 gtccgatgcg cgatatgcgc atgtatcaga aactgccagc ttttcttgat aatccccgca
     3121 tgtttaccgc ctatcccgaa atggcggtca gtatcgcgcg cgacctgttc accgtggatg
     3181 gctccgcgcc ggtgcccatg cgtaaaaaaa tcctgcgcca tgcgaagaaa gtgggcttca
     3241 tcaacctgat gaaagatggc ctgaaaggag tgaccgtatt atgacatctc ccgtcaatgt
     3301 ggacgtcaaa ttgggcgtca ataagttcaa tgtggatgaa gatagcccgc acatcattct
     3361 caaaaccgat cctgataaac aggcgctgga ggtgctggtt aaggcctgtc cggcgggact
     3421 gtataaaaag caggacgacg gtagcgttcg ttttgattac gccgggtgcc tggagtgcgg
     3481 aacatgccgg atcctcggcc ttgatacggc gctggaaaaa tgggaatacc cacgcgggac
     3541 gtttggcgtg gagttccgct acggctaata agtacgagtt tgtgcccccg taggccggat
     3601 tagatgcggt agcgtcgcca tccggcaatc atgtggcgcc aatgccggat ggcggcgtaa
     3661 acgccttatc cggcctacag atgacgcttt gcccgtgttg aaacaggaca tcaccatgcc
     3721 gcagcccagg aactttgacg accttaaatt ctcctccatc catcgcagaa ttatgctgtg
     3781 gggaagcggc ggcccgttcc ttgatggcta cgtgctggtg atcattggcg tggcgctgga
     3841 acaactgacg ccgctattgc accttgatgc tgaatggatt ggcgcgctcg gcgcggctac
     3901 gcttgccgga ctgtttatcg gcacctcgtt gtttggctat atttgcgata aagtcgggcg
     3961 gcgtaaaatg ttcctgcttg atattatcgc tatcggcgtt atctccgtgg cgaccatgtt
     4021 tgtttccacg ccgcttgaat tgctggtgat gcgcgtttta attggcattg ttatcggcgc
     4081 ggattaccct atcgccactt ccatgattac ggagttttcc aacacccgcc agcgtgcgtt
     4141 ctccatcggt tttatcgccg cgatgtggta cgtcggcgcg acctgcgcca acctggtggg
     4201 ttactggctg tatgacatgg aaggaggctg gcgctggatg cttggcagcg cctttatccc
     4261 gtgcttaatc attttgattg gccgctttga cctgccggaa tcgccacgct ggctattgcg
     4321 aaaaggacgg gtaaaagagt gcgaacaaat gatgatcaaa ctgttcggcg aaccggtctg
     4381 ctttgacgat gagccgccgc aggagacccg cttcctgcag ctgtttaacc gccgtcattt
     4441 cccgtttgta ctgttcgttg cggctatctg gagctgtcag gtgatcccga tgttcgctat
     4501 ctataccttt gggccgcaga tcgtcgggtt actcggctgg gaacaggggc gcaacgcggc
     4561 gctcggcaat gtggtgatta gcctcttttt tatgctgggc tgtataccgg cgatgttctg
     4621 gctaaacagt attggccgtc gccctctgct tattggcagc ttcgccatga tgactatcgc
     4681 gctggcgctg ctggggctgg tgtcaaatct gggtatcata ctggtcgtgg tggcgtttgc
     4741 ggtatacgcc ttcttttccg gcggaccggg catactgcaa tggctttatc ctaatgaact
     4801 cttccctacg gatattcgcg cttcggccgt gggggtcatc atgtcattaa gccgtatcgg
     4861 aaccattgtc tccacctggg cattaccgat ttttattact cgttacggta ttaataacgt
     4921 catgctgatt ggcgcgttga tttcgttagt cgggcttggc gtatcggtga tgtttgcccc
     4981 ggaaactcgc ggcttgacgc taacacagac cggaaacatg actttgcgcg gaacgccatc
     5041 ggataaccct cgttaagagt gttctgcatt tctccctgct tttcgccaat aacgctacag
     5101 ttaacagtca catgctaaaa caactgaaaa gcagggagaa caccatgcaa aaacgtctta
     5161 tgaccgcact gtttaccgca gcaacactat tcaccgtcgc aggatgctct tctaaccagg
     5221 cggttgaaac cacggatggc aaaactattg tcaccgacgg gaaacccgag gtcgataacg
     5281 ataccggtat ggtgtcttac aaaaacgccg ccaccgggaa aaccgaacag attaaccgcg
     5341 atcagctgaa aaatatgagc gagctggata attaattcaa ttttttctgg ttagccgcgc
     5401 aataatattc tctctttatg cgcatccatt tattcccatg cgaataaacg gatgcctgaa
     5461 ctggcaggga cgccggaaaa cgtcgaaata cgttcgcccg tgttcccgct ttccccaccg
     5521 cgctgtccgc ttacatgagg ttacactcat cgacatttct ctgaacagcg gctcaacatt
     5581 tcccggaaaa aacatatcgc aaggcattta tccttatgat taggtataaa tgattaggta
     5641 taaggaaacg gagtctgtaa tgaaactgaa actaatacct ttttatttgc tcgcgctatt
     5701 ttctgccgcc tccggggcta cggagataaa cgcctgcaaa gacctgatcg gaacatggaa
     5761 aaccactgca gataacccgc cttataccat gacaatattg ccgccagtag aaggctgcgg
     5821 ggaaaaatgt gtgaaactga acgtacagta tgaacttgac gtgactcacc gcaacgcgct
     5881 ttattgccat gaaggacaag agggggtaaa agggcaggga cccatggtga tagcatttga
     5941 aggggcgtat ggtggacacg ctattggaac ctataaccga cagctgcaat tactttgggc
     6001 tggcgtaata ccgaaaaata aaaaggggaa atggataacg aaaatggaaa attactggtt
     6061 caggcaggta aaagcgcact aaatattacc ttaaaacagc ccgcaaaacc gtcttattca
     6121 cgaagggctt actgcctgcg cgcgcacatt ccaacggctt gcctgccccg gatgaactgt
     6181 tgataaaaaa gagggccagc atctgtttcc agacggccct gagtggattg tgacgtaaca
     6241 tggcaccttg ctggcgctct cttattattt catgccagtg ccatcgttat ggcgcaatca
     6301 gagctttatt tcgtcgcatc gttataaact tcggcaacgg cttcaaaatt cggaccatgc
     6361 tcacgtgcag cgataatatg gtaatatttt ccgcctttcg catcggctaa ttctgacagt
     6421 ttttcgcgta gatcagaggg tgaggaaatc tgcccgccac tctgggacac atttatggtg
     6481 ccgaccttaa ccagtttgaa gtggctgatt tcttgcttag agacctgctc tgccgcaagt
     6541 gtgctgaatg aagcaaccgt tgccagtaat gcggcggcaa tgatgcgttt tttcatagtt
     6601 ctgttcctgt tgcattgatg ataaggtttg cgcaatatca gtaatccgta acgaaattat
     6661 ttataccctt catacttcag gttgcttatg tgttggctac ggattactcg gcccacccat
     6721 gggcctcgcc ctgacgggcc gtcgcacgcg acgttcaaat ctgctcccgg cagatttgtc
     6781 gctcacctca gtcacataat tatctatgct cctggtgact cactcccttg ccgcctttaa
     6841 gcaactcgaa ttattttggg taataacctc ggttgattat ctgaaaatag ccttatttgg
     6901 tgtgaccgtc ttatatcttg ttatagtcac ctctttatgt tgttgtcaat gtaaaataat
     6961 gcgctgccag ctaaaaagaa acttaacccc ctgtaaataa tagtttttat attatttctt
     7021 ttaatggcgt aatttttatt gaatcacgcg acaatacgct agttttattc ataagcaaca
     7081 taacagaatt gagttatgtt ttaatttccc agagtgatat tacc
//
LOCUS       DAJVSD010000230         7084 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.230, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000230 DAJVSD010000000
VERSION     DAJVSD010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7084)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7084)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7084
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.230"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            95..1624
                     /gene="pntA"
                     /locus_tag="OQP62_003721"
     CDS             95..1624
                     /gene="pntA"
                     /locus_tag="OQP62_003721"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HCS1723150.1"
                     /translation="MRIGIPKERLPNETRVAATPKTVEQLLKLGFSVAIESGAGQLAS
                     FDDKAFAQAGADIVDGNAIWQSEIILKVNAPEEEEIALLNPGTTLVSFIWPAQNPGLM
                     EKLAERKVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAA
                     GKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE
                     EAGSGDGYAKVMSEAFIKAEMALFAAQAKEVDIIVTTALIPGKPAPKLITRDMVDSMK
                     AGSVIVDLAAQNGGNCEYTVANQVVTTDNGVKVIGYTDLPGRLPTQSSQLYGTNLVNL
                     LKLLCKEKDGNIDVDFDDVVIRGVTVIRDGDITWPAPPIQVSAQPQAAPKAAPAPKEP
                     EKPASPWRKYALMALAIILFGWLADVAPKEFLGHFTVFALACVVGYYVVWNVSHALHT
                     PLMSVTNAISGIIVVGALLQIGQGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFRK
                     N"
     gene            1635..3023
                     /gene="pntB"
                     /locus_tag="OQP62_003722"
     CDS             1635..3023
                     /gene="pntB"
                     /locus_tag="OQP62_003722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000014033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HCS1723151.1"
                     /translation="MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIA
                     LLATIFGPDTGNVAWILVAMIIGGAIGIRMAKKVEMTEMPELVAILHSFVGLAAVLVG
                     FNSYLYHDASLAPVLVNIHLTEVFLGIFIGAVTFTGSIVAFGKLRGKISSKPLMLPNR
                     HKMNLAALVVSFLLLLVFVRTESVGLQVLALLLMTIIALAFGWHLVASIGGADMPVVV
                     SMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFG
                     TDGSSTGDDQEAGEHREITAEETAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR
                     ARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGAND
                     TVNPAAQDDPRSPIAGMPVLEVWKAQNVVVFKRSMNTGYAGVQNPLFFKENTQMLFGD
                     AKASVDAILKAL"
     gene            complement(3198..4232)
                     /locus_tag="OQP62_003723"
     CDS             complement(3198..4232)
                     /locus_tag="OQP62_003723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HCS1723152.1"
                     /translation="MAKPIITLNGLKIVIMLGMLVVILSGIRFAADIIVPFILALFIA
                     VVLNPVVQRMTRCRIPRVIAVSLLIVIIVMLMVLLLAYLGTSLNELARTLPQYRSSLV
                     IPLQRIEPWLQRAGIGVSVDELAKYIDPNAAMTLVTNLLTQLSNAMSSIFLLLLTVVF
                     MLLEVPQLPEKLQQMMSRPVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAAL
                     DVRFAFVWGLLAFALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFG
                     NILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTTGGQSI
                     AVLLSDLNKR"
     gene            4649..5011
                     /gene="mdtJ"
                     /locus_tag="OQP62_003724"
     CDS             4649..5011
                     /gene="mdtJ"
                     /locus_tag="OQP62_003724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug/spermidine efflux SMR transporter
                     subunit MdtJ"
                     /protein_id="HCS1723153.1"
                     /translation="MFYWILLALAIATEITGTLSMKWASVGNGNAGFILMLVMITLSY
                     IFLSFAVKKIALGVAYALWEGIGILFITIFSVLLFDEALSTMKIAGLLTLVAGIVLIK
                     SGTRKPGKPVKEATRATI"
     gene            4998..5327
                     /gene="mdtI"
                     /locus_tag="OQP62_003725"
     CDS             4998..5327
                     /gene="mdtI"
                     /locus_tag="OQP62_003725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug/spermidine efflux SMR transporter
                     subunit MdtI"
                     /protein_id="HCS1723154.1"
                     /translation="MQQFEWIHGAWLGLAIMLEIAANVLLKFSDGFRRKCYGILSLAA
                     VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWVLFGQRLNPKGWVGVILLLAG
                     MVMIKFA"
     gene            complement(5362..6183)
                     /locus_tag="OQP62_003726"
     CDS             complement(5362..6183)
                     /locus_tag="OQP62_003726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HCS1723155.1"
                     /translation="MHKTIAVLLGIVCFLPVMAKAGGAETDATDASDVKTLFFNHDDR
                     VPVADPTQSPWDAIGQLETASGNLCTATLISPHIALTAGHCLLTPPKGKPDKAVALRF
                     VARKGVWRYEIHGIEGRVEPSLGRRLKADGDGWIVPPAAASWDFGLVILRYPPSGITP
                     VPLFTGDKAALTAALKAADRKVTQSGYPEDHLNALYSHQDCVVTGWAQNAVLSHQCDT
                     LPGDSGSPLLLHTDSGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLKALAQD"
     gene            complement(6452..6703)
                     /locus_tag="OQP62_003727"
     CDS             complement(6452..6703)
                     /locus_tag="OQP62_003727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001698353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid shock protein"
                     /protein_id="HCS1723156.1"
                     /translation="MKKVLALVVAAAMGLSSAAFAAETATPAKTAAPAKTTQTTQHHK
                     KQHKKTVEQKAQAAKKHQKKDGKKAPAKSTSKTTSQPAA"
BASE COUNT         1622 a         1737 c         1962 g         1763 t
ORIGIN      
        1 gctggggtaa catttacctc aaacgcgggc aggcgtacgc ttctcgcgct tactgacaaa
       61 ccatcatcaa aaataccgat ggaagggaac atttatgcga attggcatac caaaagagcg
      121 gttacccaat gaaacccgtg tcgctgcgac gccgaaaacg gtagagcagc tactgaagct
      181 ggggtttagc gtcgctatcg aaagcggggc gggtcaactg gcaagttttg acgacaaagc
      241 gtttgcgcag gctggcgcgg atattgtaga cggcaatgct atctggcaat cggaaattat
      301 tctcaaggtt aatgcgcctg aagaagagga aatcgcttta ctgaaccccg ggactacgct
      361 ggtcagtttt atctggcctg cgcaaaatcc tgggttaatg gagaaacttg ccgaacgtaa
      421 ggttacggtg atggcgatgg actccgtgcc gcgtatttcc cgcgcgcagt cgctcgacgc
      481 gttaagctca atggcgaata tcgcgggtta tcgcgccatt gtagaggccg cgcatgaatt
      541 tgggcgcttc tttaccgggc aaatcactgc cgccgggaaa gtgccgccgg cgaaggtgat
      601 ggtgattggc gcgggcgttg ccggtcttgc ggctatcggc gcggcaaaca gcctgggggc
      661 gattgtccgc gcgtttgaca ctcgtcctga agtcaaagag caggtccaga gtatgggggc
      721 tgagttcctc gaactggatt ttaaagagga agccggtagc ggcgatggtt acgccaaagt
      781 gatgtccgag gcgtttatca aagcggaaat ggcgctcttt gccgcccagg ccaaagaagt
      841 cgatatcatt gttaccaccg cgttgattcc gggcaaacct gcgccgaagc tgattacccg
      901 cgatatggtc gattctatga aggccggcag cgtgattgtc gacctggccg cgcagaacgg
      961 cggtaactgc gaatataccg tcgccaatca ggttgtgacg acggacaatg gcgtaaaagt
     1021 gattggctac accgatctac cggggcgttt gccgacgcag tcatcccagc tttatggcac
     1081 caacctggtt aacctgctga agctgctgtg caaagagaaa gacggcaata ttgacgtgga
     1141 ttttgacgat gtcgtgatcc gtggcgtgac ggtgattcgt gacggcgaca ttacctggcc
     1201 tgcgccgcca atccaggttt ccgcgcagcc acaggccgcg cctaaagcag cacctgcgcc
     1261 aaaagagccg gaaaagcccg cttccccctg gcggaagtat gcgttaatgg cgctggcgat
     1321 cattcttttt ggctggctgg ccgatgtcgc gccaaaagag ttcctcggcc attttaccgt
     1381 gtttgcgctc gcctgcgtgg ttggttatta cgtggtgtgg aacgtgtctc atgcgcttca
     1441 tacgccatta atgtcggtga ccaacgcaat ttcagggatt attgttgtcg gggcattatt
     1501 gcaaattggt cagggcggct gggtcagctt cctgagcttt atcgcggtgc ttatcgccag
     1561 cattaatatt ttcggtggct tcaccgtgac tcagcgtatg ctgaaaatgt tccggaaaaa
     1621 ctaaggggta acacatgtct ggaggattag ttacagctgc atacattgtt gccgcgatcc
     1681 tgtttatttt cagtcttgcc gggctttcaa agcatgaaac gtcccgccag gggaataact
     1741 tcggtattgc cgggatggcg atcgcgttgc tggcgaccat tttcgggccg gataccggca
     1801 acgtggcatg gattctggtc gccatgatta ttggcggcgc gattggcatc cgcatggcga
     1861 aaaaagttga gatgaccgag atgccggagc tggtcgcgat tctgcacagt ttcgtgggcc
     1921 tggcggcggt actggttggc tttaacagct atctgtacca tgacgccagt ctggcgccgg
     1981 tgctggtgaa tatccatctg accgaagtct tcctcggtat ctttattggc gcagtcactt
     2041 tcactggatc gatcgtagcg tttggtaaac tgcgcggcaa aatctcttct aagccgttga
     2101 tgttgcctaa ccgtcacaaa atgaatctgg cggcgctggt tgtttctttc ctgttgctgc
     2161 tggtttttgt tcgtaccgaa agcgtgggtc tacaggttct ggcgctactg ctgatgacca
     2221 ttatcgcgct ggcgtttggt tggcatctgg tcgcttctat cggcggggcg gacatgccgg
     2281 tggttgtttc aatgctgaac tcctattccg gttgggctgc cgcggcggct ggcttcatgt
     2341 tgagcaacga tttgctgatt gtgaccggcg cgctggtcgg ttcgtcaggc gcgatcctgt
     2401 cttacattat gtgtaaagcg atgaaccgct ctttcatcag cgttattgct ggtgggttcg
     2461 gtactgacgg ctcctcaacg ggcgacgatc aggaagctgg cgaacatcgc gaaattacgg
     2521 cggaagagac cgctgagatg ctgaaaaact cccactccgt cattattacg ccggggtacg
     2581 ggatggcggt agcgcaggcg cagtatccgg tggcggaaat caccgaaaaa ctgcgtgcgc
     2641 gcggtatcaa cgtgcgtttc ggcattcatc cggtggcggg tcgcctgccg gggcatatga
     2701 acgtgctgtt ggcggaggcg aaagtgcctt atgacatcgt gctggaaatg gacgaaatca
     2761 atgatgattt cgccgatacc gataccgtgc tggtgattgg cgcgaacgat acggtgaacc
     2821 cggcggcgca agacgatccc cgcagcccga tcgccggtat gccggttctc gaagtgtgga
     2881 aagcacagaa tgtcgtggtc tttaagcgtt ccatgaatac tggttatgct ggtgtgcaga
     2941 acccgctgtt ctttaaagag aatacgcaaa tgctgtttgg cgatgccaaa gccagcgtgg
     3001 atgcaattct gaaagcgctt taatctttta aacgtgcggc ggcctctttg gaggccgttt
     3061 ttatacattt caccctataa gctgcctctt tgttggctgc gctcagaaac cccggtcaca
     3121 tcgttatcta tgctcccggg gatttcttcc cttgccgccg cgatgcatct tgaatgattt
     3181 tgtgtatata ttgcatttta tcttttgttt aaatcgctaa gcagaacggc gatactctgc
     3241 ccgccggtgg tctgttcgag ggcgattttg acaatgatgg ttaacggaac ggagagcaac
     3301 atgcccaccg gacctaatag ccagccccag aaaattaacg acaaaaatac cactaaggtt
     3361 gaaaggccta aaccacgtcc catgatacgt ggctcaagga tattgccgaa gaccagatta
     3421 atcagcagat agcccgccag caccagcagc gcatcataaa acccgttaaa taccagcacc
     3481 tgaataatgg gcggcagggc agcgagcacc gatccaatat tagggatata gttcagcgcg
     3541 aaggccagta gaccccagac aaaggcgaag cggacatcca gagcggccag cattccccat
     3601 gcgaccagtc ccgtcacgat actgatcgct gtttttagca ccagataatg tgaaacgcta
     3661 tcaagcgcgc gttgaattgc cgccatacct tctaccggac ggctcatcat ctgctgcagt
     3721 ttttcaggca gttgtggaac ctccagcagc atgaatacca cggtcaataa caataaaaag
     3781 atggatgaca tggcattgga cagttgggtg agcaggttcg ttaccagagt catggcggcg
     3841 tttggatcga tatatttcgc cagctcatca accgacacgc caatgcctgc tcgctgcaac
     3901 cacggttcaa tacgttgcaa cggtatcacc aatgaggagc gatactgcgg tagggtacgg
     3961 gccagttcat ttaatgatgt ccccaaatag gccagtagca gtaccattaa cataacaata
     4021 atcacaatga gcaatgatac ggcgataacg cgcggaattc gacatcgggt catccgttgc
     4081 acaacgggat tgagaacgac tgcaataaat aacgccaaaa taaagggaac aatgatatct
     4141 gcggcgaagc ggataccgct cagaataacc accagcattc ccagcataat gacgattttt
     4201 agaccattga gcgtgatgat cggttttgcc atatcagtcc ctgttttcta tgccgacacg
     4261 aataataatg tgatgtcggt cgacctgttc tggttaaaat caaacacttc aggtaaagaa
     4321 gtgaaaatat tttgagttaa ttcctggctt atgatacaaa tcaggcgtgt tcaactaccg
     4381 aggacaatta tcatccgcga tgacgagaag caacactgcg gataattgta atattatgga
     4441 caatatgttc agcgcttttt tctccacgca aacgcatctt cactctacct cctttttcct
     4501 gcttatcggc gagcagcact ggcgtaacgc actttagtct ctcacttctg cctgagctgg
     4561 cgcaatgcgc tgtgctaact gattttattt tttagtttgc tgcgtgcagc agactcgaaa
     4621 gagtatattc tcatgcagga gaagtgtcat gttttactgg attttattag ctctggctat
     4681 cgcgactgaa attaccggca cgctctcaat gaaatgggct agcgtgggta atggcaatgc
     4741 gggttttatt ttaatgctgg tgatgatcac gctgtcatat atatttcttt cttttgcggt
     4801 aaaaaagatt gccctgggtg tagcgtatgc cttatgggaa gggatcggca ttttatttat
     4861 taccattttt agcgtgctgc tatttgatga agcattatca accatgaaga ttgccggctt
     4921 gctgacgctg gtcgccggca tcgtattgat caaatcaggg acgcgtaaac ccggcaaacc
     4981 ggtgaaggag gcgactcgtg caacaatttg aatggataca cggcgcctgg cttgggctgg
     5041 caataatgct ggaaatcgcg gctaacgttc tgttgaaatt ttcggacggc tttcgccgta
     5101 aatgctatgg catcttatcg cttgccgctg ttctggccgc cttcagcgcg ctttcccagg
     5161 cggtaaaagg gatagacctg tcggtggcgt atgcgctatg gggcggtttt ggtattgccg
     5221 ccacgctggc ggcgggctgg gtgctcttcg gccagcgctt aaatcccaaa ggctgggttg
     5281 gcgtgatatt gctgctcgcc ggaatggtca tgataaaatt tgcctgagac gatcgctgcc
     5341 ggtcaggcag cgattcccgc attaatcctg cgccagagct ttcagcttat cgcgaaagcc
     5401 ggtgacggat atagcgcggt tatcggcgcg ccagcgatct ttagccgcag gggcggagct
     5461 ttgtacgcca atgagctgcc atccgctatc cgtgtgcaat aataacggcg agccgctgtc
     5521 gccaggtaac gtgtcgcact ggtgtgagag tacggcattc tgcgcccagc cggtcacgac
     5581 gcaatcctga tgggaataga gcgcattcag atgatcttcc ggataaccgg actgcgtgac
     5641 ttttcggtct gcggctttca acgccgcagt gagcgccgct ttatcgccgg taaataaagg
     5701 cactggcgtg ataccggaag gtgggtagcg caatattacc agaccaaaat cccagcttgc
     5761 cgcggcaggc ggcacaatcc agccatcgcc atccgctttc aaacgtcggc ccagcgacgg
     5821 ttcaacgcgg ccttcaatgc cgtggatttc atagcgccat actccttttc gcgccacaaa
     5881 acgcagcgca accgctttgt ccggttttcc tttcggcggc gttagcaggc agtgacctgc
     5941 tgtcagggcg atatgcgggg agataagcgt tgccgtacac aaattaccgc tggcggtctc
     6001 tagttgcccg atggcatccc acggcgattg ggtcggatcg gcgacgggca ctcgatcgtc
     6061 atggttaaaa aaaagcgttt tgacgtcgct ggcatccgtg gcgtctgttt cagccccccc
     6121 ggctttcgcc ataaccggta aaaaacacac tatgcccagt aatacagcaa tggttttatg
     6181 catatcacac tctggtgggt aattatgatt attaacaaca aaccctcagt actactatag
     6241 acgtgacggt aagaaagtgg gagtaaaatc agataactac actcaggaaa gatagaaatg
     6301 cgtggcaata acggcgcata aaataagcac gataagaatg agctcaaagc ggtagcgaga
     6361 cacttttttg ccctcccgga aggcggcgct aaaccagaac gatttagcgc cgtaaaaacg
     6421 ggcgcggggg cgcgccgcag catgttacga cttacgcagc tggttgcgaa gttgtttttg
     6481 acgtagattt ggctggggct tttttgccat cttttttctg gtgcttttta gccgcctgcg
     6541 ctttttgctc aacggttttt ttatgctgtt ttttgtggtg ctgggtggtc tgggttgttt
     6601 tggcaggcgc tgcggttttt gcaggcgttg cagtctcagc cgcgaatgct gcggaagaga
     6661 gacccattgc agcggcaaca accagagcta atactttttt cattttgata ccctcgattt
     6721 ggttttcatt caaccccact gcggggccgg tgaaatgact atatcgctgt tatcaaaagg
     6781 cttccgtgag tgattggttt cggcatgtaa cgctatgtac aatcccccgg taacgcgatg
     6841 taagccccca ccataatagg tagctttacg ttaccggccg ttatttttgg tcgcagagtc
     6901 ggtaatatcc gccctccaga ataacaggca caccgtatat gaatccgata atctgggtgg
     6961 tatttacgct tctggcgctg gatgcaatca gagaagtcat gggcgtatca agcctggcag
     7021 gtctgtggtg aacagtgagt cgtggcgtga aaccagcccg gcgatagcgc acgttgctat
     7081 cgcc
//
LOCUS       DAJVSD010000231         7078 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.231, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000231 DAJVSD010000000
VERSION     DAJVSD010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7078)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7078)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7078
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.231"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(231..965)
                     /gene="pxpA"
                     /locus_tag="OQP62_003728"
     CDS             complement(231..965)
                     /gene="pxpA"
                     /locus_tag="OQP62_003728"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HCS1723157.1"
                     /translation="MNIDLNADLGEGCASDSELLTLVSSANIACGFHAGDAQTMLTCV
                     REALKNGVAIGAHPSFPDRDNFGRTAMVLPPETVYAQTLYQIGALGAIVQAQGGVMRH
                     VKPHGMLYNQAAKDPHLAQAIAKAVHDYDPSLILVGLAGSELIRAGERHRLVTRQEVF
                     ADRGYQADGSLVPRMQPGALIHDEEQALAQTLDMVQAGRVKSVTGVWTTVTAQTVCIH
                     GDGEYALAFARRLRAAFNARNVHVIA"
     gene            complement(955..1887)
                     /locus_tag="OQP62_003729"
     CDS             complement(955..1887)
                     /locus_tag="OQP62_003729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HCS1723158.1"
                     /translation="MLNIIRAGIYTSVQDSGRHGFRQSGLSHCGALDKPAFQTANLLV
                     GNDANAPALEITLGQLVVEFENETWFALTGAGCEAQLDDQPVWTGWRLPVKAGQRLTL
                     HRPLHGMRSYLAVAGGIAVPEVMGSCSTDLKSGIGGLEGRLLKDGDRLATGKPSRQLS
                     GPQGVKQLLWGNRIRALPGPEYREFDRASQEAFWRSPWQLSPQSNRMGYRLQGQSLTR
                     TTDRELLSHGLLPGVVQVPYNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLEQ
                     PIHFVQCSLEEALNARRERRRYLEQLTWRLQHEH"
     gene            complement(1881..2537)
                     /gene="pxpB"
                     /locus_tag="OQP62_003730"
     CDS             complement(1881..2537)
                     /gene="pxpB"
                     /locus_tag="OQP62_003730"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HCS1723159.1"
                     /translation="MQRARCYLLGETAVVLELEPPITLASQKRIWRLTQRLVDMPNVV
                     EAIPGMNNITVILREPQTLALDAIERLQRWWEESEALEPDSRSVEIPVIYGGAGGPDL
                     AAVARHSGLSEKQVVELHASVEYVVWFLGFQPGFPYLGNLPEPLHMPRRAEPRLQVPA
                     GSVGIGGAQTGIYPLSTPGGWQLIGLTPLKLFDPMRETPVLLRPGDSVRFVPQKEGIC
                     "
     gene            complement(2553..3296)
                     /gene="ybgI"
                     /locus_tag="OQP62_003731"
     CDS             complement(2553..3296)
                     /gene="ybgI"
                     /locus_tag="OQP62_003731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000798886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radiation resistance protein YbgI"
                     /protein_id="HCS1723160.1"
                     /translation="MKNTELEQLINDKLNSAAISDYAPNGLQVEGKETVQKIVTGVTA
                     SQALLDEAVRLQADAVIVHHGYFWKGESPVIRGMKRRRLKTLLANDINLYGWHLPLDA
                     HPELGNNAQLAALLGITVKGEIEPLVPWGELSMPVPGLELASWIEARLGRKPLWCGDT
                     GPENVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHAT
                     ERGGIRALSEWLNENTALDVTFIDIPNPA"
     gene            3625..5106
                     /locus_tag="OQP62_003732"
     CDS             3625..5106
                     /locus_tag="OQP62_003732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1723161.1"
                     /translation="MNKQASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDD
                     NHAYELFSAYCSLVYVTPILGGYLADKVLGNRMAVMLGAFLMAIGHLVLGASEIAPTF
                     LYLSLAIIVCGYGLFKSNISCLLGELYQPEDPRRDGGFSLLYAAGNIGSIVAPIACGY
                     VQEEYSWAMGFALAAIGMLAGLVIFLCGNRHFTHTTGVNKAVLCARNYLLPNWGWLLI
                     LLVAAPLLITVLFWKEWSVYALIVATAIGLVVLAKIYRQAQTAKQRKELGLIVTLTLF
                     SMLFWAFAQQGGSSISLYIDRFVNRDILGYSVPTAMFQSVNAFAVMLCGVVLAWLVKE
                     SVSGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAAYGHSSMPLMVLGLAVMGFAEL
                     FIDPVAMSQITRIDIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQSAFDASGAVNY
                     AINAYVDVFEQITWGALACVGVVLLIWLYQSFKFKSRALAVES"
     gene            complement(5145..6566)
                     /gene="phrB"
                     /locus_tag="OQP62_003733"
     CDS             complement(5145..6566)
                     /gene="phrB"
                     /locus_tag="OQP62_003733"
                     /EC_number="4.1.99.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HCS1723162.1"
                     /translation="MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQA
                     HDMAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFY
                     NYQYEFNERQRDAAVEKTLPSVICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLK
                     RLKEDIPPCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCS
                     QGADEYASRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSVWLNE
                     LIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQ
                     LNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGT
                     DAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPR
                     PIVEHKQARIATLSAYEAARKGA"
     gene            complement(6677..6883)
                     /locus_tag="OQP62_003734"
     CDS             complement(6677..6883)
                     /locus_tag="OQP62_003734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbfA family protein"
                     /protein_id="HCS1723163.1"
                     /translation="MEHYKDYPAHVIFARRAFAVTAGVLALPVMLFWKDRARFYSYLH
                     RVWSKTSDKPVWMAQAEKATCDFY"
BASE COUNT         1561 a         2078 c         1823 g         1616 t
ORIGIN      
        1 gtttgattag atggcgatag ctaacaatat catagtgatt ttcaaaaact ctgctgctaa
       61 cagcaataag ctcatcatac tggctattac agcatcactt ggttattttt aaaataatat
      121 attataaggg gatttatata gtattgaata aatccctctt cctgacatta agagaacaga
      181 acacgataat ttttagcagc cgtaatataa tagcttcaat cgtcgggctc tcaggcaata
      241 acgtgtacat tacgcgcatt gaacgcggcg cgtagcctgc gtgcgaatgc aagcgcatac
      301 tcgccgtcgc catgaatgca caccgtttgc gccgtgacag tcgtccacac gccagtaacg
      361 cttttcactc tcccggcttg taccatatcc agcgtttgcg ccagcgcctg ctcttcgtcg
      421 tgaatcagcg cgccaggttg catgcgcggc accaggctac cgtcggcctg atagccgcga
      481 tcggcaaaca cctcctgccg cgtcaccagg cgatggcgtt caccggcccg gatcagctca
      541 cttcccgcca gtccaaccag tatcagtgac ggatcatagt cgtgtaccgc tttcgcaatc
      601 gcctgtgcca gatggggatc tttcgccgcc tggttataga gcataccgtg cggtttgaca
      661 tggcgcatca cgccgccttg cgcctgaaca atcgccccca gcgcgccgat ttggtacagc
      721 gtctgggcgt ataccgtttc cggcggcaaa accatcgccg tccgcccaaa attatcccga
      781 tccggaaagc tgggatgcgc gccgatcgcc acgccgtttt tcagcgcctc gcgcacgcag
      841 gtcagcatgg tttgcgcatc accggcgtga aaaccacagg cgatattagc ggaggagacc
      901 agcgttaata attcgctgtc gctggcgcaa ccttcgccca aatccgcatt taaatcaatg
      961 ttcatgctga agtcgccagg taagctgttc cagatagcgc cgacgctcgc ggcgcgcgtt
     1021 gagcgcctcc tccagcgaac attgcacaaa atggatcggt tgttctagcg ggatctgcgc
     1081 cagatggtac atatctgcct cgatgatgca ggcaatgcgc ggatagccgc cagttgtctg
     1141 ggcatcattc attaacacaa taggttggcc gttgtaaggc acctgcacga caccgggcag
     1201 caaaccgtgc gacagcagtt cgcgatccgt tgtccgcgtt aacgattgtc cctgcaaacg
     1261 atagcccatg cgattacttt gcggactgag ctgccacggc gaacgccaga acgcttcttg
     1321 cgaggcgcga tcgaactcac ggtattccgg ccccggtagc gcacggatgc gattccccca
     1381 cagtaactgc ttcacgccct gcggcccgct aagctgtcgc gatggtttac ccgtcgccag
     1441 ccgatcgcca tcttttagca gccgtccttc cagcccaccg atgccggact tcagatcggt
     1501 actacacgat cccatcacct ccggcacagc aataccgccc gccaccgcca gatagctacg
     1561 catcccgtga agcggtcgat gcagcgtaag acgctgaccc gcttttaccg gcaatcgcca
     1621 gccggtccag accggttgat catccaactg cgcctcgcag cctgcgccgg taagagcgaa
     1681 ccaggtctca ttttcaaatt cgacaaccag ttgaccgaga gtgatttcca gcgccggggc
     1741 attcgcatcg ttcccgacca ggagattagc ggtctgaaag gcgggtttat ccagcgcacc
     1801 gcagtgactc agccccgact gacgaaagcc gtgacgcccg ctatcctgca cggaggtgta
     1861 aatccccgcg cgaataatat tcagcatatt ccctcctttt gcggcacaaa gcgtacgcta
     1921 tcgccagggc gtagcagaac cggggtctcc cgcatcggat cgaataactt caacggcgtg
     1981 aggccgatca gctgccagcc gcccggcgtg gataatggat aaatccccgt ctgcgcgccg
     2041 ccgatgccga cagaaccggc cggaacctgc aggcgcggct ctgcgcgtct gggcatatgg
     2101 agcggttctg gtaaattccc aagataggga aagccgggct gaaagcctaa aaaccagacg
     2161 acatactcaa cggaggcatg tagctccacg acctgctttt cactcaaacc gctgtgccgt
     2221 gccaccgccg ccagatccgg cccgcctgcg ccgccataga tcaccgggat ctcaaccgaa
     2281 cgcgagtccg gttccagcgc ctcgctctct tcccaccagc gctgcagacg ctcaatcgca
     2341 tccagcgcca gagtttgcgg ttcccgcaag atcacggtga tattgttcat cccgggaatg
     2401 gcttccacca cgttcggcat atcgaccaga cgctgcgtca gacgccagat gcgtttctgg
     2461 ctcgccagcg taatcggcgg ttcaagttcc aggacgaccg ccgtttcgcc taacagataa
     2521 caacgcgctc gctgcacttt attacctctc agttatgccg ggttagggat atcaataaac
     2581 gtcacatcca acgccgtgtt ttcgttcaac cattcgctca gggcgcgaat accgccgcgt
     2641 tcagtggcat ggtgcccggc ggcataaaaa tgcagcccct gttcgcgtgc ggaatgaatg
     2701 gtctgttcag acacctcgcc ggtaataaaa gcatccacgc cgaagcgggc ggcgctatca
     2761 ataaaacttt gtccgccgcc ggtacaccag gcgacacgct gcacattctc tggcccggta
     2821 tcgccgcacc atagcggttt acgccccaga cgcgcttcaa tccatgaggc cagttccagc
     2881 cccggcaccg gcattgagag ctctccccac ggcaccagcg gctcaatttc tcctttcacg
     2941 gtaatgccca atagcgccgc caactgcgca ttgttgccca gctcagggtg cgcatccagc
     3001 ggcagatgcc aaccgtaaag gttaatatca tttgccagta acgtttttaa gcgacggcgt
     3061 ttcatgccgc gaataaccgg agactcgcct ttccagaagt aaccatgatg aacaatgacc
     3121 gcatcggcct gcaaacgcac cgcctcatcg agcagcgcct gacttgcggt cacgccggta
     3181 acgattttct gtaccgtctc ttttccttcg acctgtaaac cattcggcgc ataatcgctt
     3241 attgccgcac tgttcagctt gtcgttaatc agttgttcca gctcggtgtt tttcatcatc
     3301 gctcccttta acccacgttc tactttcccg ttacgggttc agtctccgtt aacatagcct
     3361 cccgttagcc gttcgtcgat aaacatttgt ttgacacatc aagaaacaat cacccccggg
     3421 tttggcgcaa attacttagc aaaacacgat cggtttcatg tatatttatg caatcagaac
     3481 gcatattgca gaaaaaatca gttctgtatc atgttggtaa ctttaaggaa acacggcgat
     3541 acggcaggct taataagccc acaaagaaag gcattatctg agaatgccgc gttcttgccg
     3601 cagcgtctct atcccggaaa tacgatgaat aaacaagcat ctcaaccccg cgctatttac
     3661 tacgttgtcg ccctgcaaat ttgggagtac ttcagctttt atggtatgcg cgccctactg
     3721 attctttatc tcaccaatca gctaaaatac gacgataacc acgcctatga gttattcagc
     3781 gcttattgtt cgctggtcta cgtaacgcca attctcggcg gctatctggc ggataaggtg
     3841 cttggcaacc gaatggcagt catgctgggc gcatttttaa tggctatagg tcatttagtg
     3901 ctgggcgcca gtgagatcgc gccgacattc ctttatctgt cgctggcgat cattgtctgc
     3961 ggctacggcc tgtttaaatc gaatattagc tgcctgctgg gcgaactgta ccagccggaa
     4021 gatccgcgcc gcgacggcgg gttctcgctg ctttacgcag cgggcaatat tggttcgatc
     4081 gtggcgccta tcgcctgcgg ctatgtgcaa gaggagtaca gttgggcgat gggctttgcg
     4141 ctcgccgcca ttggtatgct ggcggggctg gtgatcttcc tgtgtggaaa tcgtcatttc
     4201 acccacacta ccggcgtgaa taaagccgtg ttgtgcgcca gaaactacct gctgccgaac
     4261 tggggctggc tgttaattct gctggtagcg gcgccgttgc tgattaccgt tctgttctgg
     4321 aaagaatggt ctgtctatgc cttaatcgtg gcgaccgcga tcggcctggt cgtgctggca
     4381 aaaatttatc gtcaggcgca aacggccaaa caacgcaaag aactggggct gattgtcacc
     4441 ctgaccctgt tcagtatgct gttctgggcg tttgcccagc agggcggcag ttctatcagc
     4501 ctgtatatcg accgctttgt gaaccgcgat attctgggct attccgttcc taccgccatg
     4561 ttccagtcgg tgaacgcctt tgccgtgatg ctgtgtgggg tcgtcctggc ctggctggtt
     4621 aaagagagcg taagcggtaa tcgcaccgtg cgtatctggg gcaaattcgc gctgggtctc
     4681 ggtctgatga gcgccggatt ctgtattctg accctgagcg cacgctggtc cgccgcttac
     4741 ggacactctt caatgccgct aatggtgctg ggactggcgg tgatgggctt tgccgagctg
     4801 tttatcgacc cggtcgccat gtcgcaaatt acgcgcattg atatccccgg cgtcaccggc
     4861 gtattaaccg gaatttatat gctgctgtcc ggcgcgatag ctaactatct ggcaggcgtc
     4921 atcgctgacc agacctcgca aagcgccttc gacgccagcg gcgcggttaa ttacgccatc
     4981 aacgcctatg tggatgtttt tgaacagatc acctggggcg cgttagcctg cgtaggggtt
     5041 gtcctgctga tttggctgta tcagtccttc aaattcaaaa gccgcgcgct ggccgtcgaa
     5101 tcctgatagc agaaggcccg gtagtttgcg ctaccgggcc tgtatcacgc cccttttctc
     5161 gccgcctcat aggcggaaag cgttgcgatt ctcgcctgtt tgtgctccac aataggccga
     5221 ggataatcaa gtacgactcc cgctttttcc gcccaccgcc acggctcgtg aatcgctttt
     5281 ccaggtatat cgcgtaatgc cggtagccac tggcggataa attcgccgtc gcgatcgaac
     5341 ctctctctct gagtcgtggg attaaaaata cgaaaataag gcgcggcatc ggtaccggtt
     5401 gaagcggccc actgccagcc gccattattg gcggcaagat cgccgtcaat aagctgcgac
     5461 atgaaatagc gctcccccaa ccgccagtca attagcagat cttttaccag aaagctggcg
     5521 gtaatcatgc gtaaacggtt atgcatccag cccgtcgcgt taagctggcg catcgccgca
     5581 tcgacaatgg gataaccggt ttcgcctttc tgccatgcct gaaaatagtg cgggttctcc
     5641 tgccacgcga cgcgttttgt ccagcggata aacggctggt gtttgcataa tgccggatac
     5701 caggtcatta aatgacggta aaattcccgc cagatgagct cattcaacca gacgcttccc
     5761 ggcccgccgt ccagcgcctg cggctgctcc gccagtaatc ggtgcaggca ctgtcgcggc
     5821 gacaggccac ccgtcgccag gctggcggaa agccgactgg tgccgtcaac cgcagggaaa
     5881 tcgcgccgtg acgcatactc gtctgcgccc tgcgagcaaa aatgacgtag ctgcgcgatg
     5941 accgcgtttt cttccaccgg gaaaagcgcg gcgtcaaacg cctgttgcgg gtagttaagc
     6001 gagactggcg ttaagggtat agaaagcgcg ccgctcaccc ggatcttcgg ggccggaacg
     6061 cacggcggga tatcctcttt tagccgtttc aaccaggcgt ttttaaacgg cgtaaaaact
     6121 ttatacattt catgattgcc ggtcatcacc gcgccgggcg ccagaatcac gctatcgtca
     6181 aagccttcgc agatgacaga tggcagcgtt ttttccaccg ccgcatcacg ctgacgctcg
     6241 ttaaactcat actgatagtt ataaaacaga tggctgacgt catgctgccg gcaaacgttt
     6301 ttaaccgtct caatactggc gttaaaatcc gccacttcat gaaacagcag cggaatccct
     6361 ttctctgcaa gggccgtctg tagcgcattg agctgcgcgc tgatgaatgc cgcctgccgc
     6421 ggcgccatat catgggcctg ccactgggcg ggggtggaaa tataaagcgc cagcacccgc
     6481 gcggatgcat cgcggcaggc ggcggccagc gcaaggttat cctgtaaacg cagatcgcgc
     6541 ctgaaccaga ctaaatgggt gggcatacaa ctcctgaaag atgaaacgtc acggcgaata
     6601 gcgttaaaca gtgtagaccc tggcgcataa aaaaaccgcc agcgtggcgg ctgacggttt
     6661 ttcaggctgg tcgcgattaa taaaagtcgc aggtggcttt ttcagcctgc gccatccata
     6721 ccggtttatc actggttttc gaccagacac ggtgcagata actataaaaa cgcgcgcggt
     6781 ctttccagaa gagcatcacc ggcaacgcca gcacgcctgc ggtcaccgcg aaagcacgac
     6841 gtgcaaaaat gacatgcgct ggatagtctt tatagtgttc catacgtttc ccccctttat
     6901 accgacgcta tccgccccgg tatagattga atcggtgaat agcaccgaaa aattgaacct
     6961 cgttacctga ttaaaatagt accgctttcg gtgtaatttc actactcatc cgaccactta
     7021 ttttcacgct tttccagcag atttacattc aaagcgtaaa ttagttacaa aaaggtta
//
LOCUS       DAJVSD010000232         7066 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.232, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000232 DAJVSD010000000
VERSION     DAJVSD010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7066)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7066)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7066
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.232"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            244..1683
                     /locus_tag="OQP62_003735"
     CDS             244..1683
                     /locus_tag="OQP62_003735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HCS1723164.1"
                     /translation="MMMQKKTWAVLLIPLCLTACHQTTNRSTAKDEILTGSYIDPTKT
                     RFPLADYSQSVDKWIPPDSADYTIPVIDSATQQRYFSALKSHYFGMDSEAHSPWNDFY
                     ITALLKKNAAQARDASIKQFLSDGSAYWGENFRLYTSRWKEEVRGNTDTQIDNIYHAS
                     RRGIMVRESLVRALPTDDPLFNDPRQAGEGYPFDNLQMSSLRPGTPVYTLTKSKDQRW
                     QYVVSPAVTGWVHSEDIASTDQKFITQWVLLAHKQLGAFINAPVSVHAAGVYYFTGRP
                     GTILPFRHQRAGQFLIAAPVRGSNGRAFIHWVWLSGNEFTAMPWKMTPENIAVLMKAM
                     HGAPYGWGNFNFYNDCSAEVRSLLMPFGIFLPRHSSAQVESAGRVVDLSHKNPQMRID
                     YLTRYGKAFTTLVYIPGHIMLYIGNTTMNGQVVPMTYQNIWGLRPNHANSRSIIGEAV
                     FLPLLRFYPENPELISLAGKVLFKLGYIE"
     gene            1896..2221
                     /locus_tag="OQP62_003736"
                     /pseudo
     CDS             1896..2221
                     /locus_tag="OQP62_003736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460895.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
     gene            2460..3125
                     /locus_tag="OQP62_003737"
     CDS             2460..3125
                     /locus_tag="OQP62_003737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecA family protein"
                     /protein_id="HCS1723165.1"
                     /translation="MKMEPLNENELEWLDDVLTKYNTDQVILDVAELDGLITAVLSSP
                     RPIEPEQWLVAIWGGPAYVPRWTSEKEMTRFMDLVFQHMADTAARLEDYPEQFEPLFG
                     LREVDGHELTIVEEWCFGYMRGVSLSDWSDLPDTLKPALEAIALHGTEENFALLDKMS
                     PEAFDKSVDAIRIAALELHAWWMAHPHTTPLQMPIKAEVKVGRNDPCPCGSGKKFKQC
                     CLH"
     gene            complement(3200..4411)
                     /gene="tyrP"
                     /locus_tag="OQP62_003738"
     CDS             complement(3200..4411)
                     /gene="tyrP"
                     /locus_tag="OQP62_003738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine transporter TyrP"
                     /protein_id="HCS1723166.1"
                     /translation="MKNRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLGLLIGLW
                     ALMCYTALLLLEVYQHVPADTGLGSLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGA
                     GELLASSINNWLGATLSPAAGVLLFTFVAGGVVCVGTSLVDLFNRFLFSAKIIFLVIM
                     LALLTPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMNGNIRRLRWVF
                     MTGSAIPLVAYIFWQLATLGSIDSPTFRGLLASHAGLNGLLQALREVVASPHVELAVH
                     LFADLALATSFLGVALGLFDYLADLFQRRSTVSGRLQTGLITFLPPLAFALFYPRGFV
                     MALGYAGVALAVLALLIPAMLVWQCRKQSPQAGYRVAGGTPALALVFICGIVVIGVQF
                     SIALGFLPDPG"
     gene            4638..4877
                     /locus_tag="OQP62_003739"
     CDS             4638..4877
                     /locus_tag="OQP62_003739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecH family protein"
                     /protein_id="HCS1723167.1"
                     /translation="MDSIHGHEVLNMMIESGEQYTHTSLEAAIKARFGERARFHTCSA
                     SDMTAAELVAFLAAKGKFIAVEDGFSTHESKICRH"
     gene            complement(4923..5420)
                     /gene="ftnA"
                     /locus_tag="OQP62_003740"
     CDS             complement(4923..5420)
                     /gene="ftnA"
                     /locus_tag="OQP62_003740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000920608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HCS1723168.1"
                     /translation="MLKTEMIDKLNEQMNLELYSSLLYQQMSAWCSYHSFEGAAAFLR
                     RHAQEEMTHMQRLFDYLTDTGSLPRINSVSSPFAEYTSLDELFRATYEHEQLITQKIN
                     ELAHAAMTSQDYPTFNFLQWYVAEQHEEEKLFKSIIDKLTLAGKSGEGLYFIDKELST
                     LDTQN"
     gene            complement(5660..5995)
                     /locus_tag="OQP62_003741"
     CDS             complement(5660..5995)
                     /locus_tag="OQP62_003741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1723169.1"
                     /translation="MKPLIFTLSLLALTGCTITRQAQVSEASPISGIVRLTYNQPLFF
                     TSRTDDYVSHGTATRECQQMGYADAVSFGQPVGTCSIYAGSLCLNTRFTLSWQCRGVS
                     VPQIMPLYY"
     gene            complement(6326..6829)
                     /locus_tag="OQP62_003742"
     CDS             complement(6326..6829)
                     /locus_tag="OQP62_003742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin-like protein"
                     /protein_id="HCS1723170.1"
                     /translation="MAAVGMVQKLNTPMNLEFYASNLYLHLSEWCSEHSLTGTATFLR
                     TQAQGNVTQMMRMFNFMKNAGATPIVKAIDVPGEELCSLEELFQKTLEDYQQRASTLS
                     RLADEAKALNDASTLDFLHTLEKEQQQDGVLLQTILEEVRSAKRAGLCLAQTDQHLLN
                     VVTYQHH"
BASE COUNT         1859 a         1646 c         1813 g         1748 t
ORIGIN      
        1 gcaggccagt ggagtattta tgcaaattaa acgagtatat aactgttcag gggtattttc
       61 tgcacaattt aattaaaggt agatagcgaa ctaatattca tcactaggta atgtgatccg
      121 cttcatgctt taatcacgtt ttgcaatatt gtcttaataa caggtcaact acagataatt
      181 tcgggttttc gtgaatggcg gttttggtca gtctctatat tatgctttcc ccgctttacg
      241 gagatgatga tgcaaaagaa aacctgggcc gttttattga taccattgtg cctcaccgct
      301 tgccaccaga cgaccaaccg atcaacagcc aaagatgaaa ttctcacagg gagctatatt
      361 gacccgacaa aaacacgctt tccgttagcg gattattcac agtcggttga taaatggata
      421 cctccggact cggctgatta cactattccg gttattgata gtgctaccca acaacgctac
      481 tttagcgcac taaaatctca ttatttcgga atggacagtg aagcgcactc gccgtggaat
      541 gatttttata ttaccgcatt gctgaaaaaa aacgcagcac aggcccggga tgccagtatt
      601 aagcagtttc ttagcgacgg cagtgcttat tggggggaaa acttcagact ttatacctct
      661 cgctggaaag aggaggttag agggaatacg gatacgcaga ttgacaatat ctatcatgcc
      721 tcccggcgag gcattatggt cagagaaagt ttagtcagag cgctgccaac ggacgacccg
      781 ctctttaacg atccccgtca ggcgggcgag gggtacccgt ttgataattt acaaatgtct
      841 tcgctgcgtc ccggtacgcc ggtctatacg ctgacgaaga gcaaagacca acgctggcaa
      901 tatgtcgttt caccagcggt aactggctgg gttcacagtg aagatattgc cagtacggat
      961 cagaaattta taacacagtg ggttttgctc gctcacaagc aactgggggc atttatcaac
     1021 gcgccggttt ctgtccatgc cgcaggcgtc tattatttca ccgggcgacc gggtactatt
     1081 ttaccgttcc gacatcaacg ggcgggccag ttcctgattg cggcgccagt tcgcggcagc
     1141 aacggtcgcg cgtttatcca ttgggtctgg ctaagcggta acgagtttac ggctatgccg
     1201 tggaaaatga cgccggaaaa tatcgccgtg ctaatgaaag caatgcacgg cgccccctac
     1261 ggttggggaa attttaactt ttataatgat tgttcagccg aagtccgcag cctgttaatg
     1321 ccgtttggca tattcctgcc cagacattca tccgcgcagg tagagtctgc tggacgggtg
     1381 gtcgatctta gtcataaaaa tccccaaatg cggatcgatt atctcaccag atacggaaaa
     1441 gcgtttacta cgctggtcta tattccaggg catattatgc tgtatatcgg taacacaacc
     1501 atgaatgggc aggtcgtgcc gatgacttat cagaatatct ggggattgcg cccaaaccat
     1561 gctaatagcc ggagcattat cggtgaggcg gtatttttgc cgttactgcg tttttatcct
     1621 gaaaatcctg agctgatatc gctggctggt aaggttctgt ttaagcttgg ttatatagaa
     1681 taggttgaca aactgtgtta tcgcggaaga catgattaag gcaaccgtgc gcgtggatat
     1741 aaagatagta tccctgtaaa ctgtgtctga aaaaagtata cgctatagtg cgggctgttt
     1801 atttgaaata ctatctggag ctgattctgg atgtgattat gtgcctcaca cattgaagtg
     1861 agagttattg ttggcggtat ctggctggag gctgggtggt aaaaagacgt aatttattgc
     1921 attttaataa cggtgcccgg tcagagcgcg atcttgggga tctggtcact aaagtttttg
     1981 agaaagcggc gaaaaaagaa ccgcaaccgc tatacacatt tagcctgccg ttgctgagtg
     2041 tgcaagatga gatccgtgtt tactgtaaga aaaaaatatc aaaatagggt acgatacgct
     2101 gtttatggaa ataacctttt ctgctgacag agaagcggta gacgaactca ttaaacactt
     2161 ttttactgaa aataagctct atttgagagg gcggttttat ctgtccgcgg cggtggtata
     2221 agttagcatg agtataatat agcgagaaac ctatctctca cttttgtgtg gggcgagcgc
     2281 ttcctggcgg aaaatctgcg ccctgatcct ccttttgtgc gttaacttcc ggaatcctcc
     2341 tcatttcgtg ttaatctggc ccctgatggt tgccatccaa actgcctgca aaaaaattat
     2401 ttttatccgc tgcaatgtaa gaggcctaca ggcggaagtc atcactgagg aaaagcatta
     2461 tgaaaatgga accattaaac gagaacgagc tggaatggct ggatgatgtg ctgacgaaat
     2521 acaataccga tcaggtcatt ttggatgtcg cggagctgga cggtctgatt actgcggtac
     2581 taagttctcc gcgtcccatc gagccggaac agtggctggt cgcgatatgg gggggacccg
     2641 cgtacgtacc gcgctggaca tctgaaaaag aaatgacgcg atttatggat ctggtattcc
     2701 agcacatggc ggacacagcc gcccggcttg aagactatcc agaacagttc gagccgctgt
     2761 ttggcctgcg agaagttgat ggccatgaat taacgattgt tgaagaatgg tgctttggtt
     2821 acatgcgcgg agtgtcgctg tccgactggt ctgacttgcc ggatacgcta aaaccggcgc
     2881 tggaagcgat tgccttacac ggcacggaag aaaactttgc gctgttggat aaaatgagcc
     2941 cggaagcgtt cgataaaagc gttgacgcta tccgtatcgc ggcgcttgag ctgcatgcct
     3001 ggtggatggc gcatccgcac acgacgccgc tacagatgcc gataaaagcg gaggtgaaag
     3061 tggggcgtaa cgatccttgt ccatgcggga gcggcaaaaa atttaagcag tgctgcctgc
     3121 attaatggct cgtaaacggc catagcgtga tgattatcga gcctggacgg cgtccgggcc
     3181 cggtaatctt tgcctggcgt taacctggat cgggcaggaa ccccagtgcg atcgaaaact
     3241 ggacgccaat cacgacaatg ccgcagataa acaccagcgc cagcgctggc gtgccgcctg
     3301 ccacacgata tcccgcctga gggctctgtt tacggcattg ccagaccagc atggcaggga
     3361 tgagtagtgc cagcactgcc agcgctacgc cggcatagcc taatgccatc acaaatccac
     3421 gtgggtagaa aagcgcaaac gccagcggcg gcagaaaggt aatcagcccg gtttgcaggc
     3481 gtccggacac cgtactgcgg cgctggaata gatcggccag gtaatcaaat aatcctagcg
     3541 ctacgcccag aaaagaggtc gccagcgcca gatcggcgaa caggtggacc gccagttcga
     3601 catgtggcga agcgaccact tctctgagcg cctgcagcag gccatttaac ccggcatggc
     3661 tggccagtag ccctctgaat gtcggcgagt cgatacttcc cagcgtggcg agctgccaaa
     3721 aaatataggc cactagcgga atggcgctac ccgtcataaa gacccaacgc agccggcgaa
     3781 tgttgccgtt catataactc acaatactcg gtacgcttcc gtgaaaacca aacgaggtga
     3841 aaatgaccgg tatggcggac aatgccagcc cctgctgtaa aggaagcgta agaagattta
     3901 ctttatgaat atgtggcgtg agcaacgcaa gcatgatgac cagaaaaatg atcttcgcgc
     3961 taaacaggaa gcggttaaaa aggtcgacca gcgaggtgcc cacacacacc accccaccgg
     4021 caacaaaggt gaacagcagc accccggcag cgggcgagag cgtggcgcca agccagttat
     4081 taatactgga tgccagtaat tctccggctc cggaaatgta ggcggcggtg agcgcataca
     4141 ttaagaacat catgctgaat cccgtaagcc actgtccgta acgtccaaga tagcgttttg
     4201 ccaacgagcc cagcccggta tccgccggaa catgttgata tacttccagt aatagtagcg
     4261 cggtataaca catcagcgcc cacagaccaa tcaacaatcc cagcgtgacg ctgaaaccaa
     4321 cgccagccgc tgccagcggc attgccagca tcccggcgcc gatagtggtg cctgccacga
     4381 taaaaatact gcccagagtt ctgtttttca cgctttctac taccccggta acaaagaacg
     4441 gtgatatccg cggcgcaggg taaggcatta cgctattttc gtcaaatggt cgttacaata
     4501 ggtgtactgg aaattttaca gttccgggca taaaagcgaa tatgggagga gacgcggaca
     4561 accgccgcaa acctgcgcta gcgcaaagtc gctcgcacaa ggacacatta ggctacaagt
     4621 tttattcagg agggcttatg gattccattc acggtcacga agtactcaac atgatgattg
     4681 agtctggcga gcagtacacg catacctcgc tggaggcggc aataaaagcg cgctttggcg
     4741 agcgggcacg atttcacacc tgttcagcat cagatatgac ggcggcggaa ctggtcgcgt
     4801 ttctggcggc gaaaggaaag tttattgcgg tggaggacgg tttttcaacg catgagagta
     4861 aaatctgccg ccattaatac gccacggtga gagcgcgtct caccgtgtaa ggacgtgctg
     4921 gattaatttt gcgtatccag ggtggagagt tctttatcaa tgaaataaag cccttcgccg
     4981 ctttttcccg ccagcgttaa tttatcaata atagatttga acagtttttc ttcttcatgc
     5041 tgttccgcca cataccactg caagaaatta aatgtcggat aatcctggct ggtcattgcg
     5101 gcatgagcca gttcattaat tttttgcgta ataagctgct catgctcata ggtcgcgcgg
     5161 aacagttcat ccagtgaggt gtactcagcg aagggcgaag aaacgctatt aatgcgcggc
     5221 aggcttccgg tatcggtaag gtagtcaaac aggcgctgca tatgcgtcat ctcttcttgc
     5281 gcatggcgac gaagaaatgc ggccgcgcct tcaaaactgt gatagctaca ccacgcgctc
     5341 atttgttgat agagcaggga ggagtacaac tccagattca tttgctcatt cagtttgtcg
     5401 atcatttctg ttttcagcat ggttccgctc cacaaatagc aaaagatata cggtaatgtg
     5461 gcgccactat aatttgttat tttattattt gcaaaaggta aaatattaaa tttaattatt
     5521 aaaaatacga atgggaataa aacgcattaa cgccagtgta tagcgtataa aaataaagga
     5581 aagccagcac cttcatgctg gcaatagcga ccctgcactc tcctctattg tacatggtgt
     5641 cggcgttaag ccagccgcct taataataaa gcggcatgat ttgcgggacg gaaacgcccc
     5701 ggcactgcca ggagagggta aatcgggtgt tcagacacaa cgagcccgca taaatgctac
     5761 aggttcctac cggctgacca aacgaaacgg catcggcata gcccatctgc tggcattcgc
     5821 gtgttgcggt tccgtgagat acatagtcat ctgtccgtga agtaaaaaat agcggctggt
     5881 tatacgtcag gcgcacgatg ccgcttatcg ggctggcttc gctgacctgc gcttgtcgag
     5941 taatggtgca tcccgtcagg gctagcagtg aaagagtaaa aataagaggc ttcataaaat
     6001 cgctccgaca gttcggtatc agaccatgct acctcgtgtc ttgcaccgtc aatggctgga
     6061 ataacttacg gattcgcctt gattaaaggt aacggcaggg gatttacagc gggaacagaa
     6121 aatgtgtgag cgtcttttca tttaatgaaa ctttgtttca ttaaatttga atgtgtgttc
     6181 gtaaatgtgt agtgtaggca aaacgtcatg atttatgcag gcgccacctc tggcaaacag
     6241 accagaaacg gtgtaggccg gataagctgc ttcgcgttgc tatccggcta ataacgtctc
     6301 aatattgtcg ctcggggtgc cgctatcagt gatgctgata ggtcacgacg ttaaggagat
     6361 gctgatcggt ttgcgccagg catagccctg ctcgtttagc gctgcgaact tcttcgagaa
     6421 tagtttgtaa aagtacgcca tcctgctgct gctctttttc cagggtatgg agaaaatcga
     6481 gcgttgaggc atcattcagc gctttcgctt catctgccag acgcgacagc gtgctggcgc
     6541 gttgctgata atcctccagg gttttctgga acaattcttc cagagagcag agctcttcac
     6601 ccggaacgtc aatggcttta acgatagggg tggcgccggc gtttttcata aaattaaaca
     6661 tgcgcatcat ttgcgtcacg ttgccttgcg cttgggtacg aagaaaggtg gctgtacctg
     6721 ttaaactgtg ttcagaacac cattcgctta gatggaggta aagatttgat gcgtaaaact
     6781 caagattcat tggcgtgttg agcttttgaa ccattcctac agctgccata acaatatcct
     6841 tatttccaga aagtgttgat gtgcatgaca gacgagaatg caacggatcg ttgtcacatt
     6901 cttacctcta tgcacaataa atactcttag cagaagaact ccgttccgcc agtcccttat
     6961 gcgatctcat ttcctgttta tcgatcggta atgagaatag cgcgtcaatg aaaataagaa
     7021 aatccttaaa tgcaattgtt tatctttttt tacattttca gctgtg
//
LOCUS       DAJVSD010000233         7066 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.233, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000233 DAJVSD010000000
VERSION     DAJVSD010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 7066)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7066)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7066
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.233"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            73..1077
                     /gene="msrP"
                     /locus_tag="OQP62_003743"
     CDS             73..1077
                     /gene="msrP"
                     /locus_tag="OQP62_003743"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HCS1723171.1"
                     /translation="MKKIRPLTEADVTAESAFFMQRRQVLKALGISAAALSLPSTAQA
                     DLFSWFKGNDRPKAPAGKPLEFSQPAAWRSDLALTPEDKVTGYNNFYEFGLDKADPAA
                     NAGSLKTEPWTLKISGEVAKPFTLDYDDLTHRFPLEERIYRMRCVEAWSMVVPWIGFP
                     LYKLLAQAQPTSHAKYVAFETLYAPDDMPGQKDRFIGGGLKYPYVEGLRLDEAMHPLT
                     LMTVGVYGKALPPQNGAPIRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLSAPNEYG
                     FYANVNPHVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYANEVASLYRGLNLRENF
                     "
     gene            1078..1677
                     /gene="msrQ"
                     /locus_tag="OQP62_003744"
     CDS             1078..1677
                     /gene="msrQ"
                     /locus_tag="OQP62_003744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase
                     heme-binding subunit MsrQ"
                     /protein_id="HCS1723172.1"
                     /translation="MRLTVKQITWLKVCLHLAGFLPLLWLFWAINHGGLSADPVKDIQ
                     HFTGRTALKFLLATLLVSPLARYAKQPLLIRTRRLLGLWCFVWATLHLTSYALLELGI
                     HNLALLGSELISRPYLTLGIISWLVLLALTLTSTQFAQRKLGKRWQTLHNVVYLVAIL
                     APIHYLWSVKILSPQPVIYAALALALLALRYRKFRQWWR"
     gene            2071..2541
                     /gene="accB"
                     /locus_tag="OQP62_003745"
                     /gene_synonym="fabE"
     CDS             2071..2541
                     /gene="accB"
                     /locus_tag="OQP62_003745"
                     /gene_synonym="fabE"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HCS1723173.1"
                     /translation="MDIRKIKKLIELVEESGISELEISEGEESVRISRTTANAGFPVM
                     QQAYAAPMMQQPALSNAVAPAATPAMEAPAAAEISGHIVRSPMVGTFYRTPSPDAKAF
                     IEVGQKVNVGDTLCIVEAMKMMNQIEADKAGTVKAILVESGQPVEFDEPLVVIE"
     gene            2552..3901
                     /gene="accC"
                     /locus_tag="OQP62_003746"
     CDS             2552..3901
                     /gene="accC"
                     /locus_tag="OQP62_003746"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009483995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HCS1723174.1"
                     /translation="MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLL
                     ADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIF
                     IGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDGPLGDDMNANRAHAKRIGYPVIIKA
                     SGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFSNDMVYMEKYLENPRHIEIQVLADG
                     QGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFE
                     FLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSITQDEVVVRGHA
                     VECRINAEDPNTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYG
                     ENRDVAIARMKNALQELIIDGIKTNIDLQTRIMNDEHFQHGGTNIHYLEKKLGLQEK"
     gene            4010..4252
                     /locus_tag="OQP62_003747"
     CDS             4010..4252
                     /locus_tag="OQP62_003747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhdT family protein"
                     /protein_id="HCS1723175.1"
                     /translation="MDARFVQAHKEARWALWLTLCYLAAWLVAAYLSGDSPGITGLPH
                     WFEMACLLTPLVFILLCWAMVKFIYRDIPLEDDDAA"
     gene            4242..5693
                     /gene="panF"
                     /locus_tag="OQP62_003748"
     CDS             4242..5693
                     /gene="panF"
                     /locus_tag="OQP62_003748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/pantothenate symporter"
                     /protein_id="HCS1723176.1"
                     /translation="MQLEVILPLVAYLVVVFGVSIYAMRKRTAGTFLNEYFLGSRSMG
                     GIVLAMTLTATYISASSFIGGPGAAYKYGLGWVLLAMIQLPAVWLSLGILGKKFAILA
                     RRYNAVTLNDMLFARYQSRLLVWLASLSLLVAFIGAMTVQFIGGARLLETAAGIPYET
                     GLLIFGVSIALYTAFGGFRASVLNDTLQGLVMLVGTIVLLVGVVHAAGGLHQAVDTLH
                     ALDPKLVTPQGADDILSPAFMTSFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIG
                     TIVVAILMFGMHLAGALGRAVLPDLTVPDLVIPTLMVKVLPPFAAGIFLAAPMAAIMS
                     TINAQLLQSSATIIKDLYLNLRPDQMQNEIRLKRMSAAITLLLGALLLLAAWKPPEMI
                     IWLNLLAFGGLEAVFLWPLVLGLYWERANAAGALSAMIVGGVLYALLATFNIQYLGFH
                     PIVPALLLSLLAFLIGNRFGSSASQATVLSTDK"
     gene            5705..6586
                     /gene="prmA"
                     /locus_tag="OQP62_003749"
     CDS             5705..6586
                     /gene="prmA"
                     /locus_tag="OQP62_003749"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HCS1723177.1"
                     /translation="MPWIQLKLNTTGANAEELSDALMEAGAVSITFQDTHDTPVFEPL
                     PGETRLWGDTDVIGLFDAETDMKDVVAILEQHPLLGAGFAHKIEQLEDKDWEREWMDN
                     FHPMRFGERLWICPSWRDIPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDGLDLNGK
                     TVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQ
                     PEAMKADVVVANILAGPLRELAPLISVLPVEGGLLGLSGILASQAESVCDAYAELFTL
                     DPVVEKEEWCRITGRKK"
BASE COUNT         1630 a         1828 c         1892 g         1716 t
ORIGIN      
        1 ttttacacat tgacacactc cctattatat tcactacacg ccatgttgtg gtgggtagac
       61 cgggagtctg tgatgaaaaa gatacgtcca ttaacagaag ccgatgtgac tgcggaatcg
      121 gcttttttta tgcagcgccg acaggtgcta aaagcattag gcatcagcgc ggccgcctta
      181 tccttaccct caacggcgca ggccgatctc ttcagttggt ttaaaggcaa cgatcgtccg
      241 aaagcgcctg ccggtaaacc gcttgagttt agtcagcctg ccgcctggcg aagcgattta
      301 gcgttaacgc cggaagataa ggtgacgggc tacaacaatt tctatgagtt tggccttgat
      361 aaagccgacc cggcggccaa tgccggaagt ctgaaaaccg aaccgtggac gttgaaaatc
      421 agcggggaag tcgcgaaacc atttacgctg gattacgacg atttaacaca tcgttttcca
      481 ttagaagagc gtatctatcg aatgcgctgc gtcgaagcgt ggtccatggt cgtgccgtgg
      541 attggtttcc ctttatataa gctactcgcg caggcacagc ccaccagcca cgctaaatat
      601 gtggcattcg aaacactata cgcgccggat gatatgccag gacagaaaga tcgctttatt
      661 ggcggcggac tgaaataccc ttatgtcgaa gggctacgtc tggacgaagc catgcatccg
      721 ctgacgctga tgaccgttgg cgtctatggt aaagcgttac ccccgcaaaa cggcgcgccc
      781 attcgcctca tcgttccatg gaagtatggt tttaaaggta ttaaatctat tgttagcatt
      841 aaactcaccc gcgaacgtcc gccaaccacc tggaatttgt cggctcccaa cgaatatggt
      901 ttttatgcca atgtgaaccc gcatgtggat catccacgct ggtctcaggc taccgaacgc
      961 tttattggtt caggcggtat ccttgatgtg caaaggcagc cgacgctgct gtttaacggc
     1021 tacgccaatg aagtcgcttc gctgtatcgc ggtctcaatt tgcgggagaa tttttaagtg
     1081 cgtctgacag taaaacagat aacctggcta aaagtttgtc tgcatcttgc cggttttttg
     1141 ccgcttctgt ggctcttttg ggcgataaat cacggtggac tcagcgcaga cccggtaaag
     1201 gatatccaac actttaccgg tagaaccgcg ctcaaatttt tgctcgccac cttgctggtt
     1261 tcaccgctgg cgcgctacgc taaacagcca ttattgatac gcacacgccg cctgttagga
     1321 ttatggtgtt tcgtttgggc gacactgcat ttaaccagct atgccttgct ggaactgggg
     1381 atacataacc tggcgctgtt aggaagcgag ttgatttcac gcccttattt gacgcttggg
     1441 atcattagct ggctggtgtt attggcgctg acgttgacct caacgcaatt tgcgcagcgt
     1501 aaattgggca aacgctggca aacactgcat aacgtcgtct atcttgtcgc gatcctggct
     1561 cccatacatt acctgtggtc ggtaaagatt ttatcaccgc aaccggtcat ctacgcggca
     1621 ttagcgttag cccttttagc gttgcgttac cggaagtttc gccagtggtg gcgctagttt
     1681 ggtgaactgt gcggtcgatt gcaaaacgca aaacaggtaa tgtccttttt atgtttcggg
     1741 ttgattatct tccctgataa gaccagtatt tagctgccaa ttgcgacgaa atagttataa
     1801 tgtgcgactt tacattcccc aacggcgatt ttcgttcgca gataagggtg acaatcgtgc
     1861 aatgaaggta tattttgttt tttgcccgaa aatggcagaa gatagccaca caatgactgg
     1921 caaatcatga atttcacctt cgggtgctac ggcataacag gcaaatcaaa gatgcgcggt
     1981 attttacccg cggcagtcat tcacatgctt tacagacggc gctaaaacgc ctgtcacaat
     2041 cacactaaac aaagagtacg gaacccactc atggatattc gtaagattaa aaaactgatc
     2101 gagctggttg aagaatcagg tatctccgaa ctggaaattt ctgaaggcga agaatctgtt
     2161 cgcatcagcc gcacaacggc aaacgccggt ttcccggtga tgcagcaggc ttatgcggcg
     2221 ccgatgatgc agcaacccgc tctgtctaac gctgtcgcgc cagcggctac tccagcaatg
     2281 gaagcgcctg ccgcagcgga aatcagtggt cacatcgtac gctccccaat ggttggtact
     2341 ttctaccgca ccccaagccc ggacgcgaaa gcgttcatcg aagtgggcca gaaagtgaac
     2401 gtgggcgata ccctgtgcat cgttgaagcc atgaaaatga tgaaccagat cgaagcagac
     2461 aaagcaggca ctgtgaaagc gattctggtc gaaagtggtc aaccggtaga atttgacgag
     2521 ccactggtcg tcatcgagta acgaggcgaa catgttggat aaaattgtca tcgccaaccg
     2581 cggcgagatc gcactacgta ttcttcgagc ctgtaaagaa ctcggcatca agaccgtcgc
     2641 tgtgcactca agcgcggatc gcgatttaaa acacgtattg ctggcggatg agacggtctg
     2701 tattggcccg gcaccgtccg taaaaagtta tctgaacatc ccggctatca ttagcgccgc
     2761 tgaaatcacc ggcgcggtgg caatccaccc gggttacggc ttcctttctg agaacgccaa
     2821 ttttgccgag caggttgaac gctccggctt tatctttatc ggcccgaaag cggacaccat
     2881 ccgcctgatg ggcgataaag tgtccgcgat taccgcgatg aaaaaagcgg gcgtgccgac
     2941 cgtaccagga tctgacggcc cactgggcga cgatatgaat gcgaaccgcg ctcatgccaa
     3001 acgtattggc tatccggtga tcatcaaagc gtccggcggc ggcggcggcc gcggtatgcg
     3061 cgtggttcgt agcgatgctg aactggcgca gtccatctcc atgactaaag cggaagcgaa
     3121 agcagctttc agcaacgaca tggtatacat ggaaaaatac ctggaaaatc cacgccacat
     3181 cgaaattcag gtgctggcgg acggccaggg caacgctatc tatctggcgg aacgcgactg
     3241 ctccatgcag cgtcgccacc agaaagtggt tgaagaagcc ccggcgccag gcattacgcc
     3301 ggaactgcgt cgctatatcg gcgaacgctg cgcgaaagcg tgcgtagaca tcggctatcg
     3361 cggcgcagga acgttcgaat tcctgttcga aaacggcgag ttctatttca tcgaaatgaa
     3421 cacccgtatt caggttgaac acccggtaac tgaaatgatt accggcgtcg atttgatcaa
     3481 agagcagttg cgcatcgcgg cgggtcagcc actgtcgatc acacaggacg aagttgtcgt
     3541 tcgaggccat gcggtagaat gccgtatcaa tgccgaagat ccgaacacct tcctgccaag
     3601 ccctggcaaa atcacgcgct tccatgcgcc tggcggcttt ggcgttcgct gggaatctca
     3661 tatctacgcg ggctacacgg tgccgccgta ctatgattcc atgatcggca aactcatctg
     3721 ctacggtgaa aaccgcgacg tggcgattgc ccgtatgaaa aatgccctgc aggaactgat
     3781 tatcgatggt atcaaaacca atatcgatct gcagacccgc atcatgaatg acgagcactt
     3841 ccagcacggt ggaaccaaca tccactatct ggagaaaaaa ctcggtcttc aggaaaagta
     3901 atcgcacgtt aatctcaaaa ggccggtgaa tccggccttt tttatttctg gggatagcga
     3961 tgccccatca tgtacaattc ccgctttctt cacccataag ggacaaaaaa tggacgctcg
     4021 ttttgttcag gcccataaag aggcgcgctg ggcgctgtgg ctgacccttt gctatctggc
     4081 ggcatggtta gtggctgctt acttatctgg agactcgccg ggaattaccg gtctgccgca
     4141 ctggttcgag atggcctgct tattgacgcc gctggtcttt attttgctgt gctgggcgat
     4201 ggtgaaattc atttatcgcg atattccgct ggaggatgac gatgcagctt gaggtcattc
     4261 taccgctggt agcctatctg gtcgtggtct tcggggtctc gatttacgct atgcgcaagc
     4321 gtaccgccgg caccttttta aacgagtatt ttcttggcag tcgttcgatg ggcgggatcg
     4381 tgctcgcgat gacgctgacc gccacctata ttagcgccag ttcatttatc ggcggtcccg
     4441 gcgcggctta taaatatggt ctgggctggg tcttgctggc gatgatccag cttcccgccg
     4501 tctggctttc actgggtatt ctgggtaaaa aattcgctat cctggcgcgt cgctataatg
     4561 ccgtcacgct taacgatatg ctattcgctc gttaccaaag ccgcctgctg gtgtggttag
     4621 caagcctgag tttattggtc gcgtttattg gcgcaatgac cgtacaattt atcggcggcg
     4681 cgcgactact ggaaaccgcg gcgggaattc cctacgaaac cggcctgcta atatttggcg
     4741 tcagtatcgc actctatacg gcgtttggcg gctttcgcgc cagcgtactt aacgatacgc
     4801 tacagggcct ggtgatgctg gtcggcacga tagtgctgct ggtgggcgtg gtgcatgcgg
     4861 cgggcggttt acatcaggcc gttgacacgc tgcacgctct cgaccccaaa ctggtaacgc
     4921 cgcagggcgc cgatgacata ctttctcccg cttttatgac ctctttttgg gtactggtct
     4981 gttttggcgt gattggcctg ccgcatacgg cagtgcgctg catttcttat aaagacagta
     5041 aagcggtaca ccggggcatt attatcggta cgattgtcgt ggcgatttta atgttcggga
     5101 tgcaccttgc cggcgcgctg ggtcgcgcgg tgcttccgga tctgacggtg ccggatctgg
     5161 tgatcccaac gctaatggtg aaagttttgc cgccgtttgc cgccgggatc ttccttgctg
     5221 cgccaatggc ggcgatcatg tcaacaatta acgcccaact gctgcaaagt tccgcgacga
     5281 tcattaaaga tctctatctc aacctgcgtc ccgatcagat gcaaaatgag atccggctga
     5341 agcgtatgtc ggcagcgatt acattactgt taggcgcgct gttgctgctg gccgcgtgga
     5401 aaccgccaga gatgatcatt tggctcaacc tgctggcgtt tggcggcctg gaagcggtgt
     5461 tcttatggcc gctggtactg ggcctttact gggagcgggc aaacgcggca ggcgcgttaa
     5521 gcgccatgat cgtgggcggc gtgctatatg ccctgcttgc cacatttaat attcagtacc
     5581 tgggctttca tccgattgtg cccgcgttac tgttaagttt attggctttt ctgatcggaa
     5641 accgattcgg ctcttccgct tcgcaagcca ccgtattgtc tactgataaa taaagagttt
     5701 tgccatgcca tggatccaat tgaaactgaa taccaccggc gcgaatgctg aagagctaag
     5761 tgatgcgctg atggaagcgg gcgccgtttc cattaccttt caggatacac acgatacgcc
     5821 ggtttttgag ccgttgccgg gcgaaacccg tctgtggggc gataccgatg tgatcggtct
     5881 gttcgacgcc gaaacagaca tgaaagacgt tgtcgcgatt ctggagcaac atccactgct
     5941 gggtgccgga tttgcccata aaatcgaaca actggaagat aaagactggg aacgcgaatg
     6001 gatggataat ttccatccga tgcgttttgg cgagcgtctg tggatttgtc ccagctggcg
     6061 tgacattccg gacgagaatg ccgtcaacgt gatgctcgac ccgggactgg cgttcggtac
     6121 gggtacgcac cccaccacct ctttatgtct gcaatggctg gacgggctcg atctcaacgg
     6181 caaaaccgtg atcgactttg gctgcggttc aggcattctg gcgattgccg cgctgaagct
     6241 gggagcggca aaggcgattg gtattgatat cgatccgcaa gctattcagg ccagtcgcga
     6301 taatgccgaa cgtaacggcg tgtctgaccg gctggagctg tacctgccga aagaccagcc
     6361 agaagccatg aaagccgacg tggtcgtcgc taacatcctg gcaggcccat tacgcgaact
     6421 ggccccgtta atcagcgtac tgcccgttga gggcggtctg ctggggcttt caggtattct
     6481 cgccagccag gcggaaagcg tctgtgatgc ttacgccgag cttttcactc tcgacccggt
     6541 cgtcgaaaaa gaagagtggt gccgcattac tggccgtaag aaataattct tgtcagcgtg
     6601 gtcgcccggc cacgcttttc tccacacaac tgccttaacg cctttcaggc accgagacat
     6661 cattaaattc atcaaatgaa tgcctgaaat aacttctttg tcactatccg tctggataaa
     6721 cagctgctac cagcggacaa acgtactggc gcttcaacgg cccgcagcca tcgccctcgt
     6781 acttagtaaa tgctgtccgg gttgttctgc agcatccgct aacgctcttt ttagcgcagc
     6841 tggaaaaatt tatgcgtgcc gttcatgaac acaaaagcgc atctgtgcac cccttccgac
     6901 tggcaatgga gaaaaatcac gcgcagcggg aagtgatctt gtcctgaaac gagacggcga
     6961 tcccattcat ttggggtaat tagcttataa aaaaagcaga ttattccgct tatcttgttt
     7021 ctggtcgaag aaatagagag aagttacggg aatttgtaag cgcgta
//
LOCUS       DAJVSD010000234         6904 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.234, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000234 DAJVSD010000000
VERSION     DAJVSD010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6904)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6904)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6904
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.234"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(73..1152)
                     /gene="fbaA"
                     /locus_tag="OQP62_003750"
     CDS             complement(73..1152)
                     /gene="fbaA"
                     /locus_tag="OQP62_003750"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016505616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HCS1723178.1"
                     /translation="MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSIN
                     AVLETAAKVKAPVIVQFSNGGASFIAGKGVKTDVPQGAAILGAISGAHHVHQMAEHYG
                     VPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLHENIEICSK
                     YLARMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFT
                     IAASFGNVHGVYKPGNVVLTPTILRDSQDYVSKKHNLPHNSLNFVFHGGSGSTAQEIK
                     DSVSYGVVKMNIDTDTQWATWEGVLNYYKENEAYLQGQLGNPKGEDQPNKKYYDPRVW
                     LRAGQTSMIARLEKAFKELNAIDVL"
     gene            complement(1254..2417)
                     /gene="pgk"
                     /locus_tag="OQP62_003751"
     CDS             complement(1254..2417)
                     /gene="pgk"
                     /locus_tag="OQP62_003751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HCS1723179.1"
                     /translation="MSVIKMTDLDLAGKRVFIRADLNVPVKEGKVTSDARIRASLPTI
                     ELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDGVDVA
                     EGELVVLENVRFNKGEKKDDEALSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADV
                     ACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIA
                     NTFVAAQGHSVGKSLYEADLVDEAKRLLTTCDIPVPTDVRVATEFSETAPATLKSVND
                     VKEDEQILDIGDASAQQLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA
                     FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEERAKK"
     gene            complement(2439..3485)
                     /gene="epd"
                     /locus_tag="OQP62_003752"
     CDS             complement(2439..3485)
                     /gene="epd"
                     /locus_tag="OQP62_003752"
                     /EC_number="1.2.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="erythrose-4-phosphate dehydrogenase"
                     /protein_id="HCS1723180.1"
                     /translation="MTVRIAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGM
                     AHLLKYDTSHGRFAWEVRHEREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGV
                     YGNREHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNQLRAEHRIVSNASCTTNCI
                     IPVIKLLDDAYGIESGTVTTIHSAMNDQQVIDAYHSDLRRTRAASQSIIPVDTKLAAG
                     ITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIV
                     DYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA
                     AVGFRLDASASTKL"
     gene            3859..4284
                     /locus_tag="OQP62_003753"
     CDS             3859..4284
                     /locus_tag="OQP62_003753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS1723181.1"
                     /translation="MTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLHAAWIAG
                     CTGSLTDVALRYAGQEATTSLTGTFEVISLNGTLELTGEHLHLAVSDPYGAMLGGHMM
                     PGCTVRTTLELVIGELPALTFSRQPCAISGYDELHISSR"
     gene            4310..4888
                     /locus_tag="OQP62_003754"
     CDS             4310..4888
                     /locus_tag="OQP62_003754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HCS1723182.1"
                     /translation="MARRPFSSQSLVLIVIAIAINMIGGQLISMLKLPIFLDSIGTLI
                     SAVLLGPFIGMLTGLLTNLLWGLLTDPIAAAFAPVAMVIGLVAGWLARAGWFRTLPKV
                     IVSGVVITLAVTLVAVPLRTALFGGVTGSGADLFVAWMHSMGQNLVESVAITVIGANL
                     VDKILTAIIVWVLLRQLPLRTTRHFPAMSAVR"
     gene            4889..5596
                     /locus_tag="OQP62_003755"
     CDS             4889..5596
                     /locus_tag="OQP62_003755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HCS1723183.1"
                     /translation="MHPFTSLTLWALAACTTLLLPAQTVFPVYSAAAFLCLLALKSTR
                     RRAKYVAWLMLSLGFGLWLVHGGWLTEWISGQPRDPQRWVYAVTLWLRLLAIVSTSQL
                     WMQYVPVQRFIRALFASRLPPGIAYLFAGPLLVVEQLKRQLTIVHEAQRARGVPLDEG
                     WYQRLRAMPALIVPLTQNALNDLTIRGAALDMRGFRLHRARTTLWAPKDSMLQRVARY
                     GMVLLILAEAGVWIWLR"
     gene            5584..6261
                     /locus_tag="OQP62_003756"
     CDS             5584..6261
                     /locus_tag="OQP62_003756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     ATP-binding protein"
                     /protein_id="HCS1723184.1"
                     /translation="MVTLEQFRYLPSDATRPPACFDFHYSTPGIVAIVGDNGSGKSTL
                     AQLMAGWYPDYLPGDIDGTGLLLGVPIGRLPLVEQSPTIHLVQQSPYLQLSGCTFSVE
                     EEVAFGPENLGLHEAEILRRIDEALTLTNCQSLRHRHPGTLSGGETQRVVIASALAMQ
                     PRLLVLDEAFSRLTSAATGTLLERLQQWALERHSLIVLFERNHFPFLTRCQRVWQLRN
                     GALTPLC"
     gene            6255..>6904
                     /locus_tag="OQP62_003757"
     CDS             6255..>6904
                     /locus_tag="OQP62_003757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HCS1723185.1"
                     /translation="MLTLNQVAYRWPDAAADCLHAISLELRDGEWLALTGDNGAGKST
                     LLRIMAGLLSPTSGSVTLNGEPIAQLKNRQRAAAIGVLFQEAENQIFHSNVAQEVAFG
                     LKLQRLSAEDISRRTQAALRLCQLTDVAEAPPLDLHAAQRRMVAVASLEAMAPPVLLL
                     DEPSRDFDAHWLTVFEHWLATCRARGTSVVAISHDAAFTRRHFSRVVRLENGRLSKG"
BASE COUNT         1460 a         1894 c         1886 g         1664 t
ORIGIN      
        1 agcctagctg ggggttttcc atagacaaaa aaatggcttc ccgagggaag ccatttcaat
       61 cagcagacta tattacagaa cgtcaatcgc gttcagttct ttaaatgctt tttccagacg
      121 agcgatcatc gaagtctggc cagcacgcag ccatacgcgc gggtcatagt atttcttgtt
      181 cggctgatct tcgcctttcg ggttgcccag ctgaccttgc agatacgctt cgttttcttt
      241 gtagtaattc agaacacctt cccaggttgc ccattgggta tcggtatcga tgttcatttt
      301 cactacgccg tagcttacgg agtctttgat ttcctgagca gtagaaccgg aaccgccgtg
      361 gaaaacgaag ttcaggctgt tgtgcggcag gttgtgtttc ttagaaacat agtcctgaga
      421 atcacgcagg atggtcgggg tcagaaccac gttacccggc ttgtaaacgc cgtgtacgtt
      481 accgaaggaa gcggcaatgg tgaaacgcgg gctgattttg ctcagctcag tgtacgcgta
      541 atcaacatct tccggctggg tgtacagagc agaagcgtcc atgtggctgt tgtccacgcc
      601 gtcttcttcg ccaccggtgc aacccagttc gatttccaga gtcatgccaa ttttggacat
      661 gcgcgccagg tatttggagc agatttcgat gttttcgtgc agagactctt cagacaggtc
      721 aatcatgtga gaagagaaca gcggtttacc ggtagccgcg aagtgttttt cacccgcgtc
      781 cagcagaccg tcgatccacg gcagcagttt cttcgcgcag tggtcagtgt gcaggataac
      841 cggcacgccg tagtgttcag ccatctggtg aacgtgatgc gcgccagaga tagcgcccag
      901 gattgccgcg ccctgaggta cgtcagtttt cacgccttta cccgcgatga aggacgcgcc
      961 gccgttggaa aactgaacga tgaccggtgc tttaactttt gcagcggttt ccagaacagc
     1021 gttgatggaa tcagtgccca cgcagttaac tgccggcaga gcaaaattgt tttcttttgc
     1081 tacctggaac actttctgta cgtcatcacc agtgatcacg cctggtttta cgaaatcaaa
     1141 aattttagac atgtttcgtt gtcctgtatc gtcgggcttt gggaaaaaac acgggccgcc
     1201 ctgaatgtca gatcggcgat aaatcaacgg gcaggaatcc ctgcccgtaa cgattacttc
     1261 ttagcgcgct cttcgagcat cgctacggct ggcagaactt taccttccac gaattcgagg
     1321 aatgcgccgc cgccagtaga aatgtaggaa attttgtcag caatgccgaa caggtcgatt
     1381 gccgccaggg tgtcgccgcc gccagcgatg gaaaacgctt cgctatcagc gatggcattc
     1441 gccacgattt cagtcccttt acggaagttc gggaactcaa acacgccaac cgggccgttc
     1501 cacagaatgg ttttggcatt cttgaggatt tcagccagct gctgagcgga agcatcgccg
     1561 atatccagga tctgctcgtc ttctttcacg tcgttaacgg atttcagagt cgctggtgcg
     1621 gtttcggaga actcggtggc aacgcgaaca tcggtcggaa ccgggatatc gcaagtggtc
     1681 agcagacgtt ttgcttcgtc aaccaggtca gcttcgtaca gggatttacc gacgctgtgg
     1741 ccctgagcgg caacgaaggt gttggcgata ccgccgccga caatcagctg gtcagcgatt
     1801 ttagacaggg aatccagaac agtcagtttg gtagatactt tagaaccacc aacgatagcc
     1861 accatcggac gagccggctc tttcagcgct ttacccagtg catccagttc agcggccagc
     1921 agcgggcctg cgcacgcgac gtcagcaaat ttgccgatac cgtgggtaga agcctgcgcg
     1981 cggtgcgcag taccaaaggc gtccatcaca aatacgtcac acagggcggc atatttttta
     2041 gacagcgctt cgtcgtcttt cttttcgcct ttgttaaagc gaacgttttc cagaaccacc
     2101 agctcacctt cggccacgtc aacgccgtcc aggtaatctt tgaccaggcg aaccgggtta
     2161 gacagtttgt ctttcaggta gttaacaacc ggcagcagag agaattcttc gttgtactcg
     2221 ccttcggtag gacgacccag gtgggaagtt accatcactt tcgcgccctg tttcagagcc
     2281 agttcgatgg tcggcagaga agcgcggata cgcgcgtcgc tggtcacttt cccttcttta
     2341 acaggtacgt tcagatccgc acggataaaa acgcgtttcc cggccagatc cagatcggtc
     2401 atcttaatta cagacatggt gaatcctctc aatgatgctt aaagttttgt cgacgctgac
     2461 gcgtcgagcc tgaaaccaac tgcggccatc gctaacgtgg tgtcgagcat cctgttagca
     2521 aagccccatt cattatcgca ccagaccagc gtcttgatca ggtgggcgcc actgacccgg
     2581 gtttgcgtgc catcaacaat ggcgctgtgc gggtcgtggt taaaatctat cgagaccaac
     2641 ggtgattccg tatagtcaac tataccatga aatgcacctt gtgctgcttt ttgcagcaac
     2701 tggttgactt cactagcttt tactggtttt ttcaccgtta cgcttaaatc gatcgccgtc
     2761 acattaatgg ttggaacgcg caccgcaatc gcctcaaaac ggtcgttaaa ctgcgggaat
     2821 atacgcgtaa tgcctgccgc cagttttgta tctaccggga taatcgactg gctggccgcg
     2881 cgcgtgcgcc gtagatcgga gtgatacgcg tcgatcacct gctgatcgtt catcgcggag
     2941 tggatcgtcg tgacggtacc agactcgatg ccgtaagcat catccaacaa tttaatgacg
     3001 ggaattatgc aattcgtggt acaggacgcg tttgagacaa tacgatgttc cgcacgcagt
     3061 tggttctggt tcacgccaaa aacgacggtg gcgtcaagat cgttgctgcc cggatgagaa
     3121 aagagcactt tcttcgcgcc agcggcaata tgcgcctcgc catgctcccg gttgccatat
     3181 acgcccgtac aatccaacac gacatccacg cccagttcgc gccacggcag atccgccagc
     3241 gttcgttcat gcagaatacg aatgacatcg tcgccgacaa aaagctgctc gcgctcgtgg
     3301 cgaacctccc atgcaaaacg cccgtggctg gtatcgtatt tcaacaaatg cgccatgcct
     3361 gcggcatccg ccagctcgtt gatggccacc acggtaattt ccgcccgacg tccggattca
     3421 tacaaagcac gaaccacgtt acgcccgatg cgaccaaagc cattaatcgc tatgcgtacg
     3481 gtcataggtc tcctgcaagg ctatcccgat tcagatgagg ctgacagagt aatgcagctt
     3541 atcgtcgagt aaaacctcac ctgtcgcaaa ctgcgactga ttggttaatt gtcgaacatt
     3601 taattaactg aaacgcttca gctagaataa gcgaaacggg gaataaaagg aatgtttgtc
     3661 cagtcgaaga agacagttat ctgacctgca tcacatttca tggccgctta cgctgcaatt
     3721 tattccatat ttaagaatca ccagtacatc cgtcagatct tttcatcgtc gcgtcacaaa
     3781 tactgattta tatcagaaag cgctgtcgcc agcgtctata ttatcagcgc cacgtccgag
     3841 tctcggagtc ctgtaacgat gactgtatct caccacaatg cctctacagc gcgcttttac
     3901 gcgcttcgtc tgcttcccgg ccaggaagtg ttttcccaat tacacgcctt tgtgcaacag
     3961 aaccaattac atgccgcctg gattgcaggg tgtaccggca gtctgaccga cgttgcgctg
     4021 cgttatgccg ggcaagaagc gaccacatcg ctcaccggca cgtttgaagt tatctcgcta
     4081 aacggcacgc ttgaattgac cggcgagcat ctgcatctcg cggtatcgga tccctacggg
     4141 gccatgctcg gcggccatat gatgccaggg tgtaccgtgc gtaccacgct ggagctggtt
     4201 atcggcgagc tgccagcgct gacgttcagc cgtcaaccgt gcgccatttc cggttatgac
     4261 gaactgcata tttcttcccg ttaattgacg actctttaag aggtacttta tggcgcgtcg
     4321 cccgttttcc agccagtctc tggtgctgat tgtcatcgct attgccatca atatgattgg
     4381 cggacagctt attagcatgt tgaagctgcc tatttttctc gactcgatcg gcaccttaat
     4441 tagcgcggta ctgttagggc cgttcatcgg catgttgact gggcttctga ccaacttgct
     4501 gtgggggctg cttaccgacc ctatcgctgc cgcgtttgcc ccggtagcga tggttatcgg
     4561 tctggtcgcc gggtggctgg cgcgcgcagg ctggtttcgt accctgccca aagtgatcgt
     4621 cagcggggtc gtcattacgt tggcggtgac gctggtcgcc gtaccgcttc gtaccgcgct
     4681 ttttggcggc gttaccggta gcggcgctga tttgttcgtc gcctggatgc attcaatggg
     4741 ccaaaacctg gtggagtcag tcgcgattac cgtcataggc gctaatctgg tcgataaaat
     4801 tctgacggcg atcatcgttt gggtgctgct gcgtcagcta ccgttacgta cgacacggca
     4861 ttttcctgcg atgtcagccg tacgctaaat gcatccgttt acctcgttaa ccttatgggc
     4921 gttggcggcc tgcaccacgc tgctactccc tgcgcagacc gtgttcccgg tttatagcgc
     4981 ggcggccttc ctctgtctgc tggcgctgaa atcaacgcgg cggcgggcga agtatgtcgc
     5041 ctggctgatg ctgtctttag ggtttgggct atggctggta catggcggtt ggctaacgga
     5101 atggataagc gggcagcctc gcgatccgca gcgctgggta tatgccgtta cgctatggct
     5161 acgtctgctg gcgatcgtgt cgacgtcgca gctatggatg cagtatgtgc cggttcagcg
     5221 gtttattcgc gccctgttcg cttcacgtct gccacccggc atcgcttacc tgttcgctgg
     5281 cccgctgctg gtcgtcgaac agctcaaacg acaactgacg atcgttcatg aagcccagcg
     5341 cgcgcgcggc gtaccgctgg atgaaggctg gtatcagcgg ctacgggcaa tgcctgcgct
     5401 gatcgtgccg cttacgcaaa atgcgcttaa cgatctgaca atacgcggcg cggcgttgga
     5461 tatgcggggg tttcggctgc atcgagcccg aaccacgctg tgggcgccga aagatagcat
     5521 gttacaacgg gttgcgcggt atggcatggt actgctaata ctggcggaag cgggagtatg
     5581 gatatggtta cgttagagca gtttcgttat cttccgtccg atgcgacacg cccgccggca
     5641 tgttttgatt tccactattc aacacccgga atagtggcga tagtcggcga taacggcagc
     5701 ggaaaaagta cgctggcgca actgatggct ggctggtatc cggattatct ccccggcgat
     5761 attgacggca caggcctact gcttggcgta cctatcgggc ggctcccgct ggtagaacag
     5821 tcgcccacca tccacctggt gcagcaatcg ccttatttac agctttccgg ctgtaccttt
     5881 agcgtagagg aagaggtggc gtttggcccg gagaatctcg gcctccatga agcggaaatt
     5941 ctacggcgca ttgacgaggc gctgactctg acaaactgcc agtcgttacg ccatcgccat
     6001 cccggcacgc tctccggcgg cgaaacgcag cgggtagtga ttgccagcgc gcttgccatg
     6061 cagcccagat tattagttct tgatgaagcc ttcagtcggc tgacgtcagc ggccaccggg
     6121 acactgctgg aacggttaca acagtgggcg ctggaacgtc attctctcat tgtgcttttt
     6181 gagcgtaatc atttcccctt tctgacgcga tgccagcggg tatggcaatt gcgcaacgga
     6241 gcgctaaccc cattatgttg acgttaaatc aggtcgctta tcgctggcca gatgccgcag
     6301 ccgactgtct gcacgccatc tcgcttgaac ttcgtgacgg cgaatggctg gcgttgaccg
     6361 gcgataacgg cgcgggaaaa tcaacgctgt tacggattat ggccggcctg ctttccccca
     6421 cttccggctc ggtaacgctt aatggagagc cgattgcgca gcttaaaaat cgtcaacgcg
     6481 ccgccgctat cggcgtactc tttcaggaag cggaaaacca gattttccac agcaatgtcg
     6541 cacaagaggt cgcttttggg ctgaaactac agcgcttatc ggcggaggat atttcacggc
     6601 gcacgcaggc cgcgctgcgg ttatgccagc taacggacgt cgccgaggcg cccccgcttg
     6661 atctgcacgc cgcgcagcgc cggatggtgg cggtcgccag tctggaggcg atggcgccgc
     6721 cggtgttatt gctggatgaa cccagccggg attttgacgc ccactggcta accgtatttg
     6781 aacactggct ggcgacatgc cgggcacggg gaaccagcgt cgtggcgatt agccatgacg
     6841 ctgcgtttac ccggcgtcat ttttcccggg tggtacggct ggaaaacggc aggttgtcaa
     6901 aggg
//
LOCUS       DAJVSD010000235         6889 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.235, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000235 DAJVSD010000000
VERSION     DAJVSD010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6889)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6889)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6889
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.235"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(119..646)
                     /locus_tag="OQP62_003758"
                     /pseudo
     CDS             complement(119..646)
                     /locus_tag="OQP62_003758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460912.1"
                     /note="structural flagella protein; individual Salmonella
                     serotypes usually alternate between the production of 2
                     antigenic forms of flagella, termed phase 1 and phase 2,
                     each specified by separate structural genes; incomplete;
                     partial in the middle of a contig; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin FliC"
     gene            903..2306
                     /gene="fliD"
                     /locus_tag="OQP62_003759"
     CDS             903..2306
                     /gene="fliD"
                     /locus_tag="OQP62_003759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HCS1723186.1"
                     /translation="MASISSLGVGSNLPLDQLLTDLTKNEKGRLTPITKQQSANSAKL
                     TAYGTLKSALEKFQTANTALNKADLFKSTVASSTTEDLKVSTTAGAAAGTYKISVTQL
                     AAAQSLATKTTFATTKEQLGDTSVTSRTIKIEQPGRKEPLEIKLDKGDTSMEAIRDAI
                     NDADSGIAASIVKVKENEFQLVLTANSGTDNTMKITVEGDTKLNDLLAYDSTTNTGNM
                     QELVKAENAKLNVNGIDIERQSNTVTDAPQGITLTLTKKVTDATVTVTKDDTKAKEAI
                     KSWVDAYNSLVDTFSSLTKYTAVEPGEEASDKNGALLGDSVVRAIQTGIRAQFANSGS
                     NSAFKTMAEIGITQDGTSGKLKIDDDKLTKVLKDNTAAARELLVGDGKETGITTKIAT
                     EVKSYLADDGIIDNAQDNVNATLKSLTKQYLSVSNSIDETVARYKAQFTQLDTMMSKL
                     NNTSSYLTQQFTAMNKS"
     gene            2321..2728
                     /gene="fliS"
                     /locus_tag="OQP62_003760"
     CDS             2321..2728
                     /gene="fliS"
                     /locus_tag="OQP62_003760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HCS1723187.1"
                     /translation="MYTASGIKAYAQVSVESAVMSASPHQLIEMLFDGANSALVRARL
                     FLEQGDVVAKGEALSKAINIIDNGLKAGLDQEKGGEIATNLSELYDYMIRRLLQANLR
                     NDAQAIEEVERLLSNIAEAWKQISPKASFQESR"
     gene            2728..3096
                     /gene="fliT"
                     /locus_tag="OQP62_003761"
     CDS             2728..3096
                     /gene="fliT"
                     /locus_tag="OQP62_003761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulatory protein FliT"
                     /protein_id="HCS1723188.1"
                     /translation="MTSTVEFINRWQRIALLSQSLLELAQRGEWDLLLQQEVSYLQSI
                     ETVMEKQTPPGITRSIQDMVAGYIKQTLDNEQLLKGLLQQRLDELSSLIGQSTRQKSL
                     NNAYGRLSGMLLVPDAPGAS"
     gene            3168..4652
                     /gene="amyA"
                     /locus_tag="OQP62_003762"
     CDS             3168..4652
                     /gene="amyA"
                     /locus_tag="OQP62_003762"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HCS1723189.1"
                     /translation="MKNPTLLQYFHWYYPDGGKLWSELAERADGLNDIGINMVWLPPA
                     CKGASGGYSVGYDSYDLFDLGEFDQKGTIATKYGDKRQLLTAIDALKKNNIAVLLDVV
                     VNHKMGADEKERIRVQRVNQDDRTQIDDNIIECEGWTRYTFPARAGQYSNFIWDYHCF
                     SGIDHIENPDEDGIFKIVNDYTGDGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKY
                     WARWVMEQTHCDGFRLDAVKHIPAWFYKEWIEHVQAVAPKPLFIVAEYWSHEVDKLQT
                     YIDQADGKTMLFDAPLQMKFHEASRQGAEYDMRHIFTGTLVEADPFHAVTLVANHDTQ
                     LLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGASYEDNGENGETCRVDMPVI
                     NQLDRLILARQRFAHGIQTLFFDHPNCIAFSRSGTEENPGCVVVLSNGDDGEKTLLLG
                     DNYANKTWRDFLGNRSEHVVTNDQGEATFFCNAGSVSVWVIEDV"
     gene            complement(4692..5105)
                     /locus_tag="OQP62_003763"
     CDS             complement(4692..5105)
                     /locus_tag="OQP62_003763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1723190.1"
                     /translation="MKKVAIVGALLVLAGCAEVENYNDVVKTPAPAGLEGYWQSKGPQ
                     RKLVSPEAIASLVVTKEGDTLDCRQWQRVIALPGKLTMLSDDLTNVTVKRELYEIERD
                     GNTLEYDGMTLQRVARPTPECAAALEKTPLPTPLP"
     gene            5361..6566
                     /gene="yedE"
                     /locus_tag="OQP62_003764"
     CDS             5361..6566
                     /gene="yedE"
                     /locus_tag="OQP62_003764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016156840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HCS1723191.1"
                     /translation="MSWQHFKQTWLIKFWAPAPAVIAAGILSTYYFGITGTFWAVTGE
                     FTRWGGQILQLFGVHAEQWGYYKLIHLEGTPLTRIDGMMILGMFGGCFAAALWANNVK
                     LRMPRSRIRIVQAVVGGMIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFALATAIGSW
                     FGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFIGMIGWALLTAMHQ
                     PKLGLAMLFGVGFGLLIERAQICFTSAFRDLWISGRAHMAKAIIFGMAVSAIGIFSYV
                     QLGVAPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEVQVHYWWVGLGNVIGS
                     TILAYYWDDFAPALATSWDKVNLLNTFGPLGGLLVTYLLLFTALMLIIGWEKRFFRRA
                     GLTPAKESV"
     gene            6563..6796
                     /gene="yedF"
                     /locus_tag="OQP62_003765"
     CDS             6563..6796
                     /gene="yedF"
                     /locus_tag="OQP62_003765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HCS1723192.1"
                     /translation="MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCP
                     QSINNIPLDARNHGYTVLDIQQDGPTIRYLIQK"
BASE COUNT         1734 a         1705 c         1831 g         1619 t
ORIGIN      
        1 caccaccgcc aattgcagtt tggatatcag tattgctctg ggctgtaata ggatctgtac
       61 catttttata ggtagtttta tcaacggtta cagcagtttc tttcggggtg taggcatctt
      121 ggacattaag cttatcaagt cccagtgttt tagagctgat ttcttttaaa tcaatatcga
      181 tagtttcacc gtcgttggca ccaacctgga tggtcagggt gttgtcctgc gccaggactt
      241 tcacgccgtt gaactgagtc tggccggata cacggtcgat ttcgttcagg cgctgggtga
      301 tttcagcctg gatggagtcg aggtcagact gggagttagt accattcgca gactgaaccg
      361 ccagttcacg cacacgctgc aggttgttgt tgatttcgtt cagcgcgcct tcagtggtct
      421 gcgcaatgga gataccgtcg ttagcgttac gggaagcctg agtcagacct ttgatgttcg
      481 cggtaaaacg gttagcaatc gcctgtcctg ccgcatcgtc tttcgcgctg ttgatacgca
      541 gaccggaaga caaacgctcg atagcagtgc ccagtgcgga ctgggatttg ttcaggttat
      601 tctgggtcaa cagcgacagg ctgtttgtat taatgacttg tgccatgatc ttttccttat
      661 caattacaat ttgatgttat tgggctgttg cccacggttt ctcaccgtaa cccttgtatc
      721 ggcacctgaa tttcgaactt tagaaaattt ttcacttccc ccgatctttt tcttaggcgg
      781 cgaaatagcc gctttatgca tcattattcc gcgcattatt tttgcaaaat tatcattaaa
      841 ctttgcctcc agattgccga taacgcgctt aactactgtt tgcaatcaaa aaggaagaag
      901 gcatggcttc aatttcatca ttaggtgtgg gatcaaactt accgttagac cagttgttga
      961 cagacctgac aaagaacgaa aaaggacgct taacgccaat taccaaacag cagagcgcga
     1021 attcggcaaa gctaaccgcc tatggcacat tgaaaagcgc attagaaaaa ttccagacgg
     1081 caaataccgc gttaaataaa gcggatttat ttaagtctac cgtggcgtcc agcacgacag
     1141 aggacctcaa agtcagtact accgcaggcg ctgccgcagg gacttataag attagcgtaa
     1201 cccagcttgc cgccgcgcag tcgctggcga caaaaaccac cttcgcaacc accaaagagc
     1261 agttgggcga tacgtcggtc acatcccgga caattaaaat tgaacagccg ggacgtaaag
     1321 agccgctgga aattaagctg gataaaggcg acacctccat ggaggcgatc cgtgacgcca
     1381 ttaatgacgc cgacagcggt atcgccgcca gtatcgttaa ggtcaaagag aacgaattcc
     1441 agttggtgct taccgccaat agcggtaccg acaatacgat gaagatcacg gtggaaggcg
     1501 atacaaaact taacgatcta ctcgcttatg acagcaccac caataccggc aatatgcaag
     1561 agctggtgaa agcagaaaac gcgaagctga acgtaaacgg catcgacatt gagcgtcaga
     1621 gcaataccgt aaccgacgcc cctcagggaa ttacactcac cctgaccaag aaagtgaccg
     1681 acgcgaccgt gacggtgacg aaagatgata ccaaggcgaa agaggcgatt aaatcctggg
     1741 tggatgccta taactcgctg gtggatactt ttagctcatt aactaaatat accgccgttg
     1801 agccgggcga agaagccagc gataaaaacg gcgcgctgtt aggcgatagt gtggttcgtg
     1861 ctatccagac cgggattcgg gcacaatttg ccaatagcgg cagtaattct gcgttcaaaa
     1921 caatggcgga aattggcatc acccaggatg ggacttccgg caaactgaag attgacgatg
     1981 ataagctgac caaggtactg aaagataaca cggccgcagc gcgtgagctg ctggtaggcg
     2041 atggtaaaga aacgggtatc accaccaaaa ttgccaccga agtgaaaagt tatctggcgg
     2101 atgacggcat tattgataat gcgcaggaca acgttaacgc cacgctgaaa agcctgacaa
     2161 aacagtacct gtccgttagc aacagcatcg atgaaaccgt tgcccgttac aaggcccagt
     2221 ttacccaact ggataccatg atgagtaagc tgaataacac cagtagttat ttgacccagc
     2281 aatttacagc tatgaacaag tcctgataac agaggtcacc atgtacaccg cgagcggtat
     2341 caaagcttat gcgcaagtca gcgtggaaag cgccgtgatg agcgccagcc cgcatcagtt
     2401 gattgaaatg ttgtttgatg gcgcgaatag cgctctggtg cgcgctcgcc tgtttttaga
     2461 acaaggcgat gttgtcgcga aaggtgaagc gttaagcaaa gccatcaata ttatcgataa
     2521 cgggctgaaa gccggcctcg atcaggaaaa aggcggtgag attgcgacga atctttccga
     2581 gctatacgac tatatgattc gccgtttact gcaggctaat ttgcgtaacg acgctcaggc
     2641 catcgaagaa gtggaaaggt tactcagcaa tattgcagaa gcctggaagc agatttcacc
     2701 gaaagcatct ttccaggagt ctcgttaatg acctcaaccg tggagtttat caaccgttgg
     2761 cagcgtattg cgctgctcag tcaatcgctg cttgaacttg cgcagcgagg tgaatgggat
     2821 ctcttactgc aacaagaggt ctcctatctg caaagtattg aaacggtgat ggaaaagcaa
     2881 actccaccgg gcattacgcg aagtattcag gatatggtcg ccggatacat caaacaaacg
     2941 ctggataatg agcagctcct gaaagggctg ctgcaacagc gactggatga actgagtagt
     3001 ttgatcggac aatccacccg ccaaaaatca ctcaacaacg cttatggccg tctttccggt
     3061 atgttactcg tgccagacgc acctggcgcc tcataatatt ttcccgtctc gtatgaaaat
     3121 tcttccatac tccagaggtc ggctaaacga cttctggagc acggaagatg aaaaacccca
     3181 cgttattgca gtacttccac tggtattatc ccgacggagg aaaactctgg tctgagctgg
     3241 cggaacgtgc tgatgggctg aatgatatcg gtatcaatat ggtctggcta ccgcccgcct
     3301 gtaaaggcgc ctccggcggc tattccgtag gctatgatag ctacgacctg tttgacctcg
     3361 gcgaatttga ccaaaaagga actatcgcga caaagtacgg cgataaacgc cagttactga
     3421 cggcgataga cgcgctcaaa aaaaataata ttgcggtgct gctcgacgtc gtcgtgaacc
     3481 acaaaatggg cgcagacgaa aaagaacgta ttcgcgttca gcgcgtgaat caggatgacc
     3541 gcacgcaaat tgatgacaac atcattgaat gcgaaggctg gacgcgctac accttccctg
     3601 cccgcgcggg ccagtattcc aactttattt gggactatca ctgtttcagc ggcattgatc
     3661 acatcgagaa tcccgacgaa gacggcattt ttaagatcgt caatgactat accggcgatg
     3721 gctggaacga tcaggttgat gatgagctgg gtaatttcga ctatctgatg ggggaaaata
     3781 tcgattttcg caatcacgcg gttacggaag agattaaata ttgggctcgt tgggtcatgg
     3841 aacaaaccca ttgtgacggc tttcgcctgg acgcggtaaa acatataccc gcctggtttt
     3901 ataaagaatg gattgagcat gtacaggcgg ttgcgccaaa accgctgttt attgtcgcag
     3961 aatactggtc gcatgaagtg gataaactgc aaacgtacat cgatcaggcc gacgggaaaa
     4021 ccatgctgtt cgacgcgccg ttgcagatga aatttcatga agcctcgcgc cagggcgcgg
     4081 agtatgacat gcgccacatt ttcaccggca cgctggtaga agccgaccct tttcatgcgg
     4141 tgacgctggt cgctaaccac gatacacaac tgttacaggc gctggaagcg ccggtagaac
     4201 cctggttcaa accattggcc tatgcgctga tcctgcttcg tgaaaacggc gtaccgtcgg
     4261 tgttttatcc cgatttatac ggcgccagct atgaggataa cggcgaaaat ggcgagacct
     4321 gtcgggtcga catgccggtg attaaccaac tggatcggct gatcctcgct cgtcagcgtt
     4381 ttgcgcacgg tatacaaaca ctctttttcg atcatcccaa ctgtatcgcc tttagtcgca
     4441 gcggtactga agagaatcca ggctgtgtgg tcgtactttc caatggcgac gacggtgaaa
     4501 aaaccctcct gctcggcgac aattacgcta acaagacctg gcgtgatttt ctgggaaacc
     4561 gcagtgagca tgttgtaact aatgatcaag gcgaagcgac gttcttctgc aacgcaggca
     4621 gcgtcagcgt gtgggtcatt gaggacgtgt gatgagcgtt cccggcggca gagcgctgcc
     4681 gggaagcgaa attacggcag cggcgtcggc agcggcgttt tttctaacgc ggcggcgcac
     4741 tccggcgtcg gacgagcgac ccgttgcagc gtcatgccat catattccag ggtattcccg
     4801 tcgcgctcaa tctcatagag ctcacgctta accgtaacat tggttaagtc atcggagagc
     4861 atggtcagct tgcccggcag agcaataacg cgctgccact ggcggcagtc cagcgtatcg
     4921 ccttctttag tcaccaccag gctggcgata gcttcagggc tcaccagctt acgttgcggg
     4981 ccttttgact gccagtaccc ttccagaccg gccggcgcgg gcgttttcac cacatcatta
     5041 tagttttcca cctcggcgca tccggccaga accagcaatg cgccaacgat cgctactttt
     5101 ttcatcattc atcctgcatc agaagaaaga agaaagaaga aagaagaaag aagaaagaag
     5161 aaagaagaaa gaagaaagaa gaaagaagaa agaagaaaga agaattgtgg cattaaagcc
     5221 ctgacgccgc cagcctttcc aggcgctggc cgcaatttga tccagtcggt attaccgctt
     5281 attaggtgta ggcaaattct gtgatcggtg tagtatgcgc acttcttgtt tcacaccttc
     5341 tgagttcaga ggctaaacac atgtcatggc aacacttcaa gcaaacctgg ttaattaaat
     5401 tctgggcgcc ggcccctgcg gtgatcgcag ccggtattct ctctacctac tattttggca
     5461 tcaccggcac gttttgggcc gtgacgggcg aatttacccg ctggggcggg caaattttgc
     5521 agctttttgg cgttcatgcc gaacagtggg gctactacaa gctgattcat ctggaaggta
     5581 cgccgctgac gcgtatcgac ggcatgatga tcctcggcat gttcggcggc tgtttcgccg
     5641 cggcgctgtg ggccaacaac gtaaaactgc gtatgccgcg cagccgaatc cgtatcgtac
     5701 aggcggtggt cggaggcatg atcgctggct tcggcgcgcg tctggcgatg gggtgtaacc
     5761 tggccgcctt ttttaccggg atcccgcagt tctccctaca cgcgtggttc tttgcgctgg
     5821 cgaccgctat cggttcctgg ttcggcgccc gctttacgtt gctgccgata tttcgcatac
     5881 cggtgaaaat gcaaaaggtc tccgcggctt cgccactgac gcagaaaccg gatcaggcaa
     5941 gacggcgttt caggctcggt atgctggtct ttatcggcat gattggctgg gcgttattaa
     6001 cggcaatgca tcagccgaaa ctggggctgg cgatgctgtt cggcgtcggg tttgggctgc
     6061 tgatcgagcg cgcgcaaatc tgctttacct cggcctttcg cgatctgtgg atctccggac
     6121 gcgcccatat ggcgaaagcg attatttttg gcatggcggt cagcgccatt ggtattttca
     6181 gctacgtgca gttgggcgtt gcacctaaaa ttatgtgggc tggcccgaat gcggtcattg
     6241 gcggactgct gttcggtttt ggcatcgtgc tggcgggcgg ctgcgaaacc ggctggatgt
     6301 accgcgccgt agaagtccag gtgcattact ggtgggtggg cctcggcaat gtcatcggtt
     6361 cgaccatcct ggcttactac tgggatgatt tcgcgcccgc gctggcgacc agttgggata
     6421 aagttaacct gctgaatacc tttggtccgc tggggggtct gctggtcacc tatctgttgt
     6481 tatttaccgc gctgatgtta atcatcggct gggaaaaacg ttttttccgc cgtgcggggc
     6541 tgacgcctgc taaggaatct gtatgaaaaa tatcgtccct gattaccgtc tggatatggt
     6601 tggcgaacct tgcccgtacc cggcggtcgc cactctggaa gcgatgccgc agctaaaaaa
     6661 aggtgagatc ctggaagtgg tcagcgactg tccgcagtcc attaataata ttccactgga
     6721 tgcgcgcaat cacggttata cggtgctgga tattcagcag gatggcccga caattcgtta
     6781 tctgattcaa aaataagcgc atactcccgc tgtacgttac ggcgggagac cttttacggc
     6841 ataaccggca aaaatctaaa acgcataaaa gaaatcagac aaggtcgtc
//
LOCUS       DAJVSD010000236         6872 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.236, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000236 DAJVSD010000000
VERSION     DAJVSD010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6872)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6872)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6872
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.236"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            68..1143
                     /gene="citC"
                     /locus_tag="OQP62_003766"
                     /pseudo
     CDS             68..1143
                     /gene="citC"
                     /locus_tag="OQP62_003766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459616.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="[citrate (pro-3S)-lyase] ligase"
     gene            1140..1436
                     /gene="citD"
                     /locus_tag="OQP62_003767"
     CDS             1140..1436
                     /gene="citD"
                     /locus_tag="OQP62_003767"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase acyl carrier protein"
                     /protein_id="HCS1723193.1"
                     /translation="MKINQLAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGEA
                     IRATILEVLSRYDVRGVQLNVDDKGALDCILRARLETLLARASGIAALPWEDRQ"
     gene            1433..2341
                     /gene="citE"
                     /locus_tag="OQP62_003768"
     CDS             1433..2341
                     /gene="citE"
                     /locus_tag="OQP62_003768"
                     /EC_number="4.1.3.34"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (pro-3S)-lyase subunit beta"
                     /protein_id="HCS1723194.1"
                     /translation="MISASLQQRKTRTRRSMLFVPGANAAMVNNSFIYPADALMFDLE
                     DSVALREKDAARRLVYHALQHPLYRDVETIVRVNALDSEWGVNDLEAVVRGGADVVRL
                     PKTDTAQDVIDIENEILRIENACGREPGSTGLLAAVESPLGITRAVEIAHASERLIGI
                     ALGAEDYVRNLRTERSPEGTELLFARCAILQAARSAGIQAFDTVYSDANNEAGFLQEA
                     AHIKQLGFDGKSLINPRQIELLHNLYAPTRKEVAHARLVVEAAEAAAREGLGVVSLNG
                     KMVDSPVIERARLVLSRAELSGIREE"
     gene            2351..3880
                     /gene="citF"
                     /locus_tag="OQP62_003769"
     CDS             2351..3880
                     /gene="citF"
                     /locus_tag="OQP62_003769"
                     /EC_number="2.8.3.10"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase subunit alpha"
                     /protein_id="HCS1723195.1"
                     /translation="MTQKNESQRQDRVVAWSRHAESELSAYQSAAKLDLQAQKPRDHK
                     LCASLEEAIRRSGLRDGMTLSFHHAFRGGDLTINLVMETIAKMGFKNLTLASSSLSDC
                     HAPLVEHIRNGVVSRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNID
                     VAFLGVPSCDEFGNANGYTGKACCGSLGYAMVDADSAKQVVMLTEQLLPYPHNPASIA
                     QDQVDLIVQIEEVGDANKIGAGATRMTTNPRELLIARSAAEVIAHSGYFNEGFSLQTG
                     TGGASLAVTRFLEDKMRSRNIVANFALGGITATMVNLHEKGLIRKLLDVQSFDRNAAQ
                     SLARNPNHIEISANQYANWGSKGASVDRLDVVVLSALEVDTHFNVNVLTGSDGVLRGA
                     SGGHCDTAVAAALSIIVAPLVRGRIPTLVDNVTTCVTPGSSVDILVTDHGIAVNPARP
                     ELAERLKAAGMKVVSIEWLRERAQLLTGQPRPIEFTDRVIAVVRYRDGSVIDVVHQVK
                     E"
     gene            3883..4329
                     /gene="citX"
                     /locus_tag="OQP62_003770"
                     /pseudo
     CDS             3883..4329
                     /gene="citX"
                     /locus_tag="OQP62_003770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459612.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase holo-[acyl-carrier protein]
                     synthase"
     gene            4301..5197
                     /gene="citG"
                     /locus_tag="OQP62_003771"
     CDS             4301..5197
                     /gene="citG"
                     /locus_tag="OQP62_003771"
                     /EC_number="2.4.2.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triphosphoribosyl-dephospho-CoA synthase CitG"
                     /protein_id="HCS1723196.1"
                     /translation="MMPIPVNPTNASIQPQSLYDAWADLAWRAMLTEVNLSPKPGLVD
                     RLNCGAHKDMALADFHRSAEAIRHWLPRFMEYGASCTRLPPESVLAGLRPLGMACEAA
                     MFRATAGVNTHKGSIFSLGLLCAAIGRLYQLRQPIAAETLCATAADFCRGLTTRELRQ
                     NNLQLTAGQRLYQQLGLTGARGEAEAGYPLVIRHALPHYRALLAQGRDPELALLDTLL
                     LLMSLNGDTNVASRGGADGLRWLQQQAAVLLHQGGIRTPDDLVYLHRFDQQCIERNLS
                     PGGSADLLIVTWFLAQISQVNH"
     gene            5235..6788
                     /locus_tag="OQP62_003772"
     CDS             5235..6788
                     /locus_tag="OQP62_003772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HCS1723197.1"
                     /translation="MSLSKDNIWKLLAPLVVMGVMLLIPVPDGMPPQAWHYFAVFVAM
                     IVGMILEPIPATAISFIAVTICVIGSNYLLFDASELADPAFKASKQALKWGLAGFSST
                     TVWLVFGAFIFALGYEVTGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNT
                     ARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVL
                     GLEFVSKIAGVQISWLQWFLSFLPVGIILLIVAPWLSYVLYKPEVTHSAEVAAWAGGE
                     LKNMGRLSRKEWTLIGLVLLSLGLWVFGGKIINATAVGLLAVSLMLALHVVPWKDITR
                     YNSAWNTLVNLATLVVMANGLTRSGFIDWFANTMSTHLEGFSPDATVIVLVLVLVLVL
                     VLVLVLVLVLVLVLVLVLVLVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVP
                     MEQLCILLVLSIGIMGCLTPYATGPGVIIYGCGYVKSRDYWRLGAIFGVIYIAMLLLV
                     GWPILAMWN"
BASE COUNT         1440 a         1943 c         1931 g         1558 t
ORIGIN      
        1 aagttgcaac acaacgcaac atatacagaa aagtggcaac aagcatatca ccaggatatt
       61 tcttactatg tttggcaata atgtattcac tcgggtaaaa cgctctgaaa ataaaaaatg
      121 gcggagatcg ctcactttct caaagagaat gatttaagcg tcgataccac tgtagaagtg
      181 tttattaccg tcagccgtga tgaccgtctt attgcctgcg gcggtattgc cggaaatatc
      241 attaaatgcg tggccattag cgaatcagta cgcggtgaag gcttagcgtt aacgctggcg
      301 acggaattga ttaatctcgc ctgggaacgg cactgcaccc atctttttat ttataccaaa
      361 acggaatacg aagcgctgtt taaacagtgc agcttttcga cgatagccag cgtccctggc
      421 gtgatggtct taatggaaaa tagcgcgacc cggttgaaac ggtatgcgga atcgctggcg
      481 acattgcgtc acgagggaaa gaaaattggc tgtattgtga tgaacgccaa tcctttcacg
      541 cacggccatc gctatctgat ccaacaggcg gcggcacagt gcgactggct gcatctgttc
      601 ctggtcaaag aagatacgtc acgctttccc tatgaagacc gactcgatct ggtccttaaa
      661 gggactaccg atatcccgcg cttaaccgtt catcgcggct ccgaatacat tatttctcgt
      721 gcgacgttcc cctgctattt cattaaagag cagagcgtca ttaatcactg ttataccgaa
      781 atcgacctga agattttccg ccagtatctg gcgcccgcgc ttggcatcac acaccgcttt
      841 gtcggtacgg agccgttttg taccgttacc gcccagtaca accttgatat gcgtttctgg
      901 ctggagacgc caacgcttcc cgccccaccc attacgctgg tggaaataga gcggctttgc
      961 ttccaggaga cgccgatatc cgcctcctgg gtacgcaagc tgctggttaa acacgatctc
     1021 acggctatcg cgccgctggt tcccgacgcc accctgcgct atttgcaggg catggtcgaa
     1081 cgccatccgg gcagcgcggc agcccgtcaa aagtcccccg tattagcaac aggtgaaaaa
     1141 tgaaaataaa ccagctagcc gtcgcaggca cgcttgagtc cggcgatgtg atgatacgca
     1201 ttgcgccgct cgatacgcag gatattgacc tgcaaattaa cagtagcgtt gaaaaacagt
     1261 ttggcgaggc cattcgcgcc accatcctgg aggtgctttc tcgctacgac gtgcgcggcg
     1321 tacaactgaa cgtcgatgat aaaggcgctc tggactgcat tttgcgcgcc cgactggaaa
     1381 cgctactggc gcgcgccagc ggtattgccg ctctgccctg ggaggatcgc caatgatttc
     1441 cgcctctctg caacaacgta aaacccgcac ccgccgcagt atgttattcg taccgggcgc
     1501 caacgcggcg atggtgaaca attcgtttat ctacccggcc gacgcgctga tgttcgacct
     1561 ggaagactcc gttgcattac gcgaaaaaga cgcggcgcgc cgtctggtat atcacgcgct
     1621 gcaacatccg ctttaccgtg acgtcgaaac catcgtccgc gtgaatgcgc tggactccga
     1681 atggggcgtc aacgatctgg aagcggtcgt gcgcggcggc gcggacgtgg tgcgtttacc
     1741 gaaaaccgac accgcgcagg acgtcattga tatcgaaaac gaaattctgc gcattgaaaa
     1801 cgcctgcggt cgcgaaccgg gcagtaccgg cctgttagcc gccgtggaat cgccgctggg
     1861 tattacccgc gcggtagaaa tcgcccacgc ctctgaacgg ttgatcggga ttgcgctggg
     1921 cgcggaagac tatgttcgca acctgcgcac cgaacgctct ccggaaggca ccgaactgct
     1981 gttcgcccgc tgcgccattt tgcaggccgc gcgttccgcc ggcattcagg ccttcgatac
     2041 cgtctattcc gacgccaaca acgaagccgg tttcctgcaa gaagccgccc acattaaaca
     2101 gttgggcttt gacggtaagt cactgatcaa cccccgccag atagaactgc tgcacaacct
     2161 ttatgcgccg acgcgtaaag aggtcgccca tgcgcgtctg gtcgttgagg ccgcagaagc
     2221 cgccgcccgc gaaggtctcg gcgtcgtttc ccttaacggc aagatggtcg acagcccggt
     2281 gattgaacgc gcccgtctgg tgctctcccg tgcagaactt tccggtattc gcgaagaata
     2341 aggcaaaaaa atgacgcaga aaaatgaatc tcaacgccag gatcgcgtag tagcctggag
     2401 ccgtcacgct gaaagcgaac tgagcgctta ccaaagtgcg gcaaaattgg atctacaagc
     2461 gcaaaaaccg cgcgaccaca aactgtgcgc cagcctggaa gaggccatcc gccgttccgg
     2521 tttacgcgac ggcatgacgc tttcctttca ccacgctttt cgcggcggcg atctgacgat
     2581 taacctggtg atggaaacca tcgcgaagat gggcttcaaa aatctgaccc tggcctccag
     2641 ctcgctgagc gactgccacg cgccgctggt tgaacacatt cgtaacgggg tggtcagccg
     2701 catctacacg tcaggcctgc gcggcccgct ggcggaagaa atttctcgcg gcctgctggc
     2761 tgagccggtt cagattcact cccacggcgg tcgtgtgcat ctggtacaaa gcggcgaact
     2821 caatattgat gttgcgtttc ttggcgtgcc ctcctgcgat gaattcggta atgctaacgg
     2881 ttataccggc aaagcctgtt gcggttctct gggctacgcg atggtggatg ccgacagcgc
     2941 gaagcaggtc gtgatgctga cggagcaact gctgccgtat ccgcataacc cggcaagcat
     3001 cgctcaggat caggttgatc tgatcgtgca aatcgaagaa gtcggtgatg caaacaaaat
     3061 cggcgctggc gcgacccgca tgaccactaa tccgcgtgaa ctgctgatcg cccgcagcgc
     3121 ggcggaagtc attgctcact ccggctactt caacgaaggt ttctccctgc aaaccggcac
     3181 cggcggcgca tcgctggcgg tcacccgctt cctggaagac aaaatgcgta gccgcaacat
     3241 tgtggctaat ttcgcgctgg gcggtatcac cgccaccatg gtcaacctgc atgaaaaggg
     3301 cttaatccgc aaactgcttg acgtgcagag cttcgatcgt aacgctgcgc aatctttggc
     3361 ccgcaacccg aaccatatcg aaatcagcgc taaccagtac gccaactggg gctctaaagg
     3421 cgcttccgtc gaccgtctgg acgtggtggt actgagcgcg ctggaagtag acacccactt
     3481 caatgttaac gtgctgaccg gctccgacgg cgttctacgc ggcgcgtccg gcggtcactg
     3541 cgataccgcc gtcgcggcgg cgctgtccat catcgtcgcg ccgctggtgc gcggtcgcat
     3601 cccaacgctg gttgataacg tcaccacctg cgtcacaccg ggctccagcg ttgacattct
     3661 ggtcaccgat cacggtatcg ccgtcaatcc ggcgcgtccg gagttggctg aacgcctgaa
     3721 agcagcggga atgaaagtgg tatcgattga gtggctgcgc gaacgcgcgc aactgcttac
     3781 cggtcagccc cgccctatcg aattcaccga ccgcgtgatt gctgtcgtgc gttatcgcga
     3841 cggttcagtg atcgatgtgg tgcatcaggt gaaggaataa gccacgccac tccactggtc
     3901 tcctttaccg tggtggcgcc aggcccgatg aaagacagcg cgttaacccg ccggatcttt
     3961 aatcacggcg tgactgccct gcacacgctg gcagaagagt atggctggac catccgggag
     4021 caggctgcac tggcttccgc cagcgggccg gaagggttgc tggcgattga cgcgcccgct
     4081 caggcgctca aacaggcgac catcgcgctg gaacagcgtt atccactggg gcgcctgtgg
     4141 gatatcgatg tcctgacggc ggaaggcgaa atactctctc gccgccattt cgcgcttccc
     4201 gctcgccgct gtctgctgtg cgggcaaagc gcggctgaat gcgcgcgggg taaaacccac
     4261 gcgctgactg atttactgac tcatatggag gcgctgctgc atgatgccga ttcccgtcaa
     4321 cccgactaac gcctccattc agcctcagtc gctgtatgac gcctgggccg atttggcctg
     4381 gcgcgccatg ctgaccgagg taaatttatc gccaaaaccc ggtctggtag accgactaaa
     4441 ctgcggcgcg cacaaagata tggcgctggc ggattttcac cgcagcgcgg aggcgattcg
     4501 acactggctg ccgcgcttta tggaatatgg cgccagctgc acgcgcctgc caccagagtc
     4561 agttctggcg ggcctgcgtc cattggggat ggcctgtgaa gcagcgatgt ttcgcgcaac
     4621 ggcgggcgtc aatacccata aaggcagcat tttctcgctg gggttactgt gcgccgccat
     4681 tggccgcctg tatcagctac gccagccgat cgccgcagaa acactctgcg ctaccgccgc
     4741 cgatttttgc cgcggcctga ccacgcgcga actgcgccag aacaacctac agctcaccgc
     4801 aggccagcgg ctgtatcagc aactgggatt aaccggcgcg cgcggtgaag cggaagcggg
     4861 ctatccgctg gtcatccgcc acgcgttgcc gcactaccgc gcattgctgg cgcaggggcg
     4921 cgatccggaa ctggcgctgc ttgatacctt actgctgctg atgtcgctta acggcgatac
     4981 caacgtcgct tcgcgcggcg gggcggacgg tctgcgctgg ttacagcagc aggcggcggt
     5041 cttattacat cagggcggca tacggacgcc tgatgatctc gtttatctcc accggttcga
     5101 tcagcaatgc attgaacgca atctcagccc aggcggtagc gccgatctgc tgatcgtgac
     5161 ctggttttta gcgcaaattt cgcaagttaa tcattaacac aattatagaa aatatccttt
     5221 ccggagagtc atttatgtct ttatccaaag ataatatatg gaagttgttg gccccattag
     5281 tggtgatggg cgtcatgttg ctaattcctg ttccagatgg tatgccgccg caggcctggc
     5341 actattttgc ggttttcgtc gcgatgattg tcggtatgat cctggagccg atcccggcga
     5401 cagcgatcag ttttatcgcc gtaaccattt gcgttatcgg cagcaattac ctgctatttg
     5461 acgcttcaga actggccgat ccggcgttta aagccagtaa acaggcgctg aaatgggggc
     5521 ttgccggttt ctccagcacc acggtctggc tggttttcgg cgcgtttatt ttcgcgctgg
     5581 gctacgaagt gaccggactg gggcgccgca ttgcgctgtt tctggtaaaa ttcatgggta
     5641 aacgcacgct gacgctcggc tatgcgattg tcattatcga tattttgctg gcgccgttta
     5701 ctccctccaa tacggctcgt accggcggga ctgtcttccc ggttatcaag aacctgccgc
     5761 cgctgtttaa atcgtttcca aacgatcctt ccgcacgccg catcggcggt tatttgatgt
     5821 ggatgatggt gatcagtacc agcctgagct cttcgatgtt tgtcactggc gcggcgccaa
     5881 acgtgttagg tctggagttc gtcagcaaga tcgccggggt ccagattagc tggctgcagt
     5941 ggtttctcag ctttctgccg gtagggatta ttttactgat cgttgcgccg tggctctcct
     6001 atgtgcttta taaacctgaa gtgacccaca gtgcggaagt cgcggcctgg gctggcggcg
     6061 agttaaaaaa catggggcgt ctgtcccgca aagagtggac gctgattggc ctggtgctgc
     6121 ttagcttagg attgtgggtt tttggtggaa aaatcatcaa cgccactgcc gtgggtctgc
     6181 tggccgtctc gctgatgctg gcgctgcatg ttgtgccgtg gaaagatatt acgcgctaca
     6241 acagcgcctg gaacaccctg gtgaacctcg ctacgctggt ggtcatggcc aatggcttaa
     6301 cccgctccgg ctttattgac tggttcgcca ataccatgag tacgcatctg gaaggtttct
     6361 cgccggatgc aaccgtcatt gtactggtac tggtactggt actggtactg gtactggtac
     6421 tggtactggt actggtactg gtactggtac tggtactggt actggtactg gtactggtac
     6481 tggtattcta tttcgcgcac tatttgttcg ccagtctttc cgctcacacc gcgaccatgc
     6541 tgccggtcat tctggcggtg ggtaaaggca ttccgggcgt tccgatggaa caactgtgta
     6601 ttctgctggt gctgtctatc ggtatcatgg gctgtctgac gccgtatgcc accggccctg
     6661 gtgtgattat ctacggctgc ggttacgtga aatccagaga ctactggcgg cttggcgcaa
     6721 tctttggcgt tatctatatc gcaatgctgt tgctggtggg ctggccgatt ctggcaatgt
     6781 ggaattaaac attacgccaa cgtaggttaa aaatgatgcc gttcaggttc acctgagcgg
     6841 cattttttat gattaaatga gtaacattca ta
//
LOCUS       DAJVSD010000237         6839 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.237, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000237 DAJVSD010000000
VERSION     DAJVSD010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6839
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.237"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(71..520)
                     /gene="rplI"
                     /locus_tag="OQP62_003773"
     CDS             complement(71..520)
                     /gene="rplI"
                     /locus_tag="OQP62_003773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HCS1723198.1"
                     /translation="MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNV
                     EYFEARRAELEAKLADVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADA
                     VTAAGVDVAKSEVRLPNGVLRTTGEHEVNFQVHSEVFAKVIINVVAE"
     gene            complement(562..789)
                     /gene="rpsR"
                     /locus_tag="OQP62_003774"
     CDS             complement(562..789)
                     /gene="rpsR"
                     /locus_tag="OQP62_003774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012986941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HCS1723199.1"
                     /translation="MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRI
                     TGTRAKYQRQLARAIKRARYLSLLPYTDRHQ"
     gene            complement(794..1108)
                     /gene="priB"
                     /locus_tag="OQP62_003775"
     CDS             complement(794..1108)
                     /gene="priB"
                     /locus_tag="OQP62_003775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HCS1723200.1"
                     /translation="MTNRLTLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHR
                     QAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS
                     GD"
     gene            complement(1115..1510)
                     /gene="rpsF"
                     /locus_tag="OQP62_003776"
     CDS             complement(1115..1510)
                     /gene="rpsF"
                     /locus_tag="OQP62_003776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HCS1723201.1"
                     /translation="MRHYEIVFMVHPDQSEQVPGMIERYSAAITGAEGKIHRLEDWGR
                     RQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPM
                     VKAKDERRERRDDFANETADDAEAGDSEE"
     gene            complement(1581..1787)
                     /locus_tag="OQP62_003777"
     CDS             complement(1581..1787)
                     /locus_tag="OQP62_003777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723202.1"
                     /translation="MWQKSTLTTVSIFLPQQAVYSGMRYEVNISAAKCDGTGVTFGTI
                     NNCTITLSLPAGASIITRHFSADL"
     gene            1981..2256
                     /locus_tag="OQP62_003778"
     CDS             1981..2256
                     /locus_tag="OQP62_003778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1723203.1"
                     /translation="MRARIMLFLAALLPGITATAAIELNNHQATNMDDVRSLGVIYIN
                     HNFATESEANLALNDEADARNAMYYHAILIREPGSNGNIHASANIYR"
     gene            complement(2386..3072)
                     /locus_tag="OQP62_003779"
     CDS             complement(2386..3072)
                     /locus_tag="OQP62_003779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HCS1723204.1"
                     /translation="MQKLKQQVFDANMDLPRYGLVTFTWGNVSAIDRERGLVVIKPSG
                     VAYETMKVDDMVVVDMDGKVVEGRYRPSSDTATHLALYQRYPSLGGVVHTHSTHATAW
                     AQAGMAIPALGTTHADYFFGDIPCTRALSEEEVQGEYELNTGKVIIETLGEVEPLHTP
                     GIVVYQHGPFAWGKDAHDAVHNAVVMEEVARMAWIARGINPGLNPIDDYLMNKHFMRK
                     HGPNAYYGQK"
     gene            complement(3072..3926)
                     /gene="ulaE"
                     /locus_tag="OQP62_003780"
     CDS             complement(3072..3926)
                     /gene="ulaE"
                     /locus_tag="OQP62_003780"
                     /EC_number="5.1.3.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase UlaE"
                     /protein_id="HCS1723205.1"
                     /translation="MLSKQIPLGIYEKALPAGECWLERLRLAKTLGFDFVEMSVDETD
                     ARLARLDWSREQRLALVSAVAETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKA
                     IQFAQDVGIRVIQLAGYDVYYQQANDETRCRFRDGLKESVDMASRAQVTLAMEIMDYP
                     LMNSISKALGYAHYLNNPCFQLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPG
                     VFKNVPFGEGVVDFERCFETLKQSGYCGPYLIEMWSETAENPAAEVAKARDWVKARMA
                     KAGMVEAA"
     gene            complement(3936..4586)
                     /gene="ulaD"
                     /locus_tag="OQP62_003781"
     CDS             complement(3936..4586)
                     /gene="ulaD"
                     /locus_tag="OQP62_003781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HCS1723206.1"
                     /translation="MSLPMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGV
                     RAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVA
                     KEFNGDVQIELTGYWTWEQAQQWRDAGIQQVVYHRSCDAQAAGVAWGEADITAIKRLS
                     DMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAESPVEAARQFKRSIAQLWG"
     gene            complement(4600..5064)
                     /gene="ulaC"
                     /locus_tag="OQP62_003782"
     CDS             complement(4600..5064)
                     /gene="ulaC"
                     /locus_tag="OQP62_003782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIA"
                     /protein_id="HCS1723207.1"
                     /translation="MKLRDSLAENNSIRLQAEANTWQEAVKIGVDLLVAADVVEPRYY
                     QAILDGVEQFGPYFVIAPGLVMPHGRPEEGVKKTGFSLVTLKKPLEFNHEDNDPVDIL
                     ITMAAVDANTHQEVGIMQIVNLFEDEANFDRLRACRTAQEVLDLIDRTNAAA"
     gene            complement(5074..5378)
                     /gene="ulaB"
                     /locus_tag="OQP62_003783"
                     /pseudo
     CDS             complement(5074..5378)
                     /gene="ulaB"
                     /locus_tag="OQP62_003783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710059.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIB"
     gene            complement(5394..6791)
                     /gene="ulaA"
                     /locus_tag="OQP62_003784"
     CDS             complement(5394..6791)
                     /gene="ulaA"
                     /locus_tag="OQP62_003784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418614.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HCS1723208.1"
                     /translation="MEILYNIFTIFFNQVMTNAPLLLGIVTCLGYILLRKSVSVIIKG
                     TIKTIIGFMLLQAGSGILTSTFKPVVAKMSEVYGINGAISDTYASMMATIERMGDAYS
                     WVGYAVLLALALNICYVLLRRITGIRTIMLTGHIMFQQAGLIAVSFYIFGYSMWTTII
                     CTAILVSLYWGITSNMMYKPTQEVTDGCGFSIGHQQQFASWIAYKVAPFLGKKEESVE
                     DLKLPGWLNIFHDNIVSTAIVMTIFFGAILLSFGIDTVQAMAGKVHWTVYILQTGFSF
                     AVAIFIITQGVRMFVAELSEAFNGISQRLIPGAVLAIDCAAIYSFAPNAVVWGFMWGT
                     IGQLIAVGILVACGSSILIIPGFIPMFFSNATIGVFANHFGGWRAALKICLVMGMIEI
                     FGCVWAVKLTGMSAWMGMADWSILAPPMMQGFFSIGIAFMAVIIVIALAYMFFAGRAL
                     RAEEDAEKQLAEQSA"
BASE COUNT         1626 a         1924 c         1713 g         1576 t
ORIGIN      
        1 atggagttaa aaaagcaaaa cgccggcgct gggccgacgt ttcgttgcta gcaaaaacga
       61 gaatgactga ttactcagca accacgttga tgataacttt tgcgaatact tcgctgtgaa
      121 cctggaagtt cacttcgtgt tcgccagtgg tacgcagaac gccgttcggc agacgaactt
      181 cgctcttagc cacgtcaacg ccagctgcag tcacagcgtc agcgatgtcg cgagtaccga
      241 tggaaccgaa cagtttacct tcgtcgcctg ctttagacgc gatagtaacg gtttccaggg
      301 cgttgatttt ctctgcgcgt gcatttgcag cagccagaac gtcagccagt ttagcttcca
      361 gttcagcgcg acgtgcttcg aagtattcaa cgtttttctt ggtagccgga acagctttac
      421 cctgtggtac caggaagtta cgagcatagc ccgctttaac gttaacctga tcacccaggc
      481 tacccaggtt tgctacttta tcaagcagaa taacttgcat taccttatcc tctcaaagtc
      541 gtattaatgg accgtgaccg attactgatg gcgatcagtg tacggcagca gagacaggta
      601 gcgagcgcgt ttgatagcgc gagccagctg acgctggtat tttgcacggg taccggtgat
      661 acggcttggg acaatcttac cgctttcggt gatgtagttt ttcagcgtag cgatatcttt
      721 atagtcgatc tcttgaacgc cttccgcggt gaaacggcag aacttgcgac gacggaaata
      781 acgtgccata tggctagtct ccagaatcta tcaattcaat ctgctcggca tgcagaacca
      841 ttttgctcag accgttcttt gccttgtggc aagaaataaa cccctgaacg gttatgcggc
      901 tgccgaccgt tatactgtga gtaatggcct ggttttcgtg tccgctaaca ataacgggca
      961 tttggcacca cgcctgccgg tgaaagccgg cttcctcttg cacagaacga tgctcaagca
     1021 cgaactggca atgcggaatt cctgatggac tgacctttcg aaggggggcc ctgcacacgg
     1081 tgccggacaa cgtcagacgg ttggtcatca gaaattactc ttcagaatcc ccagcttcag
     1141 catcatctgc ggtttcgtta gcgaaatcat cgcgacgctc acggcgctcg tctttcgctt
     1201 taaccatcgg agatgcttcg gtaacagcgt gcttagtacg cataaccatg ctgcggataa
     1261 cggcatcgtt gaagcggaag gtagtttcca gctcatcgat cacttcctgc ggcgcttcaa
     1321 cgttcatcag aacgtagtgc gctttgtgca gtttgttgat cgggtaagcc agctgacggc
     1381 ggccccagtc ttccagacgg tggatcttgc cttctgcgcc agtgatggca gcagagtaac
     1441 gctcgatcat acccggaacc tgttcgctct ggtcaggatg gaccataaaa acgatttcgt
     1501 aatgacgcat cgaattgctc cttacggatt attcagcctc ctgtctgggt cagccgcggc
     1561 ccatggaggc aaggaacgtg ttaaaggtcg gctgaaaaat gacgcgttat aatactggcg
     1621 cctgcgggca aactcaaggt gattgtacaa ttatttatcg tgccgaacgt aacgcctgtc
     1681 ccgtcacatt ttgctgctga gatattaact tcatatcgca tgccactata aacggcctgt
     1741 tgcggcagaa aaattgacac tgtggtcagc gtactttttt gccacacagg gtttcttaaa
     1801 catagcggca tacatcaacg ggttgttaat caggtaaaaa acgacaatgc gataattttt
     1861 tgaacaacag catcagaaaa ggtcgccatc tctgcggctg gttatggtta aaattaaacc
     1921 agaagcgatt cactaaaggg ggatatcgcc aaccagaccg cgctgctgag gaggtactct
     1981 atgcgagccc ggataatgtt atttctggct gcgcttttgc ctggcataac ggcaacggca
     2041 gccatcgagt taaataatca ccaggccaca aatatggatg atgtgcgcag cttaggcgtg
     2101 atctacatca accataactt cgccacggaa agcgaagcca atctggcgct gaatgacgag
     2161 gccgacgcgc gaaacgcaat gtattatcac gccatactta tccgggaacc gggtagcaac
     2221 ggcaacatac acgccagcgc gaatatttat cgctaacatc aggaaaacca acgaaaaagc
     2281 catagttgat ttgcccccct gaacaggggg cttttttcgc ggaaagatgg ctccggaatt
     2341 agacctgtga catcccgata atattcacat tccggagctc atacttcact tctgcccgta
     2401 atacgcattc gggccatgct tacgcatgaa gtgtttattc atcagataat cgtcgatggg
     2461 gttgaggcca gggttaatgc cgcgcgcaat ccacgccatt ctcgccactt cttccatgac
     2521 gaccgcgtta tgtaccgcat cgtgcgcatc tttcccccag gcgaacggcc cgtgttgata
     2581 cacgacaatg cctggcgtat gcagcggttc cacctcgccc agcgtttcga tgatcacctt
     2641 gccggtgttc agctcgtact cgccctgcac ttcttcttcg cttaacgccc tggtacaagg
     2701 aatatcgcca aagaaatagt ccgcgtgcgt ggtaccgagc gctggaatag ccatccccgc
     2761 ctgcgcccat gccgtggcgt gggttgaatg ggtatgaacg acgccgccaa gcgacggata
     2821 gcgttgatac agcgccagat gggtagcggt atcggaagaa ggacgataac gaccctccac
     2881 cactttgcca tccatatcca ccaccaccat gtcatctacc ttcatggttt cataggcgac
     2941 accgcttggc ttaatcacca ccagcccgcg ttcgcgatcg atagcgctga cgttgcccca
     3001 ggtaaacgtc accagtccat aacggggcaa atccatgtta gcgtcaaata cctgctgctt
     3061 gagcttttgc attatgccgc ctccaccatg cctgctttgg ccatgcgcgc tttcacccag
     3121 tcacgcgctt tcgctacctc tgccgccggg ttctctgctg tttcgctcca catctcaatc
     3181 agatagggcc cgcaatagcc actctgtttg agcgtttcga agcagcgttc gaaatcgaca
     3241 acgccttcgc caaacggcac atttttgaac acgccgggtt tagtatcttt gacgtgtacc
     3301 gcgacgatat gcccgattcc cgcctgtagc tccatctgta cgtcgttatc ccaggcagac
     3361 agattgccga tatccggata gagctgaaag cacgggttat tgaggtagtg agcatagcct
     3421 agcgctttac tgatggaatt catcaatggg taatccatga tctccatcgc cagcgtcacc
     3481 tgggcgcggc tggccatatc aacgctctct tttaacccat cgcggaagcg gcaacgcgtt
     3541 tcgtcgttgg cctgctgata gtaaacgtcg taccccgcca gttgaatgac gcgaatcccg
     3601 acgtcctgcg caaactgaat cgctttacgc ataatctcca gcccctgcgc ccgtaccgcg
     3661 tcatcttcgc taccgagcgg aaaacgacga tgcgcgctca gacacatgga cggcacacgc
     3721 acgccggttt cagcaaccgc gctcaccagc gccaggcgct gctcgcgact ccagtcgagc
     3781 cgcgccagtc gggcgtcggt ctcgtccacc gacatttcaa cgaagtcaaa acccagcgtt
     3841 ttcgccagcc gcaggcgttc cagccagcac tccccggcag ggagcgcttt ttcatagatg
     3901 ccgagcggaa tttgtttcga cagcatagcc gctccttagc cccacagttg ggcaatggag
     3961 cgtttgaact gccgtgcggc ttctaccggc gattcagcat cgcgaatgct gcggccagca
     4021 ataaagacat ggatcggaat gcctttgaac agcggcaggt cttccagcgc cagtccgccg
     4081 gtcacggtca ctttaaagcc catatcggac agccgtttaa tcgcagtaat atccgcttca
     4141 ccccacgcca cgcctgcggc ctgcgcgtcg cagctgcggt ggtaaaccac ttgctgaatg
     4201 cccgcatcgc gccactgctg cgcctgttcc caggtccagt aaccggtcag ttcaatctgc
     4261 acgtcgccgt taaactcttt tgccacatcc agcgcgcctt tcgcggtgtt gatatccgca
     4321 cagcaaatca cggtcaccca gtccgcgttg gcttcgaagc acatacgaga aaggattttg
     4381 cccgcatcgg caattttggc atctgccagc acgattttgt gcgggtaaag cgctttcaga
     4441 tcgcgaaccg cacgcacgcc ttcgcccacg cacagaatgg tgcccacttc gataatgtcg
     4501 acttcttcgg caatcaggcg agtggtttcg taggcgctat ccatagtctg gttgtccagc
     4561 gcgacttgca acatcggtaa tgacatgttc aattccttct taagctgccg cgttggtgcg
     4621 gtcaatgaga tccaggactt cctgcgcggt acggcaggcg cgtaaacggt caaaattggc
     4681 ttcgtcttca aacaggttga cgatctgcat gatgcccact tcctggtgag tgttggcatc
     4741 aaccgccgcc atagtgatca gaatatcgac cgggtcgtta tcttcgtggt tgaactccag
     4801 cggctttttc agcgtcacca gtgagaaacc ggttttcttc acgccctctt ccggacgccc
     4861 gtgcggcatt accagccccg gagcgataac gaaataaggg ccgaactgtt ccacgccatc
     4921 gagaatcgcc tggtagtaac gcggctcgac aacgtctgcc gccaccagca aatccacacc
     4981 aatttttacg gcttcctgcc aggtattagc ttcagcctgc aagcggatag aattattctc
     5041 cgccagcgaa tcacgtaatt tcatgttgcg tccttacttc acgtcctgtg gaaaatgcgc
     5101 tttgatcact tccagcaatt tcgggccgaa gtctgcgggc gatagcatgt tgcgcacgcc
     5161 aaccacatat ttgttgcccg tcacggtgat ttcgcctgca atgtgtgtgg aagcgatgat
     5221 gatatccgcg ccgctcaact cgcttttgta ctcgccaacc gcgcagctgt ttaccgtgtg
     5281 gtcgatattg gattgggtta aaactggtcc actttcattt tcatgatcat ggaactgccc
     5341 tgtccgttgc cacacacagc cagaatacgt acggtcataa tcaaaactcc ttattaagca
     5401 gactgttctg ccagttgttt ttctgcatct tcttctgcgc gcagtgcgcg gccagcgaag
     5461 aacatataag ccagtgcaat tacaatgatg acggccataa aggcgatacc gatggagaag
     5521 aagccctgca tcatcggcgg cgccagaatc gaccagtccg ccatacccat ccaggcgctc
     5581 atccccgtga gtttcaccgc ccagacgcaa ccaaagattt caatcatccc catcaccaga
     5641 caaattttca gcgccgcacg ccagccgccg aagtggttag cgaacacgcc gatagtggcg
     5701 ttagagaaga acatcgggat aaagccagga ataatcagga tcgaggagcc gcaggcaacc
     5761 aggatgccaa ccgcaatcag ctgaccgatg gtgccccaca taaagcccca gactacggcg
     5821 ttcggcgcga agctatagat agccgcacag tcaatcgcca gaaccgcacc tgggatcagg
     5881 cgctgggaga taccgttaaa cgcttcagag agttccgcca caaacatgcg cacgccctga
     5941 gtgatgatga agatcgccac cgcaaaggag aaaccggttt gcaggatgta gaccgtccag
     6001 tgcactttgc ccgccatcgc ctgcacggtg tcgataccga aggagagcag aatggcacca
     6061 aagaagatgg tcattacaat cgccgtagaa acgatgttgt cgtggaagat attcagccag
     6121 cccggcaatt tgaggtcttc aacgctttcc tcttttttgc ccaggaacgg cgcgacttta
     6181 taggcaatcc aggaagcaaa ctgctgctgg tgaccaatgg agaaaccgca gccgtccgtc
     6241 acttcttggg tgggcttata catcatgttg gaagtgatgc cccagtacag ggaaaccagt
     6301 atcgccgtgc agataatggt ggtccacatg gaatagccga agatatagaa agagaccgca
     6361 atcagccccg cctgctggaa catgatgtgc ccggtcaaca tgatggtgcg aataccggta
     6421 atgcgtcgca ataagacgta acaaatattc agcgccagcg cgagcaacac cgcgtagcct
     6481 acccaactat acgcatcgcc catccgttcg atcgttgcca tcatcgaagc ataggtatcg
     6541 gaaatcgcgc cgttgatacc gtagacctca gacattttcg ccaccaccgg tttaaaggtg
     6601 ctggtcagaa tgccggaccc ggcctgtagc agcatgaagc caatgatggt tttgatcgtc
     6661 cctttgatga tcacgctgac gcttttgcgc aacaggatat agcccaggca ggtcacaata
     6721 cccagtaata gcggggcatt agtcattacc tgattaaaga aaatggtaaa gatgttgtag
     6781 aggatctcca taacgatctc cggcagataa ggttgctgag tcacaggcgc tcaggataa
//
LOCUS       DAJVSD010000238         6777 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.238, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000238 DAJVSD010000000
VERSION     DAJVSD010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6777
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.238"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            12..191
                     /locus_tag="OQP62_003785"
     CDS             12..191
                     /locus_tag="OQP62_003785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001786072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hin recombinase"
                     /protein_id="HCS1723209.1"
                     /translation="MEVVRSKGRIGGRRPKLTPEQWEQAGRLLAAGETRHRVGLLFDV
                     SISTLYKKFPVNQSR"
     gene            294..1466
                     /locus_tag="OQP62_003786"
     CDS             294..1466
                     /locus_tag="OQP62_003786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HCS1723210.1"
                     /translation="MAQDYHHGVRVVEINEGTRPITTVSTAIVGMVCTGDDADASVFP
                     INKPVLLTDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVAQGETEAETTSNIIG
                     GVTSDGKKTGMKALLSAQSQLGVKPRILGVPGHDTQAVATELLGVAQSLRGFAYLAAN
                     GCKTVEEAIAYRENFSQREGMLIWPDFINFDTVLKADATAYASARALGLRAKIDEQIG
                     WHKTLSNVGVNGVTGISADVFWDLQDPATDAGLLNKNDVTTLIRKDGFRFWGSRCLSD
                     DPLFAFENYTRTAQVLADTMAEAHMWAVDGVLNPSLARDIIEGLRAKMRSLVNQGYLI
                     GGDCWLDESVNDKDTLKAGKLTIDYDYTPVPPLENLMLRQRITDRYLVDFASRVAA"
     gene            1476..1991
                     /locus_tag="OQP62_003787"
     CDS             1476..1991
                     /locus_tag="OQP62_003787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HCS1723211.1"
                     /translation="MALPRKLKHLNLFNDGNNWQGIVESLTLPKFTRKFEKYRGGGMP
                     GAVDVDMGLDDGALDTEFSIGGTELLLFKQMGKATVDGIQLRFTGSIQRDDTGEVQAV
                     ELVVRGRHKEVDSGEWKTGESSSTKVSSTNSYAKLTINGEVLYEVDLVNMVEIVGGVD
                     LMEEHRNALGL"
     gene            2046..2348
                     /locus_tag="OQP62_003788"
     CDS             2046..2348
                     /locus_tag="OQP62_003788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001528658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HCS1723212.1"
                     /translation="MSDKLTEKTVKLDTPIMRGKTEITEIVLRKPQSGALRGTRLQAI
                     MDMDVGAMMTVIPRISSPTLTAQEMAELDPADLTAMAVEVVTFLLPKSVLADLPTT"
     gene            2363..2482
                     /locus_tag="OQP62_003789"
     CDS             2363..2482
                     /locus_tag="OQP62_003789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HCS1723213.1"
                     /translation="MADIATIFHWSPSITDVMPLTDVLEWRHKAIQRSGASDE"
     gene            2475..5255
                     /locus_tag="OQP62_003790"
     CDS             2475..5255
                     /locus_tag="OQP62_003790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004134619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1723214.1"
                     /translation="MSDNNLRLQVVLGAVDKLTRPFKNAQAGSKELASAIRQTRDQIK
                     KLSDAGGQLKSFDQLTQSVSRTGAELDQARLRAQMMTREMSSLESPTKKQTQALEAQW
                     RAVSRLEQKQQQETRQMAAARAELYRLGLSAGGGARETARIARETERYNRQLAEQERR
                     LREVGERQRKLNAIKAKAEKTRELRNSLAGNGAGAMAAGVTTGMTLLAPVKAYSESEN
                     AANQLAGSMMGPGGKVAPEFEKINRLAVALGDKLPGTTADFQNMMTMLRRQGMSAQVI
                     LGGLGESAAYLGVQLQMAPTAAAEFAAKLQDATQTSEKDMMNLMDVIQKGFYAGVDSG
                     NMLQGFSKISSAMNIINKKGLEAVKTFAPLLVMADQGSMAGESAGNAYRKIFQAALDA
                     DNIKAVNDDLKEKGAGIKFNFSDGKGGFGGLENMYAQLEKLKKLNPETQMATMKDLFG
                     NDAETLQALNIMLSKGIEGYRETAAKLENQASLRERVDASLNTLGNKWEAATGTFTNA
                     MASIGETVAPALKNLADWLGELASRLDGFVKRHPSLTSALFKMAAGFAVAATAVGAIS
                     LALASILGPMAIIRVSAGMLGLKFASVGGLVRAALGGLGKSVLWLGRLMFANPILAVI
                     GLIAAGAIYIWQNWDTLGPKFKAMWDAVCNATGTAWDWIKEKASAAWEGIKSLFFNYT
                     LPGLIAKNWDAIKSGVSEAWANIRQSISDKWNAILADVSALPAKFQDTGSAIIDSILD
                     GINAKWETLKSKLSSVTDYLPDWMTENNKTQDKAQVQVVGGAAAAAVPFAGMYDSGGI
                     IPRGQFGIVGENGPEIVNGPAKVTSRRRTAALASIVAGVMGVAAAPAEAAPLHPYSLP
                     TAAYKQSQPAKSASAPPVMHFETHAPITIYAQPGQSAQDIAREVARQLDERERKTRAK
                     ARSNFSDQGGYE"
     gene            5255..5740
                     /locus_tag="OQP62_003791"
     CDS             5255..5740
                     /locus_tag="OQP62_003791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1723215.1"
                     /translation="MMMVLGLYVFMLRTVPYQELQYQRSWRHAANSRVNRRPSTQFLG
                     PDNDPLTLSGVLLPEVTGGRLSLLALEQMAELGKAWPLIEGSGTIYGMFVIESLSQTK
                     TEFFESGMSRRIEFTLTLKRVDESLSDMFGSLSDQLSNLQDSATSAIGNIKNTVGGLL
                     Q"
     gene            5737..>6777
                     /locus_tag="OQP62_003792"
     CDS             5737..>6777
                     /locus_tag="OQP62_003792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HCS1723216.1"
                     /translation="MNFSSDLFGLNSRSPAFSITIEGKDVTTALDARLMSLTLTDNRG
                     FEADQLDLELDDADGQIVLPRRGAVIQLALGWKGQPLFPKGAFTVDEIEHSGAPDRLT
                     IRARSADFRETLNTRREKSWHQTTVGEVVKEIAARHNLKVALGKDLTDKVLDHMDQTN
                     ESDASFLMKLARQYGAIASVKDGNLLFIRQGQGRTASGKPLPVITITRKAGDGHRFTL
                     ADRGAYTGVIASWLHTREPKKKETTQVKRRHKKVATPKEPEAKQGDYLVGTDENVLVL
                     NRTYANRGNAERAAKMQWERLQRGVASFSLQLAEGRADLYTEMPVKVSGFKQPIDDAE
                     WTITTLTHTVSPD"
BASE COUNT         1644 a         1632 c         2026 g         1475 t
ORIGIN      
        1 ccagcgccgg gttggaagtg gtgcgttcaa aaggtcgtat tggtggcagg cgtccaaagc
       61 tcaccccgga acaatgggag caggccggac ggttgcttgc cgccggtgaa actcgtcatc
      121 gtgttggatt gctttttgat gttagcattt ccactcttta caagaaattc cctgtaaatc
      181 agtcgcgttg aaagtggcga tattgtacca gcactgacac atcgtgaaat acgtgcgccg
      241 cacgcctggc aaccagaaca taaggtatcc ctgtcaaccg gagagactgc cttatggctc
      301 aggattacca ccacggggtg cgcgttgttg aaatcaacga gggcacccga cctattacca
      361 cggtgagcac tgccatcgtg ggcatggtct gcaccggcga tgatgctgat gcgtccgtgt
      421 tccccatcaa taagcctgtc ctgctgactg atgtgctcac cgccagcggt aaagcggggg
      481 agtccggcac gctggcccgc tcgctggacg cgattgcaga tcaggcaaaa cccgtgactg
      541 tcgttgtgcg tgtggcgcag ggcgaaaccg aagcggaaac cacctccaat attatcggcg
      601 gcgtaacttc cgacggtaag aaaacgggca tgaaagcgct actgtcggcg cagtcgcagc
      661 tcggtgtcaa gccgcgcatt cttggggtgc cgggacatga cactcaggcc gttgctactg
      721 aactgctggg cgtggcgcaa agcttgcgcg ggtttgccta ccttgctgct aatggctgca
      781 aaacggtgga ggaagctatt gcctatcgcg agaatttcag tcagcgcgag ggaatgctga
      841 tctggcctga cttcatcaac tttgacaccg tgctgaaagc agacgcgacg gcttacgcct
      901 ccgcccgtgc gctcggcctg cgtgccaaaa tcgacgagca gatcggctgg cataaaaccc
      961 tgtccaatgt gggtgtgaac ggtgtcaccg gcatttccgc tgatgtgttc tgggatctgc
     1021 aggacccggc aaccgatgcg ggactgctga acaaaaatga cgtcaccaca ttgatccgca
     1081 aagacggctt ccgcttctgg gggtcccgtt gtctcagtga cgatccgctg tttgcctttg
     1141 agaactacac ccgcacggcg caggtgctgg ctgacactat ggcggaggcg cacatgtggg
     1201 cggtggatgg cgtgcttaat ccgtcgctgg cccgcgacat tattgaagga ctacgcgcca
     1261 agatgcgcag tctggtcaac cagggatacc tgattggtgg tgactgctgg ctggatgagt
     1321 ctgttaacga taaagacacc cttaaagccg ggaaactgac catcgattat gactacacgc
     1381 cggtgcctcc gcttgaaaac ctgatgctgc gccagcgcat caccgatcgt tacctggtcg
     1441 attttgccag ccgtgtcgct gcataagggg gaatcatggc tttaccacgc aagttaaaac
     1501 acctgaacct gttcaacgac gggaacaact ggcaggggat cgttgagtcc ctgaccctgc
     1561 cgaaattcac ccgcaagttt gagaagtatc gcggcggcgg tatgccgggc gcggtggacg
     1621 tagacatggg gctggatgac ggcgcactgg acacggaatt ttcaatcggc ggcaccgaac
     1681 tgctgttatt caagcagatg ggcaaggcaa ccgttgacgg catccagttg cgtttcaccg
     1741 gttccattca gcgtgacgat accggcgaag tgcaggccgt tgagctggtt gtgcgcgggc
     1801 gtcataaaga ggtggattcc ggcgagtgga aaaccggcga gagcagcagc accaaagtca
     1861 gcagtaccaa cagctacgcg aagctgacca ttaatggtga ggtgctctat gaggtcgatc
     1921 tggtcaacat ggtagaaatc gttggcggcg tggacctgat ggaagaacac cgtaatgccc
     1981 tcggcctctg attaacctta acggcgcggg cagccgcgcc agtatttcat taacaggaaa
     2041 cgaacatgag cgacaagctg actgaaaaga ccgtaaaact ggataccccc atcatgcgcg
     2101 gtaaaactga aattaccgaa attgtgctgc gcaagcctca gtccggcgcg ctgcgtggca
     2161 cccgtctgca ggccattatg gatatggacg tgggcgcgat gatgactgtg atcccgcgaa
     2221 tctcttcccc gacgctgacc gcgcaggaaa tggcagagct ggaccccgcc gatctgacag
     2281 caatggctgt agaggtggtg acttttttgt tgccgaagtc ggtgcttgcc gatttgccga
     2341 caacctgacg gttgatgatc tggtggcaga cattgccacc atctttcact ggtcgccgtc
     2401 catcactgac gttatgccgc tgactgatgt gctggagtgg cggcataagg caattcagag
     2461 aagcggggcc agcgatgagt gataataacc tgcgactgca ggtagttctg ggggcggtgg
     2521 ataagttaac ccgcccattt aaaaatgcac aggctggctc taaggagctg gcatcagcta
     2581 ttagacaaac ccgcgatcag attaaaaagc tgagtgatgc tggaggtcag cttaaatctt
     2641 tcgatcagct aactcaaagt gttagccgta ctggtgccga actggatcag gcgaggctac
     2701 gcgctcaaat gatgacgcgc gaaatgtctt ctttggaatc cccgacaaaa aaacaaacgc
     2761 aggcgcttga agctcagtgg cgtgctgttt cacgtcttga acaaaaacag caacaggaaa
     2821 ctcgccagat ggcggcagcc agagctgagc tttatcggct ggggttatct gctgggggcg
     2881 gagcgcgtga gacggcacgg attgcacgag aaactgagcg gtataaccga cagttggctg
     2941 agcaggagcg caggctgcgt gaagttggcg agcgtcagcg aaagctcaac gccatcaaag
     3001 ccaaggctga aaagacccgc gagttaagga actctctggc aggtaatggt gcaggggcga
     3061 tggcggctgg ggtaactact ggcatgacgt tgctggctcc agtaaaagcc tattcagaat
     3121 cagaaaatgc agcgaatcaa ctcgccggtt ccatgatggg gccgggcgga aaggtagcgc
     3181 ctgaatttga aaaaattaac cggcttgcag ttgctttggg tgataagctg ccgggaacaa
     3241 cagccgactt tcagaacatg atgactatgc tacgccgtca gggtatgtcg gcgcaggtca
     3301 tcctgggagg cttgggagag tcagcagctt atcttggcgt gcagttacag atggctccca
     3361 ctgcagcagc tgagtttgcg gctaagttac aagatgctac tcagacctcc gaaaaagaca
     3421 tgatgaatct gatggacgtg atccagaaag gattctacgc gggggtagat tcaggaaata
     3481 tgctgcaggg tttctcaaaa atcagcagcg cgatgaatat catcaataag aaggggttgg
     3541 aagcggtcaa aactttcgcg cctttgttgg ttatggctga tcaggggagt atggctggtg
     3601 agtctgccgg taatgcatac cgaaagattt ttcaggccgc tctggatgct gacaatatta
     3661 aggcggttaa cgatgacctg aaagaaaagg gcgcgggtat taaattcaac ttctctgacg
     3721 ggaagggtgg gtttggtggt ctggaaaata tgtatgccca gctggagaaa cttaaaaaat
     3781 taaatccaga aacccaaatg gcaaccatga aagatttgtt tggcaatgat gcggaaacgc
     3841 tacaagcgct gaacattatg ctatctaaag ggattgaagg atatagagaa actgcagcaa
     3901 agcttgaaaa tcaggcatcg cttagggagc gtgttgatgc atcgctgaac accctgggga
     3961 ataaatggga ggctgctacc gggacattca ctaatgcgat ggcgagtatt ggtgaaaccg
     4021 tagcacctgc attaaagaac ctcgccgatt ggctggggga gttagcctct cgtttggacg
     4081 gttttgttaa acgccatccc tcgcttacgt ctgccttatt caagatggct gcaggatttg
     4141 ccgttgctgc aacggctgta ggggctatct ctttggcgct ggcatcaatc cttggtccga
     4201 tggcaatcat cagagtgagc gcgggcatgt tgggcctgaa gtttgcgtcg gtgggtggct
     4261 tggttcgtgc tgcgctggga gggctcggga aatcagtttt atggctgggc cgattgatgt
     4321 ttgcaaaccc tatactggct gtcatagggc tgatcgccgc tggtgctatt tatatctggc
     4381 agaactggga cacgcttggg ccaaagttca aggccatgtg ggatgccgta tgtaatgcca
     4441 caggtacggc atgggattgg attaaagaaa aggccagcgc cgcgtgggag gggattaagt
     4501 cactgttctt taattatacc ttgccgggat taatagctaa aaattgggat gcaataaaat
     4561 ctggcgtttc tgaggcgtgg gccaatatca gacaatctat cagtgataaa tggaatgcga
     4621 tcctggctga tgtttccgcg cttcctgcga agtttcagga cacgggcagc gccattattg
     4681 acagcattct cgatggaatt aatgccaaat gggagacact caaaagcaag ctttcctcag
     4741 tcaccgatta tctgcctgac tggatgactg aaaataataa aacacaagac aaagcacagg
     4801 tgcaggtggt tggtggcgca gcggctgctg ctgttccgtt tgccgggatg tatgacagcg
     4861 gtgggattat tccgcgcggt cagttcggta ttgttgggga gaacggccct gaaattgtga
     4921 acggccccgc aaaagtgacc agtaggcggc gcactgccgc gttggcttcc atcgttgcag
     4981 gtgtcatggg cgtagcggca gcgcctgcag aggctgctcc actacatcct tacagtctgc
     5041 ctactgcggc atataaacaa agccagcctg cgaaatctgc cagcgcgccg ccagtgatgc
     5101 actttgaaac tcacgcgccg atcactatct atgctcagcc agggcagagt gcgcaggata
     5161 ttgcccgtga agttgcccga cagcttgacg aacgcgagcg caagaccagg gctaaagcac
     5221 gcagtaattt cagtgatcaa gggggatatg aataatgatg atggtactgg ggttatatgt
     5281 cttcatgctg cgtacagtgc catatcagga gctgcagtat cagcgaagct ggcgacacgc
     5341 cgccaacagt cgggtgaacc ggcgaccatc aacgcagttt cttggcccgg ataatgaccc
     5401 gctgacgtta tctggcgtac tgctgccgga agtcaccggc ggcaggctgt cattgctggc
     5461 acttgagcaa atggcagagc ttggcaaagc atggcccctg attgagggaa gtgggaccat
     5521 ttacggcatg tttgtgatcg agagcctgag tcagacaaaa acagagtttt ttgaaagcgg
     5581 aatgtctcgc cgtattgagt ttacgctgac cctgaaaagg gttgatgagt cgctgtctga
     5641 tatgttcggc agtctcagcg atcagctcag taacctgcag gactctgcaa cgtctgcgat
     5701 aggtaatatt aaaaatacgg ttggagggtt gctgcagtga attttagctc tgatcttttt
     5761 ggcctgaaca gcagaagccc ggctttcagt atcactattg aaggtaagga cgtgaccacc
     5821 gcgctggatg cgcgcctgat gagtctgacg ctgaccgata accggggttt tgaggctgac
     5881 cagcttgatc tggagctgga cgacgccgac gggcagatcg ttctgccgcg acgtggtgcc
     5941 gttattcaac tggcgctggg gtggaagggc cagccgcttt tcccaaaagg ggcatttacg
     6001 gtagatgaga ttgagcacag cggtgctcct gatcgtctga ctatccgtgc ccgtagcgct
     6061 gatttccgtg aaaccctcaa tacccggcgc gaaaaatcat ggcatcagac aacggtgggg
     6121 gaggtggtaa aggaaatcgc cgcccggcat aacctcaaag tggcgctggg taaagacctg
     6181 acggataagg tgctggatca tatggaccag accaatgaaa gcgatgcaag ttttctgatg
     6241 aaactggcga gacagtatgg ggcgattgct tccgttaagg acgggaacct gctgtttatc
     6301 cggcagggac agggaagaac ggcgagcggc aagccgctgc cggttatcac tatcacgcgc
     6361 aaagccggtg acggtcatcg ttttaccttg gctgatcgtg gcgcgtatac gggcgttatt
     6421 gccagttggc tgcatacacg tgaaccaaag aagaaagaaa caacgcaggt aaagcgccgt
     6481 cacaagaaag tcgccacacc caaagagccg gaagcaaaac agggtgatta tctggtggga
     6541 acggatgaaa acgtgctggt tcttaatcgt acctacgcca accgcggcaa cgctgagcgt
     6601 gcggcaaaaa tgcaatggga gcgcctgcaa cgtggtgttg cgtctttctc cctgcagctc
     6661 gcagaggggc gggcagatct ctacaccgaa atgccagtaa aggtgagcgg ttttaagcag
     6721 cctatcgacg atgccgaatg gaccattaca acgttgacgc atacggtcag cccggat
//
LOCUS       DAJVSD010000239         6769 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.239, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000239 DAJVSD010000000
VERSION     DAJVSD010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6769
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.239"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            73..2919
                     /gene="rcsC"
                     /locus_tag="OQP62_003793"
     CDS             73..2919
                     /gene="rcsC"
                     /locus_tag="OQP62_003793"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     RcsC"
                     /protein_id="HCS1723217.1"
                     /translation="MKYLASFRTTLKVSRYLFRALALLIWLLIAFVSVFYIVNALHQR
                     ESEIRQEFNLSSDQAQRFIQRTSDVMKELKYIAENRLTAENGVMSSRARDDKMVVPDF
                     EPLFADSDCAAMGSAWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGL
                     REMPVERDDALKALHERIMKYRNAPQEESGNNLFWISQGARQGVGYFYALTPVYLANR
                     LQALLGVEQSIRMENFFTPGSLPMGVTIIDENGHSLISLTGPDGIIKAEPRWMQERSW
                     FGYTPGFRELVLKKSLPPSSLSIVYSVPVDLVLERIRILILNAILLNVLVGAGLFTLA
                     RMYERRIFIPAESDAQRLEEHEQFNRKIVASAPVGICILRTIDGVNILSNELAHTYLN
                     MLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRV
                     KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLV
                     TAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG
                     LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVLHVRCDGDYLSIRVRDT
                     GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS
                     QFTLRIPLYGAQYPVKKSVEGLAGTCCWLAVRNTSLCQFIETSLARSGVHTQRYEGQE
                     PAADDILIVDDALEHTWQGRAAVVFCRRHIGIPLERAPGEWVHSVASVHELPALLARI
                     YSIELDSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTAND
                     GVDALNVLSKNAIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRC
                     LESGMDSCLSKPVTLDALKQTLAVYAERVRKTRA"
     gene            complement(3022..3672)
                     /gene="rcsB"
                     /locus_tag="OQP62_003794"
     CDS             complement(3022..3672)
                     /gene="rcsB"
                     /locus_tag="OQP62_003794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator RcsB"
                     /protein_id="HCS1723218.1"
                     /translation="MNNMNIIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINN
                     LPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLD
                     IEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR
                     LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVTLSPTDKE"
     gene            complement(3689..6358)
                     /gene="rcsD"
                     /locus_tag="OQP62_003795"
     CDS             complement(3689..6358)
                     /gene="rcsD"
                     /locus_tag="OQP62_003795"
                     /EC_number="2.7.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase RcsD"
                     /protein_id="HCS1723219.1"
                     /translation="MSQSDTTVSTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNA
                     WLKDKSYQIVDITHAIHKRVDTWRYVTWQIYDNIAATTTPSTGEGLQETRLKQDVYYL
                     EKPRRKTEALIFGSHDSATLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLILIST
                     LPLKDLSSGFKESTIGNIVDSRRAEMLQQANALDERESFSSLRKLAWQNGHYFTLRTT
                     FNQPGHLATVVAFDLPINDLIPPGMPLDSFRIEPDATQTTGRSSEKEAPDSVTISFNG
                     SKIEISSALNSTGMRLIWQVPFGTLLLDTLQNILLPLLLNIGLLALALFGYATFRHQP
                     GRSTESTSGNAANNELRVLRAINEEIVSLLPLGLLVYDQEGNRTVISNKIADHLLPHL
                     NLQNITSMAEQHQGVIQATINNELYEIRLFRSQIAPRTQIFIIRDQDREVLVNKKLKQ
                     AQRLYEKNQQGRAAFMQNISNTLKEPVRQLAVNAAAVTTPESLKLADQADVLVRMIDE
                     IQLANMLENDAWKSEATLFSLQDLIDEVVPEVLPAIKRKGLQLLINNHLSGNDERWGD
                     RDALRRILLLLIQYAVTTTAMGKITLEVEQDESIAERLTFRILDTGEGVTLNEIDNLH
                     FPYMNETQGDRYGKANPLTFWLCNQLARKLGGHLNIKARETLGTRYTVHVKMLPHDQH
                     TQVEERLLDDVSVMVDVTSNEVRAIVLRQLENWGATCITPDERQISQEYDLFLTDNPS
                     NLTASGLLLSDDESGVRKIGPGQLRVNFNMSNAMQEAVLQLIEEQLAQEEIPASPLGG
                     DENAELHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPGK
                     QLCVTLEHLIREKDAPGIEKYISDIDAYVKSLL"
BASE COUNT         1566 a         1665 c         1823 g         1715 t
ORIGIN      
        1 cgttgcgggc tacgtcattt accgctacct tagtcacact ctatttacat cctgaggcgg
       61 agcttcgccc ctttgaaata ccttgcttcc tttcgaacta cgctgaaagt ctcgcgctac
      121 ttattcagag cgttagcgtt actcatttgg ctcttaatcg cctttgtttc ggtgttttac
      181 atcgtcaatg ccctgcacca gcgggagtct gaaattcgtc aggagttcaa ccttagctcc
      241 gatcaggcgc agcgttttat ccagcgcacg tcggatgtga tgaaagagct caaatatatc
      301 gccgagaacc gtttaacggc ggaaaacggc gtcatgtcgt cgcgtgcgcg tgatgacaaa
      361 atggtggtgc cggattttga accgctattc gccgactcag actgtgcggc gatgggctcc
      421 gcctggcgcg gctcgctgga gtcgctggcc tggtttatgc gttactggcg cgacaacttt
      481 tcagcggcgt atgatcttaa ccgcgttttc ctgattggca gcgataacct ctgtatggcg
      541 aatttcggcc tgcgtgaaat gcccgtggag cgcgatgatg cgttaaaagc gttacatgag
      601 cggattatga aataccgcaa cgcgccgcag gaagaaagtg ggaataacct tttctggata
      661 agccagggcg cgcgtcaggg cgtgggctac ttttatgcgc tgacgccggt gtatctggcc
      721 aatcgtctgc aggcgctgct gggcgttgag cagtccatcc gtatggaaaa ttttttcacg
      781 cccggcagtt tgccgatggg cgtcactatt attgatgaga acggccattc gctgatttcg
      841 ttgaccggtc ctgacggcat tattaaagcg gagccgcgct ggatgcagga gcgttcctgg
      901 tttggttata cgccaggttt tcgcgaactg gtactcaaaa aaagcctgcc gccatcctcg
      961 ctcagtattg tctattctgt gcctgtagat ttagtcctgg agcgtattcg tattcttatc
     1021 ctgaacgcta tcctgctgaa cgtgctggtg ggcgcagggc tgtttacgct tgcgcggatg
     1081 tatgagcggc gaattttcat tccggcggag agcgatgccc agcgtctgga agaacatgaa
     1141 cagttcaacc gtaaaatcgt tgcctccgcg ccggtgggga tctgtattct gcgcactatt
     1201 gatggtgtca atattctgag taacgaactg gcgcacacct acctgaacat gctcacgcat
     1261 gaagacagac agcgcctgac gcaaatcatt tgcggccagc aggtcaactt tgttgatgta
     1321 ttgaccagca ataataccaa tttgcaaatt agcttcgtcc attcccgcta tcgtaatgaa
     1381 aacgtcgcga tttgcgtgtt ggtagatgtg agtacgcgcg tcaaaatgga agagtcgctg
     1441 caagagatgg cgcaggcggc ggagcaggca agccagtcta aatccatgtt ccttgcaacg
     1501 gtcagccatg aattgcgcac accgctgtac ggtatcatcg gcaatctcga tctgctgcaa
     1561 accaaagagc tgccaaaagg cgtggatcgt ctggtcacgg cgatgaataa ctcctccagt
     1621 ctgttgctga aaattatcag cgacattctc gacttctcga aaattgagtc ggaacagcta
     1681 aagattgagc cgcgcgaatt ttcaccgcga gaggtgatga accatatcac cgccaattat
     1741 ctgccgctgg tggtgcgtaa gcaactcggc ctgtattgtt ttattgagcc tgacgtgccg
     1801 gtatcgctga acggcgaccc gatgcgttta cagcaggtta tttcaaacct gttgagcaac
     1861 gccattaagt ttaccgatat tggctgcatc gtgctgcatg tgcgctgtga tggggattat
     1921 ctcagcattc gcgtgcggga taccggggtt ggtattccgg caaaagaggt ggttcgcctg
     1981 ttcgatccct tcttccaggt gggaaccggc gtacagcgta actttcaggg gaccggtctg
     2041 gggctggcga tttgcgaaaa attgatcagc atgatggacg gcgatatttc cgtcgattcg
     2101 gagccgggca tgggaagcca gtttacgttg cgcatcccgc tttatggcgc gcaataccct
     2161 gtgaaaaaga gcgtggaagg actcgccgga acctgctgtt ggctggcggt gcgcaatact
     2221 tctttgtgcc agtttattga gaccagtctg gcgcgtagcg gcgttcatac gcagcgttat
     2281 gaagggcaag aacccgccgc agacgatatt ttgattgtcg atgacgcgct ggagcatacc
     2341 tggcagggga gggcggcggt cgtcttttgc cgccgtcata tcgggattcc attggaaaga
     2401 gcgcctggcg agtgggtgca tagtgtggcg tcggtgcatg agttgcccgc gctgttggcg
     2461 cgtatctata gtattgagct ggatagtgaa gcgctttcca gcgcattgcc gacgacggat
     2521 aaaaccgcag attcaaatga cgacatgatg attctggtcg ttgacgatca tccgatcaat
     2581 cgccgcttgc tggccgatca actgggatcg ctggggtatc agtgtaagac agccaatgat
     2641 ggcgtggacg ctctgaatgt gctgagtaaa aatgctatcg atattgttct gagcgatgtg
     2701 aacatgccga acatggacgg ctatcgcctg acgcagcgta tccgtcagct tgggctgacg
     2761 ctgccggtcg tcggcgtgac ggcgaacgcg ctggcggaag agaaacaacg ttgcctggag
     2821 tccggtatgg atagctgttt gtcgaagcct gtgacgctgg atgcgttgaa acagacgctg
     2881 gcggtgtatg ccgagcgggt acgtaaaacg cgggcataaa aaatgccgga tggcggcgtc
     2941 gcctgtccgg cctgtaaaag atgagtcgac tggtaggcct gataagcgta gcgccatcag
     3001 gctgggtaac ataaaagcga tttattcttt gtctgtcgga ctcagggtga cggaagagag
     3061 atagttgagc agcgcgatat cattctctac gcccagtttc atcatcgccg atttcttctg
     3121 gctgctgatg gtcttaatgc tgcggttgag cttcttggcg atttcggtga ccaggaagcc
     3181 ctcggcgaac aggcgtaata cttcgctctc ttttggcgac aggcgcttat cgccgtaacc
     3241 gcctgcgctg attttctcca gcagacgaga aacgctttcc ggggtgaatt ttttgccttt
     3301 ttgcagcgcg gccagcgcct taggcagatc ggttggcgca ccctgtttga gtacgatccc
     3361 ttcaatatca agatccaaca cggcgctcag gatcgccgga ttgttgttca tggtcagaac
     3421 gataatagac aggctcggaa aatgacgctt gatgtacttg atcaaggtga tcccatcgcc
     3481 gtatttatct cccggcatgg agaggtcagt gatcaacaca tgcgcatcta atttcggcag
     3541 gttgttgatc aatgctgtgg aatcttcaaa ttcgccgaca acattcaccc actcgatttg
     3601 ttcaagtgat ttgcgaatac cgaacagtac aatcgggtgg tcatcggcaa taattatgtt
     3661 catattgttc atgtattggg ctactttgct acagcaagct tttgacgtag gcgtcaatgt
     3721 cgctgatata tttttctata cctggagcat ctttctcacg aatcagatgt tccagcgtta
     3781 cacataactg cttgccgggt accagattaa gcatggcaaa cacccctttc aggcggtggg
     3841 ccgtttgggc cagcgcagcg aaatcgctgg ttgccgcctc agtatacaac ctcttaacat
     3901 catccggtac tgtgtctaca aatagcgcat aatagccgct ggcatgaagc tcggcatttt
     3961 catctccgcc gagcggggag gcgggaatct cttcctgcgc cagctgctct tcgataagtt
     4021 gtagtacagc ttcctgcata gcattgctca tattaaagtt gacgcgcaac tgacccgggc
     4081 caattttccg cacgcctgac tcatcatcgc ttaaaagcaa gcccgaggca gtaagattag
     4141 acggattatc cgttaaaaag agatcatatt cttgacttat ctgcctttca tccggcgtga
     4201 tgcaggtggc gccccagttt tctaactgac gcagcacaat cgcgcgaacc tcgttggacg
     4261 tcacatcgac catcacgctc acgtcgtcca gcaggcgctc ttcgacctga gtatgctgat
     4321 cgtgaggaag cattttgaca tgaacggtat agcgcgtgcc cagcgtttct cgcgctttaa
     4381 tgttgagatg accgcccagt ttgcgcgcca gttgattgca cagccagaag gtgagcggat
     4441 tcgctttgcc gtaacggtcg ccctgcgttt cattcatata cgggaaatgc agattatcaa
     4501 tctcgtttaa cgttacgcct tcgcccgtat ccagaatacg gaaagtcaga cgctccgcga
     4561 tagattcatc ctgctcgact tcaagcgtaa ttttacccat agcggtcgtc gtgacggcat
     4621 actgaatcaa cagcagcaaa atccggcgca gggcgtcgcg atcgccccag cgttcatcgt
     4681 tgccgctaag atggttatta atcagcagtt gcagcccttt acgcttaatg gcgggcagca
     4741 cttccggcac gacttcgtca ataagatcct gcagggagaa cagcgtggct tcgcttttcc
     4801 atgcgtcatt ttccagcata ttcgccagtt ggatttcatc gatcatacgt actaatacat
     4861 ccgcctgatc cgccagtttc aggctttccg gcgtggtgac tgccgcggcg ttaaccgcca
     4921 gttggcgtac gggctcttta agcgtgttgc tgatattttg cataaaggcg gcgcggccct
     4981 gctgattctt ctcatacaaa cgctgcgcct gtttaagctt cttattcacc agcacttccc
     5041 ggtcctgatc gcgaataata aagatctgcg tgcggggggc gatctggctg cgaaacagac
     5101 ggatctcata cagttcgtta ttaattgtcg cctgaatcac gccctgatgc tgctccgcca
     5161 tgctggtaat attttgcagg ttaagatgcg gcaacagatg atcggcgatt ttattgctga
     5221 tcacggtgcg gttgccttcc tgatcgtaga ccagcagacc cagcggcagc agagaaacga
     5281 tctcttcatt aatggcgcgt aagacgcgaa gctcattatt cgccgcgttg ccggatgtcg
     5341 attccgtcga ccgtcccggc tgatgacgga acgtggcgta gccaaataac gccaacgcca
     5401 gcagcccgat gttcagcagt aaaggcagca aaatattttg caacgtatca agcaaaagcg
     5461 taccgaacgg tacctgccag atcaggcgca ttccggtaga gttaagcgct gaggagatct
     5521 caatttttga accgttaaag ctaatcgtga cgctatctgg cgcttccttt tcactgcttc
     5581 gccccgtcgt ctgggttgcg tcaggctcta tccgaaaact gtccagcggc attcccggcg
     5641 ggattaaatc attaatgggc agatcaaacg ccaccacggt tgccagatgt cctggctgat
     5701 tgaaggtcgt gcgcagcgta aaatagtgac cgttttgcca ggccagtttt cgcaatgagg
     5761 agaaactttc gcgctcatcc agcgcattcg cctgctgcaa catctctgcc cggcgggaat
     5821 cgacgatatt gccaatagtg gactctttaa agccggaaga gagatctttc aacggtaggg
     5881 tagagataag aatcaggctg ttatcctgtc cgttgaggta atacattgac cacggcacgt
     5941 tttccgcgcc ccacagcgta tccagataag ttgacatacg ctgcgtcatt tccagcgtgg
     6001 cgctgtcatg ggaaccgaaa atcagcgctt cagttttacg tcgcggcttt tcaagataat
     6061 acacatcctg tttcagacgc gtttcctgaa gtccttcacc tgtcgatggc gtagtggtcg
     6121 cggcgatgtt gtcataaatt tgccaggtaa cataccgcca ggtgtccacg cgtttatgaa
     6181 tagcgtgagt gatatcgaca atttgatagc ttttgtcttt caaccaggcg ttgacggcgc
     6241 tctgtaccat aacgcccatc gttaccagca gcacaatgat cagcaataag aagaaacggg
     6301 taatgcttcc cggtagaagg gagaatcggg tagagaccgt tgtgtcagac tgactcattt
     6361 atgtttacga cctgtaaaag caacgctgaa ggtgaagggc agtataaagg gtaatgaatg
     6421 aatttccaga ctcttacgtc atgccgggca acttaacacg cgctccgtcg gcgggacggg
     6481 aaaagcgtac aaccttcgca aaacggtaca aatataaaga ctacttataa atgtttagca
     6541 ctaaatatca agaaattatt tgctaatgtc ttatgaacgg tcgagcaggg gagggtagtg
     6601 aataaccgtg atagttttag gcaggtagca taaatcagcc gggtgtgtct gaaaaagggt
     6661 aaaaaaaccg aatgcgaagc atccggttga aataggggta aacagacatt cagaagtgaa
     6721 tgacggtaat aaataaagtt aatgatgata gcggtcacta ttttagttg
//
LOCUS       DAJVSD010000240         6710 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.240, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000240 DAJVSD010000000
VERSION     DAJVSD010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6710)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6710)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6710
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.240"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            16..258
                     /locus_tag="OQP62_003796"
     CDS             16..258
                     /locus_tag="OQP62_003796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdY family protein"
                     /protein_id="HCS1723220.1"
                     /translation="MIYLWTFLAISILAVSGYIGQVMGAFSAVSSFTGMVILAALIYL
                     LNVWLQDGDDIVSGLLLFLAPACGLIIRFMVGYGKR"
     gene            complement(497..1888)
                     /gene="pgtP"
                     /locus_tag="OQP62_003797"
     CDS             complement(497..1888)
                     /gene="pgtP"
                     /locus_tag="OQP62_003797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate transporter PgtP"
                     /protein_id="HCS1723221.1"
                     /translation="MLTILKTGRSAHKVPPEKVQATYGRYRIQALLSVFLGYLAYYIV
                     RNNFTLSTPYLKEQLDLSATQIGLLSSCMLIAYGISKGVMSSLADKASPKVFMACGLV
                     LCVIVNVGLGFSSAFWIFAALVVFNGLFQGMGVGPSFITIANWFPRRERGRVGAFWNI
                     SHNVGGGIVAPIVGAAFAILGSEHWQSASYIVPACVAVIFALIVLVLGKGSPREEGLP
                     SLEQMMPEEKVILKTKNTAKAPENMSAWQIFCTYVLRNKNAWYISLVDVFVYMVRFGM
                     ISWLPIYLLTVKHFSKEQMSVAFLFFEWAAIPSTLLAGWLSDKLFKGRRMPLAMICMA
                     LIFVCLIGYWKSESLLMVTIFAAIVGCLIYVPQFLASVQTMEIVPSFAVGSAVGLRGF
                     MSYIFGASLGTSLFGVMVDKLGWYGGFYLLMGGIVCCILFCYLSHRGALELERQRQNA
                     LHNQDSLQLADAQ"
     gene            2324..3517
                     /gene="pgtC"
                     /locus_tag="OQP62_003798"
     CDS             2324..3517
                     /gene="pgtC"
                     /locus_tag="OQP62_003798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate transport regulator PgtC"
                     /protein_id="HCS1723222.1"
                     /translation="MFGSCQAYSRELVMATTFSPSATAWIIQRWQTEPGSVMIRTLNR
                     TSGSLEQLLDTANAENVDLILTSSPMLLQHLQEHQKLALLDSAPAASQKLVPRSIRST
                     SVAVAVSGFGLLINRSALAARHLPPPADWQDMGLPSYQGALLMSSPSRSDTNHLMVES
                     LLQQKGWTAGWATLLAISGNLVTISSRSFGVADKIKSGLGVAGPVIDNYANLLLNDPN
                     LAFTYFPYSAVSPTYVAVLKNSRHADEARAFIHYLLSPKGQRILADANTGKYPVAPLS
                     ADNPRAAQQQRLMAQPPLNYRLILKRQQLVQRMFDTAISFRLAQLKDAWRALHSAETR
                     LKRPLPEIRALLTSVPVDAASSEDETWLAQFDNKSFAEQKMMEWQIWFLNNQRLAIHK
                     LEELK"
     gene            3514..5520
                     /gene="pgtB"
                     /locus_tag="OQP62_003799"
     CDS             3514..5520
                     /gene="pgtB"
                     /locus_tag="OQP62_003799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     PgtB"
                     /protein_id="HCS1723223.1"
                     /translation="MKGRLLQRLRQLSISNSLRGAFLTGALLTLIVSMVSLYSWHEQS
                     SQVRYSLDEYFPRIHSAFLIEGNLNLAVDQLNEFLLAPNTTVRLQLRTQIIQHLDKIE
                     RLSQGLQLAERRQLAVILQDSRTLLAELDNALYNMFLVREKVSELSARIDWLHDDFTT
                     ELNSLVQDFTWQQGTLLDQIEANQGDAAQYLQRSREVQNEQQQVYTLARIENQIVDDL
                     RDRLNELKSGNNDGMLVETHIRYLENLKKTADENIRALDDWPSTITLRQTIDELLEIG
                     MVKNKMPDTMRDYVAAQKALLDASRAREATLGRFRTLLEAQLGSSHQQMQTFNQRLEQ
                     IVRVSGGLILVTTLLALLLAWGLNHYFIRSRLVKRFTALNQAVVQIGLGRTDSTIPVY
                     GRDELGRIARLLRHTLGQLNMQRRQLEQEVAERKEIEADLRAMQDELIQTAKLAVVGQ
                     TMTTLAHEINQPLNALSMYLFTAGRAIEQGQSGQARNTLTKAEGLINRIDAIIRSLRQ
                     FTRRAELETPLYPVDLRQTFVAAWELLAMRHQSRQGALSLPTDTVWVSGDEVRIQQVL
                     VNVLANALDACSHDAAIAVTWQTQGEALEVYIADNGPGWPGALLPSLLKPFTTSKAVG
                     LGIGLSISVSLMAQMKGDLRLASTLTRNACVVLQFSVTDVDDVE"
     gene            5510..>6710
                     /gene="pgtA"
                     /locus_tag="OQP62_003800"
     CDS             5510..>6710
                     /gene="pgtA"
                     /locus_tag="OQP62_003800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator PgtA"
                     /protein_id="HCS1723224.1"
                     /translation="MLNDECSILLIDDDVDVLDAYTQMLEQAGYRVRGFTHPFEAKEW
                     VKADWEGIVLSDVCMPGCSGIDLMTLFHQDDDQLPILLITGHGDVPMAVDAVKKGAWD
                     FLQKPVDPGKLLILIEDALRQRRSVIARRQYCQQTLQVDLIGRSEWMNQFRQRLQQLA
                     ETDIAVWFYGEHDTGRMTGARYLHQLGRNAKGPFVRYELTPENAGQLETFIDQAQGGT
                     LVLSYPEYLTREQQHHLARLQSLEHRPFRLVGVGSASLVEQAAANQIAAELYYCFAMT
                     QIACQSLSQRPDDIEPLFRHYLRKACLRLNHPVPEIAGELLKGIMRRAWPSNVRELAN
                     AAELFAVGVLPLAETVNPQLLLQEPTPLDRRVEEYERQIITEALNIHQGRINEVAEYL
                     QIPRKKLY"
BASE COUNT         1613 a         1642 c         1817 g         1638 t
ORIGIN      
        1 caggaggtat tatagatgat ctatttatgg acatttcttg caataagtat acttgccgtg
       61 agtggctata tcggtcaggt gatgggggct ttttctgcgg tttcttcttt tacgggaatg
      121 gttatccttg ccgcgctgat ttatttactc aatgtatggc tgcaggatgg cgatgacatc
      181 gttagcggat tattgctttt tctcgcaccg gcatgtgggt taattattcg ctttatggtg
      241 ggatacggta agcgttagtc agtacatacc tttcatactt caagtggctt atgtgttggc
      301 tatggattac tcggcccatt catgggcctc gccctgacgg gacgtcgctc accccagtca
      361 catcgttatc tatgctcccg gggactcact cccttgccgc ttttaagcaa ctcgaattat
      421 ttttggtata cacgatgtca gcgaatagat agcgccgaca atgtcggcgc ttctgttccc
      481 cgggaaggct aatcgtttat tgcgcgtccg caagctgcag tgagtcctga ttatgtaacg
      541 cattctggcg ctggcgttcc agttccagcg cgccgcgatg ggagaggtaa cagaatagaa
      601 tgcagcacac gatgccgccc atcagaagat aaaatccgcc gtaccagccc agtttatcca
      661 ccatgacgcc aaacaggctg gtgcccaacg aggcgccgaa aatatagctc atgaacccac
      721 gtaaaccgac ggcggaacct acggcaaagc tggggactat ctccattgtc tgtacggacg
      781 cgaggaattg cgggacgtaa atcagacaac ctacaatggc ggcgaaaatc gttaccatca
      841 gcaaagattc acttttccag tatccgatca gacagacaaa aatcagcgcc atgcaaatca
      901 tggctaacgg cattctgcgg cccttaaaca gtttatctga cagccagcct gccagtagcg
      961 tagagggaat tgccgcccac tcgaaaaaga gaaacgcgac gctcatctgt tcttttgaaa
     1021 agtgttttac tgtcaacaga tagataggca accagctaat catgccaaac cgcaccatat
     1081 agacgaagac atcgaccagc gaaatatacc aggcattttt attgcgcagc acataagtac
     1141 agaagatttg ccatgcgctc atattttccg gcgcttttgc cgtattcttc gttttcagta
     1201 tgactttttc ttccggcatc atctgttcca gggagggaag accttcttcg cgcggcgaac
     1261 cttttcccaa gaccagaaca attaaggcaa aaatgacggc gacgcaggcc ggaacgatat
     1321 aactggcgct ttgccagtgt tcgctgccca atatcgcaaa agccgcaccg acgataggcg
     1381 cgacgatccc gccgccaacg ttatgcgaga tattccagaa ggcgcctacg cgtccgcgtt
     1441 cccgacgagg gaaccagttt gcaatagtaa taaacgaggg gccgacgccc atgccctgaa
     1501 aaaggccatt gaagaccacc agagcggcaa atatccagaa tgcgctactg aatcccagcc
     1561 caacgttaac aatcacgcag agtaccagac cgcacgccat gaagactttt gggctggctt
     1621 tatccgccag actgctcatt acgcctttac tgattccgta agcaataagc atacagctac
     1681 tcagcaggcc gatttgcgta gcgctgagat ccaattgctc ttttaaataa ggcgtcgata
     1741 atgtgaagtt gtttctgact atatagtaag cgagatatcc cagaaatacg cttaacaatg
     1801 cctgtatacg atatcgacca tacgtagcct ggactttttc cggtgggact ttatgcgccg
     1861 atcgccctgt ttttaatatt gttaacatgg agtcacctgt attttatagt gagatgaaca
     1921 tcaggaggtt ttgtcggtag agtgaaagga gtgacaataa aattcaagtc gaggaaatgt
     1981 gtcaaaattg actcaattgg gtgaatttaa aggttatttt tgacccatcc tgaagggtgt
     2041 ggtgaaactt taattattgg catggccgtt ttatcgttag catgtgcgga tattaacaaa
     2101 tttgctgcca gtgatctgat acgctttatt gatgttttcg ggcgacggac ccgttattat
     2161 tcaaataacg ttgttctgga tgccaacaga aataaaaggg taagttttgt ctcaatattt
     2221 tctttatgtg atatcgatat ttatgaacgg gatcacaaat cgacttttct catactgtgg
     2281 ttgtttcgcc agagtgggcg cttttacgct atggctggcg gcgatgttcg gttcttgcca
     2341 ggcgtacagc cgcgagctgg tgatggcaac gaccttttca cccagcgcga ccgcctggat
     2401 tatccagcgc tggcagacgg agccgggttc cgtcatgatt cgtacgctca accgtaccag
     2461 cggttcttta gagcaattac ttgatacggc gaatgcggaa aatgtcgatc tgatcctgac
     2521 gtcatccccc atgctgttgc aacaccttca ggagcaccaa aagctggcgc tattggatag
     2581 cgcgcctgcc gccagccaga agctggtgcc gcgttctatc cgctcaactt cagtggcggt
     2641 agcggtatcc ggatttgggc tattgatcaa ccgttcagcg ctcgctgcgc gccatcttcc
     2701 gccgcctgcc gactggcagg atatgggcct gcccagttac cagggcgctc tattaatgag
     2761 cagtccgtca cgctcagaca ccaatcattt gatggtggag tcgctgttgc agcaaaaagg
     2821 ctggacggca gggtgggcga cgctgctggc aatctcgggt aatttggtca cgatttcctc
     2881 tcgcagtttc ggcgtagcgg ataaaatcaa aagcgggctt ggcgttgccg ggccggtcat
     2941 tgataactat gctaatttgc tactcaacga tcctaatctt gcttttacct attttccgta
     3001 ttctgcggtg tcgcccactt acgtcgcggt gttgaaaaac agccgtcatg cagacgaagc
     3061 gcgtgctttt attcattact tattaagtcc gaaagggcaa aggatactgg ctgacgcgaa
     3121 taccggtaag tatcccgtcg caccgcttag cgccgataat cctcgcgccg cgcaacaaca
     3181 gcgtttgatg gcccagccgc cgttgaacta tcgtctgatc ctgaagcgtc agcaactggt
     3241 acaacgcatg tttgataccg cgatcagttt tcgtcttgcg cagcttaaag atgcatggcg
     3301 agcgttgcac agcgcagaaa cgcggcttaa acgcccctta cctgaaatca gagccttatt
     3361 gaccagcgtc ccggtggatg cggcaagcag cgaagatgaa acctggctgg cgcagtttga
     3421 taataaaagc tttgccgaac aaaaaatgat ggagtggcag atctggtttc tgaacaatca
     3481 gcggctggcg attcacaaac tggaagagct gaaatgaagg ggagattatt gcaacggctt
     3541 cgtcagctca gtatcagcaa cagtttacgg ggtgcatttt taacgggcgc attactgacg
     3601 ctgattgtca gtatggtcag cctttattcc tggcatgagc aaagttcgca ggttcgctat
     3661 tcgcttgatg aatattttcc tcgcatccac tccgcttttt taattgaggg gaacctgaat
     3721 ctggccgtgg atcaactcaa tgaatttttg ctggcgccga acacgacggt acgtttgcag
     3781 ttacgtacgc agattattca gcatctggat aagattgagc gtctcagtca ggggcttcag
     3841 cttgctgagc gccggcaact ggccgtcatt ttacaggata gccggacctt gctggcggag
     3901 ctggacaacg ccctctacaa catgtttttg gtgcgggaga aagttagtga gctttccgct
     3961 cgcatcgact ggctccatga tgatttcacc acggagctaa attcgctggt acaggatttt
     4021 acctggcagc aagggacgct gctcgatcaa attgaggcga atcagggcga cgcggctcag
     4081 tacttgcaac gttcgcgcga ggtgcagaac gagcagcagc aggtatatac cctggcgcga
     4141 attgaaaatc agattgttga tgacctgcgc gacagattga atgagctcaa gtccggcaat
     4201 aatgacggga tgctggtgga gacccatatt cgctatctgg aaaacctaaa aaaaacggcg
     4261 gatgagaata ttcgtgcgct cgatgactgg cccagtacga tcacgctgcg gcaaaccatc
     4321 gacgaactat tggaaatcgg gatggtaaaa aataagatgc ccgataccat gcgcgattat
     4381 gttgcggcgc aaaaagcctt actggacgcc agccgcgcca gagaggctac gctagggcgc
     4441 tttcgcacgc tgcttgaggc gcagttaggt agtagtcacc agcaaatgca gacgttcaat
     4501 caacgcctgg aacagattgt tcgcgttagc ggcgggctta ttttagtgac gacgctcctg
     4561 gcgttgctac tggcctgggg actcaaccac tattttatcc gttcccgact ggtgaagcgt
     4621 tttaccgcgc ttaatcaggc tgtggtacag atagggctgg ggagaaccga ctcgactatc
     4681 ccggtttacg ggcgcgatga gctaggacgg atagcccgct tgctacgtca tacgctgggc
     4741 cagctcaata tgcaacgcag gcagcttgaa caagaggtcg ccgagcgcaa agagatagaa
     4801 gccgacctgc gcgccatgca ggatgagttg attcagacgg cgaaactggc ggtagtcggc
     4861 cagaccatga ccacgctggc gcatgaaatt aaccagccgc tgaatgcgct ttcaatgtat
     4921 ttatttacgg cgggacgcgc gattgaacaa ggtcagagcg gacaggcgag aaatacgctc
     4981 accaaagcgg aagggctcat taaccggatt gacgccatta tccgttcgct gcggcagttt
     5041 acccgtcggg cggagctgga aacgccattg tatcccgttg atctgcgcca aaccttcgtg
     5101 gcggcatggg agttattagc catgcgccac caatcccggc agggagcgct ttcactgcca
     5161 accgacaccg tatgggttag cggcgatgaa gtgcgtattc agcaggttct ggtgaatgtg
     5221 ctggcgaatg cgcttgacgc ctgttcgcat gatgcggcga tcgcggtgac atggcagacg
     5281 cagggagagg cgctggaggt ttatattgca gataacggcc ctggctggcc tggggcgctg
     5341 ttgccctctt tactcaagcc gtttaccacc agtaaagctg tcgggttggg tattgggctg
     5401 tcgattagcg tgtcgctgat ggcgcaaatg aagggcgacc tgcgtctggc gtcgacgctg
     5461 acgcgtaatg cttgcgtggt gctgcaattc tcggtaacgg atgtcgatga tgttgaatga
     5521 tgaatgttct attttgctga ttgatgatga cgttgatgta cttgacgcct atacccaaat
     5581 gcttgagcag gcaggctacc gcgtgcgtgg ctttacccat cctttcgagg ccaaagagtg
     5641 ggtaaaagcg gattgggagg ggatcgtttt gagcgatgtg tgtatgccgg ggtgttccgg
     5701 tatcgatctt atgacgctgt ttcatcagga tgacgatcaa ctgccaatct tattgattac
     5761 cggacatggc gatgtaccga tggcggttga tgcggtgaaa aagggcgcct gggattttct
     5821 gcaaaaaccc gtcgatccgg gcaaactgtt gatattaatt gaagacgcgc tacgccagcg
     5881 ccggtcggtt attgcacggc ggcaatattg ccagcagacg ttacaggttg acctgattgg
     5941 gcgcagcgag tggatgaatc agtttcgaca acggttacaa caactggcgg aaacggacat
     6001 tgccgtatgg ttttacggtg agcatgacac aggacgtatg actggcgccc gttatctcca
     6061 tcagctgggg cgtaacgcga aagggccgtt tgttcgctat gaactcacgc cggagaatgc
     6121 cgggcagttg gagacattca tcgaccaggc gcaaggaggc acgctggtgt tgagttatcc
     6181 cgaatatctg acacgcgaac agcagcacca tctggcgcgt ttacaaagcc tggagcatcg
     6241 gccttttcgt ttggtgggcg ttggcagcgc ttcgctggtg gagcaggcgg cagctaacca
     6301 gatagcggcc gagctttact actgtttcgc catgacccaa atcgcctgcc agtctctttc
     6361 tcagcgaccg gatgatatcg agccgttatt tcgccattat cttcgaaaag cctgcctgcg
     6421 actcaatcat ccagtgccgg aaatagcggg ggaattactg aaaggaataa tgcgacgcgc
     6481 ctggccaagc aatgtgcgcg aactggccaa tgcggcggag ctttttgctg tcggcgtgct
     6541 gccgctggcg gaaacggtca acccgcagtt gcttctgcag gagccgaccc cgcttgaccg
     6601 gcgcgttgaa gagtatgagc gacaaattat taccgaagca ttaaatattc atcagggacg
     6661 aattaatgaa gtggcggagt acttgcaaat tccccgtaaa aaactttatc
//
LOCUS       DAJVSD010000241         6686 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.241, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000241 DAJVSD010000000
VERSION     DAJVSD010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6686)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6686)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6686
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.241"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..1167
                     /locus_tag="OQP62_003801"
     CDS             <1..1167
                     /locus_tag="OQP62_003801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1723225.1"
                     /translation="DFWAITIVSFIIFFVFYVLLTLLPIYIADRLHASADKAGLLVTC
                     FLAAAIVIRPFAGQWVGKYSNKKILVLSSLAFLVITALYPVCHSIESLLFIRVLHGIT
                     FGVITTVKGTISARLIPASRRGEGISFFSLAMGLAMVVGPWIGLNMARWDAFTAAFWL
                     CSAVAALGIVLSLIVTVPPVIRHADGSKPNLGFSAMFDRAALPFALVTFFMTFSYAGV
                     SAFLALYARELDLMAAASNFLLCYAILLMICRTFTGNICDKKGPKYVVYPCLLAFTIG
                     LVALGYTNGSIMMIISGGLIGIGYGSVTPVFQTQIISSVEPHKIGVANSLFFNAMDAG
                     MAIGAFIMGMMVESVGYRMIYVAGAVLVVLAGALYAVQMKKRGVMPLVSTSELH"
     gene            complement(1169..1423)
                     /gene="yfaE"
                     /locus_tag="OQP62_003802"
     CDS             complement(1169..1423)
                     /gene="yfaE"
                     /locus_tag="OQP62_003802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-like diferric-tyrosyl radical
                     cofactor maintenance protein YfaE"
                     /protein_id="HCS1723226.1"
                     /translation="MGRVTLRITGTQLLCQDEHPSLLAALESHNVEVEYQCREGYCGS
                     CRTRLVAGQVDWITEPLAFIQPGEILPCCCRAKGDIEIEM"
     gene            complement(1423..2553)
                     /gene="nrdB"
                     /locus_tag="OQP62_003803"
     CDS             complement(1423..2553)
                     /gene="nrdB"
                     /locus_tag="OQP62_003803"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006683700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HCS1723227.1"
                     /translation="MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQ
                     LSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISI
                     PELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDE
                     LIEMTSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFA
                     FAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDL
                     FVQAAQQEKEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIP
                     WINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL"
     gene            complement(2666..4951)
                     /gene="nrdA"
                     /locus_tag="OQP62_003804"
     CDS             complement(2666..4951)
                     /gene="nrdA"
                     /locus_tag="OQP62_003804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HCS1723228.1"
                     /translation="MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELR
                     SHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL
                     YHHVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNR
                     VTGEIYESAQFLYILVVACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTP
                     TRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHT
                     GCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMD
                     YGIQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYENDDSIRKQR
                     VKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLN
                     DVNDENGEIALCTLSAFNLGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAM
                     GRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACP
                     WFNETTYAKGILPIDTYKKDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSET
                     SSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLKDAYELLWEMPNNDGYLQLV
                     GIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAED
                     AQDDLAPSIQDDGCESGACKI"
     gene            complement(5306..6034)
                     /locus_tag="OQP62_003805"
     CDS             complement(5306..6034)
                     /locus_tag="OQP62_003805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-demethylubiquinone
                     3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol
                     methylase"
                     /protein_id="HCS1723229.1"
                     /translation="MNTEKPSVAHNVDHNEIAKFEAVASRWWDLKGEFKPLHRINPLR
                     LGYITERSGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESG
                     IEVEYVQETVEEHAAKHAQQYDVVTCMEMLEHVPDPQSVVHACAQLVKPGGEVFFSTL
                     NRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLSWVDETVLKEQHITGLHYNP
                     ITNTFKLGPGVDVNYMLHTRAKKA"
     gene            complement(6117..>6686)
                     /locus_tag="OQP62_003806"
     CDS             complement(6117..>6686)
                     /locus_tag="OQP62_003806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461217.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1723230.1"
                     /translation="ISENELSNILMISKTPIREAFIWLSYNENLVNIIPRSGTFVFSV
                     TDEDINDLIKMRVILEQGAIREAMEKNANNVIVELSNILSKSAKINAERDTQAYLKLD
                     HDFHYVFVKYADNKYISQAHLLISARLLAIRYRLDFTAEYITSSNRGHATILDMLKNN
                     NVEGVCNFITHHIGSGFTERARKLLALKA"
BASE COUNT         1500 a         1651 c         1742 g         1793 t
ORIGIN      
        1 gatttttggg caatcaccat agtaagtttt attatctttt ttgtttttta tgtactgcta
       61 actttattac ccatttatat cgctgaccgc ctgcatgctt ctgcagataa ggcaggattg
      121 ctagtgacat gtttcctggc cgcggcaatt gttattcggc cgtttgccgg gcagtgggtg
      181 ggaaaatatt cgaataaaaa gattctggtg ctctcttctc tggctttttt ggtgattacc
      241 gcgctgtatc cagtttgcca ttctatcgag tcgctgctct ttatccgcgt acttcatggg
      301 attacgtttg gtgttattac cacggtaaaa ggaactattt cagcgcggtt aattccggcc
      361 tcccgacgtg gagagggcat cagctttttc tctttagcga tgggcctggc gatggtcgta
      421 ggaccgtgga ttggtttgaa tatggcccgc tgggacgcgt tcactgccgc attctggctt
      481 tgttccgctg tagcggcgtt agggattgtg ctttccctga ttgtgacggt tcctccggta
      541 attcgtcatg ccgatggttc gaaaccgaat ctgggttttt ccgcgatgtt tgaccgcgcc
      601 gccttgcctt ttgcgctggt cacctttttt atgactttct cctatgccgg cgtgtcggct
      661 ttcctggcgc tgtatgctcg tgagctggat ttaatggcgg cggccagtaa tttcctgctg
      721 tgctacgcga ttttactgat gatatgccgt accttcaccg ggaatatttg tgataaaaaa
      781 gggccgaaat atgttgttta tccatgtctg ttggctttta ccatcggtct ggtggcgctg
      841 ggctacacca atggcagcat catgatgatt atttccggcg gtctcatcgg tatcggctac
      901 ggttcggtca cgccggtttt ccagacgcaa attatcagct cggttgaacc gcataaaatc
      961 ggtgtggcga attcactgtt ctttaacgcg atggacgccg gaatggcgat tggcgccttt
     1021 atcatgggaa tgatggttga gtcggttggc tatcgtatga tttatgtcgc tggcgcggtg
     1081 ctggtggtac tcgctggcgc actgtatgcc gtgcagatga aaaaacgtgg cgtgatgccg
     1141 ttggtttcca ccagcgagtt gcactgagtt acatctcgat ttcgatatcg ccttttgccc
     1201 tgcagcagca gggcaaaatc tctcccggct ggataaacgc taaaggttcc gtaatccagt
     1261 caacctgacc ggcaaccagc cgggtacgac aggagccgca atatccttcg cggcactgat
     1321 actccacctc aacgttatgc gattccagcg cggccagcag agaagggtgt tcatcctggc
     1381 acagcagctg tgtgccagtg atacgcagcg tgacgcgtcc catcagagct ggaaattact
     1441 cagatcgtcg gtatcgactt ccgaatcgat ttgtccgacc agataagaac taacttccac
     1501 ttcctgtggc gcaacctgaa cgttatcgga caccagccag gtattgatcc acgggattgg
     1561 gttggagcgg gtctggaacg gcagatccag acccactgcc tgcatacgaa tattcgtaat
     1621 atattcaacg tattgacaca ggatatcttt attcaggccg atcatcgaac cgtcgcggaa
     1681 cagatagtcc gcccactctt tttcctgctg cgccgcctgc acgaacaggt catagcattc
     1741 ctgtttacac tcttcggcga tttccgccat ctccgggtcg tccacgccgc tacgcaacag
     1801 gttcagcata tgttgcgtgc cggtcagatg cagcgcttcg tcacgggcga tcagacggat
     1861 aattttggcg ttgccttcca tcagttcacg ctcggcaaat gcgaaagagc aggcgaagct
     1921 gacgtagaag cggatggctt ccagcgcgtt cacgctcatc aggcacagat acagtttttt
     1981 cttcagctca cgcagattca cgacaaccgt tttgccatta acggtatggg tgccttcacc
     2041 gagcagatgc cagtaactgg tcatctcaat aagttcgtcg tagtaggcgg agataccttc
     2101 ggcgcgcttc tgaatttgct cattggtcac gatatcgtca aacacgaccg ccggatcgtt
     2161 gacgatgtta cgaataatgt gggtgtagga tcgtgagtga atcgtctcag aaaacgccca
     2221 ggtctctacc cacgtctcca gctccgggat ggaaatgagc ggcagcaggg cgacgttcgg
     2281 gctacgtccc tgaatggaat ccagcagcgt ctggtatttg aggttgctga tgaagatatg
     2341 tttttcgtgc tccggcaacg cctgatagtc gatacgatcg cgggagacgt cgacctcttc
     2401 cggacgccag aagaaagaga gctgtttttc gatcagtttt tcgaagatgt catatttctg
     2461 ctggtcatag cgtgcaacgt tgaccggctg gccaaagaac atgggttcct tgagctgatc
     2521 gtttttcgtt tgtgaaaaag tggtgtatgc cattgaagtg aatcctttat gggatgagcg
     2581 ccggatggcg gcgcaagcgc cttatccggc ctacaaaccg tacaatcgta ggccgggtaa
     2641 gcatagcgct acccggcact attcatcaga tcttacaagc gccgctttcg cagccatcgt
     2701 cctgaataga aggcgccaaa tcgtcctgcg catcttccgc gccgtcgcgg gtattttgat
     2761 agtacagagt tttcacgcca aacttatacg cggtgagcaa atctttcagc agttgctgca
     2821 tcggcacttt tcctgacggg aaacgtgacg gatcgtagtt ggtattagcg gaaatcgact
     2881 ggtcgataaa cttctgcatg atacccacca gttgcagata accgtcgttg ttcggcatct
     2941 cccacaacag ttcgtaagcg tctttcagat gctcataatc cggcacgacc tgacgcaaaa
     3001 taccgtcttt cgaggccttg atgctgacgt agccgcgcgg tggttcgata ccgttggtgg
     3061 cgttggagat ctgggatgac gtttccgacg gcattagcgc cgatagcgtg gagttacgca
     3121 gaccgtgggt tttgatcgac tcacgcagct gttcccagtc gtagtgcagc ggttcgttga
     3181 cgatcgcatc cagatctttt ttgtaggtgt cgatcggcaa aatgcctttt gcataggtgg
     3241 tttcgttgaa ccatgggcag gcgccttgct ctttcgccag ttcgttggac gctttaagca
     3301 gatagtactg aatggcttcg aaggttttat gcgtcagatt attggcgctg ccgtcggaat
     3361 aacgtttacc gtttttcgcc agccagtagg cgaagttaat cacgccaatg cccagcgtac
     3421 gacggcccat tgcgccgcgt ttggcagccg gaatcgggta atcctgataa tcgagcagag
     3481 catccaaagc gcgtactgcc agaatagcca gttcttccag ctcgtccaga gtcttaatgg
     3541 cacccaggtt gaaggcagac agcgtacaca acgcaatttc gccgttttca tcgttgacat
     3601 cgttcagcgg tttggttggc agggcaatct ccagacacag gttagactgg cgtaccgggg
     3661 cgacaaccgg atcgaacgga ctgtgagtat tgcagtggtc aacgttctgg atatagatac
     3721 gaccggtaga ggcgcgttcc tgcatcatca gcgagaacag ttcgaccgct ttcacacgct
     3781 gtttgcggat gctgtcgtcg ttttcatact tcacgtacag gcgttcgaat tcgtcctggt
     3841 cggcgaagaa tgcatcgtat agcccgggta catcggacgg actgaacagc gtaatgtcgc
     3901 cgcccttcag caggcgggtg tacatcagtt tgttgatctg tatgccgtag tccatgtgac
     3961 gtacgcggtt gccttccacg ccacggttgt ttttcagcac cagcaggctt tccacttcca
     4021 gatgccacat cgggtagaac agtgtcgccg cgccgccgcg cacgccgccc tgcgagcagg
     4081 atttcaccgc cgtctggaag tgcttgtaga acggaataca gccggtgtgg aacgcctcgc
     4141 cgccacgaat cgggctaccc agcgcacgaa tgcggccagc gttgatgccg ataccggcgc
     4201 gctgggaaac gtatttcaca atcgcgctgg aggtggcgtt gatggaatcc agactgtcgc
     4261 cacactcgat cagtacgcag gagctgaact gacgggtcgg ggtacgcacg ccggacatga
     4321 tgggcgtcgg cagcgagatt ttgaacgtag agaccgcatc gtaaaaacgt tttacatagt
     4381 caagacgcgt ttcacgcgga tagttagaga acaggcaggc cactaccaga atgtagagga
     4441 actgcgcgct ttcatagatt tcgccggtca cgcggttttg caccagatat ttcccttcca
     4501 gctgcttaac ggcagcgtag gagaaggtca tatcgcgatc gtgaacgata aacgaatcca
     4561 tctgcttgaa ctcttcttcc gtgtagtctt ccagcagatg attgtcgtat ttgccaagct
     4621 caaccatttt taccacatgg tggtaaagtg cgggcggctc aaactggccg aaggctttct
     4681 tacgcaggtg gaaaatcgcc agacgcgcag ccaggtattg ataatccggc gcatcgcgag
     4741 agatcaggtc tgcggcggcc ttaatgatag tttcatggat atcggaggtc ttaatcccat
     4801 cataaaactg aatatgcgag cgtagctcga cctgagaaac cgatacgtta ttcagtcctt
     4861 ctgccgccca atcaagcacg cgatgaattt tgtcgagatt gatgcgctca gtacggccgt
     4921 cacgctttgt caccagcaga ctctgattca tgtagttttc tacctgttta cctgtccgtg
     4981 aaagaaaaat atcccccccg cttatccaca acgccacgtt gtgactaact ctgtggataa
     5041 atactatata tagggggtaa tcgataagtg aaacgctata tggtgagtat tctagtaggg
     5101 attcttttga gtacaagagt tgattttggc gttaaattgc ggttgtaaaa gagtaagaat
     5161 cgctaaatgc gcgtctgata aggcctggag aggatgtcaa caattcataa aaaaatcaaa
     5221 atttgatcga atgctgattt tttcatcgaa gagaaaggtt gcgcccgatg atctaacgca
     5281 acccttatag gaaaattctt tgatgtcagg cttttttagc gcgggtatgc aacatgtagt
     5341 taacgtctac tccgggaccg agtttgaaag tattggttat cgggttgtag tgcagcccgg
     5401 tgatatgttg ctctttcagg acggtttcat ctacccagct taacagttca gcaggcttaa
     5461 tgaatttctt cacgtcgtgc gtgccttttg gcaccatgcg cagaatatac tcagcgccga
     5521 cgaccgccat cagccaggat ttcccattgc ggttcaacgt tgagaagaac acctcgccgc
     5581 cgggtttaac cagttgggcg caggcgtgga cgaccgattg cggatcggga acgtgctcca
     5641 gcatttccat acaggtgacg acgtcgtatt gctgggcgtg ttttgccgca tgttcctcaa
     5701 ccgtctcctg cacgtactct acctcaatgc cgctttccag cgcatgcagt ttggcgacct
     5761 gcaaaggctc aaagcccata tccagcccgg taacggtagc gccttcgcgc gccatgctct
     5821 ccgccagaat accgccgcca cagccgacgt cgagcacctt tttaccgaac aggccgcctg
     5881 agcgctcagt aatgtagcca aggcgtaggg ggttgatgcg atgcaatggc ttgaattcgc
     5941 ccttcagatc ccaccagcgc gacgcgacgg cttcgaattt ggcgatttca ttatggtcaa
     6001 cgttgtgagc taccgacggt ttttcagtgt tcatgagtac atgagattcc gctattgatc
     6061 tatcggggca gtatagcagg tgcaaagtcg ctgcgttata tctactgccg tctttattac
     6121 gctttcagcg caagaagttt tcttgcgcgt tctgtaaaac cgctaccgat gtggtgcgtg
     6181 ataaaattac agacgccctc gacgttgttg ttttttaaca tatctaaaat agtggcatgt
     6241 ccacggttag agctggtgat atattcagcg gtaaaatcca gtctgtagcg aattgccaat
     6301 aaacgtgcag agatcaacag gtgtgcttgt gaaatgtatt tattatcggc atatttcaca
     6361 aaaacataat gaaaatcatg atccagtttg aggtaagctt gcgtatctcg ctctgcatta
     6421 atttttgctg acttcgataa aatattgctt aattcgacta tgacattgtt agcatttttc
     6481 tccatcgctt cacgaattgc gccctgttca aggataaccc tcattttgat gagatcattg
     6541 atatcctcgt cggtgacaga aaaaacaaat gtcccactgc ggggaatgat gttgaccagg
     6601 ttttcattat agctcagcca aataaaagct tcacgaattg gtgttttact tatcatcaga
     6661 atatttgata gttcattttc actgat
//
LOCUS       DAJVSD010000242         6682 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.242, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000242 DAJVSD010000000
VERSION     DAJVSD010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6682
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.242"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            42..1277
                     /gene="moeA"
                     /locus_tag="OQP62_003807"
     CDS             42..1277
                     /gene="moeA"
                     /locus_tag="OQP62_003807"
                     /EC_number="2.10.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HCS1723231.1"
                     /translation="MEFSAGLMPLETALTQMLSRITPLTAVETLPLMNCFGRILATDI
                     VSPLDVPGFDNSAMDGYAVRVADLSADKPLPVAGKAFAGQPYQGEWPAGTCIRIMTGA
                     PVPAGCEAVVMQEQTEQTDDGVRFTTDVRCGQNIRRRGEDIRQDAVVFPAGTRLTTAE
                     LPVLASLGIADAQVVRKVRVALFSTGDELQLPGQLLEAGQIYDTNRLTIHLMLQQLGC
                     EVINLGIIPDDPGKLRAAFVDADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKL
                     AIKPGKPFAFGKLSNSWFCGLPGNPVSAALTFYQLVQPLLAKLGGNTASAVPPRQRVR
                     TTSRLKKTPGRLDFQRGILQRSANGELEVTTTGHQGSHIFSSFNLGNCFIVLERERGN
                     VEPGEWVEVEPFNALFGGL"
     gene            1277..2026
                     /gene="moeB"
                     /locus_tag="OQP62_003808"
     CDS             1277..2026
                     /gene="moeB"
                     /locus_tag="OQP62_003808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HCS1723232.1"
                     /translation="MAELSDQEMLRYNRQIILRGFDFEGQEALKDARVLVVGLGGLGC
                     AATQYLAGAGVGQLTLLDFDTVSVSNLQRQTLHSDATVGQPKVESARDALARINPHIT
                     ITPVNARLDDDAMTSLIAGHSLVLDCTDNVSVRNQLNAGCYIAKVPLISGAAIRMEGQ
                     VTVFTYRENEPCYRCLSRLFGENALTCVEAGVMAPLIGVIGSLQAMEAIKLLAHYGQP
                     ASGKIVMYDAMTCQFREMKLMRNPGCEVCGQ"
     gene            2304..3203
                     /locus_tag="OQP62_003809"
     CDS             2304..3203
                     /locus_tag="OQP62_003809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl-radical enzyme activating protein"
                     /protein_id="HCS1723233.1"
                     /translation="MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARAQDL
                     LYDARLCLEGCDLCAQAAPDVIERALNGLLIHREKLTDAHFSILAHCCPTQALTVCGE
                     IKSVDEIMATVLRDKPFYDRSGGGLTLSGGEPFMQPELAAELFKASHDAGIHTAVETC
                     LHVPWKYIAPSLPYIDLFLADLKHVADGPFKQWTDGSASRVLENLRKLAAAGKKMVIR
                     VPLIQGFNADEETIKAITDFAADELHVGEIHFLPYHTLGINKYHLLSQPYHAPDKPLD
                     APALLDFAQKYACQKGLTATLRG"
     gene            3209..5641
                     /locus_tag="OQP62_003810"
     CDS             3209..5641
                     /locus_tag="OQP62_003810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl radical protein"
                     /protein_id="HCS1723234.1"
                     /translation="MTQLKLDTLSDRIKAHKTALVHIVKPPVCTERAQHYTEMYQQHL
                     DKPIPVRRALALAHHLAERTIWIKHDELIVGNQASEVRAAPIFPEYTVSWIEKEIDDL
                     ADRPGAGFSVSEENKRILHDVCPWWRGQTVQDRCYGMFTDEQKGLLATGIIKAEGNMT
                     SGDAHLAVNFPLLLEKGLDDLRDKVAERRSRINLTVLEDLHGEQFLKAIDIVLDAVSQ
                     HITRFAALARQMAGEESRESRRKELLTIAENCEVIAHQPPQTFWQALQLCYFIQLILQ
                     IESNGHSVSFGRMDQYLYPYYRRDVELNQTLDREHAIELLHSCWLKLLEVNKIRSGSH
                     SKASAGSPLYQNVTIGGQNLINGQPMDAVNPLSYAILESCGRLRSTQPNLSVRYHAGM
                     SNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKW
                     GYRCTGMSFINFARVMLAALEGGRDATSGKVFLPQEKALSAGNFNNFDEVMAAWDTQI
                     RYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGI
                     ANLGNSLAAVKKLVFEQGVIGQQQLAAALADDFDGLPHEQLRQRLINGAPKYGNDDDS
                     VDTLLARAYQTYIDELKQYHNPRYGRGPVGGNYYAGTSSISANVPFGAATMATPDGRK
                     AHTPLAEGASPASGTDHLGPTAVIGSVGKLPTGSILGGVLLNQKLNPTTLENESDKQK
                     LMVLLRTFFEVHKGWHIQYNIVSRETLLDAKKHPDQYRDLVVRVAGYSAFFTALSPDA
                     QDDIIARTEHML"
     gene            complement(5719..6528)
                     /locus_tag="OQP62_003811"
     CDS             complement(5719..6528)
                     /locus_tag="OQP62_003811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HCS1723235.1"
                     /translation="MTVNVVVTDMDGTFLDDAKQYDRVRFMAQYQELKKRNIEFVVAS
                     GNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQL
                     NFVACGLKSAYVSKNAPETFVALMAKHYHRLQPVNDYHDIDDILFKFSLNLPDEQIPL
                     VIDKLHVSLDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWNRSPQNVVAIGDSGN
                     DAEMLKMAHYSFAMGNAADNIKALSRYHTDDNNHQGALNVIQAVLDGTDPF"
BASE COUNT         1546 a         1838 c         1812 g         1486 t
ORIGIN      
        1 cataatagcc ggattcgatt ttgcctcgca ggagtatgtt catggaattt tccgccggat
       61 tgatgccgct tgaaacggcg ctgacccaga tgctttcacg tattaccccg ctcaccgccg
      121 tagaaacgtt gccgctgatg aactgctttg gccgcatcct ggcgaccgat atcgtatctc
      181 cccttgatgt ccccggcttt gataattcag ctatggatgg ttatgcggta cgtgtggcgg
      241 atttgtccgc cgataagccg ctgcccgtcg ccggcaaagc atttgccggt cagccttacc
      301 aaggagaatg gcctgcggga acctgtattc gcattatgac cggcgccccg gtgccggcag
      361 gttgcgaggc ggtcgtcatg caagagcaga cggaacaaac tgatgacggc gtgcgtttta
      421 ccaccgatgt tcgttgcgga caaaacatcc gccgccgcgg cgaggatatt cgccaggatg
      481 cggtggtctt tccagccggt acgcgcctga ctactgccga actgccggtg ctggcgtcgc
      541 tgggaattgc cgatgcgcag gtagtacgta aagtgcgcgt agcgctgttc tcgaccggcg
      601 acgagctcca gcttccgggc cagctgctgg aggcgggaca aatttatgac actaaccgtc
      661 taactataca tttgatgctg caacagcttg gctgcgaagt gatcaattta ggcattattc
      721 ctgacgatcc cggtaagctt cgcgccgcgt ttgtcgacgc cgacagccag gccgatgtag
      781 tgataagctc cggcggcgtc tcggttggtg aagcggacta taccaaaacc atccttgagg
      841 agctgggcga aatcgccttc tggaagctgg ctatcaagcc aggcaaaccg tttgccttcg
      901 gcaagctcag taatagctgg ttctgtggcc tgccggggaa tccagtctct gcggcgctca
      961 cgttttatca actggttcag cccttactgg cgaagcttgg cggcaatacg gcaagcgctg
     1021 taccgccgcg ccagcgtgta cgcacaacat ctcgcctgaa gaaaacgccg gggcgtctcg
     1081 atttccagcg cggcatcctg caacgtagcg ccaacggcga actggaggtc acgaccaccg
     1141 gacaccaggg ctcacatatt ttcagctcgt ttaatctggg caactgcttt attgtgctgg
     1201 agcgtgaacg cggcaatgtt gagccgggag aatgggtgga agtcgagccg tttaatgctc
     1261 tgttcggagg cctgtaatgg cggaacttag cgaccaggag atgctgcgct ataaccgaca
     1321 aattattctg cgcggcttcg attttgaagg gcaggaagcg ttaaaagatg cgcgggtatt
     1381 agtggtcggg ctgggcggac tcggctgcgc ggcaacgcag tatctggccg gcgctggcgt
     1441 cgggcaactg acgctactcg attttgatac cgtttccgtt tccaatctcc agcgtcaaac
     1501 cttgcacagc gacgccacgg tcgggcagcc aaaggtagag tccgcccgcg acgcgctggc
     1561 gcgaatcaac ccgcatatta ccattacgcc cgttaacgcg cggctggacg acgacgctat
     1621 gaccagcctg attgccgggc attcgctggt gctggactgt accgataacg ttagcgtacg
     1681 taatcaactt aacgccgggt gctatatcgc gaaagtgccg ctaatctccg gcgcggccat
     1741 tcgtatggaa ggacaagtta ccgtctttac gtatcgggaa aacgaaccct gttaccgctg
     1801 cctgagccgt ctgtttggcg aaaacgctct gacctgcgta gaagctggag tgatggcgcc
     1861 gctgattggc gtgatcggtt cgctacaggc aatggaggcc attaagctac tggcgcatta
     1921 cggtcagcct gccagcggaa aaatcgtcat gtacgatgcg atgacctgtc agttccgcga
     1981 aatgaagttg atgcgcaacc ccggctgtga ggtctgcggg cagtagtcac tttacggata
     2041 aacataccaa agcacggtct atggccgtgc tgtatcaaca gataattact gccatcagac
     2101 gcaaagccag cttacccaag ctccgactga cgatcggctc aagcagcgcg gcatcatctt
     2161 aaacgccata tcacagcctc aacccgtgat gttgtacctc atttaacgcc tctttgtcag
     2221 aacctctcca ttcgttgacg cacatcaaga taactttcat tcgaaagtaa tttaatcttt
     2281 acatgaaata agagaggccg tttatgatct tcaatattca gcgctattcc acccacgatg
     2341 gccccggtat ccgtaccgta gtatttctca aaggctgttc gttgggctgt cgctggtgcc
     2401 agaacccgga aagccgcgcc cgcgctcagg atctgttata cgacgcgcgg ctgtgtctcg
     2461 aaggatgcga cctgtgcgcg caagccgcgc cggacgtcat tgagcgcgcg ctaaacggcc
     2521 tgctcatcca tcgcgagaaa ctgaccgacg cccatttttc catcctggcg cattgctgcc
     2581 ccacacaggc gttaaccgtg tgcggcgaaa taaaaagcgt ggatgagatc atggcgacgg
     2641 tactgcgcga taaacctttt tacgatcgca gcggcggcgg tcttacgctt tccggcggcg
     2701 aaccgtttat gcagccggag ctggcggcag agctgtttaa agccagccat gacgccggta
     2761 ttcatacagc ggttgagacc tgtctgcatg tcccatggaa atacattgcg ccctcactgc
     2821 cttatatcga tctgtttctg gctgatttga aacacgtcgc cgacgggccg tttaagcagt
     2881 ggaccgatgg cagcgcctcg cgggtgctgg aaaatctcag gaaactcgcc gccgcgggca
     2941 aaaaaatggt gattcgcgtc ccgctgattc agggatttaa tgccgatgag gagaccatta
     3001 aagccattac cgactttgcc gccgacgaac tgcacgtcgg ggaaattcat tttctgccct
     3061 accacacgct gggcatcaat aaataccact tactcagtca gccctatcat gccccggata
     3121 aaccactgga tgcaccggcg ttacttgatt ttgcccagaa gtacgcctgc caaaaaggtt
     3181 taaccgcgac cctacgagga taattatcat gacccaactg aaactggaca cgctcagtga
     3241 ccgcattaag gcgcacaaaa ccgcgctggt acatatcgtg aaaccgccgg tctgtaccga
     3301 gcgcgcgcag cattataccg aaatgtatca gcaacatctg gataaaccga ttccggtacg
     3361 ccgcgcgctg gcgctggccc atcacctggc ggaacgcact atctggataa aacacgatga
     3421 actgatcgtc ggcaaccagg caagtgaagt ccgcgccgcg ccgattttcc cggaatatac
     3481 cgtctcgtgg attgaaaaag agatcgacga cctggcagac cggcccggcg caggtttttc
     3541 cgtaagtgaa gaaaacaaac gtattctgca cgacgtctgt ccgtggtggc gcggtcaaac
     3601 cgtccaggat cgctgctacg gcatgtttac cgatgaacaa aaagggcttc tggcgactgg
     3661 cattatcaaa gccgaaggta atatgacttc cggtgacgcg cacctggcgg tgaacttccc
     3721 gctgctgctg gaaaaagggc ttgatgacct gcgcgataaa gtcgccgagc gccgctcacg
     3781 catcaacctg accgtgctgg aagatctgca tggcgagcag ttcctgaagg cgattgatat
     3841 tgtgctggac gcggtaagcc agcatatcac gcgctttgcc gcgctggcgc gccagatggc
     3901 gggcgaagag tcccgtgaaa gccgtcgtaa agagctactt accatcgcgg aaaactgcga
     3961 ggtgatcgcc caccaaccgc cgcagacctt ctggcaagca ctgcaattgt gctacttcat
     4021 ccaactgatt ctacaaattg agtctaacgg tcactcggtg tcatttggtc gtatggacca
     4081 gtatctttac ccctattatc gtcgcgatgt cgaactaaac cagacgctgg atcgtgagca
     4141 cgccattgaa ctgctgcaca gctgctggct gaaactgctg gaagtaaaca agatccgctc
     4201 cggttcgcac tctaaagctt ccgcgggcag cccgctgtat caaaacgtca ccattggcgg
     4261 tcagaatctt atcaacggtc agccaatgga cgcagtgaat ccgctgtctt acgctattct
     4321 ggagtcctgc ggacgtttgc gttctaccca gcccaacctc agtgtgcgtt atcacgccgg
     4381 aatgagtaac gatttccttg acgcctgcgt ccaggtcatc cgctgcggct ttgggatgcc
     4441 ggcgtttaac aatgatgaaa tcgtcatccc ggaatttatc aagttgggga tcgaaccaca
     4501 ggacgcttac gattacgcgg cgatcggctg tatcgaaacc gccgtcggcg ggaaatgggg
     4561 ttatcgctgc accggcatga gctttattaa cttcgcccgc gtcatgctgg cggcgctgga
     4621 aggcggtcgc gacgccacca gcggcaaggt atttctgccg caggaaaagg cgctctccgc
     4681 aggcaacttt aacaattttg acgaagtgat ggccgcctgg gatacccaaa ttcgctacta
     4741 cacgcgcaaa tcgatcgaaa ttgagtatgt ggtcgacacc atgctggaag agaacgtcca
     4801 cgatattctg tgctcagcgc tggtagacga ctgtattgaa cgcgcgaaga gtatcaagca
     4861 aggcggcgca aaatatgact gggtatccgg tctgcaggtc ggtatcgcca acctgggcaa
     4921 cagcctcgcc gccgtgaaaa aactggtctt cgaacagggc gttatcggtc aacagcagct
     4981 tgccgccgcg ctggccgatg actttgacgg gctgccccat gagcagctgc gccagcgtct
     5041 gattaacggc gcgccgaaat acggtaacga cgatgacagt gtcgataccc tgctggcgcg
     5101 cgcttatcag acctatattg atgagctgaa gcaataccat aacccgcgct atggtcgtgg
     5161 ccctgtgggc ggcaactatt acgccggtac gtcctctatc tcagcaaacg tgccatttgg
     5221 cgccgcaact atggctaccc cggatggtcg caaagcgcat acaccgctgg cggaaggcgc
     5281 aagccctgca tcgggtacgg atcatctcgg cccgacggcg gtgattggtt ccgtaggcaa
     5341 attacctacc ggttccattc tcggcggcgt gctgctcaat cagaaactga acccaacgac
     5401 gctggaaaac gaatccgaca aacagaaact gatggttctg ctacggacgt tctttgaggt
     5461 gcataaaggc tggcatattc agtacaacat cgtgtcacgc gaaacgctgc tggatgcgaa
     5521 aaaacatccg gaccagtacc gcgatctggt cgtgcgtgtg gcaggctact ccgccttctt
     5581 caccgcgctg tcgccggacg cgcaggacga tatcatcgcc cgtaccgaac atatgctgta
     5641 atttgcccag gcgccatcgg caatatgtcc gaactgcctg atggcgctac gcttaacagg
     5701 cctacgcagg cctgttaatc agaagggatc ggtgccgtca agcacggcct gaatgacgtt
     5761 gagcgcgcct tgatggttat tatcatcagt gtgataacgt gaaagcgctt tgatattgtc
     5821 tgcggcattg cccatggcaa aagagtaatg cgccattttc aacatttccg catcattacc
     5881 gctgtcgcca atggcgacga cattctgtgg cgacctgttc cagcgcttta acagacgact
     5941 gatgccattc gctttatgca gtcccgggat aatcaggtcg ataaaaccga agccgctggt
     6001 gacaggcttc atgatgccat ccagagatac gtgcagtttg tcgataacca gcggaatttg
     6061 ttcatcgggc aaattcaggg agaacttaaa caggatatcg tcaatgtcgt gataatcgtt
     6121 taccggctgc aggcggtgat aatgtttggc catcagcgcc acgaaagtct cgggagcgtt
     6181 tttgctgaca taagcgcttt tcagaccgca ggcgacgaag ttaagctgct tatccttcag
     6241 cagttcgcca atcacaatac gcgattcatg ccgggttagc tctccgtgaa acaactgctt
     6301 gccatgttca tacaccagcg cgccattttc tgcgacgaag gaaatttcgt ctttcagctc
     6361 ggggaagaag gagatcaact gatagtactg attaccgctg gcgaccacaa attcgatatt
     6421 acgttttttc agttcctggt attgcgccat gaagcgtaca cgatcgtact gcttggcatc
     6481 gtcgagaaaa gtgccgtcca tatcggtaac gacaacgtta acggtcatac ttaagctcct
     6541 ggctgtaact gcgaccagaa acattttaat aacaatgtga gcagaaccac aaatttattt
     6601 cgaatgaaaa gtggctgaac gaaaggaata gccgcataag acattaaggc gtcctggcca
     6661 ccttacgttt tcctctcgct tc
//
LOCUS       DAJVSD010000243         6583 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.243, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000243 DAJVSD010000000
VERSION     DAJVSD010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6583
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.243"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            25..1161
                     /locus_tag="OQP62_003812"
     CDS             25..1161
                     /locus_tag="OQP62_003812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpC"
                     /protein_id="HCS1723236.1"
                     /translation="MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYF
                     SDDKGSDGDQTYMRIGFKGETQVNDQLTGYGQWEYQIQGNQTEGSNDSWTRVAFAGLK
                     FADAGSFDYGRNYGVTYDVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGL
                     VDGLDFALQYQGKNGSVSGENTNGRSLLNQNGDGYGGSLTYAIGEGFSVGGAITTSKR
                     TADQNNTANARLYGNGDRATVYTGGLKYDANNIYLAAQYSQTYNATRFGTSNGSNPST
                     SYGFANKAQNFEVVAQYQFDFGLRPSVAYLQSKGKDISNGYGASYGDQDIVKYVDVGA
                     TYYFNKNMSTYVDYKINLLDKNDFTRDAGINTDDIVALGLVYQF"
     gene            1276..2328
                     /gene="apbE"
                     /locus_tag="OQP62_003813"
     CDS             1276..2328
                     /gene="apbE"
                     /locus_tag="OQP62_003813"
                     /EC_number="2.7.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase ApbE"
                     /protein_id="HCS1723237.1"
                     /translation="MKMTFCRAVCLAAAFLLMGCDEAPETTTASPAAQVLEGKTMGTL
                     WRVSVVGIDAKRAAELQTKIQTQLDADDWLLSTYKNDSALMRFNHSRSLAPWPVSEAM
                     ADIVTSALRIGAKTDGAMDITVGPLVNLWGFGPDRQPLHIPTPAQIDAAKAKTGLQHL
                     QVIDRAGHQFLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGIARYLVSVGGALSSRG
                     MNAQGLPWRVAIQKPTDRENAVQAIVDINGHGISTSGSYRNYYELDGKRVSHVIDPQT
                     GRPIEHNLVSVTVIAPTALEADGWDTGLMVLGTQKAQEVVRREGLAVFMIMKEGEGFK
                     TWMSPQFKTFLVSDKN"
     gene            2409..3470
                     /gene="ada"
                     /locus_tag="OQP62_003814"
     CDS             2409..3470
                     /gene="ada"
                     /locus_tag="OQP62_003814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-binding transcriptional
                     regulator/O6-methylguanine-DNA methyltransferase Ada"
                     /protein_id="HCS1723238.1"
                     /translation="MMKKALLTDDECWLRVQARDASADGRFVFAVRTTGVFCRPSCRS
                     KRALRKNVRFFANAQQALDAGFRPCKRCQPDNARAQQRRLDKIACACRLLEQETPVTL
                     ASLAQAVAMSPFHLHRLFKASTGMTPKGWQQAWRARRLREALAKGEPITAAIYRAGFP
                     DSSSYYRHADQTLGMTAKQFRKGGDNVSVRYALTDWVYGRCLVAESGRGICAILPGDS
                     DDALLAELHTLFPAARHEPADAPFQQRVRQVVAAINTRDVLLSLPLDIQGTAFQQQVW
                     QALCAIPCGETVSYQQLAATIGKPTAVRAVASACGANKLAMVIPCHRVVRRDGALSGY
                     RWGVRRKAQLLKREAQKEE"
     gene            3473..4123
                     /gene="alkB"
                     /locus_tag="OQP62_003815"
     CDS             3473..4123
                     /gene="alkB"
                     /locus_tag="OQP62_003815"
                     /EC_number="1.14.11.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA oxidative demethylase AlkB"
                     /protein_id="HCS1723239.1"
                     /translation="MLDLFADEAPWQEPLAPGAVVLRRFAFRAAQSLLDDIGFVASQS
                     PFRQMVTPGGYTMSVAMTNCGALGWTTDGHGYCYAVRDPLTDKPWPALPLSFASVCRQ
                     AAIAAGYASFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGVPAVFQFGGLR
                     RSDPLQRILLEHGDIVVWGGESRLFYHGIQPLKAGFHPMTGEFRYNLTFRQAAEKE"
     gene            4199..5842
                     /locus_tag="OQP62_003816"
     CDS             4199..5842
                     /locus_tag="OQP62_003816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HCS1723240.1"
                     /translation="MELLILVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETV
                     DTTVMVLPEFLGLLLLLMVVTLGSQLALTALGHHFVYRLRSEFIKRILDTHVERIEQL
                     GSASLLAGLTSDIRNITIAFVRLPELVQGIVLTVGSAAYLAMLSTKMLLVTAIWMAVT
                     IWGGFVLVARVYQHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEQIFQQCYTPDA
                     KEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFWMANSLGWADTNVAATYSLTLLFLR
                     TPLLSAVGALPTLLTAQVAFNKLNKFALAPYKPDFPQPKAFPDWKTLELRNVVFHYQD
                     NAFSVGPINLTIHRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGTILLDGQPVAAGQP
                     EDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEKWLEHLKMTHKLELNDGCILNLKL
                     SKGQKKRIALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQEMGKTIFAISH
                     DDHYFIHADRLLEMRNGQLTELTGDERDAASRDAVARTA"
     gene            complement(6051..6545)
                     /gene="eco"
                     /locus_tag="OQP62_003817"
     CDS             complement(6051..6545)
                     /gene="eco"
                     /locus_tag="OQP62_003817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease inhibitor ecotin"
                     /protein_id="HCS1723241.1"
                     /translation="MKMFVPAVVFAALASASAWANNGDTAQPLEKIAPYPQAEKGMKR
                     QVITLTPQQDESTLKVELLIGQTLNVDCNQHRLGGTLETKTLEGWGYDYYVFDNVTSP
                     VSTMMACPEGKKEQKFVTAWLGEDGMLRYNSKLPIVVYTPANVDVKYRIWKADANVQN
                     AIAR"
BASE COUNT         1391 a         1729 c         1950 g         1513 t
ORIGIN      
        1 ggcatataac agagggttaa taacatgaaa gttaaagtac tgtccctcct ggtaccagct
       61 ctgctggtgg cgggcgcagc gaatgcggct gaaatttata ataaagacgg caacaaatta
      121 gacctgtttg gtaaagttga tggcctgcac tacttctctg acgacaaagg cagcgacggc
      181 gaccagacct acatgcgtat cggcttcaaa ggcgaaacgc aggttaacga tcagctgacc
      241 ggttatggcc agtgggaata tcagattcag ggcaaccaga ctgaaggcag caacgactcc
      301 tggacgcgtg tggcgtttgc gggtctgaaa ttcgctgacg caggttcctt cgattatggt
      361 cgtaactacg gcgtaaccta tgacgtgacc tcctggaccg acgttctgcc ggagttcggc
      421 ggcgacacct acggcgctga caactttatg cagcagcgtg gtaacggcta tgctacctac
      481 cgtaacaccg acttcttcgg tctggtggat ggtctggact tcgcgttgca gtatcagggc
      541 aaaaacggca gcgtgagcgg tgaaaacacc aacggtcgca gcctgctgaa ccagaacggc
      601 gacggttacg gcggatcgct gacttatgca atcggcgaag gcttctctgt cggtggcgct
      661 atcaccacgt ctaaacgtac tgccgatcag aacaacaccg ctaacgctcg cctgtatggt
      721 aacggcgatc gcgccacggt ttacaccggc ggcctgaaat acgatgcgaa caacatctat
      781 ctggcagcgc agtattctca gacctataac gcaacccgtt ttggtacctc taacggcagc
      841 aacccgtcca cctcttacgg ttttgccaac aaagcgcaga actttgaagt ggttgctcag
      901 taccagttcg actttggtct gcgtccgtct gtggcttacc tgcagtctaa aggtaaggac
      961 atcagcaacg gctacggcgc cagctatggc gaccaggaca tcgtaaaata cgttgatgtc
     1021 ggcgcgactt actacttcaa caaaaacatg tccacctatg ttgattacaa aatcaacctg
     1081 ctggataaaa acgactttac ccgcgatgcg ggcatcaaca ccgacgacat cgtagcgctg
     1141 ggtctggttt accagttcta atcagcaaaa gatgttgcta aagggcctgc gggccctttt
     1201 ttcatgcctt attccggcgt acaaatacga cgttttgata tacgcttgcg tccattcgaa
     1261 tgaggataaa cagcgatgaa aatgactttt tgccgggccg tgtgtctggc agcggctttt
     1321 ttacttatgg gctgcgatga ggctcccgaa acgacaacag cgtcacctgc cgctcaggtg
     1381 ctggaaggta aaacgatggg aaccctctgg cgggtgagcg tggttggtat cgatgcgaaa
     1441 cgtgccgcag agttacagac taaaatccag actcagcttg atgctgatga ttggttgctt
     1501 tctacctata aaaatgactc cgcgctgatg cgttttaacc attcacgcag tcttgcgccc
     1561 tggccggtca gcgaagccat ggcggatatc gtgacctcgg cgctgcgtat tggcgcgaag
     1621 acggacggcg cgatggatat caccgtgggc ccgctggtca atctgtgggg gtttggaccg
     1681 gatcggcagc cgctgcatat cccaacacca gcacaaatcg atgcggcaaa agcgaaaaca
     1741 ggcctgcaac atttgcaggt tatcgacagg gctggacatc agtttttgca aaaagatctg
     1801 ccggatcttt atgttgatct ctccacggtc ggggagggct atgcggcgga tcatctggcg
     1861 cgtctgatgg agcaggaggg cattgcgcgt tatctggtct cggtgggcgg cgcattaagc
     1921 agtcgcggga tgaatgcgca ggggctgccg tggcgcgtcg cgattcagaa gccgaccgac
     1981 cgggaaaacg cggtgcaggc gattgtggat atcaacgggc atggcatcag cacctccggc
     2041 agctaccgta actattacga gctggatggc aagcgcgtat cgcacgttat cgatccgcaa
     2101 acggggcgcc ccattgaaca caatctggta tcggttacgg tcatcgcgcc aacggcgctg
     2161 gaagcggacg gctgggacac cggcctgatg gtgctcggta cgcaaaaggc gcaagaggtc
     2221 gtgcggcggg aagggctggc ggtctttatg atcatgaaag aaggtgaagg ctttaaaacc
     2281 tggatgtcgc cgcagttcaa aacattcctg gtgagcgata agaattaaaa cgcaagatta
     2341 cgggtttttg tgggcggatt tacggacaca ctgcatgtaa gcaagcacta tgcttaatga
     2401 aggagtctat gatgaaaaaa gcgttactta ccgatgatga atgctggctg cgggtgcagg
     2461 cgcgcgatgc cagcgcggat gggcgtttcg tttttgcagt gcgaaccact ggcgtttttt
     2521 gccgcccttc ttgtcgctcg aagcgggcgt tacgtaaaaa tgttcgcttt tttgccaacg
     2581 cgcagcaggc gctggacgcc ggttttcgcc cctgcaagcg ctgtcagccg gataatgcgc
     2641 gcgcgcagca acggcggttg gataagattg cctgcgcctg ccgtttactt gagcaggaga
     2701 cgccggtaac gctggcgtct ctggcgcagg cggtggcaat gagtccgttt catctgcacc
     2761 gtttgtttaa agcgagcacc ggaatgacgc cgaaagggtg gcagcaggcg tggcgcgccc
     2821 ggcggctgcg tgaggcgttg gcgaaaggag agccgatcac ggcggctatt taccgcgccg
     2881 gcttcccgga tagcagtagc tactatcgtc atgccgacca gacgctgggc atgacggcaa
     2941 aacagtttcg caaaggcggc gataatgtct ccgttcgcta tgcgctgacg gactgggttt
     3001 acggacggtg cctggtggcg gagagcgggc gggggatttg cgcgattctc cccggtgata
     3061 gcgacgatgc gctactggcc gaattacaca cccttttccc ggcggcccgc cacgaacctg
     3121 ctgacgcgcc ttttcagcaa cgggtgcggc aggttgtcgc ggctatcaac acacgcgatg
     3181 tgctgctctc gttgccgctg gatatccagg gaaccgcgtt tcaacagcag gtctggcagg
     3241 cgttatgcgc gattccctgc ggcgaaaccg taagctatca acagcttgcc gcgactatcg
     3301 gcaaacccac ggcagtacgc gcggtcgcca gcgcgtgcgg cgcgaataaa ctggcgatgg
     3361 tgatcccgtg tcatcgggtc gtgcgtcgcg atggcgcgct ctccggttat cgttggggcg
     3421 tgcgtcgaaa agcgcagcta ttaaagcgag aagcgcaaaa agaggagtag caatgctgga
     3481 tctgtttgct gatgaagcgc cctggcaaga gcccctggcg cctggcgcgg tggtgttgcg
     3541 ccgctttgcg tttcgcgcgg cgcagtcgct attagacgat atcggatttg tcgccagtca
     3601 gtcaccgttt cgtcagatgg tgacgccggg cggctacact atgtcggtgg cgatgaccaa
     3661 ctgcggcgcg ttagggtgga ccaccgatgg tcacggttat tgttatgccg tgcgcgatcc
     3721 gttgaccgat aaaccctggc ctgcgctgcc gttatcgttt gccagcgtat gtcgtcaggc
     3781 ggcaatcgcg gcagggtatg ctagcttcca accggacgcc tgcctgatca atcgctacgc
     3841 gcctggcgca aaactgtcgc tgcatcagga taaagacgag ccggatctgc gcgcgcctat
     3901 cgtctcagtt tcgttggggg tgccggcggt ttttcagttt ggcggcctgc gtcgcagcga
     3961 tccgctccag cggatcttac tggagcatgg cgatatcgtg gtctggggcg gcgagtcccg
     4021 cctgttttat cacggtatcc agccgcttaa agcgggcttt catcccatga ccggtgaatt
     4081 tcgttacaat ctcaccttcc gtcaggcggc tgaaaaagaa taaaaataag aattattatt
     4141 gctgtgcagg tagagttagt taaactgcgg gctgttatta tcggtccggg ttgtatgcat
     4201 ggaacttctt attcttgtct ggcggcagta ccgctggcca tttattagcg tgatggcgct
     4261 gagcctcgcc agcgcggcgc tggggattgg cctgatcgcg tttatcaatc agcgcctgat
     4321 tgaaacggtg gacaccaccg tcatggtgct gccggaattt ctcggtctgc tcctgttgct
     4381 aatggttgtc acattaggtt cccaactggc gctcaccgct ctgggacacc atttcgttta
     4441 ccgcctgcgc agcgaattta tcaagcgcat tctggatacg cacgttgaac gcattgagca
     4501 actgggcagc gcctctttac tggccggtct gaccagcgat attcgcaata ttactatcgc
     4561 ctttgtgcgt ctgcctgagc tggtgcaggg cattgtcctc accgtcggct cggcggcgta
     4621 tctggcgatg ctatcgacaa aaatgctgct ggttacggct atctggatgg cggtcactat
     4681 ctggggcgga ttcgtgctgg tggcgcgggt ttaccagcat atggcgaccc tgcgcgagac
     4741 cgaagataag ctgtacaacg actatcagac ggtgctggag ggacgcaaag agctgacgct
     4801 aaaccgcgag cgtgcggagc agatttttca gcaatgctat accccggacg ccaaagagta
     4861 ccgtcatcac attatccgtg ccgatacttt tcacctgagc gccgtcaact ggtcgaatat
     4921 catgatgctg ggggcgatag gcctggtctt ctggatggcg aatagtctcg gctgggcgga
     4981 taccaacgtc gcggcgacct attcactgac gttgctgttc ctgcgcacgc cgctgctgtc
     5041 tgcggtgggg gcgttgccaa cgctactgac cgcccaggtg gcgtttaata aactgaataa
     5101 attcgcgctc gccccgtata agcctgattt tccacagccg aaagcctttc ccgactggaa
     5161 gacgctggag ctgcgcaacg tggtttttca ctatcaggat aacgcgtttt ccgtggggcc
     5221 catcaacctg acgattcacc gcggcgaact gctgttttta attggcggca acggtagcgg
     5281 gaaatcgacg ctggccatgt tattgaccgg tttataccag ccgcaatcgg gaacgatttt
     5341 acttgacggt caacctgttg ccgccgggca gccggaagat tatcgcaaac tgttttctgc
     5401 ggtgttcacc gatgtgtggt tattcgaccg cctgctgggg ccgcagggga aacccgccaa
     5461 tcccgcgctg gtcgaaaagt ggcttgagca cctgaaaatg acgcacaagc tggagctaaa
     5521 cgatgggtgc atcttgaatc ttaaactgtc gaaagggcaa aaaaagcgca ttgcgctgct
     5581 gctggcgctg gcggaagagc gcgatattat tttgctggat gagtgggccg ccgatcagga
     5641 cccgcatttc cgccgggaat tttatcaggt actgttgccg ttaatgcagg aaatgggcaa
     5701 aaccattttc gccatcagcc atgatgatca ctattttatt cacgccgatc gcctgcttga
     5761 aatgcgtaac gggcagttaa ccgaactcac cggcgacgaa cgtgacgccg cttcgcgtga
     5821 tgcggttgcg cgtactgcgt aatggactat ggcgccggat aaactgcctg atggcagccc
     5881 tacgtccgca cgcgggtagg cctgataaga tgccacgcgt cgccaccagg catcggggta
     5941 ttttttgcgg cgggcgagcg ggtttccaga cgtgttttaa aaagaacccc ggagcgctgc
     6001 gtgagtcggc gtgttcagat gcccggtaag tgtgaccggg cagcgtaaca ttatcgcgcg
     6061 atggcattct gtacgttagc gtccgctttc cagatgcggt atttcacgtc cacattcgcc
     6121 ggggtataca ccacgatcgg cagcttgctg ttgtagcgca gcatcccgtc ttcacccagc
     6181 caggcggtga cgaatttttg ctctttctta ccttcagggc aggccatcat ggttgatacc
     6241 ggagaggtga cgttatcaaa gacataatag tcgtagcccc agccttccag cgtttttgtt
     6301 tccagcgtgc cgccgaggcg atgctggtta caatccacat tcagcgtttg accaatcaac
     6361 agttccactt tgagggtaga ttcatcctgc tgaggggtaa gggttatcac ttgccgcttc
     6421 attcctttct ccgcctgcgg atagggggcg attttttcca gcggctgggc ggtatcgcca
     6481 ttgttagccc aggcagaggc gctggcgagg gcggcgaaga cgacggcagg gacaaacatc
     6541 ttcatttgat tgttcacagt atttcctttc tgctgttttc ggt
//
LOCUS       DAJVSD010000244         6494 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.244, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000244 DAJVSD010000000
VERSION     DAJVSD010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6494
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.244"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(73..1791)
                     /gene="proS"
                     /locus_tag="OQP62_003818"
     CDS             complement(73..1791)
                     /gene="proS"
                     /locus_tag="OQP62_003818"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HCS1723242.1"
                     /translation="MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLP
                     TGLRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGER
                     PFVLGPTHEEVITDLVRNELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDA
                     YSFHTSQESLQETYDAMYAAYSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGE
                     DDIVFSDVSDYAANIELAEAIAPQTPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEK
                     TVKTLLVKAVKDSKSPLVALLVRGDHELNEVKAEKLPHVASPLTFATEEEIRAVINAG
                     PGSLGPVNMPIPVIIDRTVAAMSDFAAGANIDGKHYFGINWDRDVATPVVADIRNVVA
                     GDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCYGIGVTR
                     VVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQGIEVL
                     MDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIVDYL
                     VKAIKG"
     gene            complement(1902..2609)
                     /gene="tsaA"
                     /locus_tag="OQP62_003819"
     CDS             complement(1902..2609)
                     /gene="tsaA"
                     /locus_tag="OQP62_003819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HCS1723243.1"
                     /translation="MSSFQFDQIGVIRSPYKEKFAVPRQPGLVKSACGELHLIAPYNQ
                     ADAVRGLEAFSHLWVLFVFHQTMDGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGM
                     SLVALKGIECRKESVILKLGSLDLVDGTPVVDIKPYLPFAEALPDAAASYAQQAPIAE
                     MPVSFTAEVAQQLTTLERRYPQLRTFICDVLAQDPRPAYRKGEETGKTYAVWLHDFNV
                     RWRVVNTGFEVFALEPR"
     gene            complement(2606..3010)
                     /gene="rcsF"
                     /locus_tag="OQP62_003820"
     CDS             complement(2606..3010)
                     /gene="rcsF"
                     /locus_tag="OQP62_003820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rcs stress response system protein RcsF"
                     /protein_id="HCS1723244.1"
                     /translation="MRALPICLLALMLGGCSMLSRSPVEPVQSTATPPKAEPEKPKAP
                     RAAPVRIYTNAEDLVGKPFRDLGEVSGESCQATNQDSPPNIPTARKRMQINASKMKAN
                     AVLLHSCEITSGTPGCYRQAVCIGSALNISAK"
     gene            complement(3129..3944)
                     /gene="metQ"
                     /locus_tag="OQP62_003821"
     CDS             complement(3129..3944)
                     /gene="metQ"
                     /locus_tag="OQP62_003821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     lipoprotein MetQ"
                     /protein_id="HCS1723245.1"
                     /translation="MAFKFKTFAAVGALIGSLALAGCGQDEKDPNHIKVGVIVGAEQQ
                     VAEVAQKVAKEKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYK
                     LVSVGKTFVYPIAGYSKKIKSLDELKDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDG
                     VSLLPTSLDIVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGI
                     FVEDKDSPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW"
     gene            complement(3983..4636)
                     /gene="metI"
                     /locus_tag="OQP62_003822"
     CDS             complement(3983..4636)
                     /gene="metI"
                     /locus_tag="OQP62_003822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease MetI"
                     /protein_id="HCS1723246.1"
                     /translation="MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPG
                     QIMENARLYRSLSAVVNIFRSIPFIILLVWMIPFTRIIVGTSIGLQAAIVPLTVGAAP
                     FIARIVENALLEIPAGLIEASRAMGATPLQIVRKILLPEALPGLVNAATITLITLVGY
                     SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVVLVYLIQLSGDRIVRAVTHK"
     gene            complement(4629..5660)
                     /gene="metN"
                     /locus_tag="OQP62_003823"
     CDS             complement(4629..5660)
                     /gene="metN"
                     /locus_tag="OQP62_003823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014168731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein
                     MetN"
                     /protein_id="HCS1723247.1"
                     /translation="MIKLSNITKVFQQGARTIQALNNVSLHVPAGQIYGVIGASGAGK
                     STLIRCVNLLERPTEGSVMVGGQELTTLSESGLTKARRQIGMIFQHFNLLSSRTVFGN
                     VALPLELDNTPKEEIKRRVTELLDLVGLGDKHDSYPANLSGGQKQRVAIARALASNPK
                     VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE
                     LIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQARLKASPETDSVPMLRMEFTGQ
                     SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQEETQAAIAWLQDHH
                     VKVEVLGYV"
     gene            5850..6416
                     /gene="gmhB"
                     /locus_tag="OQP62_003824"
     CDS             5850..6416
                     /gene="gmhB"
                     /locus_tag="OQP62_003824"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HCS1723248.1"
                     /translation="MAKSVPAIFLDRDGTINVDHGYVHEIDAFEFIDGVIDAMRELKK
                     MGYALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSIEE
                     FRQVCDCRKPHPGMLISARDFLHIDMAASYMVGDKLEDMQAAAAANVGTKVLVRTGKP
                     VTAEAENAADWVLNSLADLPSAIKKQQK"
BASE COUNT         1582 a         1705 c         1680 g         1527 t
ORIGIN      
        1 aaaaggcctc gcagggtgcg aggcctttac atatctgccg gatggcgccg ggcaatccca
       61 acaaaatgtc gtttagcctt taatcgcctt gaccagataa tcaacgatat cgccggtttt
      121 aatcagcgat ttttcaccgc tacgacggta tttatactca atatcgtcgt tatccaggtt
      181 gcgatcgcca atcacgatag tatgtggaat accaatcagc tccatatcgg caaacatcac
      241 gcccgggcgc tctttacgat cgtccatcag cacttcaatg ccctgcgcgc gcaattcgct
      301 gtacagcttt tccgccagct cctgcacacg gaaggatttg tgcatattca tcggcagaat
      361 agcgacctgg aaaggtgcaa tggcgtcagg ccatacaatg ccgcgctcgt caaagttctg
      421 ctcgatagcc gcggcaacga cacgtgttac gccgatacca tagcagccca ttgtcaggat
      481 ctggttacgg ccatcttcac cctgaacgga ggctttcagc gcttctgagt acttggtacc
      541 taactggaag atgtgaccca cttcgatacc gcgtttgata agcaacgttc cctgaccatc
      601 cggactcgga tcgccggcga ctacgttacg gatgtcggca acaacaggcg tcgccacatc
      661 gcgatcccag ttaataccaa agtagtgttt accgtcgatg ttagcgccag cggcaaaatc
      721 gctcatggcg gcaacggtac gatcgatgat gaccggaatc ggcatattga ccgggccgag
      781 ggagccaggg ccggcattaa ttacggcgcg aatctcttct tcagtagcga aggtcagcgg
      841 gctggcaacg tgcggcagtt tttccgcttt aacttcattc agttcatgat cgccgcgaac
      901 cagcagagcc accagcggag acttgctgtc tttcaccgct ttcaccagca gcgtttttac
      961 cgttttttca attggcaggt tgaattgttc caccagctcc gcgatggttt tggcatttgg
     1021 cgtatcgacc agagtcattt cctgcgtcgc cgctgcgcgc ggtgtttgcg gcgcgatagc
     1081 ttctgccagt tcaatgttag ccgcgtaatc agaaacatca gagaaaacga tatcgtcttc
     1141 gccgctttgc gccagcacct ggaattcatg cgaggcgttg ccgccgatag aaccggtatc
     1201 ggcctgtacc gcgcggaaat ccagccccat acggctgaag atacggctat acgcggcgta
     1261 catggcgtca taggtttcct gcaacgactc ctgagaggtg tggaaagagt aagcatcttt
     1321 catcaggaat tcgcgcgaac gcatcacgcc aaagcgcgga cgcacttcat cacggaattt
     1381 ggtctggatt tggaagaagt tcagcggcaa ctgcttataa gagctgagtt cattacgcac
     1441 caggtcggtg ataacttctt cgtgggtcgg gccgagtacg aacggacgct cgccacggtc
     1501 gacaaaacgc agcagttccg gaccgtactg ttcccaacga ccactctctt gccacaggtc
     1561 ggctggctga acgactggca tcgacacctc gatagcaccg gcgttgttca tctcttcacg
     1621 cacgatgttt tcgacttttt tcaggacgcg caggccggtc ggcagccagg tatataaccc
     1681 ggaggcgagc ttgcggatca tcccggcgcg cagcatcagc tggtggctga taacctcggc
     1741 gtcggcaggt gtctccttca gagtggagag caggtattgg ctagtacgca tgttgttacg
     1801 gttccagttg aacgatcgaa caggctcaat gtgagcctga tacaaaaaaa gtgatttagt
     1861 ttaccagcgt gcaagagatg tcaaaagaga agggcgtgaa attaccgtgg ttccagcgca
     1921 aacacttcaa atccggtgtt aaccacacgc cagcgcacgt taaaatcatg cagccagacg
     1981 gcataggttt tgcccgtctc ttcaccctta cgataagccg ggcgaggatc ttgcgccagc
     2041 acatcgcaaa taaatgtccg tagctgcgga taacgccttt ccagcgtcgt aagctgttga
     2101 gccacttcag cggtaaaact cacaggcatt tcagctatcg gcgcctgttg cgcatagctg
     2161 gcggcggcgt ccggtaaggc ctcggcaaac ggtaaatacg gtttgatatc caccaccggc
     2221 gtgccatcca ccagatccag actgcctaat ttcagaatta cgctctcttt ccggcactcg
     2281 atacctttta gcgcaacgag cgacatgcca atcggattgg ggcggaacgt ggagcgcgtg
     2341 gcaaaaacgc ccattctggc gttaccgcca agacggggcg gacgaactgt tggccgccag
     2401 ccgccgtcca tcgtctgatg aaaaacgaaa agcacccaca aatggctgaa cgcttccagg
     2461 ccgcgaacgg catcggcctg gttgtaaggc gctatcagat gcagttcgcc gcaggcgctt
     2521 ttgaccagac caggctggcg cggaacggcg aatttttctt tataggggga gcgaataacg
     2581 ccgatttgat caaactgaaa gctgctcatt tcgccgaaat attcagggcg gacccgatac
     2641 aaaccgcctg acggtagcag cctggcgtgc cgctggtaat ttcacagctg tgcagcagga
     2701 cggcgttggc tttcatttta gatgcattaa tctgcatacg cttgcgcgca gttggaatgt
     2761 taggcggaga gtcttgattt gtcgcctggc aggattcgcc gctaacctcg ccaagatcgc
     2821 ggaaaggttt gccgactaag tcttcagcat tggtgtaaat cctgacggga gcggcacgcg
     2881 gcgctttagg tttctccggc tccgcttttg gcggggttgc ggtgctttga acaggttcaa
     2941 caggggatct gcttagcatg gaacaaccgc ccagcatgag tgccaataaa cagatcggta
     3001 aagcacgcat aatatttcct caatgaatgt tctaattgcc agatattgaa tcaggagctt
     3061 gcataaatga caagacgggc aatagcccgt cctgaataat attacagatt gtggaatcag
     3121 cctaaaactt accagccttt caccgcgccg ccattaaaaa ctttatttgc ggcttcgtac
     3181 acttcatcag actggtaagc ctgaacgaat tttttcacat tctcggcgtc tttgttatct
     3241 tcacgcgtca cgatcaagtt aacgtacgga gaatctttat cttcaacgaa gataccgtct
     3301 ttcgctggcg tcaggccaat ctggctggcg taagtcgtat tgatgaccgc taacgcgatc
     3361 tgagcgtcat ccagcgaacg cggcaactgc ggcgcttcca gctcaacaat tttcagattt
     3421 ttcgggtttt cgacgatatc cagcgaggta ggaagcagac tgacgccgtc tttcagttta
     3481 atcagcccta ctttttgcag cagcagcagg gaacgaccaa ggttggtcgg gtcgttaggc
     3541 acagcgacct gggaaccgtc cttgagctca tccagagatt tgattttttt ggaatatcct
     3601 gcaatgggat agacaaaagt cttaccaacg gaaaccagtt tgtagccgcg atctttgatt
     3661 tgctgatcca gatacggttt gtgctggaag gcattggcat cgatatcgcc tttgctcagc
     3721 gcttcattag gcagaacata atcattaaag gtcaccaatt ccacgtccag gccgtatttt
     3781 tctttcgcga ctttctgcgc gacttcggca acttgctgct ctgcgccaac gattacgccg
     3841 actttaatat gattcggatc tttttcatcc tgaccgcaac ccgcaagtgc cagagaacca
     3901 atcagagcac ccactgccgc aaaggttttg aatttgaacg ccatgcttat ttccttaatg
     3961 agtatttgtg ttgtgtttaa cgttacttat gcgtgacagc cctgacgatg cgatcgccgg
     4021 ataactgaat taaataaacc agaacgacaa gtaataccag caccgtattc atcacggtag
     4081 cattgtatcc aatataaccg tactgatagc cgatttgacc gaggccgcct gcgccgacgg
     4141 cgccgcccat tgcggagtaa ccgaccaggg tgattagtgt aatggttgcc gcattcacca
     4201 gaccaggcag cgcttccggt aaaaggattt tacgtacaat ttgcagcggc gtggcgccca
     4261 tcgctcgcga ggcttcaatc agcccggcag ggatctctaa caacgcattt tccactatac
     4321 gggcgataaa aggcgcggcg ccgacggtca gcggtacaat cgcggcctgc aaaccaatgg
     4381 aggtgccgac aattattcgg gtaaaaggaa tcatccacac caacaggatg ataaagggaa
     4441 tcgagcggaa aatattgacc accgcagaga gggagcgata cagcctggcg ttctccataa
     4501 tctgccccgg gcgcgtaaca tacagcaata cgccaaccgg caggccaatc acgaaaccga
     4561 agaaaccgga gacaaaggtc atcgccagcg tttcccagac gccacgaacc agtaaccaca
     4621 tcattgcctc agacataacc cagtacctct actttcacat ggtgatcctg cagccaggca
     4681 attgcggctt gcgtctcttc ttgtgtgccg tgcatttccg ttagcataat gccgaacttc
     4741 acaccgcccg cgtaatccat ctgtgcgctg ataatattat tgttcacgtt gaaacgacgc
     4801 gcggtttcag aaagcagcgg ggcatccaca gactgtccgg tgaactccat gcgcagcatc
     4861 ggcacgctgt cagtttccgg cgacgctttc aaacgcgcct ggtaatcttc cggaatgtcc
     4921 agatgcagag tggactgaat aaacttctgc gccagcggcg ttttaggatg cgagaagact
     4981 tcgctgaccg tatcctgctc aataagctcg ccattactga tgacggcaac gcagtcgcag
     5041 atacgtttta cgacatccat ttcatgagtg ataagcagaa tcgtcaaccc cagacgacgg
     5101 ttgatatctt tcagcaattc cagaatcgaa cgggtcgtcg cgggatcaag cgcgctggtg
     5161 gcttcatcgc acagcaacac ttttggatta ctggctaacg cgcgggcaat cgcgacacgc
     5221 tgtttctgac cgccggaaag atttgccgga tagctgtcgt gcttgtcgcc aagaccgact
     5281 aaatccagca gctctgtgac acggcgtttg atctcttcct ttggtgtgtt atccagttcc
     5341 agcggcaacg cgacgttgcc aaacacggta cgggaagaga gcaggttaaa atgttggaaa
     5401 atcatgccga tttgacggcg agctttggtc aacccggact ctgaaagcgt tgtcagctcc
     5461 tgaccgccta ccattacgct tccttcagta ggacgttcaa gtaagtttac gcagcgaatg
     5521 agcgtacttt taccggcgcc ggaggcgccg atgacgccgt aaatttgtcc ggcagggaca
     5581 tgcaggctga cattgttcag cgcctgaatg gtgcgcgccc cctgctggaa cactttggta
     5641 atattcgaaa gtttaatcat tgattcttta ttatcgtaat gaaatgagcg gaggcatttt
     5701 cgtctgccta atacggtcaa cgccgtcaac agaatggatg ttaaggcatc cagacgtcta
     5761 aatcaatcag gctttatacg atgagcactt tcttgcctgc tgaaacatgc gatactagcg
     5821 ccacttgctt tactcaggag ctataaaagg tggcaaagtc tgtacccgca atttttctcg
     5881 accgtgacgg caccattaat gtggatcacg gctacgtaca tgaaatcgat gcatttgagt
     5941 ttatagacgg cgttattgac gcgatgcgcg agctaaaaaa aatgggctat gcgctggtgg
     6001 tggtgacgaa ccagtccgga atcgcgcgcg gcaaattcac tgaggcgcag tttgaaacgt
     6061 taaccgaatg gatggactgg tcgttggcgg atcgcgatgt tgatttggac ggcatctatt
     6121 attgtcctca ccatccgcag ggcagcatag aagagttccg tcaggtatgt gattgccgca
     6181 agccgcatcc aggaatgctt atctcggcgc gtgatttcct gcatatcgat atggcggctt
     6241 cttatatggt gggagacaag ctggaagata tgcaggcggc agcggcggca aatgtcggga
     6301 caaaagtgct ggtgcgtacg ggcaaaccgg tcacggcaga agcagaaaac gcggcggact
     6361 gggtgttaaa cagccttgct gacctgccat cagcgataaa aaagcagcaa aaataagcgt
     6421 tatggataaa agatgagcgg ttaaaacaaa aatgcatttt tccgcttgtc ttcctgaacc
     6481 gactccctat aatg
//
LOCUS       DAJVSD010000245         6484 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.245, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000245 DAJVSD010000000
VERSION     DAJVSD010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6484)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6484)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6484
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.245"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            101..1468
                     /gene="mltD"
                     /locus_tag="OQP62_003825"
     CDS             101..1468
                     /gene="mltD"
                     /locus_tag="OQP62_003825"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase D"
                     /protein_id="HCS1723249.1"
                     /translation="MKAKAILLASVLLVGCQTSQNTGNVQQHAQSLSAAGQGEAGKFT
                     SQARWMDDGTSIAPDQDLWAFIGDELKMGIPENSRIREQKQKYLRNKSYLHDVTLRAE
                     PYMYWIAGQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQT
                     RNYDARRDVVASTTAALDMMQRLNKMFDGDWLLTVAAYNSGEGRVMRAIKANKARGKP
                     TDFWSLSLPRETKLYVPKMLALSEILKNSKRYGVRLPTTDESRALARVRLNSPVEMAQ
                     VADMAGMSISKLKTFNAGVKGSTLGVSGPQYVMVPKKHAEQLRESLASGEIDAVQSQL
                     IADNTPLNSRSYKVRSGDTLSGIASRLGVSTKDLQQWNNLRGSRLKIGQSLTVGAGSS
                     AQRLANNSDSITYRVRKGDSLSSIARRHGVNIKDVMRWNHDTDNLQPGDQLTLFVKDN
                     STPDS"
     gene            complement(1524..2294)
                     /locus_tag="OQP62_003826"
     CDS             complement(1524..2294)
                     /locus_tag="OQP62_003826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HCS1723250.1"
                     /translation="MTTHSHHDNVEKQFGSQANAYLHSAVHAAGRDLARLAQRLSDFS
                     HASVLDMGCGAGHASFVAAQHVNSVVAYDLSASMLEVVAGAAEERHLSNITLRQGYAE
                     KLPFEDASFEVVISRYSAHHWHDVGQALREVYRVLKPGGVLIIMDVMSPGHPVRDIWL
                     QTVEALRDTSHVRNYSSGEWLAMVNNAMLVTNTVITDRLSLEFRSWVTRMRTPAPLVE
                     AIRLYQASAPVEVKRYFELQDDGSFSSDTIMLEAHKAV"
     gene            complement(2372..3172)
                     /locus_tag="OQP62_003827"
     CDS             complement(2372..3172)
                     /locus_tag="OQP62_003827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HCS1723251.1"
                     /translation="MRKNTYAMRYVAGQPAERILPLGSFASIGQALPAGEPLSSEERI
                     RILVWNIFKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFV
                     LPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNVHAVNF
                     SLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLRQVRFTD
                     DQRRRAFGRPLDFVFYRGLNVNEASVLVTRASDHNPLLVEFSPGKPEQ"
     gene            complement(3304..4479)
                     /locus_tag="OQP62_003828"
     CDS             complement(3304..4479)
                     /locus_tag="OQP62_003828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1723252.1"
                     /translation="MPLALFALTISAFAIGTTEFVIVGLVPTIAQQLAVSLPSAGMLV
                     LIYALGVAIGAPVLTALTGRLPRKQLLVALMVLFTAGNLLAWQAPGYMTLIAARLLTG
                     LAHGVFFSIGSTIATSLVPKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETF
                     LAVSLLGVIALMSSQLLIPANIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFT
                     AFTFLAPMMQDLAGFSPAAVSWILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAAL
                     FVLLMVFQVTASTQYAALATILVMGIFAFGNVPGLQVYVVQKAEQFTPNAVDVASGLN
                     IAAFNIGIALGSVIGGQTVAHYGLAQTPWIGALIVLVAFLLMGVSGRLDKPVRIALE"
     gene            4584..5498
                     /locus_tag="OQP62_003829"
     CDS             4584..5498
                     /locus_tag="OQP62_003829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1723253.1"
                     /translation="MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMK
                     LGVSLLNRTTRQLSLTEEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATP
                     VMLHFLMPLIKPFRERYPEITLSLVSSETFINLIERKVDVAIRAGTLTDSSLRARPLF
                     TSYRKVIASPDYIARFGKPESVEELKQHLCLGFSEPISLNTWPIACSDGQLHEIECGI
                     SSNSGETLKQLCLNGNGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDR
                     AVSTRIRAFIDFLSEYIRTAPAGAVKEG"
     gene            complement(5519..6322)
                     /gene="dkgB"
                     /locus_tag="OQP62_003830"
     CDS             complement(5519..6322)
                     /gene="dkgB"
                     /locus_tag="OQP62_003830"
                     /EC_number="1.1.1.346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-didehydrogluconate reductase DkgB"
                     /protein_id="HCS1723254.1"
                     /translation="MTIPAFGLGTFRLKDDVVIASVKTALELGYRAVDTAQIYDNEAA
                     VGQAIAESGVPRNELYITTKIWIENLSKDKLIPSLKESLKKLRTDYVDLTLIHWPSPG
                     DAVSVEEFMQALLEAKKQGLTREIGISNFTIPLMEKAIAAVGADHIATNQIELSPYLQ
                     NRKVVDWAKAHGIHITSYMTLAYGKALKDEVIARIAVKHNATPVQVILAWAMGEGYSV
                     IPSSTRRENLASNLLAQDLHLDAEDKNAIAALDCNDRLVSPEGLAPAWD"
BASE COUNT         1705 a         1711 c         1637 g         1431 t
ORIGIN      
        1 ggttaaggtc aaagaaagac acgttctgat aattcttact tgtcattcgc taacttcgcc
       61 gttatgatcg gtcgtctttt aagcaactat tgacacacac atgaaggcaa aagcgatatt
      121 actcgcctct gtcctgcttg tggggtgcca gacatctcag aacactggca acgtccaaca
      181 gcacgcacag agcctttctg cagctggtca aggggaagca ggaaagttta cgagtcaggc
      241 acgatggatg gacgacggaa cgtctatcgc gccagatcag gacttgtggg ctttcattgg
      301 cgacgagcta aagatgggaa ttccggaaaa cagccggatt cgcgaacaga aacagaagta
      361 tttacgcaat aagagctatc tccacgatgt aactttacgg gcagagccgt atatgtactg
      421 gatagcgggg caggttaaga aacgtaacat gcctatggag ctggtactac tacccatagt
      481 ggagagcgct tttgatcctc acgcaacgtc tggcgccaat gccgcaggca tctggcagat
      541 cataccgagc acagggcgca attatggttt aaagcagacc cgtaattatg acgcgcgtcg
      601 cgatgttgta gcctctacga ccgccgcgtt agacatgatg cagcgtctga acaaaatgtt
      661 tgacggcgac tggctgttaa ctgttgcagc gtataacagc ggcgaaggcc gtgttatgcg
      721 ggcaattaaa gcaaacaaag cgcgtggaaa accgacggat ttctggtcgc tttctttgcc
      781 cagagaaacg aaactctacg tacctaagat gctggcattg agtgaaattc tcaaaaacag
      841 caaacgctac ggcgtacgtc tgccaacaac agatgaaagc cgagcgctgg cacgagttcg
      901 tttaaacagt ccagttgaaa tggcccaggt tgcggatatg gcgggcatgt ctatcagcaa
      961 gctgaagacg tttaatgccg gtgtaaaagg gtctacctta ggcgtaagcg gtccgcaata
     1021 tgttatggtg cccaaaaagc atgccgagca gttgcgtgag tcgctggctt ccggtgagat
     1081 tgacgccgtt cagtcccaac tgatcgccga caatacgccg ttgaatagcc gtagctataa
     1141 ggtgcgctct ggcgatacgc tttccggtat tgcttcgcgg cttggcgtaa gcacgaagga
     1201 cttgcagcag tggaacaacc tgcgtggttc ccgcctgaaa atcgggcaaa gcctgaccgt
     1261 gggcgctggc agcagcgcgc aacgactggc aaacaatagc gatagcatta cctatcgtgt
     1321 ccgtaaaggc gattcgcttt ccagtatcgc cagacgtcac ggggtgaata tcaaagatgt
     1381 gatgcgctgg aaccatgata cggataatct acaaccgggc gatcagctta cgttgtttgt
     1441 gaaggacaat agcacgccag actcctgata ttgtccgacg aaaaagccaa aaggcgccgc
     1501 ttcccccggc gccttttaaa ttgttatacc gctttatgcg cttccagcat gatagtatcg
     1561 ctgctaaacg agccgtcatc ctgcaactca aaataacgct tcacctctac cggggcgctc
     1621 gcctgatata atcgaatcgc ctcaaccaac ggcgctggcg tacgcatccg cgttacccat
     1681 gagcgaaact ccagcgataa acgatcggtt atcacggtat tcgttaccag catcgcgtta
     1741 ttgaccatcg ccagccattc accactggaa tagttacgga catgcgacgt gtcgcgtaac
     1801 gcctccaccg tttgcagcca gatatcgcgt acaggatgtc caggcgacat gacatccatg
     1861 ataatcagca cgccgccggg ttttaataca cgataaacct cacgcaatgc ctgaccaacg
     1921 tcgtgccagt gatgcgcgga atagcggcta atcaccacct caaacgatgc atcttcaaag
     1981 ggcagttttt cggcatagcc ttgccggaga gtaatattac ttaaatgtct ttcttccgcc
     2041 gctccagcga caacctcaag catgctggcg gataaatcgt atgccacgac cgaattgaca
     2101 tgttgcgcag cgacaaaact cgcgtgtcca gccccacatc ccatatccag tacgctcgcg
     2161 tgggaaaaat cagacaacct ttgcgccagc cgcgctaagt cacgacccgc tgcgtgaacg
     2221 gcgctatgta aataggcgtt cgcctgtgaa ccaaactgct tttcaacatt gtcatggtgg
     2281 gaatgcgttg tcatggtagt gcccttctgt tatgagaaaa atagagggca gcacccgcag
     2341 aggcctgccc cacggcagac ctgactcacc tttattgctc aggtttgccg ggactgaatt
     2401 caacgagtag cggattgtga tcggaagcgc gcgtcaccag tacggaggct tcattcacgt
     2461 ttaaaccacg ataaaaaaca aaatccagcg gtcgtccaaa cgcacgacgg cgttgatcgt
     2521 cagtgaaacg cacctggcgc agcgacatct cacgtgcaaa gcggtacaac gcattcatac
     2581 gtgggcggct ccaggcatta aaatcacccg ccataatgac agggccgcta tggtgcgcaa
     2641 tctggtcgcc gatcggaagt aactgcttac tgtatacgtc cacgcccaga ctaaaattta
     2701 ccgcatgaac atttactacc attaataaac gggtatccgg caagggatat accgtcacca
     2761 gggctgattt cgccaaacgt aaaattggtt ctctttcccg taaagggcag cagtaaacag
     2821 gatgggcggc agaaagcgtc ataacgccag acgggtgctg aggtaataca aaagcgggaa
     2881 cctgatcggc ggcaagatag ttagcggtgg caaactgtac cagttcaggc gtcgtctggg
     2941 cctcctgcaa caggaccaga tgcgcatctt tgccgtagtt cttcagcacc gataaccatt
     3001 cggctcgctg ctgcttgaat atattccaca cgaggatacg gatccgctct tcactgctta
     3061 gcggttcccc ggcgggcaat gcctggccaa tgctcgcaaa cgaccctagc ggcaaaatcc
     3121 gctcggcggg ctgtccggca acatagcgca tcgcataggt gttttttcgc acttttgact
     3181 ttcaaacctc tgtaacgtca accagtcctc aaccggactg gttcttctgt tatagggatt
     3241 ttagcactca ctttcaacga acaattgcag tttgttttgt aagtaggcgc ttacatcaat
     3301 aatttactcc agagcaatgc gcacaggttt atcaagacgt ccgctgacgc ccatcagcag
     3361 aaaagccacc agaacaatga gggcgccaat ccacggcgtc tgcgccaaac cgtaatgcgc
     3421 caccgtttgt ccgccaatca cggaacccag cgcaatacca atgttaaacg ccgcaatgtt
     3481 cagacctgac gccacatcaa cggcattagg cgtgaattgt tccgctttct gtaccacgta
     3541 gacctgcaac cccggtacgt taccgaaggc aaagatcccc atcaccagaa tggtagccag
     3601 cgcggcatac tgcgtggagg ccgtcacctg gaagaccatc agcagaacaa acagcgcggc
     3661 gaaaatgaat ttcagagccg gcacggcacc atgcttatcc gccagtttac cgccccagat
     3721 attgccgata gccactgata cgccataacc cagtaggatc cagcttactg ctgccggaga
     3781 gaatcccgcc agatcctgca tcatcggcgc caggaaggtg aatgccgtga ataccccgcc
     3841 gtagcccagc gccgtaacgg cgtaaatcag cagcagacga ggatgagtca gtactttcac
     3901 ctggtcacga atgctggcgg ccgcccgacc aggaatattg gcagggatca gcagttgact
     3961 gctcatcagc gcaatcacgc ctaacagtga taccgcaagg aaggtctcac gccagccaaa
     4021 atgctgaccg ataaatgtcc ccagcggaac acctgttacc agcgctactg ttaaaccacc
     4081 aaacataata gcgatagcag aagccgcttt ctctttcggc accagacttg tcgcgatggt
     4141 agagccaatc gagaagaaca cgccgtgcgc caggcccgtc agcagacggg cggcgattaa
     4201 tgtcatatag cccggagcct gccacgccag caaattcccc gccgtaaaca agaccatcag
     4261 cgcgaccagt aactgtttac gcggcaggcg tccggtcaga gcggttagca ccggcgcgcc
     4321 aatagccaca cccagtgcat agattaaaac cagcattccg gcagaaggta acgagacagc
     4381 cagttgttgt gcaatggtcg gcaccaggcc gacaatcacg aactcagtcg tgccaatagc
     4441 gaaggcactt attgtcagtg caaataaagc gagaggcata cataactcca taacagcagt
     4501 aatcagatga cacgcagtat gccaggatgt tttaatgaca aaaatagcca aaatataaat
     4561 ttaattttgc tgcaggagca gaaatgaaag ccacctccga agaacttgca atttttgtcg
     4621 ctgtcgtgga aagcggcagc ttcagccggg cggcagagca gctcggacag gccaattccg
     4681 ctgtcagtcg ggcagttaaa aagctggaga tgaagctcgg cgtcagtctg cttaatcgaa
     4741 cgacccgaca gttgagcctg actgaagaag gagagcgata cttcaggcgt gtgcagcaga
     4801 tactgcaaga aatggctgcc gcagaaacgg aaatcatgga gtcgcgtaat accccacgcg
     4861 gcttactgcg tatcgatgcg gcaacgccgg taatgctgca tttcctgatg ccgctgatta
     4921 aaccttttcg tgaacggtat ccggaaataa ccttgtctct tgtctcctca gaaacgttca
     4981 tcaatcttat tgaacgaaaa gtggatgttg cgatacgcgc aggcacgttg acagattcaa
     5041 gtctgcgcgc acgtccgtta tttaccagct atcgtaaggt tatcgcctca ccggattata
     5101 ttgcccgttt tggcaagcct gagagcgttg aagagttaaa acagcatctg tgcctggggt
     5161 tttctgaacc tatctcgctc aatacctggc cgatagcctg tagtgacgga cagctccatg
     5221 agatcgaatg tgggatttcg tccaacagcg gggaaacgtt aaaacaactt tgcctgaacg
     5281 gtaacggcat tgcatgtctt tcagattata tgattgataa agagatcgcg cggggagaac
     5341 tggtggaact gctggccgat aaacgtctgc cggtagaaat gcctttcagc gccgtttact
     5401 acagcgatcg cgccgtcagc acacgtattc gggcatttat cgactttttg agcgaatata
     5461 taagaacagc ccccgcagga gctgtgaaag aggggtaaag gtacaaagga tcgggtaatt
     5521 aatcccaggc aggagccagt ccttccgggc taaccagacg atcgttgcag tccagcgccg
     5581 cgatcgcatt tttatcttcg gcatccagat gcagatcctg cgccagcagg ttgcttgcca
     5641 ggttttcacg cctggtggat gaagggatca ccgagtaacc ttcgcccatt gcccatgcca
     5701 gaataacctg caccggggtc gcattatgtt taaccgcaat gcgcgcaatc acttcatctt
     5761 tcagcgcttt accgtatgcc agcgtcatgt aagaggtgat atggataccg tgcgctttcg
     5821 cccagtcaac caccttacga ttctgcagat acggagatag ctcaatctgg ttggtggcga
     5881 tatggtctgc gcccaccgcg gcaatagcct tttccatcaa cggaatagtg aagtttgaga
     5941 tgccaatttc gcgagtcagc ccttgttttt tagcttccag caatgcctgc ataaattctt
     6001 cgacagacac ggcatcaccc ggagatggcc agtggatcag cgtcagatcg acataatcgg
     6061 tacgcagttt tttcaggctc tctttcaggc ttgggattag cttgtctttg ctaaggtttt
     6121 caatccagat cttggtggtg atgtacagct cattacgcgg tacgccgctc tcagcaatcg
     6181 cctgtccaac agccgcttca ttatcataga tttgcgcagt gtcgacagca cggtagccca
     6241 gttcaagcgc cgttttcaca gaagcgataa ccacgtcgtc tttcaggcga aaagtaccta
     6301 aaccgaatgc agggatagtc atagaattcc tctttttaat cactatgttc gttaactgag
     6361 gggattatga ccttcagcgc tttgtagaaa aagagcgaga aatgcagagg atttttgcga
     6421 attgagcaat aattaaatcg caggcaaaga aaaagccctg agctaatgct cagggctctt
     6481 aata
//
LOCUS       DAJVSD010000246         6457 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.246, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000246 DAJVSD010000000
VERSION     DAJVSD010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6457)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6457)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6457
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.246"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..6375
                     /gene="siiE"
                     /locus_tag="OQP62_003831"
     CDS             <1..6375
                     /gene="siiE"
                     /locus_tag="OQP62_003831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-fimbrial adhesin SiiE"
                     /protein_id="HCS1723255.1"
                     /translation="GANTADNITNISRPTFTIGNVDPDVIKVVVTIDGHDYNATKVGA
                     GWQFTPGNAIPDGSYNITVTVEDKAGNTATSKPLPVVIDTTAEIESVTLVTDSGDSDV
                     DNITKVDKPQFSIVTADDITHVRVKIDNAANWIELTKGGDGRWIFNVGSALPDGQHTL
                     LVDVTDIAGNVAQETLQFTIDTTLREPTIVLDPTHDTGDDTNDNLTRINKPVFIIGNV
                     DNDVSHIVVHLDGRDYTIENKGGNLTFTPDQPLSDGQHTISVTVTDIAGNTKTSAELQ
                     IEIDTQVQIDSVTLTTDSGVNDHDNVTNATRPSFEIATPDDVTSVLVSFDGVNWTPIS
                     KNAAGQWQFTAGSALSDGHYTLHVQATDRAGNTANSTLGFTVDTQIDGLSVVMLDDAG
                     KDSTDGITNITSPRFEISAREQLQSVTVILNGKSSTLTQGAGNKWLFTPDTPLVDGTY
                     KIEIVAEDIAGNKISKEVSFTIDTIVSDPSIDLLDADDTGESAVDNITSVTTPRFVIG
                     NVPADIDTVVIRINGVSYPVTANGNNLWEFQVPVALNDGVYEAVVVFRDIAGNTSETK
                     LPFTIDTTTSVSVRMEPASDTGSSNSDNLTNKQNPKFEGTAEPNAKLVITIVDDKSGR
                     EVLKHTITVGADGNWSVTPNILPDGMYTINVVATDVAGNTAQTQERFTIDTVTIDPTI
                     RLSDPSIDDQYEATSLRPEFKGLAEAFSTIMIQWDGKVVGSANANANGEWSWTPPSVL
                     APGSYVVSIVAKDKAGNESSQVDFPVVIPVIDVTPPTIKLSEESDSGALGDFTTNNKT
                     PTLIGSTLPNTIVSIYVDGVKVGEATADTAGRYTFQLSEMKDGHYVVQVGIVNPRDNS
                     ELRSTAVDVTIDTEVAELVWNISGMHEGGYINTVTPEIGGTSEPNSKITIFVNGVEKA
                     IAYTTGAGHWGVVLPALGNDGNYELTFKVEDVAGNIREFGPQNVILDTVISPLTVVLR
                     EADDSGKVGDWITNKSHVTIDGTAEAGSTLTIRNPQGVVIATLVVGNDGRWSAELDLR
                     EGSNAFVVVSEDKAGNGQQKDILIEHDTQIEISDISLSRDTNSGDKYDLITNNKSPVL
                     VAMTDPGATVQVYINGVLQGTVEASSSGNISYTMPANSADGEYQVQFVATDTAGNRVE
                     SAITTVTIDSQIAVFDIDEDSLPALSNNRALSVSGVGEAGSQVSIFVDGKLVNVVMVE
                     ADGSWRAPILLQDDGTFNIHFSITDVAGNTQVSKNYSVDVDSSTDFPTLNLEDASNSG
                     SLDDLITNHNKPVLVGTAEAGATIHIYVDEKIVANVLVLEDGTWSYQFDNALKDGEYS
                     IRVVAEDPAGNTAESPRLLVTIDTSTFIDNPAMVAGSDNGIFSNDSITSQTRPTFSIF
                     GEMNQSVQIFIDGVLVDTITVTDRNQVYRPESPLGDGSHSIYYVITDKAGNTATSKTL
                     NFTIDTFNTTPVAIDSIGGQTLAEMTGSDGKIYITDTTRNLLFSGSAEPNSKIEIIIN
                     GLNVGEVWVNEKGHWQMPVNPLYFTEGQLDITVKSTDRAGNVNQEKYSIWVDTHIQVF
                     TSELDDNKSSSKTDWWSNSSTITMRGMGEIGATVSLIVAGVTLATAVVAANGQWELST
                     DQLPEGKYDITLSIEDNAGNRKEEVHEIFIDRTPPNAPVVTYSDIVNDLIIMQGTAEA
                     KSQLIITDSNGNTYTLTVPDNGKWSMAIPYPSEGKFTITSVDAIGNRSDDVPLDIMKE
                     VPVISLSPDSDSGTVGDNITRDKQPTFIIGNLESDVVVVQVDINGTVYNAEKNADGVW
                     FFTPGTPLADGSYTISVIASDAAGNQKNSLPITVTIDSTLTVPEIALAAGEDNGVSDS
                     DNVTNHTQPKFTLQHIDADVTGVTVNVTHNGVTDTYQATQGADGWTFTPPAAWNDGTY
                     TLSVTVVDRAGNSQQSASLAVTVDSTVTVTADSQHDDASDDATPTAVTPPESETVNAE
                     SDTHLRTVPSAAEESVVKETAYSITLLNANSGDEIDRSISQTPSFEISVPENIVNVSV
                     MFEGEEFTLPITNQKAIFEVPLSLEDGEYTMDVKFIDKDDDFLIKEKTFSVDHSSADI
                     VNAMNARGKTEDDINDSPSTSSVGHNNNGAIDVFAVNEVTLPVDNQEEHA"
BASE COUNT         1810 a         1342 c         1662 g         1643 t
ORIGIN      
        1 ggagcgaata cagccgataa tattactaat atttcacgac ccacctttac gattggtaat
       61 gttgaccccg atgttatcaa agtcgtggtg acgattgatg gtcatgatta taacgcgact
      121 aaggttgggg ctggttggca atttacacca ggcaatgcca ttccggatgg ttcttataat
      181 attaccgtta cggttgaaga taaggccgga aataccgcga catcgaaacc attacctgtt
      241 gtgatagata cgacggctga aattgaaagc gtcacgttgg ttacagatag cggtgatagc
      301 gatgtagata acattaccaa agtcgacaag ccgcagttta gtattgttac cgctgatgat
      361 attacccatg tgcgcgttaa aatcgataac gccgctaatt ggattgaact cacaaaagga
      421 ggggatggtc gctggatatt taatgtcggt tcggcattac ctgatgggca acacactctc
      481 ttggttgatg tgactgatat cgccggcaac gttgcgcaag aaacgctgca gtttacgatt
      541 gatacgactc tgcgagagcc gacaattgta ctcgatccca cccatgatac tggtgatgat
      601 actaatgata atcttaccag gattaacaaa ccggtgttta ttatcggtaa tgtcgataat
      661 gatgtatcac acattgtggt tcatcttgat ggtcgggatt acaccattga aaacaaaggg
      721 gggaatttaa cctttacgcc ggatcaaccg ctgtctgacg gtcagcatac gatctctgtt
      781 accgtaacgg atattgctgg taataccaaa acatcggccg aactgcagat tgaaatcgac
      841 acgcaggttc agattgacag tgttacgtta acaacagata gcggcgtcaa cgatcacgat
      901 aatgtcacca atgctacccg tccctctttt gaaattgcaa cgcctgatga tgtgacatcg
      961 gtgctggttt ctttcgatgg cgtaaactgg acgcccatca gtaaaaatgc ggccgggcag
     1021 tggcaattta ctgcaggtag cgcattgtct gatggtcatt atactctcca tgtccaggcg
     1081 acggatcggg cagggaatac ggcaaattcc acgctgggct ttaccgtgga tacgcagatt
     1141 gacggcctga gcgtcgtgat gctggacgac gccggaaagg attctacgga tggtattacg
     1201 aatattacct ctccacgttt tgaaatttca gccagagaac agttgcagag cgtgacggta
     1261 attttaaacg ggaaatccag caccctgact cagggggcag gtaataaatg gctgtttacc
     1321 cctgatacac cgttagtgga tggaacttac aaaatagaaa tagtggctga agatatcgca
     1381 ggtaataaaa ttagcaaaga ggtatcattc acaatagaca ctattgtttc tgatcccagt
     1441 attgatttgc tggatgcgga tgatactggc gaaagcgctg ttgataatat tacgagtgtc
     1501 actacaccac gtttcgttat tggcaatgta cccgccgata ttgatactgt tgtaatcaga
     1561 attaacggcg tttcttatcc ggttacggca aatggcaata acctctggga atttcaggtt
     1621 cccgttgcgt taaacgatgg cgtatatgaa gccgttgttg tcttcagaga tattgccgga
     1681 aatacttctg aaactaagct gccctttacc attgatacca cgacaagcgt cagtgtcaga
     1741 atggagccag cgtctgatac cggcagctcc aatagcgata accttacgaa taagcaaaat
     1801 cccaaattcg aaggtactgc agagcccaat gcgaaactgg tgattaccat tgttgacgat
     1861 aagtcaggtc gggaggtttt aaaacacacg attacggttg gcgccgatgg caactggagt
     1921 gtgacgccga atatactgcc ggatggcatg tataccatca acgtcgtcgc aacagatgtc
     1981 gcgggaaata ctgcgcaaac gcaggaaaga ttcactatcg atacggttac gatcgatccc
     2041 accattcgcc tttcggatcc atctattgat gatcagtatg aggcaaccag cctgcgtcct
     2101 gagttcaaag ggctcgccga agcgttctcg acgattatga ttcagtggga tgggaaagtg
     2161 gtcggctcgg caaacgccaa tgcgaatggt gaatggagtt ggacgccgcc atcagtatta
     2221 gcgccaggct cctatgttgt gagcattgtt gccaaagata aagcgggtaa tgaatcgtcg
     2281 caggtcgact ttcctgtagt aatacctgtt attgatgtca cgcctccaac cataaagctc
     2341 agcgaggaga gcgatagtgg tgccttagga gactttacga cgaataataa aacgccgacc
     2401 ctgattggga gcacgttacc taatacaatt gtgagtattt atgtggatgg cgtgaaggtc
     2461 ggcgaggcga cagcggatac agcgggccga tatactttcc agttatcgga aatgaaagat
     2521 ggccattatg tcgtccaggt gggtatcgtc aaccctcgcg ataatagcga actgcgttcc
     2581 accgccgttg atgtcactat cgataccgag gttgctgaac tggtatggaa tatatctgga
     2641 atgcatgagg gcggatatat caacacggtg acgccggaga ttggcggcac cagtgagcca
     2701 aacagcaaaa tcactatctt tgtgaatggc gttgaaaaag cgattgctta tacgacaggc
     2761 gcaggacact ggggcgtagt attacccgct ttgggtaatg acggtaatta tgaattaacg
     2821 tttaaagttg aagacgttgc cggcaatatc agagagtttg gtccgcagaa tgtgatactg
     2881 gatacggtaa tttcgccgtt aaccgtggta ttacgcgaag ctgatgacag tggcaaagtt
     2941 ggcgactgga tcaccaataa atctcatgtc accatcgatg gtactgccga agccggaagt
     3001 actttgacca tcaggaatcc gcagggagtg gttattgcta ccctggtggt aggcaatgat
     3061 ggtcgatgga gcgcagaatt agatctgcgt gaaggtagta atgcctttgt cgtggtatcg
     3121 gaagataaag cgggcaacgg ccaacaaaaa gatattctga tagaacatga tacgcagatt
     3181 gaaatcagcg atatttcatt aagtcgggat actaatagcg gtgataaata tgatctgatt
     3241 accaataata agtctccggt actggttgcc atgaccgatc ccggcgcgac ggtacaggtt
     3301 tatattaatg gtgtgttaca aggcacagta gaggcgagtt cgtcaggtaa tattagctat
     3361 accatgccgg caaatagcgc cgacggcgag tatcaggtgc aatttgttgc tacggatact
     3421 gctggtaacc gggttgaatc tgcgattacg accgtgacaa tcgattctca aattgctgtc
     3481 tttgatattg atgaagattc attaccggcc ctctctaata accgggcgtt gtcagtctca
     3541 ggcgtcgggg aggctggttc tcaggtcagc atctttgtcg atggtaaatt agtcaacgtt
     3601 gttatggttg aggctgatgg ctcatggcgc gcgccgatac tgctgcaaga tgatggtacg
     3661 tttaatattc atttcagcat tactgacgtt gctggcaaca ctcaagtaag caagaattac
     3721 agtgtggatg tcgattcatc aaccgacttc ccaacgctca accttgaaga tgcgagcaac
     3781 tctggttcac ttgacgatct gattactaat cacaacaagc ctgtgttagt tggcaccgca
     3841 gaagcgggag ccacaatcca tatttatgtg gatgaaaaga tcgtggcaaa tgtgcttgtg
     3901 cttgaagatg gaacctggtc ctatcagttt gataatgcgt taaaagatgg tgaatattct
     3961 atccgtgtgg ttgccgaaga cccggcaggt aatacggcag aatcgcctcg cttactcgtc
     4021 acgatagata ccagtacgtt tatcgataat cctgctatgg tggcaggttc tgataacggt
     4081 attttcagta atgatagtat aacgagtcag acccggccta cgtttagtat ttttggagaa
     4141 atgaaccaga gtgttcagat tttcattgat ggggtgttag tcgatacgat cacggtgacg
     4201 gacagaaatc aagtttatcg acctgagtca ccgttgggcg atggttccca tagcatttat
     4261 tatgttatca ccgataaagc aggcaacacg gctacctcga aaacgctaaa ctttactatc
     4321 gataccttta atacgacgcc tgtcgccatt gattctatcg gtggacaaac gttagcagag
     4381 atgaccggta gtgatggcaa aatatatata acggacacga cgcgtaactt attgtttagt
     4441 ggcagtgccg agcccaatag caaaatagaa atcattatta atggcttaaa tgtgggggaa
     4501 gtttgggtta atgaaaaagg ccactggcag atgccggtga acccgcttta tttcacagaa
     4561 ggccaactgg atatcactgt taaatctacg gaccgtgctg gtaacgtaaa tcaggaaaag
     4621 tattccattt gggtcgatac gcatatccag gtatttacca gcgagcttga tgacaataaa
     4681 tcatcatcga aaacggactg gtggagtaat agctccacta ttaccatgag aggtatgggg
     4741 gaaattggcg ctacggtatc attaatcgtg gcaggggtca cgctggcaac cgctgtcgtt
     4801 gcggctaatg ggcagtggga attatcgacc gatcagcttc cggaagggaa atacgatatc
     4861 actttgagta ttgaggataa cgcaggcaac cgtaaggaag aggtacatga aatatttatt
     4921 gatcgaacgc cgccaaacgc tccggtcgta acttattcag acattgtcaa cgatctaatt
     4981 attatgcagg gaacggcgga agccaaatct cagctaataa taaccgatag taatgggaat
     5041 acttatacgt taaccgttcc tgataatggt aaatggagta tggcgatccc gtatccatcg
     5101 gaagggaagt ttaccattac gagtgtggat gcgattggta accggagtga tgatgtccct
     5161 ctcgatatca tgaaagaggt tcccgttatt tcattatctc cagactcaga cagtggtacg
     5221 gtgggcgata atattacgcg cgataagcaa cctaccttta ttatcgggaa tctggaaagc
     5281 gatgttgtgg tcgttcaggt cgatatcaat gggacagtat ataatgctga aaaaaatgcc
     5341 gatggcgttt ggttctttac gccaggtaca ccgttagctg atggttccta tacgatatcg
     5401 gtaatcgcaa gcgatgccgc gggtaatcag aaaaactcgt tacccattac cgttacgatc
     5461 gacagtacgc tgacggtgcc ggagattgcg ttggcagcag gtgaagacaa tggcgtttca
     5521 gacagcgata acgtgacgaa tcacacccag cctaagttca cgctgcagca tattgatgct
     5581 gatgtgaccg gggtgaccgt aaacgtgacg cataacggcg tgacagacac ctatcaggcg
     5641 acgcaaggcg cggatggctg gaccttcacg ccgccagccg cctggaatga tggtacctac
     5701 acgctgagcg tgacggtggt ggatcgcgcg gggaactcac agcaatctgc ttcgctagcg
     5761 gtgacggttg actcaacggt gacggtaaca gcggatagcc agcatgacga tgcgagcgat
     5821 gacgccacgc caacagcggt tactccaccg gagtctgaaa cagtgaatgc cgaaagcgat
     5881 acgcatcttc gtacagtgcc gtctgcggcg gaagaaagcg tggtgaagga gacggcctat
     5941 agtattacat tgttaaacgc taactctggg gatgaaatag atcgttcaat tagtcagaca
     6001 ccttcttttg aaatatcagt acctgagaat attgttaatg tcagtgttat gtttgaagga
     6061 gaagagttta ctctgccgat aactaaccag aaagcaatat tcgaagttcc gctatctttg
     6121 gaagatggtg aatatactat ggacgtgaaa ttcattgata aggacgatga tttcctgatt
     6181 aaggaaaaaa cattctcagt cgatcactcc tcggcggata ttgtgaacgc aatgaatgca
     6241 agaggaaaga ccgaggatga tattaatgat tccccttcca cgagttctgt agggcacaac
     6301 aataacggcg ctattgatgt tttcgccgtt aatgaagtta cgctacctgt agataatcaa
     6361 gaagaacacg cataataacg gaggcccctc acctttgggt gagggggttt acttatggat
     6421 aaaaaactag aaccttatta tttaagtgcg gaaacgg
//
LOCUS       DAJVSD010000247         6451 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.247, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000247 DAJVSD010000000
VERSION     DAJVSD010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6451
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.247"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(462..860)
                     /gene="vapC"
                     /locus_tag="OQP62_003832"
     CDS             complement(462..860)
                     /gene="vapC"
                     /locus_tag="OQP62_003832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(fMet)-specific endonuclease VapC"
                     /protein_id="HCS1723256.1"
                     /translation="MLKFMLDTNTCIFTIKNKPEHIRERFNLNTSRMCISSITLMELI
                     YGAEKSLAPERNFAVVEGFISRLEVLDYDTQAAIHTGQIRTELARKGTPVGSYDQMIA
                     GHARSRGLVVVTNNLREFERIPGIRIEDWC"
     gene            complement(860..1087)
                     /gene="vapB"
                     /locus_tag="OQP62_003833"
     CDS             complement(860..1087)
                     /gene="vapB"
                     /locus_tag="OQP62_003833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system antitoxin VapB"
                     /protein_id="HCS1723257.1"
                     /translation="MHTTLFFSNRTQAVRLPKSISFPEDVKHVEIIAVGRSRIITPVG
                     ESWDSWFDGEGASTDFMSTREQPAVQEREGF"
     gene            1264..1515
                     /locus_tag="OQP62_003834"
     CDS             1264..1515
                     /locus_tag="OQP62_003834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_449411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723258.1"
                     /translation="MHKKHMCPWLLPGLLGLARCAPVPHTYAAIIEAGFYPEGTDLQL
                     VLKIIETARQEIRLMDYSFTSWEVVRFEHSVSTKFSMSK"
     gene            1790..2596
                     /locus_tag="OQP62_003835"
     CDS             1790..2596
                     /locus_tag="OQP62_003835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1460 domain-containing protein"
                     /protein_id="HCS1723259.1"
                     /translation="MIMKVNAWTILLMSAHLTACAVPGTEKYQTSMDSVTAEKISRII
                     QSDVIPYKGENHGEVISRVSSAFLGTPYQADTLIGGPGIPEVLVANFNGVDCFTLADY
                     VEALARSDNQKSFLHNLARTRYAAGKVAYLSRRHFFSDWFAAAPRNARDVTPDISPDY
                     VVVDKQLNHKPDGGEYIPGLGIHPRKINYIPGRAINQQVMNHLKNGDYIGVYSPLDGL
                     DVSHVGIVVRHDEQVWFRNASSLAANRKVVDTPFMEYMHSRLGIVVLRAE"
     gene            complement(3229..4350)
                     /locus_tag="OQP62_003836"
     CDS             complement(3229..4350)
                     /locus_tag="OQP62_003836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000028980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723260.1"
                     /translation="MSITNQINKASSLASLRQPQRDKDGQIIKGSIWGTDISRTDYVQ
                     MTNGQDAQVLNVGFTDRSGRPMAFGNDSHDFVQALEDSLDETFNDGDFRTAVMENVFP
                     CEFRPYGTDPTPIRRQALQNRTVRFKHNGAFNPAKDAPSTTAIKGASVTVTPVLNPET
                     NKTGILCSAATHVSDFDMMGGWTEGALIQTVGDMQVQYSRQMFAAVVDVLKDTPDLQI
                     IEAAPLSGKPSDQAEDLLDTLALNLPVELGNTLSDYAVLVPERLEAILDRAAQRAGHE
                     DISELLGCTVCSYAGDDTGVYLLPKRFASISFRSTKDAKTVDVKVTRNSNTAGYDLEL
                     ISVVDVLATGSVKVKAGEFDVEKDASFPLIHVIRFTTPE"
     gene            complement(4452..4862)
                     /locus_tag="OQP62_003837"
     CDS             complement(4452..4862)
                     /locus_tag="OQP62_003837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000028498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723261.1"
                     /translation="MSISYRKLDIALSADKETVLVFGQELSTKYFTEIVVTTMLNSTG
                     SDMANSNRILNDIHAAGLDAGDYGKYSRWWAQSNAQERQEAERRRKEAKAHQERMAAI
                     HATPEEIAKAVAERKAREEALIKRFGNKGAAFGL"
     gene            complement(5197..5916)
                     /locus_tag="OQP62_003838"
     CDS             complement(5197..5916)
                     /locus_tag="OQP62_003838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000082599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HCS1723262.1"
                     /translation="MSQQEISIINLDQLVSMTSVEIAELTGKEHRNVLRDIRNMVEEL
                     NALKTEHCSKLSSPIGVIEDVYLNAQGKQQPLYRLDRKHTFILVAGYSVHLRAKCYDH
                     IQTLERRVLQLEDQKKRAAIQSANRRGVTWGDYCKANGLPAQKLMTILKKERKLFRVH
                     SSSGEWSVNPNYVEYFRIIKPTDHRFNPNGINIRFNAKGLEFFSRPENVLKMHRKVIA
                     VHGSDAAKQQHIQAVAKLEGR"
BASE COUNT         1670 a         1523 c         1553 g         1705 t
ORIGIN      
        1 aacgtcgcgt gcgacggccc gtcagggcga ggcccatgga tgggccgagt aatccgtagc
       61 caacacataa acaacttgaa gtatgaaggg tatataacgg gaaagaagcc atatcggcct
      121 ggtaaatcaa cgtctgtgat ttaagttgca ggaaacggct atggagaggg gatgcggcag
      181 ttatcgggca gtaacggcat tgttcagtga gtatccagga aacaaaaaaa gaagggagcg
      241 gtactccctt cgtaaccatg tcagaatacg acattttggt actcttttat ttattatctg
      301 gccgtaaaag ttatgctgtt ggcagatatc tccagtcaac ataaaaaaat accaccagct
      361 aaaaatgtga tgcaaaccac cattaagcag gtaaccaaat tgactgtgcc actacaatcc
      421 ggaaaagagt ttgaatccgg ggataacatc tgatgcagaa attagcacca gtcttcgatt
      481 cggatacccg gaatgcgttc aaactcgcgg agattgtttg tgacgacgac cagtccgcgg
      541 ctacgggcat ggccagcaat catctggtca taagacccga caggtgttcc cttgcgggcc
      601 agttcggtac ggatttgacc ggtatgtatc gctgcctgtg tatcgtaatc cagaacctca
      661 aggcgggaga taaatccctc cacgactgca aaattacgct ccggtgccag gcttttttca
      721 gcaccgtaaa tcagctccat taaggtgatg gagctgatac acattcggga tgtattgagg
      781 ttgaagcgtt ctctgatgtg ttcgggctta tttttgatgg tgaaaataca agtattggta
      841 tcaagcatga atttcagcat cagaatcctt cccgttcctg tactgcgggt tgttctctgg
      901 tgctcataaa atcagtactg gcgccttcgc catcgaacca gctgtcccag gattctccga
      961 ctggagtaat gattctgctt ctaccaaccg caatgatttc gacatgtttc acatcctccg
     1021 gaaaggatat cgatttaggc aatctgactg cctgggtccg gttactaaaa aaaagtgttg
     1081 tgtgcataac tgcccccttt ctggatatac aacgcgtata tccattatga gtagaggcga
     1141 tgtatatgtc aaagagatat acaggaaaaa ataatccagt cacatgacgc gcactccgca
     1201 gggcatcctt gtccgactcc ggcatttctg aatacatcca atgaaggaaa taccatgcaa
     1261 acaatgcata aaaaacatat gtgcccatgg cttctgcccg gtttgctcgg tctggctcgg
     1321 tgtgcgccag taccgcatac ttacgcagcc atcattgagg caggatttta tccggaaggt
     1381 acagatctcc agcttgttct taagataatt gagaccgcgc gacaggaaat ccgtctgatg
     1441 gactattcct tcacctcttg ggaggtggtc cggttcgaac attcagtgag tacaaaattc
     1501 tccatgtcaa agtgatcgtc agcgacgacc gccacaccga ggtggacgcg tcagaatcgc
     1561 tgatcggaca cgtcgcaatc tacactctga cttataagcc agcctgaagg ggcatgttgg
     1621 ctttgacgat caggcaaaaa acaacggcga ataaagtcgt atgatgatct tcacatttat
     1681 catcatcagc gttcatatta ctcaacctgt aatcaacctc tggcgttttt ctgtatccat
     1741 cacaaccatt tccggtaaag gtaaaaaagg gatttgaacc tttccggaga tgataatgaa
     1801 ggtaaatgca tggacaattt tgcttatgtc ggcgcatctg acggcctgtg ccgtccctgg
     1861 cacagaaaaa tatcagacca gcatggacag cgttacggca gaaaaaataa gccggattat
     1921 ccagtcggat gtcattcctt ataaaggcga aaaccatgga gaagttatca gccgcgtatc
     1981 gtctgctttt ctcggaacac cttatcaggc ggatacgctc atcggtgggc ccggcatccc
     2041 cgaagtcctt gtagcgaatt tcaacggcgt ggactgcttt accctggctg attacgttga
     2101 agccctggcc cgcagcgata atcagaaatc gtttctgcat aatcttgcca ggactcgcta
     2161 cgccgcgggc aaagttgctt atctcagccg ccggcacttc ttctctgact ggttcgccgc
     2221 agcaccgcgt aatgcacggg atgtaacgcc ggatatcagc cctgattatg tcgttgttga
     2281 caagcagctt aaccataaac ctgatggcgg cgagtacatt cctggtctgg gcatccatcc
     2341 tcgtaaaata aattacattc ccggaagagc catcaaccag caggtcatga accacctaaa
     2401 aaacggggat tatatcggtg tctactcccc gcttgacggg ctggacgttt cacatgtggg
     2461 tatcgtagtt cgccatgatg aacaggtgtg gttcaggaac gcctcctcat tggccgcaaa
     2521 cagaaaagtg gtggacacac cgtttatgga atacatgcat tccagactgg gcatcgttgt
     2581 gctgcgggct gaatgataaa gtcattaccg gagtcgccag ctgataatag ccgtccgaca
     2641 taggtattga aaccctgtgt actgtggggc cgacacggaa aattgctgta aattcgtgga
     2701 tttagtaaat actagaagat atttgtctgg agcgggcgaa gggaatcgag gtatcgaaga
     2761 taatcagccg ctaaccattt gcttcctaaa ggatgatgaa tccttgtggt tacagttatg
     2821 gttacacatt aatttatctc tggtcaagtc ctctcgtgac tctggtcaag tcctctcgtg
     2881 actctggaac gagtaaccga agtcctaact ttaagacagt ggccccaatc gtccagactt
     2941 gaaaggggcc aaggggggag aggcaccgac ctttgtctat tagataccta cagagatttt
     3001 tgtgagattt tttaatacaa ggtcataacc taccgccacc agcccccacc gaccgcaaag
     3061 tgaagacctg taagcaccag agcaatagct attgcgggca tactgctgat tgttattatc
     3121 tatcactccc tgtagagcat ctggcagacc aagtggacac agaggacgag ctcaaacaac
     3181 tcctgtaagc tcatggatgt actccttatg ttcactcagg gtttatagtt actctggggt
     3241 agtaaaccga ataacatgta tcaacgggaa agaggcgtct ttctcaacgt caaactcacc
     3301 tgctttcacc ttaacggaac cagtagccaa cacatcgacc acactgatta actcaaggtc
     3361 atacccagca gtgttactat ttcgggtcac tttgacatct accgtcttag cgtctttagt
     3421 tgacctgaaa gagatagaag cgaaccgctt aggcaggaga tagacacctg tatcatcgcc
     3481 cgcatagctg catacagtgc agcccaatag ctcactaata tcctcatgac ctgcgcgttg
     3541 agcggctcgg tccaagattg cctcaagtct ctcagggacc aatacagcgt aatcgctcag
     3601 tgtatttccc aactcgaccg gaagattcaa cgctaatgta tccagaagat cttcagcttg
     3661 atcagacggt ttaccactta gtggggctgc ctcaatgatt tgaaggtctg gcgtatcttt
     3721 caggacatcg accacagcgg cgaacatctg gcggctgtat tgaacctgca tatcacctac
     3781 agtctggatt aatgccccct cggtccaacc gcccatcata tcgaagtcag atacatgagt
     3841 agcagcagaa cacaggatgc ccgtcttatt ggtctcaggg ttcaacactg gggtgacagt
     3901 tacgcttgcc cctttgatgg ctgtggtaga cggagcatcc ttagctggat taaacgcgcc
     3961 attatgctta aagcggacgg tgcgattctg gagagcctga cggcgaatag gcgtagggtc
     4021 agtgccgtat gggcgaaact cacaagggaa gacattctcc attacagcag tgcggaagtc
     4081 tccatcattg aaggtctcat ccaaagagtc ctccagcgcc tgaacaaaat catgtgaatc
     4141 attcccgaag gccatcggac ggcctgagcg gtccgtaaag cctacgttga gaacttgggc
     4201 gtcttgacca ttggtcatct gaacatagtc agtgcgtgag atgtcagtgc cccatataga
     4261 ccccttaatg atttgaccgt ctttatctcg ctgaggctga cgcagagaag ccagtgagga
     4321 tgctttgtta atttgatttg taatagacac gatgaatatc tccttattgt atgaatgcac
     4381 tacgtaaaaa gtaactggtg acaccattgg tcttatctca gaatccaagc agcgccaccg
     4441 aaagttatca gttacagccc gaaagcggcc cctttattgc cgaagcgttt aatcaatgct
     4501 tcctctcggg ctttacgttc agcgaccgcc ttagcaatct cttctggtgt cgcatgaata
     4561 gcagccatac gttcttgatg tgccttagct tctttacgtc ggcgttcagc ctcttggcgc
     4621 tcctgtgcgt tgctttgagc ccaccagcgg gaatacttgc cgtaatcacc tgcatcaaga
     4681 ccagcggcgt gaatatcgtt aagaatacga tttgagttcg ccatgtcaga gcctgtactg
     4741 ttcagcatgg ttgtaacgac aatttcggtg aaatacttag tggatagctc ctgaccgaat
     4801 accagtacag tttctttgtc agcgctcagt gcgatatcca gtttgcgata agaaatagac
     4861 atgtttgttt ctcctttgaa aagatgtttt aaaaggatta aactcatcgg tcttccatag
     4921 gtattcctac ggcgtctccc cgtatcttgg tcagttcaaa aggtggtgct agctgtgcta
     4981 gtgggttaat tacatgaaat ctcttggggt cagccctgcg tcaaccgcca tgagacagag
     5041 ggcagcttta gagtaatacg ggcggttttc cttggcaggc agacccagag tagctatcag
     5101 tgccttgggg ggtaccacca tcaggcgtaa cgccttacgg ccttctggtg tccttgggtc
     5161 aatcttgatt gtgtcatttg tgttattagt catgaattac ctcccctcca gctttgctac
     5221 tgcctgtatg tgttgctgtt tagcagcgtc gcttccatga accgctatga cctttctgtg
     5281 catcttgagt acgttttcag gtcggctgaa gaactccagc cccttagcgt taaaccgaat
     5341 gtttataccg tttgggttga atcgatggtc agtaggtttg ataattcgaa agtactccac
     5401 atagtttgga ttgactgacc actcgccact gcttgaatgt actcggaaca gcttgcgctc
     5461 tttcttaagg atggtcatca gtttctgagc gggtagacca ttggccttgc agtaatcgcc
     5521 ccaagtcacg cctcgacgat tagctgactg aatggctgct cgtttcttct ggtcttccag
     5581 ttgaagaact cgacgttcta acgtctgaat atggtcgtaa cacttggcgc gtaggtgaac
     5641 agaatagcca gcgaccagaa taaaagtatg cttacggtcg agacggtaca gaggctgctg
     5701 tttcccctgc gcatttagat agacatcttc aatcacccct ataggactgc tcagttttga
     5761 gcagtgctca gttttgagtg cgttaagctc ctcaaccata ttgcgaatat cacgaaggac
     5821 atttcggtgc tccttgcctg tcagctcagc aatttcaact gaggtcatgg acacaagctg
     5881 gtcgaggtta atgatgctga tttcttgttg agacatagct tgatttcctt tttgtttgca
     5941 ccctgaagtc gcacccccac tgacctactc aaagtcccca agcgaaggga gaccagcagg
     6001 acaacaggat gcaaacagaa tgactttgag attgaatgaa tgaatgacga tgattgtgtc
     6061 gtagctgtgc ggagctactg tatggtgaag cgcgagaggt ggaactttga gagacacgtg
     6121 gtgagtggtt cggagtgtgt ctcctattag taagtcgtat tgattcgtat tgattcgtat
     6181 tgatttacta ctgggagggt ctctcaaggg tctctgagcc acgctaggca tcaggccata
     6241 cgaaactaca tggcatccta aagaatggag tacaggacca tacagggcca tacagttagc
     6301 ttctggggta atgccttgag gagacctata ggtttggtga ttgattgtta taaatatcat
     6361 cacctcttaa ggtattccct tagagttaat ctttaattgt gtctttaagt aaactataag
     6421 ttaatactat aagttaatct ttaattgtgt c
//
LOCUS       DAJVSD010000248         6376 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.248, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000248 DAJVSD010000000
VERSION     DAJVSD010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6376
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.248"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            90..179
                     /gene="kdpF"
                     /locus_tag="OQP62_003839"
     CDS             90..179
                     /gene="kdpF"
                     /locus_tag="OQP62_003839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
                     /protein_id="HCS1723263.1"
                     /translation="MSAGVITGIVLVFLLLGYLVYALINAEAF"
     gene            179..1858
                     /gene="kdpA"
                     /locus_tag="OQP62_003840"
     CDS             179..1858
                     /gene="kdpA"
                     /locus_tag="OQP62_003840"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HCS1723264.1"
                     /translation="MAAQGFLLIASFLLILLVLAKPLGSGLARLIAAVPLPGVAGVER
                     ILWRTLGITDHEMNWRQYLLALLTLNLLGLGILFCLLFWQEWLPLNPQRLPGLSWDLA
                     LNTAVSFVTNTNWQAYSGESTLSYFSQMAGLTVQNFLSAATGIAVVFALIRAFTRQNV
                     HTLGNAWQDLVRITLWILFPVALIIALFFIQQGVPQNLSAYQPITTLEGAKQLLPMGP
                     VASQEAIKMLGTNGGGFFNANSSHPFENPTALTNLAQMLAIFLIPAALCFAFGEAAGD
                     RRQGRALLWAMSFIFVVCVAVVMWAEVQGNPHLLAAGADSSVNMEGKEARFGVLASSL
                     FAVVTTAASCGAVNAMHDSFTALGGMVPMWLMQIGEVVFGGVGSGLYGMLLFVLLAVF
                     IAGLMIGRTPEYLGKKIDVREMKMTALAILVTPMLVLLGSALAMMTDAGRSAMLNPGP
                     HGFSEVLYAVSSAANNNGSAFAGLSANSPFWNCLLAFCMFVGRFGVIIPVMAIAGSLV
                     SKKVQPASQGTLATHGALFIGLLIGTVLLVGALTFIPALALGPVAEHFSLP"
     gene            1879..3588
                     /gene="kdpB"
                     /locus_tag="OQP62_003841"
     CDS             1879..3588
                     /gene="kdpB"
                     /locus_tag="OQP62_003841"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HCS1723265.1"
                     /translation="MSRKQLALFEPVLLVQALTDAVKKLSPRAQWRNPVMFVVWAGSV
                     LATLLTLAMVTGQIAGSALFTGVISLWLWFTVLFANFAEALAEGRSKAQANSLKGVKK
                     TAFARRLRAPRHDAQADNVPAAELRKGDIVLVKAGDIIPCDGEVIEGGASVDESAITG
                     ESAPVIRESGGDFASVTGGRAVEAAGDVDVLLLDKTGTITLGNRQASDFIPARGVDER
                     TLADAAQLASLADETPEGRSIVILAKQRFNLRERDVQSLHATFVPFTAQSRMSGINID
                     NRMIRKGSVDAIRRHVESNGGHFPADVEQNVENVARLGATPLVVVEGARVLGVIALKD
                     IVKGGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQ
                     YQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVH
                     IGKQMLMTRGSLTTFSIANDVAKYFAIIPAAFAATYPQLNALNVMGLHSPNSAILSAV
                     IFNALIIIFLIPLALKGVSYKPLSASAMLRRNLWIYGLGGLVVPFIGIKVIDVLLTLL
                     DLA"
     gene            3597..4181
                     /gene="kdpC"
                     /locus_tag="OQP62_003842"
     CDS             3597..4181
                     /gene="kdpC"
                     /locus_tag="OQP62_003842"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HCS1723266.1"
                     /translation="MIGLRPAFSTMLFLLLLTGGVYPLLTTALGQWWFPWQANGSLIH
                     KDNLIRGSALIGQSFTAAGYFHGRPSATADTPYNPLASGGSNLAASNPELDAQIQARV
                     AALRAANPQASSAVPVELTTASASGLDNNLTPGAAAWQIPRVAAARQLPVEQVAQLVA
                     EYTHRPLASFLGQPVVNIVELNLALDALQGHRAK"
     gene            4178..>6376
                     /gene="kdpD"
                     /locus_tag="OQP62_003843"
     CDS             4178..>6376
                     /gene="kdpD"
                     /locus_tag="OQP62_003843"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     KdpD"
                     /protein_id="HCS1723267.1"
                     /translation="MNDEPLRPDPDRLLEQTPPPHRGKLKIFFGACAGVGKTWAMLAQ
                     AQRLRAQGLDVVIGVVETHGRKETAALLDGLTILPPKRHSHRGRQIREFDLDAALARR
                     PALILMDELAHSNAPGSRHPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGVTGI
                     QVRETVPDPFFDAADEVVLVDLPPDDLRQRLNEGKVYIAGQAERAIEHFFRKGNLIAL
                     RELALRRTADRVDDQMRAWRAHPGEEKVWHTRDAILLCIGHNTGSEKLVRTAARLASR
                     LGSVWHAVYVETPTLHRLPEKQRRAILSALRLAQELGAETATLSDPAEEKAVVRYARE
                     HNLGKIVMGRPASRRWWRRDAFADRLARRAPDLDQVIVALEEPPARALAQTPDNRPFK
                     EKWRGQIQGCLVAVALCAITTFIAMQWLVTFDAANLVMLYLLGVVVIALLYGRWPSVV
                     ATVINVASFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRYQARVARYR
                     EQRTRHLYEMSKALAVGRSEHDIAATSERFIASTFQARSQILLPDTNGKLLPLTHQQG
                     MTPWDDAIARWSFDKGQPAGAGTDTLPGVPYQILPLKSADKTYGLAIVEPGNLRQLMV
                     PEQQRLLETFTLLVANALERLTLTASEEQARLASERESIRNALLAALSHDLRTPLTVL
                     FGQAEILTLDLASAGSPHARQASEIRQHILNTTRLVNNLLDMARIQSGGFN"
BASE COUNT         1241 a         1778 c         1934 g         1423 t
ORIGIN      
        1 tttacactcc gcccgccaat ttttgcgaaa tctttgcagc caaaaaatta cctttctcag
       61 gagtaaaaca atgccactgg aggtgctctg tgagtgcagg cgtgataacc ggcatcgtgc
      121 tggttttctt acttttaggt tatctggtct atgccctgat taatgcggag gcgttctgat
      181 ggccgcgcaa ggatttttac tgatcgccag ttttttactg attttattgg tactggcgaa
      241 accgttgggt tcgggcctgg caaggctcat cgccgccgtt ccgttgccgg gcgtggctgg
      301 cgttgagcgt atcctctggc ggactcttgg cattaccgac cacgaaatga actggcgtca
      361 gtatttactg gcgctactga cgctcaatct gctgggactg ggcatcctgt tttgcctgct
      421 attctggcag gagtggctgc ccttaaatcc gcagcggcta ccggggctgt cctgggatct
      481 ggcgctgaat accgccgtca gctttgtcac caataccaac tggcaagcct acagcggcga
      541 aagcacgctg agctacttta gccagatggc ggggctgacg gtgcaaaatt tcctgtcggc
      601 ggcgaccggg attgcggtgg tttttgcact tatccgcgcc tttacgcgcc agaatgtgca
      661 cacgctgggt aatgcctggc aggatctggt acgcattacg ctatggatat tatttcctgt
      721 cgcgttaatt atcgcgctgt tttttatcca acagggcgta ccgcaaaacc tgtcggctta
      781 tcagcccatc accactcttg aaggcgctaa acaactcttg ccgatggggc cggttgcttc
      841 gcaggaggcg atcaaaatgc ttggcaccaa cggcggaggt ttctttaacg ccaactcttc
      901 gcatccgttc gaaaatccca ccgcgctcac taatctggcg cagatgctgg cgatattttt
      961 gattccagcc gcgctctgtt tcgcctttgg cgaagcggcg ggcgatcgcc gtcagggacg
     1021 cgccctactg tgggcaatgt cattcatttt tgtggtctgc gtagcggtag tgatgtgggc
     1081 ggaagttcag ggaaatccac atctgttggc ggcaggcgcg gacagtagcg tcaacatgga
     1141 aggtaaagag gcacgctttg gcgtgctggc cagcagcctg tttgccgtcg tcacgaccgc
     1201 ggcgtcctgc ggggcggtaa atgccatgca cgactcgttt accgctctgg gcggtatggt
     1261 gccgatgtgg ctgatgcaaa ttggcgaagt ggtctttggc ggcgtcggtt cagggctgta
     1321 cggcatgttg ctgtttgtcc tgttggcggt gtttatcgcg gggctgatga tcggtcgcac
     1381 gccggagtat ctggggaaaa aaatcgacgt gcgcgaaatg aaaatgaccg cgctggcgat
     1441 tctggtcacg ccgatgctgg tcttgttggg ttcggcgctg gcgatgatga cggatgccgg
     1501 acgcagcgca atgctgaacc ctggcccgca cggttttagc gaagtgctat atgccgtctc
     1561 ctctgccgcc aacaacaacg gtagcgcctt tgcaggtctg agcgctaact cgcctttctg
     1621 gaactgtttg ctggcgttct gcatgttcgt cggacgtttc ggcgtgatta ttcctgtcat
     1681 ggccatcgcc ggatcgctgg tcagtaaaaa agtacagccg gccagtcagg gaacgctggc
     1741 gacccacggc gcgctattta ttggactgct cattggcacg gtactgctgg tcggcgcgct
     1801 gacgtttatt cctgccctgg cgcttggccc ggtagcggaa catttctctt taccttgagc
     1861 gatgcggagt acattgatat gagtcgcaag caactggcgc tgtttgaacc tgttttactc
     1921 gtacaggcgc taacggatgc cgtaaaaaaa ttaagcccac gcgcccagtg gcgtaacccg
     1981 gtgatgtttg tggtctgggc cggcagcgtg ctagccactc tgttaacgct cgctatggta
     2041 acaggacaaa tagcgggaag cgccttgttt acaggggtga tcagcctgtg gttatggttc
     2101 accgtactgt tcgccaattt tgccgaagca ctggcggaag gccgcagcaa agcccaggca
     2161 aacagtctga aaggggtgaa aaagaccgcg ttcgctcgcc gtctgcgcgc cccgcgccat
     2221 gatgcgcagg ccgataacgt gcccgccgct gaactgcgga aaggcgacat tgtcctggtc
     2281 aaagcgggcg atattattcc ctgcgacggc gaggtcatcg aaggcggcgc ctcggtggat
     2341 gaaagtgcga ttaccggcga atccgcgccc gtgatccgcg agtccggcgg cgatttcgcc
     2401 tctgtcaccg gcggccgcgc cgtagaagcc gcgggcgatg tcgacgtgtt actgctggat
     2461 aaaaccggca ctatcacgct cggcaaccgc caggcgtccg attttatacc cgcccgaggg
     2521 gtggacgaac gcacgctggc tgacgccgcg cagctcgctt cgctggccga cgaaacgccg
     2581 gaaggccgca gcattgtgat cctcgccaaa cagcgcttta acctgcgtga acgcgatgtg
     2641 cagtcgcttc atgccacctt tgttccgttt accgcgcaaa gccgcatgag cgggattaat
     2701 atcgataacc ggatgatccg taaaggctcg gtggacgcga ttcggcgtca tgtcgagagc
     2761 aatggcggcc attttcccgc cgatgtcgag caaaacgtcg agaacgtggc gcgtctgggc
     2821 gcgacgccgc tggtggtcgt ggaaggcgcg cgcgtactgg gtgttatcgc cctcaaggat
     2881 atcgttaaag gcggcattaa agaacgtttc gcccagctac gaaagatggg cattaaaacg
     2941 gtgatgatca ctggcgataa ccgcctgacg gcggcagcga ttgccgccga agccggtgtg
     3001 gacgattttc ttgccgaagc cacgccggaa gccaagctgg cgttgatccg tcaatatcag
     3061 gcggaaggac ggctggtcgc catgaccggc gacggcacta acgatgcccc ggcgctggcg
     3121 caggctgacg tcgcggtggc gatgaactcc ggcacccagg cggcgaaaga agccggtaat
     3181 atggtggatc tggactctaa cccgaccaag ttgattgaag tggtgcatat cggtaagcag
     3241 atgctgatga cgcgcggctc gctcaccacc ttcagtatcg cgaatgatgt agcgaaatat
     3301 ttcgccatta ttcccgccgc gtttgccgct acctatccgc agctaaacgc gctcaacgtg
     3361 atggggctgc attcgccgaa ctccgccatt ctgagcgcgg tgatctttaa cgccctgatt
     3421 atcatatttc tgatcccgct ggcattaaaa ggcgtgagtt ataagccgct ttccgcatcg
     3481 gccatgctgc gccgtaattt atggatctat ggtctgggtg gtctggtggt gccgtttatt
     3541 ggcatcaaag tgattgatgt gctgctgacc ctgctggatc tggcgtgagg tgtatgatga
     3601 tcggtttacg tcctgctttt tcgacaatgt tatttctgct gttattgacc ggcggcgtgt
     3661 atccgcttct gaccacggcg ctggggcagt ggtggtttcc ctggcaggct aatggctcgc
     3721 tgattcataa agacaatctg atacgcggct cagcgcttat cggacaatcg tttaccgccg
     3781 cgggctattt tcatggccgg ccctccgcca ccgccgatac gccttataat ccactggcgt
     3841 cgggcggaag caacctggcc gccagcaatc ccgaactgga tgcgcaaatt caggcccgcg
     3901 tcgccgcgct acgcgccgct aacccccagg cgagttccgc ggttccggtt gagctgacga
     3961 cggcgtcggc aagcgggctg gataataatc tgacgcccgg cgccgcggca tggcaaatcc
     4021 cccgcgtggc ggcggctcgc cagcttcccg ttgaacaggt cgcgcaactg gttgcagaat
     4081 atacgcacag gccgctggcg agctttcttg ggcaaccagt ggtgaatatt gttgagctta
     4141 atctggcgct ggatgcgcta cagggacaca gagcgaaatg aacgacgaac ccttgcgtcc
     4201 tgatccggat cgcttgttgg aacaaacgcc cccgccccac cgggggaagt taaaaatttt
     4261 cttcggcgcc tgcgcaggcg tcggaaaaac ctgggcgatg ctggcgcaag cgcagcggct
     4321 gcgagcgcag gggctggatg tggtgatcgg cgtggtagag acgcacggcc gtaaagagac
     4381 cgccgcgcta cttgacgggc tgaccattct gccgccaaaa cgtcactcgc accgggggcg
     4441 gcaaattcgc gaatttgacc tggatgccgc cctcgcccgg cgtccggcgc tgattttaat
     4501 ggatgagctg gcgcacagta acgcgcctgg ctcacgccat cctaagcgct ggcaggatat
     4561 tgaagagctg ctggaagcgg gaatcgacgt tttcaccacc gtgaacgtac aacatctgga
     4621 aagtctgaat gatgtggtga gcggcgtcac ggggattcag gtgcgcgaga ccgtccccga
     4681 tccctttttt gatgccgctg atgaagtcgt actggtcgat ctgccgcccg acgatctgcg
     4741 ccaacggctc aacgaaggta aagtgtatat cgccggtcag gcggaacgcg ctattgaaca
     4801 ttttttccgc aagggcaatc tgatcgccct ccgcgagctg gcgctacgcc ggacagccga
     4861 tcgcgtggac gatcagatgc gcgcctggcg cgcgcatccg ggcgaagaaa aagtatggca
     4921 tacccgcgat gcgattttac tgtgtatcgg gcataacact ggcagcgaaa aactggtgcg
     4981 taccgcggcg cgtctggcct cccggctcgg cagcgtctgg cacgccgtct atgtcgaaac
     5041 gccaacgtta caccgcttac cggaaaaaca acggcgggct attttaagcg cgctgcgcct
     5101 ggcgcaggag cttggcgcgg aaaccgccac cctgtccgat cccgccgaag agaaagcggt
     5161 cgtgcgctat gcccgcgagc ataatctggg gaaaatcgtc atgggccgcc cggcgtcgcg
     5221 acgctggtgg cgacgtgacg ctttcgccga ccgtcttgcc aggcgcgcgc cggatctcga
     5281 tcaggtaatc gtcgcgctgg aagagccgcc agcgcgcgcg ttggcgcaaa cgcctgataa
     5341 ccgacctttt aaagagaaat ggcgtggaca gattcagggc tgtctggtcg ccgtggcgct
     5401 ttgcgccata accacgttta tcgctatgca gtggcttgtc accttcgacg ccgccaatct
     5461 ggtgatgctc tatttgctgg gcgtagtggt gattgcgctg ctttacggac gctggccgtc
     5521 ggtggtggcg acggtgatta acgtggcgag tttcgatctc ttttttatcg caccacgcgg
     5581 tacgctcgcc gtttcggacg tgcagtattt gctgaccttt gccgtgatgc tgacggttgg
     5641 tctggtgatt ggcaatctta ctgccggggt gcgctatcag gcgcgcgtcg cccgttatcg
     5701 ggaacagcgt acccgccatt tatatgaaat gtctaaagcg ctggccgtcg ggcgtagcga
     5761 acatgatatc gccgcgacca gcgagcggtt tatcgcctcg acgtttcagg cgcgcagcca
     5821 aattttatta cctgatacta acggtaagtt gctgcctctc acccaccagc aaggcatgac
     5881 gccgtgggac gacgcaattg cgcgctggag ttttgataaa ggccagcctg ccggcgcagg
     5941 caccgatacc cttcctggcg tgccttatca aatcctgccg ctgaaaagcg ccgataaaac
     6001 gtacggtctg gctatcgtcg aaccgggtaa tttgcgtcag ttaatggtgc cggagcagca
     6061 acgcctgctg gaaacattca ctctgcttgt cgccaacgcg ctggaacgac tgacgctgac
     6121 cgccagcgaa gaacaggcgc gtctcgccag cgagcgcgaa agtattcgca acgctctgct
     6181 ggcggctctg tcgcatgatt tacgcacgcc gctgacggta ttgttcggcc aggcggaaat
     6241 tttgacgctg gatttagcca gcgcaggatc gccccacgcg cgtcaggcca gtgaaatccg
     6301 ccagcatatt ctcaacacca cccggctggt gaataatttg ctggatatgg cgcgtattca
     6361 gtccggcggg tttaat
//
LOCUS       DAJVSD010000249         6344 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.249, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000249 DAJVSD010000000
VERSION     DAJVSD010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6344
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.249"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..653)
                     /gene="ssaT"
                     /locus_tag="OQP62_003844"
     CDS             complement(<1..653)
                     /gene="ssaT"
                     /locus_tag="OQP62_003844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-2 type III secretion system apparatus
                     protein SsaT"
                     /protein_id="HCS1723268.1"
                     /translation="MTQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVL
                     MSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLL
                     DTLRGATMGTIFNSTMEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPG
                     RTLLFDRQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFS
                     "
     gene            complement(654..920)
                     /gene="ssas"
                     /locus_tag="OQP62_003845"
     CDS             complement(654..920)
                     /gene="ssas"
                     /locus_tag="OQP62_003845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-2 type III secretion system apparatus
                     protein SsaS"
                     /protein_id="HCS1723269.1"
                     /translation="MNDSELTQFITQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQI
                     QDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQIMLRIGEHG"
     gene            complement(917..1564)
                     /gene="ssaR"
                     /locus_tag="OQP62_003846"
     CDS             complement(917..1564)
                     /gene="ssaR"
                     /locus_tag="OQP62_003846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-2 type III secretion system export apparatus
                     protein SsaR"
                     /protein_id="HCS1723270.1"
                     /translation="MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNAL
                     GIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYR
                     QFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLI
                     YLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS"
     gene            complement(1632..2600)
                     /gene="ssaQ"
                     /locus_tag="OQP62_003847"
     CDS             complement(1632..2600)
                     /gene="ssaQ"
                     /locus_tag="OQP62_003847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-2 type III secretion system cytoplasmic ring
                     protein SsaQ"
                     /protein_id="HCS1723271.1"
                     /translation="MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINY
                     HNELGRVWIAEQCWQRWCEGLIGTANRSAIEPELLYGIAEWGLAPLLQASDATLCQNE
                     PPTSCSNLPHQLALHIKWTVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVV
                     VPVYLGWCQLTLIELESIEIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMK
                     FDELVQDIETLLASGSPMLKSDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDV
                     LPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRITRWYLCKNTA"
     gene            complement(2581..2955)
                     /gene="ssaP"
                     /locus_tag="OQP62_003848"
     CDS             complement(2581..2955)
                     /gene="ssaP"
                     /locus_tag="OQP62_003848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-2 type III secretion system apparatus
                     protein SsaP"
                     /protein_id="HCS1723272.1"
                     /translation="MRITKVEGSLGLPCQSYQDDNEAEAERMDFEQLMHQALPIGENN
                     PPAALNKNVVFTQRYRVSGGYLDGVECEVCESGGLIQLRINVPHHEIYRSMKALKQWL
                     ESQLLHMGYIISLEIFYVKNSE"
     gene            complement(2936..3313)
                     /gene="ssaO"
                     /locus_tag="OQP62_003849"
     CDS             complement(2936..3313)
                     /gene="ssaO"
                     /locus_tag="OQP62_003849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-2 type III secretion system apparatus
                     protein SsaO"
                     /protein_id="HCS1723273.1"
                     /translation="METLLEIIARREKQLRSKLTVLDQQQQAIITEQQICQTRALAVT
                     TRLKELMGWQGTLSCHLLLDKKQQMAGLFTQAQSFLTQRQQLENQYQQLVSRRSELQK
                     NFNALMKKKEKITMVLSDAYYQS"
     gene            complement(3316..4617)
                     /gene="ssaN"
                     /locus_tag="OQP62_003850"
     CDS             complement(3316..4617)
                     /gene="ssaN"
                     /locus_tag="OQP62_003850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SctN family type III secretion system ATPase
                     SsaN"
                     /protein_id="HCS1723274.1"
                     /translation="MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGE
                     LCCIKPGEELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVI
                     DGFGRPLDGCELPDVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGI
                     FSAPGVGKSTLLAMLCNAPDADCNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT
                     SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE
                     YPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR
                     LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRRLALYQEVELLIRIGEYQRGV
                     DTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE"
     gene            complement(4607..>6344)
                     /gene="ssaV"
                     /locus_tag="OQP62_003851"
     CDS             complement(4607..>6344)
                     /gene="ssaV"
                     /locus_tag="OQP62_003851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SPI-2 type III secretion system apparatus
                     protein SsaV"
                     /protein_id="HCS1723275.1"
                     /translation="AGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAE
                     VSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGD
                     TIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGI
                     IVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLAL
                     PIILIRRKKSVVSANGIEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMRWFLFE
                     DTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLP
                     NGMGQICWLSKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNA
                     MEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLML
                     TEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQ
                     ILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESI
                     DLSEEELADNEE"
BASE COUNT         1832 a         1612 c         1295 g         1605 t
ORIGIN      
        1 gagaagaaaa acacattcaa ttgttgtgcc gaccgattta aaagacctaa agccagatcg
       61 gctaatacca tacatattat ggcaggaaga gagaagctga tgcataattg ataaagcgtt
      121 ctccactctg cctggatata ttttaaaaat tgccgatcaa ataataaagt acgccctggc
      181 ggtaaatatt ggtatgactc atacagaatg tttaatataa actccatgcc gccgcttata
      241 aagaaaataa cacacaaaaa ctggctgaaa agcaagccaa aaagtgaggt ttcagcttcc
      301 attgtagaat tgaatatcgt acccattgtc gcgccacgta aagtatcaag cagaaacccc
      361 gccatatcaa cggcccaaaa gggaaccgcc gcacaaaacc caattaaaaa accaataatc
      421 acctctccgg tgactaaccc taaccagctg taatctttac caatatgcat cataatcttc
      481 tgctggtaaa tgattggtaa tatgggaaag gtaagtgaca taagcacgcc attacgtaaa
      541 agcgcggccc ctaaactgcc actttttaat agaggaagta ataaagaaag gctcaatggt
      601 cgaataaaag ccacagccaa tgcaataagc cactcattta cctgttgtgt cattcaacca
      661 tgctctccaa ttcgtaacat tatctgccgg gtataattca acaggattcc gctaagccat
      721 gggtagctga ccatcaaagt tattgcaatt gctaataatt taatcatgaa ctgtagcgtt
      781 tggtcctgaa tttgagtcaa ggcctggaca agacttacga tgacaccaac taccgatgcc
      841 accaacacca ccggcataga cgtaaaaagg acgatccata aaagttgcgt tataaattgc
      901 gtcaattcag aatcattcat gaaaagctct gtaccaattg cgccagtgtc agatcccaac
      961 cgcctgccag taaaaatatt agcagcttaa acggtaatga aatggtcatt ggcgatacca
     1021 tcatcatccc catagccagc agtatatttg aaataagcag gtcaatagcc agaaagggaa
     1081 gataaataag taatccaatc cgaaatgcct gcgttaactg actcaccgta aatgccggaa
     1141 ttaatatgag caaagaatca ggttttatct ttctttttat gtcttcaggc caggttcgtt
     1201 ttatcaaatt ccgaaaataa ttggcttcct tctcttcaga gtttttttgc aaaaactgtc
     1261 gataaggcgc taatgcttta ctgtcccact cagacgtcca gaaaggagcg ccagcgacct
     1321 gaaccggatg ccagcgctct tttacagcta atagcgtcgg ccccataatg aataaggaaa
     1381 gtacaagcgc gaagccatac agtgcgatat ttggaggaac ttgttgaata cccagagcat
     1441 ttcgtaaaat cgaaaatacc accgccagtt taaggaaaga ggttcccatg acgataatga
     1501 gaggcagtat tgaaagcaga aacaatatac caatcagttg caaaggcgaa tcgggtaaag
     1561 acatactgta tctctcatga cacgacctgg aacgctatta tattgttcgc atattatttt
     1621 tcttatcagg tttacgctgt atttttgcaa agataccaac gtgtaatacg taccatgaat
     1681 tcattcccac aggcaatcaa ctcaccttgc ccaataatac ggtcatttac tcttatcgtc
     1741 acttctggcg caaaacatcc gcctacaggc aaaacgtccc ccgttttaag ttgtcgtaat
     1801 tgtccaattt ccagactcgc acgtccaatc tcaaagagca cctgttgtgg tatctgctca
     1861 agttcgactg aagacgttcc atcactcttt aacatcgggc tccctgacgc aagtagcgtt
     1921 tcgatatcct ggactaattc gtcaaatttc atcgtgttat cctctgtcag caacaccctc
     1981 gcgtaaatac ccccaggtag ttgaatagca aaaaaaccga gtctgatgtc gccaaagcaa
     2041 tgaatccgaa cgcccatgcc gatttcgata gactcaagtt caattaatgt aagctgacac
     2101 cagcctaaat atacagggac taccacagga ggagcaggat aaatctgttg acgctcagca
     2161 gaaagctctc cgactatatt gcgcaaaaaa cccgttggcc atgtaaaaat aatgctatgg
     2221 aactcatgtt cttcaactgt ccatttaata tgcaacgcta gctgatgtgg tagattactg
     2281 caggatgttg gcggctcgtt ctgacagagg gttgcatcac tggcttgcaa taacggcgcc
     2341 agcccccatt cagctattcc atatagcaat tcaggctcaa tagccgatcg attagcggtg
     2401 ccaattagcc cttcacacca gcgctgccag cattgttctg caatccacac cctacccagc
     2461 tcattatgat aatttatggt aaataatgtc ccttgctgta ctggatattg ttgcatactc
     2521 aatgtcagct caccaatggt agcgccttgt gttggaagta tctccaccca cggacgctct
     2581 tcattcgcta ttcttaacat agaatatctc cagggaaatt atatacccca tatgcagcaa
     2641 ctgagactcc agccactgct ttagcgcttt catcgaacgg taaatttcat gatgagggac
     2701 attgattctt aactggatta gccctcctga ctcacagact tcacactcta caccgtcaag
     2761 ataaccgcca ctaacacgat aacgttgcgt gaaaaccacg ttcttattca atgctgcagg
     2821 aggattattc tcaccaatgg gtaatgcctg gtgcatgagt tgttcaaagt ccatacgttc
     2881 cgcctccgcc tcgttatcat cctgataaga ctggcatggc aacccaagac ttccctcaac
     2941 tttggtaata cgcatcgctt aataccatag taattttttc tttctttttc ataagcgcat
     3001 taaaattctt ctgtaattcg cttcgcctgg agacaagctg ctgatactga ttctctaact
     3061 gctgccgttg cgtcaaaaag ctctgcgcct gagtgaatag tccggccatt tgttgtttct
     3121 tatccaacaa taaatgacaa gataacgtac cttgccagcc cattaattct ttcagtctgg
     3181 tagtcactgc taaagcgcgc gtctggcaaa tctgctgttc agtaataatc gcctgttgct
     3241 gctgatcaag cacggtaagt ttgctgcgta attgcttttc acgccgcgcg attatctcca
     3301 gcaaagtttc catgatcact cggtgagtat ttgatgtaat ttttctatga gtagctcggg
     3361 tccgcatact tcatccttac tttgtcgcaa aaatgtgcaa atatccggat aggtatcaat
     3421 ggctttatcg gtatcagtat caactcctcg ctggtattcc ccaatgcgta ttaacagttc
     3481 aacctcctgg taaagcgcca ggcgccgtcg caatatagcc gccagttgac gatgctcatg
     3541 gctggtaacg actggaaaaa cgcggctgag cgttgccaac acgtcaatgg caggataatg
     3601 ccccctctct gcaagccgcc gggatagcac aatatgtccg tcaagcagtg aacggacttc
     3661 atccgccaac ggctcattca tatcatcgcc ttccaccagg accgtataaa atgcggtaat
     3721 actgcctttt tcccccattc ctgtacgttc taaaagtcgt ggcaatgcac taaatacgcc
     3781 tggcggatat tctccagaaa ctgcggtctc tccggcggcc agagcgattt cccgtgcggc
     3841 cctggcataa cgcgtcagtg agtcggcaag caagacgact cgttttccat tatcgcgaaa
     3901 aaattctgct atcgtggtgg ccacaaacag cgccctcacg cgctctaagg cgggtctgtc
     3961 agaggttgcg acaacaatga cacaacgttt tcgggtctct tcagacagtg taaaatcgat
     4021 gaactcgcgg acttctcgtc cacgttcacc aattaacacc agaacattgc agtctgcgtc
     4081 tggcgcatta cacagcatcg ccagaagcgt gcttttcccc acgccaggag cagaaaaaat
     4141 acccactcgt tgcccttcac cacaggtcgc aacgctatca atagcgcgaa tccccgtcat
     4201 taatggttga gtgataggct gtcgaaccat tgcgggagga ggcattgcat catagtcttt
     4261 ccagcagacg tcgggcagtt cgcagccatc aaggggacga ccaaaaccat caatgactcg
     4321 ccctaataac gcttcgccca cgggaacctg atggcgtcgc cttaaggcca tcacttgctg
     4381 cccgcagtga agcccgatag tactcgtaaa aggagatagc aaagctttgc tgccattaat
     4441 ccccacgact tcagcaagtt cttctccagg ctttatacag cacaactctc ccataaatac
     4501 cccaggcaac cacgcattta acaacgttgc gctgacatct tgaattcggc cccatcgaca
     4561 ataaccatcg gggggcggat atttcagcct cagacgttgc atcaattcat tcttcattgt
     4621 ccgccaactc ctcttcgcta aggtcaatac tttctaccac ttgtataagg ctctcctctc
     4681 ctaattcctg ccatgacaaa atcggtacgt cgaacaaggt ggcttctgta atttttcgca
     4741 agaaacggcg ggtgtcgaca gaagtgacaa tgaataattt ggctgactgc ttcagcgcct
     4801 gctcaataag ttgcaggatc tgcgtcttat gacgagacga cagcgcagta taggtcccca
     4861 ttgccgtctg gcgaatggat tcacgcacga ggttttcaat accttcgccg atccgcaaaa
     4921 tcggcagcgg ttttccttcc ggattaagac gacgcagaat atgacggcga agcgcgatac
     4981 ggacatattc tgtcaacatc aggacatctt tttcgcgtgg cgcccagtca attaatgtgc
     5041 caaaaataag acgtaaatct ctaatagaaa cccgctctga tacaagccgt tgcaaagttt
     5101 cagcgatttt attaatgggt aactggcgct gaagttcttt caccagttca gagtagtttt
     5161 tttccatcgc attcattaga taacgcgttt cctgaacacc aataaactct cccatatgcc
     5221 gaagcaggac acattttaat aaggcagaga tacgttggct gcccgcgaaa acgtccagtc
     5281 caaaaccttg cgccttatga gccatgtctt ttgaaagcca acagatctgc cccattccgt
     5341 tcggtaacgt ctggctgtca cccaccacac tagcgtccgc gcctatcaat aaataatccg
     5401 cctgggcggg aatagataaa ctaaacacgg gttcctgata tagcagtacc gtcaattttt
     5461 cggtgggttc aggcaaaacc tcaatattca cctcagggag agggacgccg gtatcctcaa
     5521 ataaaaacca tctcatggca tcaatatcac gaatcaggtc ggcagaatgt aacgtcgggg
     5581 taagacgtaa gattagagga catgcgccgg gaaccatact atctttttcc ggcgcttcga
     5641 tgccatttgc ggaaaccaca gactttttgc ggcgaatgag gataattggc aatgctaaca
     5701 acgctgaaaa gaaagcgaga gtgataaaag gaaagccagg aattaaagcg aggagcatta
     5761 aaaccacagc ggttaatatg agcgactgag gttgtctggc aatttgagaa ctcaactctg
     5821 tcgccaggtt ctggcgtttc tcacccggaa cacgggtgac aataattccc gcgctaaggg
     5881 aaatcagcag cgatggaatt tgcccacata aaccatctcc gattgacagt acgctataag
     5941 tgtgaacagc ctcactcatc gacatatcat attgtacgat agcgataata ataccgccga
     6001 taatgttcac cagaacaaca ataataccgg caatcgtatc gcctttaaca aatttcattg
     6061 caccgtccat cgcaccgaga aaacggcttt cctgctggac gtgctgtctt aatgtacggg
     6121 catggtctgc atcgataact ccggcacgca aatcgccatc gatactcatt tgtttgcctg
     6181 gcatcccatc aagcgagaaa cgtgcgctaa cttccgccac cctctcgata ccttttgtaa
     6241 tgacaataaa ttgcacaata gtaatgatgg taaatacgac caacccaacg gtgagatttc
     6301 ctcctacgac aaacttaccg aaagcatcca caatattacc ggca
//
LOCUS       DAJVSD010000250         6333 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.250, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000250 DAJVSD010000000
VERSION     DAJVSD010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6333
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.250"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            369..704
                     /gene="eutS"
                     /locus_tag="OQP62_003852"
     CDS             369..704
                     /gene="eutS"
                     /locus_tag="OQP62_003852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutS"
                     /protein_id="HCS1723276.1"
                     /translation="MNKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIM
                     TLTPGETAMIAGDLAMKAADVHIGFLDRFSGALVIYGTVGAVEEALLQTVSGLGRLLN
                     FTLCELTKS"
     gene            717..1196
                     /gene="eutP"
                     /locus_tag="OQP62_003853"
     CDS             717..1196
                     /gene="eutP"
                     /locus_tag="OQP62_003853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization acetate kinase EutP"
                     /protein_id="HCS1723277.1"
                     /translation="MKRIAFVGAVGAGKTTLFNALRGNYSLARKTQAVEFNDHGDIDT
                     PGEYFSHPRWYHALITTLQDVDTLIYVHAANDKESRLPAGLLDVGTRKRHIAVISKTD
                     MPDADVAATRQLLCEIGFREPIFELNGHDPQSVRQLVDYLAALSEQEEEAGEKTYHS"
     gene            1174..1863
                     /gene="eutQ"
                     /locus_tag="OQP62_003854"
     CDS             1174..1863
                     /gene="eutQ"
                     /locus_tag="OQP62_003854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization acetate kinase EutQ"
                     /protein_id="HCS1723278.1"
                     /translation="MKKLITANDIRAAHARGEQAMSVVLRASIITPEAREVAELLGFT
                     ITECDESVPASTSAQACKSESQRIREAIIAQRPEGQFTESLVAQLMEKVLKEKQSLEL
                     GTMQPSFTSVTGKGGVKVIDGSSVKFGRFDGAEPHCVGLTDLVTEQDGSSMAAGFMQW
                     DNAFFPWTLNYDEIDMVLEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFL
                     YVAWPANWQSV"
     gene            1860..2657
                     /gene="eutT"
                     /locus_tag="OQP62_003855"
     CDS             1860..2657
                     /gene="eutT"
                     /locus_tag="OQP62_003855"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization cob(I)yrinic acid
                     a,c-diamide adenosyltransferase EutT"
                     /protein_id="HCS1723279.1"
                     /translation="MNDFITETWLRANHTLSEGSEIHLPADARLTPSARELLESRRLR
                     IKFLDQQGRLFVDDDEQQPVHGLTSSDTHPQACCELCRQPVVKKPDTLTHLTADKMVA
                     KSDPRLGFRAALDSAIALTVWLQIELAEPWQPWLFDIRSRLGNIMRADAIDEPLAAQS
                     IVGLNEDELHRLSHQPLRYLDHDHLVPEASHGRDAALLNLLRTKVRETETLAAQVFIT
                     RSFEVLRPDILQALNRLSSTVYVMMILSVAKHPLTVAQIQQRLGEKP"
     gene            2654..3670
                     /gene="pta"
                     /locus_tag="OQP62_003856"
     CDS             2654..3670
                     /gene="pta"
                     /locus_tag="OQP62_003856"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HCS1723280.1"
                     /translation="MIIERARELAVRAPARVVFPDALDERVLKAAHYLQQCGLARPVL
                     VASPFALRQFALSHRMAMDGIQVIDPHSNLSMRQRFAQRWLARAGEKTPPDAVEKLSD
                     PLMFAAAMVSAGEADVCIAGNLSSTANVLRAGLRVIGLQPGCKTLSSIFLMLPQYAGP
                     ALGFADCSVVPQPTAAQLADIAIASADTWRAITGEEPRVAMLSFSSNGSARHPNVANV
                     QQATEFVRERAPQLLVDGELQFDAAFVPEVAAQKAPDSPLQGRANVMIFPSLEAGNIG
                     YKIAQRLGGYRAVGPLIQGLAAPLHDLSRGCSVQEIIELALVAAVPRQADVSRERSLH
                     TLVE"
     gene            3711..3995
                     /gene="eutM"
                     /locus_tag="OQP62_003857"
                     /pseudo
     CDS             3711..3995
                     /gene="eutM"
                     /locus_tag="OQP62_003857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013365323.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutM"
     gene            4113..4400
                     /gene="eutN"
                     /locus_tag="OQP62_003858"
     CDS             4113..4400
                     /gene="eutN"
                     /locus_tag="OQP62_003858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutN"
                     /protein_id="HCS1723281.1"
                     /translation="MKLAVVTGQIVCTVRHQGLAHDKLLMVEMIDAQGNPDGQCAVAI
                     DSIGAGTGEWVLLVSGSSARQAHRSELSPVDLCVIGIVDEVVAGGKVVFHK"
     gene            4412..5815
                     /locus_tag="OQP62_003859"
     CDS             4412..5815
                     /locus_tag="OQP62_003859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase EutE"
                     /protein_id="HCS1723282.1"
                     /translation="MNQQDIEQVVKAVLLKMKDSSQPASTVHEMGVFASLDDEVAAAK
                     RAQQGLKSVAMRQLAIHAIREAGEKHARELAELAVSETGMGRVDDKFAKNVAQARGTP
                     GVECLSPQVLTGDNGLTLIENAPWGVVASVTPSTNPAATVINNAISLIAAGNSVVFAP
                     HPAAKKVSQRAITLLNQAVVAAGGPENLLVTVANPDIETAQRLFKYPGIGLLVVTGGE
                     AVVDAARKHTNKRLIAAGAGNPPVVVDETADLPRAAQSIVKGASFDNNIICADEKVLI
                     VVDSVADELMRLMEGQHAVKLTAAQAEQLQPVLLKNIDERGKGTVSRDWVGRDAGKIA
                     AAIGLNVPDQTRLLFVETPANHPFAVTEMMMPVLPVVRVANVEDAIALAVQLEGGCHH
                     TAAMHSRNIDNMNQMANAIDTSIFVKNGPCIAGLGLGGEGWTTMTITTPTGEGVTSAR
                     TFVRLRRCVLVDAFRIV"
     gene            5826..>6333
                     /gene="eutJ"
                     /locus_tag="OQP62_003860"
     CDS             5826..>6333
                     /gene="eutJ"
                     /locus_tag="OQP62_003860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutJ"
                     /protein_id="HCS1723283.1"
                     /translation="MAHDEQLWLTPRLQKAAALCNQTPAASDTPLWLGVDLGTCDVVS
                     MVVDGNAQPVAVCLDWADVVRDGIVWDFFGAVTLVRRHLDTLEQQLGCRFTHAATSFP
                     PGTDPRISINVLESAGLEVSHVLDEPTAVADLLALDNAGVVDIGGGTTGIAIVKQGKV
                     TYSADEATG"
BASE COUNT         1383 a         1754 c         1929 g         1267 t
ORIGIN      
        1 tgcgccgctg ggcttcgcca tggtatgaaa ggctcgggtg gggatattct ggaacctatt
       61 gcgttacccc tacttatttc actgaatctg tactatgcac aaatcgagtg atacgcatta
      121 tttttatcaa taatagtaat acaaagaata gccggtgggt atttattgcg gaacaagctt
      181 aaattcagaa tgacgcctga aaatgtgatg caccacgata tttatcgtta acaccttcga
      241 cagaagtccc ttttattttc tttctcttag tgatctacct caccttttac atcaccttgc
      301 cgaattttgt tatttactcc gacaaaaaat tgccacgatg acggcagttt cagtggagac
      361 ggtgagcaat gaataaagaa cgcattattc aggaatttgt gccgggcaaa caggtcacgc
      421 tggcgcatct cattgcgcac cctggtgaag aactggcgaa aaagatcggc gttcccgatg
      481 ctggcgcgat tggcattatg accttaacgc cgggggaaac ggccatgatc gctggcgatt
      541 tagcgatgaa ggctgcggat gtacacatcg gttttctcga cagatttagc ggcgcgctgg
      601 tgatttatgg caccgtcggc gcagtagaag aagcgctatt acagacggtc agcgggctgg
      661 ggcgattatt aaacttcacc ctgtgtgagt taacaaaaag ttaattggtg gcggtaatga
      721 aacgtattgc ttttgtcggc gcggtcggcg ccggaaagac aacgcttttt aacgcgttac
      781 ggggaaatta ttccctcgcc agaaaaacgc aggccgtgga atttaatgat catggcgata
      841 tcgatacgcc gggtgaatat tttagccatc cccgttggta tcacgcctta attaccacgt
      901 tgcaggatgt ggacacgctg atttatgtcc acgcggcaaa cgataaagaa agtcgcttac
      961 ctgccgggtt attggatgtt ggaacccgta aacgacatat cgccgttatc agcaaaacgg
     1021 acatgccgga tgccgacgtc gccgctacgc ggcagttgct ttgcgagatt ggattccggg
     1081 agccgatttt cgagctcaac ggccacgacc cgcaaagcgt gcggcagttg gtggattatc
     1141 tggcggctct cagtgaacag gaggaagagg caggtgaaaa aacttatcac agctaacgat
     1201 attcgtgcgg cccacgcccg cggcgaacag gcgatgtcgg tagtgctgcg cgccagcatt
     1261 attaccccgg aggctcgcga agtggcggaa ctactgggct tcacgattac cgaatgcgac
     1321 gagtccgtcc cggcatccac atcggcgcag gcgtgtaaaa gcgaaagcca gcgcattcgg
     1381 gaagccatca tcgcgcagcg cccggaaggg cagtttactg aaagcctggt ggcgcagttg
     1441 atggaaaaag tgctcaagga aaagcagtcg ctggaactgg ggacgatgca gccgagcttt
     1501 acctccgtca cgggtaaagg cggcgtgaaa gtcattgacg gcagcagcgt gaaatttggc
     1561 cgcttcgacg gcgccgaacc gcactgcgtc ggcttaaccg atctggttac agagcaggat
     1621 ggcagcagca tggccgccgg gtttatgcag tgggacaacg cctttttccc gtggacgctg
     1681 aactacgacg aaatcgacat ggtgctggag ggtgaactgc acgtacgcca tgaaggcgaa
     1741 accatgattg ccaaagccgg agatgtcatg ttcatcccta aaggctccag cattgaattt
     1801 ggcacgccaa cgtccgtgcg ctttctgtac gtcgcctggc ctgcaaactg gcaatccgta
     1861 tgaacgattt catcaccgaa acgtggctca gagcgaatca tacgctcagc gaaggatcgg
     1921 aaatccatct gcccgctgac gcacgactga cgccctcggc ccgggaactg ctggaaagtc
     1981 gtcgcctgcg cattaagttt ctggatcagc aaggccggct gtttgtcgat gatgacgaac
     2041 agcagccggt acatggctta accagtagcg atacgcaccc acaggcctgc tgtgaactgt
     2101 gccgccagcc ggtggtgaaa aagcccgata cgctgaccca tctgacggcg gacaaaatgg
     2161 tcgccaaaag cgacccgcgc ctcggctttc gcgccgcgct cgacagcgcc atcgcgctga
     2221 ccgtgtggct acaaatcgaa ctggcggaac cctggcagcc gtggcttttc gatatccgct
     2281 cgcggctggg caacattatg cgcgccgacg ctatagatga accgctggcg gcgcagtcta
     2341 tcgtcgggct gaacgaggat gagctgcatc ggctttccca ccagccgctg cgctatctcg
     2401 accacgatca cctggtgccg gaggccagcc acggtcgcga tgcggcgctg cttaatctgc
     2461 tgcgaaccaa agtccgcgaa acggaaaccc tcgccgcaca agtgtttatt acccgtagtt
     2521 ttgaggtctt gcgcccggac attttacagg cgctaaaccg tctctccagc acggtttacg
     2581 tgatgatgat tttgagcgtg gcgaaacatc cgctgacggt cgcccaaatt caacaacggt
     2641 tgggagagaa gccatgatca ttgaacgcgc ccgcgaactg gcggtacgcg cccccgccag
     2701 agtcgtcttt cccgatgcgc tggacgaacg cgtgctgaaa gcggcgcatt acctgcaaca
     2761 gtgcggtctg gctcgccccg ttctggtcgc cagtccgttt gcgctgcgtc agtttgccct
     2821 gagtcatcgt atggcgatgg atggcattca ggtcatcgac ccacacagca acctgagtat
     2881 gcgccagcgt tttgcgcaac gctggcttgc ccgtgccgga gaaaaaacgc cgccggacgc
     2941 agtggaaaag cttagcgacc cgctaatgtt cgctgccgcc atggtgagcg ccggtgaggc
     3001 tgatgtgtgt atcgcaggca acctgtcgtc aacggcgaac gtgctgcgcg cagggctgcg
     3061 ggtgattggc ctgcaacccg ggtgcaaaac attatcgtct attttcctga tgctgccgca
     3121 gtatgccggc ccggcattag ggttcgccga ttgcagcgta gtgccgcagc cgacggcggc
     3181 gcagctggcg gatatcgcta tcgccagcgc cgacacctgg cgggccatta ccggcgaaga
     3241 gccgcgcgtg gcgatgctgt cattttcaag caacggcagc gcccgtcacc ccaatgttgc
     3301 caacgtgcag caggcgacag agttcgttcg cgaacgtgcg ccgcaactgc ttgtggacgg
     3361 tgaattgcag tttgacgccg ctttcgtacc ggaggtcgcc gcgcaaaaag cgcctgacag
     3421 cccgctgcaa ggccgcgcca acgtgatgat tttcccgtcg ctggaggcgg gcaatattgg
     3481 ctacaaaatc gctcagcgtc tgggaggcta tcgcgctgtt gggccgctaa ttcaggggct
     3541 tgccgcgccg cttcacgacc tctcccgagg ctgtagcgtg caggaaatta tcgaactggc
     3601 gttggtggca gccgtgccgc gccaggctga cgtgagccgc gaacgcagct tacacacact
     3661 ggttgaatga acggtcccgt tctggacccc tttaatgaga ggaaaacacg atggaagcat
     3721 taggaatgat tgaaacccgg ggcctagttg cgctgattga ggcctcagat gcgatggtaa
     3781 aagccgcacg cgtgaagctg gtcggtgtga agcagattgg cggtggcctg tgtacggcca
     3841 tggtgcgtgg cgacgtggcg gcgtgcaaag ccgcaaccga tgctggcgcc gctgcggcgc
     3901 agcgcattgg cgagctggtc tctgtacacg tgattccacg cccgcacggc gatctggaag
     3961 aagtgttccc gatcagcttc aaaggcgcag caacatttga tggtaggccg gataagacgc
     4021 gcagcgtcgc catccggcat gaatgcgcgc cattgcctga tagtgcgcag attcaaggcc
     4081 tacgacccaa cgggcaatcc atggaggcgg atatgaaact ggcagtcgtc acaggacaaa
     4141 tcgtatgtac cgtccgccat cagggactgg cgcatgacaa attgctgatg gtggaaatga
     4201 tcgatgccca gggcaacccc gacgggcagt gtgccgtcgc tatcgacagt atcggggcgg
     4261 gaaccggaga gtgggtactg ctggtcagcg gcagttccgc gcgccaggcg catcgcagcg
     4321 aattatcacc ggtcgatctg tgcgtcattg gcatcgtcga tgaagtggtg gctggcggga
     4381 aagtggtttt ccataaatag gactgaacat catgaatcaa caggatattg aacaggtggt
     4441 gaaagcggtg ctgctgaaaa tgaaagacag cagccagccg gccagcactg ttcatgagat
     4501 gggcgttttt gcctccctgg atgacgaagt ggcggcagca aaacgggccc agcaggggct
     4561 gaagagcgtg gcgatgcgcc agcttgccat tcatgccatt cgcgaggcgg gcgaaaaaca
     4621 cgcccgagaa ttagcggaac ttgccgtcag cgaaaccggc atgggacgcg ttgacgataa
     4681 atttgccaaa aacgtggcgc aggcgcgcgg cacgccgggc gtcgagtgtt tatctccgca
     4741 ggtgctgacc ggcgataacg gcctgacatt gattgaaaat gcgccgtggg gcgtggtggc
     4801 ctcggtcacg ccgtccacca atccggcggc gacggtgatc aataacgcca tcagcctgat
     4861 tgccgcaggc aacagcgtcg tgtttgcccc gcatccggcg gcgaaaaagg tctctcagcg
     4921 ggcaatcacc ctcctcaatc aggcggtggt cgccgccggc ggcccggaaa atctgctggt
     4981 caccgtggcg aacccggata tcgaaaccgc ccagcggctg ttcaagtacc ccggtattgg
     5041 cctgctggtg gtgaccggcg gcgaagcggt ggtggacgcg gcgcgcaaac atactaataa
     5101 acgcctgatc gccgccggtg ccggcaatcc cccggtggtg gtggatgaga ccgccgacct
     5161 gccgcgcgcc gcacaatcca tcgtcaaagg cgcgtcgttt gataacaaca tcatctgtgc
     5221 cgacgaaaaa gtgctgattg tggtggatag cgtcgccgac gagctgatgc gtctgatgga
     5281 aggtcagcac gcggtgaaac tgactgccgc tcaggccgaa cagctccagc cggtgctgct
     5341 gaagaatatt gatgagcgcg gcaaaggcac cgtcagccgt gactgggtcg gtcgtgacgc
     5401 gggcaaaatc gccgcagcca ttggcctgaa cgtcccggat caaacgcgcc tgctatttgt
     5461 ggaaacgcca gctaaccatc cgtttgccgt cactgaaatg atgatgccgg tactgccggt
     5521 ggtgcgggtc gccaacgtcg aagatgccat cgccctggcg gtacaacttg aaggcggttg
     5581 ccaccatacg gcggcgatgc actcgcgcaa tatcgacaac atgaaccaga tggcgaacgc
     5641 catcgacacc agcattttcg tcaaaaacgg gccgtgcatt gccgggcttg gattgggcgg
     5701 agaaggctgg accaccatga ctatcactac gccaaccggc gaaggggtga ccagcgcgcg
     5761 tacctttgtg cggctgcgtc gatgcgtgct ggtggatgcg tttcgcattg tataagggat
     5821 gactcatggc gcacgacgaa caactctggc tcaccccaag actgcaaaaa gcggcggccc
     5881 tgtgtaacca gacgcccgcc gccagcgaca caccgctgtg gctgggcgtc gatttgggca
     5941 cctgcgacgt ggtgtcgatg gtggtcgacg gcaacgccca gccggtggcg gtgtgccttg
     6001 actgggccga cgttgtgcgt gacggcatcg tctgggattt cttcggcgcc gtcaccctcg
     6061 tgcgccgcca tctcgacacc cttgaacagc agctcggctg ccgctttacc cacgcggcga
     6121 cctcgttccc accgggcacc gacccgcgta tttcgatcaa cgtgctggag tctgctgggt
     6181 tagaagtcag ccacgtactg gatgaaccga cggcggtggc ggatctgctg gcgcttgata
     6241 atgcaggcgt ggtggatatt ggcggcggca ctaccggcat tgccatcgtc aaacagggca
     6301 aggtgactta ctccgccgat gaagccactg gcg
//
LOCUS       DAJVSD010000251         6204 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.251, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000251 DAJVSD010000000
VERSION     DAJVSD010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6204)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6204)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6204
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.251"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..283
                     /gene="sctE"
                     /locus_tag="OQP62_003861"
     CDS             <1..283
                     /gene="sctE"
                     /locus_tag="OQP62_003861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type III secretion system translocon subunit
                     SctE"
                     /protein_id="HCS1723284.1"
                     /translation="KGLQAIRCATEGANQMNTGMVNTEKAKLEKKIEQLITQQRFLDF
                     IMQQTDDQKKIEQKRLEGLYKGSGAALRGVLDTIDHYSSVQARIAGWRA"
     gene            299..886
                     /gene="sseD"
                     /locus_tag="OQP62_003862"
     CDS             299..886
                     /gene="sseD"
                     /locus_tag="OQP62_003862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-2 type III secretion system translocon
                     protein SseD"
                     /protein_id="HCS1723285.1"
                     /translation="MEASNVALVLPAPSLLTPSSTPSPSGEGMGTESMLLLFDDIWMK
                     LMELAKKLRDIMRSYNVEKQRLSWELQVNVLQTQMKTIDEAFRASMITAGGAMLSGVL
                     TIGLGAVGGETGLIAGQAVGHTAGGVMGLGSGVAQRQSDQDKAIADLQQNGAQSYNKS
                     LTDIMEKATEIMQQIIGVGSSLVTVLAEILRALTR"
     gene            889..1305
                     /gene="sseE"
                     /locus_tag="OQP62_003863"
     CDS             889..1305
                     /gene="sseE"
                     /locus_tag="OQP62_003863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LcrR family type III secretion system chaperone
                     SseE"
                     /protein_id="HCS1723286.1"
                     /translation="MVQEIEQWLRRHQVFTEPAYLGETAILLGQQFILSPYLVIYRIE
                     AKEMIICEFRRLTPGQPRPQQLFHLLGLLRGIFVHHPQLTCLKMLIITDVLDEKKAML
                     RRKLLRILTVMGATFTQLDGDNWTILSAEHLIQRRF"
     gene            1357..1791
                     /gene="sscB"
                     /locus_tag="OQP62_003864"
     CDS             1357..1791
                     /gene="sscB"
                     /locus_tag="OQP62_003864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SycD/LcrH family type III secretion system
                     chaperone SscB"
                     /protein_id="HCS1723287.1"
                     /translation="MMMKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAV
                     IDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCL
                     KMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQKMVDTLIA"
     gene            1807..2589
                     /gene="sseF"
                     /locus_tag="OQP62_003865"
     CDS             1807..2589
                     /gene="sseF"
                     /locus_tag="OQP62_003865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion systems effector SseF"
                     /protein_id="HCS1723288.1"
                     /translation="MKIHIPSAASNIVDGNSPPSGIQAKEASFPPPEIPAPGTPTVPV
                     VLTPEQIRQQRDYAIHFMQYTIRALGATVVFGLSVAAAVISGGAGLPIAILAGAALVI
                     AIGDACCAYHNYQLICQQKAPLQTASDSVALVVSALALKCGASLNCANTLANCLSLLI
                     RSGIAISMLVLPLQFPLPAAENIAASLDMGSVITSVSLTAIGAVLDYCLARPSGDDQE
                     NSVDELHADPSVLLAEQMALLCQSATTPALMDSSGHTSRGEP"
     gene            2586..3275
                     /gene="sseG"
                     /locus_tag="OQP62_003866"
     CDS             2586..3275
                     /gene="sseG"
                     /locus_tag="OQP62_003866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460370.1"
                     /note="SseG, from Salmonella pathogenicity island 2, is a
                     type III secretion system (T3SS) effector protein; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pathogenicity island 2 effector protein SseG"
                     /protein_id="HCS1723289.1"
                     /translation="MKPVSPNAQVGGQRPVNAPEESPPCPSLPHPETNMESGRIGPQQ
                     GKERLLAGLAKRVIECFPKEIFSWQTVILGGQILCCSAGIALTVLSGGGAPLVALAGI
                     GLAIAIADVACLIYHHKHHLPMAHDSIGNAVFYIANCFANQRKSMAIAKAVSLGGRLA
                     LTATVVTHSYWSGSLGLQPHLLEHLNDLTYGLMSFTRFGMDGMAMTGMQVSSPLYRLL
                     AQVTPEQRAPE"
     gene            3369..3584
                     /gene="ssaG"
                     /locus_tag="OQP62_003867"
     CDS             3369..3584
                     /gene="ssaG"
                     /locus_tag="OQP62_003867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system needle filament
                     protein SsaG"
                     /protein_id="HCS1723290.1"
                     /translation="MDIAQLVDMLSHMAHQAGQAINDKMNGNDLLNPESMIKAQFALQ
                     QYSTFINYESSLIKMIKDMLSGIIAKI"
     gene            3562..3852
                     /locus_tag="OQP62_003868"
     CDS             3562..3852
                     /locus_tag="OQP62_003868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001531123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EscG/YscG/SsaH family type III secretion system
                     needle protein co-chaperone"
                     /protein_id="HCS1723291.1"
                     /translation="MESLLKSEVISDDVRRLLLEIMFAGVNHSLISQVHAMLPALTVI
                     VPDKKLQLVCLALLLAGLNEPLKAAKILSDIDLPEAMALRMLFPAPNEGFEN"
     gene            3864..4112
                     /gene="ssaI"
                     /locus_tag="OQP62_003869"
     CDS             3864..4112
                     /gene="ssaI"
                     /locus_tag="OQP62_003869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SctI family type III secretion system inner rod
                     subunit SsaI"
                     /protein_id="HCS1723292.1"
                     /translation="MSIVPVSTQSYVKSFAEPSQEQINFFKQLLKDEASTSNASALLP
                     QVMLTRQMDYMQLTVGVDYLARISGAASQALNKLDSMT"
     gene            4109..4858
                     /gene="ssaJ"
                     /locus_tag="OQP62_003870"
     CDS             4109..4858
                     /gene="ssaJ"
                     /locus_tag="OQP62_003870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-2 type III secretion system apparatus
                     lipoprotein SsaJ"
                     /protein_id="HCS1723293.1"
                     /translation="MKVHRIIFLTVLTFFLTACDVDLYRSLPEDEANQMLALLMQHHI
                     DAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFTTADKMFPANQLVVSPQEEQQ
                     KINFLKEQRIEGMLSQMEGVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQVNMEAF
                     RVKIKDLIEMSIPGLQYSKISILMQPAEFRMVPDVPARQTFWIMDVINANKGKVVKWL
                     MKYPYQLMLSLTGLLLGVGILIGYFCLRRRF"
     gene            4876..5424
                     /locus_tag="OQP62_003871"
     CDS             4876..5424
                     /locus_tag="OQP62_003871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoplasmic protein"
                     /protein_id="HCS1723294.1"
                     /translation="MLQLYRYFWQPARYAVPEWLDKLGFHLSNCWRYGDRPKLDRLLD
                     RALNRLRGSSVIPACLNDRQKRQIRLAPRISAFAFGLGLFKLRCSDYFMLPEYRQLLL
                     QWFSEDEIWQLYGWLGQRDGKLLPPQVMQQTALQIGTAILNREAHDDAVLHALLVLLP
                     PPQRILWPKTSLTEIIFMEHLL"
     gene            5421..6095
                     /gene="ssaK"
                     /locus_tag="OQP62_003872"
     CDS             5421..6095
                     /gene="ssaK"
                     /locus_tag="OQP62_003872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-2 type III secretion system apparatus
                     protein SsaK"
                     /protein_id="HCS1723295.1"
                     /translation="MSFTSLPLTEINHKLPARNIIESQWITLQLTLFAQEQQAKRVSH
                     AIVSSAYRKAEKIIRDAYRYQREQKVEQQQEIAWLRKNTLEKMEVEWLEQHVKHLQED
                     ENQFRSLVDHAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIH
                     PEKEALMRETFGKRFTLIIEPGFSPDQAELSSTRYAVEFSLSRHFNALLKWLRNGEDK
                     RGSDEY"
     gene            6061..>6204
                     /locus_tag="OQP62_003873"
     CDS             6061..>6204
                     /locus_tag="OQP62_003873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460377.1"
                     /note="Salmonella pathogenicity island 2 protein; member
                     of a type III secretion system involved in the survival
                     and replication of Salmonella in a host cell; may be
                     involved in regulation; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SepL/TyeA/HrpJ family type III secretion system
                     gatekeeper"
                     /protein_id="HCS1723296.1"
                     /translation="MVKIKEVAMNIKINEIKMTPPTAFTPGLVIEEQEVISPSMLALH
                     ELQE"
BASE COUNT         1718 a         1273 c         1523 g         1690 t
ORIGIN      
        1 taaaggctta caggctatca gatgtgcaac cgagggtgcc aatcagatga atactggcat
       61 ggttaacaca gaaaaagcga agcttgaaaa gaaaatagag caattaataa ctcagcaacg
      121 gtttctggat ttcataatgc aacaaacgga tgaccaaaaa aagatagaac aaaaacgctt
      181 agaggggctt tataaaggta gcggtgccgc gcttagaggt gtattagata ccattgatca
      241 ctatagtagc gttcaggcga gaatagctgg ctggcgcgct taatctgagg ataaaaatat
      301 ggaagcgagt aacgtagcac tggtattacc agcgccttcc ttgttaacgc cttcttccac
      361 tccatctccc tccggggagg gaatgggtac tgaatcaatg cttctgttat ttgatgatat
      421 ctggatgaag ctaatggagc ttgccaaaaa gctgcgcgat atcatgcgca gctataacgt
      481 agaaaaacaa cgactgtcct gggaactgca agtcaatgtt ttgcagacgc aaatgaaaac
      541 aattgatgaa gcgtttagag catcaatgat tactgcgggt ggcgccatgt tgtcgggagt
      601 gctgacgata ggattagggg ctgtaggcgg ggaaaccggt cttatagcgg gtcaagccgt
      661 aggacacacc gctgggggag tcatgggcct ggggtccggt gtagcgcaac gtcaaagtga
      721 tcaagataaa gcgattgccg acctgcaaca aaatggggca caatcttata ataaatccct
      781 gacggacatt atggagaaag caactgaaat tatgcagcaa atcatcggcg tggggtcgtc
      841 actggttacg gttcttgctg aaatactccg ggcattaacg aggtaaatat ggtgcaagaa
      901 atagagcaat ggttgcgtcg gcatcaggtg tttactgagc ctgcatattt aggggagacc
      961 gccatattac ttgggcagca gtttatatta tcgccttacc tggtgatcta tcgtattgag
     1021 gcaaaagaaa tgattatttg tgagttcagg cgcctgacgc ccgggcaacc tcgaccacag
     1081 caattgtttc acttactggg acttttacgc gggatatttg tgcatcaccc gcagttaaca
     1141 tgtttaaaga tgttgataat caccgacgtt ctggatgaaa aaaaagctat gctacgcagg
     1201 aaattattgc gcatcctgac agtaatggga gcgaccttta cacagcttga tggcgataac
     1261 tggacaattt tatccgccga gcatcttatc cagcgacgtt tttaaatgac cttcctggcg
     1321 taaatcatta tcacgtgaaa ataacaatca ataggtatga tgatgaaaga agatcagaaa
     1381 aataaaatac ccgaagacat tctgaaacag ctattatccg ttgatccgga aaccgtttat
     1441 gccagtggtt acgcctcatg gcaggagggg gattattcgc gcgccgtaat cgattttagc
     1501 tggctggtga tggcccagcc atggagttgg cgtgcccata ttgcattggc tggcacctgg
     1561 atgatgctta aagaatacac gacggccatt aatttctatg gacatgcctt gatgctggat
     1621 gccagccatc cagaaccggt ttaccaaacg ggcgtctgtc tcaaaatgat gggggaaccc
     1681 gggttggcga gagaggcttt tcaaaccgca atcaagatga gctatgcgga tgcctcatgg
     1741 agtgagattc gccagaatgc gcaaaaaatg gttgatactc ttattgctta aataacagaa
     1801 cgaaatatga aaattcatat tccgtcagcg gcaagcaata tagtcgatgg taatagtcct
     1861 ccttccggta tacaagcgaa ggaggcatcg tttcctcccc ctgaaattcc agcccctggc
     1921 acccctacag ttcctgtggt gcttacgcct gaacaaataa ggcagcagag ggattatgct
     1981 atacatttta tgcaatacac gattcgtgcg ctgggggcga cagtcgtgtt tggattatcg
     2041 gttgctgcag cggtaatttc tggcggagca ggattaccca ttgctattct tgcgggggcg
     2101 gcgctcgtga ttgctattgg ggatgcttgc tgtgcgtatc ataattatca attgatatgt
     2161 cagcaaaagg cgccgttaca aaccgccagt gatagcgttg ctcttgtggt cagtgcgctg
     2221 gccttaaaat gcggggcaag tcttaactgc gctaacaccc ttgctaattg tctttcttta
     2281 ttaatacgtt caggaatcgc tatttctatg ttggttttac ccctacagtt tccactgccc
     2341 gcggctgaaa atatagcggc ctctttggac atggggagtg taattacctc cgttagcctg
     2401 acggcgatag gtgcggtact ggattattgc cttgcccgcc cctctggcga cgatcaggaa
     2461 aattctgttg atgaacttca tgccgatccc agtgtgttat tggcggaaca aatggcattg
     2521 ctctgtcaat ctgctactac acctgcatta atggacagtt ctggtcatac atctcgggga
     2581 gaaccatgaa acctgttagc ccaaatgctc aggtcggagg gcaacgtcct gttaacgcgc
     2641 ctgaggaatc acctccatgt ccctcattgc cacatccgga aaccaatatg gagagtggta
     2701 gaattggacc tcaacaagga aaagagcggt tattggccgg acttgcgaaa cgagtgatag
     2761 agtgttttcc aaaagaaatt tttagttggc aaacggtcat tttgggcgga cagattttat
     2821 gctgttccgc tggaatagca ttaacagtgc taagtggtgg aggcgcaccg ctcgtagccc
     2881 tggcaggaat tggccttgct attgccatcg cggatgtcgc ctgtcttatc taccatcata
     2941 aacatcattt gcctatggct cacgacagta taggcaatgc cgttttttat attgctaatt
     3001 gtttcgccaa tcaacgcaaa agtatggcga ttgctaaagc cgtctccctg ggcggtagat
     3061 tagccttaac cgcgacggta gtgacgcatt catactggag tgggagtttg ggactacagc
     3121 ctcacttatt agagcatctt aatgatctta cctacggact aatgagtttt actcgcttcg
     3181 gtatggatgg gatggcaatg accggtatgc aggtcagcag cccattatat cgtttgctgg
     3241 ctcaggtgac gccagaacaa cgtgcgccgg agtaatcgtt ttcaggtata taccggatgt
     3301 tcattgcttt ctaaattttg ctatgttgcc agtatcctta cgatgtattt attttaagga
     3361 aaagcattat ggatattgca caattagtgg atatgctctc ccacatggcg caccaggcag
     3421 gccaggccat taatgacaaa atgaatggta atgatttgct caacccagaa tcgatgatta
     3481 aagcgcaatt tgccttacag cagtattcta catttattaa ttacgaaagt tcactgatca
     3541 aaatgatcaa ggatatgctt agtggaatca ttgctaaaat ctgaagttat tagcgacgat
     3601 gttcgacggt tgctgctgga aatcatgttt gcgggcgtta accatagcct gatttcccag
     3661 gtacatgcga tgttaccagc gctaacggtt attgttccgg ataaaaaatt acagttggta
     3721 tgtttggcat tattgttggc gggtttaaat gagccgttaa aggccgcgaa aattttatcg
     3781 gatattgatt tgccagaggc tatggcgcta cgaatgttat ttcctgcacc aaatgagggg
     3841 tttgaaaatt gaatatttct gatatgagca tagtgcctgt aagcactcaa tcttatgtaa
     3901 agtcctttgc agaaccgagc caggagcaaa ttaatttttt taaacaattg ctgaaagatg
     3961 aagcatccac cagtaacgcc agtgctttat taccgcaggt tatgttgacc agacaaatgg
     4021 attatatgca gttaacggta ggcgtcgatt atcttgccag aatatcaggc gcagcatcgc
     4081 aagcgcttaa taagctggat agcatgacat gaaggttcat cgtataatat ttcttactgt
     4141 ccttacgttc tttcttacgg catgtgatgt ggatctttat cgctcattgc cagaagatga
     4201 ggcgaatcaa atgctggcat tacttatgca gcatcatatc gatgcggaaa aaaaacagga
     4261 agaggacggt gttaccttac gtgtcgagca gtcgcagttt attaatgcgg ttgagctact
     4321 tagacttaac ggttatccgc atcggcagtt tacaacggcg gataagatgt ttccggctaa
     4381 tcagttagtg gtatcacccc aggaagaaca gcagaagatt aattttttaa aagaacaaag
     4441 aattgaagga atgctgagtc agatggaggg cgtgattaat gcaaaagtga ccattgcgct
     4501 accgacttat gatgagggaa gtaacgcttc tccgagctca gttgccgtat ttataaaata
     4561 ttcacctcag gtcaacatgg aggcctttcg ggtaaaaatt aaggatttaa tagagatgtc
     4621 aatccctggg ttgcaataca gtaagattag tatcttgatg cagcctgctg aattcagaat
     4681 ggtacctgac gtacccgcga gacaaacatt ctggattatg gacgttatca acgccaataa
     4741 agggaaggtg gtgaagtggt tgatgaaata cccttatcag ttgatgttat cgttgacagg
     4801 actgttatta ggagtgggca tcctgatcgg ctatttttgc ctgagacgcc gtttttgagc
     4861 cgacctgatc ccgaagtgtt gcaactttat cgttatttct ggcaacctgc tcgttacgct
     4921 gtaccggaat ggctggataa gctgggcttt catctttcaa actgctggcg ttatggcgat
     4981 cggcccaaat tggatcgtct tcttgacaga gcgttaaata gactaagggg aagctctgtt
     5041 attccagcct gtttaaatga caggcaaaaa cgacagattc gtcttgcgcc gcgtatatcg
     5101 gcatttgcct ttggactggg attattcaaa ctcaggtgta gtgactattt tatgctacca
     5161 gagtatcggc aattgcttct acagtggttt agcgaggatg agatctggca gctatatggt
     5221 tggttggggc aaagagatgg caaattactt cctccgcaag tgatgcaaca aactgcattg
     5281 cagatcggta ccgccattct taatcgggaa gcgcatgacg atgcggtttt acatgcgcta
     5341 ttagtattat taccccctcc gcagcgtata ctttggccga agacttctct taccgagatt
     5401 atcttcatgg agcatttgct atgagtttta cttcacttcc tctgacggaa attaaccata
     5461 agctacccgc tcgaaatatt attgagtcac agtggataac attacaatta actttatttg
     5521 cacaagagca acaagctaag agagtttcac atgctattgt gagctccgct taccgtaagg
     5581 ctgaaaaaat catccgagac gcctatcgtt atcagcgtga acagaaagtt gagcagcaac
     5641 aagaaatagc gtggttgcgt aaaaatacgc tggaaaaaat ggaagtagaa tggctggaac
     5701 aacatgtaaa acatttacaa gaagatgaaa atcaatttcg ttcattggtc gatcacgccg
     5761 cgcatcatat taaaaatagt atagaacagg ttctgttggc ctggttcgac caacagtcgg
     5821 tagacagtgt tatgtgccat cgtctggcac gccaggccac ggctatggcg gaagagggag
     5881 cgctttattt gcgtattcat cctgaaaaag aggcattgat gcgtgaaact tttggcaagc
     5941 ggtttacgct gattatcgag cctggtttct ctcccgatca ggctgaactt tcctcaacac
     6001 gatatgccgt tgagttttca ctttctcgtc atttcaacgc gttactgaaa tggttacgta
     6061 atggtgaaga taaaagaggt agcgatgaat attaaaatta atgagataaa aatgacgccc
     6121 cctacagcat ttacccctgg cctggttata gaggaacaag aggttatttc gccttcaatg
     6181 ttagctctcc atgagttaca ggaa
//
LOCUS       DAJVSD010000252         6181 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.252, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000252 DAJVSD010000000
VERSION     DAJVSD010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6181)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6181)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6181
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.252"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            18..2117
                     /locus_tag="OQP62_003874"
     CDS             18..2117
                     /locus_tag="OQP62_003874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitinase"
                     /protein_id="HCS1723297.1"
                     /translation="MATSKLIQGDTITETTHAANGFDPATSDDKISYTSARVAKPVYN
                     KYKNSTTKPKVFGYYTDWSQYDSRLQGNMSQPGRGCDLTNVSPTAYDKLIFGFVGITG
                     FRKIDKEDRDVVAEAAALCGKVKYEPTFLDPWGDFQSYINLGFETSGWDVDPKTVTQA
                     NAKGMLGALRDMQAKAKAAGHTLALSMSIGGWSMSNGFHETAASDSSRKTFAKGVVKL
                     FKQFPMFSEVDIDWEYPNDEGAGNPFGAEDGANYALLIAELRKQLDSAGLSNVKISIA
                     ASAVTTIFDHAKVKDLLAAGLYGINLMTYDFFGTPWAETLGHHTNRKALEEGGWAVET
                     IVDHLLAEGFSADRINIGYAGYTRNARQVEIESLSPLKGSYNPGSGDTTGSFESGTSE
                     WYDVIYSYLDLENQKGRNGFNVYTDQVADADYLYSPESKLFLSLDTPRTVKAKGEYAA
                     KLGLGGVFTWTIDQDNGVLVNAVREGLGYEIESEVIDMEPFYFEGINVEKDDEQSDSD
                     DAQKVNHAPKAAIELMVVGGSTVQLSGAGSSDEDNDELSFSWGVPSQIDVADKTAEII
                     EVVVPEVSEKTAFQFTLFVRDCYNEPSSQQRFVLTAVPALSQVQPEPEEEEEIIVPVP
                     DEEEETTPAEDDTSADDKTSPYAQWDASTVYGANWGSFEIVSWKGHNYQVKWWSMGNQ
                     PDLNCGVGGAWTDLGAY"
     gene            2209..5205
                     /locus_tag="OQP62_003875"
                     /pseudo
     CDS             2209..5205
                     /locus_tag="OQP62_003875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459024.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chitinase"
     gene            5486..>6181
                     /locus_tag="OQP62_003876"
     CDS             5486..>6181
                     /locus_tag="OQP62_003876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1723298.1"
                     /translation="MKKMMNDAFAKDNNENLLHSFLFSQQAKPHAAIDALFSALLPFG
                     QPFTLGIGDEFYLQANDEHYIVLLESGIVSFCRDDNRLHISSSFAPSVVGMVDSYGAT
                     YNVPARPEHFLLAETVCSGRFVRLPDFIKIADECDLWHDVARCLAYRLMVMSARDREL
                     VGVDSYLKVRALLIEIWAYPQAYRENIIVLNFIQRRTGISRSRTMKILSELKKGGYIH
                     IDNGRLTALGKLPV"
BASE COUNT         1482 a         1526 c         1661 g         1512 t
ORIGIN      
        1 taaaaggaaa tttgaaaatg gctacaagca aactgattca aggcgatacg attactgaaa
       61 ctacccatgc agcgaatggt tttgaccctg caacaagcga tgataaaata agctatactt
      121 ccgctcgtgt tgcgaaaccg gtatacaata aatataaaaa ttccacgact aagccgaagg
      181 tattcggtta ttacaccgac tggtcacagt atgacagccg tctgcaaggc aatatgtccc
      241 aaccgggccg tggttgtgat ttaaccaatg tttcaccgac ggcttatgac aaactgattt
      301 ttggttttgt tggtatcacc ggtttcagaa aaattgataa agaagaccgc gacgtcgtag
      361 cagaagcggc agcgctgtgc ggcaaagtga aatatgagcc gaccttcctc gatccgtggg
      421 gcgatttcca gtcttatatc aacctgggtt ttgaaaccag cggctgggat gttgatccga
      481 aaaccgtgac ccaggctaac gctaaaggta tgctgggcgc gctgcgtgat atgcaggcaa
      541 aagcgaaagc tgcaggtcac acgctggcgc tctccatgag tatcggcggc tggagcatga
      601 gtaacgggtt ccacgaaacc gccgcttctg actcttctcg taaaaccttc gccaaaggcg
      661 tggtgaaact gttcaaacag ttcccgatgt tcagcgaagt ggatattgac tgggaatacc
      721 cgaacgatga aggggcgggc aacccgtttg gcgcagaaga tggcgctaac tacgcgctgc
      781 tgattgccga actgcgtaaa cagctggatt ccgcgggtct gagcaatgtg aagatctcta
      841 tcgcggcctc cgcggtgacc acgatttttg atcacgctaa agtaaaagat ctgttggctg
      901 ctggcctata cggcatcaac ctgatgacct atgacttctt cggtacgccg tgggcggaaa
      961 cgctgggcca ccacactaac cgcaaagcgc tggaagaggg cggctgggct gtcgaaacca
     1021 tcgttgatca cctgctggcg gaaggtttct ccgctgaccg tatcaacatc ggttatgccg
     1081 gctatacccg taacgctcgt caggtagaaa ttgaatccct gtcgccgctg aaaggttctt
     1141 acaacccagg ttcaggcgat actaccggtt ccttcgaatc cggcaccagc gaatggtatg
     1201 acgtcattta tagctacctg gatctggaaa accagaaagg ccgtaacggt ttcaacgttt
     1261 acaccgacca ggtcgctgac gctgactacc tgtatagccc ggaatccaaa ctgtttttat
     1321 ccctggatac gccgcgtact gtcaaagcaa aaggcgaata tgcagcgaaa ctgggcctgg
     1381 gcggcgtgtt tacctggact atcgatcagg acaacggcgt gctggttaac gccgtgcgtg
     1441 aaggtctggg ttatgaaatc gaatctgaag ttatcgatat ggaaccgttc tacttcgaag
     1501 gtatcaatgt agaaaaagat gacgagcaga gcgatagcga cgacgcgcag aaggtcaacc
     1561 acgcgccgaa agcggcgatt gaactgatgg tcgtaggcgg atcgacggta cagctgtctg
     1621 gcgcaggttc ttctgatgaa gataacgatg agctgtcctt tagctggggc gtgccttctc
     1681 aaatcgatgt ggcagacaaa acggcagaaa tcattgaggt tgtggtaccg gaagttagcg
     1741 aaaaaacagc ctttcagttc accctgtttg tacgcgactg ctacaacgaa ccgtcctctc
     1801 aacagcgctt tgttctgacg gcggtgcctg cgctatctca ggttcaaccg gaaccggaag
     1861 aggaagaaga gattatcgtt cctgtaccgg acgaggaaga agagaccacg ccggctgagg
     1921 atgatacgtc agcagatgac aaaacgtcac cttacgcgca gtgggatgct tctaccgttt
     1981 atggcgcaaa ctggggttct ttcgaaatcg ttagctggaa aggccataac tatcaggtga
     2041 aatggtggtc tatgggcaac cagcctgacc tgaactgtgg tgtcggcggt gcatggaccg
     2101 atcttggcgc ttactaatac acggtattaa gccgatgtat tgggcttcat gattcaagcc
     2161 ccggtttacc ggggcttttc tccaccaggg acagaggaag agcagaccat gaccatttcc
     2221 atccatgcca gcgcatttga cgtcaacagc tggtatcaaa aaatcacctt aaccttcatc
     2281 aatgagagcg gtaatccggt cgatatgaac catgccgcaa tatcattcac ggcttccggg
     2341 cacatcgatc catggggaaa tagcggcggt acgctcaaag ggaacccgcc gcttacgctg
     2401 aatgatagtt cgtatggcac gctggaaact aacaacatca tcattaataa cagcgatgca
     2461 ttacttcttc agccgggcga acgcggaacg ctctctttca gcctcgcggc gacgcaggtg
     2521 ccggtaaaaa tgtccgccgt caccttgacg ctggcgtcat cgtcatccga agacgcagag
     2581 tctgcaaccc catccgatca ggagacgcca gcgatacccg ccgcagacga acaacccgcc
     2641 gaatccgatg tgccggaaaa ggacaatgac cttcaggaac gcggccttac gcttaacgtt
     2701 agcgagttga atgccgcaag ttggtatcaa cacgtcacct ttacgctgac cagcctctac
     2761 gcccaggcgg tagatctcaa tcagcttcaa ctgaatttta cggccagcgc gcaccccgat
     2821 ccctacagtc cgtttcaggg aacaatgctg gggaatcagg ccgtgacgct ggccagcgat
     2881 gggggatggc ccatcgagaa gaataccatc accattaatc atgacggcgc gctgatgctg
     2941 gcggcagggg atatcgccga attacagtgc tatctggccg ccacgcagac gccagttgcc
     3001 atcagcgatt tgaacgcgac gttggcccat gaccctgccc accagggaaa aatttgcgtt
     3061 cactttcctg ccatgacgca gaccgtggcg ctcaaaccgg tgattgagct actgtttcct
     3121 gccggcgaaa cccggcgctt tgtcggtgag tggggagagg ttctgacaat aagcgatctt
     3181 agcgcaggaa cgtatcggct tatcgtaccg gtactggcga atgatgagat gcaaatcgcg
     3241 ccagtcgagt cctcttttac cgttacgctg caatccggag atgccgccgc gcaggtctag
     3301 gtatcttgtt taccgattgt ccattatgcc agcgcgcgtc tgatgattga tgcccctgcg
     3361 cttggtaatg cgaaattgac cgttgaaatc gccgatgcta cgcaagcgga tgagcgtacc
     3421 gtcacgctta tcgccaacca accgcagtta atcacccggc tactggcggg gcatcattat
     3481 acggtcaatc tgcagcctgc gatgattaat aaccgcttta tatcggcacc catacagctt
     3541 acgggtttta tccctgctgc ggcgcaggtt gccgaggttg ctgtcgctta ccaacagtcg
     3601 gcgctcgaca cggcgagctt cgtgacggta gatgccacta tactgggcct gcccgatggc
     3661 gtcgcgccgc agcgttatct gttcagcagc ggtaaatatc aatactcatt aatgctggag
     3721 agcggcagcg atcggcagac gctgtcatta cgctttgcgc ccgggctgta tgatgttcag
     3781 acggacgata ttttcatcga cagtgtgccg tggcgttgtg aacaggccgg gccgctacgc
     3841 ttgttgcaaa aggtcaacca tgtggcgctg gagtttctgc ccggcgtgac gctacaggta
     3901 aaaggttggc ctgattacct tgctcatggc ggcgtgacgg ttaacgcgcc agagacggtt
     3961 tctctttatc gcgatatacc gtttagcgcg ttgtttaaat acgacggttt tgacggcggc
     4021 ggcgatccgg tgccggccgc agaggttgac gtgaacgggg atgtttttct ggattacgcg
     4081 acattaccga tccataaaac cgttgcgctg gtgcgccaga tcgaaaaaga agccgggcgt
     4141 agcgtcatgc cggtaatggt catttatacc gcgaatgcca gcggcggcag cgcgctggtg
     4201 gatttacagg atgcgcaaaa gctacgtaac cattttggta actttattac ccagtgtctg
     4261 gcggcgcagt catacaaaga tgagacgcat cctgtcccgg ccacctttgt gcttaacccg
     4321 gattttctgg gtgcgctaca gcaaggaccg tatggctata ccgtagtacg gcaaaaaaac
     4381 agtgtgccgg tgaatgccca actggcggcg gcgatacaag cattaccggc gatggctggc
     4441 tttatcgcgc cttcgttgcc gacgtttagc gacgatctct acggttatat tcaggcggtg
     4501 aactatcttg ttcgtcagtt tgccccggat gtggcttttg gctggcagac gaatgtctgg
     4561 gcgacaggaa cggcggactg ggtgctgcgc gataccgctg atccggtagc tgaagggcag
     4621 gcgatcgccg gatttattca tgaactgggc gtttatagcg gagaatatgc gccggacttt
     4681 attgcgtttg atgaatttga gcgtgactgt ttcagtcctg atgcgcttgc ccactatggc
     4741 tggaatgcga catgctggct taattacctg gcgatggtaa aacaggtgac gaaagcgctg
     4801 ctgacgcccg ccatgctgtg gcaaattcct ggcggccata tgcctacagt agaagagggc
     4861 gtcagcaaaa tcagcgctgc gcactttgca tccggcggaa ccttttttat gggtgacgcc
     4921 cgcattggca gcgatcctga cacgctctct ttgcagctac tcaatacggc cttaaatagc
     4981 gcgacttacg gcgtcccgac cgtcggcgac tttttacgta aagataaagg gtatgactgg
     5041 ggccagatgc aggcgctgaa cctaccggac tttaacgtct tttcgatctt atggggcggt
     5101 ggttctacta tcagtattac gacaatccat tctaacggtg aagacggcgg ctggctggcg
     5161 gataaaatgg tagagtatta tgctgctcca cgctatttta gataatatca ctgcttattt
     5221 gcattaatct ggcctattag tttgagattc gaaggcgcgt tctttcgaat ctcttttcct
     5281 gcgccccctg acctctcatt ctttatgcgt aattcgttat taattttctg taatcaattt
     5341 gtattaagaa tcgtcttaat cttaaaaata ttgcgtatta gtgcgttgtg aatacagaaa
     5401 tactgcatag cgatgttatt tattattaat ttaagtactt tttgagaggt tatactgtgg
     5461 cgctacattg agtagacaac cgttaatgaa aaaaatgatg aacgacgctt ttgctaaaga
     5521 taataatgag aatttattac actcttttct tttttctcag caggctaaac ctcacgcggc
     5581 gattgatgcc ttattttcgg ccttgttgcc atttggtcaa ccgtttacgc tgggtatcgg
     5641 cgatgagttt tatttacagg ccaatgatga acactacatt gtattactgg agtcaggaat
     5701 tgtttctttc tgtcgtgatg acaaccgact ccatatatct tcatcgtttg cgccatcggt
     5761 cgtgggtatg gttgacagct atggcgctac ctataacgtt cccgcgcgcc cggaacactt
     5821 tttgctcgca gaaacggttt gtagcggtag atttgttcgc ctgccggatt ttataaaaat
     5881 cgccgatgaa tgcgatttgt ggcacgacgt ggcccgttgt ctggcttacc gtctgatggt
     5941 gatgagcgcg cgcgatcgtg aattagtcgg cgtcgattct tacctgaaag ttcgggcgct
     6001 gctgattgaa atctgggctt atccacaggc ctaccgggaa aacattatcg tattgaattt
     6061 tattcaacgg cgtaccggga tatcgcgcag tcggactatg aagattctgt ctgaactaaa
     6121 aaaaggcggg tatatccata ttgataatgg gcggctgacg gcactcggaa aactgccagt
     6181 g
//
LOCUS       DAJVSD010000253         6029 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.253, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000253 DAJVSD010000000
VERSION     DAJVSD010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6029)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6029)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6029
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.253"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            48..539
                     /gene="napF"
                     /locus_tag="OQP62_003877"
     CDS             48..539
                     /gene="napF"
                     /locus_tag="OQP62_003877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapF"
                     /protein_id="HCS1723299.1"
                     /translation="MVDLSRRSMLTGSWRNASNGILPPWARETTYFLAHCLRCDACIQ
                     ACEADILQRGTGGYPSVNFKRGECSFCYACAQACPESLFLPRRTRAWDLIFTLTENCL
                     ARQSVECHRCLDSCEPMAITFRPTLSGIYQPQLDSQACNGCGACVAICPVSAIKAENH
                     HAH"
     gene            529..792
                     /gene="napD"
                     /locus_tag="OQP62_003878"
     CDS             529..792
                     /gene="napD"
                     /locus_tag="OQP62_003878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HCS1723300.1"
                     /translation="MRTNWQVCSLVVQAKSQNIAAIGTQLNTLPGCEVALSDVESGQL
                     IVVAEADQSETLMQTIESVRNVEGVLAVSLVYHQQDEQGEETP"
     gene            789..3275
                     /gene="napA"
                     /locus_tag="OQP62_003879"
     CDS             789..3275
                     /gene="napA"
                     /locus_tag="OQP62_003879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase catalytic subunit NapA"
                     /protein_id="HCS1723301.1"
                     /translation="MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQQEAIKWDKA
                     PCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPML
                     RMKDGSYHKDGEFTPVSWEQAFDVMEEKFKTALKEKGPEAIGMFGSGQWTIWEGYAAA
                     KLFKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGSNMAE
                     MHPILWSRITNRRLSDPNVKVAVLSTFQHRSFELADNGIVFTPQSDLVILNYIANYII
                     QNNAVNQDFFTKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFDEYKAFVA
                     EYTLDKTAEMTGVPKDQLEQLAQLYADPNKRVISYWTMGFNQHTRGVWANNLVYNLHL
                     LTGKISQPGCGPFSLTGQPSACGTAREVGTFSHRLPADMVVTNEKHRDICEKHWQIPA
                     GTIPAKVGLHAVAQDRALKDGKLNVYWVMCNNNMQAGPNINEDRMPGWRDPRNFIIVS
                     DPYPTVSALSADLILPTAMWVEKEGAYGNAERRTQFWRQQIKAPGEAKSDLWQLVQFS
                     RRFKTEEVWPEALLAQKPELRGKTLYDVLFATPAVSKFPLSELKEDQLNDESRELGFY
                     LQKGLFEEYAWFGRGHGHDLAPFDDYHNARGLRWPVVEGKETQWRYSEGNDPYVKAGE
                     GYKFYGKPDGKAVIFALPFEPAAESPDNEYDLWLSTGRVLEHWHTGSMTRRVPELHRA
                     FPEAVVFIHPLDAKARDLRRGDKVKVSSRRGEVISIVETRGRNRPPQGLVYMPFFDAA
                     QLVNNLTLDATDPLSKETDFKKCAVKLAKV"
     gene            3282..3977
                     /gene="napG"
                     /locus_tag="OQP62_003880"
     CDS             3282..3977
                     /gene="napG"
                     /locus_tag="OQP62_003880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HCS1723302.1"
                     /translation="MSRTAKPQNGRRRFLRDVVRTAGGLAAVGVALGLQQQTARATGV
                     RLRPPGALNENVFASACVRCGQCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMC
                     EDIPCAKVCPSGALNKDIASIDDSRMGLAVLLDQENCLNFQGLRCDVCYRECPKIDEA
                     ITLELDRNMRTGKHARFLPTVHSDACTGCGKCEKVCVLEQPAIKVLPLSLAKGELGHH
                     YRFGWLEGKDGKS"
     gene            3964..4833
                     /gene="napH"
                     /locus_tag="OQP62_003881"
     CDS             3964..4833
                     /gene="napH"
                     /locus_tag="OQP62_003881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HCS1723303.1"
                     /translation="MANRKRDAGREARAKKGWWRSHRWLVLRRISQFMVLGMFLSGPW
                     LGFWVLHGNYSSSLLFDTLPLTDPLITLESLASGHLPATVALTGAVIIAVLYALAGKR
                     LFCSWVCPLNPVTDLANWMRRKFDLNQSATIPRHIRYVLLVVVLIGSALTGTLLWEWI
                     NPVSLLGRSLIMGFSSGALLIIALFLFDLLVVEHGWCGHICPMGALYGVLGSKGVVTV
                     TAKKREKCNRCMDCFHVCPEPHVLRAPVLDEQSPAQVTHRDCMTCGRCVDVCSEDVFT
                     ITIHNIIRDASRR"
     gene            4949..5398
                     /gene="napB"
                     /locus_tag="OQP62_003882"
     CDS             4949..5398
                     /gene="napB"
                     /locus_tag="OQP62_003882"
                     /EC_number="1.9.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HCS1723304.1"
                     /translation="MKSHDLMKALCQWMATLALVVSGAVWAANGVDLSQSPEVSGTQE
                     GAIRMPKEQERMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISP
                     THFMDSDGKVSGNVAPRRYFCLQCHVPQSDTAPIIDNTFTPSQGYGK"
     gene            5408..6010
                     /gene="napC"
                     /locus_tag="OQP62_003883"
     CDS             5408..6010
                     /gene="napC"
                     /locus_tag="OQP62_003883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type protein NapC"
                     /protein_id="HCS1723305.1"
                     /translation="MENSNRKLGWIKRVWRWWRSPSRLALGTLLLIGFIGGVIFWGGF
                     NTGMEKANTEEFCISCHEMRNTVYEEYMETVHYNNRSGVRATCPDCHVPHEWGPKMIR
                     KIKASKELYAKVFGLIDTPQKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFDFMDLTA
                     QKGVAAKMHDQAVKDGQTCIDCHKGIAHKLPDMRDVKPGF"
BASE COUNT         1346 a         1558 c         1834 g         1291 t
ORIGIN      
        1 tggcattcac tccctatgga agcgtgtcgt tatggaaggg cgatatcatg gttgatttat
       61 cccgtcgaag catgttgacc ggcagttggc gcaacgccag caatgggatt cttccgccgt
      121 gggccagaga aacgacctat tttctcgcac attgtctgcg ttgcgacgcc tgcatccagg
      181 cgtgtgaggc cgacatcctg cagcgaggga cggggggata tccgagcgta aatttcaaac
      241 ggggcgagtg cagcttttgt tatgcctgtg cgcaggcctg tcccgaatct ctctttcttc
      301 cgcgccgcac cagggcctgg gatctgattt ttacactcac ggaaaactgc ctcgccaggc
      361 agtcggttga atgccatcgt tgcctggaca gttgtgaacc tatggccatt acctttcgtc
      421 ccacgttatc cggtatttac cagccgcagc ttgactcgca ggcctgtaac ggatgcgggg
      481 cgtgtgtggc tatctgtccc gtgtcagcca tcaaagcgga gaaccaccat gcgcactaac
      541 tggcaggtct gtagcctggt cgtgcaggcc aaaagtcaga acatcgccgc cattggcaca
      601 cagttgaaca cgttgccggg ttgcgaagtc gcgttaagcg acgttgaaag cgggcaactg
      661 atcgtggtgg cggaagcaga ccagagtgaa acgctgatgc aaacaattga gtcagtacgc
      721 aatgtcgagg gcgtgctggc ggtgtcgctg gtttatcacc agcaggatga gcaaggtgag
      781 gaaacaccat gaaactcagt cgtcgtagct ttatgaaagc taacgccgtt gcggccgctg
      841 cggcggctgc cggtctgagc gtgccgggcg tcgcccgcgc cgttgtcggg cagcaggaag
      901 ctatcaaatg ggataaagcg ccgtgccgtt tttgcggaac gggttgcggt gtgttggtgg
      961 gaacgcagca gggccgtgtg gtcgcctgcc agggcgaccc cgacgcgccg gtcaaccgtg
     1021 gtctgaactg cattaaaggc tacttcctgc ccaaaatcat gtacggtaaa gatcgtctga
     1081 cgcagccgat gctgcgcatg aaagacggca gctatcacaa agacggcgag tttacgccgg
     1141 tgagctggga acaggccttc gatgtgatgg aagagaagtt taaaaccgcc ctgaaagaga
     1201 aaggaccaga agcgatcggc atgtttggat cgggtcaatg gaccatctgg gaaggctatg
     1261 ccgccgcgaa actgttcaag gctggtttcc gctctaacaa catcgacccg aacgcgcgtc
     1321 actgcatggc ctcggcggtg gtgggcttta tgcgcacctt tggcatggat gaaccgatgg
     1381 gctgctacga cgatattgag caggccgatg cgtttgtgct gtgggggtcc aacatggcgg
     1441 agatgcaccc gattttatgg tcgcgcatca ctaaccgccg tttgtccgac ccgaatgtga
     1501 aagttgctgt cctctccacc ttccagcacc gtagctttga gctggcggac aacggtattg
     1561 tctttacccc gcaaagcgat ctggtgatcc ttaactatat cgcgaattac attattcaga
     1621 acaacgcggt aaatcaggat ttcttcacaa agcatgtgaa tctgcgtaaa ggggcgacgg
     1681 atatcggcta cggcttacgc ccgacgcacc cgctggaaaa agcggcgaag aatccgggct
     1741 ccgacgcttc cgagccgatg agcttcgacg agtataaagc cttcgtggcg gaatatacgt
     1801 tggacaagac tgctgaaatg accggcgtgc cgaaagatca actggaacag ttggcacagc
     1861 tctacgccga tccgaataag cgcgtgatct cttactggac gatgggtttt aaccagcata
     1921 cccgcggcgt gtgggcgaat aacctggttt acaacctcca tctgctgacc ggaaaaatct
     1981 cccagcctgg ctgcggtcct ttctcgctga ccggccagcc ttccgcctgc ggtacggcgc
     2041 gtgaagtggg aaccttctca caccgtctgc ccgcagacat ggtcgtgacg aacgaaaaac
     2101 accgtgatat ctgcgaaaaa cactggcaga tccccgctgg cactatcccg gcaaaagtgg
     2161 gtttacatgc ggtggcgcag gatcgcgcgt tgaaagacgg caagctgaac gtctactggg
     2221 taatgtgtaa taacaatatg caggccgggc cgaacatcaa tgaagatcgg atgccgggct
     2281 ggcgcgatcc gcgtaacttt atcattgtct ccgatcctta cccgacggtg agcgcgctgt
     2341 ctgctgatct gatcctgccg accgccatgt gggttgagaa agaaggcgct tacggcaacg
     2401 ccgaacgccg cacgcagttc tggcgtcagc aaattaaagc gccgggcgaa gccaaatccg
     2461 acctctggca actggtgcag ttctcccgtc gttttaaaac cgaggaggtc tggccggagg
     2521 cgttgttggc ccagaagccg gagctgcgcg gcaaaacgct gtatgacgtt ctattcgcca
     2581 cgcctgcggt cagcaaattc ccgctgagcg agctgaaaga agatcagtta aacgatgagt
     2641 ctcgtgagct gggcttctat ctgcaaaaag ggctatttga agaatacgcc tggtttggac
     2701 gtggccacgg tcacgatctg gcgccgttcg acgattacca caacgcgcgc ggtctgcgct
     2761 ggccggtcgt cgaaggcaaa gagacgcaat ggcgttacag cgaaggcaac gacccgtatg
     2821 taaaagcggg ggaagggtac aaattctacg gtaaaccgga tggcaaagcg gtgatcttcg
     2881 cgctgccatt tgaacccgcg gcggagtcgc cggacaacga gtacgatctg tggctttcca
     2941 ccggtcgcgt actggaacac tggcataccg gcagtatgac gcgccgcgtg cctgaattgc
     3001 atcgcgcctt cccggaagcg gtggtcttta ttcacccgct ggatgcgaaa gcgcgcgatc
     3061 tgcgtcgtgg ggataaggtt aaagtgtcgt cccgccgcgg cgaagtgatt tcgattgtcg
     3121 aaacgcgtgg acgtaaccgt ccgccgcagg gactggtgta tatgccgttc ttcgatgccg
     3181 ctcagctagt gaacaacctg acgctggatg cgacggaccc gctctctaaa gagacggact
     3241 tcaagaagtg cgccgttaag ctggcgaagg tgtaacgcgt tatgtcccgt acagcgaaac
     3301 cccaaaatgg ccgccgccgc tttctgcgtg atgttgtgcg cactgcgggc gggctggcgg
     3361 cggttggcgt ggcgctgggc ttgcaacagc aaaccgcgcg cgcaacgggc gtgcggctgc
     3421 gtccgcctgg cgcgctgaat gaaaatgttt tcgccagcgc ctgtgtgcgc tgcgggcagt
     3481 gcgttcaggc gtgtccatac gacacgctaa aactggcgac gctggcctcc gggctatcgg
     3541 caggtacgcc ctatttcgtc gctcgcgaca tcccctgcga aatgtgtgaa gacattccgt
     3601 gcgccaaagt ctgccccagc ggggcgctga ataaagatat cgcctccatt gatgactcgc
     3661 gcatggggct ggcggtgctg ctggatcagg aaaactgcct caactttcag gggctgcgct
     3721 gcgacgtttg ctaccgcgaa tgcccgaaaa tcgatgaggc catcacgctg gagctggatc
     3781 gcaacatgcg cactggcaaa catgcgcgct ttctgcccac cgtacacagc gacgcctgta
     3841 ccggctgcgg caaatgcgaa aaagtctgcg tactggagca accagcgata aaagtgttgc
     3901 cgttgtcatt ggcgaaaggg gagttaggac accattaccg cttcggctgg ctggagggga
     3961 aagatggcaa atcgtaaacg cgacgccggg cgagaagcgc gggcgaaaaa aggctggtgg
     4021 cgtagccacc gttggctggt gttacgccgt atcagccagt ttatggtgct ggggatgttt
     4081 ctcagcggcc cgtggctggg cttttgggtt ttgcatggca actacagcag tagtttgctg
     4141 ttcgataccc tcccgttgac cgatccgctg attaccctgg aaagtctcgc cagtggacat
     4201 cttcccgcta ccgtggcgct gacgggagca gtgattatcg ctgtgctgta tgcgctggcg
     4261 ggaaagcgat tattttgcag ttgggtttgc ccgctaaacc ccgttaccga tttggctaac
     4321 tggatgcgca ggaaatttga cctgaaccag tcggcgacga ttccacgcca tatacggtat
     4381 gtccttctgg tggtggtgtt aatcggttcg gcgttgaccg gcacgctgct gtgggaatgg
     4441 attaatcccg tgtcgctgtt aggtcgtagt ctgattatgg gatttagtag cggcgcgttg
     4501 ctgattattg ctttgttttt atttgattta ttagtcgttg agcacggttg gtgcggtcat
     4561 atttgcccga tgggcgcgct gtatggcgtg ctgggcagta aaggcgtagt gaccgtgacg
     4621 gccaaaaaac gtgagaaatg taatcgctgt atggattgtt ttcatgtttg cccggaaccg
     4681 catgtgctac gtgcgccggt gctggatgag caaagcccgg cgcaggtcac tcaccgcgac
     4741 tgcatgacct gcggtcgctg cgtggatgtc tgttctgagg atgtttttac aataacgata
     4801 cacaacatca ttcgggatgc atcgcggcgg taagcgagga aatccccggg agcatagata
     4861 acgatgtgac tgggattttc gagcgcagcc aacaaagagg cagctcgaag gatgaagtgt
     4921 aaatgcgatg gagttcggga gcgaaacaat gaaaagccat gacctgatga aagcgctgtg
     4981 tcaatggatg gccacgcttg ccctggtggt aagtggtgcg gtttgggcgg caaacggagt
     5041 ggatctgagc cagtcgccgg aagtatccgg gacgcaggaa ggggcgattc gtatgccgaa
     5101 agagcaggaa cgtatgccgc taaattacgt caaccagccg ccgatgatcc cgcacagcgt
     5161 cgagggctac caggtgacga ccaataccaa ccgctgtctg caatgccacg gcgtggaaag
     5221 ttatcgtacg acgggcgcgc cgcgtatcag tccgacgcac tttatggaca gcgacggtaa
     5281 agtgtcgggc aacgtcgcgc cgcgtcgtta tttctgcctg cagtgccacg taccgcagtc
     5341 tgataccgcg ccgattatcg acaatacctt taccccctcg caaggttacg ggaaataaga
     5401 ggtcattatg gaaaattcta accgtaaact tggctggata aagcgcgtct ggcgatggtg
     5461 gcgcagcccc agccgcctgg cgctggggac gctgctgtta atcggtttta tcggcggcgt
     5521 catcttctgg ggcggcttca ataccggaat ggaaaaggct aataccgaag agttttgtat
     5581 tagctgccat gaaatgcgca acacggtgta tgaggagtat atggaaaccg tccactacaa
     5641 caaccgtagt ggcgttcgcg ccacctgtcc tgactgccat gtgccgcatg agtgggggcc
     5701 gaagatgatc cgtaagatca aagccagtaa agaactgtac gcgaaggtat ttgggctgat
     5761 agatacaccg cagaaatttg aagctcatcg cctgacaatg gcacaaaatg agtggcggcg
     5821 catgaaagac aacaactcgc aggaatgccg taactgccac aatttcgact ttatggatct
     5881 gaccgcgcaa aaaggcgtcg cggcgaaaat gcacgatcag gcggtaaaag atggacagac
     5941 ctgtatcgat tgccacaaag ggatcgcgca taaactgccg gatatgcgtg atgttaaacc
     6001 aggtttctga caggacgttg atgagtggg
//
LOCUS       DAJVSD010000254         5999 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.254, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000254 DAJVSD010000000
VERSION     DAJVSD010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5999)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5999)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5999
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.254"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            372..1160
                     /gene="phoH"
                     /locus_tag="OQP62_003884"
     CDS             372..1160
                     /gene="phoH"
                     /locus_tag="OQP62_003884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001741490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-inducible protein PhoH"
                     /protein_id="HCS1723306.1"
                     /translation="MGRQKAVIKARREAKRVLRRDSRSHKQREEESVTSLVQMGGVEA
                     IGMARDSRDTSPVKARNEAQAHYLNAIDSKQLIFATGEAGCGKTWISAAKAAEALIHK
                     DVERIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLLKRLGASFMQYCLRPEIG
                     KVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLP
                     RGVRSGLSDALERFEEDEMVGIVHFNKDDCVRSALCQRTLHAYS"
     gene            complement(1266..2147)
                     /locus_tag="OQP62_003885"
     CDS             complement(1266..2147)
                     /locus_tag="OQP62_003885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HCS1723307.1"
                     /translation="MEPQPPRLKPGKILDTLGAMQKSLTRASQRIAQYILAFPRQVTQ
                     SSIADLSRDTQAGEATVIRFCRTLGYKGFQDFKMDLAIELATTESDDSSPLLDAEVSE
                     SDDAHAIGLKLQNTISNVLSETLNLLDMQQVLGVVDALRHCHSVYIFGVGSSGITALD
                     MKHKLMRIGLRGDAVSNNHFMYMQATLLKAGDVAMGVSHSGTSPETVHSLRLARQAGA
                     TTVAITHNLGSPLCEEADFCLINGNRQGMLQGDSIGTKAAQLFVFDLLYTLLVQSSPE
                     QARESKLRTMNALDMTK"
     gene            complement(2433..3930)
                     /locus_tag="OQP62_003886"
                     /pseudo
     CDS             complement(2433..3930)
                     /locus_tag="OQP62_003886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460100.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter"
     gene            complement(4267..4947)
                     /locus_tag="OQP62_003887"
     CDS             complement(4267..4947)
                     /locus_tag="OQP62_003887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HCS1723308.1"
                     /translation="MSLLARLEQSVHENGGLIVSCQPVPGSPMDKPEIVAAMAQAAAS
                     AGAVAVRIEGIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADII
                     AFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKGIEFIGTTLSGYTGP
                     ITPVEPDLAMVTQLSHAGCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITRIEHICQ
                     WFSHAVKR"
     gene            5454..>5999
                     /locus_tag="OQP62_003888"
     CDS             5454..>5999
                     /locus_tag="OQP62_003888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminic acid mutarotase"
                     /protein_id="HCS1723309.1"
                     /translation="MGMQMKNFKKMMTLMALCLSVAITTSGYATTLPDIPEPLKNGTG
                     AIDNNGVIYVGLGTAGTSWYKIDLKKQHKDWERIKSFPGGAREQSVSVFLNDKLYVFG
                     GVGKKNSESPLQVYSDVYKYSPVKNTWQKVDTISPVGLTGHTGVKLNETMVLITGGVN
                     EHIFDKYFIDIAAADESEKNKV"
BASE COUNT         1681 a         1340 c         1433 g         1545 t
ORIGIN      
        1 tgaatatatt gttgcattat tgatgttttg tgttgtactt agtagtaata gcggtagttc
       61 cccggcagtg atggtcactc actatggaga tcgcgaatgg taatgtccgc accaggacac
      121 attgtttaca gtagttacaa caccctgtac ggacattctc tctccggtgg tggtcttgtc
      181 atcttaaaag ctctcatcat ttcccttact gtccataccc atgacgccat atgtggtgcg
      241 cgtagccgtg tgtggcgtcg tttcaaaaag caagctaagg cttacaagga agccaaccct
      301 cagatgtgtg tgcgcataat cgcgttcaag agaacgcggg tgatgtatac ctacaactca
      361 aggtgctatc catgggaaga caaaaagcag tgatcaaagc tcgtcgtgaa gcaaagcgtg
      421 tgttgagacg agattcgcgt agtcataagc aacgtgaaga agaatcggtc acgtcactgg
      481 tacagatggg cggagtagaa gccattggca tggcgcgcga tagtcgcgat acctctcctg
      541 ttaaggcgcg aaatgaagca caggcgcatt atctgaacgc tatcgacagt aaacagctta
      601 tttttgcgac cggcgaagcc ggctgcggaa aaacatggat cagtgcggca aaggcggcag
      661 aagcattgat tcataaggac gtcgagagga tcattgtgac gcgtccggta ttgcaggctg
      721 atgaagatct tggttttttg cccggtgata tcgctgaaaa attcgcgcct tattttcgtc
      781 ccgtctacga tgtcctgctt aaacggttgg gcgcgtcctt tatgcaatat tgtttgcgcc
      841 cggaaatcgg taaggtagaa attgccccgt tcgcctatat gcgtgggcgt acttttgaaa
      901 atgcggtcgt gatcctcgac gaggcgcaaa atgtgactgc ggcgcaaatg aaaatgtttt
      961 tgacgcgatt aggcgaaaat gtcacggtca ttgtcaatgg cgatattacg caatgcgacc
     1021 tgccgcgcgg tgtgcgttcc gggttgagtg atgcgttgga acgctttgaa gaagatgaaa
     1081 tggtggggat tgtgcatttc aacaaagacg actgcgtgcg ctcggcgctt tgtcagcgaa
     1141 cgctccacgc atacagctaa tatagcattg actttcagag cccgggagac cgggctttgt
     1201 tgtctataaa gcgtccagca gactcatgga caaaaaagga aaatgacgcc tgtacgtgaa
     1261 gggaattatt ttgtcatgtc cagggcattc attgtccgta atttgctttc tcgggcctgt
     1321 tccggcgagg actgtacaag aagggtatag agcaggtcaa agacgaaaag ctgcgcggct
     1381 ttcgtaccga tcgagtcacc ctgcaacatt ccttgccgat taccattgat caggcaaaaa
     1441 tcggcctctt cacataatgg agaacccaga ttatgggtaa tggcgactgt ggtggcgcca
     1501 gcctgtcggg ccaatcggag tgaatgcact gtttctggcg atgtgcccga gtgactgaca
     1561 cccatcgcga catcgcctgc ttttaatagc gtagcctgca tgtacataaa atggttattg
     1621 cttaccgcat cgccccgtaa accaatacgc attagcttgt gtttcatatc cagcgccgtg
     1681 atccccgatg agcccacacc aaagatataa actgagtgac agtgacgtag ggcgtccacg
     1741 acaccgagaa cctgttgcat atcaagcaga tttagcgttt cagataatac attactaatg
     1801 gtgttctgca attttaaacc aatggcgtgg gcatcgtcgg attcgctaac ttcggcatcc
     1861 agtagaggac tactgtcatc agactcggta gtggcaagtt caatggccag gtccatttta
     1921 aaatcctgaa aacctttata gcccagggtg cgacaaaagc gaataaccgt ggcttctccg
     1981 gcctgtgtgt cgcgcgacaa atcggcaata gatgactgtg tcacctgtct ggggaaggct
     2041 aaaatatatt gcgcaatacg ctgggaggca cgtgtcaggc ttttttgcat agcacccaga
     2101 gtgtcaagga tttttccggg tttaagacgt gggggttgag gctccatata gttcctgctc
     2161 ttgagggctg attgcggcac aaagcctgca atatcgaaca gagcagagcc tatcaagtct
     2221 gcggcatgaa aaaaagcgcg atgtaagtaa aggaggggga atatttacat cgcgttgcca
     2281 acttatgaca gaacatcact ggagagtaat ctgtttgctc ttacggtgtt tatagcgcgc
     2341 catctgtcgg atggtttata tctggcccgg tattgtcgcc ccgcgcgttg gcgtcaccgt
     2401 gtgctgtgtc ggtatagcgt ggtatcatga aatcataatg tcacctttgg ttcaggtttt
     2461 tcatccagcg tcaatggcgg tgccggggca aataacgggg cgaaaataac gccgctgatc
     2521 accacgctta gcgagccaat gaccccataa aagaagaagt taaggtcagt ggcatagcgt
     2581 gtgcccagca cggtaatgac gctgataata attcctaaaa ccgcactccc ggcatttgct
     2641 cgtttaaaga aaatgcccag catgaacaga ccggtcattg gccctcccat cagacctatc
     2701 agactattaa atgcatccca gatttctgat tcatcggcca tgaccagcca taccgaggcc
     2761 gcgctactta tcaggcccgc gaccagaata actaacttag ctattttcat acggttttct
     2821 ggcgttcctt ttttatgact caaacgctga tagatatcgg aattaaaaca actggaaatg
     2881 ctgtttaagc tgctggagat gctggactgc gcggcagcga aaatagcgga gattatcaac
     2941 cctgcaatgc cgactggcat ttcggtgacc acgaataagg gcaaaatgcc gccagtgttg
     3001 aatcccgccg gtaataattg tggatgttgc tgatagtaga caaataatgc cgagccgata
     3061 gcaaaaaaga aaacagggat cacagcaacc agtttggcat ttgtaagtaa tgttttcttc
     3121 gtttcctcta tggagtcagt cacgatatag cgttggacca catcctgact ggcagtaaat
     3181 tgctgaatat tggcaaacag aaaaccaatc atcaatacag gtactgtgct ttccgtccag
     3241 ctccagtgga actgcgtagc cggaaagaat ttatccgcct gctgcgtcac cgtaaaaatt
     3301 tcaccaatgc cgccctggac tttgagacat atcactataa aaatcagtat cgcgctgcca
     3361 gaaagtaaga gaccttgaat aacatcagtc catattactc cttcaattcc cccccatcca
     3421 ggtataaatg atacacatca cactaatcaa cagtaccaaa atcaccgggt ctatagcgat
     3481 gaaggggcgc aaggccagca cggtgaggaa agtgataatg gcgatacgtc caatatgaaa
     3541 caacataaat gacatgctgg cgaacagacg gcagcgcaca tcgaaccgtg cttcgagata
     3601 ttcataggct gatgtgactt tcaatttccg aaaaaacgga atatagaaat aaaaaaccag
     3661 cggtaaaatt gcgatagcca gatactgacc aatgataaac gtccagtcgg aagtaaacgc
     3721 tttggcagga attgacataa atgtaattga gcttaacgta gtagcaaata cactgacccc
     3781 agccgcccaa ccaggaaccc ggccaccacc gcgaaaataa tcgtctgctg ttttttgccg
     3841 tctggaaaaa tagacaccga ctaacatcat ggccaggagg tagccaaata atacaaaata
     3901 attaacgatg ccgaaagaat gtgtaatcat agttctttcc tgcttatggt tttgagtagc
     3961 gttgcggtca tcgtctgtgt atttttatct tcccatcatt cagacgatac gatattcaga
     4021 tcaagcaata gtttttgtta atctcaatga cgctaatcat gagatgtaaa aggcagagca
     4081 tttatgctcc accaatggtg atgcccagac gtatgtcctg ccggatacct gaaatagcag
     4141 ctatccgata ttgcgttcaa acaggcttca ggcctgggta tcgtatttgc cgatagcatt
     4201 cttaacgtcg gattattctc tgagacataa atatcaatag taagcgtgtt cattttcttt
     4261 tcctgttcag cgttttactg cgtgactgaa ccactgacag atatgctcga tacgggtgat
     4321 agcggaacca acggtaactg cccaggcacc atgctcaata gcattggccg ccagtgcagg
     4381 cgtgttatag cgcccctcgg caataacacg acaacctgca tgactcagtt gtgtcaccat
     4441 tgccaaatct ggctcaaccg gcgtgatggg accggtatag ccagacagtg ttgtaccaat
     4501 gaattcgatt cctttctgat ggcaacttat gccttcattc acggttgaac agtctgccat
     4561 cgccagtaat ccatgcaggc gaatacgtgt cagtaaacta tcaatatcaa ccgggcgaga
     4621 gcggaatgag gcatcaaaag cgataatatc ggcacctgcc tgcgccaggg cgtcaacatc
     4681 ctgtaaatat ggagtgatac ggactggcga ccctgtaagg tcacgtttaa ttatcccaat
     4741 aataggaaca gaaagatggg gacgaacagt ccgcagattc tcaatgcctt caatgcgcac
     4801 agcgaccgca cccgccgaag ccgctgcctg tgccattgca gccacaattt caggtttatc
     4861 catagggctg cctggtaccg gttggcatga gacaatcagc ccaccgtttt cgtgtacact
     4921 ttgttccagc ctggctaata gtgacatcca gttccgcctt atatattttg aagttttact
     4981 ccgttttata ttatgttgtg gagtgttgct gcatcaagca aaaagataga aaaatgtgaa
     5041 cacagtcata aggtatgttt gtcattcaat tactgcgcca gcggatttga ggctataacc
     5101 tgaagctaca agacaaatac aattcattct gacggcagca tgctgtattt tattaactgc
     5161 ttccggcata aagataaaat gctcagaagg agcttatacg ccacgggata gccagtatga
     5221 aatgcatcac ataattcttg ttgtatttat tcagaatgca atcactaatg agtttgccca
     5281 taacaggtca cccataatca cttctaacat caccatagtg tgcttttacc tcgcacatgg
     5341 taaccccatg taattatttt tagcgcttgg tcacattttg tcattttcat tgttgaaatt
     5401 atgcaccata agatcactaa tgatgaagct ttactccagt tgtatttctt cgcatgggga
     5461 tgcagatgaa aaattttaag aaaatgatga cgctaatggc gctatgttta tcagttgcta
     5521 tcaccacatc aggatatgca accacgcttc ctgatatacc agaaccactg aaaaatggta
     5581 ctggcgctat tgataataat ggcgtgattt atgtcggctt aggtaccgca gggacatcct
     5641 ggtataaaat tgatcttaaa aagcaacata aagactggga gcgtataaag tcgtttcctg
     5701 gtggagctcg tgagcaatcc gtgtcggtat ttttaaatga taagctgtat gtttttggtg
     5761 gcgtagggaa aaaaaacagt gaatcaccgt tgcaggttta tagcgatgtg tacaaatact
     5821 caccggtgaa aaatacatgg caaaaagttg atactatatc tccagttgga ttaacagggc
     5881 atacgggagt aaaattaaac gaaacgatgg tacttattac cggaggggtt aatgagcata
     5941 tctttgataa gtattttatt gatatagcgg ctgcggatga aagtgaaaaa aataaagtc
//
LOCUS       DAJVSD010000255         5985 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.255, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000255 DAJVSD010000000
VERSION     DAJVSD010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5985)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5985)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5985
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.255"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..373)
                     /locus_tag="OQP62_003889"
     CDS             complement(<1..373)
                     /locus_tag="OQP62_003889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001171576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723310.1"
                     /translation="MQKPILSLNSTCIVGGILWLLPVIVVHADEIVCPAVIHFSQAPI
                     ISSAEGWNVSSRAARMLNDGGFLSSGDPKEQADLKGEDAVVDGKKGHLWEIDPEDNRR
                     GIWFSCSYGQWAVLLARKVQGT"
     gene            complement(345..746)
                     /locus_tag="OQP62_003890"
     CDS             complement(345..746)
                     /locus_tag="OQP62_003890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001147173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BPSL0067 family protein"
                     /protein_id="HCS1723311.1"
                     /translation="MPYVYANAKALQDTEKVGNHHQCVELIQHYIRVGQASTWQQGAA
                     VFGNKNIEVGTVIATFVNGRYPNHNSGNHAAFFLGQDTGGIWVMDQWKDDIAKPRVSK
                     RYIRKLHNGSVRSDGTYIRMSNNAEAYFIVE"
     gene            complement(799..2307)
                     /gene="tssC"
                     /locus_tag="OQP62_003891"
                     /pseudo
     CDS             complement(799..2307)
                     /gene="tssC"
                     /locus_tag="OQP62_003891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459271.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     large subunit"
     gene            complement(2331..2873)
                     /gene="tssB"
                     /locus_tag="OQP62_003892"
     CDS             complement(2331..2873)
                     /gene="tssB"
                     /locus_tag="OQP62_003892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     small subunit"
                     /protein_id="HCS1723312.1"
                     /translation="MAINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLA
                     DLAGKPREELPPVTDRKFLDIDIDNFNERMKAIAPRVAFAVPNTLTGEGQLMVDITLE
                     NMDDFSPAQIARKVDALNQLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLA
                     NAPKSAATQQGVSADNESAE"
     gene            complement(2937..3227)
                     /locus_tag="OQP62_003893"
     CDS             complement(2937..3227)
                     /locus_tag="OQP62_003893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000175185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723313.1"
                     /translation="MTLRDPALLTPLLMMFAFSVHGEPPLPQDVQHFLSNAEMCQHLA
                     GEWDSSLPEEDKKDIKKGINTWCPPAKKALPGLREKYKENKEIIKKLSEYDF"
     gene            complement(3313..5976)
                     /gene="tssH"
                     /locus_tag="OQP62_003894"
     CDS             complement(3313..5976)
                     /gene="tssH"
                     /locus_tag="OQP62_003894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000449792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system ATPase TssH"
                     /protein_id="HCS1723314.1"
                     /translation="METPVSRSALYGKLAGPLFRSLESATAFCKLRSNPWGELTHWLH
                     QLTQQPDNDILHVLRHYQIPLSDVEKALLRQLDMLPAGASAISDFSHHIDLSVEKAWM
                     LASVRYGDNKIRSGWLLLALLTTPELRRVLSSICAPLATLPVDELTEILPSLIETSPE
                     AQERPYDGSGLASAIPGESSQAIPNGVQDGKSALAKYCQDMTAQARDGKIDPVTGREH
                     EIRTMTDILLRRRQNNPLLTGEAGVGKTAVVEGFALAIAQGEVPPALREVRLLALDVG
                     ALLAGASMKGEFESRLKGLLEEAGRSPQPVILFVDEVHTLVGAGGASGTGDAANLLKP
                     ALACGTLRTIGATTWSEYKRHIEKDPALTRRFQVLQIAEPEEIPAMEMVRGLVDTLEK
                     HHNVLILDEAVRAAVQLSHRYIPARQLPDKAISLLDTAAVRVALTLHTPPASVQFLRQ
                     QLKAAEMERSLLQKQEKMGIQSDERCDALTARIFSLNDELTASESRWQRELELVHTLQ
                     ELRVAESDADDKTTLQQAETALREWQGDAPVVFPEVSAAIVAAIVADWTGIPAGRMVK
                     DEASQVLELPARLAQRVTGQDGALAQIGERIQTARAGLGDPRKPVGVFMLAGPSGVGK
                     TETALALAEAIYGGEQNLVTINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRH
                     PWSVVLLDEIEKAHHDVHELFYQVFDKGGMEDGEGTHVDFKNTTLLLTTNVGSDLISQ
                     MCEDPALMPDATGLKEALMPELRKHFPAAFLGRVTVIPYLPLDETSRGVIARLHLDRL
                     VARMGEQHGVTLTYSEELVAHIVACCPMHETGARLLIGYIEQHILPQLSRYWLQAMTE
                     KAAIRQIDIGVNGDEQIVFETTSQEGICQKS"
BASE COUNT         1278 a         1743 c         1512 g         1452 t
ORIGIN      
        1 ccgttccctg aacttttctg gcaagcagaa cagcccactg tccataacta cacgagaacc
       61 agatcccccg gcgattatcc tctgggtcta tctcccacag gtgccccttt ttcccatcaa
      121 cgactgcatc ttcacctttc agatctgcct gctctttggg atcgccagac gaaagaaaac
      181 caccatcatt caacatacgc gctgcacggg atgagacatt ccatccttcc gctgaggaaa
      241 ttattggagc ctgagaaaaa tgaataaccg cagggcagac aatctcatcg gcatgaacaa
      301 ctattaccgg aagtaaccac agaatgcccc cgacaataca ggtgctattc aacgataaaa
      361 taggcttctg cattattact catccttata taagtcccgt cactacgaac acttccatta
      421 tgcaactttc ttatataacg tttggacaca cggggttttg cgatatcatc tttccattga
      481 tccatcaccc atatcccgcc agtatcttgc cccaaaaaaa atgcagcatg gttgccacta
      541 ttgtggttcg gatatcgccc attcacaaaa gtagcgataa ctgtcccgac ttcaatgttt
      601 ttgtttccaa atactgcggc cccttgctgc catgtactcg cttgtcctac tcgtatatag
      661 tgttgaataa gttcaacaca ctgatggtgg tttcctacct tttctgtatc ctgtaaagcc
      721 tttgcattag cataaacata tggcatatat tctcttaata tcctctgata ttatttatac
      781 attcacaaaa taaatgcatc aggcattgcc ctgcttcact gacggcagtt ttgtcaccag
      841 gcgcagcgat cctgtcagcc cttcaagctg gaaatgcgga cgcaggaaga atttcgcgtc
      901 gtaataacct ggattgcctt ccacctcttc caccactacc tccgcggcag ccagcggacg
      961 acgggctttg gtttcttgcg aggagttcac cggatcggcg tcgacataat tcataatcca
     1021 ttcatttagc cagcgctgca tatcctcgcg ctctttaaag gaaccgattt tgtcgcggac
     1081 gatacatttg aggaagtgcg cgaagcgcga gcaggcgaac aggtacggca gacgggcgga
     1141 caggttagcg ttagccgtcg cgtccggatc gtagtattcc tgtggttttt gcagcgattg
     1201 tgcgccgata aaggcggcat agtctgagtt tttacggtgg atcaacggga taaaaccgtt
     1261 tttcgccagt tcagcctcgc ggcggtcaga gatggcgatt tcggtcgggc atttcatgtc
     1321 cacgccgcca tcgtcagtcg ggaaggtatg gcagggaaga ttttccaccg caccgcctga
     1381 ttccacaccg cgaatcaacg tacaccagcc gtagtgtttg aaggaacggt tgatgtttac
     1441 gcccatcgcg taggccgcgt tgctccagac gtatttggta tggtcagaac catccgcatc
     1501 ttcttcaaaa tcaaactcgt ccaccgggtt ggtttttgcg ccatacggca ggcgggcaag
     1561 aaaacgcggc atcgtcaggc caatataacg ggagtcttcg ctagcccgca gcgagttcca
     1621 cggcgcatat tccaggttct gggtgacgat tttggtcagg tcgcggggat tcgccagctc
     1681 ctgccaggag tccatttgca gtaccgaggg ggaagccccg gcaataaacg gcgcatgggc
     1741 cgacgcggcg actttggcga tagagccaag cagatccaca tcgggcggtg tatggtcgaa
     1801 gtagtaatcc gcaatgatac agccataagg ttcgccgcct aactggccgt attcggcttc
     1861 atacagtttc ttgaacatcg ggctttgatc ccaggcggtg cccttgtaac gcttcatgtt
     1921 gcgccgcaat tcatcttttg acagattcat gaagcgaatt ttcagctttt cgtcggtctc
     1981 ggtgttgtaa accagatgct ccataccgcg ccacgaggat tccagcttct gccagtcggg
     2041 atgttgcagg atcagtttga tctgttcggt cagtttaaag tcgatctgcg caataatagc
     2101 gctgatgctt ttataggcgt catcgctgac ggtgatcgtg ttcgccagcg cctgttgcgc
     2161 cagcgtctac accgcggctt ccacagcttt tgccgcctgg gtagtcttgg gtcggaaggc
     2221 ctgattcagc aacgcatcaa attcaccgga tgcggagacg gtatcctgag caaccgcgtc
     2281 ggttgcctgc atattactgt ttgccatgaa aattccttaa aaattcgaca ttattccgct
     2341 gattcattat ccgctgacac accttgctgg gtagcggccg atttcggcgc attcgccagc
     2401 gttttcagca gagtcgggtc ctgcaacagt ttattgacca gattttccgc cccggccttg
     2461 ccatccatgt aggtctggag gttcgccagt tgagtgcggg cttccagtaa ctggttcagg
     2521 gcgtccacct tgcgggcaat ctgtgccggc gaaaagtcgt ccatattttc cagggtgata
     2581 tcgaccatca actgaccttc acccgtcagc gtattcggca cagcgaacgc cacgcgcggc
     2641 gcaatggctt tcatgcgctc attgaagtta tcaatatcaa tatcgaggaa tttgcgatcc
     2701 gtcaccggcg gcagttcttc acgcggtttc ccggccagat cggccagcac cgccatcacg
     2761 aacggcagct cgattttttt ctcggaaccg taaatctcta cgtcatattc aatctgcacg
     2821 cgcggcgcgc ggttgcgcgc gatgaatttc tgcgcgctat tgttgatagc cataatcctt
     2881 catttccttt ttagtcaact ggttgccgca aggggagcgg tataccggta cagtttttaa
     2941 aaatcatact cagagagttt ttttataatc tctttgtttt ctttgtactt ttcccgtaac
     3001 ccaggaagtg cttttttcgc cggagggcac caggtattaa tgcccttttt tatgtctttt
     3061 ttatcctctt ccggtaaaga actgtcccat tcgccggcca gatgctggca catctctgca
     3121 ttgctcagaa aatgctgcac atcctgtggt aaaggcggtt cgccatgaac actgaaagcg
     3181 aacatcatta gcaaaggagt caataacgcc gggtcacgta atgtcatatt taatgcccat
     3241 caattgacca gtggggttta tctgtatttc cgccgacaaa cttagtcacg ccataaaccc
     3301 actgcgcacc acttaactct tttggcatat tccctcctgc gaggttgtct caaaaacaat
     3361 ctgctcatca ccattaacgc cgatatcaat ctgcctgata gcggcttttt ccgtcatggc
     3421 ctgcaaccag tagcgcgaca gttgtggcag gatgtgctgt tcgatgtagc caatcagcaa
     3481 ccgcgcgccc gtttcatgca ttggacagca cgccacaata tgtgcgacca gttcctcact
     3541 atacgtcagc gtcaccccgt gctgttcacc catccgcgcc accagccggt caagatgcag
     3601 acgggcaatc acgccacgcg acgtttcatc cagcggcagg taagggatca ccgtcacgcg
     3661 gcccagaaat gccgccggga aatgcttgcg caattccggc attagcgcct ctttaagccc
     3721 cgtagcatcg ggcattaagg ccggatcttc acacatctgg ctgatgaggt cggaacctac
     3781 attggtggtg agtagtagcg tggtgttttt gaaatcgaca tgtgttccct caccgtcctc
     3841 catcccgccc ttgtcaaaca cctgatagaa gagttcatgg acgtcatggt gcgctttttc
     3901 gatctcgtcg agcagcacta cgctccaggg gtgacgacgc accgcttccg tcagcacacc
     3961 accctcgcca tagcccacat agccgggcgg cgcgcctttc agtgtggaaa cggtgtgagc
     4021 ctcctggaac tcgctcatat tgatggttac caggttctgc tcaccgccgt agatagcctc
     4081 cgccagcgcc agcgcggttt cggttttacc gacaccggac ggcccggcca gcataaacac
     4141 gcccaccggt ttgcgtggat cgcccagtcc cgccctggcg gtctgaatac gttcaccaat
     4201 ctgcgccagc gcgccgtctt gcccggtaac gcgttgcgcc agtcgggcag gcagttccag
     4261 cacctggctg gcctcatctt tcaccatgcg cccggcagga ataccggtcc agtcggcgac
     4321 aatcgccgcg acaatcgccg cgctgacttc cgggaacacc accggcgcgt cgccctgcca
     4381 ctcccttagc gctgtttcgg cctgttgcag cgtggttttg tcatcagcat cagactctgc
     4441 gacacgcagt tcctgcaacg tatgtaccag ttccagctcc cgctgccagc gggattcgga
     4501 tgcagtcagt tcatcgttga gcgagaaaat tcgcgccgtc agcgcatcgc accgctcatc
     4561 tgactgaatc cccatttttt cctgcttctg caacagcgac cgttccattt ccgccgcttt
     4621 tagctgctga cgcaggaact gtacgctggc aggcggcgtg tgcagcgtca gcgccacgcg
     4681 gaccgcggcg gtatccagta ggctgatggc cttatccggc aactgccggg cgggaatgta
     4741 gcggtgagaa agctgtaccg ccgcacgtac cgcctcatcc agaatcagta cgttatggtg
     4801 tttttccagc gtatccacca gaccacgcac catttccatt gcggggatct cttccggctc
     4861 ggcaatctgc aacacctgaa aacgacgggt cagcgccgga tctttctcaa tatggcgctt
     4921 gtattcgctc caggtggtgg cgccgatagt ccgcagggtg ccgcacgcca gcgccggttt
     4981 cagcaggtta gcggcatcgc ccgtgccgga tgcgccgccc gcgcccacca gagtgtgaac
     5041 ttcatcgaca aacagaataa ccggctgcgg cgagcgcccg gcctcttcca gtaacccttt
     5101 cagacgcgat tcaaactcgc ctttcatgct ggctccggcc aacagagcgc caacgtccag
     5161 cgccagcagc cgtacttccc gcagcgcggg cggcacttcc ccctgcgcaa tcgcgagggc
     5221 aaaaccttcg acgaccgccg tctttccgac gcccgcctca ccagtcagta ggggattatt
     5281 ctggcgacgg cgcagcagaa tatccgtcat ggtgcggatt tcatgctcac gccccgtcac
     5341 cgggtcgatt ttgccgtcgc gcgcctgtgc cgtcatgtcc tgacagtatt ttgccagcgc
     5401 ggatttaccg tcctgcacgc cgttgggaat cgcctggctg ctttcaccgg gaatggctga
     5461 tgccagaccg gagccgtcgt aagggcgctc ctgcgcttcc ggcgatgttt cgatcaacga
     5521 gggcagtatt tccgtcagtt catcaaccgg aagcgtggcc agcggcgcgc agatactgct
     5581 cagtacccga cgcagttctg gcgtggtcaa caaggccagc agcaaccagc cgctgcgaat
     5641 tttgttatcg ccgtaacgga cgctcgccag catccaggcc ttttcaacgc tgagatcgat
     5701 atggtgagaa aaatcactaa tggcgctggc cccggcgggc agcatatcca gttgccggag
     5761 taacgctttc tccacatcag aaagagggat ctggtaatgc cgaagaacgt ggagaatatc
     5821 gttatcgggc tgctgtgtta actggtgcag ccagtgagtc agctcacccc agggattaga
     5881 gcgtagtttg caaaatgccg ttgccgattc cagcgaccgg aatagtgggc cggccagttt
     5941 tccatataac gcactgcgtg aaacaggagt ttccatttgt tatgc
//
LOCUS       DAJVSD010000256         5973 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.256, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000256 DAJVSD010000000
VERSION     DAJVSD010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5973)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5973)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5973
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.256"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(60..548)
                     /locus_tag="OQP62_003895"
     CDS             complement(60..548)
                     /locus_tag="OQP62_003895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004889762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1723315.1"
                     /translation="MISAPEPLHAGHILTPFCCGVDSMDNWLKQRAMKNQVTGASRTF
                     VCCGSDSDVLAYYSLASSAVTTNTAPGRFRRNMPDPIPVVVLGRLAVDRSLHGQGVGR
                     ALVRDAGLRVIQVAETIGIRGMLVHALSDEAREFYLRVGFEPSPMDPMMLMVTLGDLV
                     HA"
     gene            complement(545..838)
                     /locus_tag="OQP62_003896"
     CDS             complement(545..838)
                     /locus_tag="OQP62_003896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HCS1723316.1"
                     /translation="MPVANSMAMKRETLNLRIKPAERDLIDRAAKARGKNCTDFVLEA
                     ARAAAEEALIEQRIIMADPEAYQAFLIRLDQAPAPNDALRKTMQTPAPWEQEK"
     gene            complement(1265..2278)
                     /locus_tag="OQP62_003897"
     CDS             complement(1265..2278)
                     /locus_tag="OQP62_003897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000449622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS1723317.1"
                     /translation="METNITWQQLIDEYFFAKPLRSASEWSYTKVFKSFVHYMGPLSC
                     PNDVTYHKVLAWRRFLLKEKKLSGRTWNNKVAHMRAIFNYGIQRGLLHYDENPFNNSV
                     VKPDKKRKKTLTQAQIEYAYQIMEQYENQENTGLGLKYSRCALFPAWFWLTVLDTLYY
                     TGIRQNQLLHIRLNDVDLREGQIRLITEGCKNHKEHYVPVISFLRPRLTCLMEKAQSE
                     GLKGNDRLFNIALFTGKDPAIGDDMDSPQVRAFFRRLSKECQFAISPHRFRHTLATEM
                     MKMPEQNLHMAQSVLGHSNMKSTLEYVENDIAVMGRALEAQFMQIKAAHARSIYSGLT
                     KNR"
     gene            complement(2442..4031)
                     /locus_tag="OQP62_003898"
     CDS             complement(2442..4031)
                     /locus_tag="OQP62_003898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015606341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HCS1723318.1"
                     /translation="MFRKVKSWMEKKNFRQIEENKSGNAKKRLIPCTDGYFNPAAISD
                     LLQHERRQQWLRILWENSALPKERFERYFLLPLHGVVGLCQRLPASAQGKFAYTDGMV
                     DYVIQTTVFAVRLSKGYMLPRGASAEEQSAQSVSWSAVVYYAALFHSLGRLWNIEGEL
                     RSGAVWRPGLSVPEEPYRFRFKAEPDIAGAQVYGELIALRFLPEPVLQWLGKNPDILR
                     TLLAFISGRYSDAMDITDIVNEAIVHAGGIPLGFPIAQEEQTSELAEILNPAATVAPV
                     LRKGSSTTPPDVPVMVDGGQETTVLLSSLDSDAKPERGEGQPTAETDPDVLQVMSILG
                     GLTNTDTQSPEKEGVNTETDMVAGESFPEVAVALETSAAEEVINDTVTTECTGSSSGG
                     ISSLSSTELGDLFWSWLRDGLREGDIPVNTADACVHLTCGFVFISVPGVFFLFLKSHS
                     RSCSSGLKESGRKEQVQAAFEKMRKHRVSDSRRFWQCCLYEEPGGRGRYKKLTGYLIK
                     MSEIYANGNFPDDSLFLKVIN"
     gene            complement(4015..5526)
                     /locus_tag="OQP62_003899"
     CDS             complement(4015..5526)
                     /locus_tag="OQP62_003899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001120833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HCS1723319.1"
                     /translation="MPHTDTPEQAAVIAWKGERLVVCAFAGSGKTTTLRRYAEENPTE
                     RMLYIAYNRAIRDEAEQKFPFNVTCKTSHQLAWPTVGKHYSHRLINSLRLTYVARALN
                     SRNWLLARLTLDVLNRFICSAATDITPEHMPDPDDCKGLQPGQILFSAKKIWAMMSAR
                     QGDFPVTHDTYLKLYQLSKPNLSSRYTTLLFDEAQDANPVISAIVLNQTCRVVLVGDT
                     HQQIYRFRGADNAMQAPQLENSDRLWLTHSFRFGPEVAGVANRLLALKGETHQITGKG
                     GAGRVLLTMPRNFGHHAVLHRSVCGVIRTALHWSLAGRKVFWVGGMESYRIEDLLDLY
                     WFSIDMSERMRHDRLTREYRDYDEYLQIAEDTGDVEMKQGIFILEQFFPLPDRLNTLR
                     EQRVISESEADVTVCTAHRSKGLEWDRVKLHDDFLDILDPDMPESQRQDEINLMYVAA
                     TRARKVLITDPILHELLIQPRAEDIAGTSADKSGESEVSTENDKKGTEYVPES"
BASE COUNT         1563 a         1564 c         1296 g         1550 t
ORIGIN      
        1 tatatcattg ataatttgat tcataaaaca accatcttat tggcaccaaa taataccaat
       61 caggcatgaa ccaaatcccc caacgtcacc atcaacatca tcggatccat cggcgacggc
      121 tcaaacccca cccgcaggta aaactcccgc gcttcatccg acagggcatg gaccagcatc
      181 ccgcgaatac cgatagtttc cgccacctga atcacccgca gcccggcatc cctcaccagc
      241 gcccgaccta cgccctgccc atgtagcgac cgatccaccg ccagacggcc cagcaccaca
      301 accgggatcg gatcgggcat attgcgacga aagcgaccgg gggcggtgtt tgtcgttacc
      361 gcgctggacg ccagcgaata atacgccagt acgtcagaat cgctgccgca acacacaaag
      421 gtacgggatg cgccagttac ctgatttttc atcgcccgct gttttagcca gttatccatt
      481 gaatccacac cgcagcagaa gggggtaaga atatgcccgg catgaagcgg ttcaggggcg
      541 gagatcattt ttcctgctcc cacggtgcag gagtctgcat ggttttacgc aacgcatcgt
      601 ttggcgcagg agcctgatcc agacggatca gaaatgcctg ataagcctct ggatcggcca
      661 taatgatgcg ttgctcgatc agcgcttcct cggcggcggc gcgggcagct tctagcacaa
      721 agtctgtgca gtttttccct ctggcttttg cagcccgatc gataagatcg cgctcggcgg
      781 gcttgatgcg caggttcagg gtttcgcgtt tcatcgccat actgtttgcg actggcatgg
      841 tgttgtcctc ttgtgtttct gtggatatta agtatacaac acgcgtaacg cagatgtcat
      901 tacgatagat ttaaagggaa tcgaaccagt gcatcgaacc gaacaagttt ttatacctca
      961 aaagccacta ttttgattta caagtaaaaa tacgggtcac gctcagggtc ttgacaattc
     1021 gtcaaaaacg gatttatgac ggaattcaat ttaatagata gctgaatgct cccgagtccg
     1081 ggcaccactc ttatcaaagt acgttggtta gggcttgaga accttaacgg acgttacgtg
     1141 gaacccgaaa ggacaatcga tgtagcaggt cagtctacac atcgagatgg atttttgggt
     1201 ttctcaagta agggaacttg ttggcgcaag ttcccttttc tcgatcaccc gatatcgtta
     1261 cagcttatct attctttgtc aacccactgt aaatgcttcg ggcatgtgct gccttaatct
     1321 gcataaactg cgcttccaga gccctcccca tcactgcaat atcattctcc acatactcca
     1381 gcgtggattt catgtttgaa tgacccagca cactttgcgc catatgcaga ttctgttccg
     1441 gcattttcat catctccgtg gccagcgtgt gtctgaaacg atgaggactg atcgcaaact
     1501 gacactcctt ggacagacga cggaagaatg ctcttacctg aggagaatcc atgtcatcgc
     1561 caatggcggg atctttgccg gtaaaaagtg caatattgaa caggcggtca ttacctttca
     1621 atccttcgct ctgcgctttc tccattaaac aggtcagccg tggacgcaga aaactgatca
     1681 ccggcacata gtgttctttg tgatttttac acccctccgt aatcagccga atctgccctt
     1741 ctctcaaatc aacatcattc agccgaatat gtaataactg gttctgacgt atccctgtgt
     1801 aatagagcgt atccaggaca gtgagccaga accatgcagg aaataaggcg cagcgggaat
     1861 atttcagtcc cagccctgta ttctcctgat tttcatactg ctccatgatc tgataggcat
     1921 actcaatctg tgcctgagtg agcgttttct ttctcttctt gtccggttta actaccgaat
     1981 tgttaaacgg attttcgtca tagtgcagta accctcgctg tattccgtag ttaaagatgg
     2041 cccgcatatg cgccaccttg ttattccagg tacgtccgga cagctttttc tcttttaaaa
     2101 gaaaacggcg ccaggcaagc actttgtgat atgtcacatc attagggcag cttaacggcc
     2161 ccatataatg tacaaatgat ttgaagactt tggtgtaact ccattcagat gctgagcgca
     2221 gaggttttgc gaagaaatat tcatctatca attgttgcca ggtaatattt gtttccattt
     2281 ttatcaccgc tattgagctt ttattattaa tacacacaca gcttgtgtgg atttaaattc
     2341 ccgtaatttc atgcacatga caacggaaaa atatttcaat ttgttacagg aactgatggt
     2401 tttttaagac ttttcttata tttattttgt tacattttat ttcaattgat gacctttaga
     2461 aataaactgt cgtcgggaaa gttaccatta gcataaatct ctgacatttt tatcagatac
     2521 cctgttaact ttttgtatct ccccctgccc cctggctctt cataaagaca gcactgccag
     2581 aatcgccggg aatcactgac ccgatgcttt cgcatcttct caaatgccgc ctgcacctgc
     2641 tccttcctcc cgctttcttt cagaccagaa gaacaggaac gcgaatgtga tttcaaaaac
     2701 agaaaaaaaa cacccgggac gctgataaat acgaagccac aagtcagatg aacacaggca
     2761 tcagcagtat ttactggtat atccccctca cgaagcccat cccttagcca ggaccagaac
     2821 aaatctccca gctccgttga ggaaagcgat gatatgccac ccgaggatga tccagtgcat
     2881 tcagtggtaa cggtgtcatt gataacctct tctgctgctg aagtctcaag tgcaaccgcg
     2941 acttccggaa acgattctcc tgccaccata tcggtctctg tgttcacgcc ttccttttca
     3001 ggcgactgtg tgtcagtgtt cgtcagccct cccagaatcg acatgacctg aagaacatct
     3061 ggatctgttt cagcagtagg ctgcccttcc ccacgttcag gcttagcatc agaatcaagg
     3121 gaagataaaa ggacagtagt ctcctgccct ccatcaacca tgacagggac atcaggagga
     3181 gttgtagaag aacctttcct caacacggga gctactgtcg cggcagggtt tagtatctct
     3241 gctaattcag aagtctgctc ttcctgtgca atgggaaaac caagaggtat ccctccggca
     3301 tgcacaatgg cctcattaac gatatccgta atatccattg catcactgta acgtccgctt
     3361 atgaaagcca gcaatgttct cagaatatca gggtttttac ccagccactg aagaaccggt
     3421 tctggcaaaa atctgagagc gatcaattca ccataaacct gagcacctgc tatatcgggt
     3481 tctgctttaa aacgaaaacg ataaggttct tccggaacac ttaatcccgg gcgccataca
     3541 gcaccactac ggagctcgcc ttcaatattc cataagcgcc ccaacgagtg gaataatgca
     3601 gcgtaataaa cgacagcact ccagctgact gactgcgcgg attgttcctc tgcagatgca
     3661 cctcggggca gcatatatcc ttttgataaa cgtacggcaa agaccgtcgt ctgtatgacg
     3721 taatccacca tgccgtctgt ataggcaaat tttccctgag ccgaagccgg gagtctctga
     3781 cataaaccca caacgccgtg taaagggagt aaaaaataac gttcaaaacg ctctttaggt
     3841 agcgcgctgt tctcccacaa aatccttaac cattgctgcc gtcgttcatg ctgtaacaaa
     3901 tctgaaatgg ccgcagggtt aaaatatcca tccgtacagg gaataagtct cttcttcgca
     3961 tttcccgatt tattttcttc tatctgtctg aagtttttct tctccatcca tgacttaact
     4021 ttccggaaca tattcagtcc cttttttatc gttttctgta ctcacttctg actcacccga
     4081 tttatccgca gaagttccgg ctatatcttc agcccggggc tggatcagaa gctcgtgcaa
     4141 tatcggatcg gttataagca ctttacgcgc ccgggtggct gccacataca tgaggttaat
     4201 ttcatcctgc cgctgacttt ccggcatgtc aggatccaga atatcgagaa agtcatcatg
     4261 taacttcacc ctgtcccatt cgagcccctt actcctgtgt gctgtacata ccgtcacatc
     4321 agcttcagat tcactgatga cgcgttgctc acgtaacgta ttcagtctgt ccggtaacgg
     4381 aaaaaactgt tcaagaataa atatcccctg cttcatctcc acatcaccgg tatcttcggc
     4441 tatctgcaga tattcatcat agtcccggta ttcacgggtc agcctgtcgt gtcgcatacg
     4501 ctccgacata tcaattgaga accagtacag atccagtaaa tcctcaattc tgtagctttc
     4561 cataccacca acccagaata ctttcctgcc agccagcgac cagtgcagtg ccgtccggat
     4621 gacaccacag acagatcggt gaagaacagc atgatggcca aaattccgcg gcattgtgag
     4681 cagaacacgg cctgcgcccc cctttccagt tatctgatgc gtttcgccct tcagggccag
     4741 cagcctgttg gccaccccgg ctacctccgg accgaagcga aagctgtggg ttagccaaag
     4801 acggtctgag ttctccagtt gcggagcctg catggcatta tccgccccac gaaagcggta
     4861 gatttgctga tgagtatctc caaccagaac tacccggcag gtctggttga gcacaatggc
     4921 gctgatgaca ggattggcat cctgagcttc atcaaacaat aacgtggtat agcgggaaga
     4981 aagattcggt ttgctcaact ggtaaagctt tagataagta tcatgggtga ccggaaaatc
     5041 cccctgacgg gccgacatca ttgcccagat tttctttgct gaaaacagga tttgacctgg
     5101 ttgtagcccc ttacagtcgt caggatcagg catgtgttca ggcgtaatat cggtggccgc
     5161 gctgcatata aagcgattca gaacatcaag cgtcagtctg gccagcaacc agttgcggga
     5221 gtttagcgcc cgggcgacat aggtcagtcg tagtgaatta atcagacgat gactgtaatg
     5281 tttcccgacc gtcggccagg ccagttgatg cgatgttttg caggtaacgt tgaaggggaa
     5341 tttctgctcc gcctcatccc gaatggcacg gttataagca atatagagca ttcgttccgt
     5401 tggattttcc tcagcataac gacgaagtgt ggtggttttg ccactcccgg caaaagcaca
     5461 gacaaccaga cgttcgccct tccatgcgat gacagcagcc tgttcaggag tatcagtgtg
     5521 gggcataatc gggctccgga taaaagcatt ttgctcatcc tgagaacccg ccagactgtt
     5581 atccagtgca atttataaat ccaaaaaaaa gaattctgca aaccagccct gtaccatcaa
     5641 gttcatatcc tcagcggagg aaatgcgtga aatccagcgc aacacacgga gtatcaccca
     5701 ctacccaggc atcatgattc tcagaaacct caaatgcttc gccggcatga ataaggtatt
     5761 catttccgaa gcagtcacgc accatcattt caccggaaat tataaaacca gtatgacgtt
     5821 ctgacggttt tccggtcatt attaatgggt gactctaatg caaacatcta gcgagaaaat
     5881 attttgtaga catcgtcaac ggaaaagtta actaacaata gtcattatcc atatctttaa
     5941 tttgaaatgg aaacagggca aagagtaatt aaa
//
LOCUS       DAJVSD010000257         5948 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.257, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000257 DAJVSD010000000
VERSION     DAJVSD010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5948)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5948)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5948
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.257"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            275..1204
                     /locus_tag="OQP62_003900"
     CDS             275..1204
                     /locus_tag="OQP62_003900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462239.1"
                     /note="This family includes YhcC from E. coli K-12, an
                     uncharacterized radical SAM protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01212 family radical SAM protein"
                     /protein_id="HCS1723320.1"
                     /translation="MQLQKLVNMFGGDLLRRYGQKVHKLTLHGGFSCPNRDGTIGRGG
                     CTFCNVASFADEAQQHHSIAEQLAHQAHLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQ
                     QAVSQASIVGLCVGTRPDCVPQAVVDLLCEYKDQGYEVWLELGLQTAHDKTLRRINRG
                     HDFACYQRTTRIARERGLKVCAHLIVGLPGEGQAECLQTMERVVETGVDGIKLHPLHI
                     VKGSTMAKAWEAGRLNGIELDDYTLTAGEMIRHTPPEVIYHRISASARRPTLLAPLWC
                     ENRWTGMVELDKYLNEHGVQGSALARPWIPPVA"
     gene            1297..3633
                     /gene="arcB"
                     /locus_tag="OQP62_003901"
     CDS             1297..3633
                     /gene="arcB"
                     /locus_tag="OQP62_003901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobic respiration two-component sensor
                     histidine kinase ArcB"
                     /protein_id="HCS1723321.1"
                     /translation="MKQIRMLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTM
                     VLHGQVESIDVIRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDL
                     KLNVQLKDNIAQLNQEIADREKAEAELQETFEQLKVEIKEREEAQIQLEQQSSFLRSF
                     LDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLKPEDVYSPEAAEKVIETDEK
                     VFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLMGFGRDITERKRYQDAL
                     ERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNI
                     FNDIIDMDKMERRKVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKV
                     ITDGTRLRQILWNLISNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKI
                     FAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPAV
                     AEEVEDAFDEDDMPLPALHVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFA
                     PGEYDLVLLDIQLPDMTGLDIARELTRRHTREDLPPLVALTANVLKDKKEYLDAGMDD
                     VLSKPLSVPALTAMIKKFWDATDKEESTVTPEESDKAQALLDIPMLEQYIELVGPKLI
                     TDGLAVFEKMMLGYLSVLESNLTARDKKGVVEEGHKIKGAAGSVGLRHLQQLGQQIQS
                     PDLPAWEDNVVEWIEEMKQEWQHDVAVLKAWVANAEKK"
     gene            3860..4513
                     /gene="elbB"
                     /locus_tag="OQP62_003902"
     CDS             3860..4513
                     /gene="elbB"
                     /locus_tag="OQP62_003902"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenoid biosynthesis glyoxalase ElbB"
                     /protein_id="HCS1723322.1"
                     /translation="MKKIGVVLSGCGVYDGTEIHEAVLTLLAIARSGAQAICFAPDKP
                     QADVINHLTGEAMAETRNVLIEAARITRGDIRPLSQAQPEELDALIVPGGFGAAKNLS
                     NFASKGSECRVDSDVVALAKAMHQSGKPLGFICIAPAMLPKIFDFPLRLTIGTDIDTA
                     EVLEEMGAEHVPCPVDDIVVDEDNKVVTTPAYMLAQDIAQAASGIDKLVSRVLVLAE"
     gene            4510..5238
                     /gene="mtgA"
                     /locus_tag="OQP62_003903"
     CDS             4510..5238
                     /gene="mtgA"
                     /locus_tag="OQP62_003903"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HCS1723323.1"
                     /translation="MSKRRIAPLTFLRRLLLRILAALAVFWGGGIALFSVVPVPFSAV
                     MAERQISAWLGGEFGYVAHSDWVSMADISPWMGLAVIAAEDQKFPEHWGFDVPAIEKA
                     LAHNERNESRIRGASTLSQQTAKNLFLWDGRSWVRKGLEAGLTLGIETVWSKKRILTV
                     YLNIAEFGDGIFGVEAAAQRYFHKPASRLSVSEAALLAAVLPNPLRYKANAPSGYVRS
                     RQAWIMRQMRQLGGESFMTRNQLN"
     gene            complement(5313..5945)
                     /gene="yrbL"
                     /locus_tag="OQP62_003904"
     CDS             complement(5313..5945)
                     /gene="yrbL"
                     /locus_tag="OQP62_003904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoP regulatory network protein YrbL"
                     /protein_id="HCS1723324.1"
                     /translation="MILLSKQTPLGAGRHRKCYTHPDNARRCIKVIYNRDHGGDKEIR
                     RELSYYAHLSRYLTDWSAIPRYYGTVETDCGTGYVYDMITDFNGAPSITLTEFAAQCR
                     YEEDVAVLRRLLKKLKRYLLDNHIVTMSLKPQNILCQRISESEVVPVVCDNLGESTFI
                     PLATWSTWCCERKLERVWQRFIAQPALAVALERDAQPKDKKRLALTSHEA"
BASE COUNT         1385 a         1402 c         1759 g         1402 t
ORIGIN      
        1 atctgacctt gctttttcaa aaatcttggc attttatgct gttttaagcg tgaacagcat
       61 tgaatgctac tgtttttatc gatgacccag cagacgctga aaaaagaggg gaatatcagg
      121 aaaaatcatc agcgggatta tgaatgaaat atcgtttatt ttgcttgatt atgcaatgga
      181 taaaagcctt ccgggacgat tgatccaggt catcgccaaa ggagactaaa aatggcaggc
      241 tttggcctct ttttaagagg cggtctatca gattatgcag ttacagaaat tagtcaatat
      301 gtttggtggg gatcttttac gtcggtatgg gcaaaaggtt cataagctga cgcttcatgg
      361 cggttttagc tgccctaatc gcgacggcac catcgggcgt ggcggttgca ccttctgtaa
      421 tgtcgcctct tttgccgatg aggcgcagca gcatcattcg attgccgagc agcttgcgca
      481 tcaggcgcat ctggtgaacc gcgctaaacg ctatctggcc tatttccagg cctacaccag
      541 cacctttgca gaagtgcagg tgctgcgttc catgtatcaa caggcggtca gccaggccag
      601 tatcgtcggg ttatgcgtcg gtacgcgtcc ggattgcgtc ccgcaggcag tagtagattt
      661 actgtgtgaa tataaagatc aaggctacga ggtgtggctg gaactgggat tgcaaaccgc
      721 gcacgataaa accctgcgcc gaattaaccg cgggcatgac ttcgcctgct atcagcgtac
      781 cacccggatt gcccgggagc gcgggctgaa agtgtgcgcg catctgattg tggggctgcc
      841 gggagaaggg caggcagaat gcctgcaaac catggagcgt gtggtggaga cgggcgttga
      901 cggtattaaa ctgcatccgc tgcatattgt gaaaggcagt acgatggcca aagcctggga
      961 agcggggcgg ctgaacggca tcgaactgga cgactacacg ctaacggcag gtgagatgat
     1021 tcgtcatacg ccgccggagg taatttatca ccgaatttca gccagcgctc gccgtccgac
     1081 gctgcttgcc ccgctgtggt gcgagaatcg ctggacgggg atggttgagc tggacaaata
     1141 cctgaatgag catggcgtgc agggctctgc gctggcccgt ccctggatac cacctgtagc
     1201 gtagcgtgat gagggggcta cgcatatttc gcacaatatt caacgcggtt cccataattg
     1261 ggtattatgt gcgaagttgt ggtgaaggaa tcctctatga agcaaattcg tatgctggcg
     1321 caatactatg tcgacctgat gatgaaattg ggtctggtgc gcttttccat gctcctggcg
     1381 ttggcattgg tggtgctggc gattgtcgtg cagatggcgg tgaccatggt gctgcatggt
     1441 caggttgaaa gtatcgacgt tattcgttcc atcttttttg gcctgttaat tacgccctgg
     1501 gcggtctatt tcttatccgt tgttgttgaa caactggaag agtcaaggca gcgactgtcg
     1561 cgtctggtgc aaaagctgga ggagatgcgc gagcgcgatc tcaagcttaa cgtacagttg
     1621 aaggacaata ttgcccagct taatcaggaa attgccgatc gcgaaaaagc ggaagcggag
     1681 ctgcaagaga catttgaaca gctaaaagta gaaattaaag agcgtgaaga ggcgcaaatc
     1741 cagctagaac agcaatcctc ttttctgcgc tcctttctgg acgcctcgcc ggatttggtt
     1801 ttttatcgta atgaggataa agagttttcc ggctgtaacc gcgcaatgga attgctaacc
     1861 ggcaagagcg aaaaacagct ggtgcatttg aagccggaag atgtgtactc tcccgaagcg
     1921 gcggagaaag tcattgaaac cgatgaaaaa gtattccgcc ataacgtctc cctgacctac
     1981 gaacagtggc tggattatcc ggacggacga aaggcctgct ttgaaattcg taaagtgcct
     2041 tattacgacc gtgtcggtaa acgtcatggc ctgatgggat ttggtcgtga tattaccgaa
     2101 cgtaagcgtt atcaggacgc gctggagcgc gccagtcgcg acaagaccac atttatctct
     2161 accatcagtc atgagctgcg caccccgctt aacggtatcg tcggtttaag ccgcatcctg
     2221 ctggataccg atcttaccgc cgaacaggaa aaatacctta agacaatcca tgtctccgcc
     2281 gtgacgttag gcaatatttt caatgatatc attgatatgg ataagatgga gcggcgtaag
     2341 gttcagcttg ataaccaacc ggttgatttc accagcttta tggccgatct ggaaaacctt
     2401 tccggtttgc aggcgcagca aaaagggcta cgttttgtgc ttgagccgac gctgccgctg
     2461 ccgcacaaag tcattaccga cggaacgcgt ctgcgccaga ttttatggaa tttgatcagc
     2521 aatgcggtga agtttactca gcagggccag gtgacggtgc gggcgcgcta tgatgaaggc
     2581 gacatgctgc actttgaagt ggaagattcc gggatcggca ttccgcagga tgagcaggat
     2641 aaaattttcg ccatgtatta tcaggtaaaa gacagtcatg gcggtaagcc ggcgacgggg
     2701 accggtatcg ggctggcggt ctcccgtcgg ctggcgaaaa atatgggcgg cgatattacc
     2761 gtttccagtc tgccgggcaa aggatcgacc tttacgctaa cggttcatgc gccagcggtg
     2821 gcggaagagg tggaggacgc ctttgatgaa gacgacatgc cgctgcccgc gctgcatgtt
     2881 ctgctggtcg aagatattga actgaacgtg attgtggcgc gttcagtact ggaaaaactg
     2941 gggaacagcg tggatgtcgc gatgaccggc aaggcggcgc tggagatgtt cgcgccaggc
     3001 gaatatgacc tggtcttact ggatattcag ctaccggata tgacgggtct ggatattgcc
     3061 agagaactga cccgtcgcca cacgcgggaa gatttaccgc cgctggtagc gcttacggct
     3121 aacgttctga aagataaaaa agagtatctg gacgctggta tggacgatgt gctgagtaag
     3181 ccgctgtcgg tgccagcctt aaccgcgatg attaaaaaat tctgggatgc caccgataaa
     3241 gaggagagta ccgtgacgcc tgaagagagc gataaagcgc aagcgctgct ggatatcccg
     3301 atgctggaac aatacatcga gttggttggg cctaaattga tcaccgacgg cctcgcggtg
     3361 tttgaaaaaa tgatgcttgg ctatttaagc gtgctggagt ccaatctgac ggcgcgtgac
     3421 aaaaaaggcg tcgttgagga agggcataag attaaaggcg ccgccggttc ggtagggctg
     3481 cgtcatctgc aacaacttgg ccagcaaatc cagtcgccgg atcttcccgc ctgggaagat
     3541 aatgtcgtgg aatggattga agagatgaag caggagtggc agcacgatgt cgcggtgctg
     3601 aaagcctggg tggcaaacgc ggaaaaaaaa tgaccccggt ttgaccgggg tgcgcgaata
     3661 ctgcgccaac accagggaaa tcgtggctgc gccgtgctta ttatgatgat gtcaaaggcg
     3721 cagtcctgtt ttcaggccgc acgcagttaa gatagcaaat cctaaatgat ttgttacatg
     3781 aatcatttaa atgtgtgaag cgtagcattt taatcaaaat tattaatggg cttgagtcgg
     3841 ttgcaggagg atgttcacca tgaaaaaaat tggcgtagtg ctcagcggat gcggcgtcta
     3901 tgacggcacc gaaattcatg aggccgttct gacgctgttg gccattgccc gcagcggcgc
     3961 gcaggctatc tgcttcgcgc cggataaacc acaagcggat gttattaatc acctgaccgg
     4021 cgaagctatg gcggaaacgc gtaacgtcct gattgaggcg gcgcgtatta cgcggggcga
     4081 tattcgtcct ctgtcccagg ctcagccaga ggaactggat gcgctcattg tgcctggtgg
     4141 tttcggcgcg gcgaagaacc tgagtaattt cgccagcaag gggagcgaat gccgggtgga
     4201 tagcgatgtc gtcgcgctgg cgaaggccat gcaccagtcc ggcaagccgc tgggattcat
     4261 ctgtatcgcg cccgcaatgt tgccgaaaat ctttgacttc ccgctacgtc tgacaatagg
     4321 gacggatatt gataccgctg aagtacttga agagatgggg gccgaacacg taccttgccc
     4381 ggttgatgat atcgttgtgg acgaggataa caaggtcgtg accacccctg cctatatgct
     4441 ggcgcaggat atcgcccagg cggcaagcgg cattgataaa ttagtgtcgc gcgtgctggt
     4501 tctggcggaa tgagcaaacg acgcatcgcg ccgttaacgt ttttgcgccg tctactttta
     4561 cgtatccttg ctgcgctcgc cgtcttttgg ggcggcggca ttgcgctgtt tagcgtggtt
     4621 ccggtgcctt tttcggcggt gatggcggaa cggcagatta gcgcctggct cggcggagag
     4681 ttcggttatg tggcgcattc tgactgggtc agtatggcgg atatctcgcc gtggatgggg
     4741 ctggcggtaa ttgcggcgga agaccagaag ttccctgagc actggggctt tgatgttccg
     4801 gcgattgaaa aagcgctggc gcataatgag cggaatgaga gccgtattcg cggcgcctct
     4861 acgctttcgc agcaaacggc gaaaaatctc tttttatggg atggacgcag ttgggtgcgc
     4921 aaaggtctgg aggccgggct aacgctgggc attgaaactg tctggagcaa aaagcgcatc
     4981 ctcacggttt atctgaatat cgcggagttt ggcgatggta tttttggcgt ggaggctgcg
     5041 gcacaacggt attttcataa acctgccagt cgcttgagtg tgtctgaagc cgcgttgctg
     5101 gcggcggtat tgccaaatcc gttacgctat aaggcgaatg cgccttctgg ctatgtgcgt
     5161 agccggcagg cgtggattat gcgccagatg cgccaactgg gcggggaatc ttttatgacg
     5221 cgcaaccagc ttaattaatt ttgccgattg gcggcgcgaa cgccttatcc ggcctgcgat
     5281 ctgtgtcgtc caggcctgat aagcacaggc cattaagctt cgtgagaagt aagcgccagc
     5341 cgtttcttgt cttttggctg cgcgtccctc tccagggcaa cggccagcgc aggctgggcg
     5401 ataaaccgct gccacactct ctccagtttg cgttcacagc accatgttga ccaggtcgcc
     5461 agcgggataa aggtactttc ccccagattg tcgcaaacca ccggaaccac ttctgactcg
     5521 ctgatacgct ggcacaggat attttgcggc ttcagcgaca tcgtcacaat atggttatcc
     5581 agcaggtaac gtttcagttt tttcagtagc cgccgcagga cagcgacatc ctcttcataa
     5641 cgacattgcg cggcgaactc ggtcagggta atagagggcg cgccgttgaa atcggtaatc
     5701 atgtcgtaga catagccggt gccgcaatcg gtttctaccg tgccgtaata acgggggata
     5761 gcgctccagt ccgtcaggta gcgggacaga tgcgcatagt agctcagttc acgccgaatc
     5821 tctttatcac cgccgtggtc acggttgtaa ataactttta tgcaacgccg ggcattatcc
     5881 ggatgcgtat agcatttacg atgtcgacca gcgcccagcg gagtctgttt ggataaaagg
     5941 atcatggc
//
LOCUS       DAJVSD010000258         5840 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.258, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000258 DAJVSD010000000
VERSION     DAJVSD010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5840
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.258"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..331)
                     /locus_tag="OQP62_003905"
     CDS             complement(<1..331)
                     /locus_tag="OQP62_003905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001047328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain containing protein"
                     /protein_id="HCS1723325.1"
                     /translation="MNLEKGGRGAIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD
                     SFPAEWVIQCALETGTSLNWLTTGHGSKQTSGNTNTMEVAKYVLSDGALREDGFYIFD
                     KGFLPSTF"
     gene            457..678
                     /locus_tag="OQP62_003906"
     CDS             457..678
                     /locus_tag="OQP62_003906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001247707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /protein_id="HCS1723326.1"
                     /translation="MRPNISITLTTPHVTIERYSELTGLSIDTINDMLADGRLICHRL
                     RKDKKREKVMINIAAMTVDALSECNLNLN"
     gene            711..1220
                     /locus_tag="OQP62_003907"
     CDS             711..1220
                     /locus_tag="OQP62_003907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage regulatory CII family protein"
                     /protein_id="HCS1723327.1"
                     /translation="MFDYQVSKHPHFDEACRAFALRHNLVQLAERAGMNVQILRNKLN
                     PAQPHLLTAPEIWLLTDLTEDSTLVDGFLAQIHCLPCVPINEVAKEKLPHYVMSATAE
                     IGRVAAGAVSGDVKTSAGRRDAISSINSVTRLMALAAVSLQARLQANPAMASAVDTVT
                     GLGASFGLL"
     gene            1228..1524
                     /locus_tag="OQP62_003908"
     CDS             1228..1524
                     /locus_tag="OQP62_003908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2724 domain-containing protein"
                     /protein_id="HCS1723328.1"
                     /translation="MLTKEPSFASLLVKQSPAMHYGHGWIMGEDGKRWHPCHSQDELL
                     SELTTRKRRKSKCMQRKVKWFISFVTEGRVIQYLKMICSVVIRRCRAMAVTFSR"
     gene            1642..1983
                     /locus_tag="OQP62_003909"
     CDS             1642..1983
                     /locus_tag="OQP62_003909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5347 domain-containing protein"
                     /protein_id="HCS1723329.1"
                     /translation="MAINGAAATVPLSPGERLNGLNHIAELRAKVFGLNIESELERFI
                     KDMRDPRDINNEQNKRALAAIFFMAKIPAERHSISINELTTDEKRELIKAMNHFRAVV
                     SLFPRRLTMPN"
     gene            2051..2284
                     /locus_tag="OQP62_003910"
     CDS             2051..2284
                     /locus_tag="OQP62_003910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2732 domain-containing protein"
                     /protein_id="HCS1723330.1"
                     /translation="MRNIETLSTKTGPDDAGLNILLTEARLEERRARAEAMVARLDSL
                     ACHITSRQLTHVEAAELLRVTAEAIQNEAQEIH"
     gene            2284..2511
                     /locus_tag="OQP62_003911"
     CDS             2284..2511
                     /locus_tag="OQP62_003911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HCS1723331.1"
                     /translation="MADAMDLVQQRVEEERQRHIRAARAKTPGVSRVLCIECEAPIPP
                     ARRRAIPGVQLCITCQEIAELKGKHYNGGAV"
     gene            2508..3365
                     /locus_tag="OQP62_003912"
     CDS             2508..3365
                     /locus_tag="OQP62_003912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000104187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HCS1723332.1"
                     /translation="MSTILKWAGNKTAIMSELKKHLPAGPRLVEPFAGSCAVMMETDY
                     PSYLVADINPDLINLYKKVAADCESFISRARVLFEIANREVAYYNIRQEFNYSTEITD
                     FMKAVYFLYLNRHGYRGLCRYNKSGHFNIPYGNYKNPYFPEKEIRAFAEKAQQATFIC
                     ASFDETLAMLQVGDVVYCDPPYDGTFSGYHTNGFTEDDQYHLASVLEYRSSEGHPVIV
                     SNSDTSLIRSLYRNFTHHYIKAKRSIGVSAGESKSATEIIAVSGARCWVGFDPSRGVD
                     SSAVYGVRA"
     gene            3362..5776
                     /locus_tag="OQP62_003913"
     CDS             3362..5776
                     /locus_tag="OQP62_003913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000017528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication endonuclease"
                     /protein_id="HCS1723333.1"
                     /translation="MSHADMNNCSGFNEAAAAFSWNSPKKAINPYLDLAEVAPVSALS
                     NLITLYAADNEQEQLRREALSDQVWERYFFNESRDPVQREMEQDKFISRAKLAHEQQR
                     FNPDMVILADVNAQPSHISRPLMQRIEYFSSLGRPKAYSRYLRETIKPCLERLEHVRD
                     SQLSTSFRFMASHEGLDGLLILPEMSQDQVKRLSTLVAAHMSMCLDAACGDLYATDDV
                     KPEEIRKTWEKVAAETLRLDVIPPAFEQLRRKRNRRKPVPYELIPGSLARMLCADWWY
                     RKLWKMRCEWREEQLRAVCLVSKKASPYVSYEAMMHKREQRRKSLEFFRSHELVNEDG
                     DTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAEMRGDCAVFYTITCPSRFHSTLNN
                     GRPNPTWTNTTVRQSSDYLVGMFAAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCF
                     MRKKDRRTITALLRKFAIREDREELGNNTGPRFKSELINPRKGTPTSYIAKYISKNID
                     GRGLAGEISKETGKSLRDNAEYVNAWASLHRVQQFRFFGIPGRQAYRELRLLAGQAAR
                     QQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMKQGGVLVPRKYHLIRTAYEINEEP
                     TAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQGACAPWTRGNNCP
                     LAENLNQHEKDKSADGDTRTDITCMDDKELHDYLHSMGKKEHRELAARLRLVKPKRRK
                     DHKQRITEHQRQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGLRIFYRNQRLQEDD
                     KWRDLY"
BASE COUNT         1537 a         1361 c         1516 g         1426 t
ORIGIN      
        1 taaacgtaga gggtagaaat cccttatcaa aaatataaaa accgtcttca cgcaaggcac
       61 catcagataa tacatattta gcaacttcca tagtatttgt attacctgaa gtttgctttg
      121 aaccatgtcc ggttgtgagc caattaagcg aggtgcccgt ttcaagggcg cactggatta
      181 cccattctgc tgggaatgag tcacgcatgt agcgtgtggc gagtgtactt ttagagattc
      241 ctaaatgatc gcacaacgcc tgtcgagttt tgaatccata agcttctacc atgcgctcta
      301 tagcgcctcg tccgcctttc tccaaattca tggtcactcc aagtgaactt ttatcttgac
      361 gatttcattg cgcgatcgta tgtttatggt gttcacaaaa tacaaacgat ccgtattcgt
      421 cctgattaat catcattaaa cgaggaatgt tgcatcatga gacctaacat ttcaatcact
      481 cttaccacgc ctcatgtgac tattgagcgc tatagcgagc tgacagggct gtccatcgat
      541 accatcaatg acatgttggc tgacggacgc cttatctgtc accgtttgcg caaagataaa
      601 aaacgcgaaa aagtgatgat caacatagca gccatgaccg ttgatgcgct ttcagaatgc
      661 aatctaaacc ttaattagtt cgattctgaa atacatcaga ggcattgacc atgtttgatt
      721 accaagtttc caaacatcca cattttgatg aagcctgtcg tgcatttgca ctgcgccaca
      781 atctggtgca actggcagaa cgtgcaggca tgaatgtgca gattctgcgg aacaagctga
      841 acccagctca gcctcatcta ttaaccgcac cagaaatctg gctgcttacc gatctgactg
      901 aagattcaac gctggtagat ggttttctgg cacagattca ttgtctgcca tgtgtaccga
      961 ttaatgaggt ggcaaaagag aaactgccac attacgtcat gagtgcaacc gcagagatcg
     1021 ggcgtgttgc tgcaggtgcg gtatctggcg atgtaaaaac cagtgcaggt cgtcgtgatg
     1081 ctatcagcag cattaactct gtaacacgac tgatggcgtt ggctgctgtt tcattgcagg
     1141 cccgtttaca ggctaaccct gcgatggcga gtgcagttga taccgtgacc ggcctcggtg
     1201 cttcattcgg tttgctgtga ggtgcttatg ctgacgaaag aaccatcatt tgcatcgctg
     1261 ctggtaaagc aaagcccggc aatgcactac ggtcacggct ggatcatggg tgaggatgga
     1321 aaacgctggc atccatgtca ttcacaagat gaattgctgt ctgaattgac cacgaggaaa
     1381 cggagaaagt caaaatgtat gcagcggaaa gtgaagtggt ttatcagttt tgttacagag
     1441 gggagagtta ttcagtacct gaagatgatt tgctctgttg ttatccgtcg ttgtcgggcg
     1501 atggcagtta ctttttcacg ctaaaggatg ggacgttttt acggggagag caggttaaag
     1561 agacggtacg aaaaaatgta tctccctttg agcgttaccg taagaacaaa gaacgatagg
     1621 tgcgtttggg ggatatgaag tatggcaatt aatggcgctg cggcgactgt tccattaagc
     1681 cccggagaac gcctgaatgg acttaatcac attgcggaat taagggcgaa agtatttggc
     1741 ctgaatattg agtcagagct tgagcggttt attaaagata tgcgtgatcc acgggatatc
     1801 aataacgaac aaaataaacg ggcactggct gccatattct ttatggcaaa aattccagct
     1861 gaacgtcata gcatcagcat taatgagctg accactgacg aaaagcggga gttgattaaa
     1921 gcaatgaatc attttcgtgc agtggtgagc ttatttccca gacggctaac catgccgaat
     1981 taaccaacta atgaaattaa tggcgtaaac ccgccgggca tccctttatc taaattcagg
     2041 agaattgatt atgcgtaata ttgaaaccct ctcgaccaaa accggaccgg atgacgcagg
     2101 gcttaatatt ttactgacag aggctcgtct ggaagaacgc cgggcaaggg ctgaagcaat
     2161 ggtagctcgc cttgatagcc tggcgtgtca tatcacatcc cgccagctaa cccacgtcga
     2221 agcggcagaa ctgcttcgtg tgactgctga agcaatccag aacgaagcgc aggagatcca
     2281 ctaatggctg atgcaatgga tctcgtacag cagcgcgttg aagaagaacg ccaacgccat
     2341 atccgtgctg cccgtgccaa aacgccgggc gtgtcccgcg tgctttgcat tgagtgtgaa
     2401 gcgccaattc cgccagcacg ccgccgtgcc attccgggtg tgcagctttg cattacctgt
     2461 caggaaatcg cagagctgaa aggcaaacat tacaacggag gtgctgtatg agcaccatcc
     2521 tgaaatgggc gggaaataaa actgccataa tgtccgaact gaaaaaacat cttcctgctg
     2581 gcccgcgact ggttgaacct ttcgcgggtt cctgtgctgt gatgatggag acggattatc
     2641 ccagctatct ggttgcggat attaatcctg atttaatcaa cctctataaa aaggttgccg
     2701 ctgattgtga atcgtttata tctcgcgcca gagttttatt tgagatcgca aacagggagg
     2761 tggcttatta caacataagg caggagttta attactcaac tgaaattact gatttcatga
     2821 aagcggtata tttcctgtat ctcaatcgtc atggttaccg tgggttatgt cgttataaca
     2881 agagcgggca tttcaacatt ccatacggta attataaaaa tccgtatttc cctgaaaaag
     2941 aaattcgcgc atttgcagag aaagcccagc aagcaacgtt tatctgcgcc agctttgatg
     3001 aaacgctggc gatgctgcag gtgggggatg tggtgtattg cgatccgcct tatgacggta
     3061 cgttttccgg ctatcacact aacggcttca ctgaagatga ccagtatcac ctggcatctg
     3121 ttcttgaata tcgatcatca gaaggtcatc cagtcattgt ttctaacagt gacacatccc
     3181 tgatccgttc gctgtatcga aatttcactc accactacat caaggcaaaa cgcagcatcg
     3241 gcgtgtcggc tggcgagagt aaatctgcaa cagaaatcat cgctgtttct ggggcgcgct
     3301 gctgggtggg atttgatcct tcgcgtggcg tggatagttc tgccgtgtac ggagtgcgtg
     3361 catgagccat gctgatatga acaactgcag cggctttaac gaggccgccg cagcattctc
     3421 atggaacagc ccgaaaaagg ctattaaccc ttatctggac ctggcggaag ttgcgccggt
     3481 ttctgcgctt tcaaacctga tcactctgta cgctgccgat aacgagcagg aacaactgcg
     3541 ccgcgaggca ctgagtgatc aggtttggga gcgttatttc tttaatgaat cccgtgatcc
     3601 tgtccagcgc gaaatggagc aggataagtt cattagccgg gcaaagttgg cgcatgagca
     3661 gcagcgtttt aacccggaca tggtcattct ggcagacgtt aacgcccagc cttcccatat
     3721 cagcaggccg ctgatgcaac gtattgaata cttcagcagc cttggcaggc caaaggctta
     3781 ttcccgctat ttacgtgaga cgattaagcc atgtctggaa cggctggagc atgtacgcga
     3841 cagtcagcta tccacttctt ttcgctttat ggcaagccat gaagggctgg acggcctgct
     3901 gattctgcct gaaatgagtc aggatcaggt gaaacgcctg tccacccttg ttgctgcgca
     3961 tatgagcatg tgccttgatg cagcttgtgg cgatttgtat gccaccgatg acgttaagcc
     4021 agaagaaatc cgcaagacat gggaaaaggt ggcagcagaa accctgcgac tggatgtcat
     4081 accgcctgcg tttgagcaac tccgccggaa aagaaaccgc cgtaaacccg tgccctatga
     4141 actcattccg ggttcgctgg cgcgtatgtt gtgcgccgat tggtggtacc ggaaattatg
     4201 gaagatgcgt tgcgaatggc gggaagagca gttgcgtgct gtttgcctgg tcagcaaaaa
     4261 agcatctccc tatgtcagct atgaagccat gatgcataaa cgtgagcagc gccgtaagtc
     4321 gctggagttt ttccgttctc atgaactggt gaacgaagac ggcgacacgc tggacatgga
     4381 ggatgtggta aacgccagca gcagcaaccc tgcgcatcgc cgcaatgaga tgatggcctg
     4441 tgttaaaggt ctggagctta tcgcggaaat gcgcggtgac tgcgccgttt tctacaccat
     4501 cacctgtccg tcacgtttcc attccacgct aaataacggc aggcccaacc cgacctggac
     4561 aaatacgacg gtaagacaaa gcagtgatta tctggtcggc atgtttgctg catttcgtaa
     4621 ggcgatgcac aaagccggat tgcgctggta tggcgtgcgg gtggctgagc cgcatcatga
     4681 cggtacagtt cactggcacc tgttgtgttt tatgcgcaaa aaagatcgcc gcaccattac
     4741 tgctttgttg cgtaagtttg ccattcgtga agaccgcgag gagctgggta ataacacggg
     4801 accacgcttt aagtctgagc tgataaaccc gcgcaaaggt acgccaacaa gctacatcgc
     4861 gaaatacatc agtaagaaca ttgacgggcg tggtctggct ggcgagatca gcaaggaaac
     4921 gggtaaatcc ctgcgtgata acgctgaata cgttaatgcc tgggcgtctc tgcatcgtgt
     4981 tcagcaattc cgcttctttg gcattccggg gcgtcaggct taccgtgaac tgcgattgct
     5041 ggctggtcag gcggcaaggc aacaggggga caaaaaagca ggtgcgccgg tactggataa
     5101 cccgcgcctt gatgcaatcc tggctgctgc tgatgctggt tgttttgcca cctacatcat
     5161 gaagcagggc ggcgtactgg ttccccgcaa atatcacctc atcagaactg cttatgaaat
     5221 caacgaagaa ccgaccgcat atggcgatca cggtattcgt atttatggca tctggtcacc
     5281 cattgcagag ggcaagatct gcactcatgc ggtgaagtgg aaaatggttc gtaaggccgt
     5341 tgacgttcag gaggcggcag ccgaccaggg cgcttgcgcc ccttggactc gtggcaataa
     5401 ctgtcccctt gctgaaaatt tgaaccaaca tgagaaagat aaatcagcag atggggatac
     5461 cagaacggac attacctgca tggatgacaa ggaattgcac gattacctgc acagtatggg
     5521 caaaaaagag caccgggaac tggcagcaag attacgcctg gttaaaccga aacggcgtaa
     5581 agaccacaaa cagcgaatta cagagcatca gcgtcagcag ctcgtctatg aactgaagtc
     5641 cagaggattt gatggcagcg agaaagaagt cgatttactg cttcgtggcg gcagtattcc
     5701 gtcaggagca ggcctgcgta tcttctatcg gaaccagcgt ttgcaggaag atgataagtg
     5761 gcgggatctg tattaattac gcgggttaac aattcgtgct cttaataata ccaggcatat
     5821 caggctgatg aacgtaaaaa
//
LOCUS       DAJVSD010000259         5820 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.259, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000259 DAJVSD010000000
VERSION     DAJVSD010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5820
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.259"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            174..1388
                     /gene="alaA"
                     /locus_tag="OQP62_003914"
     CDS             174..1388
                     /gene="alaA"
                     /locus_tag="OQP62_003914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine transaminase AlaA"
                     /protein_id="HCS1723334.1"
                     /translation="MSPIEKSSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNPA
                     PFGFEAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGN
                     GVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDD
                     IRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVNIAREHNLIIFADEIYDKILYDDA
                     EHHSIAALAPDLLTITFNGLSKTYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLASMRL
                     CANVPAQHAIQTALGGYQSISEFILPGGRLYEQRNRAWELINDIPGVSCVKPRGALYM
                     FPRIDAKRFNIHDDQKMVLDFLLQEKVLLVQGTAFNWPWPDHFRIVTLPREDDLEMAI
                     NRFGRFLSGYHQ"
     gene            1482..2081
                     /gene="yfbR"
                     /locus_tag="OQP62_003915"
     CDS             1482..2081
                     /gene="yfbR"
                     /locus_tag="OQP62_003915"
                     /EC_number="3.1.3.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-deoxynucleotidase"
                     /protein_id="HCS1723335.1"
                     /translation="MKQSHFFAHLSRMKLINRWPLMRNVRTENVSEHSLQVAMVAHAL
                     AAIKNRKFGGQLNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQ
                     KLVDMAPDELHDIFAPLIDENAWSKEEQAIVKQADALCAYLKCLEELSAGNNEFRLAK
                     TRLEKTLELRRSQEMDYFMAVFVPSFHLSLDEISQDSPL"
     gene            complement(2173..3999)
                     /locus_tag="OQP62_003916"
     CDS             complement(2173..3999)
                     /locus_tag="OQP62_003916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HCS1723336.1"
                     /translation="MNGELIWVLSLLAIAVVLFATGKVRMDAVALFVIVAFVLSGTLT
                     LSEAFSGFSDPNVILIAALFIIGDGLVRTGVATVVGTWLVKMAGSSEIKMLVLLMITV
                     AGLGAFMSSTGVVAIFIPVVLSVSMHMQTSPSRLMMPLSFAGLISGMMTLVATPPNLV
                     VNSELLREGLHGFNFFSVTPLGVVVLALGIVYMLVMRFMLKGDAPGQQAGKRRTFRDL
                     IREYRLTGRARRLAIRPGSPMVGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVNGV
                     SEFRARDVLLIDMSAAEVDLREFCAEQLLEPMVLRGEYFSDQALDVGMAEISLIPKSE
                     LIGKSVREIAFRTRYGLNVVGLKRDGVALEGSLADEPLLMGDIILVVGNWKLISLLGQ
                     KGRDFVVLNMPVEVSEASPAHSQAPHAIFCLVLMVALMLTDEIPNPSAAIIACLLMGK
                     FRCIDAESAYKAIHWPSIILIVGMMPFALALQKTGGVSLVVQGLMDIGGGYGPYMMLG
                     CLFVLCAVIGLFISNTATAVLMAPIALAAAKSMGVSPYPFAMAVAMAASAAFMTPVSS
                     PVNTLVLGPGNYSFSDFVKLGVPFTLIVMAVCIVMIPMLFPF"
     gene            complement(4075..4752)
                     /locus_tag="OQP62_003917"
     CDS             complement(4075..4752)
                     /locus_tag="OQP62_003917"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461276.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphatase"
                     /protein_id="HCS1723337.1"
                     /translation="MPEEAHVQCKGFLFDLDGTLVDSLPAVERAWCSWADRFNLAHDE
                     VLGFIHGKQAITSLRHFMAGKSEAEIAAEFTRLEQIEATETAGITALPGAVDLLNHLN
                     KAGIPWAIVTSGSMPVARARHQVAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLA
                     PQECVVVEDAPAGVLSGLAAGCHVIAVNAPADTPRLADVDFALDSLTQLSVAKQPNGD
                     VVVLRKT"
     gene            complement(4745..5239)
                     /locus_tag="OQP62_003918"
     CDS             complement(4745..5239)
                     /locus_tag="OQP62_003918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007371080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfbU family protein"
                     /protein_id="HCS1723338.1"
                     /translation="MEMTNAQRLILSNQYKMMTMLDPTNAERYRRLQTIIERGYGLQM
                     RELDREFGELTEETCRTIIDIMEMYHALHVSWTNLKDTQAIDERRVTFLGFDAATEAR
                     YLGYVRFMVNIEGRYTHFDAGTHGFNAQTPMWEKYQRMLNVWHACPRQYHLSANEINQ
                     IINA"
     gene            complement(5322..5777)
                     /locus_tag="OQP62_003919"
     CDS             complement(5322..5777)
                     /locus_tag="OQP62_003919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF412 domain-containing protein"
                     /protein_id="HCS1723339.1"
                     /translation="MSTPDNRSVNFFSLFRRGQHYAKTWPMEKRLAPVFVENRVIRMT
                     RYAIRFMPPVAVFTLCWQIALGGQLGPAVATALFALSLPMQGLWWLGKRSLTPLPPSI
                     LNWFYEVRGKLQEAGQALAPVEGKPDYQALADTLKRAFKQLDKTFLDDL"
BASE COUNT         1486 a         1646 c         1439 g         1249 t
ORIGIN      
        1 gaaaatgcat ctaaccaaat gattttatga agttttaaac agtacgaaag cgcgttaaaa
       61 ataaacaaaa tcttcttctg ttcactcttc aaaactcacc gtcgtgggag tacattgttt
      121 cgtgctgact tccacggcag ggagtggcaa taacagctaa aaggtcaaga ttcatgtccc
      181 ccattgaaaa atccagcaaa ctcgaaaatg tctgttatga cattcgtggc cccgttctga
      241 aagaagcgaa acgccttgag gaagaaggta ataaagttct taaactgaat atcggcaacc
      301 ccgccccctt cggattcgaa gcgccggacg aaattctggt cgatgtcatt cgtaatttgc
      361 cgacggcgca aggatattgc gactcgaaag ggctttattc cgcccgtaaa gcgattatgc
      421 agcattatca ggcccgtgga atgcgcgatg taaccgtgga agatatctat atcggtaacg
      481 gcgtttccga gctgatcgtt caggcgatgc aggcgttgct taacagtggc gatgaaatgc
      541 tggttcccgc gcccgattat ccgttatgga cagcagcggt atcgctctcc agcggcaagg
      601 cggtacatta tctttgcgat gaatcttccg actggttccc ggaccttgac gatatccgcg
      661 ccaaaatcac cccacgtacg cgtggtattg tcattattaa tccaaacaac cctactggcg
      721 ccgtctattc taaagaattg ttgatggaaa ttgtcaacat tgcgcgcgag cataatctca
      781 tcatcttcgc cgatgaaatt tatgacaaga ttctctatga cgatgccgaa catcactcta
      841 tcgccgcact ggcgcctgat ctgctgacca tcacctttaa tggtttgtct aaaacctatc
      901 gcgtcgccgg cttccgccag ggctggatgg tgctgaacgg gccgaaaaaa catgcgaaag
      961 gctatattga agggctggag atgttagcct caatgcgcct gtgcgccaac gtcccggcgc
     1021 aacatgctat tcagaccgcg ctcggcggct atcaaagcat tagcgaattt attctgccgg
     1081 gcggtcgact gtatgaacag cgtaaccgcg cctgggagtt gattaacgat attcccggcg
     1141 tttcctgcgt aaaaccgcgc ggcgcgttgt acatgttccc caggatcgac gctaaacgtt
     1201 ttaatattca cgacgaccag aagatggtgc tggacttcct gctacaggaa aaggtgctgc
     1261 tggtgcaagg taccgccttt aactggccgt ggccggatca cttccgcatt gtgacgctac
     1321 cgcgtgaaga tgacctggag atggccatca accgctttgg gcgtttcctc tcaggctacc
     1381 atcaataatc ttaaattcag gctacttcgg tagcctgaat tgcatcttca tcaccctccc
     1441 cgcacaatga agtctgccgc agtgaaaaca aaaggtaatc tatgaagcag agccattttt
     1501 tcgcccatct ctcccgcatg aagttgatta accgctggcc gctgatgcgt aacgtgcgta
     1561 cggaaaacgt ctccgaacat agtctgcagg tggcgatggt cgcccatgcg ttggcggcga
     1621 taaaaaaccg taaatttggc ggccagctca atgctgaacg catcgcgctt ctggcgatgt
     1681 atcatgatgc ctcggaagta ctgaccggcg atctgccaac gccggtaaaa tattttaatt
     1741 cccagatagc tcaggaatat aaagcgatcg aaaaaatcgc ccagcaaaag ctggttgata
     1801 tggcgccgga tgaattacac gatattttcg caccgcttat tgatgagaat gcctggagca
     1861 aagaagaaca ggcaatcgta aagcaggccg atgcgctttg cgcctacctg aaatgcctgg
     1921 aggagctctc agcgggaaat aatgagttta gactggcaaa aacgcggctg gaaaaaacgc
     1981 tggaattacg tcgcagccag gagatggact attttatggc ggtgttcgtg ccaagtttcc
     2041 atctctctct tgacgagata agccaggatt caccgcttta gttgccggat ggcggctaac
     2101 gccttatccg gcctaccgtt cttcccgtag gcctgataag cgtagcgcca tcaggccttt
     2161 tccagcctgg ggttaaaacg gaaacaacat cggaatcatc acaatacaaa ccgccatcac
     2221 aataagcgtg aacggcacgc caagcttcac aaaatcgcta aagctatagt ttcccggccc
     2281 cagaaccaga gtattgaccg gcgatgaaac cggcgtcata aaggcggcgg atgccgccat
     2341 cgctactgcc atcgcaaacg gatagggcga cacccccatc gatttcgccg ccgccagcgc
     2401 aatcggcgcc atcagcaccg ccgttgccgt gttagaaatg aacagtccta tgacggcgca
     2461 cagcacgaac aggcatccca gcatcatata cggcccatag ccgccgccga tatccattaa
     2521 cccttgcacg accagagaga cgccgccggt tttttgcaac gccagcgcaa acggcatcat
     2581 acccacaatc aagataatac tcggccagtg gatcgcttta tacgcgcttt cagcatcaat
     2641 acagcgaaat ttccccatca gcaggcaggc gataatcgcc gcgctcggat tgggaatttc
     2701 atcggtcaac atcagcgcca ccatcagtac caggcagaaa atggcgtgcg gcgcctggct
     2761 gtgcgccggc gaggcttcgc tgacctcgac cggcatattc agcaccacaa agtcgcggcc
     2821 tttttgcccc agcaggctga ttaacttcca gttccccacg accagaatga tatcgcccat
     2881 caataacggt tcatcggcca gcgacccttc cagcgcgacg ccgtcgcgtt tcaggccgac
     2941 cacattcagc ccgtaacgtg tacggaaggc gatttcacgc accgacttgc ctatcagttc
     3001 agacttcgga ataagcgaaa tttccgccat gccaacatcc aacgcctgat cggaaaaata
     3061 ttctccacgc aataccatcg gttccagcag ttgctcggcg cagaactctc tgaggtcaac
     3121 ctccgccgcc gacatatcaa tcagcagaac gtcgcgagcg cgaaactccg atacgccgtt
     3181 cacattgacg ataacccgcc gaaagcgccg ccagcgttca acgccgatga cattggcgcc
     3241 gtaacgttcg cgcagtttaa ggtcgtccag ccgctgtccc accatcggcg aaccggggcg
     3301 aatcgccaga cgacgcgcgc gccccgtcag acggtactcg cggataagat cgcggaaagt
     3361 gcgacgctta ccggcctgtt gtccgggcgc atcgcctttt agcatgaagc gcatcaccag
     3421 catataaaca atgccgagcg ccaacaccac tacccccagc ggcgtcacgc taaaaaagtt
     3481 gaacccgtgc aggccttcac gcagcagttc actgttaacc accaggttcg gcggcgtcgc
     3541 caccagcgtc atcattccgc tgataagccc ggcaaaactc agcggcatca tcaggcgcga
     3601 aggcgaggtc tgcatatgca tagaaacgct aagaacaacg gggataaaaa tcgccaccac
     3661 gccggttgaa ctcatgaaag caccaagtcc ggcgacggtg atcatcagta aaaccagcat
     3721 cttgatttca ctgctgcccg ccattttaac cagccaggta ccgaccaccg tcgcaacgcc
     3781 ggtgcgcacg aggccgtcgc caataataaa taaggcggcg ataagaatga cattcggatc
     3841 gctaaagccg gagaaggctt ccgaaagggt caaggtaccg ctaaggacaa aagcaacaat
     3901 gacgaataaa gccaccgcat ccatacgtac tttgcccgtc gcaaacaaca cgacggcaat
     3961 cgccagtaaa gagagaaccc aaatcaattc accgttcaca acatatcctt gtcagatgag
     4021 aagataacgt gattctgcca taaatatgcc ccgccagggc ggggcatatc atgatcaggt
     4081 ctttcttaac accaccacat cgccgtttgg ttgtttagcg accgataatt gcgtcaggct
     4141 atccaacgca aaatcaacat ccgccagacg cggcgtgtcg gccggcgcat tgaccgcaat
     4201 gacgtggcag cccgcagcca gtccggacag cacgccagcc ggggcatctt ctactacgac
     4261 gcactcctga ggggccaggc caagcagttg tgcgcccagc aaatacgcat ccggctccgg
     4321 tttgccgcgt ttgactcgtt cggcggtgac aaacacctct ggcgctggaa ggcccgcgac
     4381 ctgatggcgc gcacgcgcga ccggcattga accggaggtg acgatagccc acggaatgcc
     4441 cgctttattc aggtgattga gtaaatcgac tgcccccggc aacgcggtga tccctgcggt
     4501 ttcagtggct tctatttgct ccaggcgcgt aaactcagcg gcaatttccg cctccgattt
     4561 acccgccata aaatgccgca acgaggtgat cgcctgtttg ccatgaataa agcccagcac
     4621 ctcatcatga gcaaggttaa aacgatcggc ccagctacac cacgcgcgtt cgacggcagg
     4681 taatgagtca accaacgttc catccagatc aaacagaaaa cctttacact gcacgtgagc
     4741 ctcctcaggc attaatgatt tgattgattt cattcgcgct caggtggtac tgacgcgggc
     4801 aggcatgcca gacattcaac atccgctggt atttttccca catcggcgtc tgggcattaa
     4861 agccgtgcgt cccggcgtca aagtgagtgt agcgtccttc tatattcacc ataaaacgga
     4921 catagccgag gtaacgcgct tccgtcgcgg cgtcaaaccc caggaaggtg acgcgacgtt
     4981 cgtcgatggc ttgcgtatct ttgaggttgg tccaggagac gtgcagcgca tggtacatct
     5041 ccataatatc gatgatggta cgacaggtct cttccgtcag ctcgccaaac tcgcgatcca
     5101 gctcgcgcat ctgcaggccg tagccgcgtt caataattgt ttgtaagcga cggtaacgct
     5161 cggcgttggt gggatcgagc atcgtcatca ttttgtactg gttagacaaa atcagacgtt
     5221 gcgcgttggt catttccatt ttgaactcct gtatcacgct atggcgatga aaaaaagaag
     5281 gcattggtat gccttctttt atatgcgtaa tccggggtca attacaaatc atccaagaaa
     5341 gttttatcca gttgtttgaa ggcgcgctta agcgtgtcag ctaatgcctg gtaatccggc
     5401 tttccttcta ccggcgccag cgcttgtcca gcctcctgca atttaccgcg aacttcgtaa
     5461 aaccagttaa ggattgaagg cggcaatggc gtcaaggaac gtttccctaa ccaccataat
     5521 ccctgcatag gcaagctcag ggcgaacagg gcggtcgcca cggccggacc taactgaccg
     5581 cccagcgcta tctgccagca taatgtaaag acggcgacag gcggcataaa tcgtatggca
     5641 tagcgcgtca tacgaatgac gcggttttcg acgaaaacgg gcgccagccg cttttccatc
     5701 ggccacgtct tcgcgtagtg ctgcccccgg cgaaataagc taaaaaaatt tacggagcga
     5761 ttatccggcg tcgacatggc ctacctcaat ttcacatata aaatttaaaa aatttgtgca
//
LOCUS       DAJVSD010000260         5818 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.260, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000260 DAJVSD010000000
VERSION     DAJVSD010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5818
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.260"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            61..813
                     /gene="fnr"
                     /locus_tag="OQP62_003920"
     CDS             61..813
                     /gene="fnr"
                     /locus_tag="OQP62_003920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007849744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate/nitrate reduction transcriptional
                     regulator Fnr"
                     /protein_id="HCS1723340.1"
                     /translation="MIPEKRIIRRIQSGGCAIHCQDCSISQLCIPFTLNEHELDQLDN
                     IIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFD
                     AIGSGHHPSFAQALETSMVCKIPFETLDDLSGKMPNLRQQMMRLMSGEIKGDQDMILL
                     LSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRF
                     QKSGMLAVKGKYITIENSDALAALAGHTRNVA"
     gene            964..1911
                     /gene="uspE"
                     /locus_tag="OQP62_003921"
     CDS             964..1911
                     /gene="uspE"
                     /locus_tag="OQP62_003921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspE"
                     /protein_id="HCS1723341.1"
                     /translation="MAMYQNMLVVIDPNQDDQPALRRAVYLHQRIGGKIKAFLPIYDF
                     SYEMTTLLSPDERTAMRQGVISQRTAWIREQAKYYLEAGVPIEIKVVWHNRPFEVIIQ
                     EVIAGSHDLVLKMAHQHDRLEAVIFTPTDWHLLRKCPSPVWMVKDQPWPEGGKALVAV
                     NLASEEPYHNALNEKLVKETLQLAEQVNHTEVHLVGAYPVTPINIAIELPEFDPSVYN
                     DAIRGQHLLAMKALRQKFSIDEKVTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGL
                     SAAFLGNTAEQVIDHLRCDLLVIKPDEYQTPVELDDEDD"
     gene            complement(1966..2220)
                     /locus_tag="OQP62_003922"
     CDS             complement(1966..2220)
                     /locus_tag="OQP62_003922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2534 family protein"
                     /protein_id="HCS1723342.1"
                     /translation="MIMMKLKSAKGKKFLLCLLAVFIVAASVVTRATIGGVIEQYHIP
                     LSEWTSSMYAIQSAMIFVYSLVFTILLAIPLGIYFLGGDE"
     gene            2459..3490
                     /locus_tag="OQP62_003923"
     CDS             2459..3490
                     /locus_tag="OQP62_003923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HCS1723343.1"
                     /translation="MFTEFFLKNAFNLAILFSCGMALLVVRFWLSRNVQWKKGFTFHA
                     AQFFIYAIIIGTIGSILNNAIEDYNLRFISSGVIDFICTSLIALILTIKLFLIINQFE
                     KAQVNKGRDVTSTRILARVIKITIIVAIVLLYGEHFGMSLSGLLTFGGIGGIAVGMAG
                     KDVLSNFFSGIMLYFDRPFSIGDWIRSPDRNIEGTVAEIGWRITRINTFDHRPLYVPN
                     SVFSSISVENPGRMTNRRIKTVIGLRYEDADKIGLIVDAIRNMLQAHSDIDQKQTLLV
                     YFNEFADSSLNIMVYCFTKTTIWQEWLAVQQDVYLKIIAIVQENGADFAFPSQTLYID
                     DPEAAPAIK"
     gene            complement(3576..4178)
                     /locus_tag="OQP62_003924"
     CDS             complement(3576..4178)
                     /locus_tag="OQP62_003924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1723344.1"
                     /translation="MTKKVNLSTTAGADVSTINEAVSQRIKQFRSQKKMSLDELARRS
                     GVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVADFVNVASEPMVHLINRDAIPVLWR
                     GEKGGSAKLMAGTSGPDMLELWQWIMHPGEQFESAGHPADTCELLFVNQGTLTLTVDG
                     RRFIIREGCSAVARTDMPHAYVNDTNEVLEFTMTVNEKSR"
     gene            4222..4908
                     /locus_tag="OQP62_003925"
     CDS             4222..4908
                     /locus_tag="OQP62_003925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="B3/4 domain-containing protein"
                     /protein_id="HCS1723345.1"
                     /translation="MSSMLPSISPELARIAPGFRALSINVIAAPVRDAQVGEIALKEA
                     CQAVINGQPAWAQAHIDAWNAVFKAFGAKPKRTPCSAEALRKRVLKDGTMAALDPVVD
                     LYNAVSLRYAVPVGGENSAAYCGSPRLVFADGSETFDTLKEGKPVTESPEPGEVIWRD
                     DRGVTCRRWNWRQGVRTRLSASDKMMWFILESLPEMPVDELYAAENMLTDGLEKMMPG
                     LRFESTLIGV"
     gene            4936..5274
                     /locus_tag="OQP62_003926"
     CDS             4936..5274
                     /locus_tag="OQP62_003926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000051808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723346.1"
                     /translation="MSLFLTSFIFEKKEYDEEFYQLDGWIERYTQTIDGYIGMESYTD
                     AASGRMVNNYYWQTRESMELLINNLQHQQAKSQSHKWLSGYQTIIAEIQGCHNVNLPH
                     PLASFSVPYA"
     gene            complement(5380..>5818)
                     /locus_tag="OQP62_003927"
     CDS             complement(5380..>5818)
                     /locus_tag="OQP62_003927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HCS1723347.1"
                     /translation="KPGILAEGEPLPCTKGLVSHNLLPGYCIPGIKKRIIVVPSLDTP
                     VCEWQVKEYSDRLKSAGSHSNRAVYVLSMDTPFAQARFIREHDIHPGIIFVSDYACRQ
                     FLDNSGLKINELSIFARALIECDENNVVTHVSVPRDITHLPVY"
BASE COUNT         1522 a         1406 c         1388 g         1502 t
ORIGIN      
        1 tacgcgctca ccaaaaagat gttaaaattg acaaatatca attacggctt gagcagacct
       61 atgatcccgg aaaagcgaat tatacggcgc attcagtctg gcggttgtgc tatccattgc
      121 caggattgca gtatcagcca gctttgcatc ccgttcacac ttaacgagca tgagcttgat
      181 cagcttgata atatcatcga gcgcaaaaag cccattcaga aagggcaaac tctgtttaaa
      241 gcaggtgatg aactgaaatc gctctatgct atccgctccg gaacgattaa gagctacacc
      301 attaccgagc aaggcgatga gcagattact ggattccatt tagcaggcga cctggtgggt
      361 tttgacgcca ttggcagcgg tcatcatccg agctttgcac aggcgctgga aacctcaatg
      421 gtatgtaaaa tcccctttga gacactggat gacctgtccg gcaaaatgcc taacctgcgt
      481 cagcaaatga tgcgtctgat gagcggtgaa attaaaggcg atcaggatat gatcctgtta
      541 ttgtcgaaga aaaacgccga agaacgtctg gctgcgttta tttacaacct gtcccgccgc
      601 tttgcgcagc gtggtttttc accgcgtgaa ttccgcctga cgatgacccg tggcgatatc
      661 ggcaactatc ttggcttaac ggtcgaaacc attagccgtc tgctggggcg tttccagaaa
      721 agcggtatgc tggcggtgaa aggtaagtat attactattg aaaacagcga tgcgctggcg
      781 gccctcgccg gtcatacccg caacgtcgct taaacgtcag ctaaaccatt gatgttatct
      841 tctgccatat cgttaaattt ttctcattta ttgatctggc agaagcgctt cccctgtttc
      901 attcaccata tttgagttac tctttagtta caaactgcga tgacagttgt aaggagaccc
      961 tgtatggcta tgtatcaaaa tatgctggtg gtcatcgatc ccaatcagga cgaccaaccc
     1021 gcattacggc gagcagttta tttgcatcaa cggattggcg gcaaaattaa agctttcctg
     1081 cctatttacg atttctcgta tgagatgacc accctgcttt ctcctgacga acgcaccgca
     1141 atgcgtcagg gcgtaataag tcaacgcaca gcctggatac gtgagcaggc gaaatattat
     1201 cttgaagccg gtgtccccat tgaaataaaa gtggtctggc acaatcgtcc ctttgaggtc
     1261 atcatccagg aggttatcgc cggcagtcac gatctggtgt tgaaaatggc gcatcagcac
     1321 gatcgactgg aagcggtcat ttttacccct accgactggc atttgctgcg taaatgccca
     1381 agccccgtgt ggatggtcaa agatcagccg tggccagagg gcggcaaagc cctggtcgcc
     1441 gtgaacctgg caagcgaaga gccctatcac aatgctctca acgaaaagct ggtaaaagag
     1501 accttacaat tggcggagca ggttaatcat accgaagtac acctggtcgg cgcctacccc
     1561 gttacgccaa tcaatatcgc cattgaactg ccggaatttg atcccagcgt gtataacgac
     1621 gccatcagag gccagcattt actggcgatg aaagcgctgc gccagaaatt cagcatcgat
     1681 gaaaaagtta cgcatgtaga aaaaggcttg ccggaagaag ttatcccgga tcttgccgaa
     1741 catctccagg cggggatcgt tgtgcttggc accgttggac gtaccggact ctcggccgcg
     1801 tttttgggga acacggccga acaggtcatt gaccatctgc gctgcgacct gttagtcatt
     1861 aagcctgatg agtatcaaac accggttgaa ctggacgacg aggacgatta atccctcttc
     1921 cgtcctgccg gatggcgctg ccatccggcc aacacctcat tcctgttact catctccgcc
     1981 gaggaaatag atccccaaag gaatcgccag cagaatagtg aacaccagac tgtaaacgaa
     2041 aatcattgcc gactgaatgg catacataga gcttgtccac tcggacagtg gaatatgata
     2101 ttgctcaatc acaccgccga tagtcgcgcg cgttaccacc gatgccgcaa cgataaacac
     2161 tgccagcagg cataacagaa attttttccc cttcgccgat ttcagcttca tcatgatcat
     2221 agtattgtcc tttacagatg actttgttac ctgatagcaa caataccatg acaatcacgc
     2281 gatgtctgct ccataaaacg taacattgta tttacataaa aagtaaaccg ctgagattaa
     2341 agctgatagc actatttctt ctttttactt atcgatgatc tacgcgttta tcctgggtaa
     2401 aatacctgtt aatcaggtca ttctgagctg ttatcgtagg aaggagcgga aaacaataat
     2461 gttcactgaa ttttttctca aaaacgcatt taatctggcg atacttttca gttgcggtat
     2521 ggcgttgctg gtcgtgagat tttggctcag ccgtaacgta cagtggaaga aaggattcac
     2581 gttccatgcg gcacagtttt ttatttacgc gattattatt ggaaccatcg ggagcatcct
     2641 gaataatgct attgaagatt ataatttgcg ttttatctct tccggggtca ttgattttat
     2701 ctgcacctcg ctcattgcgc ttattctgac gataaaactt ttcctgatta ttaaccaatt
     2761 tgaaaaagca caggtcaata aaggtagaga tgtcaccagt acccgtattc tggcacgggt
     2821 cataaaaata accattattg tcgcgattgt cttactgtat ggcgaacatt ttggcatgag
     2881 tctgtccggt ctgctgacct ttggcggtat cggcggtatc gctgttggta tggcgggcaa
     2941 agatgtcctg agcaattttt tctccggtat tatgctctat ttcgatcgcc ccttcagtat
     3001 cggagactgg attcgttctc ctgacagaaa tatcgaaggt acggtcgccg aaatcggctg
     3061 gcgaattaca cgaattaaca cattcgacca ccgcccgttg tacgtgccta attccgtctt
     3121 ttcatccatt agcgttgaga atccgggacg gatgaccaac cgtcgaataa aaacggttat
     3181 tggattacgt tacgaagatg ccgacaaaat tggcctcatt gttgacgcta tcagaaacat
     3241 gctgcaggcg cacagcgata tcgatcagaa acagacgctg ttggtctatt ttaatgaatt
     3301 cgccgactct tcgctgaata ttatggtgta ttgctttacc aaaacaacaa tatggcagga
     3361 atggcttgct gtacagcagg atgtttacct gaaaattatt gcgattgtcc aggaaaacgg
     3421 cgctgacttc gccttcccaa gccagacgct atatatcgat gacccggagg ccgcgcctgc
     3481 gataaaataa aagatagccg gtgcccgata acgcttatcg ggcaccgagg cttccctgtc
     3541 cggatgacgg gttgttagcg ccttccttac ggtgatcaac ggctcttttc attcaccgtc
     3601 atggtaaatt caagcacctc attagtgtcg ttaacgtagg catgaggcat atcggttctg
     3661 gctacagcgg agcagccctc ccgaataata aagcgtctac cgtcgactgt taatgtcagt
     3721 gttccctgat taacaaacag taattcacag gtgtctgccg gatgccctgc cgactcaaac
     3781 tgttcaccag gatgcattat ccattgccat agttccagca tatccggccc gctggttccc
     3841 gccattagtt ttgcactgcc gcctttctcg ccgcgccaca acaccggaat agcatcccgg
     3901 ttgataagat gaaccatcgg ctcgctggcg acgttgacaa aatccgccac ggacactccc
     3961 attgccgccg cgatcttaca taacagcgca atgcttggat tagctttaca gccttcaatt
     4021 tccaccagca ttcctttact gacgccggaa cgccgcgcaa gctcatccag cgacatcttt
     4081 ttttggctac gaaattgttt gatacgttgg gaaacagctt catttattgt gctgacgtcg
     4141 gcgcccgccg tggtcgataa gttgactttt ttggtcattg gtcgatatca tagaataaaa
     4201 tagtcattac aggattatgc gatgtcttct atgttaccgt caatcagccc ggaactggcc
     4261 cgtatcgctc ccggctttcg tgcattaagt attaatgtta ttgccgctcc ggttcgcgat
     4321 gcgcaggtcg gagaaatcgc gttaaaagag gcctgtcagg ccgtaattaa cggacaaccg
     4381 gcgtgggcac aggcgcatat agacgcctgg aatgcggtgt ttaaagcatt cggcgcaaaa
     4441 ccaaagcgca ccccctgctc ggctgaagcg ctacgaaaac gcgtgttgaa ggatggaaca
     4501 atggcggcgc tggacccggt cgttgatctt tataacgcgg tgagcctgcg ctatgccgtg
     4561 ccggtaggcg gcgaaaatag cgcggcttat tgtggatcgc cgcggctggt tttcgcagac
     4621 ggtagtgaaa catttgatac cctgaaagaa ggaaaacccg ttaccgagtc gccagaacca
     4681 ggcgaagtta tctggcgcga tgacagaggc gtcacctgtc ggcgctggaa ctggcgtcag
     4741 ggagtacgta cccgactaag cgcttcagat aaaatgatgt ggtttatcct tgaaagcttg
     4801 ccggaaatgc cggttgatga attgtacgcg gcagaaaaca tgctgactga cggccttgaa
     4861 aaaatgatgc caggtttacg ttttgaatcc acgttgatag gtgtttgatt gatattgcgt
     4921 aacaggagaa ataccatgtc gctgtttctg acaagtttta ttttcgaaaa aaaagagtac
     4981 gacgaagagt tttatcaact ggatggctgg attgagcgct atacacagac tattgatggc
     5041 tatattggga tggaaagcta taccgatgcc gccagcggaa gaatggttaa taattattac
     5101 tggcagaccc gcgaatcaat ggagctattg ataaataatt tacagcacca gcaggccaaa
     5161 tcacaaagtc ataagtggct ttccggttac cagacgatta ttgcagaaat tcaggggtgc
     5221 cataacgtta acctgcccca tccgctggca tcattttcag ttccctatgc gtgatgcaat
     5281 agtatatgta ttaaatgtgg gggcacacag gagaatgcct gcgcccctgc attgccagtt
     5341 attcggtttt ctgtgcaggg gcggcgctga tataagtgat taatagacag gaagatgagt
     5401 gatatctcgt ggtacactaa catgcgtaac cacattgttt tcatcgcact caatcaacgc
     5461 tctggcaaaa atactgagct cattaatttt cagcccggaa ttatccaaaa actggcggca
     5521 agcgtagtca gaaacaaaaa ttatgccggg atgaatatca tgttcccgaa taaaacgggc
     5581 ctgagcaaat ggcgtatcca tactcaacac atatactgcc cggtttgagt ggctacccgc
     5641 tgatttaagg cggtcactat attcttttac ctgccattca caaaccggcg tatccagtga
     5701 cgggacgaca ataatccgct tttttatccc cgggatacag taacccggta ataaattatg
     5761 gctcaccagc ccctttgtgc agggtaatgg ttcgccttca gccagtatac cgggtttg
//
LOCUS       DAJVSD010000261         5812 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.261, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000261 DAJVSD010000000
VERSION     DAJVSD010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5812)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5812)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5812
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.261"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..1432
                     /locus_tag="OQP62_003928"
     CDS             <1..1432
                     /locus_tag="OQP62_003928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462081.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HCS1723348.1"
                     /translation="VKWLPFILILVIAAGLWQLTPPSGLSAPAWHSAIIFVATIASIV
                     AKVLPIGAVGIIGITVFALAYAAGDKTASGAITTALSELNSSLIWLIVVAFMIARGFI
                     KTGLGRRIALQMIRLLGKRTLGLAYGLAFADLILSPAMPSNTARCGGVIYPIADSLAR
                     SFDSHPEDESRSKIGTFLITCIGNVNDVTAALFMTGYTGNLLAVKLAANAGVTLSWGS
                     WFIAALLPCLVSFLIVPLLVYWLTRPEIKHTPDAPDLARKELAQMGSMARGEWLMLAT
                     VGVLLVLWIFGSSLGVDATTASFVGLSILLLSGVLTWEDVKSEKGAWDTLIWFAALLM
                     MANQLKKLGFTSWFGNLIGDSIGSTMHGTSWIIILLLLNAAYFYTHYFFASGNAQIAA
                     LYAVFLGVGLHLNIPAAPMALMLAFTSSLYCSLTQYTHARGPILFGAGYVPTGIWWRT
                     GFIISLFNQAVFLTVGLAWWKVLGLY"
     gene            1477..1932
                     /locus_tag="OQP62_003929"
     CDS             1477..1932
                     /locus_tag="OQP62_003929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HCS1723349.1"
                     /translation="MTCIFCQIVEGKAPCHKVWEDEHHLAFLSIFPNTDGFTVVIPKK
                     HYPSYAFDLPPQALADLMLATQKVAKKLDKAFPDVSRTGMFFEGFGVDHVHSKLSPMH
                     GTGDLAHWKPIESRQNKFFEQYEGYLSSHDHERADDEKLAALAARIREA"
     gene            complement(2068..4239)
                     /locus_tag="OQP62_003930"
     CDS             complement(2068..4239)
                     /locus_tag="OQP62_003930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgiQ family radical SAM protein"
                     /protein_id="HCS1723350.1"
                     /translation="MSAISLIQPDRDLFSWPQYWAACFGPAPFLPMSREEMDQLGWDS
                     CDIILVTGDAYVDHPSFGMAICGRMLEAQGFRVGIIAQPDWNSKDDFMRLGKPNLFFG
                     VTAGNMDSMINRYTADRKLRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILG
                     GIEASLRRTAHYDYWSDTVRRSVLVDSKADMLMFGNGERPLVEVAHRLAMGETIDQIR
                     DVRNTAIMVKEALPGWSGVDSTRLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKA
                     ITVQPPRPKPWEKTYILLPSFEKVKGDKVLYAHASRILHHETNPGCARALMQKHGDRY
                     VWINPPAIPLSTEEMDSVFALPYQRVPHPAYGNARIPAYEMIRFSINIMRGCFGGCSF
                     CSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANMYMLRCKSPRAE
                     QTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYDIAVEDPRYI
                     KELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGKEQYLIPY
                     FISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLGKIGYK
                     SEDVVVPKGDRQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGGRRECLVPAPTIE
                     EMREARRQNRNTRPALTKHTPVEHQRQGLAANKKRGKGAGR"
     gene            complement(4373..5794)
                     /locus_tag="OQP62_003931"
     CDS             complement(4373..5794)
                     /locus_tag="OQP62_003931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001528005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4459 domain-containing protein"
                     /protein_id="HCS1723351.1"
                     /translation="MKKCFLFIFMCLFIFSANAELKFRPEIENKKIYFQGKVTDYTLN
                     DFIFFGDSREPFYGSENDDYTATADEWLRFYAELPDVRKWQRVVPDDFSMMSGAPWCD
                     IQFFEQENDHSVITGSEHTRCIDFLVTPKRKGLIPMGTKGTLLDYGSYLAFAPQIEHI
                     TLEGRFPEASRTWLQVRSVQTSATSIADLKIMLNEIYARHGYIFRPGGEMDRYFRQQP
                     WYRPRYANVDYLITETEHRNIKLLKELLSPESQRKKALYIQNTTDFCETLKANNIKYV
                     MDNTAEYLTTGADQPINLEKVWQKYRDLMINGGGNCQRDIESYKRYSFLYSEPLGIYY
                     NSTFEFDEKKGKYVLAYVNFDSSCNKEGDTIELEGMMVKREHVIEDNQGQHSDKDLEL
                     KTINLQCVAGAMMDQPDWDRYVQLILPPEKYNYYQRFIGKKITLRGKVMIAESMYHVT
                     PVLLNLLEEQNPIIKVADMPARP"
BASE COUNT         1299 a         1532 c         1519 g         1462 t
ORIGIN      
        1 cgtcaaatgg ctcccattca ttcttattct ggttatcgcc gccggactgt ggcagctaac
       61 gcccccttcc gggttaagcg cgccggcctg gcattccgcg attatttttg tcgcgacgat
      121 cgcctctatc gtggcgaaag tgctgcctat tggcgcggtc ggtattatcg gcatcaccgt
      181 ctttgcgctc gcctatgctg ccggcgacaa aacggccagc ggcgcgatta ccacggcctt
      241 gagcgagctg aacagttcgc tgatctggct tatcgtcgtc gcctttatga ttgcccgtgg
      301 gtttatcaaa accgggctgg gtcggcgtat cgccctacaa atgatccgtc tgttaggtaa
      361 acgaacgctg ggtctggctt atggcctggc gtttgccgat ctgatcctct cccccgcgat
      421 gcccagtaac accgcgcgct gcggcggcgt gatttacccg atcgccgact cgctggcgcg
      481 cagctttgat tcacatccgg aagatgagtc tcgcagcaaa atcggcacct ttctgatcac
      541 ctgtattggc aatgttaacg acgtcaccgc cgcactgttt atgaccggtt atacgggtaa
      601 cctgctggcg gtaaaactgg cggcgaacgc cggcgttacg ttgagctggg gaagctggtt
      661 tattgccgcg ctcttgcctt gcctggtctc ttttcttatc gtcccgctgc tggtctactg
      721 gctgacgcgt ccggaaatta aacatacgcc ggatgcgccg gatctggcgc gcaaagagct
      781 ggcgcaaatg ggcagtatgg cgcgcggcga gtggctcatg ctggcgaccg tcggtgtgtt
      841 gctggtgcta tggatttttg gcagctcgct cggcgtggat gccacgacgg cctcttttgt
      901 cggtctctct attttattac tgagcggcgt gctcacctgg gaagacgtta aaagcgaaaa
      961 aggcgcctgg gatacgttga tttggtttgc cgcgctgctg atgatggcta accagttgaa
     1021 aaaactagga ttcaccagtt ggtttggcaa cctgattggc gacagcatcg gcagtacgat
     1081 gcatggaacc agttggataa tcatcctgct gctgcttaac gcagcctatt tttataccca
     1141 ctattttttc gccagcggca acgcgcaaat cgccgcgctg tatgcggtgt ttctgggtgt
     1201 cggcctgcat ctgaatatac cggcggcgcc gatggcgctc atgctggcgt ttaccagcag
     1261 cctgtactgc tctcttacac agtataccca cgcacgcggc cccattcttt ttggcgccgg
     1321 ctatgtaccg acgggcatct ggtggcgaac gggatttatt atcagcctct ttaaccaggc
     1381 ggtctttttg acagtcggcc tcgcatggtg gaaagtgtta gggttgtatt aaacgcttaa
     1441 cgcatcgata accccctcgg ttaacggaga aatggaatga cctgcatttt ctgtcaaata
     1501 gttgaaggta aagcaccttg tcataaagtt tgggaagatg agcatcacct ggcttttttg
     1561 tcgatttttc cgaataccga tgggtttacc gtagtgatcc cgaaaaaaca ttaccccagc
     1621 tacgcgttcg atctaccgcc gcaggcgtta gcggacctga tgctggcgac ccaaaaagtg
     1681 gcgaagaaac tggataaggc tttcccggat gtcagtcgta cgggaatgtt cttcgaaggt
     1741 ttcggcgtag accatgtgca tagtaaatta agccccatgc acggtactgg cgatttagcc
     1801 cactggaaac cgattgaatc gcggcagaat aaatttttcg aacagtatga aggatacctg
     1861 tcgtcacacg atcatgaacg ggcagatgat gagaaactgg ccgcgctggc ggccagaatt
     1921 cgtgaggcat aaatacggag cacttctgcc ggatggtgtt cggcctgggt cgatctgtgg
     1981 gcctgataaa cgcagcgcca tcaggcaaaa taattgctgg atcgcggctt cgccttatcc
     2041 agcctgacag gatacctgta aaaccgttta acgccccgcg cctttcccgc gcttcttatt
     2101 agcagcaagc ccctgccgct gatgttccac cggcgtatgc ttggtcaacg ccgggcgggt
     2161 attgcggttc tggcgacgcg cttcgcgcat ctcttcaatg gtcggcgcag gcaccagaca
     2221 ctcacggcga ccgccaatca ggtgcttttt gcccatcgct tccagcgcct ggcgaatcag
     2281 cggccagttc gccggatcgt gataacgcag cagcgcctta tgcaggcgac gttgcctgtc
     2341 tcccttcggc accaccacat cttcactctt ataaccaatt ttacccagcg ggtttttgcc
     2401 ggtgtaatac atggtggtcg aatttgccaa cggcgacggg tagaagttct gcacctgatc
     2461 cagacggaag cggtggcgct tgagccacag cgccagattc accatatcct cgtcccgcgt
     2521 gcccggatgc gcggagataa aatatgggat cagatactgc tcttttccgg cctgtttaga
     2581 gtaaaggtca aataactctt taaagcgatc gtagctgccc atacccggct tcatcatttt
     2641 cgacagcgga ccttcttcag tatgctccgg cgcaatcttc agatagccgc ccacatgatg
     2701 gcttgccagc tctttaatgt agcgaggatc ttctacagcg atgtcgtagc gcacgccgga
     2761 ggcaattaag attttcttaa tgcctttcag ctcacgggcg cggcgataaa gattgatcgt
     2821 cggcgtatgg tcagtatcca tatgcggaca gatatccgga tagacgcatg acaggcgacg
     2881 acaggtctgc tccgcacgcg gcgacttaca gcgcagcata tacatgttcg cggtaggacc
     2941 gcccagatcg gagatcacgc cggtaaaccc cggcaccgtg tcgcggatcg cttcgatctc
     3001 gttgataata gagtcttccg agcggctctg aatgatgcgc ccttcatgtt cagtgatcga
     3061 gcagaaagag cagccgccaa agcagccgcg catgatattg atcgaaaagc ggatcatctc
     3121 ataggccgga atacgggcat tgccgtaagc cgggtgcggc acacgctgat acggcagcgc
     3181 aaacacgcta tccatctctt cagtggagag cggtatggcg ggcgggttga tccagacata
     3241 gcggtcgccg tgtttttgca tcaacgcccg cgcgcagcca gggttagttt cgtgatgcag
     3301 aatacgcgac gcatgggcgt acagcacctt gtcgcctttc accttttcaa aggatggcaa
     3361 caggatatag gttttttccc acggcttcgg acgcggcggc tgcacggtaa tcgccttagc
     3421 ttcttgcttt ttcggcgcga ccggcttgtt atccgcgcac ggcagatcct cgccataggg
     3481 atggggaatt ggatcgattt tacccggcgt gtccagacga gtggagtcga cgccgctcca
     3541 gcctggcagc gcttctttaa ccataatcgc agtgttacgc acgtcgcgaa tctgatcgat
     3601 ggtttcgccc attgccagac ggtgcgccac ttccaccagc ggacgctcac cgttgccaaa
     3661 catcagcatg tcggctttgg aatcgactaa cactgaacga cgcacagtat cagaccagta
     3721 gtcgtaatgc gcggtacggc gcagactggc ctcaatgccg ccaaggatca ccgggacatc
     3781 tttccacgct tctttgcaac gctgggtata gaccagcgtg gcgcggtccg ggcgtttgcc
     3841 cgcgacgtta tccggggtgt aggcgtcatc gtggcgcagc ttacggtcag cggtgtaacg
     3901 gttgatcatc gagtccatgt tgccagcggt gacgccgaag aacaggttcg gtttacccag
     3961 acgcataaag tcgtctttgc tgttccagtc cggctgggcg atgatcccca cgcggaagcc
     4021 ctgcgcttcc agcatacggc cgcaaatcgc catgccgaag ctcggatgat cgacatacgc
     4081 gtcgcccgtc accagaatga tgtcgcagct atcccagcca agttgatcca tctcttcacg
     4141 tgacatcggc aaaaacggcg ccggcccaaa acaggcggcc cagtactgcg gccaggagaa
     4201 aaggtcgcga tccggttgga tcagggagat agcgctcata ttgcttccaa aaaattggca
     4261 aaaaaataat caaaggtcgg ggattataag ctggaatgga agagaaatcg aattgattgg
     4321 tgaggctgca ctctgtagcg gggccgattg cctgccccgt cggttatcgt acttatggac
     4381 gagcaggcat atctgctact ttgataatag gattttgttc ttcgagcaaa ttcaacagta
     4441 ccggcgtgac atgatacatg gattctgcaa tcatgacttt ccctcgcagg gtgattttct
     4501 tccctataaa ccgttgataa taattgtatt tttcaggcgg aagaatgagc tggacatagc
     4561 gatcccagtc aggttggtcc atcatggccc ctgccacaca ctgaaggttt attgttttta
     4621 attcgagatc tttatccgag tgttggcctt gattatcttc aatgacgtgc tcgcgtttga
     4681 ccatcatacc ttccagttca atcgtgtcac cctctttgtt gcaggaagaa tcaaagttca
     4741 cataagcgag aacatatttc cctttctttt catcaaactc aaaagtggaa ttgtaataaa
     4801 tacctaaagg ttcgctgtat aaaaaggagt agcgcttata gctctcgata tcgcgttgac
     4861 agtttccgcc gccattgatc attaagtctc tgtatttttg ccatactttt tctaaattga
     4921 ttggctgatc tgcaccagtc gtaaggtatt ctgccgtatt gtccatgaca tatttgatat
     4981 tattcgcttt cagcgtctca caaaaatcgg ttgtgttctg aatatacagc gcctttttac
     5041 gctgtgactc aggagaaagc agctctttga ggagtttgat attacgatgc tctgtctcgg
     5101 taatgaggta atcaacgttc gcatagcgtg ggcgatacca cggctgctgt cggaagtacc
     5161 gatccatctc accgcccggt ctgaaaatat aaccgtgacg agcataaatc tcattaagca
     5221 taattttaag atcggctatc gaggttgcgc tggtttgcac gcttcttacc tgaagccagg
     5281 tccgcgaggc ttcaggaaat cggccttcca gcgtgatgtg ctctatctgc ggtgcaaaag
     5341 caagatagct gccgtaatcc aacagagttc ccttcgtccc catgggaatg agtcctttcc
     5401 ttttaggcgt cacgagaaaa tcgatacagc gcgtatgctc acttccagta atcaccgaat
     5461 ggtcattctc ttgttcaaaa aactggatgt cacaccacgg cgcgccactc atcatagaaa
     5521 aatcgtcagg aacaacgcgc tgccattttc gaacgtcggg caactcagcg taaaacctga
     5581 gccactcatc tgcagtggcg gtataatcat cgttttcgct gccataaaag ggttcgcgac
     5641 tgtcaccgaa aaagataaag tcattaagcg tgtagtctgt gaccttgccc tgaaaataga
     5701 tttttttatt ttcgatctca gggcggaatt ttagttccgc attagctgag aagataaaca
     5761 ggcacataaa tataaataaa aaacattttt tcattattta ccactccctg ta
//
LOCUS       DAJVSD010000262         5795 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.262, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000262 DAJVSD010000000
VERSION     DAJVSD010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5795
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.262"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(134..1273)
                     /locus_tag="OQP62_003932"
     CDS             complement(134..1273)
                     /locus_tag="OQP62_003932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000155541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DKNYY domain-containing protein"
                     /protein_id="HCS1723352.1"
                     /translation="MTIRRWILSATLLLLPVPAFADFQYQQDKDGVFYTADDEPQILS
                     RLPDVSYSHLRRIADLSHPQDPRPLIEINPDSHNCDDNHICQHAYLSDGHFILWAGKI
                     VQNTGDEPAVDVASFQSFGAFAADKHGLYFDGKRRDSNAGEKRVDMATLAETKIWNLL
                     RDKNNLYYEGRWLGRADGFRVLRLDSTSAREFIVTTAQRVIVNGIPITADANTFQIIR
                     WMPGEVLIYRDKTGKHDYEIDNSSRYCGYFNIGLREVTWLKHEATNAGSSCKVETLPG
                     VDPEYFFRLNGNTGWYKDRIYQVSTNALGEGVLRIFTSQEKLPALKIDRVTYNYYHLA
                     LSADGQLYRQISRDQWQSYNPILTEWTTVSPAPTDVISLLPSDYH"
     gene            complement(1611..3014)
                     /gene="cycA"
                     /locus_tag="OQP62_003933"
                     /gene_synonym="dagA"
     CDS             complement(1611..3014)
                     /gene="cycA"
                     /locus_tag="OQP62_003933"
                     /gene_synonym="dagA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001541380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-serine/D-alanine/glycine transporter"
                     /protein_id="HCS1723353.1"
                     /translation="MVDQVKVAADEQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFMG
                     SGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYF
                     TGWTYWFCWVVTGMADVVAITAYAQFWFPGLSDWVASLAVVVLLLSLNLATVKMFGEM
                     EFWFAMVKIVAIVALIVVGLVMIAMHFKSPTGVEASFAHLWNDGGWFPKGISGFFAGF
                     QIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSV
                     VPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKA
                     FAKLSKRAVPAKGLTFSCICLLGGVVMLMVNPSVIGAFTMITTVSAILFMFVWTIILC
                     SYLVYRKKRPHLHEKSIYKMPLGKLMCWVCMAFFAFVLVLLTLEDDTRQALIVTPLWF
                     IALGLGWLFLRKNKLAK"
     gene            complement(3310..3930)
                     /gene="fklB"
                     /locus_tag="OQP62_003934"
     CDS             complement(3310..3930)
                     /gene="fklB"
                     /locus_tag="OQP62_003934"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015742582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HCS1723354.1"
                     /translation="MATPTFDTIEAQASYGIGLQVGQQLSESGLEGLLPEALVAGIAD
                     ALEGKHPAVPVDVVHRALREIHERADAVRRERFKAMAAEGVKYLEENREKDGVNSTES
                     GLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNGVIAGWIE
                     ALTLMPVGSKWELTIPQELAYGERGAGASIPPFSTLVFEVELLEIL"
     gene            4150..4785
                     /locus_tag="OQP62_003935"
     CDS             4150..4785
                     /locus_tag="OQP62_003935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OapA family protein"
                     /protein_id="HCS1723355.1"
                     /translation="MPGRFELKPTLAKIWHAPDNFRIMEPLPPMHRRGIIIAAIVLVI
                     GFLLPASETSDSPVVTREAQLDLQSQSQPPTEAQLQAQLVAPQNDPDQVAPVASEPIQ
                     EGQPEEQNQPQTQPFQQDSGIGQQWRSYRVEPGKTLAQLFRDHGLPPTDVYAMAQVEG
                     AGKPLSNLKNGQMIKIRQNASGVVTGLTIDGDNGQQVLFTRQPDGSFIRAQ"
     gene            complement(4835..5761)
                     /locus_tag="OQP62_003936"
     CDS             complement(4835..5761)
                     /locus_tag="OQP62_003936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1723356.1"
                     /translation="MDTQRQASPFARKNVVYVCAAFCCLLWGSAYPAIKSGYDLFQIA
                     TDDIPSKIVFAGYRFLFAGGLLLLFALLQRKPIGRFRPRQFAQLTLLGLTQTSLQYLF
                     FYIGLAFTSGVKGSIMNATGTFFSVLLAHFIYQNDRLSYNKTLGCILGFAGVMVVNVS
                     NGLDFSFNLPGEGSVVLAAFILSAATLYGKRLSQTVDPMVMTGYQLGIGGLVLVIGGY
                     VFGGTLTIHGFSSVAILVYLTLLSSVAFALWNILLKYNRVGMIAPFNFLIPVSGAALS
                     AIFLGENILEWKYMIALVLVCSGIWWVNKVKR"
BASE COUNT         1583 a         1584 c         1399 g         1229 t
ORIGIN      
        1 gttccctgcc cccacggctg atagtgaaac aaagcatatg gaatgtcgga acaggccaga
       61 gctaacactg gtgccagcat taataaaatc gataaacaga actgttttat tctcaacatt
      121 gcgccatcct gcgctagtgg taatcagagg gaagcaaaga gataacgtca gtgggcgctg
      181 gtgataccgt cgtccactct gttaatatcg ggttatagct ctgccattga tcacgtgaga
      241 tctggcgata taattgccca tccgcggaca aagccagatg gtagtaatta taggtaactc
      301 tatctatttt cagcgccgga agtttttcct gcgacgtaaa aatgcgcagc accccctcgc
      361 ccaacgcatt cgtgctcacc tgataaatac gatccttata ccaaccggtg ttcccgttca
      421 gacgaaaaaa atactccgga tcgacacccg gcagggtttc cactttacaa ctgctcccgg
      481 cgttggttgc ctcatgcttc agccatgtca cctcacgcag gccaatatta aaatagccgc
      541 agtaccgact ggaattatca atctcatagt catgcttacc ggttttatca cgataaatta
      601 gtacctcgcc aggcatccag cgaatgattt gaaacgtatt agcatcagcg gtaatgggta
      661 tgccgttcac aatcacccgt tgcgccgtcg tcacaataaa ctcccttgcc gaagtggaat
      721 ccagcctcaa cacgcgaaac ccatcggccc gccccagcca gcggccttca taatagagat
      781 tatttttatc ccgcagcaga ttccagattt tcgtctctgc cagagttgcc atatccacac
      841 gtttttcacc cgcattgcta tcacgacgtt taccatcaaa atagagaccg tgtttatcgg
      901 cggcaaaggc gccaaaagac tgaaagctgg caacatcaac ggcaggctca tccccggtat
      961 tctggacgat tttgcctgcc cacaggataa agtgcccatc gctgagataa gcgtgctgac
     1021 aaatatgatt gtcgtcgcag ttatggctgt cgggattgat ttctattaac gggcgagggt
     1081 cttgcgggtg agataaatcg gcaatacgcc gtaaatgcga atagctaacg tcaggcagtc
     1141 gggagagaat ttgcggttcg tcgtcggcgg tataaaaaac gccgtcctta tcctgctgat
     1201 actgaaaatc tgcgaacgcg ggaacgggca gcagcaaaag cgtagcgctt aaaatccagc
     1261 gtcgaatggt cataattaca gtttgaaata ggagattaat ttgttactta aaccactttt
     1321 tcaacgtatt atccagcgcg agccgccatt ataggaattc atcaaggcgg cacttaccgt
     1381 cagcctgcaa tttacagctg cccttcctga agaaacgttt ttcgcgtcat tgcatcagcg
     1441 gacaaacact catttcctga gcttttcatc tccatacgct atcaaatgtg gcgagaaaaa
     1501 tagctcgtta aggagcggga agcgacaaaa tggggcgtaa aaatgaagaa agcgccccgg
     1561 cgggtacgtt atgcgcatac cccctcgcct aagcgagagg gataaatccg tcatttagcc
     1621 agtttgttct tacgcaggaa cagccagccc agacccaacg cgataaacca cagcggcgtc
     1681 acgatcagcg cctggcgcgt atcatcttcc agcgtcagca ataccagcac gaacgcaaag
     1741 aacgccatgc agacccagca catcagctta ccgagcggca tcttatagat ggatttttca
     1801 tgcaggtggg gacgcttttt gcggtacacc aggtatgaac acagaatgat ggtccagaca
     1861 aacataaaca ggatggccga aaccgtagtg atcatggtga atgcgccaat cacgctcggg
     1921 ttgaccatca gcataaccac gccgcccagc aggcagatac aggagaaggt caggcctttc
     1981 gccggtaccg cgcgtttcga tagcttagcg aacgcttttg gcgccacgcc ttcttgcgcc
     2041 aggccaaaca gcatacggct ggtcgagaag acgccgctgt tggcggaaga cgccgccgag
     2101 gtcagcacaa caaagttgat cacgctcgcg gcggcaggca gacccaccag tacaaacagc
     2161 tcaacaaacg ggctcttatc cggtacgact gaactccacg gcgttaccga cataatgaca
     2221 atcagcgcaa agacgtagaa catgatgata cggatcggta ttgagttgat cgcgcgcggc
     2281 agcgattttt ccggatcttt agtttctgcg gcggtagtac cgaccagctc aatgcccacg
     2341 aaggcgaaca ccgcaatctg gaaaccggca aagaacccgc taataccttt cgggaaccag
     2401 ccgccgtcat tccacagatg cgcgaaagac gcttcaacgc cggtcggcga tttaaagtgc
     2461 atcgcaatca tcaccaaccc aaccacaatc aacgccacga tggcgacgat tttgaccata
     2521 gcaaaccaaa attccatttc accaaacatt ttaacggtgg cgaggttgag gcttagcagc
     2581 aggaccacta ccgccagcga ggcgacccaa tcggaaaggc cgggaaacca gaactgcgcg
     2641 taggcggtaa tcgccaccac gtcagccata ccggtcacta cccagcaaaa ccagtacgtc
     2701 cagccggtga aatatcccgc ccaggggcca agcaggtcgg aagcaaaatc gctaaacgat
     2761 ttatattcca gattcgagag cagcaattcc cccatggcgc gcatcacgaa aaaaagcata
     2821 aaaccgatga tcatatacac aaaaatgatc gacggtccgg cgagactgat cgttttaccc
     2881 gatcccataa acagaccggt accaatagcg ccgccaatag cgataagctg tatatgacgg
     2941 tttgtaagat tgcgccgtag cgactgttca gccggagcct gttcgtcggc tgcgactttt
     3001 acctgatcta ccatgttttt cttcctgtac ctgtctgtgt tgtgcgggct ctacggcctt
     3061 tggtctatga tacgacgatc ctgttatcag gactcatcga tattaggtaa gaatcggcgg
     3121 gatgaatact aagattcaaa tacaatgtta attttatgtt taaaatgagt gttatatcac
     3181 tttgataatg cgaattatct cacaaaaata cacgtaacga cgccatttgc aaaataaaat
     3241 attggcatct gctgaagtca gggttgccgg ataaggcgtt tacgccatca tccggcaaac
     3301 ccggggcgct tacagaattt ccagcagttc cacctcaaac accagggtgc tgaatggcgg
     3361 aatagatgcc ccggccccac gctcgccata ggccagctcc tgtgggatag tcagttccca
     3421 tttggaacct accggcatca gagtcagcgc ttcaatccag ccggcgatca cgccatttac
     3481 cgggaattca gccggttcgc cgcgcgcgac ggagctgtca aatacggtgc catcaataag
     3541 cttaccggtg taatgcacgc gtacgcggtc ggtacgcgcc ggaatcgcgc cttcgccctg
     3601 cgtcagaacg cggaactgta aaccagattc agtactgttc acaccgtctt tttcgcggtt
     3661 ttcttccagg tatttcacgc cttcggccgc cattgctttg aaacgctcac gacgcaccgc
     3721 gtccgcacgc tcatgaattt cacgcagcgc acgatgcacc acatcaacag gaaccgccgg
     3781 gtgtttacct tccagcgcat cagcaatgcc tgcaaccagc gcttcaggca acagcccttc
     3841 aagaccggat tcgctgagct gctgccctac ctgcaaacca atgccgtagc tcgcttgcgc
     3901 ttcaatagtg tcaaaagtcg gggtggccat tatttttcct tcatcggata tcaaaaaagt
     3961 agcgggcagc ataacagcca cgcttcttct ggtaaaactt tgtctcaggg aggatgacaa
     4021 atcgcaggga aaaagaaaca atagattatc cgtattgatg tcacgaaagc ggatagcact
     4081 accagtatca tagcgttagc catctatact ctatgattaa ggaacgagat gcggagcagg
     4141 aggtaaacca tgcccgggcg ctttgaatta aaaccaaccc tggcgaaaat ctggcacgcg
     4201 ccggataatt ttcgcatcat ggagccgctg ccgcctatgc atcgtcgtgg cattatcatt
     4261 gccgctatcg tgctggtgat cggcttcctg ctgcccgcca gcgagaccag cgactcgcct
     4321 gtcgtcacgc gggaagcgca attggatctg caatcgcaat cacagccgcc gacggaggcc
     4381 cagcttcagg cgcaactggt cgcgccgcaa aacgatccgg atcaggtggc gcccgttgcg
     4441 tcggaaccta tccaggaagg ccagccggaa gaacaaaacc agccgcagac gcagcctttc
     4501 cagcaggata gcggcatcgg tcaacaatgg cgctcgtacc gggtagagcc tggtaaaact
     4561 ctggcgcaac tgttccgtga ccacggactg cccccgacag acgtttatgc aatggcgcag
     4621 gtagaaggcg ctggcaagcc gctgagtaac ctcaaaaatg gtcaaatgat taaaattcgc
     4681 cagaatgcca gcggggtggt gacaggttta acgatagatg gcgataacgg tcaacaggtg
     4741 ctgtttacgc gtcagcctga cggcagtttt attcgcgcac agtaacgccg gctgcgcctt
     4801 accccgtcta taccctattc gttcaggtga agcattaccg cttcacctta ttcacccacc
     4861 aaatccccga acacaccagc accagcgcaa tcatgtattt ccactccaat atattctcgc
     4921 cgagaaaaat agccgaaaga gccgcgccag aaaccgggat cagaaagtta aacggcgcaa
     4981 tcatccccac gcgattatat ttgagtaaaa tgttccatag cgcaaaagcg accgacgaga
     5041 gcagcgtcag gtagactaaa atcgccaccg acgagaagcc atgtatcgtc agcgtaccgc
     5101 caaaaacgta accgccaatg accagtacca gaccgccaat ccccaattga tagccagtca
     5161 tgaccatcgg atcgaccgtc tgcgagagac gtttgccata caatgtggcc gcagaaagaa
     5221 taaacgcagc cagcaccacg gagccttctc ccggcagatt aaagctgaaa tccaggccgt
     5281 tgctgacgtt caccaccatg acgcccgcaa agcccagaat acagccgagc gttttgttgt
     5341 agctcaatcg gtcgttctga taaataaagt gcgccagcaa tacgctgaag aatgtgcctg
     5401 tcgcgttcat gattgagcct ttcacgccgg aggtgaacgc aaggccgata tagaaaaaga
     5461 gatattgcag cgacgtctgg gtcagaccta gtaacgttaa ctgagcaaac tggcgcggac
     5521 gaaaccgacc aatcggttta cgctgaagca gcgcgaacag tagtagcaac ccacccgcaa
     5581 acaaaaaacg ataaccagca aaaacaattt tagaagggat atcgtcggtg gctatctgaa
     5641 agaggtcata accgcttttg atggctggat aagcgctgcc ccatagcagg caacaaaatg
     5701 cggcacacac ataaacgacg tttttgcggg caaacgggga ggcctggcgt tgggtatcca
     5761 ttctttcacc aagaaattaa aataatgttt tattt
//
LOCUS       DAJVSD010000263         5765 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.263, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000263 DAJVSD010000000
VERSION     DAJVSD010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5765
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.263"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            57..1232
                     /locus_tag="OQP62_003937"
                     /pseudo
     CDS             57..1232
                     /locus_tag="OQP62_003937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459559.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein"
     gene            complement(1311..1871)
                     /locus_tag="OQP62_003938"
     CDS             complement(1311..1871)
                     /locus_tag="OQP62_003938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgB family protein"
                     /protein_id="HCS1723357.1"
                     /translation="MDKYLRLLSQGDRLGLTLIRLSIAIVFIWIGLLKFVPYEADSIT
                     PFVANSPFMSFFYEHPEEYRQHLTHEGELKPEERAWQTANNTYAFSDGLGVVELIIAA
                     LVLANPVSRWLGLAGGVLAFLTPFVTLSFLITTPEAWVMPLGDAHYGFPYLSGAGRLV
                     LKDTLMLAGAVMIMADSARSLLLQRQ"
     gene            complement(1884..2120)
                     /locus_tag="OQP62_003939"
     CDS             complement(1884..2120)
                     /locus_tag="OQP62_003939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1723358.1"
                     /translation="MLKVTTLIASLLAAPLAFSASAQPLTDVEYISVSAVSATPSMLE
                     DAIARLAQSKQASSWKITSMRIDNTGYATAILYK"
     gene            complement(2277..3602)
                     /locus_tag="OQP62_003940"
     CDS             complement(2277..3602)
                     /locus_tag="OQP62_003940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridine nucleotide-disulfide oxidoreductase"
                     /protein_id="HCS1723359.1"
                     /translation="MTQYQALIIGFGKAGKTLAATLAKTGWRVAIIEQSASMFGGTCI
                     NIGCIPTKTLVYDAEREGDFSVAMQRKAAVVNFLRDKNFHNLADLDNVDVIEGRAEFI
                     DNHTLRVFQADGERVLRGEKIFINTGAESVIPAITGLTTTAGVFDSTGLLSLSQRPAR
                     LGILGGGYIGLEFASMFANFGTKVTIFEAAPQFLPREDRDIAQAITHILQEKGVELIL
                     NANVQAVSSTEGAVQVETPEGAHLVDALLVASGRKPATAGLQLQNAGVAVNERGGIIV
                     DDYLRTTADNIWAMGDVTGGLQFTYISLDDFRIVRDGLLGDGKRSTRDRQNVPYSVFM
                     TPPLSRVGLTEEQARASGATVQVVTLPVAAIPRARVMNDTRGVLKAVVDVNTQRIVGV
                     SLLCVDSHEMINIVKTVMDADLPYTVLRDQIFTHPTMSESLNDLFSLIK"
     gene            3818..4672
                     /locus_tag="OQP62_003941"
     CDS             3818..4672
                     /locus_tag="OQP62_003941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HCS1723360.1"
                     /translation="MDALSRLLTLNAPQGSIDKNCPLGGDWQLPHAAGELSVIRWHTV
                     TQGEAQLEMPTGDAMTLTPGKVVILPQNSAHRLRQSGEAPTHIVCGSLRLHTTSRYFL
                     TALPEVLCLAPPPHSPASIWLNAAISLLQQESERHLPGADVLYSQQCATLFTLAIRDW
                     LSQAGTAKSVLNLLLHPRLGRVILHMLETPAHPWTVETLVQRVHMSRASFAQLFRDVS
                     ATTPLAVLTTLRLQIAAQTLSREALPVMVIAESVGYASESSFHKAFVREFGCTPGEYR
                     KRVNALGR"
     gene            complement(4723..4935)
                     /locus_tag="OQP62_003942"
     CDS             complement(4723..4935)
                     /locus_tag="OQP62_003942"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723361.1"
                     /translation="MPGLYRGLPLYAGGREQRDKNDRKGAGSEVMSRIATPMIGGMIT
                     APLLSLFIIPAAYKLMWLRRHRRLAA"
     gene            4839..5034
                     /locus_tag="OQP62_003943"
                     /pseudo
     CDS             4839..5034
                     /locus_tag="OQP62_003943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000635961.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
     gene            5166..5477
                     /locus_tag="OQP62_003944"
     CDS             5166..5477
                     /locus_tag="OQP62_003944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001032257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-binding protein"
                     /protein_id="HCS1723362.1"
                     /translation="MNKFTSLLAVVFISAGVHTAEKMESRQLSATAHEMMNNGDAFAH
                     QQMAQTQKPSAPTTVENATPFSEMDDYEKAMVIHQSMNNAHSFSHEIQAEEHHKQIKR
                     N"
BASE COUNT         1488 a         1585 c         1389 g         1303 t
ORIGIN      
        1 gtgaatcaga cctggtatct gttatccatt tttgagccac gccaggcgtc aacgtcatga
       61 ataagatcat caaacgttta gagatcatta aaagcgccat cgaacttgag gacgaagaga
      121 ttatccgtca gcagctcatc tacctgaaaa atgagccgca ggatgccgta atcagcgcga
      181 ttgcccaggc gattgaaact cgtcgattca gtgacgccat gcaagagatc gccgcctggc
      241 tacaggctca acgggcgctc tcgacgtggc aagatccctc tattgccgcc agtaaactgg
      301 agctgaaagc gcttgaagcc caacttcgcg atctgattga caaacgaaat gcgcgggtac
      361 aaatcctcga cgatttcaac gacctctatc atctgcgtct cgggccgttg atgagccgta
      421 ttctggagtt gcgtaaacag ctcgcggtga gtatgcagcg taagcaagag gccgaaataa
      481 aacgccggga aaaggattat caatcctgcc tgcaatttat ttcccaggcc gtggatcaac
      541 tggcaacgct aaaacagcag tggacaggat tgaatgccgc ctcgcgcgaa gcggtgggca
      601 tccgtcagcg aatccagcag cagacggaat taatcaccgc gttgctggcg gaaattcgcg
      661 agctggaagc ggatttttcc catcaggacg acagcgcatt ccgccaggcg caggaaaatg
      721 cggaacagaa ctatcaccag taccgggagc agcagcagga agcgtaattc cgctacgccc
      781 gcgatcaacg tttgtcggca gacgaacgca gtgaattaaa acgtttgtgg cgtcaggcca
      841 gccgcctgtg tcacccggat gtggtcgccg atgaattgaa agaaaaagcg caccagatga
      901 tggtacagct taatcaggcg cggcagaatg ccgatctggc ggcaattcgc gcgttattga
      961 cgcagctgca aagcggtctg gaaccgatga tggcaagcga caggctaaat aacctggaac
     1021 atctgcgcca taaaatacgc cagctccgca cgcaaatcga cgcgctgttg aaagagataa
     1081 cgcagctgga aacggaaaat gcctggcggc tcgcctcttc cgttgcgaat aaggaagcct
     1141 atttctccga gcaggaacgg gcgctaaccg aaattcgcaa tacgctggag gcgcaggttc
     1201 aacaggtgga acaggaactt ctggcagggt agtccatcat tcatcaacac attgtcggat
     1261 ggcgcaagcg ccacccgacg aatcgcggca taaagagagt aagagggtcg ctactggcgc
     1321 tgtaaaagta acgaacgggc ggagtccgcc atgatcatca ccgcacctgc cagcattaac
     1381 gtatctttta ataccagccg cccggcgccc gataaatacg ggaaaccata atgcgcatcg
     1441 cccagcggca taacccaggc ctccggcgtg gtgattaaaa acgacagcgt gacaaatggc
     1501 gtcaggaatg ccagcacgcc gcccgccagc cctaaccagc ggctaacagg gttagccagt
     1561 accagcgccg cgataatcaa ttccaccacg cccagaccat ccgaaaacgc atacgtatta
     1621 ttggccgttt gccaggcgcg ttcctccggt tttagttcgc cctcatgagt cagatgctga
     1681 cgatattctt caggatgttc atagaaaaaa gacataaacg ggctgttcgc cacaaacggg
     1741 gtaatactgt ctgcctcata gggcacaaat tttagtagtc caatccagat aaaaacgatg
     1801 gcgatactca ggcgaattaa tgttaatccc agccgatccc cctgacttaa cagacgaaga
     1861 tatttatcca tctcaggctc tccttattta tataatatcg cagtggcgta acccgtatta
     1921 tcaatacgca ttgacgtaat tttccatgac gacgcctgtt tactttgcgc cagtctggca
     1981 atagcgtctt caagcattga cggtgttgct gacaccgcag aaacgctgat atattcaacg
     2041 tcagttagcg gctgggcgga ggcggaaaac gccagcggcg cagccaataa tgaagcaata
     2101 agtgtggtaa cttttaacat cgagatttcc agtcgtgggt tatttcaatg gtgttataat
     2161 acgttatgcc tgactaaagc cttttctttc agacgccagc atatttgtcc tgtcgtattt
     2221 ttatggtctg acaggcaaaa aaaagccctg attaacaggg ctacattatt tatgttttac
     2281 ttaatgagag agaagagatc gtttaaagac tcactcattg taggatgggt aaatatctgg
     2341 tcgcgtaaca ccgtataagg taaatctgca tccataacgg ttttaacgat attaatcatt
     2401 tcatgagaat cgacgcataa caatgacacc cctacaatac gctgcgtatt cacgtccact
     2461 accgctttta gtacgccacg ggtatcattc ataacacggg cgcgagggat cgccgccacc
     2521 ggtaatgtca ccacctgcac cgttgcgccg cttgcccgcg cttgttcttc cgtcagcccg
     2581 acacgagaga gcggcggcgt cataaagacg gaatacggta cgttctggcg atcgcgggta
     2641 ctgcgtttgc catctcccaa taacccgtcg cgtacaatac gaaaatcatc cagtgaaata
     2701 taggtaaact gcaacccacc ggtaacatcg cccatcgccc agatattgtc cgccgtggta
     2761 cgcaggtaat catccacgat gatcccgccg cgttcgttca ccgccacacc ggcgttctgc
     2821 aactgtaagc cagccgtcgc cggttttcgc cccgacgcca ccagcagggc atccacaaga
     2881 tgcgcgcctt ccggcgtttc aacttgtacc gcgccctccg ttgaggatac ggcctgtacg
     2941 ttggcgttta aaattagctc gacgcccttt tcctgtaaaa tgtgggtaat tgcctgcgcg
     3001 atatcccgat cttcacgagg caagaattgc ggcgctgctt caaagatagt gaccttcgta
     3061 ccgaagttag cgaacattga ggcaaattca aggccaatat aaccgccgcc taaaatcccc
     3121 agccgcgccg gacgctggct caggcttagt agcccggtgc tatcgaacac ccctgccgtc
     3181 gttgttaagc ccgtaatagc cgggatcacc gactctgcgc cagtattaat gaagatcttt
     3241 tctccccgta acacccgctc gccgtccgcc tgaaataccc gtaaggtatg gttatcaata
     3301 aactccgccc ttccctcaat cacatcgaca ttgtccaggt cggcaagatt atgaaaattt
     3361 ttgtcgcgta aaaaatttac gaccgccgct ttgcgttgca tggcgacaga aaaatcgccc
     3421 tcacgttccg cgtcatacac cagcgttttc gttggaatac agccaatgtt gatacaggtt
     3481 ccgccaaaca tactggcgga ctgttcgata atcgccacgc gccatcccgt cttcgccaga
     3541 gttgccgcca acgtttttcc tgccttgcca aaaccaataa tgagcgcctg atactgtgtc
     3601 atcttctttc tccgccaaat caccatctgt ttgtcaggac aagtataaat aacgtcaaaa
     3661 aagacagggt tatccgtaac gcgtcatttt ttgtcttatc gtctaaatta gcggttagga
     3721 aaaacaagga tagaaatgac attgagtccg aaatatagtg atcagagaca gaaatggtta
     3781 tccttatttt tgaaaataaa tctgttctgg agtctatatg gatgcgctta gtcggctatt
     3841 gacgcttaac gcccctcagg gctcaatcga caagaattgc ccgttaggcg gcgactggca
     3901 gttgccgcac gccgctggcg agctatcggt gattcgctgg cataccgtta cgcagggcga
     3961 agcgcaactg gaaatgccta ccggcgacgc catgacgctt acgccgggaa aggtggtgat
     4021 tctgccgcaa aactccgccc accgtttgcg ccagtctggc gaagcaccga cacatatcgt
     4081 gtgcggtagt ctacgtctgc acacgacgtc acgttatttc cttaccgcgt tgccggaagt
     4141 gttatgtctt gccccgccgc cgcatagccc cgccagtatc tggcttaacg ccgccatttc
     4201 gctgttacag caggagtcag aacgccattt acctggcgct gatgtcttat acagtcagca
     4261 gtgcgccacg ttgtttaccc tcgccattcg cgactggcta tcgcaggctg gcacggcgaa
     4321 aagcgtgctc aatttattgc tgcatccccg gctgggccgc gtgatcctgc acatgctgga
     4381 aacaccggcg catccctgga cggtcgaaac gctggtgcaa cgggtacaca tgtcgcgggc
     4441 gagcttcgcc cagctatttc gcgacgtgtc cgctacaacg cccttagccg tgttaacaac
     4501 gctgcgcctg caaatcgccg cccagaccct gtcgcgtgaa gcgctgccgg tgatggtgat
     4561 tgccgagtcg gtaggttatg cgagcgaatc ttcttttcac aaagcgtttg tccgtgaatt
     4621 cggttgtaca ccaggcgagt accgcaaacg ggtcaacgcg cttggacgat aaacgtatac
     4681 tgaacccgcc tacagtttga cgccgcaggc gggcgacaca cattatgccg caaggcgacg
     4741 atgcctgcgc agccacatca gcttgtaggc tgccggaatg atgaacagcg acagcagcgg
     4801 cgcggtaatc atgccgccaa tcatcggcgt ggcaatacgg ctcatcacct cagaacccgc
     4861 gccttttcga tcgtttttat cgcgttgctc cctcccgcca gcgtaaaggg gaaggccgcg
     4921 gtataggcct ggcaattgta aaatccatcg tcattgcgca tcagggaaaa gtttctgtca
     4981 cctccgatac gcgctactcg ttttattttg acattaccca aacacctccg ttgaactgta
     5041 gcgatagtga aaggcgctat cactagccag caaaataatc tgatataatc gtcattatcc
     5101 cgtcacgcgc caaacccaac aactgtttta ttatttctct tattaaccca caccggagaa
     5161 ataagataaa taagtttaca tcccttttag ctgtcgtttt tatttcagct ggcgtacaca
     5221 ccgcagagaa aatggaatcc cgccaattat ccgctacagc acatgagatg atgaataacg
     5281 gtgacgcctt cgcgcatcag caaatggctc agacacagaa acccagcgcc ccgactactg
     5341 tggaaaatgc gacacccttt tctgaaatgg acgactatga aaaagcaatg gtcatccatc
     5401 aatcgatgaa taatgcccat tctttctccc acgagatcca ggctgaggag caccataaac
     5461 agattaaacg caattagtta tttgcatatt agcgtcacgt actgcggatg gcacaacgtc
     5521 gcccccgcag aagcttacgg attaacataa ttttgagagg ttaaatggcg cgccctgcag
     5581 gattcgaacc tgcgacccac ggcttagatg ttcctggaac tacctgagct aacaacaagt
     5641 tatcccatta ccacggcgct cactcgcccc atcttcgaaa aacatgcaaa gctttgtgtg
     5701 tcccgttttt gtcccaaccc actcagcaat cagcagctcc aattgatcgg taacaacgat
     5761 caatt
//
LOCUS       DAJVSD010000264         5649 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.264, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000264 DAJVSD010000000
VERSION     DAJVSD010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5649
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.264"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(40..2676)
                     /gene="gyrA"
                     /locus_tag="OQP62_003945"
     CDS             complement(40..2676)
                     /gene="gyrA"
                     /locus_tag="OQP62_003945"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HCS1723363.1"
                     /translation="MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPV
                     HRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYML
                     VDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMP
                     TKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFP
                     TAAIINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEK
                     IAELVKDKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINM
                     VALHHGQPKIMNLKDIISAFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDP
                     IIELIRRAPTPAEAKAALISRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYL
                     TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLMEVIREEMEL
                     IRDQFGDERRTEITANSADINIEDLISQENVVVTLSHQGYVKYQPLTDYEAQRRGGKG
                     KSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLP
                     LEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDEL
                     IGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRG
                     EGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMI
                     TDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVT
                     EGDEDIAPEAESDDDVADDADE"
     gene            complement(3086..4288)
                     /locus_tag="OQP62_003946"
     CDS             complement(3086..4288)
                     /locus_tag="OQP62_003946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HCS1723364.1"
                     /translation="MKITSIEVFDCELKKRDQTMSSYNPVLIRVNTDSGLSGIGEVGL
                     AYGAGAKAGVGIIRDLASLIVGEDPLNIEKIWEFFFRKTFWGMGGGNVFYAGMSAIDI
                     ALWDIKGKYLGVPVYQLLGGKTNEKLRTYASQLQFGWGDKRQILVTPEEYAEAARAAL
                     DDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDAD
                     IIVEIHSLLGTNSAIQFAKAIEKYRIFLYEEPSHPLNSDNMQKVSRSTTIPIATGERS
                     YTRWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYANIYDTTVQVHVCGGPVSTVA
                     ALHMETAIPNFIIHEHHTNAMKASIRELCTHDYQPENGYYVAPEQPGLGQELNDEVVK
                     EYLAYVIK"
     gene            complement(4303..5628)
                     /locus_tag="OQP62_003947"
                     /pseudo
     CDS             complement(4303..5628)
                     /locus_tag="OQP62_003947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461216.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT         1444 a         1512 c         1262 g         1431 t
ORIGIN      
        1 aaaaagggcc ggatatccgg ccctcgcaca gcaataatat tactcgtcag cgtcatccgc
       61 aacgtcgtca tcgctttccg cttccggggc gatatcctca tccccttccg tcacgctgcc
      121 gtcgatagca tcgagttctt cgtcatctac cggttcagca acgcgttgca gacccactac
      181 gttttcatct tccgccgtgc ggataaggat aacgccctgg gtattacgtc ccaccacgct
      241 gatctcagac actcgggtac gcaccagagt accggcatcc gtgatcatca tgatctggtc
      301 gcaatcgtct acctgtaccg caccgacaac ggaaccgttg cgctcggtca ctttgataga
      361 gataacgccc tgcgtcgcac gagacttggt cgggtactcg tccgctgcgg tacgcttccc
      421 gtagccgttt tgcgttacgg tcagaatagc gccttcgccg cgtgggatga tcagagaaac
      481 tactttatcg tctcccgcca gcttaatacc gcgcacaccg gtcgcggtac gccccatcgc
      541 acggacggcg tcttctttga agcgcaccac tttacccgcg gccgagaaca gcatgacttc
      601 gtcagaacca gaagtcaggt caacgccaat cagctcgtcg ccgtcgttga ggtttaccgc
      661 gataataccg gcggaacgcg gacggctgaa ttcggtcagc gccgttttct tcacggtacc
      721 gctggcggtc gccataaaga cgttgacgcc ttcttcgtac tcacgaaccg gcagaatcgc
      781 ggtgatacgt tcgttggctt ccagcggcag caggttaacg atcggacgac cgcgcgcgcc
      841 acggctggct tccggcaact gatagacctt catccagtac agacggcccc ggctggagaa
      901 gcaaaggatg gtgtcatggg tgttggccac cagcaggcgg tcgataaagt cttcttcttt
      961 aatacgtgct gctgatttgc ctttaccgcc acgacgctgt gcttcgtaat cggttaacgg
     1021 ctgatatttc acatagccct gatgagacaa ggttacgaca acattttcct ggctaatcag
     1081 atcttcgata ttaatatcgg cgctgttggc ggtgatttcg gtacgacgct catcgccgaa
     1141 ctgatcgcga attaactcca tctcttcgcg gatcacttcc atcaggcgat cggcgctgcc
     1201 cagaatgtgc agcagttcag cgatctgctc cagcaactct ttgtattcgt cgagcagttt
     1261 ttcatgctcc aggccggtca gtttctgcaa acgcagatcc agaatcgcct gcgcctgctg
     1321 ttcagtcagg tagtattgac cgtcacgcac gccaaattct ggctccagcc attccggacg
     1381 cgcggcgtcg tcaccggcgc gctccagcat cgcagcaacg ttgcccagat cccacggacg
     1441 cgaaatcagc gccgctttcg cttccgccgg cgtcggcgcg cggcgaatca gttcgataat
     1501 cgggtcgatg ttggccagcg caatcgccag agcttcaagg atatgcgcac gatcacgggc
     1561 tttacgcagt tcaaaaatag tccgacgcgt caccacttca cggcggtggc gcacgaacgc
     1621 tgaaataata tctttcaggt tcatgatctt cggctggccg tgatgcagcg ccaccatgtt
     1681 aataccgaag gaaacctgta gctgggtctg ggagtagaga ttattaagca ccacctcgcc
     1741 caccgcatcg cgtttcactt caatcacgat gcgcatcccg tctttgtcgg attcgtcacg
     1801 cagcgcgctg atgccttcca cgcgtttatc tttcaccagc tcggcgattt tctcgatcag
     1861 gcgcgctttg ttcacctgat agggaatttc atggacgatg atggtttcac ggcccgtttt
     1921 cgcgtcagct tcaacttccg cgcgggcgcg aatgtacact ttgccacgac cggtacggta
     1981 ggcttcttcg ataccacgac gaccgttgat gatcgcggcg gtcgggaagt ccggacccgg
     2041 aatatgttcc atcagccctt caatgctgat gtcttcgttg tcgatatacg ccaggcagcc
     2101 gttaatcact tccgtcaggt tgtgcggcgg gatattcgtc gccataccta ctgcgatacc
     2161 ggaagaaccg ttcaccagca gattcggaat tttggtcggc atgacgtccg gaattttttc
     2221 cgtaccgtca tagttatcca cgaaatccac cgtctctttt tcgagatcgg ccatcagtcc
     2281 gtgggcgatt ttcgccagac ggatctccgt ataacgcatt gccgccgcgg agtcgccgtc
     2341 aatagaaccg aagttaccct gaccatccac cagcatgtaa cgcagcgaga atggctgcgc
     2401 catacgaacg atggtgtaat acactgcgga atcgccgtgg ggatggtatt taccgattac
     2461 gtcaccaacg acacgggcag attttttata ggctttgttc cagtcattgc ccaatacgtt
     2521 catggcgtaa agtacgcgac ggtgtaccgg cttcaggcca tctcggacat ccggcagcgc
     2581 acggccaaca atgacagaca tcgcataatc cagataggag ctcttcagct cttcctcaat
     2641 gttgaccggt gtaatttctc tcgcaaggtc gctcatctaa ccgctatccc tctactgtat
     2701 cccggattca aaggtcgcaa attataacac attcgcccac gtactggtaa acggaatgca
     2761 gccagacaat gctttattcg ggtgccacat gctctcttca tttataagcg tggtctcggc
     2821 gtttatcggc gatcagcttc agaggcgaca cagaggagat ctgggcctgg ccaggaatag
     2881 gctggaaaat caatacctcc cgtgtatacc cgtcatactt caagtttcat gtgcgttggc
     2941 ggcaagttac tcggcccatc cctgggcctc gccccgtcgg ggttagcgca agcgctgttc
     3001 aagacggtta accattttat cctgcaactc gaattattta ggggatatgc cgggaggcat
     3061 aaaccataat cagtatcacc agatgctatt taatcacata ggccaggtat tctttcacta
     3121 cctcatcgtt taattcctga cccaatccgg gctgttccgg cgcgacataa tagccatttt
     3181 ccggctgata atcgtgggta caaagttccc gaatagatgc tttcatcgca ttggtatgat
     3241 gttcatgaat aataaagttg ggaattgccg tttccatatg cagcgcggct accgtggaaa
     3301 caggaccgcc gcaaacatgc acctgtacag tggtgtcata aatattagca tagtcacaga
     3361 ttttctttcc ttcggtaatt ccgccgcaga gacacaaatc aggttgcgct acggcaatag
     3421 actgtttctc cagtaattcc ctgtatcccc atcttgtgta ggaacgctcg ccagtggcga
     3481 ttggaatcgt tgttgaacgg gaaactttct gcatattatc agaatttaat ggatggctcg
     3541 gttcttcata aagaaagata cgatactttt ctatcgcctt cgcaaattga atagctgagt
     3601 ttgtaccgag aagagaatgg atttctacga taatatcagc atcatccccc attgcttcac
     3661 gcatagcggc aattcgcgct tcccccattt ttaattgatc ggccagtaac aatcctgaat
     3721 agttacgatt tctattctga aaaacacagt catcgccatt acgatcgatt tcgagtggat
     3781 ccactttaat cgcatcatat ccatcgtcaa gagccgcacg cgccgcctca gcatattcct
     3841 caggtgtcac taatatctgg cgtttatccc cccaaccaaa ttgtaactga ctagcatagg
     3901 ttcttaattt ttcattagtt ttcccgccaa ggagctgata aacaggtaca cctaaatatt
     3961 tacctttgat atcccaaaga gcaatatcaa tagcgctcat tccggcataa aaaacgttcc
     4021 cgcctcccat tccccaaaaa gtctttctga aaaagaactc ccaaattttt tcgatattta
     4081 atggatcttc acccacaatc aatgacgcca gatctctgat gatccctacg ccagctttag
     4141 cgcctgcgcc ataggccagt cctacttcgc caataccact taatcctgag tcggtattca
     4201 cccggataag tactggatta taggatgaca tcgtttgatc tctttttttt aattcacagt
     4261 caaaaacttc aatagacgta attttcataa tttctccatt tatcaggttc gtgatacaac
     4321 atttgtttgt tggctttttt cttttttcac atcaattttc attaacgcca aaacggctac
     4381 cgcagcgaag caaagtattg cctctacaat aaatattcct gtcgcaccat aatgagtaga
     4441 aacgaatccc agtgacttat taatcaggaa tccgccaaga cttgaacatg agttaataaa
     4501 cgcaatgctg atagccaacc ctgacggcga caataatgca gaaggcagcg cccagtaagg
     4561 tccgtaatag ctgaggatcc caacaccata gaacgttagc cccagcattc tcagcgacat
     4621 tgaggggaca agagcaatca tcagaaaacc acagcctgcc agaaacatgg gtaatgcagc
     4681 atgccatttt cgttcattct ttttatcgga atgccagccc caccagggca tgctgaacat
     4741 agcgaaaata aacggaatac tcatgattaa accaacgtca gtatccgtaa aatcagctga
     4801 aaatcccttc accaaccccg gcaaccagta gtttgccgcc agagcagccg cctgaatcaa
     4861 catgtaggcg aaagaaagct gaagcaaaac tggatttttg attacggaaa gaaaggatga
     4921 gttggtattt ttatttaatg cagctgcggt ttcattgtca gtgcgtaatt tattaactaa
     4981 ggccgatatc tgctgtggcg taagccattt agccttttct ggactgtcag gcagtaaata
     5041 aaatgtcagg atgccaagga atacggtagg gataccttca atagcaaaaa gccagcgcca
     5101 gccttcataa tccggggtat tcaaatgctc gatgatccaa ccagacatcg gtgcagccaa
     5161 taccgatgca acagcaatag ataacatgaa gaaactattg acttttccgc gttcacgagc
     5221 cgggaaccaa catgcaagat aataaaccat gcccgggaaa aagccagctt caaatacccc
     5281 caaaaaaatg cgagccagca aaatatgttg agtatcttta gcaaaaaaaa tcagccctgt
     5341 taccgctccc cagccgataa taatggaact aattcatttt cttgcgccaa gcttttgcaa
     5401 gccaatgcta ctcggaattt gaaagattaa atatgatatg aagaatatag aagaaatatt
     5461 agcgaaatcc tcaggcgtaa taccgagaga ttcattcatg cgtaatgcag caaacccaat
     5521 attgacacga tccatatagt taaaaaagta aagaataaag gccaaaggaa tgattttcct
     5581 ttttacaata cgaattgcat cgtataaatt ttcttgtgga ctactcattt tgcatcacct
     5641 tttatgatt
//
LOCUS       DAJVSD010000265         5615 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.265, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000265 DAJVSD010000000
VERSION     DAJVSD010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5615
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.265"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            296..1234
                     /gene="ghrA"
                     /locus_tag="OQP62_003948"
     CDS             296..1234
                     /gene="ghrA"
                     /locus_tag="OQP62_003948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase GhrA"
                     /protein_id="HCS1723365.1"
                     /translation="MEIIFYHPTFNAAWWVNALEKALPHARVREWKVGDNNPADYALV
                     WQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEY
                     AASQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIIGAGVLGAKVAESLQAWGF
                     PLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPD
                     GAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHI
                     AAVTRPAEAIDYISRTITQLEKGEPVTGQVDRARGY"
     gene            1319..2056
                     /locus_tag="OQP62_003949"
     CDS             1319..2056
                     /locus_tag="OQP62_003949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase"
                     /protein_id="HCS1723366.1"
                     /translation="MYPVDLHMHTVASTHAYSTLSDYIAEAKRKGIKLFAITDHGPDM
                     EDAPHHWHFINMRIWPRLVDGVGILRGIEANIKNINGEIDCSGKMFDSLDLIIAGFHE
                     PVFAPHDKETNTQAMIATIASGKVHIISHPGNPKYPVEVKAIAQAAAKHHVALEINNS
                     SFLHSRKGSEDNCRAVAAAVRDAGGWVALGSDSHTAFTLGDFTECRKILDAVNFPEDR
                     ILNVSPQRLLAFLESRGMAPVPEFAEL"
     gene            2080..2634
                     /locus_tag="OQP62_003950"
     CDS             2080..2634
                     /locus_tag="OQP62_003950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HCS1723367.1"
                     /translation="MNEFSILCRVLGSLFYRQPQDPLLVPLFTLIREGKLAANWPLEQ
                     DDMLARLQKSCDITQISTDYNALFVGEECAVAPYRSAWVEGAEESEVRAFLTSRGMPL
                     ADTPADHIGTLLLAASWLEDQSAEDESEALETLFADYLLPWCNTFLGKVEAHAVTPFW
                     RTLAPLTRDAIGAMWDELQEEDEE"
     gene            2735..3217
                     /locus_tag="OQP62_003951"
     CDS             2735..3217
                     /locus_tag="OQP62_003951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001675581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1097 domain-containing protein"
                     /protein_id="HCS1723368.1"
                     /translation="MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQ
                     GGFKGLLISACTLLSGMVWALVIIHGSALAPHLEIVSYVLTGIVAFLMCIQAKQLLLS
                     FVPGTFIGACATFAGQGDWRLVLPSLALGLIFGYAMKNSGLWLASRREQHSANTAVTK
                     "
     gene            complement(3255..4088)
                     /gene="csgG"
                     /locus_tag="OQP62_003952"
     CDS             complement(3255..4088)
                     /gene="csgG"
                     /locus_tag="OQP62_003952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curli production assembly/transport protein
                     CsgG"
                     /protein_id="HCS1723369.1"
                     /translation="MPRLLILVAVLLLSGCLTAPPKQAAKPTLMPRAQSYKDLTHLPA
                     PTGKIFVSVYNIQDETGQFKPYPASNFSTAVPQSATAMLVTALKDSRWFIPLERQGLQ
                     NLLNERKIIRAAQENGTVAMNNRIPLQSLTAANIMVEGSIIGYESNVKSGGVGARYFG
                     IGADTQYQLDQIAVNLRVVNVSTGEILSSVNTSKTILSYEVQAGVFRFIDYQRLLEGE
                     IGYTSNEPVMLCLMSAIETGVIFLINDGIDRGLWDLQNKADRQNDILVKYRELSVPPE
                     S"
     gene            complement(4115..4531)
                     /gene="csgF"
                     /locus_tag="OQP62_003953"
     CDS             complement(4115..4531)
                     /gene="csgF"
                     /locus_tag="OQP62_003953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curli production assembly/transport protein
                     CsgF"
                     /protein_id="HCS1723370.1"
                     /translation="MRVKHAVVLLMLFSPLTWAGNMTFQFRNPNFGGNPNNGSFLLNS
                     AQAQNSYKDPAYDNDFGIETPSALDNFTQAIQSQILGGLLTNINTGKPGRMVTNDFII
                     DIANRDGQLQLNVTDRKTGRTSTIEVSGLQTQSTDF"
     gene            complement(4558..4953)
                     /gene="csgE"
                     /locus_tag="OQP62_003954"
     CDS             complement(4558..4953)
                     /gene="csgE"
                     /locus_tag="OQP62_003954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curli production assembly/transport protein
                     CsgE"
                     /protein_id="HCS1723371.1"
                     /translation="MKRYLTWIVAAELLFATGNLHANEVEVEVPGLLTDHTVSSIGHE
                     FYRAFSDKWESEYTGNLTINERPSARWGSWITITVNQDVIFQTFLFPMKRDFEKTVVF
                     ALAQTEEALNRRQIDQTLLSTSDLARDEF"
     gene            complement(4982..5608)
                     /gene="csgD"
                     /locus_tag="OQP62_003955"
     CDS             complement(4982..5608)
                     /gene="csgD"
                     /locus_tag="OQP62_003955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator CsgD"
                     /protein_id="HCS1723372.1"
                     /translation="MFNEVHSSHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQ
                     RSLEDISAGCIVLMDMMEADKKLIHYWQDNLSRKNNNIKTLLLNTPDDYPYREIENWP
                     HINGVFYATEDQEHVVSGLQGILRGECYFSQKLASYLITHSGNYRYNSTESALLTHRE
                     KEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVS"
BASE COUNT         1360 a         1303 c         1447 g         1505 t
ORIGIN      
        1 gatacgttgc cgtatacaca ctttccaggc gtgctccttc agccactcgg acacctcacc
       61 aaattgtcgc tccagcatta ctggaacggg cgctaatgta gggaaatatc ctttctacgt
      121 caatcaactt ttttaaaaaa aagcgctttt atacaaactt ccatcaatct gtggctttaa
      181 taagcgaaaa ctgctttttt tgcccgcgcc gggaaatttg ctatgctgca catcccgttg
      241 aaaacgctga taacaggcgc aatcacattc cgcacaatac tgctcaggag ataacatgga
      301 gataattttt tatcacccga catttaacgc cgcctggtgg gtaaatgcgc tggagaaggc
      361 tctcccacat gcgcgcgttc gtgaatggaa ggtcggtgat aacaaccccg cagactatgc
      421 gcttgtatgg cagcccccgg ttgaaatgct ggccggaaga cgcttaaaag ccgtctttgt
      481 gctgggcgcg ggggtggatg caattctgag taaattaaat gcgcatccgg aaatgctgga
      541 cgcctccatt cctctattcc gtctggaaga taccggaatg ggcctgcaaa tgcaggagta
      601 tgccgccagc caggtattac actggttccg tcgtttcgat gattatcagg cgctgaaaaa
      661 tcaggcgcta tggaaaccgt tgccggaata tacccgcgaa gagtttagcg tcggtatcat
      721 aggcgcaggg gtactgggcg caaaagtggc agaaagtcta caggcgtggg ggttcccgtt
      781 acgttgctgg agtcgtagcc gcaaatcctg gcctggcgtg gaaagttatg tagggcgtga
      841 agaactgcgc gctttcctga accagacgcg ggtgctgatt aatctgctgc cgaatacggc
      901 ccaaacggta ggaattatta atagcgaatt gttggatcaa ttgccggatg gcgcttacgt
      961 gctgaatctc gcgcgcggcg ttcatgttca ggaggcggat ctgctggctg cgcttgatag
     1021 cggtaagcta aaaggcgcga tgttggatgt ctttagccag gaaccgttac cgcaggaaag
     1081 tccattatgg cgccatccgc gagtcgccat gacgccgcac attgcggcag tcacccgtcc
     1141 ggcggaagcc atcgattata ttagccgcac cattacccag ctggagaagg gagagccggt
     1201 gacggggcag gtggatcggg cgagaggata ttgatatcaa cccggcgcgg gccgggtttc
     1261 gctaaaaaac gctggcgata cctgctatcc ttgtcggaaa tgactacagg agagagcaat
     1321 gtatcccgtt gacctgcata tgcataccgt cgccagcact catgcctaca gtactctgag
     1381 cgattatatc gcggaagcca aacgcaaagg cattaaactt tttgcgatta ccgatcatgg
     1441 tccggacatg gaagatgcgc cgcatcactg gcattttatt aacatgcgca tctggccgcg
     1501 tctggttgac ggcgtgggga tactgcgtgg cattgaggcg aatatcaaga atattaacgg
     1561 tgaaattgat tgttccggaa agatgttcga ctcgctggat ctgattatcg caggctttca
     1621 tgagcccgtt tttgcgccgc atgataaaga aaccaatact caggcgatga tcgcgaccat
     1681 cgccagcggc aaggtgcata taattagtca ccccggaaat ccaaagtatc cagtggaggt
     1741 taaagccatc gcgcaggcgg cggcgaaaca ccatgtagcg ctggaaatca acaactcttc
     1801 ttttctgcat tcgcgtaaag gaagcgaaga taattgccgc gcggtcgctg ccgccgtacg
     1861 cgatgcggga ggctgggtag cgttaggctc tgattcccat acggccttta cgcttggcga
     1921 tttcaccgaa tgccggaaaa ttctggatgc ggtgaatttt ccggaagatc gaatcctgaa
     1981 cgtctctccg cagcgcttac tggcctttct cgaatcacgc ggtatggcgc ctgtaccgga
     2041 atttgccgaa ctttaatcgt tatttacggg aagatatcaa tgaatgagtt ttcaatcctg
     2101 tgccgtgtgc tgggatcgtt gttttaccgc caaccgcaag atcctttact ggttccgctg
     2161 tttacgttaa tccgtgaagg taaactggcg gcaaactggc cgctggagca ggatgacatg
     2221 ctggcgcgtt tacagaaaag ctgcgatatc acgcagattt ccactgatta caatgcgtta
     2281 tttgttgggg aagagtgcgc ggtagcgcca taccgcagtg cgtgggtcga aggcgcggaa
     2341 gagtctgagg tgcgcgcttt tttaacgtcg cgagggatgc cgctggccga tacgcctgcc
     2401 gatcacattg gcactttatt gctcgcggcc tcctggctgg aagatcagtc tgccgaagat
     2461 gaaagtgaag cgctggaaac cttatttgcc gattatctgc ttccctggtg caataccttc
     2521 ctcggtaaag ttgaagccca tgccgttacg ccattctggc gcactctggc gccgctaacg
     2581 cgtgatgcga taggggccat gtgggatgaa cttcaggaag aagatgaaga ataatgtgat
     2641 gtaaatcacc attaactgca acgggttttg catcattgca taaaatgtgt gcgtgatctc
     2701 attaatgtgc cgcttttctg ttatgatgcg cgccatgaac atacttcttt ctattgctat
     2761 cactacgggc atcctttctg gaatatgggg atgggtggcc gtctccctgg ggttactaag
     2821 ctgggccggt tttttaggct gtacggctta tttcgcctgt ccgcagggcg gctttaaggg
     2881 attgttgatt tccgcctgta cgctgttaag cggtatggtg tgggcgctgg tcattattca
     2941 cggtagcgcg ttggcgccgc atctggaaat tgtcagttac gtgttgacgg ggatcgtggc
     3001 attcctgatg tgtatccagg caaagcagct attgctttct tttgttccgg gaacatttat
     3061 cggcgcctgc gcgacatttg cagggcaggg tgactggcgg ttggtattac cgtcgctggc
     3121 gctggggcta atctttggct atgccatgaa aaatagtggg ctatggctgg catcacgccg
     3181 cgagcaacat tcagcgaata cggcggtcac aaaataaaaa agcgtggggt tttccccacg
     3241 ctttgtcgta ttcatcagga ttctggcggt actgacagct cacggtattt caccagaata
     3301 tcattttgcc tgtccgcttt attctgcaaa tcccacagtc cgcgatcgat accatcatta
     3361 atgaggaaga taacgccggt ttcaatggct gacatcagac acagcatcac cggttcgttc
     3421 gaggtatagc cgatttcgcc ttccagtaag cgctggtaat caataaaacg gaacacgcct
     3481 gcctgtactt cataggaaag gatcgtttta ctggtgttca ccgaagaaag gatctcgccc
     3541 gtactgacgt taaccacgcg caggttgaca gcaatctgat ccagctgata ctgcgtatcg
     3601 gcgccaatac cgaaatatct tgcgccgacc ccgccggatt tgacgttact ttcataacca
     3661 ataatagaac cttccaccat aatatttgcc gccgtcaacg actgaagcgg gatacggtta
     3721 ttcatcgcca cggtgccgtt ttcctgggct gcgcgaataa ttttccgttc attcaaaaga
     3781 ttctgtaagc cttgtcgttc tagtgggata aaccagcgcg aatctttcag cgcggtgacc
     3841 aacatagcgg tggcgctctg cggcacagcc gtggaaaagt tacttgccgg gtaaggttta
     3901 aattggcccg tttcatcctg aatgttatat accgaaacaa agatcttacc ggtgggagca
     3961 ggtaagtgcg tcaaatcttt gtaactttgt gcgcggggca ttaatgtcgg tttcgcagct
     4021 tgtttcggcg gggcagttaa gcatccgctc aacaataaaa cggcaaccaa aataagtaag
     4081 cgcggcatga tttatatcct ttagtgactg tagcttaaaa atcggttgac tgagtttgta
     4141 aacctgacac ttcgatggtc gaggttcttc ccgtttttct gtccgtgacg ttgagctgga
     4201 gctgtccgtc gcgattagcg atatcgataa taaaatcatt ggtcaccata cgtcctggtt
     4261 ttccggtatt aatattggtc aacaagccgc ccagaatttg cgattgaata gcctgcgtaa
     4321 agttatccaa cgctgagggg gtctcgatac caaaatcgtt atcataagcg gggtctttat
     4381 atgaattttg cgcctgggcg ctattcaata aaaaggaacc gttattgggg tttccaccaa
     4441 agttaggatt acggaactgg aacgtcatat ttccagccca ggttaatggc gaaaaaagca
     4501 tgagcagcac tactgcatgt ttaacacgca tgacagcctc cggataaaaa tcatgtttta
     4561 gaattcatca cgcgctaaat cactcgtact taatagcgtt tgatctattt gtcggcgatt
     4621 taatgcttcc tctgtttgcg ctaatgcgaa gacgacggtt ttctcgaagt ctcttttcat
     4681 tggaaataaa aaggtctgga aaataacgtc ctgatttacc gttatggtga tccagcttcc
     4741 ccaacgcgca ctgggtcttt cattaatggt cagattgccg gtgtattcgc tttcccattt
     4801 gtcgctgaat gcacgataga attcatgtcc tatcgaagag acggtatggt cggttaacaa
     4861 tccgggaacc tcgacttcaa cttcattggc atgcaggttt ccggtagcga acagtaactc
     4921 tgctgctaca atccaggtca gatagcgttt catggcctta ccgcctgaga ttatcgtttg
     4981 ctcatgaaac tgcctgggtg cgatttttga cagctatctt tttgaaaaga ttataaagat
     5041 gtgtcttaac cgtattctcg ctgataaata gcgacctggc gatttcatta ttagaggcac
     5101 caatacgtaa cttattgagg atctcttttt cgcgatgagt gagtaatgcg gactcggtgc
     5161 tgttgtagcg gtaatttcct gagtgtgtaa tcaggtaact ggctaatttt tgtgaaaaat
     5221 agcattcgcc ccgcagaata ccctgtaatc cgctgaccac gtgttcctgg tcttcagtgg
     5281 cgtaaaacac gccgttaata tgaggccagt tttcaatttc acggtaggga taatcgtcag
     5341 gggtatttaa caataatgtt tttatattat tgtttttgcg gcttaaatta tcctgccaat
     5401 agtggataag cttcttatcc gcttccatca tatccattaa aacaatgcaa ccggctgaga
     5461 tatcttccag agaacgttga atattatgca gttttccggt tatggccagc gattgcttta
     5521 aatgttgcaa taatgccgta gcttgcagag atggctttgt gatcaacaat agtgtgtgac
     5581 catgactact atggacttca ttaaacatga tgaaa
//
LOCUS       DAJVSD010000266         5570 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.266, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000266 DAJVSD010000000
VERSION     DAJVSD010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5570
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.266"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            180..1400
                     /gene="arcA"
                     /locus_tag="OQP62_003956"
     CDS             180..1400
                     /gene="arcA"
                     /locus_tag="OQP62_003956"
                     /EC_number="3.5.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase"
                     /protein_id="HCS1723373.1"
                     /translation="MEKHFVGSEIGQLRSVMLHRPNLSLKRLTPSNCQELLFDDVLSV
                     ERAGEEHDIFANTLRQQGIEVLLLTDLLTQTLDVADAKAWLLDTQISDYRLGPTFAAD
                     IRAWLADMPHRELARHLSGGLTYGEIPASIKNMVVDTHDINDFIMKPLPNHLFTRDTS
                     CWIYNGVSINPMAKPARQRETNNLRAIYRWHPQFADGDFIKYFGDENINYDHATLEGG
                     DVLVIGRGAVLIGMSERTTPQGVEFLAQALFKHRQAERVIAVELPKHRSCMHLDTVMT
                     HIDIDTFSVYPEVVRPDVQCWTLTPDGRGGLKRTQESTLVHALETALGIDQVRLITTG
                     GDAFEAEREQWNDANNVLTLRPGVVVGYERNIWTNEKYDKAGITVLPIPGDELGRGRG
                     GARCMSCPLERDGI"
     gene            1411..2343
                     /gene="arcC"
                     /locus_tag="OQP62_003957"
     CDS             1411..2343
                     /gene="arcC"
                     /locus_tag="OQP62_003957"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HCS1723374.1"
                     /translation="MENKRTLVVALGGNALLKRGEPLEADIQRKNIELAARTIAQLTR
                     QWRVVLVHGNGPQIGLLALQNSAYANVTPYPLDILGAESQGMIGYMLQQALKNHLPER
                     EISVLLTQVEVDANDPAFLNPTKYIGPIYDEAQARALQAEKGWVFKADGNAFRRVVPS
                     SQPKRIVENDAIRALISRDHLVICNGGGGVPVVEKADGYHGIEAVIDKDLSAALLASQ
                     IHADALLILTDVDAVYLDWGKPTQRPLAQVTPELLREMQFDAGSMGPKVTACAEFVSH
                     CCGIAGIGSLADGQAILAGEKGTLIRCETADVDA"
     gene            2455..3459
                     /gene="argF"
                     /locus_tag="OQP62_003958"
     CDS             2455..3459
                     /gene="argF"
                     /locus_tag="OQP62_003958"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HCS1723375.1"
                     /translation="MVISLKNRNFLKLLDYTPAEIQHLIDLAIELKAAKKAGCEKQTL
                     IGKNIALIFEKTSTRTRCAFEVAAFDQGAQVTYLGPSGSQIGHKESMKDTARVLGRMY
                     DGIEYRGFGQHIVEELGEYAGVPVWNGLTDEFHPTQILADLMTMLEHAPGKTLPELSF
                     AYLGDARNNMGNSLMVGAAKMGMDIRLIAPKSFWPDAALVAQCREIASVTGARITLTE
                     SVEDGVHGVDFLYTDVWVSMGEPKEAWAERVSLMTPYQVNQQVVNATGNPDVKFMHCL
                     PAFHNEHTKVGREIEMAYGLKGLEVTEEVFESAGSMVFDEAENRMHTIKAVMVATLGD
                     "
     gene            3515..4918
                     /locus_tag="OQP62_003959"
     CDS             3515..4918
                     /locus_tag="OQP62_003959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcC family protein"
                     /protein_id="HCS1723376.1"
                     /translation="MGKFKFPTAYTILFILIALVAVMTWIVPAGKYQMAMNATLGKEV
                     PVAGTYAPVDAHPQGITAVLLAPIDGLYNHETYTAGAIDVALFVLIIGGFLGVVNKTG
                     AIDAGIERVTIKLNGKDEWMIPILMALFAAGGTIYGMAEESLPFYTLLVPVMMAARFD
                     PLVATATVLLGAGIGTLGSTINPFATVIAANAAGIPFTQGMLMRVLLLIVGYVLCVFW
                     VMRYARKVRAHPELSIVADKMAENRAHFLGNRANTLLEFTATRKWVLLIFAASFAVMI
                     YGVAVLGWWMAEISGVFLAAAIIVGVITRMGEEAFTSTFIDGARDLLGVALIIGIARG
                     IVVVMDNGMITHTILHSAESLVSGLSTTIFINVTYWLEVLLSFLVPSSSGLAVLTMPI
                     MAPLADFAHVQRDLVVTAYQSASGIVNLVTPTSAVVMGGLAIARVPYVRYLKWVAPLL
                     LILTLLNMAVLSIGAMM"
     gene            5105..5570
                     /locus_tag="OQP62_003960"
                     /pseudo
     CDS             5105..5570
                     /locus_tag="OQP62_003960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463323.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
BASE COUNT         1287 a         1495 c         1526 g         1262 t
ORIGIN      
        1 gctcatatat taagtaagaa aaatagcact ccttaattga tgtgaatctc atcacattaa
       61 caacccaaat aaaattcaat cattgctccc gaatttaact gaaacgccgc gactgcaagc
      121 acgctaaata tttgcagcca ctccttcttt attcttgaaa ttatgtaaaa ggtataatga
      181 tggaaaagca ttttgtcggt tctgaaatcg gtcaattacg cagcgtaatg ttgcatcgtc
      241 ccaatctcag cctaaaaaga cttacccctt caaattgtca ggaattactt tttgacgatg
      301 tattatccgt agagcgcgct ggcgaagagc atgacatttt tgccaacacg ctgcgccagc
      361 aagggataga agtgttgctg ttaaccgacc tgctcaccca aacactggat gtggctgacg
      421 ctaaagcctg gctactggat acgcaaattt ccgattatcg ccttgggccc acctttgccg
      481 cagatattcg cgcctggctg gcggatatgc cgcaccgtga actggctcgc catttaagcg
      541 gcggtttaac ttacggcgaa atccccgcct ccataaaaaa tatggtggtc gatactcacg
      601 atattaatga ctttattatg aagccattac cgaatcacct atttacccgt gacacgtcct
      661 gctggatata taacggcgtc tcaattaacc ccatggcgaa acctgcacgc caacgtgaaa
      721 cgaataattt acgtgctatt tatcgctggc atccacaatt cgcagacggt gatttcatta
      781 aatatttcgg cgacgagaac attaattacg accacgccac tttagagggc ggcgatgtgc
      841 tggtgattgg ccgcggcgcg gtgttgatcg gtatgtctga acgtactacg ccgcagggtg
      901 tcgagttcct ggcgcaggca ttgtttaaac atcgtcaggc ggaacgcgtc attgccgttg
      961 aactgccaaa acatcgctcc tgcatgcacc ttgacaccgt catgacccac attgatatcg
     1021 acaccttctc tgtctatccg gaagtcgttc gcccggacgt tcagtgctgg acgctgacgc
     1081 cagacggacg cggcggtctg aaacgaaccc aggagagcac gctggttcat gctcttgaaa
     1141 cagcgcttgg catcgatcag gtgcgcttaa tcaccactgg cggcgacgca tttgaagctg
     1201 agcgcgaaca gtggaatgac gccaataacg tgctcaccct gcgtcccggc gtggtggtgg
     1261 gctatgagcg caacatctgg accaacgaaa aatacgacaa agccggcatt accgtccttc
     1321 ccattcccgg cgatgaactg ggtcgcgggc gcggaggcgc acgctgcatg agctgtccac
     1381 tggaacgcga tggtatttaa aggagacgtt atggaaaaca aacgcacact ggtcgtcgcg
     1441 ctgggcggca atgcgctgct caaacgcggc gaaccgctgg aggctgatat tcagcgtaaa
     1501 aatatcgaac tggcggccag aaccatcgcc cagcttaccc ggcaatggcg cgtagtgtta
     1561 gtgcatggca acggcccaca gatagggctg ctggcgctac aaaatagcgc ctacgctaac
     1621 gttacgccct acccgctcga tattctcggt gcggaaagcc agggcatgat tggctacatg
     1681 ctgcaacagg cgctgaagaa tcatctgccg gagcgtgaaa tcagcgtcct gctcacccag
     1741 gtcgaagtcg atgccaacga cccggcattc ctcaatccaa ccaaatatat cggccccatt
     1801 tacgacgaag cgcaggcccg tgcgttacag gcagaaaagg gctgggtatt caaagccgac
     1861 ggtaacgcct tccgccgcgt tgtgccctcc tcgcagccga aacgcattgt ggaaaacgat
     1921 gccatccgcg cgctgattag ccgcgatcac ctggttatct gtaacggcgg cggcggtgtg
     1981 ccggtcgtgg aaaaagccga tggctaccac ggtatcgagg cggtgatcga caaagatctg
     2041 tccgccgccc tgcttgccag ccaaattcac gccgacgcgc tgctcattct gaccgatgtc
     2101 gacgcggtgt atctcgactg gggcaaaccc acccaacgcc cgctggcgca ggttacgccg
     2161 gagctgcttc gtgaaatgca gttcgacgcc ggttcgatgg gcccgaaagt gaccgcctgc
     2221 gctgagtttg tcagccattg ctgcggcatt gccggaatcg gctcgctggc ggatgggcaa
     2281 gccattctcg cgggcgagaa aggtactttg attcggtgtg aaaccgccga cgttgacgca
     2341 taaggctttt taccggatgg cggcttccgc cttatccggc ctacagagcg cgcataaccg
     2401 tgggccggat aagcgcagcg ccatcaggca attcatttta acaaggatat tgtaatggtt
     2461 atttcactga aaaatcgtaa ctttttgaag ctgcttgact acaccccggc ggaaatccaa
     2521 cacctcatcg atctggctat tgagctgaaa gccgcaaaaa aagccggatg cgaaaagcaa
     2581 acactgatcg gcaaaaacat cgcgctgatt tttgaaaaaa cctctactcg cacccgatgc
     2641 gcgtttgaag tcgccgcgtt cgaccagggc gcgcaggtga cttatctcgg cccaagcggc
     2701 tcgcagatcg gccataaaga gtccatgaaa gatactgctc gcgtcctggg gcggatgtat
     2761 gacggcatcg aatatcgcgg atttggtcaa cacattgtgg aagagctggg ggaatacgcg
     2821 ggcgttcccg tctggaacgg cctgaccgat gaatttcacc ccacacagat cctggccgat
     2881 ctgatgacca tgctggaaca tgcgccgggc aaaacgctgc cggaactgag cttcgcctac
     2941 ctgggcgacg cgcgcaacaa catgggcaat tcgctgatgg tgggcgcggc gaagatgggc
     3001 atggatatcc gtctgatagc gccaaagtcc ttctggcctg atgccgcgct ggtcgcgcag
     3061 tgccgggaaa tcgccagcgt taccggcgct cgtatcacct taacggagag cgttgaagat
     3121 ggcgttcacg gtgtggattt cctctatacc gacgtctggg tctcgatggg agaacccaaa
     3181 gaagcctggg cggagcgcgt cagtctgatg acgccatatc aggtcaacca gcaggtggta
     3241 aacgctaccg gtaatcctga tgtgaagttt atgcactgcc tgcccgcctt ccataacgag
     3301 cacaccaaag tgggacgcga aatcgaaatg gcttacggcc tgaaaggact ggaggtcacg
     3361 gaagaggtgt tcgagtccgc aggctcgatg gtcttcgatg aagcggaaaa ccggatgcac
     3421 accatcaaag cggtcatggt ggcgacgctc ggcgactaat cccacaggat atgcgccctc
     3481 gcggcgcata tccgtgatat caggagagaa catcatgggt aaatttaaat ttcccaccgc
     3541 ttataccatc ctgtttattc ttattgccct ggtcgcggtg atgacctgga ttgtgccggc
     3601 gggaaaatac caaatggcga tgaacgccac gctgggaaaa gaggtgccgg tggcgggaac
     3661 gtatgccccc gtggacgcgc atccgcaagg gattaccgct gttttactgg cgccgattga
     3721 cggcctctat aaccacgaaa cctacaccgc cggcgccatt gacgtcgcgc tgtttgtctt
     3781 gattatcggc ggctttctgg gggtggtgaa taaaacgggg gcgattgatg ccggtattga
     3841 acgggtaact atcaaactca acggcaaaga tgagtggatg atccccattc tgatggcgct
     3901 gttcgccgca ggcggcacta tctatggcat ggcggaggag tcgttgccct tctacacgct
     3961 gctggtgccg gtcatgatgg cggcccgctt cgatccgtta gtggcgacgg caaccgtact
     4021 gctcggcgcg gggataggca cgctcggttc gaccattaat cctttcgcca cggtcattgc
     4081 cgccaacgcc gccggcatcc cttttacgca gggcatgctg atgcgtgtac tgctgttaat
     4141 tgtcggctac gtactgtgcg tgttttgggt aatgcgctat gcgcgcaaag tccgcgccca
     4201 tcctgagctt tctatcgtgg cggataaaat ggcggaaaac cgcgcccatt tcctcggcaa
     4261 tcgcgccaat acactgctgg agtttacggc tacccggaaa tgggtgctgc tgatcttcgc
     4321 cgcctctttc gcggtgatga tttacggcgt ggcggttctc ggctggtgga tggcggaaat
     4381 ctccggcgtc tttctggcgg cggcgattat cgttggcgtg ataacgcgga tgggcgagga
     4441 agcgttcacc agtaccttta tcgacggcgc gcgggatttg ctcggcgtgg cgctaattat
     4501 tggtatcgcg cgcggcattg tggtggtcat ggataacggt atgattaccc acaccatttt
     4561 gcacagcgcg gaaagtctgg tttccggcct ctctaccacc attttcataa acgtaaccta
     4621 ctggctggaa gtattgctct ccttcctggt gccctcctct tccggtcttg ccgtattgac
     4681 gatgcccatt atggcgccgt tagcggattt tgcccacgta cagcgggatt tggtcgtaac
     4741 cgcctaccag tcggcctccg ggattgtgaa cctggttacg cccacctccg ccgtggtcat
     4801 gggcggtctg gcgatcgcgc gggttcccta tgttcgctat ctgaaatggg tcgcgccgct
     4861 gttgctgatc ctgacattgc tgaatatggc ggtactgagc atcggagcga tgatgtaacg
     4921 agccagatgg cgacgcgtct tatccgacag gactgataag cacagcgcca tcaggcacgc
     4981 cgtcaccttt tttgatcagc ttctcatttt cctgcaaaac cgcccgattg atccgcaatc
     5041 aatgtgacaa atgtgataaa tttcgccagt ccgttgatat caataataaa gataaggtgc
     5101 atttatgaag gaatacgatg attactccgc caaagaacaa cagcaactgg cggtttgtca
     5161 gcgcctgatt agtgaaataa agttacctgt cccaggagga gattcgccgc gatttacaaa
     5221 atgagggatt tgaaggtatc agtcagtcta cggtttcgcg cctgctcaag ctgctgggcg
     5281 caataaaaat cagaaatgcg aaaggacaaa agatttattc cgtaaatccc cagcagcgtc
     5341 cttcgccgga tgccggacgt tcaatagccg aaatggtcgt cagcgttgaa cataatagcg
     5401 aatttatcct tatccatacg gcggcaggtt atggtcgcgc cgtcgcgaga attctggatt
     5461 accacgcatt gccggaaatt ctcggcgtcg ttgccggtag cagtattgtc tgggtcgcac
     5521 cacaggtcgt tcagcgcacg gcgctggtac acaaacaaat taattatttg
//
LOCUS       DAJVSD010000267         5541 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.267, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000267 DAJVSD010000000
VERSION     DAJVSD010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5541
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.267"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            14..850
                     /locus_tag="OQP62_003961"
     CDS             14..850
                     /locus_tag="OQP62_003961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000488538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1311 domain-containing protein"
                     /protein_id="HCS1723377.1"
                     /translation="MFRKAVTLLFLLSPAVSYAGLFDSTPELKCGNDNAVTAAKEWIY
                     NEALGRLQQDYIKEPSTLFFDIPQTQYEQQLRAIPVQFSDVITQNPQPENANLRTCSA
                     TVAMSIPQPLFKLMKDLPNTLFYISQGDGQVINNTVTWKQVNYNIQLADNNKDIVVTP
                     VQKTDKLARSIYVMARMTVSGDSIIKKKNNSLIEIAAKKFESRDRELNQVWNSLPTSA
                     RTALKQEQRVWVTKKEQQCGKLSDAKSEDIPAEKRISIYKCQLEMTIARTTYLDGSEL
                     PD"
     gene            927..1721
                     /locus_tag="OQP62_003962"
     CDS             927..1721
                     /locus_tag="OQP62_003962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HCS1723378.1"
                     /translation="MELLNQLKRLCRALRGTPNSWPAIDLSLPGGRHLHLVGSIHMGT
                     RDIAPLPAKLVKKLRQADALVVEADISGNETPFSNLPKCPPLVERLSAGLLNTLEKRV
                     SELGMPLIHFDNQPLWQIAMVLQATQAQRLGLRPDYGIDYQLLQAAREMSLPVQELEG
                     AKHQLELLCDLPDGGMALLDDTLTHWHTNARLLQVMIGWWLEQPPTSIGASLPRTFSQ
                     PLYDVLMVKRNEAWRDALLALPPGRYVVAVGALHLYGEGNLPQILK"
     gene            1922..2401
                     /gene="ybaK"
                     /locus_tag="OQP62_003963"
     CDS             1922..2401
                     /gene="ybaK"
                     /locus_tag="OQP62_003963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK"
                     /protein_id="HCS1723379.1"
                     /translation="MTPAVKLLEKNKIPFNIHTYDHDPNETNFGDEVVRKLGLNADQV
                     YKTLLVAVNGDMKQLAVAVTPVAGQLDLKKVAKALGAKKVDMADPMVAQRTTGYLVGG
                     ISPLGQKKRLPTLIDAPARTFATIYVSGGKRGLDIELAADDLAAILSAKFADIARRD"
     gene            complement(2518..4169)
                     /locus_tag="OQP62_003964"
                     /pseudo
     CDS             complement(2518..4169)
                     /locus_tag="OQP62_003964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459489.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
     gene            4342..>5541
                     /locus_tag="OQP62_003965"
     CDS             4342..>5541
                     /locus_tag="OQP62_003965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1723380.1"
                     /translation="MAMSEPTQPLAGAPAAAAKARTSFGILGAISLSHLLNDMIQSLI
                     LAIYPLLQAEFSLTFVQIGLITLTFQLASSLLQPVVGYWTDKYPMPWSLPVGMCFTLS
                     GLVLLAMAGSFGGVLLAAALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFG
                     SSLGPLLAAVIIAPYGKGNVAWFVLATLLAIVVLAQISRWYAAQHRIAKGKPKAIIAN
                     PLPRNKVVLAVSVLLLLIFSKYFYMASISSYYTFYLMQKFGLSIQNAQLHLFAFLFAV
                     AAGTVIGGPVGDKIGRKYVIWGSILGVAPFTLVLPYATLYWTGILTVIIGFILASAFS
                     AILVYAQELLPGRIGMVSGLFFGFAFGMGGLGAAVLGLIADHTSIYLVYKICAFLPLL
                     GILTIFLP"
BASE COUNT         1295 a         1477 c         1370 g         1399 t
ORIGIN      
        1 ggatgtgtta tttatgttta gaaaagcagt tacgcttctt ttcctgcttt ctcccgcagt
       61 tagttatgca ggattatttg attccactcc agagttaaaa tgtggcaacg ataatgcagt
      121 cacggcggca aaagagtgga tttacaatga agcattaggt cgtttacagc aagactatat
      181 taaagagccc tccacgcttt tcttcgatat cccccagact caatacgagc agcaactccg
      241 ggctattcct gttcaattca gtgatgtaat cacgcagaac cctcaaccag aaaatgccaa
      301 cctacgaact tgctcggcta ccgtcgccat gagtattcct cagccattgt ttaaattaat
      361 gaaagactta ccaaatactc tattctatat ttcacaaggg gatggacagg taataaacaa
      421 tacggtgacc tggaaacagg ttaactacaa tattcagcta gcagacaaca ataaagatat
      481 tgttgtcacc cctgtgcaga aaaccgataa attggcgcgg tctatttatg taatggcaag
      541 aatgacggta tctggtgata gcattataaa gaaaaaaaat aactcactga ttgaaatcgc
      601 agcaaagaaa tttgagagta gagatcgcga gcttaatcag gtctggaatt cgctacccac
      661 ctctgcccga acggcattaa aacaagagca gcgagtctgg gtgacaaaaa aagagcaaca
      721 gtgcggcaaa cttagcgatg caaaatccga ggacatacct gctgaaaagc gcatcagtat
      781 ttataaatgc cagcttgaaa tgaccatcgc cagaacgacc tatctcgacg gcagcgaact
      841 acccgactga tcgttgacgt cccgtcaggg cgcattgcgc ccttttctcc aacgcgctag
      901 catgagcttt ttcaaaggga gcgcgtatgg agctattaaa tcaacttaaa cgtttatgcc
      961 gcgcgctgcg tggtacccca aatagttggc ctgctatcga tctctccctg cccggcggtc
     1021 gtcatctgca tctggttggc agtattcata tggggacgcg cgatatagct cctcttccag
     1081 caaagctggt gaaaaagcta cgccaggccg acgcgctggt cgttgaagcg gatatttccg
     1141 gtaacgaaac gccattcagc aatctcccca aatgcccgcc gttggtcgaa cgtctcagcg
     1201 ccgggctgct aaacacactg gaaaaacggg tcagcgagtt gggtatgccg ctgatccatt
     1261 ttgataatca acctttatgg cagatagcta tggtgctaca ggccacgcag gcgcaacggc
     1321 tgggattgcg cccggactat ggcattgatt atcagctatt acaggctgcc cgcgaaatgt
     1381 cgctgccggt gcaagagctg gaaggggcga aacaccagct cgaactacta tgcgatctgc
     1441 ccgatggcgg gatggcgctg ctcgacgaca cgctgacgca ctggcacacc aacgcacggc
     1501 ttttgcaggt gatgatcggc tggtggcttg aacagccgcc gaccagcatc ggcgcttcgc
     1561 tccccagaac gtttagccaa ccgctgtatg atgtactgat ggtgaaacgc aatgaagcct
     1621 ggcgcgacgc gctgctggca ctgccaccgg gacgctacgt ggtagccgta ggggcgctac
     1681 atctgtacgg cgaaggcaac ctaccgcaaa tattgaaata aaaaatggcc aatatcgcta
     1741 ttggcccgtc aaagaggaat ttcatcgtta ttattatccc gacgctttcg cttcggatct
     1801 tcagattgtc gctcaaagtt gccgcaactg ccaagaccta atgcacaaga ttatactatt
     1861 ttttagtccg ctttcgggcg tatgctgatg gcaaatcacg tctgtagtaa gaaggaacgt
     1921 tatgacaccc gcagttaagt tactcgaaaa gaacaagatt ccgtttaaca ttcacaccta
     1981 cgatcacgat ccgaatgaaa ctaactttgg cgatgaagtg gtgcgtaagc tcgggctaaa
     2041 cgccgatcag gtgtataaaa cgcttttggt tgccgtgaat ggcgatatga agcaactggc
     2101 cgtcgccgtg acgcctgtag ccgggcagct ggatttgaaa aaagtcgcca aagctctggg
     2161 cgcgaaaaag gtcgatatgg ccgacccgat ggtggcgcaa cgcaccacgg gatacctggt
     2221 cggcgggatc agtccgctgg gacagaagaa acggctgcct acgctgattg acgcgccagc
     2281 ccgcacgttt gccactattt atgtttccgg tggtaaacgc gggctggata ttgaactggc
     2341 ggctgacgat ttggccgcca tcctgagtgc taaattcgct gatatcgcgc gtcgggatta
     2401 agcctgcgta aaatacattg ccggatagcg gcgcaaacgc cttatccggc ctacagcata
     2461 cataatccgt aggccttaag gctgtgcgcc atcaggcaga gatggctatc agtaccgcta
     2521 cagccagttc acctcgccat ttggcgtaaa cgccgccgca tccaacggtg aattctgctg
     2581 aataaactct ttcagcactt ccgcgtcaat aaacccggta ttcacgtagc ccggtttgtt
     2641 atcgatgcgc ggataaccat cgccgcccgt ggcgttgaaa ctcagcgtcg ccatgcggta
     2701 ggttttggcc ggatcaacag gctcgccttt gattttcaga tcggtgagct tgccctcttt
     2761 ggcgacaaag ctcacattgg cgaactgtgg ataggcgccg gagtccggtt tcatctgcgc
     2821 tacggcggtg agataatcaa ccacctcttt gccgctcata tcggcataca ccacaatgtt
     2881 gccgaacggc tgtaccttga gcacgctttt ataggtaata tctcccgcct caatcgagtc
     2941 gcgaataccg ccgccgctca tcacgccaaa atcggcaccg gtgcgcgcga tctgcgcagc
     3001 cagaatcacc cgtcccatat tggtctggac aaatctgacc ttactgcgat cgccttcaag
     3061 caggccattc acgctaccaa ttttcacctc cagttgcgct ttacctttat tctggaacgg
     3121 cgttaataac gagagcattt gcggattttc ggcgatttcc ggcgtgtaaa gtacacgctc
     3181 gcttttcccg ttatcccagg tcactttttt cttgagattt accggaataa gctggtagtt
     3241 aaccattttc atctcgccgt tacggaattc gaaatccgcg tggcccacat atttacccca
     3301 ctcatgcgcc tgcacgctcc agatgccatt ttgcttatcc ggcgcgcagg gcgttcccgt
     3361 tacgtaattc acctgttttt attttccgac gccatgcata ccgggtcttg tgagtgaccg
     3421 cccacaatca tcgccagcga accggcaggc agactacgcg ccatctcaac gtcgcccggc
     3481 gcattcgaac cgtgatcgcc gttgtcataa tgtcccatat gcgtggtcgc gataatcacg
     3541 tccggttttt cattcatatt aagttcctga atcaccacct ttgcttcttc agcaggttta
     3601 cgaaactcaa tatcggtgaa atattccggg ttgcctattt tcgccgtgtc atcggtggtt
     3661 aagccgatta ccgcgatttt tatatcctgg cgtgtaaaaa tagcccacgg cttaaacaga
     3721 cgctcgccgg tacttttttg ataaatattg gcggaaagaa agggaaactt cgcccacttt
     3781 tcctgctggc gcaatacggt gagcggatta tcaaattcat gattaccgac ggccatagcg
     3841 tcgtagccaa tcagattcat cccgcggaaa tcgggctcca catcctggag atcggattcc
     3901 ggcactccgg tattaatgtc gccgccggat aacaacagga cgcttccccc ctcttgcgcc
     3961 acctctttac ggatactgtc caccagcgtt ttttgcgccg ccagaccata ttcgccatat
     4021 tcgctgcgcc agaagtgacc gtggtgatcg ttggtatgca ggatagtaat tttataggtt
     4081 ttatcttttt cgtaagcctg tgcaggctga gtcgtcagcg cgaacgccgc cagtaacgcc
     4141 agcgccacac cccgtttcaa aaatttcatc tttctctccc tgactcaata tcaaccgcag
     4201 aaattacctt tccttgcaat aatagacaaa tatgttttca gaattgagac ttccttcaaa
     4261 cacatttcac aggtatgtta ggcaagtaat aattacacat cctactatct ccaacatcgc
     4321 ataaaattta agtgactttc tatggccatg agtgaaccaa cccagccgtt agccggcgcg
     4381 cccgcagcgg ccgctaaagc acgtacttcg tttggtattt tgggcgcgat cagtctttcc
     4441 catctgctga acgatatgat ccagtcgcta atcttagcta tttatcccct gttgcaggcg
     4501 gagttttcgc tgactttcgt ccagataggt ttgatcaccc tgacgttcca gctcgcctca
     4561 tcgctactgc aaccggtcgt cggctactgg acggataaat atcccatgcc gtggtcgctg
     4621 cctgtcggca tgtgttttac cctgagcggg ctggtactgc tggcaatggc gggaagtttt
     4681 ggcggcgtat tgctcgctgc ggcgctggtg ggtaccggct cgtccgtttt tcacccggaa
     4741 tcgtcccgcg tggcgcgcat ggcctccggc ggacgtcatg gtctggcgca gtctatcttc
     4801 caggtcggcg gtaacttcgg cagttcattg ggcccgctgc tggccgccgt gattatcgcg
     4861 ccctatggca aagggaatgt cgcctggttt gtgctggcca cgctgctggc gatcgtggtg
     4921 ctggcgcaga tcagccgctg gtatgcagcc cagcaccgga tagcgaaagg caagccaaaa
     4981 gcgataatcg ctaacccgct gccgcgcaat aaagtcgtgc tggcggtcag cgtgttattg
     5041 ctactcattt tctcgaaata tttctatatg gcgagcatca gtagctacta caccttttat
     5101 ctgatgcaaa aattcggatt atcaatacaa aacgcgcagc tccatctgtt tgccttcctg
     5161 tttgcggtgg ctgccgggac ggttatcggc gggccggtgg gcgataaaat cggcagaaaa
     5221 tatgtgattt ggggctctat tctcggcgtc gcgccgttta cccttgtttt accctacgcc
     5281 acgctgtact ggacggggat tttaacggtg attatcggct ttattctcgc gtcggcgttt
     5341 tccgccattc tggtgtatgc ccaagagctg ctgccaggac gcatcggcat ggtttccggc
     5401 ctgtttttcg ggtttgcctt cgggatggga ggcctgggcg cagcggtgct ggggctgatt
     5461 gcagaccata ccagtatcta tttagtttat aaaatctgtg cttttctgcc gcttctgggg
     5521 atactgacca tattcttacc t
//
LOCUS       DAJVSD010000268         5485 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.268, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000268 DAJVSD010000000
VERSION     DAJVSD010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5485
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.268"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            202..546
                     /locus_tag="OQP62_003966"
     CDS             202..546
                     /locus_tag="OQP62_003966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HCS1723381.1"
                     /translation="MYLNRFCYLLLISAAVGSIFTSYPVAMWFLLANVLTLAIYGVDK
                     TAARKTWRRVPESTLLVFGVVGGWPGAIVGQQLFRHKTQKQPFKTYFIASVIVSIVVT
                     VAIYRLYPFLSY"
     gene            complement(667..807)
                     /locus_tag="OQP62_003967"
                     /pseudo
     CDS             complement(667..807)
                     /locus_tag="OQP62_003967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460590.1"
                     /note="involved in bacterial survival in the host cell;
                     incomplete; partial in the middle of a contig; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pathogenicity island 2 effector protein SseJ"
     gene            808..1908
                     /locus_tag="OQP62_003968"
                     /pseudo
     CDS             808..1908
                     /locus_tag="OQP62_003968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460583.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
     gene            1957..3465
                     /locus_tag="OQP62_003969"
     CDS             1957..3465
                     /locus_tag="OQP62_003969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase/lipase family protein"
                     /protein_id="HCS1723382.1"
                     /translation="MLNPSIPLVATRHGKIVGVVQEEIHIWRGIPYAAPPTGELRWRA
                     PQPVTPWQDVRQADCFSCASWQDITWCRELGGGDPGNFSEDCLYLNVWAPAVRHEPLP
                     VMVWLHGGGYTIGAGSLPPYDGQALAKRGAIVVTVNYRLGHLGFFAHPALEGEGAECI
                     HNFALLDQIAALRWVQDNIAAFGGDTQNVTLFGESAGARSVLSLMASPLAKGLFHKAI
                     IQSGYTLPDTPREVALKKGVALAEHLGLAHATAEQLRALPAETFWPLDAPFKIAPTPI
                     SGDVVLPHPMLETFFAAKQHPIPVMIGSNSDEASVLAVFGVDIAGQIQKMRRERRVGL
                     GLIRLLYPGVKGDEALGRQVCRDMVFTTLGYVVMQAQKRIGEPCWRYWFDYVAEAEHN
                     TYANSACHGNEIPYVFDTLTRAEPTCHYVNENDLAFASQVADYWVNFARHASRTRDVL
                     HGPVRWPASIRGRDRLLRIGLNKLAGFKVENRFMRARLALFKRVMKHHVSLE"
     gene            3685..5340
                     /locus_tag="OQP62_003970"
     CDS             3685..5340
                     /locus_tag="OQP62_003970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucan biosynthesis protein"
                     /protein_id="HCS1723383.1"
                     /translation="MNRRRFIKGSMAMAAVCGSSGIASLFSQAAFAAESDIADGKIVR
                     FDFAGLQSMAQALAKKPWGGAPGPLPDTLANLTPQAYNSIQYDAAHSLWNGVANRQLD
                     IQFFHVGMGFRRRVRMFSVDTTTHLAREIHFRPELFKYNDAGVDTTQLEGQSDLGFAG
                     FRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDGQEEFPDFTAFW
                     FDTAKPGDTTFTVYALLDSASVTGAYKFVIHCEKTQVIMDVENHLYARKDIKQLGIAP
                     MTSMFSCGNNERRVCDTIHPQIHDSDRLAMWRGNGEWICRPLNNPQKLQFNAYMDDNP
                     KGFGLLQLDRDFSHYQDVMGWYNKRPSLWVEPRSKWGKGAVSLMEIPTTGETLDNVVC
                     FWQPEKAIKAGDTLAFNYRLYWSAQPPVQSPLARVMATRTGMGGFPEGWAPGEHYPDK
                     WARRFAIDFVGGDLKAAAPKGIEPVITLSSGEAKQVEILYVEPFDGYRIQFDWYPTSD
                     STAPVDMRMFLRCQGEAISETWLYQYFPPAPDKRRYVDDRIMR"
BASE COUNT         1190 a         1360 c         1553 g         1382 t
ORIGIN      
        1 gtaacatttt tggtggcttt acccatttta atcgtgttca caacacgtta attaccttat
       61 gattaccatg gtaattaaaa atgaatcctc gatgactcga tgactcgttg gctgaatgaa
      121 aagaaaattc tgcatcacat aggcgcatgt atcgcgtata atgggctccg atgtccctaa
      181 tcattgctat gacataataa tatgtatctt aaccgctttt gttatttact cctgatctct
      241 gctgcggtcg gaagcatttt tacatcgtat cccgtcgcga tgtggttcct gctcgccaat
      301 gtgctaacgc tggcgatcta cggtgtagat aaaacggcgg cacgtaaaac ctggcgcaga
      361 gtgccggaat ccactttgtt ggtgtttggg gttgtcggtg ggtggcctgg tgcgattgtt
      421 ggtcaacaac ttttccgtca taaaacgcaa aagcagccat tcaaaacata ctttatcgcc
      481 agtgtgatag tgagtattgt agttacggtg gcgatctatc gactctatcc atttttgtcc
      541 tactgaacat agagtatgga tcacttattg accaaccggc agcaaagaca acctcatatt
      601 ttcatgtcac cggcactatg atattgagcg gtgttttgct caaggcgtac cgcagccgat
      661 ggaacattat tcagtggaat aatgatgagc tataaaactt tctaacattg tggcaaaaca
      721 atgatggact tcctgggttg gatggacaaa gtcattgaag acgtattgcg gacatatatc
      781 tagctgaggg tctttagccc cgggaacttg cgtcggatat tcgccatcat ggggatgtac
      841 ccagtaagtt attacgatct ctctcaggcg ggcgtgcctg tgcactccac ggcatttcgt
      901 cccattgacg aggcttcgct ctcgcgtaat ccctttcgca tgttcacttc gctattacgc
      961 ctggagctca ttgaaaacgc ggcattacgc cagcgggcgg cggaaatctt atcgcagcgt
     1021 gatattttta catcgcgctg ccgacaattg ctggatgagt acgacgagca gggcggtttt
     1081 agtgctgctc aggccgaaga gttcgtccgt gaaacgctgg agacttttcg ctggcatcgt
     1141 caggctaccg ttgatgaaga aacgtaccgc agcctgcatc gtgagcatcg tttaattgcc
     1201 gacgtggtct gttttccggg atgccacatt aaccatctga cgccgcgtac tctggatatc
     1261 gaccgggtac aggccatgat gccggagtgc ggcattacgc ctaaaattct tatcgaaggt
     1321 ccgcctcgcc gcgaagtgcc tattctgttg cggcaaacca gtttcaaagc tctggaagag
     1381 caggtgctct tcgttgatga aaagcagggt acgcacacgg cgcgcttcgg cgaaattgag
     1441 caacgtggcg tcgcgctgac gccaaaaggt cgtcgattat atgacgaact gttgcacaag
     1501 gcgggaacgg gtaaggacaa cttcacgcat caactccatt tgcgggaggt ctttaacgcc
     1561 tttccggata gcgaatttct gcttcgcctg caggggcttg cctggttccg ttatcgctta
     1621 acgccttccg gcgaggcgca tcgtcaggcg atccatcctg gcgacgatcc gcagccgctt
     1681 attgagcgcg gttgggtgat cgcgcagccg attacctatg aagattttct tccggtcagc
     1741 gcagccggca tttttcagtc gaatttggga aatgaaacgc tggccagaag ccacggcaat
     1801 gccagccgcg acgcctttga acaggcgctg ggatgtgctg tacgggatga attttcgtta
     1861 tatcaggaag cggaagaacg cagtaaacgc cgttgcggtc tgctttaaaa gcggtaagct
     1921 tcacaggctg tgaggatact gtaaaaggaa ggcgttatgt tgaatccctc catcccgctg
     1981 gtggcgacgc gtcacggtaa aatcgtgggc gtcgtacagg aagaaatcca tatctggcgc
     2041 ggtatacctt atgccgcgcc gccaacaggg gagctacgct ggcgtgcgcc gcagcctgtt
     2101 acgccctggc aggatgtgcg ccaggcggat tgtttctcct gcgccagttg gcaggatatt
     2161 acctggtgtc gcgaactcgg cggcggcgat ccgggaaatt tttccgaaga ctgtctctat
     2221 ctgaacgtct gggctcccgc cgtgcgtcat gaaccgttgc cggtcatggt ctggctacac
     2281 ggcggcggtt acaccattgg cgcggggagt ttgccgccct atgacggtca agcgctggcg
     2341 aagcgcggcg cgatcgtggt gacggtcaat tatcggcttg gccatctggg ctttttcgcg
     2401 catccggcgc tggaaggcga aggggcggag tgtattcata atttcgcttt actcgatcaa
     2461 atcgctgcgc tgcgttgggt gcaggacaat attgccgcat ttggcggcga tacgcagaat
     2521 gtgacgttat ttggcgaatc cgccggcgcc cgcagcgtgc tgtcgttgat ggcttcgccg
     2581 ttggcgaagg ggctttttca taaagcgatt attcagagtg gttatacgct gccggatacg
     2641 ccccgcgagg tggcgctaaa aaaaggcgtt gcgctggcgg aacatcttgg tttagcccat
     2701 gccactgccg aacagctacg cgctttaccg gcagagacgt tttggccgct ggacgcgcct
     2761 tttaaaattg cgccgacgcc gatttccggc gacgtcgtgc tgccgcatcc gatgctggaa
     2821 accttctttg cggcgaaaca gcatccaata ccggtgatga tcggctcgaa tagcgatgaa
     2881 gccagcgtat tggccgtttt tggcgtcgat attgccggtc aaattcaaaa aatgcgccgt
     2941 gagcggcgtg ttggcttggg gttaatccgg ctgctttatc ctggagtgaa aggcgacgaa
     3001 gcgctagggc ggcaggtctg tcgggatatg gtatttacca cgttgggtta tgtcgtcatg
     3061 caagcgcaga agcggatcgg cgaaccgtgc tggcgttact ggtttgatta tgtcgccgag
     3121 gcggagcata acacctacgc gaatagcgcc tgtcatggca atgaaatacc gtatgtattc
     3181 gatacgttaa cgcgggctga gcccacatgc cattatgtga atgagaatga cctggccttt
     3241 gcctcgcagg tggcggatta ctgggtgaat ttcgctcgtc atgccagccg cacgcgcgac
     3301 gtgctgcacg gcccggttcg ctggcccgcc agcattcggg ggcgagatcg tctgttgcgg
     3361 attgggctga acaaacttgc cggttttaaa gtggaaaacc gctttatgcg tgcgcgtctg
     3421 gcgctgttta aacgagtcat gaaacatcac gttagtctgg aataaacttt tcataacctg
     3481 aagaatgctg cgtgaggttt acatccgatt cggtcggttc ttatcgacat aaaatattta
     3541 cgcttttgca cagtttccag gcgaccaaca attggattat taatgaattt tgtctagagt
     3601 gagcggtcag aaacgggcac attcttgctg ctgaaaaaac cagcgcggga ccattcacaa
     3661 gaccagaagg actcattttc aggtatgaat cgtagacgat ttattaaagg ttcaatggca
     3721 atggccgccg tgtgcggttc cagcggtatt gcttcactct tttctcaggc ggcgtttgcc
     3781 gcggaatccg atattgcgga tggtaaaatt gtccgttttg attttgctgg tctgcaatca
     3841 atggcccagg cgttagcgaa aaagccctgg ggtggcgcgc cgggaccctt gccggatacg
     3901 ctcgccaatc tgacgccgca ggcctataac agcattcagt atgacgcggc gcattcactc
     3961 tggaacggtg ttgccaaccg gcagctcgat attcagtttt tccacgtagg gatgggcttc
     4021 cgtcgtcgcg tacgcatgtt ttccgttgat acgacgacgc atcttgctcg cgagattcat
     4081 tttcgcccgg aactgtttaa atacaacgat gccggcgttg atacgacgca actggaaggg
     4141 cagagcgatc tcggtttcgc cggtttccgt gtctttaaag cgccggaact ggcgcggcgc
     4201 gatgtcgtct ccttcctggg cgccagttat ttccgggcgg tagatgatac ttatcagtat
     4261 ggcctgtcgg ctcgcgggct ggcgatagat acctatactg acggtcagga agagttccct
     4321 gacttcaccg cattctggtt tgacaccgcg aagccgggcg atactacgtt taccgtttac
     4381 gctctgctgg acagcgccag cgtgacgggc gcgtataagt ttgtgatcca ttgcgaaaaa
     4441 acgcaggtga tcatggatgt agaaaaccat ctctacgccc gtaaagatat aaagcaactt
     4501 ggcattgcgc cgatgaccag tatgtttagc tgtgggaata atgaacgccg ggtatgcgac
     4561 accattcatc cgcaaattca cgattccgat cggctggcga tgtggcgggg taacggcgag
     4621 tggatttgcc gcccgctgaa taatcctcag aaattacagt tcaacgcata tatggacgat
     4681 aacccaaaag ggttcggcct gctgcaactc gatcgcgatt tctcgcatta tcaggatgtc
     4741 atgggctggt acaacaaacg tccgagcctg tgggtggagc cgcgcagtaa gtgggggaaa
     4801 ggcgcggtta gcctgatgga gatcccaacc actggcgaaa ctctggataa tgtggtctgt
     4861 ttctggcagc cggaaaaagc gatcaaagcc ggggatacgc tggcgtttaa ttatcgtttg
     4921 tactggagcg cgcagccgcc ggtacaatcg ccgcttgcgc gggtcatggc gacccgtaca
     4981 gggatgggcg gctttcccga aggctgggcg ccgggcgaac attacccgga taaatgggca
     5041 cgccgttttg ctattgattt tgtcggcggc gatctgaaag cggccgcgcc aaaaggcatt
     5101 gagccggtaa ttacgctctc cagcggtgag gcgaagcagg ttgagatcct ctacgtagag
     5161 cctttcgacg gttatcgtat ccagtttgac tggtatccga cctcggattc tacggcaccg
     5221 gtggatatgc gtatgttcct gcgctgccag ggggaggcta tcagcgaaac ctggctgtat
     5281 cagtatttcc cgcccgcgcc ggataagcgc cgttatgtcg acgatcgtat catgcgttag
     5341 tcagtttgcc ttctgtaccg ccacaaaggc ggtacaggtt gcggaaattg ccatgacata
     5401 aacccattcg tgagccgctg tttttgtgac acggcctttt catcgttcta tttttgcaac
     5461 agtccttcct gtttatccct ctcga
//
LOCUS       DAJVSD010000269         5483 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.269, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000269 DAJVSD010000000
VERSION     DAJVSD010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5483
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.269"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            1..5483
                     /locus_tag="OQP62_003971"
                     /pseudo
     CDS             1..5483
                     /locus_tag="OQP62_003971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001169948.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter adhesin BigA"
BASE COUNT         1417 a         1514 c         1527 g         1025 t
ORIGIN      
        1 cccagtaata tcgcctccct gcctaaagaa aaacgcgcaa aactctcacc gacctgcctt
       61 gctacattac ctgaaaatga taatcactgg ggctgggttg ctggcggcgt tgccgcattg
      121 gtcgcgggtg tggttattgg cgttgaaaat aacggtggcg gagattctac tcattcttat
      181 attcccccta cgcccgacga tggcggcaat gtcaccccgc ccgacgatag cggcgatgac
      241 gatgtaaccc cgcccgacga tagcggcgat gacgatgtga ccccgcccga tgacgacgac
      301 acgcccccgg atgactctgt tataaccttc agcaacggcg tcaccatcga taaaggcaaa
      361 gacaccctgg ccttcgatag cttcaaactg gatagcggca gcgttctcga gggtgccgtg
      421 tggaattatt cagaacagaa caaccagtgg cagctcaccc ccctgggcgg caaaacgctg
      481 aacgtcaccg gttgggacgt gaccgacgct aatgccgccg tgattgaagg cacccaggaa
      541 aatggtctct actggaagta tgacagccgg ggctatctga tccttgccga cgataaaacc
      601 accgttatca gcggcgacgg cgaatcgcat acctccgatc gcggcatgga tatcagcggc
      661 caggatcgca ccggcgtgat tatttccggc aatcgaaccg tcaacacgct caccgggggt
      721 tccagtgtga ccgacggcgc catcggcatg gtgatcactg gcgatggcac caccaacacc
      781 atttcgggcc actcaacggt ggacaacgcc accggcgcgc tgatttccgg caacggaacc
      841 accaccaatt tcgccggtga cattgccgtg agcggcggcg gcaccgccat catcatcgac
      901 ggcgacaacg ccacgattaa gaatactggt acctccacca tcaacggcac aggctccacc
      961 ggcaccgtca ttgacggcaa taacgcccgc gtcaacaatg acggtgatat gaccatcacc
     1021 gatggcggca ccggtgctca catcaccggc gataacgcgg ttatcgataa cgccggggac
     1081 accaccgtca gcggcacggg ctcaacggcg ctgtatatcg acggcgacaa tgcgctcatt
     1141 atcaatgaag gtaatcagac tatttccggc ggcgccattg gtacgcgaat tgacggcgac
     1201 gacgcccgta tcgccaatac cggcgatatc gccgttgatg gcgcaggctc tgcggcggcg
     1261 attattaatg gcgacaatag cagcctgacc caggcgggcg atctgctggt caccgacggc
     1321 gcgatgggca tcatcaccta cggcgccgga aatgaagcca aaaataccgg caacgccacc
     1381 gtgcgtgatg tagactcagt ggggtttgtg gtcgcaggcg aacaaaacac cttcaaaaac
     1441 aaggggaata ttaacatcag ccttaacggc accggcgcgc tggtaagcgg caatgcgtcg
     1501 caagcgacgc tggatggcga tattaatgtc accgcaacag aggacgggga taacgtttat
     1561 cgtggcgcga cgggcctcga catgacgggg aataacaaca cgctgaatat tatcggcagc
     1621 gtcacggtca acggcgacta tgacaaagac agcgtgatgg ccggcagcag cgataccctt
     1681 atggggatgt ctatcagcgg cagcaataat gcggtggacc tgagcggcac gctcaatatt
     1741 aacgtcagcg atatgagtaa cgtggacgaa caatatctga ataccgttgg ccttgatgtg
     1801 gcaggtgatg gcaataccgt ggacttagcc ggcggtatta atatcaacta caccgaagat
     1861 gctgacggcc tcgaatcagc cgttaccagt ataaacatca gcggagacag tagcgtaacg
     1921 ctaagcggtg aatccacgct caatattgcc accgtccccg gcggcgcggt gacgctggcg
     1981 aatgtgagaa atggcggcaa cttaacgtta gatcaaaact caacggttaa tatcaatgaa
     2041 acggttattc tttctaatta ttacatgacg caggccctgt taaccgccag cggcgagggc
     2101 tcctcaatca ataatcaggg cactgtcgtt gacgatggcg ccgtcgcttt attactggcg
     2161 gatagcggcg cacaggcaca aaacagcggc aagattaccg cgtatgccac aacagggacg
     2221 tccagccgta atgcgatagc cgcggctaac ggccagggtt ccaccgttaa taatgaagcg
     2281 gaagggacaa tcaccttagt ttcatcatta actccgtttt caaataccgg cgcgggcaac
     2341 ttcccactaa tctggtacaa aaataccctg tacgccatgc tggcagagga ctacggcgag
     2401 gtgagtaacg acgccggcgc caccatatat ttgcagggcg caggggtata cggcgtatcc
     2461 gccagcaaag gcacggcgct caacgctggt gatatctacc tggacggctt tgtcccgacg
     2521 ctggatgatg aaaataacat caccgacaaa acttactgga cgccaccgaa actttatgtc
     2581 accagcgccg cgatggtcgc aggcaccacc gacagcggtt atggcgatgc caccgccacc
     2641 aacaccggca ccattaacgt caataacgcc gggttcggca tgatggcgct taacggcggt
     2701 accgccatta accagggggt aattaatctg accgctgatg cgggcgttga agggaccgac
     2761 ccgaatcaac tggtaggcat ggcggcgctc aacggcggaa ccgttgtcaa cgataccaca
     2821 ggcaaaatca atatttatgc cgattacggc aagcctttcc tgaccgacgg caatagcctg
     2881 attgttaact acggcaccgt ctgttttggc gacgattgcc aggacagcga cgagtacaat
     2941 ccaacaaaca gtgacgtttc tatcccttac acagacggcg ctacgattgc cgatgccgga
     3001 acaagtacaa cgcttggtaa taaagcgatt gtgacaggag acgttaataa taccggagtg
     3061 gtcagcggcg agtccattac cgtcctggat agcggcacgc tgaccaacaa cgacagcggc
     3121 gttatcaata gcaacaccac ggtatccggc aaccttgtca atgacggcgt cataaacggt
     3181 gcgctgacgc aaaatggcgg cgatatcgtt aataatggca ccattgacag ccgtagcctg
     3241 acgaccaacg gcgtattaac taacgcacgg atggcaccat ggcttccggc gcaaaagtga
     3301 ctggcgctaa cagtgcaatc attaacgacg gtacgttcta tcttggctcc gcgactgacg
     3361 ctaaaaatgc gtccatgctg gaaatcaatg atttcgcgca attctttaat accggtacgt
     3421 taatccttga taacaacaaa aatgccattc acctgaatgc gaataacgga acgctgtaca
     3481 acaccgggac gatggagctt acggcaacct ccaataaggg cgcgattaac tattggggcg
     3541 cgggagcggc atttatcaat gacggtacgg taaatgccac tactgcggtg cttgcttatg
     3601 cggggggcgg cgcaggtaat gccccggata aacacgcttt cttctggaac cagtcaaacg
     3661 gcgtaatcaa ttacgatgcg gataatggcc gcgccgtcga tttctccgcc tataacaatt
     3721 acgtagcggt caacgacggc accatgaata tcagcggtaa taacgcttac ggcatgtatg
     3781 gcggcaaaaa tgcacaactg gtcaataaca atacgatcaa tttaggtaca gaaggcacca
     3841 ccgacacagg catggtcgcg atggcgctgg ataaaaatgc taccgctaat gctgtcattg
     3901 agaacaacgg tacaattaat atttacgcca ataactctta cgcgtttagc gtggcgggtg
     3961 cggggcatgt ggttaataac gggacggtag tcattgccga tggcgtaacg ggttccggta
     4021 ttattaaaca gggtgacagc gttaacgtcg aagggacaaa cggtaataac ggcaacagcg
     4081 acgaggcgca ttatgccgac tatacgttgc cggaaacgcc tgttgaaccc ggcagcaaca
     4141 cgacctccgg cttcgccgcc ggcgacacgt ccggcgcgtc caacaacctg aacggctacg
     4201 tggttggcac gaacgccgac ggcagcgcag gccagcttaa ggtcagcaac gccagcatgg
     4261 aaggcgtggg tatcaatacc ggcttcaccg caggcaccgc cgacaccacc gtcagctttg
     4321 acaacgtggt ggagggcagc aacctcaccg acgcttccgc tatccagtcc accagcgtgg
     4381 tgtggaacgc ccagggcagt caggacagcg acggcaacgt tgacgtcacc atgaccaaaa
     4441 acgcctacgc cgatgtggca accgacggta gcgtgtctga cgtggcgcag gcgctggacg
     4501 ctggctacac caacaacgag ctgtacacca gccttaacgt aggcaccacc gccgaactca
     4561 acagtgcgct gaaacaggta agcggcagcc aggccactac ggtattccgt gaagcccggg
     4621 tgttaagcaa ccgcttcaac atgctggccg acgccgcgcc gcagattaaa gacggcctgg
     4681 cgtttaacgt ggtggcgaaa ggcgacccgc gcgccgagct gggcaacgac acccagtacg
     4741 acatgctggc gctgcgtcag aaactggact taaccgcaaa ccagaacctg acgctggaat
     4801 acggtatcgc ccgtctggac ggcgatggtt cgcaaaaagc gggcgacaac ggcctgaccg
     4861 gcggctacag ccagttcttt ggtctgaagc acagcatggc gtttgatgaa ggtctggcgt
     4921 ggaataacag cctgcgttat gacgtacaca acctcgacag cagccgttct gtcgcctatg
     4981 gcgatgttaa caaaattgcc gattccgatg cgcgtcagca gtacatggag ttccgtagcg
     5041 agggggcgaa aaccttctcc ctgatggacg atgcgctgaa agtgacgccg tatgccgggg
     5101 tgaaattccg tcataccatg gaagatggct acaaagagcg caacgctggc gattttaacc
     5161 tgtcgatgaa ctctggcagc gaaacagcgg tggattccat tgtgggtatg aagctggatt
     5221 acgccgggaa agacggctgg agcgccaccg ctaccctgga aggcggcccg aacctgagct
     5281 acagcaagag ccagcgtaca gcgtcattac agggtgcggc gggtcaatcg ttcggcgtgg
     5341 atgacggtca aaaaggcggc ggcattaatg gcctggcaac catcggcgtg aaatatagca
     5401 gcaatgatac cgcgctacat ctggatgcat accagtggaa ggaagacggt atcagcgata
     5461 aaggctttat gcttaacgtt aag
//
LOCUS       DAJVSD010000270         5464 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.270, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000270 DAJVSD010000000
VERSION     DAJVSD010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5464)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5464)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5464
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.270"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(86..184)
                     /locus_tag="OQP62_003972"
     CDS             complement(86..184)
                     /locus_tag="OQP62_003972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaK family small membrane protein"
                     /protein_id="HCS1723384.1"
                     /translation="MRVGVLFPVVIFITAILFLAWFFIGGYAAPGA"
     gene            380..631
                     /locus_tag="OQP62_003973"
     CDS             380..631
                     /locus_tag="OQP62_003973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing protein"
                     /protein_id="HCS1723385.1"
                     /translation="MKFTWIALPGVLLLSACSSSQPNAPRPPRIGMPNPAAVYCEQQG
                     GTLMPVQTPQGVRSDCKLPNGEIIDEWALWRREHPDTKK"
     gene            700..1011
                     /locus_tag="OQP62_003974"
     CDS             700..1011
                     /locus_tag="OQP62_003974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723386.1"
                     /translation="MFQLKPGALAIVIGAKTPAGRRNIGKSVELFCLCQPGDEFINPV
                     NGHVTLLPKEAPRALWLVTGDVASADGQHGFAWVRAEHLMPLSPDRQPGQAAARQSQL
                     S"
     gene            complement(997..1344)
                     /locus_tag="OQP62_003975"
     CDS             complement(997..1344)
                     /locus_tag="OQP62_003975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HCS1723387.1"
                     /translation="MRIQCKRVYFPAEKDDGYRVLVDRLWPRGIKKAALVYDEWNKAI
                     TPSTELRKAFHSELIDFNHFAQQYRAELAQQHQEGKRLADIARHQPLTLLYAAKDTRQ
                     NHAIVLAEWLREL"
     gene            complement(1463..2647)
                     /locus_tag="OQP62_003976"
     CDS             complement(1463..2647)
                     /locus_tag="OQP62_003976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HCS1723388.1"
                     /translation="MTTALSPRGKQGALLIAGILMIATTLRVTFTGAAPLLETIRTDY
                     GLSTAQTGLLTTLPLLAFALISPLAAGIARRFGMERSLFAAMLLICAGIALRSLPSAA
                     LLFAGTAIIGCGIALGNVLLPGLIKRDFSQHVARLTGAYSLTMGAAAALGSALVVPLA
                     LHGFGWRSALLMLMLFPLLAFLIWLPQWRTTRSANLSSSRALHERGIWRSPLAWQVTL
                     FLGLNSLIYYVIIGWLPTILISHGYSEAQAGSLHGLLQLATAAPGLAIPLILHRFNVQ
                     RWIAALVSLLCALGAAGLWFVLGQAIIWTLLFGFGSGATMILGLTFIGLRASSAHQAA
                     ALSGMAQSVGYLLAACGPPVMGKLHDASGSWYLPLSGVTVLAIIMAIFGLYAGRDREI
                     AS"
     gene            2748..3542
                     /locus_tag="OQP62_003977"
     CDS             2748..3542
                     /locus_tag="OQP62_003977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1723389.1"
                     /translation="MIGLRLDGYDPDLHHDAAVAFCIRARDDELFSPRHQHRKGQLIL
                     ALHGAITCEVENAMWMVPPQYAVWLPGSLPHSNHVTAGAELCFLFIEPAAVVMPERCC
                     TLKISPLCRELILSLARRTDSERAQMPTQRLIQVLFDELPQQPQEQLQLPVSGHPKIR
                     QMVETMAQEHARWNTLGQWASVFAMSERNLARLVVKETGLSFRRWRHQLQLILALQAL
                     IAGRNVQQTAQMLGYDSTTAFITMFKKGLGQTPGQYLTGELLLSHN"
     gene            complement(3522..3968)
                     /locus_tag="OQP62_003978"
     CDS             complement(3522..3968)
                     /locus_tag="OQP62_003978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460246.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HCS1723390.1"
                     /translation="MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLNTFFP
                     WIEKQGLTVGIIILTIGVMAPIASGTLPPSTLIHSFVNWKSLVAIAVGVFVSWLGGRG
                     ITLMGNQPQLVAGLLVGTVLGVALFRGVPVGPLIAAGLVSLIVGKQ"
     gene            4174..4275
                     /locus_tag="OQP62_003979"
     CDS             4174..4275
                     /locus_tag="OQP62_003979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000272239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723391.1"
                     /translation="MYDPPFLEALMITASFFAIFIIIVVSVLLLEGD"
     gene            complement(4272..4790)
                     /locus_tag="OQP62_003980"
     CDS             complement(4272..4790)
                     /locus_tag="OQP62_003980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/prolyl-tRNA synthetase associated
                     domain-containing protein"
                     /protein_id="HCS1723392.1"
                     /translation="MAEVAKGVATHQRLVALLTQENARYRVVSHEAVGKCEAVSEIRG
                     TALGQGAKALVCKVKGNGVNQHVLAILAADQQADLSQLASHLGGLRASLASPAEVDML
                     TGCVFGAIPPFSFHPNLKLVADPLLFERFDEIAFNAGLLEKSVIMNTQDYLRIARPEL
                     AVFRRFQSSPTA"
     gene            complement(4840..>5464)
                     /locus_tag="OQP62_003981"
     CDS             complement(4840..>5464)
                     /locus_tag="OQP62_003981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HCS1723393.1"
                     /translation="HDIPGGLRVSLSLDLTYFLVSSWKALAFYLLATALLLNMVRMHF
                     RLYRNVTRENISDAMTGLYNRKILTPVLEQRLQRLVNTGTPVTFVAIDCDRLKLINDT
                     LGHQEGDRIITLLAKAIKTSIRKSDYAIRLGGDEFCIILVDYAADLAIHLPERIIRNL
                     QIIAPDKTVHFSAGIYNMQPNDTINDAYQASDAQLYLNKQQKQHRSS"
BASE COUNT         1367 a         1428 c         1467 g         1202 t
ORIGIN      
        1 aaatgaattt accaccagcc cagttcggta cccgccaccg caattagcgc gatgcccatc
       61 aacaccatcg ttgttttcct catggttatg ctcccggtgc ggcgtaaccg ccaataaaaa
      121 accatgccaa aaataatatt gccgtaatga aaatgacgac agggaagagg acacccactc
      181 tcatgctatt accttcactg ttcagggggc gccagaatag cagggttttc tcagcgacaa
      241 aaggttggtt gctttgtgac agggcgtggc tattgctgac ttaacccggg ataaacaccc
      301 actaaagcgc tgacagaaag tatggaaata gcgtacccgc caggttatcc tggacaaaat
      361 atcgctttaa ggagtcgtta tgaaatttac gtggattgcg ttgccaggcg tattgctgct
      421 gagcgcttgt tcatcgtcgc aacccaacgc ccccaggccg ccgcgtattg ggatgcctaa
      481 tccggcagcc gtctactgtg agcaacaggg cggtacgctg atgccggtgc agaccccaca
      541 aggcgtgcgt tccgattgca aattgcccaa tggcgaaatc attgatgagt gggcattatg
      601 gcgcagagag caccctgata cgaaaaagtg acaacctgcg gtccgacggg atatgattaa
      661 gaacaatctg ataatgagtt tcatgcggcg caagaaaata tgtttcagtt aaagccgggc
      721 gcgttggcaa tagttattgg cgctaagaca cccgccggac ggcggaatat tggtaaatcg
      781 gttgagctat tttgcctgtg ccaacccgga gatgaattca ttaatccggt aaatggacac
      841 gtcaccttac tgccgaaaga agcgcctcgg gcgctgtggc tggttacggg cgacgtagcc
      901 tccgccgatg gtcagcacgg ttttgcctgg gtgcgagcag aacatttgat gccgttgtcc
      961 ccggacagac aaccaggcca ggcggcggca cgacaatcac agctctcgta gccactctgc
     1021 cagcacaatg gcatggttct ggcgagtatc tttagcggcg tatagcaacg ttagcggttg
     1081 gtgtcgggca atatccgcca gacgtttgcc ttcttgatgc tgttgcgcaa gttctgcccg
     1141 gtattgctgc gcgaagtggt taaaatcaat cagttcgcta tgaaaggctt tgcgcaattc
     1201 ggtggagggc gtaatggcct tattccattc atcatagacc agcgctgctt ttttaatgcc
     1261 tcgcggccat agcctgtcaa ccaatacccg ataaccatcg tctttttccg ccgggaaata
     1321 gacgcgctta cactggattc gcatttttcc ctcctgtgat ggtgtcgctt acggtacttt
     1381 tgtcggatag cagtaatgat tttaatggat caggcctgat aaacgaagcg tcatcaggca
     1441 ttcaagtggg tatcaggttt atttatgacg ctatctctcg atcgcgtccg gcgtagaggc
     1501 cgaaaatcgc catgatgata gccagaaccg ttacgcccga tagcggcaga taccagctac
     1561 cgctggcatc atgaagtttt cccatgacgg gcggcccaca tgccgccagt aaatacccga
     1621 ccgactgcgc catgccggaa agcgccgccg cctgatgcgc cgaactggcg cgcaggccga
     1681 taaacgtcag gccgaggatc atcgtcgcgc ctgaaccgaa gccgaacagt agcgtccaga
     1741 tgatcgcctg gcccagcaca aaccaaagcc ccgccgcgcc cagtgcgcac aatagtgaga
     1801 ccagcgcggc aatccagcgt tgaacgttaa agcgatgcaa aataagcgga atagctaacc
     1861 caggcgccgc ggtcgccagt tgcagcaggc catgtagcga tcctgcctgt gcttcgctgt
     1921 aaccgtggct gatgagtatt gttggtaacc agccgataat cacataataa atcagtgagt
     1981 taagcccaag aaacagagta acttgccagg ctaaaggcga acgccagata ccgcgttcat
     2041 gtaatgcccg ggagctactc aggttagctg agcgggtagt gcgccactgc ggcaaccaga
     2101 taagaaacgc caacagcgga aacagcatca gcattaacag cgcgctgcgc cagccaaaac
     2161 cgtgcaacgc cagcggaacc accagcgcag accccaacgc ggcggcggcg cccatcgtca
     2221 atgagtacgc gcccgtcagc ctggcgacat gttgtgaaaa atcgcgctta atcaatcctg
     2281 gtagcagcac attacccagc gctatcccgc acccaataat ggcagttccg gcaaacaaca
     2341 atgcagcgga gggcagggag cggagagcaa tacccgcgca aatcagcagc attgcggcaa
     2401 acagactgcg ttccatccca aaccggcggg caataccggc cgccagcggc gaaatcagtg
     2461 caaacgccag aagcggcaag gttgttagca ggcccgtctg ggcggtggaa agaccgtaat
     2521 ccgtacggat tgtctccagc aacggcgcag cgccggtaaa tgttacgcgt agcgtagtgg
     2581 ctatcatcaa aataccggca atcagtaaag cgccctgttt gccgcgtggt gaaagggctg
     2641 tcgtcatcgt tttctcatct cgtcaggcga ggcgatacct taacagtttt tactgtttgg
     2701 atgaatcaag ctaaaatgac aatttatcgc taaaatcgga caatataatg attggcctga
     2761 gactggacgg ttacgatccc gaccttcacc acgatgccgc tgtggccttt tgtattcgcg
     2821 ccagggatga tgaactgttt agccctcgcc atcagcatcg caagggacag ttgatcctcg
     2881 ctctgcacgg cgcgatcacc tgtgaggtgg aaaatgcgat gtggatggtt ccgccccagt
     2941 atgccgtctg gctccccggc tcgctgccgc acagtaatca tgtgaccgca ggggcggagc
     3001 tgtgcttttt atttattgaa cctgcggcgg tcgtcatgcc ggagcgttgc tgcacgctga
     3061 aaatttcgcc gttatgccgg gagttgattt tgtcgctggc gcgcagaacc gattccgaaa
     3121 gagcgcaaat gccaacgcag cgccttattc aggtgttgtt tgatgaactg ccgcagcagc
     3181 cgcaggaaca attgcaatta ccagtatcgg ggcatccgaa aattcgccaa atggttgaga
     3241 caatggcgca ggagcacgcg cgatggaata cgttagggca gtgggccagc gtattcgcga
     3301 tgagcgagcg taaccttgcc cggctggtcg tcaaagagac gggactcagc tttcgtcgct
     3361 ggcgtcatca attacaatta attctggcgc tacaagcgct gatcgcggga cgtaatgtac
     3421 aacagacggc gcaaatgctg ggttatgatt ctaccacggc attcattacg atgtttaaaa
     3481 aaggcctggg gcagacccca ggccagtatc tgacgggcga gttactgctt tcccacaatt
     3541 aaagagacca gccccgccgc aatcagtggg ccgaccggca cgccgcgaaa cagcgcgacg
     3601 ccaagtaccg taccgaccag cagcccggcg acgagctgcg gttggtttcc catcagcgta
     3661 atgccgcgac cacccagcca ggagacgaaa acgccgacgg caatcgcgac cagcgatttc
     3721 cagttcacaa aagagtggat caatgtggag ggcggtaggg ttccgctggc gatgggggcc
     3781 atcacgccga tggtcagaat gataatcccg acggtgagcc cctgtttttc aatccaggga
     3841 aaaaaggtat tcaacggggt tacgcggaca ataatcagca ccagaattga gacggcgaca
     3901 gtggtgttgt ggctaataaa tcccagagct gccagtccga gcaggatcag cagagtgaca
     3961 tcaaacatta tggtttcctt gccaaaaagt aagcctgact actttacgcc caaacggcaa
     4021 agcgcacagg cctttttaac gattgatgcg gatttcaggc aactgcctga aagacaattt
     4081 ctacgtgaaa aacggcgttg tcattaaatt gacatcaacg ccgcgtattg ctaaccggtg
     4141 aaccgtcatt gttgtcttcc tgaggataca attatgtacg atccaccgtt tcttgaagcg
     4201 ctgatgataa cagcgtcgtt tttcgccatt tttatcatta ttgttgtgtc tgtattgctc
     4261 cttgaagggg actaagccgt tggcgatgac tgaaagcggc ggaagactgc cagttctggt
     4321 cgggcgatgc gcagatagtc ctgtgtattc ataatgactg atttttccag cagaccggca
     4381 ttaaaggcaa tttcatcgaa acgctcaaac aggagcggat cggcgaccag tttcagattg
     4441 gggtgaaaac tgaaaggcgg gatcgcgcca aaaacgcagc cggtcaacat atcgacttcc
     4501 gccgggctgg caagggaagc gcgtaagccg cccagatgtg aagcaagctg agagaggtcg
     4561 gcttgctgat cggccgccag aatagcaaga acgtgctggt tgacgccgtt gcctttgact
     4621 ttacagacca gcgcttttgc gccctggccc agcgcagtac cgcgtatttc agataccgct
     4681 tcgcattttc ctactgcttc atggctcacc acacgatagc gcgcgttctc ctgggttaat
     4741 aaagccacta aacgttggtg tgtagcgaca cccttcgcga cttcagccat ttcggccatt
     4801 tcttcctcct ggtacaatat gaacatttac tgcgaagcac tatgatgaac gatgttgttt
     4861 ttgttgtttg ttcagataga gctgcgcatc ggaagcctgg taggcatcat taatcgtatc
     4921 attgggctgc atattataaa tcccggcgga aaaatggact gtcttatccg gtgcgataat
     4981 ctgcaggtta cgaataatac gctccggcag atggatagcc aaatccgccg cgtaatcaac
     5041 aagaataata cagaattcat cgccgccgag gcgaatggcg taatcgcttt tacgaatcga
     5101 tgttttaatc gctttcgcca acagggttat aattcggtcg ccttcctggt gccccagggt
     5161 atcgttgatc agttttaacc tgtcgcaatc aatagcgaca aatgtcaccg gcgtcccggt
     5221 attgaccagg cgttgcagtc gctgttccag caccggtgtt aatattttac ggttgtaaag
     5281 cccggtcatg gcatcgctaa tattttcgcg tgtgacgttg cgataaagcc gaaagtgcat
     5341 ccgtaccata ttaagcagga gcgctgttgc cagtaagtaa aaggccagcg ctttccagga
     5401 cgagacaagg aaataggtta aatcaagcga caacgaaacg cgcagtccac cagggatatc
     5461 atgg
//
LOCUS       DAJVSD010000271         5436 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.271, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000271 DAJVSD010000000
VERSION     DAJVSD010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5436)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5436)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5436
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.271"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..161)
                     /locus_tag="OQP62_003982"
     CDS             complement(<1..161)
                     /locus_tag="OQP62_003982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_447236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723394.1"
                     /translation="MATDYIILLKKEVMEARAFISQALQILNDLSEIMTTMASCLKLR
                     ISLSVTLGYV"
     gene            complement(470..2491)
                     /gene="uvrB"
                     /locus_tag="OQP62_003983"
     CDS             complement(470..2491)
                     /gene="uvrB"
                     /locus_tag="OQP62_003983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HCS1723395.1"
                     /translation="MSKPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSG
                     KTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYV
                     PSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLH
                     LTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD
                     EEVERLSLFDPLTGQVESTVPRYTIYPKTHYVTPRERILQAMEEIKDELADRRKVLLA
                     NNKLLEEQRLSQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL
                     LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV
                     SATPGNYELEKSGDEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL
                     VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE
                     GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG
                     ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGKGKGRSTAKAGIVE
                     LDMTPKALQQKIHELEEQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS"
     gene            complement(3142..3828)
                     /gene="bioD"
                     /locus_tag="OQP62_003984"
     CDS             complement(3142..3828)
                     /gene="bioD"
                     /locus_tag="OQP62_003984"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HCS1723396.1"
                     /translation="MTKRYFVTGTDTEVGKTVASCALLQAATQLGYQTVGYKPVASGS
                     EMTTDGLRNSDALALQRNSSLPQPYSAINPYTFAEPTSPHIASADEGRAIDAAVLSRG
                     LRTLEAQADWVLTEGAGGWFTPLSATLTFADWVQTEQLPVILVVGVKLGCINHAMLTA
                     LAVEQAGLPLVGWIANDMQPPGARHGEYLATLRRVIPAPLLGEIPWLGVSPSQAATGQ
                     YLDLSPLERA"
     gene            complement(3821..4576)
                     /gene="bioC"
                     /locus_tag="OQP62_003985"
     CDS             complement(3821..4576)
                     /gene="bioC"
                     /locus_tag="OQP62_003985"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HCS1723397.1"
                     /translation="MAQVNKQAIAAAFGRAASQYEQHASLQQHSADALLTLLTGRQFA
                     SVLDAGCGPGRMSRYWRERGSEVTALDLSLPMLQQARDRQAAHHYLLADIEAIPHDAE
                     VFDLAWSNLAVQWCGDLRDALSELYRVVRPGGVVAFTTLCQGSLPELRQAWQAVDNRA
                     HANSFLPEEAIDHALRGWRASRHTQAMTLWFEDALSAMRSLKGIGATHLHEGRETDVL
                     TRARLRQIQLAWPQRQGKYLLTYHLFMGVIERD"
     gene            complement(4560..>5436)
                     /locus_tag="OQP62_003986"
     CDS             complement(4560..>5436)
                     /locus_tag="OQP62_003986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HCS1723398.1"
                     /translation="QWLGYPRALLFISGFAANQAVITALMKKNDRIVADRLSHASLLE
                     AANLSPAQLRRFIHNDTQHLSRLLQSPCVGQQLVVTEGVYSMDGDSAPLAEIQHIARR
                     HHAWLLVDDAHGIGVTGDEGRGTCWQRGVKPELLVVTFGKGFGVSGAAVLCSESVADY
                     LLQFARHLVYSTSMPPAQAQALSASLAVIRSDEGRERREKLAALVQRFRAGVNASRFT
                     LLNAHSAIQPLIVGDNSRALRLAEALRQQGCWATAIRPPTVPVGTARLRLTLTQAHEA
                     CDIDRLLEVLHGAGE"
BASE COUNT         1225 a         1604 c         1379 g         1228 t
ORIGIN      
        1 acgtaaccta aagtaacaga taaggatatt ctcaacttta aacaagaggc catagtcgtc
       61 attatttcgg acaaatcatt cagtatttgc agcgcttgac ttataaatgc tcgcgcttcc
      121 atcacctctt ttttaagtag aatgatgtaa tctgttgcca tgacacgctt tcaacgaact
      181 cacataagat taaaatgacg atcatgagga tagctatacc gataatacgg ggcgtttttt
      241 ttcatagccg aggagagagg gaaaattagc gttgggttca gcctcaacgc taattttctt
      301 cagttgtgat taaactagct accccattga tgttttgact ttttcgacaa tctcgttagt
      361 caaagcctgt cactgttttt cattcctgac tgacttagcc ctgactattg cactgaaatt
      421 ctcaaaagcg agccatggta acgatgactc gctggcgatc gacacattgt caggacgccg
      481 cgataaacaa ctcgcgtaac tggtgcaact ggtcgcgaat ttgcgcggct tcttcaaact
      541 ccagattttg cgcgtgctgc atcatttgct cttccagttc atgaattttc tgctgcaacg
      601 ctttcggcgt catatccagt tcgacaattc cggcttttgc cgtagaacgg cccttgcctt
      661 tccccttcgc tttggttttc gcaatgttct gccccagcgc caggatgtcg accacttttt
      721 tgttcagccc ctgcggagtg ataccgtgct cttcgttgta cttctgctgc ttctcgcgac
      781 gtcgctcggt ttcgccaatc gccttcgcca tcgacggcgt gattttatcg ccatacagaa
      841 tcgctttacc gttaacgtta cgcgccgcgc gccctatggt ctgaatcagg gagcgctcgg
      901 agcgcaggaa gccctctttg tcggcgtcca gaatcgccac cagcgagact tccggcatat
      961 ccagcccttc gcgcagcagg ttaatcccca ccagaacgtc aaactcgccc agacgcaaat
     1021 cgcggatgat ttccatgcgc tccacggtat caatatctga gtgcaggtaa cgcacgcgct
     1081 cgccgtgctc ttccagatat tcggtcaaat cttccgccat ccgtttggtg agcgtagtga
     1141 caaggacacg ctcattaatg gccgcacgct gacgaatttc ggacagcaga tcgtccacct
     1201 gggtcgccac cggacgcact tcaataatcg ggtccagcag cccggtcggt cgcacgacct
     1261 gatccaccac ctcatcacca gatttttcca gctcatagtt gccgggcgtg gcggaaacat
     1321 agatagtttg cggcgctaag gcttcaaact cctcaaactt cagcggacgg ttatccagcg
     1381 ccgaaggcag acggaagcca tactcgacca gcgtctcttt gcgcgcccgg tcgccgcggt
     1441 acatgccgcc tatctgcggg atggtgacat gagactcatc caccaccagc agtccgtcgg
     1501 cgggcagata atcgaacaag gttggcggcg gttcgcccgg cccgcggccc gacagaaagc
     1561 gggaatagtt ttcaatgcct gagcagtagc ccagctcgtt catcatctct aaatcgaact
     1621 gcgtgcgctg gcttaatcgc tgctcttcaa gcagcttatt atttgccagc aagaccttac
     1681 gcctgtccgc cagctcatct tttatctctt ccatcgcctg cagaatacgc tcgcgcggcg
     1741 tcacgtagtg cgttttggga tagatagtat aacgtggcac cgttgactct acctgcccgg
     1801 ttaacgggtc gaacagcgac aggcgttcca cttcttcatc aaacagctca acgcgtagcg
     1861 caatgtcgtc agattcagcc gggaagatgt cgatcacttc gccgcgcacg cgaaaggtac
     1921 cacgctgaaa agcttgatcg ttacgggtgt attgcaattc cgccagccga cgcaaaatcg
     1981 cgcgctggtc aatcagcatt cccaccgtca gatgcagcat cattttcagg tagagatccg
     2041 gatcgcccag accgtaaatc gcggacacgg aagccaccac cacgacatcg cgtcgctcaa
     2101 gcaacgcttt cgttgccgac aaccgcattt gctcaatatg ttcgtttacc gaagcgtctt
     2161 tttcgataaa cgtatccgaa cttggcacat acgcttccgg ctgatagtag tcatagtagg
     2221 agacgaaata ctccaccgcg ttttccggga aaaactcttt catttcgccg tagagctgcg
     2281 ccgccagggt tttattgggc gcaagcacca tcgttggccg ctgcaagtcc gcaatgacgt
     2341 tggcgatggt gaatgtcttc ccggagccgg tcacgcccaa taacgtctga tgcgccagcc
     2401 cgtcctccag cccctcttcc agacgacgta tagcgtccgg ctgatcgcca gaaggtttaa
     2461 aagcggaatt cagtttgaac ggtttactca tgagcggcta cctgaaggag tgagcgggca
     2521 gggatgtaat tttactctcg acggtgaata ttgccaataa aaaatactgg atgaaaaaac
     2581 agtaacactc cagtgtataa tggctatcgg cagatacccc acgctattta gaggtaaaac
     2641 atagacagtc gcggggtaaa attccagcag tgtgctggtt atccccagac cagagtcttt
     2701 tttaacattt gtcaagtcgg atgatgaaag ttttatgtca acgtatcccc cttcctttac
     2761 aaccattgat tttatataac ttgctgtcta aaaagggata ttttctcaag ccgtctttcg
     2821 cgccaattta gtcgcaggcc gcgtcgcctc tcgcttacgt tgtgttttct aactctaata
     2881 cacaaggtta tccacaggaa tagtggataa ctgcttccag cccgtatccc ctgccgcctg
     2941 gcaaaatcag cccctgacgt tttcgccggg cgataaaaaa aaattatcgc tatttttggc
     3001 agattattgg ctaacgagaa ggcaaaaatt gaggcgtaga cgctcacatt ttgcacattt
     3061 ttagcatggc gacgtcagga gggtctggcg aaagaacagc aggatcgtct gatcctgcaa
     3121 gaaggcggtt tttaagcgcg gtcaggcgcg ttccaagggg ctaaggtcca gatactgtcc
     3181 tgtcgccgcc tgcgatggag aaacgcccag ccacgggatt tcccctaaca gcggggccgg
     3241 tatgacgcgg cgaagcgtcg cgagatattc accatgacgc gcgcctggcg gctgcatgtc
     3301 gttggctatc catccgacaa gcggtaatcc ggcctgttct accgccagcg ccgtcagcat
     3361 ggcgtgatta atacagccca gcttgacgcc aacaaccaga atcaccggca gctgctccgt
     3421 ctgtacccag tcggcaaacg tcagcgtggc agagagcggt gtaaaccagc cgcccgcccc
     3481 ttctgtcaac acccagtctg cctgcgcctc cagcgttcgt aatccgcgtg ataacaccgc
     3541 cgcgtctatc gcccggcctt cgtcggcgct agcgatgtgg ggagaagtag gctcggcaaa
     3601 agtataagga ttgatagcgg aataaggttg cggcaggctg ctgttacgct gcaaggccag
     3661 ggcatcgcta ttgcgtagcc cgtcggttgt catttcgctg ccggaagcga cgggcttata
     3721 gcctacggtt tgataaccta actgcgttgc ggcctgcaat aaggcgcaac tggcgaccgt
     3781 tttaccgact tcagtatcag taccggtcac aaaatagcgt ttagtcacgt tcaatcactc
     3841 ccataaaaag gtggtacgtc agcagatatt tcccctgccg ctgcggccat gccagttgaa
     3901 tctgtctaag ccgggcgcgg gttaatacat ccgtctcccg cccttcatga agatgggtgg
     3961 cgccaatgcc tttgagcgaa cgcatcgcgc tcagggcatc ctcaaaccac aatgtcatcg
     4021 cctgagtatg acgagacgcc cgccagccgc gtagcgcgtg gtcaatggcc tcttccggca
     4081 aaaagctatt cgcgtgagcg cgattatcga cggcctgcca tgcctgacgc agctccggca
     4141 acgacccctg gcacaaggtg gtaaacgcca ccacgccgcc gggccgtaca acccgataca
     4201 actcgctcaa cgcatcgcgt aaatcgccgc accactggac cgccaggttg ctccaggcca
     4261 ggtcaaaaac ttcggcgtca tggggaatcg cttcgatatc cgccagcaaa tagtgatgcg
     4321 ccgcctgacg atcgcgagcc tgttgcagca tcggcagcga aagatccagg gcggtcactt
     4381 cgctcccccg ctctcgccag taacgactca tacgtccggg gccgcagcct gcgtccaaca
     4441 cactggcaaa ctggcggcct gtcaacagcg tcagcagcgc atccgcgctg tgttgctgta
     4501 aagaggcgtg ctgttcgtat tgcgatgcgg cccggccaaa cgccgccgca atagcctgct
     4561 tattcacctg cgccatgcag cacctccagc agacggtcta tatcgcacgc ttcatgcgcc
     4621 tgcgttaacg ttaagcgcag gcgcgccgta ccgacaggca ccgtcggcgg acgaatcgcc
     4681 gtcgcccagc atccttgttg acgcagcgcc tccgccaggc gcaatgcacg gctgttatcg
     4741 cccacgatta acggctggat ggcgctatgg gcattcagta gcgtaaatcg ggacgcgtta
     4801 acgccggccc gaaagcgctg aaccagagcg gcgagttttt cgcgccgttc acgaccttca
     4861 tcgctacgga tcaccgccag cgaggcgctt aacgcctgcg cctgggcggg cggcatactg
     4921 gtgctgtaaa ccagatgacg ggcgaattgc agcagataat ctgcgacgct ttccgagcag
     4981 agcaccgctg cgccgctgac gccaaacccc ttaccgaaag tcaccaccag caactcaggc
     5041 ttcacccccc gctgccagca ggtgccccgc ccctcatcgc cagtcacgcc gatgccgtgc
     5101 gcatcatcaa ccaacagcca ggcatgatgc ctgcgggcaa tgtgctggat ttccgccagc
     5161 ggcgcgctgt cgccgtccat gctgtataca ccttctgtca ccaccagttg ctgacccacg
     5221 cagggcgatt gcagtaaacg cgacagatgc tgcgtatcgt tatggataaa gcggcgaagc
     5281 tgcgccggac tcagattagc ggcttccagc agggaagcat gactcaacct gtcggccaca
     5341 atccggtcat tttttttcat taaggcggta atgaccgcct gattcgccgc aaagccagag
     5401 ataaacagca gcgcgcgtgg atatcctaac cattgc
//
LOCUS       DAJVSD010000272         5428 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.272, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000272 DAJVSD010000000
VERSION     DAJVSD010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5428
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.272"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..1304
                     /gene="spiA"
                     /locus_tag="OQP62_003987"
     CDS             <1..1304
                     /gene="spiA"
                     /locus_tag="OQP62_003987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SPI-2 type III secretion system protein SpiA"
                     /protein_id="HCS1723399.1"
                     /translation="SGKIPPGPPVDILNNLAAQYDLLTWFDGSMLYVYPASLLKHQVI
                     TFNILSTGRFIHYLRSQNILSSPGCEVKEITGTRAVEVSGVPSCLTRISQLASVLDNA
                     LIKRKDSAVSVSIYTLKYATAMDTQYQYRDQSVVVPGVVSVLREMSKTSVPASSTTNG
                     SPATQALPMFAADPRQNAVIVRDYAANMAGYRKLITELDQRQQMIEISVKIIDVNAGD
                     INQLGIDWGTAVSLGGKKIAFNTGLNDGGASGFSTVISDTSNFMVRLNALEKSSQAYV
                     LSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITTGSLLRVTPRLLNDNGTQKI
                     MLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKI
                     PLLGDIPVVGHLFRNDTTQVHSVIRLFLIKASVVNNGISHG"
     gene            1285..2496
                     /gene="ssaD"
                     /locus_tag="OQP62_003988"
     CDS             1285..2496
                     /gene="ssaD"
                     /locus_tag="OQP62_003988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SctD family type III secretion system inner
                     membrane ring subunit SsaD"
                     /protein_id="HCS1723400.1"
                     /translation="MAYLMVNPKSSWKIRFLGHVLQGREVWLNEGNLSLGEKGCDICI
                     PLAINEKIILREQADSLFVDAGKARVRVNGRRFNPNKPLPSSGVLQVAGVAIAFGKQD
                     CELADYQIPVSRSGYWWLAGVFLIFIGGMGVLLSISGQPETVNDLPLRVKFLLDKSNI
                     HYVRAQWKEDGSLQLSGYCSSSEQMQKVRATLESWGVMYRDGVICDDLLIREVQDVLI
                     KMGYPHAEVSSEGPGSVLIHDDIQMDQQWRKVQPLLADIPGLLHWQISHSHQSQGDDI
                     ISAIIENGLVGLVNVTPMRRSFVISGVLDESHQRILQETLAALKKKDPALSLIYQDIA
                     PSHDESKYLPAPVAGFVQSRHGNYLLLTNKERLRVGALLPNGGEIVHLSADVVTIKHN
                     DTLINYPLDFK"
     gene            2504..2746
                     /gene="ssaE"
                     /locus_tag="OQP62_003989"
     CDS             2504..2746
                     /gene="ssaE"
                     /locus_tag="OQP62_003989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YscE family type III secretion system
                     co-chaperone SsaE"
                     /protein_id="HCS1723401.1"
                     /translation="MTTLTRLEDLLLHSREEAKGIILQLRAARKQLEENNGRLQDPQQ
                     YQQNTLLLEAIEQAENIINIIYYRYHNSALVVSEQE"
     gene            2949..3275
                     /gene="sseA"
                     /locus_tag="OQP62_003990"
     CDS             2949..3275
                     /gene="sseA"
                     /locus_tag="OQP62_003990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-2 type III secretion system chaperone SseA"
                     /protein_id="HCS1723402.1"
                     /translation="MMIKKKAAFSEYRDLEQSYMQLNHCLKKFHQIRAKVSQQLAERA
                     ESPKKSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRLKQLNAQAPVEIP
                     SGKTKR"
     gene            3282..3872
                     /gene="sseB"
                     /locus_tag="OQP62_003991"
     CDS             3282..3872
                     /gene="sseB"
                     /locus_tag="OQP62_003991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-2 type III secretion system translocon
                     protein SseB"
                     /protein_id="HCS1723403.1"
                     /translation="MSSGNILWGSQNPIVFKNSFGVSNADTGSQDDLSQQNPFAEGYG
                     VLLILLMVIQAIANNKFIEVQKNAERARNTQEKSNEMDEVIAKAAKGDAKTKEEVPED
                     VIKYMRDNGILIDGMTIDDYMAKYGDHGKLDKGGLQAIKAALDNDANRNTDLMSQGQI
                     TIQKMSQELNAVLTQLTGLISKWGEISSMIAQKTYS"
     gene            3869..4342
                     /gene="sscA"
                     /locus_tag="OQP62_003992"
     CDS             3869..4342
                     /gene="sscA"
                     /locus_tag="OQP62_003992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SycD/LcrH family type III secretion system
                     chaperone SscA"
                     /protein_id="HCS1723404.1"
                     /translation="MKKDPTLQQAHDTMRFFRRGGSLRMLLDDDVTQPLNTVYRYAMQ
                     LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA
                     PQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRLRAEKMLQQLSDRS"
     gene            4345..>5428
                     /gene="sseC"
                     /locus_tag="OQP62_003993"
     CDS             4345..>5428
                     /gene="sseC"
                     /locus_tag="OQP62_003993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-2 type III secretion system translocon
                     protein SseC"
                     /protein_id="HCS1723405.1"
                     /translation="MNRIHSNSDSAAGVTALTHHHLSNVSCVSSGSLGKRQHRVNSTF
                     GDGNAACLLSGKISLQEASNALKQLLDAVPGNHKRPSLPDFLQTNPAVLSMMMTSLIL
                     NVFGNNAQSLCQQLERATEVQNALRNKQVKEYQEQIQKAIEQEDKARKAGIFGAIFDW
                     ITGIFETVIGALKVVEGFLSGNPAEMASGVAYMAAGCAGMVKAGAETAMMCGADHDTC
                     QAIIDVTSKIQFGCEAVALALDVFQIGRAFMATRGLSGAAAKVLDSGFGEEMVERMVG
                     AGEAEIEALAEKFGEEVSESFSKQFEPLEREMVSPGEMEEESAEFSRNVEKNMTKNAG
                     KSFTKEGVKAMAKEAVKEALEKYAQEG"
BASE COUNT         1591 a         1032 c         1399 g         1406 t
ORIGIN      
        1 ttagtggaaa aattccgcct ggaccaccgg tcgatatttt gaataacctg gcagcacaat
       61 atgatttgct aacctggttt gatggcagca tgttatatgt atatcctgca tcgttattaa
      121 aacatcaggt tatcactttc aatattttat ctactggacg gttcattcat tacttacgca
      181 gccagaatat cctttcatca ccgggatgcg aggttaaaga aattaccggt accagagctg
      241 tggaggtgag tggtgttccc agctgtctga ctcgtattag tcaattagct tcagtgctgg
      301 ataatgcgtt aatcaaacga aaagacagtg cggtgagtgt aagtatatac acgcttaagt
      361 atgccactgc gatggatacc caataccaat atcgcgatca gtccgtcgtg gttccagggg
      421 tcgtgagtgt attgcgtgag atgagtaaaa ccagcgtacc ggcgtcatcg acgaccaatg
      481 gttcacccgc tacacaggca ttgcccatgt ttgctgccga cccacgccag aatgcagtga
      541 tcgttcgtga ttatgcggcc aatatggccg ggtatcggaa actcatcaca gaattagatc
      601 aacgccagca gatgatagag atttcggtga aaattatcga tgttaatgct ggagatatta
      661 accagttagg catcgactgg ggaacggcag tgtcgctggg tggcaagaaa attgcgttca
      721 atacaggttt gaatgacggt ggtgctagcg gtttttcaac ggtaatcagc gatacctcaa
      781 actttatggt gcgtttgaat gccctggaaa aaagctctca ggcttatgta ctttcccagc
      841 catctgtggt gactttaaat aatatccagg ctgtgctgga taaaaatatt actttctata
      901 ccaaactgca gggagaaaaa gtggctaaac ttgaatccat cactacgggt tctttgttgc
      961 gcgttacacc tcgcttgtta aatgacaatg gcacgcaaaa aataatgctt aatcttaata
     1021 ttcaggatgg acaacaaagt gatacgcaaa gcgaaacaga tccgctaccc gaagtgcaaa
     1081 attctgaaat tgcttcgcaa gccacattat tggccggaca aagtctattg ctgggagggt
     1141 ttaaacaagg taaacaaatc cactcgcaaa acaaaatccc tttattgggc gatatccctg
     1201 tcgtaggtca tttgtttcgc aatgatacga ctcaagtaca tagtgtaatc aggctttttt
     1261 tgattaaagc ctcagtagta aataatggca tatctcatgg ttaatccaaa gagttcctgg
     1321 aaaatacgtt ttttaggtca cgttttacaa ggccgggaag tatggctgaa tgaaggtaac
     1381 ctgtcactgg gggagaaggg atgcgatatt tgtattccgc tggctataaa tgaaaaaatt
     1441 attctgagag aacaggcaga tagtttattt gttgatgccg ggaaagccag agttagagtt
     1501 aatggccgca gatttaatcc aaataagccg ctaccatcca gtggggtttt gcaggttgcg
     1561 ggagtggcta tcgcgtttgg taaacaggat tgtgaacttg ctgattatca aatacccgtt
     1621 tccagatcag ggtactggtg gttggctggc gtattcttga ttttcatcgg tggaatgggt
     1681 gtcctgttaa gtattagtgg tcagcctgaa acggtaaatg acttaccttt gcgggttaag
     1741 tttttattag acaaaagcaa tattcattat gtgcgggcgc aatggaaaga agatggaagc
     1801 ctgcagttgt ccggttattg ctcgtcaagc gaacagatgc aaaaggtgag agcgactctc
     1861 gaatcatggg gggtcatgta tcgggatggt gtaatctgtg atgacttatt gatacgagaa
     1921 gtgcaggatg ttttgataaa aatgggttac ccgcatgctg aagtatccag cgaagggccg
     1981 gggagcgtgt taattcatga tgatatacaa atggatcagc aatggcgtaa ggttcaacca
     2041 ttacttgcag atattcccgg gttattgcac tggcagatta gtcattctca tcagtctcag
     2101 ggggatgata ttatttctgc gataatagag aacggtttag tggggcttgt caatgttacg
     2161 ccaatgcggc gctcttttgt tatcagtggt gtactggatg aatctcatca acgcattttg
     2221 caagaaacgt tagcagcatt aaagaaaaag gaccccgctc tttctttaat ttatcaggat
     2281 attgcgcctt ctcatgatga aagcaagtat ctgcctgcgc cagtggctgg ctttgtacag
     2341 agtcgccatg gtaattactt attactgacg aataaagagc gtttacgtgt aggggcattg
     2401 ttacccaatg ggggagaaat tgtccatctg agtgccgatg tggtaacgat taaacataat
     2461 gatactttga ttaactatcc attagatttt aagtgagtgg aaaatgacaa ctctgacccg
     2521 gttagaagat ttgctgcttc attcgcgtga agaggccaaa ggcataattt tacaattaag
     2581 ggctgcccgg aaacagttag aagagaacaa cggtaggtta caggatccgc agcaatatca
     2641 gcaaaacacc ttattgcttg aagcgatcga gcaggccgaa aatatcatca acattattta
     2701 ttatcgttac cataacagcg cacttgtagt gagtgagcaa gagtaaagta aaaatatctt
     2761 agagcctatc ccaccaggcg ttaattggcg cagccagttt ggacacggat agcgcgcaaa
     2821 aaccggagcg tacacgtagt acgtgaggat tttgagcact gcccaggttc aaaatggcaa
     2881 gtaaaatagc cctaatggga caggctctta gttagcacgt taattatcta tcgtgtatat
     2941 ggaggggaat gatgataaag aaaaaggctg cgtttagtga atatcgtgat ttagagcaaa
     3001 gttacatgca gctaaatcac tgtcttaaaa aatttcacca aatccgggct aaggtgagtc
     3061 aacagcttgc tgaaagggca gagagcccca aaaagagcag agagacagag agtattcttc
     3121 ataacctatt tccacaaggc gttgccgggg ttaaccagga ggccgagaag gatttaaaga
     3181 aaatagtaag tttgtttaaa caacttgaag tacgactgaa acaacttaat gctcaagccc
     3241 cggtggagat accgtcagga aaaacaaaaa ggtaaagcat aatgtcttca ggaaacatct
     3301 tatggggaag tcaaaaccct attgtgttta aaaatagctt cggcgtcagc aacgctgata
     3361 ccgggagcca ggatgactta tcccagcaaa atccgtttgc cgaagggtat ggtgttttgc
     3421 ttattctcct tatggttatt caggctatcg caaataataa atttattgaa gtccagaaga
     3481 acgctgaacg tgccagaaat acccaggaaa agtcaaatga gatggatgag gtgattgcta
     3541 aagcagccaa aggggatgct aaaaccaaag aggaggtgcc tgaggatgta attaaataca
     3601 tgcgtgataa tggtattctc atcgatggta tgaccattga tgattatatg gctaaatatg
     3661 gcgatcatgg gaagctggat aaaggtggcc tacaggcgat caaagcggct ttggataatg
     3721 acgccaaccg gaataccgat cttatgagtc aagggcagat aacaattcaa aaaatgtctc
     3781 aggagcttaa cgctgtcctt acccaactga cggggcttat cagtaagtgg ggggaaattt
     3841 ccagtatgat agcgcagaaa acgtattcat gaaaaaagac ccgaccctac aacaggcaca
     3901 tgacacgatg cgatttttcc ggcgtggcgg ctcgctgcgt atgttgttgg atgacgatgt
     3961 tacacagccg cttaatactg tgtatcgcta tgccatgcag cttatggagg taaaagaatt
     4021 cgccggcgca gcgcgacttt ttcaattgct gacgatatat gatgcctggt catttgacta
     4081 ctggtttcgg ttaggggaat gctgccaggc tcaaaaacat tggggggaag cgatatacgc
     4141 ttatggacgc gcggcacaaa ttaagattga tgcgccgcag gcgccatggg ccgcagcgga
     4201 atgctatctc gcgtgtgata acgtctgtta tgcaataaaa gcgttaaaag ccgtggtgcg
     4261 tatttgcggc gaggtcagtg aacatcaaat cctccgacta cgtgcagaaa agatgttaca
     4321 gcagctttct gacaggagct aaaaatgaat cgaattcaca gtaatagcga tagcgccgca
     4381 ggagtaaccg ccttaacaca tcatcactta agcaatgtca gttgcgtttc ctcgggttcg
     4441 ctgggaaagc gccagcatcg tgtgaattct acttttggcg atggcaacgc cgcgtgtctg
     4501 ctatccggga aaattagtct tcaggaggca agcaatgcgt tgaagcaact gcttgatgcc
     4561 gtacccggaa atcataagcg tccatcattg cctgactttt tgcagaccaa tcccgcggtt
     4621 ttatcaatga tgatgacgtc attaatactc aacgtctttg gtaataacgc tcaatcgtta
     4681 tgccaacagc ttgagcgggc aactgaggtg caaaatgcat tacgtaataa gcaggtaaag
     4741 gagtatcagg agcagatcca gaaagcgata gagcaggagg ataaagcgcg taaagcgggt
     4801 atttttggcg ctatttttga ctggattacc ggcatatttg aaaccgtgat tggcgcctta
     4861 aaagttgtgg aaggttttct gtccggtaat cccgcagaaa tggctagcgg cgtagcttat
     4921 atggccgcag gttgtgcagg aatggttaaa gccggagccg aaacggcaat gatgtgcggt
     4981 gctgaccacg atacctgtca ggcgattatt gacgtgacaa gtaagattca atttggttgt
     5041 gaagccgtcg cgctggcact ggatgttttc cagattggcc gtgcttttat ggcgacgaga
     5101 ggtttatctg gcgcagctgc aaaagtgctt gactccggtt ttggcgagga aatggttgag
     5161 cgtatggttg gtgcagggga agcagaaata gaggcgttgg ctgaaaagtt tggcgaagaa
     5221 gtgagcgaaa gtttttccaa acaatttgag ccgcttgaac gtgaaatggt ttcgccgggc
     5281 gagatggaag aggagtctgc cgaattttct cgtaacgtag aaaaaaatat gacaaaaaat
     5341 gcgggaaaaa gttttacgaa agagggggtg aaagccatgg caaaagaagc ggtaaaagaa
     5401 gccctggaaa aatatgcgca agaagggg
//
LOCUS       DAJVSD010000273         5378 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.273, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000273 DAJVSD010000000
VERSION     DAJVSD010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5378
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.273"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(10..777)
                     /locus_tag="OQP62_003994"
     CDS             complement(10..777)
                     /locus_tag="OQP62_003994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2094 domain-containing protein"
                     /protein_id="HCS1723406.1"
                     /translation="MRRPAVVSAPAMFGRLPDQRDYVRWRVGAEEGRIWQDWLNRQTW
                     VGSGRHIVLPEGQTTDEERDGWMHLSPRGEHDMPAPEHHPLPWSFVMSPGFLPMGGTT
                     DWLTGVLMASRDSVGRPWPLVIYQRCGREWLDESLQETQGWLYWLARLAAQHITPDTM
                     RRGRLTEQVDQLWAMWQPGPWWAQWLRGLRRTSQRSWELTGLPDEAPVVELPGVRYLP
                     WPGWPGKTLGQATPGQGWFWQQNSEGRYVDALRLAEK"
     gene            complement(777..4638)
                     /gene="tssM"
                     /locus_tag="OQP62_003995"
                     /pseudo
     CDS             complement(777..4638)
                     /gene="tssM"
                     /locus_tag="OQP62_003995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459283.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
     gene            complement(4875..5369)
                     /locus_tag="OQP62_003996"
     CDS             complement(4875..5369)
                     /locus_tag="OQP62_003996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000803074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723407.1"
                     /translation="MKPLFSVLKSNHNSSSFESPDFVDSKDFYAGIGYDQGKLGAQFE
                     NTCAARMSVALIKSGVKFKGRLLPIKEGKWKGRSIETGAKNLADILSQATVFGKPAVW
                     RDPTKFQTELGNKKGVVFFWKIDGYNGGSGSHIDLIEPTSAGAVCHSHCYFSCKQIWF
                     WELR"
BASE COUNT         1095 a         1777 c         1429 g         1077 t
ORIGIN      
        1 ccatgttcat tatttctccg ccagtcgcag cgcatccaca taccgccctt cactgttctg
       61 ctgccagaac cagccttgcc ccggtgttgc ctgccccagc gtcttgcccg gccagcccgg
      121 ccacggcaga taacgcacgc ccggcagttc tactaccggt gcttcatccg gcagcccggt
      181 cagttcccag ctgcgctgcg atgtacgtcg taacccgcgc agccactgcg cccaccacgg
      241 ccccggctgc cacatcgccc atagctggtc cacctgctcc gtcagccgcc cgcgccgcat
      301 cgtgtccggc gtgatatgct gcgccgccag cctcgccagc cagtacagcc agccctgcgt
      361 ctcctgcaaa ctctcgtcca gccactcccg accgcagcgc tggtaaatca ccagcggcca
      421 cgggcgtccc acgctatccc gtgacgccat cagcactccg gtcagccagt cagtcgtccc
      481 acccatcggc aaaaatcccg gcgacatcac aaagctccac ggcagcggat ggtgttccgg
      541 cgcgggcata tcatgttcgc cacgcggcga caggtgcatc cagccgtcac gctcttcatc
      601 ggtcgtctgg ccttccggca acacgatatg ccgcccgctg cccacccatg tctggcggtt
      661 cagccagtcc tgccatattc gtccctcttc agcgcccacc cgccagcgca catagtcgcg
      721 ctggtccggc aacctgccga acatcgccgg ggctgatacc accgctggcc ggcgcattac
      781 aacgccctcg ccggacaact gaagttctgc aacagctccc ggctgaccgg gttaaaatcc
      841 cgcccggcag tgatttccag caccacccgg cgaccgtcaa aatcatattc caccaattgg
      901 cgcccccgca ccgccgtttc ctgtaccttt ccggcgtcca gcagatgaaa cagcgcccac
      961 ggcccgccgg tcagtagcgt tgaggtgtcc tggcgaatac gcgggctggc ggtgatttcc
     1021 gccatcgagc cgttgcgcgg tcccggccac gtcactttca ggggccggtc cggaccatgg
     1081 gcgtagcgca gcacctgacc atcgatatca atcaccagtt ccgtgatggc cgggtccata
     1141 tccaccacgc taatctgcat cgaccaggaa aattttttcc tgccctcgct gttaaaaaac
     1201 acgctgcgga tctgcttcgc ctgctgaaac ggcgttaaat ccggcccctg caatgtcatg
     1261 ttgccttcgg tcggtttgta gcgccacggg tcgctggcgg tgtccgccag cggagccagt
     1321 tgtttgctcc agaaagcatc cagtacgccg ccgctggcga agatgcggtt aaagtcctcg
     1381 gcgctgacct cctgcggact atcggcgaac ggatagcgcc cgtcgatggc gtcacggcag
     1441 tcgtcgccca tcatcgcctc catctgggtg ttgagcacat cgccggtccc ggcgttgatt
     1501 ttgcgcgttc cctgcttcgt cagatccagc aggatgtttt tcagcggcgc aggcagtttc
     1561 gccgcctcca gttgcaactt gtctgcggca gtaatgcgcg ctggcaacgt ccccgccgcc
     1621 agcgcgctgt cagcaatggc cagttgggtg taatactcgt tgagcatggt cagcagcgaa
     1681 gcgatctgca tcgtcccacc gccgctctgt ccgccgtccg tccgcccggc aatgacctcg
     1741 cgcagcgcgg cgaaacggtc atccaccagc gttttttcca gccgctcttc cgggtgaata
     1801 tcctggaaca gttttgccgt ctgtaccact ttccccgcgt taccggacgc gcgctgcgcc
     1861 agttgtttct gtctggcctg cgggtccggc ggcggcacca gcgtggtctg ctccaccacc
     1921 gcttttccca gccgcatcag cggtgagtcc ggcgacgcca gggtgcgcag cacctgtaaa
     1981 tcataggcca ggccggaact gccctcttcc ccggcactgt tgatactatg gatactgtcc
     2041 agaaaatcct gccagcggcg ggcatattcc gtcaggtaca aacggcggac ttcgcgggcg
     2101 acagactgct cctgccccgg tatctggctg cgcaggctgt cagtcagctt ttttggcgta
     2161 ctctcccggc ccatcaccca gccatcgttc gccgtcgcca caaattccgg taatcgtttg
     2221 tcgaacagct cccggtaacc ttcacgggta aaaatacccg gcacgccccg atccagcggc
     2281 gcgccgttgc tacgcacaaa caccgttccc gcatccgcgc cgacggcgcg taccagcgtg
     2341 aactcctgcg gcgcttcgct ctccatcacc gccagcgccc gcgcatagat acgctcggta
     2401 ctggtgtgac cgtcgaggaa tgcccgcgcc tggcggatca gcgcctcatc tttctcatac
     2461 ggtgaatgca ccacccggct gccgtcaaac agcgcttcga tatgcgtcag cacggcggcg
     2521 cgcccgccaa acccggccac gctgtcgctg ttccccagat cgttaatcac ccacgactgg
     2581 atctccgccg cgttgtattt atcttcgtga tctttatcca gattcagtag cagatagatg
     2641 cgcagggcat catacgcagc tttactgtcc tgacgggcaa tggcgtctgc cagcacatac
     2701 tccatccgtt tcaccagcgg cggcagcagc agttgatcca gcagacggtt gtacagcgac
     2761 gccacgctgt cggttaccgg cggtacgctg tacaggccgt agcgccaggt cagcggcggc
     2821 gcgtccgggt ccagtcggcc aggcggacag ttcccttgcg ctgtccagca gtgccgggac
     2881 gggagccatc gccggtttac cggtgtaggc tttcacatca ccgtccagcc gggtcgcgcg
     2941 ggcgctgatt tcattcagat agtcgccgtt ggtctgctgg ctggtctgca tcccctgcca
     3001 caacaggaat gccagcacca gtaccagcag gtgcccgccg aggcgcagca ggcggtaacg
     3061 ccaggcccac tggaggtttg gctccaccag gtgcgcttca cggaaaataa actgtgtcag
     3121 caggtcatgc agaaagtagc tgcggttgcc gtccggcaga gcgtgtggga gagaggcgga
     3181 tgattcgcca cgggtggttt ttatcgcccg gacaaagcgc tgccagatac tcaactggtc
     3241 ggccacggcg tcggcctgcg cctgcgcggc gctggtgaaa aacaccccgc gcagcgtgtt
     3301 attcagttgc gtggcatcga attttgaatc gaggaagatc tgttcaatag cctccagcaa
     3361 cggctcgccg agggcggcga actcacgcgg gaaggtatac agccgctggc ggcttttaag
     3421 gtcgtactct tcctgtaacc gggtatccag tccctgatcc agccgcagcg tcaggcgcgc
     3481 cagctcctgc gcgcaggcgg catgcagcgc ctgcgggtcg cccgtttttc gcctgcggct
     3541 gtacggcaac gtaaagcccc agatttgtgc gcgaagatgg ctggtcagcg tacgaaaata
     3601 ctcgctgaac cccggcaaca aatccatttt agtgaccacc agatagaccg gaaagcgaat
     3661 ccccagggtc tcgcgcagtt ctgccagtcg cgcccgcaga gcggcgcagg ccgccaggcg
     3721 ttccgccggt ggctgtgcgg ttaaatccgc tacgtttagc gtcaggatca cgccgttaag
     3781 cggcgcgccg gggcgatgtt tacgcagcag accgagaaag ccctgccact ctccggcgtt
     3841 gcgctgcgcg gcgctcgctt cgccgccgtc atcgtggcgc gcgtagcgtc cagcggtatc
     3901 aatcaacacc gcttcgttgg taaaccacca gtcgcagtgt agcgtgccgc cacccggcac
     3961 tgtcaggatg cgcgaggtct gctccatttg ctccgccagc gggaactgca atccggtgtt
     4021 cagcagggcc gtggttttgc cgtcgccggg actgccgacc accatgaacc acggcagctc
     4081 atacagaaag cgttttccct cgaagatttt acgccagcca ggcatatcca cccgcaactg
     4141 ccgcagctgc cggatggcct gcgtgacaat atggttgacg gtgcgcaggt cggctttgat
     4201 ctcgcctgcc accggtacct cttccccgcg cggatgcagg aagcgacgca gcagttgttc
     4261 atccatacgc agcgcacgcc acagccggta caggccgtac agcgcgtaca tcagcaggat
     4321 gaaaccaatc agggtcaggc ggacccacag cggcgcaaac ggatggacat cgcccagggc
     4381 cagcagcggt gtgacgaagc caatcgccag gcacaggaca ctgatgccga tgatactcat
     4441 cgaccagttg accagccaca gtaccagcaa catcagcaac agggcaatgg tcaccacccg
     4501 gctgcccacg gaggccagcg ggcgcagggt atcaaatgac accagcggcc cgacaaacca
     4561 gaccagcagc gccagaacca gaacgcccac aatcgccagc gcgcgccggg aaaaaagcag
     4621 actgagaaat ttttgcatta tatttcgact cgccacccaa taatcagtaa cagcaaagcg
     4681 ctgagaccag aaaacaatct cccgttaccg taattaattt aaaaaaaata tagaaagctc
     4741 ttgaaaaata ataaatccgg aagtcaaaaa tacttcacgg accctgaacg tgtgttttcg
     4801 tctctcaacc cttcagaatt ccggcattat tacattccat ttcactcaaa tcacacgaac
     4861 ggaatttcag aattttagcg taattcccag aaccaaattt gcttacagga aaaataacag
     4921 tgtgaatgac atactgcccc ggcactggtc ggctcaatca gatcgatatg actaccactc
     4981 ccaccattat atccatcaat tttccagaag aagaccacac cttttttatt acccagttct
     5041 gtctgaaatt tagtcggatc acgccagacc gcaggtttac cgaaaacagt tgcctgcgaa
     5101 agtatatctg ccagattttt agcgcctgtt tcaatgctcc ggcccttcca cttgccctct
     5161 tttatcggga gaagacggcc tttaaacttc acacctgatt taattaatgc cacgctcata
     5221 cgggccgcac aggtattttc aaactgagca ccaagtttcc cctggtcata accaatgcct
     5281 gcatagaaat ctttcgaatc aacaaaatca ggactttcaa aagatgatga attatgatta
     5341 gactttagca ctgagaataa aggtttcatt ttttaact
//
LOCUS       DAJVSD010000274         5335 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.274, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000274 DAJVSD010000000
VERSION     DAJVSD010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5335
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.274"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            342..1013
                     /locus_tag="OQP62_003997"
     CDS             342..1013
                     /locus_tag="OQP62_003997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000068748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiH family protein"
                     /protein_id="HCS1723408.1"
                     /translation="MAQQVDGAAMPLDTEKVGIKGYLAFFLTIIFFSGVFSGSEGWWR
                     VFDFTVLNGSFGHVTGTQTFRGAGGTGAKDGFLFALELAPSVILSLGIIAITDGLGGL
                     RAAQQLMTPILKPLLGIPGICSLALIANLQNTDAAAGMTKELAQEGEITERDKVIFAA
                     WQTSGSAIITNYFSSGVAVFAFLGTSVIIPLVVILLFKFIGANLLRIWINIEERRHPA
                     QGAQS"
     gene            1010..1471
                     /locus_tag="OQP62_003998"
     CDS             1010..1471
                     /locus_tag="OQP62_003998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiG family protein"
                     /protein_id="HCS1723409.1"
                     /translation="MTTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKI
                     TGLLDWVGHICQPVMALWGLPGEAATVLLASLMSMGGAVGVAASLATAGALSGHDVTV
                     LLPAIYLMGNPVQNVGRCLGTAEVNAKYYPHIIAVCAINALLSIWVMQLIV"
     gene            1484..2656
                     /locus_tag="OQP62_003999"
     CDS             1484..2656
                     /locus_tag="OQP62_003999"
                     /EC_number="3.4.19.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-aspartyl-peptidase"
                     /protein_id="HCS1723410.1"
                     /translation="MPDLSAAEFTLLQGAHLFAPEDRGICDVLLANGKIIAVGADIPG
                     DIVPDCAVINLSGRMLCPGFIDQHVHLIGGGGEAGPTTRTPEVSLSRLTEAGITTVVG
                     LLGTDSVSRHPASLLAKTRALNEEGITAWMLTGAYHVPSPTITGSVEKDVALIDRVIG
                     VKCAVSDHRSAAPGGNQLTSMAAESRVGGLLGGKPGVSVFHMGSSKKGLQPLYDILEN
                     SDVPIGKLLPTHVNRSESLFEQALAFALKGGVIDITTSIPDPVAPAEGIARAVKAGVP
                     LSRVTLSSDGNGSQPLFDAAGNLTGIGVAGFESLLETLQTLVNHYGFSLTDALRPLTT
                     SVAAFLSLDGKGEIRPGNDADLLVFSADLRIEQVYARGKRMVNEGKACVKGTFEPA"
     gene            2775..3683
                     /gene="hypT"
                     /locus_tag="OQP62_004000"
                     /gene_synonym="qseD"
     CDS             2775..3683
                     /gene="hypT"
                     /locus_tag="OQP62_004000"
                     /gene_synonym="qseD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypochlorite stress DNA-binding transcriptional
                     regulator HypT"
                     /protein_id="HCS1723411.1"
                     /translation="MDVTGAGLHNIETKWLYDFLTLEKCRNFSQAAIIRNVSQPAFSR
                     RIRALEHAVGVELFNRQVSPLQLSEQGKIFHSQVRHLLQQLESNLTELRGGSDYTLRK
                     IKIAAAHSLSLGLLPTIVKQMPTQFTYAVEAIDVDQAVDMLREGQSDFIFSYHDENLQ
                     QAPFDNIRLFESRLFPVCANNGRGEPRYTLEQPHFPLLNYSQNSYMGRLINRTLTRHA
                     ELSFSTFFVSSMSELLKQVAMDGCGIAWLPEYAIRQEITDGRLIVLDADELVIPIQAY
                     AYRMNTRMSQVAETFWRDLRGLQAAL"
     gene            complement(3689..4423)
                     /locus_tag="OQP62_004001"
     CDS             complement(3689..4423)
                     /locus_tag="OQP62_004001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HCS1723412.1"
                     /translation="MKHTIGILGGMGPAATADMLEKFVELRHVSCDQQHIPLIVSSIP
                     DIPDRTACLLSGGPSPYRYLERYLHMLEDAGAECIVIPCNTAHYWFDDLQNVAKARMI
                     SILDATLGDIPPSARHVGLLATNATLATGLYQKKALARGLTLIQPEDAGQALVMQAIY
                     TLKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTASL
                     VRAAIRWYESWPDTRASLTGEQRLTA"
     gene            complement(4662..5192)
                     /locus_tag="OQP62_004002"
     CDS             complement(4662..5192)
                     /locus_tag="OQP62_004002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463368.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
                     /protein_id="HCS1723413.1"
                     /translation="MAGKWNVLSLLAFRPCQPALPHDNHGGGMDAIYLKLDGIEGESQ
                     IKGFENQIKLIAYNHNPTKRESGEARGTYIGGLTLTKPVDLATLGLYEHYCNGKTVKE
                     GVLTLCRSDKGAMLPFIIYTLTNVRISRMSNHGDAEGSATETVDLVYSHIRWDIPALA
                     SKSKTRRPLHRQALWR"
BASE COUNT         1163 a         1483 c         1398 g         1291 t
ORIGIN      
        1 caagctgacc catcagcggc tactgacctg accgtgacaa ttcctcttaa ggcgtgaaat
       61 tgactaacgt caaatttatt tccccttttt cctgctcccg gctctggcct gcgtcaacac
      121 ctgtttcttt gcttttttac cgcgcgttat accgtccacg gttccccgcg cctccggcag
      181 tagcgaggat ggtgattttt cgcgctgcta tgcaagaaac gcatagcacg atacatactt
      241 gcattttgtc cttaccctta tggctgataa ggtctttctg tttcgggctt tttggcctgt
      301 ggctacaacc aacacatcat caaaaaaatt cggggatcgc tatggcgcaa caagtggacg
      361 gggcggccat gccgcttgat acagaaaagg tcgggataaa gggatacctg gcgttttttc
      421 tcaccattat tttcttttcc ggcgtatttt ccggaagcga aggctggtgg cgcgtttttg
      481 attttaccgt actcaacggg tcattcggtc atgtgaccgg tacgcagacc tttcgcggcg
      541 cgggcggaac gggcgcgaaa gatggcttcc tttttgcgct ggagctggcg ccgtcggtta
      601 tcctttctct gggtatcatc gcgattacgg atgggcttgg cggtctgcgg gcggcacagc
      661 aattgatgac gcccatcctg aaaccattgc ttggcattcc cggcatttgc tcactggcgc
      721 tgatcgccaa cctgcaaaat accgacgccg cggcgggtat gaccaaagag ctggcgcagg
      781 aaggcgaaat caccgaacgc gataaagtga tttttgccgc ctggcagacc agcggcagcg
      841 ctattatcac caactatttc tcctccggcg ttgcggtatt cgcctttctg ggaacgtcag
      901 tcatcattcc gctggtggtc attctgctat tcaaatttat cggcgcaaac cttttgcgca
      961 tctggattaa catcgaagaa cgccgtcacc ctgcgcaagg agcccaatca tgacgactca
     1021 ggtacgtaag aatgtcatgg atatgtttat cgatggcgca cgccgcggtt ttaccatcgc
     1081 cacgaccaac ctgttaccca atgtggtcat ggcatttgtc attattcagg cgctgaaaat
     1141 taccggtctg ctcgactggg taggccatat ctgccagccc gtgatggcgt tgtgggggct
     1201 tcccggcgaa gcggctacgg tgcttctggc ttcgctgatg agtatgggcg gcgccgttgg
     1261 cgtggcggcc agtctggcta ccgccggcgc gctaagcggc cacgatgtta ccgtactact
     1321 gccagccatt tacctgatgg gaaacccggt acagaatgtc ggccgctgtc tcggtactgc
     1381 cgaagtcaac gccaaatatt acccgcatat tatcgcagtc tgcgccatca atgcgctgct
     1441 gtcgatctgg gtcatgcagc ttattgttta ataaggagtt atcatgcctg atttatccgc
     1501 cgcggagttt accttgttac agggtgcgca cctgtttgcg ccagaagacc ggggcatctg
     1561 cgatgttctg ctcgcgaatg gcaaaattat tgccgtcggc gctgacatcc ccggcgatat
     1621 cgtaccggac tgtgcggtga ttaatcttag cggtcgtatg ctgtgcccgg gctttatcga
     1681 ccaacacgtt catctgatcg gcggcggcgg cgaagcgggg ccgacgacgc ggacgccgga
     1741 agtctctctg agccgcctga cggaagccgg gataacaacg gtcgtcggcc tgcttggcac
     1801 cgactccgtc agccgtcatc ccgcgtcgct gttagccaaa acgcgagcgc taaatgagga
     1861 ggggatcacc gcctggatgc tcacgggcgc ttatcacgtt ccgtcgccga ccattactgg
     1921 ctcggtagaa aaagacgtcg cgctgatcga tcgcgtcatt ggcgtgaaat gcgcagtctc
     1981 cgaccaccgt tccgccgcgc ccggcgggaa tcaactcacc agcatggcag ccgaatcacg
     2041 cgttggcggc ctgctgggcg gcaaacccgg tgtcagcgtt tttcatatgg gcagcagcaa
     2101 aaaagggtta cagccgctgt atgacatcct ggaaaacagc gacgtgccga tcggtaaact
     2161 gctgcctacc cacgtcaacc gtagcgaatc gcttttcgag caggcgctgg cgtttgcgct
     2221 taaaggcggc gtgatcgaca ttaccaccag tatcccggat cccgtcgcgc cggcggaggg
     2281 cattgccaga gcggtaaaag ccggcgtccc gctttcccgg gtgacgctca gttcagacgg
     2341 caacggcagc cagccgctat ttgacgctgc cggaaatctg acgggtatcg gcgtcgcggg
     2401 cttcgaaagt ttgctggaga cgttgcagac gctggttaac cactacggat tcagcctgac
     2461 cgatgctctg cgtccgctga caaccagcgt agccgccttc ctcagtctgg acggcaaagg
     2521 cgaaatccgt cccggtaacg atgcggatct gctcgtcttt agcgcagatt tacgcattga
     2581 gcaggtgtat gcgcgcggca aacgcatggt caatgagggg aaagcctgcg taaaaggtac
     2641 ctttgaaccg gcgtaattcc cgctagtttc agactgcccc atcacggcat tctgaaagag
     2701 gacgggataa gtggttgtca gccgcccgaa tggacgtaga atgccccttc ggacggctga
     2761 caggataacg gtaaatggat gtaactggag caggtttgca caatattgag acaaaatggc
     2821 tatatgattt tctgacgctg gaaaagtgcc gcaatttctc tcaggccgcc attatccgca
     2881 acgtatcgca acccgctttt agccggcgga ttcgcgccct ggaacatgcc gtgggcgttg
     2941 aactgtttaa ccgacaggtc tcgccgctac agctttccga acagggtaaa atctttcact
     3001 cccaggttcg ccacctgtta cagcagctgg aaagtaatct gaccgaactg cgcggcggca
     3061 gcgattatac gctgcgtaaa atcaagattg ccgccgccca ctcgctctcc ctcggcctgt
     3121 taccgaccat cgttaagcag atgccgacgc agtttaccta cgccgttgag gcgatagatg
     3181 tcgaccaggc ggtggatatg ttacgtgagg ggcaaagcga ttttatcttt tcctatcacg
     3241 atgaaaacct gcaacaagcg ccgtttgata atatccgcct gtttgagtcg agactgtttc
     3301 cggtttgcgc caacaatggc cggggcgagc cgcgctatac gcttgagcag ccgcactttc
     3361 ccctgcttaa ttacagtcaa aactcctata tgggccggct gataaatcgt accctgactc
     3421 gccatgctga actgagtttc agtacatttt tcgtctcttc gatgagtgaa ttgttaaaac
     3481 aggttgcgat ggacggctgc ggaatcgcct ggttacccga gtatgctatc cgtcaggaga
     3541 ttaccgacgg gcgcctgata gtgcttgatg ccgacgaact ggttatcccg atccaggctt
     3601 atgcttatcg catgaatacc cgcatgagtc aggtagccga aacattttgg cgcgacctgc
     3661 gtgggcttca ggccgcgctg taaacacatc aggcggtaag gcgttgttcc ccggtcaaag
     3721 aggcgcgggt gtctggccag gactcatacc aacgaatcgc cgcgcgcacc agcgacgctg
     3781 tggaatcaat catcgggcac gctatcgcgc gttcatgtcc ggccacaata agcggaattt
     3841 cggtacaccc cataataatt gcctgagcgc cacgggcaat aaggctatcg atttgcggca
     3901 gcagcagcgc ttgcgccgca gttttatcgc cacgtttaag cgtataaata gcctgcatta
     3961 ccaacgcctg ccccgcgtct tctggctgaa ttaacgtcag cccccgcgcc agcgctttct
     4021 tttgatataa cccggttgcc agcgtcgcat tggtcgccag cagaccaacg tgccgcgccg
     4081 atggcggaat atcccccagg gtggcgtcca ggatgctgat cattcgcgct ttcgcgacgt
     4141 tctgtaaatc atcaaaccaa taatgcgcag tgttgcatgg gataacgata cactccgccc
     4201 cggcgtcttc cagcatatgc agataacgct ccagataacg gtatggcgaa ggcccgccgg
     4261 ataacagaca tgctgtacga tcgggaatat cagggataga gctgacaatg agcgggatgt
     4321 gttgttgatc acaactgaca tgtcgcaatt caacaaattt ttccaacata tccgccgttg
     4381 ccgcaggtcc catccccccc agtatcccaa tggtgtgttt catcgctttt cccgcttatt
     4441 tacgtcaagg tcagaaacac actatcaact tgatgtgtat ataaaaaatg ccgttttatt
     4501 agcggctatg cgtaaaaatc ataacgggtg taagggccat gcgttatcgc cttttcaggc
     4561 aatcgattgg ttacatgagc gctcatcagc cttcgcaagc cgctaaatgc catttcgcta
     4621 tacagcatcg cccactgcga gtccgcaagc ttgttttgtc ctcatcgcca cagcgcctgt
     4681 cggtgaaggg gccgccgtgt tttgcttttc gacgccaatg cgggaatatc ccagcgaata
     4741 tggctataaa ccaaatccac ggtctccgtg gcgctgcctt cggcgtcgcc atgattgctc
     4801 atgcgtgaaa ttcgcacatt ggtgagcgta taaataataa atggcagcat tgcgccctta
     4861 tcactacggc ataatgtcag cacgccttct ttcaccgttt tcccgttaca atagtgctca
     4921 tagaggccaa gcgtagcaag atcgactggc tttgtcagcg tcaaccctcc aatatatgtc
     4981 cctctcgctt cgccggactc ccgtttcgtc gggttgtggt tgtaagcaat aagttttatt
     5041 tggttttcaa aacctttgat ctggctttcg ccttcaatac cgtccagttt taaatagatg
     5101 gcgtccatcc cccctccgtg attatcatgc ggcaaagcag gctgacaagg acggaacgcc
     5161 aacaatgaaa gaacgttcca ttttccagcc atttcgttgg tgtctctgta taccagatta
     5221 aataccgaca atctgctata actggattct tgctaaatac cttctgccat caacaatcca
     5281 ttttacaata gcgctactga cctgaaatct attacgcctg gcattcaagc atcgt
//
LOCUS       DAJVSD010000275         5327 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.275, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000275 DAJVSD010000000
VERSION     DAJVSD010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5327
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.275"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            90..800
                     /gene="tcfA"
                     /locus_tag="OQP62_004003"
     CDS             90..800
                     /gene="tcfA"
                     /locus_tag="OQP62_004003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001539136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone TcfA"
                     /protein_id="HCS1723414.1"
                     /translation="MNFKDTLPGVFLCVAMFACGHARANMLVYPMAAEINSSREEATS
                     LFVYSKSDHVQYIRTRIMRIEHPGMPQEKEVPAGNDIETGLVVSPEKFALSPGTKKTI
                     RVISTQAPEREEAWRVYFEAVPELEDDPQAGGKQNSSVSVNLVWGVLLRVSPSDPRPA
                     LVTDGHHLLNTGNTRLSLIRAGNCDTTCHWQNIGKSIYPGGSADIPAGIKSNAFRVEY
                     RTGANSPVISADLTAAGK"
     gene            851..1426
                     /gene="tcfB"
                     /locus_tag="OQP62_004004"
     CDS             851..1426
                     /gene="tcfB"
                     /locus_tag="OQP62_004004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001056553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein TcfB"
                     /protein_id="HCS1723415.1"
                     /translation="MYTECTYITVINNKARLFFMNMKTSFIAAAVALATVYSFSVSAV
                     QKDITVTANIDSTLELLQADGSSLPSTMKLDFMPGKGLVHKSLQTRLYSNDQTKSVNV
                     KLLNAPQLINVLDPTKTIDMEVTLGGRSLTTTNSVLEAKTLFPDGKTGDASALLNLDI
                     GQKAGAALQNLPAGEYSGLVSLVISQAVTAG"
     gene            1535..4222
                     /gene="tcfC"
                     /locus_tag="OQP62_004005"
     CDS             1535..4222
                     /gene="tcfC"
                     /locus_tag="OQP62_004005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000092509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial outer membrane usher protein TcfC"
                     /protein_id="HCS1723416.1"
                     /translation="MSRYFWMYYLLGLCSFTSQATLIPPPGFESLLEGQTEQIEVLLP
                     GHSLGLFPVVVKPDTVQFMSPLMVLESSGLAALPAAERQKALAALSRPLLRNSNLVCG
                     VSEAKDSSECGYVATDKEDVAVIFDENNAQLSLFLNRDWLPDEERRDKRWLTPTPEGV
                     SAFIHRQTLYLSDDLHSRNMTLNGSGALGLGDGRYLGGDWAAIWNQSEHYNNSQAWFD
                     NLFVRQDLGNQYYLQAGRMDQRNLSSATGGDFGFSLLPLSRFDGLRTGTTQAYVNHEV
                     DHNATPVMVQVTRNARIDIYRGSELLGSQFLTPGMHTLDTHSLPPGSYPLALRVYEDG
                     ILRRTETQPFSKGGNSFSAQTQWFIQGGLEDTGDKASHYDGETVMAAGFQTGLRKNIS
                     LTEGISLAHEAWYSETRLNSQHAVLDGTLDLSAGILHGTDSTSGNTEQVTYNDGFSAS
                     LWRNHTESDACSGRHPQSVHASMTCQTSMNASLSVSVGNWYALLGYSTSRTEGRPVYR
                     GYDDNSDKENVFWRQAYIPASHRESAQASATYSLNMAGMNINTHGGVWRTRNDGVNDD
                     GLFMSVSVSYASQPPTMTGSNRYTSAGTDIHSSRNQKTQTSWNVNHVRSWQQDLYREL
                     SVGFSGYNDDSWSGSLGGRMSGRMGELSATISNSHQRNAGSASSLTAGYSSSLALSRN
                     GLFWGGGQDGEPASGMAVNVESEGDEGSSGKVVSVRGSSQPFSLGFGQQSLLLMEGYN
                     ATEVTIEDAGVSSQGMAGVKAGGGSRCYFLTPGHLLVHNISASMSRLYVGRVLDKDGR
                     PLLDAQPLNYPFLSLGPSGRFSLQSEHKESSLWLLSKNRILRCPMSVHKRRDVMQVVG
                     DVRCELSDVDALPQALQISPRVIRLLNVAGLLRHSVQEA"
     gene            4245..5324
                     /gene="tcfD"
                     /locus_tag="OQP62_004006"
     CDS             4245..5324
                     /gene="tcfD"
                     /locus_tag="OQP62_004006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000066477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein TcfD"
                     /protein_id="HCS1723417.1"
                     /translation="MSNKMKWTSMTAHWSAIINFIRKYVYPARIIAILLMAGATLPQV
                     ADAITVDLNYDKNNVAVITPVWSQEWSVANVLGGWVCRSNRNENEGACEETHLVWWYA
                     FGAYSKIRLRFREQISHAEITLILLGSVRDACYTGVINMNAAACQWGRSLKLRIPSEE
                     LAKIPTSGTWKATLVLDYLQWGGDDPLGTSTTDITLNVTDHFAENAAIYFPQFGTATP
                     RVDLNLHRMNASQMSGRANLDMCLYDGGVKARSLQMKIEGSNKSGTGFQVIKSDSADT
                     IDYAVSMNYGGRSIPVTRGVEFSLDNVDKAATRPVVLPGQRQAVRCVPVPLTLTTQPF
                     NIREKRSGEYQGTLTVTMLMGTQTP"
BASE COUNT         1332 a         1212 c         1470 g         1313 t
ORIGIN      
        1 actgaatcgt aatttgcttc tttatgctga taactttctg tctatgctaa tactaaaatt
       61 tagatgactt ttatacggta aaatctggta tgaattttaa agatactctt cccggggtgt
      121 ttctctgtgt cgctatgttt gcatgtggtc atgccagggc gaatatgctc gtttatccca
      181 tggcggcaga aattaatagt agccgcgaag aggccacctc gctgttcgtc tattctaaat
      241 cagatcatgt gcaatatatt cgaacaagaa tcatgcgtat tgaacacccc ggtatgccac
      301 aggagaagga ggtaccagca gggaatgata tagagacagg acttgttgtc tccccggaga
      361 aatttgctct ttccccggga acaaaaaaaa caatacgtgt tatcagtact caggcaccgg
      421 aaagagagga agcctggcgg gtatacttcg aggctgttcc tgaactggaa gatgatccac
      481 aggcaggcgg aaagcaaaat tcatccgtaa gtgtgaatct tgtctggggg gtgttgctgc
      541 gtgtttctcc gtcagacccc aggcctgcgc tggtaacgga cggtcaccac ctgctgaata
      601 cgggaaacac acggctttct cttattcggg ctggcaactg cgacaccaca tgccactggc
      661 agaatatagg caaaagtatt tatcccggcg ggagtgctga tattccggcc ggaataaaaa
      721 gtaatgcatt tcgtgtggaa tatcgtacgg gtgcaaattc accggtaatc tctgctgatt
      781 taacagcagc cggaaagtaa aaacacacgg agcgtacgct ataccctaca tttattctca
      841 gggggagcgg atgtataccg agtgtacata tatcactgta ataaacaaca aagcaaggtt
      901 attttttatg aacatgaaaa catcttttat tgccgcagct gtggcattgg ccaccgttta
      961 ttctttttct gtttctgcgg ttcagaagga tattaccgtc actgccaata ttgacagtac
     1021 acttgaactg ctgcaggccg atggttcatc cctcccgtcg actatgaagc tggatttcat
     1081 gccgggtaag ggcctggtcc ataaatcact ccagacccgc ctttacagca acgatcagac
     1141 caagtcggtt aatgtaaaac tgttgaatgc tccacaactt atcaacgtcc tggatcccac
     1201 caaaaccatt gatatggaag tgactctggg aggacggtca ctgaccacca ccaattctgt
     1261 actggaagct aaaaccctgt tcccggacgg aaaaactggc gatgcttcag ctctgctgaa
     1321 cctggatatt ggtcagaagg ctggagcagc cttacaaaac ctgcctgccg gtgaatacag
     1381 cggattggtc agtctggtga tttcacaggc tgtcactgcc ggctaataac tggttattag
     1441 ctcttcatct gatccggttt tgggggggca ccgttcgtac ctgaaccgga tccggtattg
     1501 atcttattat tcattgcaat tcaggtctct ttacgtgagt cgttatttct ggatgtatta
     1561 tttactggga ttgtgcagtt ttaccagcca ggcaactctt attccccctc ctggatttga
     1621 atctctgctg gaaggacaga ctgagcaaat tgaagtgttg ctaccagggc attcactggg
     1681 attatttccg gtggtggtta aaccggacac cgtgcagttc atgtccccat tgatggtact
     1741 tgaaagcagt gggcttgccg cgttgccggc cgcagaacgg caaaaagcgc tggctgcact
     1801 cagccgtccg ttgctacgta acagcaatct ggtctgtggt gtctcagaag caaaagacag
     1861 cagcgagtgt ggttacgtgg caacagataa agaggatgtt gcggttattt ttgatgagaa
     1921 caacgctcag ttatctttgt ttcttaaccg ggactggttg ccggatgaag aacgacgtga
     1981 taaacgctgg ctgactccga ccccggaggg tgtcagcgca tttattcacc gccagacgct
     2041 gtatctgagt gatgatctcc acagtcgtaa tatgacactg aatggtagcg gtgccctggg
     2101 gcttggtgac ggtcgttatc tgggaggcga ctgggcggct atctggaatc agtcagaaca
     2161 ttacaataac agtcaggcct ggtttgacaa tctgtttgtc cgtcaggatc tcggcaatca
     2221 gtattatctc caggctggtc ggatggatca gcggaatctg tccagcgcca cgggggggga
     2281 ttttgggttc agtctgcttc ccctgagccg gtttgatgga ttacgaaccg ggaccaccca
     2341 agcttatgtt aaccatgagg tggaccataa tgccactccg gttatggttc aggttacccg
     2401 aaatgcccgt attgatattt atcgtggcag cgagttgctg gggagtcagt tcctgacccc
     2461 gggaatgcat accctggata ctcattctct tccaccggga agctatcctc tggcgttgcg
     2521 ggtgtatgag gatgggattc tgcggcgaac ggagacccag cccttcagta aggggggcaa
     2581 tagcttcagt gcacagaccc agtggtttat tcagggcggg ctggaagata ccggggataa
     2641 agccagccat tatgacggtg agactgtcat ggctgccgga ttccaaactg ggctgcggaa
     2701 aaatatcagt ctgaccgaag gtatctctct ggcacatgag gcctggtaca gtgaaacccg
     2761 actgaattca cagcatgcag tgctggatgg cacgctggac ctttctgccg ggatactgca
     2821 tgggacagac agcacgagcg gtaacactga gcaggtgaca tacaacgacg gattttccgc
     2881 gagtctgtgg cgtaaccata cggaaagtga tgcctgtagt ggtcgtcatc cacagtcagt
     2941 gcatgccagt atgacctgcc agacttcgat gaacgcctcc ctgtcggttt cggtggggaa
     3001 ctggtatgcc ctactgggat acagtaccag caggacagaa ggtcggccgg tttaccgggg
     3061 atatgatgat aacagtgaca aagaaaatgt gttctggcga caggcataca tccctgcctc
     3121 tcaccgcgaa tctgctcagg ctagtgcaac gtacagcctt aatatggctg gcatgaatat
     3181 taatacccat gggggagtat ggcgaacccg aaatgacgga gtgaatgatg atggcttgtt
     3241 tatgagtgtc agtgtgtcat atgcctctca accaccgaca atgactggca gtaataggta
     3301 tacctcagcc gggaccgata ttcacagtag ccggaatcaa aaaacacaga cgtcctggaa
     3361 tgtgaaccat gtgagatcct ggcagcagga tctgtatcgt gaactgtcgg tgggtttctc
     3421 cggttataac gacgacagct ggagcgggag tctcggcgga cgcatgagcg gccgtatggg
     3481 tgaactgagc gccactatca gtaactccca tcaacgtaat gcgggcagcg ccagttcact
     3541 caccgctggc tacagctcgt ctctggcgtt atcccgtaat ggactgttct ggggaggtgg
     3601 tcaggacggt gaaccggcct ctggcatggc ggtgaacgtg gagtcagagg gggacgaggg
     3661 cagtagcggg aaagtagtca gcgttcgtgg cagcagccag ccgttcagtc tcggttttgg
     3721 tcagcagtcg ctgttgctga tggaaggcta taacgccacg gaggtgacca ttgaggatgc
     3781 aggggttagt tcacagggta tggcaggcgt aaaagcggga gggggaagca ggtgttactt
     3841 cctgacaccc gggcatctgc tggttcacaa catcagcgcc agtatgagcc gactgtacgt
     3901 tggccgcgta ctggacaagg atggcagacc gctgctggac gcacagccac tgaactatcc
     3961 atttttgtcg ttgggacctt ccgggcgatt tagcctgcag agcgagcata aagaatccag
     4021 cctgtggctg ctgtctaaaa acaggatcct gcgttgtccg atgtcagtac ataaacgtcg
     4081 ggatgttatg caggtagtgg gtgatgtgcg gtgtgaatta agtgacgtgg atgccctgcc
     4141 acaggcgttg caaatatcgc cgcgggtcat ccgtttgctg aacgtggcag gtttgctgcg
     4201 ccattccgtt caggaagcct gacgtagaga taaaggcgtt aactatgagt aataaaatga
     4261 agtggacgag tatgacagcc cattggtcag caattattaa tttcatccga aaatatgttt
     4321 atccagcaag gataattgcc atcctgctga tggctggcgc tacactgcca caagtcgccg
     4381 atgcgattac cgtcgacctg aattacgaca agaacaatgt agcggtcatc actcctgtct
     4441 ggtcccaaga atggagtgta gcaaatgtgt tggggggatg ggtatgtcgt tcaaacagga
     4501 atgaaaatga gggggcgtgt gaagaaacac atttggtatg gtggtatgct tttggagctt
     4561 attcaaaaat tcgtctgcgt ttcagagaac aaatcagcca tgctgaaatc acgctcatac
     4621 tgctcggcag tgttcgtgat gcctgttata ctggtgtcat caacatgaac gctgctgcat
     4681 gtcaatgggg taggtcgctg aaacttagga taccttcaga agagcttgcg aagataccta
     4741 caagcggaac atggaaagca acgttagtcc tggattattt acaatggggc ggagacgatc
     4801 ctttaggcac atcaactaca gatatcacgc tgaatgtaac agaccacttt gctgaaaatg
     4861 cggctattta ctttccgcaa tttggtacag caacgccccg ggtggacctg aatcttcacc
     4921 ggatgaatgc ctcacaaatg tcgggcaggg ctaatctgga tatgtgtctg tatgacggag
     4981 gtgtgaaagc ccgttcatta cagatgaaga tagaaggaag caataagtca ggtacgggat
     5041 ttcaggttat aaagagcgat tctgctgata cgattgatta tgcggtcagt atgaattatg
     5101 ggggacgaag tattcctgtc acccgtggcg tggagttcag tctggataac gtggataaag
     5161 cagcaacgcg tccggtggta cttcccgggc aacggcaggc ggtacgttgt gtgccagtgc
     5221 cccttaccct gacaacacaa ccctttaaca tcagagagaa gcgttctggt gagtatcagg
     5281 gaacgctgac agtgacaatg ctgatgggaa cacaaacccc ctgacag
//
LOCUS       DAJVSD010000276         5306 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.276, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000276 DAJVSD010000000
VERSION     DAJVSD010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5306)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5306)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5306
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.276"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..675
                     /locus_tag="OQP62_004007"
     CDS             <1..675
                     /locus_tag="OQP62_004007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HCS1723418.1"
                     /translation="VTILGSRIIYPSTASSVDVQLKNNDAIPYIVQTWFDDGDMNTSP
                     ENSSAMPFIATPPVFRIQPKAGQVVRVIYNNTKKLPQDRESVFWFNVLQVPPTNIGSD
                     SGKNKMLVMLRSRIKLFYRPDGLGKPDNLAKKLQIKTVNKGSGKSGIVIVNPQPWFAS
                     LSNLNVKVNGASYNLDADMIAPFSSQTWWLPGKRSLKSFSGTVTVTLVNDLGARISES
                     YDVPHH"
     gene            659..3220
                     /locus_tag="OQP62_004008"
     CDS             659..3220
                     /locus_tag="OQP62_004008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial outer membrane usher protein"
                     /protein_id="HCS1723419.1"
                     /translation="MSPTINLNRKSLALLIAIVCSGSAQGEEYYFDPALLQGATYGQN
                     IARFNEQQTPSGDYLADVYVNGTLVASSTNIRFNAVKEGQQAEPCLPLSVMKAAQIKS
                     LPETDAATECRPLREWVPHAGWQFDSATLRLLLTIPMTELTHKPRGYISPSEWDSGAL
                     ALFLRHNTNWTHTENTDSHYRYQYLWSGLNMGVNLGLWQVRHQSNLRYANSNQSGSAW
                     RYNSVRTWVQRPVASINSILSLGDSYTDSSLFGSLSFNGVKLVTDERMRPQGKRGYAP
                     EVRGVAASSAHVVVKQLGKVIYETNVPPGPFYIDDLYNTRYQGDLEVEVIEASGKTSR
                     FTVPYSSVPDSVRPGNWHYSLAFGRVRQYYDIENRFFEGTFQHGVNNTITLNLGSRIA
                     QRYQAWLAGGVWATGMGAFGLNATWSNARAEHNERQQGWRAELSYSKTFTTGTNLVLA
                     AYRYSTNGFRDLQDVLGVRREAKTGIDYYSDTLHQRNRLSATVSQPLGRLGTLNLSAS
                     TADYYNNQSRITQLQMGYSNQWRNISYGVNIARQRTTWDYDRFYHGVNEPLDVSSRQK
                     YTETTMSFNVSIPLDWGENRTSVAMNYNQSSQSRSSTVSMTGSSGENSDLSWSVYGGY
                     ERYRNSNSDSSAPTTFGGNLQQNTQFGALRANYDQGDNYRQEGLGASGTLVLHPGGLT
                     AGPYTSDTFALIHADGAQGAIVQNGQGAVVDRFGYAILPSLSPYRINNVTLDTRKMRS
                     DAELTGGSQQIVPYAGAIARVNFATISGKAVLISVKMPDGGIPPMGADVFNGEGTNIG
                     MVGQSGQIYARIAHPSGSLLVRWGTGANQRCRVAYQLDLHTKEPFLYLNKICEKE"
     gene            3225..4550
                     /gene="stbD"
                     /locus_tag="OQP62_004009"
     CDS             3225..4550
                     /gene="stbD"
                     /locus_tag="OQP62_004009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial usher protein StbD"
                     /protein_id="HCS1723420.1"
                     /translation="MLFSFRTLLFITSLFVSAGTWSSCIKVTDKSALSDAAIKAGYTA
                     QNWIGALDTNTGNIGLPTVISISNSETFQPSGTLLASGIGNFLTAATGTPYSSKQVLY
                     RCDSADAGKLYEMYSTNGDSAFAGAFFTPEVEGAYYDVERNVAVRMTNLSTGEYYSRF
                     WKERQLTADSWFQDDKYIYIPASAFSNVLYEMFKIDSRKYFAYQNPMDRDTWTQPRGY
                     IAFKGPGLITERIKAGLDHASDYYGWPSYWPGAWSTYNSVTYVRGALCKITDYPAIVK
                     IPPVAVGILAAGGNSQAPFHVSLECESGAVSSALPSTSAANVAMGFVVNQPTAVAAAR
                     RLGLTTSAGGLSWLLDTHYGEPGVASGVGIRIYNDAGTPINLLPDRIKTGTGNARGWY
                     GYKDLTTRVSSGSVETYSGDFTASLEALGGQTVTAGSVNAQLQAVVSFQ"
     gene            4516..5274
                     /locus_tag="OQP62_004010"
     CDS             4516..5274
                     /locus_tag="OQP62_004010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial assembly chaperone"
                     /protein_id="HCS1723421.1"
                     /translation="MRNYRQWLVFSKVILTLLGLTGWYGPAQAAVNIDRTRIIFASDE
                     VAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLL
                     SSRQQLATDRESLFWLNIYQIPPVTQDIKNHPRKLVLPLRLRLKILIRPTGLKAPTEA
                     EEKKLRFIAKENTIRIVNPTSWYMSLTLTMDNKKSIGDIMVAPKTALDVPLTRSPTPG
                     ASINYAVINDSGNWRQYTAILEKYISKSNFIPEF"
BASE COUNT         1360 a         1371 c         1353 g         1222 t
ORIGIN      
        1 gttactattt tgggtagccg aataatttac ccatcaacag cctcctccgt agatgtgcag
       61 ttaaaaaata atgatgcaat accttatatc gtacaaacct ggtttgatga tggcgatatg
      121 aataccagcc cggaaaatag cagcgcgatg ccgtttattg ccacgccgcc agtatttcgt
      181 attcaaccca aagcaggcca ggtggtacgc gtaatttata acaacacaaa aaaattgccg
      241 caggatcgtg aatcagtatt ctggtttaac gtattacagg tgccaccaac gaatattggc
      301 agcgacagcg ggaaaaataa aatgttggtg atgctacgct caagaataaa gcttttctat
      361 cgtcctgacg ggctaggtaa acctgataat ctggcgaaaa aactacagat taaaacggta
      421 aataagggtt ctggaaaaag cggtattgtt atcgttaatc cgcagccctg gtttgcctct
      481 ttaagtaacc tgaatgtaaa agtgaacggc gcttcgtata acctggatgc agacatgatt
      541 gccccttttt ccagtcaaac ctggtggctg ccgggcaaac ggtcactcaa atccttctcc
      601 ggtacagtca ccgttacttt ggttaacgac ctgggcgcaa ggataagcga gagctacgat
      661 gtcccccacc attaatttga accgcaaaag ccttgcgcta ttgatcgcca tagtttgctc
      721 aggctccgcg cagggtgaag agtattattt tgatcctgcg ctacttcagg gggccactta
      781 cggacaaaat attgcccgtt ttaatgaaca gcaaacgcct tccggagact atcttgccga
      841 cgtttacgtt aatggcacgc tggtagcctc gagcactaat attcgattta atgctgtaaa
      901 agagggtcaa caggctgaac cctgcctgcc cttatcggtg atgaaagcgg cacaaataaa
      961 atcactcccc gagaccgacg ctgcgaccga gtgtcgcccg ctcagggagt gggtacctca
     1021 tgccggctgg caatttgata gcgccacgct tcgcctgttg ctgacgattc caatgaccga
     1081 acttacgcac aaaccgcgcg gttatatctc cccttcagag tgggatagcg gcgcgctggc
     1141 gctgttttta cgccataaca caaactggac ccacaccgaa aataccgata gccattatcg
     1201 ctaccaatac ttatggagcg gtttaaacat gggcgttaac ctcggacttt ggcaggtccg
     1261 tcatcaaagt aatctgcgct atgccaatag caaccagagc ggaagcgcct ggcgctataa
     1321 tagcgttcga acctgggtgc aaagacctgt cgcatctatt aacagtatcc tgtcgctggg
     1381 cgatagctat acggactcca gcttattcgg cagtctgtcc tttaacggag ttaagcttgt
     1441 caccgacgag cggatgcgcc ctcagggcaa acgcggttat gcgccggaag ttcggggcgt
     1501 agcggccagt agcgcgcacg tggtagtaaa acaactgggg aaagtgattt atgaaaccaa
     1561 cgttccgccg ggcccatttt atattgacga tctgtacaac acccgttatc aaggcgatct
     1621 ggaggtagag gttatcgagg ccagcggtaa aacctcacgt ttcaccgtgc cttattcttc
     1681 cgtgccggat tcggtacgtc ccggtaactg gcactattcg ctggccttcg gcagggttcg
     1741 tcagtactac gatattgaaa atcgtttctt tgagggaacg ttccagcacg gcgttaataa
     1801 caccattacc ctcaacctcg gttcacgaat tgcgcagcgt taccaggcat ggctggcggg
     1861 cggcgtctgg gccaccggta tgggcgcgtt cggccttaac gccacctggt cgaatgcgcg
     1921 cgcagagcat aacgagcgcc aacaaggctg gcgcgcggaa ctcagttaca gcaaaacgtt
     1981 taccaccggc actaacctgg tactggcggc ttatcgttat tcaaccaacg gctttcgcga
     2041 tcttcaggac gtgctcggcg tacgccggga agcaaaaacg gggattgatt actactccga
     2101 cacgctgcat caacgcaatc gcctgtccgc gacggtaagc cagccgttag gacggcttgg
     2161 cacgcttaac ctcagcgcca gcaccgcaga ctactacaat aaccaatcgc gtataacaca
     2221 gctacaaatg gggtatagca accagtggcg gaatataagc tacggggtga atatcgcgcg
     2281 acagcgcacc acctgggatt acgatcgctt ttatcacggc gttaacgaac cactggacgt
     2341 gagtagccga caaaaatata ccgaaaccac aatgtcgttt aatgtctcta taccgctgga
     2401 ttggggcgaa aacagaacgt ctgtcgctat gaattataac cagtccagtc aaagccgttc
     2461 ctcaaccgta tccatgaccg gcagtagcgg tgaaaacagc gacctgtcat ggtcggttta
     2521 tggcggctac gagcgttatc gcaatagtaa tagcgatagc agcgcgccaa cgacgtttgg
     2581 cggtaatcta caacaaaaca cccagtttgg cgcacttcgc gccaactatg accagggtga
     2641 taactatcgt caggaaggac tgggcgcgtc cggcaccctg gtactccacc ctggcggtct
     2701 gacggctggc ccctatacca gcgatacctt tgcgcttatt catgccgatg gcgcgcaggg
     2761 cgcgatcgta caaaatggcc agggcgctgt ggttgatcgc tttggttacg ccattctgcc
     2821 ttcgttatct ccttaccgca tcaataacgt tacgctcgac acccgtaaga tgcgcagcga
     2881 tgccgaactg acgggaggaa gtcagcagat tgtgccctat gccggcgcca tcgcgcgtgt
     2941 caatttcgcc actatcagcg gcaaagcggt gctgatctcc gtgaagatgc cggatggcgg
     3001 cataccgcca atgggcgctg atgttttcaa cggtgaaggc acaaacatcg gcatggtcgg
     3061 ccagagtggg cagatttatg cccgaatcgc ccatccgtcg ggttctctac tggtgcgctg
     3121 gggaacaggg gcaaaccagc gttgccgggt tgcctaccaa ctcgatcttc acaccaaaga
     3181 accgtttctc tatctgaaca aaatctgcga gaaggaatag cacaatgctt tttagtttcc
     3241 gaacgctctt gtttatcacc agtctgttcg tcagcgccgg aacatggtcg tcatgtataa
     3301 aagtcaccga taagagcgcg ctctctgacg cggcgataaa agcgggctac acggcgcaaa
     3361 actggatcgg cgcacttgac acgaatacgg gtaatatcgg tttgccaacg gtgattagca
     3421 tcagtaatag tgaaacattt caaccctccg gcacactatt ggccagtggg atcggtaact
     3481 tcctgacggc cgccaccgga acgccctatt ccagtaaaca ggtactttac cgctgcgatt
     3541 ccgccgatgc cgggaagctc tatgagatgt attcgacaaa tggcgatagc gcttttgcgg
     3601 gggcattttt tactcccgaa gtagaaggcg cctattatga tgtggagcgt aatgtcgctg
     3661 tccgtatgac aaacctcagt accggcgaat attacagccg cttctggaaa gaacgccaac
     3721 ttaccgcaga cagttggttt caggatgaca aatatattta tattcctgcc agcgcgttta
     3781 gcaacgtgtt atatgagatg tttaaaattg actcaagaaa atattttgcc taccagaatc
     3841 caatggaccg agatacctgg acgcagcctc ggggttatat cgcgtttaaa ggcccaggct
     3901 tgattaccga gcggatcaaa gcgggactgg atcatgccag cgattattat ggctggccca
     3961 gctattggcc cggggcatgg agtacatata atagcgtcac ctatgttcgc ggcgcgttat
     4021 gtaaaatcac agattatcct gcgatcgtga aaattccccc tgtcgccgtc ggcatattag
     4081 ccgccggagg caatagtcag gcgcctttcc acgtcagcct agaatgtgag tccggtgccg
     4141 tgtccagtgc cctcccgtcc accagcgccg ctaatgtcgc aatggggttt gtcgttaatc
     4201 aacccaccgc cgtggcggcg gcgcgtcgcc tggggctaac cacatctgca ggcggtctgt
     4261 cgtggctact ggacacccat tatggcgaac ctggcgtagc ttccggagtg ggtatccgca
     4321 tctataacga tgccggtacg ccgattaacc tgttacccga tcggatcaag acaggcactg
     4381 gcaacgcccg aggctggtat ggctataaag atttaaccac acgggtatca tccggttcag
     4441 tagaaaccta tagcggtgat tttactgcct cgcttgaggc gctcggcgga caaacagtaa
     4501 cggcaggaag cgtgaatgcg caattacagg cagtggttag ttttcagtaa agtcatatta
     4561 acgctacttg ggttgacggg atggtatggc ccggcacaag ctgccgttaa tattgacaga
     4621 acccgaatta tttttgcttc agatgaggtc gctcaatcgt tgacattatc caacgataat
     4681 acaacgccga tgctgttaca ggtatggacc gacgccggaa acattgacgc ctctccggat
     4741 aacagcaaaa cgccgctggt ggcgctgccg ccggtattta aaatgcagcc aggagaactg
     4801 agaacgcttc gcctgctcct gagttcccgc cagcagctgg caacggaccg ggagagtctc
     4861 ttctggctaa acatttatca gataccgcca gtcacccagg acattaaaaa ccacccgcga
     4921 aaactggtgt taccgcttcg tttgaggcta aaaattttaa ttcgcccgac tgggctaaaa
     4981 gcgcccacgg aagcggagga gaaaaaatta cgctttattg ctaaagagaa tactatacgg
     5041 atagttaacc ccacctcgtg gtatatgagt ttaacgttaa cgatggataa caagaaaagt
     5101 atcggcgata tcatggttgc gccgaaaaca gcacttgatg tgccgctaac acgctcgcca
     5161 acgccgggag catcgataaa ttatgcagta atcaatgatt ccgggaactg gcgacaatat
     5221 accgccatac tggaaaaata tattagtaag agtaatttta ttcctgagtt ttgatgggaa
     5281 atattcaggg atacgatcgt atccct
//
LOCUS       DAJVSD010000277         5261 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.277, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000277 DAJVSD010000000
VERSION     DAJVSD010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5261)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5261)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5261
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.277"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(24..1307)
                     /gene="aroA"
                     /locus_tag="OQP62_004011"
     CDS             complement(24..1307)
                     /gene="aroA"
                     /locus_tag="OQP62_004011"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HCS1723422.1"
                     /translation="MESLTLQPIARVDGAINLPGSKSVSNRALLLAALACGKTVLTNL
                     LDSDDVRHMLNALSALGINYTLSADRTRCDITGNGGPLRASGTLELFLGNAGTAMRPL
                     AAALCLGQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFIGG
                     DIEVDGSVSSQFLTALLMTAPLAPEDTIIRVKGELVSKPYIDITLNLMKTFGVEIANH
                     HYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRF
                     ADVLEKMGATITWGDDFIACTRGELHAIDMDMNHIPDAAMTIATTALFAKGTTTLRNI
                     YNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPAKLQHADIGTYNDHRMAMCFS
                     LVALSDTPVTILDPKCTAKTFPDYFEQLARMSTPA"
     gene            complement(1378..2466)
                     /gene="serC"
                     /locus_tag="OQP62_004012"
     CDS             complement(1378..2466)
                     /gene="serC"
                     /locus_tag="OQP62_004012"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HCS1723423.1"
                     /translation="MAQVFNFSSGPAMLPAEVLKLAQQELRDWHGLGTSVMEISHRGK
                     EFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYW
                     AASAIKEAKKYCAPQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAID
                     ETPDFGPEVVVTADFSSTILSAPLDVSRYGVIYAGAQKNIGPAGLTLVIVREDLLGKA
                     HESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELL
                     YGVIDNSDFYRNDVAQANRSRMNVPFQLADNALDKVFLEESFAAGLHALKGHRVVGGM
                     RASIYNAMPIEGVKALTDFMIDFERRHG"
     gene            complement(2652..3344)
                     /locus_tag="OQP62_004013"
     CDS             complement(2652..3344)
                     /locus_tag="OQP62_004013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF421 domain-containing protein"
                     /protein_id="HCS1723424.1"
                     /translation="MKAFDLQRMALDNVSVAFLGEVALRSFYTFVLVFLFLKVTGRRG
                     VRQMSLFEVLIILTLGSAAGDVAFYDDVPMLPVLVVFITLALLYRLVMWLMAHSEKLE
                     DLLEGKSVVIVEDGELAWEKLQRSNMTEFEFFMELRLNGVEQLGQVRLAILETNGQIS
                     VYFFENKDVKPGLSILPEHCTPRFIVAPEAGDYACVRCSEVIRMNVGEKQLCPRCANP
                     EWTKASRAKRVV"
     gene            3481..5241
                     /locus_tag="OQP62_004014"
     CDS             3481..5241
                     /locus_tag="OQP62_004014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     accessory protein YcaO"
                     /protein_id="HCS1723425.1"
                     /translation="MTQTFIPGKDAALEDSIARFQQKLLDLGFHIEEASWLNPVPNVW
                     SVHIRDKECALCFTNGKGATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVH
                     YPNEKWFSLTENDDVPEGLLDARLRAFYDPENELTGSQLIDLQSGNEERGVCGLPFTR
                     QSDNQTVYIPMNIIGNLYVSNGMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPE
                     IPAEVMARYPAVMESIATLEAEGFPIFAYDGSLGGKYPVICVVLFNPANGTCFASFGA
                     HPDFGVALERTVTELLQGRGLKDLDVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDL
                     FKQDADYPFTDWSFSGTTEEEFATLMAIFAAEDKEVYIADYEHLGVYACRIIVPGMSD
                     IYPAEDLWLANNNMGSHLREILLSLPGSAWNKEDYLNLIEQLDEEGFDDFTRVRELLG
                     LATGADNGWYTLRVGELKAMLALAGGDLEQALIWTEWTMEFNSSVFSPVRANYYRCLQ
                     TLLLLSQEDARQPLQYLNAFIKMYGAEAVEAASTALSGEAAFYGLPAVDHDLQAFPAH
                     QSLLKAYDKLQRAKAAYWSK"
BASE COUNT         1287 a         1440 c         1310 g         1224 t
ORIGIN      
        1 cgtcgactgg cgcaacagaa gaattaggca ggcgtactca tccgcgccag ttgttcgaaa
       61 taatcaggga acgtttttgc ggtacattta gggtccagga tcgtgactgg cgtatcggac
      121 agtgcgacca gtgagaaaca catcgccata cggtggtcgt tgtacgtgcc aatatccgcg
      181 tgttggagct tcgccggcgg cgtgatacga atatagtcgt gcccttcttc gacttcagcg
      241 cccactttac gtagctcggt cgccatcgcg aacaggcgat cggtttcttt cactcgccag
      301 ttataaatat tgcgcaacgt cgtggttcct ttcgcaaaca acgccgtggt ggcaatcgtc
      361 atcgccgcat ccggaatatg gttcatatcc atatctatgg cgtgcaattc gccgcgcgtg
      421 caggcaataa aatcatcgcc ccaggtaatg gtcgcgccca ttttctccag cacatcggca
      481 aaacgaatat cgccctgcat acttttgcgg ccaatcccgg tcacttttac cgtgccgcct
      541 tttatcgccc cagcggcgag aaaataggac gctgacgagg catcgccctc gaccagatag
      601 cgacctggag agtgatactg ttgaccgccc ttcacgacaa attgttggta gtgatggttc
      661 gctatctcca cgccaaaggt tttcattaaa tttagcgtga tatcgatgta aggttttgat
      721 accagttcgc ctttaacgcg aataattgtg tcttcaggcg ccagcggcgc cgtcatcagc
      781 agagcggtca ggaactggct ggaaacgcta ccatcaacct caatgtcgcc gccgataaaa
      841 ccgccgcgca gacgcagggg cggatagttt tcctgctcca ggtaatcaat attcgcccca
      901 ccctgacgca gcgaatcgac cagatggcct atcggacgct ctttcatacg cggttcgccg
      961 gttaacacta tctcattttg ccccagacat agcgctgccg ctaacggacg catcgcggtt
     1021 ccggcattac cgagaaacag ttccagagtg cctgacgcgc gtaatgggcc gccattaccc
     1081 gtgatatcac agcgggtgcg atcggcagaa agggtgtaat tgatccccaa cgcgctcagg
     1141 gcattgagca tatggcggac gtcatcgcta tccagcagat tcgtcagaac ggttttacca
     1201 caagctaaag ccgccaggag caaagcacgg tttgaaacac ttttggagcc aggtaaatta
     1261 atggcgccat cgacccgcgc gatgggttgt aacgtcaggg attccatgaa actcaactct
     1321 caaaaaacag aaataaaaac cccacagact ggccgtgggg atgaaaaaag aaacgtatta
     1381 gccgtggcgg cgctcaaaat cgatcatgaa atcggtcagc gctttcaccc cttcaatcgg
     1441 catggcgtta tagatagagg cgcgcatacc gccaacaaca cggtgccctt ttaaggcgtg
     1501 cagaccagcg gcgaaagact cttccagaaa gaccttgtcc agcgcattgt ccgctaactg
     1561 gaacggaaca ttcatccgcg aacggttggc ctgtgcgaca tcgttacggt agaaatcgct
     1621 gttatcaatc acaccataca gcaactccgc tttttgctga ttgattttgt gcatcgccgc
     1681 cacgccgccc tgcgctttca accatttgaa caccagaccg gaaagatacc aggcgaaagt
     1741 cggcggtgta ttaaacatcg agtcgttatc attcaggacg gtgtagtcga ggatggacgg
     1801 gcagctctca tgcgccttgc ctaacagatc ctcccggacg ataaccagcg tcagtcctgc
     1861 cggaccgata ttcttctgcg cgccagcata aattacgcca tagcgagaga cgtccagcgg
     1921 cgcagacagg atggtagaag aaaaatccgc cgtgacgacc acttccgggc caaaatccgg
     1981 cgtttcatcg atggcgatgc cgtcaatggt ctcattcggg caatagtgta aataagcggc
     2041 gttatcggaa agctgccact cgcgcatcgg ttttacggca cgtttgccgt caacggtgat
     2101 tttggcgtcg ataatctgcg gcgcacagta ttttttggct tctttgatgg cgctcgccgc
     2161 ccagtaaccg gcatcgacat aatccgccgt ggttttatcg cccagcagat tgagcggcac
     2221 gccagcaaac tgcccgcgac cgccgccgtg acaaaataaa actttatagt tggaggggat
     2281 attaaggaga tcgcgaaaat cctgctccgc ctcttcagcg acctggataa actctttgcc
     2341 tcgatggcta atttccatta ccgacgtacc aagaccgtgc cagtcacgca gttcctgttg
     2401 cgccagttta agtacttccg ccggtagcat cgccggacct gaactaaaat taaagacctg
     2461 agccatttcc cctcaccacg ctgcattgtt tcctgcctga cagacatcag gcaaacgtta
     2521 ttcatgtgaa tatcggtttt atcattcagt gacacgcgcc gcaatgggta aaacaatgcg
     2581 aggagaaaat gcggcatgcg tcacacaaca gaatcttccg gattaaccgt ataaatccga
     2641 tattttcgct gttaaacaac gcgtttagcc cggcttgcct tcgtccattc tggatttgcg
     2701 cagcgcggac ataattgctt ctccccgaca ttcatgcgta tcacttcact gcaacgtacg
     2761 caggcatagt cgccagcctc cggcgccacg ataaagcgtg gcgtacagtg ctcaggaaga
     2821 atgcttaacc ccggcttaac gtctttattt tcaaagaaat agacgctgat ttgtccgttt
     2881 gtctccagga tggccagtct gacctgcccc agttgctcaa cgccattcaa gcgaagctcc
     2941 ataaaaaatt caaactccgt catgttcgag cgctgcagtt tttcccacgc cagttcgccg
     3001 tcttcaacaa tgaccaccga cttgccttcc agcagatctt ccaacttttc actatgcgcc
     3061 atcagccaca tgactaggcg atagagcagc gccagggtga tgaataccac cagaacaggg
     3121 agcatcggaa cgtcatcata aaacgcgacg tcgcctgccg ccgatcccaa tgtcaaaatg
     3181 atcagcactt caaaaagcga catttgccgt acgccgcgtc gtcctgtcac ctttaagaaa
     3241 agaaacacca gaacaaaggt gtaaaagcta cgtagcgcca cttcccccaa aaacgctacc
     3301 gacacgttat ccagcgccat tcgttgcaaa tcaaatgctt tcatttttta tgctcttcct
     3361 gtgaattcca gtgtaaaagc atagccaata cttttatttc cgccgacgtc ccggcgagat
     3421 agcgcccgtc acataaaacc cgtatcattg cgcgctttcc gtacgacaaa agtgattttc
     3481 atgacgcaaa catttattcc cggcaaagac gccgcgctgg aagactccat cgcccgcttc
     3541 cagcaaaagt tactcgacct cggctttcac atcgaagagg cctcctggct gaacccggtg
     3601 ccaaacgtct ggtcagtgca tattcgcgat aaagagtgcg cgttatgctt taccaacgga
     3661 aaaggcgcga ccaaaaaagc ggcgctggcc tcggcgctgg gcgaatactt cgagcgtctg
     3721 tcaaccaact acttttttgc tgatttctgg cttggcgaaa cgatcgccaa cgggccattc
     3781 gtgcattatc cgaatgaaaa gtggttctcg ctgactgaaa atgacgacgt accggaaggc
     3841 ttgcttgatg cccgtctgcg cgcgttttac gatccggaaa atgaactcac cggaagccag
     3901 ttaattgatc ttcagtccgg caatgaagaa cgcggcgtct gcggcctgcc atttacccgt
     3961 cagtccgata accagaccgt gtatattccg atgaatatta tcggcaacct gtacgtctct
     4021 aacggaatgt ccgccggcaa tacgcgtaat gaagcccgcg ttcagggact gtcggaagtc
     4081 ttcgagcgtt atgtgaaaaa tcgcatcatt gcggaaagta tcagtctgcc ggagattccc
     4141 gcagaggtga tggcgcgtta tccggcggta atggagtcaa tcgccacgct ggaagccgag
     4201 ggtttcccga ttttcgccta tgacggctcg ctgggcggta agtatccggt tatctgcgtc
     4261 gtgctgttca acccggctaa cggtacctgc tttgcttctt ttggcgccca tcctgacttt
     4321 ggcgttgcgc tggaacgtac agtgaccgag ctactccagg gacgcggtct gaaagatctt
     4381 gatgtcttca cgccgccaac gttcgatgat gaagaagtcg cggagcacac taatctggag
     4441 acccacttca tcgactccag cggcctgatt tcctgggatc tgttcaaaca ggacgccgat
     4501 tacccgttca cggactggag tttctccggc actaccgaag aagaattcgc cacgctgatg
     4561 gccatcttcg ctgctgaaga taaagaagtt tacattgccg attacgagca tctcggcgta
     4621 tacgcctgtc gtattatcgt accgggaatg tctgatattt atcctgccga agatctgtgg
     4681 ctggccaaca acaatatggg tagccatctt cgtgagattc tgctttcgct gcccggtagc
     4741 gcctggaata aagaagacta tctcaatctg attgaacaat tggatgaaga aggttttgac
     4801 gatttcaccc gcgtgcgtga actgttgggt ctggcgaccg gagcggacaa tggttggtat
     4861 acactgcgcg tcggcgaatt aaaagcaatg ctagcgttag cgggcggcga tttggagcag
     4921 gcgctaatct ggacagaatg gacgatggag ttcaattcgt cggtctttag tccggtacgc
     4981 gcaaactatt accgttgcct gcaaacgctg ctgctcctgt cgcaagaaga tgcgcgtcag
     5041 ccgctgcaat atctcaatgc ttttataaaa atgtatggcg cagaggctgt agaagccgcc
     5101 agcaccgcgc ttagcggtga agcggctttt tatggactac cggctgtcga ccacgatcta
     5161 caagcgttcc cggcgcatca gtccttgtta aaagcgtatg ataaattaca gcgcgcgaaa
     5221 gcggcatact ggtcaaaata aggccatatg agtgacttag g
//
LOCUS       DAJVSD010000278         5141 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.278, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000278 DAJVSD010000000
VERSION     DAJVSD010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5141)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5141)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5141
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.278"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..574
                     /locus_tag="OQP62_004015"
     CDS             <1..574
                     /locus_tag="OQP62_004015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723426.1"
                     /translation="ESSAVTAFTGISNVLNIVPFPYSLRQNGFVLSGFNVRILRNGLG
                     KVDIVPLQVNFGHIYTTYEPSQTRQANFTVIARQVLRPAMGQEFAIPLAITFGKGALT
                     QDTGQTLNLVSLDGPNKGQPNGLRLSIKDDKGKEITFDKQEVLGDITITGTVTGNVSK
                     VYTAVITPTLGGSVKTGKFSAAILVTVTYN"
     gene            719..1231
                     /locus_tag="OQP62_004016"
     CDS             719..1231
                     /locus_tag="OQP62_004016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001727965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiF/GrlA family transcriptional regulator"
                     /protein_id="HCS1723427.1"
                     /translation="MCPDNTHAKKQYLIPGNDIHYPGQTNHDACFIPVSVRQYAGEPL
                     YIIVAHWCLLQQNWVQRNQIAEAFHITARRASYLIAYLRSKTSRVVSICRHQTLPNKA
                     RRYEIYVIRVLDSPTPSTRREKAGPPPVSKRRVGNGDRSMANELWNRLCSNRNAGKIL
                     KKREDEDDRT"
     gene            1218..1976
                     /locus_tag="OQP62_004017"
     CDS             1218..1976
                     /locus_tag="OQP62_004017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1723428.1"
                     /translation="MTEHNRIPARQIIVYGDCWPVTIAVAHLVRRFLPGCNCETAYRL
                     PVLLQQLRRKPEAILILCLRPREHLFLFYSLRQILPDYPVMIISDELFFSDRVVLKVY
                     GGIPALLEQELAEILIRWRRDEQWAGGARLRRTGGLDAFLLSPDPVTGFLEVPPIFNN
                     PKRLMNYMDQLMHREILACGVSLAQLRLLQEVYRGRGRLSALCGRLNTQEKQIWQDKY
                     RLLVKLGMRNRLRELLFGTRFCKSLQRTPFIAPQ"
     gene            complement(2186..3052)
                     /locus_tag="OQP62_004018"
                     /pseudo
     CDS             complement(2186..3052)
                     /locus_tag="OQP62_004018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461941.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nickel/cobalt efflux protein RcnA"
     gene            3174..3446
                     /gene="rcnR"
                     /locus_tag="OQP62_004019"
     CDS             3174..3446
                     /gene="rcnR"
                     /locus_tag="OQP62_004019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni(II)/Co(II)-binding transcriptional repressor
                     RcnR"
                     /protein_id="HCS1723429.1"
                     /translation="MSHTIRDKQKLKARTSKIQGQVIALKKMLDEPHECAAVLQQIAA
                     IRGAVNGLMREVIKGHLTEHIVHQSDEARREEDLDVILKVLDSYIK"
     gene            complement(3477..4706)
                     /locus_tag="OQP62_004020"
     CDS             complement(3477..4706)
                     /locus_tag="OQP62_004020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCS1723430.1"
                     /translation="MSKIWSKDETLWSFALYGTAVGAGTLFLPIQLGSAGAIVLFITA
                     LVAWPLTYWPHKALCQFILSSKTSAGEGITGAVTHYYGKKIGSIITTLYFIAFFVVVL
                     IYAVAITNSLTEQLAKHIQIDIRIRMAVSFGVVLILNMIFLMGRHATLRVMGFLVFPL
                     IAYFLFLSLYLTGSWQPSLLTGQMSLDSHTLHQVWISIPVMVFAFSHTPIISTFAIDR
                     RENFGDQAMDKCKKIMKVAYLIICLSVLFFVFSCLLSIPPSYIEDARNEGVTILSALS
                     MMPNAPAWLSISGIIVAVVAMSKSFLGTYFGVIEGATEMVRTTLQQVGVKKSRAFNRA
                     LSIMLVSGITFIICCINPNAISMIYAISGPLIAMILFIMPTLSTYLIPALKPYRSIGN
                     FITLVVGLLCVSVMFFG"
     gene            complement(4848..>5141)
                     /locus_tag="OQP62_004021"
     CDS             complement(4848..>5141)
                     /locus_tag="OQP62_004021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017465480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PACE efflux transporter"
                     /protein_id="HCS1723431.1"
                     /translation="AMIWNIIYNALFDRLWPAHQVRRTAKVRALHALGFESGFIVIGV
                     SIVAWVLNVSLLQAFTLEIGFFLFFLPYTMLYNWAYDVLRQRIVTRRQQRVSA"
BASE COUNT         1440 a         1193 c         1325 g         1183 t
ORIGIN      
        1 agagagtagt gcagttacag cttttacggg gataagtaat gttttaaata ttgtaccttt
       61 tccttattct ttgagacaaa acggatttgt tttatctggt tttaatgtga gaattctcag
      121 aaacggattg ggtaaagttg acattgttcc attacaggtc aactttgggc atatttatac
      181 gacttatgaa ccttcacaga ccagacaggc aaattttaca gtgatcgcca ggcaggtttt
      241 acgaccggct atgggacagg aattcgcgat cccgctggcc atcaccttcg ggaaaggtgc
      301 gctgacacag gataccgggc aaactctgaa tcttgtcagt ctggatggcc ccaacaaagg
      361 tcagcctaat ggactccggc tttcaataaa agatgataaa ggaaaagaga ttacttttga
      421 taaacaagaa gtactggggg atattactat tacaggaact gtcaccggta atgtgtcgaa
      481 ggtatatact gcagtaataa ccccgaccct ggggggaagt gtaaagacag gaaagttttc
      541 tgctgcaata ctcgttactg ttacctataa ctaatcgggg gtgacagata ataaaaataa
      601 aagagctgac tgagttatcg gggaactaat cccgaataaa cccacattaa taataaatac
      661 tatttaagag ctgttcttca cctccggaaa attatttacc cagttatgga gaggttttat
      721 gtgccctgat aatacacacg caaaaaagca gtaccttatc ccaggtaacg atattcatta
      781 tcccggacag accaaccatg atgcctgttt tattccggta agtgtccgcc agtatgccgg
      841 cgagcccctg tatatcatcg tggcacactg gtgcctgttg cagcagaact gggttcagcg
      901 taaccagata gcagaggcgt ttcacatcac ggccagacgg gccagctacc tgattgccta
      961 tctgcgaagc aaaacatcgc gggtggtcag catctgccgt caccagaccc tgcccaataa
     1021 agcacgacgc tatgagattt atgttatccg ggttcttgac agtcccaccc cgtccacgcg
     1081 ccgtgaaaaa gccggaccgc cgccggtatc aaaacgccgg gtcggtaatg gtgacaggtc
     1141 gatggcaaat gaactgtgga accggctgtg cagtaacaga aatgcgggaa agatcctgaa
     1201 aaagagggag gatgaggatg acagaacata accggatacc ggcccggcag attatcgttt
     1261 acggtgactg ctggccggtg acgatcgccg tggcacacct ggtccggaga tttctgccgg
     1321 gctgcaactg tgaaaccgca tacaggctgc ctgttctgtt gcagcaatta cgtcggaaac
     1381 cggaggccat actgatactg tgtctgcgtc cccgtgaaca tctctttttg ttctattccc
     1441 tgaggcagat actgccggac tacccggtta tgattatcag cgatgagctg tttttcagcg
     1501 accgggtggt actgaaggta tacggcggca tcccggcgct gctggagcag gaactggcgg
     1561 agatacttat tcggtggcgg cgggatgaac agtgggccgg gggcgcacgc ctgcgcagga
     1621 caggagggct ggacgccttt ttgttatctc cggatccggt gacgggcttt ctggaagtgc
     1681 caccgatatt taacaatccg aagcggttga tgaactatat ggaccagttg atgcaccggg
     1741 agatactggc atgcggagtg agcctggccc agttacgctt gcttcaggaa gtttaccgtg
     1801 gacggggaag gttatcagcg ctgtgtggaa ggctgaacac gcaggagaag caaatctggc
     1861 aggacaaata ccggttactg gtgaagctgg gaatgcggaa ccgattacgg gaactgctgt
     1921 ttggtacccg gttttgtaaa tcactgcagc gaactccgtt tatcgctccg caataacccg
     1981 cctccggcga ccctatccag aaacactgac acaccggcta aacccggtgg cggtggggta
     2041 tgttttgcct gtggtgtagt ggagtaaaat acagaattca ggcgggacgc tgaatgtatg
     2101 gcctttcata ccgtttgata agtaaaaacg cttctggaat gaaacccgaa gtgaatgata
     2161 cggcctgagc agaagcgtta catatttact gcatgatccc ggtatagcca tgaattccca
     2221 tatacacgcc gaccagacca atcagaatgc tcgaaaaata gggcgcccgc cgggcaagcg
     2281 tcgaaaaacc actccagcgc tttgctgcct gttgaacgct tatcgccgcg ccaacgccta
     2341 ccgtcaccag cgttaatgcc aggccaagac taaagctcag caccatcgtg gcacccagcg
     2401 taaacgcttt aagctggata caaatcagta aaacggtgat cgcagccgga caggggataa
     2461 gccctccggt caggccgaac agcaggatct gtccattatt cactgtttga ccatcaaaac
     2521 ggcgttgaat atcggcagca tgggcgcgtt catgggcatc ctgatacgct tttgacgttg
     2581 cgccttccgg atgtatgtga ccatgatggt catggtcatg gtcatggtca tggtcatggt
     2641 catggtcatg gtcatggtcg taatggtggt cgtgatggtg gtcgtgatgg tggtttcccg
     2701 ccagccactg ctgctcgcct cgtcatgtcc gccagaacat ccagcacgcg gtgctcagaa
     2761 taatgatcgc agaaattaac tgcagccatg gttccactga ttgtgcggtg aatgcccggc
     2821 taagatacat cccacccagc gcgattaacc agacgatcgc ggtatgagaa agcgttgctg
     2881 ccagaccgag catgacagcc tgtttaaccg tacctttaat ggcaatgata aaagccgcca
     2941 tcatggtttt ggagtgccct ggttcaagcc cgtgcaaaat acctaataaa atggcgctgg
     3001 gaatgaagaa ccagccgttt ccttgctgaa gaagtgtcga aaattcaccc atgagaatga
     3061 ttcttagttg ttttatgtgg gcgtcattct actccccccc agtatggaat actacccccc
     3121 agtagcatcg taatgctata atttgtattc gttaatgtta gtgaggtgtt gtaatgtcac
     3181 ataccatccg ggacaaacaa aagcttaaag ccagaaccag caagattcag gggcaggtga
     3241 tagcgctaaa aaaaatgctg gatgaaccgc atgaatgcgc ggccgtgtta caacagatcg
     3301 cggcgattcg cggcgcggta aatggcttaa tgcgcgaggt gattaaaggg catctgaccg
     3361 agcatatcgt tcatcagagt gatgaagcca gacgtgaaga agatctggac gtaatattaa
     3421 aggtgctgga ttcttatata aaatagccgg gagttatatc ccggctatct tttactttag
     3481 ccgaaaaaca tcaccgatac gcaaagtaaa ccgacgacca acgtaatgaa attacctatt
     3541 gaacggtagg gtttcaatgc cggtatcagg tacgttgaca acgtgggcat aataaacaga
     3601 atcatcgcaa tgagcgggcc gctaatggca taaatcatag agatggcatt cgggttaata
     3661 cagcaaataa taaacgtaat cccggaaacc agcatgatag acagcgcgcg attgaacgcc
     3721 cggctttttt tcacgccaac ctgctgtagg gtggttctta ccatttcggt tgcgccctcg
     3781 atgacgccga aataggtgcc gaggaaagat ttcgacatgg ccacgacggc aacgataata
     3841 ccggaaatag agagccaggc cggcgcattg ggcatcatcg agagcgcgga aaggatggta
     3901 acgccttcgt tgcgcgcgtc ttcaatgtat gacggcggaa tggagagcag gcagctaaag
     3961 acaaagaaca gcacactcag gcagataatc aggtaggcga ccttcatgat ctttttgcat
     4021 ttatccatgg cctgatcgcc aaaattttcc cgtctgtcga tggcaaacgt cgaaataatg
     4081 ggcgtatggc taaaagcaaa aaccatcacc ggaatagaaa tccatacctg gtgcaacgtg
     4141 tgactatcca aagacatctg cccggtcagt aacgagggtt gccagcttcc ggttaagtag
     4201 agcgaaagga acaagaagta agcgataagt ggaaagacta aaaagcccat tacgcgaaga
     4261 gtggcatgtc ttcccattaa gaaaatcata ttcaggataa gtactacgcc gaagctaact
     4321 gccatccgga tgcgaatatc tatctgaata tgcttcgcta attgctctgt cagggaattg
     4381 gtaatcgcca cagcataaat taataccacg acaaaaaacg caatgaaata aagcgtggta
     4441 ataatactgc cgattttctt gccgtaataa tgagtaacgg cgccagtaat tccctcacct
     4501 gcagaagtct ttgaggaaag aataaactga cacagcgcct tatgcggcca gtatgttaga
     4561 ggccaggcga ccagcgcggt aataaatagc acgattgcgc ctgccgatcc caactggatg
     4621 ggaaggaaaa gagtgcctgc gcctacagcc gttccgtata atgcaaaact ccagagagtc
     4681 tcatcttttg accaaatttt agacattatt tgaatttatc aactataaaa cacacaaaaa
     4741 gaagcgcaat ttaccataaa tagcgtcagt tgggggcgtt ttaagcagat ggatgtcgtg
     4801 gaggaggagg gccgggagcg ttgcgatccc ggcaaaaaag agcaatatca tgcactaacg
     4861 cgctgttggc ggcgggtcac tattcgttgg cgtaaaacat cgtatgccca gttgtacagc
     4921 atcgtgtacg gcaaaaagaa caggaagaaa ccaatttcca gggtgaatgc ttgtagcagg
     4981 ctgacattca gtacccaggc gacaatactc acgccaatga caataaaccc actttcaaat
     5041 cctaacgcat ggagtgcgcg cactttggcg gttcgtctca cctgatgcgc aggccacagt
     5101 cgatcaaaca gagcgttata aatgatattc cagatcatgg c
//
LOCUS       DAJVSD010000279         5044 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.279, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000279 DAJVSD010000000
VERSION     DAJVSD010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5044)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5044)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5044
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.279"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            32..1081
                     /gene="allD"
                     /locus_tag="OQP62_004022"
     CDS             32..1081
                     /gene="allD"
                     /locus_tag="OQP62_004022"
                     /EC_number="1.1.1.154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ureidoglycolate dehydrogenase"
                     /protein_id="HCS1723432.1"
                     /translation="MKISRETLHQLIENKLYKAGLKREHAAIVADVLVYADARGIHSH
                     GAVRVEYYAERISKGGTNREPTFRIENTGPCTAILHADNAAGQVAAKMGMEHAIEIAK
                     KNGVAVVGISRMGHSGAISYFVRQAAREGLIGLSICQSDPMVVPFGGADIYYGTNPLA
                     FAAPSEGDDIITFDMATTVQAWGKVLDARSRNESIPESWAVDKNGAPTHDPFAVNALL
                     PAAGPKGYGLMMMIDILSGILLGLPFGRQVSSMYEDLHAGRNLGQLHLVINPAFFSSC
                     ELFRKHISQTMQELNSVKPAPGFKQVYYPGQDQDIKQKNADMNGIDIVDDIYQYLISD
                     ALYLKSYETKNPFAQ"
     gene            1103..2338
                     /gene="allC"
                     /locus_tag="OQP62_004023"
     CDS             1103..2338
                     /gene="allC"
                     /locus_tag="OQP62_004023"
                     /EC_number="3.5.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="allantoate deiminase"
                     /protein_id="HCS1723433.1"
                     /translation="MIKHFRHAIEETLPWLSSIGADPTGGMTRLLYSPEWLETQQQFK
                     KRMAESGLETRFDDVGNLYGRLCGTQFPEQVILSGSHIDTVVNGGNLDGQFGALAAWL
                     ALDWLKATYGAPLRTVEVVSMAEEEGSRFPYVFWGSKNIFGLANPEEVRYIQDAKGTG
                     VVDAMQACGFTLPAAPLAARTDIRAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTV
                     TLNGESNHAGTTPMGYRRDTVHAFSRICSQSIEKAKQHGDPLVLTFGKVEPQPNTVNV
                     VPGKTTFTIDCRHTDAAVLREFTEQLENNMRAICDEMDISIDIDLWMDEAPVPMNAEL
                     VAALTRLCETEQLNYRIMHSGAGHDAQIFAPRVPTCMIFVPSINGISHNPAERTNIND
                     LAEGVKTLALMLHQLAWQK"
     gene            2349..3134
                     /gene="allE"
                     /locus_tag="OQP62_004024"
     CDS             2349..3134
                     /gene="allE"
                     /locus_tag="OQP62_004024"
                     /EC_number="3.5.3.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(S)-ureidoglycine aminohydrolase"
                     /protein_id="HCS1723434.1"
                     /translation="MGYLNNVTGYRDDLLANRAIVKHGNYALLTPDGLVKNIIPGFEN
                     CDVTILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVIAGNIEAKAEGKTFS
                     LTQGGYLYCPPGEMMTFSNAQTEDSQLFLYKRRYTPVEGHAPWLVSGNASQLERIHYE
                     GMEDVILLDFLPKELGFDMNMHILSFEPGASHGYIETHVQEHGAYILSGQGVYNLDNN
                     WVPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVMI"
     gene            complement(3213..4361)
                     /gene="glxK"
                     /locus_tag="OQP62_004025"
     CDS             complement(3213..4361)
                     /gene="glxK"
                     /locus_tag="OQP62_004025"
                     /EC_number="2.7.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate 3-kinase"
                     /protein_id="HCS1723435.1"
                     /translation="MKIVIAPDSFKESLSADKCCQAIKAGFSTVFPDARYVCLPIADG
                     GEGTVDAMVAATGGKRVSVDVSGPMGEKVNGFYGLTGDGKTAIIEMAAASGLMLVAPE
                     ARNPLRASSFGTGELIRHALDAGIRHIILGIGGSATVDGGMGVAQALGVRFLDAQGTP
                     LGAEGGNLSRLASIDLQGRDPRISECRIEVACDVDNPLVGPRGAAAVFGPQKGATPEM
                     VETLENGLRNYARILHALTGRDMSQIPGGGAAGGMGIAAIVFLEAEMKPGIEIVMQAV
                     KLEEAVKEASLVITGEGRIDSQTAGGKAPIGVASVAKRHHVPVIGIAGVLGDGVEVVH
                     RHGIDAVFSILPRLAPLPEVLANGEQNLYHSACNIARVIKLGQDIGTR"
     gene            complement(4384..>5044)
                     /locus_tag="OQP62_004026"
     CDS             complement(4384..>5044)
                     /locus_tag="OQP62_004026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="uracil/xanthine transporter"
                     /protein_id="HCS1723436.1"
                     /translation="PSSHLPPGELSWRWFPLGSHGTLMPGIIVTAVMTGLVNISNTYG
                     AIRGTDIFYPHQGSGSSRYRRSFMISGLMTLVTVPFAVVPFSPFVSSIGLLTQTGDSS
                     RKSFICGSALCLLVAIITPLTRLFCAIPLAISSAVMLVSYLPLLYSGLVFSQQITFTA
                     RNIYRLALPLFVGIFLMGLPPVYLQDLPLMIRPLLSNGLLVGILLAVLMENLIPWERI
                     K"
BASE COUNT         1265 a         1372 c         1252 g         1155 t
ORIGIN      
        1 tgcttcacac cgtcgttaaa aaggaagaca gatgaaaatc agtcgggaaa cactccatca
       61 gcttatcgaa aataagcttt ataaagccgg actaaaacgt gagcacgccg ccatcgtcgc
      121 cgacgtactg gtttatgcag atgccagagg tattcactca catggcgccg tacgcgttga
      181 atattatgcc gaacgaattt caaaaggcgg caccaaccgg gagccgacgt tccgcattga
      241 gaataccggt ccctgtacgg cgatactgca tgccgataat gctgccggac aggtcgcagc
      301 caaaatggga atggagcatg ctattgaaat agccaaaaaa aatggcgtcg cggttgtcgg
      361 cattagcaga atgggccata gcggcgccat ctcttatttc gtccgccagg ccgctcgcga
      421 aggcctgatt ggtctgtcta tctgtcagtc cgatcctatg gtcgtgccgt ttggcggggc
      481 ggatatttac tatggcacta atccgctggc ctttgccgcg ccgagcgaag gcgatgacat
      541 cattaccttt gatatggcca ccaccgtgca ggcctgggga aaagtcctcg atgcacggtc
      601 tcgcaatgag tccattccgg agagttgggc cgtcgataaa aacggcgcgc cgacacatga
      661 tccttttgcc gtcaatgcgt tattacccgc cgcaggcccg aaaggttacg gcctgatgat
      721 gatgatcgat attttgtccg gcattctgct ggggctgccg tttggtcgcc aggtcagttc
      781 gatgtatgaa gatttacacg ccggacgcaa tttaggacaa cttcatctgg tcattaatcc
      841 ggcgttcttt tcttcctgtg aattattccg caaacatatt agtcagacta tgcaggaact
      901 caattccgtg aagcccgctc ccggttttaa acaggtttat tatcctggac aggatcagga
      961 tattaaacag aaaaatgccg atatgaatgg tatcgatatt gttgatgata tttatcaata
     1021 tctgatttcc gatgccctct atctcaagtc atacgaaaca aaaaatccct ttgcccaata
     1081 attattgaaa caggaatttt ctatgataaa gcattttcgc cacgcgatag aagaaacatt
     1141 gccctggctc tcttccattg gagccgatcc tacgggtgga atgacgcgtt tactttattc
     1201 gcctgagtgg ctggaaacac agcagcaatt taaaaagcga atggcagaaa gcggtctgga
     1261 aacacgcttt gatgacgtcg gaaatttata tggccgcctt tgcggcacac aatttccgga
     1321 gcaggtgatt ttaagcggtt cgcatattga tacggtcgtc aacggcggca atctggacgg
     1381 acaattcggc gcgcttgccg cctggctggc gctcgactgg ctaaaagcga cctacggcgc
     1441 gccgctgcgc accgtcgaag tagtgtcaat ggcagaggaa gaaggcagcc gtttccctta
     1501 cgttttttgg ggcagcaaga acatttttgg cctggcgaat cctgaagagg tacgctatat
     1561 ccaggacgcc aaaggcacag gcgttgtcga cgctatgcag gcgtgcggat ttacccttcc
     1621 cgccgcgccg ctcgctgcgc gaaccgatat ccgcgccttt gttgaattgc atattgagca
     1681 aggctgcgtt ctggagagca acggacagtc gattggcgtc gtcaacgcca tcgtcgggca
     1741 acgtcgctac acggtgacgc tcaacggcga gtccaaccat gcaggcacaa cgccaatggg
     1801 ctatcgtcgc gatacggtgc atgccttcag tcgtatttgc agtcagtcca ttgaaaaagc
     1861 caaacagcat ggcgatcccc tggtattaac gttcggcaaa gttgagccgc agccgaatac
     1921 ggtcaatgtt gtccctggaa aaaccacatt tacaatcgat tgccggcata cggacgccgc
     1981 ggtacttcgc gaatttaccg aacagttgga aaacaatatg cgcgccatct gcgatgaaat
     2041 ggatatcagc atcgatatcg atttgtggat ggacgaagcg ccggtgccga tgaacgccga
     2101 actggtcgcg gccctcacca ggctgtgtga aaccgaacaa ctgaactatc gcataatgca
     2161 tagcggcgca ggtcatgacg cgcaaatttt cgcgccgcgc gtccctacct gtatgatttt
     2221 cgtccccagc attaatggta tcagccataa cccggcggaa cgtaccaaca ttaatgacct
     2281 tgctgaaggg gtcaaaactc tggcattaat gcttcatcaa cttgcctggc aaaaataagg
     2341 agccatcaat gggatatctg aataacgtca cgggttaccg cgatgattta ctggcgaacc
     2401 gcgccattgt gaaacacggt aactatgcgc tcttaacgcc ggacggtctg gtgaaaaata
     2461 ttattcccgg ctttgaaaac tgtgacgtca ccatcctttc gacgccgaag ctgggtgctt
     2521 ctttcgtcga ttacctggtc accttacatc agaatggcgg caaccagcag ggctttggcg
     2581 gcgaggggat tgaaactttt ctctatgtca ttgcgggaaa tattgaagct aaagcagaag
     2641 gaaaaacatt ctctttaact cagggcggct acctctattg tccaccgggg gagatgatga
     2701 cctttagtaa cgctcaaacg gaagacagcc agctattttt atataaacgc cgctatactc
     2761 ctgtcgaggg gcatgccccg tggttggttt ccggcaatgc cagccagctg gagcgtattc
     2821 attatgaagg catggaagat gttatcctgc tggatttcct gcctaaagag ctgggcttcg
     2881 atatgaatat gcatattctg tcgttcgaac cgggcgccag ccacggctat attgaaaccc
     2941 acgtccagga acatggcgct tatatccttt ccggccaggg ggtttataac ctcgacaaca
     3001 actgggtgcc ggtgaaaaaa ggcgactaca tcttcatggg cgcttattcc ctgcaggccg
     3061 gatacggtgt aggtcgtggc gaagcattca gctacatcta ctccaaagac tgtaaccgcg
     3121 acgttatgat ttaacggcgg gcagccctcc tgattatttt tatttagcta tgttggattt
     3181 tgccacggtg agaaccgtgg atttttttat acttaacgag tcccgatgtc ctggccaagt
     3241 ttgatgacgc gggcaatatt acaggcgctg tggtagagat tttgttcacc gttcgccaga
     3301 acctccggca aaggcgccag ccgcggcaaa atactgaata ctgcatcaat accgtgacga
     3361 tggaccactt ccacgccgtc gcccaatacg ccggcaatgc cgataaccgg gacatgatgc
     3421 cgtttcgcca ctgatgcgac gcctatcggc gcttttcctc ccgccgtttg cgagtcgatt
     3481 cgcccttctc cggtaatcac cagcgaggcc tcttttaccg cctcctccag cttcaccgcc
     3541 tgcataacaa tctcaatacc gggcttcatt tccgcttcca ggaagacgat agcggcaatc
     3601 cccattcctc cggccgctcc accgcccggt atttgagaca tgtcgcgtcc ggtcagggca
     3661 tgtaaaatac gggcataatt acgcaatcca ttttccagcg tctcgaccat ttcaggcgtc
     3721 gcccctttct gcggaccgaa taccgccgcc gcgccgcgtg gccccaccaa cgggttatca
     3781 acatcacagg cgacctcaat acgacactct gaaattcgcg gatcgcgccc ctgcaggtca
     3841 atgctcgcca ggcgcgataa attgccccct tcggcgccaa gcggcgttcc ctgcgcgtcc
     3901 agaaaacgca caccgagcgc ctgcgctact cccattccgc catccaccgt ggcgctgccg
     3961 ccgataccca gaataatatg gcgaattccc gcgtccaggg cgtgacgaat caattcgcct
     4021 gtgccgaaac tggatgcccg cagcggatta cgcgcctcgg gcgccaccag catcaatccg
     4081 ctcgccgccg ccatttcaat aatcgccgtt ttgccgtcgc cggtcaggcc ataaaatccg
     4141 tttacttttt cccccatcgg cccgctaacg tccacagaaa cccgtttccc gccggtcgca
     4201 gccaccatcg catccacggt tccttctcca ccatcggcga tcggtaaaca aacatagcgc
     4261 gcatccggaa atacggttga aaatcccgct ttaatagcct gacagcattt atcagcgctt
     4321 aagctctctt taaatgaatc tggcgcaatt acaatcttca ttatgtctcc ttgttttctc
     4381 acgttattta atgcgttccc acggaataag attttccata agcactgcca gtaggattcc
     4441 caccagtaat ccgttactaa gcagaggacg aatcatcagt ggaagatcct gtaaatagac
     4501 cggaggaagc cccatcaaaa aaatgccgac aaaaagcggt aacgccaggc gataaatatt
     4561 ccgcgcggta aacgtaattt gctggctaaa aaccaaaccg gaataaagta aaggtaaata
     4621 agagaccagc ataacggcgc tgctgatcgc cagtggaata gcgcaaaata agcgggttaa
     4681 cggcgttata atggcaacca gcagacacag cgcgctaccg cagataaagg atttgcgaga
     4741 actgtcgccg gtttgcgtta ataaaccaat ggaagataca aaaggcgaaa aaggcacgac
     4801 cgcaaaaggc accgtcacta acgtcatcag tccggaaatc ataaagcttc ggcgataacg
     4861 agaactgccc gacccttgat gcggataaaa gatatcggta ccgcggatag cgccgtaagt
     4921 gttgctgatg ttgactaacc ccgtcatcac cgccgtcaca ataatacccg gcatcagcgt
     4981 gccgtggctg cccagcggaa accatcgcca gcttaattca cccggcggta agtgtgacga
     5041 agga
//
LOCUS       DAJVSD010000280         5028 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.280, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000280 DAJVSD010000000
VERSION     DAJVSD010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5028)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5028)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5028
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.280"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(112..783)
                     /gene="queE"
                     /locus_tag="OQP62_004027"
     CDS             complement(112..783)
                     /gene="queE"
                     /locus_tag="OQP62_004027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HCS1723437.1"
                     /translation="MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTW
                     DKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLM
                     PLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKH
                     PVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHK
                     YLNIA"
     gene            complement(919..2217)
                     /gene="eno"
                     /locus_tag="OQP62_004028"
     CDS             complement(919..2217)
                     /gene="eno"
                     /locus_tag="OQP62_004028"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HCS1723438.1"
                     /translation="MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTG
                     SREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTEN
                     KSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHA
                     DNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGS
                     NAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHF
                     LEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKG
                     IANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQI
                     KTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA"
     gene            complement(2300..3937)
                     /gene="pyrG"
                     /locus_tag="OQP62_004029"
     CDS             complement(2300..3937)
                     /gene="pyrG"
                     /locus_tag="OQP62_004029"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HCS1723439.1"
                     /translation="MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPY
                     INVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRK
                     ERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQL
                     AVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPA
                     NERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEW
                     EQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVE
                     TRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARN
                     VAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSD
                     DSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPW
                     FVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK"
     gene            complement(4165..4965)
                     /gene="mazG"
                     /locus_tag="OQP62_004030"
     CDS             complement(4165..4965)
                     /gene="mazG"
                     /locus_tag="OQP62_004030"
                     /EC_number="3.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HCS1723440.1"
                     /translation="MTTNHQIDHLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETY
                     EVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHV
                     FGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGF
                     DWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAEIA
                     LQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL"
BASE COUNT         1186 a         1358 c         1213 g         1271 t
ORIGIN      
        1 tatcagcgct tttatacact catcgaaatt cacatagaga aaataaacaa tgcaaggtaa
       61 tggatgagtc acagacggca acggcaggcc gtccgtaaga ttaataatgc ctcaggcgat
      121 atttaaatat ttatgcgttt gcatagacag ccgccagtta cgcgcaatac acgtttcaat
      181 acacagacgc gtcgcgtctt ctttctggct aatgggctgc aaagcaatca cgcgcggttt
      241 atcatcgctc aacgtggcta acagttcatc cagcgcctca atatcacgaa ctcgcccaac
      301 gggatgcttg atttcattgg cgcgctccag cgcctgggaa agcacgtcat atcccccgcg
      361 catattcact tttggtgaaa ccgtgaccca ggtattgggc gtacagcgca cttcgtgcgt
      421 cccgctggtt tcaatctggc aactaaaacc actcttttca agcagatcgg tgagcggcat
      481 gaggtcgtga atacagggtt cgccaccggt gatgacaacg tgacgcgcgg tatagccctg
      541 acgattaatt actgccagca agtcttcact gctcgcagca ccccatttgt cgctctcttt
      601 ggtttttgcc agaatgctga acagagacac ttcccgatcg ctcagtttat cccaggtatg
      661 cttagtatca caccaggcac agccgaccgg acatccctgt aaacgaataa aaatagcggg
      721 gacgccggta aaataaccct cgccttgtag ggtctggaac atctcgttaa tcgggtactg
      781 catagcgttc tctgttaagg ggataatcgt taattattgc agatttcgtc tgcccggtca
      841 tgcacagcgg ctgcgctatt gaacagatac aaaaaaaccc gccgaagcgg gtttatacgt
      901 taagaggtaa aagcaggatt acgcctggcc tttgatctct ttacgaccgt tgtacggtgc
      961 tttttcgccc agagcttctt cgatacgaat cagctggttg tatttagcaa cacggtcaga
     1021 acggctcata gaaccggttt tgatctggcc tgcagcggta ccaacagcca ggtcagcaat
     1081 ggtagcgtct tcagtttcac cagaacggtg agagatgaca gcagtgtagc cagcgtcttt
     1141 cgccatcttg attgcagcca gagtttcggt cagagaaccg atctggttga atttgatcag
     1201 gatggagtta gcgatgcctt tctcgatgcc ttctttcagg attttggtgt tggttacgaa
     1261 caggtcgtca ccaaccagct ggattttgtc gcccagtact ttggtctggt atgcaaaacc
     1321 gtcccagtca gactcgtcca gaccatcttc gatggaaacg atcgggtact gtttggtcag
     1381 ttcttccagg aagtgggtga attcttcgga ggtgaatgct ttgttgcctt cgccagccag
     1441 aacgtattta ccgtctttgt agaattcaga tgctgcgcag tccatcgcca gggtgatgtc
     1501 tttacccagc tcgtaaccag ccgctttaac cgcttcagcg ataacagcca gcgcttcagc
     1561 gttggaaccc aggttcggcg catagccgcc ttcgtcaccc acagcggtgt tcatgccttt
     1621 gcctttcagc acttttgcca ggtgatggaa aacttcagaa cccatacgga tggcttcttt
     1681 aaccgttttc gcgccaaccg gctggatcat gaattcctgg atgtcgacgt tgttgtcagc
     1741 gtgctcgccg ccgttgatga tgttcatcat cggaaccggc atggagtatt tgcccggcgt
     1801 gccgttcagt tcagcaatgt gctcgtacag cggcatacct ttagcggcag cagcagcttt
     1861 ggcgttagcc agagagacag ccagaatggc gtttgcaccg aagttagatt tgttttcagt
     1921 accgtccagg tcgatcatga ttttgtcgat gccagcctgg tctttagcgt ctttgccaag
     1981 aatagcctga gcgatcgggc cgttaaccgc gccaacagct ttggttacgc ctttacccag
     2041 gaaacgggat ttgtcgccat cgcgcagttc cagcgcttcg cgggaaccag tagaagcacc
     2101 tgacggagcc gccgccatac ctacgaaacc accttccagg tgtacttcag cttcaacagt
     2161 cgggttacca cgggagtcga tgatttcacg accgatgact ttaacgattt tggacattag
     2221 gttttcctca agtcactagt taaactaaaa cttcagacaa acggtgcacc gctgagggtg
     2281 caccgccgtt ctaacttttt tacttcgcct gacgtttctg atgctcgttg gcggctttaa
     2341 caaagccggc gaacaacgga tgtccatcac gcggcgtgga agtaaattcc ggatggaact
     2401 gacaggccac gaaccacgga tgattcggta cctcaatgat ctcgactaac tgatcatcac
     2461 cggaacggcc tgcgacacgc agacccgctg cttcaatttg tttcaacaac atattgttga
     2521 cttcgtaacg atggcgatga cgttcaacaa tcgtcgacgc gccgtacaac tgacgtacca
     2581 ggctgtcatc gctaagctgg cactgctgcg cgcccaggcg catggtgccg cccagatcgc
     2641 ttttctcgct acggacttca acgttaccgt cttcatcgcg ccactcggta attaacgcca
     2701 caaccgggta cttacagtct ggcacaaatt ccgttgagtt ggcgttgtcc atgccggcca
     2761 cgttacgagc gaactcaatc aacgcaacct gcatccccag gcaaatgccc agataaggaa
     2821 tattgttttc acgcgcatag cgcgcagtgg cgattttacc ttcaacgcca cgatagccga
     2881 agccgccggg gatcaggata gcgtccaaat ctttcagaat ttcgacgccg cgcgtttcaa
     2941 catcttgcga atcgatcaat ttgatgttga cggtaacgcg gtttttcaga ccaccgtgtt
     3001 tcagcgcttc gatcaccgac ttataggcat ccggcagttc aatatatttg ccgaccatgc
     3061 cgatagtcac ttcgcctgcc gggttcgctt cttcgtaaat gacctgttcc cattcagaca
     3121 ggttagcttc cggacagttc aagctgaatc gtttacaaat ataatcatca agcccctgag
     3181 atttcaacag gcctggaatt ttataaatgg aatcgacatc tttcattgaa ataacggctt
     3241 tttccggcac attacagaac aatgcaattt ttgcacgctc gttggcagga accgcacggt
     3301 cggaacgaca aatcagaata tcgggctgaa taccgataga cagcagctct ttcacggagt
     3361 gctgagtcgg tttagttttc acttcgcccg cagccgccag gtaaggtacc agcgtcaggt
     3421 gcataaacag cgcgtgttca cgaccgatat ctaccgccaa ttgacgaatc gcctcaagaa
     3481 acggcagcga ttcgatatca ccgacggtac cgccgatttc caccagcacc acatcgtggc
     3541 cttcgccacc ttccagcacg cgctctttaa tcgcgttagt gatgtgaggg atgacctgta
     3601 cggttgcgcc cagatagtcg ccacggcgtt ctttacgcag aacgtcggag tagatacggc
     3661 cagtcgtgaa gttgttgcgg cgagacatct tggtgcggat gaaacgctcg tagtgcccca
     3721 ggtccaggtc ggtttcagcg ccgtcttcag taacgaacac ttccccgtgt tggattgggc
     3781 tcatagtacc cggatcgacg ttgatgtacg gatccagttt catgatggtc acgttgagac
     3841 cacgggcttc cagaatggct gcgagggagg ctgcggcaat gcctttaccc agagaggata
     3901 cgaccccgcc ggtcacaaaa atatagttcg ttgtcatgcg gaacctgaga agttaggttt
     3961 aaaagacgat ggaataacca ggacgggaaa gcagtatacc cgaacatgac ctacgccaca
     4021 aactttcatt attcctcctc ttcgccaggc tgacattcac acagggaggg agaaaatagc
     4081 ccctttgagg taaatgtttt tgacgtaaat caagcgcttg ttatttaaaa aatcacacaa
     4141 atcgctcttg accgcctaaa acctttagag atcaatttcc tggcgtttta cttcctgcca
     4201 aacttcttcc attgtttcca ggtctacccc ggtcatttcc aggcctctgg ctgcgacaat
     4261 acgttcaact tcgcgaaaac gacgttcaaa tttatcgttc gctttttgca aagcgatctc
     4321 cgctttcgta cctaaatgac gcgccatgtt gaccgtggca aagagcaaat cgcccatttc
     4381 ctcttccagt ttagcctgat caacaaccgc ctgccgcgcc tcgaacatca cctcatcgat
     4441 ctcttcatag accttatcga cgaccggccc cagcgtcgtc cagtcgaagc ccacgtttga
     4501 acaccgtttc tggatttttt gcgcgcgcat taaggccggt aagctgcgcg gaatatcgtc
     4561 cagcgcggaa tgctgcgctt tttgcgcgcg ctcttccgtt ttgatttgct cccagcgaac
     4621 taatgcttct tcgctattat ccgcggaaag ctcgccaaaa acatgcggat ggcggcgctc
     4681 cagcttgtcg ctgatggcag cgcaaatatc attaaaatcg aagcggcctt cttcctgcgc
     4741 catctgcgcg taaaacacca cctggaacaa caggtcgccc agttcgccgc gcaaatcgtc
     4801 aaaatcctca cgcgcaatcg catccagtac ttcataggtt tcttccagtg tataaggcgc
     4861 gatgctggcg aaggtctgct ctttatccca cgggcagccg ttttccgggt cgcgcaggcg
     4921 ctgcatgagg gtgagaagat ggtcaatttg atggttagtt gtcatggtct ttaatcggtt
     4981 gtaaatacta gcgacaattg taacgtatta ttcttaacca ttcacgca
//
LOCUS       DAJVSD010000281         5012 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.281, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000281 DAJVSD010000000
VERSION     DAJVSD010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5012)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5012)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5012
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.281"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(252..3125)
                     /gene="gcvP"
                     /locus_tag="OQP62_004031"
     CDS             complement(252..3125)
                     /gene="gcvP"
                     /locus_tag="OQP62_004031"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HCS1723441.1"
                     /translation="MTQTLSQLENRGAFIERHIGPDAAQQQEMLNAVGAESLNALTGQ
                     IVPKDIQLATPPQVGEAATEYAALAELKAIAGRNKRFTSYIGMGYTAVQLPPVILRNM
                     LENPGWYTAYTPYQPEVSQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAM
                     AKRVSKLKNANRFFVAADVHPQTLDVVRTRAKTFGFDVIVDDADKVLDHQDVFGVLLQ
                     QVGTTGEIHDYGTLISELKARKVIVSVAADFMALVLLTAPGKQGADIVFGSAQRFGVP
                     MGYGGPHAAFFAAKDEFKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNI
                     CTSQVLLANIASLYAVYHGPVGLKRIANRIHRLTDILAAGLQQKGLKLRHAHYFDTLC
                     VEVADKAAVLARAEAAEINLRSDIHNAVGITLDETTTRENVAQLFNVLLGDSHGLNIE
                     TLDKDVALDSRSIQQGMLRDDAILTHPVFNRYHSETEMMRYMHSLERKDLALNQAMIP
                     LGSCTMKLNAAAEMIPITWPEFAELHPFCPPEQAEGYHQMISQLSDWLVKLTGYDAVC
                     MQPNSGAQGEYAGLLAIRHYHGSRNEGHRDICLIPASAHGTNPASAHMAGMQVVVVAC
                     DKNGNIDLDDLRAKAEQHAANLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDG
                     ANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVV
                     QIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKQASQVAILNANYIASRLKD
                     AYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFHAPTMSFPVAGTLM
                     VEPTESEGKAELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAEWAHP
                     YSREVAVFPAGVADKYWPTVKRLDDVYGDRNLFCSCVPISDYQ"
     gene            complement(3288..3677)
                     /gene="gcvH"
                     /locus_tag="OQP62_004032"
     CDS             complement(3288..3677)
                     /gene="gcvH"
                     /locus_tag="OQP62_004032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HCS1723442.1"
                     /translation="MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVD
                     LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWI
                     FKIKASDESELESLLDATAYEALLEDE"
     gene            complement(3703..4797)
                     /gene="gcvT"
                     /locus_tag="OQP62_004033"
     CDS             complement(3703..4797)
                     /gene="gcvT"
                     /locus_tag="OQP62_004033"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HCS1723443.1"
                     /translation="MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHAVRTDA
                     GMFDVSHMTIVDLHGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIVY
                     YFTEDFFRLVVNSATREKDLSWITQHAEPYAIDITVRDDLSLIAVQGPNAQEKAATLF
                     TDQQRHAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEKAADFWRALVEAGVKP
                     CGLGARDTLRLEAGMNLYGQEMDEGISPLAANMGWTIAWEPADRDFIGREALEMQREK
                     GHEQLVGLVMTEKGVLRNELPVRFTDAQGNQQEGIITSGTFSPTLGYSIALARVPAGI
                     GETAIVQIRNREMPVKVTKPVFVRNGKAVA"
BASE COUNT         1136 a         1451 c         1296 g         1129 t
ORIGIN      
        1 aacagcaagg taaaaatgat gcacaatgaa tcattaggct ctaaaaaacc ggtaatttaa
       61 ttctggctaa tacactgata caaacgccag gttgcctgac aggagccaac gatttactgt
      121 aatatattga attagtaaca ctttgtagcc tgaataaggc actcacactg catccgacat
      181 aaacaaaacg cactttatta acaagctgaa aaggcgccga agcgccttta gaaaacagtc
      241 gaatcagtaa attactggta gtcgctaatc ggtacgcagg agcagaacag gttacggtcg
      301 ccataaacat catccagacg tttcaccgtc ggccagtatt tgtctgccac gcctgccggg
      361 aatacggcaa cttcacggct gtacggatgc gcccactcgg cgaccagttc gctctgaatg
      421 tgcggcgcgt tcaccagcgg gttatcttcc agcggccaga caccggcttt cacctggtca
      481 atctctgcgc ggatagccag catcgcatcg ataaagcgat ccagctcagc cttaccttca
      541 gattccgtcg gctctaccat cagcgtgccc gccaccggga acgacatggt tggcgcatgg
      601 aaaccatagt cgatcagacg cttggcaata tccagctcgc tgatgccggt ttcttctttc
      661 aatgggcgaa tatcaagaat acattcgtgc gccactcggc catcgcgacc ggtatacagt
      721 accgggtacg cgtctttcag acggctggca atgtagttag cgttaagaat cgcgacctga
      781 cttgcctgct tcaggccttc tgcgcccatc atgcggatgt acatccaact aatcggcaaa
      841 atggaggcgc tgccgaacgg cgccgcagac accgcgccct gacgggtgag catcccttca
      901 atttgcacca cgctatgacc cggtacgaat ggcgccagat gcgctttcac gccgatcggt
      961 cccatgcctg ggccaccgcc gccgtgcgga atgcagaaag ttttatgcag gttaagatgc
     1021 gaaacgtccg cgccaataaa gcccggtgag gtaatgccga cctgagcgtt catgttcgcg
     1081 ccgtcaaggt aaacctgacc gccgaactgg tgcacaactt cacacacttc acggatcgtt
     1141 tcttcataga cgccgtgggt ggacggatag gtcaccatga tgcaagagag gttcgcagca
     1201 tgttgttctg ctttggcccg cagatcgtcc aggtcgatgt tgccgttctt atcacacgcc
     1261 acaaccacca cctgcattcc tgccatatgt gcagaagcag ggttagtgcc gtgagcagag
     1321 gccggaatca ggcagatatc gcgatgccct tcgttgcggc ttccgtgata atgacgaatc
     1381 gccagcagcc ccgcgtactc cccctgcgcg ccggagttcg gctgcataca gacggcgtcg
     1441 tacccggtga gtttcaccag ccagtcagaa agctggctaa tcatctgatg atatccttcg
     1501 gcctgctccg gcgggcagaa cgggtgcagt tcagcgaatt ccggccaggt gatagggatc
     1561 atctcggcgg cggcgttcag cttcatggtg caggaaccca gcgggatcat cgcctggttc
     1621 agcgccagat ctttacgctc cagcgagtgc atatagcgca tcatctcggt ttcgctgtgg
     1681 tagcggttaa ataccggatg cgtcagaatc gcatcgtcac gcagcatacc ttgctgaatg
     1741 gaacggctat caagcgccac gtctttatcc agtgtttcaa tgttcagacc gtggctgtcg
     1801 cccagcaaaa cattgaacaa ctgcgccaca ttctcacggg tggtggtttc atcaagggta
     1861 atacccaccg cgttatgaat atcgctgcgc agattgatct ctgccgcttc cgcacgcgcc
     1921 agtaccgcag ctttatcagc tacttccaca cacagcgtgt caaagtagtg cgcatgacgc
     1981 agctttaagc ctttctgttg cagaccggcc gccagaatat cggtcaggcg gtggatacga
     2041 ttcgcaatgc gtttcaggcc aaccggtcca tgataaacgg catacagact ggcgatgtta
     2101 gccagcagta cctgcgaggt acaaatgttg gagttcgctt tctcacggcg gatatgctgc
     2161 tcgcgagtct gcatcgccat gcgcagtgcg gtattgcccg ccgcatcttt tgagacgccg
     2221 ataatacggc ctggcatgga gcgtttaaat tcgtctttgg cggcaaagaa cgccgcgtgc
     2281 gggccaccgt aacccatcgg tacgccaaaa cgttgcgcag agccgaaaac aatatccgcg
     2341 ccctgtttgc ccggcgcggt aagcagcacc aacgccataa aatcggcggc gacgctgaca
     2401 atcaccttac gggctttgag ttcgctaatc agcgtgccgt agtcgtgaat ttcgcccgtg
     2461 gtgcctacct gttgtaacag cacgccaaat acgtcctgat gatccagcac tttgtccgcg
     2521 tcatcgacaa tcacgtcaaa gccaaaggtt ttggcgcgtg tacgtaccac gtccagcgtt
     2581 tgcggatgga cgtcagccgc cacaaagaaa cggttggcat ttttcagttt gctgacgcgc
     2641 tttgccatcg ccattgcttc ggcggcagcg gtggcttcgt caagaagaga agccgaagcc
     2701 atatccagtc cggtcagatc cagcgtcacc tgttggaagt tgagcagcgc ttccaggcgc
     2761 ccctgagaga cttccggctg ataaggagtg taggcggtat accagcctgg attttccagc
     2821 atgttgcgca ggataaccgg cggtagctgc acggcggtgt agcccatgcc aatgtaggac
     2881 gtgaagcgct tgttacgccc ggcgatggct tttaattccg ccagtgcggc atattcggtt
     2941 gccgcctcgc caacctgcgg cggagtcgcg agctgaatgt ctttcggcac aatctgacct
     3001 gtcagcgcgt ttaacgactc ggcgccaacc gcattcagca tctcttgctg ctgcgcggcg
     3061 tccggtccga tgtggcgttc aatgaaagcg ccgcggtttt caagctggct tagcgtctgt
     3121 gtcatgggcg atggttcctg aaacgtgcag tgaatcgtag gtgtctctaa ctcaattgcc
     3181 cggtggcgct gacgcttacc gggcctacgc gtgcgaaaac gaatacgcaa aatcattcgc
     3241 gttgcagtga gtaggccgga taagcattag cgccatccgg cacaacatta ttcgtcttct
     3301 aacaatgcct catacgcggt ggcatccagc agcgattcaa gctcgctttc atcgctggct
     3361 ttgattttaa agatccagcc accggcatac ggttcgctgt tcaccagctc cggggagtcg
     3421 ctcagcgcat cgtttaccgc cacgatctcg ccgcttaccg gcgcataaat gtcggacgcc
     3481 gcttttacgg actccgccac ggcgcagtcg tcgcccgcgc ttacggtcgc gccgacttcc
     3541 ggcagatcaa caaaaaccat atcgcccaac agctcctgag cgtgttcagt aatgccaacg
     3601 gtgtaagtgc catccgcttc tttacgcagc cattcgtgtt ctttgctgta tttcagttct
     3661 gcgggtacgt tgctcatcaa ttaatctcca aaaaaggatg aatcacgcga cggctttgcc
     3721 gttacgcaca aaaacaggtt tagtcacttt taccggcatt tcacggttac gaatttgtac
     3781 aatcgccgtc tcgccgatgc ccgccggaac gcgcgccagc gcaatgctgt agcccaacgt
     3841 tggggaaaac gtcccgctgg tgataatgcc ttcttgctga ttgccctgcg catcggtaaa
     3901 acgcaccggc agttcattac gcaatacgcc tttctcggtc atcaccagac cgacaagctg
     3961 ctcatggcct ttttcacgct gcatctccag cgcctcacgg ccaataaagt cgcggtcagc
     4021 aggttcccag gcgatagtcc atcccatatt agccgccagc ggagagatac cttcatccat
     4081 ctcctgaccg tacaggttca tgcctgcttc cagacgcagc gtgtcgcgcg cgccaagacc
     4141 gcacggcttc acgcccgcct ccaccagcgc acgccagaaa tccgccgctt tttcattcgg
     4201 catggcgatt tcatagcccg cttcgccggt ataaccggtg gtggcgataa acagatcgcc
     4261 cgcctgaacg ccgaagaacg gcttcatacc ttctactgca tggcgctgtt ggtcagtaaa
     4321 cagagtcgcc gctttttcct gcgcattcgg cccctgtacc gcaatcagcg acaggtcgtc
     4381 acgaacggtg atgtcgatgg cataaggttc agcgtgttgg gtaatccagg agaggtcttt
     4441 ttcgcgggtg gcggagttaa caacgagacg gaagaaatct tcagtgaagt agtagacaat
     4501 caggtcatct atcacaccgc ccgatgcgtt aagcataccg gagtagaggg ctttacccgt
     4561 cttcgttagc ttcgcgacgt cgtttgccag cagataacgt agaaactctc gtgtacggct
     4621 accatgaaga tcgacaatgg tcatatgcga tacatcaaac atcccggcat cggtgcgcac
     4681 agcgtggtgt tcatcaagct gagagccgta atgcaggggc atcatccagc catgaaaatc
     4741 gaccatgcgg gcgccgcata gcgtgtgttg ttcgtacaaa ggcgtctgtt gggccatctt
     4801 ttcctcgttg aattagcggg ggctaacaac cattttcatg ggaaatcttc gccacgaaac
     4861 ctggcatcga cgcccttttt cctgcgccga cgcaaacgtt ctcttgctcc tgaacttacc
     4921 accgaaccag gcgctaaacc ataaggctga atttaccatc acattagctt atgactaaaa
     4981 aacgctaaaa tcccatcagc acaaaaaacc ac
//
LOCUS       DAJVSD010000282         4983 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.282, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000282 DAJVSD010000000
VERSION     DAJVSD010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4983)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4983)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4983
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.282"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(103..849)
                     /locus_tag="OQP62_004034"
     CDS             complement(103..849)
                     /locus_tag="OQP62_004034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MipA/OmpV family protein"
                     /protein_id="HCS1723444.1"
                     /translation="MTKLKLLALGVFIATSASVAHAESNLTLGAGVGVVEHPYKDYDS
                     DVYPIPVIAYESENFWFRGLGGGYYLWNDNADKLSIMAYWSPMYFKPGDSDDHQLRRL
                     DRRKSTMMAGVSYAHHTQYGFLRTSLAGDTLDNSNGIVWDLAWLYRYTNGGLTLTPGI
                     GVEWNSENQNDYYYGVSRKESSRSGLRGYNPNDSWNPYLELSANYNFAGNWSVYGTAR
                     YTRLSDEITDSPMVDKSWTGILSTGVTYRF"
     gene            1275..3209
                     /gene="yeaG"
                     /locus_tag="OQP62_004035"
     CDS             1275..3209
                     /gene="yeaG"
                     /locus_tag="OQP62_004035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase YeaG"
                     /protein_id="HCS1723445.1"
                     /translation="MNIFDHYRQRYEAAKDEEFTLQDFLTICRQDRSAYANAAERLLM
                     AIGEPNMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEK
                     KQILYLLGPVGGGKSSLAERLKSLMQRVPIYVLSANGERSPVNDHPLCLFNPQEDAQI
                     LEKEYGIPRRYLGTIMSPWAAKHLHEFGGDITKFRVVKVWPSILEQIAIAKTEPGDEN
                     NQDISALVGKVDIRKLEHHAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLPPLL
                     TATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLR
                     ISEEIKIYEKLLNHSELAHAPCAPGTLETLSRFSTLSRLKEPENSSIYSKMRVYDGES
                     LKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHAEVAANPVHLFYVL
                     EQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVT
                     YADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARAN
                     NSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQKKHDDFVDRMMEKG
                     YTRKQVRLLCEWYLRVRKSS"
     gene            3332..4618
                     /locus_tag="OQP62_004036"
     CDS             3332..4618
                     /locus_tag="OQP62_004036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaH/YhbH family protein"
                     /protein_id="HCS1723446.1"
                     /translation="MTWFIDRRLNGKNKSTVNRQRFLRRYKAQIKQSISEAINKRSVT
                     DVDSGESVSIPTDDISEPMFHQGRGGLRHRVHPGNDHFIQNDRIERPQSGGGGGSGSG
                     QGQASQDGEGQDEFVFQISKDEYLDLLFEDLALPNLKKNQHRQLNEYKTHRAGFTSNG
                     VPANISVVRSLQNSLARRTAMTAGKRRELHALETELETISHSEPAQLLEEERLRREIA
                     ELRAKIERVPFIDTFDLRYKNYEKRPEPSSQAVMFCLMDVSGSMDQATKDMAKRFYIL
                     LYLFLSRTYKNVEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMDEVVKERYD
                     PSQWNIYAAQASDGDNWADDSPLCHEILAKKLLPVVRYYSYIEITRRAHQTLWREYEH
                     LQATFDNFAMQHIRDQEDIYPVFRELFQKQSANQSA"
     gene            complement(4768..4974)
                     /locus_tag="OQP62_004037"
     CDS             complement(4768..4974)
                     /locus_tag="OQP62_004037"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723447.1"
                     /translation="MKRFKEIAAILLFALLAVGFTSSAMASSGSGGGPWDFDIYFPGH
                     YFFCKLQPPDSLQLPPPPGEYCWH"
BASE COUNT         1319 a         1249 c         1231 g         1184 t
ORIGIN      
        1 ggtcaacagc gcatttatgc aagccgccat gttcgcgttt cagacagcac aaagcccgca
       61 taacgcaggc tttgtcatgg tttttccggc aaattcaatc aatcagaatc tataggtcac
      121 gccagtagaa aggataccgg tccaggattt atccaccatc gggctgtcgg taatttcatc
      181 cgacaggcgg gtgtagcgcg cagtaccata tacgctccag ttaccggcga aattatagtt
      241 agcgctcagt tcaagatacg ggttccagct atcgttcggg ttatagccgc gcaggccgct
      301 acgcgaagat tctttacgtg atacgccgta atagtaatcg ttctggttct cgctattcca
      361 ttcaaccccg atacctggcg ttaaggtcag cccgccattg gtataccgat acagccaggc
      421 cagatcccag acaataccgt tactgttatc taacgtatcc cctgccagtg aggtacgcag
      481 gaatccatac tgggtgtggt gcgcgtaaga aacgcccgcc atcatagtac ttttacgcct
      541 gtccagacga cgcaactgat ggtcatcgct gtcgcccggt ttgaagtaca tcggggacca
      601 gtatgccatg attgacaact tatcggcatt gtcattccac aagtagtacc cgccgcccag
      661 accacggaac cagaagtttt cgctttcata agcgatgacc ggtatcggat aaacatcgct
      721 atcgtaatct ttataagggt gttcaaccac accaacgcct gcgcccaacg tcaggttgct
      781 ttcagcgtgc gcgacgctgg cggatgttgc aataaacacg ccaagagcca gaagtttaag
      841 tttggtcaca atccataatt ccttattcaa atgttctgcg gcaaaagtgt aaccgccaat
      901 acctgtaagc ccaactattt tacacaatgt aaccgtttaa tatcaccatc accgattatt
      961 ttcagatgat cggctgatga tcgttatgtg gccgggaacg ctttttctga tatccaccag
     1021 ccttttctac ctgatgagtt attgatatgt catcgaaatt cactgacgcg tacaggcaag
     1081 ttttgcaaat gccatctacg cttaatgtta agaaggtgta tcaccggaca cgttgatctt
     1141 ctgaccaata aaatggcatg agagttgctt tttttcctta gcagagacgg cgttcagtct
     1201 acctcttccg ggagcctcta ctattcatat gaacggctct taacatgtgc gaaaaaacga
     1261 aagaatggca tatcatgaat atattcgatc actatcgcca gcgttacgaa gctgccaagg
     1321 acgaagagtt cacactgcag gattttctta ccatttgtcg gcaagatcgc agtgcttatg
     1381 ccaacgcggc agagcggcta ttaatggcta tcggcgagcc taatatggtc gacactgccc
     1441 aggaaccccg actttcccga ctcttctcca accgggttat tgctcgctat cctgcgtttg
     1501 aagagtttta cggcatggaa gacgcgattg aacagattgt ctcttatctg aaacatgcgg
     1561 cgcaagggct ggaagagaag aagcaaattc tctatttgct gggacctgtg gggggtggca
     1621 aatcatcgct cgctgaacgg ctgaaatcgc taatgcagcg cgtgccaatt tatgttttaa
     1681 gcgccaacgg cgagcgtagt ccggtcaacg atcatccgtt atgcctgttt aatccgcagg
     1741 aagacgcgca gattctggaa aaagagtacg gtattccgcg ccgctatctc ggtacgatta
     1801 tgtccccgtg ggcggccaaa cacctgcatg agtttggcgg cgatattact aaattccgcg
     1861 tggtgaaagt ctggccctcc attctggagc agattgccat cgccaaaacg gaacccggcg
     1921 atgaaaacaa ccaggatatt tcggcgctgg tcggcaaggt ggatattcgt aaactcgaac
     1981 atcacgccca gaacgatccg gatgcgtatg gttactctgg cgcgctatgc cgcgctaacc
     2041 aggggatcat ggagttcgtc gagatgttta aagcgcctat taaggtgctg ccccccttgc
     2101 tgaccgcaac tcaggaaggt aactacaatg gtacggaagg tatttccgcc ctgcccttta
     2161 atggcatcat acttgcccac tcaaacgaat ctgaatgggt gactttccgt aacaataaaa
     2221 ataacgaagc gttcctcgac cgtgtctata ttgtgaaggt gccttattgc ctgcgaatct
     2281 ccgaagagat caaaatctac gagaaactac ttaatcatag cgagctggct catgcgccct
     2341 gcgcgccggg cacattggaa acgctttcgc gcttctcgac tctttcccgc ctgaaagagc
     2401 cggaaaattc cagtatttac tcgaaaatgc gcgtttatga cggtgaaagc ctgaaagata
     2461 ccgaccccaa agctaaatcg taccaggagt atcgcgacta tgcgggtgtg gacgaaggga
     2521 tgaacggtct ctccacccga ttcgccttta agatcctctc ccgcgtattc aacttcgacc
     2581 atgcggaagt ggcggcaaac ccggtacatc tgttctacgt tctggaacaa caaatcgagc
     2641 gcgagcagtt cccgcaggag caagctgagc gttatctgga gttcctgaaa ggctacctga
     2701 tcccgaaata cgccgaattt atcggcaagg agatccagac ggcctatctc gaatcttact
     2761 ctgagtacgg gcagaacatt tttgatcgtt acgtgactta tgcggatttc tggattcagg
     2821 atcaggagta tcgcgaccca gataccggtc aactgttcga tcgcgagtcg ctgaacgccg
     2881 aactggaaaa aattgaaaaa ccagcgggta tcagtaaccc gaaagatttc cgtaatgaga
     2941 tagtaaactt tgtcctgcgc gccagagcca acaatagcgg ccgtaatcca aactggacca
     3001 gttacgagaa gctgcgcacg gtgattgaga aaaaaatgtt ctctaatact gaagagctgt
     3061 tgccggtcat ttcttttaac gccaaaacgt cgactgacga gcagaaaaag catgacgact
     3121 ttgtcgatcg gatgatggaa aaagggtata cccgtaagca ggttcgtttg ctgtgcgagt
     3181 ggtacctgcg cgtgcgtaaa tcgtcgtgat gttaatgccc ggtggcgctt gcgcttaccg
     3241 ggcctacaaa gtaatgttct gtagactggc taagcgttag cgctatccgg cactaacaga
     3301 acaggcgctc agttggcagt acggggggca tatgacctgg ttcatagacc gacgtcttaa
     3361 cggcaaaaat aaaagcacgg tgaatcgcca gcgctttttg cgtcgttata aagcacaaat
     3421 taagcagtcg atttccgaag cgattaataa acgctcagtg accgatgtcg acagcggaga
     3481 gtccgtctct attccaaccg atgatattag cgaaccgatg tttcatcagg ggcgcggcgg
     3541 tctgcgccat cgcgtccatc cgggtaacga tcactttatc cagaatgatc gcattgagcg
     3601 tccgcaaagc ggtggcggcg gcggttccgg cagcggtcaa ggtcaggcca gccaggacgg
     3661 cgaaggccag gatgagtttg tttttcagat ttcaaaagat gagtatctgg atctgctctt
     3721 tgaagattta gcgctgccta atctgaaaaa aaaccagcat cgccagctta acgagtataa
     3781 aactcaccgc gccggtttca cctcaaacgg cgtgccggcc aatatcagcg tggtacgttc
     3841 gctacaaaac tctctggcgc gccgtacagc aatgacggca ggaaaacgcc gcgaactgca
     3901 cgcgctggaa acggaactgg agaccatcag ccacagcgaa ccagcgcaac tgcttgaaga
     3961 ggagcggtta cgtcgggaga ttgccgaact acgggctaaa atcgagcgag tgccgtttat
     4021 cgacactttt gatttacgct ataaaaatta tgaaaaacga cctgagccct ccagccaggc
     4081 ggtgatgttc tgtctgatgg acgtctcggg ttcgatggac caggcaacca aagatatggc
     4141 caagcgtttt tacattctgc tttatctgtt tttgagccga acgtataaga acgtagaagt
     4201 ggtttatatc cgccaccata cccaggcgaa ggaagtggat gaacatgagt tcttttattc
     4261 gcaagagacc ggggggacga ttgtctccag cgcgcttaaa ctcatggacg aagtagttaa
     4321 agagcgctac gaccccagtc agtggaacat ctatgcggcg caagcgtcag acggtgataa
     4381 ctgggccgac gattcaccgc tgtgtcatga gattctggcg aaaaagctgc tgccggtagt
     4441 gcgctattac agctatatcg agattacccg ccgcgcccac cagaccttat ggcgcgagta
     4501 tgaacatctg caggcgacgt tcgataactt cgccatgcag catattcgcg atcaggagga
     4561 tatttatccg gtattccgcg aattgtttca gaaacagagc gccaatcaaa gtgcataacc
     4621 ctaaatcagc ccgtaatgcg tcacgggctg atttatcact aacaaggcga ttatacatat
     4681 tgccactaca atagccgtaa acctgtatat ctcctgactg gatttacctt acatgcgccg
     4741 acttatcact ggaatagtat ggatttatta atgccagcaa tactcaccag gaggtggcgg
     4801 taattgcaga gaatcagggg gttgtagttt gcaaaaaaag tagtgaccag gaaaatagat
     4861 atcaaaatcc cacgggccac caccactgcc cgacgatgcc atagccgacg acgtgaaccc
     4921 cacggccagc aatgcaaaaa gcaaaattgc tgctatttct ttaaatcgtt tcatagtacc
     4981 tcc
//
LOCUS       DAJVSD010000283         4941 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.283, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000283 DAJVSD010000000
VERSION     DAJVSD010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4941
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.283"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(82..1749)
                     /gene="glnS"
                     /locus_tag="OQP62_004038"
     CDS             complement(82..1749)
                     /gene="glnS"
                     /locus_tag="OQP62_004038"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HCS1723448.1"
                     /translation="MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGH
                     AKSICLNFGIAQDYQGQCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGDIRYSSD
                     YFDQLHAYAVELINKGLAYVDELTPEQIREYRGTLTAPGKNSPFRDRSVEENLALFEK
                     MRTGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGTKWCIYPMYDFTHCI
                     SDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL
                     LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRE
                     DLNENAPRAMAVIDPVKLVIENYPQGESEMVTMPNHPNKPEMGSREVPFSGEIWIDRA
                     DFREEANKQYKRLVMGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPAD
                     GRKVKGVIHWVSVAHALPIEIRLYDRLFSVPNPGAAEDFLSVINPESLVIKQGYGEPS
                     LKAAVAGKAFQFEREGYFCLDSRYATADKLVFNRTVGLRDTWAKAGE"
     gene            complement(1960..3912)
                     /gene="nagE"
                     /locus_tag="OQP62_004039"
     CDS             complement(1960..3912)
                     /gene="nagE"
                     /locus_tag="OQP62_004039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N-acetyl glucosamine transporter subunit
                     IIABC"
                     /protein_id="HCS1723449.1"
                     /translation="MNILGFFQRLGRALQLPIVVLPVAALLLRFGQPDLLNMPFIAQA
                     GGSIFDNLALVFAIGVASSWSKDSAGAAALAGAVGYFVMTKAMVTINPEINMGVLAGI
                     ITGLVGGAVYNRWSGIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHGIH
                     AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINR
                     FYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAITAFLTGV
                     TEPLEFLFMFLAPLLYLLHAILTGISLFVATLLGIHAGFSFSAGAIDYVLMYNLPAAS
                     NNVWMLLVMGVVFFIIYFLLFSAVIRMFNLKTPGREDKVDEMVTEEANSNTEEGLTQL
                     ATSYIAAVGGTDNLKAVDACITRLRLTVNDSARVNDAACKRLGASGVVKLNKQTIQVI
                     VGAKAESIGDEMKKVVARGPVAAASADAAHVATPAPAAKPQAVPNAVTIAELVSPITG
                     EVVALDQVPDEAFASKAVGDGVAVKPTDKTVVSPAAGTIVKIFNTNHAFCLETEKGAE
                     IVVHMGIDTVALNGQGFKRLVEEGAEVTAGQPVLELDLDFLNANARSKISPVVCSNSD
                     DFSALVIKADGHVVAGQTPLYEIKSK"
     gene            4239..>4941
                     /gene="nagB"
                     /locus_tag="OQP62_004040"
     CDS             4239..>4941
                     /gene="nagB"
                     /locus_tag="OQP62_004040"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008805656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HCS1723450.1"
                     /translation="MRLIPLSTAEQVGKWAARHIVNRINAFKPTTDRPFVLGLPTGGT
                     PLTAYKALVEMHKAGEVSFKHVVTFNMDEYVGLPKEHPESYHSFMHRNFFDHVDIPAE
                     NINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIK
                     TLTHDTRVANSRFFDGDVNQVPKYALTVGVGTLLDAEEVMILVLGHQKAQALQAAVEG
                     NVNHMWTISCLQLHPK"
BASE COUNT         1198 a         1379 c         1257 g         1107 t
ORIGIN      
        1 acttagaaat gcagagaaaa aacgccgcag aacgcggcgt tgacaaggta tttttacagc
       61 attcgcctgt tggcgcagtg cttattcgcc cgctttcgcc caggtatcac gcaggcccac
      121 ggtgcggtta aagaccagct tatcggccgt tgcatagcgg ctgtcaaggc agaagtaacc
      181 ttcacgttca aactggaaag ctttccctgc taccgccgct ttcagcgacg gctcgccata
      241 cccctgctta atcactaatg attcggggtt gataacagac aggaagtcct ccgcggcgcc
      301 cgggttcggc acgctgaaca gacggtcgta gagacgaatt tcaatcggca gcgcatgtgc
      361 tacgctaacc cagtggatta cgcctttcac tttacgcccg tcagccggat ctttactcag
      421 cgtatcagca tcataggtac agaagatggt ggtgatattc ccttcggcat ccttctctac
      481 gcgctccgct ttaatgacgt aggcattacg cagacgcact tctttgccca tcaccagacg
      541 tttgtactgt ttgttcgctt cttcgcggaa atccgcgcga tcgatccaga tctcaccgct
      601 aaacggcact tcacggctgc ccatctccgg tttattcgga tggttaggca tggtaaccat
      661 ttcgctctcg ccctgcgggt agttttcgat aaccagtttt accggatcga ttaccgccat
      721 cgcgcgcggc gcgttttcgt tcagatcttc gcgaatgcag gattccagcg acgccatctc
      781 aatagtgttg tcctgcttgg tgacgccgat gcgtttgcag aactcacgaa tagaagccgc
      841 ggtatagccg cgacggcgca gaccggaaat agtcggcata cgcggatcat cccaaccttc
      901 gacgtgtttg tcggtcacca gcaggttcag cttacgcttg gacatcacgg tgtattccag
      961 attcaggcgc gagaattcgt actggcgcgg gtgaaccgga atggtgatgt tgtccagcac
     1021 ccagtcgtac agacgacggt tgtcctggaa ctccagcgta cacagagaat gagtaatgcc
     1081 ttccagcgca tcgctgatgc agtgagtaaa gtcgtacatc ggatagatgc accacttcgt
     1141 gccggtctga tgatgctcgg cgaatttaat gcgatacagc accggatcgc gcatcacgat
     1201 aaacggcgac gccatgtcga ttttagcgcg cagacaggct ttaccctctt caaaaccgcc
     1261 ggtacgcatt ttttcaaata gcgcgaggtt ttcttccacg ctgcgatcgc ggaacgggct
     1321 gtttttaccc ggcgcggtca gcgtaccacg gtattcgcgg atctgctccg gcgtcagctc
     1381 atcaacgtag gccaggcctt tattgatgag ctcgaccgca taggcgtgca gttggtcaaa
     1441 gtaatcggag gagtagcgaa tatcgccaga ccagtgaaag cctaaccact cgacgtcgtt
     1501 tttgatcgaa tcaacgtact cgatatcttc ttttaccggg ttggtgtcat cgaaacgcag
     1561 gttgcactgg ccctgataat cttgcgcgat gccaaagttc aggcagatag atttcgcgtg
     1621 gccgatgtgc agatagccat tcggctccgg cggaaaacgg gtatggacag tggtatgttt
     1681 accactcgcc agatcttcat caataatctg acgaataaag ttagtcgggc gggcttcagc
     1741 ctcactcatc gtggattcct caaagcgtaa acaacgtata acggcatatg atcttataag
     1801 ccggacagac tgacaacctt tagttactta aaaagtggct ttgcagaaaa tattggggct
     1861 aattgcggta aaaaaaagcg gcgaaggttt ccctctgccg cttatgtttc ctgtgatatc
     1921 gccggatggc gtcttacgcc ttatccggcc aggaagcgat tatttgctct tgatctcgta
     1981 cagcggcgtt tgacccgcta ccacgtgacc atccgctttg atgaccagag cgctgaagtc
     2041 atcgctgttg ctgcaaacaa ccgggcttat cttggaacgc gcattggcat tcaggaagtc
     2101 cagatccagt tccagaaccg gctgacccgc cgtgacttcc gcaccctctt ctaccagacg
     2161 cttgaagccc tgaccgttca gcgcgacggt atcgataccc atatggacaa cgatctccgc
     2221 gcctttttcg gtttccagac agaacgcgtg gttagtgttg aagattttca cgatagtacc
     2281 cgccgccgga gaaaccacgg ttttatcggt gggtttcacc gccacgccgt cgccgaccgc
     2341 tttgctggcg aaagcttcat ccggtacctg atccagcgcc actacctcac cggtaatcgg
     2401 agagaccagt tcagcgatag tcaccgcatt cggcaccgcc tggggtttgg ccgccggagc
     2461 aggtgtcgca acgtgagccg catcagcaga cgctgccgcg accggccccc gcgccaccac
     2521 tttcttcatt tcatcgccaa tcgattccgc tttcgcgccg acaataacct gaatggtctg
     2581 tttgttcagt ttcaccacgc cggaagcgcc gaggcgtttg caggccgcat cgttgacgcg
     2641 agcagagtcg ttcacggtca ggcgcagacg ggtaatgcac gcatcgaccg ctttcaggtt
     2701 gtccgtaccg ccaaccgcag caatatagct ggtcgccagt tgcgttaacc cttcttcggt
     2761 gttgctgttg gcttcttccg ttaccatctc atcaacttta tcttcgcggc ccggcgtttt
     2821 caggttaaac atacgaataa ccgcgctgaa cagcaggaag tagatgataa agaatacaac
     2881 gcccatcacc agcaacatcc agacgttatt gctggccgca ggcaggttat acatcagaac
     2941 atagtcgatc gcgcctgccg agaaagagaa gcccgcatgg atacccagca acgtcgcgac
     3001 gaacaggctg ataccagtca aaatggcgtg caggaggtac agcagcggcg ccaggaacat
     3061 aaacaggaat tccagcggct cggttacgcc ggtcagaaac gcggtgatcg cgacagacag
     3121 cagcataccg cccaccatcg gacgacgttc tttcggcgcg gcgaaataca tcgccagagc
     3181 ggcgcccggc agaccaaaca tcatgatcgg gaagaagccg gacataaaca tccccgccgt
     3241 gccgtcgcca gcatagaagc ggttgatgtc gccgtggaat acagtgcctg cggcattggt
     3301 gaattcgcca atctggaacc aggcgatggt gttcagtacc tgatgcagac cggtggggat
     3361 cagcagacgg ttgatgaagc caaagatacc ggaacccaac gcgcctgcgg aaacgatcca
     3421 ttcaccgccc gcatggatgc catgctgtac cggcggccag acgtaaccga aaatagcggc
     3481 cagcaccaga cagaaaaagc ccgttgcgat cggcacaaaa cgttttccac cgaagaaact
     3541 gagaaaatca ggcagtttga taccagacca gcgattataa accgcgccgc cgaccagacc
     3601 ggtaataatc cccgccagca cgcccatgtt gatttccggg ttaatcgtca ccatcgcttt
     3661 ggtcatgacg aagtaaccca cggctcccgc cagtgctgcc gcgcctgcgc tatctttaga
     3721 ccaactggag gccacgccga tagcgaaaac cagcgccagg ttatcgaaaa tagacccgcc
     3781 cgcttgcgcg ataaacggca tattcagcaa atctggttgg ccgaatcgca gcaacaacgc
     3841 tgccaccggc aacacgacga tagggagctg caacgcccta cccagccgct ggaaaaaacc
     3901 taaaatattc atcttattcc ccctacgaga cgccgatatg gcttctttga agccgttttt
     3961 tattgtgctg caaacgttaa aaacgtgatg ttctgtaatc gaacggtgag atcatcttct
     4021 gcagagtgtg tggaaaatta attcgcctcg caaattaaac gggtgttttt tgtgattata
     4081 atcactaaat atcgtaatca cccccaccat ccactggcta acacggaaaa cttattttat
     4141 gattcaaaaa atcaggacgg attgaacacg aaccctggat atccaggtta cgcttaatac
     4201 gatccgccaa attttgacat tgattattga ggtgaagaat gagactgatc cccctgagta
     4261 ccgcagaaca ggttggcaaa tgggccgctc gccatatcgt taaccgtatt aatgcgttca
     4321 aaccgaccac cgatcgtccg tttgttcttg gactgcctac cggcggcacg ccgctaacgg
     4381 cgtacaaagc gctggttgag atgcacaaag cgggcgaggt cagctttaag catgtggtca
     4441 cctttaatat ggacgaatat gttggcctgc cgaaagagca cccggaaagc taccacagct
     4501 ttatgcatcg taactttttc gatcacgttg atattccagc agaaaacatc aatcttctca
     4561 acggtaacgc accggatatc gatgcagaat gccgtcaata tgaagaaaaa attcgttctt
     4621 acggtaaaat ccatctgttt atgggcggcg tcggcaacga cggtcacatc gcctttaacg
     4681 aaccggcgtc ttccctggct tcccgtaccc gtatcaaaac gttaacccat gatactcgcg
     4741 tagcgaactc ccgcttcttt gacggcgacg taaaccaggt gccgaaatac gcgctgacgg
     4801 taggcgtggg tacgctgctg gatgcggaag aagtgatgat tctggtgctg ggccatcaga
     4861 aagcccaggc gctgcaggcg gcggttgaag gcaacgtcaa ccacatgtgg accattagct
     4921 gcctgcaact ccatccgaaa g
//
LOCUS       DAJVSD010000284         4901 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.284, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000284 DAJVSD010000000
VERSION     DAJVSD010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4901)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4901)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4901
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.284"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(249..650)
                     /locus_tag="OQP62_004041"
     CDS             complement(249..650)
                     /locus_tag="OQP62_004041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001543117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
                     /protein_id="HCS1723451.1"
                     /translation="MYTQMCISSYGVYTLLADTKLRKAPGKKRDQIKVISDAHGLNVR
                     LSTSGSITFFYRYRWNGNAAQLTIGDYPTISLSHARERRQYFRSWLTEGLDPRRQMVL
                     EKKKKTEALTVKEHTTTGRSFSTVRNLGQGH"
     gene            785..1675
                     /gene="sapC"
                     /locus_tag="OQP62_004042"
     CDS             785..1675
                     /gene="sapC"
                     /locus_tag="OQP62_004042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter permease SapC"
                     /protein_id="HCS1723452.1"
                     /translation="MPYDSVYSEKRPPGTLRTAWRKFYSDAPAMVGLYGCAGLALLCI
                     FGGWIAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGA
                     FIVTLAATLCGLVLGVVAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLSH
                     AMFAVWLALLPRMVRSVYSMVHDELEKEYVIAARLDGATTLNILWFAILPNITAGLVT
                     EITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAITLS
                     VLLVNLLGDGIRRAIIAGVE"
     gene            1675..2667
                     /gene="sapD"
                     /locus_tag="OQP62_004043"
     CDS             1675..2667
                     /gene="sapD"
                     /locus_tag="OQP62_004043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein
                     SapD"
                     /protein_id="HCS1723453.1"
                     /translation="MPLLDIRNLTIEFKTSEGWVKAVDRVSMTLSEGEIRGLVGESGS
                     GKSLIAKAICGVAKDNWRVTADRMRFDDIDLLRLSSRERRKLVGHNVSMIFQEPQSCL
                     DPSERVGRQLMQNIPAWTYKGRWWQRLGWRKRRAIELLHRVGIKDHKDAMRSFPYELT
                     DGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHD
                     LQMLSQWADKINVLYCGQTVETAPSKDLVTTPHHPYTQALIRAIPDFGSAMPHKSRLN
                     TLPGAIPLLEQLPIGCRLGPRCPYAQRECIITPRLTGAKNHLYACHFPLNMERE"
     gene            2669..3475
                     /gene="sapF"
                     /locus_tag="OQP62_004044"
     CDS             2669..3475
                     /gene="sapF"
                     /locus_tag="OQP62_004044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein
                     SapF"
                     /protein_id="HCS1723454.1"
                     /translation="MVETLLEVRNLSKTFRYRTGWFRRQTVDAVKPLSFTLRERQTLA
                     IIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHYGDYSFRSQRIRMIFQDPSTSLN
                     PRQRISQILDFPLRLNTVLEPEQRRKQIVETMRMVGLLPDHVSYYPHMLAPGQKQRLG
                     LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHIS
                     DQVLVMHQGVVVERGSTADVLASPLHELTRRLIAGHFGEALTADAWRKDR"
     gene            complement(3491..4198)
                     /locus_tag="OQP62_004045"
     CDS             complement(3491..4198)
                     /locus_tag="OQP62_004045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001748430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HCS1723455.1"
                     /translation="MRYFFMAEPIRAMEGDLLGVEITTHFASSPARPLHPEFVISSWD
                     NSQKRRFLLDLLRTIAAKHGWFLRHGLFCIVNIDRGMAQLVLQDKDIRALLHAMLFVE
                     LQVAEHFSCQDNALIDPLIHALHKQPNPLWLGDLGVGNATAAPLVCGCFSGVKLDRSF
                     FISQIEKMTFPLLVKHIRRYCDKIVVGGQENTRYLPALKTAGIWATQGTLFPSVALEE
                     VETLLLGRRVNTLRESN"
     gene            complement(4665..>4901)
                     /locus_tag="OQP62_004046"
     CDS             complement(4665..>4901)
                     /locus_tag="OQP62_004046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723456.1"
                     /translation="LATRQLEEQIKARYLVKLKQSETEGNTEDIEYYKSLITELDELI
                     GEEEQAPAPGRRFKLAAPEEGTLVAKVLKDELKK"
BASE COUNT         1207 a         1267 c         1189 g         1238 t
ORIGIN      
        1 ctgagctaat aaatatcatt ccccctgctg acccgctgca gcagtttaag acgcaacacc
       61 tcatgccgga gtattccgat ctgtcttatt gtgaacctcc caaagactaa tgccgcaact
      121 gaacacaaac tccgccagat actttaagcc ggactattcc ccggatgccg ccgcgcgccg
      181 cttctacaaa tactgcaaca tcctgatcgc gccatacttc aaactagtgc cagacgccac
      241 tgtcggtctt aatgaccctg gcccaaattc cgtacagtgc taaaacttct cccagtagtc
      301 gtatgttctt ttacggttaa cgcttctgtt tttttcttct tctccagcac catctggcga
      361 cgaggatcga gtccctcagt taaccatgat ctaaagtact gacggcgttc cctggcatga
      421 gatagtgata tggttggata atcgccaatc gtcagttgag cagcgttccc gttccatctg
      481 tatcggtaaa agaatgttat actgccggat gtagagagcc tgacattgag accatgagcg
      541 tctgagatga ccttgatttg gtctcttttt ttgccaggag cctttcttaa ttttgtatcg
      601 gcaagcaatg tgtacactcc ataagaggat atacacatct gtgtatacat tttgcataaa
      661 ttgataacct tcacattaat gcaaagtaca caaaattgag acgcttacaa tccataacca
      721 attgatagtg cttgaaaatt tcaaaagaca taaagcatgg taaacaaaaa taaaacgagt
      781 aaatatgcct tacgatagcg tctacagcga aaagcgcccg ccaggcaccc tgcgcactgc
      841 ctggcgtaaa ttttatagcg acgcgcctgc gatggtgggt ctgtatggat gcgccggtct
      901 ggcgttgctg tgtatttttg gcggctggat cgcgccctat ggtatcgatc agcaatttct
      961 gggctatcag ctactgccac cctcctggtc acgctatggc gaagtctcct tttttctggg
     1021 gactgacgat ctggggcgcg atgtgctgag ccgcctgtta agcggcgcgg cgcccacggt
     1081 cggcggcgcg tttatcgtaa cgctggcggc tacgctatgt ggattagtcc tcggcgtagt
     1141 ggcaggcgcg acccacggtt tacgctctgc cgtactgaac catattctgg acacgctgct
     1201 ttccatccct tcgctcttgc tggcgattat cgttgtggca tttgccggcc cacatctgtc
     1261 acacgcgatg tttgccgtct ggctggccct gttgccgcga atggtacgtt ccgtctatag
     1321 catggtgcat gatgaactgg aaaaagagta cgtcattgct gcccgtctgg atggcgcgac
     1381 aacactgaat attctgtggt tcgccatttt accgaatatt accgccggtc tggtcaccga
     1441 aattacccgg gcgctgtcga tggcgattct ggacatcgcc gcgctgggat ttttagatct
     1501 cggcgcgcag cttccctctc ctgaatgggg cgccatgttg ggggatgcgc tggagttaat
     1561 ctatgtcgcg ccgtggaccg ttatgctacc cggcgcggcg ataacgctca gtgttttact
     1621 ggtaaacctg ctcggagatg ggattcgtcg tgcgattatt gcgggggtgg aataatgccg
     1681 ttactggata tccgcaatct caccattgaa tttaaaacca gcgaaggttg ggtaaaagcg
     1741 gtcgatcgcg tcagtatgac attaagcgaa ggtgaaattc gcggcctggt aggtgaatcg
     1801 ggttccggaa agagcttgat tgctaaagct atttgcggcg tcgcgaaaga caactggcga
     1861 gtcactgccg accgtatgcg ttttgatgat atcgatctgc tgcgcctctc ctctcgtgaa
     1921 cggcgtaagc tggtcgggca taatgtgtcg atgatcttcc aggagccgca gtcgtgcctt
     1981 gatccttccg aacgcgtcgg ccgccagtta atgcaaaata ttcccgcctg gacctataaa
     2041 ggccgctggt ggcagcgttt aggctggcgt aaacggcgtg caattgaatt actgcaccgg
     2101 gtgggaatta aagatcataa agacgcgatg cgcagttttc cctatgaact aaccgatggc
     2161 gagtgtcaga aagttatgat cgctatcgcg ctggcgaatc aaccgcgact cctgatcgct
     2221 gatgaaccca ccaactcaat ggaaccgacg acgcaggcgc aaatttttcg cctgttgacg
     2281 cgactgaatc aaaacagtaa taccaccatt ctgttgatta gccacgacct gcaaatgctg
     2341 agtcagtggg ctgacaaaat caacgtctta tactgcggcc agacggtaga aaccgcgcca
     2401 agtaaagatc tggtgacgac accacatcat ccttatacgc aggcgcttat ccgtgcgatt
     2461 ccggattttg gcagcgcgat gccgcataaa agccgtctga atacgctgcc gggcgcgatc
     2521 ccgctactgg agcagttacc gataggttgt cgtctggggc cgcgctgccc ttacgcgcaa
     2581 cgagaatgca ttatcacgcc acgcttaacc ggcgcgaaaa atcatctcta tgcctgtcat
     2641 tttccgctga atatggagag agagtgatat ggtggaaact ctgcttgaag tgcgcaacct
     2701 gagtaaaacc tttcgctacc gaacaggatg gtttcgccgc cagaccgtcg acgccgtgaa
     2761 accattaagc tttacgcttc gtgagcgtca gaccctggcc attatcggcg aaaacggttc
     2821 cggcaaatcc acgttggcaa agatgctggc cggcatgatt gaacccacca gcggcgagct
     2881 tcttattgac gatcatcccc tgcattacgg cgactattcg tttcgaagcc aacgtattcg
     2941 aatgattttt caggaccctt caacgtcact gaatccacgt caacgtattt cacagattct
     3001 tgacttcccc ctgcgcctta ataccgttct ggagccggaa cagcggcgca aacagattgt
     3061 cgagacgatg cgtatggtgg ggctattgcc cgatcacgtg agctactacc cgcatatgct
     3121 ggcgccggga cagaaacaac gtctgggtct ggcccgcgcg ctgattttac gcccaaaagt
     3181 cattatcgcg gacgaagcgc tggcttcgct tgatatgtcc atgcgctcgc agctcatcaa
     3241 tctgatgctt gaattgcagg aaaaacaagg catctcctat atctacgtca cgcagcatat
     3301 cggcatgatg aaacatatta gcgatcaggt attagtgatg catcaggggg tagtggttga
     3361 acgcggcagc accgccgatg tgctcgcctc tccgctacat gagcttaccc gccgtttaat
     3421 cgcaggccat tttggcgagg cgctgaccgc tgacgcatgg cgaaaggatc gctaagcgac
     3481 acaaataccc tcagttcgat tctctgaggg tgttcacgcg acggcccaac agcaatgttt
     3541 caacctcttc taacgcaacg gaaggaaata acgtgccctg ggttgcccaa atgcctgccg
     3601 tttttaacgc cggcaaatag cgtgtgtttt cctggccacc caccacgatc ttgtcacaat
     3661 aacgccggat atgtttgaca agcagcggaa acgtcatttt ttcaatttgt gagataaaaa
     3721 agctgcgatc aagttttacg ccgctaaaac acccgcaaac taatggcgca gcggttgcgt
     3781 tccctacgcc caggtcgccc agccataatg gattaggttg cttatgaagc gcgtgtatta
     3841 aaggatcgat taaggcgtta tcttgacatg aaaaatgttc agcgacctgc aactccacaa
     3901 atagcatggc gtgtagtaat gcgcgaatat ctttgtcctg aaggacaagc tgcgccatac
     3961 cccgatcgat atttacgata cagaacaggc cgtggcgtag aaaccagcca tgtttggccg
     4021 cgattgtccg caacagatca agcagaaaac ggcgcttctg cgaattgtcc catgacgaga
     4081 taacaaactc agggtgtagc ggacgagcgg gcgacgatgc aaaatgggta gtgatttcga
     4141 cacccagtaa atccccctcc attgccctta tcggctctgc cataaaaaaa tagcgcatgt
     4201 gaccactcca cttgatctta actccctgat aatgcgcttt taacgcaaat caatcagtaa
     4261 aaacgatcaa tatctaaaaa atgatcgaaa aaaacaatat atattaactt catgataact
     4321 tgctaatttt atgttttgag aatgttcttc tattgctata agtaaattta catactacgc
     4381 cgaacaacgc taatacgacg gcatgagacc atccgtaaag ccaggttttt cttgtcagga
     4441 agaggggaaa aatcaaggcg agttaatagt gttgcaccat cgcgtggcat ttcacccact
     4501 atggcagcgc ggcatcgcca accctagtgg cgagttgcat ctccgctata ggctgtccag
     4561 atcccccgaa cgacctttaa gcgaatagca actctcaata attgattggt aaatctgtag
     4621 cgaatgtgcc cccggcgatt cgcagaaaag aacggaacta aatgctattt ttttaattca
     4681 tcctttaata ccttagccac aagagtccct tcctccggcg cggctagttt aaaacgtctt
     4741 cctggcgcag gtgcctgttc ttcctctccg attaactcat caagttctgt aataagtgac
     4801 ttataatatt caatatcttc agtatttcct tcggtctcgg actgctttaa ttttaccagg
     4861 taacgggcct taatttgctc ttccagttgc cttgttgcaa g
//
LOCUS       DAJVSD010000285         4845 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.285, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000285 DAJVSD010000000
VERSION     DAJVSD010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4845
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.285"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(55..1206)
                     /locus_tag="OQP62_004047"
     CDS             complement(55..1206)
                     /locus_tag="OQP62_004047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001685958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1723457.1"
                     /translation="MYLREVFYYPWNEYFSLTNTQSGMLMSWLGFVGIISGAVSGIIV
                     DRFKNPKSILTIAYLTMAALAIWQSFRPSYQAMFIIVGFMSLVGNGLFLVSMTKIARL
                     LASDNEQGRYFGFLESGRGIAGTVLTLCAVAIVGLHGSSAVSIGFILRFDAAIYIILG
                     FTSYYLFPKGVSAIENAAPKKMSDLISLLKSVKLWLAAFIISCVIFVYQGGAYLVPYL
                     SDAYGMTPDQTAVIGMIRAYFLAFIISPFAGLLADKIGSSLKVMASFFILGALITASF
                     IFIPHDSRFLILLITLVLLLGALTFGMRGIMYAQVNEIRIPKVFTGTAMGILICIGFS
                     PEAYVHLIFGYLLDTYKEFAYTLMFATIAVVLFAGALCSGLLYRINKKV"
     gene            complement(1350..1997)
                     /locus_tag="OQP62_004048"
     CDS             complement(1350..1997)
                     /locus_tag="OQP62_004048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000798751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HCS1723458.1"
                     /translation="MKNTCLEPYEFLIDFLADYFGENTEVVLHNLSDLESSIHKIRNG
                     HISGRSVGDPITDLVVRAMKNNDSEVHYQCNYLSKTRDGRRLKCATFFIRNKQGEIVG
                     ALCLNTVVEDLIALNDKLSHFLSIFVGQTDNNNGTQLDEHIGLTIPEMVDLKINNVIN
                     IENINPESLNAENKSHIISLLNDEGVFLLKGAVTKVAKKLNISEPTVYKYIQKLK"
     gene            complement(2036..2416)
                     /locus_tag="OQP62_004049"
     CDS             complement(2036..2416)
                     /locus_tag="OQP62_004049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000658719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HCS1723459.1"
                     /translation="MKEIIFTETAPAAIGSYSQGNAMGNLIFTSGQLPINADSGKIET
                     DDIQEQTRQSLLNLLAVVKMAGGDTDTVLKTTCFLSDMADFAAFNDVYASFFKINPPA
                     RSCFAVKTLPMGARVEIEAVAFRQ"
     gene            complement(2426..3592)
                     /locus_tag="OQP62_004050"
     CDS             complement(2426..3592)
                     /locus_tag="OQP62_004050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000872633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HCS1723460.1"
                     /translation="MKYDFNEIYQRIASEKWEYDSVINGFPVIPMSVADTDLVSPVEV
                     RQALIEVCNRREFGYPAYHDDFKDVLASWYDRYYDWRPDTADIIETPPLLMTMGAFIR
                     GMTQCNESVVVMTPVYHSFARTIRENHRAVTECDLLRDENNHYTIDFEKLEDTCSRPE
                     NKILIFCNPHNPVGRCWTEEEVRKVAAIAQKTGTILISDEIHADFVYDEKCYTPVMKA
                     AENLNGIIVFLSGGKLFNIGGIFSSYVFTADPVFKKQMAVVLKELHFQPTAFAHEAAY
                     AGYKYYHDYREEVVNHIRKMQIKLVNGLNNMPYPVKANLPEATYLVWADFNDTGWSGD
                     RIQEFLVQDAGLGFNRGDQFGVAGTGFARINCGVPESRIDEALSRLEKAFSKYF"
     gene            complement(3608..>4845)
                     /locus_tag="OQP62_004051"
     CDS             complement(3608..>4845)
                     /locus_tag="OQP62_004051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000858309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1723461.1"
                     /translation="GTIFKSMYLREVFYYPWNEFMGVNNTDSGLLMSWLGFVGIVSSS
                     IAGVIIDKVNNTRLIISFTFLAVGVTTLWQSTAPGLATQYVIIGILSFLANGLFLVSM
                     VRATRLIGNASDQGKLFGFLESGRGIAGSAISAVAVAWFAMSATEVEGIGSVLHAYGF
                     LYLALGVLMWFAMPRDNHNSASGEEKAKEKISVHDILAVMKVKEVWFAAFSIFATISF
                     YQGSSYLVPYLSDVYGMTAEHAGIIGMIRAYVLAILIAPVVGLLADKVGSAIKVMNWL
                     FIAGVIGVAMFLVIPQDPAMVWVLIGTLMIVGSINFALRGIMYAQIEEMKVPVRLTGT
                     VMGIMATVGFSPEMFIHALFGYWLDAYKVQGYTYMFIFMGAMFALAVFTSLLLLRNAK
                     TAFKKMDGKPADTFRTAAE"
BASE COUNT         1468 a         1127 c          986 g         1264 t
ORIGIN      
        1 gacagggcct tctggtagta tgtagtcgat atttacactg tttacaacgg ggagtcatac
       61 tttcttatta atcctgtaaa gcaaaccact gcacagtgcg ccagcaaaaa gaacaactgc
      121 aatagtggca aacatcagcg tatatgcaaa ttctttatac gtatcaagaa ggtatccgaa
      181 gataagatgg acataagctt ccgggctgaa tccgatgcag attaatatcc ccattgcggt
      241 cccggtaaac actttcggta tgcgaatttc atttacctgc gcatacatta taccgcgcat
      301 gccaaacgta agcgctccca gtaataaaac cagagtaata agcaggatca gaaatcgtga
      361 gtcatgagga ataaatataa aagatgcagt tatcaatgca ccgagaataa agaagctggc
      421 cataactttc agggaagaac caatcttatc tgcaagtagg ccagcaaaag gcgaaataat
      481 aaaagcgaga aaatatgccc taatcatccc gataacggca gtttggtcgg gagtcattcc
      541 ataggcatcg gagaggtatg gtaccagata agctccgccc tggtaaacaa aaataacaca
      601 gctgataatg aatgctgcca gccaaagttt tacacttttg agtagtgaaa taagatccga
      661 cattttttta ggtgccgcat tttcaatagc actaacacct ttcggaaata aataataaga
      721 ggtgaatccc agaataatat aaatggctgc gtcaaatcgt aaaataaaac caatgctgac
      781 agcactggag ccatgcagac caacaatagc cacggcacat aacgtcagaa cagtgccggc
      841 aattccacga ccggactcca gaaatccaaa ataccgcccc tgctcattgt ctgatgcaag
      901 gagtctggca atttttgtca tggaaaccag gaacagtcca ttaccgacta aggacataaa
      961 tccgacgata ataaacatgg cctgatagga aggccggaag gactgccaga tggcaagggc
     1021 cgccattgtg agataggcaa tggtaagaat gcttttagga tttttgaaac ggtcaacgat
     1081 gatgcctgaa acagcacctg atataatgcc tacaaacccg agccagctca ttaacatgcc
     1141 cgattgtgta tttgtcagtg aaaagtattc attccacgga tagtagaata cttcacgcaa
     1201 atacatagcc ttgaatattg ttcccccacc gactgccaga agaataaaaa aatcaggtta
     1261 tgccttttaa tcgatttgtc ttctgcatgt tccatatgtc cgcctgtata actagacgtt
     1321 attgtagatt gatccgttag tgtcttgtgt tattttaatt tttgtatgta tttataaaca
     1381 gtgggttcag atatgttaag ttttttggct actttcgtta ctgccccttt aagcagaaat
     1441 acgccttcat catttagtaa tgaaataata tggcttttat tttcagcatt cagtgactct
     1501 ggattaatat tttcaatatt gattacatta ttaattttga gatcaaccat ttcaggaatg
     1561 gtcagtccaa tatgttcatc aagctgagtg ccgttattat tgtcagtctg cccgacaaaa
     1621 atgcttaaaa aatgactaag tttatcattc agggcaatta aatcttcgac gacggtattc
     1681 agacatagtg caccaacaat ttctccctgc ttattccgga taaaaaaagt ggcacactta
     1741 agccgtctgc catcgcgtgt cttgctgaga taattacact ggtaatgtac ctcactgtca
     1801 ttgttcttca tggcacggac taccagatcg gtgatgggat ctccgacaga gcgaccgctg
     1861 atatgtccat ttctgatttt atgtatagaa gactcaagat cagaaagatt gtgcagaaca
     1921 acttccgtgt tttcgccaaa ataatcggcc aggaaatcga tcaaaaattc atagggttca
     1981 agacaagtgt ttttcatggt taatctggtt gccacctcag tggcaaccac ctttgttatt
     2041 gacgaaatgc cacagcttca atctcaactc tggcacccat aggaagtgtt tttacagcaa
     2101 aacagctgcg tgccggcgga tttatcttaa aaaagctggc atagacatcg ttgaacgcag
     2161 caaaatcagc catatcactc aagaaacagg tcgttttcag taccgtatca gtatcaccgc
     2221 ctgccatctt aactacagcc agaagattaa gcagtgactg acgggtctgt tcctgaatat
     2281 catcagtttc aattttgcca ctgtcagcgt taatgggcaa ttgtccggag gtaaaaatta
     2341 aattacccat cgcattgccc tgactgtatg agccaattgc tgccggtgct gtttctgtaa
     2401 aaataatctc tttcacttct gttccttaaa aatacttact gaatgccttt tccagacgac
     2461 tcagtgcttc atcaatacgt gactccggaa caccacagtt aattcgggca aatccggtac
     2521 cggcaacacc aaactgatct ccccggttaa atccgagtcc cgcatcctgc actaaaaatt
     2581 cctgaatgcg atcacctgac cagcccgtat cattaaagtc ggcccataca agataagtgg
     2641 cttccggcag attggctttt accggatatg gcatgttatt gagcccgtta accagtttaa
     2701 tctgcatttt acggatatga ttcaccacct cttcacgata gtcatggtaa tatttatatc
     2761 cggcataggc ggcttcatgc gcgaacgcag tgggctgaaa atgtaattct ttcaggacaa
     2821 ctgccatctg ttttttaaat acaggatcgg ccgtgaagac ataggaacta aaaataccgc
     2881 caatgttaaa cagcttccct ccggataaaa aaacgataat gccatttaaa ttttccgcag
     2941 ctttcatgac cggcgtatag catttttcgt catagacaaa atctgcatga atttcgtcag
     3001 aaatcaggat tgttcctgtt ttctgggcaa ttgcggcgac tttcctgact tcctcttcag
     3061 tccagcaacg acctaccgga ttatgagggt tacagaaaat cagaatctta ttctccgggc
     3121 gtgaacaggt atcttccagc ttttcaaaat caatagtgta atgattgttt tcatcacgca
     3181 gcagatcaca ctcagttaca gcacggtggt tttcacggat ggttctggca aaagaatgat
     3241 agaccggtgt cataaccaca acggattcat tacactgtgt cattcccctg ataaaagcgc
     3301 ccatcgtcat cagtaaaggc ggtgtttcaa taatatcagc cgtatccggc cgccagtcat
     3361 aatatcgatc ataccaggat gccagcacat ccttaaaatc atcatgatag gccggatatc
     3421 cgaattctct gcggttacag acttcaatca gtgcctgacg aacctccacg ggagaaacta
     3481 aatcggtatc tgcaacagac ataggtatta ctggaaatcc attaatgaca ctgtcatatt
     3541 cccatttttc tgatgctatt ctctgataga tttcattaaa atcgtatttc attttatttt
     3601 ccttaattta ttcagccgca gtccggaaag tatctgccgg tttaccatcc attttcttaa
     3661 atgccgtttt ggcattgcgg agaagtaaaa gtgaagtgaa tacagcgaga gcaaacatgg
     3721 cacccatgaa gataaacatg taggtgtaac cctgtacttt atatgcatca agccagtacc
     3781 cgaataacgc atggataaac atttccggag agaatcccac agtggccatg atccccataa
     3841 cggtaccggt cagacgaaca ggaaccttca tttcctcaat ttgcgcatac atgatcccgc
     3901 gcagagcaaa gttaatggag cctacaatca tcagggtgcc gatcaggacc cataccatag
     3961 ccggatcctg tgggatcacc aggaacatgg cgacaccaat caccccggca ataaacagcc
     4021 aattcatcac cttaatcgct gagccgactt tgtctgcgag cagacccaca accggtgcaa
     4081 tcaggatagc gaggacataa gcacggatca taccgataat tccggcatgt tcggcggtca
     4141 ttccgtagac atcagacaga taaggaacca gatatgagga cccctgatag aaggagatgg
     4201 ttgcaaagat ggagaaagct gcaaaccaga cttccttaac cttcatgaca gccagaatat
     4261 cgtgtacaga tattttttcc ttggcctttt cttctccgga agcagaatta tggttatcac
     4321 ggggcatggc gaaccacatc agaacaccca gcgctaggta gagaaagccg tatgcatgta
     4381 gcacactgcc aatcccttcc acttcggttg cagacatggc gaaccatgct acggcaacgg
     4441 cagagatggc tgacccagcg ataccacgtc cggactccag gaaaccaaac agcttcccct
     4501 ggtcactggc attaccaatc aggcgggttg cgcgcaccat cgatactagg aaaagaccat
     4561 ttgcgaggaa agatagtatg ccgatgatga catactgcgt agccagaccc ggtgctgttg
     4621 actgccataa tgtggttacg cccacagcca gaaaggtaaa agaaataatc agtcgggtat
     4681 tgttcacctt atcgataatc accccagcaa ttgaagatga aacaatcccc acaaacccca
     4741 gccaactcat cagcaggcct gaatccgtgt tattcactcc catgaattca ttccaggggt
     4801 aataaaatac ttccctgagg tacatcgatt taaaaatggt ccctc
//
LOCUS       DAJVSD010000286         4835 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.286, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000286 DAJVSD010000000
VERSION     DAJVSD010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4835)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4835)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4835
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.286"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            56..1051
                     /locus_tag="OQP62_004052"
     CDS             56..1051
                     /locus_tag="OQP62_004052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013196267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS1723462.1"
                     /translation="MSQAARTFTDQLGRQVTVPDTLDRVVVLQHQTLNLLVQMNATDK
                     IVGVMANWKQQLGDGYARLAPELAQKASLGDLTHVDPEKLVALRPQVVFVTNYAPQEM
                     IDKISRLGIPVVAISLRHDVAGEQAKMNPTLADEEQAYNRGLREGITLIGDIVNKPQE
                     AKALIEAMNKGRKMVSDRLQSVPENERVRAYMANPELTTYGSGKYTGLMMAHAGALNV
                     AASSAKGFKQVTMEQVIAWDPQVIFVQNRYPKVVNEILHNPQWQVIDAVKHHRVYLMP
                     DYAKAWGYPMPEAVGIGELWMAKKLYPEKFHDIDMQKAANDWYQRFYRTDYQGVQ"
     gene            1051..1761
                     /locus_tag="OQP62_004053"
     CDS             1051..1761
                     /locus_tag="OQP62_004053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1723463.1"
                     /translation="MRILAAGSLRVVWPQLMTAFQADAVCDFGPAGLLRERIEAGEAC
                     DFFASANLAHPQALLESGRALRVAPFTTNRLCLSVRAQAMREGEDWLSLLTRRDLRIG
                     TSTAGCDPSGDYTQQLFSRMGKEGEAIRKRAVALVGGRQTLPLPAGRLAAEWLINHDY
                     TDIFIGYASYAPRLRQVNSLRVVDIPEPYNPVAEYGFACLSEQGKTLADFLLSARARL
                     ILMQHGFSEAPHMTHSQN"
     gene            complement(1829..2695)
                     /gene="yghU"
                     /locus_tag="OQP62_004054"
     CDS             complement(1829..2695)
                     /gene="yghU"
                     /locus_tag="OQP62_004054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HCS1723464.1"
                     /translation="MADNTYQPAKVWTWDKSGSGAFANINRPVSGPTHDKTLPVGKHP
                     LQLYSLGTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGEGDQFSSGFVDINPNSKIP
                     ALRDNSYNPPIRVFESGAILVYLADKFGHFLPQDLAKRTETLNWLFWLQGAAPFLGGG
                     FGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAHHPYVAGEEYTIADMAIWPWFGN
                     VVLGNVYDAAEFLDAGSYQNVQRWAKQVAERPAVKRGRIVNRTNGPLNERLHERHDAS
                     DFENHTEDKRQS"
     gene            2922..4778
                     /gene="gss"
                     /locus_tag="OQP62_004055"
     CDS             2922..4778
                     /gene="gss"
                     /locus_tag="OQP62_004055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutathionylspermidine
                     amidase/synthase"
                     /protein_id="HCS1723465.1"
                     /translation="MSKGTTSQDAPFGTLLGYAPGGVAIYSSDYNSLDPWDDDDAAFR
                     SYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQA
                     FPNGSPRAPEAGALLIWQKGGEFNETGHVAIITQLLDNKIRIAEQNVIHTPLPPGQQW
                     TRELEMVVENGCYTLRDTFDDTTILGWMIQTDDTQYSLSQPDIANQSLAIRGARLPEK
                     GQFDGQWLDERDPLQKAYVQANGHVINQDPYQYFTITESAEQELIKATNELHLMYLHA
                     TDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNADS
                     ASCHTEAGLILEKWAEQGYTGKGHNPAEGLINELAGAWKHSKARPFVHIMQDDDIEED
                     YHAQFMQQALHQAGFASKILRGLGELRWDDAGQLIDGDGRLVNCVWKTWAWETAMEQI
                     REVSETEYAAVPIRTGHPENEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLFP
                     HHRYLLDTDFTVNDELVQTGYAVKPIAGRCGSNIDLVSHQEELLDKTSGKFATQKNIY
                     QQLWCLPKVAGKYIQVCTFTVGGNYGGTCLRGDDSLVIKKESDIEPLIVIKA"
BASE COUNT         1101 a         1226 c         1400 g         1108 t
ORIGIN      
        1 gaataaattt ttgcgccagc tctctctgct ggcgttgctt ttttgctggc cgttaatgtc
       61 acaggcggcg cgtactttta ccgatcaact tggccgccag gtcacggttc ccgataccct
      121 cgacagagtg gtggtgctcc agcatcaaac gctcaatctc cttgtacaga tgaatgccac
      181 tgacaaaatc gttggggtca tggcgaactg gaaacagcaa ttaggcgacg gctatgcgcg
      241 tctggcgccg gaactggcgc aaaaagcctc gctgggcgat ctaacgcacg ttgatcctga
      301 aaaactggtg gcgctgcgcc cgcaggtggt gtttgtcacg aattacgctc cgcaggagat
      361 gatcgacaag atcagccgtc ttggcattcc ggtggtggcg atttcgctgc gccatgatgt
      421 tgctggcgag caggctaaaa tgaacccgac cctggccgat gaagagcagg cttataatcg
      481 cgggctgcgt gaaggaataa cgctgattgg cgatatcgtc aataaaccgc aggaggcgaa
      541 agcgctgatt gaggcgatga ataaaggtcg caagatggtc agcgaccgtt tgcagtcggt
      601 tcctgaaaat gagcgagttc gcgcctatat ggcgaatccg gagctgacca cctacggttc
      661 cggtaaatac accggtctga tgatggccca tgcgggggcg ctgaatgtag cggcatcctc
      721 ggcgaaaggc tttaagcagg tgacaatgga gcaggtgatc gcctgggatc cacaagtaat
      781 ctttgtccag aatcgctatc caaaggtcgt caatgagatc ctgcacaatc cccagtggca
      841 ggtcattgac gcggtgaagc atcatcgggt ttacctgatg ccggattatg ccaaagcctg
      901 gggatatccg atgccggagg cggtgggaat cggcgaacta tggatggcga aaaaactcta
      961 tccggaaaaa ttccacgata ttgacatgca aaaggccgct aacgactggt atcaacgttt
     1021 ttaccgtact gactatcagg gcgtacagtg atgcgaatac tggctgcggg gagcttgcgc
     1081 gtcgtctggc cgcagctaat gacggcgttt caggcggatg cggtatgtga tttcggtccg
     1141 gcggggctgt tacgtgaacg catcgaagcg ggcgaagcat gcgacttttt tgcttcggcg
     1201 aacctggcgc atccgcaggc gctgctggaa agcgggcggg cactgcgggt cgcgcctttt
     1261 acgacgaacc gtttgtgtct gagcgtgcgg gcacaggcga tgcgtgaagg cgaggactgg
     1321 ctgtcgctat taacccggcg ggatctgcgg atcggcacct caacagcagg ttgcgatcct
     1381 tccggcgatt atacgcagca gcttttttcg cggatgggca aggagggcga agcgatccga
     1441 aaacgcgcgg tagcgctggt tggcggcaga cagactttgc cgttaccggc gggccggctg
     1501 gcggcggaat ggctcatcaa tcatgattac accgatatct ttatcggcta tgccagctat
     1561 gctcccaggc tacggcaggt taattcgctg cgagtggttg atatcccgga accttataat
     1621 cccgtggctg aatatggctt tgcctgcctg agcgagcagg gaaaaacgct tgccgacttt
     1681 ttactgtcag cacgggcgag gttgattctc atgcaacatg ggtttagtga agcgccgcat
     1741 atgacgcact cgcagaactg ataagcgaag cgtcagcagg gaataccatg ccggatgacg
     1801 acattactac ctcatccggc attatggttt aactttgacg tttatcttcg gtatggtttt
     1861 cgaagtcgct ggcgtcatgg cgttcatgaa gccgttcgtt caatgggccg ttggtccggt
     1921 tgacaatgcg cccccgcttt accgccggac gttcggctac ctgtttcgcc cagcgttgta
     1981 cgttttgata acttccggca tccagaaact ccgctgcatc atagacattc cccagcacca
     2041 cgttgccgaa ccacggccag atggccatat cggcaatagt gtactcttct cccgcgacat
     2101 acgggtggtg agctaactgc ttatccagca cgtccagcag acgcttggct tccatggtga
     2161 agcgattaat ggcgtactca atttttaccg gcgcataatg atagaagtga ccgaaaccgc
     2221 cgccgaggaa cggcgccgcg ccctgtagcc agaacaacca gttaagggtt tctgtgcgct
     2281 tagccagatc ctgcggcagg aaatggccaa acttatccgc cagataaaca agaattgcgc
     2341 ccgactcaaa aacccgaatc ggcgggttgt atgagttatc gcgcagcgcc ggaatttttg
     2401 agttcggatt gatgtcaaca aagccgctgg agaactgatc gccctcgccg atgcgaatca
     2461 accaggcgtc atattcggcg ccggtcacgc ccagcgccag gagttcttcc agcataatgg
     2521 tcactttctg gccgttaggc gtccccagcg aatagagctg taacggatgt ttgccgacgg
     2581 gcagcgtttt gtcgtgcgtc gggccggaaa ccgggcgatt aatgttagcg aacgcgccgc
     2641 tgccggattt atcccacgtc cagacttttg cgggttgata agtattatct gccatattga
     2701 cctgccttca cagtggtggt gttgaagcag tgtagcagct tgctaaccgg acatttaacc
     2761 gattgggaca ttccgacgag tgaaatttta accttctggc ctcagtgtgc cttattgagg
     2821 tgtatgatta tgtcgacctc tgtccggtta gtgtcacaga gcagacaatc agagcgaaat
     2881 cacgccaggc tgctcaggcg gtcttgtttt gaggtaagtg catgagcaaa ggaaccacca
     2941 gtcaggatgc ccccttcggg acattattgg gttacgcccc cggcggcgta gcgatctact
     3001 cttcagatta caattccctc gatccgtggg acgacgacga cgcagctttt cgtagctaca
     3061 tcgacgatga atacatgggg cataaatggc agtgcgtgga atttgcccgc cgttttctct
     3121 ttctgaatta tggcgttgtt tttactgacg tcggcatggc ctgggaaatt ttctcgctgc
     3181 gttttctgcg cgaggtcgtg aatgacaata ttttgccttt gcaggccttc ccgaacggtt
     3241 cgccgcgcgc gccggaggcc ggggcgttgc tcatctggca aaagggcggc gagtttaacg
     3301 aaaccgggca cgtcgcgatt atcacccaac tcctggataa caaaattcgc attgctgagc
     3361 aaaacgttat ccacacgcca ttgccgccag ggcagcagtg gactcgcgaa ctggaaatgg
     3421 tcgtagaaaa cgggtgttac accctgcgcg acacctttga tgacacgacg attttaggct
     3481 ggatgatcca gaccgacgac acgcaataca gtttgtcaca gcctgacatc gcgaatcagt
     3541 cgctggcgat tcgcggcgca aggctgccag agaaaggtca gtttgacggt cagtggctgg
     3601 atgagcgcga tccgttacaa aaagcctatg tacaggcgaa cggacacgtt atcaatcagg
     3661 acccgtacca gtattttacc atcaccgaga gcgccgaaca ggagcttatc aaagcgacca
     3721 atgagttgca tttgatgtac ctgcacgcca cggacaaagt tttaaaagac gataatctgc
     3781 tggcgctatt cgatatcccc aaaattcttt ggccgcgcct gcgtctctcc tggcagcgcc
     3841 gtcgtcacca tatgatcacc ggtcgtatgg atttctgcat ggatgaacgc gggctgaaag
     3901 tctatgaata caatgccgat tccgcatcat gccataccga agcgggatta attctcgaaa
     3961 aatgggctga gcagggctat accggtaaag ggcataaccc ggcggagggc ttaattaacg
     4021 agctggcagg cgcctggaaa cacagtaaag cgcgtccttt cgtccatatc atgcaggatg
     4081 atgatatcga ggaggactat cacgcgcagt ttatgcagca ggcgctgcat caggccggtt
     4141 tcgcgagcaa aattctccgc gggctgggcg agttgcgctg ggatgacgcc gggcagttga
     4201 tcgatggcga cggacggctg gtgaattgtg tctggaaaac ctgggcgtgg gaaacggcaa
     4261 tggagcagat acgcgaagtc agcgagacgg agtatgccgc agtgcctatt cgtaccgggc
     4321 acccggaaaa tgaagtccgg ctgattgatg tattactgcg cccggaagtg ttggtgtttg
     4381 aaccgctgtg gacggtgatc ccgggtaaca aagcgatcct gcccatcctg tggtcgctct
     4441 tcccacatca tcgctatttg ctcgacacgg attttaccgt taacgatgag ctggtgcaga
     4501 ccggctatgc ggtaaaaccg attgccggac gttgcggtag taatattgat ttggtgagcc
     4561 atcaggaaga actcctggat aaaaccagcg gcaagttcgc cacgcagaaa aatatctatc
     4621 agcagttgtg gtgcctgccg aaggtcgccg ggaagtatat tcaggtctgt acgtttaccg
     4681 tgggcggtaa ctacggcggt acgtgcctgc gcggcgatga ttcattagtc attaaaaaag
     4741 agagcgatat tgaaccgtta atcgtcatca aagcgtaacg gggtcattct cgtcgggata
     4801 tcggcgttgg cgccgatatc ccgcctgttg tgttt
//
LOCUS       DAJVSD010000287         4806 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.287, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000287 DAJVSD010000000
VERSION     DAJVSD010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4806)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4806)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4806
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.287"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..129
                     /locus_tag="OQP62_004056"
     CDS             <1..129
                     /locus_tag="OQP62_004056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723466.1"
                     /translation="KIFHIQYYSASINRENLQRLKKKLFLLSICWLKLHVHNIANR"
     gene            104..403
                     /locus_tag="OQP62_004057"
     CDS             104..403
                     /locus_tag="OQP62_004057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723467.1"
                     /translation="MSITSLIGEVNHLDEYSGFLQNLYLSGGRRIAIVLAVRPGVSGW
                     MRRTLHQLVYCTVGPVPLDSLICQFGPGECSKSSGTSLPCGFRTSPAGDSGGKIA"
     gene            521..1309
                     /gene="fabI"
                     /locus_tag="OQP62_004058"
     CDS             521..1309
                     /gene="fabI"
                     /locus_tag="OQP62_004058"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HCS1723468.1"
                     /translation="MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL
                     KGRVEEFAAQLGSSIVLPCDVAEDASIDAMFAELGNVWPKFDGFVHSIGFAPGDQLDG
                     DYVNAVTREGFKIAHDISSYSFVAMAKACRTMLNPGSALLTLSYLGAERAIPNYNVMG
                     LAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR
                     TVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAMNELELK"
     gene            1509..2429
                     /locus_tag="OQP62_004059"
     CDS             1509..2429
                     /locus_tag="OQP62_004059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HCS1723469.1"
                     /translation="MEQCRKAGKSHWYHETQSTMSSQTPLSLMPEAAYVNDRFLLDLA
                     VAETALTPFESWLKPARQLADVLFPRTVLNDRLHTFSAYERMSTALTAAQVFGVQRLC
                     RHYAARLAPLPGPDASRESNQRLAQITQYARQLAGSPSVINTRAREQLAEVGLTARDT
                     VLINQIIGFIGFQARVAAIFQAFCRLPVRELPGQEMQRFARAARFQNPQTTWRPAASL
                     VEYPLAHTKVRRQYSSSQCQIMAPVLMRDPSSFALLERILTSTLHTASPPSLLPLITL
                     LTSRINGSAACFNEQATQPGAWRRAVITLR"
     gene            2731..4665
                     /locus_tag="OQP62_004060"
     CDS             2731..4665
                     /locus_tag="OQP62_004060"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exoribonuclease II"
                     /protein_id="HCS1723470.1"
                     /translation="MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSY
                     FIPPPQMKKVMHGDRIVAVIHTEKERESAEPEELIEPFLTRFVGKVQGKNDRLSIVPD
                     HPLLKDAIPCRAARGVQHEFKEGDWAVAEMRRHPLKGDRSFYADLTQYITFADDHFVP
                     WWVTLARHNLEKEAPNGVATEMLDEGLERQDLTALNFVTIDSASTEDMDDALYAEELA
                     DGRLQLTVAIADPTAWIAEGSKLDNAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN
                     EVRPALACRMIIAADGTIDDDIAFFAATIESKAKLVYDNVSDWLENNSTWQPENEGIA
                     QQIRLLHRICLSRSEWRHHHALVFKDRPDYRFVLGEKGEVLDIVAEPRRIANRIVEES
                     MIAANLCAARVLRDKLGFGIYNVHTGFDPANADALAALLKTHGLHVDAEEVLTLEGFC
                     KLRRELDAQPSGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINH
                     RLLKAVIKGEAIARPQEDITQQMAERRRLNRMAERDVGDWLYARFLNDKAGTNTRFAA
                     EIIDVSRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVI
                     DVTIAEVRMETRSIIARPAA"
BASE COUNT         1091 a         1298 c         1259 g         1158 t
ORIGIN      
        1 aaaatttttc atattcagta ttactctgca tcaataaata gagaaaacct tcagcgccta
       61 aaaaagaaat tatttttgtt aagcatttgc tggttaaaat tacatgtcca taacatcgct
      121 aataggtgag gtaaaccatt tggatgaata ttcaggcttc ctacagaacc tttatttgtc
      181 tggtggaagg cgcatcgcta tcgtacttgc tgtccgtccc ggtgtctctg gttggatgag
      241 gcgaacctta caccagctgg tatactgcac cgtagggcct gtcccattag actctttgat
      301 ttgccagttt ggccctgggg agtgctcaaa atcctcaggg acttcgttac cgtgtggttt
      361 tagaacgtca cctgccggag atagcggcgg aaaaatagcg tgacacacgg ggccaggagt
      421 gggatataat ttcagactaa tttcgaataa tgttgaaaag ttgctgttaa ccattgttcg
      481 taaaagcaaa aaataagcaa tgactataag gattaaagct atgggttttc tttccggtaa
      541 gcgcattctg gtcactggcg tggccagtaa actgtccatc gcctacggta tcgcacaggc
      601 gatgcaccgc gaaggagctg aactggcgtt cacctaccag aacgacaaac tgaaaggccg
      661 cgtagaagaa tttgctgccc agctgggttc cagcatcgtt ttaccgtgtg atgtcgctga
      721 agatgccagc attgacgcta tgtttgcgga gctgggtaac gtttggccga aatttgacgg
      781 tttcgttcac tcgatcggtt tcgcgcctgg cgatcagctg gacggcgatt atgttaatgc
      841 ggttacccgc gaaggcttta aaatcgctca cgatattagc tcttacagtt ttgttgccat
      901 ggcgaaagcc tgccgcacca tgctgaatcc gggttctgcg ctgttgacct tgtcttatct
      961 gggagcggag cgcgccatcc cgaactacaa tgtcatgggt ctggcgaaag cctctctgga
     1021 agccaacgtg cgttatatgg caaacgctat gggaccggaa ggggttcgcg tcaacgccat
     1081 ctctgcgggc ccgatccgca cgctggcggc gtccggtatt aaagacttcc gtaaaatgct
     1141 ggcgcattgt gaagccgtta cgccaattcg tcgcaccgtg accattgaag atgtgggtaa
     1201 ctcagcggcg tttctgtgtt ccgatctctc ggcaggcatt tctggcgaag tcgtccatgt
     1261 tgacggcggg ttcagcattg cggcaatgaa tgaactggaa ctgaagtaag cgcattaagt
     1321 ttattagcgg gcggcacggc tgtgctgccc cattcccctc actcaccgct catctcgtta
     1381 tatagcgttc tgatatttgt tatcacctaa caatctttca tccctttccc gcatacgcca
     1441 ggataatcca gcataaacga tccgacgctg aatcattatc gatcgccatt tcatcctcgg
     1501 gaaaccctat ggaacaatgc cgaaaagcgg gtaaaagcca ctggtatcat gaaacacaat
     1561 ccactatgtc gtcacaaact ccgctttcgc tgatgccgga agccgcgtat gttaacgatc
     1621 gatttttact ggatttagcg gtagcagaaa ccgcgttgac gccttttgag tcatggttaa
     1681 agccagctcg ccagttggcg gatgtcttat ttccccgcac ggttctcaac gaccggcttc
     1741 atacgtttag cgcctatgaa cgtatgagca ccgcccttac cgccgctcag gtatttgggg
     1801 ttcagcgttt gtgccgccat tatgccgcac gtctggcgcc gctacccggc cctgacgcct
     1861 caagagaaag caatcaacgg ctggcgcaaa ttacgcaata cgctcgtcag cttgccggct
     1921 ccccctccgt tatcaatacg cgagcccgcg aacagcttgc agaggtggga ttaaccgccc
     1981 gggataccgt actcatcaat cagatcattg ggtttatcgg ttttcaggcg cgagtagcgg
     2041 cgatatttca ggcgttttgc cgtctgcccg tgcgcgagct gcccggccag gagatgcagc
     2101 gctttgccag ggccgcgcgg tttcaaaacc cccagacgac atggcggccc gccgccagtc
     2161 tggtagaata tcctctcgcc cataccaaag ttcggcggca atattcgtct tcacaatgcc
     2221 aaataatggc gccggtactc atgcgcgatc cgtcttcatt cgcgttactc gaacgcatac
     2281 tgaccagcac attacacact gcgtcgcccc cttctttact tccacttatc acgctcctca
     2341 catcacgtat caacggcagc gccgcctgct ttaacgaaca ggcaacccaa cctggcgcgt
     2401 ggcgccgtgc tgtcatcacg ttacgctagg aagacgacga catcgctcgt tgggaacttg
     2461 agcccgcgct gacacaggcg atacaatggc tcaccagagc gcccgatcgc tttagcgccg
     2521 cgcatttttt cccgctactc accaggggag tttcatcgga gcaggccatt aatatgttag
     2581 gctggtgtgg cgtgtgcgga tggttaaatc gtttaaaaat cgcgttgggc gaaacctatt
     2641 aactcatcca ttactgaaag agcgcttgct gcgccaggca gaatcgcgta aaactgtcag
     2701 ccgctctttt ggctacgaaa atagacgaat atgtttcagg acaacccgct gctagcgcag
     2761 cttaaacagc aactgcattc ccagacgccg cgcgctgaag gggtcgtaaa agccacggaa
     2821 aaaggctttg gcttccttga ggttgacgcg caaaaaagct acttcattcc tccgccgcag
     2881 atgaaaaaag tgatgcatgg cgatcgtatc gtcgcggtca tccacacgga aaaagaacgt
     2941 gagtctgccg agccggaaga actgatcgaa ccgttcctga cgcgctttgt gggaaaagtt
     3001 cagggtaaaa atgaccgcct gtccatcgtg ccagatcatc cgttgctgaa agacgcgatt
     3061 ccctgccgcg ccgcgcgcgg cgttcagcat gagttcaaag aaggtgactg ggcggttgcc
     3121 gaaatgcgcc gccatccgct taaaggcgac cgttcgtttt acgccgattt aacgcagtac
     3181 atcacctttg ccgacgatca ctttgttccc tggtgggtta cgcttgcccg ccataacctg
     3241 gaaaaagaag cgccgaacgg cgtagcgacg gagatgctgg acgaagggct ggagcgccag
     3301 gatcttaccg cgctgaattt cgtcactatc gatagcgcca gcactgaaga tatggatgac
     3361 gcgctttatg ctgaggaatt agcggacggc agactccagc ttacggtggc tatcgccgat
     3421 cctaccgcct ggattgccga aggcagtaag ctggataacg ccgcgaaaat tcgcgccttc
     3481 accaactacc tgccgggctt caatattcct atgctgccac gtgagctgtc tgacgatctg
     3541 tgttcgctgc gcgccaacga agtgcgtccg gcgctcgcct gtcgcatgat catcgccgcg
     3601 gacggcacca ttgacgatga tattgccttt tttgcggcca ccatcgaatc gaaggccaag
     3661 ctggtgtacg acaatgtctc cgactggctg gaaaataaca gcacctggca gccggagaac
     3721 gaaggcattg cccagcagat tcgtctgttg caccgtattt gtctaagccg cagtgagtgg
     3781 cgtcatcatc atgcgttagt ctttaaagac cgcccggatt accgctttgt gcttggcgaa
     3841 aaaggcgaag tactggatat tgtggcggaa ccgcgccgta tcgctaaccg tatcgtagaa
     3901 gagtcgatga tcgccgctaa cctttgcgcc gcgcgcgtac tgcgcgataa gctcggtttc
     3961 ggtatttaca acgtacatac gggcttcgat cccgcgaatg ccgacgcgct ggccgcgctg
     4021 ctgaaaacgc atggtctgca tgtcgatgcc gaagaggtgc tgacgctgga aggcttctgt
     4081 aaactgcgtc gcgaactgga tgcgcagccc tccggtttcc ttgacagccg cattcgtcgc
     4141 ttccagtctt ttgcggaaat cagcaccgag ccggggccgc atttcggtct tggtcttgag
     4201 gcttatgcca cctggacctc tcccatccgt aagtatggcg atatgattaa ccatcgcctg
     4261 ctgaaagcgg tcatcaaggg ggaagctatt gcgcgtccgc aggaagatat cacccagcaa
     4321 atggcggaac gccgtcgcct gaaccgcatg gcggagcgcg atgtcggcga ctggttatat
     4381 gcacgcttcc ttaacgataa ggcggggaca aatacccgtt tcgcggcaga aattattgac
     4441 gtcagccgcg gtggtatgcg tgtgcgactg gtcgataacg gcgctatcgc ctttatccct
     4501 gccccgttcc tgcacgccgt tcgcgatgaa ctggtatgca gccaggaaaa cggtacggta
     4561 cagattaaag gtgagacggt ttataaagtg acggatgtca ttgatgtcac tattgcggaa
     4621 gttcgcatgg aaacccgcag cattattgcc cgaccggcag cgtaaccacg cttagctcgc
     4681 tcaacggcct ttgctgagaa ggcaaaggcc gtttcttttc ttcttctccc ttccgtcatg
     4741 ctctaagttt aatcttattc aagcgcccca tttcttgtta tttttagctg gcgactatgc
     4801 tttttc
//
LOCUS       DAJVSD010000288         4782 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.288, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000288 DAJVSD010000000
VERSION     DAJVSD010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4782)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4782)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4782
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.288"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(32..1036)
                     /gene="cra"
                     /locus_tag="OQP62_004061"
     CDS             complement(32..1036)
                     /gene="cra"
                     /locus_tag="OQP62_004061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolite repressor/activator"
                     /protein_id="HCS1723471.1"
                     /translation="MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE
                     HNYHPNAVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQ
                     PDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVV
                     GADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVNFLYAN
                     SYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDH
                     ELLDFLQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIRRNLYRRGILSRS
                     "
     gene            complement(1320..1811)
                     /gene="ilvN"
                     /locus_tag="OQP62_004062"
     CDS             complement(1320..1811)
                     /gene="ilvN"
                     /locus_tag="OQP62_004062"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001563086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HCS1723472.1"
                     /translation="MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLS
                     RMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGREEVK
                     RNTEIFRGQIIDVTPTLYTVQLAGTSDKLDAFLASLRDVAKIVEVARSGVVGLSRGDK
                     VMR"
     gene            complement(1814..3538)
                     /gene="ilvI"
                     /locus_tag="OQP62_004063"
     CDS             complement(1814..3538)
                     /gene="ilvI"
                     /locus_tag="OQP62_004063"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020079613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
                     /protein_id="HCS1723473.1"
                     /translation="MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGID
                     HVLVRHEQAAVHMADGLARATGDVGVVLVTSGPGATNAITGIATAYMDSIPLVILSGQ
                     VATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPLVLKKAFWLAASGRPGPVVVD
                     LPKDILNPAKKMPYVWPETVSMRSYNPTTSGHKGQIKRALQTLASAKKPVVYVGGGAI
                     SAACYAPLRHIIETFNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVI
                     FAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVNADIPVVGDARLVLEQMLEL
                     LAQDAPSQPQDDIRDWWQQIESWRARQCLKYDAESESIKPQAVIETLWRLTKGDAYVT
                     SDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPKEMVVCVTGDGS
                     IQMNIQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLA
                     EAYGHVGLQINRPDELESKLSEALEHVRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEM
                     WLSKTERT"
     gene            complement(3860..4765)
                     /gene="leuO"
                     /locus_tag="OQP62_004064"
     CDS             complement(3860..4765)
                     /gene="leuO"
                     /locus_tag="OQP62_004064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308107.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LeuO"
                     /protein_id="HCS1723474.1"
                     /translation="MGKPQLRMVDLNLLTVFDAVMQEQNITRAAHTLGMSQPAVSNAV
                     ARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPGSGFEPTSSERVFN
                     LCVCSPLDNILTSQIYNRVEKIAPNIHVVFKASLNQNTEHQLRYQETEFVISYEEFRR
                     PEFTSVPLFKDEMVLVASRKHPRISGPLLEGDVYNEQHAVVSLDRYASFSRPWYDTPD
                     KQSSVAYQGMALISVLNVVSQTHLVAIAPRWLAEEFAESLELQILPLPLKLNSRTCYL
                     SWHEAAGRDKGHQWMEDLLVSVCKR"
BASE COUNT         1167 a         1367 c         1138 g         1110 t
ORIGIN      
        1 gcagaagaga gagtctttta ccgccggtcc tttagctacg gctcagaatg ccgcgacgat
       61 acaggtttcg ccgaatacgc gttaagccgg gtttcggttt acgcggttca tcaagacttg
      121 ccagcacaat ctccagcacg cgttccgcga catcacgatg acgctgcgcc accgccagta
      181 ccgggcattg cagaaaatcc agcagctcat gatcgccaaa ggtcgcaatc gctaaatccg
      241 aaggcagttt tccatcgcgc cgcagcgtaa cgtccatcac gccctgtaat agcgcgaatg
      301 atgtcgtaaa gagcgcctgc ggcataggat gcgtttccag ccatttctca aacagctgcg
      361 cggcggcttc gcgctcatag ctgttggcat ataagaaatt cacctcccgc ggatcgtctt
      421 tccatgcggt gcggaacccc tgctcgcgca ggaaactgac ggacaactcc ggcagcgcgc
      481 ccaaataaag caccgtttcc gccgggaatt tacgcagctc ttccgccaac atctcggcat
      541 catcctgatc ggcgccgacc acgctggtga aatgttcgcg atccagcgcg cggtcgagcg
      601 cgacgatggg gaacggatcg ttggcccagc gctgatagaa gggatgctcc ggcggtaacg
      661 aagttgaaac aatgattgca tccacctggc gttgcaaaag gtgctcaatg cagcgcattt
      721 cgttatccgg ctgatcttca gaacaggcga tcagcagttg gtagccacgc tggcgtgcct
      781 ggcgctcaag atagtttgcg atacgggtgt agctcgtgtt ttcaaggtcc gggatcacca
      841 gaccaatgga acgtgtgcgt ccagcacgca gcccggcagc cacagcgtta ggatggtaat
      901 tgtgctcacg cactaccgcc atgacttttt ctacggtttt gtcgctcacg cggtattgct
      961 ttgctttacc gtttataacg tagcttgcag ttgtgcgcga gacaccggcc agccgagcga
     1021 tttcatccag tttcacaatt gccccttgtg taaattgtac aaaccataac ctttatgtcg
     1081 gcatgggtta aaatcgttaa catctaagcg cagtttgatc actccggcaa ccgcttttat
     1141 tccgggttac cacggatttc gcaaaaaaaa gcccaaccga tgatattggg ttgggcgata
     1201 attcctgttg gctgatatcc ggcaaacctg cctgatggcg ctacgcttat cggacctggg
     1261 ccagatatca gcctgtagac cggataaaac gcaagcgcgt cgtcatccgg cgaatctgct
     1321 cagcgcataa ccttatcgcc gcgcgaaagc ccgacgacgc ctgaacgcgc cacttcaaca
     1381 attttcgcca catcgcgcag cgaggccaga aaagcatcca gtttatcgct ggtgcccgcc
     1441 agttgaacgg tatacaacgt tggcgtaacg tcaataatct gaccacggaa aatttccgta
     1501 ttacgcttca cctcttcccg tccgtagccg ctggcctgga ttttcaccag catgatttcc
     1561 cgctcaacgt gcgctccctg tcccagctcg ctgacgcgca gcacatcaac cagcttgtgc
     1621 agttgctttt caatttgctc aagcactttt tcatcgccta ccgtctggat agtcatgcgc
     1681 gacaacgtcg gatcgtctgt cggcgcaacg gtcaggcttt caatattata tccgcgttgc
     1741 gaaaagaggc cgataacccg cgataacgcc ccagattcgt tttccagtaa taccgataaa
     1801 atccggcgca tcatcaggtc ctctccgttt tgcttaacca catttcgtcc atcccgcccc
     1861 cgcgaatctg catcggatag acatgctcgc tgccatcaac ggtgacatcg acgaacacca
     1921 gtcggttatt acgcacatgc tcaagggctt cgctgagttt actttccagc tcatccggac
     1981 ggttaatctg cagcccgaca tggccatatg cttccgccag gcgcacaaaa tccggtaacg
     2041 actgcatata agactgagaa tggcgaccgg aatagatcat atcctgccac tgtttcacca
     2101 tccccaggta acggttgttc aggttcagaa ccagtaccgg cagttcatac tgtaaggctg
     2161 tcgacagctc ctgaatgttc atctgtatac tgccatcgcc ggtcacgcag accaccattt
     2221 ctttcggcag ggccatttta acgcccagtg cagccggtag gccaaacccc atcgtgccga
     2281 gcccgccaga gttaatccag cgacgtggct tatcgaacgg gtagtagagg gcggcaaaca
     2341 tctggtgttg tcctacatcg gacgtcacgt acgcatcacc cttcgtcaga cgccagagag
     2401 tttcaatcac cgcctggggt ttaatgcttt cgctttccgc gtcatatttc aggcactgac
     2461 gggcgcgcca gctctctatc tgctgccacc agtcgcgaat atcatcctgc ggctgagacg
     2521 gcgcatcctg cgccagtagc tccagcattt gttccagtac caggcgtgca tcgcccacca
     2581 ccgggatatc agcgttaacc gttttggata tggacgtcgg gtcaatgtcg atgtgtaata
     2641 ccgtcgcgtt cggacaatat ttagcgagat tattcgtcgt gcggtcgtca aatcgtacgc
     2701 caacagcgaa aatcacgtcg gcgttatgca tggtcatatt ggcttcataa gtgccatgca
     2761 ttcccagcat tcctaacgac tggcgatgag tagcaggaaa cgcgcccagt cccattaatg
     2821 aagagaccac cggcaggtta aaggtttcaa tgatgtggcg cagcggcgca tagcaggccg
     2881 cgcttatcgc ccctccccca acatagacca ccggcttttt tgccgacgcc agcgtttgca
     2941 aggcacgctt aatttgtcct ttatgtcctg atgttgtggg attgtaagag cgcatactga
     3001 ccgtttccgg ccagacatac ggcatttttt tcgccggatt caaaatatct ttcggcagat
     3061 ccacgaccac cggcccagga cgtccgcttg ccgccagcca gaaggccttt ttaagcacca
     3121 ggggaatatc ttccgtctgt ttgaccagga agctatgttt gaccaccggt cgggaaatcc
     3181 ccaccatgtc gcactcctga aaggcatcat agccaatcaa tgaggtggcg acctggccgg
     3241 aaagaatcac cagcggaatg gaatccatat aggccgtagc aatccctgta atcgcattgg
     3301 tcgctcccgg tccggaagtc accagcacca cgccaacgtc gccagtggct cgcgccaggc
     3361 catccgccat atgcaccgcg gcctgctcat gacgcaccag cacatgatcg atccctccaa
     3421 cggtatgtag cgcatcataa atatcaagca ctgcgcctcc aggatagccg aacacctgct
     3481 ttacgccttg atcgataagc gatcggacga ccatctcggc tccagacaac atctccacgg
     3541 cttgcctcca ctttatacct gtcatcacgg tttgacggac accttaaccg ctcgctatca
     3601 cgcctggcaa ttgggtggaa tgacgtaaag atggggaagg ttagaataat caggaggcaa
     3661 gaagagaaga aatggagaaa tactccgtct gaatcacacc aggtaataaa taatcgctta
     3721 taaatgcaga cttacagcaa ttcatctatt tttcacagcg acgaaaagaa tcgctcaccg
     3781 ttaattcagc ataaaatttt tgacatacgc taaaaagcag aataaaccag aatttgtttc
     3841 tgatttattc tgcccggttt tatcgcttac aaacagagac taataaatct tccatccatt
     3901 gatgcccttt atcacgccca gccgcttcat gccaggaaag gtagcatgtc cggctattca
     3961 gttttaaagg caacggcagt atttgcagct ccagcgactc cgcaaactct tccgccagcc
     4021 agcgcggggc aatagcgacc aaatgcgtct gcgaaaccac gttcagaacg ctgataagcg
     4081 ccatgccctg ataagccacg ctcgactgtt tatccggcgt gtcataccac ggccgactaa
     4141 atgacgcata acgatcgaga gaaacaaccg catgttgttc attataaaca tcgccttcca
     4201 gtagcgggcc gctaatacgc gggtgttttc ggctggcgac taaaaccatt tcatctttaa
     4261 atagcggtac gctggtaaac tcaggacgac ggaattcttc ataactaata acgaactcgg
     4321 tttcctgata gcgtaactga tgctcagtat tctgattcaa cgacgcttta aaaacgacat
     4381 gaatatttgg cgcaattttt tctacacgat tataaatctg tgacgtcagg atattatcca
     4441 gcggactgca cacgcaaaga ttgaatacac gttcgctgct ggtcggctca aaccccgatc
     4501 ccggcaattc attttgcacc aattgcaacg cctgacggac tgaaccaaat aactgaaatg
     4561 cacgggcagt cggctgaatt cctcgtccat atcgaacaaa aagttcgtca ttaaacataa
     4621 ccttcagacg cgctacggcg ttactgaccg caggctgcga cattcccagc gtgtgggcgg
     4681 cgcgcgtaat attctgctct tgcattaccg catcgaacac ggtcaatagg ttcaaatcaa
     4741 ccatgcgaag ctgtggtttg cccatatcta aaagatgcgg ct
//
LOCUS       DAJVSD010000289         4743 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.289, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000289 DAJVSD010000000
VERSION     DAJVSD010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4743
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.289"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            180..683
                     /locus_tag="OQP62_004065"
     CDS             180..683
                     /locus_tag="OQP62_004065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1723475.1"
                     /translation="MNNVASPTLTVHRITTADNAAIARVIRQVSAEYGLTADKGYTVA
                     DPNLDELYQVYSQPGAAYWVVEQNGCVVGGGGVAPLSCSEPDICELQKMYFLPVIRGQ
                     GLAKKLALMALDHAREQGFKRCYLETTAFLREAIALYERLGFEHISEPLGCTGHVDCE
                     VRMLKDL"
     gene            790..1278
                     /locus_tag="OQP62_004066"
     CDS             790..1278
                     /locus_tag="OQP62_004066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3617 domain-containing protein"
                     /protein_id="HCS1723476.1"
                     /translation="MKRLLSAIVFPAMFISISNVYALDIQPGEWKMENIEMRTINPDT
                     KEVLMDEKNSGIATLMCYTPKMSEDSKKMVKGFSTSAGGCTTTFVESTDTKLINETVC
                     NNPDVKSHSIVETTKISDTEFAMTMKSDVDAGGNKTTSINKIKQTFVGKTCSEASKGV
                     KQ"
     gene            complement(1523..2287)
                     /gene="miaE"
                     /locus_tag="OQP62_004067"
     CDS             complement(1523..2287)
                     /gene="miaE"
                     /locus_tag="OQP62_004067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001109010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase
                     MiaE"
                     /protein_id="HCS1723477.1"
                     /translation="MNYPQILSPVLNFLHCPTPQAWIVQARDPQNLPLLLTDHLICEL
                     KAAQTALLLVRKYVADKSGADALLAWLQPYEAFAFRQGPEPDFVALHKQISKSAMPQT
                     DDPWGRQLIDRMVLLIKEELHHFWQVREVMQARNIPYVKITASRYAKGMLKAVRTHEP
                     LTLIDKLICGAYIEARSCERFAALAPWLDEDLQTFYLSLLRSEARHYQDYLALAQQIS
                     AEDISARVRYFGDVEADLILSPDREFRFHSGVPAAG"
     gene            complement(2346..2762)
                     /gene="rraB"
                     /locus_tag="OQP62_004068"
     CDS             complement(2346..2762)
                     /gene="rraB"
                     /locus_tag="OQP62_004068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HCS1723478.1"
                     /translation="MANPELLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDFE
                     TLEKAAVEAFKLGYEVTEPEELEVEEGDTVICCDILSECALNAELIDAQVEQLMNLAE
                     KYDVEYDGWGTYFEDPNGEEGDDDDYVDEDDDGVRH"
     gene            2928..3932
                     /gene="argF"
                     /locus_tag="OQP62_004069"
     CDS             2928..3932
                     /gene="argF"
                     /locus_tag="OQP62_004069"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HCS1723479.1"
                     /translation="MSTFYQKPFLKLLDFTASELTALLQLAAKLKADKKNGKEEQKLV
                     GKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGSSGSQIGHKESIKDTARVLGRMFD
                     GIQYRGYGQEIVETLAEYSGVPVWNGLTDEYHPTQLLADLLTMQEHLPGKAFNEMTLV
                     YAGDARNNMGNSMLEAAALTGLDLRLVAPKACWPQAALVAECSAMAKKNGGAITLTED
                     IASGVKGADFIYTDVWVSMGEPKEKWAERIALLRDYQVNSQMMALTGNPQVKFLHCLP
                     AFHDDETTLGKKMAEEYGLHGGMEVTDEVFESAASIAFDEAENRMHTIKAVMVATLSK
                     "
     gene            complement(4006..4458)
                     /locus_tag="OQP62_004070"
     CDS             complement(4006..4458)
                     /locus_tag="OQP62_004070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HCS1723480.1"
                     /translation="MIVGNIEHLEAWLPTALRQAIEHVNAHVTATTAPGKYDIDGDRL
                     FYMISENMTEPGESRSAEYHARYLDIQIVLQGQEGMAFSTRPAGTPHTDWLADKDIAF
                     LPTSVDEKTVVLNEGDFVVFYPGEVHKPLCAVGEPARVRKAVVKMLMA"
BASE COUNT         1259 a         1168 c         1130 g         1186 t
ORIGIN      
        1 attacaatct attagaatta ataataaaaa ccagtaaatt gttactgatt tgactacgat
       61 actatttttg tttaattttt ccgcctttta ttttgtctga ttcaggatct ccttgcgcgt
      121 aactcaagac ggtggtatta aagtaatcta taaataaatt ttaaaaattg agccatatta
      181 tgaataatgt cgcctcgcca acgctcacgg tgcaccgaat cactaccgcc gacaatgccg
      241 ctattgcccg tgtcatccgt caggtttcag cggaatacgg acttaccgcc gataaaggtt
      301 ataccgttgc cgaccccaat ctggatgaac tgtatcaggt ttatagccaa ccgggcgcgg
      361 cctactgggt ggtagagcaa aacggttgtg tggtgggcgg cggcggcgtg gcgccgttat
      421 cctgtagcga accagacatt tgtgaactgc aaaaaatgta ttttttaccg gtaattcgtg
      481 gtcaggggct ggcgaaaaag ctggcgctga tggcgctgga tcatgcccgt gaacagggtt
      541 ttaaacgctg ctatctggaa acaacggctt ttttacgcga ggcgattgcg ctatacgaac
      601 gtttaggatt tgaacatatt agcgaaccgc tcggctgcac cggacatgtc gattgcgaag
      661 tgaggatgtt aaaggatctc tgaaaaccag gcgtttattt atcctcgcca ggtattattt
      721 ttgctgatat aagtaatccc ggaaacatcc tgttatccgg gaatcactta ttattcaagg
      781 aagttataaa tgaaacgcct attatcagca attgttttcc ccgctatgtt tattagtatc
      841 tctaatgtat atgcattaga tatacagccc ggcgaatgga aaatggaaaa tatagaaatg
      901 cgcaccatca atccagatac aaaagaagta ttaatggatg aaaaaaattc gggcatagcg
      961 acgcttatgt gttatacccc taaaatgtct gaagattcta aaaaaatggt gaagggtttt
     1021 tctaccagtg caggcggttg cacgacaaca tttgtagaaa gtacggatac caaactgatc
     1081 aatgagactg tgtgtaataa tcctgatgtc aaatcgcact ctattgtaga aacgacgaaa
     1141 ataagcgata cagaatttgc gatgaccatg aaatcggatg tcgatgcagg aggtaataaa
     1201 acaacctcca tcaacaaaat taaacaaacc tttgttggca agacctgctc tgaagcgtca
     1261 aaaggcgtga aacagtaact atttcaacac aaaaacccgt agtgattgat gcaataatgg
     1321 cattgttcac ggtcaccttt cgggaatata acactgagtg agttcttttt gcctgccgca
     1381 gggcaggctt tactcaggac agaatatcat gaaaatgact tttcctgctc gccagcagct
     1441 tgatgccggg cggatgacca ccacaaattt tgcagacggc gacagcgtaa aagataaaaa
     1501 cgctaatctt taattttacg ctttatccgg cggctggcac gccgctatga aaacgaaact
     1561 cgcggtctgg cgacaagata aggtcagctt ccacgtcgcc aaaatagcgc acgcgcgcag
     1621 aaatgtcctc ggcggaaatc tgctgcgcca gcgccaggta atcctgataa tgccgcgctt
     1681 cggagcgcag aagcgagaga taaaacgtct gtaaatcctc atccagccag ggggccagag
     1741 cggcaaaacg ttcgcaggag cgggcttcga tatacgcccc gcaaatcagc ttatcaatta
     1801 aggtgagcgg ttcgtgcgtg cgtaccgctt tcaacattcc ttttgcgtag cggctggcgg
     1861 tgattttcac ataaggaatg tttctggcct gcatgacctc gcgtacctgc caaaaatggt
     1921 gcaactcctc tttaatcaat aacaccatac ggtcgataag ctgacgaccc caggggtcat
     1981 cagtttgcgg catggcgctt ttgctaatct gtttatgcag ggcaacaaaa tccggctccg
     2041 gcccctgacg aaacgcgaac gcctcgtaag gttgcagcca ggcgagcagc gcgtcggcgc
     2101 ccgatttatc ggcgacatat ttacgcacca acagcaacgc ggtttgcgca gccttcagtt
     2161 cgcagatcaa gtgatcggta agcagaagag gaagattttg cggatcgcgg gcctggacaa
     2221 tccacgcctg cggcgtcggg caatgcagga aattaagcac cggagagagt atttgcgggt
     2281 aattcatacg taacctgtaa aaaaatacga cagcagacgc tgccgtaccg tcatactatg
     2341 cagctttagt gacgcacgcc gtcgtcatct tcatcgacat aatcgtcgtc gtcaccctct
     2401 tcgccattag ggtcttcgaa ataggttccc cagccgtcgt attcgacatc atatttttcc
     2461 gccaggttca tcagttgctc aacctgagcg tcgatgagtt cggcgttcaa cgcgcactcg
     2521 ctgaggatgt cgcaacaaat aaccgtatcg ccctcttcca cttccagctc ttccggctcc
     2581 gtcacttcat agccgagttt aaaggcttct accgcggctt tttccaacgt ttcgaaatcg
     2641 tcagcggaaa ggtgatgctc gatagtgtac agcgcatccg gatcgctgcc gtcctcaagt
     2701 aactcttcaa taattaaccg cgtttcttca cgctgctctt ccagtaattc cgggtttgcc
     2761 atagctcgtt cctcatagat gtcctgccga tactcttatt gtcacatacc gccgacgttg
     2821 cctccacctt atcgagaaaa gttttatcaa acagggttgc aaatgaataa tcatccatat
     2881 aaagtgaatt ttaattcaat gagaggccta agccatgtga gggaagtatg tctacgtttt
     2941 accaaaaacc ttttttaaag ttacttgatt tcaccgccag tgaactcact gctctgttgc
     3001 agcttgctgc caaactgaaa gccgataaga aaaacggtaa agaagaacaa aagctggtgg
     3061 gtaaaaatat tgcgctcatc ttcgaaaaag actcgacccg gacacgatgc tctttcgaag
     3121 ttgccgcata cgatcagggg gcgcgcgtga cgtacctggg ttccagcggg agccagatcg
     3181 gtcataagga gtccatcaaa gatactgccc gcgtcctggg ccggatgttt gacggtattc
     3241 agtatcgagg atatggccag gagatcgtcg aaacgctggc tgaatattcc ggtgtgccgg
     3301 tatggaacgg tttaaccgat gagtatcacc caacgcaatt actggcggat ctgctcacca
     3361 tgcaggaaca tctgccgggt aaagccttta acgagatgac gttggtctat gccggagacg
     3421 cacgcaataa catgggtaac tccatgctgg aagccgccgc gttaacagga ttggatctcc
     3481 gtctggtcgc gccaaaagcc tgctggccgc aagccgcgtt agtggcggag tgcagcgcca
     3541 tggcgaaaaa gaacggcggc gccatcaccc tgaccgaaga tattgcctcg ggcgtaaaag
     3601 gcgcggattt tatctatacc gatgtttggg tctctatggg cgaacccaaa gagaaatggg
     3661 cggagcgtat tgccctgctg cgtgattatc aggtcaacag ccagatgatg gcgttaaccg
     3721 gcaatccgca ggttaagttc ctgcattgtc tgcctgcgtt ccatgatgac gaaaccacgc
     3781 tcggcaaaaa aatggccgaa gagtacggtt tacatggcgg gatggaagtg accgacgagg
     3841 tttttgagtc tgcggccagc attgcctttg atgaagcgga aaaccgaatg cataccatca
     3901 aagcggtaat ggtagcgacg ctgtctaaat aatgtcgtta tgatgccgga tggcggttgg
     3961 cctacaagat cgcaacgtgc aggcgccgcc atccggcaca aaatattacg ccatcagcat
     4021 tttcacaacc gctttacgta cccgcgccgg ttctcccacc gcgcacaggg gcttatgcac
     4081 ttcgccggga taaaacacca caaagtcacc ttcgttcagg acgacggttt tctcgtcgac
     4141 gctcgtcggt aaaaatgcaa tgtctttatc cgccaaccag tccgtgtgcg gcgttcccgc
     4201 aggccgggta ctgaatgcca tcccttcctg accttgtagc acaatctgaa tatcaagata
     4261 acgggcgtga tactctgcgc tgcgcgattc gcccggctcc gtcatatttt cagaaatcat
     4321 ataaaacagc ctgtcgccgt caatgtcata cttacctggc gcggtcgttg ccgtgacatg
     4381 cgcgttgacg tgctcaatcg cctgccgtaa cgccgtcggc agccaggcct ccagatgttc
     4441 aatattgcca acaatcatcg catctcctta gttaaaacag cgttttattt ttctctttat
     4501 acgagaaaaa tggctgccat actaccctta ctctcatcga ttttgcgcca gcgcatgttt
     4561 atcgccagcg gtgtttatat attgttaata gttcgcccaa ctttatgcag tacctatgca
     4621 ttaacctcag cggagccaaa ttgccatcac taacaacgct ttgatattaa aggcgttaac
     4681 ataaaaacgt tttagcgatc acaattcgct ctccctgcat aaatgacttc tatatccata
     4741 gtt
//
LOCUS       DAJVSD010000290         4716 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.290, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000290 DAJVSD010000000
VERSION     DAJVSD010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4716
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.290"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            141..1394
                     /gene="amiC"
                     /locus_tag="OQP62_004071"
     CDS             141..1394
                     /gene="amiC"
                     /locus_tag="OQP62_004071"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiC"
                     /protein_id="HCS1723481.1"
                     /translation="MSGANSAISRRRLLQGAGAMWLLSVSQVGLAAVSQVVAVRIWPA
                     SSYTRVTVESNRLLKYKQFALSNPDRVVVDIEDVNLNSVLKGIGAQIRSDDPYIKSAR
                     VGQFDPKTVRMVFELKQNVKPQLFALAPVAGFKERLVIDLYPANAQDMQDPLLALLED
                     YNKGDLDKQVPPSQSGPQPGKAGRDRPIVIMLDPGHGGEDPGAIGKYKTREKDVVLQI
                     ARRLRALIEKEGNMKVYMTRNEDIFIPLKVRVAKAQKQRADLFVSIHADAFTSRQPSG
                     SSVFALSTKGATSTAAKYLAQTQNASDLIGGVSKSGDRYVDHTMFDMVQSLTIADSLK
                     FGKAVLKQLGKINDLHKNKVEQAGFAVLKAPDIPSILVETAFISNIEEERKLKTATFQ
                     QQVAESILAGIKAYFADGATLARRS"
     gene            complement(1504..1580)
                     /locus_tag="OQP62_004072"
     tRNA            complement(1504..1580)
                     /locus_tag="OQP62_004072"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1544..1546),aa:Met,seq:cat)
     gene            complement(1610..1686)
                     /locus_tag="OQP62_004073"
     tRNA            complement(1610..1686)
                     /locus_tag="OQP62_004073"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1650..1652),aa:Met,seq:cat)
     gene            1894..2991
                     /gene="mltA"
                     /locus_tag="OQP62_004074"
     CDS             1894..2991
                     /gene="mltA"
                     /locus_tag="OQP62_004074"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008785702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HCS1723482.1"
                     /translation="MKGRWAKYVATGVMLAMLAACSSKPTDRGQQYKDGKFTQPFSLV
                     NQPDAVGAPINAGDFAEQVDQIRSASPRLYTNQSNVYNAVQNWLRSGGDTRTMRQFGI
                     DAWQMEGTDNYGNVQFTGYYTPVVQARHTRQGAFQYPIYSMPPKRGRLPSRAQIYAGA
                     LSDKYILAWSNSLMDNFIMDVQGSGYIDFGDGSPLNFFSYAGKNGWPYRSIGKVLIDR
                     GEVKKEDMSMQAIREWGEKHSEAEVRELLEQNPSFVFFKPQSFAPVKGASAVPLIGRA
                     SVASDRSIIPPGTTLLAEVPLLDNNGKFSGQYELRLMVALDVGGAIKGQHFDIYQGIG
                     PDAGHRAGWYNHYGRVWVLKSAPGAGNVFSG"
     gene            3100..3906
                     /gene="tcdA"
                     /locus_tag="OQP62_004075"
     CDS             3100..3906
                     /gene="tcdA"
                     /locus_tag="OQP62_004075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HCS1723483.1"
                     /translation="MSVVISDAWRQRFGGTARLYGEKALQRFAEAHICVVGIGGVGSW
                     AAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRV
                     TVIDDFITPDNVAGYMDAGFTYVIDAIDSVRPKAALIAYCRRYKVPLVTTGGAGGQID
                     PTQIQVADLAKTIQDPLAAKLRERLKHNFGVVKNSKGKLGVDCVFSTEALVYPQADGS
                     VCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKIMAKAARQE"
     gene            complement(3958..>4716)
                     /gene="rarD"
                     /locus_tag="OQP62_004076"
     CDS             complement(3958..>4716)
                     /gene="rarD"
                     /locus_tag="OQP62_004076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461905.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HCS1723484.1"
                     /translation="RLLFRQRTRFHDAWKDKKSFFFCMIAGLLMIVSWSSFIYALTHH
                     LVLDASLGYFINPLFVIALGCIFLKEKLSLFQAIAVFSGVCGLTFQIIMLRHFPALAL
                     TMGLSFALYGLARKFIHYDVMTSITIETLWALPVSLLIFLFSDTGPIISANTPFFLYV
                     MTAPVTIIPLVLFAIALNHTSLIVTGLAQYIEPSLQFLLAIMIFGEHINYAELLCFCA
                     VWFGLFLCISENLYSHYLRARLKPVFGRVQRFFR"
BASE COUNT         1200 a         1111 c         1324 g         1081 t
ORIGIN      
        1 cgcttttctt agtaatgccg tgaatataaa aagaatgttt acccttttat agatgacaga
       61 ttatgcgtca ttcgctaaag tttccggtca atttggatga actttgtatg atctctattt
      121 agtttttgct cgggagaagc atgtcgggag ccaattcagc aatcagccgt cgccgtttac
      181 tacaaggcgc gggcgccatg tggctattaa gcgtgagcca ggtcgggctg gctgccgtaa
      241 gccaggtcgt tgcggtgcgt atctggcctg cgtccagcta tacccgcgtc acggtagagt
      301 cgaatcgtct gctgaaatat aaacaatttg ccttaagtaa cccggaccgc gtggtggtag
      361 atattgagga tgtgaatctg aactcggtgc ttaaaggcat tggcgcgcag attcgcagcg
      421 acgatccgta tatcaaatcc gcaagggtag ggcagtttga tcctaagact gtgcgtatgg
      481 tctttgagct aaaacaaaac gtgaagccgc agctatttgc gctggcgcct gtggcaggct
      541 ttaaagaacg tctggtgata gatctttatc ctgctaatgc gcaggatatg caggatccgc
      601 tgctggcgct gctggaagac tacaataaag gcgatctgga taaacaggtg ccgccttcgc
      661 aaagcgggcc gcagcccggt aaagcggggc gcgatcgtcc cattgtcatt atgcttgatc
      721 cgggacacgg cggcgaagac cctggcgcga taggcaaata caaaacgcgt gaaaaagacg
      781 tggtgctcca gatagcccgc cgcctgcgcg cgttgatcga aaaagaaggc aacatgaagg
      841 tctatatgac gcgcaatgaa gacatcttca ttccgttaaa agtccgggtg gcgaaagcgc
      901 agaaacagcg cgccgacctg tttgtctcta ttcatgcgga tgccttcacc agccggcagc
      961 ctagcggttc atccgtattc gcgctatcga ctaaaggcgc caccagtact gcggcgaaat
     1021 atctggcgca aacgcagaac gcctcggact taattggcgg cgtgagcaaa agcggtgacc
     1081 gttatgtcga ccatacgatg ttcgatatgg tgcaatcgct gaccattgcc gatagtttga
     1141 aattcggtaa agcggtgttg aagcagcttg gtaaaattaa tgacctgcat aaaaacaagg
     1201 tcgagcaggc ggggtttgcg gtgttaaagg cgcccgatat tccgtctatt ctggtcgaga
     1261 cggcgtttat cagtaacatt gaagaagaac gcaagctcaa gaccgcgacg ttccagcaac
     1321 aggtcgcaga gtcgattctg gcgggcatta aagcctattt tgccgatggg gcgacgctgg
     1381 cgagaagaag ttaacctgag atgacggcga gtttattgcg cgggtaagta ggatgctgcc
     1441 cgcactgtcg ttgcggacca gatgacagat acaaaaaaac acccgtaagg gtgttcatta
     1501 agttggttgc gggggccgga tttgaaccga cgaccttcgg gttatgagcc cgacgagcta
     1561 ccaggctgct ccaccccgcg tccgtctaaa cttgcattct cattgtaatt ggttgcgggg
     1621 gccggatttg aaccgacgac cttcgggtta tgagcccgac gagctaccag gctgctccac
     1681 cccgcgtccg tggatgcgca ctatactccg ctgagctttt gttgcaaccc ttttttcata
     1741 taaatcgcta atttctcatg aattgcgcaa atacaccgca gatagcgcga tttttaaacg
     1801 aatttacata atgagatcgc gatcgcattt cattacttcg gacggtttgt tatcttcacc
     1861 gggcactttc gattacgcag aagacgagac accatgaaag gacgttgggc aaaatatgtg
     1921 gcgacaggcg taatgctggc aatgctggct gcctgttcat caaaaccgac cgatcgcggt
     1981 cagcaatata aggacgggaa atttacccag cccttctccc tggtaaacca gccggacgcg
     2041 gtgggcgcgc cgattaatgc tggtgacttt gccgagcagg tcgaccagat ccgttccgcg
     2101 tcgccgcgtt tatacaccaa tcaaagcaac gtctataacg ctgtccagaa ctggttacgt
     2161 tccggaggcg atacgcgcac tatgcgtcag tttggtatcg atgcctggca gatggaaggc
     2221 accgacaact acggtaacgt ccagttcacg ggctactata cgcccgtcgt tcaggctcgc
     2281 catacgcgcc agggcgcgtt ccagtaccct atctatagta tgccgccaaa acgcggacgc
     2341 ttaccgtccc gcgcccagat ctacgcaggc gcgctgagcg ataagtacat cctggcctgg
     2401 agtaattcgc tgatggataa ctttattatg gatgtccagg gcagcggtta tattgatttc
     2461 ggtgatggta gtccgctgaa cttctttagt tatgccggta aaaatggctg gccttatcgc
     2521 agtattggta aagtgcttat cgatcgcggt gaagtgaaaa aagaagatat gtcgatgcag
     2581 gctatacgcg aatggggaga gaagcacagc gaagcggaag tgcgtgaatt actggagcag
     2641 aacccgtcgt tcgtcttctt taaaccgcaa tcttttgcgc cggtcaaagg cgccagcgct
     2701 gtaccgctga ttgggcgagc atccgtcgcc tccgaccgca gcatcattcc gccgggcaca
     2761 accttgttgg cggaagtacc gttgctggat aacaacggta aatttagcgg tcagtatgag
     2821 ctacgtttga tggtcgcact ggatgtcggc ggagcgatta aaggccagca ctttgatatt
     2881 taccagggga ttggcccgga tgccgggcat cgtgccggat ggtataatca ctatggtcgc
     2941 gtctgggtgt taaaaagcgc gccgggcgcc ggtaacgtgt ttagcggctg attgtggtat
     3001 tctgcgacaa ccggattgcc cgataacgcg attgctatcg ggcctgaaaa tagtgagcag
     3061 gggtgaggaa taacctcacc ttttttattc tgaggtcata tgtcagtggt gataagtgat
     3121 gcctggcgcc aacgctttgg cggcaccgcg cgtctgtacg gtgaaaaagc gctgcagcgg
     3181 tttgctgagg cgcatatctg cgtcgtggga atcggcgggg taggatcatg ggcggcagag
     3241 gcgctggcgc gtacgggcat cggcgcgatt acgctgattg atatggacga tgtctgcgtg
     3301 accaatacga accgtcagat ccatgcgttg cgtgataacg ttgggttggc gaaagcggaa
     3361 gtgatggccg aacggattcg gcaaattaac ccggagtgcc gggtaacggt tatcgatgat
     3421 ttcatcacgc cggataatgt ggcgggttat atggacgcgg gttttaccta tgtcattgac
     3481 gccattgaca gcgttcgtcc aaaagccgcg ctgattgcgt actgtcgccg atataaggtt
     3541 cctttagtaa ccactggcgg cgcgggcggg cagatcgatc cgacgcaaat ccaggtcgct
     3601 gatttggcga aaactatcca ggatccgctg gcggcaaaac tgcgtgagag attgaaacat
     3661 aattttggcg tagtgaagaa cagtaaaggt aagctgggcg tggactgcgt tttttccacc
     3721 gaagcgctgg tttacccaca ggcggacggt tccgtatgcg cgatgaaagc taccgcagaa
     3781 gggccaaaac ggatggattg cgcctctggc ttcggcgcgg cgacgatggt aacggcaacg
     3841 ttcggttttg tcgccgtttc ccatgcgctg aagaagatca tggctaaagc ggcgcgacaa
     3901 gaataaaagg acggggcgga gtgtcacgca gacgcgtatc cggccctgcg ccctttgtta
     3961 gcgaaagaag cgctgtaccc tgccgaacac cggtttcaga cgggcgcgga gataatggga
     4021 atataaattt tcagatatgc atagaaacag cccgaaccat actgcacaaa agcagagcag
     4081 ttccgcgtaa ttaatgtgct cgccaaatat cataatggca agtaagaact gtaaagacgg
     4141 ctctatatat tgcgccagtc cggtgacaat caacgaggtg tgatttaacg cgatggcaaa
     4201 taataccagt ggaatgatcg tcactggcgc cgtcatgaca tacaaaaaga aaggagtatt
     4261 agcggatata attggtccag tatcgctaaa gagaaaaatt aatagtgaga caggcaatgc
     4321 ccataatgtt tcaatcgtta tcgatgtcat cacatcataa tgtataaact ttcgcgccag
     4381 gccatatagc gcaaatgata atcccatggt tagcgccagc gccgggaaat gccgtagcat
     4441 gataatttga aaagtcaggc cacagacacc agaaaaaacg gcgatggcct gaaacaacga
     4501 cagtttttct ttaagaaaaa tgcatcccag cgcaataaca aatagcgggt tgataaaata
     4561 gccgaggctg gcatcaagta ccagatgatg ggttagcgca taaatgaaag atgaccatga
     4621 gacaatcatc aaaagtccgg cgatcatgca gaagaaaaag gattttttat ctttccaggc
     4681 atcatgaaat cgcgttcgct gccgaaataa caacct
//
LOCUS       DAJVSD010000291         4645 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.291, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000291 DAJVSD010000000
VERSION     DAJVSD010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4645
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.291"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..675
                     /locus_tag="OQP62_004077"
     CDS             <1..675
                     /locus_tag="OQP62_004077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoplasmic protein"
                     /protein_id="HCS1723485.1"
                     /translation="SFTSSKYEEGADYLLSCLRQGNIDVDYMPAHIVQTRFPQTAEAL
                     ACYDAIVISDIGSNTFLLQNRTFYNMDIIPDALQLIADYVAEGGGLLMIGGYLSFTGI
                     EAKANYKNTVLAEVLPVDMLDVDDRVELPQGCKAVNTAVKHVITQPFSEWPPLLGYNK
                     LIAKENSQVLAEINGDPLLVMGTYHKGKVCCFASDCSPHWGSPQFLQWEHYATFWCNV
                     LHTIKK"
     gene            734..1422
                     /locus_tag="OQP62_004078"
                     /pseudo
     CDS             734..1422
                     /locus_tag="OQP62_004078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460345.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
     gene            1444..2787
                     /locus_tag="OQP62_004079"
     CDS             1444..2787
                     /locus_tag="OQP62_004079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HCS1723486.1"
                     /translation="MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVY
                     IIGAIAMFFTAYSYSTLSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLV
                     AVLGGVAVHAILPQIPVWVWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFV
                     LLIIRLMMQDSSQITLSFRPFFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEG
                     GGRAVSKATLLALVLATVLFIIVVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIW
                     LKVAFSIIVAFVCAVGNIITAQTAVSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILF
                     TGGVTLLLSYLFSGKIESISTLVNFGALFAFFVVNLCVFILFNFRMKAQRRIFAHVIS
                     PIMGMIVIGYVCLNMNIHALILGISWAAIGIAILCYRKAYNQNIAIDLEGKKLLD"
     gene            3189..4601
                     /gene="pykF"
                     /locus_tag="OQP62_004080"
     CDS             3189..4601
                     /gene="pykF"
                     /locus_tag="OQP62_004080"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010346010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase PykF"
                     /protein_id="HCS1723487.1"
                     /translation="MKKTKIVCTIGPKTESEEMLSKMLDAGMNVMRLNFSHGDYAEHG
                     QRIQNLRNVMSKTGKKAAILLDTKGPEIRTIKLEGGNDVSLKAGQTFTFTTDKSVVGN
                     NEIVAVTYEGFTSDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNL
                     PGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVVEIREHLKAHGGENIQII
                     SKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVIT
                     ATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICER
                     TDRVMNSRLDYNNDSRKLRITEAVCRGAVETAEKLEAPLIVVATQGGKSARAVRKYFP
                     DATILALTTNEVTARQLVLSKGVVSQLVKEINSTDDFYRLGKDVALQSGLAQKGDVVV
                     MVSGALVPSGTTNTASVHVL"
BASE COUNT         1133 a         1153 c         1143 g         1216 t
ORIGIN      
        1 agctttacat cgagcaaata cgaagaaggc gcagactatt tattatcctg cttacgccag
       61 ggtaatatcg atgtggacta catgcctgcc catattgtgc aaactcgttt tccacaaacc
      121 gccgaagcat tagcctgcta tgatgcgatc gtcatcagtg atatcggtag caatacgttc
      181 ctgttacaaa acagaacctt ttataatatg gacattattc ctgatgcatt acaacttatc
      241 gccgattatg ttgctgaggg cggcggtctg ttaatgatcg gcgggtattt atcctttacg
      301 ggaatagaag caaaagccaa ttataaaaat acggttctgg cggaggtatt gccggttgat
      361 atgctggatg tagatgaccg cgtagaacta ccgcaaggat gtaaagcagt aaatactgcg
      421 gtaaaacatg ttattaccca gccatttagc gaatggccgc cgctgttggg ctataacaag
      481 cttatcgcca aagaaaatag tcaggtcctt gctgaaatta atggcgatcc actgttagtt
      541 atgggtactt accataaagg gaaagtatgt tgctttgcca gtgattgttc gccgcactgg
      601 ggaagtccgc agtttctgca atgggaacat tacgccacct tctggtgtaa tgttttacac
      661 acaataaaaa aataatatta cccaggcgaa tataaatttc gcctgccctg ccacacactg
      721 agtcattaag aatatgaatg atacttatct ctatggcgaa atgttttctg aaaacatatt
      781 gacaagctat cggatttatg gcgacagaaa atcattactc acgccgctca ttatccttca
      841 tggcggccct tctggcggct ttgattattt attaaattat cgccgtctgg ctgatgacgg
      901 gcgcatggta atattttacg atcaatatgg ttgcggtcgt tcaacgcatt ttcctcatgc
      961 cgacgcgtct ttctggacta ttgcgcgtta tctccgtcaa ttaacccaat taattcatca
     1021 cctgggtatt gggcacgggt attcgatact gggacattcc tggggcggaa tgcttgccgc
     1081 agagcacgcc tgcttacagc ctgccgggct tcgcgggacg atactggcca gttcgccgcc
     1141 gaccctacgg gttatcacat tttatgggga accaatgaac tggcggcaaa tggcaaactt
     1201 gccgactggg atattacgcc ccatttgtgc cagatacgct gtcctgttct ggtactacgc
     1261 ggcgaaaacg atcaggcaac cgagcgcgtc gtctctccgc tgctctctca catttcagac
     1321 tgccgcgcgg tcactattcc tggcagcagc cataacccgc atgaagaaaa tatcgcgccc
     1381 tgcctcgcag aggtaagcgc gtttttacgc gatctggcat aaaaagccat taagatattt
     1441 atcatgaaaa aagtcaaaaa attgtctctt accgatttag tgctttatgg tctggtgttt
     1501 atggtgccta tcgcaccagt ctctctttat ggcgtcgttt ataatctttc gcacggtatg
     1561 gttgcgctgg tttatattat tggcgctatc gcgatgtttt ttaccgcgta cagctactct
     1621 accttatcgc agcatatctc ctcgtcgggt tcggcctatg cgtatgctgg cgtatgcatt
     1681 aatcccgccg tagggtttct gaccggatgg atattactgc tggattatct tttgttccct
     1741 acgctcgtag cggtgctggg cggtgtcgcg gtccacgcta ttttaccgca aatcccggtc
     1801 tgggtctggc cgttgattta tgtggctatt ggcaccggag tcaactatct cgggatacag
     1861 caaacggcga aattcgataa gttactggtc tttattcaac tcggtattct ggcgattttc
     1921 gtgctactca ttatccgtct gatgatgcag gacagtagtc agataacgct ttccttccgg
     1981 ccttttttcg attcacagtg gttcacccct gggctcatcg caacggcgat ttcggtggct
     2041 gcgctgaatt ttctcggctt tgacgctatc agtacattaa gtgaagaaag cgaaggcggg
     2101 ggacgcgccg tcagtaaagc aacactgttg gcgttagttt tggcgacggt actgtttatt
     2161 atcgttgtgg cgtttgcggc gttcgccacc ggtaacgtcg accgcttcgc ggaaggtaat
     2221 gcgacgaatg aagcattttt caccattgcc ggcaacgttg gcggtatctg gctcaaagtg
     2281 gcgttttcca tcattgtggc gtttgtgtgc gccgtcggca acattattac cgcgcaaacg
     2341 gcggtgtcca gagtgttatt ttcaatgggg cgcgaccgaa tgttgcccgc cttcctcgct
     2401 cacgtccata ccacgcgtaa aacgccggat tatgccattc tgtttaccgg cggcgtcacc
     2461 ctgctgctca gctacctgtt ttccggcaag attgaatcta tctccacgct ggtgaacttt
     2521 ggcgcgcttt tcgctttttt tgtcgtgaac ctgtgtgtgt ttatcctgtt caatttccgg
     2581 atgaaagccc agcggcgcat tttcgcccat gtcatttcgc cgatcatggg gatgatcgtc
     2641 atcggctacg tctgtttaaa catgaacatt cacgctctga tactcggaat tagctgggcg
     2701 gcgatcggga tagcgatact gtgctaccga aaagcataca accaaaacat cgccatcgac
     2761 ctggaaggca aaaagttgct cgattgacat tatgcgcaac aacaccagct gttgcgcaac
     2821 gccgcccctg ttcgggcggc gtcatcgcca gcgacatcgt aaacagcgta ataacaaacc
     2881 gttgtggatc tgcacagatg tcttttgaaa cagggttttc attttccttt tttgtaaatt
     2941 tcagcgtata atgcgcgcca attgtctctt gaatggtttc agcgcattgg actgtaaaac
     3001 tcaacgacta aaattatccc cttcccgttg ggctgaaacg cgagcacaca ttcctctgca
     3061 cgctctttcg atgtcaccta tccttagagc gaggcatcat cactttagca acacaggctt
     3121 agcttacggg ccgtgcgcgc ccgaagccag atttccatat cctcctcaac ttaaagacta
     3181 agactgtcat gaaaaagacg aaaattgttt gtactatcgg tccgaaaacc gaatccgaag
     3241 agatgttaag caaaatgctg gacgcgggca tgaacgtgat gcgtctgaac ttctctcatg
     3301 gcgattatgc agaacacggt cagcgtatcc agaacttgcg caacgtgatg agcaaaactg
     3361 gtaaaaaagc tgctattctg cttgatacta aaggaccaga aatccgcacc attaaactgg
     3421 aaggcggtaa cgacgtttcg ctgaaagcgg gccaaacctt tacttttacc accgacaaat
     3481 ccgtggtcgg taataatgaa atcgttgccg tcacctatga aggcttcacc agcgacctga
     3541 gcgttggcaa caccgtcctg gttgacgatg gtctgatcgg tatggaagtg accgccatcg
     3601 aaggcaataa agtcatttgt aaggtgctga acaacggcga tctgggcgag aacaaaggcg
     3661 ttaacctgcc gggcgtttct attgctctgc cggcgctggc tgaaaaagac aaacaggacc
     3721 tgatcttcgg ttgcgaacag ggcgttgact ttgttgctgc gtcctttatc cgtaaacgtt
     3781 ctgacgttgt cgaaattcgc gagcatctga aagcccacgg cggcgaaaac atccagatta
     3841 tctctaagat cgaaaaccag gaaggcctga acaacttcga tgaaattctc gaagcttccg
     3901 acggcatcat ggttgcgcgt ggcgacctgg gcgtagaaat cccggttgaa gaagtgatct
     3961 ttgcgcagaa aatgatgatc gaaaaatgta tccgcgcacg taaagtcgtg atcaccgcga
     4021 ctcagatgct ggattctatg atcaaaaatc cgcgtccgac ccgcgcagaa gcaggcgatg
     4081 ttgcaaacgc catcctcgac ggtacggatg cggttatgct gtccggcgaa tccgcaaaag
     4141 ggaaataccc gctggaagcc gtttctatca tggcgaccat ctgcgaacgt accgaccgcg
     4201 tcatgaacag ccgtctggac tacaacaacg acagccgtaa actgcgcatt acggaagcgg
     4261 tatgccgcgg cgcggtagaa accgccgaaa aattggaagc gccgctgatc gtggtagcga
     4321 cccagggcgg taaatccgct cgcgccgtgc gtaaatactt cccggacgcc accatcctgg
     4381 cattgaccac caatgaagtg accgcccgtc agttagtact gagcaaaggc gtggtatcgc
     4441 agctggtgaa agaaatcaat tctactgatg atttctaccg tctgggcaaa gatgtcgccc
     4501 tacaaagcgg cctcgcccag aaaggcgacg tcgtagtgat ggtctccggc gcgctggttc
     4561 caagcggcac cactaacacc gcctctgttc acgtactgta ataattgttg tgtgaattaa
     4621 tttgtttaaa aaagcgccct tccgg
//
LOCUS       DAJVSD010000292         4635 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.292, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000292 DAJVSD010000000
VERSION     DAJVSD010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4635)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4635)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4635
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.292"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            406..1434
                     /gene="murB"
                     /locus_tag="OQP62_004081"
     CDS             406..1434
                     /gene="murB"
                     /locus_tag="OQP62_004081"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HCS1723488.1"
                     /translation="MTHSLKPWNTFGIDHCAKHIVCAENEQQLLSAWQQATREGLPVM
                     ILGEGSNVLFLENYAGTVILNRLKGIEVNETADAWHLHVGAGENWHQLVRYALDNNMP
                     GLENLALIPGCVGSSPIQNIGAYGVELHRVCDYVDCVELETGKRLRLSAAECRFGYRD
                     SIFKNEYQDRVAIVAVGLRLSKQWQPVLTYGDLTRLDPKTVTAQQVFDAVCHMRTTKL
                     PDPKVNGNAGSFFKNPVVAADIAMELLERFPNAPHYPQADGSVKLAAGWLIDQCQLKG
                     VTIGGAAVHRQQALVLINANDATSKDVVALAHHVRQKVGEKFNVWLEPEVRFIGQFGE
                     VNAVESIA"
     gene            1431..2393
                     /gene="birA"
                     /locus_tag="OQP62_004082"
     CDS             1431..2393
                     /gene="birA"
                     /locus_tag="OQP62_004082"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     ligase/biotin operon repressor BirA"
                     /protein_id="HCS1723489.1"
                     /translation="MKDTTVPLTLISLLADGEFHSGEQLGERLGMSRAAINKHIQTLR
                     DWGVDVFTVPGKGYSLPEPIQLLDADRIHSQLDSGNVAVLPVIDSTNQYLLDRIGELR
                     SGDACVAEYQQAGRGRRGRKWFSPFGANLYLSMYWRLEQGPAAAIGLSLVIGIVMAEV
                     LRELGADKVRVKWPNDLYLLDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEEDV
                     INQGWITLQEAGITLDRNMLAAKLIYKLRAALELFEQEGLSPYLSRWKKLDNFIDRPV
                     KLIIGDKEIFGISRGIDTQGALLLEQDGVIKPWMGGEISLRSAE"
     gene            complement(2428..3378)
                     /gene="coaA"
                     /locus_tag="OQP62_004083"
                     /gene_synonym="panK"
     CDS             complement(2428..3378)
                     /gene="coaA"
                     /locus_tag="OQP62_004083"
                     /gene_synonym="panK"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HCS1723490.1"
                     /translation="MSIKEQSLMTPYLQFDRSQWAALRDSVPMTLTEDEIAQLKGINE
                     DLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKS
                     TTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFV
                     SDLKSGVPNVTAPVYSHLIYDVIPEGDKTVAQPDILILEGLNVLQSGMDYPHDPHHVF
                     VSDFVDFSIYVDAPEELLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAVNTAAS
                     LWKEINWLNLKQNILPTRERASLIMTKSANHAVEQVRLRK"
     gene            complement(3587..3760)
                     /locus_tag="OQP62_004084"
     CDS             complement(3587..3760)
                     /locus_tag="OQP62_004084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723491.1"
                     /translation="METCVLMQLKNCIKCSIAHILRYKRQKCSNFKQESINFRHFTNR
                     LTRIRRGISTLRR"
     gene            3780..3855
                     /locus_tag="OQP62_004085"
     tRNA            3780..3855
                     /locus_tag="OQP62_004085"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3813..3815,aa:Thr,seq:tgt)
     gene            3864..3948
                     /locus_tag="OQP62_004086"
     tRNA            3864..3948
                     /locus_tag="OQP62_004086"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3898..3900,aa:Tyr,seq:gta)
     gene            4065..4139
                     /locus_tag="OQP62_004087"
     tRNA            4065..4139
                     /locus_tag="OQP62_004087"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4098..4100,aa:Gly,seq:tcc)
     gene            4146..4221
                     /locus_tag="OQP62_004088"
     tRNA            4146..4221
                     /locus_tag="OQP62_004088"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4179..4181,aa:Thr,seq:ggt)
     gene            4337..>4635
                     /gene="tuf"
                     /locus_tag="OQP62_004089"
     CDS             4337..>4635
                     /gene="tuf"
                     /locus_tag="OQP62_004089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="EF-Tu; promotes GTP-dependent binding of
                     aminoacyl-tRNA to the A-site of ribosomes during protein
                     biosynthesis; when the tRNA anticodon matches the mRNA
                     codon, GTP hydrolysis results; the inactive EF-Tu-GDP
                     leaves the ribosome and release of GDP is promoted by
                     elongation factor Ts; many prokaryotes have two copies of
                     the gene encoding EF-Tu; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HCS1723492.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA
                     RAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQM"
BASE COUNT         1176 a         1106 c         1214 g         1139 t
ORIGIN      
        1 aaggctcagt cgaaagactg ggccttttgt tttatctgtg gtctgccggt gagcactctc
       61 ctgaggagga caaatccgcc gggagcggat ttgaacgttg cgcagtaacg gcccgtaggg
      121 tggcgggcag cacgcccgcc ataaactgcc aggcatcaga caagtgaaga agcccatcct
      181 gacggacggg cttttttgcg tgtgtggtaa ctgataaaaa tgtaggcctg ataagcgcag
      241 cgccatcagg caacctgcac cgccggatgg cggctccgcc ttatccggcc tacggcaagt
      301 tcggcacaat gcctgtgtac accgccttat tccgtcgaca taaccgcaag ccttcccaac
      361 ccagatacgg taaactattg ccgattgagt atcaggaaag cagccatgac ccattcccta
      421 aaaccctgga ataccttcgg cattgatcat tgtgcaaagc acatcgtatg cgctgaaaac
      481 gaacaacaac tactgagcgc ctggcagcaa gcaactcgtg agggactgcc ggttatgatc
      541 ctgggtgaag gaagcaacgt cctgtttctg gaaaattacg ccggcaccgt gatccttaac
      601 cgcctgaaag gcattgaggt gaatgaaacc gcggacgcct ggcacctaca cgtcggcgca
      661 ggcgaaaact ggcatcagct ggttcgctat gcgctggaca acaacatgcc cggcctggag
      721 aatctggcgc tcatccctgg ctgcgttggt tcctcgccta tacagaatat tggcgcgtat
      781 ggcgtagaac tacatcgcgt ctgcgactac gttgactgcg ttgaactgga aacgggaaaa
      841 cgtctgcgtt tgtccgcggc ggaatgccgt ttcggctatc gtgacagtat cttcaaaaat
      901 gaatatcagg atcgcgttgc gatcgtcgcg gtgggtctgc gtttgtcaaa gcaatggcag
      961 ccggtgttga cctatggcga tcttactcgt ctggacccga aaacggtcac cgcgcaacag
     1021 gtgtttgatg ctgtatgcca tatgcgcacc acaaaattgc cggatcctaa agtgaatggc
     1081 aatgcgggca gcttttttaa aaatcccgtt gtcgcagccg atatcgctat ggaactgtta
     1141 gaacgatttc ccaacgcgcc gcattaccct caggcagacg gctcagtgaa gctggcggca
     1201 ggctggctga tagatcaatg tcagttgaaa ggcgtcacca ttggcggcgc tgcggtgcat
     1261 cgccaacagg cgctggtatt gattaatgcg aatgatgcga caagtaaaga tgtggtggcg
     1321 ctggcgcatc atgtccggca aaaagtgggt gaaaaattta atgtctggct ggagcctgag
     1381 gttcgcttta ttggtcagtt cggagaggtg aacgctgtgg agagcattgc atgaaagata
     1441 ctaccgttcc cctgacgctg atctcactac ttgccgacgg agagtttcac tcaggcgagc
     1501 agttgggtga acggctggga atgagccgtg cggctattaa taaacatatc cagacattac
     1561 gcgactgggg agtagatgta tttaccgttc ccgggaaagg atatagctta ccggaaccca
     1621 tccagttact ggatgctgac cgtatacata gccaactgga tagcggaaac gtggcggtat
     1681 tgcccgttat cgattcaacc aatcagtatt tacttgatcg aattggcgag ctgcgttcag
     1741 gcgatgcctg tgtagcagaa taccaacagg cggggcgtgg tcgtcgcggg cgtaaatggt
     1801 tctcaccgtt tggtgcgaat ctatatcttt caatgtactg gcgtctggag caggggcctg
     1861 cggcggcaat aggcttgagt ctggtcattg gaattgtgat ggcggaagtg ctgcgtgaac
     1921 tgggcgcaga taaagttcgt gtgaagtggc ctaacgacct ttacctactg gatcgcaaac
     1981 tggcgggtat tctggtcgag ttaaccggta aaacgggcga tgccgcacaa atagtgattg
     2041 gcgctggtat taacatggca atgcgtcgtg tagaagagga cgtgataaat cagggatgga
     2101 tcacactaca agaggccgga attacgctcg accgcaatat gctggccgca aagctgattt
     2161 ataagctacg tgctgcgctt gagctttttg agcaagaagg tctttctcct tatctttcgc
     2221 gctggaaaaa actggataat tttattgatc gtccggtaaa actaattatt ggcgacaaag
     2281 aaatatttgg tatttcccgc ggcattgata ctcagggcgc attattgctt gaacaggatg
     2341 gcgtgattaa accctggatg ggcggagaaa tatcgctgcg aagcgccgaa tagtaaaaaa
     2401 ggggagtcgg tactcccctt ttttctgtta tttccgcaat cttacctgtt ccaccgcatg
     2461 gttagcgctc ttggtcataa taaggctggc acgttctcgc gtaggtaaga tattttgttt
     2521 taaattcaac cagttaattt ctttccaaag cgaagctgct gtattaacag cttcttcttt
     2581 agataatttc gcataattgt ggaaataaga gtcaggatcg gtaaacgccc cttcgcggaa
     2641 tttcaggaag cgattgatat accacgtctg aagaagttct tctggcgcat caacgtaaat
     2701 agagaaatca acgaaatcag agacaaatac atggtgcgga tcgtgaggat aatccatacc
     2761 gctttgtaaa acattcaaac cttcaagaat caatatatca ggctgagcga cggttttatc
     2821 cccttcagga ataacatcgt aaatcaaatg agaatagact ggcgccgtca cgttcggtac
     2881 gcccgacttg aggtcagaaa cgaatttcac cagtcggtgc atatcatacg attcggggaa
     2941 cccctttttc ttcattaacc cgcgttcttt caacacctgg tttgggtgga ggaagccgtc
     3001 tgtggtaatc aattcaacac ggcggtgttc cggccagcga ctcagcaacg cttgcagaac
     3061 gcgtgctgtc gtgcttttac ccactgcgac gctgcccgcg atactgatga tgtaagggat
     3121 tcgctggccg ttagtgccca gaaactgttc caggacagcc tgacgacgca gatttgaact
     3181 gatatagaaa tttagcaaac gggagagagg taaatatatt tctgcaactt cttccagcga
     3241 taaatcttca ttaatgcctt ttaactgcgc gatctcatcc tcggtcaggg tcatcggcac
     3301 agaatcgcga agcgcagccc actggctgcg atcaaactgt aggtaaggcg tcattaacga
     3361 ttgctctttt atactcataa gcatgtttct ggctgctatt gctacatcag ttcagcgatg
     3421 aacgagggcc atccctgaca tgcaacggca cgtcacattt aagttaattt ggacaatggg
     3481 caggagggta acaccagatg gggaggaata ataagaaaaa atctcgctgt gaaagctatc
     3541 cctgagaagc aatgtgacga atataccaga tacagaagat tgctttctat cgacggagcg
     3601 ttgaaatgcc gcgtcgtatc ctggtcagac ggttggtaaa atgccgaaaa tttatgctct
     3661 cttgtttgaa attagagcat ttttgtctct tatagcgcaa aatgtgagcg atagaacatt
     3721 ttatgcaatt ttttagttgc atgagcacgc aggtctccat agaatgcgcg ctacttgatg
     3781 ccgacttagc tcagtaggta gagcaactga cttgtaatca gtaggtcacc agttcgattc
     3841 cggtagtcgg caccatcaag tccggtgggg ttcccgagcg gccaaaggga gcagactgta
     3901 aatctgccgt cacagacttc gaaggttcga atccttcccc caccaccatt ttcggccgcg
     3961 cgatggcgca gcccgagacg ataagttcgc ttaccggctc gaataaagag agtttctctc
     4021 gatattcagt gcagaatgaa aatcaggtag ccgagttcca ggatgcgggc atcgtataat
     4081 ggctattacc tcagccttcc aagctgatga tgcgggttcg attcccgctg cccgctccaa
     4141 gatgtgctga tatagctcag ttggtagagc gcacccttgg taagggtgag gtcggcagtt
     4201 cgaatctgcc tatcagcacc acttcttttc tccttcctgt ttttctcttc tgtttattag
     4261 cattcaacaa gtcgggcgtg ttgcctggtt gatgtggtga tatcaccgat ttatccgtgt
     4321 cttagaggga caatcgatgt ctaaagaaaa gtttgaacgt acaaaaccgc acgttaacgt
     4381 cggtactatc ggccacgttg accatggtaa aacaacgctg accgctgcca ttactaccgt
     4441 actggctaaa acctacggcg gtgccgcccg cgcattcgac cagatcgata acgcgccgga
     4501 agaaaaagcg cgtggtatca ccatcaacac ttctcacgtt gaatacgata ccccgacccg
     4561 ccactacgca cacgtagact gcccggggca cgccgactat gttaaaaaca tgatcaccgg
     4621 tgctgctcag atgga
//
LOCUS       DAJVSD010000293         4496 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.293, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000293 DAJVSD010000000
VERSION     DAJVSD010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4496
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.293"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(8..496)
                     /locus_tag="OQP62_004090"
     CDS             complement(8..496)
                     /locus_tag="OQP62_004090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HCS1723493.1"
                     /translation="MSENKNVQDTHISEQMKALHGALIRVVSALNRPRNDEKLIAEAG
                     IQLDRALFSILISIERLGPIGVVELAERAGRDYTTVSRQVAKLEKLGLIIRQHNVIDR
                     RIREAVISRTGKAMTERIDAAREQMGNVVFKDWPQDKIDIFVRLMQKFADAMDSDASM
                     PE"
     gene            541..1703
                     /locus_tag="OQP62_004091"
                     /pseudo
     CDS             541..1703
                     /locus_tag="OQP62_004091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460506.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
     gene            1693..2934
                     /locus_tag="OQP62_004092"
     CDS             1693..2934
                     /locus_tag="OQP62_004092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1723494.1"
                     /translation="MNTNVYENTDSETITPLNKRRILPVFLLVGLYAASTAAVMSVLP
                     FYIREMGGSPLIIGIIIATEAFSQFCAAPLIGHLSDRVGRKRILIVTLAIAAISLLLL
                     ANAQCILFILLARTLFGISAGNLSAAAAYIADCTHVRNRRQAIGILTGCIGLGGIVGA
                     GVSGWLSRISLGAPIYAAFILVLGAALVAIWGLKDPSTTSRTTDKIASFSARAILKMP
                     VLRVLIIVMLCHFFAYGMYSSQLPVFLSDTFIWNGLPFGPKALSYLLMADGVINIFVQ
                     LFLLGWVSQYFSERKLIILIFALLCTGFLTAGIATTIPVLIFAIVCISIADALAKPTY
                     LAALSVHVSPARQGIVIGTAQALIAIADFISPVLGGFVLGYALYGVWIGIAISVAIIG
                     LVTAMIYLSKSSPLIAKPETE"
     gene            3004..>4496
                     /locus_tag="OQP62_004093"
     CDS             3004..>4496
                     /locus_tag="OQP62_004093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoPQ-activated pathogenicity-related family
                     protein"
                     /protein_id="HCS1723495.1"
                     /translation="MFKRYLWKLCWLAFALVKRGESMKKIYLVVIVLFFISTKVYTLL
                     HNNIFFCRNSPECDLSHVLPDYREQISGTPLKYTLISTAPLAQVVVRHYELLSQHWSP
                     DDMVTPAQWRHNVDIYIPETAKEHHALVVVNNGINYEKGIQIPSKPVDFTQQTLASIA
                     RDTNTIVISVSDIPNQYLTFQDDKKPLKEDESVSRSWALFMEAPEQRELMPLNIPMVT
                     AISQAMRLAKKELTQWNINSFIITGISKRGWTTWLSAIADPDVEAIVPFAIDLLDIDA
                     SLEHIYQSYGGNWPITFYPYYQQGIDEKIKSPTFTQLRQIIDPLRYLNTIYQPRLAIP
                     KYIINASGDDFFVPDNTRFYYSKLPGVKSLRIVPNMNHYSINQFAEGSLVPFINRFQS
                     KKTLPQLIGLIHHHLLTVYFSEAPVKVVRWTANNPNARDFRYACGIRYQPLTIDIPAN
                     NKISITLNEPKTGWEATYIEATFNDGYVATSQVYITPDEKYPQTAPPS"
BASE COUNT         1150 a         1139 c          986 g         1221 t
ORIGIN      
        1 cttttgctta ttccggcatt gaagcatcgc tatccattgc atcggcaaac ttttgcatta
       61 accgaacaaa gatatcaatt ttatcctgag gccagtcttt aaaaacaacg ttgcccattt
      121 gctctcgcgc agcgtctata cgctccgtca tcgcctttcc tgtccgggag ataacggcct
      181 cgcgtatacg acgatcgatg acattatgtt gccgtattat caatcccaac ttctccagtt
      241 tggcgacctg tcggcttacc gtcgtataat cacgaccggc acgttcggct aactcaacaa
      301 cgccaatcgg ccctaaacgt tcgatactaa taaggatcga aaatagcgcg cgatcgagtt
      361 gaatccccgc ctctgcaatt aatttctcat cattacgagg ccggttgagc gcgctcacca
      421 cgcgaatcaa cgcaccgtga agtgccttca tttgctcgga aatatgtgta tcttgcacat
      481 ttttattttc tgacatagca tgtctcctct tatgtgcata atacacatat tggagagacg
      541 atgacaacat acaccactac agatgtactg atctgcggcg ctggcgttac cgggcttact
      601 ttagccatcg aactggcgcg tcacggggtc tcatttcgcc tgattgagaa aagagcgacg
      661 ccttttaccg gttcccgcga taaaggtatt cagccgcgaa cgcaagaaat cttcgaggat
      721 attgggatac tcaataaagt ggtcgccgcc ggcgggctct atccccgatt acgaacctac
      781 cgtcatgacg gaagctacgt agattcagat attgcgcata atacaaaacc gacccacgcc
      841 gaaccctacc atctgccatt gatggttcca cagaacgtga cagaaacgat tatgcgggag
      901 caattaaaag catggggaca tcgggtggag ttcggctgcg agttacgaca ttttgcgcaa
      961 accccacgca cggtcaccgc gtatgttgcc gggccaactg gagaagaggt catcatcgcg
     1021 cattatttga taggcgcgga tggcggcgga agctttgtca gaaagaaatt aggcgtcagc
     1081 ttccccggcc gtacgttggg aatccatgcg cttgtggctg acgcttcact taccagggat
     1141 ggaaaatggc agcctcgcta cggggcgcag gagaagagct tctcgatagc tatgaacagg
     1201 aacgccgccc ggtagccgaa tcactgctcc acctttctac ccgattactt gactctcaaa
     1261 aacagggtgg catcaaacga gaacgcgacg ttcaacaact tgacatccag tataccaact
     1321 cccccttagc ccacacgttg cccgaacgtc agcatgggtt acaagcggga gaaagagctc
     1381 cggatgctcc tcttttgggc gccggcggcc aatcattacg attatttcag ttactccagg
     1441 gtccggactg gaatctgttg gcctacgaaa cccacggtaa ggtcatcgat gcgcggcgag
     1501 gtctgcgtat tcatcacatt ggcgagcagg acgagctcat cgataccctg gggcacttcc
     1561 gggagtccta tcatctggcc ccgggtcaat gcgtgctgat ccgacccgat ggctatgtcg
     1621 gcgcattctt tcacggcaaa cagagcaacg atattgaaaa ttatctctct cgttttgcca
     1681 tagggattaa agatgaatac taatgtctat gagaacaccg acagcgaaac tatcaccccg
     1741 ctcaacaagc ggcgtatttt gcctgttttc ctgcttgtcg gcctttacgc cgccagtaca
     1801 gcggctgtga tgtcggtact gcctttttat atccgcgaga tgggcggttc gccgcttatc
     1861 attggaatca tcatcgccac tgaggctttt agccaatttt gtgcagcgcc cctgattggc
     1921 cacctttccg atcgcgttgg ccgcaagcga atactgattg tcacgctggc tattgcggcg
     1981 ataagtttac tattactcgc caacgcgcaa tgtatcctgt ttatcctgct cgcccgcacg
     2041 ctttttggca ttagcgccgg gaatttgtca gccgccgcag cctatattgc cgattgtacg
     2101 cacgtcagaa atcggcgcca ggcaatcggt atcctcacag gctgcattgg tttaggcggt
     2161 attgtcgggg caggcgtttc cgggtggcta tcgcgtatca gtctgggtgc gccgatctac
     2221 gccgccttta tacttgtcct tggggctgcc ctggtcgcga tttgggggtt aaaagaccct
     2281 tccacaacat cacgtaccac agataaaata gcgtcgttct ctgcccgcgc tattttaaag
     2341 atgccagtcc ttcgcgtctt aatcatcgta atgctttgtc atttcttcgc ctatggcatg
     2401 tactcttcac aattacctgt ttttctttct gacaccttca tctggaatgg gcttcccttt
     2461 gggccaaaag cgttaagcta tctgttaatg gcggacgggg ttattaatat tttcgttcag
     2521 ctatttctgt taggttgggt gagccaatat ttttcggagc gaaagctaat tatcctcatc
     2581 ttcgcccttc tttgtactgg atttctcact gcgggtatcg ccacgaccat accagtgctt
     2641 atttttgcta tcgtttgtat tagcatcgct gatgcgctag ccaaacccac ttatcttgcc
     2701 gccttgtccg tccatgtatc gcctgcccga caaggtatcg tcatcggaac ggcgcaggca
     2761 ttaatcgcaa tcgctgattt tatatccccc gtattgggcg gatttgtcct gggttatgcc
     2821 ctgtatggcg tctggatcgg tatagctatc tctgtcgcca ttattggtct ggtgacggca
     2881 atgatttacc tttcaaaaag ttcaccgcta atagcgaaac cagaaacaga ataatgtgac
     2941 aacgtcacaa gcattattac tcccttcttc ccttatttat caaaagtatt gtacttatat
     3001 tgaatgttta agaggtattt atggaaatta tgctggttgg catttgccct tgtaaagcgc
     3061 ggggaaagca tgaaaaaaat atatctcgtt gttatcgtac tgttttttat ttctacaaaa
     3121 gtttatacac tacttcataa caacatcttc ttttgtcgaa acagcccgga gtgtgatttg
     3181 tctcatgttc tccccgacta ccgggagcag atttcaggca caccgctaaa atatacctta
     3241 attagtacag ctccattagc acaggtggta gtcagacact atgaattatt atcgcaacac
     3301 tggtcgccag atgacatggt aacccctgcg caatggcgac ataacgttga tatttatatc
     3361 cctgaaacgg caaaagagca ccatgctttg gtggttgtaa acaacggaat taattatgaa
     3421 aaaggcatac aaatccccag taaacccgtt gattttactc agcaaacact ggcaagcatc
     3481 gcccgtgata cgaataccat cgtaatatca gtgagtgata tacctaacca atatttaacc
     3541 tttcaggatg ataaaaaacc actgaaagag gacgagagcg tttcccgaag ctgggcatta
     3601 tttatggaag cgccggagca acgtgagtta atgcctttaa atattcctat ggtcactgcc
     3661 atatcgcaag cgatgagatt agcaaaaaag gagttaacgc aatggaatat aaattccttt
     3721 atcattacag gtatttcaaa gcgtgggtgg accacctggt tgtcagctat tgccgatcct
     3781 gatgttgaag caattgttcc cttcgccatt gatctacttg atattgatgc ttcacttgag
     3841 catatttatc aatcatacgg tggaaattgg cccattacat tctaccccta ctaccagcaa
     3901 ggcatagatg agaaaataaa atcccccaca tttacccagc taaggcaaat aatagatccg
     3961 ttaagatatc tcaatactat ttaccaaccc cgccttgcaa taccgaaata tattattaat
     4021 gcaagtggcg atgatttctt cgtaccagac aatactcgct tttattatag caaacttcct
     4081 ggcgtaaaat cattacgtat agtgcctaat atgaaccact actcaattaa ccagttcgct
     4141 gaaggaagcc tcgttccatt tattaaccgg tttcaaagta aaaaaacatt accgcagttg
     4201 atcggcctta ttcaccacca tcttcttacg gtctatttct cagaagcgcc ggtaaaagtc
     4261 gttcgctgga cagccaacaa tccaaatgcg cgtgatttcc gttatgcctg tggcatccgc
     4321 tatcagccgc ttacaataga tattcccgcc aacaataaga tcagtattac gttaaatgaa
     4381 ccgaagacag gttgggaagc tacctatatc gaagccactt ttaatgatgg ctatgtcgcc
     4441 acgagtcagg tttatattac gcccgatgaa aaatacccac agacagcacc accttc
//
LOCUS       DAJVSD010000294         4474 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.294, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000294 DAJVSD010000000
VERSION     DAJVSD010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4474
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.294"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            19..972
                     /locus_tag="OQP62_004094"
     CDS             19..972
                     /locus_tag="OQP62_004094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
                     /protein_id="HCS1723496.1"
                     /translation="MSDNNQAERQPADQHLQDKPQIFRTLRNIDLNLLTIFEAVYVHK
                     GIVNAAKILNLTPSAISQSIQKLRTIFPDPLFIRKGQGVTPTTYATHLHEYISQGLES
                     ILGALDLTGSYDKQRTITIGTTPSVGALVMPIIYQAIRPRYPQLLLRNIPVDDAESQL
                     SQFQTDLIINTHSYNNRSIQHHVLFSDTLEIVCRQHHPCLANAITEERLNSADHTFLM
                     LEGQHLSLLRQRLQETFPDQQISFSSYNIFTIASLIASSDLLGLMPTRFYDLFSRCWP
                     LERLPYAPVNSEQVEFSLHYNKLSLRDPVLENVIDIIREAF"
     gene            1178..2143
                     /gene="lipA"
                     /locus_tag="OQP62_004095"
     CDS             1178..2143
                     /gene="lipA"
                     /locus_tag="OQP62_004095"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HCS1723497.1"
                     /translation="MSKPIVMERGVKYRDADKMALIPVKNVVTERDALLRKPEWMKIK
                     LPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCD
                     VAHGRPVAPDAEEPQKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIRAKS
                     PEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLL
                     ERFKEAHPEIPTKSGLMVGLGETNAEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQ
                     RYVSPEEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK"
     gene            complement(2230..2433)
                     /gene="tatE"
                     /locus_tag="OQP62_004096"
     CDS             complement(2230..2433)
                     /gene="tatE"
                     /locus_tag="OQP62_004096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatE"
                     /protein_id="HCS1723498.1"
                     /translation="MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGTAIKGFKKAMN
                     DEDAGVKKDVDGSVQAEKLSHKE"
     gene            complement(2561..3348)
                     /locus_tag="OQP62_004097"
                     /pseudo
     CDS             complement(2561..3348)
                     /locus_tag="OQP62_004097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003022696.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="deaminated glutathione amidase"
     gene            3439..3822
                     /gene="crcB"
                     /locus_tag="OQP62_004098"
     CDS             3439..3822
                     /gene="crcB"
                     /locus_tag="OQP62_004098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HCS1723499.1"
                     /translation="MLQLLLAVFIGGGTGSVARWMLSMRFNPLHQAIPIGTLTANLLG
                     AFIIGMGFAWFNRMTHIDPMWKVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLN
                     VLINLLGSFAMTALAFWLFSAAAAR"
     gene            complement(3880..4089)
                     /gene="cspE"
                     /locus_tag="OQP62_004099"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
     CDS             complement(3880..4089)
                     /gene="cspE"
                     /locus_tag="OQP62_004099"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator/RNA stability
                     regulator CspE"
                     /protein_id="HCS1723500.1"
                     /translation="MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTL
                     AEGQRVEFEITNGAKGPSAANVTAL"
     gene            complement(4277..>4474)
                     /gene="pagP"
                     /locus_tag="OQP62_004100"
     CDS             complement(4277..>4474)
                     /gene="pagP"
                     /locus_tag="OQP62_004100"
                     /EC_number="2.3.1.251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) palmitoyltransferase PagP"
                     /protein_id="HCS1723501.1"
                     /translation="EDDNFRLGLGFTAGVTARDNWNYIPIPVLLPLASIGYGPATFQM
                     TYIPGSYNNGNVYFAWMRFQF"
BASE COUNT         1134 a         1222 c         1044 g         1074 t
ORIGIN      
        1 tgaattcgga gccagagcgt gagtgataat aatcaggcag aaagacaacc ggccgatcaa
       61 cacctacaag acaaaccgca aattttcaga acactgagaa atattgacct caatctgttg
      121 acgattttcg aggccgtata tgtccataaa gggatcgtca atgcagcgaa aattcttaac
      181 ctgacgccgt cagccatcag ccagtccatt caaaaattac ggactatatt tcccgatccg
      241 ctgtttattc gcaaaggcca gggcgtaacg cccacgacgt atgctacgca tctgcacgaa
      301 tacatcagcc aggggctgga atctattctt ggcgccctgg atcttacggg cagctatgat
      361 aagcaacgca ccattacaat tggcacgaca ccttcggtcg gcgcgctagt gatgccgatt
      421 atttaccagg ccatcaggcc gcgttatcct cagcttttgc tgcgcaacat tccggtagac
      481 gatgccgaaa gccagcttag tcagtttcag accgatctca ttatcaatac ccatagctat
      541 aacaaccgga gcatccagca tcacgtcctg tttagcgata cgcttgagat tgtctgccgc
      601 cagcatcacc cgtgtctggc gaacgccatt actgaagaga gactgaacag cgcggatcac
      661 acctttctga tgctggaggg acaacatctt tccctcctgc gccagcgact gcaggagaca
      721 tttcccgatc agcaaatcag ttttagcagc tacaatattt ttaccattgc ctcgctgatc
      781 gccagcagcg atctgctggg actgatgccc acccgcttct acgacttatt tagccgttgc
      841 tggccgcttg aacgccttcc ctacgcgccg gtgaatagtg aacaggtcga gttctcgctg
      901 cattacaata aactgagtct gcgcgatccg gtgctggaga acgtcattga tatcatccgt
      961 gaggcgttct gacaaaaatg ttgcattcag gtcacggaag atatgggcaa acagcacaaa
     1021 acaacaacta ttttacattt tgccgggctg tcaggctgct ttatggccct tatcaatgat
     1081 atactgcgtg tcacaaattc aaaaatagtt gataaataca actttccctt gaattgaaac
     1141 gctttccttc gttattcgca actggaacac gcacgctatg agtaaaccca ttgtgatgga
     1201 acgcggtgta aaataccgcg atgccgataa gatggctctt atcccggtta aaaatgtggt
     1261 cacagagcgc gacgctctac tacgtaaacc ggaatggatg aaaataaaac ttccggcgga
     1321 ttctacccgt atccaaggca tcaaagccgc aatgcgcaaa aatggcctgc attctgtctg
     1381 tgaggaagcg tcttgcccaa acctggctga atgtttcaac cacggtaccg ctacgtttat
     1441 gatccttggc gccatttgca ctcgccgctg tccgttctgt gatgtcgccc atggccgccc
     1501 cgttgcgccg gatgcggaag agccgcagaa actggcgcaa acgatcgccg acatggcgct
     1561 acgctatgtg gtcatcacct ctgtcgaccg tgacgatctg cgtgacggcg gcgcccagca
     1621 ctttgctgac tgcatcaccg ccatccgcgc caaaagcccg gagataaaaa tagagaccct
     1681 ggtgccagac ttccgtggac gtatggatcg cgcgctggat attcttaacg cgacgccgcc
     1741 ggatgtgttt aaccacaacc tggaaaacgt gccgcgtatt taccgccagg ttcgtccggg
     1801 cgccgattac aactggtcgc tgaaattact ggaacgcttc aaagaagcgc acccggaaat
     1861 tccgacaaaa tcgggtctga tggtgggctt aggcgaaacc aatgcggaaa tcattgaggt
     1921 tatgcgcgac ttacgccgtc acggcgttac catgctgacg cttggtcagt atctacagcc
     1981 aagccgccat cacctgccgg tacagcgtta tgtcagcccg gaagagtttg acgagatgaa
     2041 agcagaagcc ctggcgatgg gctttaccca tgccgcctgt ggcccctttg tacgttcttc
     2101 gtaccatgct gatctccagg ccaaaggcat ggaagtgaaa tgatcgtgta atagacgctt
     2161 acatttcagg caaaaaaaaa ccggcaactc gccggttttt ttactctgcg gagcaagcgc
     2221 attgcgctat tactctttat gcgagagttt ttcagcctga acgctaccgt cgacgtcttt
     2281 cttaacgccc gcgtcttcat cgttcattgc tttcttgaat cctttaatcg ccgtgcccaa
     2341 gtctccgccc agcgtacgta acttcttggt accaaacagc agaacaacca gtgcggcaac
     2401 caccagcagt ttggtaatac taatctcacc catagatacc ttcttcacta aaaacaggct
     2461 gcgtaacgcg ccggattaac ctgagaatat taacggtctt tcgacgcgcg cacacaatag
     2521 caatctgtaa caaggtgaat caagctttgc gtaaaaaaca tcataataat tgcggtggcg
     2581 caaatcgtcg ttgctgcaaa agaggaagtt gctcccgcac ctggtctatt cgttctctga
     2641 atatttccgc gacgatcagc gccggacgat cggctgccgc ggctatcgtt acccccaacg
     2701 gtcgataata cgactttgac caatattacg attaccacac tccccggccg caatcatata
     2761 gcaggtggta tccagcgctc tcgccgccag cagcgtcgac cactgctgct ctttcaacgg
     2821 gccgcgaacc cagcccgtcg gcagcgccaa tacgtcagcc ccctgtaaag ccagcgctaa
     2881 cgccatatcc ggaaagcgca ggtcataaca ggtcataaga cccaccttaa ccccctccac
     2941 gtccagcaca ggcgcgataa cggttccggc atcaatactt tgggattctt gcatcgaaaa
     3001 cgcatcatag agatgcagct tcgcgtaacg cgcgacaatg tgacccgccc gtagcgccac
     3061 cagcatatta accgcccgtc caggcgttga cgggacaagg atagtgaata tcgtcgtcat
     3121 attattatga gcgctttctt ccagaagccg cgtcataaac gcgccatcca gcggctgcgc
     3181 ggcgcgaatc ggcaggtcaa ggtcgatgtc atctcgcgct aatatcccct caggcaacac
     3241 cagaagcgat acgccgcggc ccgccgcctg agccattaac gaaacgcaaa cttgcacatt
     3301 ctcttcccat acagaactca ccacaaactg cccggctgca acgaacatat cccctcccac
     3361 acctctgtca ggactcgcca attatgcgtg ttcggcgtta cactcctctt gtatagcaat
     3421 taaataaagg attcggcagt gttacagctt cttttagcag tttttattgg cggtggaacg
     3481 gggagcgtag cccggtggat gctcagtatg cgttttaatc cgcttcatca ggcgattccc
     3541 atcggtacgc taacagcaaa tttacttggc gcgtttatta tcggcatggg gttcgcctgg
     3601 tttaaccgca tgacacatat cgatccgatg tggaaagtgc tcattacgac cggcttttgc
     3661 ggcggcctga cgaccttttc tactttttct gccgaagtgg tattcttgct gcaagagggg
     3721 cgctttggct gggcgctgct gaatgtgctg attaacctgt tgggttcgtt tgccatgacg
     3781 gcgctggcat tctggctatt ttccgccgcc gcagcgcgtt aagcgcaaaa aaaacccgcc
     3841 gaaagggcgg gttttgaaat cttgctgtcg gacgtatgct tacagagcag ttacgtttgc
     3901 agcggaaggg cctttggcac cgttagtgat ttcgaactct acgcgctgac cttcagccag
     3961 agttttaaaa ccattggtct ggattgcaga gaagtgtaca aacacgtctt tgctgccatc
     4021 ttccggagta atgaaaccga atcctttgga ttcattaaac cacttaacgt tacctttaat
     4081 cttagacatc aaaattacct ttacatgaaa aatagacaca aatgctgtat cggataccag
     4141 tacaacaatt gtgatgcatt ttgtccagtc gaactttgcg aaaaagtgat aaatatcgcg
     4201 ttaattttta gctaacccta tctacttatt gttttttaag gctttttaat tcacaacaga
     4261 acaatgccct tctccgtcaa aactggaaac gcatccaggc aaaatagacg tttccgttgt
     4321 tatacgaacc cggaatgtag gtcatctgaa aggtagcggg accatagcct atcgacgcta
     4381 aaggcaacag cacagggatg ggaatataat tccagttgtc gcgcgcggta acgcctgcgg
     4441 taaagcccag tcccagacga aaattatcgt cttc
//
LOCUS       DAJVSD010000295         4466 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.295, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000295 DAJVSD010000000
VERSION     DAJVSD010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4466
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.295"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..725)
                     /locus_tag="OQP62_004101"
     CDS             complement(<1..725)
                     /locus_tag="OQP62_004101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000211445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723502.1"
                     /translation="MTTQKEMEEIRAALSWFDVRRYDGLKDLTLEQIYAELERRMLAY
                     KTRQQWETAGKDNQMQAIYHDATIRCGDVILKSDWISDNHRLSHSYAVRPMTRVQLFN
                     YGRAMYRLETSEQTDPVAVSSDYISEYLKQGGMNPANKMLIEIDLEEASSDDLAEHLK
                     VLIALWQKHLKTPKPPKRKFRFGHKTFERILDYKVIPLMDLISWEQLYNEGKNIPFTI
                     LADILHGNNGVRSSENIKDTDYD"
     gene            complement(1262..1540)
                     /locus_tag="OQP62_004102"
     CDS             complement(1262..1540)
                     /locus_tag="OQP62_004102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000600594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723503.1"
                     /translation="MILHPAKALLCRGFITIAGDLSPIIASTSGNAPEGENIAPHFTL
                     LERLDPQARINKQIPTVRIDQLKGIIRRLDTEDFRVGQGYRVVTPLSN"
     gene            complement(1630..3084)
                     /locus_tag="OQP62_004103"
     CDS             complement(1630..3084)
                     /locus_tag="OQP62_004103"
                     /EC_number="3.2.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP nucleosidase"
                     /protein_id="HCS1723504.1"
                     /translation="MENKGTNLTPEQALDRLEELYEQSVNALREAIADYVDNGTLPDP
                     HARLNGLFVYPSLSVSWDGATPNPPKTRAFGRFTHPGCYTTTVTRPALFRAYLLEQLN
                     LVYHDYGAHIAIEASHHEIPYPYVIDGSALTLDRSMSAGLTRHFPTTELAQIGDETAD
                     GLFHPGEFYPLSHFDARRVDFSLARLRHYTGTPVEHFQPFVLFTNYTRYVDEFVRWGC
                     SQILDPDSPYIALSCAGGIWITAETEAPEEAISDLAWKKHQMPAWHLVTADGQGITLV
                     NIGVGPSNAKTICDHLAVLRPDVWLMIGHCGGLRESQAIGDYVLAHAYLRDDHVLDAV
                     LPPDIPIPSIAEVQRALYDATKAVSGMPGEEVKQRLRTGTVVTTDDRNWELRYSASAL
                     RFNLSRAVAIDMESATIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANRFYEGAIS
                     EHLQIGIRAIDLLRAEGDRLHSRKLRTFNEPPFR"
     gene            3130..3291
                     /locus_tag="OQP62_004104"
     CDS             3130..3291
                     /locus_tag="OQP62_004104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_448416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoplasmic protein"
                     /protein_id="HCS1723505.1"
                     /translation="MTAKEETKGVSVRAAAVNMNPLKRKENYLSATIIAQKEGYWYSH
                     LLSSLQLVI"
     gene            complement(3280..3606)
                     /locus_tag="OQP62_004105"
     CDS             complement(3280..3606)
                     /locus_tag="OQP62_004105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1493 family protein"
                     /protein_id="HCS1723506.1"
                     /translation="MLDNIEQQVYELVRPYAGTYLFNIKQVELTPEIDLDTDLSIDEL
                     EAEDLMNKFFEKLNVERGNFRIETYFPNHPFSWHPFKKTEPVPVPDFTISMLIESAKA
                     GKWLYD"
     gene            complement(3600..4063)
                     /locus_tag="OQP62_004106"
                     /pseudo
     CDS             complement(3600..4063)
                     /locus_tag="OQP62_004106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002211098.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1193 a         1055 c         1029 g         1189 t
ORIGIN      
        1 taatcataat cagtatcttt gatgttctca ctacttctga ccccattatt accatgcagg
       61 atgtcagcta aaatggtgaa aggtatgttc ttaccttcgt tgtagagctg ttcccatgag
      121 atcaaatcca tcaaagggat gactttgtaa tcaagtattc tttcaaaggt cttatgacca
      181 aacctaaatt ttcgtttcgg gggtttaggc gttttcaggt gcttttgcca tagagcaatc
      241 agtactttca gatgttctgc gagatcgtca ctgctggctt cttccaagtc aatttcaatc
      301 agcatcttgt tagcagggtt catgcctcct tgtttcagat actcagagat gtagtcggaa
      361 ctcactgcaa cagggtctgt ttgctctgaa gtctccagcc gatacatagc ccgcccatag
      421 ttgaacaatt gaactctggt cattggtctt acagcatagc tatgcgacag tctgtgattg
      481 tctgaaatcc agtctgattt aagtatcaca tcaccacatc ggattgtggc atcatggtat
      541 atcgcttgca tttgattatc tttgcctgct gtttcccatt gttgtcttgt tttgtaagcc
      601 aacatccgtc tttcaagctc tgcatagatt tgttctaagg tgaggtcttt aaggccatca
      661 tatcggcgta catcaaacca agataacgct gccctgattt cttccatttc cttttgtgta
      721 gtcattgttc taccgattgc ttttgtgttt cctaaacgtt agcccattca acatgataga
      781 gaaagtggaa aagaggagcg ggttttcaaa atggtgtgag cacagtaagt gaccttggag
      841 gtcagtgctt tcaccttgac taaacatgat ttatttaata aaaaataacc aattgttttt
      901 catcatttat tttaaaaaaa ataacgacaa catcatgttg ataatgaaag caaatttaga
      961 tacgtatagt cagatgatta tggcaacaac caattgtttt taattgacat tttaaccaca
     1021 agaaaacaat aatgatggta aatatgttgg taaaaatatg gctaagttta acaaaagcag
     1081 taataacagg agatgtagat gaagttcgag tccagtcaga ggagccaaat ttctgttttc
     1141 aggcgtactt ataagtccct atttaattag gtttcaataa gttagcgtga aaacctttac
     1201 cgatgcgtat ctggttttac ctgcgcatcc ggtgaaattg gtggtctgat ttggggccat
     1261 ttcagttcga taatggcgtg accaccctat atccctgtcc aacgcgaaaa tcctcagtat
     1321 caagccttct gataatccct ttaagctgat cgattctcac ggtcggtatc tgcttgttaa
     1381 tccgggcttg tgggtccagg cgctcaagga gcgtgaagtg cggcgcaatg ttttcgcctt
     1441 ccggcgcgtt tcctgacgta gacgcgatta tcggcgacag atctccggcg atggtgatga
     1501 agccgcggca caataaggcc ttagcgggat gcagaatcac ctcccgctaa ggcttcattc
     1561 aaccactttc catatcacat aaatatgcct cttccgctcc tgcccaacag caggcgacag
     1621 cccatttcgt tagcgaaacg gcggctcatt aaacgtgcgt aatttacgtg agtgcaaacg
     1681 atcaccttct gcgcgtagta aatcaatagc acgaatacca atttgcaaat gttctgaaat
     1741 agccccctca taaaaccggt ttgcctgccc gggcagttta atttcaccgt gtaaaggttt
     1801 gtcagaaaca caaagcagcg tgccgtaagg cacgcggaag cgatagccct gggctgcaat
     1861 cgtcgcgctc tccatatcaa tcgcgaccgc acggctaagg ttgaatcgca gcgcagatgc
     1921 ggaataacga agctcccagt tacggtcatc cgtggtgacg accgttcccg tgcgcagtcg
     1981 ctgtttcacc tcttcgccgg gcattccgct aaccgctttg gtagcgtcgt acagcgcacg
     2041 ctgtacttcc gcaatgcttg gaatcggaat atcaggcggc agaacagcat ccagcacatg
     2101 atcatcgcgt aagtaggcat gggccagcac ataatcacca atcgcctgac tttctcgtaa
     2161 ccctccacag tgcccaatca taagccagac gtcaggccgc agcacggcca aatggtcgca
     2221 aatcgtttta gcatttgaag ggccgacacc gatatttacc agcgtaatcc cctgcccatc
     2281 tgccgttacc aggtgccagg caggcatctg atgcttcttc caggccagat cggaaatagc
     2341 ctcttccggc gcttccgttt ctgccgtgat ccaaattccg ccggcacagg aaagcgcgat
     2401 atagggactg tcaggatcaa gaatttggct gcatccccag cgcacaaact catcgacata
     2461 gcgggtgtag ttggtaaaca aaacgaaggg ctgaaaatgt tcaaccggcg taccggtata
     2521 gtgccgtaac cgggccaacg agaagtcaac acgacgcgcg tcgaagtgcg ataacggata
     2581 gaattcgccg gggtggaaca gaccgtctgc cgtctcatcg ccaatctgcg ccagttctgt
     2641 ggtaggaaaa tggcgcgtta gcccggcgct catagaacga tccagcgtca gagccgagcc
     2701 atcgatcaca taaggatacg ggatctcatg gtgcgaggcc tctatcgcaa tatgcgcgcc
     2761 ataatcatgg taaacgaggt taagctgttc cagaagataa gcgcgaaata gcgcaggccg
     2821 cgtaacggta gtggtataac agccgggatg agtaaagcgt ccaaaagcgc gtgttttagg
     2881 cgggttcggt gtcgcgccat cccagcttac agacagcgaa ggataaacaa acagtccgtt
     2941 aagcctggca tggggatcgg gcagcgtgcc gttatcaaca tagtcagcga tggcttcacg
     3001 gagcgcgtta accgactgct cgtacagctc ctccaggcga tccagcgcct gctcgggtgt
     3061 caggtttgtg cctttatttt ccatattatt ctccttagcg ttcacaggtg aggcacgtca
     3121 ttcgatagta tgacagcaaa ggaggaaact aaaggggtta gcgtaagggc ggcggcagta
     3181 aacatgaacc ctttaaaaag aaaagagaac tatcttagcg ccaccatcat cgctcaaaaa
     3241 gaagggtact ggtacagcca tttgttaagt tcattacaat tagtcatata accatttccc
     3301 ggcttttgct gactcgatca gcatgctgat agtgaaatct gggacgggta caggctccgt
     3361 tttcttgaac ggatgccatg aaaaagggtg attaggaaaa taggtttcta ttctgaagtt
     3421 acctcgctcg acattgagtt tctcgaagaa tttattcatg agatcttcgg cttcaagttc
     3481 atcaatgctc agatcagtat caaggtcaat ctctggtgtt aattccactt gcttaatgtt
     3541 gaacagatat gtgccagcat aaggccgtac aagctcgtaa acttgctgtt caatattgtc
     3601 tagcataact tatcattgcc ccgagcaatg gtattgtagt cgcgtatagt gcgatatgct
     3661 atttgtgaca catctgcggc aaggataatt tccccgatca aaggaatgga acgtccaaca
     3721 aacggcgcaa tgttacgaac cataacacgt ctggctgtcc acggggtgta accgcctaac
     3781 catgtcggaa gggatattcc aaagggaaat tttgactttt taaacactgc acgtgcagtc
     3841 ctggacgcgt atgatgtgcc tttagtcgct ccagcgggtt tcgcccttgt ccaaagatta
     3901 ttacgacctg ataccagagc aacaacagcc ccgaaatctg caacaccaat cccaaactgg
     3961 cttgcggtat tctcacagaa aatcataaca gaagttcggc agcagtcaga ttggattttc
     4021 ctgcatagaa gtatgttcca tttagttctt ctactgtatc cattagaaac tctatagtta
     4081 ctattttggt ttacttattg tacatccttg tttcgaatga aagaaatcaa tcttttggga
     4141 aagaacggat caagatcacg ggaaatatct gaaatcagat gaaagagaca gtcgcgattc
     4201 ccaccagggg catcacctgg caagcttgtg tgatcgctcc gtttgaatcg aacacctcta
     4261 tatgtcagca tactgatacg ggtttaatct tgcggatagc ggtatcggtt aatgccatag
     4321 gtgggggctc cattttctca gcgaaccgcg aggcccccga ttaagccccc aaaaactatg
     4381 gatgtcaaaa aacccggcag accttctcag gccaaccggg taaagataag ttcttatttt
     4441 ttaaacgtct ccggactcgc caggat
//
LOCUS       DAJVSD010000296         4457 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.296, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000296 DAJVSD010000000
VERSION     DAJVSD010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4457)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4457)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4457
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.296"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            387..1400
                     /gene="trpS"
                     /locus_tag="OQP62_004107"
     CDS             387..1400
                     /gene="trpS"
                     /locus_tag="OQP62_004107"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HCS1723507.1"
                     /translation="MNTLPIILTGDRPTGSLHLGHYVGSLRQRVALQQDHQQYVLIAD
                     LQGLTDNGSNPQKIRDNIPQVLADYLAVGIDPALTTICLQSALPALAELTVLYMNIVT
                     VARVERNPTVKNEIAQKGFTRSLPVGFMAYPISQAADITAFKAEMVPVGDDQLPMIEQ
                     TNEIVHKMNSLFSSPVLRPCQALLSDTGRLPGIDGSAKMSKSLVNTLLLSASEETIHR
                     AVSAMYTDPNHLKISDPGKIEGNVVFTWLDAFHPDKAKVAAMKAHYQQGGLGDRVCKN
                     ELETCLQELIAPIRERRATFIADKGMLMELLKKGSERAHEVTQKTLQEVKRGLGLPTL
                     FQV"
     gene            complement(1401..2174)
                     /gene="uxuR"
                     /locus_tag="OQP62_004108"
     CDS             complement(1401..2174)
                     /gene="uxuR"
                     /locus_tag="OQP62_004108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uxu operon transcriptional regulator"
                     /protein_id="HCS1723508.1"
                     /translation="MKSNTSQQRPYQEVGAMIRDLIVQTPYRPGERLPPEREIAERLN
                     VTRTVVREALIMLEIKGLVEVRRGAGIYVLDSADNNEMEGADVNHCNDAGPFELLQAR
                     QLLESNIAEFAALQATREDIIKMRQALQLEERELASSAPGGSESGDMQFHLAIAEATH
                     NSMLVELFRQSWQWRENNPMWLQLHSHLGDTLYRKEWLGDHKQILAALIKKDARAAKL
                     AMWQHLENVKQRLLEFSNVDDIYFDGYLFESWPLDNVDA"
     gene            2524..3189
                     /locus_tag="OQP62_004109"
     CDS             2524..3189
                     /locus_tag="OQP62_004109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HCS1723509.1"
                     /translation="MIKDTVFFAPSVSGGSNASSLSSRHRRAAIILHEIYGINAHIQR
                     AGHEWMTRGFDIYIPALFPHHTPFRYEQQEEAYRHFSANVGFDPAVVTTLLHDLRAQY
                     ETLIVVGYSVGATLAWLSAASGLCDGVICYYGSRIRQYLHLAPLCPALVIIARYEPAF
                     DPRAMRQTLEKRPRVQCKMYDARHGFCDADSATFDAALSHQVMDDVSAFIRDITCANT
                     SPD"
     gene            complement(3206..3667)
                     /locus_tag="OQP62_004110"
     CDS             complement(3206..3667)
                     /locus_tag="OQP62_004110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HCS1723510.1"
                     /translation="MSTILKPFLSAVTLMLILIRPGFATEDGAITMVKTYSAYDYLQT
                     RARLMHAVADHGLVLFGEFDHARAAQNVNLKMPPTTVLVFGNPKGGTPLMLAHPELAL
                     DLPFRVLISQQADGRTLVSYHPAETLQRYGLDAADIQALKKLEQLVEKSLH"
     gene            complement(3878..>4457)
                     /locus_tag="OQP62_004111"
     CDS             complement(3878..>4457)
                     /locus_tag="OQP62_004111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cytoplasmic protein"
                     /protein_id="HCS1723511.1"
                     /translation="YLRTYEVTLGLEPDKAISELNNIFHEHSLKYRYENGRIVRLRRI
                     KRLKNICYYLYSPGEYGFVEYDLMEAYNRLMLNDFACVVRECHAVFRSVLLRIHERKS
                     IVYHEQDSLNTLMANLMARGVISAEYVHKFHFLIDVLESEIFLPMAPEKSHHHHAMML
                     RISEELACSIYYLTERSIFFLTQRAEEDGVAP"
BASE COUNT         1158 a         1174 c         1016 g         1109 t
ORIGIN      
        1 tactatgtaa atatatttaa tgtttttatc gcgcgcagtg ttatcacagt aataaatgac
       61 ttgcatcaaa aatgcgcctt tcagcgccac gtatttttgg gcagcaaatt ataaaatcgc
      121 gtttcaaagt cagtgacatg ttctctgtgc aggcgatatg actttatgcc cggacgacac
      181 gccagccgct ttacccttac gtttagtcgt gatacgttag accacatgaa cacgaaacga
      241 tccaacgcta cgcaacgtca tctccgctgg tggctgcctt cctgaaggcg gcacggatca
      301 ctatcccttt ttaagtagcc gccgaaaggc ggctactgcg tttcgggacg tctttcggct
      361 ttacagtaag cataaaggag tccttaatga acacccttcc tatcattctg actggcgatc
      421 gccccaccgg ctcgctgcac ctcggccatt atgtcggttc actgcgccag cgcgtcgcgc
      481 tacagcagga tcaccaacag tatgtcctga ttgctgacct gcagggactc accgataacg
      541 gcagtaatcc gcaaaaaatc cgcgataata ttccgcaagt gttagctgac tatctggccg
      601 tcggcatcga tcccgcgcta acgacgatct gcctgcaatc cgcattaccc gccctcgctg
      661 aattaacggt gctgtatatg aatattgtta ccgtcgcccg agtggagcgt aatcctacgg
      721 taaaaaatga gattgcccaa aaaggcttta cccgttccct gccggtcggg ttcatggcgt
      781 atcccattag ccaggcggca gatatcaccg cctttaaggc cgaaatggta ccggttggcg
      841 acgaccaatt gcccatgatt gagcaaacga atgagatcgt tcataagatg aatagtcttt
      901 tctcctcgcc ggtattgcga ccctgtcagg cgctcctgag cgatacgggc cgtctgccag
      961 gcattgacgg cagcgccaag atgtcgaaat cgctcgtcaa taccctgctt ctttccgcca
     1021 gcgaagaaac catccaccgt gcggtcagcg cgatgtacac cgatcccaat catttaaaaa
     1081 ttagcgatcc gggaaaaata gaaggtaacg tcgtctttac gtggctggat gcgttccatc
     1141 cggataaagc caaagtcgcg gcgatgaaag cacattatca acaaggcgga ttaggcgatc
     1201 gtgtctgtaa aaatgagctg gagacctgcc tgcaagaact gatcgcgcca atacgcgaac
     1261 gacgggcaac ctttattgca gataagggaa tgctaatgga attactgaaa aaaggtagcg
     1321 agcgggcgca tgaggtcact caaaagacgc tacaggaagt aaaacgtgga ctgggtctgc
     1381 ccacgctatt ccaggtataa tcaggcatca acgttgtcca gcggccatga ctcaaacaga
     1441 tagccatcaa agtagatgtc atcaacattg gaaaactcca gcagacgctg cttcacgttt
     1501 tccaggtgct gccacatcgc cagcttcgct gcgcgggcgt ctttcttaat taacgccgcg
     1561 aggatctgct tatgatcgcc cagccactcc ttacggtaaa gcgtatcgcc cagatggcta
     1621 tgaagctgga gccacatcgg attattttca cgccattgcc aggactgacg gaagagctcg
     1681 accaacatac tgttatgggt cgcttcggca atggccagat gaaactgcat atcgccgctt
     1741 tctgagccgc ccggcgcgct ggaggcgagt tctcgctctt ccagttgtaa cgcctggcgc
     1801 attttaatga tgtcctcgcg ggtggcctgc agagcggcaa attcagcgat attactttcc
     1861 agcaactgac gcgcctgtaa cagttcaaac ggcccggcgt cattacagtg attgacgtca
     1921 gcgccttcca tctcgttatt atccgcgctg tcgagcacgt agatcccggc gccgcggcgg
     1981 acttcaacca gacctttaat ttccagcatg atcagcgctt cacgcacgac ggtacgcgtc
     2041 acattgagcc tctcagcgat ctctctttcc ggcggcaagc gctccccggg gcggtacggc
     2101 gtctgcacaa tcagatcccg tatcattgcg cccacttcct ggtaaggtct ttgctgagaa
     2161 gtgtttgatt tcatattggt cgtgcccgtc cgatgcgatt tcccggtatc agactatagc
     2221 atttgtaaag agggatagca cgcgtagcac accaaaaacg cgaaactggt caaccaacaa
     2281 aacaataatg cgccccgttt cgttagtgaa gccagatgaa aggaaaggca gtagacaata
     2341 cacgactgat gttccacctt tagccctgat gcctgaatat gaacaacata ttggtttacc
     2401 aatataaaat ttatcaacca aaaattacgc cataaaatgt gtctgtacat tgacaggaac
     2461 aacgcctctg acatagcgtg atcggcgaaa atccagccgc tctctttgta tcaagaacgc
     2521 gttatgataa aagacacagt gtttttcgcc ccaagcgtat ccgggggaag caacgcctcc
     2581 agtttgtcga gccgccatcg ccgggcagcg attattctgc atgaaattta tggtattaac
     2641 gctcatatcc aacgcgcagg ccatgaatgg atgacgcgcg gattcgacat ctatattccc
     2701 gcgctgtttc ctcaccatac cccctttcgc tatgaacagc aggaggaggc ttaccgtcac
     2761 ttttcagcaa atgtcggctt tgatcccgcc gtcgttacca cgttactcca cgatctcaga
     2821 gcgcagtacg agacgttaat cgtcgtagga tatagcgtcg gcgcaacgct cgcatggcta
     2881 agtgcagcca gtgggttatg cgatggcgtc atttgctatt acggttcccg tatacgccag
     2941 taccttcatc ttgcgcctct ctgtccggca ctggttatta tcgcgcgtta tgagccggcg
     3001 tttgatcccc gcgccatgcg acagacgctg gaaaagcgcc cccgggtgca gtgtaaaatg
     3061 tacgatgcgc ggcacgggtt ctgtgatgct gatagcgcca ccttcgatgc cgccttatct
     3121 catcaggtaa tggacgatgt gagcgcattt attcgcgaca tcacttgtgc aaacacatcg
     3181 cccgattgaa gcctgatttt cagctttagt ggagactttt ttcaacgagc tgttccagtt
     3241 ttttcaaagc ctgtatgtct gcggcatcaa gaccataacg ttgcagcgtt tcagcggggt
     3301 gataactgac taacgttcgc ccatcggctt gctggctaat gagcacccga aacggtaaat
     3361 ccagcgccag ttcgggatgc gccagcatga gaggcgttcc gcctttagga ttgccaaaga
     3421 ccagaaccgt tgtcggcggc attttcaggt taacattctg tgccgctctg gcatggtcaa
     3481 attccccaaa taacaccaga ccgtgatcgg cgacagcgtg catcaaccgc gctcgggtct
     3541 gcaaatagtc ataagcgctg taggttttaa ccatggttat cgctccatcc tccgttgcaa
     3601 agccaggcct tattaagatt aacatcaggg ttaccgccga taaaaaaggc tttaaaatag
     3661 tactcattct tctctctccc tgacccaata cccatgagta aatgcgacac agatgatatg
     3721 cggtttaaaa atcagtcatc gtactgtacc ccttattatt gcactgaaca gctcatcact
     3781 aaaaaaacag acggcagaac aaaaaattcc gacgtctgaa caaatttaaa taacgatgat
     3841 ccaatctgac tgagcgacag cgcgatcatt attatgatta tggcgcgaca ccatcctctt
     3901 cagcccgctg ggtaagaaaa aatatactcc gctcagtaag ataataaata ctacaggcca
     3961 actcttcaga gatacggagc atcattgcgt ggtgatgatg cgacttttct ggcgccatcg
     4021 gcagaaatat ttctgactcc agcacgtcaa ttaaaaaatg aaatttatgt acatattcag
     4081 cagatataac gcctctcgcc atcagattag ccattagtgt atttaaacta tcttgttcat
     4141 gatatacgat actttttctc tcatgaattc tgaggagaac gcttctgaag actgcatgac
     4201 attcccttac gacacaggca aaatcattaa gcatcaggcg attatacgct tccataagat
     4261 catattcgac aaagccatac tctccaggag agtacaaata ataacatatg tttttaagcc
     4321 gttttattct gcgcaacctt acaattctac cattttcata tcgatatttt aaactatgct
     4381 catgaaatat attatttaat tcactaatcg ccttatctgg ttctaaccca agcgtaactt
     4441 cgtaggtccg aaggtag
//
LOCUS       DAJVSD010000297         4451 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.297, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000297 DAJVSD010000000
VERSION     DAJVSD010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4451
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.297"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..648)
                     /locus_tag="OQP62_004112"
     CDS             complement(<1..648)
                     /locus_tag="OQP62_004112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723512.1"
                     /translation="MIKKSTYDVSHHSAICGVTGDYYRISATYHIKRSIRVFLIILCC
                     LLPGGVFAGSLINAGLISPDNVNLSIRDFLGFYASDNLQEKDNTLMYVLGVADATEGK
                     TWCGYGQVDSITINHTVLAWLDRYSVKKPDARASVLIEEALVKNFPCQGTEPSVKIAS
                     RSSPVLSLTPDALNLSGNDFFKFWVSGNQLDKLRAGIYLLGVEDATEKKLWCGYDL"
     gene            complement(653..1954)
                     /gene="tssL"
                     /locus_tag="OQP62_004113"
     CDS             complement(653..1954)
                     /gene="tssL"
                     /locus_tag="OQP62_004113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system protein TssL, long
                     form"
                     /protein_id="HCS1723513.1"
                     /translation="MTDSTLTPPAADMMSFLSTTPEHKDSEYETPVHTSQRTELNVIV
                     EDGPDSKLRLAEISAAANPLLAAARPLLCALAAMPAKLDAALVEPYRNLLVREMHLYQ
                     TLCDQANLRREHVLAVRYCLCTALDEAANNTTWGRRGVWAGKSLLVTFHGESEGGIKL
                     FQIIGRLAASFQEHGNVLEVIYHLLGLGFEGRYSVQPDGRKQLDNIRQQLLTQLSQRR
                     DPVMPALSPDFQGAISGRLRRMRRVPVWLSAGIALLAMLTLFGLYSHRMDVQTVTVQQ
                     HIDAIGIKLPPPVPVHKLRLKILLANEIARGLLTVDEDDQHSRVVFRGDAMFVPGQKT
                     VSDAIRPVINKAAREIARVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLT
                     SGGVPAGRVHIVGKGDTVPVADNGSKAGRAKNRRVEILVVE"
     gene            complement(1951..3294)
                     /gene="tssK"
                     /locus_tag="OQP62_004114"
     CDS             complement(1951..3294)
                     /gene="tssK"
                     /locus_tag="OQP62_004114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssK"
                     /protein_id="HCS1723514.1"
                     /translation="MSWNDRVVWSEGQFLLPQMFQQQERYLEHVMHYRSLPLTPFFWG
                     FSHYNIDGEALNIGKLILKEASGIFPDGTPFNAPDHTPLPPPLTILPEHLNQQICLAV
                     PVRAPNSEETTFDNNPESLARFSVHEHDIRDANSLGRGAQLLQLSHLRLRLLPEKAVT
                     GAWIGLPLTRITGLNPDGRIDIDHDLIPPIINYQASSLMCTWLSWINDLIRMRADSLA
                     ERLTGSDNHGHEAAEVSDYLLLQILNRFEPLLTHLAKTPLAPEVLYRYLSELAGELST
                     YVRPQTRRPAEYKEYKHLTPYAGLKSLVDEVQFLLNAVLIRGAQRIELKEGTYGILNA
                     VVAPSDLADFSTLVLAIKASMPTDVLLQHFAAQTKIGPSDRLPELIRSHLPGLALQVL
                     PVPPRQIPFQAGYIYYDIRREGALWEHIARYGGMAMHTAGEFPGLETELWGVRDK"
     gene            complement(3298..3834)
                     /gene="tssJ"
                     /locus_tag="OQP62_004115"
     CDS             complement(3298..3834)
                     /gene="tssJ"
                     /locus_tag="OQP62_004115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system lipoprotein TssJ"
                     /protein_id="HCS1723515.1"
                     /translation="MNEWRNPTRWLCAVAMPFALLLLSGCGSSDALPDLESQRLDLSV
                     KASDKVNPDNQKKAAPIEIRVYELKNDAAFTTADYWSLHDNDKSVLTDDLVRRDSFIL
                     RPGEEKKLRRPLNAQTTAIGVLAGYRNLAKSVWRVTYKIPEAPEKAWYSSFIPGKGKV
                     QLEAELEQSAIVITERDK"
     gene            complement(3901..4386)
                     /locus_tag="OQP62_004116"
     CDS             complement(3901..4386)
                     /locus_tag="OQP62_004116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
                     /protein_id="HCS1723516.1"
                     /translation="MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGS
                     GLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIPQAILVMRKAGGNPLEYLKYTFT
                     DLIVAVVSPSGSHDGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE
                     I"
BASE COUNT          979 a         1247 c         1167 g         1058 t
ORIGIN      
        1 taaatcgtat ccacaccata gttttttctc cgttgcatcc tccacgccaa gcagatagat
       61 acccgccctg agtttatcca gttgattacc agatacccaa aatttaaaaa agtcattacc
      121 tgaaagatta agcgcatccg gcgtcaggga taacacagga gatgaccggg aagcaatttt
      181 tacggagggt tcagtcccct gacaggggaa atttttaact aatgcttcct ctatcagcac
      241 cgaagctctt gcatcaggct ttttcacaga gtaccgatca agccaggcca gcacagtatg
      301 gtttattgtt atactgtcaa cctgaccata tccacaccac gtcttacctt ctgtggcatc
      361 cgctaccccc aacacataca tcagtgtatt atctttttcc tgtaagttat cactggcata
      421 aaaccccaga aaatcccgta tactgaggtt gacattatcg ggggaaatta atcctgcgtt
      481 aatcagggac ccggcaaaaa cgccaccggg taacaggcaa cataagatga tcaaaaaaac
      541 acggatagat cgttttatgt gatatgtcgc tgagatccga taataatccc ccgtcacgcc
      601 acatattgcc gaatgatgag acacatcata ggtcgatttt tttatcattc attcactcca
      661 ctaccagaat ttccacccga cggtttttcg cccgcccggc tttactgccg ttatccgcca
      721 ccggcaccgt atcgcccttg ccgacgatat gtacccgtcc ggcaggtacg ccgccggagg
      781 tcagcaacgc cgcaacttcc gccgcccgtt tttccgatag caccaggttg gatgggaatt
      841 cagccgaatg aatgggctgg ctgtcagtgt gacccgttac agtgactgcg ccgcccacgc
      901 gggcgatttc ccgcgccgct ttgttaatca ctggccggat tgcgtcactc accgtttttt
      961 gtcccggtac aaacatggcg tcgccacgga agaccaccct actgtgctgg tcatcttcgt
     1021 ccacggtcag caggccacgg gcgatttcgt ttgccagcag gattttcagc cgcagcttat
     1081 gaaccggcac gggcggcggc agttttatac caatcgcatc aatatgctgt tgtacggtga
     1141 cggtctgcac atccatccgg tggctgtaaa ggccaaacag cgtcagcatc gccaacaggg
     1201 ctatcccggc gctcagccag accggcaccc ggcgcatccg ccgcagtcgt ccgcttatcg
     1261 ccccctgaaa gtcaggcgag agcgcgggca tgaccggatc gcgacgctgt gaaagctgtg
     1321 tcagcagttg ctgacgaata ttgtccagtt gcttacgccc gtctggctgc acgctgtagc
     1381 ggccttcaaa tcccagcccc agcaggtggt agataacctc cagtacgttg ccatgttcct
     1441 ggaagctggc cgccagacgc ccgatgatct ggaaaagttt tatcccgcct tcgctttcac
     1501 catgaaatgt taccagcagg ctttttccgg cccagacgcc gcgccgcccc caggttgtgt
     1561 tattggcggc ttcatcaagc gccgtacaca ggcagtaacg taccgccagt acgtgctcgc
     1621 gccgcaggtt cgcctgatcg cataatgtct ggtacagatg catctcgcgt accagcagat
     1681 tacggtaagg ctctaccagg gccgcatcca gtttagcggg catggctgcg agagcgcaca
     1741 ataaaggccg ggcagcggcg agcaacgggt tagccgccgc gctgatttca gccagccgga
     1801 gtttgctgtc cggaccgtct tcaacgatga cattgagttc cgtgcgctgg ctggtgtgta
     1861 ccggcgtttc atattcactg tccttatgtt ccggcgtggt ggacaaaaag gacatcatgt
     1921 ccgccgctgg cggcgtcagg gtactgtctg tcatttatcg cgcactcccc acagttctgt
     1981 ctccagcccc ggaaattccc cggcggtatg catggccatc ccgccgtaac gggcaatgtg
     2041 ttcccacaat gctccctcgc ggcggatgtc gtaatagatg tatccggcct gaaacgggat
     2101 ttggcgcggt ggtacaggca gaacctgcaa agccagcccc ggcagatgcg agcggatcag
     2161 ttccggcagg cgatcggatg gcccgatttt ggtctgggcg gcaaaatgtt gcagtagcac
     2221 atcggtcggc attgaagcct ttatcgccag taccagcgtg ctgaaatcgg caagatcgga
     2281 aggggccacc accgcattca ggataccgta agtcccctct ttcagctcga tgcgctgcgc
     2341 gccccggatc agtaccgcgt tcagcaggaa ctgcacctca tcaaccagcg atttcaaccc
     2401 ggcatagggc gtcaggtgtt tgtactcttt gtattcagcg ggccgtcgcg tttgtggacg
     2461 cacataggtg gagagttccc cggccagttc ggacaggtag cgatacaaca cttccggggc
     2521 cagcggggtt ttcgccaggt gagtcagcag cggctcaaag cgattgagaa tttgcagcag
     2581 caggtaatcg gagacctccg ctgcttcatg gccgtggttg tcgctgccgg tcagccgttc
     2641 cgccagcgaa tcggcccgca tccggatgag atcgttgatc cacgacagcc aggtacacat
     2701 cagtgaactg gcctgataat taatgatggg cgggatcagg tcgtggtcga tatctatccg
     2761 cccgtcaggg ttcaacccgg tgatgcgggt caacggcagg ccaatccagg cgcccgtcac
     2821 cgccttttcc ggcagcagcc gcaggcgcag atgactgagc tgtaataact gcgcgccacg
     2881 tcccagcgag ttggcgtcgc ggatgtcgtg ttcatgtacc gagaaacgcg ccagtgattc
     2941 cgggttattg tcaaacgtgg tttcttcgct gttcggcgcg cgtaccggta ccgccagaca
     3001 aatctgctgg ttcaggtgct ccggcaggat ggtcagcggc ggcggcagcg gggtgtggtc
     3061 cggtgcgtta aacggcgtgc cgtcaggaaa aatccctgat gcctctttca gtatcagttt
     3121 accgatgttc agcgcttcgc catcaatatt gtagtggctg aatccccaga aaaagggagt
     3181 cagcggcagg ctgcggtaat gcatgacgtg ttccagataa cgctcttgct gctgaaacat
     3241 ctgcggcagt aaaaattgtc cttcactcca gactacgcgg tcattccagc tcataattca
     3301 tttatcccgt tccgtaatta caatggcgct ttgttccagt tccgcctcca actgcacttt
     3361 tcctttcccc ggtatgaagc tgctgtacca ggctttttcc ggggcttccg ggattttgta
     3421 ggttacccgc cagaccgatt tggccaggtt acggtatccg gccagtacgc cgattgccgt
     3481 ggtctgcgca ttcagcgggc gacgcagttt tttctcttcg ccgggacgca aaataaagct
     3541 gtcgcgacgc actaaatcgt cggtaaggac ggatttgtcg ttgtcatgga gcgaccagta
     3601 atcagctgtc gtgaaagcgg cgtcattttt tagttcataa acacgtatct caatgggcgc
     3661 ggccttcttc tgattgtcag gattcacctt atcggaggct ttcacgctca ggtcgagtcg
     3721 ctgtgattcg aggtcaggta acgcatcgct actgccgcat ccggaaagca ggagcagtgc
     3781 aaaaggcata gctaccgcac ataaccaccg agtggggtta cgccattcat tcactgtaaa
     3841 ttcctttaaa atcaaaacaa taaatccggc cagatataaa tctggccgga aaaacagccg
     3901 ttaaatttct ttgttcgcct tgaagtcgta acctgcggtg atagtgccgc cgctgccgcc
     3961 ctgctggttc tgcaccacgt attcctgttt cacagtgctg aaagaaagct cgaccgtttc
     4021 acgggaggcg atttcaccat cgtggctgcc gctcggggaa accacggcga caatcaggtc
     4081 ggtgaaggta tacttgaggt actccagcgg attgccgcca gccttacgca taaccagaat
     4141 ggcctgcgga atgtgcttgc cggaggcgca gtatttgaac aggttcgggc tggcgcgatc
     4201 gatatagtga tcaaaatcca gattagtgac ggagacctta ccggagccga ggccgctacc
     4261 ggcgtgcatg gtggattcct gatgaatatt ccagcgccag ctcagtactt caatttcatt
     4321 tttgtgtttg tcatccattg actcgccatc aatgccgtca atttttaaaa aaatgtcata
     4381 agccattttt atatccttat taagttttac ttaaaataaa cctggtttat cctgataatt
     4441 tgcgcagaaa t
//
LOCUS       DAJVSD010000298         4409 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.298, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000298 DAJVSD010000000
VERSION     DAJVSD010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4409
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.298"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            210..1928
                     /locus_tag="OQP62_004117"
     CDS             210..1928
                     /locus_tag="OQP62_004117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
                     /protein_id="HCS1723517.1"
                     /translation="MNKKNSSMVNLPAPRESINQKIDTNNALVLNHNAIYEQRLAEIT
                     QSNTCDKAIVTVNPYGTAPLSLYLGIWIDEAAALEINVVDSEATTEAVRYQYDVHPGA
                     NLIPVCGMVSAVNNQITLRLASQIVGQYTVMTDALPPTDSANVSLGFPIISVSCPAQQ
                     ASLMEEGLYFSTYFDRYNLAFDHNGIVRWYVSQEIPSYNFVRMDNGHFLATSQGINHC
                     LNMYEFDIMGRVYTVYLLDNEFHHSILPIENNLAIAPSEYSNGRPDGYSTGKDGVSII
                     NLSTGLEVAYYDMLYVMDYSRSPRPSGSAPGQDVSMDDWLHINQSYINEPNNLLICSG
                     RHQSAIFGVNVDSGELRFIMANHEDWSDEFKQYLLTPVDDDGVPLYDLTSPGGIDAAD
                     KNFWTWGQHNIVEIPNDEPGILEFMVFDNGNYRSREDAKSLLPLDNFSRVVQFKINLN
                     TMTVTRPYEYGKTEVGNRGYSSFVSAKHLLTNGHLVIHFGATTVDEFEHTITAQPGSS
                     DLVDPDEGQQALGRLVLQEINKETKEVLFEAMVTSGYFKNEETNGTNYRYDISAFRVY
                     KMPLFA"
     gene            complement(1974..3545)
                     /locus_tag="OQP62_004118"
     CDS             complement(1974..3545)
                     /locus_tag="OQP62_004118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HCS1723518.1"
                     /translation="MVYMNKKFSISLLSLCIGLSSAISFSADARDITIYYTNDLHAHV
                     TPEIIPYVSKTRPVGGFAPISKIVKDAKAKEKDVFFFDAGDYFTGPFISTLTKGEAII
                     DILNTMPYDAVSVGNHEFDHGHENLVKQLSKLQFPVLLDNVFYSGTDTPLIKEPYTIV
                     EKDGFKIGVIGMHGVSAFYEAIAAGVREGVDCRDPIPYVKKQLEELKGKVDLTVLLAH
                     EGVPGMQSSAGEADVARALKTDVDMAKSLEGYGLNVLITGHAHKGTPEPIKVGDTLVV
                     STDAYTIELGKLVLDWNPETKKVDSYNGKLITMYADTYKPDPVTQAKIDEWDNKVKKI
                     TDEVVAHSPEVLTRSYGESAPTGNLITDALMATVPGADASFYNAGGIRTELPKGNITY
                     GDVLSMYPFTNDVMSMEISGKDLKSIMSHAADLKNGMLHVSKTVQFKYDSTKPLGQRI
                     VEFDIKGKPVEDNKLYTVALDSFIGKGGGGFTFTKGKNIKYIGIQTAPALVNYMKQVN
                     NIQPDHTMRVDDISK"
     gene            complement(3644..4405)
                     /locus_tag="OQP62_004119"
     CDS             complement(3644..4405)
                     /locus_tag="OQP62_004119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723519.1"
                     /translation="MKNKKYINSLLAACVLFSCFNGQAAELKRVYGKLSFGYGDWNKG
                     FVNVDRGEVWKAVADFGAVFDRGEFASFYEMNVLNHPVEGRNHVTQFLGHYRVVEGSN
                     FTAMMKLYMSMENKFGDELNMMYGVGYLGLTSPSGFIKPYFAVHNLSNDYTSKKYGQA
                     TGFNGYVLGWVAAYNFDMFNEKFVISNWNEVEMDRNDAYAEQQGGTTGLNGAVTFTWK
                     FMPRWTASVSYRYFNNKLGYNGYGDRMNYLIGFKF"
BASE COUNT         1172 a          981 c         1003 g         1253 t
ORIGIN      
        1 ctacataatt gttatgcttt tatattagcg ccagggaaat aaaatcttcg gacaataaag
       61 aatagtttta gtctgggtgt tattttatgg atattttatt ttaaattatt aaaccgattt
      121 ctcttgttga cgtagggtta tttgctaagc aacgggctgg cttgttgtgg ccgctcgttg
      181 tctatatctg aattaataag gaaaaacgta tgaataagaa aaattcgtca atggttaact
      241 tgcccgcacc gcgtgagtcg attaaccaga aaatcgatac caataacgca ttggtgttaa
      301 atcataacgc catatatgaa caacgattag cggagatcac gcaatctaat acctgtgaca
      361 aggccattgt caccgtaaat ccctacggga ccgccccgtt gagtctctat ctgggaattt
      421 ggattgatga agctgccgcg cttgagatca atgttgttga tagcgaagcg acgacagagg
      481 cagtgcgtta tcaatatgat gtacatccgg gcgctaacct tattcctgtg tgtgggatgg
      541 tatccgcggt gaataatcag attaccctac gccttgcctc gcaaattgtc gggcaatata
      601 cagtaatgac tgacgcatta ccgcccacgg attcggctaa cgtgagcctc ggcttcccca
      661 ttattagcgt ctcctgtcct gcgcagcagg cctcgctgat ggaggaaggg ctttatttct
      721 ctacttattt tgatcggtat aatctggctt ttgatcataa cgggattgtc cggtggtatg
      781 taagtcagga aatcccttct tataattttg tcagaatgga taacggccat ttcctggcga
      841 cgtcacaggg aataaaccat tgtctgaata tgtatgaatt tgacattatg ggacgggttt
      901 atacggttta tcttctcgac aatgagttcc atcactccat tcttcccatt gagaacaatc
      961 tggcgattgc gccttcagaa tatagcaatg gacggccaga tggttactca accgggaaag
     1021 atggcgtttc tattattaac ttatctaccg gacttgaagt cgcctattac gatatgctgt
     1081 atgtgatgga ttattccaga tcgccgcgtc cttccggaag cgcgccaggt caggacgtat
     1141 caatggatga ctggctgcat atcaaccaaa gctatattaa tgaacccaac aatttgctga
     1201 tctgttccgg tcgacatcag agcgcgattt ttggcgtaaa tgtggattcc ggcgaactgc
     1261 gctttattat ggcgaaccat gaggattggt ctgacgaatt caagcaatac ttattaactc
     1321 ctgtcgatga tgatggcgtc ccgctgtatg atcttacctc gccgggaggg attgatgcgg
     1381 cagataagaa tttctggacc tgggggcagc ataacattgt tgaaattcca aatgatgagc
     1441 ctggtattct ggagtttatg gtctttgata atggtaacta tcgttcacgc gaagatgcga
     1501 aaagtttgtt gccgctcgat aacttcagcc gggtggtgca gtttaaaata aacctaaaca
     1561 cgatgaccgt aacgcgtccg tatgaatatg gtaaaacgga agtcgggaac cggggctata
     1621 gcagttttgt gagcgctaag catttattga ctaatggtca cctggttatt cacttcggcg
     1681 cgacgacggt tgatgagttt gaacatacca ttaccgcgca accaggctcc agcgatcttg
     1741 tcgatccgga tgaagggcaa caggcgttag gtcgactggt attacaagaa atcaataaag
     1801 agacgaaaga ggtcttattc gaagcgatgg tgacgtcggg ctatttcaag aacgaagaga
     1861 cgaatggcac gaattatcgt tatgatattt ctgcatttcg ggtatacaaa atgccgctgt
     1921 ttgcataact aagtatgtta tgcggccggt tatcgaccgc ataacattat ggcttatttg
     1981 ctaatatcat ccacgcgcat ggtgtggtca ggttgaatat tgttaacctg cttcatatag
     2041 ttaaccaacg ccggtgcggt ttgtatccct atatatttga tatttttacc tttagtgaag
     2101 gtaaatccgc caccaccttt accgataaag gaatccagcg cgacggtata gagtttattg
     2161 tcttctaccg gtttgccttt gatatcaaat tcaacaatac gctggcccag cggtttggta
     2221 ctgtcatatt taaactggac ggttttagat acgtgcagca taccgttttt cagatcggca
     2281 gcgtgtgaca tgatggattt caggtcctta ccgctgattt ccatgctcat gacatcgttg
     2341 gtgaacggat acatactcag cacatcacca taggtgatat tacctttagg caattcggta
     2401 cggatgccgc cagcattata gaaggaagcg tcggcgccag gaacggtagc catcagggca
     2461 tcggtgatta agttgccggt tggcgcggat tcaccgtaag aacgggtcag cacttccgga
     2521 gagtgcgcga ccacttcatc ggtaattttc ttaaccttgt tatcccattc gtcaattttg
     2581 gcctgcgtga ccggatctgg cttataagta tccgcataca tggtgatcaa cttaccattg
     2641 tagctgtcca cttttttggt ttccgggttc cagtcaagca ccagtttacc taattcgatg
     2701 gtgtacgcat ccgtggaaac gacaagagta tcgcccactt taatcggttc tggcgtacct
     2761 ttatgcgcat ggccggtaat caggacgtta agtccatagc cttccagcga tttcgccata
     2821 tcaacgtcgg ttttcagtgc gcgtgcgaca tcagcctcgc ccgcgctgga ctgcataccc
     2881 ggcacgcctt cgtgggcgag cagcacggtc aggtcaactt tcccttttaa ctcttccagc
     2941 tgttttttca cataaggaat cggatcgcgg cagtcaacgc cttcacgcac gcctgcggca
     3001 atcgcttcat agaatgcgga aacgccgtgc ataccgatga cgccgatctt gaatccatct
     3061 ttttccacaa tggtatacgg ttctttaatt aatggcgtat ctgtgccgct gtaaaaaaca
     3121 ttatccaaca ataccgggaa ttgcaatttg ctgagctgtt taaccagatt ctcatggcca
     3181 tggtcaaatt catggttacc gacagagacg gcgtcgtaag gcatggtatt taaaatatca
     3241 ataatagcct cgcctttggt cagcgtactg ataaaaggtc cggtgaaata gtcgccagca
     3301 tcaaagaaaa agacatcttt ctctttcgct tttgcatctt tgacaatttt cgagatgggc
     3361 gcaaagccgc ctaccggacg tgtcttggat acatagggga taatttctgg ggttacatgg
     3421 gcatgtaaat cgttcgtata ataaattgtg atgtcacgcg catcggctga aaaggaaatg
     3481 gctgaagaca aaccaatgca cagcgacagt agggatatcg aaaacttttt gttcatataa
     3541 accatccatt tacgctacat taaagaaaaa caatgcctgt agtcgtgtca ttcacgacta
     3601 caaaccgggg aaattaagta atattcatca agtttattaa ttattaaaac ttgaagccga
     3661 tcaggtaatt catacggtcg ccgtagccgt tataccccaa tttattattg aagtaacggt
     3721 aagagacgga ggcggtccat cgcggcataa atttccatgt aaacgttacc gcgccgttca
     3781 ggccggtcgt cccaccctgt tgttcggcgt aggcatcatt acgatccatt tcaacttcgt
     3841 tccagtttga aatgacgaac ttttcattaa acatatcgaa gttataagcc gcgacccaac
     3901 cgagaacata accgttaaag cctgtcgcct gtccatactt tttagaggta taatcgttcg
     3961 ataagttatg aacagcgaaa tagggcttaa taaagcctga tgggctggtt aaacccagat
     4021 aacctacccc gtacatcatg tttaattcat caccgaattt attctccatc gacatataga
     4081 gtttcatcat tgcggtaaag ttagagcctt ctactaccct ataatgtccc agaaattggg
     4141 taacatggtt acggccttct accggatggt tgagcacgtt catttcataa aatgatgcaa
     4201 attcgcccct gtcaaacacg gcgccgaaat cggctaccgc tttccacact tcgccgcgat
     4261 cgacattgac aaagccttta ttccagtcgc catatccgaa gctaagttta ccgtatacgc
     4321 gtttcaattc cgctgcctgg ccattaaagc aagagaaaag aacacatgcg gcgagtagac
     4381 tattaatata tttcttattt ttcatgctc
//
LOCUS       DAJVSD010000299         4396 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.299, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000299 DAJVSD010000000
VERSION     DAJVSD010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4396
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.299"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            19..2888
                     /gene="misL"
                     /locus_tag="OQP62_004120"
                     /pseudo
     CDS             19..2888
                     /gene="misL"
                     /locus_tag="OQP62_004120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462656.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="intestinal colonization autotransporter adhesin
                     MisL"
     gene            complement(2983..3447)
                     /locus_tag="OQP62_004121"
     CDS             complement(2983..3447)
                     /locus_tag="OQP62_004121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723520.1"
                     /translation="MLACLTLLFLGVGLGHLFHLYTEKNRDPEKCTAPVIVFYNNTQA
                     NLTLDFMYSLKKRTGVVSISGTYYVDNKMSGVIRRDVSYVWSENKDSTHFISTDINKV
                     TRDETLSDAVIETVLPDFYVYPGKSISYTILTQGHRGFMFTIGKRPIFFCTH"
     gene            complement(3458..4314)
                     /locus_tag="OQP62_004122"
                     /pseudo
     CDS             complement(3458..4314)
                     /locus_tag="OQP62_004122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462658.4"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
BASE COUNT         1152 a         1101 c         1117 g         1026 t
ORIGIN      
        1 cataatgcag gaggcagaat gccaactccc caaaattact cattcatcgc catagcggta
       61 tcagcagcat tagcctctat ggtatttccc tcccaggcgg cctgggttga cgttgatagt
      121 ctgccatcca gtgggctggt cagccagctg ccgccggaat tacaggctat tattcccgct
      181 caggccagta ccggtttcac caaagtcggt accatgccca actacgttta tcagtggaac
      241 accggcacca tcccggttta tggcaatggc ctcacgctta atgggccggg tgcggaggcg
      301 tttgaacaca ctgtcacggt tattcagaac agcgggacgg gaagtccggg cgtgattttt
      361 ggcaacgacc tgaccattcg gacgcagtcg gcgaatgccg cgaataatgg tagagacgtc
      421 gatggcatcc gtactcacgg cgcaaatact ccggataacc cggtatttat tattaccggt
      481 gaccgtacca acatctacgt ggatggtcag gatggtgacg gtattaacgc cggatataac
      541 tcactgggcc agggttggac cggatcggcc aatatttacg tcggcgacga tctgtatatc
      601 aaaacgaccg gtagccaggg acgtggaatt acagctaacg ccatgcggga tgcgtcacgt
      661 gccaaaaata cgattgtcgt cggcaatcgt gtgcacatat agttactacc ggcgacagtt
      721 cggaggggct gcgtaccgga caaagcggtt cgttgattcg tctgggtgac gatgcaacca
      781 tcgaaacctc cggcgcatcc tcaacgggga tttacgcagc atcctcctcc agaaccgagc
      841 ttagcaacaa cactactatt acggtgaacg gtgccagcgc acacgcggta tatgcaacta
      901 acgctaccgt taatttggga gagaatgcca ctattagcgt taacagcgcc agtaaggctg
      961 catcctatag taaagcccct gccggtttat acgccctctc ccgaggcgcc attaatctgg
     1021 caggcggtgc ggctattact atggcgggcg ataacagtag cgaaagttac gccatcagca
     1081 cggaaactgg cggcattgtt gacggttctt caggaggtcg tttcgtcatc gacggtgata
     1141 ttcgtgctgc tggcgccacc gctgccagcg gtacgctacc gcagcagaac agtacgatta
     1201 agctcaatat gacggacaac tcgcgatggg acggggcgtc gtacatcacc agcgctacgg
     1261 cgggcacagg cgttatctct gtacaaatga gcgatgcgac ctggaatatg accagcagct
     1321 caacgctcac tgacctgacg ctgaatagtg gcgcaatcat taacttcagc catgaagatg
     1381 gcgaaccatg gcaaacgctc accatcaatg aagattatgt aggcaacggc ggtaagctgg
     1441 tctttaatac tgtgctcaac gatgatgatt ccgaaacgga caggctgcag gttctcggca
     1501 atacttcagg caacacattt gttgcagtaa ataatattgg aggagccggg gctcaaaccg
     1561 ttgaaggtat tgaaattgtt aacgttgctg gcaattccaa cggtactttc gaaaaagcaa
     1621 gtcgtattgt tgccggagcc tatgactaca acgtggtgca gaaaggtaaa aactggtatc
     1681 tgaccagcta cattgagccg gacgaaccga ttattcctga tccggtagac cctgttattc
     1741 ctgaccctgt cattcccgat ccggtagacc ctgatccagt agacccggtt atccctgacc
     1801 ctgttattcc cgatccggtg gaccctgatc cagtagaccc tgatccagta gacccggtca
     1861 tccctgatcc ggtcattcct gacataggac aatctgacac accgccgata acagaacatc
     1921 agttccgtcc ggaagtgggc agctatcttg ccaacaacta tgcggcaaat acgctgttca
     1981 tgacgcgtct ccatgaccgt ctgggtgaaa cccagtacac cgacatgctg acgggtgaga
     2041 agaaggtcac cagcctgtgg atgcgtaacg tcggcgccca tactcgcttc aacgatggca
     2101 gcgggcagct aaaaacccgc atcaacagct atgtgttaca actgggaggc gatctggcac
     2161 agtggagcac tgacagtctt gaccgttggc atattggtgc aatggcaggt tatgccaaca
     2221 gccagaaccg cacgcagtcg tccgtgagtg actatcattc ccgtggtcaa gtcaccggtt
     2281 acagcgtcgg cctttacggc acctggtatg ctaacaatat cgatcggtct ggggcttatg
     2341 tggatacctg gatgctgtac aactggtttg ataacaaggt catgggtcag gatcaggccg
     2401 ctgagaaata taaatccaaa ggaattaccg cctcggttga agccggttac agtttcaggt
     2461 taggtgaaag cgcgcatcaa agctactggt tgcagcccaa agcgcaggtg gtatggatgg
     2521 gcgtgcaggc taacgaccat cgcgaagcca atggtaccct cgtcaaggat gataccgccg
     2581 gtaatctgct aacccgcatg ggcgtaaaag cctatattaa cggccacaat gctattgatg
     2641 acaataaatc tcgagagttc cagccattcg tggaagcgaa ctggatccat aatacgcagc
     2701 ctgccagcgt gaagatggac gatgtcagca gcgatatgcg tggtacgaaa aatattggtg
     2761 aactgaaagt gggtattgaa ggacaaatta ccccgcgcct gaacgtatgg ggtaacgtgg
     2821 cgcaacaggt aggtgaccag ggctatagta atacccaagg cctactgggg gttaaataca
     2881 gtttctgatt caggtaacaa cagagccgct gatcttcagc ggcttttacc cggaagcgct
     2941 ttcatttggc tgatacgttc catgaacggc tcccaaaacc gcttaatgtg tacagaaaaa
     3001 tatcgggcgt ttcccgatgg tgaacataaa gccacgatga ccctgagtca ggatggtgta
     3061 actgatactt ttccctggat agacataaaa atcgggtaaa accgtctcga taaccgcatc
     3121 ggacagtgtt tcgtcacgcg tgactttgtt gatatccgtc gatataaaat gggtgctgtc
     3181 tttattttca ctccatacat aggaaacatc acggcggatc acgccgctca ttttattatc
     3241 gacgtaatac gttccgctga tggaaaccac tccagtgcgt tttttcagcg aatacataaa
     3301 gtccagcgtc aggttagcct gagtgttgtt ataaaacaca atcacaggcg ccgtacattt
     3361 ctctggatcc cggttctttt ccgtatataa atgaaaaaga tgcccaagcc ctacacccag
     3421 aaacagtagc gtcaggcagg ctaacatcag tgccttttta cccatgtgtc accccgcgga
     3481 aaaaaagcgt cacgcagcct gtatcaccgc gcgttttata aggttgctga caaatcaatg
     3541 ccgtaaccgc tggggtgcga ctgctggaag ggaaatagac ccatgggtat ttctgacaat
     3601 ccataccggt ttttagaatc attaacttat agcctgcaaa gcggctaccg ctttcgatat
     3661 cttcattccg cgagaaaaaa tgacagccct gagttgtttc aaccagcgtg tagcgatcat
     3721 aaaaatcctt atcaggaacg gtttgccagc tgatagtgcc aagcaaaata ccgacagcaa
     3781 atgtcccggt catccaaagt acaggtacat aatgtttaaa ccaacgccct gacatacgcg
     3841 gtggcgcctc accctttttt ctattgtctg agcgaagtct ttgcggatgg tcatgaggct
     3901 cacaccaggc tcaatctgaa agcctctacg cggaaccgtg attatcagcg tatcttcatt
     3961 ttcgccaacg gtacgtaatc cgcggcgaat aatggagata ttctgataaa gcgtatttgc
     4021 cgacaccacc atgccgtctt cttcctatac tttttgaaag aatgtttgtt gtgagacgac
     4081 ggagggggcg ttttccagca gaaggcgcaa gcagcggctg gcgggcgttg tcagaataat
     4141 gttgagatct ggcctcgata atgacgccag gcgattcatt tctggattaa attcaatatt
     4201 atcgttaatt atccataaca tcgcattgtt accatgccaa aacataacgt agttggagag
     4261 ggttaataga caccactgag tatagtctga tgctgtggct gcgtagcagg acatggattg
     4321 tcccctgcac ataccgatca tatagaagag cgagaggcat aagacattaa caggtaagcg
     4381 tagacaccgc ttttct
//
LOCUS       DAJVSD010000300         4372 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.300, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000300 DAJVSD010000000
VERSION     DAJVSD010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4372
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.300"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            270..413
                     /locus_tag="OQP62_004123"
     CDS             270..413
                     /locus_tag="OQP62_004123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YobF family protein"
                     /protein_id="HCS1723521.1"
                     /translation="MCGIFSKEVLSKHVDVEYRFSAEPYISASSSNVSVLSMLCLRAK
                     KTL"
     gene            426..635
                     /gene="cspE"
                     /locus_tag="OQP62_004124"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
     CDS             426..635
                     /gene="cspE"
                     /locus_tag="OQP62_004124"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator/RNA stability
                     regulator CspE"
                     /protein_id="HCS1723522.1"
                     /translation="MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTL
                     AEGQNVEFEIQDGQKGPAAVNVTAI"
     gene            855..2600
                     /gene="ftsI"
                     /locus_tag="OQP62_004125"
     CDS             855..2600
                     /gene="ftsI"
                     /locus_tag="OQP62_004125"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase FtsI"
                     /protein_id="HCS1723523.1"
                     /translation="MKKKSDGDTRNFTPIRFALLCTAILLSMALLLGRVAWLQIVTPS
                     KLVKQEDMRSLREVTTASPRGMITDREGRPLAVSVPVNAVWADPKTIISKGGVGYNER
                     WQALASALHLSLSTLAERVNSNPAGRFIYLARQVSPQQAEWIDKLNLPGINLREESRR
                     FYPAGHVAANLIGFTNIDGQGIEGIEKSFNAQLTGKPGSRLVRKDKFGHVIENITEVN
                     PVPAHELQLSIDERLQTVTEDALDNAVIWNKAESGAAVLINIPTGEILSMASYPDFNP
                     NNREGAQLDDFRNRAISDTFEPGSTVKPLVIMTALQQGIVQPDSVIDTHPFTLDGHRI
                     RDVGYYPELTLTGILQKSSDTGVSHLSLAMPVQKLMDTYKSFGFGVPTGLGLTGESSG
                     LLPKRRYWSDLDRATFAFGYGLMVTPLQLAHVYATIGSFGIYRPLSITKVDPPVIGTR
                     VMPEELVHEVEHMMESVALPGGGGTKAAVRDYRIAVKTGTAKKIGDDGKYVDKYVAYT
                     AGVAPASNPRFALVVVINNPQNGAYYGGAVSAPVFSQIMGDVLRLENVEPDGMPADSD
                     HLLVMHGSHVAVPGS"
     gene            2666..3475
                     /gene="rlmA"
                     /locus_tag="OQP62_004126"
     CDS             2666..3475
                     /gene="rlmA"
                     /locus_tag="OQP62_004126"
                     /EC_number="2.1.1.187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (guanine(745)-N(1))-methyltransferase"
                     /protein_id="HCS1723524.1"
                     /translation="MSFTCPLCHQPLTQINSSVICPQRHQFDVAKEGYINLLPVQHKR
                     SRDPGDSAEMMQARRAFLDAGHYQPLRDAVINLLRERLDQSATAILDIGCGEGYYTHA
                     FAEALPGVTTFGLDVAKTAIKAAAKRYSQVKFCVASSHRLPFADASMDAVIRIYAPCK
                     AQELARVVKPGGWVVTATPGPHHLMELKGLIYDEVRLHAPYTEQLDGFTLQQSTRLAY
                     HMQLTAEAAVALLQMTPFAWRARPDVWEQLAASAGLSCQTDFNLHLWQRNR"
     gene            complement(3472..4038)
                     /gene="mntP"
                     /locus_tag="OQP62_004127"
     CDS             complement(3472..4038)
                     /gene="mntP"
                     /locus_tag="OQP62_004127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP"
                     /protein_id="HCS1723525.1"
                     /translation="MHFTATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFG
                     AVETLTPLIGWGLGILASKFVLEWNHWIAFVLLIFLGGRMIIEGIRGGSDEDETPLRR
                     HSFWLLVTTAIATSLDAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMIGRFIGP
                     MLGKRAEILGGVVLIGIGVQILWTHFHG"
BASE COUNT         1089 a         1059 c         1151 g         1073 t
ORIGIN      
        1 aaatacagct tttaaatgtg atttgatgca ctggaagaag cgaaattatt gagctatggt
       61 agaaaaatgg cttttcagca gtgacgttgt caggagtccg tcagcgcgtg aggatatatc
      121 tttcgcaatt ttgttgcata aacgtgttgt caatttgtga aggttctcgt aatttgtgcg
      181 acggatcgag acacgtttaa aaatggcttg ccataattaa cgttatatgt gataacaggc
      241 tttgggttaa acgaggtaca gttctgttta tgtgtggcat tttcagtaaa gaagtcctga
      301 gtaaacacgt tgacgttgaa taccgcttct ctgccgaacc ttatattagt gcctcaagca
      361 gtaatgtctc agttttatct atgttatgcc tacgggcaaa gaaaacactc taaggaattt
      421 tgcaaatggc aaagattaaa ggtcaagtta agtggttcaa cgaatccaaa ggttttggct
      481 tcattactcc ggctgacggc agcaaagatg tgttcgtaca cttctccgct atccagggca
      541 atggtttcaa aactctggct gaaggccaga acgttgagtt cgaaattcag gacggccaga
      601 aaggtccggc tgctgttaac gtaacagcta tctgatcgac accactgatt tgatgcgttt
      661 gtcgcgtcag cctcagatat aaagcctcgc taaaagcggg gctttttaat tcaatatcct
      721 tcaaaatgtg tctggatgcg ctctcgttag cgatttgttg caaaggcgcg atgttattag
      781 cattgttttt tctggttttt ccggccgttt cccgttaaat caatcacctg aaaaatgatt
      841 cggctggaga tcaggtgaaa aagaaaagcg acggcgatac ccgtaatttt acacccatac
      901 gttttgcact actttgcact gccattctgc tcagtatggc attgttgtta gggcgggtgg
      961 catggctgca aattgttacg ccgtcgaaac tggtgaaaca agaagatatg cgctcgcttc
     1021 gtgaagtgac cacggcctct ccacgcggca tgatcaccga cagagaaggg cggcccttag
     1081 cggtgagcgt tccggttaat gctgtctggg ccgatccgaa aactatcata agcaaaggcg
     1141 gcgttggcta caatgagcgc tggcaggcgc tggccagcgc cttacatctg tctctcagta
     1201 cgcttgcgga acgggtaaac agtaacccgg caggtcgttt tatctacctc gcgcgccagg
     1261 tttcacccca gcaagccgaa tggatagata aactgaatct accgggtatt aacctgcggg
     1321 aagagtcgcg ccgtttttac cctgccggac atgtagcggc caatttgatc ggctttacca
     1381 atatcgacgg gcagggaata gaaggtattg aaaagagctt taacgcgcaa ctgacgggaa
     1441 aaccgggctc ccggctggtg cgtaaagata aatttggtca cgttattgag aacattacgg
     1501 aagtgaatcc ggttcctgct catgaacttc agcttagcat tgatgaacgt ctgcaaacgg
     1561 ttaccgaaga tgcgctggat aacgccgtca tctggaacaa agcggaatcc ggcgctgccg
     1621 tattgattaa catcccaacg ggtgaaattc tctcgatggc gagctacccg gatttcaacc
     1681 cgaacaaccg tgaaggcgcg cagttggacg attttcgtaa ccgcgcgatt agcgacactt
     1741 tcgaacccgg ttctactgtg aagccattgg tcattatgac tgcgttacag cagggtatcg
     1801 tgcaaccgga cagcgttatc gatacccatc cttttactct cgatggacac cgtatccgcg
     1861 acgtcggcta ctatccggaa ctgacattaa ccggcatttt gcaaaaatcc agcgataccg
     1921 gcgtttctca cctttctctg gcgatgccgg tgcagaaatt aatggatact tataaaagct
     1981 ttggtttcgg cgtgcctacc ggactgggtc tcaccggaga gagcagcggg ttattaccga
     2041 aacgccgtta ctggagtgat ttagatcgcg ctaccttcgc ttttggctat ggattaatgg
     2101 tgacgccgct gcaactggcg catgtttatg ccacgattgg cagctttggt atctaccgtc
     2161 cgttatcgat caccaaagtt gatccgcccg tgatcggcac gcgagtaatg ccggaagaac
     2221 tggtgcacga ggtggaacat atgatggaga gcgtcgcgtt gcctggcggc ggcggaacaa
     2281 aagccgcagt aagagactac cgtattgcgg tcaaaaccgg gacggcgaaa aaaattggcg
     2341 atgatggtaa atacgttgat aagtatgtgg catataccgc aggcgtcgcg ccggcaagta
     2401 accccagatt tgcgctggtg gtggtgatta ataatccaca aaatggggct tattatggcg
     2461 gtgcggtatc tgcgcccgta ttcagccaga tcatgggcga tgtactgcgg ctggaaaatg
     2521 ttgagccaga cggtatgcca gccgattcag atcaccttct ggtgatgcat ggcagccacg
     2581 ttgcggttcc gggctcgtaa aggattttcc cggggcgcaa ttcgcgttac acttgcgccc
     2641 tttagcgccc cagtccggag ttgtcatgtc gtttacctgt ccgctttgcc atcaaccgct
     2701 tacgcagatt aatagcagcg ttatatgtcc acagcgccat cagtttgatg tggcgaaaga
     2761 gggctacatc aatctgctgc cggtacagca taaacgttcg cgcgatccgg gcgacagcgc
     2821 cgaaatgatg caggcgagga gagcgtttct tgatgcaggc cattatcagc cgctgcgcga
     2881 tgcggtgatt aacctgttgc gcgagcggct ggatcagtcg gccacggcga ttctggatat
     2941 tggctgcggc gaggggtatt acactcatgc ttttgccgag gcgttgccgg gagttaccac
     3001 gtttggactg gacgttgcta aaacggcgat caaagcggcg gcgaagcgct attcgcaggt
     3061 gaagttttgt gtggcgtcaa gccatcgact gccctttgcc gatgcgtcaa tggatgcggt
     3121 gatcagaatc tacgctccgt gtaaggcgca ggaattggcg cgtgtggtga aacctggtgg
     3181 ttgggtcgtt accgccacgc cggggccgca tcatctgatg gaactaaaag ggctcattta
     3241 tgatgaggtg cgtttacatg cgccgtatac cgagcagctc gacggattca cattgcagca
     3301 gagtacccgc cttgcttatc acatgcagct caccgccgaa gcggctgtag cactgttgca
     3361 aatgacgcca tttgcctggc gcgccagacc agacgtgtgg gaacaactgg ctgccagcgc
     3421 cggacttagc tgccagacgg atttcaacct tcatctctgg cagcgtaacc gttaaccgtg
     3481 aaaatgcgtc cagaggatct ggacgccaat tcctatcagt acgaccccgc cgagaatttc
     3541 agcacgctta cccagcattg ggccgataaa gcgaccgatc atcattccga gggtggacat
     3601 gataagcgtg gcgcaaccga tagctaatgc ggttgcgatg atgtttacct gcaaaaacgc
     3661 cagaccgacg ccaaccgcca tcgcatcgag gctggtcgcg atagccgtcg tgactaatag
     3721 ccaaaagctg tgacgacgta acggtgtttc atcttcatca ctaccgccgc ggataccttc
     3781 gatgatcatg cgtccgccca gaaagatcag cagaacaaag gctatccagt ggttccattc
     3841 cagaacgaat ttactcgcca atatccccag cccccagccg atcaacgggg ttagcgtttc
     3901 aaccgcgcca aagataagac cggtacgcaa cgcttctgag aatttgggtt tatgtagggt
     3961 ggcgcctttg ccaattgatg ccgcgaaagc atccatcgac atgccgaaag cgagaagaac
     4021 agtagcagta aagtgcatga cagcgtcctg accggggtat ccattaaaca catcactgcc
     4081 cccagcaaac atgcatgtcg ccattctgtg acgaaataca cagcagttga tgcgcctatg
     4141 gtctcgcctg accagcggcg gctggtccgt acgcgccacg ttttgcaacg agtatgttga
     4201 cacgtacatt tccggagtct ggaaatcggc tactccctaa ttgacggcgc aacattaaca
     4261 tatttttaga atataaaaca acagcgataa aatattattt gccttctaat tgaaaacgat
     4321 tttcatttag atttattcat caataaaacg ttaaattaaa taacaattgg tc
//
LOCUS       DAJVSD010000301         4354 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.301, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000301 DAJVSD010000000
VERSION     DAJVSD010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4354
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.301"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(134..586)
                     /locus_tag="OQP62_004128"
     CDS             complement(134..586)
                     /locus_tag="OQP62_004128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector protein OrgC"
                     /protein_id="HCS1723526.1"
                     /translation="MIPGTIPTSYLVPTADTEVTGVVSLSARAAMLNNVDSAPLSNGG
                     DVDLYDAFYQRLLALPESASSETLKDSIYQEMNAFKDPKSGDSAFVSFEQQTAMLQNM
                     LAKVEPGTHLYEALNGVLVGTMNAQSQMTSWMQEIILSGGENKEAIDW"
     gene            complement(602..1273)
                     /gene="orgB"
                     /locus_tag="OQP62_004129"
     CDS             complement(602..1273)
                     /gene="orgB"
                     /locus_tag="OQP62_004129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010835247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system linker protein OrgB"
                     /protein_id="HCS1723527.1"
                     /translation="MLKNIPIPSPLSPVEGILIKRKTLERYFSIERLEQQAHQRAKRI
                     LREAEEEAKTLRMYAYQEGYEQGMIDALQQVAAYLTDNQTMAWKWMEKIQIYARELFS
                     AAVDHPETLLTVLDEWLRDFDKPEGQLFLTLPVNAKKEHQKLMVLLMENWPGTFNLKY
                     HQEQRFIMSCGDQIAEFSPEQFVETAVGVIKHHLDELPQDCRTISDNAINALIDEWKT
                     KTQAL"
     gene            complement(1230..1829)
                     /gene="orgA"
                     /locus_tag="OQP62_004130"
     CDS             complement(1230..1829)
                     /gene="orgA"
                     /locus_tag="OQP62_004130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-regulated invasion protein OrgA"
                     /protein_id="HCS1723528.1"
                     /translation="MIRRNRQMNRQPLPIIWQRIIFDPLSYIHPQRLQIAPEMIVRPA
                     ARAAANELILATWRLKNGEKECIQNSLTQLWLRQWRRLPQVAYLLGCHKLRADLARQG
                     ALLGLPDWAQAFLAMHQGTSLSVCNKAPNHRFLLSVGYAQLNALNEFLPESLAQRFPL
                     LFPPFIEEALKQDAVEMSILLLALQYAQKYPNSVPAFAC"
     gene            complement(1801..2559)
                     /gene="prgK"
                     /locus_tag="OQP62_004131"
     CDS             complement(1801..2559)
                     /gene="prgK"
                     /locus_tag="OQP62_004131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system inner membrane ring
                     lipoprotein PrgK"
                     /protein_id="HCS1723529.1"
                     /translation="MIRRYLYTFLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNI
                     EANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPRVEIAQMFPADSLVSSPRAEK
                     ARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDAGENGRPPKPVHLSALAVYERGSPL
                     AHQISDIKRFLKNSFADVDYDNISVVLSERSDAQLQAPGTPVKRNSFATSWIVLIILL
                     SVMSAGSGVWYYKNHYARNKKGITADDKAKSSNE"
     gene            complement(2556..2861)
                     /gene="prgJ"
                     /locus_tag="OQP62_004132"
     CDS             complement(2556..2861)
                     /gene="prgJ"
                     /locus_tag="OQP62_004132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system inner rod protein
                     PrgJ"
                     /protein_id="HCS1723530.1"
                     /translation="MSIATIVPENAVIGQAVNIRPMETDIVSLDDRLLQAFSGSAIAT
                     AVDKQTITNRIEDPNLVTDPNELAISQEMISDYNLYVSMVSTLTRKGVGAVETLLRS"
     gene            complement(2880..3122)
                     /gene="prgI"
                     /locus_tag="OQP62_004133"
     CDS             complement(2880..3122)
                     /gene="prgI"
                     /locus_tag="OQP62_004133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system needle filament
                     protein PrgI"
                     /protein_id="HCS1723531.1"
                     /translation="MPTSWSGYLDEVSAKFDKGVDNLQTQVTEALDKLAAKPSDPALL
                     AAYQSKLSEYNLYRNAQSNTVKVFKDIDAAIIQNFR"
     gene            complement(3147..4325)
                     /gene="prgH"
                     /locus_tag="OQP62_004134"
     CDS             complement(3147..4325)
                     /gene="prgH"
                     /locus_tag="OQP62_004134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system inner membrane ring
                     protein PrgH"
                     /protein_id="HCS1723532.1"
                     /translation="METSKEKTITSPGPYIVRLLNSSLNGCEFPLLTGRTLFVVGQSD
                     ALTASGQLPDIPADSFFIPLDHGGVNFEIQVDTDATEIILHELKEGNPESRSVQLNTP
                     IQVGELLILIRPESEPWVPEQPEKLETSAKKNEPRFKNGIVAALAGFFILGIGTVGTL
                     WILNSPQRQAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQVLARGDYDK
                     NARVINENEENKRISTWLDTYYPQLAYYRLHFDEPRKPVFWLSRQRNTMSKKELEVLS
                     QKLRALMPYADSVNITLMDDVTAAGQAEAGLKQQALPYSRRNHKGGVTFVIQGALDDV
                     EILRARQFVDSYYRTWGGRYVQFAIELKDDWLKGRSFQYGAEGYIKMSPGHWYFPSPL
                     "
BASE COUNT         1127 a         1115 c          912 g         1200 t
ORIGIN      
        1 gaataaaacg cctggcagat accttaataa tccatataca tcaataagat agatacactg
       61 gcatggtgca ttttctgcat tatttgctga tatatacacc ataccttatc acaaatcgcc
      121 agcaatgggg ggttcaccag tcaattgcct ctttgttttc cccgcccgat aaaataatct
      181 cctgcatcca ggaggtcatt tgtgactgtg cattcattgt accaactaat accccgttta
      241 aagcctcata taaatgggtg cccggttcaa cttttgctaa catgttttgt agcatagccg
      301 tttgctgctc aaaagaaaca aaagccgaat caccactttt aggatctttg aaggcattca
      361 tctcttgata aatgctatct ttaagcgttt cagaagaggc tgactcagga agcgccaaaa
      421 gtcgttggta gaatgcatca taaagatcaa cgtcgccgcc attgcttaaa ggcgcgctat
      481 ccacattatt cagcatagcg gccctggcac tcaacgaaac cacacccgtc acttcagtat
      541 ccgctgtcgg gaccaaataa gaagtcggaa tcgtacccgg tatcacctta taacctccat
      601 tttacaatgc ttgcgttttt gtcttccatt catcaataag tgcgttaatg gcgttatcag
      661 aaatcgtccg gcagtcttgt ggaagttcat caagatgatg cttaatgacg cctactgctg
      721 tttcaacaaa ttgttcaggt gaaaattctg cgatctgatc gccgcaactc atgataaagc
      781 gctgttcctg atgatattta agattaaaag tgccaggcca gttctccata agcaacacca
      841 tcagtttttg gtgttctttt ttcgcattaa ctggcagtgt taaaaaaagt tgcccctccg
      901 gcttatcgaa atcccttagc cactcatcca ggacggttaa aagcgtttcg ggatggtcga
      961 ccgctgctga aaataactcg cgggcataaa tctgtatttt ttccatccac ttccaggcca
     1021 ttgtctgatt atcagtaaga taagcggcga cctgctgtaa cgcgtctatc attccctgct
     1081 cgtaaccttc ctgataggcg tacatccgca aggtctttgc ctcttcttcc gcctctcgca
     1141 aaatacgctt agcccgttgg tgcgcctgct gttctaatct ttcaatagag aaataacgtt
     1201 ccagcgtttt acgctttatc agtatcccct caacaggcga aagcggggac ggaattggga
     1261 tatttttgag catattgtaa ggccagtagc aaaattgaca tttctacagc atcctgcttc
     1321 aatgcctcct caataaatgg aggaaaaagc aaaggaaaac gctgtgctaa agattcaggt
     1381 aaaaattcat tcagggcatt taactgtgca tacccgacgc taagtaaaaa cctgtgattc
     1441 ggcgccttat tgcaaacgga taaacttgtt ccctgatgca ttgccaaaaa tgcttgcgcc
     1501 caatccggca ggccaagcaa ggctccctgc cttgccagat cggctctcag tttatggcaa
     1561 ccgagtaaat acgctacttg cggcagtcgg cgccactgac gcagccacag ctgcgtcagt
     1621 gagttttgaa tacactcctt ttctccgttc ttaagccgcc atgtcgccag tattaactca
     1681 tttgccgccg ccctggcggc gggtctgaca atcatttccg gcgctatctg caaccgctga
     1741 ggatggatat acgataacgg atcaaaaatg attctttgcc agataatggg taatggctgc
     1801 ctattcattt gacgatttcg ccttatcatc agccgttatg cctttcttat tgcgggcata
     1861 atggtttttg taataccaga cgccagagcc tgctgacatc acggataaca aaataatcaa
     1921 cacaatccaa ctggttgcaa aagaattacg ttttactggt gtgccgggag cctgtaattg
     1981 ggcatcagaa cgttctgaca acacaacaga aatgttgtca taatccacat cggcaaaact
     2041 attctttaag aaacgcttga tatcgctgat ctgatgcgca agcggcgaac ctcgttcata
     2101 tacggctaat gccgacagat gaacaggttt tggcggacgg ccattttcac cagcatcaat
     2161 atcataacta atatggaccc tggcggagag cacgccctcc atcgtctgta atgactgttc
     2221 cagtcgctgt tcaatagccg aatataacct ggccttttca gctcgcggag acgataccag
     2281 cgaatccgcc gggaacatct gcgctatttc cacccgtggc cggggaggaa gctgataagt
     2341 tttaatccag tacaccgcag cggtaaaatc aggctcagca acggtaatgc tatagcccaa
     2401 ttttccgcta tcaattttat tcgcctctat attgtgcatt tgcagaacgg caatgacctc
     2461 attagcctgt tcctggtcca gtccttttaa aagatcctta tccttacagc cggcaagggt
     2521 cattaccagc agaaaggtat atagatatcg acgaatcatg agcgtaatag cgtttcaaca
     2581 gccccgactc ctttacgagt aagggtactt accatagaaa catacaggtt ataatctgaa
     2641 atcatctctt gcgaaatagc cagctcatta ggatccgtca ccagattagg gtcctcaatc
     2701 ctgttggtaa tcgtctgttt atccacagcc gtggcaatcg ccgaaccaga aaaagcctgg
     2761 agtagccggt catccagcga gacaatgtcc gtttccatag gcctgatatt gaccgcctgc
     2821 cctataacgg cattctcagg gacaatagtt gcaatcgaca taatccacct tataactgat
     2881 taacggaagt tctgaataat ggcagcatca atatccttaa agacttttac cgtgttcgat
     2941 tgcgcgttac ggtacaagtt atattccgag agcttactct gatacgccgc cagtagcgcc
     3001 ggatcggagg gttttgctgc taatttatcc agcgcctctg ttacctgcgt ttgtagatta
     3061 tcaacgccct tatcaaattt tgctgaaact tcatccagat agcctgacca agatgttggc
     3121 ataatgactt ccttatttgc gttaaattaa agtgggcttg ggaaatacca atggcctggg
     3181 ctcattttga tataaccttc cgccccgtac tgaaatgagc gccccttgag ccagtcatct
     3241 tttaattcga tcgcaaactg cacatagcgt cctccccatg tgcggtaata gctatcgaca
     3301 aattgacggg ctctgagtat ttctacatca tcgagcgccc cctgaataac aaacgttacg
     3361 ccccccttat gattcctgcg ggaataaggt aacgcctgct gttttagccc cgcttccgcc
     3421 tggcctgcgg cggtaacatc gtccatcaat gtgatgttaa ccgaatccgc gtaaggcatt
     3481 agcgctctca gcttttgact taacacctcg agctctttct tgctcatcgt gtttcgctgg
     3541 cggcttagcc agaaaacggg tttacgcggc tcatcgaaat gaagccgata ataagccagc
     3601 tgcggataat aggtatccag ccaggtagag atacgcttat tttcttcgtt ttcgttaatc
     3661 actcgcgcat ttttatcata atcgcccctc gctaaaacct gacgagccca cagcgtatct
     3721 ctttcatttt gcgcagcgac atagagcatt ttgtcccgtc ctggcaacac ctgaaagcgc
     3781 tccttctcct gccccaataa cgaatcgagc tctgcggcct gccgctgcgg cgagttaagt
     3841 atccataacg tccccaccgt cccaattccc aatataaaaa acccggccag tgctgctaca
     3901 attccgtttt taaaacgcgg ctcgttcttt tttgcagacg tttctaactt ctcaggctgc
     3961 tcgggcaccc acggctcgct ttccgggcga atcaggataa gcaattcacc gacctgtatt
     4021 ggcgtattta attgcaccga acgagattca ggatttcctt ctttcagctc atggagtata
     4081 atttcggtcg catccgtatc cacctggatt tcaaaattta ctccgccatg gtccagcggg
     4141 ataaaaaagc tatcggcagg tatatcaggg agttggcctg aagcagtgag cgcatcactc
     4201 tgacctacca caaagagtgt tcggcctgtc agcaatggaa actcacagcc gttcagtgag
     4261 ctgttaagta atcgaactat gtatggccct gggcttgtta tcgtcttctc ttttgatgtt
     4321 tccatatata ctgttagcga tatctgtcgt tctc
//
LOCUS       DAJVSD010000302         4330 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.302, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000302 DAJVSD010000000
VERSION     DAJVSD010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4330
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.302"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            5..1096
                     /locus_tag="OQP62_004135"
     CDS             5..1096
                     /locus_tag="OQP62_004135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="linear amide C-N hydrolase"
                     /protein_id="HCS1723533.1"
                     /translation="MMKKSKAMLFIAPALFSYAMAAQACTTLAIQDKQGDIFHGRTLE
                     YMQDLPSWLTYYPAGTQFDKKTPDGSQGISYQAKYPILAITSTITDGDSRDILEGMNS
                     AGLSFSENMIMNAQLPPLPASEYKQAIPVTSLGEWALARFATVGEVKQAIKEGKFWSP
                     ELHRFGDLKSPFHYAFYDKKGGSIVVEVENGKFHVYDNPTRVMTNGPAFPWHLTNLNN
                     YTQLTNVDRSSGTLGGIKVMQPDSGIAIADLPSSDTSVSRFIRGVYYTTYAPQATSAH
                     DAMNTLAHIMSRFDRPKNITVDYMGSEGEGNATRKPVSEYTVWTTLSDLTHGEMMVRG
                     YNDINYKTWSLSQFKNATAPVFEKINVKG"
     gene            1142..1933
                     /locus_tag="OQP62_004136"
     CDS             1142..1933
                     /locus_tag="OQP62_004136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HCS1723534.1"
                     /translation="METTGGCFSLSCTVINYHDHQRQDGMLNPFKIPWIWIGGRMVIP
                     EVRQERLYQKIANLIIKLINDNIFPPGTFLPPERELAKQLGVSRASLREALIVLEISG
                     WIVIQSGNGVIVSDKKHLASDYTIEEILSTRELVDSHCARLAAQNDNVDVINQIEAIY
                     HRMDQAINDNNVHGFYSLDKEFHLAISEASRNRVLFDMSRMLWEQRINIPYAGLDEQS
                     GDRNVLLNLNKQHKAIVDAMRQSDADSAYEGSLEHLRYVRKIVGG"
     gene            complement(1992..3017)
                     /locus_tag="OQP62_004137"
     CDS             complement(1992..3017)
                     /locus_tag="OQP62_004137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HCS1723535.1"
                     /translation="MKVKAVFINKPGEVETRWVDYPHKKENEVLIKVDAAGICGSDIG
                     AFRGTNPLVTYPRIIGHEVTGIVLQEGTGMPDNIKKGDRVIVDPYIYCGHCYPCSVGR
                     TNCCENLNVIGVHIDGAMQEVVTHPAHLIHKIPDNVPSEMAPLAEPLTIALHALHRAN
                     VKAGEYVAIIGAGAIGLMAALSARHYKATPILIDIVEERLRYAQKLGVPYVLNAADDQ
                     VIDAIKNITHGTMAQVVIEASGANSAIRNTLDLASFAGRISFTGWPKQETSLPTNLIT
                     YKELDLRGSRTSAGEFDEALRMLSTLEINPQDVVSKVVNLDEIPDAVKELDRYPERYL
                     KINAVFH"
     gene            complement(2992..4278)
                     /locus_tag="OQP62_004138"
     CDS             complement(2992..4278)
                     /locus_tag="OQP62_004138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1723536.1"
                     /translation="MKRKTMGWLIVFLLFIVYMLNYMDRSALSITAPLIEKELGFNAA
                     EMGMIFSAFFIGYALFNFIDGWASDKVGPKTVFLIAALLWSVFCGLTGLVTGLWTMLI
                     VRVLFGMAEGPVSAAGNKIINNWISRKESATAIGIFSAGSPLGGAVSGPIVGLLALSL
                     GWRPAFGIIFLFGLVWVLLWYFIVSDKPTMSKRLAPEERIDFENHEDVILSDDGRATP
                     SLGYYMKQPMVWATTLAFFSYNYILFFFLTWFPSYLNHSLHLDIKEISIATVIPWVIG
                     AIGMVLGGVCSDVIYRITGNALLSRRLILGVCLAGAAVCVAVSGTVSTIGSAITLMSV
                     SLFLLYLTGPIYWAVIQDVVHKDKVGSVGGAMHGLANISGIIGPLVTGFIVQFSGKYD
                     YAFYLAGAIAIVSSLLVFVFVKSKGFKANESQSCVH"
BASE COUNT         1226 a         1038 c         1004 g         1062 t
ORIGIN      
        1 gagcatgatg aaaaaaagta aagcaatgtt atttatcgct ccggcgctgt tttcatacgc
       61 catggctgca caggcctgca caacccttgc tattcaggat aaacaaggcg atatttttca
      121 tgggcgtacg ctggaatata tgcaggattt accctcatgg ttaacgtatt atccggcggg
      181 aacgcagttt gataaaaaaa cgccggatgg cagccagggg ataagctatc aggcgaagta
      241 tccgatactg gccattactt ccaccattac tgatggcgat agcagagaca tacttgaagg
      301 catgaatagc gcgggattgt catttagtga aaacatgatc atgaatgcgc agttgccgcc
      361 attgcccgcg agtgaatata aacaggcaat tcctgtcacc tcgttgggag aatgggcgct
      421 ggcccgtttt gctactgtcg gcgaggtaaa acaggcaata aaagagggca aattctggtc
      481 accggaactg catcggtttg gcgatctgaa atcgccattt cattacgcgt tttacgacaa
      541 gaaaggagga agcattgtcg ttgaagtgga aaatggcaaa ttccatgtct atgacaatcc
      601 cactcgcgtg atgacaaatg gtcccgcatt cccctggcat ctgacaaatc tgaataatta
      661 tacgcaatta accaatgtgg accgctcttc aggcacattg ggcgggataa aagtgatgca
      721 gcctgatagc gggattgcta ttgcagactt gccatcgtcc gatacgtcgg tttcccgttt
      781 tatacgcggc gtttattaca ctacatatgc gccgcaagcg acatccgccc acgacgcaat
      841 gaatacgctt gcacatatta tgagccgttt tgatcgtccg aaaaatatta cggttgatta
      901 tatggggagt gaaggggaag gcaacgccac ccgcaaaccg gtctcagaat atacggtctg
      961 gacaacgctg tctgacttga cgcacggtga gatgatggtg cgcggctaca atgatatcaa
     1021 ctataaaacc tggtcccttt ctcagtttaa gaacgcgact gcgcccgtgt tcgagaaaat
     1081 caacgtcaaa ggataaaccg ctcgtctctg tttagtttcc ccggtagtct cggcgaaggt
     1141 aatggagact accggcggtt gcttctcttt atcatgcacg gtaattaatt atcacgatca
     1201 ccagcgccag gatggtatgc taaatccatt caaaatcccc tggatatgga ttggagggcg
     1261 catggttata cctgaggtca ggcaggagag gctctatcag aagatagcca acctcatcat
     1321 taagctgatc aatgataata tttttccacc gggaactttt ttaccgccag aacgcgaact
     1381 ggcaaaacag cttggcgtga gccgcgcctc cttgcgagaa gcccttattg tactggagat
     1441 ctccggatgg atcgtgattc agtccggtaa tggggttatc gtttcagata aaaaacacct
     1501 tgccagtgac tataccatcg aagaaattct ctctactcgc gagctggtcg atagccattg
     1561 tgcgcgctta gccgcacaaa acgataacgt tgacgtcatc aaccaaatag aggcgattta
     1621 tcatcgtatg gatcaagcca ttaacgataa taacgtccac ggcttttact cgctggataa
     1681 agagtttcac cttgcgatct ctgaggccag ccgtaaccgg gtgttgtttg atatgtcccg
     1741 tatgttatgg gaacaacgga ttaatatccc ttacgccggg cttgatgaac agtctggaga
     1801 cagaaatgtt ttacttaatc tcaacaaaca acataaagcg atagtggatg cgatgcgcca
     1861 gtctgatgct gacagcgctt atgagggatc gctggaacat ttacgctatg tgagaaagat
     1921 tgtcggcggc taagtttgtc ggtaaataac accgcatggc ggatatgcca tgcggtagaa
     1981 ctcgccgtaa atcaatggaa aacagcatta atctttaagt aacgctccgg atagcgatca
     2041 agttctttaa ctgcatcagg gatctcatca agattgacga ccttactgac aacatcttgc
     2101 ggattaatct ccagcgttga cagcatgcgt aatgcctcat caaattcacc ggcactggtg
     2161 cgggagccgc gtaaatccag ttctttgtag gtgatcaggt tcgtcggcag cgacgtttcc
     2221 tgttttggcc atccggtaaa cgaaatacga ccagcaaacg atgctaaatc aagcgtattt
     2281 cgaatagcgc tatttgcgcc ggaggcttct atcacgacct gcgccatggt gccgtgggtg
     2341 atatttttaa tagcgtcgat aacctgatcg tcagcggcgt tcagtacata aggaacgcca
     2401 agcttttgcg catagcgtag cctttcttcc acaatatcga tcagaatagg cgttgccttg
     2461 taatgacgcg cgcttaatgc cgccataaga ccaatggccc ccgcgccgat gatggcaaca
     2521 tattccccgg ccttaacgtt tgcccgatgc agcgcgtgta gagcgatggt cagcggttct
     2581 gccagcggcg ccatttcaga aggcacatta tctggtattt tatgaattaa atgtgcggga
     2641 tgagtaacca cctcctgcat tgcgccatcg atatgcacgc caatgacatt taaattttca
     2701 caacaattag ttctgccgac agagcaaggg tagcagtgac cacaataaat ataggggtca
     2761 acaatcacgc ggtcgccttt tttaatattg tccggcattc cggtgccttc ctgaagaaca
     2821 attccggtca cttcatgccc aataattctt gggtaagtaa caagtgggtt cgttccacga
     2881 aaagccccga tatccgatcc gcaaatgcct gcggcatcaa ccttaattaa tacttcattt
     2941 tctttcttat ggggataatc cacccagcgg gtttcaactt caccaggctt attaatgaac
     3001 acagctttga ctttcattgg ctttgaatcc tttacttttt acaaacacga agaccaacag
     3061 gcttgaaacg atagcgatag caccagccag atagaacgca tagtcatatt taccgctaaa
     3121 ttgaacgata aaaccggtga caagcggacc gataataccg gatatattag ccaggccatg
     3181 catggctccg ccgacgctcc ctaccttatc tttatgaaca acatcctgaa taaccgccca
     3241 ataaattggg cctgttaaat agagcaggaa gagtgaaact gacatgagcg taattgcgct
     3301 accaatagtg ctaacggtac cggaaacggc aacacatacc gccgcgcctg ccagacatac
     3361 gcccagaata agtcgacgtg agagcagggc attaccggta atccgataaa ttacatcaga
     3421 acagacgccg ccgagcacca taccaatggc gccgatgacc cagggaatta ccgtggcgat
     3481 actaatttct ttaatatcga gatgtaacga atggttcaga taacttggga accaggtcag
     3541 gaagaaaaaa agaatatagt tgtagctgaa aaaagccaga gttgtcgccc ataccattgg
     3601 ttgtttcatg taatagccga gtgaaggcgt agcccggcca tcatcagata aaataacgtc
     3661 ctcatgattt tcaaaatcaa tgcgttcttc cggcgccagg cgtttactca ttgttggctt
     3721 atcgctaacg ataaagtacc acagtagtac ccagaccaag ccaaataaga aaataatgcc
     3781 aaatgcgggg cgccagccta aggataacgc caacaggccc acaatcggcc cggacaccgc
     3841 gccgccgagc ggggaaccgg cgctaaaaat tccgatcgcc gtggcagact cctttcggga
     3901 aatccagtta ttgatgattt tatttccggc agcgctgacc ggtccttcag ccataccgaa
     3961 aagaacgcgc acgataagca ttgtccacaa tccggtgact aaaccagtta agccacaaaa
     4021 tacagaccat agtaacgctg cgatgagaaa aaccgttttt ggcccaactt tatcgctggc
     4081 ccagccatca ataaaattaa acagggcgta tccgataaaa aatgcgctga agatcattcc
     4141 catctccgcg gcgttaaatc ctaactcctt ttcgatcaag ggggcagtta tcgacaatgc
     4201 tgaacgatcc atatagttga gcatgtaaac tataaataga agaaaaacga taagccatcc
     4261 cattgttttt cttttcatga ttaatcctct tattgtggtc tagcggcctg accacaatat
     4321 tttaaggtta
//
LOCUS       DAJVSD010000303         4316 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.303, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000303 DAJVSD010000000
VERSION     DAJVSD010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4316
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.303"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..226
                     /locus_tag="OQP62_004139"
     CDS             <1..226
                     /locus_tag="OQP62_004139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129736.1"
                     /note="involved in methylation of ribosomal protein L3;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HCS1723537.1"
                     /translation="GLKLTRRILGNAPDYLSDDGVLICEVGNSMVHLMEQYPDVPFTW
                     LEFDNGGDGVFMLTKAQLLAAREHFNIYKD"
     gene            262..1347
                     /gene="aroC"
                     /locus_tag="OQP62_004140"
     CDS             262..1347
                     /gene="aroC"
                     /locus_tag="OQP62_004140"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HCS1723538.1"
                     /translation="MAGNTIGQLFRVTTFGESHGLALGGIVDGVPPGIPLTEADLQHD
                     LDRRRPGTSRYTTQRREPDQVKILSGVFDGVTTGTSIGLLIENTDQRSQDYSAIKDVF
                     RPGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQM
                     GDIPLEIKDWRQVELNPFFCPDADKLDALDELMRALKKEGDSIGAKVTVMASGVPAGL
                     GEPVFDRLDADIAHALMSINAVKGVEIGEGFNVVALRGSQNRDEITAQGFQSNHAGGI
                     LGGISSGQHIVAHMALKPTSSITVPGRTINRMGEEVEMITKGRHDPCVGIRAVPIAEA
                     MLAIVLMDHLLRHRAQNADVKTEIPRW"
     gene            1351..2175
                     /gene="mepA"
                     /locus_tag="OQP62_004141"
     CDS             1351..2175
                     /gene="mepA"
                     /locus_tag="OQP62_004141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-insensitive murein endopeptidase"
                     /protein_id="HCS1723539.1"
                     /translation="MKKTAIALLAWFVSSASLAATPWQKITHPVPGAAQSIGSFANGC
                     IIGADTLPVQSDNYQVMRTDQRRYFGHPDLVMFIQRLSHQAQQRGLGTVLIGDMGMPA
                     GGRFNGGHASHQTGLDVDIFLQLPKTRWSQAQLLRPQALDLVSRDGKHVVPSRWSSDI
                     ASLIKLAAQDNDVTRIFVNPAIKQQLCLDAGSDRDWLRKVRPWFQHRAHMHVRLRCPA
                     DSLECEDQPLPPPGDGCGAELQSWFEPPKPGTTKPEKKTPPPLPPSCQALLDEHVL"
     gene            2175..2984
                     /locus_tag="OQP62_004142"
     CDS             2175..2984
                     /locus_tag="OQP62_004142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HCS1723540.1"
                     /translation="MDNFYDLFMVSPLLLVVLFFVAVLAGFIDSIAGGGGLLTIPALM
                     AAGMSPANALATNKLQACGGSLSSSLYFIRRKVVNLAEQKLNILMTFIGSMSGALLVQ
                     HVQADILRQILPILVIFIGLYFLLMPKLGEEDRQRRLYGLPFALIAGGCVGFYDGFFG
                     PAAGSFYALAFVTLCGYNLAKSTAHAKVLNATSNVGGLLLFIIGGKVIWATGFVMLVG
                     QFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSARLLYDSHGQEILHWLGMN"
     gene            2984..3533
                     /locus_tag="OQP62_004143"
                     /pseudo
     CDS             2984..3533
                     /locus_tag="OQP62_004143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461323.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P hydroxylase"
     gene            3566..3841
                     /locus_tag="OQP62_004144"
     CDS             3566..3841
                     /locus_tag="OQP62_004144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcL family protein"
                     /protein_id="HCS1723541.1"
                     /translation="MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELES
                     GDDHSVEAVYANVSQSLEKAIGAGELSPRDQALVKAMWDNLFDKAKQ"
     gene            complement(3893..>4316)
                     /gene="mnmC"
                     /locus_tag="OQP62_004145"
     CDS             complement(3893..>4316)
                     /gene="mnmC"
                     /locus_tag="OQP62_004145"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HCS1723542.1"
                     /translation="STVWREEDQRQNRQRLLDCFPDANWAIEVDVSGNSARCGVRCAT
                     RDHLPMVGNVPDYHATLTHYADLADNKTSAASAPVYPGLFMLGALGSRGLCSAPLCAE
                     ILAAQMSNEPIPLDAGTLAALNPNRLWVRKLLKGKAVK"
BASE COUNT          937 a         1162 c         1266 g          951 t
ORIGIN      
        1 cggcctcaaa ttgacccgcc gtatcctggg aaatgcgccg gattatctgt ccgatgatgg
       61 cgttctgatt tgtgaagtcg gaaacagcat ggtacatctg atggagcagt atccggatgt
      121 gccgttcacc tggctggagt ttgacaacgg cggcgatggc gtctttatgt tgaccaaagc
      181 gcagttgctc gcggcccgtg aacatttcaa tatttataaa gattaaaaca cgcaaacgac
      241 aacaacgata acggagccgt gatggcagga aacacaattg gacaactctt tcgcgtaacc
      301 actttcggcg aatcacacgg gctggcgctt gggggtatcg tcgatggcgt gccgcccggc
      361 atcccgttga cggaggccga tctgcagcac gatctcgaca gacgccgccc tggcacctcg
      421 cgctatacta ctcagcgccg cgaaccggac caggtaaaaa ttctctccgg cgtgtttgat
      481 ggcgtgacga ccggcaccag tattggcctg ctgattgaaa acaccgatca gcgctcgcag
      541 gactacagcg cgattaaaga tgtttttcgc ccgggacacg cggattacac ctatgagcag
      601 aaatacggcc tgcgcgatta ccgcggcggt ggacgttctt ccgcgcgtga aaccgcgatg
      661 cgcgtagcgg caggggcgat cgccaagaaa tacttggcgg aaaagttcgg catcgaaatc
      721 cgcggctgcc tgacccagat gggcgacatt ccgctggaga ttaaagactg gcgtcaggtt
      781 gagcttaatc cgttcttttg ccccgatgcg gacaaacttg acgcgctgga cgaactgatg
      841 cgcgcgctga aaaaagaggg tgactccatc ggcgcgaaag tgacggtgat ggcgagcggc
      901 gtgccggcag ggcttggcga accggtattt gaccgactgg atgcggacat cgcccatgcg
      961 ctgatgagca tcaatgcggt gaaaggcgtg gagatcggcg aaggatttaa cgtggtggcg
     1021 ctgcgcggca gccagaatcg cgatgaaatc acggcgcagg gttttcagag caaccacgct
     1081 ggcggcatcc tcggtggcat cagtagtggg caacacattg tggcgcatat ggcgctgaaa
     1141 cctacctcca gcattaccgt gccgggacgt acgatcaacc ggatgggtga agaggtcgag
     1201 atgatcacca aagggcgcca cgatccgtgt gtggggattc gcgcagtgcc gatcgcagaa
     1261 gccatgctgg cgatcgtact gatggatcac ctgctgcgcc atcgggcaca gaatgcggat
     1321 gtaaagacag agattccacg ctggtaagaa atgaaaaaaa ccgcgattgc gctgctggca
     1381 tggtttgtca gtagcgccag cctggcggcg acgccgtggc agaaaataac ccatcctgtc
     1441 cccggcgccg cccagtctat cggtagcttt gccaacggat gcatcattgg cgccgacacg
     1501 ttgccggtac agtccgataa ttatcaggtg atgcgcaccg atcagcgccg ttatttcggc
     1561 cacccggatc tggtcatgtt tatccagcgg ttgagtcatc aggcgcagca acgggggctc
     1621 ggaaccgtcc tgataggcga catggggatg cctgccggag gccgctttaa tggcggacac
     1681 gccagtcatc agaccgggct tgatgtggat attttcttgc agttgccgaa aacgcgctgg
     1741 agccaggcgc agctattgcg cccgcaggcg ttagatctgg tgtcccgcga cggtaaacat
     1801 gtcgtgccgt cgcgctggtc gtcggatatc gccagtctga tcaaactggc ggcacaagac
     1861 aatgacgtca cccgtatttt cgtcaatccg gctattaaac aacagctttg cctcgatgcc
     1921 ggaagcgatc gtgactggct acgtaaagta cgcccctggt tccagcatcg cgcgcatatg
     1981 cacgtgcgtt tacgctgccc tgccgacagc ctggagtgcg aagatcaacc tttacccccg
     2041 ccgggcgatg gatgcggcgc tgaactgcaa agctggttcg aaccgccaaa acctggcacc
     2101 acaaagcctg agaagaagac accgccgccg ttgccgcctt cctgccaggc gctactggat
     2161 gagcatgtac tctgatggac aatttttatg atctgtttat ggtctccccg ctgctgctgg
     2221 tggtgctgtt ttttgtcgcc gtactggcag gatttatcga ttctatcgcc ggaggcggag
     2281 ggctgctcac tatccctgcg ctgatggccg ccgggatgtc gccggcaaac gcgttggcga
     2341 ccaataaatt acaggcgtgc ggcggctccc tctcgtcttc gctctatttt attcgccgta
     2401 aagtggtaaa cctggccgag caaaagctca atattctgat gacgttcatt ggctcgatga
     2461 gcggcgcgct gctggtgcag cacgtgcagg cggatatttt gcgccagatc ttgcccatcc
     2521 tggtgatttt catcggcctc tattttttat tgatgccgaa gctgggcgag gaagatcgcc
     2581 agcgccgcct gtatggatta ccgttcgcgc tgatagccgg gggatgcgtc gggttttacg
     2641 acggcttttt cgggcctgcc gcagggtcgt tttacgctct ggcgtttgtc accttatgtg
     2701 gctataacct ggcgaaatcc acggcacatg ccaaagtgct taacgctacc tccaacgttg
     2761 gcggcctgct gttatttatc atcggcggca aagtgatctg ggcgacgggc tttgtgatgc
     2821 tggttggtca gtttttaggg gcgcgaatgg ggtcgcgtct ggtgttgagc aaaggccaaa
     2881 agcttatcag accgatgatc gttattgtct cggcggtgat gagcgccagg ttactttatg
     2941 atagccacgg acaggagatc ctccactggt tggggatgaa ttaatgaaca gtacgcacca
     3001 ttacgaacaa ttaattgaga tttttaacgg ctgctttgcc gaagaattta atacccgtct
     3061 gattaaaggc gacgacgaac cgatctatct tcctgctgac gcgcaggtac cgtaccaccg
     3121 tatcgtcttt gcgcatgggt tttacgccag cgcgctgcat gagatttctc actggtgtat
     3181 cgccggtaag gcgcgccgcg aactggtcga ctttggttac tggtactgcc cggacggacg
     3241 cgacgcgcag acccaaagtc aatttgaaga cgttgaggtg aagccacagg ctttcgactg
     3301 gttgttttgc gtggcggcgg ggtatccctt taaacgttag ttgcgacaat ctggaaggcg
     3361 atattgagcc ggatcgcgtg gcgtttcagc gccgggttca tgcgcaggta atggcgtatc
     3421 tggagcaggg cattcctgaa cgtccggccc gcttcatcaa agcgctacag aattactatc
     3481 acacgcccga acttaaggcg gaacagttcc cgtggccgga agcgcttaat taaagccagc
     3541 gccacgttta caatgaggaa agaagatgat cgcggagttt gaatcacgca ttctggcatt
     3601 aattgacgat atggtagagc acgccagcga cgatgagctt tttgccagtg gatacctgcg
     3661 tggccacctg acgttagcca ttgccgagct ggagagcggt gatgaccact ccgttgaggc
     3721 ggtctatgcc aacgttagcc aaagtctgga gaaagcgatc ggcgccggcg aactgtcgcc
     3781 gcgcgatcag gcgttagtca aagcgatgtg ggacaatttg ttcgacaagg caaaacaata
     3841 acgccgtgga ccggaaggcg acgcttgccg ccttccgcta ttgactggcc cattacttca
     3901 ccgcttttcc cttcaataac tttctcaccc ataaccgatt tggatttaac gccgccagcg
     3961 taccggcatc cagtggaatc ggctcgttac tcatctgcgc cgccagaatt tctgcgcata
     4021 atggcgctga acacaaacca cgcgatccca gcgcgccgag cataaataaa cccggataca
     4081 caggcgcaga cgccgccgac gttttattat cggctaaatc ggcgtaatgc gtcagcgtgg
     4141 cgtggtaatc cgggacattg cccaccatcg gcagatggtc gcgggtggcg caacgcacgc
     4201 cgcaacgggc gctgttgccg ctaacgtcaa cctctatggc ccagttcgca tccggaaaac
     4261 agtcaagcag acgctgtcgg ttctgacgct gatcttcttc gcgccagacg gtgctt
//
LOCUS       DAJVSD010000304         4124 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.304, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000304 DAJVSD010000000
VERSION     DAJVSD010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4124
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.304"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..559
                     /locus_tag="OQP62_004146"
     CDS             <1..559
                     /locus_tag="OQP62_004146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015406296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1723543.1"
                     /translation="MAAAGMMYGASVYAVDPPTAGPFGSGKITFTGTITNSPCDIAPG
                     DDAITVPFGQISYRKLNTADATTDSKPFTIHLQNCAFDPNIPDTAGSAGKMSKVTVSF
                     SGGANVAKKAYTTSGSAQHVGVQLLKSDNTAIIEPNTQMPEDDAQQLQAGNNELNFYA
                     RLIALDNGVTPGDFTASVTYTLKYL"
     gene            679..3168
                     /gene="stdB"
                     /locus_tag="OQP62_004147"
     CDS             679..3168
                     /gene="stdB"
                     /locus_tag="OQP62_004147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial outer membrane usher protein StdB"
                     /protein_id="HCS1723544.1"
                     /translation="MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSR
                     EGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGRDAVVICVTTDMVAMLGLKDKIIHG
                     LKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVT
                     AGLLDYSLMVNRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSD
                     FYLPQTYLFRALPALRSKLTLGQTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPK
                     ISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLDVSVRESDGSVRTWQ
                     VNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTASPDFLLGEATWGAFNNTSLYGGL
                     IASTGDYQSAALGIGQNMGLLGALSADVTRSDARLPHGQKQSGYSYRINYAKTFDKTG
                     STLAFVGYRFSDRHFLSMPEYLQRRATDGGDAWHEKQSYTVTYSQSVPVLNMSAALSV
                     SRLNYWNAQSNNNYMLSFNKVFSLGELQGLSASVSFARNQYTGGGSQNQVYATISIPW
                     GDSRQVSYSVQKDNQGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSR
                     LPWGQAAADATLQPGQYRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGV
                     PVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPEDVDVSSSVISQVLTEGAVGYR
                     KIDASQGEQVLGHIRLADGASPPFGALVVSGKTGRTAGMVGDDGLAYLTGLSGEDRRT
                     LNVPWDGRVQCRLTLPETVTLSRGPLLLPCR"
     gene            3209..3952
                     /locus_tag="OQP62_004148"
     CDS             3209..3952
                     /locus_tag="OQP62_004148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
                     /protein_id="HCS1723545.1"
                     /translation="MKNSRRSRVILLALAAAWSQYSPAAVNVDRTRIIMDAPQKTVAI
                     TLNNDDKTTPFLAQSWVTDADGVRTDALIALPPLQRIDAGQKSQVRITQVRGLTDKLP
                     QDRETLFWFNVRGVPPKSEDDNVLQLAMQSQLKLFYRPKAIIRSSSDQPERKLTAERN
                     AGHLTLRNPTPYYITVAWLGADRSHRLSGFREGVMVPPLGSLPLKAVLPAETRTLWVG
                     YIDDYGGLQMNRYTCDALNCAFKDAGVTS"
BASE COUNT          920 a         1195 c         1201 g          808 t
ORIGIN      
        1 catggcggct gccggtatga tgtatggcgc ttctgtatat gcagtcgatc caccaacagc
       61 aggcccgttc ggctcaggta aaattacctt tactggtacc atcaccaact ccccctgtga
      121 tatcgcaccg ggcgacgatg cgatcaccgt tccatttgga cagatttctt accgtaaact
      181 gaataccgcc gatgcaacca cggactcaaa accgttcacc attcatctgc agaactgtgc
      241 tttcgatccg aatatcccgg acacagctgg ctccgcaggg aaaatgtcca aagtgaccgt
      301 ctctttctct ggcggagcca atgtcgcgaa aaaggcttac accaccagcg gcagcgcaca
      361 gcatgttggt gtccagctac tgaagagtga caacaccgca attatcgagc ccaacaccca
      421 gatgccggag gacgacgctc agcaactgca ggccggaaac aacgaactca acttctatgc
      481 ccggctaata gcactggata atggcgtcac gcccggtgac ttcaccgcat ctgtcaccta
      541 cactctgaaa tacctgtgat tttacgcggt aaataacgac agggagaagc cgtccacgga
      601 ggggttcgga cggcttttat atctgaccat gcctgcgggc tgtctgttac acggacgaca
      661 acacgaaagc gccatgccat gaaaattacc cggcttgcca ttctgattac cctgacattt
      721 tccgtcctga agtcgcaggc cacggagttc aatgccagcc tgctggacag cgggaacctg
      781 tctaacgtgg acctcacggc cttcagccgc gaggggtatg tggcgcccgg taactatatt
      841 ctcgatatct ggctcaatga ccagccggta cgggaacagt atccagtcag ggttgtaccg
      901 gttgccggac gcgatgcggt cgtcatctgt gtgacaacag acatggtggc catgctgggt
      961 cttaaggata agattattca tggcctgaaa cccgttaccg gtatcccgga cgggcaatgc
     1021 cttgagctgc gctccgctga cagtcaggta cggtacagcg ctgaaaatca gcgtctgacc
     1081 ttcattattc cccaggcctg gatgcgttat caggacccgg actgggtgcc cccttcacgc
     1141 tggagcgacg gcgtcaccgc tggcctgctt gattacagcc tgatggtcaa ccgctatatg
     1201 ccgcagcagg gggaaacctc taccagctac agcctctacg gcaccgccgg gtttaatctc
     1261 ggcgcctggc ggttgcggag cgattaccag tacagccgtt ttgacagtgg gcagggcgca
     1321 tcacagtccg atttttatct gccgcagacg tatctgttcc gtgccctgcc agcactgcgc
     1381 tcaaaactga cgctcggaca gacgtacctc agctccgcta tttttgactc cttccgcttt
     1441 gctgggctca ctttggccag cgatgagcgc atgctgccgc cctctcttca ggggtatgcc
     1501 ccgaaaatta gcggcattgc gaacagtaat gcacaggtca ccgtcagcca gaatggtcgc
     1561 attctgtacc agacccgggt gtcaccgggg ccttttgagc ttcccgacct gagccagaat
     1621 atcagcggca acctggatgt cagcgtccgg gaaagcgacg gcagcgtccg gacctggcag
     1681 gtcaacacgg ctagcgtccc ctttatggca cgccagggac aggttcgcta taaggtggcc
     1741 gccggacgtc cgctgtacgg cggtacgcat aacaacagca cggccagccc tgactttctg
     1801 ctcggggagg ccacctgggg agcatttaac aacacgtcgc tgtatggcgg cctcattgcc
     1861 tccaccggcg actaccagtc cgcggcgctc gggatcggcc agaatatggg gctgctgggc
     1921 gctctgtctg cggacgtcac ccgctcagat gcgcggttgc cgcacgggca gaagcagtcc
     1981 ggttacagct accgtatcaa ctatgccaaa acgtttgata aaaccggcag taccctggcg
     2041 ttcgtcggat accgcttctc ggaccgccat tttctgtcca tgccggagta cctgcagcgt
     2101 cgggccaccg acggcggcga tgcatggcat gaaaaacaga gctacaccgt gacttatagc
     2161 cagtccgttc cggtactcaa catgagcgcg gccctctcgg taagccggct caattactgg
     2221 aatgcgcagt ccaacaataa ctacatgctc agcttcaaca aagtgttcag tctcggcgag
     2281 cttcaggggc tctcggcctc ggtgtcgttt gcccgtaacc agtacaccgg cgggggcagc
     2341 cagaatcagg tctacgccac catcagtatc ccgtggggcg acagccgcca ggtgagctac
     2401 agcgtgcaga aggataacca gggcggcctg cagcagaccg tgaattacag cgatttccat
     2461 aacccggaca ccacatggaa catcagcgcc ggtcataacc gctatgacac cggcagtaac
     2521 agcagcttca gcggcagcgt gcagagccgt ctgccgtggg gccaggcggc agcggacgcc
     2581 accctgcagc ccggacagta ccgcagcctg ggcctgagct ggtacggctc ggtgaccgcc
     2641 accgcccacg gcgccgcctt cagccagtcg atggccggga atgagcctcg catgatgata
     2701 gataccggag acgtggccgg tgtaccggtg aacggcaaca gcggggtgac caaccgcttc
     2761 ggggtgggcg tggtgagcgc cggcagcagc tatcggcgca gcgatatttc ggttgatgtg
     2821 gccgccctgc cagaggacgt ggacgttagc agctccgtca tcagccaggt gctgacggag
     2881 ggcgcggtgg gctaccggaa gattgacgcc agccaggggg agcaggtgct cggtcatatc
     2941 cggctggctg atggcgccag tccaccgttt ggcgccctgg tggtgtccgg aaaaaccggc
     3001 agaaccgcgg ggatggtcgg ggatgacggt ctggcctacc tgaccggact cagcggggaa
     3061 gaccgccgga ccctgaacgt gccctgggat ggccgggtgc agtgcagact caccctgccg
     3121 gaaacggtga cactcagtcg ggggccgctg ttactgccct gcagataaaa atatccctgt
     3181 cacagagcag gactaacgga gaaaacaggt gaaaaacagc agaagaagcc gtgtgatttt
     3241 actcgcactg gcggcagcat ggagccagta cagcccggca gccgtcaatg tcgaccggac
     3301 ccgtattatc atggatgcac cgcagaaaac ggtggccatc acgctgaata acgatgacaa
     3361 aaccacgccg ttcctggcgc agtcctgggt gacggacgct gacggggtga gaacggatgc
     3421 gctgatagcg ctgccaccgc tgcagcgtat tgatgccgga cagaaatccc aggtccgtat
     3481 cacccaggtt cgcgggctga cagacaagct ccctcaggac agggaaacgc tgttctggtt
     3541 taacgtgcgg ggcgttcccc cgaagtcaga agacgacaac gtcctgcaac tggccatgca
     3601 gagccagctg aaactgtttt accgtccgaa agccattatc agaagcagca gtgaccagcc
     3661 ggaaagaaag ctgactgctg agcggaatgc gggacatctg accctcagaa acccgacgcc
     3721 gtactacatc actgtggcgt ggctgggagc agaccgcagc cacaggctca gcggtttccg
     3781 cgagggcgtg atggtgccgc ccctggggag cctgccctta aaggctgttc tgccggcaga
     3841 aacccggacg ctgtgggtgg ggtatataga tgattatggt ggactgcaga tgaaccgcta
     3901 cacctgtgat gccctgaact gcgcgtttaa ggacgcaggg gtgacatcat gacagaatgg
     3961 atttttaatc tgaaaacaaa actgaccgtg ctggtgatga tgttgtgttc tttatgtgtg
     4021 actaaagtgt atgcggttga gccaggtata aatgaatgtg tagtcacttc tggtcagaat
     4081 attaatttaa gaagtataaa tttgacaacc gatgatttta aacc
//
LOCUS       DAJVSD010000305         4115 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.305, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000305 DAJVSD010000000
VERSION     DAJVSD010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4115
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.305"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..1007
                     /gene="fepD"
                     /locus_tag="OQP62_004149"
     CDS             <1..1007
                     /gene="fepD"
                     /locus_tag="OQP62_004149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Fe(3+)-siderophore ABC transporter permease"
                     /protein_id="HCS1723546.1"
                     /translation="SCSFSVTRAFAVPGLLLLLSLAAVLSLVIGAKPLPAAVVLEAFT
                     GVCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGILGVNNGASF
                     AIVLGAALFGFSTPLEQLFMAFSGALIASLIVAFTGSQGGGQLSPVRLTLAGVALGAV
                     LEGLTSGIALLNPEVYDQLRFWQAGSLDIRSLQTLKVALAPVVIAGIVALFLSRALNS
                     LSLGSDTATALGSKVARTQLIGLLAITVLCGSATALVGPIAFIGLMMPHMARWLVGAD
                     HRWSLPVTLLATPALLLFADIIGRLLVPGELRVSVVSAFIGAPVLIFLVRRKSSGGGL
                     "
     gene            1007..1996
                     /gene="fepG"
                     /locus_tag="OQP62_004150"
     CDS             1007..1996
                     /gene="fepG"
                     /locus_tag="OQP62_004150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-enterobactin ABC transporter permease"
                     /protein_id="HCS1723547.1"
                     /translation="MFLSRRLIVSCLLLAAGCFAIGLWSLQSGAVPLETGQIIAALLG
                     DAPRNITLVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSG
                     VLVAMVLFGQHLTAIALAAMAGGIVTSLIVWLLAWRNGIETFRLIIIGIGIRAMLVAF
                     NTWLLLQASLETALTAGLWNAGSLNGLTWAKTWPSAPLIMVMLTGAALLVRRMRLLEM
                     GDDSACALGVSVERSRLMLMLVAVSLTAAATALAGPISFIALVAPHIARRLSGTARWG
                     LTQSALCGALLLLAADACAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQESRKK"
     gene            1993..2787
                     /gene="fepC"
                     /locus_tag="OQP62_004151"
     CDS             1993..2787
                     /gene="fepC"
                     /locus_tag="OQP62_004151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-enterobactin ABC transporter ATP-binding
                     protein"
                     /protein_id="HCS1723548.1"
                     /translation="MTESVARLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGC
                     GKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTPGDITVQELV
                     ARGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQ
                     ETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALR
                     EGNIVAQGAPKEIVTAELIEKIYGLRCMIIDDPVAGTPLVVPLGRR"
     gene            complement(2840..3976)
                     /gene="fepE"
                     /locus_tag="OQP62_004152"
                     /pseudo
     CDS             complement(2840..3976)
                     /gene="fepE"
                     /locus_tag="OQP62_004152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459581.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen length regulator"
BASE COUNT          820 a         1158 c         1147 g          990 t
ORIGIN      
        1 tgtcatgctc gttttccgtg acgcgcgcgt ttgccgtgcc cggattgttg ttattactga
       61 gtctcgccgc ggttttaagc ctggtcattg gcgcgaaacc gctgcccgcc gccgtcgtgc
      121 tggaggcgtt caccggcgtg tgccaaagcg ccgattgcac catcgtcctg gatgcgcgtt
      181 tgccgcgtac gctggccgga ttactggcag gcggcgcatt gggtctcgcc ggggcgctca
      241 tgcaaacact cactcgtaac ccgctcgccg acccggggat tctgggcgtt aacaacggcg
      301 ccagcttcgc cattgtactg ggcgcggcgc tgtttggttt ctccacgccg ctggaacagc
      361 ttttcatggc atttagcggc gcgcttatcg catcgctgat tgtcgccttc accggtagtc
      421 agggcggcgg ccaattaagc ccggtccgcc tgacactggc gggcgtggcg cttggcgcgg
      481 tactggaagg actaaccagc ggcatcgcgt tgttaaatcc agaggtctat gaccagcttc
      541 gcttctggca ggcgggatcg ctggacattc gtagcctgca aacgttgaaa gtcgcgctcg
      601 cgcccgtggt tatcgctggg atcgtggcgc tatttctgag ccgagcgctg aacagcctga
      661 gcctcggcag cgataccgcg acggcgctgg ggagtaaagt ggcgcgcacc caacttattg
      721 gtttactggc gattaccgtc ttgtgcggca gcgcaacggc gctggtcggc cctatcgcct
      781 ttattggtct gatgatgccg catatggcgc gttggctggt gggcgcagac caccgttggt
      841 cgctgccggt aacactactg gcaacccctg ctctgctgct ttttgccgat attattggtc
      901 gtctgttagt gccgggcgaa ctccgcgtat cggtcgtcag tgcgtttatc ggcgcgccgg
      961 tacttatctt tctggtacgc cgtaaatcga gcggaggcgg cctgtgatgt ttctttctcg
     1021 tcggcttatc gtaagctgcc tgcttctggc ggctggctgc ttcgccattg gcttatggag
     1081 cctgcaaagc ggcgccgtgc cccttgagac cgggcagatt attgccgcgc tgctgggcga
     1141 cgcgccgcgt aatatcaccc ttgtcgtaac cgaatggcga ctaccgcgcg tattaatggc
     1201 gctactgatt ggcgctgcgc ttggcgtcag tggcgcgatt tttcagtcgt tgatgcgtaa
     1261 cccgctaggc agccctgatg tgatgggctt taataccggc gcctggagcg gcgtactggt
     1321 cgcaatggtc ctgtttggcc agcatcttac cgcgatcgcg ctggcggcaa tggcgggcgg
     1381 tatcgtcacg tcattgattg tctggctgct cgcctggcgt aacgggattg aaactttccg
     1441 gctgattatc atcggtatcg gcatccgcgc gatgttagtc gcctttaata cctggcttct
     1501 gttgcaggcg tcgctggaaa cggcgctcac cgccggctta tggaacgccg ggtcgctcaa
     1561 cggtctgaca tgggcaaaaa cctggccttc ggcgccgctg attatggtga tgctgacagg
     1621 cgccgcgcta ctggtgcgtc gtatgcggct gctggagatg ggcgatgaca gcgcctgcgc
     1681 gctgggtgtt agcgtggagc ggtcacgcct gatgctgatg ctggtggcgg tgtcgctcac
     1741 cgctgctgca acggcactgg ctggccccat ctcgtttatt gcccttgtcg cgccgcacat
     1801 cgcccgtcgt cttagcggca cagcgcgctg gggattaacc cagtcggcgc tgtgcggcgc
     1861 gttattacta ctggccgccg atgcgtgcgc gcagcaactg tttatgcctt atcagcttcc
     1921 agtgggcgtg gtcaccgtca gcctcggcgg tatttacctt atcgtcttgt taattcagga
     1981 gtcccgcaaa aaatgaccga atccgtagcc cgtttgcgcg gcgaccagtt aacgctgggt
     2041 tatggcagct ataccgtcgc aaaaaacctt aatgtttcga ttccggacgg ccattttacc
     2101 gccatcatcg gccctaacgg ctgcggcaag tcgacgttgc tacgtacgct aagccgtctg
     2161 atgacgcctg ttgacggcca tgtctggctg gatggcgaac aaatacagcg ttacgccagt
     2221 aaagaggtgg cgcggcgcat cggattgctg gcgcaaaacg ccaccacgcc gggcgatatc
     2281 accgtacaag aactggtcgc cagagggcgt tatccgcatc agccgttatt tacccgctgg
     2341 cgcaaggaag atgccgacgc cgtcgccagt gctatgcgtg caacaggtat cacctcactg
     2401 gcggcgcaaa gcgtagacac gctgtccggc ggccaacgtc agcgggcgtg gatagccatg
     2461 gtgctggcgc aggaaacgtc catcatgctg ctggatgagc cgacaacgtg gctggatatt
     2521 agccatcaaa ttgatttgtt ggaattgtta agcgatctca accgtgaaaa aggctatacg
     2581 ctagccgccg tcctgcacga cctgaatcag gcctgccgat acgccacaca tttgattgca
     2641 ttacgcgaag gtaacattgt cgcacagggc gcgccgaaag agattgttac cgctgagctt
     2701 atcgaaaaaa tctatgggct gcgctgtatg attatcgacg atccggttgc cgggacgccg
     2761 ctggtggtac cgctggggcg gcgatagtcg cccacacaga tgacaaagcc ggatatcgct
     2821 atccggcttt tcgggtaaat cagactaacc gttcatctat cgccagcgcg ttttccattt
     2881 tacgcgagac catcgcgtga cgcagtaata cgccgccgca ggccatcata ccgccaatca
     2941 acgccgccag gataataatg atcgctttac ccgggccatc ttttttcact ggcagagacg
     3001 gcgacagttg atatttaaac ggggtaaact tcacgtcgct cacattcatt gccgccagtt
     3061 gttcaacata gtattgacgg ttacgcaaat caccgtcgat ctcggccacg tccgttaccc
     3121 ctttttcaat ttccagtttg cgggaaatac catccgcgcc gagggaaata gaaaaatccg
     3181 gatcatcttt taccgcctga ccattactgt aaaccggtct cttaatgcca gcggcgttgg
     3241 cgatttccag cgaataatga agacgttgaa tattggcatc aagctgattt ttgagacgca
     3301 cccgatccat cgccagcttt tcctgctcgt agcgggtttt gatttccagc tggttacgaa
     3361 tattttccag cgtctctttc acgacgatat cggagatgta ctgaatatag ccagccaaca
     3421 ctttttgcgc ttcttcccgc gtcggcgcgg taaaactcag cgtccacgac gtgaataacg
     3481 acgtttcatt tttcttgccg gcattgctgt ccaccgcttt cattttttcg ctcagcacga
     3541 caatcgcccg gtgaagatcc tgctcgtcta tttgcgcgcc ttttaattga tccatgacat
     3601 acggagaaga acgaagatat tcttccagca gcgagggcga gctaaacttt ttaataaaca
     3661 gattaaatac gctggcccga tcaacgctta cctccatatc caacacgcgc agcgcggtca
     3721 acgttctctc cagcccctgc tactgtaccg actccgccgg tgtgacaatc gcctggctgg
     3781 tccatttttg cggcagcaga aaggacagaa gcaaccccac gcacgcaaag gcgaaaacgg
     3841 tagcaagaat acgacgtttc gcctgccata acacctctat aaggctaaac aaatcgattt
     3901 catgactgtt ggcgggcggc agtgagtaac ctgcaaatga ctgatttttc tcttgtttta
     3961 cattaagaga tggcatgccg tatgacctga aaactttatc caatgaaaga acacattcct
     4021 gtcagagatt ctaacagcaa gtcagaatta tccgaaacaa tctttacgcg ccagtgcccg
     4081 aaaagctaaa tattcggaat taaacttgcc tgtag
//
LOCUS       DAJVSD010000306         4061 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.306, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000306 DAJVSD010000000
VERSION     DAJVSD010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4061)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4061)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4061
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.306"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            1..741
                     /locus_tag="OQP62_004153"
                     /pseudo
     CDS             1..741
                     /locus_tag="OQP62_004153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460185.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
     gene            complement(847..1104)
                     /locus_tag="OQP62_004154"
     CDS             complement(847..1104)
                     /locus_tag="OQP62_004154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1723549.1"
                     /translation="MKNVKNLIAAAVLSSLSFASFAAVEVQATPEGQQKFGTISANGG
                     TNLGSLEDQLAQKAQEMGAKSFRITSVTGPNTLHGTAVIYK"
     gene            1346..1981
                     /gene="comR"
                     /locus_tag="OQP62_004155"
     CDS             1346..1981
                     /gene="comR"
                     /locus_tag="OQP62_004155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family copper-responsive transcriptional
                     repressor ComR"
                     /protein_id="HCS1723550.1"
                     /translation="MTTDTTSCAKKSRGRPKVFDREAALDKAMTLFWQHGYEATSLAD
                     LVEATGAKAPTLYAEFTNKEGLFRAVLDRYITRFASKHEAQLFCEEKSVESALEDYFT
                     EIAACFTSTDTPAGCFMINTSATLAASSRDIARTVKSRHAMQEQTLIQFLRQHQERGE
                     IPAHCNPQALAEYINCILQGMSISAREGATFEQLMQITRTTLRIWPELLKS"
     gene            complement(2055..2594)
                     /locus_tag="OQP62_004156"
     CDS             complement(2055..2594)
                     /locus_tag="OQP62_004156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HCS1723551.1"
                     /translation="MNKSMLAGIGIGVAAALGVAAVASLNVFDRGPQYAQVISAKPIK
                     ETVKTPRQECRNVTVTHRRPVQDENRIAGSVLGAVAGGVIGHQFGGGRGKDVATVVGA
                     LGGGYAGNQIQGSMQESDTYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDKD
                     PGTQIPLDGNGQLVLNNKA"
     gene            complement(2771..>4061)
                     /gene="ndh"
                     /locus_tag="OQP62_004157"
     CDS             complement(2771..>4061)
                     /gene="ndh"
                     /locus_tag="OQP62_004157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017384716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone dehydrogenase"
                     /protein_id="HCS1723552.1"
                     /translation="KKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHSHLWKP
                     LLHEVATGSLDEGVDALSYLAHARNHGFQFQLGSVMDIDREAKTITIAELRDEKGELL
                     VPERKIAYDTLVMALGSTSNDFNTPGVKEHCIFLDNPHQARRFHQEMLNLFLKYSANL
                     GANGKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNDALNVTLVEAGERILPA
                     LPPRISSAAHNELTKLGVRVLTQTMVTSADEGGLHTKEGEYIQADLMVWAAGIKAPDF
                     MKEIGGLETNRINQLVVEPTLQTTRDPDIYAIGDCASCARPEGGFVPPRAQAAHQMAT
                     CAMNNILAQMNGKPLKAYQYKDHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRIARFVY
                     ISLYRMHQIALHGYFKTGLMMLVGSINRVIRPRLKLH"
BASE COUNT          948 a         1140 c         1013 g          960 t
ORIGIN      
        1 gcgcttaccg cgaccatcat gcttgccctt cccgcgcagg cgaatacgtg gcctcttccg
       61 ccccccggca gtcgactggt gggagaaaat aaattccatg tcgttgaaga cgacggcggc
      121 tcgctggagg cgatcgccaa aaaatataac gtgggctttt tagccctgtt acaggccaac
      181 cccggcattg atccttacgt gccacgcgca ggcagcgtgc tgacgattcc gctgcaaacg
      241 ctgctaccgg acgcgccacg tgaaggtatc gtcattaacc tcgctgaatt acggctttac
      301 tattatcaac cggggaaaaa tacggtcacg gtctacccta tcggcattgg ccaactgggc
      361 ggcgataccc tgacgccaac gatggtgacg accatttcgg ataaacgcgc caatccaacc
      421 tggacgccga ccaccaatat tcgcgcccgt tataaagcgc aaggcatcga tctccccgcc
      481 gtggtgcctg ccggtcccga taacccaatg gggcatcacg cgattcgttt agcggcctac
      541 ggcggcgtct atctgttaca tggcacgaat gccggttttg gcattggtat gcgcgtcagt
      601 tccggctgta tccgtctgcg cgacggtgat atagagacat tgttccgtca agtcacgccg
      661 ggaaccaaag tgaatattat caatacgccg attaaagcct cggtggagcc aggcggcgtg
      721 cgactggtgg aagttcatca gtcgctgtaa gcgtgaatag ctgactgaca aaaaagcctc
      781 gcgatgcatc gcgaggcttt ctctttttat tgtggcaatc gcagcggcat taatgagggt
      841 taatgcttac ttatagatta ccgccgtacc gtggagggta ttcgggccgg taacagaggt
      901 aatacggaaa gacttcgccc ccatttcctg cgctttttgc gccagctgat cttccagcga
      961 gcccagattc gtgccgccat tcgcggaaat ggtgccgaac ttctgttgac cttctggcgt
     1021 tgcctgaact tcaacggcgg cgaagctggc gaatgagagc gaactcagta ccgcagcagc
     1081 gatgaggttt tttacgtttt tcatagtgat gacctttagc agatgaatgg gtgtcgcaag
     1141 cattaactta acgatcgata aattaatcat agatgtgatc tacatcacac gtcaacctct
     1201 ttttataatg atcgttatat aatttataaa gatgttattt ttcatgtgaa tagaattgat
     1261 ttatttttct aatgaatact ctggagccag aagtggtttg tttttataat agagagaccg
     1321 ctctttaaac aggtacaacg gcatcatgac aacggatacc acgagttgcg cgaagaaaag
     1381 ccgtggccga ccaaaagtgt tcgacaggga agccgcgctt gataaggcca tgactctctt
     1441 ctggcagcac ggctatgaag caacttcgct tgccgatctc gtagaggcta ccggggcgaa
     1501 agcgcctact ctctatgcgg aattcactaa caaagaagga ttatttcgcg ctgtcctgga
     1561 tcgctacatc actcgctttg cctcaaaaca cgaagcccag ctcttttgtg aagagaaaag
     1621 cgtagaatcg gcgctggaag attacttcac agaaattgcc gcctgcttta ccagtacaga
     1681 cacgccggct ggctgcttta tgattaatac gtccgccacc ctggccgcct cctcgcgcga
     1741 tatcgcccgc acggtaaaat cacgccacgc catgcaggaa cagacgctca tccagtttct
     1801 gcgccaacat caggagcgcg gtgaaattcc ggcgcactgt aacccgcagg cgctcgcgga
     1861 atatataaac tgtattttac agggaatgtc gatcagcgcc cgtgaaggtg ccaccttcga
     1921 acaactgatg caaattacgc gtacgactct gcgcatctgg cctgaactgc tcaagtcctg
     1981 aacgacgcgg cttcggataa aaaaagcccc tcagcctgag cgaatgaggg gctaacttgc
     2041 agagtacagc ttttttatgc tttgttattc agaaccagtt gaccattgcc gtcgagggga
     2101 atttgcgttc cggggtcttt atccatgcgg attttgccct gctgatcgcc aattttgtag
     2161 gtcacgtcgt agccaagcat cttttcagat ttgtcataca ccgtcttaca gcgttgctgc
     2221 gtggtagtgt aggtatcact ctcctgcatt gatccctgga tttgattgcc agcataaccg
     2281 ccgcccagcg ccccgacgac cgtcgccaca tctttaccac gaccgccgcc aaattgatgt
     2341 ccaatcacgc cgcctgctac tgcgccaagc accgagccgg caatacggtt ttcgtcctga
     2401 accggtctac gatgcgtgac cgtgacatta cggcactcct gacgcggcgt ttttaccgtc
     2461 tctttaatcg gtttagccga tatcacctgc gcatactgcg gaccacgatc aaatacgttg
     2521 agactggcca ctgccgccac acccagcgca gccgctacgc caatccctat acccgccaac
     2581 attgatttat tcacgggagt tcctccttcg ttgctattgg taacaatttt gcaaccagta
     2641 tgcgaacaaa gccaatcgga atgaggatga aaaatgcggg atgaggcggt aaagctgaag
     2701 gattcggaca actccgaagc aagtgatgga gaagcgctca ccggcgagca gccggtgagg
     2761 cgcagaaaaa ttaatgcagt ttcaggcgcg gacgaatgac gcggttaata ctgcccacca
     2821 gcatcatcag gccggtttta aagtatccat gcagcgctat ctggtgcata cggtatagcg
     2881 agatatacac gaagcgggcg atacgtcctt caatcatcat tgaaccgcgg gtcaggttcc
     2941 ccatcagact acccacggta gagaagttgg acagagagac cagcgatcca tgatctttat
     3001 actggtaagc tttcagcggc ttgccattca tctgcgccag aatgttattc atcgcgcagg
     3061 tagccatctg atgcgccgcc tgagcgcgag gcggcacaaa acctccctcc ggacgtgcgc
     3121 aggaagcgca gtcgccaatc gcataaatat caggatcacg cgtggtttgc agcgtcggtt
     3181 ccaccaccag ttggttaatg cggttcgttt ccagaccacc aatttctttc ataaaatctg
     3241 gcgctttgat acccgccgcc cacaccatca gatcggcctg aatatattca ccttctttcg
     3301 tatgcagacc gccttcgtcg gcgctggtga ccatagtttg cgtcagtacg cgaacgccca
     3361 gtttggtcag ttcattatgc gcggcgctgg agatacgcgg cggcaacgca ggcagaatac
     3421 gctcgccagc ctcaaccaac gtcacgttca acgcgtcgtt ggtcagcccc ttataaccat
     3481 agctatgcag ctgttttacc gcattatgca gttcagccga cagctcaacc cccgtcgcac
     3541 cgccgccaac gatggcgata ttgaccttac cgttcgcgcc caggttagcc gaatacttga
     3601 ggaacaggtt cagcatctcc tggtgaaaac ggcgcgcctg atgcgggtta tcgaggaaga
     3661 tacagtgctc tttcacgccc ggcgtgttga aatcattaga ggtgctgccc agcgccatca
     3721 ccagcgtgtc atacgcgatt ttgcgctccg gcaccagcag ttcgcccttt tcatcacgca
     3781 actcggcaat ggtgatggtc ttcgcttcgc gatcgatatc catcaccgac cccagctgga
     3841 actggaaacc atgattacgc gcatgagcca gatagctcag cgcatccacg ccttcgtcca
     3901 gagagccagt cgccacttcg tgcagcaatg gtttccacag atggctgtga tttctgtcta
     3961 ccagcgtgat tttcgctttt ttcttgcgcc ccagtttatg gcctaactgc gtcgccattt
     4021 ccagcccgcc agcgccgccg ccgacaatca cgatcttttt t
//
LOCUS       DAJVSD010000307         4004 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.307, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000307 DAJVSD010000000
VERSION     DAJVSD010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4004)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4004)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4004
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.307"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..485)
                     /locus_tag="OQP62_004158"
     CDS             complement(<1..485)
                     /locus_tag="OQP62_004158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="effector protein steA"
                     /protein_id="HCS1723553.1"
                     /translation="MPYTSVSTYARALSGNKLPHVAAGDYENKLSTKIMKGILYVLTA
                     GLAYGFTRVIEHYCNVTPKVDEFCANAGNIHNHLADAVRDEQFIIDVELSDGRMLTFE
                     QLSLMAGREPIVRISDGEHSVEVKGSFEDICMRLEEGFFEAPAYYGYDIDEKYKTVRE
                     R"
     gene            998..2491
                     /gene="ansP"
                     /locus_tag="OQP62_004159"
     CDS             998..2491
                     /gene="ansP"
                     /locus_tag="OQP62_004159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparagine permease"
                     /protein_id="HCS1723554.1"
                     /translation="MKTQTTHAAEQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAI
                     GTGLFLGAGARLQMAGPALALVYLICGIFSFFILRALGELVLHRPSSGSFVSYAREFL
                     GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGDVPQWVFALGALTIVGTMNM
                     IGVKWFAEMEFWFALIKVLAIVIFLVVGTIFLGTGQPLEGNATGFHLITDNGGFFPHG
                     LLPALVLIQGVVFAFASIELVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLV
                     LLLPWNAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMS
                     MGGSAPKFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIAS
                     WAFIMVCQMRLRQAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTYT
                     IASLPLIAILLVAGWFGVRRRVAEIHRTAPVTADSTESVVLKEEAAT"
     gene            complement(2568..2789)
                     /locus_tag="OQP62_004160"
     CDS             complement(2568..2789)
                     /locus_tag="OQP62_004160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="HCS1723555.1"
                     /translation="MKKLFICSGLGMMFFMLAGCTTNYVMTTKNGQTIVTQGKPQLDK
                     ETGMTSYTDQEGNQREINSNDVAQLIKAD"
     gene            complement(2934..3995)
                     /locus_tag="OQP62_004161"
     CDS             complement(2934..3995)
                     /locus_tag="OQP62_004161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HCS1723556.1"
                     /translation="MHLRHLFSPRLRGSLLLGSLLVASSFSTLAAEDMLRKAVGKGAY
                     EMAWSQQENALWLATSQSRKLDKGGVVYRLDPVTLEITQAIHNDLKPFGATINAATQT
                     LWFGNTINSAVTAIDAKTGDVKGRLVLDARKRTEEVRPLQPRELVADAATNTIYISGV
                     GKESAIWVVDGETIKLKTTIENTGKMSTGLALDSKAQRLYTTNADGEFITIDTASNKI
                     LSRKKLLDDGKEHFFINLSLDTAGHRAFITDSKATEVLVVDTRNGNILAKIAAPASLA
                     VLYNPTRNEAYVTHRQAGQVSVIDAKTYNVVKTFDTPTYPNSLALSADGKTLYVSVKQ
                     KSTREQEATQPDDVIRIAL"
BASE COUNT          911 a         1008 c          980 g         1105 t
ORIGIN      
        1 attcgctctc tgacggtttt atatttttca tcaatatcat aaccatagta tgctggcgct
       61 tcaaaaaagc cctcttccag tctcatacag atatcttcaa aggacccctt aacctcaacg
      121 ctatgttcgc catccgatat cctgacgatt ggctcacgtc cagccatcag cgagagttgt
      181 tcgaatgtta acatccgacc atcagaaagc tcgacatcta taataaattg ttcatcacgt
      241 acagcatctg caaggtgatt atggatattc cctgcattgg cacagaactc atcaacttta
      301 ggcgtaacat tgcaataatg ttcaattact cgcgtaaatc cgtaggccag tcctgcggta
      361 agcacataca agatgccttt catgattttt gttgataatt tattttcata atctcctgca
      421 gcaacatgag gtagcttatt tcctgataaa gctctggcat aggtagaaac tgatgtatat
      481 ggcatatcct gctccttcaa attttgctca atagctttat atgtcctact cctctctcat
      541 tatgacgata tgtcaatcaa caaaattgct caaaggcata cattttcagg agaaaatgag
      601 aataacaggc gcaacggcct gatcttatgc tgcttcaata tcgtcaggtg gtttatcgtt
      661 cgaggtcata tctatgacca taaatccctg cagggattaa ctctgattaa ttattgcgca
      721 acgcaatcac tgcggatttg tgctgaaagc ttatctggct gaatcgtgac cacaccgcac
      781 cacatctgac cgcacaaata aacacgacat cctcattttg ttctttccgt atgttttgcg
      841 tcatttaaca attgcaggta ggatgctccg ccggcggttt tatccctgtc acagaatcag
      901 ggaaaagcgg cattcgccat tgcaggcaat cgattggtga gcgcccgtcg cggcataagg
      961 aatttttctg tcaggacagg ctataacagg taacgtaatg aaaacacaga ctacgcacgc
     1021 cgcagaacaa catgcggcga aacgacgctg gctgaacgcc catgaagagg ggtatcacaa
     1081 agcgatgggg aatcgtcagg ttcagatgat tgctatcggc ggcgcgattg gcaccggttt
     1141 atttttaggt gcaggcgccc gattgcaaat ggccggaccg gcactggcgc tggtctatct
     1201 gatatgcggc attttttctt ttttcatttt acgcgcgctg ggcgaactgg tattgcatcg
     1261 cccttccagc gggagcttcg tctcctacgc ccgtgaattt ttgggtgaaa aagcggccta
     1321 cgtagcaggc tggatgtact ttattaactg ggcgatgacc gggatcgtcg atatcaccgc
     1381 agtggcgtta tacatgcact actggggcgc atttggcgac gttccgcaat gggtgtttgc
     1441 gctcggcgcg ttaaccattg tcggtaccat gaacatgatc ggcgtaaaat ggtttgccga
     1501 aatggagttc tggttcgcgc tgataaaagt actcgccatt gttatcttcc tggtggtagg
     1561 cacgattttt ctcggtaccg gtcaaccgct tgagggtaat gccaccggtt ttcacctgat
     1621 tacagataat ggcggctttt tcccgcacgg cctgttgccc gcgctggtac tgattcaggg
     1681 cgtggtgttc gcttttgctt cgattgaatt ggtcggtacc gccgctgggg agtgcaaaga
     1741 tccacagacg atggtgccaa aagccatcaa tagcgtgatc tggcgtattg gtcttttcta
     1801 tgtaggatcg gtcgtattgc tggttttgct gctgccgtgg aacgcctacc aggcggggca
     1861 aagtccgttt gtcaccttct tttctaaact tggcgtgcct tatatcggca gtattatgaa
     1921 tatcgtggtg ttaaccgccg cgctttccag cctgaactcc gggctttact gtacggggag
     1981 aattttacgt tcaatgtcga tgggggggtc cgcgccgaaa ttcatggcga aaatgagccg
     2041 tcagcatgtg ccctatgcgg gtattctggc gactctggtg gtttacgtgg tcggcgtgtt
     2101 ccttaattat ctggtcccct cccgcgtgtt tgagatcgtt cttaattttg cctcgctcgg
     2161 cattatcgcg tcgtgggcgt ttatcatggt gtgccagatg cgtttacgcc aggcgataaa
     2221 agaaggcaaa gccgcagacg tcagttttaa actgcccggc gcgcctttca cctcctggtt
     2281 aacgctgctg tttttattaa gcgtgctggt actcatggcg tttgactacc cgaatggaac
     2341 ttacactatc gcctcgttgc cgctgatcgc tattctgctg gtcgccggct ggtttggcgt
     2401 gcgacgtcgc gtggcggaga tccatcgcac tgcgccagtg acggcggatt cgacagagag
     2461 tgtcgtattg aaagaagaag cagcgacata acattaccct tccccggcag cctcaggcct
     2521 gccgggttta atgcgcgttg ccgccaacac cgcatcgcgc ccaatgctta gtcagcctta
     2581 atcaactgcg ccacatcatt gctgttaatt tcccgctggt tgccttcctg atcggtataa
     2641 ctggtcattc ccgtctcttt atctaactgc ggcttaccct gagttacgat cgtttgccca
     2701 ttcttcgtcg tcatcacata gttggttgta caacccgcaa gcataaaaaa catcatgccc
     2761 aaacctgagc atataaataa ctttttcata ttttcctcgt gaatataatg agttaacgac
     2821 tgcaaaaagg tagtgtaatt ctcacagaat catcaggcta tcggcggggt ttaacgaggc
     2881 gtatcggtgc gtttaaagag atgactggag gggtttcccc ctccataccc tatttacaga
     2941 gcaatgcgaa taacatcatc cggctgcgtc gcttcttgtt cacgtgtcga tttctgcttc
     3001 acgctgacgt agagcgtttt accgtctgcc gatagcgcca ggctattcgg gtacgtcggc
     3061 gtatcgaacg ttttaacaac gttataggtc ttcgcatcga tcacgctgac ctgccctgcc
     3121 tgacggtgcg tcacatacgc ctcgttacgt gtcggattat acaggacggc caaagaggca
     3181 ggcgccgcga ttttggcaag aatattgcca ttacgggtat cgacaaccag aacctcagtt
     3241 gccttcgagt cggtgataaa cgcgcgatga cctgcggtat cgagactcag attaataaag
     3301 aagtgttctt taccgtcatc cagcaacttc ttacgactga gaattttatt gctggcggta
     3361 tcgatggtga taaattcgcc atccgcattg gtggtgtaca ggcgttgtgc tttactgtcg
     3421 agcgccagac ccgtactcat tttgccggta ttttcgatcg tcgttttcag tttgatggtt
     3481 tcgccatcca ctacccaaat agcactctct ttaccaacac cgctaatgta gatcgtgttg
     3541 gtcgccgcat cggcaaccag ctcacggggc tgtaacggac gaacctcttc agtacgtttg
     3601 cgcgcatcaa gtaccagacg accttttaca tcacccgttt tggcatcaat cgcggtaact
     3661 gcgctgttaa tggtattgcc aaaccacagc gtttgggtcg cggcattgat ggtggcgccg
     3721 aacggcttga gatcgttatg aatcgcttgc gtgatttcca gcgtcaccgg gtcgagacga
     3781 taaactacgc cgcctttatc cagtttacgg ctttgcgatg tagccagcca gagcgcgttt
     3841 tcttgctgac tccaggccat ctcataagcg cctttgccta ccgctttacg cagcatgtct
     3901 tccgccgcca gcgtgctaaa tgaggatgcg acgaggagcg aacctaacaa taaagaacca
     3961 cgcaggcgcg gcgaaaaaag atgacgtaag tgcatgacga ctcc
//
LOCUS       DAJVSD010000308         4000 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.308, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000308 DAJVSD010000000
VERSION     DAJVSD010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4000)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4000)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4000
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.308"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            270..582
                     /locus_tag="OQP62_004162"
                     /pseudo
     CDS             270..582
                     /locus_tag="OQP62_004162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558297.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(711..1739)
                     /locus_tag="OQP62_004163"
     CDS             complement(711..1739)
                     /locus_tag="OQP62_004163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HCS1723557.1"
                     /translation="MEDKYLTQSPAGEFIMFASGDGKVRVECRFESNTLWLSQGMICE
                     LYGKAKATISEHIKNIFADGELEENSVVRFYRTTASDGKNYQIQYFSLPLILAVGYRV
                     RSPRGTQFRQWATQTLQEYLIKGFVMDDERLKNPPVGSSAVPDYFDEMLERIRDIRAS
                     ERRVYLRVREIFALAADYQPSLKETTQFFQTIQNKLHFACTGYTAAELIHQRADACQP
                     HMGLTSYKGEEVRKCDVTVAKNYLTQDEVSELNRVVNMWLDFAEDQARRRQQVFLRDW
                     QDKLDQFLQFNDREVLQGAGKVSKKMADEKAQAEYSQFAEQQRRLKEAEGEKDIAALL
                     QWKTEPKK"
     gene            complement(1831..2661)
                     /locus_tag="OQP62_004164"
                     /pseudo
     CDS             complement(1831..2661)
                     /locus_tag="OQP62_004164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014227719.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4942 domain-containing protein"
     gene            complement(2810..3406)
                     /locus_tag="OQP62_004165"
     CDS             complement(2810..3406)
                     /locus_tag="OQP62_004165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000173549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02646 family protein"
                     /protein_id="HCS1723558.1"
                     /translation="MTLLLNEQYHLCCYSEIRADLRGLGYHIEHVENKSQQPGRTFDY
                     QNLAASALDSENGLPQLGINTFGGHVQGKNKSVDMAQFIHCHLPDCSRYFAYLSNGHV
                     VPSIDLTEQEAEYAQYTIDHLNLNSGFLQTERRNHWEELEQLFEEHIEKDWDLHQLLQ
                     LDLVPSPDHKLHEFFSITRQFFQQEAEQVLQSHAPALI"
BASE COUNT         1041 a          910 c          952 g         1097 t
ORIGIN      
        1 gaaatataat aatgggaggg gttaagaata aacaggacgt atgggagaac aagggtataa
       61 agatgaaatg cttgcagtat ctaatagata acaatgaaaa atcaggtaac tgagaaacta
      121 ttcagtgttt aggttgatgt gatattgagt cattcagccg ctacagcaca ttatcaggat
      181 aatttcgtct ggataaaacg gaggaatgaa tcgccacagg tttaacagac accgctgagt
      241 catttaagat gacttaaaga gagaagccca tgagcggtaa acgttatccc aaagcgttta
      301 aaattaaagc ggtaaaacag gttattgagc gcggccattc tgtttccagc gtcgcaacac
      361 gtcttgatat tactacccat agtctttacg cctggataaa gccgccacat tcacgacggc
      421 atcatgttga cctgaatctg acggggcata caggcagttc tggctggaat cgggctgtgt
      481 ttatggctat cgcaagatct gtctcgatct gcgggatatc aggaacaatg cggtgtaagc
      541 aaagtctggt ggttgatgca acgtgtgggg ataaaggctc gggcgatcac aggaatcgta
      601 tttgaatgtt aacttattga ttttatgttt atattttgta ttggataaat gagtaacccc
      661 cataagcacc cccaaatgat tttgcttgtg gggtttgggg acatcctgag ctacttttta
      721 ggctctgttt tccactgtaa caaagcggcg atatctttct caccttcggc ttcttttaaa
      781 cgccgttgtt gctcggcaaa ctggctatat tccgcctgcg ctttttcatc ggccattttc
      841 ttactgactt tacctgcccc ttgcaaaacc tcacggtcgt taaattgcag gaactgatcc
      901 agcttatcct gccagtcgcg taaaaagacc tgttgacgac gacgggcctg atcttcggcg
      961 aaatccagcc acatgttaac tacgcggtta agctcgctga cttcatcctg agtgagataa
     1021 ttttttgcca ccgtcacgtc acatttgcgc acctcttcac ctttatagct ggtcagcccc
     1081 atatgcggct ggcaggcgtc agcacgctga tgaatgagtt cagcggcggt atacccggta
     1141 caggcaaaat gtaacttgtt ctggatggtt tgaaaaaact gcgtggtttc tttgagggac
     1201 ggttgataat cggcggccag agcaaagatc tcgcgtaccc gcaaataaac ccgacgttcg
     1261 ctggcgcgga tatcgcggat acgctccagc atctcatcga aatagtcggg tacagccgat
     1321 gaacccacgg gcggattttt caggcgctca tcgtccatca caaaaccttt gatcaggtat
     1381 tcctggagcg tctgggttgc ccactggcgg aactgcgtgc cgcgcgggga gcgaacgcgg
     1441 tagccgacag cgagtatcaa cggcaaacta aagtattgaa tctgataatt tttcccatca
     1501 ctggcagttg ttcggtaaaa ccgaacaact gaattttctt caagctcgcc atctgcaaag
     1561 atgttcttta tatgctcact gatggtggct ttagctttac cgtatagttc gcagatcatt
     1621 ccctgagaga gccacagtgt attgctttca aagcggcatt caacacgcac tttcccgtca
     1681 ccgctggcaa acataatgaa ttcacctgcc ggggattggg ttaagtattt atcttccatg
     1741 tcgcctccac ttacatctga ctcgtgatgc tgtaatccgc ttagtatgcc agaaattcct
     1801 ggtgaagctc attacgcaga tagcgtttat tttggcgggt agcgcccccg gatagtgttt
     1861 catcacgata tcattcatct tctccaccag atccagacgc ttaaacgtga tatgcccact
     1921 gcctttctga aagtagtgca tagagaataa atcatcctca aaaacctgct gatgcgggtt
     1981 atcacgaatg aagtccatca gtcggatagt cacatcgtgt cggttatcgg gaatggtttt
     2041 accatccagc aggaacaaca tgcgctccag atccgcaatc tggtcacgcc gtcagcccca
     2101 attcaggctg tagccccatc ggtcgtgctt taccaggccg ttaacgatga tccgcttacc
     2161 gaagcagcag ggattattgg ttttatagtc ccagcttagc cctttaaata cattgataat
     2221 cccacgttcg aaaacatcct gtttattgtg gtggagttgt tcaaaggtgc tcaggatgtt
     2281 ggcttcgctg atggccggaa gatctcctcc ttcgagattt ttagcccact ggctgcgggc
     2341 ttcagcgtcc attaaggtca acatcccgga cttcagcatc agatcgcgcc aaatgctgcg
     2401 gtcaatatta cgggtgatca ccggcatcgc tttatcaacc ggttgcatca accagcagtc
     2461 aaaggaatgg cgctgtcgca tcgcccaatg ctccgctaca tcaccaccga tgctggaggt
     2521 aagccgcgag atgtcatcaa gcttatgaat caggatttct atcaggctca gcgcagcgtc
     2581 gcgccctgtg acgatgcatt caatactggt cgagcaaatt agctcattat ggtcagttaa
     2641 gacttcagct tctgtttgca tatttttggt ccatataaaa gcaaacgcgc ctgccgggag
     2701 tggcaggcgc attatgcggt gaaataaagg tgaataaata ttgagggtgt aaatcaggaa
     2761 ggcgactcgc aataaatcat gctgtcgccc tgaatcagga atagtggtgt taaattaatg
     2821 caggggcgtg gctctgtaat acctgttcag cttcttgctg gaaaaactgg cgtgtaatgc
     2881 tgaagaattc atgcagttta tgatctggcg aagggaccag atcaagctga agtaattggt
     2941 gcagatccca gtctttctca atatgttctt caaaaagctg ttccagctct tcccaatgat
     3001 tacgacgctc cgtttgaagg aatccgctgt tcaggttcag gtgatcaatg gtgtactgtg
     3061 cgtactcagc ttcctgctca gttaaatcta ttgaaggaac cacatgccca ttagataaat
     3121 aggcaaaata acgagaacag tcagggaggt ggcaatgaat aaactgtgcc atatccacag
     3181 atttattctt tccctgtaca tgaccaccga acgtgttgat gccaagctgg ggcaaaccat
     3241 tctcagagtc taacgcgctg gctgcgagat tttgataatc gaaggttcgc cctggctgct
     3301 ggcttttatt ttcgacgtgt tcaatgtgat agccgaggcc acgcaaatca gcacggattt
     3361 cgctgtaaca gcaaagatga tattgctcat tgagcagaag cgtcactaaa tctgctttgt
     3421 ctcgtctaaa gtttcgccag cgacgggtcg attgatccga atcttgtggt ggattttcat
     3481 ttgcagtgag taaggcatct gtccccggcg agttttgatc acatgcctca ttgtgccttc
     3541 cctttcagaa agttacggca tcgacaaacg tagcgcctgc gttaataaac gtaaggctat
     3601 agtgccttca agtagatgag taagctgcga cgttactgct cgtatgaaca ccatccaccc
     3661 ttatgatgtg agcccgtacc cccatgtgga tgttgaccct ttgggcaggc aagcgcaccg
     3721 gatgatgccg tgacggtaat aaaagcgata atcatcgctg taaataatct cttcatatat
     3781 aactcacatt aataaattgg aacatattac tacctactac agaatacgca tacttgatac
     3841 ggacttaggg gataatataa cgtgtacttt agtttaaatt ctatccttca tgtggcatag
     3901 gttatcagga taggttttcg ttatgaattt tatctgggat attgaagcaa catattgtgg
     3961 gggggatatg agttataaat atgttggtaa gcatggctgt
//
LOCUS       DAJVSD010000309         3987 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.309, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000309 DAJVSD010000000
VERSION     DAJVSD010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3987)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3987)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3987
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.309"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(3..2963)
                     /locus_tag="OQP62_004166"
     CDS             complement(3..2963)
                     /locus_tag="OQP62_004166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001751376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HCS1723559.1"
                     /translation="MKLHFESDLTYQQNAITSVCDLFEGQEKWESEMTVLAPAQGALS
                     FEGATGSMPVNPQIPEDDVLLKNLNNVQLKNQLPPSPVLDSHDFTVEMETGTGKTYVY
                     LRTMLELNKRYGMSKFIIVVPSVAIKEGVYKTLQITEEHFKSLFAGVPYEYYLYDSAK
                     PADVRNFATSSVMQIMVMTVGAINKKDVNKLYQSSEKTTVDDLDKPIDLIRATRPIII
                     VDEPQSVDGGLNGAGKTALDAMHPMFTLRYSATHVHKHHMVYRLDAIDAYNQKLVKQI
                     EVAGLEVQNASNSPYVKLVSINNKKNSISATVIVDIADKKGNVNRSEITVYDGMTLDD
                     ETGRDIYQGYRISEIRTGKEGYLTLETPSDTYYMKVGDVVGDIDPMLIQRHMIRRTIR
                     EHLDKELRLNTQQIKVLTLFFIDKVDLYRQTNEEGVREPGEYARIFEEEYLKAIKSPA
                     YKDLLPSHPEHAKDVHDGYFSIDKKGAWAETSESNNTGRENAERGYNLIMKNKEKLLS
                     FSNPVRFIFSHSALKEGWDNPNVFQICSLREMGSERERRQTLGRGLRLCVNQEGERVR
                     DDSINILTVVASENYEAYAERLQSEIESETGIRFGVIEKDAFAHLIFADSSQGLGISG
                     SHDIWSELQTEGYIEKSGKITKTLKKELFENTFVVSEKYASLQEQIETILRKSAGRLN
                     INNADERKTIKYRKEVLNSPEFEALWQRICQKTLYRLAFDEEELIKSCTKSLSEMQPV
                     AKAMVSFSKATIKQSQSGLDVKALSNGTTSSVVDVAEQPLPDILGVLQEKTGLTRRSL
                     STILKESGRLADFAKNPQQFISEAIGRINYCKRLSIVDGIKYYPLKGEVYAQSLFMDK
                     ELTGYARNLFETSSKSVYEYVPKDSEVESRFAQELEEQDEVKLYVKLPGWFKIPTPLG
                     TYNPDWALVIEDNGEEHIYFVVETKSKHIGLGHEEDAKIACGTAHFSALKAEKINAAK
                     YVRATAITEIMSSL"
     gene            complement(2973..>3987)
                     /locus_tag="OQP62_004167"
     CDS             complement(2973..>3987)
                     /locus_tag="OQP62_004167"
                     /inference="COORDINATES: protein motif:HMM:NF013704.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004151472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HCS1723560.1"
                     /translation="LIEIKPIRDDGTDGRWRWGFDTAKTKIESVYAKFMPTKKMWGIM
                     EKDYLSKRDAVKATSSWTHRDVNSERGSEQFIEIGFDKEVFSRPKPLGTLLRIIEIAT
                     YPNEECIALDFFGGSGTFGHAVFTANAIKNRKIKFVIAQLPELVDENTKEQAIAAAFL
                     KKHGMSLKISEITKERLRRAGKKVREDNPDWNGDVGFRVFKLDTSNIRPWEATAETLS
                     EQIDAYVSPILEGRNEEDLLTELMLKRGIDLSVNIETRQFDGLTVSCVDGGKLFTCFA
                     KQIPASSVEELTKGIIDWYKSLKAGKDTVCYFLDDAFENNVAKTNLCAILEQHGLTNL
                     HSL"
BASE COUNT         1053 a          869 c          764 g         1301 t
ORIGIN      
        1 atttaaaggc tgctcattat ttctgtaatg gctgtggctc gaacatattt tgctgcattg
       61 attttttctg cttttaaagc actaaaatgc gcagttccac aggctatctt cgcatcttct
      121 tcatgaccaa gaccaatgtg tttacttttt gtctctacaa caaagtaaat atgttcttca
      181 ccattgtctt caataactaa cgcccagtca ggattgtagg ttcccagtgg cgtcgggatt
      241 ttaaaccatc ccggcagctt cacataaagc ttaacttcat cctgttcttc gagttcctga
      301 gcgaaacggc tttcgacttc agaatcttta ggaacgtatt cgtaaactga cttagacgag
      361 gtttcaaaaa gattacgggc atatcctgtt agctctttat ccataaagag actttgcgca
      421 tacacctctc cttttagtgg ataatattta ataccatcaa caattgacag gcgtttgcag
      481 tagttgattc ggcctatagc ttcactgata aactgctgtg gatttttagc aaaatcagcg
      541 agtcttccac tctctttcag gatggtgctt aaactgcgtc ttgtcagtcc ggttttttcc
      601 tgtagaacac caagaatatc tggcaatggc tgctctgcaa catcaactac agagcttgtt
      661 gttccattag acagagcttt aacatcaagg ccagattgac tttgtttgat tgttgctttg
      721 ctgaaactga ccattgcttt tgctacaggc tgcatttcag aaagtgattt cgtacaggat
      781 ttgatcaatt cttcttcatc aaatgctagc cgatacagcg ttttttgaca aatgcgctgc
      841 cataacgctt cgaattccgg gctgtttaag acttctttcc ggtatttgat tgttttacgt
      901 tcatcagcat tgtttatatt gagtcgccct gctgatttac gcaggatagt ttcaatttgt
      961 tcctgtagtg aggcatactt ctcactaaca acaaaagtgt tttcgaataa ttcttttttc
     1021 agggttttgg taatttttcc cgatttttca atataacctt cagtctgaag ttcagaccag
     1081 atatcatgtg aaccggaaat acctaaacct tgtgaggaat cagcgaagat aagatgggcg
     1141 aacgcatctt tttcaatcac accaaaacgt atgcctgttt cgctctcaat ttcagactgt
     1201 aatcgttcag cgtaggcttc ataattttca ctggcaacga ctgtcagaat gttaatgctg
     1261 tcatcacgaa cacgttcacc ctcttggtta acacacaggc gaagaccacg gcctaatgtt
     1321 tgacgacgtt ctcgttcact tcccatctct cggaggctac agatctggaa tacattgggg
     1381 ttatcccagc cttctttcaa agcagagtgc gaaaaaataa acctcactgg attcgagaaa
     1441 ctcaaaagct tctctttatt tttcataatg agattataac cacgctcagc attttcacgg
     1501 cctgtattat tgctttcgct tgtttcagcc catgcacctt ttttatcaat ggagaaataa
     1561 ccatcatgaa catctttggc atgttctgga tgagaaggaa gtaaatcttt ataggcaggg
     1621 cttttgattg ctttaagata ttcttcttca aagatacggg catattcacc cggttcacgt
     1681 actccttctt cattggtctg acgatataaa tcaaccttat caatgaaaaa cagggtaaga
     1741 accttgattt gctgagtatt caggcgaagt tctttatcca gatgttcacg gattgtacgt
     1801 ctgatcatat gacgctggat gagcataggg tcaatatccc ccacgacatc accgactttc
     1861 atatagtagg tatcagaagg tgtttccagt gtaagataac cctctttgcc agttcggatc
     1921 tcgcttatcc ggtaaccctg ataaatatca cgtcctgttt cgtcatcgag tgtcataccg
     1981 tcatatacgg taatctctga acgatttacg ttcccttttt tatcggctat atcaacaata
     2041 acagtcgcac taatgctatt cttcttattg ttaatactga ccagttttac ataggggcta
     2101 ttacttgcat tttggacttc aagcccggca acctcgatct gtttgaccag tttttggttg
     2161 taagcatcaa tggcgtcaag gcggtacacc atatgatgtt tatgaacatg tgttgctgaa
     2221 tagcgtaagg tgaacatggg gtgcatagca tcaagtgcgg ttttacccgc accgttcaag
     2281 ccaccatcaa cactttgcgg ttcatcgaca ataataattg gacgtgtagc acggattaaa
     2341 tcaatgggct tatccagatc gtccacagtt gttttttcac tggactgata gagcttgtta
     2401 acatcttttt tgttaatcgc acccacagtc attaccatga tctgcataac agaactggtt
     2461 gcaaaatttc gaacatccgc aggttttgcc gaatcataca gatagtattc gtatggaact
     2521 cccgcaaaca ggcttttaaa atgttcttca gttatttgta gtgttttata aacgccttcc
     2581 ttgatagcaa ctgaaggaac cacaataata aatttactca tgccatagcg tttattcagc
     2641 tccagcatgg tgcgaagata aacatacgtt ttacctgtcc ctgtttccat ttcgacagta
     2701 aaatcatggc tgtcgagcac aggtgaaggt ggaagctggt tttttaactg aacattgttc
     2761 agatttttaa gcagtacatc atcttcgggt atttgtgggt taacaggcat tgaacctgtt
     2821 gcgccttcaa atgagagtgc accctgagct ggggccagca cagtcatttc gctttcccat
     2881 ttctcttgcc cttcaaacaa atcacagacc gatgttatgg cgttttgctg ataggtaagg
     2941 tcagattcaa aatgtagttt catctcattc ccttacaggc tgtgcaggtt agtcaggcca
     3001 tgttgttcca gaatggcgca aagatttgtt ttagcaacgt tattttcaaa tgcgtcatca
     3061 aggaaatagc agaccgtatc tttgccagct tttaaactct tataccagtc gatgatcccc
     3121 ttggtcagtt cttctactga agatgcaggg atttgtttag caaagcaggt aaacaatttg
     3181 ccaccgtcaa cacaagaaac ggttaatcca tcaaactgac gggtttcaat gtttacactc
     3241 aggtcaatgc cacgtttgag catcaactct gtgagcagat cttcttcatt acggccttca
     3301 aggattgggc ttacataggc atcaatctgt tctgaaaggg tttctgctgt ggcttcccac
     3361 ggacggatat tagatgtatc gagtttgaaa acacgaaaac caacatcacc attccagtca
     3421 ggattatctt cacgaacctt tttacctgca cggcgtaggc gctcttttgt gatttctgat
     3481 atttttaaag acattccatg cttcttcaaa aaagctgctg caatggcttg ttccttagtg
     3541 ttttcgtcaa ctaattctgg tagttgcgca atcacaaatt tgattttcct attcttaatt
     3601 gcattggctg tgaaaacagc gtgaccaaaa gttcctgaac cgccaaaaaa atcaagtgct
     3661 atgcattcct cattagggta agtagctatt tctattatgc gaagaagagt gcctaaaggt
     3721 tttggtctag aaaaaacttc tttgtcgaat ccaatttcaa taaattgttc acttcctctt
     3781 tcactattta cgtctctatg tgtccatgag gaggtggctt ttaccgcatc ccttttggat
     3841 agatagtctt tctccatgat gccccacatt tttttagtag gcataaattt agcgtataca
     3901 ctctcgattt ttgtttttgc tgtatcaaat ccccatctcc atcggccatc cgtaccatca
     3961 tctcgaatag gttttatttc gataaga
//
LOCUS       DAJVSD010000310         3957 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.310, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000310 DAJVSD010000000
VERSION     DAJVSD010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3957)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3957)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3957
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.310"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            169..855
                     /gene="istB"
                     /locus_tag="OQP62_004168"
                     /pseudo
     CDS             169..855
                     /gene="istB"
                     /locus_tag="OQP62_004168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000544830.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS21-like element helper ATPase IstB"
     gene            complement(920..1081)
                     /locus_tag="OQP62_004169"
                     /pseudo
     CDS             complement(920..1081)
                     /locus_tag="OQP62_004169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013365374.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(1168..1281)
                     /locus_tag="OQP62_004170"
     CDS             complement(1168..1281)
                     /locus_tag="OQP62_004170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoplasmic protein"
                     /protein_id="HCS1723561.1"
                     /translation="MMPTDGNDNTRKQDGAVFGQPEVKPMPETLQCTEKWR"
     gene            complement(1401..2348)
                     /locus_tag="OQP62_004171"
     CDS             complement(1401..2348)
                     /locus_tag="OQP62_004171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1723562.1"
                     /translation="MMELINNRGMRDWMIFIKVAEVGNLSRAARELDISISAVSKSLS
                     RLENSIEVTLLRRDSHHLELTGAGQTAYASMKRITSSFQSLLDELRNPDKIIRGSIKF
                     SAPAIVCEFLANKWIWEFTASYPDTKIYLDSRERSDFFSKSLEFDELVFKSGIIESED
                     LVYRKISPLKLVLCASPKYIRKYGRISHPGDLENHIIVGLHNHGLSGPLTLFRQEESY
                     TISGAVNVHLSSNNLLSVLNLVLEGKGINLMTPAWLATKYLKNNELEIILPEWRVPDL
                     PIYLVWRHRQYYSPLFQRFLSFIEDKWNNRPQIDFLNDD"
     gene            complement(2840..3080)
                     /locus_tag="OQP62_004172"
                     /pseudo
     CDS             complement(2840..3080)
                     /locus_tag="OQP62_004172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309415.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PerC family transcriptional regulator"
     gene            complement(3163..>3957)
                     /locus_tag="OQP62_004173"
     CDS             complement(3163..>3957)
                     /locus_tag="OQP62_004173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HCS1723563.1"
                     /translation="LMYHHVSDKPGQITLSPRTFRAQMKWLAESGWKTVTAAAVEAFY
                     HGARLPRKSVMLTFDGGWLDNWLQVFPVLQEFNLHAHLFLVTSLISDGPVRIPAGEPV
                     YSHDECQMLVKQGRVDEVMLRWSEVREMHLSGLVEFHSHTHTHRRWDQKPVSRNPSDL
                     LRVDILLSRKRMREMLGYCSQHLCWPEGWYCSDYIHVAEELGFTYLYTTERRMNNPVI
                     GSQRIGRINTKERKNVGWLKRRLFYHTTPGFSSLLARHKGARRIAD"
BASE COUNT         1121 a          996 c          874 g          966 t
ORIGIN      
        1 caattcacct tttaaaacat aatgttataa aaaataccat tcaaattgat gccagtccct
       61 tacctgtcaa tgttgtttac ggttcctttc ccccttttgt gcgagtaagc aacatgaata
      121 tacaagtctt aacgaccaat gcctctgtca gcccaaaata agtcgacatt cctgtgcatg
      181 gcgctgcagc aggaatagaa cggcagacat cagcgcggaa tggaatcccg gctgaaacag
      241 gctcgtctgc catgagtcaa aacgctggag cagttcgact tcagcttcca gccaggcatc
      301 gatcgtaagg tcgtccggga gttggccggt ctggcgttcg tggagcgctg cgagaatgtg
      361 atcctgctgg ggcccccgga gtggagaaaa cccacctggc cgctgccccc ggtgtgaaag
      421 cggcagatgt gggccatcgg gtgttgttca tgccgcagga caggttggta gacgctgatg
      481 aaagcgaagc tggaaaaccg cctggagcgc cagctacaac aactgagcta tgcgcggggg
      541 ctgatcctgg acgaaatagg ttacctgcca atgaccagtg aggaagccag tctgttcttc
      601 cgactgctga accgacggta tgaaaaagcg agcattatcc tgacgtcaaa caaaggcttc
      661 gcagactggg gagagatgtt cggtgataac gtgctggcaa cagcgatcct ggatcggcta
      721 ctgcatcact caaccacact gaatatcaaa ggagaaagtt accaactgaa ggaaaaacgc
      781 aaagtcgggg cgctgaccaa aagcgcaacg ccaatcagtg aagatgaaat ggcggaaagc
      841 ggacagcaga agtgatcaaa cagcggatat taaaaatagc gaaaaacgac cataaatcct
      901 ggcgttgaca tcctcaagat ttaatatcag aagcttccat gccgccgtat ccagacttcc
      961 agttgtccct ggtggcttca gaaataccgg cctcccggta gacatcttta acagtccgtc
     1021 cggattcaac tgatctaatc acagcgatga tctggtgcgc agtaatacgg gctttacgca
     1081 cagcgatctc ctgcgttggc agattgatta tgccggatga tctctaaatg tgaatggctc
     1141 gattatgcgg gatacttaca gtgcaaccta gcgccatttt tcagtacact gcaacgtttc
     1201 tggcatgggc ttaacttccg gctgcccaaa aacagccccg tcctgtttcc gggtattatc
     1261 atttccgtca gtcggcatca tgttttgtat tgggcatcgt caaaagacga ctggccggcc
     1321 agtcgcatat ctcgatgcct caattcagtc atcatcatgt gggtttaagt caggaacgtg
     1381 tcaaaaccat tccaaacgag ttaatcatca ttcagaaaat caatttgtgg gcgattattc
     1441 catttatctt caataaaaga cagaaagcgt tgaaataaag gagaataata ctgacgatga
     1501 cgccatacaa gataaatggg gagatctgga actctccatt caggaagtat aatttcaagt
     1561 tcattatttt ttaagtattt agtggcaagc caggccggag tcatgaggtt gatacccttc
     1621 ccttctaaaa ccaaattaag aacactcaaa agattattgg aagataaatg aacattaaca
     1681 gcgccactaa tagtgtatga ttcctcttga cggaaaagag taagaggtcc ggaaagacca
     1741 tggttgtgaa gacccacaat aatgtgattt tccaaatcgc caggatgtga gatcctgcca
     1801 tattttctga tatatttcgg acttgcacaa agaaccaact ttaaagggct tatctttcga
     1861 tacacgagat cctcactttc gattatgcca cttttaaaaa ccagctcatc aaactccagg
     1921 gatttactaa aaaaatcgct acgctctcgt gaatccaggt agatttttgt atccggatag
     1981 ctagctgtaa attcccatat ccacttattg gcaagaaact cacagacaat agccggagcc
     2041 gaaaatttta tactccctct gataatttta tccggatttc gcaattcatc cagcaaggac
     2101 tgaaaggaag atgttatcct tttcatgctt gcataggctg tctgaccagc tccagtcagc
     2161 tctaagtgat gtgaatcgcg ccgaagtaaa gtaacctcaa tagaattctc aaggcgacta
     2221 agcgatttac tgacagcaga aatgctaata tctaattccc gcgcagcccg ggaaagattc
     2281 cctacttccg ccactttaat aaatatcatc caatctcgca taccacgatt attgatcagt
     2341 tccatcatta tcttccgttg ataaaagaaa ttcttatatt aaaggagcta tcaacgactt
     2401 actgatgcgt cattgtgtgc ctcaatgtcc ttgatatcat cataataaaa aacctattgg
     2461 ctgcaaaata gcatctgaat cgatcatgat tttgcatcca tctccggtta ctaattgaac
     2521 ctgtttacca ctcagtgtaa ataccctatc tcagaagcga tcgtcaaggt tgtcgccgaa
     2581 ccagatctca ataataaagt ggttcattgt catgcgcccg ttctgcaaag gcattctcct
     2641 tttctgtgac gcagtctgga gcgcattaat tgtatcgttc acctaacaaa gtatcccgtg
     2701 gaaacaagca aaacatcgcc agattattct tacttgagtc ccccacccgg ctcgacatta
     2761 tttgtgaaag cggaggaaac agaacagacg gtttaaataa gacgcttact caaaacataa
     2821 acctatgtgc aggctcctct catttcgtca cgtcgctgat atccagcttt actggtgcca
     2881 ggggaagata tctgcgcaag gcaataattc cggcgcaaca acaaccactc ccgctgggcc
     2941 tctgtacatt caaaatcgcc catgaccaaa agccagcggg tagaagccct gcgccagtga
     3001 cctgctgcct ccagattctg cgcaaccggg tctatcacgg cttccggtgt tatcttattt
     3061 ctgctcaaaa tcagcaccat catttgggat atagcctaca acccctgccc gccgatgatg
     3121 ggggaggatt cggtatgcag cactttcatc ctggtctccg gctcagtcag ctatccgacg
     3181 tgccccctta tgccgggcca gcagcgaaga aaatccgggc gtggtgtgat aaaacaggcg
     3241 acgtttcagc cagcccacat tctttcgctc ctttgtgttg atacgaccaa tacgctgtga
     3301 accgatgact ggattgttca tacgcctttc tgtggtatac aggtatgtga accccagctc
     3361 ttcagccaca tgaatataat cagaacaata ccagccctca ggccagcaca gatgctgact
     3421 gcagtaaccc agcatctccc tcatccgctt acgactaaga agaatatcga cacgaagcaa
     3481 atccgacgga ttacgggaca caggcttctg gtcccagcgt cggtgggtgt gcgtgtgcga
     3541 atgaaactca acaaggccac tgaggtgcat ctcccggacc tctgaccagc gcagcatgac
     3601 ctcatcaacc cggccttgtt taaccagcat ctgacactca tcatgagagt acaccggttc
     3661 gcctgcagga atacgaaccg gtccgtcact gatcaaactg gtcacaagaa agagatgcgc
     3721 atgcagatta aactcctgca gcaccggaaa aacctgcaac cagttatcca gccagccgcc
     3781 atcaaaagtc agcatgacgc ttttacgagg caatcttgca ccatgataaa aagcttccac
     3841 cgctgcagca gtaacggttt tccagccaga ttcagccagc catttcatct gcgcccggaa
     3901 cgtacgggga gataaggtta tctgtccggg tttatcactg acatggtgat acattaa
//
LOCUS       DAJVSD010000311         3953 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.311, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000311 DAJVSD010000000
VERSION     DAJVSD010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3953)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3953)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3953
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.311"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(268..738)
                     /locus_tag="OQP62_004174"
     CDS             complement(268..738)
                     /locus_tag="OQP62_004174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilin structural protein SafD"
                     /protein_id="HCS1723564.1"
                     /translation="MWMKIQRVKTVIYSVSLLVAASSLVPIANAAEKLQTTLRVGTYF
                     RAGHVPDGMVLAQGWVTYHGSHSGFRVWSDEQKAGNTPTVLLLSGQQDPRHHIQVRLE
                     GEGWQPDTVSGRGAILRTAADNASFSVVVDGNQEVPADTWTLDFKACALAQEDT"
     gene            complement(760..3270)
                     /locus_tag="OQP62_004175"
     CDS             complement(760..3270)
                     /locus_tag="OQP62_004175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
                     /protein_id="HCS1723565.1"
                     /translation="MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFN
                     QGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDY
                     PQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDG
                     IPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGK
                     WQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPV
                     VRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMF
                     VVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQS
                     ATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNL
                     FLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQSWGRHLGNLS
                     LIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGGHRKENITSLWFS
                     MPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGN
                     NSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEA
                     PGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQTDVRVVPT
                     EGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQVYLTGL
                     ADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR"
     gene            complement(3294..>3953)
                     /gene="papD"
                     /locus_tag="OQP62_004176"
     CDS             complement(3294..>3953)
                     /gene="papD"
                     /locus_tag="OQP62_004176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017465813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pili assembly chaperone PapD"
                     /protein_id="HCS1723566.1"
                     /translation="QKLSLNTKSFSVKLGATRVIYHAGTVGATLSVSNPQNYPILVQS
                     SVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGGDMPTDRETLQWVCVKAVPPEN
                     EPSDTQAKGATLDLNLSINVCDKLIFRPDAVKGTPEDVAGNLRWVEAGNKLKVENPTP
                     FYMNLASVTVGGKPITGLEYIPPFADKTLNMPGSAHGDVEWRVITDFGGESHPFHYVL
                     K"
BASE COUNT          925 a         1177 c          882 g          969 t
ORIGIN      
        1 ccgctcacaa aagagtgaat caaacaaatc cacaaaacag aaaataataa aggcatcagt
       61 gtccgttaaa ttattttacg aaacataata ttcctctccc tacaaaaaaa gatgaatttc
      121 agattttaaa atcaatcagc aattgatttt tctgcaatga agattgctaa ccatatttgc
      181 cttgagtaaa ttttcaatac atcctcgaac ctgatataca gtattcgcct tattcactga
      241 tacaggaagt atgagtggaa cagacggcta cgtatcctcc tgcgccaatg cacaggcctt
      301 aaaatccagc gtccaggtgt ccgcaggcac ttcctgattg ccatcaacga ccacactgaa
      361 actggcgtta tctgcagcgg ttcttaaaat ggcgccacga ccactcaccg tatctggttg
      421 ccacccctcg ccctccaggc gaacctgaat gtgatggcga ggatcctgtt gcccgctcag
      481 cagcaatacg gtaggcgtgt tacccgcctt ttgctcatcg ctccataccc gaaacccgct
      541 gtgactgccg tgataagtca cccagccttg cgcaagcacc atcccatctg gcacatgccc
      601 ggcccgaaag taagtaccta cacgtagcgt tgtctgaagt ttttctgcgg cgttcgctat
      661 cggcaccaag ctactggcag cgaccagtaa gcttacgcta tagataaccg ttttcactcg
      721 ctgtattttc atccacatta ttctctcctt cagaatcggc tatctgcaga gaccgctcat
      781 ttgatacaag cccgcgattc ccttgtgggc aggtaggtgg tagttaaccc gacattgctg
      841 tgctccccat ttcaccgtca gttcgccctt atccgccaga ccagtgagat aaacctggct
      901 atcagtatcc accagatcag cgctgccatc ctgcccattg actataacct gcgccccgaa
      961 aggaatggcg ctaccatctt cccgtttcag cgtcatcagt gccctggccc cgatgcgagt
     1021 gtgaaacttc gcttccacca ccgccccttc ggttggcacc acgcgcacat cggtttgtgt
     1081 gacctctgcg tcatccggta gttgcgacgg atcgaggctg actgtattct cctgatagac
     1141 gctcaggttg cccactgtgg tgtcgccacg aaaatccgtc ttaacgccag gccaggggcc
     1201 aactggcacc cccgaggccc ctggcgcttc aaccagcgcc actgagcctt gcaaaggttg
     1261 ccccagcgtc acaccatgat ggtggataac tatacctccc gcgatattga ctcccatctg
     1321 gcgcatcgcc cggctgtagc tatagtcacc acctaacagg ccgtaagccc cattccatgc
     1381 caagtgcaat gcgctgttat taccaccacc tggcggggca tcggcacggt aactctgacg
     1441 cacctcccaa tccagttgct gactgaatgc ctctccgttg acccccactt gttgcgtctg
     1501 accaccgtgt gatggtgaag tcatctgcca actagcactt acattattcc ccgtccagcg
     1561 gcttaatggc atactgaacc acaggctggt tatgttctct ttacggtgcc cgccattgcg
     1621 ccacagcgtt ctgttttgat tccagttcaa tgacagcgag ccccctccga tagaggttcc
     1681 ccaactcagt ccgtagctgt catcatgacc ggggcgatta cgccagtcgg tacgggaacc
     1741 gattaaactc agattgccca aatgcctccc ccatgactga ctcaacatca gggtggtacg
     1801 tgagctcggc tgcaaatttt cccgccacga ccatagacgg ttgccattat gtcgataact
     1861 gtcgagcaca tcggataggg tgttatagcc ctgcgaggca tattgccatc tcgtcagaaa
     1921 caaatttgtc cccgtcgcag tcagctggtt gctgtaacgc agtcgccagg aggctccttg
     1981 ctgtaccgct tccccctgac gctgactgtg tgtgtcgctt ccatcgacag ataaactccc
     2041 ccaccgcccg agagatcctc ccaaaccaag cgatgcagct tgatagtgcg ttgcactctg
     2101 tataccgcca tatgcagtga gattccacgg cagaccatac atcaacgtag cctgcgcgat
     2161 ctgcgcctta tccgttgcag agtctgacga tcggtatcgg cccgccaaca ggctgtactt
     2221 caaatatccc tggtgcagtg ctatcgccgg ggtctgatac ggcaccacaa acatttgtgt
     2281 actgccatcg gcctcccaca cggtgacatg cagatcacca ctactgtctg ttaccgacag
     2341 atcccgcagt gcaaacggtc cgggcgccac ggtggtgttg taaatggtgt aaccattctg
     2401 tttgacctcc acccgagcct gcgtgcgggc aatcccacgc actaccggag caaactgccg
     2461 ctcactgtag ggcaccatgt tgtcatccga tgccaacatc acaccggtaa atggcacact
     2521 atcaaatatc tccccctgcg aagtcttttg ccccagagtc agacgacttt ttagtgagta
     2581 cagtccacgc tcagcatagg tatatgctgc ctgccacttc cccgacagtt gactactccg
     2641 ctgccagctg gtcgcattgc ggacacgcca cgcacctata ttgattcccg gttgcagttg
     2701 tacccaggaa gagttgtcac gccccaccat atccattttg taatccgtct gcgttgtcct
     2761 cgcactgtag ttcatcagaa acgccggaat accatcatcc caaagatctt ctggagcgat
     2821 ccccttaaat tccggacgca acgccaactg cggaatactc agttgcagtt gctgattatt
     2881 gatatccagt accgctttag cctgtggaat ggcggtcaga tccgcacact catctggggt
     2941 ctttgctgct ttccacaact gagggtaatc ttccgttttt acgccgtagc gtgaaagctg
     3001 actgaccgtc aaacaagaag ccagaaaagg cgttccttgc ccatcctttt ctaatttgaa
     3061 caccacatca cgggtgtcga cacgtttacc attcaccatt acgtccactc gataagtccc
     3121 tggctgttgt accccctggt taaagagcga catatcaacc cctttcgctg catcgcccaa
     3181 cattgatgca tcgaatgtgt aagtgtgcgc atttgcgcag tgaaccactc ccgcgataaa
     3241 cagtagcaag gcaggttgtt tgaacttcat attctgccgc taagcccctg gatttattta
     3301 aggacgtagt ggaacggatg actttcacca ccaaagtcag taataactct ccactcgaca
     3361 tcaccatggg cactacctgg catatttagt gttttgtcag caaaaggggg gatatactca
     3421 agccctgtaa tgggctttcc ccctactgtg acggaggcta aattcatgta aaacggggtg
     3481 gggttctcca ccttaagttt gttgcccgcc tccacccatc ttaaatttcc tgcaacatct
     3541 tccggcgtcc ccttcacggc atccgggcgg aaaatcagct tatcacagac gttgatggac
     3601 aaattgaggt caagggtcgc gcccttagcc tgtgtatccg acggttcatt ttcgggtggt
     3661 accgccttta cacagaccca ctgtaaagtc tcacgatccg ttggcatgtc accaccagta
     3721 cggacaatac gcagttgact ctgctggttc gcttctaaac gaaatagagg cggcatcacc
     3781 aaaaaaggag caggcgaact tttgtctgct gctttgactg aagactgaac caaaataggg
     3841 taattctgcg ggttgctcac cgagagcgtg gctccaactg taccagcgtg ataaatcacc
     3901 cgtgtagccc ccagcttcac gctgaatgat ttagtgttta aacttaattt ctg
//
LOCUS       DAJVSD010000312         3943 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.312, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000312 DAJVSD010000000
VERSION     DAJVSD010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3943
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.312"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..90
                     /locus_tag="OQP62_004177"
     CDS             <1..90
                     /locus_tag="OQP62_004177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_448342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723567.1"
                     /translation="NVALAHCRNAINRVKLKHNLIFLQSRSEL"
     gene            87..482
                     /gene="uspC"
                     /locus_tag="OQP62_004178"
     CDS             87..482
                     /gene="uspC"
                     /locus_tag="OQP62_004178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001766287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspC"
                     /protein_id="HCS1723568.1"
                     /translation="MSYTHILVAVAVTPESHQLLAKAVSIARPVQAKVSLITLASDPE
                     LYNQFAAPMMEDLRAVMHEETENFLKMLGEKADYPIEQTFIASGELSQHILAVCRKHH
                     VDLVICGNHNHSFFSRASCSAKVSSAPAR"
     gene            complement(532..1953)
                     /gene="otsA"
                     /locus_tag="OQP62_004179"
     CDS             complement(532..1953)
                     /gene="otsA"
                     /locus_tag="OQP62_004179"
                     /EC_number="2.4.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalose-phosphate synthase"
                     /protein_id="HCS1723569.1"
                     /translation="MSRLVVVSNRIAPPDNKGGAGGLAVGVLGALKAAGGLWFGWSGE
                     TGNEDEPLKKVTKGNITWASFNLSEQDYEDYYCQFSNAVLWPAFHYRLDLVQFQRPAW
                     EGYMRVNALLADKLLPLIKENDIIWVHDYHLLPFASELRKRGVNNRIGFFLHIPFPTP
                     EIFNALPPHDELLEQLCDFDLLGFQTENDRLAFLDSLSSQTRVTTRSGKQHIAWGKDF
                     QTEVYPIGIEPDEIALQAAGPLPPKLAQLKAELKNVKNIFSVERLDYSKGLPERFLAY
                     EALLENYPQHRGKIRYTQIAPTSRGEVQAYQDIRHQLETEAGRINGKYGQLGWTPLYY
                     LNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEFVAAQDPANPGVLVLSQFAGAAN
                     ELTSALIVNPYDRDDVAAALNRALTMPLAERISRHAEMLDVIVKNDINRWQERFIHDL
                     KEVTPRSPERQQQNNVATFPKLA"
     gene            complement(1928..2731)
                     /gene="otsB"
                     /locus_tag="OQP62_004180"
     CDS             complement(1928..2731)
                     /gene="otsB"
                     /locus_tag="OQP62_004180"
                     /EC_number="3.1.3.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-phosphatase"
                     /protein_id="HCS1723570.1"
                     /translation="MAEPLTVSPELTANYAYFFDLDGTLAEIKPHPDQVVVPHKILQL
                     LDRLAAHNAGALALISGRSMTELDALAKPFRFPLAGVHGAERRDISGKTHIVRLPEAV
                     VREVEALLRSTLAALPGTELETKGMAFALHYRQAPEHEAALLALAQHVTQHWPQLALQ
                     PGKCVVEIKPKGTNKGEAIAAFMQEAPFTGRIPVFVGDDLTDEAGFGVVNHAGGISVK
                     VGVGATQAAWRLESVPDVWRWLEQINYPQQEQQVMNNRRDGYESFSRSI"
     gene            complement(2954..3130)
                     /gene="araH"
                     /locus_tag="OQP62_004181"
                     /pseudo
     CDS             complement(2954..3130)
                     /gene="araH"
                     /locus_tag="OQP62_004181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707790.1"
                     /note="Part of the ABC transporter complex AraFGH involved
                     in the high affinity transport of arabinose; incomplete;
                     partial in the middle of a contig; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose ABC transporter permease AraH"
     gene            complement(3365..3922)
                     /locus_tag="OQP62_004182"
     CDS             complement(3365..3922)
                     /locus_tag="OQP62_004182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HCS1723571.1"
                     /translation="MKKVAVLLAPGFEEAEAIVTLDILRRLHIDVETLACAESRAVVS
                     YHDIPMVADSTLSERQQALFDAVVLPGGPQGSANLAANPAVIAFVARHDAAGKLICPI
                     CSAAARVLGAHGLLKGRRYVCSGDLWKAVPEGVYVDAPVVEDGNLISGKGLGHVFDFA
                     LTLSARLLGDDALVREQAEHIYYPW"
BASE COUNT          981 a         1105 c          930 g          927 t
ORIGIN      
        1 aatgtggcat tagcgcattg cagaaatgcg ataaacagag taaagctaaa gcacaatctc
       61 atattcttgc aatcaaggag cgagttatga gctacaccca tattcttgtc gccgttgccg
      121 tcaccccgga aagtcaccag ctactggcta aagcggtctc tatcgcccgc cctgttcagg
      181 cgaaagtaag cctgattact ctcgcttccg atcctgaact gtataaccag ttcgccgcgc
      241 ccatgatgga ggatttacgc gcggttatgc atgaagagac cgagaatttt cttaaaatgc
      301 tgggggaaaa ggcggattat ccgattgaac aaactttcat cgcatcaggt gagttaagcc
      361 agcatatttt ggctgtgtgc cgcaaacacc atgttgatct ggtcatttgc ggcaaccata
      421 accacagttt cttttcgcgc gcgtcctgct cggcaaaagt gtcgtcagcg ccagccaggt
      481 agatgtgttg ctggtgccgt tagcgggcga ctagtcgccg ctcgcgatat ctcaggccag
      541 cttagggaac gtcgccacgt tgttctgctg ctgacgctca gggctacgcg gcgtgacctc
      601 ctttaggtca tgaataaaac gctcctgcca gcggttaatg tcatttttaa cgatcacgtc
      661 cagcatttcc gcatgacgcg aaatacgctc ggcaaggggc atcgttaacg cacgattgag
      721 cgccgccgcc acgtcatccc gatcgtaagg attgacgatt aacgccgacg tcagttcatt
      781 cgccgcgccg gcaaactgtg acagtaccag tacgccagga ttagcggggt cctgcgcggc
      841 gacaaactct ttcgccacca ggttcatccc gtcacgcaac ggggtgacga gcccgacgtc
      901 tgaataacgg aatatcttca ttaacagttt acggtcgaaa tgctgattca gataatagag
      961 cggcgtccag cccaattgtc catatttccc attaatccgg cctgcttctg tctcaagctg
     1021 gtggcgaata tcctgatatg cctgtacttc gccgcgtgac gtaggcgcaa tttgggtata
     1081 acgaattttt ccccgatgct gcggatagtt ttccagtagc gcttcatacg ccagaaaacg
     1141 ttccggcagc cctttcgaat aatccagccg ctcaacggaa aaaatattct tcacattttt
     1201 cagttccgcc ttgagctgcg ccagttttgg cggcaacggc ccggcagcct gcagagcaat
     1261 ctcatcgggc tcaataccga taggatacac ttctgtctgg aagtctttac cccacgcgat
     1321 atgctgcttg ccgctgcgag tcgtgactcg cgtttgactc gaaaggctat ccagaaaagc
     1381 caggcgatca ttttcggtct ggaacccgag cagatcaaag tcacacaact gctccagcag
     1441 ttcatcatgt ggcggtaaag cgttaaaaat ctccggggtc gggaatggaa tatgcaggaa
     1501 aaaaccaatt cggttgttca cgccgcgttt acgcagctcg ctggcaaacg gtaacaggtg
     1561 gtagtcatgc acccaaatga tgtcgttctc tttaatgagg ggcaataact tatccgctaa
     1621 taacgcattc acccgcatat agccttccca tgcaggacgc tgaaactgta ccaggtccag
     1681 acgatagtgg aacgctggcc agagaaccgc attggaaaat tgacagtaat aatcttcgta
     1741 atcttgttca ctcaggttaa acgatgccca ggtaatatta ccttttgtca ccttttttaa
     1801 tggctcatcc tcgttacctg tctcgccact ccagccgaac cacaacccgc cagccgcttt
     1861 tagcgcgcca agcacgccaa cagcgaggcc gccggcgccg cctttattat ccgggggggc
     1921 aattcgatta gatactacga ctaaacgact catagccatc tctcctgtta ttcattactt
     1981 gttgttcttg ttgtggataa ttgatttgtt ccagccagcg ccagacatcg ggtacgcttt
     2041 ccagccgcca tgccgcctgg gttgccccga cgcccacttt tacggaaatt ccgccagcgt
     2101 gattcaccac gccaaagcca gcctcatcgg tcaaatcgtc gcccacaaaa acgggaatcc
     2161 gtcccgtaaa gggcgcctcc tgcataaagg cggcaatcgc ttcgccttta ttagttccct
     2221 taggtttgat ttccacaaca catttaccag gctgcaacgc cagttgcggc cagtgctgcg
     2281 taacgtgttg cgcaagcgcc aacagcgccg cttcatgttc cggagcctga cggtagtgca
     2341 gcgcaaacgc catccccttt gtctccagct ccgttccggg cagcgctgca agcgtcgaac
     2401 gtaataacgc ctccacctca cggactaccg cttcaggaag gcgcacgata tgggttttac
     2461 cactgatgtc acgacgctct gccccgtgaa cgccagcgag cggaaagcga aaaggcttcg
     2521 ccaaagcatc cagctcagtc attgaacgcc ctgaaatcaa tgccagtgcc cctgcgttgt
     2581 gcgccgcgag acggtctaac aactgaagga ttttatgcgg taccactacc tgatcgggat
     2641 gaggctttat ctctgccaat gtgccatcaa ggtcaaaaaa atacgcatag ttcgcagtga
     2701 gttcggggga tacggttaac ggttctgcca ccctggtctc ctccttatca tcatattgag
     2761 actcacaaac ggtctcatta gtcatgtaag tatagacagt gtgacgctgc tcgccattta
     2821 gaaagaccat cgccagccgg ggtagcggtt ggcgatgacg tgaagctata ctgtttagtt
     2881 gagtgttaat tcatcaaatc atacgcttcg ctttttgctt ataatggtcg aagataactg
     2941 ctgccagaag gattcagccg cgaaccacgt actgtgcaaa aggtgaaatg ttgagcaggt
     3001 tcatcgcgtt ctccaccgtt cctgatatca gtacgctcgc caccacatat gagatttttc
     3061 cgaggccgcc tctcaggaaa acgcccccta atacgcacgc agaaataacg attaactcat
     3121 aacccaggga attcattgac ctgctttagc gttttttatg tagggtaaaa tcaaacgatt
     3181 cttgttagag aagacgtaaa acggtgcact gtctttcatt cattagataa atgctgatgg
     3241 ctggaatagt tttagcggaa aatgacataa cccagagcga attcatcagc caaaaggcag
     3301 gaaagccagc acattaatcc ataacatcag ccagctaatc cttacggccc tgggtgaata
     3361 acgattacca gggataatag atatgttcag cttgttcgcg aaccagcgca tcgtctccca
     3421 gcagtctggc ggaaagggtt agcgcgaaat caaagacatg acccaaccct ttgccgctaa
     3481 ttaaattacc atcttcaacc acgggcgcat ccacatagac accttccgga accgctttcc
     3541 acaggtcgcc ggaacagaca taacgacgcc ccttcagcaa tccgtgagca cccagcaccc
     3601 ttgccgccgc ggaacagata ggacaaatta atttgcctgc cgcatcatga cgcgcaacga
     3661 aagcgatcac cgccggatta gccgccagat tagcgctccc ctgcggaccg cccggcagca
     3721 ctaccgcatc aaaaagcgcc tgctggcgtt cactcagcgt gctgtccgca accataggaa
     3781 tatcatggta actcaccacc gcccgtgatt cagcacacgc cagcgtttcg acgtcgatat
     3841 gcaaacgtcg cagaatatca agagtaacaa tggcctctgc ttcttcaaat cctggcgcca
     3901 gtagcaccgc gacctttttc attgactgct ccttgttaac gag
//
LOCUS       DAJVSD010000313         3932 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.313, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000313 DAJVSD010000000
VERSION     DAJVSD010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3932)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3932)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3932
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.313"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(54..1454)
                     /gene="asnS"
                     /locus_tag="OQP62_004183"
     CDS             complement(54..1454)
                     /gene="asnS"
                     /locus_tag="OQP62_004183"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HCS1723572.1"
                     /translation="MSVVPVADVLQGRVAVDQEVTVRGWVRTRRDSKAGISFLAVYDG
                     SCFDPVQAVINNSLPNYNEEVLHLTTGCSVVVTGKVVASPGQGQSFEIQATKVEVAGW
                     VEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFDEQGFFWV
                     STPLITASDTEGAGEMFRVSTLDLENLPRNDQGRVDFDKDFFGKESFLTVSGQLNGET
                     YACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFADLEDNARLAEAMLKYVFKA
                     VLEERADDMKFFAERVDKDAIARLERFVSTDFAQVDYTDAVAILERCGKTFENPVFWG
                     VDLSSEHERYLAEEHFKAPVVVKNYPKEIKAFYMRLNEDGKTVAAMDVLAPGIGEIIG
                     GSQREERLDVLDARMAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQN
                     VRDVIPFPRTPRNASF"
     gene            complement(1655..2116)
                     /locus_tag="OQP62_004184"
     CDS             complement(1655..2116)
                     /locus_tag="OQP62_004184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HCS1723573.1"
                     /translation="MKLDAWDKNILTLLQRDNRLSQREIAEQVNLSPSAVNRRIAALE
                     EAGIIKGNVSLVDAGKVGRPVTIVVQVVIENERFNLLEEARQRFVSCPQVQQVYYVTG
                     DFDFLLVLNVRDMAEYETLTRELFFSSGNIKSFKTIVVMQNAKQEMRVLIE"
     gene            2434..3649
                     /gene="dpaL"
                     /locus_tag="OQP62_004185"
                     /pseudo
     CDS             2434..3649
                     /gene="dpaL"
                     /locus_tag="OQP62_004185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459977.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopropionate ammonia-lyase"
BASE COUNT         1058 a          929 c          942 g         1003 t
ORIGIN      
        1 cattcaggcg aaaaaaaagg ccagcatagc tggccttgag tgtgacgtaa aaatcagaag
       61 ctggcgttgc gtggggtccg tgggaacgga ataacatcgc gcacgttttg cacacccgtg
      121 acgtaagcga taaggcgttc aaagcccagg ccaaagccgg aatgcggtac agtaccgtag
      181 cgacgcaagt cgcgatacca ccagtaatcc tctttattca gccccatttc ggccatacgg
      241 gcatccagca catccagacg ctcttcacgc tgggaaccac cgatgatttc gccgattccc
      301 ggcgccagca catccatggc cgccacggtt ttgccatctt cgttaaggcg catgtaaaac
      361 gctttaattt ctttcggata gtttttcacc actaccggcg ctttgaaatg ctcttccgcc
      421 agataacgtt cgtgttcgga agaaaggtcg acgccccaga acaccgggtt ttcaaatgtc
      481 ttaccacagc gttccagaat ggcgaccgca tcggtgtaat ccacctgagc aaagtcggtg
      541 gagacaaaac gctccagacg agcgatagcg tctttatcca cgcgttcggc aaagaacttc
      601 atgtcatccg cacgctcttc cagaaccgcc ttgaagacat atttcagcat ggcttccgcc
      661 agacgggcgt tgtcttccag atcggcgaac gccacttccg gctccagcat ccagaactcc
      721 gccaggtggc ggctggtgtt ggaattttcc gcgcggaagg tcggcccaaa agtatagatt
      781 ttggacagcg cacaggcata ggtttcacca ttgagctggc cggagacggt caggaatgat
      841 tctttgccaa aaaagtcttt gtcaaaatct actctgccct ggtcgttacg cggcaggttt
      901 tccagatcca acgttgagac gcggaacatt tcgccagcgc cttcggtatc ggaagcggta
      961 atcagcgggg tagagaccca aaagaaaccc tgctcatcga agaagcgatg cagcgcctgc
     1021 gccagagtat ggcggacgcg cgctaccgcg ccaatcaggt tggtgcgcgg gcgcagatgc
     1081 gcgacttcac gcagatactc aatgctatgg cgttttgccg ccatcgggta ggtatccgga
     1141 tcttccaccc agcctgcgac ctctactttc gtggcctgga tttcgaaact ttgcccctgt
     1201 cccggcgacg cgacaacctt acctgttact accacggagc agcctgtcgt caggtgtaat
     1261 acttcttcat tataattggg cagagaatta ttaatgacag cctgtacagg atcaaagcag
     1321 gagccgtcat aaacggcgag gaaggagatg ccagcttttg aatctcggcg ggtacgcacc
     1381 catccgcgca cggtgacttc ttggtcaacg gctacgcggc cctggagtac gtcggctaca
     1441 ggcacaacgc tcataatatt ctctctagtt aatagtcgga aaaaataaac acttgtccac
     1501 ccgaaatggg ggtattccta tgttacctgg catctgcaat cagacaagca gaaatcgcat
     1561 ctggaagcag gttttcagaa agaaacctgt aaaaagttcg cacctgctcg cgaacaattg
     1621 agaatttagg ctggttttgt aagctttgcg cacgttactc gatcaggacg cgcatctctt
     1681 gcttggcgtt ttgcatcacg acaatcgttt taaaagactt aatattgcct gaggaaaaga
     1741 aaagctcacg ggtaagtgtt tcatattccg ccatgtcacg aacattgagc accagtaaaa
     1801 agtcgaaatc gcccgttacg tagtagacct gctgcacctg cgggcaactg acaaaccgtt
     1861 gacgagcctc ttccagtaaa ttgaatcgct cgttttcgat caccacctgc accacaatcg
     1921 tgaccgggcg tcccactttg ccagcatcaa caaggctgac attgccttta attatgcccg
     1981 cctcctccag tgccgcgata cgacgattca ctgccgaagg tgaaagattg acctgttcgg
     2041 cgatttcccg ctgagaaaga cgattatcgc gttgcaataa tgtcagaatg tttttatccc
     2101 aggcgtcaag cttcatatcg caaataacct ctttaatgtg atgactatca ctgtgcgcaa
     2161 ttttgccgcg tccaggccgt taaaaaaagg tgaaaattgc acgacgatgg gcattttcgc
     2221 gccatttaac agcaataagc atagtactat cataatcagc ggaataaaga aaaggacgta
     2281 atagatattg tgcgactctt ttatcagtac ggtttattaa agtgaggata accactacta
     2341 cagccacaaa acgcgagttc tttacttgtt tctactcaat aattgccaaa aacatattat
     2401 ttcaataaat aaactttaac aaaaggtatc attatgcatg agcttattaa ataccagttt
     2461 aatacacgtc ggaaaaaata tggtacagga gcggctttaa gtttgcttaa cggaaatgtt
     2521 gggcgtgagg tgttagcatt tcataaaaaa ttacccaatt atgccgttac gccgttacat
     2581 aatctggcgc atctaagccg gcggcttgga ctagggtcca tccatattaa agatgagtcc
     2641 tggcgttttg gtctgaatgc ttttaaaggt ctgggcggct cttatgctgt aggaaaatat
     2701 ctcgctgata aattgcaatg tgatattaac tcgttaagtt ttgctgccct taacactcct
     2761 gagattaaag aaaaaattaa agattgtgtt tttgttaccg cgacggatgg caatcatggc
     2821 cgtggtgtgg cgtgggcggc ggagcaatta ggtctaaaag ccgtcgttta tatgcctaag
     2881 ggatcatcgt taatctgggc agagaatatt cgccatcatg gagctgaatg caccatcacc
     2941 gatctgaact acgatgatgc agtgcgactg gcccatagaa tggcgcaaac aaaaggctgg
     3001 gtgcttttgc aggatacagc ctggacaggg tatgaagaga tcccaacatg gattatgcaa
     3061 ggctatatga tactagcggt tgaagcttat gagcagctcg cagaaacaaa cagtccgttg
     3121 ccaacccacc ttattttaca agcggggggt gggatcattt gctggcagtg ttatgggtta
     3181 ttttgttgaa aaaatgcagg aaaatacccc taatattatt gtggttgagc cgcatcaggc
     3241 caactgtctt tatcaatccg cagttatgaa tgatggtcaa cctcactgcg tcactggcga
     3301 tatggcgacg ataatggccg ggcttgcgtg tggggagccg aatattatca gttggcctat
     3361 tattcgggac aacaccagtt gttttatttc cgctgatgat tgtctggcgg ctaagggtat
     3421 gcgcattgct gccgcgccgc gtccaggcac tgatacgcct tttatttccg gcgagtccgg
     3481 agctattggc gtagggttac tttatgagtt gatgaacaat atgcattatc aggatcttgc
     3541 taatcgctta cagcttgatg ccaatgctca tgttctgctt attagcaccg aaggcgatac
     3601 gtccccagat atttatgaag atatagtctg gaacggacgc agtgcttaaa cattacgact
     3661 aaaaaattag ataataaagg cagcatgtaa aaaacgcgtt ttttatacgc ataataaacc
     3721 taatgcagga agcaaaactt cataacaata taccattaaa acggcattta gtgagtaagg
     3781 gatgctccta cccgctgact ttccagttta gtgttgttgg caaaattcag gattacgctg
     3841 aactggaaag attatttctg agactgaacg aattaattta aatccgaggt cattatgtta
     3901 gagcaacttt cacaactctt tgaatttcta tg
//
LOCUS       DAJVSD010000314         3898 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.314, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000314 DAJVSD010000000
VERSION     DAJVSD010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3898)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3898)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3898
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.314"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(58..285)
                     /locus_tag="OQP62_004186"
     CDS             complement(58..285)
                     /locus_tag="OQP62_004186"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723574.1"
                     /translation="MVIPEVLIGGINVIVDHTNYTNLRRDAQVFFVSPEPVTVTDNLH
                     NSLHFRLFLCVFGLAMQTREAHNQDPRGIDW"
     gene            493..1521
                     /gene="galR"
                     /locus_tag="OQP62_004187"
     CDS             493..1521
                     /gene="galR"
                     /locus_tag="OQP62_004187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator GalR"
                     /protein_id="HCS1723575.1"
                     /translation="MATIKDVARLAGVSVATVSRVINDSPKASEASRLAVTSAMESLS
                     YHPNANARALAQQATETLGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQ
                     KERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQIPGMVLINRILPGLEHRCVALDD
                     RYGAWLATRHLIQQGHTRIGYICSNHTISDAEDRLRGYYDALAESHIPANDRLVTFGE
                     PDESGGEQAMTELLGRGRHFTAVACYNDSMAAGAMGVLNDNGVGVPGEVSLIGFDDVL
                     VSRYVRPRLTTIRYPIVTMATQAAELALALAGKCPTPEVTHVFSPTLVRRHSVSTPTD
                     TGHLSTTD"
     gene            1532..2554
                     /locus_tag="OQP62_004188"
     CDS             1532..2554
                     /locus_tag="OQP62_004188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000968342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS1723576.1"
                     /translation="MMATMLDVSRHAGVSKATVSRVLNGTGQVKESTRQKVFTAMQAL
                     DYRPNLLARSLANRTSNSIGLVVSTFDGFYFGSLLRRASRQAEFHNKQLIVTDGHDTP
                     EREQKAVQMLADRQCDAIILYTRYMDEPTILSLIDATEMPLVIINRNITQAHDRAIFF
                     EQETAAFQAVEYLITQGHRDIACITLPVHTPTGTSRVAGYRKALEKYGIPWQPAKVKY
                     GDYTLTRGYDACRELLEEGVTFSALFACNDDTALGAAKALRQAGLRIPQDVSLFGFDD
                     APGATWLEPGLSTVYLPIEDMIATAIDQAVRLANSEPVAPIPPFTGTLILRESVAAGP
                     FFQRPV"
     gene            complement(2564..3826)
                     /gene="lysA"
                     /locus_tag="OQP62_004189"
     CDS             complement(2564..3826)
                     /gene="lysA"
                     /locus_tag="OQP62_004189"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HCS1723577.1"
                     /translation="MSLPHYHAETDLNAENLLRLPAEFGCPVWVYDAHIIRRQIAALQ
                     QFDVVRFAQKACSNIHILRLMRAQGVKVDSVSLGEIERALAAGYDPQTCPDDIVFTAD
                     VIDAATLARVSELHIPVNAGSVDMLTQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGE
                     NSKHGIWHSDLPAALAVMQKYRLKLVGIHMHIGSGVDYGHLEQVCGAMVRQVLECGQD
                     VEAISAGGGLSIPYHEGEEPVDTRHYYGLWNAAREQIARHLGHAVKLEIEPGRYLVAQ
                     SGVLVTQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHRISALAADGRALENGPWVE
                     TVVAGPLCESGDVFTQQEGGMVETRALPAVIPGDYLVLHDTGAYGASMSSNYNSRPLL
                     PEVLFDNGQARLIRRRQTIEELLALEML"
BASE COUNT          901 a         1092 c         1059 g          846 t
ORIGIN      
        1 ctgcgcatcc gcgcaggttg gtgcaagaga caggtacgaa gagcgtaccg aataatctca
       61 ccaatcaata cctctgggat cttgattgtg ggcttcgcgc gtctgcatcg ccagtccgaa
      121 aacgcaaagg aataaacgga aatgcaacga gttgtgtaaa ttatccgtta ctgttacagg
      181 ttcaggcgaa acaaaaaaaa cctgcgcatc tctacgcagg ttggtgtaat tcgtgtgatc
      241 aacaatgacg ttgattccac ctatcaatac ctctgggatc accactctat caacctgact
      301 cgctggcctg ccagcagaca atcgcaacag cgcttcgcaa actgtaacga aagatttgta
      361 ttgtcacttt acagacgcat ttctcccgtg caggtcacat ttgtccgaca cggcggggca
      421 agaggcttga acagacgttc attttccgta aaactggcgt aatgtaagcg tttacccact
      481 ataggtatta tcatggcgac cataaaagat gtagcccgac tggccggtgt ttcagtcgcc
      541 accgtttctc gcgttattaa cgattcgcca aaagccagcg aagcgtcccg gctggcggtg
      601 accagcgcaa tggagtccct gagctatcac cctaacgcca acgcgcgcgc gctggcacag
      661 caggcaacgg aaaccctcgg tctggtggtc ggcgacgttt ccgatccttt tttcggcgcg
      721 atggtgaaag ccgttgaaca ggtggcgtat cacaccggca attttttact gattggcaac
      781 gggtatcata acgaacaaaa agagcgtcag gctattgaac agttgattcg tcatcgttgc
      841 gcagcgttag tggtacacgc caaaatgatt ccggatgcgg acctggcctc attaatgaag
      901 caaatccccg gcatggtgct gattaaccgc attttaccgg ggttagaaca tcgctgtgtc
      961 gcgctggatg accgttacgg ggcatggctg gcgacccggc atctgatcca gcaaggtcat
     1021 acgcgtattg ggtatatctg ttccaatcac actatctctg atgccgaaga tcgcctgagg
     1081 ggctattacg atgcgctggc ggaaagccat atcccggcta acgatcggct ggtgacgttc
     1141 ggcgaaccgg atgaaagcgg cggcgagcag gcgatgactg agttattagg tcgcggcaga
     1201 cattttaccg cggtggcctg ctataacgac tcgatggcgg ccggcgcgat gggagtatta
     1261 aatgataatg gcgtgggggt gccgggcgaa gtatcgctca tcggttttga tgatgtactg
     1321 gtctcacgct atgtgcgtcc ccgactgacc accattcggt atccgatcgt caccatggcg
     1381 acacaggcgg cggagctggc cttagcgctg gcagggaaat gccctacgcc agaagtaact
     1441 catgtattta gtccgacact ggtacgccga cattcggtgt ccacgccgac ggataccggg
     1501 cacctgtcga caaccgatta atcagggtag catgatggcg acaatgctgg atgtttcccg
     1561 ccatgcgggc gtatcaaagg ccaccgtctc acgagtgctg aatgggacgg ggcaggtaaa
     1621 agaaagcacg cgccagaaag tgtttacggc gatgcaggct ctggactatc gccccaacct
     1681 gctggcacgc tcgctggcaa atcgcaccag caacagcatc ggtctggtcg tctctacgtt
     1741 tgacggcttc tattttggca gtttgttgcg ccgggcgtcg cgccaggcgg agtttcataa
     1801 caagcagttg atcgtcaccg atggtcacga tacgccggaa cgagagcaga aagccgtaca
     1861 aatgttggcc gacagacagt gcgacgctat tattctttac actcgctata tggatgagcc
     1921 gacgattttg tcgttgattg acgccacgga aatgccgctg gtgattatta atcgcaacat
     1981 cactcaggcc cacgatcgcg ctattttctt cgagcaggag acggcggcat tccaggcggt
     2041 ggaatacctg attacgcagg gccatcgcga tatcgcctgt attacgctgc ctgttcatac
     2101 tcccaccggc acatcacgcg tagcgggtta tcgaaaggcg ctggaaaaat atggcattcc
     2161 ctggcaaccg gcaaaagtga aatacggcga ttacacgctg acgcgcggct atgacgcctg
     2221 ccgggaatta ctggaggaag gcgtcacgtt tagcgcgcta ttcgcctgta atgatgacac
     2281 ggcgctgggc gcggcaaaag cgctgcgcca ggccggatta cgcatcccgc aggatgtgtc
     2341 gctgtttggt tttgacgatg cgccgggcgc aacctggctt gagccggggc tttcaacagt
     2401 ctatttaccc atcgaggata tgatagccac cgcaattgat caggccgttc gtctggcgaa
     2461 cagcgagccg gtcgccccga tcccgccctt taccggcacg ctgattctgc gcgagtccgt
     2521 cgccgcgggc ccgttttttc aacgtccggt ctaatgatgc gcttcagagc atctccagcg
     2581 ctaacagctc ttcaatggtt tgacgacggc ggatcagccg cgcctgtcca ttgtcaaaca
     2641 gtacttccgg caggagcggg cggctgttgt aattcgatga catagacgcg ccgtacgcgc
     2701 cggtatcgtg caatacgagg taatcgccgg ggatgaccgc aggtaaggcg cgtgtttcaa
     2761 ccattccccc ttcctgctgc gtaaaaacat cgcctgattc gcatagcggc ccggcgacca
     2821 ccgtctcgac ccacgggcca ttttcaagcg cgcgaccatc cgccgccagc gccgaaatac
     2881 ggtgatagct accgtacatc gccgggcgca tcagatcgtt aaaaccagcg tcgaccagca
     2941 cgaaatggcg gcttcccatc tgttttacgc tacgcacctg cgttaccagc acgcccgatt
     3001 gcgccaccag ataacgtccg ggttcgatct caagtttgac cgcatgtccc agatggcggg
     3061 cgatttgctc gcgcgccgcg ttccacagac catagtaatg gcgcgtatca acgggctctt
     3121 ctccctcatg ataaggtatc gagagtccgc cgcctgccga aatcgcctcc acatcctgac
     3181 cacattccag cacctggcgt accatcgcgc cgcaaacctg ctccagatgg ccataatcga
     3241 cgccggaacc aatgtgcata tggataccga caagtttcag tcggtatttc tgcattaccg
     3301 ccagcgccgc cggaagatcg ctatgccaga tgccgtgttt gctgttttcg cccccggtgt
     3361 tggttttctg gctgtggccg tgaccaaagc caggattcac gcgcaaccag acgcgatgcc
     3421 caggcgaaac ctgaccaagc tgcgtcagca tatctaccga gccggcattg accggaatat
     3481 gcagttcact gacgcgcgcc agcgtggcgg cgtcaatcac atcggcggta aaaacgatat
     3541 catcagggca cgtttgcgga tcgtagcccg ccgccagcgc acgttcgatc tcccccaatg
     3601 aaacagaatc caccttgaca ccctgcgcgc gcattaagcg caggatatga atgttcgaac
     3661 aggctttttg cgcaaaacgc acgacgtcaa actgctgcag ggcggctatc tgacggcgaa
     3721 taatgtgcgc gtcatagacc cagaccggac agccgaattc agcaggcaat ctgagcaaat
     3781 tttcagcgtt aaggtcagtt tcagcgtgat aatgcggcaa tgacataaca aactccggaa
     3841 caggcttttt aacgattacg ccatacctta gaaagaataa aaaatatcgt tttattgt
//
LOCUS       DAJVSD010000315         3850 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.315, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000315 DAJVSD010000000
VERSION     DAJVSD010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3850
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.315"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            172..>3850
                     /gene="bapA"
                     /locus_tag="OQP62_004190"
     CDS             172..>3850
                     /gene="bapA"
                     /locus_tag="OQP62_004190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001237670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm-associated protein BapA"
                     /protein_id="HCS1723578.1"
                     /translation="MRLLAVVSKLTGVSTTLESSAVTLNAPSIVKLSVARDEISQLTR
                     INQDLVVRLHSGETITIKNFYVTNDLGASQLVLAENDGTLWWVENPQAGLHFEQIADI
                     NELLVTSGASHEAGGAVWPWVLAGAVAAGGIAAIASSGGGDSHHHSDGDNPPPDNTNP
                     DGNPPDNSNPGGSNPNGNTPGSSNPVDTTPPLAPGELLISADGKTVSGEAEAGSLITI
                     KDPSGNVVGEGKADSDGKFSIDLTAPQISGEQLTVTATDDAGNTGPSATIDAPNIPLP
                     DTPVITAAIDDAAPLTGTLSNNQFTNDNTPTLEGTGSAGTVIHIYANGQEIGSTTVDT
                     SGNWHFAITSALADGENHFTAIATNVKGESSESARFTLTIDTLSPDAPRVELMADNTG
                     LLTGPLQNNDRTDEAKPLFSGQGEAGNTITIKEGSTVIGSATVDENGRWTFTPTTPLS
                     DGEHTFTVEQSDKAGNASRVTTTPTIIVDTTPPDAAIIDNVAKDGTTVSGTAEAGSTV
                     SIYDPAGNYLGSTITGENNHFSITLNPAQTHGERLEARIQDAVGNIGPATEFTASDSQ
                     YPAQPTILTVTDDAGAVTGLLKNGDATDDNRPTLSGTAEPGSTISINDNGFPVPSFPP
                     IVADADGKWSFTPSLALADGDHVFTATATNDRGTSGQSVAFTIDIDTQPPVLEGLAVS
                     DVGDRLTGTTEAGSTVVIKDSLGNTLGSGTAGDDGTFSIGISPAKINGETLSISVTDK
                     AANSGPVETLNAPDKTAPAAPNGLIVATDGLSVSGQAEAGATVTIRDSSNTVLGSAVA
                     NGNGQFIVPLNAAQTNGQALIATATDIANNESAAATVDAPDSTAPEMPKNVVISEDGA
                     SISGTAEPGSSITITTPDGTPLGSGKADGEGHFTLPLAPAQTNGEQVTVTATDSANNV
                     SPPTTAQAPDITAPDKPIITQVLDDVESFTGPLVNGQTTNDNRPTLSGTAEAGARVEI
                     FDNGVSLGLATLQPNGGWTFTPSQNLGEGAHRLTVIATDAKGNASPAGNESPESISFT
                     LRIDTQAPDAPQIVSAAITGGEGEVLLANGSITNQRMPTLSGTGEPGAIITLYNNGVE
                     LATVQVNPQGSWTYPLTRNLSEGLNILTATATDAAGNSSPTSGVFSVTLDTQPPAQPD
                     APLISDNVAPVIGNIGNNGATNDTTPTFSGTGEIGSTIILYNNGSEIGRTTVGDNGSW
                     NFTPAALTPETYTITVTETDIA"
BASE COUNT          965 a         1165 c         1013 g          707 t
ORIGIN      
        1 aaacaaatgg ttattcgacg agaaaaccag accttcacct acgctcataa aaaagaatat
       61 ggctacggaa attcatctct cacgataaac gggaaggctc gtctacgcat tttgccctga
      121 acgtcgtgcc cgttaattaa tacacagagc aaatccatca ggagctaatt tatgcgtcta
      181 ctcgccgtgg tttcgaaatt gactggcgtc tccaccactc tggaatcctc agcggtcact
      241 cttaacgcgc cttcaattgt taaattatca gtggcccggg atgaaattag tcaacttacg
      301 cgcattaatc aggatctggt ggtgaggctc cattccggcg aaacgatcac gattaaaaac
      361 ttttacgtta ccaacgatct gggcgcaagc cagctggtac tggcggaaaa cgatggcacg
      421 ttatggtggg tggaaaatcc gcaagccggg ctacattttg aacaaatcgc tgatattaat
      481 gagctgctgg tcacttccgg cgcttcccat gaagcaggcg gcgccgtttg gccgtgggta
      541 ctggctggcg cggtggcggc tggcggcatt gccgctatcg cgtcttccgg cggcggcgat
      601 tcccaccatc attcggatgg cgataatccg ccccccgata acaccaatcc tgacggtaat
      661 ccccctgata acagcaatcc cggcggcagt aaccctaacg gcaatactcc aggtagcagt
      721 aatcctgtag atactacccc gcctctcgct cccggcgaat tattgatttc agcggacgga
      781 aaaacggtga gcggcgaggc cgaagcgggc agtctcatta ccatcaaaga tccctcaggc
      841 aacgtcgttg gcgagggcaa agcggatagc gacggtaaat ttagtattga tctgacagcg
      901 ccacagatta gcggcgaaca acttaccgtg actgcgactg acgatgccgg caataccggc
      961 ccatccgcaa ccattgatgc gcccaacatt cctctccccg atacaccggt tatcaccgcc
     1021 gctatcgatg atgccgctcc cctcaccggc acgctgagca ataatcagtt tacgaacgac
     1081 aataccccca ctctggaggg caccggcagc gcaggcacag tcatccatat ttacgccaat
     1141 ggtcaggaaa taggctcaac aacagttgat accagcggaa actggcattt tgccattacc
     1201 agcgcgctag cggatgggga aaatcatttc accgccattg cgactaacgt taaaggcgaa
     1261 agtagcgaat cagcccgctt tacgctgact atcgacacac tcagccccga tgctccacgc
     1321 gttgaactga tggccgataa caccggtttg ctcaccggac cgctacagaa taatgaccgg
     1381 actgacgagg caaaaccgct attttccggg cagggagagg caggcaatac catcacgatt
     1441 aaagagggtt caaccgttat cggcagcgct accgtagacg aaaatggacg ctggaccttt
     1501 acgccgacta cgccgttaag cgatggcgaa cataccttta ccgtcgaaca gagcgacaaa
     1561 gccggaaacg caagccgcgt gacgacaacg cctactatca ttgtggacac cacgccgccg
     1621 gacgccgcta tcattgataa tgtcgcgaaa gacggcacaa ccgttagcgg caccgctgaa
     1681 gctggcagta ccgtgtcgat ctatgacccg gcgggaaatt acctgggctc cacgattacc
     1741 ggagaaaata accacttcag catcacgctg aatccggccc agacccacgg cgagcgtctg
     1801 gaagcgcgta ttcaggacgc cgtcggtaac atcggccccg ccacagagtt taccgcttct
     1861 gactcacagt atcctgccca gccgactatc cttaccgtga cggatgacgc tggcgccgtt
     1921 accgggctgt tgaaaaatgg cgatgccaca gatgataacc gcccaaccct cagcggtact
     1981 gctgaaccag gcagtacgat atcgattaac gataatggct ttcctgttcc gagctttccg
     2041 cccattgtcg ctgacgctga cggcaaatgg agctttaccc cctcgctggc gcttgccgat
     2101 ggcgaccatg tctttaccgc taccgcgacc aacgatcgcg gcactagcgg gcagtccgtc
     2161 gcctttacca ttgatatcga cacgcagccg ccggtgctgg aaggcctggc agttagcgac
     2221 gtcggcgaca gactcaccgg cactacggaa gctggcagca ctgtggttat caaagatagc
     2281 ctgggaaata cgctcgggag tggaacggca ggcgacgacg gcaccttctc aataggtatt
     2341 agcccggcga aaattaacgg tgaaacatta agcattagcg ttaccgataa agccgcgaat
     2401 agcggtccgg tagaaacgct gaacgcgccg gataaaactg cgcctgcggc accgaacggt
     2461 cttatcgtgg cgaccgacgg tctgtccgta agcggtcagg cggaagccgg ggcaacggtc
     2521 actatccgcg acagtagcaa taccgtactt ggcagcgccg tcgctaacgg caacggacaa
     2581 tttatcgttc cgctgaatgc ggcgcagact aacggccagg cgcttatcgc taccgccacc
     2641 gatatagcga acaacgaaag cgccgccgcg acggtcgacg cgccggacag taccgcgcca
     2701 gaaatgccga aaaacgtggt aattagtgag gatggcgcca gtatcagcgg caccgccgaa
     2761 ccgggtagct ccattacgat caccacgccg gacggcacgc cgctcggcag cggcaaagca
     2821 gatggcgaag gtcattttac ccttcccctc gcccccgcac agaccaacgg cgaacaggtt
     2881 accgtcaccg ccaccgacag cgccaacaac gtcagcccgc caactacagc gcaagcgccc
     2941 gatatcaccg ccccggataa gcccattatc acccaggtgc tggacgatgt tgaaagcttc
     3001 accgggccgc tggttaacgg acaaaccacc aatgacaacc gccccaccct tagcggtacg
     3061 gcggaggctg gcgcgcgtgt cgaaattttt gataacggcg tttcgctggg gctcgccacg
     3121 ctacagccca acggcggctg gacgtttacg ccgtcgcaaa atttaggtga aggcgcgcat
     3181 cgactgaccg taatcgcaac cgacgctaaa ggcaatgcca gtccggcggg gaacgaaagt
     3241 ccggaatcca tcagctttac cctacgcatc gatacccagg cgccggatgc gccgcagatc
     3301 gtgtcagccg ccatcacagg cggagaaggc gaggtgctac tggcaaacgg cagtattacc
     3361 aatcagcgta tgccgaccct cagcggcacc ggcgaacccg gcgccatcat caccctgtac
     3421 aataacggcg tagaactggc taccgtccag gtcaatccac agggtagctg gacctatccg
     3481 ctaacccgta atctgagcga agggttaaac atcctgacgg ccaccgccac ggatgccgca
     3541 ggcaatagta gcccgacctc cggcgttttc tccgttaccc ttgataccca gcctccagcg
     3601 cagcctgacg cgccgctaat cagcgataac gtcgcgccgg ttatcggcaa catcggcaat
     3661 aatggcgcaa cgaacgatac cacgccgacc ttcagcggca cgggagagat cggcagcacg
     3721 ataattctct acaataatgg cagtgaaatt ggtcgcacaa cggtaggcga taacggtagc
     3781 tggaacttta cgcctgcggc actgacgcca gaaacctata ccattaccgt cacggaaacc
     3841 gatatagcgg
//
LOCUS       DAJVSD010000316         3842 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.316, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000316 DAJVSD010000000
VERSION     DAJVSD010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3842
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.316"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            372..1142
                     /gene="garL"
                     /locus_tag="OQP62_004191"
     CDS             372..1142
                     /gene="garL"
                     /locus_tag="OQP62_004191"
                     /EC_number="4.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxyglucarate aldolase"
                     /protein_id="HCS1723579.1"
                     /translation="MNNAIFPNKFKAALAAQQVQIGCWSALASPITTEVLGLAGFDWL
                     VLDGEHAPNDVTTLIPQLMALKGSASAPVVRVPTNEPVIIKRMLDIGFYNFLIPFVET
                     QEEAARAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITIIVQIESQLGVDN
                     VDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQQTIQHIFARAKAHGKPCGILAP
                     VEADARRYLEWGATFVAVGSDLGAFRASTQKLADTFKK"
     gene            1168..2058
                     /gene="garR"
                     /locus_tag="OQP62_004192"
     CDS             1168..2058
                     /gene="garR"
                     /locus_tag="OQP62_004192"
                     /EC_number="1.1.1.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxy-3-oxopropionate reductase"
                     /protein_id="HCS1723580.1"
                     /translation="MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA
                     GAETASTAKAIAEQCDAIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLA
                     SREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV
                     HTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLD
                     AKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGN
                     DDHSALACYYEKLAKVEVTR"
     gene            2156..3301
                     /gene="garK"
                     /locus_tag="OQP62_004193"
     CDS             2156..3301
                     /gene="garK"
                     /locus_tag="OQP62_004193"
                     /EC_number="2.7.1.165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate 2-kinase"
                     /protein_id="HCS1723581.1"
                     /translation="MKIVIAPDSYKESLSAAEVAQAIEKGFREIFPDAQYVSVPVADG
                     GEGTVEAMIAATQGVERAAWVTGPLGEKVKACWGMSGDGKTAFIEMAAASGLALVPPE
                     KRNPLITTSRGTGELILQALESGASNIIIGIGGSATNDGGAGMMQALGAKLRDANGAD
                     IGYGGGSLHCLSNIDISELDPRLKLCAIRVACDVSNPLIGDNGASRIFGPQKGATEEN
                     IVELDRNLAHYADIIKKSLNVDVKAAPGAGAAGGMGAALMAFLGAELRSGIEIVTAAL
                     NLEEHIHDCTLVVTGEGRIDSQSIRGKVPIGVANVAKKYHKPVIGIAGSLTHDVGIVH
                     HYGIDAVFSVLTRIVTLEEAFRGAFDNIYRASRNVAAALAIGMRSAG"
     gene            3334..3709
                     /gene="rnpB"
                     /locus_tag="OQP62_004194"
     ncRNA           3334..3709
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="OQP62_004194"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
BASE COUNT          932 a          920 c         1159 g          831 t
ORIGIN      
        1 gaaatttttt atgtagggca ggcaaagcgt aaatgtgtgc attagcgccc agtatcatgg
       61 gcgtatgctc aaaaataagc gttaaataaa ccctttttaa tgagcgtttg cacaatgatt
      121 atccgacata ggctgtttat actgaatggc gaattcagtg tatctgacga gttatttgaa
      181 aatatcatga taataataaa agacgataaa gatatcagaa cggtatattg tgctacagga
      241 tgtgtaccac attagaaata gaatgtggag acccattctg atttcaaata agcattttta
      301 ttgtcgttgc tataagtcat ggtggcggca tcacatgtag agaattaaag aaataagcga
      361 aggtataagc gatgaataac gctattttcc cgaataagtt taaagcggcg ctggcggcgc
      421 aacaggtgca gattggctgc tggtctgcac tggcaagccc aatcaccacc gaagtactcg
      481 gtctggcggg atttgactgg ctggtgctgg atggcgaaca tgcgccgaac gatgtgacca
      541 ccttaattcc gcagttaatg gcattgaaag gcagcgccag cgcgcctgtg gtacgtgtgc
      601 caaccaatga accggtcatt atcaaacgga tgctggatat tgggttttat aacttcctga
      661 tcccctttgt tgaaacgcaa gaggaagcgg ctcgcgccgt cgcctcgacg cgttacccgc
      721 cggaaggcat tcgcggcgtc tccgtttctc accgcgcgaa tatgttcggc acggtgcctg
      781 attactttgc gcagtcgaac aaaaacatca ccattattgt tcaaatcgaa agccagttgg
      841 gtgtcgacaa tgttgatgcc atcgccgcaa cggaaggcgt tgatggcatt tttgtcggcc
      901 ctagcgattt ggccgccgcg ctgggtcatc tcggcaatgc ttctcaccct gacgtgcagc
      961 agacgattca acatattttc gcccgcgcta aagcgcacgg taaaccgtgc ggcattctgg
     1021 cgccggtaga ggcggatgcc cgccgttatc tggaatgggg cgcgaccttt gtcgccgttg
     1081 gcagcgattt aggcgcattc cgcgccagca cgcagaagct tgccgacacc tttaaaaaat
     1141 aatcctggta tggaaagaga gaacgctatg acgatgaaag ttggctttat tggcttaggc
     1201 atcatgggta agcccatgag caaaaactta ctgaaagcag ggtattcgct ggtggtgtcc
     1261 gatcgtaatc ctgaagcgat tgccgacgtc attgccgcag gcgcggaaac ggcctctacg
     1321 gcgaaggcga tcgctgaaca gtgtgacgcc atcatcacga tgctgcctaa ctctccgcat
     1381 gtgaaagagg ttgcgctggg cgagaacggt atcatcgaag gcgcgaagcc gggaaccgta
     1441 ttgattgata tgagttctat cgcgccgctg gcaagccgtg aaatcagcga tgcgctgaag
     1501 gcgaagggcg ttgagatgtt ggatgcgccg gtcagcggcg gcgagccgaa ggcgattgat
     1561 ggcacgctgt cggtgatggt ggggggcgat aaagccattt tcgacaagta ctacgacctg
     1621 atgaaagcga tggcgggttc cgtggtgcat accggcgata tcggcgcagg caacgtcaca
     1681 aaactggcta accaggtgat cgtggcgttg aatatcgccg ccatgtctga agcgctgacg
     1741 ctggcgacta aagcgggcgt caacccggat ttggtctatc aggcgattcg tggcggtctg
     1801 gctggcagca cggtactgga tgcgaaagcg ccgatggtca tggacagaaa ctttaagcca
     1861 ggtttccgta tcgatctgca cattaaagat ctggcgaatg cgctggatac ctcccacggc
     1921 gttggcgcgc agctcccgct gaccgccgcc gttatggaaa tgatgcaggc gttacgcgcg
     1981 gatggacacg gtaatgacga ccatagcgcg ctggcgtgct actacgaaaa actggcgaaa
     2041 gtggaagtca ctcgctaacg acgttgtgcc cggatggcgt gtagcgatcc gggcctgaat
     2101 ttcaggctgg ataagtgaaa cgccatccgg cgttgtgcag taacaggcta ccactatgaa
     2161 aatcgtaatt gcccccgact cctataaaga aagcctttct gccgccgagg tagcgcaggc
     2221 gatagaaaaa ggatttcggg aaattttccc cgatgcgcaa tatgtctctg ttccggttgc
     2281 cgatggcggc gaaggaacgg tcgaagccat gattgccgcg acgcagggcg ttgaacgcgc
     2341 cgcatgggtg accgggccgt tgggtgaaaa agtgaaagcc tgctggggaa tgtccgggga
     2401 tggtaaaacc gcgtttattg aaatggcggc ggccagcgga ctggcgctgg ttccgccaga
     2461 aaaacgcaac cctttgatta ctacctcgcg gggaacgggg gagctgatat tgcaggcgct
     2521 ggaaagcggc gcaagcaata tcattatagg cattggcggc agcgcgacaa atgacggcgg
     2581 cgcagggatg atgcaggcgt taggcgcaaa actgcgcgat gcaaacggcg cggatattgg
     2641 ttacggtggc ggaagccttc attgtctaag caacattgat atttcagagc tcgatccccg
     2701 tttaaaactc tgcgctattc gtgtcgcttg cgatgtctcc aatcctctta tcggcgacaa
     2761 tggcgcatca cgaatttttg ggccgcagaa aggcgcgacc gaagagaaca ttgttgagct
     2821 ggacaggaat cttgctcatt atgccgacat cataaaaaaa tcgctgaatg tcgacgtaaa
     2881 ggcggcgccc ggcgcaggcg cggcaggcgg tatgggggcg gcgttaatgg cttttctcgg
     2941 tgcggaatta cgcagcggga tcgaaattgt cacggcggca ctgaacctgg aggagcatat
     3001 ccacgactgt acgctggtgg tgacgggaga agggcggatt gatagccaaa gcattcgcgg
     3061 taaagtgccg attggcgtcg cgaatgtggc gaaaaaatat cataagccag tgattggcat
     3121 tgccggcagc ctgacgcacg atgtaggaat agtacatcat tatggcatcg acgctgtctt
     3181 tagcgtactc acgcgcatcg tgacgctgga ggaggctttt cggggcgctt ttgacaatat
     3241 ttatcgggca tccagaaatg ttgctgccgc tctggcgata ggaatgcgca gcgcagggtg
     3301 acaaagtcgc gcgaaccctc tatactgcgc gccgaagctg accagacagt cgccgcttcg
     3361 tcgtcgtcct ttcggggaga cgggcggagg ggaggaaagt ccgggctcca tagggcaggg
     3421 tgccaggtaa cgcctggggg gggaaaccca cgaccagtgc aacagagagc aaaccgccga
     3481 tggcccacgc aagtgggatc aggtaagggt gaaagggtgc ggtaagagcg caccgcgcgg
     3541 ctggtaacag tccgtggcac ggtaaactcc acccggagca aggccaaata ggggttcata
     3601 aggtacggcc cgtactgaac ccgggtaggc tgcttgagcc agtgagcgat tgctggccta
     3661 gatgaatgac tgtccacgac agaacccggc ttatcggtca gtttcacttc ttcataaaac
     3721 ccgcttcggc gggtttttgc ttttacaggg cggcaggatg aatgactgtc cacgacgcta
     3781 tacccaaaag aaagcggctt atcggtcagt ttcacttctt cataaaaccc gcttcggcgg
     3841 gt
//
LOCUS       DAJVSD010000317         3806 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.317, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000317 DAJVSD010000000
VERSION     DAJVSD010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3806)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3806)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3806
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.317"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(176..262)
                     /locus_tag="OQP62_004195"
     tRNA            complement(176..262)
                     /locus_tag="OQP62_004195"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(226..228),aa:Leu,seq:taa)
     gene            complement(274..347)
                     /locus_tag="OQP62_004196"
     tRNA            complement(274..347)
                     /locus_tag="OQP62_004196"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(313..315),aa:Cys,seq:gca)
     gene            complement(400..475)
                     /locus_tag="OQP62_004197"
     tRNA            complement(400..475)
                     /locus_tag="OQP62_004197"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(440..442),aa:Gly,seq:gcc)
     gene            complement(627..1175)
                     /gene="pgsA"
                     /locus_tag="OQP62_004198"
     CDS             complement(627..1175)
                     /gene="pgsA"
                     /locus_tag="OQP62_004198"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HCS1723582.1"
                     /translation="MQFNIPTLLTLFRVILIPFFVVVFYLPFAWAPMVSALIFCIAAI
                     TDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIARE
                     IIISALREWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVA
                     AVLTLWSMLQYLSAARGDLLDQ"
     gene            complement(1232..3064)
                     /gene="uvrC"
                     /locus_tag="OQP62_004199"
     CDS             complement(1232..3064)
                     /gene="uvrC"
                     /locus_tag="OQP62_004199"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HCS1723583.1"
                     /translation="MSEIFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLS
                     SYFRSNLASRKTEALVAQIQHIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSY
                     PFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR
                     NRSRPCLQYQIGRCLGPCVAGLVSEEEYTQQVEYVRLFLSGKDDQVLTQLIARMEKAS
                     QDLAFEEAARIRDQIQAVRRVTEKQFVSNAGDDLDVIGVAFDAGMACVHVLFIRQGKV
                     LGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS
                     ELAGRRIHVQTKPRGDRARYLKLARTNAATALVTKLSQQSTITQRLTALATVLKLPAI
                     KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNIAGITPGDDYAAMNQVLRRRY
                     GKAIEESKIPDVILIDGGKGQLAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLET
                     LFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGP
                     KRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH"
     gene            complement(3061..3717)
                     /gene="uvrY"
                     /locus_tag="OQP62_004200"
     CDS             complement(3061..3717)
                     /gene="uvrY"
                     /locus_tag="OQP62_004200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrY/SirA/GacA family response regulator
                     transcription factor"
                     /protein_id="HCS1723584.1"
                     /translation="MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCR
                     TNAVDVVLMDMNMPGIGGLEATRKIARSTADIKVIMLTVHTENPLPAKVMQAGAAGYL
                     SKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPAKTETPFASLSERELQIMLM
                     ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLTSQ
                     "
BASE COUNT          916 a         1069 c          917 g          904 t
ORIGIN      
        1 ggtcggtagc acataactgt tgtactggca gaaatgccgc taccgatgtt ttttactgtg
       61 tatcgcgctg gagagttcac gctcgcggtc ggcatacaaa ctgaaagcac aaaaaaacca
      121 cccgtaggtg gtttcacgac actgcttatt gctttgatta ttcttgtctt tcccatggta
      181 cccggagcgg gacttgaacc cgcacagcgc gaacgccgag ggattttaaa tcccttgtgt
      241 ctaccgattc caccatccgg gctcgggaaa aattggaggc gcgttccgga gtcgaaccgg
      301 actagacgga tttgcaatcc gctacataac cgctttgtta acgcgccaaa tttttttggc
      361 ttttcagcca gcatccgctt tacgccaatg cttttaaact ggagcgggaa acgagactcg
      421 aactcgcgac cccgaccttg gcaaggtcgt gctctaccaa ctgagctatt cccgcagtat
      481 caagcaactt tgttaatcgc ttgattttgt tatcgtctgg caatcagtgc tgccgtccga
      541 tgcgttgcat tctacttacc tgacgcactg agtcaacgat atttttcgtc actcacgatc
      601 gtttgctgaa atttgcggcg aaacgatcac tgatcaagca aatctccgcg tgcagcgctc
      661 aaatattgca acatggacca caatgttagc accgctgcga caaagaaaag cgcgatcccg
      721 gcatactcta cccagatatt cggacgccac aagagccacg ccagcgccac catctgcgcg
      781 gtagttttga ctttaccgat ccaggagacc gctacactac tgcgtttgcc cagctccgcc
      841 atccattcac gcagagcaga gataataatt tcgcgggcga tcatcgtcgc cgcaggtaac
      901 gtcacccacc agctatgata atgctcggtg accagcacca tggcgatcgc caccagcacc
      961 ttgtcggcga cggggtcgag gaaagcgccg aaacgcgtac tctggttcca gcgtcgcgcc
     1021 agaaagccgt caaaccagtc ggtaatcgcg gcaatacaga aaatcagcgc gctgaccatc
     1081 ggcgcccagg cgaacggcaa ataaaacacc acgacaaaga atggaatcag gatgacgcga
     1141 aacagcgtga gcaacgtagg gatattaaat tgcatagtga cgggtaacta tctgttgtca
     1201 gtgaaattac ccctatgttg ctacagtggc ctcaatgttt caacgaccag aagatctttt
     1261 ctgccagacc ttgcgaaata cccggcactt ttgcaatttc ttctacgctg gcgttacgta
     1321 atccttgcaa accgcccata tatttcagca gcatctggcg acgtttaggc ccaacgcctt
     1381 caatagtttc cagcgtactg gtatttttaa ccttcgcgcg ttttttacgg tgcccgccga
     1441 tcgcgtgatc gtgcgactca tcgcgaatat gctgaataac atgcagcgcc ggcgagtccg
     1501 gcggcaggct aaacccctcg ccttccggtt caaaaaagag tgtttccaga ccggcttttc
     1561 tgtccgcgcc tttggcgacg ccgagcagca aaggacgatg cttatcccag gggacatcca
     1621 gctcagcgaa aacggctttc gcctgggcga gctgcccttt tccgccgtcg atcagaataa
     1681 catccggaat cttactttct tctatggcct tgccataacg ccgacgtagc acctgattca
     1741 tcgccgcgta gtcatcaccc ggcgtgatgc ccgcgatatt ataacgacga tactcggcgc
     1801 gtaacggccc gttagcgtca aataccacac aggatgcgac cgtttgctcc cccatggtat
     1861 ggctgatgtc aaaacattcc atccgcttga tcgcaggaag ttttaatacc gtcgccagcg
     1921 cggtcaaacg ctgcgtgatg gtggactgct gcgaaagttt agtgactaag gccgttgccg
     1981 cgttggtccg cgctagcttg agatagcggg cgcgatcgcc gcgcggtttt gtctggacat
     2041 gaatacgccg tccggcaagc tccgacaacg aatcggccag cagcgtttta tcgctcagat
     2101 taaaatcgag tagtatctcg cccggtagcg tgcgcatctg gctaccctgc aggtaaaact
     2161 gcccgacaaa ggtttccacc acttcgccca gttccgtacc gccaggcact tttggaaaat
     2221 agctgcggct gcccagtacc ttaccctggc gaataaacaa cacatgcaca caggccatac
     2281 ccgcatcaaa agccacaccg ataacgtcga gatcgtcgcc cgcattggag acaaactgtt
     2341 tctccgtgac ccggcgtacc gcctggatct gatcgcgaat acgcgccgcc tcttcaaatg
     2401 ccaaatcctg gctggccttt tccatccggg caatcagctg tgttaagacc tggtcgtcct
     2461 tgccggacaa aaacaaccgg acatactcca cctgttgcgt gtactcctcc tcgctgacca
     2521 gtcctgcaac gcaggggcct aagcagcggc caatctggta ttgcaggcaa ggacgcgagc
     2581 ggttgcgata cacgctgttt tcgcactggc ggatagggaa aattttctgt aacagcgcca
     2641 gcgtttccct aacggcatag ccattaggaa atggaccgaa gtactcgcct ttcgcatgtt
     2701 tggcgccacg gtgcatcgcc agacgcggat gggtatcgcc gctcagaaaa ataaaaggat
     2761 aggatttatc atcacgcaac aacacgttgt aacgcggttg atacaacttg atgtaattat
     2821 gctcaagcag cagcgcttcc gtttcggtat gcgttaccgt gacatcaatg tgttgaattt
     2881 gcgcaactag cgcttcggtt ttacgcgaag ccaggttgct gcgaaagtag ctggaaagac
     2941 gctttttcag gtcttttgct ttaccaacat agataaccgt accgccggcg tcatacatac
     3001 gatagacacc gggttggctg gtaacggttt tcaggaacgc ctttgcgtca aatatttcac
     3061 tcactggctt gttaacgtct ccgcattaca caggccatgg cggattgcca ggtgagtcag
     3121 ctcaacatca ccatgaatgt ttaatttact gaacatacga tagcgatagc tgttcaccgt
     3181 tttaggactg agattcagct gttctgaaat ctcattgacc ttctggccct tggtgatcat
     3241 cagcataatc tgcaactcgc gttcagacaa actggcgaac ggcgtttccg tttttgcagg
     3301 ctcaatctga ctgagcgcca tctgttgagc gatatcggag gcgatataac gttgtccgga
     3361 atacaccgaa cgaatagcgc tcaccacctc ctgaggcgca gcgcctttgc tgagatagcc
     3421 agctgcgcca gcctgcatca ctttggcggg caacgggttc tccgtatgga cggtcagcat
     3481 gatcactttg atatccgctg tcgatcgggc aattttacgc gtcgcctcaa ggccgccaat
     3541 accgggcatg ttcatatcca tcagcacgac gtcaacggcg ttagtacggc accattttac
     3601 cgcatcctct ccgcagcacg cttcaccgac aactttaatg ccctttatat cttcaagaat
     3661 gcgtcgtatc cctgcgcgca ccagttcgtg gtcatcaaca agaagaacgt tgatcaaagg
     3721 aatatctcca gaatagggat aacgctactg atagttaatc gcccttatat tagctggttt
     3781 tatctcaact ttgaaacgta aaaaaa
//
LOCUS       DAJVSD010000318         3716 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.318, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000318 DAJVSD010000000
VERSION     DAJVSD010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3716
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.318"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            7..1668
                     /gene="dpiB"
                     /locus_tag="OQP62_004201"
     CDS             7..1668
                     /gene="dpiB"
                     /locus_tag="OQP62_004201"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase DpiB"
                     /protein_id="HCS1723585.1"
                     /translation="MSYQKNKKLFPFFRQLAFPLRIFLLILVVSVFIVAALAQYLSAS
                     FEDYLASHVRDMAMNQAKIIASNDSIIAAVKNRDYKRLAIIANKLQRGTDFDYVVIGD
                     RHSIRLYHPNPEKIGYPMQFTKPGALERGESYFITGKGSIGMAMRAKTPIFDNEGNVI
                     GVVSIGYLVSKIDSWRLDFLLPMAGVFVLLLVVLMLLSWFFAAHIRRQMLGMEPKQIA
                     RVVRQQEALFSSVYEGLIAVDPEGHITAINRNARKMLGLPSPGRQWLGKLIAEVVNPA
                     DFFTCQIAERRQDVMANFNGLSVIANREAIRSGEELLGAIISFRSKDEIATLNAQLTQ
                     IKQYVESLRTLRHEHLNWMSTLNGLLQMKEYDRVREMVQGESQAQQQLIDSLRGAFAD
                     RQVAGLLFGKVQRARELGLKMVIVPGSQLHQLPEGLDSTEFAAIVGNLLDNAFEASLR
                     TQEGDNTIELFLSDEGDEVVIEVADQGCGVPEALREKIFEQGVSTRADEPGEHGIGLY
                     LIASYVGRCGGVITLEDNDPCGTLFSLFLPKVKKNDDRTINPIDR"
     gene            1637..2317
                     /gene="dpiA"
                     /locus_tag="OQP62_004202"
                     /gene_synonym="citB"
     CDS             1637..2317
                     /gene="dpiA"
                     /locus_tag="OQP62_004202"
                     /gene_synonym="citB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator DpiA"
                     /protein_id="HCS1723586.1"
                     /translation="MTEPLTLLIVEDETLLAEMHAEYIRHIPGFNQIWLAGNLAQARM
                     MIDRFKPGLILLDNYLPDGKGITLLHELMQSRYPGGVVFTTAASDMETVAEAVRSGAF
                     DYLVKPIAYERLGQTLTRYQQRRRMLASADSASQKQIDEMFNAYARGEPKGDLPTGID
                     ALTLNAVMKLFADPTVRHTAETVAQALTISRTTSRRYLEYCASRHLIVAEIIHGKVGR
                     PQRIYHGG"
     gene            complement(2371..>3716)
                     /gene="dcuC"
                     /locus_tag="OQP62_004203"
     CDS             complement(2371..>3716)
                     /gene="dcuC"
                     /locus_tag="OQP62_004203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuC"
                     /protein_id="HCS1723587.1"
                     /translation="VGVARYIIKGYSATGVLFVGGLVLLIISALMGHKVLPASETSTG
                     YTATDIVEYIKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMVVKLASKPLQYINSP
                     YLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRGAAAAICASPAAIIL
                     SPTSGDVVLAAKAAEMPLIDFAFKTTLPISIAAIIGMAIAHFFWQRYLDKKENISHEM
                     LDVAEITTTAPAFYALLPFTPIIGVLIFDGKWGPQLHIITILVICMLLAAVLEFVRGF
                     NTQNVFSGLEVAYRGMADAFAGVVMLLVAAGVFAQGLSTIGFIQSLISIATSFGSASI
                     ILMLVLVILTMLAAMTTGSGNAPFYAFVEMIPKLAHSSGINPAYLSIPMLQASNLGRT
                     ISPVSGVVVAVAGMAKISPFEVVKRTSVPVIVGLLIVIIATEIMVPGASSAVTGG"
BASE COUNT          929 a          927 c         1051 g          809 t
ORIGIN      
        1 accttaatgt cctatcagaa aaataaaaag ctgtttcctt tttttcggca actcgcgttt
       61 ccgttacgta tttttctgct cattctggtg gtttctgttt tcatcgtggc agcgttagca
      121 caatatttgt ctgccagttt cgaagattat ctggcgtccc atgttcgtga catggcgatg
      181 aatcaggcaa aaattattgc ttctaacgac agcattatcg ctgccgtaaa aaaccgggac
      241 tataaacgcc tggcgataat tgcgaataaa ctgcagcgcg ggacggattt tgactatgtg
      301 gtgataggcg atcgccactc gatccggctt taccatccga atccggaaaa aatcggctat
      361 cccatgcagt ttacgaaacc cggcgcgctg gaaagaggag aaagttattt cattaccggt
      421 aagggctcaa tagggatggc gatgcgcgcc aaaacgccta tctttgacaa cgaaggcaac
      481 gtgatcggcg ttgtttcaat tggctatctg gtcagtaaaa tcgactcctg gcggctggac
      541 ttcttattac cgatggcggg ggtttttgtc ctgttgctgg tggtattaat gctgctttcc
      601 tggtttttcg ccgcgcatat ccgccgacaa atgctgggca tggagccgaa acagattgcg
      661 cgcgtggtac gccagcagga ggcgttattt agctcggttt atgaagggct gatcgccgtt
      721 gatccggagg gacatatcac cgcgattaac cgcaatgcga gaaaaatgtt ggggctgccg
      781 tcgccggggc gtcagtggct gggcaagctg atagcggaag tcgtcaatcc ggcagacttt
      841 tttacctgcc agatcgcaga aagacgccag gacgtgatgg ccaacttcaa tggcctgagc
      901 gtcatcgcca atcgtgaggc tatccgttcc ggcgaggagc tgctgggcgc tattattagt
      961 tttcgcagca aagatgaaat cgcgacgttg aacgcgcagc taacccagat taaacagtat
     1021 gttgagagcc tgcgcacgct acgccatgag cacctgaact ggatgtcgac tctgaacggc
     1081 ctgctgcaaa tgaaagagta tgatcgggtc agagagatgg tgcagggcga atcgcaggcg
     1141 cagcagcaac ttattgatag tttacgcggc gccttcgccg atcgtcaggt ggccggtttg
     1201 ctgtttggca aagttcagcg cgcgcgtgaa ctggggctca agatggtgat tgttcccggc
     1261 agccagttac atcaactgcc ggaggggctg gatagcacgg agttcgccgc catcgtcggg
     1321 aatctgctgg ataacgcgtt tgaggcgagt ttacgtacac aggaaggcga caataccatc
     1381 gaacttttcc tgagcgacga gggcgacgag gtggtgatag aggtcgccga ccagggctgc
     1441 ggcgttcctg aagcgctgcg ggaaaaaatt tttgagcagg gcgtaagtac ccgagctgac
     1501 gaacccggtg agcatggtat cgggttatat ctgattgcaa gttatgtggg gcgctgtggc
     1561 ggggtcatta cgctggaaga caatgatcct tgtggcacct tattttcttt attccttccg
     1621 aaagtgaaaa aaaacgatga cagaaccatt aaccctattg atcgttgagg atgaaacgct
     1681 gctggcggaa atgcacgcag aatatatccg ccatattcct ggctttaacc agatatggct
     1741 ggcgggcaat ctggcgcagg cgagaatgat gattgaccgg ttcaaacctg gattaattct
     1801 gttggataat tatctgccgg atgggaaggg gattacgctg ctgcatgaat taatgcagtc
     1861 gcgctatccc ggcggcgtcg tgtttacgac cgccgccagt gacatggaga cggtagcgga
     1921 agcggtacgt agcggcgcgt ttgattatct ggtcaaacct attgcttatg agcgtttggg
     1981 gcagacgctg acccgttatc aacagcgcag acgtatgctg gcgagcgcgg atagcgcaag
     2041 ccagaagcag atagatgaaa tgttcaacgc ctatgcgcgc ggcgaaccga aaggggattt
     2101 gccgacaggt attgatgcct taacccttaa tgcggtgatg aagctgtttg ccgatccaac
     2161 cgtacgccat acggctgaaa cggtcgcgca ggccttaacg ataagccgca ccacatcccg
     2221 acgctacctg gaatattgcg cgagtcggca cctgattgtc gcagagatta ttcatggcaa
     2281 agtgggcagg ccgcagcgta tttatcacgg cggctaagcc cgctttaaga tgccggagcg
     2341 atgttttccc tcgccccggc ttaccggcta tcagccgccg gtgacggcgg aagaggcgcc
     2401 tggcaccata atttccgtag cgataatgac gatcaacaga ccgacgatga ccggaacgga
     2461 cgtgcgcttc accacttcaa acggtgatat tttagccatc ccggcgacag cgaccacgac
     2521 gccggagacc ggcgaaatcg tgcgccccag gtttgaggct tgcagcattg ggatggataa
     2581 ataggctggg ttgataccgg aggagtgcgc cagtttaggg atcatctcaa caaaggcgta
     2641 aaaaggcgca ttgcctgaac cggtggtcat cgcggccagc atggttaaaa tcactaagac
     2701 cagcatcaga ataatgctgg cggacccaaa agaagtggca atcgagatca gactttggat
     2761 aaagccaatg gtgctcagcc cctgggcgaa aacgcccgcc gcgaccagca gcatcacaac
     2821 gccggcaaac gcatccgcca tgccgcgata agccacttcc aggccggaaa acacattttg
     2881 cgtgttgaag ccgcgcacga attccagcac ggcggccagc agcatacaga tgaccagaat
     2941 ggtaataatg tgcaactgcg gcccccattt accgtcaaaa atcagtacgc cgataatggg
     3001 cgtgaacggc aaaagggcat aaaacgccgg ggccgtggtg gtaatctccg ccacgtccag
     3061 catctcatgt gaaatgttct cttttttatc cagatagcgt tgccagaaaa aatgcgcaat
     3121 cgccataccg ataatggcgg cgatggaaat cggcagcgtg gttttgaacg cgaaatcgat
     3181 taacggcatc tccgccgctt ttgcggctaa aaccacatcg ccagacgttg gcgagaggat
     3241 gatggcggcc ggcgaagcgc aaatagccgc cgccgcgccg cggctaatgc cgacgttgac
     3301 catcaccggg aagagagtag ccatgagcag tacgccaagc cccgtcgcgg aagagacggc
     3361 cagcgacatc aggcaggcga caaaataggc ggcaatcatc aacaggtagg gcgagtttat
     3421 atactgtaaa ggtttcgacg ccagcttcac gaccatatca tttgcgccga tatgcgtcat
     3481 ataggcggca aagccgcaca gcatcatgat catcatgcca agatcgccgc cgcgactcat
     3541 aagcaaaatt ttgatgtatt caacaatatc tgttgcggta tagccggtac tggtttcgct
     3601 ggcaggtaat accttatgcc ccatcagcgc gctgataata agcagaacca gaccgccgac
     3661 aaataaaacg ccagtggcgg aatatccctt aatgatgtag cgtgctacac ccacaa
//
LOCUS       DAJVSD010000319         3706 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.319, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000319 DAJVSD010000000
VERSION     DAJVSD010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3706)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3706)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3706
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.319"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            85..918
                     /locus_tag="OQP62_004204"
     CDS             85..918
                     /locus_tag="OQP62_004204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1723588.1"
                     /translation="MAKPSTSLLKRRLDIAEIVRKNGEIKVDDLAEMLSVSGVTIRND
                     LNYLEQQGYLKRSFGGAIYTAQPVRAAVSHEVVQSQALEHSVELELAKQVARLVCDDD
                     TVFLGAGEVLRKALPFLGDYRDLCLIINDLSHVAPARDYIDGEIVLLGGVLGRSGQAL
                     GGEIAIQSLQQFQPSCCLVMVDHISEDGTLNVKNESAAALLSECLRLSGQSIAVVAQR
                     PIHDIARYPVGKLNTLSAIITPQIVAAEYHSRFLADGLTNSYTNNECLTWINPTLHQA
                     R"
     gene            929..1876
                     /locus_tag="OQP62_004205"
     CDS             929..1876
                     /locus_tag="OQP62_004205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1723589.1"
                     /translation="MNITIATLSELLVEFLAKKENQGFSSPGEFWGPYPSGAPAIFAD
                     QVAKLGFRSLLFSCVGNDAFGVMNITRLSRDGVNVQGISVLPNATTGSAFVSYRSQAQ
                     RDFIFNMPDSACGLLSADHLDETLLRQYRHFHIMGSSLFSFRLIDAVRKAISIVKENG
                     GTISFDPNIRKEMLKIREMSQAFEYILDYTDFFLPSDGELDYFGLSKSRDEEKIVARL
                     HKRGIAHVIIKRGARGASYYSKDEQHHVAGYPVKVVDPTGAGDCFGATFVSLFLAGYS
                     VPDALAHANAAGSLAISARGPMEGTSTLAQIKELMRQQN"
     gene            complement(2116..3687)
                     /gene="garD"
                     /locus_tag="OQP62_004206"
     CDS             complement(2116..3687)
                     /gene="garD"
                     /locus_tag="OQP62_004206"
                     /EC_number="4.2.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactarate dehydratase"
                     /protein_id="HCS1723590.1"
                     /translation="MANIEIRQESPSAFYIKVHETDNVAIIVNDHGLKAGTRFPDGLE
                     LTEHIPQGHKVALTDIPAHGEIIRYGEVIGYAVRDIPRGSWIDESLVELPKAPPLNTL
                     PLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKVIERDL
                     LPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNIALNPNFGGEVMVIGLGCEKL
                     QPERLLEGTEDVPAIAVENASIVRLQDEQHVGFKSMVDDILRVAERHLTKLNQRQRET
                     CPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTP
                     RAINEAVGKRLLDEMAWYDNYLDMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGK
                     SAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVP
                     VIKMATRTELANRWYDLMDINAGTIATGEETIEDVGWKLFHFILDVASGRKKTFSDQW
                     GLHNQLAVFNPAPVT"
BASE COUNT          864 a          927 c          999 g          916 t
ORIGIN      
        1 aattgacatc ccctgtcaga agtttaaaaa tgaaagttaa agcacgggat aacttcccga
       61 cgaagcggaa aaaaagggta tgttgtggca aaaccatcta ccagcctgtt gaaaaggcgt
      121 ctggacattg ccgaaatcgt ccgtaaaaac ggcgaaataa aagtagacga tttggctgaa
      181 atgttatcgg tttcaggggt aacgatccgt aatgatctca attacctgga gcagcaaggc
      241 tatctgaaac gctcctttgg cggagcgatt tacacggccc aacccgtcag agcagcggta
      301 agccatgaag tggtgcagtc gcaggcgtta gagcatagcg tcgagcttga actggctaag
      361 caagttgccc gtctggtctg cgacgacgat accgtgtttc tgggggccgg agaggtgttg
      421 cgtaaagcgc ttcctttcct gggcgattat cgggatctgt gccttatcat caacgatctt
      481 agccatgttg caccggcccg tgattatatc gatggtgaaa ttgtgttgtt gggcggtgta
      541 ctggggcgca gtggtcaggc gctggggggc gaaatcgcca tccaatcttt gcaacaattt
      601 caaccgtcat gttgtctggt gatggtggac catatcagcg aggatggcac gctcaacgtg
      661 aaaaacgaaa gtgcagctgc tttgctaagt gaatgcctgc gccttagtgg acagagtatt
      721 gccgtggtgg cgcagcgtcc gattcatgat atagcgcgtt atccggtagg aaaactgaat
      781 acgctgagcg cgattattac gccacagatt gtcgccgctg agtaccactc acggtttctg
      841 gccgacggct taaccaacag ctataccaat aacgaatgtc tgacctggat aaacccgacc
      901 ctgcatcagg caagatgaag gacaacgcat gaacataaca atcgcaacat tgagtgaatt
      961 gctcgtcgag tttctggcaa aaaaagagaa ccagggattt tcctcaccgg gggaattttg
     1021 ggggccgtat cccagtgggg cgcctgccat atttgccgat caggttgcta aacttggttt
     1081 tcgttcattg ttgtttagct gtgttggcaa cgatgccttt ggcgttatga atattacccg
     1141 attgtcgcgc gatggcgtaa atgtacaggg aatttccgta ctgccgaacg ccacaacagg
     1201 tagtgctttt gtcagctacc gaagccaggc ccagcgagat tttattttca acatgccgga
     1261 cagtgcgtgc ggtttgctga gtgccgacca ccttgatgaa acattactca ggcaatatcg
     1321 ccactttcat attatgggat cgtcattatt ttcctttcgt ttgatcgatg ccgtacgcaa
     1381 ggcgattagc attgtaaaag aaaatggtgg cacaatttct ttcgatccta atatccgtaa
     1441 agagatgcta aagatccgcg aaatgtcgca ggcctttgaa tatattcttg attacacgga
     1501 tttcttcctg ccaagcgatg gcgaactgga ttatttcggc ctgagcaaat cccgcgatga
     1561 agagaaaatt gtcgcaaggc ttcacaagcg tggaattgcc catgtcatca ttaaacgtgg
     1621 cgcccgtgga gccagttact attcaaaaga cgaacaacat catgtggctg ggtatccggt
     1681 gaaggtggtt gatcctacag gcgctggcga ttgctttggc gcaacctttg tcagcctgtt
     1741 tcttgcggga tattccgtac ccgatgcttt agcccatgct aatgccgcag gatcgctggc
     1801 tatctctgcg cgtgggccga tggaaggcac gtccacgctg gcacaaatta aagaattgat
     1861 gaggcagcag aattaagtaa aggtgattaa taggctgtcg ttatattcga catacctcaa
     1921 attgcatgtg ctgcgactca aattagtgag aaacgtaagg ttgcgcctgg catagaattt
     1981 caatttattg aatttgaatg gttttatggt gggttaggtg tttttgccat atccggtatg
     2041 aacatggcgc agtttatcaa acatatgaaa acatggccct taagccatgt tttgcgaggc
     2101 gctttccaga atagatcagg tcacaggtgc ggggttaaac actgccagct ggttatgcaa
     2161 tccccattga tctgagaaag tctttttccg gccgctggcg acatcgagaa taaagtgaaa
     2221 tagcttccag cccacatctt cgattgtctc ttcacccgtg gcgatggtgc ctgcattgat
     2281 atccattaag tcataccagc ggttcgccag ctcggtacgc gtcgccattt taatgaccgg
     2341 caccgccatc agcccgtacg gcgtgccgcg tccggtggta aagacctgta cggtaatgcc
     2401 ggaagcgacc tgctgcgtgc cgcagacgaa atcgctggcg ggcgtcgcgg cgtaaatcag
     2461 gccgcgtttg gtggggcgct ggcccggcga caatacttcg acaatggcgc tcttacccga
     2521 tttagcgata gagcccagcg ctttttccac gacgttcgcc aggccgcctt ttttgttgcc
     2581 gggggacggg ttagcgctgc gatcggtttt ccccatatca aggtagttat cgtaccaggc
     2641 catttcatcc agtaggcgtt tacccacggc ttcgttgatg gcgcgcggcg tcagaagatg
     2701 aatggcatcg cgcacttcgg tgacctccga gaacatgacg gtcgcgccgc agcgtaccag
     2761 cagatcggaa gcataaccca ccgccgggtt tgccgtgacg ccagaaaacg catcgctgcc
     2821 gccgcattgc atcccgacga ccagctcgga ggccgggcag gtttcgcgct ggcgctggtt
     2881 cagtttcgtc agatggcgtt cggcgacccg caaaatatcg tcgaccattg atttaaagcc
     2941 aacatgctgc tcgtcctgta aacgcacaat actggcgttt tcaacggcga tggcggggac
     3001 atcctcggtg ccttccagca gtcgttccgg ctgcagtttt tcgcaaccga ggccaatcac
     3061 catcacttcg ccgccaaaat tggggttgag cgcgatatta tgaattgtgc gaatcggcac
     3121 gaccgccgcc ggcgcgttga ttgccacgcc gcagccgtac agatggttta gccctacaac
     3181 gccatcgaca ttcgggtatt tgggcaggag atcgcgctca atcactttca ccacataatc
     3241 gaccacgccc gccacacagt gcacgctggt ggtaatgcca agcagatttt tggtgccgac
     3301 gctgccatcg gcgttacgat agccctcaaa cgtgtagcct tccagcggcg gcagcggttc
     3361 cggtactttg gtcgccagcg gtagcgtatt cagcggcggc gcttttggca gttcaaccag
     3421 cgactcgtcg atccagcttc cgcgcgggat gtcgcgtacc gcataaccga tgacttcgcc
     3481 ataacggatg atttcgccgt gagcggggat atccgtcaga gcgactttat ggccttgcgg
     3541 aatatgttca gtcagttcca ggccatccgg aaaacgtgtt ccggctttaa ggccgtggtc
     3601 attaacaata attgcgacat tatcggtttc atgtactttt atataaaacg ccgatggcga
     3661 ttcctggcga atttcgatat tggccattgt tcaacattct ccagcc
//
LOCUS       DAJVSD010000320         3657 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.320, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000320 DAJVSD010000000
VERSION     DAJVSD010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3657)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3657)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3657
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.320"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..577)
                     /gene="lipB"
                     /locus_tag="OQP62_004207"
     CDS             complement(<1..577)
                     /gene="lipB"
                     /locus_tag="OQP62_004207"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415163.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HCS1723591.1"
                     /translation="MYQDKILVRQLGLQPYEAISQAMHNFTDMRDENSHDEIWLVEHY
                     PVFTQGQAGKAEHILMPGDIPVVQSDRGGQVTYHGPGQQVMYVLLNLKRRKLGVRDLV
                     TLLEQTVVNTLAEMGIEAHPRADAPGVYVGEKKICSLGLRIRRGCSFHGLALNVNMDL
                     SPFLRINPCGYAGMEMAKITQWKEDATTDNIA"
     gene            complement(677..940)
                     /locus_tag="OQP62_004208"
     CDS             complement(677..940)
                     /locus_tag="OQP62_004208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HCS1723592.1"
                     /translation="MKTKLNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYS
                     PTVKPSSKGNYHSVSITINATHIEQVETLYEELGNIDIVRMVL"
     gene            complement(1048..2259)
                     /gene="dacA"
                     /locus_tag="OQP62_004209"
     CDS             complement(1048..2259)
                     /gene="dacA"
                     /locus_tag="OQP62_004209"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase DacA"
                     /protein_id="HCS1723593.1"
                     /translation="MKTTFSARFMQRMALTTALCATFISTAHADDLNIKTMIPGVPQI
                     DAESYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGN
                     DAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVG
                     LMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFT
                     FNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKG
                     RETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNTDRASLGVDKDVYLTIPRGRM
                     KDLKASYVLNTAELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIID
                     YIKLMFHHWFG"
     gene            complement(2398..3531)
                     /gene="rlpA"
                     /locus_tag="OQP62_004210"
     CDS             complement(2398..3531)
                     /gene="rlpA"
                     /locus_tag="OQP62_004210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic peptidoglycan transglycosylase RlpA"
                     /protein_id="HCS1723594.1"
                     /translation="MHKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVE
                     ISGAEPRYEPLNPTANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEM
                     FDPMQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGLYGTDRVISLSRAAADRLNT
                     SNNTKVRIDPIIVAPDGSLSGPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQG
                     DVLPVSNSTLKSDDTTGAPVSSSGFLGAPTTLAPGVLEGNEPTPAPQTAPVSAPVTAP
                     ATATPVSAPAAAAPVSAPVSAPAAAASGRFVVQVGAVSDQTRAQQYQQRLSQQFSVPG
                     RVIQNGAVWRIQLGPFASKAEASALQQRLQTEAQLQSFIASAQ"
     gene            complement(3542..>3657)
                     /locus_tag="OQP62_004211"
     CDS             complement(3542..>3657)
                     /locus_tag="OQP62_004211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004885876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HCS1723595.1"
                     /translation="VPLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV"
BASE COUNT          827 a          970 c          987 g          873 t
ORIGIN      
        1 gcgcaatatt atctgtggta gcgtcttcct tccactgcgt tattttagcc atttccatgc
       61 cggcataacc acacgggttg atgcgtagga aaggagaaag atccatgtta acgtttagcg
      121 ctaaaccgtg gaatgagcag ccgcgacgga tacgtaaacc cagcgagcag attttctttt
      181 cacccacgta gacgcccggc gcatcggcgc gcggatgcgc ctcaataccc atttcagcca
      241 gcgtattcac cacggtctgt tcaagtaggg tgactaaatc acgcacgccc agtttacgtc
      301 gtttcaggtt aagtaaaacg tacattacct gttggcccgg accatgatag gtcacctgtc
      361 ctccacgatc gctctgcaca acgggaatat cgccaggcat caatatatgt tccgctttac
      421 cggcctggcc ctgggtaaac accgggtaat gctcaaccaa ccagatttca tcatggctgt
      481 tttcatcgcg catatcggta aagttatgca tggcctgaga gatagcttca tagggctgaa
      541 ggccgagctg gcggacaagg attttatcct gatacaaaac ggcatctccg tagagaatga
      601 aaaaagagag gaaagtatat cacagcgggg gaggcgggga gttacccgga taagaccggg
      661 taaccgtctg gatgtattac aataccattc gcacgatatc aatattaccc agttcttcgt
      721 acaacgtttc aacctgttca atatgggtgg cattaatggt gatagagacc gagtggtagt
      781 tgcctttgct gctcggtttt accgtcggag agtaatcacc aggcgcatgg cgctgtacca
      841 cttcaaccac ctgatcaacc agctcaggta acgcctgccc cattactttg taagtaaatg
      901 gcgtagggaa ttcaagcagt tcgttaagtt tggttttcat gtcagctccg gcattacgta
      961 aaaaaataac aactcccgcc acagggcggg agttttactg atgcatagta tatggggacg
     1021 aaaatcacac tttcaagcgt tcaattttta tccaaaccag tgatggaaca ttaatttaat
     1081 gtaatcaatg attttaccga agaagttccc ttccgggatc tcttgcagta cgaccagcgg
     1141 acgctgctcg atggttttac cgtccagctg gaagttgatg gtgccgacca cctggttttt
     1201 ctgcagcggc gcgtgcagtt ctgcggtatt cagtacatag ctcgctttca aatctttcat
     1261 gcgaccgcga gggatcgtca ggtaaacgtc tttatcgacg cccagcgagg cgcgatcggt
     1321 attaccaaac caggcgggtt cagaggcgaa ctctttacca gccttcagcg gattaacggt
     1381 ttcaaagaaa cggaagcccc acgtcagcag ttttttgctt tctgtttcac ggcctttata
     1441 ggtccgtccg cccattacgg cggaaatcaa tcgcatctgg ccttcggttg cggaagcgac
     1501 cagattatag cccgctttgc tggtatggcc ggttttgatg ccgtccacat tcaggctgtt
     1561 atcccacagc agaccgttac ggtttaactg gcgaatgccg ttaaaggtga actctttttc
     1621 tttataaacg gcatattcgt tcggcacatc tcgaattaac gcctggccaa tcagcgccat
     1681 atcgcgagct gaactgtatt gtccgtcggc gtccaggccg tgtacggtct ggaagtgggt
     1741 atttttcagc cccaacgcgt tcacatagct gttcatcagc ccgacgaaag catcctggct
     1801 accggcggcg aaatcagcca tcgccacaca ggcgtcattg ccggattgca gattgatgcc
     1861 gcgtatcaac tgagagaccg gtacctgcat tcccggtttg aggaacatca gcgaagagcc
     1921 tttaaatacc ggattgccgg tggcccaggc gtcattaccg acggtaacca ggtcggtttc
     1981 tttaaattta cccgctttca ttgcctgtcc gatgacgtaa ctggtcatca tcttcgtcag
     2041 actagccggg tcgcgacgtt cgtcggcgtt ttgttccgcc agaactttgc cggagttgta
     2101 gtcgatcagg atgtaggatt ccgcatcgat ctgcggaaca cccgggatca tagttttgat
     2161 attcaggtca tcggcatgtg cggttgagat aaacgtggca caaagcgccg tggtgagcgc
     2221 catgcgctgc ataaaacgag cggaaaaagt ggtcttcatg gtctgaacta cgacgtccgt
     2281 gatgaaatta aaaaagagcc ctactatagc aaaagcataa ctggcaggca tctgactttc
     2341 cgcgtgactt tgttaatgtc atttacagaa attgacagta cagatacctg caatcggtta
     2401 ctgcgcgctg gcgataaagg actgtaattg tgcttctgtt tgcaaacgtt gctgtaacgc
     2461 gctggcttcg gctttactgg caaaaggccc cagttgaata cgccagaccg cgccgttttg
     2521 tattacgcgt cctggtacgc tgaactgctg gcttaaacgc tgttggtact gctgcgcacg
     2581 cgtttgatcg ctgacggcgc cgacttggac gacgaaacga ccgctcgccg cggcggcagg
     2641 cgcgctcacc ggggcagata ccggggctgc ggcggcaggc gcgctcaccg gcgtcgcagt
     2701 cgctggagcc gtcaccggcg cggaaaccgg cgctgtctgt ggcgccggcg tcggttcatt
     2761 accctccagc acgccaggcg ccagcgtggt cggcgcgccg aggaagccgc tgctgctcac
     2821 cggcgcaccg gtggtatcgt cacttttcaa cgtggaatta ctgaccggaa gaacgtcgcc
     2881 ttgcggttgc gcaggcgctg aagaggcgct tcccatgccg ccgcttaaat cagggcgcgg
     2941 gggcagagcg taggtctgtt tcgccaccgt cgtacaggcc atccccgggc cggagagcga
     3001 accatccggc gccacgataa tggggtcaat ccgtacttta gtattattcg aggtattcag
     3061 acgatccgcc gctgcgcggg acagggagat gacccgatcg gtgccataga ggccgcgatc
     3121 gttaatacgc acgacgatca tgcgaccgtt ggccaggttg gtgattcgcg catagctggg
     3181 gataggcagt gtcggatggg cggcggtaag ctgcatcgga tcgaacatct ccccggaggc
     3241 ggttaaatta ctgccgggtt ccgcatcata aatagcggcc aggccagcct ggctaaagcg
     3301 ggacgggtcc tgaacgattt tataactttt accgtcacgc tgataatcct ggtttgcggt
     3361 cggattcaga ggttcataac gcggttccgc tccgctgatt tccacagtcg gaccattaca
     3421 taccgcaggt tgcggcgcga cggtggtttg ctgctgaccg ccgtcattag tacatgccgc
     3481 gagtagtact atccctgccg cgacgcagat tacaggcaac tgcttatgca ttgcgcaccc
     3541 cttatacgct tttcgacaac atttttctgt gggtgtggat cgacatcaca atcccgaacc
     3601 cggccatcag cacaatcagt gcggagcccc cgtagctgac caagggtaaa ggtactc
//
LOCUS       DAJVSD010000321         3637 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.321, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000321 DAJVSD010000000
VERSION     DAJVSD010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3637
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.321"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(158..1723)
                     /gene="ahpF"
                     /locus_tag="OQP62_004212"
     CDS             complement(158..1723)
                     /gene="ahpF"
                     /locus_tag="OQP62_004212"
                     /EC_number="1.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit F"
                     /protein_id="HCS1723596.1"
                     /translation="MLDTNMKTQLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIA
                     ELSDKVTFKEDNTLPVRKPSFLITNPGSQQGPRFAGSPLGHEFTSLVLALLWTGGHPS
                     KEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQ
                     NEITERNVMGVPAVFVNGKEFGQGRMTLTEIVAKVDTGAEKRAAEALNKRDAYDVLIV
                     GSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAH
                     VSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGE
                     DQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA
                     DQVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIG
                     LLPNTHWLEGVLERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYKQIIIATGEGAKAS
                     LSAFDYLIRTKIA"
     gene            complement(1965..2528)
                     /gene="ahpC"
                     /locus_tag="OQP62_004213"
     CDS             complement(1965..2528)
                     /gene="ahpC"
                     /locus_tag="OQP62_004213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003858764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit C"
                     /protein_id="HCS1723597.1"
                     /translation="MSLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFT
                     FVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTG
                     ALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAA
                     HPGEVCPAKWKEGEATLAPSLDLVGKI"
     gene            2968..>3637
                     /gene="dsbG"
                     /locus_tag="OQP62_004214"
     CDS             2968..>3637
                     /gene="dsbG"
                     /locus_tag="OQP62_004214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbG"
                     /protein_id="HCS1723598.1"
                     /translation="MIKRTLLLAMLPILAHAEELPALVKAIEKQSITILKSFEAPGGM
                     KGYLGKYQDMGVTIYLTPDGKHAISGYMYNEKGENLSNALIEKEIYAPAGREMWQKME
                     KASWILDGKKDAPVVLYVFADPFCPYCKQFWQQARPWVESGKVQLRTLLVGVIKPESP
                     ATAAAILAAKNPAKTWHDYEASAGKMKLEVPASIPPAQMKVINQNQQLMDDLGANATP
                     AIYYM"
BASE COUNT          871 a          977 c          907 g          882 t
ORIGIN      
        1 tctgttatta acagacggtt tcagagtatt gataatgaag aacgtgtttt acccggtggc
       61 gttccccagg cataaacacc gcaggcccga atagcttaca ctatcgggcc atttacgatg
      121 gccagttaac tggccttgca ggtgtgctta cttcttttta tgcgattttg gtgcgaatca
      181 gataatcaaa ggcgctcaac gaggctttcg ccccttcgcc tgtggcgatg ataatctgtt
      241 tgtaaggaac ggtggtgcaa tcgcctgcgg cgaagacgcc cttaacgctg gtttcacatt
      301 tggcgtcaat aatgatctcg cccatgcggt tacgctcaag cacgccttcc agccagtggg
      361 tattcggcaa aagaccaatc tgcacaaaaa ttcctgccag cgcgacgcta tgaatatcgc
      421 cgctgacacg gtcacgatac tccagtccca ccactttcga accgtcgccc ttcacttctg
      481 tcgtttgcgc attcaaaatg atatcgacat ttttcaggct acgcactttg tcctgtagca
      541 cctgatccgc cttcatctcc ggcgcgaact ccagcaacgt aacatgttct acaatacctg
      601 ccagatcgat agccgcttcg acgccggagt tgccgccgcc gatgaccgcc acacgcttgc
      661 ctttaaataa cggaccgtcg cagtgcgggc aataggtgac gcctttggtg cgatactgat
      721 cctcgcccgg cacattcata ttgcgccatt tcgcgccggt ggcgatgatg atactgcgcg
      781 ctttcaagac tgcgccggac gccgtttcaa tctgatgcag gccgccttct gtcgctgccg
      841 gaaccagttt acttgcgctc tggctgtcga taacgtcaac gtcgtaatcg ctgacatgcg
      901 ctttcagcgc gcccgccagt ttctggcctt cggttttcgg caccgagata tagttttcga
      961 tatccacggt atccagcacc tgaccgccga agcgctcgcc catcagaccg gtacggatgc
     1021 ctttgcgcgc cgagtagacc gccgccgccg cgcccgccgg gccggagccg acaatcagca
     1081 cgtcatacgc atcgcgtttg ttcagcgctt ccgccgcacg tttttctgcg ccagtatcca
     1141 ctttagcgac aatctcggtc agagtcatac gtccctggcc gaactcttta ccgttgacaa
     1201 acaccgccgg aacgcccatc acgttacgtt cggtgatttc gttctggaag gtgccgccat
     1261 caattgccgt atgtttaata cgcgggttca gcaccgccat caggttcagc gcctgcacta
     1321 cgtccgggca gttatggcag gagagtgaat aataagtttc gaattcaaaa tcgccgtcaa
     1381 tatcgcgaat ctgctccagc agcgactgcg cttcttttga cggatgaccg ccggtccaca
     1441 gcaacgccaa aaccagcgag gtaaattcgt ggcccagcgg agaaccggca aagcgcggcc
     1501 cctgctgaga gcctggattc gtaatcagga aagacggctt gcgcaccggc agagtattgt
     1561 cttctttaaa tgtgactttg tcggacagct cggcgatttc agccagcagt tccttgattt
     1621 ccgccgattt agcgctgtca tccagcgtgg caatcagctc aacaggtttg gtcagtttct
     1681 caaggtaagc cctgagctgg gttttcatat ttgtgtcgag cattcttctt ccctctctga
     1741 aaacatcatc atgcaagccg acttcgcggg actgcattaa tgcaacttgc gtcatggtgc
     1801 tgaaatgaaa tgggcgcgga tgcgcccatg actgaaacaa tttccaaagt atttcacgtc
     1861 agagtaaggc ggctagcctg agaatccccg ggagcttact gaagtaagtg accggggtga
     1921 gcaggcaacg ccaacgcagc tatggcgtga aagacgacgg aaatttagat tttaccgacc
     1981 aggtctaagg atggagccag agtcgcttca ccttctttcc atttcgccgg gcatacttcg
     2041 cctgggtgag cggcaacata ctgtgctgct ttaattttac gcagcaggtc agacgcgtca
     2101 cggccgatac cttcagcggt aacttcgatc gcctgaatga taccctgcgg gtcaacaaca
     2161 aaggtcgcac ggtctgccag gccttcatct tcacgcatgt tgtcgaagtt acgggtcagg
     2221 gcgccagtcg ggtcgccgat catcgcatat ttgatttttg cgatagtttc agagctgctg
     2281 tgccatgctt tgtgcgtaaa gtgagtatcg gttgagacgg aataaacgtc tacgcccagc
     2341 ttctgcagtt cttcgtaatg gtcggcaacg tcacccagtt cagtcgggca aacaaaggta
     2401 aaatcggccg ggtagaagaa gaagacgctc cagcggcctt cggtatcttt ctcggtgact
     2461 tcaatgaatt caccgttttt gaacgcctgg tttttgaaag gtttgatttt ggtgttaatt
     2521 aaggacatct atacttcctc cgtgttttcg ttgaggagta agttaacgaa attttgctga
     2581 ttcggctaat gcgtttccat tatcaaatca ataagcgtta actaacaacc cgattcgggc
     2641 gacattgtga acactgcgcc ctgtcagcca tctaaagtaa aaaggccgcc tgacaggcgg
     2701 ccccattacc tgaactaccc gtaggtaact tcagagccag tacgactcgt cttgcaaatg
     2761 gcaggcgtat tgcctgccac tcgaaatcca tagcgtatat gctggctaag tgttgcgctc
     2821 tacattacct taacaaaggc tgtaacagcg aaaaggatta catcacccca gcacagaaag
     2881 ggcaatcctg gcacgccagc tcttacctat gtctgcgata ggcatcatca ttaatactct
     2941 tttcgctttg atattaaaaa gaaaaatatg attaaacgta cattgctgct tgctatgctg
     3001 cccattctcg cccacgcgga agaactgcct gcgctggtta aagccattga aaaacagagc
     3061 ataacaatcc tgaaatcctt cgaggcgccg gggggcatga agggctatct cggaaagtat
     3121 caggatatgg gcgtcacgat ttacctgacg ccggacggta aacacgcgat ttccggctat
     3181 atgtataatg aaaaaggtga aaatcttagc aacgccctga tagaaaaaga gatctatgcg
     3241 ccagccggac gtgaaatgtg gcagaaaatg gaaaaagcgt catggatact cgacggtaaa
     3301 aaagacgcgc cggtggtgct gtatgtcttt gccgatcctt tctgccccta ttgtaagcag
     3361 ttttggcaac aagctcgtcc gtgggtcgaa tccggcaagg tacaattacg cacattactg
     3421 gtcggcgtga ttaaaccgga aagcccggcc acagccgcag cgattttagc cgcgaaaaac
     3481 ccggcgaaaa cctggcatga ctatgaagcc tccgcaggaa agatgaagct ggaggttcct
     3541 gcgtccatcc ccccggcgca gatgaaagtc attaatcaga atcagcagtt aatggacgat
     3601 cttggcgcta acgcgacgcc agcaatttat tacatga
//
LOCUS       DAJVSD010000322         3625 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.322, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000322 DAJVSD010000000
VERSION     DAJVSD010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3625
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.322"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            206..673
                     /locus_tag="OQP62_004215"
     CDS             206..673
                     /locus_tag="OQP62_004215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1723599.1"
                     /translation="MKIRRFSNGDEISLFRVFFSSVHTIASHYYTREQIDAWAPADID
                     LERWANHIKELQPFVVELDGEIAGYADVQPNGYIDHFFVSGTYSRQGVGTLLMNCIHE
                     EARQRGISELTSNVSKAAEVFFLRHGFHIVERGFPICRGVTLQNALMRKCLAK"
     gene            851..1138
                     /locus_tag="OQP62_004216"
     CDS             851..1138
                     /locus_tag="OQP62_004216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HCS1723600.1"
                     /translation="MLYKGCLMKSDVQLNLRAKESQRALIDAAAEILHKSRTDFILET
                     ACRAAENVILDRRVFNFNDEQYEEFINLLDAPVADDPVIEKLLARKPQWDV"
     gene            1126..1611
                     /locus_tag="OQP62_004217"
     CDS             1126..1611
                     /locus_tag="OQP62_004217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1723601.1"
                     /translation="MGRVTAPEPLSAFHQVAEFVSGEAVLDDWLKQKGLKNQALGAAR
                     TFVVCKKDTKQVAGFYSLATGSVNHTEATGNLRRNMPDPIPVIILARLAVDLSFHGKG
                     LGADLLHDAVLRCYRVAENIGVRAIMVHALTEDAKNFYIHHGFKSSQTQQRTLFLRLP
                     Q"
     gene            complement(1982..2521)
                     /gene="cueP"
                     /locus_tag="OQP62_004218"
     CDS             complement(1982..2521)
                     /gene="cueP"
                     /locus_tag="OQP62_004218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-binding periplasmic metallochaperone
                     CueP"
                     /protein_id="HCS1723602.1"
                     /translation="MSKSSWLLLLGLCASGSALAASSESAFLAQHGLAGKTVEQIVDT
                     IDQTPQSRPLPYSASITSTELKLSDGEQIYTLPLGDKFYLSFAPYEWRTHPCFNHSLS
                     GCQGEMPNKPFTVKVTDSKGAVIVQKEMQSYRNGFIGVWLPRNMEGTLEVSYNGKTAS
                     HAIATRDDSQTCLTELPLR"
     gene            complement(2697..2909)
                     /gene="cspA"
                     /locus_tag="OQP62_004219"
     CDS             complement(2697..2909)
                     /gene="cspA"
                     /locus_tag="OQP62_004219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone/antiterminator CspA"
                     /protein_id="HCS1723603.1"
                     /translation="MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKS
                     LDEGQKVSFTIESGAKGPAAGNVTSL"
     gene            complement(3122..3487)
                     /locus_tag="OQP62_004220"
     CDS             complement(3122..3487)
                     /locus_tag="OQP62_004220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000455793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator"
                     /protein_id="HCS1723604.1"
                     /translation="MEYKDPMFELLSSLEQIVFKDETRKITLTQKPNPFTEFEQLRRG
                     TGLKTDEFARALGVTVAMVQEWESKREKPTPAELKLMRLIQANPRLSKQLMEQFLPLS
                     VLTVLRKGRFPRPITGLEK"
BASE COUNT          974 a          791 c          869 g          991 t
ORIGIN      
        1 ccttagattt aacggactca gcccggttga ataccgccta aagagctatc caggcagaaa
       61 ttaacaaggt ctgtacaggg atgctatcag gaaacctgaa cgttggtgga tacgctcacg
      121 taaatgtctg ctatgagcga ggagcggacg ccctatttca caaaaattag tattgttcta
      181 caagtaactc tcacaatgag gttttatgaa aatcagaagg ttcagtaatg gggatgaaat
      241 atcgttattc agagtttttt tctcatctgt acatacgatc gcatcacact actacacacg
      301 tgaacaaatt gatgcttggg ccccagcaga tatcgacctg gagcgatggg ccaatcacat
      361 taaggaatta caaccttttg ttgtagagct ggatggtgaa atagctggat atgcagatgt
      421 tcaaccaaat ggatacattg atcatttctt tgtatcagga acctattcaa gacagggggt
      481 agggacacta ctgatgaatt gcattcatga ggaagccaga cagcgtggaa ttagtgaact
      541 tacttcaaat gtaagtaagg ctgcggaagt gttctttcta cgacacggct ttcatatagt
      601 ggagcgaggc tttcctattt gccgtggagt gacattacaa aatgctctga tgagaaaatg
      661 tttggcgaaa taatagtcag cctgcagaaa ggcagcattg ttcttttgcc ttgttgaact
      721 cagtaaaccg ctacaatgag caacgtccgc tgctggcgca aagcggacat cagtattcaa
      781 aaaatgaaaa acgacgactt gatgtatatc gtttgctata catggtggtt gtgctattct
      841 tgtaaagcaa atgctataca aggggtgtct catgaaatca gatgttcaac ttaaccttag
      901 agctaaggag tcgcagcggg cgctcattga tgcagctgcg gaaatccttc acaagtcacg
      961 tacagatttc attctggaaa cggcctgccg ggctgccgag aatgtgatcc ttgaccgccg
     1021 tgtatttaac tttaacgatg agcaatatga ggagttcatc aatctgcttg atgcaccggt
     1081 cgcagatgat cccgttatcg aaaaactgct ggcaaggaaa cctcagtggg acgtgtaaca
     1141 gcaccagaac ctttgtccgc ttttcatcag gtagctgagt tcgtcagcgg tgaagctgtg
     1201 ctcgatgact ggttgaagca aaagggcctc aaaaaccagg ctctcggagc ggccagaaca
     1261 tttgtggtgt gcaagaaaga cacgaagcaa gtagccggtt tttactctct ggccaccggt
     1321 agcgtcaacc atacagaagc gacaggcaac cttcggcgta acatgccaga tcccatccct
     1381 gtcattatac ttgcccgtct tgctgtcgat ctctcattcc atggaaaagg gcttggggct
     1441 gatttacttc atgatgcagt gcttcgttgc tatcgggttg ccgagaatat tggtgtacgt
     1501 gcaatcatgg ttcatgcact taccgaagac gccaaaaatt tctacattca ccatggtttc
     1561 aaatcatcac aaactcagca gcgaacattg ttccttaggc tccctcaata gaatgcaaag
     1621 actgttatgt tcaaatcgct ataagcgata atttgataga acgtctaagg ttaaattcag
     1681 gaagaatacg acgaacaaaa tattgatgag acaggaatcc gcgtgatgca agaaagcaac
     1741 ggaatggata atccgattgc ggacaatgtt atttagttat agccagaaac aaaaaagagc
     1801 ccatgtatta aatggactct ttcgctgatg cctcggttaa tctgtccagg ttttggggtc
     1861 agtacaaagt gagcccacct ctgccattct tgtggcgtta tgcattctca aggcactctg
     1921 ttaattttat cttgttggcg ttttataggc ccgataaccc attatgttat cgggcatttt
     1981 tttaacgtaa tggtaattcc gtcagacagg tctggctgtc atctctggtg gcaatggcat
     2041 gtgacgccgt tttaccgttg tagcttactt cgagcgtccc ttccatattg cgcggtagcc
     2101 aaacaccgat aaatccgttt cgatagcttt gcatctcttt ttgtacgatg acagcgcctt
     2161 tactgtctgt cacttttaca gtgaacggtt tattcggcat ttctccctga cagccggaaa
     2221 ggctgtggtt aaaacagggg tgtgtccgcc attcataggg cgcaaaagag agatagaatt
     2281 tgtcgcctaa cggtagcgta taaatctgct ctccgtcaga taatttgagc tcggtactgg
     2341 taatcgacgc ggagtaaggc aaaggacggc tctgcggcgt ctgatcaatc gtatccacga
     2401 tctgctcaac cgtttttccc gccagcccat gttgcgccag aaaagcggat tctgaggatg
     2461 ccgcaagcgc ggagccgctg gcgcataaac ccaaaagtaa taaccatgat gatttcgaca
     2521 taacttcaat tccttgtgaa caatctcctt gcctactata ggggttcccc taagggaaag
     2581 gtcaaaggga cgcagggtaa agtaatgcaa agttatgctg gggggggaga tggggaattg
     2641 gaataaaaaa aatccccgcc atcaggcagg gattcaaaat tctgagcttt ttaagcttac
     2701 aggctggtta cgttgccagc tgccgggcct ttagcgccgc tttcgatggt gaaggaaact
     2761 ttctgacctt cgtccagaga tttgtaacca tcgttctgaa tagcggagaa gtgtacgaac
     2821 acgtctttag aaccgtcatc aggagtaata aagccgaagc ctttatcagc gttgaaccat
     2881 tttacgatac cagtcatttt accggacata gtgtattacc ttttaaaaaa taagtgtgcc
     2941 tttcggcgtt atggcgtgct ttacagattt tttaagcgtt aaggaaatgc gcactacgag
     3001 gggtatctaa tggataactc ttgaagggac ttgccttact aaactgcttt aatggtctgt
     3061 acgtcaaacc gttgagcaca ttaactcatg taatgccggg cgatgcaact tttattttac
     3121 tttatttctc caggccagta atcgggcggg ggaaacggcc cttacgcagg accgttaaaa
     3181 cagaaagggg taaaaattgc tccatcaatt gcttacttaa gcgtgggttc gcctgtatca
     3241 ggcgcatcaa tttgagctct gctggcgtgg gtttttcgcg tttcgattcc cattcctgaa
     3301 ccatggcaac cgttacgccc agcgctctgg cgaattcatc tgtttttagt cccgttcctc
     3361 tccgtaactg ttcaaattcg gtaaaaggat tgggtttttg cgtcagggtg atctttcgtg
     3421 tttcatcttt aaaaacaatt tgttccaggc tgctcagcag ctcaaacatc ggatctttat
     3481 attccattga gaactcctgt aaatcacaca gcgggatcgt gaaatgcatc gaagcctctt
     3541 aagaatagtc gggaaacttg cgggtggggg gcgacgcgcc gccaggaagc gctatcgatt
     3601 cgtttcgatg ccttacgcta cgcga
//
LOCUS       DAJVSD010000323         3583 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.323, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000323 DAJVSD010000000
VERSION     DAJVSD010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3583
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.323"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(282..605)
                     /locus_tag="OQP62_004221"
     CDS             complement(282..605)
                     /locus_tag="OQP62_004221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001651551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system SymE family toxin"
                     /protein_id="HCS1723605.1"
                     /translation="MPDFTHCEFYSRVEGRSVRLCGEWMPQAGFINGVPVKIRVMKDC
                     IVITLQNTRELLGCIEGMGVTYINQRNVKAWLKDFPGALNDTGDIPVMSRDLQCITTN
                     CRFAH"
     gene            605..3109
                     /locus_tag="OQP62_004222"
                     /pseudo
     CDS             605..3109
                     /locus_tag="OQP62_004222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529574.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
     gene            3194..3514
                     /locus_tag="OQP62_004223"
     CDS             3194..3514
                     /locus_tag="OQP62_004223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723606.1"
                     /translation="MATSNYNINGQTGTADALSGMNTNNSPFLHTPADGSRKFTTFEV
                     GHDRAFDSEVKIFEHIANKFPTTAKGRIDLYSELKVCPSCSEVITQFKAMYPNIEVNV
                     TWGG"
BASE COUNT          897 a          838 c         1177 g          671 t
ORIGIN      
        1 tattttttga tacaaaaaaa agaagcgaat ttaatttaaa atcatacgac gcatttataa
       61 atacagattt ttctgttaaa cccagaaaaa tatatccaga tgtattttac gatgttgata
      121 ctatcggttt tcaggggaaa gggctatttt tttctgacag actgatcgat gcaatacagg
      181 acgccgggat tgtcgggctg catgttgatg acactgaaat ggaaatgaat ccatagactg
      241 acacgggata tttgatgacc gcgatgttgt tttttctgtt gttagtgagc aaaccggcaa
      301 ttggtagtaa tacactgaag atcccgactc atcaccggaa tatccccggt gtcattcagc
      361 gcaccgggaa aatctttcag ccatgcttta acgtttcgct ggttgatata ggtcacgccc
      421 atcccttcaa tacagcccaa cagttcacgg gtattttgca gcgtgatcac gatgcagtct
      481 ttcatcaccc gaattttaac gggcactccg ttaataaacc cggcctgcgg catccattca
      541 ccgcataaac gaactgaacg tccctcaacc cgtgaataga actcacagtg ggtaaaatcc
      601 ggcacagtat cagcgcgagt ttgcgtacga cgacaacgac tgcatgacga tgcaccggga
      661 gccgggcggc gaacggtatt actacacctg ggcgtggttt gaaggcccgg acgatgcggc
      721 gtggcgggtg acgggccatc atacggacag cggcgagcag taccgtctgg actggaatct
      781 ggcagaacgt tcgctgtgcg tgacggatag catggggcgt acgcgctgcc actggtggga
      841 tgcgcagggc ctggtgacgg cgtaccggga cgaggccggg cagatgacca ctttccgctg
      901 gagcgatgaa gagcggttac tgctggggat gacggacgcg cagggtggca aatggcgtta
      961 tgtctatgac cgtctcggcc acctgacgga gacgcatgac ccgctgggcc gggttgagca
     1021 gacgcagtgg cacccggtgt ggcaccagcc ggaaacggag gtggatgccg cgggggtggc
     1081 gtggcgttat gagtatgatg agcggggcaa cctgcaggcg gtcagcgacc cgctgcacca
     1141 gcgcacggta tacgggtatg accggcacgg ccaggtggtg cggataaccg acgcgcgggg
     1201 cggagataaa tacctgcagt ggaacgaaga cggacagctt atgcgccaca cggactgttc
     1261 tggctcgcag acggcatggt tttatgatga acgcacgcgg ctggaaaggg tgacggacgc
     1321 ggagagtaac agtacgcgtt acagctatga cggcaacgga catctgacgg aggtcatgtt
     1381 cgcggacggg cgtacggagc gttaccagcc ggatgcggcg ggacggctgg tgaaatatac
     1441 gagcccggcg gggcaaataa cacgctggca gcgggacggc caggggcggg tgcgcaggca
     1501 gacggatgcg acgggtcgca ggacggcgta tgagtacgac gcttacgggc ggctgaccac
     1561 gctcacgaac gagaacgggg aaagctaccg gttccggtac gatgttctgg accgggtgac
     1621 ggaacagacg gaccccggcg gcagccgccg ggcatacggg tataacgcgc tgaatgcggt
     1681 gacggcagtg atatacggcg gggagcgcgg gggagaaatc cgccacggtc tggagcgtga
     1741 tgcggcgggg aggctgacgg cgaaaatcac gccggagacg cgcacggaat accggtacga
     1801 cgcggcggac cgtctgctgg aaatccgccg caggcggcat gatgcggcgg aaggcggaga
     1861 gccggaagtt atccggttca gctacgacag tgcgggtaac ctgctgagcg aggagacggc
     1921 gcagggcgtg ctgcagcacc ggtacgatgt tcagggcaac cgcacagaaa cgcagatgcc
     1981 ggacgggcgg acgctgcggt acctgtacta cgggagcgga catctccagc aaatcaacct
     2041 ggggcgtgat gtcatcagcg agttcacgcg cgaccacctg caccgtgagg tgcagcggag
     2101 ccaggggcgg ctggacatgc ggcggatgta cgaccggacg ggccggttaa cgcggaaact
     2161 gacctgtaaa ggaatgcgcg gtgtggtgcc ggagacgttt attgaccggg aatatgcgta
     2221 cagcggccag gatgagctgc tgaaaaagcg gcacagccgg cagggggtga cggattattt
     2281 ttacgacacg acggggcgca tcacggcgtg ccggaatgag gcatacctgg acagctggca
     2341 gtacgacgcg gcggcgaacc tgctggacag gcggcaggga gagaccgcgc aggcgggtgc
     2401 aggcagcgtg gtgccgttca accggataac gtcatatcgc gggctgcatt accgttacga
     2461 tgaatatggc cgggtggtgg aaaagcgggg ccgcaacggc acgcagcact accgctggga
     2521 cgcggagcac cggctgacgg aagtggcggt cacccggggg ggcaccgtac ggcgttacgg
     2581 gtacgtgtac gacgcgccgg gcaggcgggt ggagaagcac gagctggacg cggaaggaaa
     2641 gccgtataac cggacgacgt ttttatggga cggaatgcgg ctggcacagg agtgcaggct
     2701 gggaagaagc agcagcctgt atatctacag cgaccggggg agccacgagc cgctggcgcg
     2761 ggtggacagg gcggcgccgg gcgaagcgga tgaggtgctg tattaccata cggacgtaaa
     2821 cggcgcgccg gaggagatga cggacggcgg gggcaatatt gtctgggaag cgggctatca
     2881 ggtatggggg aacctgacgc atgaaaaaga aacccggccc gtacagcaga acctgcgttt
     2941 ccaggggcaa tatctggaca gggaaacggg gctgcattac aatttgtaca gattttatga
     3001 tccggatatc gggaagttta tatcgggcga tccgataggg ttagcgggtg gaataaacct
     3061 ctaccaatat gcgcctaatc cgctaagtta tatagatccg ctaggtttat gtaaaaaatt
     3121 tgctggtaaa ggttctccgg cagaaagggc caggaattat agaagcactg gctaggtagg
     3181 tggaaaacga aatattgcaa catccaatta taatattaat ggtcaaacag gaacggctga
     3241 tgcacttagt ggcatgaata cgaataattc accattttta catactccag cagacggaag
     3301 tcgaaagttc actaccttcg aagtggggca tgacagggct ttcgattctg aagttaaaat
     3361 atttgaacat atagccaata aatttccaac aacggcaaaa ggtcgtattg atctatactc
     3421 ggaattaaaa gtatgcccct catgttcaga ggttataact caattcaaag caatgtatcc
     3481 taatattgaa gttaatgtga catggggagg gtaatatgga acagcgagct tttttgattg
     3541 aaattaagaa gttaattgca tcgataacgt caaaaaacat gac
//
LOCUS       DAJVSD010000324         3581 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.324, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000324 DAJVSD010000000
VERSION     DAJVSD010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3581
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.324"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(351..959)
                     /locus_tag="OQP62_004224"
     CDS             complement(351..959)
                     /locus_tag="OQP62_004224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1062 domain-containing protein"
                     /protein_id="HCS1723607.1"
                     /translation="MKVIWTVTPVGYQRIAKRCPSCSVKRDFTPSGAFRVNSQKKVLD
                     VWSIYKCTHCDYTWNISLFSRLPVSKINRNLYCRLMANDAATVQYFAYDNAILKRNNA
                     ELSGQPDFHIQERWLVSIASHKQVSVSVRISRSFQVSLLSILKKQLLLSAAEIKRRIE
                     TGQISGVTMKMLKSRKLKNAKYDLQLSVETLYDRRRIVLTRR"
     gene            1447..1704
                     /locus_tag="OQP62_004225"
     CDS             1447..1704
                     /locus_tag="OQP62_004225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjhX family toxin"
                     /protein_id="HCS1723608.1"
                     /translation="MNLSRQEQRTLHVLAKGGRITHIRDASGRVTAVECYSREGLLLA
                     DCTLAVFKKLKTKKLIKSVNGQPYRINTTGLNNVRAQPDNR"
     gene            1709..3340
                     /locus_tag="OQP62_004226"
     CDS             1709..3340
                     /locus_tag="OQP62_004226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HCS1723609.1"
                     /translation="MMMDISAVIFATHRIRLLPDEGKIPWDEPAFSQRMLENHLSQDH
                     DWASRRLTVIEQQVTWITRQLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASI
                     TWARQQAQAANLNIDYIQQDIRTYHPTEPFDFIMMTFGELNVFSAADAQSLISHCAQW
                     LKPDGKLLVEVHTFDEVKRQGMAQPGWQRCPHGLFLAVPHLLLTENAWDEEAQTSSTQ
                     FWAIAENGCTTRFGSQMKAWRDDEYISLLGDAGFTVLQRPDSHTWPVGETFAGKLFAL
                     LAEKASTSEGIALSKRNNPMDIPRIFTISESEHRIHNPFTAEKYATLGHALRMKPGMR
                     ILDLGSGSGEMLCTWARDYGVTGTGIDISPLFTTQAKQRAEELGVSEYVHFIHNDAAG
                     YIDEEKYDVAACVGATWIAGGVAGTIDLLAKSLKPGGIILIGKPYWRQIPATEEIAHA
                     CGVSSVADFRPLPELVAFFDQLGYDVVEMVLADPQGWDRYEAAKWMTMRRWLEENPDD
                     EFAQEVRTELTAAPKRHVTWTREYFGWGVFALIAR"
BASE COUNT          934 a          911 c          846 g          890 t
ORIGIN      
        1 gtaaccgcaa cagaaaaaat tacgctatga atagcgccac attactctaa ttcagtggtt
       61 caggtattaa tatcagctca acagtgagcc atttcttctt attttttaat ggtgttgcgt
      121 gaatatttat ttactctaca gataaagata attgtaaccc atcgcccttt gtcattctgc
      181 tgatcatcac tggtgcgaaa acgtctggat tatccgtggc gattcagtct tcactgaatg
      241 ccacagacaa gcgttattca actaaagctc acctgtccct tagtccttct ttcattccgt
      301 tgcgtcgttg ccataccagc acacttaaac gtaaggtgag cttattgttt ttatcgacgg
      361 gtcagaacaa tccttcgccg gtcatacagt gtttcaacag agagctgcaa atcatatttc
      421 gcattcttca gttttcgcga tttaagcatt ttcatcgtga cgccacttat ttgccctgtt
      481 tcaatccgtc tcttgatttc ggctgcgctt agcaggagtt gcttcttcaa aatcgacagc
      541 aggctgacct gaaaagaacg ggaaatcctg acgctaacac tgacctgctt gtgggaggcg
      601 atactgacca gccaccgttc ctgaatgtga aaatcaggct gccccgataa ttcagcattg
      661 tttcgcttca ggatcgcgtt gtcataagca aaatattgca ccgtggcagc atcattcgcc
      721 atcagccggc aataaagatt gcggttaatt ttgctgactg gcaggcgcga gaacagggag
      781 atattccagg tgtaatcgca gtgtgtgcat ttatagatac tccagacatc gagtaccttc
      841 ttttgcgaat taacccgaaa tgccccagaa ggcgtgaagt cccgttttac gctgcatgaa
      901 gggcaacgtt tcgctatgcg ctgatacccc acaggagtga cagtccatat gactttcata
      961 acgtaccttt tttaacccat acaaaaccgg atccgaactc agcggaccat aaatgtttgt
     1021 gtatgaaaaa tatttaagtg atatttttca gcgggttaaa aaaagatttc caacgctaca
     1081 accctgtcaa cggccaaaag atacgtcgag actatcaaag cggccattat cgggtatatg
     1141 agtttaatca atattcatta tggtaattgc gggagctatt catctgatac gctaaacgtc
     1201 atgagcctcc ctttgagatc acacttttca ctcccggtta ttcacttaca gaaatcaggt
     1261 gttatcattc actacgtaaa tacctttcaa ctcaacccga ggctttgatg ctggagaatg
     1321 tcatcatctg ataatcagtt acccgacctt ttcaggccgg actgattatc aatgcgccga
     1381 aatcgaatgc ggacaccgca gtgtgtttgc acgttttgcc tatgatgatt aaacaggttc
     1441 ttcagtatga atttatcccg tcaggaacaa cgtaccttac acgttctcgc caaaggcgga
     1501 cgcattacgc acatccgcga tgcgtcaggc cgcgtcaccg ccgttgagtg ctatagccgc
     1561 gaagggttgt tgctcgccga ttgcacgctc gctgtattca aaaaactcaa aaccaaaaag
     1621 ctgatcaaat ccgttaacgg tcagccctac cgcattaata caaccgggct gaacaacgtt
     1681 cgcgcccagc ctgacaatcg ctaaggagat gatgatggat atcagcgccg ttatttttgc
     1741 aacgcatcgc attcggctat tacccgatga aggcaaaatc ccctgggacg agccagcctt
     1801 cagccaacgc atgctggaaa atcatctgtc acaggatcac gactgggcca gccgccggct
     1861 aaccgtgatt gagcaacagg taacatggat tacccgtcag ttacccgcag gcgcccgcat
     1921 tctggatctc ggctgtggcc ccggttttta tacccgcctg ttagcagagc gtgggtttca
     1981 ctgcacaggc gtagatttct ctccggcatc catcacatgg gctcgccagc aggcgcaagc
     2041 cgcaaacctg aatattgact acattcagca ggatattcgt acataccacc ccacggaacc
     2101 ctttgatttc attatgatga cgtttgggga actgaatgtc tttagcgctg ctgatgcgca
     2161 aagcctcatc agtcattgcg cgcagtggtt gaaaccggac ggcaaactgc ttgttgaagt
     2221 gcataccttc gatgaagtta aacgccaggg catggcgcag ccaggctggc agcgttgtcc
     2281 gcacggcctg tttcttgccg tgcctcatct gctgttaacg gaaaatgcct gggatgaaga
     2341 ggcccaaacc agctcaacgc agttctgggc gatagcggaa aacggctgta ccacccgttt
     2401 cggcagtcaa atgaaggcct ggcgcgatga tgaatatatc agcctgcttg gtgatgctgg
     2461 cttcactgtg ttgcagcgcc cggacagtca cacctggccg gtcggcgaga cttttgcagg
     2521 caagctgttt gcgctgctgg ctgaaaaagc atccacttct gagggtattg ccctcagtaa
     2581 aaggaataac ccaatggata tcccacgtat ttttaccatt agcgaaagcg aacaccgtat
     2641 ccataatccg tttacagcgg aaaagtacgc cacgctgggc catgcgttac gcatgaaacc
     2701 aggcatgcgg attctcgatc tcggtagcgg ttcgggtgag atgctctgca cctgggctcg
     2761 cgattacggt gttacaggta ctggcattga cataagcccg ctcttcacca cacaggcaaa
     2821 acaacgtgca gaagagctcg gcgtcagtga atacgtacat tttattcata acgacgcggc
     2881 cggttatatc gacgaggaaa aatatgacgt ggcggcctgc gtaggcgcta cctggattgc
     2941 gggcggtgtc gcggggacaa tagatctgct ggccaaaagc ctcaaacctg gcgggatcat
     3001 tctcatcggt aaaccgtact ggcgtcagat ccccgcaacg gaagagatcg cccacgcctg
     3061 tggcgtctca tccgtcgccg attttcgccc cctgcccgag ctggtcgcct ttttcgacca
     3121 actcggctat gacgtagtgg aaatggtgct ggcggacccg caaggctggg acagatatga
     3181 agccgctaag tggatgacca tgcgccgctg gctggaggaa aaccctgacg atgagtttgc
     3241 gcaagaggtt cgaacagaac tgacggcagc ccccaaacgt cacgtcacct ggacgcgaga
     3301 atactttggc tggggcgtat ttgcgttaat cgcgcgataa cgtgaagcag gaggtatacc
     3361 ctacaagagg tatacctcca tttaaaagta ttcaacaaat taacacggct caaggcggga
     3421 atatatcgtc ttaatttcgc cattaagttt ctgccacaat atgtcgcaag acgtgcaagc
     3481 gttccacctc acctgatgag cgaaaccacc atcaataaga cgttattgct gcgattcaat
     3541 tattaagaat aaaaaaagaa ccagaagaaa attaaaaaat g
//
LOCUS       DAJVSD010000325         3572 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.325, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000325 DAJVSD010000000
VERSION     DAJVSD010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3572)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3572)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3572
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.325"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            51..623
                     /locus_tag="OQP62_004227"
     CDS             51..623
                     /locus_tag="OQP62_004227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016234457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS1723610.1"
                     /translation="MQIGYIRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSARPG
                     LKKLLRTLSEGDTLVVWKLDRLGRSMKHLITLIEELREKGVNFRSLTDSIDTSTPMGR
                     FFFHVMGALAEMERELIVERTLAGLEAARAQGRIGGRRPKLTKEQHEQIARLIKNGYS
                     RKQLAIIYDIGISTIYRYHPVEELQTQAEL"
     gene            904..2286
                     /locus_tag="OQP62_004228"
     CDS             904..2286
                     /locus_tag="OQP62_004228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1723611.1"
                     /translation="MEKKLGLSALTALVLSSMLGAGVFSLPQNMAAVASPAALLIGWA
                     ITGVGILLLAFAMLILTRIRSELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSY
                     LVIVFSALSFFTDTPALRLFGDGNTWQAIVGASVLLWIVHFLILRGVQTAASINLVAT
                     LAKLLPLGAFIVLAIMMFKLDTFTLDFTGVELGIPVWEQVKNTMLITLWVFIGVEGAV
                     VVSARAKNKRDVGRATLLAVLAALGIYLLVTLLSLGVLARPELAEMRNPSMAGLMVKM
                     MGPWGEIIIAAGLIVSVCGAYLSWTIMAAEVPFLAAAYKSFPGIFARQNAQGAPSASL
                     WLTNICVQICLVLIWLTGSDYNTLLTIASEMILVPYFLVGAFLLKIATRPLHRAVGIG
                     ACIYGLWLLYASGPMHLLLSVVLYAPGLLVFLYARRTHKHDNVLNRQEVVLIGLLLVA
                     AVPATWMLVG"
     gene            complement(2348..2683)
                     /locus_tag="OQP62_004229"
     CDS             complement(2348..2683)
                     /locus_tag="OQP62_004229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlpM family protein"
                     /protein_id="HCS1723612.1"
                     /translation="MGLVIKAALGALVVVLIGLLSKTKNYYIAGLIPLFPTFALIAHY
                     IVASERGIDAMRTTIVFSMWSIIPYFIYLATLWYFSGVMRLPVALGGAVVCWGLSAWL
                     LIFCWIKWH"
     gene            2810..3541
                     /gene="rstA"
                     /locus_tag="OQP62_004230"
     CDS             2810..3541
                     /gene="rstA"
                     /locus_tag="OQP62_004230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator RstA"
                     /protein_id="HCS1723613.1"
                     /translation="MNRIVFVEDDAEVGSLIAAYLAKHDIDVIVEPRGDRAEDLILIT
                     QPDLVLLDIMLPGKDGMTICRDLRHRWQGPIVLLTSLDSDMNHILALEMGACDYILKT
                     TPPAVLLARLRLHLRQSEQTQQAKSLQESALTPHKALRFGALTIDPLNRAVQLNGDFI
                     SLSTADFELLWELATHAGQIMDRDALLKTLRGVNYDGLDRSVDVAISRLRKKLLDSAA
                     EPYRIKTIRNKGYLFAPHAWDETTG"
BASE COUNT          835 a          884 c          916 g          937 t
ORIGIN      
        1 cccacctata ccagctatgt atttttaaca aaacaaagag gatatttttc atgcaaattg
       61 gctacattcg tgtgtcaaca aatgaccaga atacagattt acaacgaaac gcactgaact
      121 gcgcaggatg tgaactgatt tttgaggata aaatcagcgg aacaaagtca gcccgaccgg
      181 gattgaaaaa gctgctcaga acgttatcag aaggagatac gctcgttgtc tggaagctgg
      241 acaggctggg cagaagcatg aaacacctca tcactcttat tgaggaactg cgggaaaaag
      301 gggttaactt ccgtagtctt acagacagca ttgatacgtc aacacccatg ggacgtttct
      361 tttttcacgt catgggggct ttagcggaaa tggagcgtga attaatagtt gaacgaacac
      421 tggccggact tgaagcagca cgtgcacagg ggcgtattgg tggacgtcgt ccgaaactga
      481 caaaagagca acatgaacaa atagcaaggc tgatcaaaaa tggctatagc aggaaacagt
      541 tggcaattat ttacgatatc ggtatatcga cgatttatcg ttatcaccct gtagaggaac
      601 ttcaaactca agctgagttg taattctttt tctgatattg aaatgccgcg gcgatgtaat
      661 ttatctcacg gaaataggta cgtttatcgc gcggcgcatc aatcaggctt tctcgcggga
      721 tgccagttcc gtcaaatatc gcgatgaatc tcacttttcg cttttttggc gataaatctt
      781 atccaggccg ttgcatgcgg tcccttctct ccgtaaaatc ccgcgcctta gtggctttca
      841 ccatttttat gcgttttgcc ataataatta ttcttccaat ttcattttta tagctggata
      901 ccaatggaaa aaaaactggg actgagcgcg ctgaccgcgc tggttttaag ctcaatgctt
      961 ggcgcaggtg ttttcagtct gccccagaat atggccgccg ttgccagtcc ggctgcgttg
     1021 ttaattggct gggccattac cggcgtgggg atactcctac tggcattcgc catgttaatc
     1081 cttacgcgca ttcgctccga gcttgacggc ggcatcttta cttacgcccg cgaaggcttc
     1141 ggcgaactga ttggcttttg ttctgcctgg ggctattggc tgtgcgcggt catcgccaac
     1201 gtatcctatt tggttatcgt cttttcagcg ctgagtttct ttaccgatac gcctgccctg
     1261 cgtctgtttg gcgacggtaa tacctggcag gctattgtcg gcgcttcagt cctgctctgg
     1321 attgtccatt tcctcatcct gcgcggcgta caaacggcag ccagcatcaa tctggtcgcg
     1381 actctggcga aactgttacc gctcggcgcg tttattgtgc tggctatcat gatgttcaaa
     1441 ctggatacct tcacactgga cttcaccggt gttgagctcg gtattcccgt atgggaacag
     1501 gtcaagaaca ccatgcttat tacgctgtgg gtgtttattg gcgttgaagg cgccgtcgtc
     1561 gtctcggccc gagcgaaaaa taaacgcgat gtaggccgcg ccacgctact ggcggtactc
     1621 gcagcgctgg gaatatatct cctggtcacg ctgctttctc ttggcgttct tgcgcgtccg
     1681 gaactggcgg agatgcgcaa cccgtcgatg gccggtctga tggtgaaaat gatggggccg
     1741 tggggagaaa ttattattgc agcgggactg attgtgtctg tctgcggggc ttatctaagc
     1801 tggactatca tggcggcaga ggtgccgttt ctggcggcag cctataaatc cttcccgggc
     1861 atcttcgcgc gacaaaatgc gcaaggcgcg ccttctgcgt cgttatggct caccaacatc
     1921 tgtgtgcaaa tctgtctggt gctgatctgg ctgaccggtt cggactacaa cacactattg
     1981 acgattgcgt cagaaatgat tctggtgccc tactttctgg tcggcgcatt tctgctgaag
     2041 attgcaacgc gtcccctcca tcgggcggtc ggtatcggag cctgtattta tggcttatgg
     2101 ttattatatg cgtcgggccc tatgcacctg ctgctgtccg tcgtactgta cgcgcctgga
     2161 ttactggttt tcctgtatgc gcgtcggacg cacaagcatg acaatgtatt aaatcgtcag
     2221 gaagtcgtgc tgattggttt attgctggtc gcggcggttc cggctacgtg gatgctggtg
     2281 ggttaacaac ctccctatcg taatatccgt ctgtattacg atggggaaac cacggtcttt
     2341 gccaatatta atgccattta atccagcaaa aaatcagcag ccacgcgctt agcccccagc
     2401 agaccaccgc accgccaagc gcgacgggca ggcgcatcac gccgctgaaa taccatagcg
     2461 ttgcaagata aatgaaataa ggaatgatcg accacatgct aaagacgatg gtggtacgca
     2521 tcgcgtcgat gccccgctcg ctagccacga tatagtgcgc gataagcgca aacgttggaa
     2581 acagaggaat taatccggcg atataataat tttttgtttt tgacagcaga ccaatcaata
     2641 cgacgaccag cgcccccagg gcagctttaa tcacgagtcc cattaccttg ccttaacatg
     2701 ctaataacaa cagcatgtag cataacggaa ccgctctcgt ttagaaaaga tttatggaag
     2761 ggaaaacaga ggaggtgtat gttggcgttt tctattctcc atttataata tgaaccgcat
     2821 tgtatttgtt gaagacgacg ctgaagtggg ttctctcatt gccgcttatc tggcgaaaca
     2881 tgatattgat gtcattgttg agccgcgtgg tgaccgggcg gaggatctta tcctcatcac
     2941 tcagcccgat ctggttttac tggatattat gcttccaggt aaagatggca tgacgatatg
     3001 ccgcgattta cgccaccgct ggcaaggtcc gattgtcctg ctcacctcgc tggacagtga
     3061 tatgaatcat attctggcgc tggagatggg cgcctgcgac tacatcctca aaaccacgcc
     3121 tccggccgtt ttgctggcgc gtctgcgctt acacctgcgg caaagcgaac aaacgcaaca
     3181 ggcaaaaagt cttcaggaga gcgcgcttac gccgcataaa gcgctgcgtt ttggcgcgtt
     3241 aaccatcgat ccccttaacc gggcggtcca gctcaatggc gatttcatat cgctctccac
     3301 cgccgatttt gaattgctct gggaactggc gacacacgcc ggacaaatta tggatcgcga
     3361 cgcgttgcta aaaacgctgc gcggcgttaa ttatgatggt ctggatcgca gcgtggatgt
     3421 ggcgatttcc cgcctgcgta agaaactgct ggatagcgct gctgagccct atcgtataaa
     3481 gaccattcgc aataaaggct atctttttgc ccctcatgcc tgggacgaaa cgacgggata
     3541 agtgagtcga cagattttac ctgcctttat ca
//
LOCUS       DAJVSD010000326         3570 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.326, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000326 DAJVSD010000000
VERSION     DAJVSD010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3570
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.326"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            81..2570
                     /locus_tag="OQP62_004231"
     CDS             81..2570
                     /locus_tag="OQP62_004231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
                     /protein_id="HCS1723614.1"
                     /translation="MLRMTPIASLVLLTLFTWQTQAIATETFDTHFMVGGMRDQKITN
                     FHLDENKPIPGQYELDIYVNNQWRGKYDIIVADDPGSTCISTELLKNIGVISDGLQPQ
                     GATDCIALKDVVRSGGYTFNIGVFRLDLSVPQAYVNEVEAGYVLPENWDRGINAFYTS
                     YYASQYYSDYKNSGSSESTYVRFNSGFNLLGWQAHADTTFNKTDGSSGEWKSNTLYLE
                     RGIAELLGTLRAGDQYTSSEIFDSVRFTGVRLFRDMQMLPNSKQNFTPLVQGIAQTNA
                     LVTIEQNGFVVYQKEVPPGPFSIADLQLAGGGADLDVTVREADGSINTWLVPYASVPN
                     MLQPGVSKYDFSAGRSHIEGADNQADFTQISYQYGLNNLLTLYGGTMLSNHYNAFTLG
                     TGWNTRIGAISLDATRAHSKQDNGDVFDGQSYQIAYNKYLTQTLTRFGLAAYRYSSQD
                     YRTFNDHVWANNKNNYRRDKNDVYDIADYYQNDFGRKNTFSANVSQSLPEGWGAVSLS
                     ALWRDYWGRSGTSKDYQISYSNTFQKINYTLSASQTYDEDHNEDKRFNLFISIPFDWG
                     DGITTPRRHLNVSNSTTFDDDGFTSNNIGLTGTAGSRDQFNYGVNVSHQRHDSETTAG
                     TNLTWNTPVATLNGSYSQSSNYTQTGGSISGGVVAWSGGLNLSSRLSDTFAIMQAPGL
                     EGAYVNGQKYRTTNKKGTVVYDNLTPYRENHLMLDVSQSSSETELRGNRKVAAPYRGA
                     VVLVNFDTDQRKPWFIKAQRPDGSPLIFGYDVVDHHGHNVGIVGQGSQLFIRTNDIPP
                     EVSVPVDKEQGLSCSITFGKTVDESKVYICR"
     gene            2586..>3570
                     /locus_tag="OQP62_004232"
     CDS             2586..>3570
                     /locus_tag="OQP62_004232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative fimbrial-like adhesin protein"
                     /protein_id="HCS1723615.1"
                     /translation="MKLFLFIVMLLILPETYAACTGEITYQDNLIIREDFTINPNQSA
                     TYSHNFNDTTCSGTYKITRMDPSDIIVGLYNDTVKLKLKIAWADNNTLTMPFTTGYTV
                     TVEPASSGANVNISAGSGNSVLINGVVSITSASSATQFTASLRFLGCLLAGRGWNACA
                     ADYNSYLRGAGLYSFDLFVSYDRKQTTCKPEDLTITLPNIALSELYNTGKVSNKNAAD
                     NIRLQCDNLFGNAKQTSRKMTVYLSSSDLIPDSYSVLRGAVNNGVGFILESGGKTVNI
                     SNAAEQGNASTLWKVDQVGTPLNSDMITIPIIASYYVYDRDNIKPGDLKATA"
BASE COUNT          993 a          712 c          869 g          996 t
ORIGIN      
        1 ccagtatgaa gtaacgatta ttgatgataa tggtaactat attagtagca aaattaatgt
       61 aaaataaaca ggagttcatc atgctaagga tgacgcccat cgcttcgctt gttttattga
      121 ctctgtttac ctggcaaacg caggctatcg cgacggaaac gtttgatact cattttatgg
      181 tggggggaat gagagatcaa aaaataacaa atttccatct ggatgagaat aagccaattc
      241 cgggacagta cgaattggat atttatgtca acaatcaatg gcgaggtaaa tacgatatca
      301 ttgttgccga tgatcccggt agcacgtgta tttcaactga gttgttgaaa aatattggtg
      361 tgataagcga tggtctgcaa ccgcagggag caacggattg tattgcgtta aaagatgtcg
      421 tgagaagcgg tggctatact tttaatattg gcgtttttcg gctggatttg agcgttcccc
      481 aggcctatgt aaatgaggtc gaggcgggtt atgtattgcc tgaaaactgg gatcgcggca
      541 tcaatgcatt ttatacttct tactatgcca gccagtatta cagtgactat aagaattctg
      601 gcagtagtga aagtacttac gttcggttca atagcggttt caatctgttg ggctggcaag
      661 cgcatgcgga taccacattt aataaaaccg atggcagcag cggtgagtgg aaaagcaaca
      721 cattgtatct ggagcgcggt atcgctgagc tcctcggcac attacgcgcc ggggatcagt
      781 atacctcgtc agagattttt gattctgtga gatttaccgg cgttcgcctg ttccgcgata
      841 tgcaaatgtt gccaaactcg aaacagaatt ttacgccgtt ggtgcagggg attgcacaga
      901 ctaacgcttt ggtaaccatc gaacagaacg gattcgttgt ttatcagaaa gaggttcctc
      961 ctggcccctt ttccattgcg gatctgcaac tcgcgggcgg tggcgcggat cttgatgtca
     1021 ccgtgcgtga ggcggatggt tcgataaata cctggctggt gccttacgct tccgtaccga
     1081 acatgttgca gcctggcgtc tctaagtatg atttttccgc cggccgtagt catattgaag
     1141 gcgccgataa tcaggccgat tttacacaaa tcagttatca gtatggcctt aataacctgt
     1201 tgacgcttta tggcggtacg atgctatcga accattataa tgcgtttacc ctcggcacgg
     1261 ggtggaatac ccggattggc gccatttcgc ttgacgctac gcgagcgcac agtaaacagg
     1321 ataatggcga tgtatttgat ggtcagagtt atcagattgc ttataataaa tacctgaccc
     1381 aaacattaac tcggtttggt ctggctgcgt atcggtattc atcacaggat taccgcacat
     1441 ttaacgatca tgtctgggcc aataataaaa ataactatcg tcgcgataag aatgatgtat
     1501 acgatattgc tgattattat caaaacgatt ttgggcgtaa aaatacgttt tcagctaatg
     1561 tgagccaatc cttgccagaa ggatggggcg cagtatcact gagtgcatta tggcgtgatt
     1621 actggggacg tagcggcacc agtaaagatt atcaaataag ctattccaat acgttccaga
     1681 aaattaatta tacgttatcc gccagtcaga cttacgacga ggatcataat gaagataaac
     1741 gttttaacct gtttatttca attccctttg actgggggga cggtattact accccgcggc
     1801 gtcatctgaa tgtgtcgaac tcgacgacct ttgatgatga tggatttacc tcaaacaata
     1861 ttggtttaac cggtacggca ggcagtcgcg atcaatttaa ttacggcgtg aatgttagtc
     1921 atcagcgaca cgatagtgag accacagcgg ggacgaattt aacctggaat acgcccgttg
     1981 caacgcttaa tggtagttac agccagtcgt ccaattatac tcagaccggc ggaagtattt
     2041 ccggtggggt tgtagcctgg agtggcgggt tgaatttatc cagccggctt tcagatacct
     2101 ttgcgattat gcaggctccg ggacttgaag gagcctacgt taacggccaa aaatatcgga
     2161 ccaccaataa aaaaggaacg gtggtttatg acaaccttac gccatatcgc gaaaaccatc
     2221 ttatgcttga tgtgtcgcaa agtagcagtg aaacggaatt acgcggtaac cgtaaagttg
     2281 ccgccccgta ccgaggggcc gtcgtgctag tgaattttga taccgaccag cgtaaaccat
     2341 ggtttattaa agcgcagcgt cctgatggct cgcctcttat ttttggttat gatgtagtag
     2401 atcatcatgg tcataatgtg ggcattgttg gacaaggtag tcagctattt attcgaacga
     2461 atgatattcc gcccgaagtc agtgtaccag tagataaaga gcaggggctt tcatgttcaa
     2521 tcacctttgg aaaaacggtt gatgaaagta aagtttatat ttgtcggtag tggtgaggtg
     2581 gtgaaatgaa actctttctt tttatcgtga tgttattgat tttacctgaa acatacgcag
     2641 cctgtacggg agaaattact tatcaggata atttaattat tcgtgaggat tttacgatta
     2701 accctaatca gtccgcaact tatagccata attttaacga tacaacttgt tcagggactt
     2761 ataagataac gcgtatggat ccttccgata tcatcgtggg attatacaat gatacagtaa
     2821 aactgaagtt aaaaatcgcc tgggcagata ataatactct cacaatgccg tttacaacgg
     2881 gctatacggt aacggttgaa cccgcttcct ctggggcgaa tgtaaatatt tctgccggta
     2941 gtgggaacag tgtcctaatc aacggggtgg tatcaataac aagcgcttct tctgcaactc
     3001 agtttacggc cagtttgcgg tttttagggt gcctgctagc aggaagaggc tggaatgcct
     3061 gtgccgcaga ttataatagt tatcttagag gtgcagggtt atattcattt gatctgtttg
     3121 tgtcctacga tcgcaagcag acaacctgca aacctgaaga tctgacgatc acgctaccga
     3181 atattgcgct ttctgaatta tataacacag gcaaggtcag caacaaaaat gccgcggata
     3241 atattcgact ccagtgtgat aatctttttg gtaatgctaa acaaacatcg cgtaaaatga
     3301 cggtttatct ctccagcagt gatttaatac cagatagcta ttctgtgttg cgtggtgctg
     3361 tgaataatgg cgtcggattt atactggaga gcggtggaaa aacggtgaat atttcaaatg
     3421 cagcagagca gggtaatgct tcaacgttat ggaaagtgga tcaagtaggc acgccgctca
     3481 acagtgatat gataacaatc cctattatcg ccagttatta tgtttatgac cgagacaata
     3541 taaagccagg cgatctaaaa gcgactgcgc
//
LOCUS       DAJVSD010000327         3552 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.327, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000327 DAJVSD010000000
VERSION     DAJVSD010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3552)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3552)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3552
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.327"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            332..1189
                     /gene="focA"
                     /locus_tag="OQP62_004233"
     CDS             332..1189
                     /gene="focA"
                     /locus_tag="OQP62_004233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter FocA"
                     /protein_id="HCS1723616.1"
                     /translation="MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVF
                     ISIAFVFYITATTGTGAMPYGMAKLIGGICFSLGLILCVICGADLFTSTVLIVVAKAS
                     GRITWGQLAKNWLNVYFGNLIGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKMHHT
                     FIEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIP
                     MGIVIRDFATPEFWTAVGSSPESFSHLTVMSFITDNLIPVTIGNIIGGGLLVGLTYWV
                     IYLRGNEHH"
     gene            1249..3531
                     /gene="pflB"
                     /locus_tag="OQP62_004234"
     CDS             1249..3531
                     /gene="pflB"
                     /locus_tag="OQP62_004234"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HCS1723617.1"
                     /translation="MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFL
                     AGATDATTKLWDSVMEGVKQENRTHAPVDFDTSVASTITSHDAGYINKALEKIVGLQT
                     EAPLKRAIIPFGGIKMVEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRC
                     RKSGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKFAQFTSLQSDLENGVNLEATI
                     RLREEIAEQHRALGQIKEMAAKYGCDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMS
                     FGRVSTFLDAYIERDLKAGKITEQDAQEMIDHLVMKLRMVRFLRTPEYDELFSGDPIW
                     ATESIGGMGVDGRTLVTKNSFRFLNTLYTMGPSPEPNITVLWSEKLPLNFKKFAAKVS
                     IDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGG
                     VDEKLKMQVGPKSEPIKGDVLNFDEVMDRMDHFMDWLAKQYVTALNVIHYMHDKYSYE
                     ASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQ
                     FGNNDARVDDMAVDLVERFMKKIQKLTTYRGAIPTQSVLTITSNVVYGKKTGNTPDGR
                     RAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVR
                     KTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMEHPEKYPQLTIRVSGYAVRF
                     NSLTKEQQQDVITRTFTQTM"
BASE COUNT          905 a          868 c          861 g          918 t
ORIGIN      
        1 tttatttatt ttcactaaac ggcgaaaaat gtaataacaa ggttaaatat tggttgttga
       61 tattaaatta attgacataa tgatgttgct ttatttgttg attactccat attaattaac
      121 cgtgcagcag gaggagccag gaaaaaattc aactctattt ataattttta aaatttattt
      181 ttattaggat aatcaaaaag ttacaccgta attgcataaa agccatgcga cttacgggcc
      241 tataagccag gcgagatatg atctatatca aattctcatc tataatgctt tgttagtatc
      301 tcgtcgccga cttaataaag agagagttag tgtgaaagct gacaaccctt ttgacctttt
      361 actccctgca gcaatggcca aagtggctga agaagcaggc gtctataaag caacgaaaca
      421 tccgcttaag actttctatc tggcgattac cgccggcgta ttcatttcaa ttgcctttgt
      481 tttttatatt actgcgacaa ccggtactgg cgcgatgcct tatggcatgg cgaaacttat
      541 cgggggtatc tgtttctctt tgggactgat tctctgtgtt atttgcggcg ctgatctttt
      601 cacctctact gttctgatcg ttgtagctaa agctagcggt cgcatcacct ggggacaact
      661 ggctaaaaac tggttaaacg tctattttgg taacctgatt ggcgctctgc ttttcgtgtt
      721 actgatgtgg ctttccggcg agtatatgac tgccaacggt caatggggac ttaacgtcct
      781 gcaaaccgcc gaccacaaaa tgcaccacac ttttattgaa gctgtctgcc tcggtattct
      841 ggcgaacctg atggtttgtc tggccgtgtg gatgagctac tcaggtcgta gcctgatgga
      901 caaagcgttc atcatggtac tgcccgtcgc catgtttgtc gccagcggtt ttgagcacag
      961 tatcgcaaac atgtttatga ttcctatggg tattgtaata cgcgatttcg ctacaccgga
     1021 gttttggacc gcggttggtt cgtctccgga aagtttttct cacctgaccg tgatgagctt
     1081 catcactgat aacctgattc cggtcacgat cggtaatatt atcggcggcg gtttgttggt
     1141 cgggttgaca tactgggtca tttacctgcg tggtaacgag catcattaat ctgttgatgt
     1201 ccattacacg cagtaaataa aaaatccact taagaaggta ggtgttacat gtccgagctt
     1261 aatgaaaagt tagccacagc ctgggaaggt tttaccaaag gtgactggca gaatgaagta
     1321 aacgtccgtg acttcattca gaaaaactac actccgtatg agggtgacga gtccttcctg
     1381 gctggcgcta ctgacgcgac caccaagctg tgggacagcg taatggaagg cgttaaacag
     1441 gaaaaccgca ctcacgcgcc tgttgacttt gacacctccg ttgcttccac catcacttct
     1501 cacgacgctg gctacatcaa caaagcgctt gagaaaattg ttggtctgca gactgaagct
     1561 ccgctgaaac gtgcgattat cccgtttggc ggcatcaaaa tggttgaagg ttcctgcaaa
     1621 gcgtacaatc gcgagctgga cccaatgatc aaaaaaatct tcaccgaata ccgtaagacc
     1681 cacaaccagg gcgtattcga cgtttatact ccggacatcc tgcgttgccg taagtccggc
     1741 gtgctgaccg gtctgccgga tgcgtatggc cgtggccgta tcatcggtga ctaccgtcgc
     1801 gtagcgctgt acggtatcga ctacctgatg aaagacaaat tcgcgcagtt tacgtctctg
     1861 caatccgatc tggaaaacgg cgtaaatctg gaagcgacta tccgtctgcg tgaagaaatc
     1921 gctgaacagc accgcgctct gggtcagatc aaagaaatgg cagctaaata cggctgcgat
     1981 atctctggcc cggcgactaa cgctcaggaa gcaatccagt ggacttactt cggttacttg
     2041 gctgcggtta aatctcagaa cggcgcagca atgtccttcg gtcgtgtatc caccttcctg
     2101 gatgcgtaca tcgaacgtga cctgaaagca ggcaaaatca ccgagcaaga cgcacaggaa
     2161 atgattgacc acctggtcat gaaactgcgt atggttcgct tcctgcgtac tccggaatat
     2221 gatgaactgt tctccggcga cccgatttgg gcaaccgaat ctatcggcgg tatgggcgtt
     2281 gatggccgta ctctggtcac caaaaacagc ttccgtttcc tgaacaccct gtacaccatg
     2341 gggccgtctc cggagccgaa catcaccgtt ctgtggtctg aaaaactgcc gctgaacttc
     2401 aagaagttcg ccgctaaagt ctccatcgac acctcttctc tgcagtacga gaacgatgac
     2461 ctgatgcgtc cggacttcaa caacgatgac tacgctatcg catgctgtgt aagcccgatg
     2521 atcgttggta aacaaatgca gttcttcggc gcgcgtgcaa acctggcgaa aaccatgctg
     2581 tacgcaatca acggcggcgt tgatgaaaaa ctgaaaatgc aggttggtcc gaaatccgaa
     2641 ccgatcaaag gcgatgttct gaacttcgac gaagtgatgg atcgcatgga tcacttcatg
     2701 gactggctgg ctaaacagta tgtcaccgca ctgaacgtta tccactacat gcacgacaag
     2761 tacagctacg aagcctctct gatggcgctg cacgaccgtg acgttatccg caccatggcg
     2821 tgtggtatcg caggtctgtc cgttgcggct gactccctgt ctgccatcaa atatgcgaaa
     2881 gttaaaccga ttcgtgacga agatggtctg gctatcgact tcgaaatcga aggcgaatac
     2941 ccgcagtttg gtaacaacga cgctcgtgta gatgacatgg cggttgacct ggtagaacgt
     3001 ttcatgaaga aaattcagaa actgaccacc taccgtggcg ctatcccgac gcagtctgtt
     3061 ctgaccatca cttctaacgt tgtgtatggt aagaaaaccg gtaacacccc ggatggtcgt
     3121 cgcgctggcg cgccgttcgg accaggtgct aacccgatgc acggtcgtga ccagaaaggc
     3181 gctgtcgctt ctctgacctc cgttgctaaa ctgccgtttg cttacgcgaa agatggtatt
     3241 tcttatacct tctctatcgt tccgaacgca ctgggtaaag acgacgaagt tcgtaagact
     3301 aacctggcag gtctgatgga tggttacttc caccacgaag cgtccatcga aggcggtcag
     3361 cacctgaacg tcaacgtcat gaaccgtgaa atgctgctgg acgcgatgga acatccggaa
     3421 aaatatccgc agctgaccat ccgtgtatct ggttacgcag tacgttttaa ctccctgacg
     3481 aaagaacagc agcaggacgt tattactcgt accttcacgc agaccatgta atgggtttga
     3541 ctgaaattac gc
//
LOCUS       DAJVSD010000328         3521 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.328, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000328 DAJVSD010000000
VERSION     DAJVSD010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3521
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.328"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..2117
                     /locus_tag="OQP62_004235"
     CDS             <1..2117
                     /locus_tag="OQP62_004235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sensor domain-containing phosphodiesterase"
                     /protein_id="HCS1723618.1"
                     /translation="LLSRLISPRATIDSSYIFLAWLPLCVMFSVLFLFGRRGVAPMVG
                     GMMLTNEWNFHLPLPQAMVLLFCQTFPVLLVCAIVRWQLGARWRYGIPNQGIWLRVFW
                     LGLMTPFGIKISMHLAGHYLAFPVTISTFFGTGTAIFSIVDLLSLISAALIFTLFFYY
                     PLRMIVSPHYMRIFWRRDVAPYLAKEKRLFTLLWFATLATLLAVLCTPFETKYIAGYL
                     VPVLFIGFTIGVGKISYPLLNFSWALTALFLLSYNRNFLQGVGSEYSLAFILSVLISF
                     SICLLYMARINQRSEWLNRQWHSQALTDPLTQLPNLRALGQFLLQDAGQSVCYLRMEN
                     LEFLSRHYGMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSELLLVLTGPETEARLQYM
                     LNVLNNRKIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALT
                     QSIEAASGQTTERVLRLQKIRQALERGALVLYAQPIRDAQGKGYDEILTRLRCDDGIM
                     MPNQFIPLIAQFNLSVRFDMQVMEALLQWLSAHPSAEQGARFSVNLMPLTLLQKETAS
                     RIMQLFKRYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANY
                     ERLKRLKADIIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDL
                     LLQLGVHSLQGYLIGRPRPLGK"
     gene            complement(2170..3372)
                     /gene="nupC"
                     /locus_tag="OQP62_004236"
     CDS             complement(2170..3372)
                     /gene="nupC"
                     /locus_tag="OQP62_004236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease NupC"
                     /protein_id="HCS1723619.1"
                     /translation="MDRVLHFVLALAVVAVLALLVSSDRKKIRIRYVIQLLVIEVLLA
                     WFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFIS
                     ALIGILQHIRVLPVVIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGK
                     MSRNRMYTMAATAMSTVSMSIVGAYMTMLDPKYVVAALVLNMFSTFIVLSLINPYTVD
                     ASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIIAAMLIGFIALIAALNALFATVTG
                     WFGYSISFQGILGYIFYPVAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIAST
                     LSPRAEGIISVFLVSFANFSSIGIIAGAIKGLNEEQGNVVSRFGLKLVYGSTLVSVLS
                     ASIAALVL"
BASE COUNT          857 a          865 c          908 g          891 t
ORIGIN      
        1 ttctgctatc tcgtctcatt tctccccgcg ccacaattga ttccagctat atctttctgg
       61 cctggctacc gctctgcgtc atgttttccg tgctgttttt atttggccgc cgtggcgtcg
      121 cgccgatggt aggcggaatg atgttgacta atgaatggaa ttttcattta cctctgccac
      181 aggcgatggt gctgctattt tgccagacgt ttcccgtgtt gctggtttgc gctatcgtac
      241 gctggcagct gggcgcgcgc tggcgctacg gaatacccaa ccaaggcatc tggctacgcg
      301 ttttctggtt agggttaatg acgccgtttg gtataaaaat cagtatgcat ctggcggggc
      361 actacctggc tttcccggtg accatctcta ccttctttgg caccggcacc gctattttct
      421 cgattgtcga tttattgagt ctgatttctg ccgcgcttat ttttaccctc tttttctatt
      481 atccgctgcg aatgatagtc agcccgcact atatgcgtat tttctggcgg agggatgtcg
      541 ctccttatct cgccaaagaa aaacgcctgt ttacgcttct ctggtttgcc actctggcga
      601 cgctattagc ggtgctgtgt acgcctttcg agacaaagta tattgctggc tatctggtgc
      661 cagttctgtt cattggattt accatcggcg tggggaaaat cagctatccg ctgttgaatt
      721 ttagttgggc tctcactgcg ctattcctgc ttagctataa ccgcaatttt ctgcagggcg
      781 tgggttcaga atattcgctg gcatttatcc tttcagttct catttctttt agtatttgtt
      841 tgttgtacat ggcgcggatt aatcagcgta gcgaatggtt gaatcgacag tggcactcgc
      901 aggcattgac cgatccgttg acgcaactgc ctaacttgcg cgcgctgggg cagtttcttt
      961 tacaggatgc cgggcaaagc gtgtgttatc tacgcatgga aaacctggaa tttctgagcc
     1021 gtcattacgg tatgcagatg cgcgtgcatt gcgaacgcga ggtgtttcgc gtgttgcagc
     1081 cgctgctgct ggaaaaggag aaaattttcc atctgccggg cagtgaatta ttgctggtat
     1141 tgacgggacc ggagacggaa gcccgcctgc aatatatgct caatgtgctt aataaccgca
     1201 aaatttactg gaacaatacc ggtctggaca tggaatacgg cgcatcgtgg ggaacattcg
     1261 atggtcgcca ggaaaccttg caaccgctgt tggggcaatt aagctggctg gcggagcaat
     1321 cctgctcgca ccgtcgggtg cttgcactga cccagagtat tgaagccgct tccgggcaga
     1381 cgacggaacg ggtgctgcgg ttgcagaaaa tccgtcaggc gctggagcgc ggcgcgctgg
     1441 ttttgtatgc gcaacccatt cgcgacgcgc agggaaaagg gtatgacgag attctgacgc
     1501 ggcttcggtg cgacgacggt atcatgatgc cgaatcagtt cattccgctt atcgcccagt
     1561 ttaacctgag cgtacggttt gatatgcagg tgatggaagc gctcctgcaa tggttgtccg
     1621 cgcatccttc ggcggagcag ggggcgcgtt tttcggttaa tttgatgccg ctgacgctgc
     1681 tgcaaaaaga gacggcgtcg cgcattatgc agctttttaa acgctatggc gtcccgcctg
     1741 cttcggtcat catcgaaatt actgaagaac aggccttctc tcattccgaa atcagtatgc
     1801 acaatatcaa ccagctgcgt aagtttggcc taaaaatcgc cattgatgat ttcggcaccg
     1861 gttatgcaaa ctatgaacgg ctaaaacgcc tcaaggcgga catcattaaa atcgacggtt
     1921 gtttcgtaaa agatattctg acggactccc tggatgcgat gatcgtgaaa tccatcactg
     1981 atttagcgaa agcgaaatcg ttgagcgtcg tggctgagtt tgttgaaacg cctgcgcagc
     2041 gcgatctgct attgcagctt ggcgtacata gtttgcaggg atatctgatt ggccgcccgc
     2101 gcccgttagg caaataagcg gcataaaaaa accggggata gctccccggt ttctacatta
     2161 aacgcagact tacagtacca gcgccgcgat agaggcggac agtacgctca ccagcgtaga
     2221 accgtaaacc agtttcagac caaaacggga aaccacgttg ccttgctctt cgttcaggcc
     2281 tttaatcgcg cccgcaataa taccgatgga agagaagttc gcgaaggaca ccaggaagac
     2341 ggagataatg ccttcagcgc gtggagagag ggtagaggcg attttctgca gatccatcat
     2401 cgccacgaat tcgttggaaa ccagtttggt cgccatgata cttcctacct gcagcgcttc
     2461 actggacggt acgcccatta cccatgcgac cgggtagaag atgtaaccca gaatgccctg
     2521 gaaggagatg ctgtagccga accaaccggt aaccgttgcg aacagcgcgt tcagcgccgc
     2581 gatcagcgcg atgaagccga tcagcatcgc cgcgatgata atcgccactt taaaacctgc
     2641 cagaatgtac tcgcccaaca tttcgaagaa actttggcct tcatgcaggt tcgacatctg
     2701 aatattttct tcgctggcat caacggtata ggggttgatc agcgacagaa cgataaaggt
     2761 gctgaacatg ttcagaacca gcgctgcgac cacatattta gggtccagca tggtcatata
     2821 cgcgcccacg atagacatgg aaacggtaga catcgccgtt gcagccatgg tgtacatgcg
     2881 gttacgggac attttaccga gaatatcttt ataagcgata aagttctcag actggccgag
     2941 gatcagcgag ctgacggcgt taaaagattc cagtttgccc ataccgttta ctttggatag
     3001 caggaaacca atagcgcgga tgaccactgg cagaacacgg atatgctgga gaataccgat
     3061 caacgcggaa ataaagacga tcgggcacaa tactttcagg aagaagaacg ccaaaccttg
     3121 atcgttcata ctgccaaaga cgaagtttgt cccttcgttg gcaaatccga gcagtttttc
     3181 aaacatctcg gagaaacctt ttacgaagcc aaggccaaca tccgagttca ggaagaacca
     3241 ggccagtaac acttcgataa caagtaactg aatgacgtaa cgaatgcgaa tttttttacg
     3301 gtcgctgcta accagcagtg cgagtaccgc aacaacggca agcgccagga caaaatgaag
     3361 gacgcggtcc atatttgctc caaatatgag gcaggtttaa ttttcgtgca cattctatgc
     3421 aacagctgta aagaaaacga gatccaacac acactataat aaggacctgt gacgagattc
     3481 aaaattagtg atctgtaata cacttttact gtactgaata t
//
LOCUS       DAJVSD010000329         3399 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.329, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000329 DAJVSD010000000
VERSION     DAJVSD010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3399
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.329"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            65..1981
                     /gene="dnaK"
                     /locus_tag="OQP62_004237"
     CDS             65..1981
                     /gene="dnaK"
                     /locus_tag="OQP62_004237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001737966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HCS1723620.1"
                     /translation="MGKIIGIDLGTTNSCVAIMDGTQARVLENAEGDRTTPSIIAYTQ
                     DGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIGADNGDAW
                     LDVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI
                     AGLEVKRIINEPTAAALAYGLDKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEV
                     LATNGDTHLGGEDFDTRLINYLVDEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA
                     QQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDI
                     NDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLL
                     DVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASD
                     NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN
                     EEEIQKMVRDAEANAESDRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE
                     SALSALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQAGSADASANNAKDD
                     DVVDAEFEEVKDKK"
     gene            2067..3206
                     /gene="dnaJ"
                     /locus_tag="OQP62_004238"
     CDS             2067..3206
                     /gene="dnaJ"
                     /locus_tag="OQP62_004238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HCS1723621.1"
                     /translation="MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAE
                     AKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFGGGFNGGADFSDIFGDVFG
                     DIFGGGRGRQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQ
                     PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVK
                     IPAGVDTGDRIRLAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAM
                     AALGGEIEVPTLDGRVMLKVPSETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPV
                     GLSEKQKQLLKDLQESFGGPTGEKNSPRSKSFFDGVKKFFDDLTR"
BASE COUNT          890 a          813 c          960 g          736 t
ORIGIN      
        1 acgtttcgcc cttattacag attcacaacc acatgatgac cgaattttta gtggagacgt
       61 ttagatgggt aaaattattg gtatcgacct gggtactacc aactcttgtg tagcgattat
      121 ggatggaacg caggcacgcg tgctggagaa cgccgagggc gatcgcacta cgccttctat
      181 cattgcttat acccaggatg gtgaaactct ggttggtcag ccggctaaac gtcaggcagt
      241 gacaaacccg caaaacaccc tgtttgcgat taaacgcctg attggccgcc gcttccagga
      301 cgaagaagtt caacgtgacg tttctatcat gccgtacaaa atcatcggcg ccgacaacgg
      361 cgacgcatgg cttgatgtga aaggtcagaa aatggcgccg ccgcagattt ctgccgaagt
      421 gctgaagaaa atgaagaaaa cggctgaaga ttatctgggc gaaccggtaa ctgaagcggt
      481 tatcaccgta ccggcttact ttaacgatgc gcagcgtcag gctaccaaag atgctggtcg
      541 tatcgcgggg ctggaagtta aacgtatcat caacgaaccg actgccgcag cgctggctta
      601 cggtctggat aaagaagtcg gcaaccgtac tatcgcggtt tacgacctcg gtggtggtac
      661 tttcgatatc tctattatcg aaatcgacga agttgatggc gaaaaaacct ttgaagttct
      721 ggcaaccaac ggtgataccc acctgggtgg tgaagacttc gatacccgcc tgatcaacta
      781 cctcgttgac gagtttaaga aagatcaggg catcgacctg cgtaacgatc cgctggccat
      841 gcagcgcctg aaagaagccg cagaaaaagc caaaatcgag ctgtcttctg cgcagcagac
      901 cgacgtgaac ctgccgtaca ttaccgcaga tgccaccggt ccgaaacaca tgaacatcaa
      961 agtgacccgt gcgaaactgg aaagcctggt tgaagatctg gtgaaccgtt ctatcgagcc
     1021 gctgaaagtc gcactgcagg acgctggcct gtccgtgtct gatatcaacg acgtgatcct
     1081 cgtcggcggt cagacccgta tgccaatggt gcagaaaaaa gtggctgagt tcttcggtaa
     1141 agagccgcgt aaagacgtta acccggacga agctgtggct atcggcgcag cggtacaggg
     1201 cggcgtattg accggtgatg tgaaagacgt actgctgctg gacgttaccc cgctgtctct
     1261 gggtatcgaa acgatgggtg gcgtgatgac tccgcttatc accaaaaaca ccaccatccc
     1321 gaccaagcac agccaggtgt tctctactgc ggaagacaac cagtctgcgg taaccatcca
     1381 tgtgctgcag ggtgagcgta aacgtgcgtc tgataacaaa tctctgggtc agttcaacct
     1441 ggatggcatc aacccggcgc cgcgcggtat gccgcagatc gaagtcacct tcgatatcga
     1501 tgctgacggt atcctgcacg tctccgcgaa agataaaaat agcggtaaag agcagaagat
     1561 cactatcaag gcgtcttctg gtctgaacga ggaagaaatt cagaaaatgg ttcgcgatgc
     1621 agaagcgaac gctgaatccg accgtaagtt cgaagagctg gttcagaccc gtaaccaggg
     1681 tgaccatctg ctgcacagca cccgtaagca ggttgaagaa gcaggcgata aactgccggc
     1741 tgatgacaaa accgctatcg agtctgcgct gagcgcgctg gaaactgccc tgaaaggcga
     1801 agataaagcc gctatcgaag cgaaaatgca ggagctggcg caggtttccc agaaactgat
     1861 ggaaatcgct cagcagcaac atgcgcagca gcaggctggc tccgccgacg cttctgcaaa
     1921 caatgcgaaa gatgacgacg ttgtcgacgc tgagtttgaa gaagtaaaag ataaaaaata
     1981 atcgcccttt gaacgggtaa ttactggcac gggcgaagag gtttcctctc cgcccgtgta
     2041 tgcatgttaa gggcagataa aaagagatgg cgaaaagaga ttactacgag attttaggcg
     2101 tttccaaaac agcggaagag cgtgaaatca aaaaggcgta taagcgcctg gccatgaaat
     2161 atcatccgga ccgcaatcag ggtgataaag aggccgaagc taagtttaaa gagattaaag
     2221 aagcctacga agtgctgacc gatgcgcaaa aacgcgcagc ctacgatcag tatggtcacg
     2281 ccgcgtttga acaaggcggg atgggcggcg gatttggcgg cggctttaat ggcggcgctg
     2341 atttcagtga tatctttggt gacgtttttg gcgatatctt tggcggcggg cgtggtcgcc
     2401 aacgtgcggc gcgtggggct gatttgcgtt ataacatgga tctcaccctg gaagaagcgg
     2461 tgcgtggcgt gaccaaagag atccgtattc cgacgctgga ggagtgcgac gtttgccacg
     2521 gcagcggcgc gaaagctggt acgcaaccgc aaacctgtcc gacctgtcat ggttctggtc
     2581 aggtacagat gcgccaggga ttctttgctg tacagcagac ctgcccacac tgtcagggcc
     2641 gcggtacgct gatcaaagat ccgtgccata aatgtcacgg tcatgggcgt gttgaaaaga
     2701 gtaaaactct gtccgttaaa atcccggcgg gcgtggatac cggcgatcgt attcgtctgg
     2761 caggcgaggg cgaagcgggc gagcatggcg caccggcagg cgacttgtac gttcaggtcc
     2821 aggtgaaaca acaccctatt ttcgagcgtg aaggcaataa tctttattgc gaagtgccga
     2881 tcaactttgc gatggcggcg ctcggcggtg aaattgaagt gccgacgtta gatggtcgcg
     2941 tgatgctgaa agtaccgagc gaaacacaaa cgggcaagct gttccgtatg cgcggcaaag
     3001 gcgtgaagtc cgtacgcggt ggcgcgcagg gcgatttgct gtgccgtgtg gtagttgaaa
     3061 cgccggtcgg tctgagcgaa aaacagaagc aattgctaaa agatcttcag gaaagttttg
     3121 gcggcccgac gggagagaaa aacagcccgc gttcaaaaag cttctttgac ggcgtgaaaa
     3181 aattctttga cgatttgact cgctaacctt tttcccgttg tatttttctt cagcccgggt
     3241 gtatgtatat ccgggctttt tttctgcctg tacgcgccca ggcttctgct aaacgcatcg
     3301 tatcctctca tttgttggta ttttgtttta ctgataaaca aattgatgtt aatcagcagg
     3361 tttgcatacg ctcattttaa aaaaaaatgt aatgtgatg
//
LOCUS       DAJVSD010000330         3388 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.330, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000330 DAJVSD010000000
VERSION     DAJVSD010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3388)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3388)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3388
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.330"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(191..943)
                     /locus_tag="OQP62_004239"
     CDS             complement(191..943)
                     /locus_tag="OQP62_004239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1723622.1"
                     /translation="MNSRQQSILQMVVDKGQMSVAELAKITGVSEVTIRQDLNTLEKQ
                     SYLRRAHGFAVSLESDDVETRMMTNYTLKRRLAEFAASLVSPGESVFIENGSSNALLA
                     RTLAEQKDVTIITVSSYIAHLLKETPCEVILLGGIYQKKSESMVGPLTRQFIHQVHFS
                     KAFIGIDGWQADTGFTGRDMMRSDVVNAVLEKGSEAIVLTDSSKFGCVHPYPLGPLSR
                     FHRVITDSKISASDQMQLEHAGLLVNVIGSSV"
     gene            complement(1030..1209)
                     /locus_tag="OQP62_004240"
     CDS             complement(1030..1209)
                     /locus_tag="OQP62_004240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001279854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723623.1"
                     /translation="MSDIEAQRIAARIDTVLDILVAGDYHSAINNLEILRAELLDQVK
                     DGISPSQAPGSPWEI"
     gene            complement(1331..3313)
                     /gene="pdeR"
                     /locus_tag="OQP62_004241"
     CDS             complement(1331..3313)
                     /gene="pdeR"
                     /locus_tag="OQP62_004241"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-GMP phosphodiesterase"
                     /protein_id="HCS1723624.1"
                     /translation="MMKQIQEQTALNPLHSHWRLADDRNVLYLSPTGETDAEKTVELS
                     PEQAGRIREITAITSSLLITLLIEKQVTAVHLVGRKINNREWAGSLATWPDTPAVAPT
                     QAQELSFAEQIVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMSR
                     REAVASRHYIENFFRNGNAYEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFLICAGT
                     DITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFKK
                     INDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRI
                     LTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQFCVF
                     SPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWRGEVRSLEALVRWQSPERGLI
                     PPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGINLRVAVNFSARQLADQTLFT
                     ALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL
                     SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAF
                     LTKNGVNERQGFLFAKPMPAVSFERWYKRYQTKKMR"
BASE COUNT          857 a          838 c          826 g          867 t
ORIGIN      
        1 aagagatttt ccgtaaaacc tgattgcgca ggggtatatc acgcaggtga tagtcacttc
       61 ctgttatttc gctaatatta attttacgac gttacgctcg ttacaacagg taaatagtct
      121 taattgggat gtcagaaaag tcttagagag aggatgattt gccatagagg gcaaaccatc
      181 gggaaatatt ttaaacggat gagccaataa cattgactag cagccctgca tgctctaact
      241 gcatttgatc gctggcggaa attttggaat ccgtaatgac acgatggaag cgagagagcg
      301 ggcccagggg atagggatgc acacagccaa atttggagct gtcggtgagg acaatcgctt
      361 ctgagccttt ttccagaaca gcgttaacca catccgatcg catcatatcg cgtccggtaa
      421 agccggtatc agcctgccag ccatcaatac cgataaatgc tttgctgaaa tgcacttgat
      481 ggataaactg tcgcgtcaac ggccctacca tgctttcact ttttttctga tagattccac
      541 cgaggagaat gacttcgcaa ggggtttctt tgagcagatg cgcgatataa ctgctcacgg
      601 tgatgatcgt gacatctttt tgttccgcca gcgtccgggc caatagcgca ttgctactgc
      661 cattttcaat aaaaacggat tccccaggac tgaccagcga ggcggcgaac tccgccagtc
      721 ggcgttttag cgtgtagttc gtcatcatgc gagtctctac gtcatcgctc tcaagcgaaa
      781 cggcgaaacc gtgcgcacgg cgtaaatagc tctgtttttc cagggtattc agatcctgac
      841 gaatcgtgac ttcagatacg ccggtaattt tcgccagttc agcaacgctc atctggcctt
      901 tatcaaccac catttgcaaa attgattgtt gtcgggagtt catagtatta attttattcg
      961 ttaagaggag tcaacagaca gtcagagagc cgggaagggc taacggccat cccggacaaa
     1021 taatcgctat cagatttccc agggcgaccc gggagcctgg gatggcgaga taccgtcttt
     1081 aacctgatct aacagctctg ctctcaatat ttcaaggtta ttgatggccg agtggtaatc
     1141 gccagcaaca aggatatcca gcacggtatc aatgcgtgcg gcaattcgtt gtgcttcgat
     1201 atcagacatg tttgtcatcc ttaatgtcag aaaaggtttc aattcatgat gcagaaatta
     1261 atctgaaaag agaagggaaa aatagggcta tgcctgtctg cacaggctgt tctccctatt
     1321 atcgccgcca ttaacgcatt tttttcgtct gataacgttt gtaccagcgt tcaaaagaaa
     1381 cggcgggcat aggtttggcg aataaaaagc cctgtcgttc attgacgccg ttttttgtca
     1441 ggaaggcatc ttctttagca ttttccacgc cttcggcaat cacttgtaaa tttagcgcct
     1501 gagccaccgc gacaatcgcc cgaaccagag attgcgacag cggttgctta tggatatctc
     1561 tgacgaaagc ctgatccagt ttaacggcat caatagggaa ccgggcgagt tgagaaagcg
     1621 aagaataccc tgtgccaaaa tcatccagat gaatctgggc gccgagctga ctaaattgct
     1681 ggataaccga tagcgccagc gtgtcgtttt cgatcaggca gctttccgtt agctcgacat
     1741 cgattgggca atactcaaaa ttcagatcgt acaaagcctg tttaagcgca gtaaaaagcg
     1801 tctggtcggc cagttgtcgc gccgaaaagt taacggctac gcgcaagtta atccccttat
     1861 cgcgccattt cgcaatctgg cgaactacat ccagaatcac ccagcggccc agcgggacga
     1921 tgagtcctga ctcttcggcg tatgagatga actccagcgg cggaattaat ccgcgttccg
     1981 gcgattgcca gcgtaccagc gcttccaggc tacgtacttc gccgcgccag gtaattttgg
     2041 gctgatagtg aataagtaac tggtcgtttt ccagcgcttt tcgcaggttt gtatccagcc
     2101 agtgatagtc aaatacgcgc tgattcattt ccggcgaaaa aacgcagaac tgaccgcggc
     2161 cgccttcttt ggcgttatac attgcggtgt cggcagtgcg aatgagactt tcgctgtcct
     2221 gtccgtgccg gggggccaac gaaatgccaa tggcgcatcc cgtgtaaact tcaatgagtc
     2281 caatgcgaaa cggttgccgc agccgggtaa ggattcgtga ggctactgct tccagcgcgg
     2341 cctgagacgt atgggcaacg aggacaatga attcatctcc ccccagtctg gccagcaatt
     2401 gatcttcctc cagacaactc aacagcgcca gtgaaacggc ctgtaagagc tgatcgccaa
     2461 acatatgccc ataggcgtca ttaattttct tgaagttatc cagatcgaga taaacgatac
     2521 ccacctgcga ctcgccagcc gaggcaatag catgattaat aaattcatga atagcattgc
     2581 gattgggcag gccggtgacg gtgtctgtat tcgccagtat gcgtaaacgc tcctgagccc
     2641 gcctttcttc ggtgatatcc gtgcctgcgc agatcagaaa gatttcgttt tttccgctac
     2701 cgttatggac gaatttatta cgaaataaga acagacgttg gcctttacga gtctttatcc
     2761 agcgttcgat ttcataggca ttgccattgc gaaaaaaatt ctcaatgtag tgtcgggagg
     2821 caaccgcctc ccggcgactc ataaataatt taaatacgct ttgaccaatt acatctcgct
     2881 cttttaagcc cgtgtactct tcgcataacc gattaaatcg acagattttt ccccgactat
     2941 ccagtatcgc aatgactgag ttggcttctg atacgatttg ctcggcaaaa gagagttcct
     3001 gcgcctgcgt tggcgcgacg gcaggcgtat caggccaggt tgccaggctg ccagcccatt
     3061 cacggttatt aatcttacgg cctaccaggt gcacagcggt aacctgtttt tctatcaaca
     3121 acgttatcag cagactggac gtaatcgccg ttatttcccg gatacgcccg gcttgctccg
     3181 gcgatagctc aaccgttttt tctgcatccg tttcacctgt cggggagaga tacagcacgt
     3241 tgcggtcatc agccagacgc cagtgagagt gaaggggatt tagcgccgtt tgttcctgaa
     3301 tctgtttcat catgcgtacc atcccattta agcgccaggt gcccgaaaag aaaggttagc
     3361 catgttataa ataagggtaa ttatggct
//
LOCUS       DAJVSD010000331         3386 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.331, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000331 DAJVSD010000000
VERSION     DAJVSD010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3386
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.331"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..913
                     /gene="sptP"
                     /locus_tag="OQP62_004242"
     CDS             <1..913
                     /gene="sptP"
                     /locus_tag="OQP62_004242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SPI-1 type III secretion system effector
                     GTPase-activating protein SptP"
                     /protein_id="HCS1723625.1"
                     /translation="ADRFSQWGTCGGEVERWIDKASTHELTQAVKKIHVIAKELKNVT
                     AELEKIKAGASMPQTMSGPTLGLARFAVSSIPINQQTQVKLSDGMPVPVNTLTFDGKP
                     VALAGSCPKNTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPAYFRGSYTFGEVH
                     TNSQKVSSASQGGAIDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRV
                     KNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSR
                     NNRMLEDASQFVQLKAMQAQLLMTTAS"
     gene            complement(967..1449)
                     /gene="iagB"
                     /locus_tag="OQP62_004243"
     CDS             complement(967..1449)
                     /gene="iagB"
                     /locus_tag="OQP62_004243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system invasion protein
                     IagB"
                     /protein_id="HCS1723626.1"
                     /translation="MHYFFIIVIWLLSINTAWADCWLQAEKMFNIESELLYAIAQQES
                     AMKPGAIGHNRDGSTDLGLMQINSFHMKRLKKMGISEKQLLQDPCISVIVGASILSDM
                     MKIYGFSWEAVGAYNAGTSPKRSDIRKRYAKKIWENYRKLKEMSAEEKNKRLSIAVNK
                     "
     gene            complement(1467..3128)
                     /gene="hilA"
                     /locus_tag="OQP62_004244"
     CDS             complement(1467..3128)
                     /gene="hilA"
                     /locus_tag="OQP62_004244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator HilA"
                     /protein_id="HCS1723627.1"
                     /translation="MPHFNPVPVSNKKFVFDDFILNMDGSLLRSEKKVNIPPKEYAVL
                     VILLEAAGKIVSKNTLLDQVWGDAEVNEESLTRCIYALRRILSEDKEHRYIETLYGQG
                     YRFNRPVVVVSPPAPQPTTHTLAILPFQMQDQVQSESLHYSIVKGLSQYAPFGLSVLP
                     VTITKNCRSVKDILELMDQLRPDYYISGQMIPDGNDNIVQIEIVRVKGYHLLHQESIK
                     LIEHQPASLLQNKIANLLLRCIPGLRWDTKQISELNSIDSTMVYLRGKHELNQYTPYS
                     LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD
                     HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEAL
                     QTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF
                     LSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDN
                     NPGLLPLVLVAHGEAIAEKMWNKFKNEDNIWFKRWKQDPRLIKLR"
BASE COUNT          951 a          712 c          748 g          975 t
ORIGIN      
        1 agcagacagg ttctcacaat ggggaacctg tgggggagag gttgagaggt ggattgataa
       61 agcctctact catgaattaa cccaagcggt aaaaaaaatt cacgttattg ctaaagaact
      121 gaaaaacgtt acagctgaac ttgagaaaat aaaagccggt gcgtcaatgc cacagacgat
      181 gagcggaccg acactgggcc tggcacggtt tgcggtcagc agcattccca ttaatcagca
      241 aacccaggtg aaactgagcg atggaatgcc tgtgccagtg aatacgttaa cttttgacgg
      301 taagcctgtg gcattagccg gttcgtgccc aaaaaatacg ccggatgcgc tggaagcgca
      361 tatgaaaatg cttcttgaaa aagaatgttc gtgcctggtg gtgttaacgt cggaagatca
      421 gatgcaggca aaacaattac cagcctattt cagagggagc tacacctttg gcgaggtgca
      481 taccaacagc caaaaagtga gctcagccag tcagggagga gcgatagacc aatacaatat
      541 gcaactgtcc tgcggggaaa agcggtatac aatcccggta ttgcatgtga aaaattggcc
      601 agatcaccag ccgttaccgt ctactgatca gttagaatac ctggcggata gggtgaaaaa
      661 tagtaaccaa aatggcgcgc cggggcgtag ttcatcagat aagcatttac cgatgattca
      721 ttgtctgggc ggagtgggaa gaaccggaac gatggcggcg gctcttgtac ttaaggataa
      781 tcctcatagt aatctggagc aggtacgtgc agatttccgg aattcacgga acaatagaat
      841 gctggaagac gcctcacagt ttgtacaact aaaagcaatg caagcccagt tgcttatgac
      901 gacggcaagc tgataaaaac atagcttact tttagaatta tctgaaagta agctattcct
      961 gtataattat ttgtttaccg cgatagaaag tcttttgttt ttctcttctg ctgacatctc
     1021 ttttaatttt ctgtaattct cccaaatttt tttagcataa cgtttcctta tatccgatcg
     1081 tttcggcgac gtcccggcat tataagcgcc aacggcctcc cagctaaaac cgtagatttt
     1141 catcatatct gataaaatgg atgcgcccac aatgacagaa atgcagggat cctgtaacaa
     1201 ctgtttttca ctaatcccca tttttttcag ccttttcata tggaagctgt taatttgcat
     1261 caggccaaga tcggttgaac catctcggtt atgaccaatg gcgccaggtt tcatcgccga
     1321 ttcctgctgg gcgatagcgt aaagtagttc ggattcaata ttgaacattt tttcagcctg
     1381 aagccagcaa tcagcccatg ccgtatttat gctaagcaac cagattacga tgataaaaaa
     1441 ataatgcata tctcctctct cagattttac cgtaatttaa tcaagcgggg atcctgtttc
     1501 catcttttga accaaatatt gtcttcgttt ttaaatttat tccacatttt ctcggcaata
     1561 gcttcgccgt gggcaaccag cactaacggt aataatcccg gattattatc tatacgctgt
     1621 tcactttcca gaaattctct tatcgtcggt aaggcacgct cactattctg acaatattca
     1681 gcgtaaagaa gattaacagc aataagtcct gttatttcct gcgtggatat ttctttagtt
     1741 aattttcgtg ccagttcatg tttaccttta agcgaaagaa acataacctg catacttaat
     1801 aatattggat tatcctgcag gtgttgtgag cgtaattcat cgcctaaacg tatagcatca
     1861 tcaataccgg tatgataata ggtaatccac agcttagtga tccctgcggc tgcgcgcgtt
     1921 gggtccaatt ttaaacactc gttaatcgtt tgtaaggcct cctccaactg accagccatg
     1981 aaaagattcc agccataata atatttaata tctgcagaaa tgggcgaaag taagttagct
     2041 tgtttgaata gcaaactccc gacgatgtat tctgagtgaa tcgtattaat tagccccagt
     2101 aatcctaaag cttgtggatt attgtggtcc agctctgtcg ccttaatcgc atgttcttta
     2161 gctttgatca ttgcgttttg tttatcaaaa atccccattt gcgccatgct gaggtagcat
     2221 tctgccagcg cacagtaagg cgcaatgctg tttggcgaca tattaacgca ttgagtcagc
     2281 aatttaagcg cttgctgtaa gctatagggg gtgtattgat ttaactcatg cttaccgcgt
     2341 aagtagacca tggtactgtc aatcgaattt agctcgctaa tttgctttgt gtcccagcga
     2401 agtccgggaa tacatctgag caaaagattc gcaattttgt tttgcaagag agaagcgggt
     2461 tggtgttcta tcaacttaat gctttcctgg tgcagcaggt gataaccttt aacccgaact
     2521 atctcgatct gtacaatatt atcattacca tcgggtatca tctgcccgga gatataataa
     2581 tcggggcgta attgatccat gagctcaaga atatccttaa cactgcggca gttcttcgta
     2641 atggtcaccg gcagcacgct caggccaaag ggcgcatact gcgataatcc cttcacgata
     2701 gagtaatgca gactctcgga ttgaacctga tcctgcatct gaaaaggaag tatcgccaat
     2761 gtatgagtcg taggttgcgg cgctggcgga gacaccacta cgaccggacg attaaaccga
     2821 taaccctgtc cgtacagtgt ttcaatgtaa cgatgctctt tatcttccga cagaatacgt
     2881 cgtaaggcat agatacagcg ggtaagagat tcttcgttaa cttccgcgtc gccccatact
     2941 tggtccaata aggtgttttt actcacaatc ttgccggcgg cttcgagcag gatgaccaga
     3001 acggcatatt cttttggcgg aatattgact ttcttttctg agcgtagcag ggagccgtcc
     3061 atgttgagta tgaaatcatc aaagacgaat tttttattcg atacaggaac aggattaaaa
     3121 tgtggcatga taatagtgta ttctcttaca gggtgaaaag ttataatagc taatacaagt
     3181 cgttaggata gaatctactg tttcagtaat tctgctgcta gtactaacgg tcaggttgag
     3241 cttttattat gagcttaatg tcatattgta cgggctcggg tttatatgtt tttaacattt
     3301 gattatttag cttatgcctg tgctttaaat aactgacatg ttggtaatga tattgttata
     3361 actaaccgtg attgtcgaat ggacgc
//
LOCUS       DAJVSD010000332         3360 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.332, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000332 DAJVSD010000000
VERSION     DAJVSD010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3360
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.332"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..1256)
                     /locus_tag="OQP62_004245"
     CDS             complement(<1..1256)
                     /locus_tag="OQP62_004245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HCS1723628.1"
                     /translation="MQTIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGL
                     KNVWGDTPRVVEMQSEGGAIAAVHGALQTGSLSTSFTSSQGLLLMIPTLYKLAGQLTP
                     FVLHVAARTVATHALSIFGDHSDVMAVRQTGCAMLCAASVQEAQDFALIAHRATLKSR
                     VPFIHFFDGFRTSHEINKIIPLTDETILNLMPQAEIDAHRARALNPEHPVIRGTSANP
                     DTYFQSREATNPWYNAVYDHVEEAMKAFGDATGRQYQPFEYYGHPQAERVIIMMGSAL
                     GTCEEVVDELLIRGEKVGVLKVRLFRPFSAKHLLQALPETVRAIAVLDRTKEPGAQAE
                     PLYLDVMTALAEAFNNGERETLPRTIGGRYGLSSKEFGPACVLAVFNELSRAKPKPRF
                     TVGIYDDVTNLSLPLPENTLPGSAKL"
     gene            complement(1317..1628)
                     /locus_tag="OQP62_004246"
     CDS             complement(1317..1628)
                     /locus_tag="OQP62_004246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase"
                     /protein_id="HCS1723629.1"
                     /translation="MAKHAPQLPAEQVRYCKPTIITRHIPPKTLRAFLSPLFIHPNDT
                     ALNNRQQKLTRREAKRAFMRFINIYWQFFTSFRQEIAILLPPGTQKRKWGLKGFAKIK
                     G"
     gene            1532..1798
                     /locus_tag="OQP62_004247"
     CDS             1532..1798
                     /locus_tag="OQP62_004247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015964583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing protein"
                     /protein_id="HCS1723630.1"
                     /translation="MRAAFWVGCAALLLSACSSEPVQQATAAHVSPGMKAAMSSAGEA
                     NCAMIGGSLSAARQLDGSVIGMCALPNGKRCSEQSLAAGSCGSY"
     gene            complement(1842..2252)
                     /gene="hslJ"
                     /locus_tag="OQP62_004248"
     CDS             complement(1842..2252)
                     /gene="hslJ"
                     /locus_tag="OQP62_004248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein HslJ"
                     /protein_id="HCS1723631.1"
                     /translation="MKKIVTLVALSIIMTGCVSSGKVSVKREQLEHHRFVLESVNGKT
                     VTGPELSFGEDMTVSGKMCNQFTGEGKLSDGELKVKNLAMTRMMCADPQLNALDGTLS
                     ELFSKGAQVDLTANQLTLATAETTLMYKLADLAH"
     gene            complement(2363..3352)
                     /gene="ldhA"
                     /locus_tag="OQP62_004249"
     CDS             complement(2363..3352)
                     /gene="ldhA"
                     /locus_tag="OQP62_004249"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HCS1723632.1"
                     /translation="MKLAVYSTKQYDKKYLQQVNEAFGFELEFFDFLLTEKTAKTANG
                     CEAVCIFVNDDGSRPVLEELKKHGVKYIALRCAGFNNVDLDAAKELGLQVVRVPAYSP
                     EAVAEHAIGMMMTLNRRIHRAYQRTRDANFSLEGLTGFTMHGKTAGVIGTGKIGVAAL
                     RILKGFGMRLLAFDPYPSTAALDLGVEYVDLQTLFAESDVISLHCPLTPENYHLLNHA
                     AFDQMKNGVMIINTSRGALIDSQAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVI
                     QDDVFRRLSACHNVLFTGHQAFLTAEALISISETTLQNLSQLEKGEACPNALF"
BASE COUNT          755 a          875 c          899 g          831 t
ORIGIN      
        1 tccagtttag cgctgccggg cagggtattt tccggtaatg gcagcgagag attagtgacg
       61 tcatcataaa tgcccaccgt aaaccgtggc ttgggtttcg cgcggctgag ttcattaaag
      121 accgccagta cgcacgccgg gccgaactct ttggatgata gcccataacg gccgccaatg
      181 gtgcgcggca atgtttcgcg ctcgccatta ttaaaggctt ccgccagtgc ggtcatcacg
      241 tccagataaa gcggctcggc ctgggcgcca ggctctttgg tgcgatccag cacggcgata
      301 gcgcgaacgg tttccggtaa tgcttgtaac aaatgtttgg cggagaaggg gcggaacaga
      361 cggactttca gaacgccgac cttttctccg cgtatcagta gctcgtccac gacctcttcg
      421 caggtgccga gggcggagcc catcataatg atgacccgtt cagcctgggg atgaccataa
      481 tattcaaatg gctggtactg gcggcctgta gcatcgccaa atgccttcat cgcctcttca
      541 acatgatcat aaacggcgtt gtaccacggg ttggtcgctt cgcgagactg gaagtaggta
      601 tccggattcg cagaagttcc acgaatcacc ggatgctccg gattcagcgc gcgggcgcgg
      661 tgagcgtcga tctccgcctg cggcatcagg ttcagaatgg tttcatccgt tagcggtata
      721 attttgttga tttcatgcga tgtacggaag ccatcaaaaa aatgaataaa cggaacgcgg
      781 cttttcagcg tagccctgtg cgcgatcagc gcaaaatcct gcgcttcctg aacgctggcg
      841 gcgcataaca tcgcgcagcc tgtctggcgg accgccatca catcggaatg gtcgccaaaa
      901 atagaaagcg cgtgtgtggc gacggtgcgt gcggcaacgt gcagtacaaa cggcgtgagc
      961 tgccccgcca gtttatacag cgttgggatc atcagcagca gcccctgcga tgatgtaaat
     1021 gacgtagaaa gcgaaccggt ttgtaacgca ccgtgaacgg cggcgatcgc accgccttcc
     1081 gactgcatct ctaccacacg cggcgtatcg ccccagacat ttttaagccc attgccggcc
     1141 caggcatccg cttgttcagc cattgttgaa ctgggcgtaa tcgggtaaat ggcgataacc
     1201 tcgctggtac ggaacgccac cgacgctact gcgccattac cgtcaatcgt ttgcatatga
     1261 cacccttaca ttgcgcaaaa aagagggaca cgcataatcg tgagcgtatc ctgtagttat
     1321 ccttttattt tagcaaagcc cttcaagccc cattttcgct tttgtgtccc tggcgggagg
     1381 agaatggcga tttcttgccg aaaagacgta aaaaattgcc aataaatgtt aatgaagcgc
     1441 ataaatgcgc gctttgcctc tcgacgcgtc agtttctgct gcctattatt tagggcggtg
     1501 tcgtttggat gaataaacag aggggagaga aatgcgcgca gcgttttggg tgggatgtgc
     1561 cgcgttatta ttgtcggctt gcagtagcga acctgttcag caggcaactg cggcgcatgt
     1621 ttcgccaggg atgaaagcgg cgatgtccag cgccggcgaa gcgaattgcg ctatgattgg
     1681 cggttcgctt tcagcggccc ggcagcttga tggttcagta attggtatgt gcgcgctacc
     1741 caacggcaaa cgttgtagcg aacagtcgct tgccgccgga agctgcggga gttattaagc
     1801 gcggcgtttc gcctgacgcg tataactttt cacttaatgg cttagtgcgc taaatccgcc
     1861 agtttataca ttagcgttgt ttctgccgtc gccagcgtta attggttcgc agttaaatcg
     1921 acttgcgctc ctttgctgaa gagctcgctg agggtgccgt ccagcgcatt aagctgcgga
     1981 tcggcgcaca tcattcgggt catcgctaaa tttttcactt ttaattcgcc gtccgatagt
     2041 tttccttcgc cggtgaattg attgcacatt ttgccggata ccgtcatgtc ctcgccaaag
     2101 ctgagctccg ggccggtgac cgttttaccg tttacgcttt ccagaacaaa gcggtggtgc
     2161 tccagttgct cgcgtttgac ggacactttt ccactgctca cacaccctgt cattatgatg
     2221 ctcagggcga ccagcgtgac gattttcttc attgatattc tctgtaatct gatagttaac
     2281 actgactata gtaatgatat gaccggatag atcttcaggg gttatccgaa aatgctcctc
     2341 tgagcgcagg ggagcgacag gattagaaca gcgcgttcgg gcaggcttcg cccttctcaa
     2401 gctggcttaa gttttgtaac gtggtttcag agatgctgat cagcgcttct gcggtcagga
     2461 atgcctgatg ccccgtaaac agtacgttat ggcaggccga cagacggcgg aaaacatcat
     2521 cctgaataac atcgtttgac ttgtcctcaa agaacaggtc gcgttcgttt tcatacacat
     2581 ccatccccag cgagccgatt ttctgattct tcagagcttc gatagccgcc tgggaatcaa
     2641 tcagcgcgcc acgactggta ttaatgatca taacgccatt tttcatttga tcgaatgccg
     2701 catggttcag taaatggtag ttttccggcg tgagcgggca gtgcagggaa atgacatccg
     2761 attcggcaaa caacgtttgc agatccacat actcgacgcc gaggtcaagc gcggcagtgc
     2821 tgggataggg atcaaacgcc agtaaacgca ttccaaagcc tttcaggata cgcagcgcgg
     2881 cgacgccgat tttaccggta ccaatgacgc cagcggtttt tccgtgcatg gtaaagccgg
     2941 tcagtccctc aagggaaaag ttagcgtcgc gggtgcgttg ataagcgcgg tgaatacggc
     3001 ggttcaatgt catcatcatg ccaatcgcat gttcagcgac ggcttccgga gaataagccg
     3061 gtacgcgcac cacctgcaag ccgagttctt tagcggcatc caggtcgaca ttattaaatc
     3121 cggcgcaacg cagcgcgatg tatttcacgc cgtgtttttt cagctcttcc agtaccggtc
     3181 ggctcccgtc gtcattcacg aagatacaaa ctgcttcaca tccattggcg gttttcgccg
     3241 ttttctcggt tagcagaaaa tcaaaaaact ccagttcaaa accgaacgct tcgttcactt
     3301 gctgtagata tttcttgtca tactgtttgg tactatagac ggcgagtttc atatgacctt
//
LOCUS       DAJVSD010000333         3352 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.333, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000333 DAJVSD010000000
VERSION     DAJVSD010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3352
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.333"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(88..849)
                     /gene="kduD"
                     /locus_tag="OQP62_004250"
     CDS             complement(88..849)
                     /gene="kduD"
                     /locus_tag="OQP62_004250"
                     /EC_number="1.1.1.127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase
                     KduD"
                     /protein_id="HCS1723633.1"
                     /translation="MILNAFSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE
                     PTETIARVTALGRRFLSLTADLRQIDGIPALLERAVAEYGHIDILVNNAGLIRREDAI
                     DFTEKDWDDVMNLNIKSVFFMSQAAAKYFIAQGNGGKIINIASMLSFQGGIRVPSYTA
                     SKSGVMGITRLMANEWAKHNINVNAIAPGYMSTNNTQQLRADAQRSAEILDRIPAGRW
                     GLPGDLMGPVVFLASSAADYINGYTIAVDGGWLAR"
     gene            complement(904..1740)
                     /gene="kduI"
                     /locus_tag="OQP62_004251"
     CDS             complement(904..1740)
                     /gene="kduI"
                     /locus_tag="OQP62_004251"
                     /EC_number="5.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-4-deoxy-D-glucuronate isomerase"
                     /protein_id="HCS1723634.1"
                     /translation="MDVRQSIHSEHAKTLDTQALRREFLIENIFVADEYTMVYSHIDR
                     IIVGGIMPVSHPVEIGGEVGKQLGVSRLLDRRELGVINIGGAGAIIVDGQRHDIGHRD
                     ALYIGKGAKELVFVSNEASRPAKFYYNCAPAHTAYPTKKVSPADVAPVTLGDNLTSNR
                     RTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYLYFNMEEDSCVFH
                     MMGQPQETRHIVMRNEQAVISPSWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVQD
                     LR"
     gene            complement(2170..3348)
                     /locus_tag="OQP62_004252"
     CDS             complement(2170..3348)
                     /locus_tag="OQP62_004252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HCS1723635.1"
                     /translation="MKEVVIVGALRTPIGCFQGTLARHSAVELGSMVVKALIERTGVD
                     ANAIDEVILGQVLTAGAGQNPARQSAIKGGLPTTVSAITINDVCGSGLKALHLATQAI
                     QCGEADIVIAGGQENMSRAPHVLNDSRTGALPDADNLVDSLVHDGLWDAFNDYHIGVT
                     AENLAREYGISRELQDAYALSSQQKARAAIDTGRFKDEIVPIVTQRNGQTAIVDTDEQ
                     PRADASAEGLALLHPAFDSLGSVTAGNASSINDGAAAVMMMSETKAQALGLPVLARIR
                     AFASVGVDPALMGIAPVYATRRCLERAGWQLTEVDLIEANEAFAAQALSVGKMLEWDE
                     RRVNVNGGAIALGHPIGASGCRILVSLVHEMVKRDARKGLATLCIGGGQGVALTIERD
                     "
BASE COUNT          798 a          958 c          803 g          793 t
ORIGIN      
        1 taaaaaaacc ctgtacgagg acagggcttt atcagttttt tcggccaaag agtcgatttt
       61 cccagaaacg catttgtcag tagcggatta acgcgccagc caaccgccat ctaccgctat
      121 ggtatagccg ttaatataat cagcggcgct ggatgccagg aagactaccg gccccattaa
      181 atcgcccggt agcccccaac gtccagccgg aatacggtcg agaatttcgg cgctacgttg
      241 tgcatcagcg cgcaattgct gggtattatt cgtggacata tagcccggcg cgatggcgtt
      301 tacattgata ttgtgtttcg cccactcgtt cgccatcaga cgcgttattc ccattacgcc
      361 gcttttcgac gcggtataag acggaacacg aatgccgccc tggaaggaaa gcatagacgc
      421 gatattaata attttgccgc cgttgccctg ggcaataaaa tattttgccg ccgcctgaga
      481 cataaagaac acgctcttga tgttcaggtt catgacgtca tcccagtctt tttccgtgaa
      541 atcaatcgca tcttcacgac ggatcaaacc cgcgttattc accagaatat caatatgacc
      601 gtattccgcc accgcccgtt ccagtagcgc cggaatacca tcgatttgac gcagatcggc
      661 tgtcaggctt aaaaaacgtc gtcccagagc ggtgacgcgc gcaatagttt ccgtcggttc
      721 aacaatgtta ataccgacaa tgtcacagcc cgcttccgcc agccctaacg ccatcccctg
      781 tcccaatccg gtatcgcacc ccgtcacaac cgcgacttta ccttcaagag aaaatgcatt
      841 caaaatcatt gttaatcctt atttttgtca tgcctgtcac acaggcgtta tcaccggtcg
      901 cgactagcgc agatcttgta ccgcaacgtg atccatgtca tcgaagacct gattttctcc
      961 caccatgccc caaataaacg tataggcttt ggtgccaacg ccggaatgta ttgaccagct
     1021 tggggaaata accgcctgtt cattacgcat cacaatatga cgggtttcct gaggctgccc
     1081 catcatatgg aaaacgcaac tgtcctcttc catattgaaa tagaggtaaa cttccatacg
     1141 gcgctcatgg gtatggcatg gcatggtgtt ccatagattg ccgggcgcca gttcggtgag
     1201 tcccatactg agctgacagg tttccagtac atccggtacg aagtatttat tgatggtgcg
     1261 acggttactg gtgaggttat cgcctaaggt gacgggcgca acgtcggcag gcgacacttt
     1321 tttcgtcgga taagcggtgt gcgctggcgc gcagttgtaa taaaacttcg ccggtctgct
     1381 cgcctcattg ctgacgaaga ccagctcttt cgccccttta ccaatataca gagcatcacg
     1441 atgaccaatg tcatggcgct gcccgtcaac gataatggcg cccgcgccgc caatattaat
     1501 gacgcccagc tcgcggcggt ccagtaatcg ggaaacgcca agctgtttac ctacttctcc
     1561 gccgatttca acgggatggc tgacgggcat aatgccgccg acaataatac ggtcgatatg
     1621 gctgtagacc atcgtatatt catcagcgac aaaaatattt tctattaaaa actcgcgtcg
     1681 cagcgcctgg gtgtccagcg ttttagcgtg ctcgctatgg atactttgcc ttacgtccac
     1741 ttttccctcc aatgataaat cgatcgcaac ggcataaaat caaaacactg ttttgattta
     1801 tttaacggca tcatagtcgc ctggataaag gttttcaaca ataaataaaa caacgtttca
     1861 tttttatgtc tggttatttt taaaactgct gtagcgatca cgatcggcgc taaaacttac
     1921 gcatttgtct gattttcaga catgcgcgcc agatgctgta tgcggttacc cagataaaaa
     1981 ttggagcttg ttttagaacg aggtctgatg tgcgaattga attaaaagcg gtacgcgtct
     2041 gcaatgcccg ccgcggcaag aagttctgcg ctataacgaa aaaggggggt ctgtcactgg
     2101 ctttgccctc gtgatagagg gctttttatg acggaatact gaagcaggaa aagggtggct
     2161 ggcgtaggat cagtcgcgtt caatggttaa agcaacgccc tggccgccac cgatacacag
     2221 cgtcgccaga ccttttcgcg cgtcgcgttt aaccatttcg tgcaccagtg aaaccagaat
     2281 tcgacaaccg gaagcgccaa tgggatgccc cagcgcaatc gcgccgccat taacgtttac
     2341 ccgtcgctca tcccattcca gcatttttcc taccgacaac gcctgggcgg caaacgcttc
     2401 gttggcttcg ataaggtcga cctccgtcag ttgccagccg gcacgctcca gacagcgccg
     2461 ggtagcatat accggcgcaa tccccattag cgcaggatcg acgccgacgc tggcaaacgc
     2521 gcggatgcgc gccagcaccg gcagccccag cgcctgggct ttcgtctcgc tcatcatcat
     2581 caccgcggcg gcgccatcgt tgattgaaga ggcattaccc gccgtcaccg aacctaaact
     2641 atcaaacgcc ggatgcagca gggctaaccc ctccgcactg gcgtcggccc gcggttgttc
     2701 atccgtatcg acaattgcgg tctgcccatt acgttgcgtg acgatgggga caatctcatc
     2761 tttaaaacgt ccggtatcaa tcgcggccct ggctttttgt tgcgaactga gcgcataagc
     2821 atcctgtaac tcgcggctga tgccatattc ccgcgccagg ttttctgccg tcacgccaat
     2881 gtgataatcg ttgaaggcat cccataagcc atcatgtacc agactatcca ccagattgtc
     2941 ggcatcaggc aacgcgccgg tacggctgtc attgaggaca tgcggcgcac ggctcatatt
     3001 ctcctgcccg cccgcaataa caatgtccgc ttcgccgcac tgaatagcct gcgtcgccag
     3061 gtgcaacgct tttaaaccgg aaccacaaac gtcattaatg gtaatagcgg aaacggtagt
     3121 cggcagccct cctttgatgg ctgactggcg cgccggattc tgcccggcgc cagccgtcag
     3181 tacctgaccg aggatgacct catcgatagc attagcgtcc acgccggtgc gctcaattaa
     3241 cgcttttacg accatactcc ccagctcgac ggcggaatga cgggccagcg ttccctgaaa
     3301 acagccgatg ggtgtccgta aagcccccac tatcacaacc tctttcatta cc
//
LOCUS       DAJVSD010000334         3313 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.334, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000334 DAJVSD010000000
VERSION     DAJVSD010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3313
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.334"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            102..3107
                     /locus_tag="OQP62_004253"
     rRNA            102..3107
                     /locus_tag="OQP62_004253"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            3210..>3313
                     /gene="rrf"
                     /locus_tag="OQP62_004254"
     rRNA            3210..>3313
                     /gene="rrf"
                     /locus_tag="OQP62_004254"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT          875 a          738 c         1028 g          672 t
ORIGIN      
        1 tcaagctgaa aattgaaaca cagaacaacg aaagttgttc gtgagtctct caaattttcg
       61 caacacgatg atgaatcgaa agaaacatct tcgggttgtg aggttaagcg actaagcgta
      121 cacggtggat gccctggcag tcagaggcga tgaagggcgt gctaatctgc gataagcgcc
      181 ggtaaggtga tatgaaccgt tataaccggc gatacccgaa tggggaaacc cagtgtgatt
      241 cgtcacacta tcattaactg aatccatagg ttaatgaggc gaaccggggg aactgaaaca
      301 tctaagtacc ccgaggaaaa gaaatcaacc gagattcccc cagtagcggc gagcgaacgg
      361 ggaggagccc agagcctgaa tcagcatgtg tgttagtgga agcgtctgga aaggcgcgcg
      421 atacagggtg acagccccgt acacaaaagc gcatatgctg tgagctcgat gagtagggcg
      481 ggacacgtgg tatcctgtct gaatatgggg ggaccatcct ccaaggctaa atactcctga
      541 ctgaccgata gtgaaccagt accgtgaggg aaaggcgaaa agaaccccgg cgaggggagt
      601 gaaaaagaac ctgaaaccgt gtacgtacaa gcagtgggag ccccaccact aagccagtgg
      661 tgaactccac atacgcatcc tttgctgagg agacggttaa cggagcgaaa gcgacgttca
      721 acctcaaaag aagcagaggg ggcttagtgg tggggtgact gcgtaccttt tgtataatgg
      781 gtcagcgact tatattctgt agcaaggtta actgtatagg ggagccggag ggaaaccgag
      841 tcttaaccgg gcgttaagtt gcagggtata gacccgaaac ccggtgatct agccatgggc
      901 aggttgaagg ttgggtaaca ctaactggag gaccgaaccg actaatgttg aaaaattagc
      961 ggatgacctg tggctggggg tgaaaggcca atcaaaccgg gagatagctg gttctccccg
     1021 aaagctattt aggtagcgcc tcgtgaattc atctccgggg gtagagcact gtttcggcta
     1081 gggggccatc ccggcttacc aacccgatgc aaactgcgaa taccggagaa tgttatcacg
     1141 ggagacacac ggcgggtgct aatgtccgtc gtgaagaggg aaacaaccca gaccgccagc
     1201 taaggtccca aagtcatggt taagtgggaa acgatgtggg aaggcccaga cagccaggat
     1261 gttggcttag aagcagccat catttaaaga aagcgtaata gctcactggt cgagtcggcc
     1321 tgcgcggaag atgtaacggg gctaaaccat gcaccgaagc tgcggcagcg acaccgtgtg
     1381 ttgttgggta ggggagcgtt ctgtaagcct gtgaaggtgt gctgtgaggc atgctggagg
     1441 tatcagaagt gcgaatgctg acataagtaa cgataaagcg ggtgaaaagc ccgctcgccg
     1501 gaagaccaag ggttcctgtc caacgttaat cggggcaggg tgagtcgacc cctaaggcga
     1561 ggccgaaagg cgtagtcgat gggaaacggg ttaatattcc cgtacttggt gttactgcga
     1621 aggggggacg gagaaggcta tgttggccgg gcgacggttg tcccggttta agcgtgtagg
     1681 tatgtgttcc aggtaaatcc ggttcacttt aacactgagg cgtgacgacg aggcactacg
     1741 gtgctgaagc aacaaatgcc ctgcttccag gaaaagcctc taagcatcag gtaacatcaa
     1801 atcgtacccc aaaccgacac aggtggtcag gtagagaata ccaaggcgct tgagagaact
     1861 cgggtgaagg aactaggcaa aatggtgccg taacttcggg agaaggcacg ctgacacgta
     1921 ggtgaagtga tttactcacg gagctgaagt cagccgaaga taccagctgg ctgcaactgt
     1981 ttattaaaaa cacagcactg tgcaaacacg aaagtggacg tatacggtgt gacgcctgcc
     2041 cggtgccgga aggttaattg atggggtcag cgcaagcgaa gctcctgatc gaagccccgg
     2101 taaacggcgg ccgtaactat aacggtccta aggtagcgaa attccttgtc gggtaagttc
     2161 cgacctgcac gaatggcgta atgatggcca ggctgtctcc acccgagact cagtgaaatt
     2221 gaactcgctg tgaagatgca gtgtacccgc ggcaagacgg aaagaccccg tgaaccttta
     2281 ctatagcttg acactgaaca ttgagccttg atgtgtagga taggtgggag gctttgaagt
     2341 gtggacgcca gtctgcatgg agccgacctt gaaataccac cctttaatgt ttgatgttct
     2401 aacgtggacc cgtgatccgg gttgcggaca gtgtctggtg ggtagtttga ctggggcggt
     2461 ctcctcctaa agagtaacgg aggagcacga aggttggcta atcctggtcg gacatcagga
     2521 ggttagtgca atggcataag ccagcttgac tgcgagcgtg acggcgcgag caggtgcgaa
     2581 agcaggtcat agtgatccgg tggttctgaa tggaagggcc atcgctcaac ggataaaagg
     2641 tactccgggg ataacaggct gataccgccc aagagttcat atcgacggcg gtgtttggca
     2701 cctcgatgtc ggctcatcac atcctggggc tgaagtaggt cccaagggta tggctgttcg
     2761 ccatttaaag tggtacgcga gctgggttta gaacgtcgtg agacagttcg gtccctatct
     2821 gccgtgggcg ctggagaact gaggggggct gctcctagta cgagaggacc ggagtggacg
     2881 catcactggt gttcgggttg tcatgccaat ggcactgccc ggtagctaaa tgcggaagag
     2941 ataagtgctg aaagcatcta agcacgaaac ttgccccgag atgagttctc cctgagactt
     3001 taggtctcct gaaggaacgt tgaagacgac gacgttgata ggccgggtgt gtaagcgcag
     3061 cgatgcgttg agctaaccgg tactaatgaa ccgtgaggct taaccttaca acgccgaaga
     3121 tgttttggcg gatgagagac gattttcagc actgattccg gattttcggg aacgaaagat
     3181 aaaagattcg tttccggcaa cagaatttgc ctggcggcac tagcgcggtg gtcccacctg
     3241 accccatgcc gaactcagaa gtgaaacgcc gtagcgccga tggtagtgtg gggtctcccc
     3301 atgcgagagt agg
//
LOCUS       DAJVSD010000335         3286 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.335, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000335 DAJVSD010000000
VERSION     DAJVSD010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3286)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3286)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3286
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.335"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(26..484)
                     /locus_tag="OQP62_004255"
     CDS             complement(26..484)
                     /locus_tag="OQP62_004255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF986 domain-containing protein"
                     /protein_id="HCS1723636.1"
                     /translation="MTITDLVLILFIAALLAYALYDQFIMPRRNGPTLLSIALLRRGR
                     IDSVIFVGLVAILIYNNVTSHGAQMTTWLLSALALMGFYIFWIRTPRIIFKQRGFFFA
                     NVWIEYNRIKEMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLIENQ"
     gene            complement(543..1394)
                     /locus_tag="OQP62_004256"
     CDS             complement(543..1394)
                     /locus_tag="OQP62_004256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000228151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HCS1723637.1"
                     /translation="MVDMTKTTTEKKLTPSDIRGVFLRSNLFQGSWNFERMQALGFCF
                     SMVPAIRRLYPENNDARKQAIKRHLEFFNTHPYVAAPVLGVTLAMEEKRANGAEIDDG
                     AINGIKVGLMGPLAGVGDPIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLVRLA
                     TRYYGVAYGYRKGVDIVKDMGGGFLQKLTEGASILGLFVMGALVNKWTHVNIPLVVST
                     ITGQDGQTRVTTVQTILDQLMPGLVPLLLTFACMWLLRKKVNPLWIIVGFFVIGIAGY
                     SVGLLGQ"
     gene            complement(1407..2207)
                     /gene="manY"
                     /locus_tag="OQP62_004257"
     CDS             complement(1407..2207)
                     /gene="manY"
                     /locus_tag="OQP62_004257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIC"
                     /protein_id="HCS1723638.1"
                     /translation="MEITTLQIVLVFIVACIAGMESVLDEFQFHRPLIACTLIGAVLG
                     DMKTGIIIGGTLEMIALGWMNIGAAVAPDAALASIISTVLVIAGHQSIGAGIALAIPL
                     AAAGQVLTIIVRTITVAFQHAADKAAENGNLTALSWLHVSSLFLQAMRIAIPAVIVAI
                     SVGTSEVQGMLNAIPEVVTGGLNIAGGMIVVVGYAMVINMMRAGYLMPFFYLGFVTAA
                     FTNFNLVALGVIGAVMAILYIQLSPKYNRVAGAPAAAAGNNDLDNELD"
     gene            complement(2260..3228)
                     /gene="manX"
                     /locus_tag="OQP62_004258"
     CDS             complement(2260..3228)
                     /gene="manX"
                     /locus_tag="OQP62_004258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HCS1723639.1"
                     /translation="MTIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAET
                     LIEKYNAQLAKLDTSKGVLFLVDTWGGSPFNAASRIVVDKERYEVIAGVNIPMLVETF
                     MARDDDPSFDELVALAVETGREGVKALKAKPVEKAAPAPVAAAPKAATPAKPMGPNDY
                     MVIGLARIDDRLIHGQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTAH
                     VVDVAKMIRVYNNPKYAGERVMLLFTNPTDVERIVEGGVKVTSVNIGGMAYRQGKTQV
                     NNAVSVDEKDIEAFKKLNERGIELEVRKVSTDPKLKMMDLIAKVAK"
BASE COUNT          808 a          896 c          828 g          754 t
ORIGIN      
        1 aacatagttg aggctatatc ttaagctatt gattttcaat aagaagttta tatatttttt
       61 ccagatcgtc gatattgcgt acacggataa gcaagcgtcg ttgttctaat tgcatcacca
      121 gtacgccgtc ctccgataaa ttcatctctt taatacggtt atattctatc cagacattgg
      181 caaagaaaaa gccacgttgt ttaaagatga tccgtggcgt gcggatccag aatatataaa
      241 accccattaa cgccagcgcg cttaataacc atgtggtcat ctgcgctccg tggctggtta
      301 cgttgttata aataaggatg gcgaccagcc caacgaagat aacgctgtct atgcgaccgc
      361 ggcggagcag ggctatagaa agcagagtgg ggccattgcg acggggcatg atgaactgat
      421 cgtagagagc gtaagccaat aatgcggcaa taaagagaat cagcaccagg tccgtgatag
      481 tcatttatcc tccagagaaa taaaaaaacg gggccgtttg gccccggtag tgtacaacag
      541 ccttactggc ccagcagtcc tacggagtag ccggcgatac caatgacgaa gaagcccacg
      601 ataatccaca gcgggttaac tttcttacgc agcagccaca tacaggcaaa ggtcaacagt
      661 agcggaacca gacccggcat cagctggtcg agaatggttt gcacggtggt aacgcgtgtc
      721 tgaccatcct gaccggtgat ggtggagacc accagcggga tattcacatg cgtccacttg
      781 ttaaccaatg cccccatgac aaacaggccg aggattgacg ccccctcagt cagtttttgc
      841 aggaagccgc cgcccatatc tttaacgata tcgacgcctt tgcggtagcc ataagccacg
      901 ccataataac gggtcgccag acgcaccagg ttaaacagga tgaaaaacag cagcggacca
      961 agcaggctgc cgctcattgc aatacctgcg cccagcgccg cgaatactgg acggacggta
     1021 ccccagaaga tagggtcgcc gacgcctgcc agcggtccca tcagaccgac tttgataccg
     1081 ttgatagcac catcgtcaat ctctgcgccg ttcgcacgct tttcttccat tgccagcgtt
     1141 acgcccagta ccggcgccgc aacgtaagga tgagtgttaa agaactccag gtgacgctta
     1201 atcgcctgtt tacgcgcgtc attattctcc ggatacaggc gacgaatcgc cggcaccata
     1261 gagaagcaga agcccagcgc ttgcatacgt tcgaagttcc atgacccctg gaacaggtta
     1321 gaacgaagaa atacgccgcg aatatcgctc ggagtgagtt ttttctcggt ggtagtttta
     1381 gtcatatcaa ccatttcgct cacctgttag tccagttcgt tatcgagatc gttattgcca
     1441 gcagccgctg caggcgcgcc cgctacacgg ttgtatttcg ggctcagctg gatgtaaaga
     1501 atagccatca ctgcgccgat gacacccagt gcgaccaggt tgaagtttgt gaaagccgcg
     1561 gtgacgaaac cgaggtagaa gaacggcatc aggtagcctg cgcgcatcat gttgataacc
     1621 atcgcataac caaccacgac gatcatgccg ccggcgatgt tcagaccgcc tgtgacgact
     1681 tcaggaatcg cattcagcat tccctgtact tcgctggtgc ctacggagat ggcaacgata
     1741 accgccggga tggcgatacg cattgcctgc aggaacagag aagaaacgtg cagccaggag
     1801 agcgccgtca ggttgccgtt ttcagccgcc ttgtccgccg cgtgctggaa tgccacggtg
     1861 atggtacgaa cgataatggt cagtacctgg cctgccgccg ccagcggaat cgccagcgcg
     1921 ataccggcgc caatgctttg atgcccagcg atgaccagaa cggtagagat gatggacgcc
     1981 agtgcggcat caggcgcaac ggcagcaccg atgttcatcc agcccagagc gatcatttcc
     2041 agagtaccgc cgatgataat accggttttc atgtccccca gaacggcgcc gattaaggta
     2101 caggcgatca gcggacggtg gaactgaaat tcatcaagta ccgactccat acccgcgata
     2161 catgcgacga tgaacaccag cacaatctga agagtggtaa tctccattgt acttctccta
     2221 ttgctatctt aagtgtgaaa gctaattaaa tgccggcggt tatttcgcca ctttggcaat
     2281 taaatccatc attttcagtt tcggatcggt ggaaacttta cgcacctcaa gctcgatgcc
     2341 gcgctcgttg agctttttaa aggcttcgat atccttttca tcgacggaaa cggcgttgtt
     2401 cacctgcgtt ttaccttgac gataggccat accgccaatg ttcacggagg tgactttcac
     2461 gccgccctca acgatgcgct cgacgtcggt aggattggta aacagaagca tcacgcgttc
     2521 gccggcgtat ttcgggttat tgtagacgcg aatcatcttc gcgacgtcaa ccacatgcgc
     2581 cgtaacgccc ggcggcgcaa cttgcgtcag cagcgtttta cgtacggtat ccgccgcgac
     2641 ttcatcgctc acaacaataa tacggctgac attggtctct ttggtccagc gggtagcgac
     2701 ctgaccgtga atgaggcggt catcaatacg ggcaagcccg ataaccatat aatcattcgg
     2761 gcccatcggt tttgccggcg tggccgcttt tggcgcggcg gcgaccggcg ctggcgcggc
     2821 tttttctacc ggtttcgctt tcagcgcttt tacgccttca cgaccggttt ctaccgccag
     2881 tgcgaccagc tcgtcaaagc tcggatcgtc gtcacgagcc ataaacgttt cgaccagcat
     2941 cgggatgttg acgccggcaa taacttcata gcgctcttta tcgacgacaa tgcggctggc
     3001 agcattaaac ggactgcctc cccatgtatc aacgagaaat agcacgcctt tactggtatc
     3061 gagtttagcc aactgagcgt tgtacttttc gatcagcgtt tcggcatttt cgcctggaac
     3121 gaaatcgatc cagccgacgt tttcctgctc gcctaacagc atttcggctg ttttaagtaa
     3181 ctgctctgca gcccaaccat gtgtgcctat aacaatagca atggtcactt gctacctcct
     3241 ttattattgt caacacatca acttgacaga tgtatttttt gaatcg
//
LOCUS       DAJVSD010000336         3284 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.336, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000336 DAJVSD010000000
VERSION     DAJVSD010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3284
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.336"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(78..933)
                     /locus_tag="OQP62_004259"
                     /pseudo
     CDS             complement(78..933)
                     /locus_tag="OQP62_004259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460296.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
     gene            complement(930..1244)
                     /locus_tag="OQP62_004260"
     CDS             complement(930..1244)
                     /locus_tag="OQP62_004260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723640.1"
                     /translation="MLKNGVKKHAPDIIEYPFFIRYLSARNYWLHDYAYNTMFFGINM
                     NIMLYSFELIFFDGFDVYLLLIFTVIVLSLMMSASNGWQGNITKLLPSELLGQLLLRK
                     KK"
     gene            1387..2346
                     /locus_tag="OQP62_004261"
     CDS             1387..2346
                     /locus_tag="OQP62_004261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A deacylase LpxR family protein"
                     /protein_id="HCS1723641.1"
                     /translation="MNKYSYCATMIAAILSTTTMANASSLAISVANDDAGIFQPSLNA
                     LYGHKAADRGDYTAGLFLGYSHDLTDASQLSFHIAQDIYSPSGANKRKPEAVKGDRAF
                     SAFLHTGLEWNSLATNWLRYRLGTDIGVIGPDAGGQEVQNRAHRIIGAEKYPAWQDQI
                     ENRYGYTAKGMVSLTPAIDILGVNVGFYPEVSAVGGNLFQYLGYGATVALGNDKTFNS
                     DNGFGLLSRRGLIHTQKEGLIYKVFAGVERREVDKNYTLQGKTLQTKMETVDINKTVD
                     EYRVGATIGYSPVAFSLSLNKVTSEFRTGDDYSYINGDITFFF"
     gene            complement(2395..3153)
                     /locus_tag="OQP62_004262"
     CDS             complement(2395..3153)
                     /locus_tag="OQP62_004262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiY family protein"
                     /protein_id="HCS1723642.1"
                     /translation="MKLLKAVPAVVMLAGGVFASLYAAADDSVFTVMDDPSTAKKPFE
                     GNLNAGYLAQSGNTKSSSLTADTAMTWYGQRTAWSLWGNASNTSSNDERSSEKYAVGV
                     RNRFNMTDYDYTFGQASWLTDRFNGYRQRDVLTAGYGRQFLNGPVHSFRFEFGPGVRY
                     DEHTDDTTETQPLGYASGSYAWQLTDNAKFTQGVSVFGAEDTTLNSETALNVAINEHF
                     GLKVGYNLTWNSQPPESAPEHTDRRTTVTLGYKM"
BASE COUNT          877 a          792 c          754 g          861 t
ORIGIN      
        1 gattgcatca ctctgtagca aatcaagccc cttgacaggg tttctccatt atctttctac
       61 gcgccgtata gcgcttctca tcggcaacct aacctctgcg ccagactccc ctttgttgtt
      121 ttcacctcgc tggctaccgc ttcaggcaag ttagaccaca gcgtcagcac tggcttcgtt
      181 ttatgttcga tagcctccac ggtaacctga tagtcgcaaa aattcgccga acggggtgta
      241 ttctgatcca taataaacgc agcgtaattt ccttcacttt ttgacggcgc cgttccggtg
      301 aataaaacct tctagtaccc gctgggaatt tctaccgtcg catcttctgg caatgtggcg
      361 atatgccgct caaaaagggg ggccggtcac tacgtgcact acagatacat cagcctgttt
      421 ggcaagttcg cgcacccggt tttccagtgc agcccatgct ccctggttca gggcggattt
      481 ctgcggcgta atattcgata aataatttaa cgacggccag tccgaaacgc cgcccaatcc
      541 tgccaacggc gcctggtgtc ccctgtcgac ttttaatagc gtatgggcat ttttataggc
      601 cgaaggggcc aacgtatccg agggcggtaa atcggggtcc tgcgcccagt tccgcgggcg
      661 accgcttgcc tggctggtct ttgtcacgct ataggcaacc cagttggcaa atttcgtggc
      721 gctattatta ttgagcgtat agacatggcg atagattgtt tgttgacttc ctccttgagg
      781 acagccaacg ctacagttat caggttgctg aacgagtacg ttacgatggg gtaactcggg
      841 tgccgatgtt gtatcctggg gaggatacga tgtagtacat gcgcttaata atactacggg
      901 cagtaatttt agcagattaa tggttttatt cattttttct tccttaataa taactgccct
      961 aataattcag atggcaataa tttggttata ttaccctgcc agccgttaga tgcgctcatc
     1021 attaaagaca acactatcac ggtaaaaatt aataacagat aaacatcgaa gccatcaaag
     1081 aaaatgagct caaaagaata caacatgata ttcatgttga taccaaaaaa catcgtatta
     1141 tatgcataat cgtgaagcca ataatttctc gcactcagat agcgaatgaa aaatggatat
     1201 tcaataatat ctggcgcatg ttttttaaca ccatttttca acattaaggc aacgtatcct
     1261 ctcaatgact cgctgctggc aggagtttag ttatatttaa aggtttaata agcactgcgc
     1321 atcatgctgc tgtgcttatt actttgtaaa aataagagta ttcactttca tattcagggg
     1381 taaaaagtga acaaatacag ctattgcgca acgatgattg ccgccatact cagtacgacc
     1441 acaatggcca atgccagtag ccttgctatt tcagtggcga atgatgatgc aggtatattt
     1501 caaccatcct taaatgccct ttacgggcac aaggctgcag accggggtga ttatactgcc
     1561 gggctctttt taggctacag ccacgatctc actgacgcca gtcaactctc ttttcatatc
     1621 gcgcaagata tttattctcc atctggcgcc aataaaagaa agcctgaagc cgtcaaaggc
     1681 gaccgcgcgt tcagcgcctt tcttcatacc ggactggagt ggaattcatt agccaccaat
     1741 tggttacgtt atcgtttagg taccgatatc ggcgttattg gtcctgacgc aggcggtcag
     1801 gaggttcaga atcgggcgca tcgaataata ggcgcagaaa aataccctgc ctggcaggat
     1861 caaattgaaa accgttatgg ttacacggca aaaggaatgg tctcccttac gccagctatt
     1921 gatattctgg gtgtcaatgt gggcttctat ccagaagtct ctgctgtcgg cggcaatctc
     1981 ttccagtatt tggggtacgg cgcaaccgtt gcgctgggaa atgataagac cttcaactct
     2041 gataatgggt ttgggttatt gtcccgccga gggttaatac acactcaaaa agagggattg
     2101 atctataaag tatttgctgg cgttgagcgc agggaagttg ataaaaacta cacgttacag
     2161 gggaaaacgc tgcaaacaaa aatggaaacg gtggatatta ataaaaccgt ggatgaatat
     2221 cgcgtcggtg ccaccatcgg ctattctccc gtcgcatttt ctctttcttt aaacaaagtc
     2281 acgtcggaat ttcgcaccgg agacgactat tcttatatca acggcgacat caccttcttc
     2341 ttctgaggcg tcaccacgga ataaccgggt tacgtaacgt aacccggcgc aatattacat
     2401 cttatagccc agcgttaccg tagtgcggcg atcggtatgt tcaggcgctg attcaggcgg
     2461 ctgcgagttc cacgttaaat tataccccac ctttagacca aaatgttcgt taatggcgac
     2521 attgagggct gtttccgaat ttagtgtggt gtcttctgcg ccaaatactg acaccccctg
     2581 tgtaaactta gcattgtcag ttaactgcca ggcatagctg ccggaagcat aacccaacgg
     2641 ctgcgtttca gtggtatcgt ccgtatgttc gtcatagcga acccctggac cgaattcaaa
     2701 acggaagctg tgcactggac cattaaggaa ctgccgcccg taaccggcgg tcagtacgtc
     2761 gcgctgacga taaccgttga aacggtctgt cagccaactg gcctggccaa aggtataatc
     2821 ataatccgtc atattaaaac ggttacgcac gcctaccgca tatttttctg aagagcgttc
     2881 atcattagag gaggtattgc tggcattgcc ccataatgac caggcggtac gttgtccata
     2941 ccaggtcatc gccgtgtcag ccgttaagga agaactttta gtattgcctg actgagcaag
     3001 gtagcccgca ttcagattac cttcaaaagg ttttttcgcg gtggagggat catccatgac
     3061 agtaaaaacg gaatcatcgg cggcggcata cagagacgcg aacacgccac ccgccagcat
     3121 aactacagcg ggtactgcct tcaaaagctt catttatata gagtccgtac aactaaaaaa
     3181 gagaccacga cggtcccgga aactttcata gggatcaatg acaaacgccc ctggaaaggt
     3241 agcgaattat aagaagcccc gaataacata gcaatcaatt acta
//
LOCUS       DAJVSD010000337         3255 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.337, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000337 DAJVSD010000000
VERSION     DAJVSD010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3255)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3255)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3255
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.337"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..934
                     /locus_tag="OQP62_004263"
     CDS             <1..934
                     /locus_tag="OQP62_004263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1723643.1"
                     /translation="AAVNLRHIEIFHAVMTAGNLTEAARLLHTSQPTVSRELARFEKV
                     LGLTLFERTRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIACLPV
                     FSQSFLPPLLPPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHAPAGTTRT
                     ELLTLNEVCVLPCDHPLAAKTVLTPDDFQGENFISLSRLDSYRQLLDTLFAEHQVKRR
                     MVVETHSAASVCAMVRAGAGVSIVNPLTALDYAASGVTVRRFSIDVPFTVSLIRPLHR
                     PASALVDAFSKHLQTHLSRLVEPLEVILGPMTKA"
     gene            complement(906..1613)
                     /locus_tag="OQP62_004264"
     CDS             complement(906..1613)
                     /locus_tag="OQP62_004264"
                     /EC_number="5.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase"
                     /protein_id="HCS1723644.1"
                     /translation="MKTIGLLGGMSWESTIPYYRLINEGIKQQLGGLHSASLLLHSVD
                     FHDIEVCQRRGEWDKAGDILAQAAQGLQQAGAEGIVLCTNTMHKIAHIIESRCSLPFL
                     HIADATGRAIARQGLHRVALLGTRYTMEQDFYRGRLEQQFAIETIVPEADDRARINQV
                     IFDELCQGIFTDASRHYYLQVIEQLAAQGAQGVIFGCTEIGLLVPQTQSALPVFDTTA
                     IHAADAVSFMLSSSAPE"
     gene            complement(1726..3141)
                     /gene="araE"
                     /locus_tag="OQP62_004265"
     CDS             complement(1726..3141)
                     /gene="araE"
                     /locus_tag="OQP62_004265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-proton symporter AraE"
                     /protein_id="HCS1723645.1"
                     /translation="MVSINDSALTPRSLRDTRRMNMFVSVSAAVAGLLFGLDIGVIAG
                     ALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLGS
                     LGSAFASSVEVLIGARVILGVAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGI
                     VLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAQKGRHIEAEEVLR
                     MLRDTSEKARDELNEIRESLKLKQGGWALFKANRNVRRAVFLGMLLQAMQQFTGMNII
                     MYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMA
                     LGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCR
                     DFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFIGITFWLIPETKN
                     VTLEHIERKLMAGEKLRNIGV"
BASE COUNT          781 a          946 c          816 g          712 t
ORIGIN      
        1 ggctgccgtt aatttacgtc acattgaaat ttttcatgcc gtaatgaccg ccggaaatct
       61 caccgaagcg gcgcggctgc tgcatacctc gcagcctacc gtcagtcgcg agctggcgcg
      121 ttttgagaaa gtgctgggat taacgctgtt tgagcgcaca cgcgggcgct tacatccgac
      181 ggtgcaaggg ctacgcctgt tcgaagaggt acaacgctcc tggtatgggt tggatcgcat
      241 cgtcagcgcg gcggaaagtc tgcgcgagtt ccgtcagggc gaactctcta tcgcctgcct
      301 gccggtcttt tcacaatcct ttttgccgcc gctactaccg ccttttttgg cgcgttatcc
      361 ggatgtcagc ctgaatattg tgccgcagga gtcgccgttg ctggaagagt ggctctccgc
      421 tcagcgccac gacttagggc tgacggagac gcttcatgcc ccggcaggaa caacccgcac
      481 cgagttacta acgctgaatg aagtgtgcgt actgccctgc gaccatccgc ttgccgccaa
      541 aacggtactg acgccagacg attttcaggg ggaaaacttt atcagcctct cccgcctgga
      601 cagctatcga cagttgttgg atacgttatt tgccgaacat caggtgaagc gcagaatggt
      661 ggtggaaacg catagcgcgg cctccgtctg cgcgatggtg cgcgccgggg cgggcgtttc
      721 gatcgttaac ccgctgaccg cgctggacta tgccgccagc ggcgtcaccg tccgccgctt
      781 cagcattgac gtgcccttta ccgtcagcct gattcgcccg ctacaccgcc ccgcctccgc
      841 gctggttgac gccttcagta agcatttaca aacgcatctt tcgcgcctgg tcgaaccgct
      901 ggaggttatt ctggggccga tgacgaaagc ataaagctca cggcatctgc ggcatgaatt
      961 gccgtggtat cgaaaaccgg tagcgcgctt tgcgtctggg gaacaagcaa acctatttca
     1021 gtacagccaa aaataacgcc ctgcgcgcct tgcgcagcca gttgttcgat aacctgtaaa
     1081 taatagtggc gcgacgcgtc agtgaatatc ccctgacaga gctcgtcaaa aatcacctga
     1141 ttgatacgcg cccgatcgtc cgcctccggc acgatggtct caatcgcaaa ttgctgttcc
     1201 agccgcccgc gataaaaatc ctgctccatc gtatagcgag tccctaatag cgccacgcga
     1261 tgcaacccct gacgggcgat ggctcgcccg gtagcatccg cgatgtgtag gaaaggcaga
     1321 gaacaacgag attcaataat gtgcgcgatt ttatgcatgg tgttggtaca cagcacaata
     1381 ccttctgcgc ccgcctgctg taacccctgc gcggcctgcg ccaggatatc gcccgcttta
     1441 tcccattcgc cgcggcgttg acatacttca atatcgtgga aatctacgct atgcagcagt
     1501 aagctcgccg agtgcaggcc tcccagctgc tgtttaatgc cttcattgat taaacggtaa
     1561 taagggatag tcgattccca gctcatcccc cccaacagcc cgatcgtttt cactgcgctc
     1621 tcctttttgt aaagcattat ggcagtgaaa caaacttaca catccgtttc cagtctattt
     1681 ttcatcatgc cggataacag gcgtcatccg gcatgggagg ggggattaca cgccaatatt
     1741 tcttagcttc tcgcccgcca ttagcttgcg ttcgatgtgc tccagggtga catttttggt
     1801 ttccggaatc agccagaaag tgatgccgat aaaagcgata ttcagcgcgg tgtagagcca
     1861 gaatgtacct gccgcgccaa tgctgtccaa cagtgtcagg aatgtcgcgc cgatgatcat
     1921 gttcgatacc cagtttgtcg tggttgaaca ggtaatgcca aaatcacgac atttcagcgg
     1981 ctggatttcc gaacacagta tccacaccac cggagcggcg ctcatcgcgt aaccggcgat
     2041 acacatcatc gtcatcccaa cggaaagcca ggagagaccg cttgatgccg taccgttatc
     2101 aaactgcatc aggcagtagc ccaacaccaa tgtccctaac gccattacgc tgaaaccgat
     2161 ttttaacgcc ggtttacgcc cggccttatc gaccgtaaag acggcgataa aagtcgcgaa
     2221 cataaaggtc agtccgacca ccagcgtagc gatcatttgc tgttccgtgg tggtaaagcc
     2281 ggccatttta aaaatgcgcg gcgcatagta cataatgatg ttcatgccgg tgaactgctg
     2341 cattgcctgt agcaacatac cgaggaacac ggcgcggcga acattacggt tagctttaaa
     2401 taatgcccat ccgccctgct tgagtttgag gctttcccga atctcattca gttcatcacg
     2461 ggctttttcc gaggtatcgc gcagcatacg cagcacctct tccgcttcga tatggcgacc
     2521 tttttgcgcc agccagcgcg gactattcgg caggaatacc accagaataa tgagcaacac
     2581 cgcaggcagc gccagcacgc ccaacatcgc gcgccagttg ccgctgtagc tgaatgccgt
     2641 atcggataaa aaagccagca caatgcctaa cgtcaccatc agttgataca tactgatcat
     2701 tttaccgcga acattttcgc tagccatttc agagagataa agcggcgcgg tataggacgc
     2761 aatccctact gctacgccca gtatcacgcg ggcgccaatc aatacttcca cgctggaagc
     2821 aaacgccgac cccagcgagc cgagcacgaa caaaatcgcg ccagccatca ggctatactt
     2881 acgccccagc cgaaatgaaa gccagccgtt aaataatgcg ccaattgccg cgccaagcat
     2941 catactgctg acgacccatt cctgcagccg gctggtcagt acgaaatggt cggtaataaa
     3001 aggcagcgcc ccagcgataa cgccgatatc cagaccaaat aacagtcccg ctaccgctgc
     3061 agaaaccgaa acaaacatat tcatacgtcg tgtgtcgcga agcgaacgcg gcgttaaagc
     3121 agagtcatta atagagacca tattttcctg ccaccacaga gtaagacata gcctgaaagt
     3181 acgggatact cttcctcaag tgtcaggctg gaaacggcat aaatatggat taaatggcta
     3241 cgctatagcg atatg
//
LOCUS       DAJVSD010000338         3159 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.338, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000338 DAJVSD010000000
VERSION     DAJVSD010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3159
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.338"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..610
                     /gene="rfbF"
                     /locus_tag="OQP62_004266"
     CDS             <1..610
                     /gene="rfbF"
                     /locus_tag="OQP62_004266"
                     /EC_number="2.7.7.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glucose-1-phosphate cytidylyltransferase"
                     /protein_id="HCS1723646.1"
                     /translation="KGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVD
                     TGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFP
                     PGRFGALDIQAGQVRSFQEKPKGDGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTL
                     AQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAPWKTWE"
     gene            615..1694
                     /gene="rfbG"
                     /locus_tag="OQP62_004267"
     CDS             615..1694
                     /gene="rfbG"
                     /locus_tag="OQP62_004267"
                     /EC_number="4.2.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glucose 4,6-dehydratase"
                     /protein_id="HCS1723647.1"
                     /translation="MIDKNFWQGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAP
                     TVPSLFEIVRLNDLMESHIGDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIE
                     TYSTNVMGTVHLLEAVKQVGNIKAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSNS
                     KGCAELVASAFRNSFFNPANYEQHGVGLASVRAGNVIGGGDWAKDRLIPDILRSFENN
                     QQVIIRNPYSIRPWQHVLEPLSGYIVVAQRLYTEGAKFSEGWNFGPRDEDAKTVEFIV
                     DKMVTLWGDDASWLLDGENHPHEAHYLKLDCSKANMQLGWHPRWGLTETLSRIVKWHK
                     AWIRGEDMLICSKREISDYMSATTR"
     gene            1721..3034
                     /gene="rfbH"
                     /locus_tag="OQP62_004268"
     CDS             1721..3034
                     /gene="rfbH"
                     /locus_tag="OQP62_004268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein RfbH"
                     /protein_id="HCS1723648.1"
                     /translation="MTANNLREQISQLVAQYANEALSPKPFVAGASVVPPSGKVIGAK
                     ELQLMVEASLDGWLTTGRFNDAFEKKLGEFIGVPHVLTTTSGSSANLLALTALTSPKL
                     GERALKPGDEVITVAAGFPTTVNPAIQNGLIPVFVDVDIPTYNIDASLIEAAVTEKSK
                     AIMIAHTLGNAFNLSEVRRIADKYNLWLIEDCCDALGTTYEGRMVGTFGDIGTVSFYP
                     AHHITMGEGGAVFTKSGELKKIIESFRDWGRDCYCAPGCDNTCGKRFGQQLGSLPQGY
                     DHKYTYSHLGYNLKITDMQAACGLAQLERVEEFVEQRKANFSYLKQGLQSCTEFLELP
                     EATEKSDPSWFGFPITLKETSGVNRVELVKFLDEAKIGTRLLFAGNLIRQPYFANVKY
                     RVVGELTNTDRIMNQTFWIGIYPGLTTEHLDYVVSKFEEFFGLNF"
     gene            3069..>3159
                     /locus_tag="OQP62_004269"
     CDS             3069..>3159
                     /locus_tag="OQP62_004269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000697757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HCS1723649.1"
                     /translation="MKILIMGAFGFLGSRLTSYFESRHTVIGLA"
BASE COUNT          864 a          609 c          780 g          906 t
ORIGIN      
        1 taaaggatat gtgattaaag aatattttgc gaactacttc cttcacatgt cagatgtaac
       61 attccatatg gctgaaaacc gtatggaagt tcaccataaa cgtgttgaac catggaatgt
      121 cacattggtt gatacgggtg attcttcaat gactggtggt cgtctgaaac gtgttgctga
      181 atacgtaaaa gatgacgagg ctttcctgtt tacttatggt gatggcgttg ccgaccttga
      241 tatcaaagcg actatcgatt tccataaggc tcacggtaag aaagcgacct taacagctac
      301 ttttccacca ggacgctttg gcgcattaga tatccaagct ggtcaggtcc ggtcattcca
      361 ggaaaagccg aaaggcgatg gggcaatgat caatggtggt ttctttgtgt tgaatccatc
      421 ggttatcgat ctcatcgata acgatgcaac aacctgggaa caagagccat taatgacatt
      481 ggcacaacag ggggagttaa tggcttttga acacccaggt ttctggcagc cgatggatac
      541 cctacgtgat aaagtttacc tcgaagggct gtgggaaaaa ggtaaagctc cgtggaaaac
      601 ctgggagtaa gtagatgatt gataaaaatt tttggcaagg taaacgtgta ttcgttaccg
      661 gccatactgg ctttaaagga agctggcttt cgctatggct gactgaaatg ggtgcaattg
      721 taaaaggcta tgcacttgat gcgccaactg ttccaagttt atttgagata gtgcgtctta
      781 atgatcttat ggaatctcat attggcgaca ttcgtgattt tgaaaagctg cgcagttcta
      841 ttgcagaatt taagccagaa attgttttcc atatggcagc ccagccttta gtgcgcctat
      901 cttatgaaca gccaatcgaa acatactcaa caaatgttat gggtactgtc catctgcttg
      961 aagcagttaa gcaagtaggt aacataaagg cagtcgtaaa tatcaccagt gataagtgct
     1021 acgacaatcg tgagtgggtg tggggctatc gtgagaacga acccatggga gggtacgatc
     1081 catactctaa tagtaaaggt tgtgcagaat tagtcgcgtc tgcattccgg aactcattct
     1141 tcaatcctgc aaattatgag caacatggcg ttggtttggc gtctgtgagg gctggtaatg
     1201 tcataggtgg aggcgattgg gctaaagacc gtttaattcc cgatattctg cgctcatttg
     1261 aaaataacca gcaggttatt attcgaaacc catattctat ccgtccctgg cagcatgtac
     1321 tggagcctct ttctggttac attgtggtgg cgcaacgctt gtatacagaa ggtgctaagt
     1381 tttctgaagg atggaatttc ggcccgcgtg atgaagatgc gaagacggtc gaatttattg
     1441 ttgacaagat ggttacgctt tggggtgatg atgcaagctg gttactggat ggtgagaatc
     1501 atcctcatga ggcacattac ctgaaactgg attgctctaa agcaaatatg caattaggat
     1561 ggcatccgcg ttggggattg actgaaacac ttagtcgcat cgtaaaatgg cataaagcat
     1621 ggattcgcgg cgaagatatg ttgatttgtt caaagcgtga aatcagcgac tatatgtctg
     1681 caactactcg ttaagaaaat aagtttaagg aatcaaagta atgacagcaa ataacctgcg
     1741 tgagcaaatc tctcagcttg tcgctcagta tgcgaatgag gcattgagcc cgaaaccttt
     1801 tgttgcaggt gcaagcgttg tacctccttc cgggaaggtt attggtgcca aagagttaca
     1861 attgatggtt gaggcgtctc ttgatggatg gctaactact ggtcgtttca atgatgcctt
     1921 tgagaaaaaa cttggggaat ttattggagt tcctcatgtt ttaacgacta catctggctc
     1981 ttcggcaaac ttgctggcac tgactgcgct gacttcccca aaattaggcg agcgtgctct
     2041 caaacctggt gatgaggtta ttactgtcgc tgctggcttc ccgactacag ttaacccggc
     2101 gatccagaat ggtttaatac cggtattcgt ggatgttgat atcccgacat ataatatcga
     2161 tgcctctctc attgaagctg cagttactga gaaatcaaaa gcgataatga tcgctcatac
     2221 actcggtaat gcatttaacc tgagtgaagt tcgtcggatt gccgataaat ataacttatg
     2281 gttgattgaa gactgctgtg atgcccttgg gacgacttat gaaggccgga tggtaggtac
     2341 ctttggtgac atcggaaccg ttagttttta tccggctcac catatcacaa tgggtgaagg
     2401 cggtgctgta ttcaccaagt caggtgaact gaagaaaatt attgagtcgt tccgtgactg
     2461 gggccgggat tgttattgtg cgccaggatg cgataacacc tgcggtaaac gttttggtca
     2521 gcaattgggg tcacttcctc aaggctatga tcacaaatat acttattccc acctcggata
     2581 taatctcaaa atcacggaca tgcaggcagc atgtggtctg gctcagttag aacgcgtgga
     2641 agagtttgta gagcagcgta aagctaattt ttcctatttg aaacaaggtt tgcaatcttg
     2701 cactgaattc ctcgaattac cagaagcaac agagaaatca gatccatcct ggtttggctt
     2761 ccctatcacc ctgaaagaaa ctagcggtgt taaccgtgtc gaactggtga aattccttga
     2821 tgaagcaaaa atcggtacac gtttactgtt tgctggaaat ctgattcgcc aaccgtattt
     2881 tgctaatgtg aaatatcgtg tagtgggtga gttgacaaat accgaccgta taatgaatca
     2941 aacgttctgg attggtattt atccaggctt gactacagag catttagatt atgtagttag
     3001 caagtttgaa gagttctttg gtttgaattt ctaatttttg aggggggggg attcccctct
     3061 atgatttcat gaaaattcta ataatgggag cgtttgggtt ccttggatca cgacttacat
     3121 cctacttcga aagtcgacat actgtgattg gcttagcaa
//
LOCUS       DAJVSD010000339         3046 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.339, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000339 DAJVSD010000000
VERSION     DAJVSD010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3046)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3046)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3046
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.339"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..406)
                     /locus_tag="OQP62_004270"
     CDS             complement(<1..406)
                     /locus_tag="OQP62_004270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1723650.1"
                     /translation="MSEYYYSFKEKGFFWQPDTESDNYPDDLIPLTDEYYRELMQGQV
                     DGKYIEHRKGGPVLVEHREYTPEELVAQAEARKAELLAEAESVIAPLARAVKLKIATD
                     EEIKRLEAWELYSVMVNRVDTANPDWPEKPAQI"
     gene            complement(413..2032)
                     /locus_tag="OQP62_004271"
     CDS             complement(413..2032)
                     /locus_tag="OQP62_004271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001274643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1723651.1"
                     /translation="MSTKFYTLLTDIGAAKLASAAALGVPLKITHMAVGDGGGVLPTP
                     DAKQTALVNEKRRAALNMLYIDPQNSSQIIAEQVIPETEGGWWIREVGLFDETGALIA
                     VGNCPESYKPQLTEGSGRTQTVRMVLITSSTDNITLKIDPAVVLATRKYVDDKALELK
                     VYVDDLMAKHLAAPDPHSQYAQKDSPTLTGIPKVPTPAAGNSTKQIANTEFVASSIAA
                     MVDSAPAALDTLNELAAALGNDPNFATTMLNALGGKQPLDNTLTNLSGKDVAGLLAYF
                     GLGETINRAADALQKSQNGADIPDKPRFVQNIGLKETLNPTKRVSIGNIGTGVFDGST
                     PCINIGDSDSGFIGSADGVLDIYCNGAKVGYINGNGLHMLTDIHFDNASMTTNGDIFS
                     SVWGDNWLSIWITNQLNTRGTIDWINSELAIRDNNINTRATIDYVNQTFARKNTGSIQ
                     DWGWILDDSTGFIMQWGTLGNSNGTYNFPRAFPVGCFAVFVTNTNAQGTQVDNAFGYP
                     VSNSQFFAATKSSGMANLVNNFPVAWFAIGR"
     gene            complement(2029..2634)
                     /locus_tag="OQP62_004272"
     CDS             complement(2029..2634)
                     /locus_tag="OQP62_004272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HCS1723652.1"
                     /translation="MNSLLPPGSTPLERRLAQTCSGISDLQVPLRDLWNPATCPVSFL
                     PYLAWAFSVDRWDEGWTESVKRQVVKDAFYIHQHKGTTSAVRRVVEPFGFLIHIIEWW
                     QTGEAPGTFRLDIGVQDQGITEDTYLELERLISDAKPCSRHMIGMSINLQTSGPHWVG
                     AASYLGEEITIYPYINETIISGGTAHEGGAVHVIDTMRVNP"
     gene            complement(2627..>3046)
                     /locus_tag="OQP62_004273"
     CDS             complement(2627..>3046)
                     /locus_tag="OQP62_004273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HCS1723653.1"
                     /translation="APAEVVLTVLSREGDGTAEKDLLDVVEKALNSENVRPVADRLTV
                     RSAEIIPYRVEATIFLYPGPEAEPVMAAAKASLQKYIASQTRLGRDIRRSAIFAALHV
                     EGVQRVELASPLADMVLNKTQAASCTQWSVTNGGTDE"
BASE COUNT          657 a          866 c          730 g          793 t
ORIGIN      
        1 atatctgagc tggtttctcc ggccagtctg ggttagctgt atccacccgg tttaccatta
       61 cgctataaag ttcccatgct tccagccgtt taatctcttc atctgtggca attttcagtt
      121 ttaccgcccg cgccagtggc gcaataactg actctgcctc agcaagaagt tccgcttttc
      181 tggcttcagc ctgtgcaacc agctcttcag gcgtatattc gcgatgctca accagtaccg
      241 ggcctccttt cctgtgctcg atatattttc cgtccacctg gccctgcatc agctcgcgat
      301 aatactcatc tgtcagggga attaaatcgt cagggtaatt atcggattcg gtatccggtt
      361 gccagaaaaa acctttttct ttaaagctgt aataatattc gctcattgat atttatctcc
      421 caatcgcaaa ccaggctaca ggaaaattat tgaccagatt ggccattcct gatgacttgg
      481 tggcggcaaa aaactgactg ttgctcaccg ggtatccgaa tgcgttatcc acctgggtgc
      541 cctgagcgtt ggtattggtt acaaaaacgg caaagcaacc aacagggaaa gcgcgcggga
      601 aattgtaggt tccgtttgag ttaccaagtg ttccccactg cattataaat ccggtgctgt
      661 cgtccagaat ccagccccag tcctgaatgc tgccggtatt tttacgggcg aaagtctggt
      721 taacataatc aatggtggcg cgggtgttga tgttgttgtc acgaattgcc agttcactat
      781 tgatccagtc aatcgttcca cgggtattta gctgattagt aatccagata ctcagccagt
      841 tatcccccca cactgaacta aaaatgtcac cattagtggt catgctcgca ttatcgaaat
      901 gaatatcagt gagcatgtgt aatccgttac cattgatata acccactttg gcaccgttac
      961 agtaaatatc cagtacgcca tccgcgctgc cgataaatcc actgtcactg tcaccgatat
     1021 ttatacacgg tgtgctgccg tcaaaaacgc cggttccgat attgcctata ctcacgcgtt
     1081 ttgtcgggtt cagggtttct tttaaaccga tattttgtac aaaccgcggc ttgtcaggaa
     1141 tgtctgcacc gttctgtgat ttttgtagcg catcggcggc acgatttatc gtttctccta
     1201 aaccgaagta tgcgagaagg ccggcgacat cttttccgct taaattcgtc agcgtattgt
     1261 ccagcggctg ctttccacca agagcgttta acatcgttgt ggcaaaattc gggtcattcc
     1321 ccagagccgc tgccagctcg ttcagcgtat ccagtgctgc aggcgcagaa tccaccattg
     1381 ccgcaataga cgatgccaca aattccgtgt tcgcaatctg tttagtgctg ttacccgccg
     1441 ctggcgtcgg tacctttgga atccctgtga gtgtcgggct gtccttctgc gcatactgtg
     1501 aatgcgggtc cggcgcagca agatgctttg ccatcaggtc gtctacatat accttcagct
     1561 ccagcgcctt atcatctaca tatttacggg ttgccagcac tactgcaggg tcaattttca
     1621 gggtgatgtt atcggtgctg ctggtaatca gtaccatgcg cacggtctgc gtacgtccgc
     1681 tcccttctgt cagctgcggc ttgtagctct cagggcagtt acccacagcg atcagcgcac
     1741 cggtttcatc aaacaggcca acttcacgaa tccaccaccc gccctcagtt tccgggatta
     1801 cctgctcagc aataatctgg ctactgttct gcgggtcgat ataaagcata ttcagcgcag
     1861 cccggcgttt ctcatttacc agtgccgtct gctttgcgtc cggcgttggc aatactccgc
     1921 cgccatcgcc caccgccata tgggtaattt ttagcggcac accgagcgcg gcggcgctgg
     1981 caagttttgc cgcgccaata tccgtcagca gggtataaaa ttttgtgctc atggattcac
     2041 tctcattgtg tcaataacat ggaccgcccc gccttcatgc gcggtgccac cggaaataat
     2101 cgtttcgttg atatacggat agatcgtgat ttcttcgcca agatagctgg cggctcccac
     2161 ccaatgcggg ccgctggtct gcagattgat ggacatgccg atcatgtggc ggctacatgg
     2221 tttggcatcg cttatcagtc gctcaagttc cagataggta tcttcagtga tgccctggtc
     2281 ctgcacgccg atatccaggc gaaacgtgcc cggtgcctct ccggtctgcc accactcaat
     2341 aatgtggatc aaaaagccga acggctccac cacccgccgc acggcactgg tggtcccttt
     2401 atgctgatga atataaaaag catccttcac cacctggcgc ttgacgcttt ctgtccagcc
     2461 ctcgtcccag cgatccacag agaacgccca ggcgagataa ggcaggaaac tgaccggaca
     2521 ggttgccgga ttccacaagt cacgaagcgg cacctgcaga tcagaaatcc cgctgcaggt
     2581 ttgcgccaat cggcgctcca gtggtgttga acccggtggc agcagactat tcatccgttc
     2641 ctccgttggt tacgctccac tgcgtacatg atgccgcctg tgttttgttc aggaccatat
     2701 ccgccagagg agaagccagc tccacacgct gcacaccctc aacatgcagg gcggcaaaga
     2761 tggcgctacg gcgaatatcc cgaccaagac gcgtctgact ggcgatgtac ttctgcaggc
     2821 tggcttttgc cgctgccatt accggctctg cttccggtcc cggatagaga aaaatagtgg
     2881 cttccacccg gtacgggatg atttctgcgc tgcgaaccgt aagacggtca gccaccgggc
     2941 ggacgttctc actgttcaga gctttttcca ccacgtccag caggtctttt tctgctgttc
     3001 catcgccttc gcggctcagg acagtcagca ccacctctgc aggtgc
//
LOCUS       DAJVSD010000340         3025 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.340, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000340 DAJVSD010000000
VERSION     DAJVSD010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3025)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3025)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3025
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.340"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..196
                     /locus_tag="OQP62_004274"
     CDS             <1..196
                     /locus_tag="OQP62_004274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723654.1"
                     /translation="YKFTWMDSDQIKFDNKKTNYEHNVALAWKLNKSFTPYVEVGNVA
                     VRNNTDERQTRYRVGLQYHF"
     gene            479..1759
                     /locus_tag="OQP62_004275"
     CDS             479..1759
                     /locus_tag="OQP62_004275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1723655.1"
                     /translation="MIAKFFPWYSEITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLI
                     KADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGL
                     ASGVIMLTLSRFIVGMGMAGKYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAY
                     FMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGLGKHSQSAWSVFS
                     LSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAA
                     FGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMAT
                     NVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF
                     IVAFWTATILLIIGLSIPDRLKARRERFQSTKEF"
     gene            1770..2876
                     /locus_tag="OQP62_004276"
     CDS             1770..2876
                     /locus_tag="OQP62_004276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HCS1723656.1"
                     /translation="MMTKYGVIGTGYFGAELARFMSKVEGAKITAIYDPVNAAPIAKE
                     LNCVATSTMEALCTHPDVDCVIIASPNYLHKAPVIAAAKAGKHVFCEKPIALNYQDCK
                     DMVDACKEAGVTFMAGHVMNFFHGVRHAKALIKAGEIGEVTQVHTKRNGFEDVQDEIS
                     WKKIRAKSGGHLYHHIHELDCTLFIMDETPSLVSMAAGNVAHKGEKFGDEDDVVLITL
                     EFESGRFATLQWGSSFHYPEHYVLIEGTTGAILIDMQNTAGYLIKAGKKTHFLVHESQ
                     AEDDDRRNGNISSEMDGAIAYGKPGKRTPMWLSSIMKLEMQYLHDVINGLEPGEEFAK
                     LLTGEAATNAIATADAATLSSNEGRKVKLTEILG"
BASE COUNT          793 a          592 c          759 g          881 t
ORIGIN      
        1 atataaattt acctggatgg atagcgatca aattaaattt gataacaaaa aaacaaacta
       61 tgaacataat gtggctttag cctggaaact gaataagtca tttacaccat acgttgaggt
      121 cggaaatgta gcggtgagaa ataataccga tgagagacag acccgttatc gcgttggatt
      181 acaataccac ttttgagaaa ggttaaagag ttactgtact aatctttgct tagtattcat
      241 atcgataatc ttatagcccg tagctacgtt acagaacgtt agactttgtc ttgagtattc
      301 acgtccttaa cgtagctacg aacaaggatg ataaacaatg aatatacgcc ttacatagct
      361 acgatctcag gcggttgtcg gaaagtgccg gttgatagtg tcttattcgg caattgatat
      421 gacttaaaaa ttaattccgt aagcatttca gacggtaaca gcaaataagg gttttattgt
      481 gatagcaaaa ttcttcccgt ggtatagcga gataacacgt ccacaaaaaa atgctttatt
      541 ttcagcatgg ctgggttacg tttttgatgg cttcgacttt atgctgattt tctacattat
      601 gtatctgatc aaggctgact taggattgac agatatggag ggcgcattcc ttgccacagc
      661 ggcctttatt gggcgaccat ttggcggggc gctatttggt ctgctggcag acaaatttgg
      721 ccgtaagccg ttaatgatgt ggtcgatagt tgcctattct gtaggtacag ggttaagtgg
      781 cctggcttcc ggtgtaatta tgctgacgct tagtcgtttt attgtcggta tggggatggc
      841 ggggaagtat gcttgcgctt ctacttatgc cgtggaaagt tggccaaagc atttaaaatc
      901 taaagcgagc gcatttctgg tttcaggttt cggtattggt aacatcatag cagcctattt
      961 tatgccgtca tttgccgaag cgtatggttg gcgtgctgct ttttttgtcg gtttgctacc
     1021 cgttctttta gtaatctaca tccgggccag ggctcctgaa tctaaagagt gggaagaagc
     1081 caaactcagt ggtctcggaa agcattcaca aagtgcctgg tcagttttct ctttgtcaat
     1141 gaaagggcta tttaatcgag ctcaatttcc actgacatta tgtgtattta ttgttctgtt
     1201 ctctattttc ggcgcaaact ggccgatctt tggtctactg cctacatatt tggcgggaga
     1261 gggctttgat acgggcgtgg tctctaattt aatgacggcg gcggcattcg gcactgtatt
     1321 gggaaatatc gtttggggtc tgtgcgcaga tagaattggt ttgaagaaaa cgttcagcat
     1381 tggtcttctc atgtcctttt tattcatttt cccgttattc agaattccgc aagataatta
     1441 tttactgctg ggcgcatgtt tattcggttt aatggcgact aacgtaggtg ttggcgggct
     1501 ggttcccaaa tttctctacg actactttcc tcttgaggtt cgtggtttgg gtaccgggct
     1561 tatttataat cttgctgcga catcaggcac attcaattca atggcggcga cctggcttgg
     1621 aataacaatg gggctaggcg ctgcgctaac gttcattgtt gctttctgga ccgcaacaat
     1681 tctactcatt attggcctat ccattccgga tagactaaaa gcacgtcgtg aaaggtttca
     1741 gtcaacaaaa gaattttaat agaggataaa tgatgacgaa atacggtgtt ataggtacag
     1801 gttattttgg cgctgaactg gcgcgattta tgtctaaggt tgaaggggcg aaaatcactg
     1861 cgatttacga tccggtaaat gcggctccga tagcgaaaga gctgaactgt gtcgccactt
     1921 caacgatgga ggcgctttgt acccatcctg atgtggattg cgtaattatt gcttcaccaa
     1981 attacttaca taaagcgccg gtcattgcgg cggctaaagc gggtaaacac gtgttttgtg
     2041 aaaaacctat cgccttaaat taccaggatt gtaaggatat ggttgatgcc tgcaaagaag
     2101 ctggtgttac ctttatggcg ggtcacgtta tgaacttttt tcacggggtt cgccacgcta
     2161 aagcgctcat caaagccggt gaaatcggtg aagttacaca agttcacact aaacgtaatg
     2221 gttttgaaga cgtgcaggat gagatctcat ggaagaagat tcgcgcaaag tcaggtgggc
     2281 atctgtacca tcacattcac gagctagatt gtacactgtt catcatggat gaaaccccat
     2341 ccctggtttc aatggcggcg gggaatgttg cgcacaaagg tgaaaaattt ggtgatgaag
     2401 atgatgttgt cctaatcacc cttgagtttg aaagcggtcg tttcgcgaca cttcagtggg
     2461 gatcatcgtt ccactaccct gagcactatg tattaattga gggcacgaca ggtgcaattc
     2521 tcattgatat gcaaaacacg gctggttatc taataaaagc gggcaaaaaa acacactttc
     2581 ttgtgcatga aagccaggcg gaggatgatg atcgtcgcaa cggtaacata tccagcgaga
     2641 tggatggcgc aatcgcttat ggtaaacccg gtaaacgtac gccgatgtgg ctctcatcaa
     2701 ttatgaaact ggagatgcag tacttgcatg atgtgataaa cggtctggag ccaggcgagg
     2761 agtttgctaa attgctaacg ggagaagcgg cgacaaatgc cattgctacc gctgatgctg
     2821 cgacgctttc ttcaaacgag gggcgcaaag ttaaactcac tgaaattctt ggctaaaatt
     2881 taaagccgga tggtggtgtt attggccggt ggcgctgcgc ttatgtagac tggataaggc
     2941 gcccgtgaac tgtgccgcca tccggcaatg gacgggggct taatgcgaaa aaaagcccgt
     3001 acattcgtac gagctctttc ttaaa
//
LOCUS       DAJVSD010000341         3020 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.342, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000341 DAJVSD010000000
VERSION     DAJVSD010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3020)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3020)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3020
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.342"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            60..1130
                     /gene="rfaQ"
                     /locus_tag="OQP62_004277"
     CDS             60..1130
                     /gene="rfaQ"
                     /locus_tag="OQP62_004277"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001521713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptosyltransferase
                     RfaQ"
                     /protein_id="HCS1723657.1"
                     /translation="MEKPFRRILIIKMRFHGDMLLTTPVISTLKQNYPDAKIDVLLYQ
                     NTIPILSENPEINALYGISNKGAGTKEKIKNALSLIKKLRANSYDLVVNLTDQWSVAL
                     IVRFLNAKIKISQDFGNRQSALWKKSFTHLVPYAGEHAVERTLSALKPLALKQYVTET
                     TMSYRPEHWENMRQQLKQLGVTRQYVVIQPTARQLFKCWDNDKFSQVIDAVQRRGYQV
                     VLTSGPAADEMACVDAIACGCETKPVTGLAGKTRFPELGALIDHADLFIGVDSAPGHI
                     AAAVKTPVICLFGATDHVFWRPWTDDIIQFWAGNYQPMPERHELDRNKKYLSVIPAED
                     VIAATEKMLPHEARPIDLDSLL"
     gene            1127..2251
                     /locus_tag="OQP62_004278"
     CDS             1127..2251
                     /locus_tag="OQP62_004278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HCS1723658.1"
                     /translation="MRVAFCLYKYFPFGGLQRDFMHIAQTVAARGHQVRVYTQSWEGE
                     CPDNFELIRVPVKSRTNHGRNAEYYAWVQHHLRDHPVDRVVGFNKMPGLDVYYAADVC
                     YAEKVAQEKGFFYRLTSRYRHYAAFERATFEHGKQTQLLMLTNKQIADFQKHYQTEAE
                     RFHILPPGIYPDRKYSQQIPNSRQIYRQKNGISEQQKLLLQVGSDFTRKGVDRSIEAL
                     ASLPESLRQNTVLCVVGQDKPKKFAALAERSGVGTNVHFFSGRNDIAELMAAADLLLH
                     PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIVDANCGEAMTEPFRQDALNEVLLRA
                     LTQPSLRSAWAENARYYADTQDLYSLPEKAADIITGDLDG"
     gene            2244..>3020
                     /gene="rfaP"
                     /locus_tag="OQP62_004279"
     CDS             2244..>3020
                     /gene="rfaP"
                     /locus_tag="OQP62_004279"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptose(I) kinase RfaP"
                     /protein_id="HCS1723659.1"
                     /translation="MVELKAPLTTLWRGKDAFEEVKTLQGEVFRELEMRRTLRFELDG
                     KSYFLKWHKGTSLKEIVKNLISLRMPVLGADREWHAIHRLHELGVDTMHGVGFGEKGV
                     NPLTRTSFIITEDLTPTISLEDYCVDWAVNPPDAQVKWMIIKRVATMVRKMHAGGINH
                     RDCYICHFLLHLPFTGREEDLKISVIDLHRAQIRQHVPLRWRDKDLIGLYFSSMNIGL
                     TQRDIFRFMREYFSLPLREILQKDSGLIHQADVKAARIKER"
BASE COUNT          794 a          672 c          759 g          795 t
ORIGIN      
        1 ggcggtagcg tgcttttttc tgcttattta tccggacaat ttcaaccaaa gagtcgcttg
       61 tggaaaagcc atttcgaaga attctgatta taaaaatgcg ttttcatgga gacatgttac
      121 ttaccactcc tgtcatcagc acgctgaagc agaattatcc cgatgcaaaa atcgatgtgc
      181 ttctttacca gaacaccata ccgatattgt cggaaaatcc ggagattaat gcactctacg
      241 gcatcagtaa caaaggcgca ggaacaaaag agaagatcaa aaacgcgcta tcgttaatca
      301 aaaaattgcg tgctaactcg tatgatctgg tcgtcaatct caccgatcag tggagcgtgg
      361 cgcttattgt gcgtttttta aacgcaaaaa taaaaatctc gcaagatttc ggtaatcgtc
      421 agtctgcttt atggaaaaaa agctttacac atttagtacc ttatgcggga gaacatgctg
      481 ttgagcgcac attatccgcg ctaaagccgt tagcgctaaa acagtatgtc acggaaacca
      541 ccatgagcta tcgcccggaa cattgggaaa acatgcgaca acagctcaaa caacttggtg
      601 tgacccgaca atatgttgtt attcagccta cggcacggca gctatttaag tgctgggata
      661 atgataaatt ctcgcaggtt attgatgccg tgcagcgccg cggttatcaa gttgtactga
      721 cgtcaggccc ggccgcagac gagatggcct gcgtggatgc tattgcatgc ggctgtgaga
      781 caaaaccggt tactggtctg gcgggtaaaa ctcgctttcc tgaattgggc gcattgattg
      841 accatgcgga tctctttatc ggcgttgatt cggcccccgg tcatattgcc gcagcagtca
      901 aaacgccggt catttgtctt tttggcgcga cggatcatgt attctggcgt ccctggaccg
      961 acgacatcat tcagttttgg gcaggaaatt atcagccgat gcctgaacgg catgagcttg
     1021 atcgtaataa aaaatacctt tccgtgattc cggctgaaga tgttatcgcc gcgacggaaa
     1081 aaatgctgcc gcatgaggca cgccccatag atttggacag cctgctatga gagttgcctt
     1141 ttgcttatat aaatattttc cttttggcgg tctgcagcgt gattttatgc atattgctca
     1201 aaccgtggcg gcgcgaggtc atcaggttcg tgtttatact cagtcatggg aaggggaatg
     1261 cccggataac tttgaattaa tccgcgtgcc ggttaaatcc cggacgaacc acggtcgtaa
     1321 cgcagaatat tatgcctggg tgcaacacca tttgcgcgac catcctgtcg atcgggtggt
     1381 tgggttcaat aagatgccag gccttgatgt gtattacgcc gcagacgtgt gttacgccga
     1441 aaaagtcgca caggaaaaag gatttttcta tcgcctgaca tcacgctatc ggcattatgc
     1501 tgcttttgaa cgcgccacgt ttgaacacgg caagcagacg caactattaa tgctgacgaa
     1561 taagcagatt gctgacttcc aaaaacatta tcagactgaa gcggagcgtt ttcatattct
     1621 tcctccgggg atttacccgg atagaaaata tagccaacag atcccgaaca gtcgtcaaat
     1681 ttatcgtcag aaaaatggta tctcagaaca gcaaaaatta ctgttgcaag tagggtctga
     1741 ctttacccgt aaaggtgtgg atcgctctat tgaagcgctg gcatcgctac ccgaatcttt
     1801 acggcaaaat acggtgctct gtgttgtcgg gcaggataag ccgaagaagt ttgcagcact
     1861 ggctgaaaga agcggcgtcg gcacgaatgt gcattttttc tccggacgta atgatattgc
     1921 ggagttaatg gcggcagccg accttttact gcatccagcc tatcaggaag ctgctggtat
     1981 tgttttgctg gaagccatta ctgctggttt gccggtgttg acaaccgcgg tgtgcggtta
     2041 tgcacattat attgtggatg caaactgtgg cgaagcgatg acggaacctt tccgccagga
     2101 tgcgctaaat gaggttttac tcagagcgct gacacagcct tccttacgca gcgcctgggc
     2161 tgaaaatgcg cggtattatg ctgataccca ggatttatac agcttaccgg agaaggccgc
     2221 agatattatc acaggtgatt tagatggttg agctgaaagc gccgttaacc acactatggc
     2281 gcggtaaaga tgcttttgag gaagtgaaaa cgttacaggg cgaagtgttc agagaactgg
     2341 agatgcgtcg aacattgcgg tttgagctgg acggcaaaag ctacttcctg aagtggcata
     2401 aaggcacttc gctgaaagaa attgtgaaga acctgatttc gttacgtatg cctgttctgg
     2461 gcgctgacag agaatggcac gccattcatc gtctacatga gctgggcgtt gatacgatgc
     2521 acggcgttgg ttttggtgaa aaaggcgtaa acccgctaac cagaacatca tttattatca
     2581 ccgaagattt aacgcctacc attagccttg aagactactg tgttgactgg gctgttaatc
     2641 caccggacgc gcaggtgaag tggatgatta ttaagcgtgt tgcgactatg gtacgtaaaa
     2701 tgcacgccgg gggaattaac catcgcgact gttatatttg ccactttctt ctgcatttac
     2761 ctttcactgg tcgcgaagag gatttaaaaa tctccgtaat cgacctgcat cgcgcgcaga
     2821 tacgtcagca cgttcccctt cgctggcgtg acaaagattt aattgggctt tatttttctt
     2881 caatgaatat tggcctgact cagcgagata tattccggtt tatgcgtgag tatttctcac
     2941 tccccctgcg agagattttg caaaaagact cggggttgat tcatcaggcg gatgttaaag
     3001 ccgctcgaat taaagaaaga
//
LOCUS       DAJVSD010000342         3018 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.343, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000342 DAJVSD010000000
VERSION     DAJVSD010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3018
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.343"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..143
                     /gene="ompL"
                     /locus_tag="OQP62_004280"
     CDS             <1..143
                     /gene="ompL"
                     /locus_tag="OQP62_004280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462896.1"
                     /note="porin involved in the transport of small molecular
                     weight solutes (up to 600 Daltons) across the cell wall;
                     specific substrate still unknown; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="porin OmpL"
                     /protein_id="HCS1723660.1"
                     /translation="WEITNTFRYRINEHWLPYFELRWLDRNVGLYHREQNQIRIGAKY
                     FF"
     gene            300..1148
                     /locus_tag="OQP62_004281"
     CDS             300..1148
                     /locus_tag="OQP62_004281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STM4015 family protein"
                     /protein_id="HCS1723661.1"
                     /translation="MNKRFNIDWDNELTQEQLINLILTDEDLPKLRSLTIGNWGDCWE
                     DETCQPIIDMIVENAPRFSHLESLFIGDMESEDCEISWIKQGDYSRLYAALPNLKELI
                     IKGASDLRLGAIHHEKLEHLEIISGGIPSNVLAELQNAQLPALKTLKLFLGVEEYGFD
                     GSLDNVMALVSKDLFPQLNHLGLMNSEEQDDIARRVLESNILPQLNVLELSCGTLTDS
                     GAEALLEHKDRIAHLETLDLHHHYLTPEMQEKLKAALPIPLNLSEALEPDDYDGDIYM
                     NAMYTE"
     gene            1161..2186
                     /locus_tag="OQP62_004282"
                     /pseudo
     CDS             1161..2186
                     /locus_tag="OQP62_004282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462894.3"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="STM4014 family protein"
     gene            2179..>3018
                     /locus_tag="OQP62_004283"
     CDS             2179..>3018
                     /locus_tag="OQP62_004283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462893.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STM4013/SEN3800 family hydrolase"
                     /protein_id="HCS1723662.1"
                     /translation="MYNSMDEVPVSLHASIDTGDGEFDMNALISNNAHILFIVLDSLR
                     YDIALQEQTAGNTPNLNHYGQWTKCEAAGNFTWPSHHAMFSGFMPKPIDDTVNQTMLL
                     FPKDIGLGRKGPKNAFAFDDATWIKSLENKGYQTICIGGVSFFNNRSGMGKVFPSMFK
                     ESYWHPRFACTVKESMDNQIHYIQKIMAERAGSQPVMMYINIDTIHYPNHFYVEGAAP
                     GDTVETHAAALRYIDARIDGLLNIFRQTGGETFVIVCSDHGTCYGEDGKYFHSFNHPI
                     VNTV"
BASE COUNT          809 a          742 c          705 g          762 t
ORIGIN      
        1 attgggaaat cactaatacc ttccgttatc gtatcaatga acactggttg ccctactttg
       61 aattacgctg gttagatcgt aacgtgggcc tctaccatag agagcaaaac cagattcgta
      121 tcggggcgaa gtatttcttc tgatattatc gcctctattt tccgaatctg catcacagcg
      181 ggtagttgtt ctgcccgctc attcatcctg aatcagactc ccgatatccc gcctctaagc
      241 gccatgataa tattcgcaaa gcgttttacc atattcatgc ttatagagaa gggaaacaaa
      301 tgaataagcg attcaatatt gattgggaca atgaattaac ccaggaacag ctcattaatt
      361 taattttaac cgatgaagat ctgccaaagc ttcgctcact gaccattggt aactggggtg
      421 attgttggga agacgaaacc tgccagccta ttattgatat gattgtggag aacgcccccc
      481 gtttttctca cctggaatca ctgtttatcg gtgatatgga gagcgaagac tgcgagatct
      541 cctggattaa acaaggtgac tattccaggc tctatgcggc gttacccaat ctgaaggaac
      601 tgattattaa aggcgcgtcg gatctgcgac tgggcgctat acatcatgag aaactggagc
      661 acctggaaat catttccggc ggcatccctt ctaacgtact tgccgaacta caaaatgcgc
      721 agctccctgc attaaaaacg ctgaagctct tcctgggcgt agaggaatac ggttttgacg
      781 gttcgctgga taacgtgatg gcgctggtat cgaaagatct tttccctcag ctcaaccatc
      841 tggggttgat gaacagtgaa gagcaggatg atatcgcccg ccgggtgctg gaaagtaata
      901 tcctgccgca gcttaacgtg ctggaactct catgcggtac cttaactgat agcggcgcag
      961 aggcgctgct ggagcataaa gaccgaattg cgcatctgga aacactcgat ctccaccacc
     1021 actatttgac gccggagatg caggaaaagc taaaagccgc gctgccgata ccgctgaatc
     1081 tttcagaagc gctggagcct gatgattacg atggcgatat ttatatgaat gcgatgtaca
     1141 ccgagtgatt gtgtagggga atgtgcacat tcccctacac accgataaag ggatttattg
     1201 tgattacgct cattggcccc catcagagca agcgcacgca ttattttatg caggctgccg
     1261 ccatacttgg ggaatccgtc acggcgctga ctcatccgca agcgctggac gcttcgctga
     1321 cctctggcat cgttaaaatc gacccgccag tacacaatga aactaacatc cgcaaaataa
     1381 acgcgatcgg tctggactat atccattttt tgcagaacat ggcagcgcgt cctggcatca
     1441 cctagcttaa ccatccggcg ggcctcattc acctgttgga taaaaaacgc tgcaagcggc
     1501 gcttactgga acacggcatc cccacgccgc cgttggtagc ggaagacgta aaaagttttg
     1561 cacagctcac cgccatcatg gaggaaaaaa gggtcgccag cgtgttcatt aagccctcgc
     1621 tgggttttgg cgcggcgggc gttatcgctt tgcgccgtca tcctgacggc gcaaagcagg
     1681 tgctttacag cgcgattgcc atatcagggc aacagctatt taacagcaaa aaaatccaac
     1741 agtatcgtca gaaagaagat atccagctca ttattgatgg cgttcttcag caggaaaacc
     1801 tcgtcgaaca gtggctgccc aaagccagcg taaagcataa aacctatgat ttacgcatcg
     1861 tctgtctgga tggcgaaatt atctggcgag tggtcagaac ctcctcgcag cccattacta
     1921 acttacacct gcaaaaccag gcttaccgct tcgaaagtct ggagttatct gccgcaaaag
     1981 tggctgagat cgatacgctc tgtcaaaatg ccatgcggct ttttcctggc attcgcttag
     2041 cgggtattga tgttttactt accaccagcc tgacgccgta tattattgaa attaatggcc
     2101 agggtgattt gatttatcag gatgcgcagc agaacaatct aatttatcag gcgcaaatcc
     2161 gggccatgag gaagcaaaat gtataattca atggatgaag tccccgtctc gctacacgcg
     2221 tcgattgaca caggcgatgg cgaattcgat atgaatgcgc taattagtaa taacgctcat
     2281 attcttttta ttgtactgga ctcgttacgc tacgatattg cgcttcagga acaaaccgcc
     2341 ggaaatacgc ccaaccttaa tcattatgga caatggacga aatgcgaggc ggccggtaat
     2401 tttacctggc cttcgcatca cgccatgttt tcaggtttta tgccaaaacc tattgatgat
     2461 accgttaatc agaccatgct gcttttccca aaagatatcg gacttggtcg taaaggcccg
     2521 aaaaatgcat ttgcctttga tgacgcaaca tggataaaaa gtctggaaaa taaaggctac
     2581 cagaccatct gtattggcgg cgtctctttc tttaataacc gctccggcat gggaaaagtg
     2641 ttcccgtcga tgtttaaaga gagttactgg catccacgct ttgcctgtac ggttaaagaa
     2701 agtatggata accagatcca ttatatccag aaaatcatgg ccgaacgtgc tggcagccaa
     2761 ccggtcatga tgtatatcaa tatcgatacg attcattacc ctaaccattt ttacgttgag
     2821 ggcgcggccc ctggcgatac cgtagagacc catgccgccg cgctacgcta tatcgacgcc
     2881 cgcatcgacg gattactgaa cattttccgc caaaccggcg gcgaaacgtt cgttattgtc
     2941 tgttccgatc acggtacctg ctatggcgaa gacgggaaat atttccatag ttttaatcat
     3001 ccgatcgtta ataccgtt
//
LOCUS       DAJVSD010000343         3001 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.344, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000343 DAJVSD010000000
VERSION     DAJVSD010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3001)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3001)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3001
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.344"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..466)
                     /locus_tag="OQP62_004284"
     CDS             complement(<1..466)
                     /locus_tag="OQP62_004284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HCS1723663.1"
                     /translation="MSQNNYLIDKRVILDCERMTLSCAGELITISESERSLLITFYEG
                     LFKKDDLINYVWGRKGVVVSDASYYKLINQLRGSFDKIGLKGESVVTRPRVGVLLSVS
                     IEPLSDEAQDMPLPAVAETELSTVEVRHDDTIIPPIPGAVNRKDWLYFCLAAL"
     gene            complement(566..2140)
                     /locus_tag="OQP62_004285"
     CDS             complement(566..2140)
                     /locus_tag="OQP62_004285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic diguanylate phosphodiesterase"
                     /protein_id="HCS1723664.1"
                     /translation="MKVRKLFLMLFIAVPLIVMILVGLLAGIFQLKRDIAVSANTLLR
                     FSADISAASWQVAGKAARLAESSCTDTLKELSRTRAFTPYVRDIGFLENGDITCSFVT
                     GTERYHFSRLAGLSLPASYPERWLRSIGSMAEGPDRLVVVYVKKVAADKAAFVIVDSQ
                     YVQELMEILAAERASAFSLIFGAGEAITSAATLRGKAFLTQRFTSTDHTIQLMVRTPF
                     STLSAYWLQNLFIFIPLSLCLSVGMILFYRRWYLKRLSLAREISRGITHNEFTVHYQP
                     VFNVKHGSCGGVEALMRWPQPDGRFITPDIFITAAENEGMIIPLSRHLFELIAHDVIN
                     WTVPDDFYISVNISPAHLMDDGFIQDIEALRTRLGTITLMLELTERSLIVEPSQVAEK
                     LSTLREKGVLIAIDDFGTGYCSLSYLQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTII
                     TLSQRLGLNVVAEGVSTQHQLRYILSHGVGFVQGFLYARPMGTNDFMSWLGKSAQRQN
                     GLLKGESGSASDLVAE"
     gene            complement(2652..2953)
                     /locus_tag="OQP62_004286"
                     /pseudo
     CDS             complement(2652..2953)
                     /locus_tag="OQP62_004286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459337.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          891 a          718 c          616 g          776 t
ORIGIN      
        1 gaagcgcggc caggcaaaag tagagccaat cttttctatt cacagcgccc ggtattgggg
       61 gaataatagt atcatcgtgc cgcacttcaa ccgtcgataa ttctgtttca gcaacagcag
      121 gcaacggcat atcttgcgcc tcatcactca acggttcaat ggaaactgag agtaaaacac
      181 ccacgcgagg gcgagtcaca acagactccc ccttaagacc aattttatca aatgatcctc
      241 gtagctggtt aatcagttta taataactgg catcagagac cacaacacct ttgcgccccc
      301 agacatagtt aattaaatca tcttttttaa aaaggccttc ataaaaagtg ataagcaaac
      361 tgcgttccga ttcagatatc gttatcaact ctccggcgca ggaaagcgtc attcgttcac
      421 aatcaagaat aacccttttg tcaatcagat aattgttctg actcataaaa atatccgccc
      481 cagtgctatc acgtttcttc acggcataaa catattacta ggatatatcg tgctattgaa
      541 tttttttccg tagcgagttc ctgcattatt cagccaccag atcgctcgcg gatccgcttt
      601 cccccttgag caaaccattt tgccgctggg ctgacttgcc aagccaactc ataaagtcat
      661 tagtccccat cggcctggca taaagaaatc cctgaacgaa tcctaccccg tggcttaaga
      721 tgtaacgcaa ttggtgctgg gtactgaccc cttcggcaac cacattgagt cccagtcgct
      781 gactcagcgt aatgatagta tccaggacag gaacatcatc gctgctggta tcaatggtat
      841 cgataaacgt tctgtctatt ttaagagagt ctacaggtaa ttgctggaga taggagaggg
      901 agcaatagcc ggtcccaaaa tcatcaatcg ctattaacac gcctttttca cggagcgttg
      961 aaagtttttc tgcgacctgt gaaggttcta caatcaggct acgttcggtg agctccaaca
     1021 taagcgttat cgttcccaaa cgagtcctga gcgcctctat atcttgtata aaaccgtcat
     1081 ccataagatg cgcaggcgat atatttacgc tgatatagaa atcatccggt acagtccagt
     1141 ttatcacgtc atgagcaatc agttcgaaca gatgacgaga gagtggaata atcatgcctt
     1201 cattttctgc ggcggtaata aaaatatcgg gagttataaa acggccatcc ggttgcggcc
     1261 agcgcattag cgcctccacg ccgccgcaac taccgtgttt aacattaaaa acaggttgat
     1321 aatgtaccgt aaattcattg tgcgttattc ccctggaaat ctcccgggcc agagataagc
     1381 gttttaaata ccagcgcctg tagaacaata tcatccctac agaaagacat aatgacagcg
     1441 gaataaaaat aaaaaggttt tgtaaccagt atgccgataa cgttgagaaa ggggttcgca
     1501 ccatcagctg gatagtgtga tcggttgagg tgaaccgctg cgttaaaaac gccttaccgc
     1561 gcaacgtcgc agcgctggta atcgcctctc ctgcgccgaa tatcaggcta aaggctgatg
     1621 ctctttctgc agccaatatc tccatgagct cctggacata ctgcgaatcc acaatgacga
     1681 aagccgcttt atccgctgct acttttttca catacaccac aacaaggcga tcgggtcctt
     1741 cggccatact accgatagat cgcaaccacc gttccggata agaagcaggt aaagaaagcc
     1801 ctgccagccg ggaaaaatga tagcgttcgg ttcctgtgac aaaggagcaa gtgatatcac
     1861 cattttccag aaacccaatg tcacggacat aaggagtgaa ggcccgcgtt ctggacagtt
     1921 ctttcagcgt gtcagtacag gaactctcag ccagtctggc ggcttttccg gcgacttgcc
     1981 aggaggcggc ggatatatcc gcgctaaacc gcagcagcgt attggcgctg acggcgatat
     2041 ctcgttttag ctggaagata cccgcgagta accccaccaa tatcattacg atcagtggaa
     2101 cggcaataaa caacatcaga aatagctttc ttactttcaa atcattgccc tcttaccggc
     2161 cttccttttg ccactgtacg cttttatagg ataactaaag taacattaat agagaaaaga
     2221 aatattgaga gataggttat acgttcttaa tgatagcaag atggcactcc ctgtgccgaa
     2281 aacagacaag agaatatcaa tacccaacag gtgcaggata ctatcgttaa aatgagcgat
     2341 aacagatatc taaataaaga cgcattcaat atgttagcct gatgccaggt tcactgcctg
     2401 atgagacata accatcacgg aacgaattcc catcaataca gggattattg gttacaactc
     2461 aacgttacta ctggtggtac acacattata caaatgccga ttaagcgaaa acatgtaggt
     2521 gtttttccca attttgacaa tttttagctc attaatcgta ccgggttgta acaacctcaa
     2581 ccaggaaaat aaatcgccag cagtatcaga ctcaaaggtc ttaactgaat tgactttaaa
     2641 agtaaatgtt ttcatacccg ttctgcgcag tttgctgatg cagatgtcac gaaaaaaaaa
     2701 gccgtttctc tttcgtatcg gtagtaacat cgtagtgtag ggtaatcctg ccggatttaa
     2761 gatccagcac aagtccacca tccatgtaca attttcgtgg ttcaatatac gcttctgatt
     2821 ttgtcgtgca tataagatta ttggttctat aagagtcacg atttacccac tcaagcgcta
     2881 ttaccgatcc gattgcgaca atggcgataa atattacaaa tataatcagt aacgttcttt
     2941 tactgtaata cattttggca ccgccatttc aacaggattc aagcattgca gaaaaatatt
     3001 c
//
LOCUS       DAJVSD010000344         2826 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.345, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000344 DAJVSD010000000
VERSION     DAJVSD010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2826
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.345"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            124..855
                     /gene="artJ"
                     /locus_tag="OQP62_004287"
     CDS             124..855
                     /gene="artJ"
                     /locus_tag="OQP62_004287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein ArtJ"
                     /protein_id="HCS1723665.1"
                     /translation="MKKLVLAALLASFATGSIAAEKINFGVSATYPPFESLDASNKIV
                     GFDIDLATALCKQMQAECTFTNHAFDSLIPALKFRKYDAVISGMDITPERSKQVAFSN
                     PYYANSALVIAKKDTYKTFTDLKGKRIGMENGTTHQKYLQDKHPEVKTVAYDSYQNAI
                     IDLKNGRIDGVFGDTAVVNEWLKTNPQLGPATEKVTDPQYFGTGLGIAVRPDNKALLE
                     KLNNALAAIKADGTYQKISDQWFPQ"
     gene            complement(1074..2561)
                     /locus_tag="OQP62_004288"
     CDS             complement(1074..2561)
                     /locus_tag="OQP62_004288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase"
                     /protein_id="HCS1723666.1"
                     /translation="MKAIILLFDSLNKNYLPPYGDLLTKAPNFQRLAAHAATFDNSYV
                     GSMPCMPARRELHTGRYNFLHREWGPLEPFDDSMPELLKKAGIYTHLISDHLHYWEDG
                     GGNYHNRYSSWDVVRGQEGDHWKASVGEPPIPEVLRVPQKQTGGGVSGLWRHDWANRE
                     YIQQEADFPQTKVFDAGCDFIHKNHAEDNWLLQVETFDPHEPFYTTEEYLSLYDDEWQ
                     GSHYDWPRGKVSESEEAIAHIRCRYRALVSMCDRNLGRILDLMDEHDLWRDTMLIVGT
                     DHGFLLGEHGWWAKNQMPYYNEVANNPLFIWDPRSAVCGARRQSLVQMIDWAPTLLDY
                     FQQPIPADMQGQPLAKVIASDEPVREGALFGVFSGHVNVTDGRYVYMRAAQPGREHDI
                     ANYTLMPIKMNARYDVDELGKLSLAPPFKFTKGLQVLRIPAREKYKGVNSFGHLLFDL
                     RDDPQQQHPIHDEAIEARMINLLIRLMKENDAPAEQYRRLGLDVV"
     gene            complement(2571..2780)
                     /locus_tag="OQP62_004289"
     CDS             complement(2571..2780)
                     /locus_tag="OQP62_004289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001669315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter IIB"
                     /protein_id="HCS1723667.1"
                     /translation="MEHTAAGEVGGFTDWADIYAISKKLLDVVSLDPKHGQYLIPIEN
                     IMDSESIGKQIYDVVEKNFPHLLNK"
BASE COUNT          735 a          740 c          640 g          711 t
ORIGIN      
        1 tccgtctttt tttatccatt ttaaaatatt taatcatttt tattgcatac aaattcaatt
       61 gatggcattg taaatctatg ccgcagacac ggcgcataat cataagatta cgggagtgac
      121 atcatgaaaa agttagttct ggctgcatta ctcgcctctt tcgccactgg cagcatcgcc
      181 gctgaaaaaa tcaatttcgg ggtttccgcc acctatcccc cgtttgaatc cctggatgcg
      241 agtaataaaa ttgtgggctt cgatatcgat ctggcaaccg cattatgcaa gcaaatgcag
      301 gcagaatgta cttttaccaa tcatgctttc gatagtctta tcccggcgct gaaattcaga
      361 aaatatgatg ccgtcatttc cggaatggac attaccccgg agcgcagtaa gcaggtcgcc
      421 tttagcaatc cctattatgc gaactccgcg ctggtgattg ccaaaaaaga cacctataaa
      481 acctttaccg atctaaaagg taagcgtatc ggtatggaaa atggcaccac gcatcaaaaa
      541 tatctccagg ataaacatcc ggaggtcaaa accgtggcct acgacagcta ccagaatgcg
      601 attatcgacc tgaaaaatgg ccgtattgac ggcgtctttg gcgataccgc agtggtcaat
      661 gagtggctga aaacgaatcc gcaactgggt ccggcaacag agaaagtgac cgatccgcaa
      721 tacttcggta ccggacttgg catcgcggtg cgcccggaca ataaggcgtt gctggaaaaa
      781 ctgaataatg cgctggccgc cattaaagcg gacggcactt atcagaaaat cagcgatcag
      841 tggttcccgc agtaaaacgt atgtgattag cccaccgtgt tgcgaaatgg cagtataaat
      901 accttattca gcccacgggc cgctatcgga aactatcctg gcctgataag cgcagcgcca
      961 ttgagcattc tacagtttgt catcagtctc aaaggcctgc atcaacaggc gattcggact
     1021 catacttgcc gggtgacgct aacgcgtacc cggcttacaa cattgttatg tttttagaca
     1081 acatccagac ccagacggcg atactgctcc gccggagcgt cattttcttt catcaaacgg
     1141 ataagtaagt tgatcatcct tgcttcgatg gcctcatcat gaataggatg ttgctgctgc
     1201 ggatcgtctc tgagatcaaa caagagatga ccaaagctat tcacaccttt atatttttcc
     1261 ctggccggaa tacgtaatac ctgaagccct ttagtgaatt taaacggagg tgccagagat
     1321 aattttccca gttcatccac gtcataacgc gcattcatct tgatcggcat taacgtgtag
     1381 ttcgcaatgt catgctcacg ccccggctgc gcggcccgca tataaacata gcgtccgtcg
     1441 gtaacattaa catgtccgct aaacacgcca aacagcgcgc cttccctgac gggttcatca
     1501 ctggcaatga ctttcgccag aggttggccc tgcatatctg cgggaatagg ttgctgaaaa
     1561 taatccagta gcgttggcgc ccagtcaatc atctgcacca gcgactgccg tcgcgctccg
     1621 cataccgcgc tgcgcgggtc ccagataaac agcgggttat tcgccacctc gttataatag
     1681 ggcatttgat ttttagccca ccaaccgtgc tcccccagca agaagccgtg atcggtaccg
     1741 acaatcagca tcgtatcgcg ccagagatcg tgttcatcca tcagatcaag gatacgtccc
     1801 agattgcggt cgcacatgga aaccagggcc cgataacgac agcgaatatg cgctatcgcc
     1861 tcctcacttt cactgacttt gccgcgcggc cagtcataat gcgagccttg ccactcatcg
     1921 tcatagagcg ataaatattc ctcggtggta taaaacggct catgcggatc gaacgtctca
     1981 acctgcaata accagttatc ttcggcatga tttttatgga taaaatcgca cccggcgtca
     2041 aaaactttcg tctggggaaa atcggcttcc tgctggatgt attcgcggtt cgcccagtca
     2101 tgacgccata gcccggaaac gccgcctccg gtttgttttt gtggaacgcg cagtacttcc
     2161 ggaatgggcg gctcgccaac acttgccttc cagtgatcgc cctcctgacc gcgtactacg
     2221 tcccaggagc tatagcggtt atggtagtta ccgccgccgt cttcccagta atgcagatga
     2281 tcgctgataa gatgggtgta gatccccgct tttttcaata attccggcat ggaatcatca
     2341 aagggttcca gcggccccca ctcacgatgc aggaaattat agcgcccggt gtgcagttcc
     2401 cgacgggctg gcatacaggg catactgccg acataactat tgtcaaaggt ggcggcatgt
     2461 gccgccaggc gttgaaagtt aggcgctttc gttagcaaat caccataggg cggcaaatag
     2521 tttttattca gactgtcaaa cagcagaata atcgctttca tgactcaccc tcatttgttg
     2581 agcaggtgcg gaaaattttt ctctaccaca tcgtaaatct gtttacctat tgattcgcta
     2641 tccatgatat tttcaatggg aatgagatat tgtccgtgtt taggatcgag gctaacaaca
     2701 tcaagcaatt ttttcgaaat cgcataaata tctgcccagt cggtaaatcc accgacctct
     2761 cccgctgccg tatgctccat atcaaaagag aagtcatatt ttgctaacgc ttttttaaca
     2821 acagtc
//
LOCUS       DAJVSD010000345         2825 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.346, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000345 DAJVSD010000000
VERSION     DAJVSD010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2825
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.346"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(50..1264)
                     /gene="fabB"
                     /locus_tag="OQP62_004290"
     CDS             complement(50..1264)
                     /gene="fabB"
                     /locus_tag="OQP62_004290"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HCS1723668.1"
                     /translation="MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDAGM
                     RSQVWGNVKLDTTGLIDRKVVRFMSDASIYAYLSMEQAVADAGLAPEVYQNNPRVGLI
                     AGSGGGSPKFQVFGADAMRSPRGLKAVGPYVVTKAMASGVSACLATPFKIYGVNYSIS
                     SACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKA
                     SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG
                     AVRCMQMAMHGVDTPIDYLNSHGTSTPVGDVKELGAIREVFGDNSPAISATKAMTGHS
                     LGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTERELTTVMSNSFGF
                     GGTNATLVMRKL"
     gene            1424..>2825
                     /gene="mnmC"
                     /locus_tag="OQP62_004291"
     CDS             1424..>2825
                     /gene="mnmC"
                     /locus_tag="OQP62_004291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HCS1723669.1"
                     /translation="MKQYAIQPATLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLG
                     GNRLAERFPVHSHPLFIVAESGFGTGLNFLTLWQAFDSFRSAHPQATLQRLHFISFEK
                     FPLTRDDLALAHQHWPELAPWAEQLQAQWPLPLPGCHRLLLDRGRVTLDLWFGDINEL
                     TDQLDATLNQTVDAWFLDGFAPAKNPDMWTPNLFNAMARLARPGATLATFTSAGFVRR
                     GLQEAGFTMQKHKGFGRKREMLCGVMEQHLMPTLSAPWFYCSGSEKRETAIIGGGIAS
                     ALLSLALLRRGWQVTLYCADDQPAQGASGNRQGALYPLLSKHDAAINRFFPTAFTFAR
                     RLYDALPVSFDHAWCGVTQLGWDEKSQQKIAQMLSLALPAGLASALNAEEAEQAVGVT
                     TRCGGITYPAGGWLCPEQLTRAVIALATEQGLQTRFRHTLTSLVAQESRWQLRFTSGE
                     TASHETVVLANGHQINR"
BASE COUNT          603 a          833 c          766 g          623 t
ORIGIN      
        1 cgcattagcg acctgtttca ttgttgatac tacaacgtaa tagtcaggct tacaacttac
       61 gcatcaccag cgtggcgttg gtgccgccaa aaccgaagct gttagacatt acggtagtca
      121 gttcacgctc ggtcgtttcg gtcacgatgt tcaggcccgc agcctgctca tccagctctt
      181 cgatgttgat actcggcgcg ataaaaccgt gctccagcat tagcagagag tagatggctt
      241 cctgcacgcc agccgcgccc agcgagtggc cggtcatcgc tttggttgca gaaattgccg
      301 ggctgttatc gccaaacact tcacggattg caccgagttc tttcacgtcg cctaccggcg
      361 tggacgtacc gtgagagttc aggtagtcga tcggcgtgtc tacgccgtgc atcgccatct
      421 gcatgcaacg tactgcgcct tcgccagacg gagcaaccat gtctgcgcca tcggatgttg
      481 cgccatagcc gacgatttcc gcatagatat gcgcgccgcg cgccagagcg tgctccagct
      541 cttcgacaac aaccataccg ccaccgcccg cgatgacaaa cccatcacgg tgcgcatcat
      601 aggtacggga cgctttttca ggcgtatcgt tatatttggt ggacagtgcc cccatcgcat
      661 cgaactcaca ggccatttcc cagcacagct cttcgccgcc gccagcaaaa acgatgtcct
      721 gtttgcccag ttggatctgt tcaaccgcat tgccgataca gtgtgcggag gtcgcgcaag
      781 cggagctaat ggagtagttc acgccataaa ttttaaacgg cgtagcgagg caggcggaaa
      841 cgccggatgc cattgctttc gtcaccacat acgggcccac agctttcaga ccacgcgggc
      901 tacgcatggc gtctgcgcca aagacctgga atttcgggga gccgccgccg gaacctgcaa
      961 tcaggccgac acgcgggtta ttctgataga cttccggcgc cagaccggcg tcggccactg
     1021 cctgctccat agacagataa gcatagatgg aggcgtcgct cataaagcgc acgactttgc
     1081 ggtcaatgag gccagtggta tccagtttta cgttgcccca tacctggcta cgcatgccgg
     1141 cgtccttcag ctcctgagag aaagtgatcc ctgaacgtcc ttcacgcaga gatgccagga
     1201 cttcctgctg gttattaccg atgctggaaa cgatgcccag gccagtaatc actgcacgtt
     1261 tcattcaata cctctgtaat tcgcactatt tttaagtttc gattggcaca atagcgtaca
     1321 cttgtacgcc gaacaagtcc gatcagccat ttagtacgga aatttgcgcc atcaggcaca
     1381 catcgttaag atcgcgatac cgcccgtcag acgagtaact tacgtgaaac aatacgccat
     1441 acaacccgcc acactcgaat ttaacgctga gggtacacct gtttcccgag attttgatga
     1501 tgtctatttt tctaatgaca atggactcga agagacacgc tacgtttttc ttggcggcaa
     1561 tcgtcttgcg gagcgatttc ccgtacattc acatccatta tttatagtcg cggaaagcgg
     1621 ttttggcacc ggactcaact tcctgacgct gtggcaggcg tttgacagct ttcgttctgc
     1681 gcacccacag gcgacgctgc aaaggttaca tttcatcagc tttgagaaat tcccgttaac
     1741 gcgcgacgat ctggcgctgg cgcaccaaca ctggccggag ctcgcgccct gggcagagca
     1801 gctgcaggcg caatggccgc tgccgctccc ggggtgccac cgcctattgc tggatcgggg
     1861 tcgggtgacg ctggatttgt ggtttggcga tattaatgag ctgaccgacc aactggacgc
     1921 cacgctgaat caaacagtcg acgcctggtt cctcgacggt tttgccccgg cgaaaaatcc
     1981 ggatatgtgg acgccaaacc tgtttaacgc gatggcgcgg ctggcgcggc ccggcgcaac
     2041 gctggcgacg tttacctcgg cgggtttcgt ccgtcgggga ttacaggaag ccggttttac
     2101 catgcaaaaa cacaaaggct tcggacgtaa acgcgagatg ctttgtggag tgatggaaca
     2161 acacctcatg ccgacccttt ccgcgccctg gttttactgc agcggaagcg aaaaacgtga
     2221 aacggcgatc attggcggcg gcatcgccag cgcgctgtta tcactggcgt tactgcgtcg
     2281 cggctggcag gtgacgctct attgcgcaga tgatcagccc gcccagggcg cttccggtaa
     2341 tcgacagggc gcgctttatc cgctccttag caaacatgac gccgccatta atcgcttttt
     2401 cccgaccgca ttcacctttg cccgtcgcct gtatgatgcc ctgcccgtct cttttgatca
     2461 tgcctggtgc ggcgtgacac agctcggatg ggatgagaaa agccagcaga aaattgccca
     2521 gatgctgtcc ctggcgctgc ccgccggact ggcctcggcg ctcaatgccg aagaggcgga
     2581 acaggcggtt ggcgtgacga cacgctgcgg aggaattacc tatccggcag gcggctggct
     2641 gtgcccggaa caattaactc gcgcagtcat cgcactggcg actgaacagg gtttacaaac
     2701 gcgctttcgc catacgctca cgtcgctcgt tgcgcaggag tcgcgctggc aactgcgctt
     2761 tacgtcaggt gaaaccgcca gccatgagac tgtcgtcctg gcgaacggcc atcagattaa
     2821 ccgtt
//
LOCUS       DAJVSD010000346         2800 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.347, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000346 DAJVSD010000000
VERSION     DAJVSD010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2800)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2800)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2800
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.347"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(62..679)
                     /locus_tag="OQP62_004292"
     CDS             complement(62..679)
                     /locus_tag="OQP62_004292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001528503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723670.1"
                     /translation="MMKMSRTAIALSLLGMAAHPVCAAPSFEETARQVIIAFQQRDNA
                     KINALIDKKVGMYVLYRIGAGFDYKWMKKFDINKPIPDFNYLLGQVGWFSEHIPVDKE
                     FDHHTEVEYVCEKGWDHAGFFVSYTGSDNALLTFSMVNGADSGDQASDTRIANARRLE
                     LQSERVVAVPKEWGDGLIFHLSELHGLGKGWSLTLLDLVTEDCSA"
     gene            843..2204
                     /gene="yegQ"
                     /locus_tag="OQP62_004293"
     CDS             843..2204
                     /gene="yegQ"
                     /locus_tag="OQP62_004293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HCS1723671.1"
                     /translation="MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFN
                     HENLQLGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLKPVVEMGPDALIMSDPGLIM
                     LVREHFPAMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIRQQVPDME
                     IEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYNVQEGKEDVVGNIVHKH
                     EPIPVQNVEPTLGIGAPTDKVFMIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIAHVE
                     RLTKMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDPTLLETLEGLAHRGY
                     TEGFLRRHTHDDYQNYEYGYSVSERQQFVGEFTGERKGQLAAVAVKNKFSVGDSLELM
                     TPQGNINFTLEQMENAKGDAMPVAPGDGYTVWMPVPQDVTLDYALLMRNFSGESTRNP
                     HAK"
     gene            2656..>2800
                     /locus_tag="OQP62_004294"
     CDS             2656..>2800
                     /locus_tag="OQP62_004294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-LEE encoded effector protein NleB"
                     /protein_id="HCS1723672.1"
                     /translation="MARFNAAFTRIKIMFSRIRGLISCQSNTQTIAPTLSPSSSGHVS
                     FAGV"
BASE COUNT          741 a          763 c          630 g          666 t
ORIGIN      
        1 acatcctgat agcagaaaga tataaataag cagccattta ccctgattaa acatatatgc
       61 ctcacgcact acaatcttcc gtgaccaaat ccagcagcgt taaactccac cctttgccca
      121 agccatgaag ctcgctcaga tgaaaaatca aaccatcacc ccattctttc ggcactgcca
      181 ccactcgctc tgattgcagc tcaagccgcc tggcgtttgc tatacgggta tccgacgcct
      241 gatccccact atccgctcca ttcaccatgc taaacgtcag cagcgcatta tcagaaccgg
      301 tatagctgac aaaaaaaccg gcgtgatccc atcccttttc acaaacgtac tcaacctccg
      361 tgtggtgatc aaattcctta tccacaggaa tatgctctga aaaccaacct acctgcccca
      421 acaggtagtt aaagtcaggt atcggtttat taatatcaaa ttttttcatc catttataat
      481 caaacccagc cccaattcgg tacagcacat acatcccgac ttttttatca atcagggcat
      541 taattttcgc gttgtctcgc tgctgaaaag cgataatcac ctgtctcgcc gtctcttcaa
      601 acgacggagc ggcacaaacg ggatgcgcgg ccattcccag caaactcagc gcgatggccg
      661 tgcggctcat tttcatcatt ggctccccat taacatccgg tgttctatta gcgccaatat
      721 actctcgcaa tatttactcg gcctgtccgt aagcgtacaa tgcccgccct taaagtgagg
      781 actctcttcc agccgcctca tcaggtgagg cggatctgac ctgtcatcag aacgagaaaa
      841 tgatgtttaa accagaactc ctttcgccag cgggaacgct gaaaaatatg cgttacgctt
      901 tcgcttacgg tgccgatgcc gtctatgcgg gccaaccgcg ttactcttta cgcgtgcgca
      961 ataacgaatt caatcacgaa aatttgcagc ttggcatcaa cgaagcccac gcgctcggaa
     1021 aaaaattcta cgtggtggtg aacatcgccc cgcataacgc caagctcaaa acctttatcc
     1081 gtgacctgaa acccgtcgtc gagatgggcc cggatgcgct gatcatgtcc gatccagggt
     1141 tgattatgct ggtacgcgag cacttcccgg caatgccgat tcacctgtcg gtacaggcta
     1201 acgccgtaaa ctgggcgacg gtaaaattct ggcagcagat ggggctgacc cgcgtgattc
     1261 tctcccgcga gctgtcgctg gaagagattg aggaaattcg ccagcaggtg ccggatatgg
     1321 aaatagaaat tttcgtccac ggcgcgctat gcatggccta ttccggtcgc tgcctgcttt
     1381 ccggctacat caataaacgc gatccgaacc agggcacctg caccaatgcc tgccgttggg
     1441 aatataacgt gcaggaagga aaagaagacg ttgtcggcaa catcgtgcat aagcatgaac
     1501 cgattccggt acagaacgtt gagccgacgc tcggtatcgg cgcgccgacg gataaagtgt
     1561 ttatgataga agaggcccaa agaccgggcg aatacatgac cgcgttcgaa gacgagcatg
     1621 gcacctatat catgaactca aaagatttgc gcgctatcgc ccacgtggag cgcctgacga
     1681 aaatgggcgt ccactcgctg aaaatcgaag gccgcaccaa atccttttat tactgcgccc
     1741 gtaccgccca ggtctaccgt aaggccatcg acgacgccgc cgcgggtaaa cccttcgacc
     1801 ctacgctgct ggaaacgctg gaaggtctgg ctcatcgcgg ctataccgaa ggtttcctgc
     1861 gtcgccatac gcacgacgat taccagaatt acgagtacgg gtactccgtt tccgaacgcc
     1921 agcaatttgt cggcgagttc accggcgagc gtaaaggcca actggcggcc gtggcggtga
     1981 agaataaatt ctccgttggc gatagtctgg agctgatgac tccgcaggga aatatcaatt
     2041 tcactctgga acagatggag aacgccaaag gcgacgctat gccggtggcg cctggcgatg
     2101 gctataccgt ctggatgccc gtcccgcagg acgttacgct ggattacgca ctattgatgc
     2161 gtaatttctc aggcgaatca acgcgtaacc cccatgctaa gtagttaatt gcggttattt
     2221 tttcatggcg ggaagattct tagaaattga tcacataccg cttcgctcaa tgcgggtatt
     2281 attcaacgcg ctgaaaaaca taacccataa atgctagctg taccaggaac cacctccttg
     2341 gcctgcgtaa tctcccttac gcaggcttat tttttgcgta taatcaataa aaaagtggta
     2401 cttcccgcca catccgaaaa ttgaccacac taaccaaagc gcaaatgggc gcttaggttt
     2461 agagacctcc cctattcatg gccagccagc aagtcacaat cctccctgca tctggtcaga
     2521 ctcaggactt agcattctga cgtttacgtt taaaatcagt gaattaaatc aataactgct
     2581 ttgtgagtac ttacacaaaa agtttccagg ttattaaatt aaggttaaaa actgataatt
     2641 taagcgtgta aagttatggc acgttttaat gccgctttta caaggattaa aataatgttt
     2701 tcccggatta gaggtttgat ttcatgtcaa agtaatactc aaaccatcgc acctacgctc
     2761 agtccatctt catcaggcca tgtaagtttt gctggggttg
//
LOCUS       DAJVSD010000347         2765 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.348, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000347 DAJVSD010000000
VERSION     DAJVSD010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2765
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.348"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            352..618
                     /locus_tag="OQP62_004295"
     CDS             352..618
                     /locus_tag="OQP62_004295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723673.1"
                     /translation="MKFDNAWNQGVWYALRSATGRLSPQPFSVEDLPALGEECRRIMK
                     ITSAVYTSKKTLSERWFASAELLNLYLTKYGLSCLNCSRKKTTA"
     gene            787..927
                     /locus_tag="OQP62_004296"
     CDS             787..927
                     /locus_tag="OQP62_004296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460815.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723674.1"
                     /translation="MFRSTRTLPRNLQTYTEQASTEELHTDLNNMQSTGLYSIQQMVL
                     QL"
     gene            complement(969..2173)
                     /locus_tag="OQP62_004297"
                     /pseudo
     CDS             complement(969..2173)
                     /locus_tag="OQP62_004297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343613.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
     gene            2243..2664
                     /locus_tag="OQP62_004298"
                     /pseudo
     CDS             2243..2664
                     /locus_tag="OQP62_004298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001189081.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
BASE COUNT          724 a          663 c          647 g          731 t
ORIGIN      
        1 tttgcatttg gaatataacg ttataaataa gttaattaaa tgtatcaata gaaagtttat
       61 ttttactcct gcggggcagg tcacgtccgc tactcgctta aagcaaactg tcagttggag
      121 tctgagctgg tacaattaat gtgccactgg ttagaaatca gtaatacgat tttatcaggc
      181 tgatactctg gcctgtcagg atttgaggta tccacccggt ttaccagccc actgtatttg
      241 gcaccagtgg aacccacttc ccgatccagg atatccagta tccaccgccg aacctctttc
      301 cccaaaagat atgtgcaacc tcaagcgcct tgtctggatg atgaccacgg tatgaagttt
      361 gataacgcgt ggaatcaggg cgtttggtac gctctccgtt cagcaactgg acgcctttct
      421 ccccagcctt tcagcgttga agatttgcca gcgctgggtg aagagtgtag gcgaattatg
      481 aaaatcactt ctgccgttta tacttcgaaa aagacgttat cagaaaggtg gttcgcaagc
      541 gcggagttat taaaccttta cttaacgaaa tacggtttaa gttgcttgaa ttgcagcaga
      601 aagaaaacga cggcttgatg atgctggaca aattaagcga gcatggcatc aatggactga
      661 tacgccgtca ataaaaggaa gggtgcatgg acgatcccgt cacatcacca atcacaacag
      721 aagagcacaa aacaacattt cacagcgtaa atgataaaac acgatgccat tttcaatcaa
      781 aaacatatgt tcaggtccac aaggacacta cccagaaatc tccagaccta tacagaacaa
      841 gccagtaccg aggaattgca cactgatctc aacaacatgc aaagtactgg actatacagt
      901 attcagcaaa tggtcctgca gttatgaaat gcgcccaccc ggtgcagaag aaagaacctc
      961 acgactaaaa ttatcagcat caggcggtca ccgaacccga taataaaacg gctcatcgcc
     1021 agccaccagc tctggagcgg tatactccat tttttgacgc atccttgatc gccagataaa
     1081 taacttttcg tactgagtca tccgtcggga acaccttgca tttctttatc gcggcacgga
     1141 tcacgctgtt cagggattcg actgcgtttg tcgtgtagat ggccttgcgg atatccggcg
     1201 gataactgaa gagcgtattg aggttttccc ggtgcgcacg ccagcttttg ctgatttgcg
     1261 gatatttatc gtcccggact ttcgcgaacg catctatcgc catcagtacc gcatcttcgg
     1321 tcggggcctg atagaccatc ttccggccgc tggtgacggc tttgtagtct ttccaggcta
     1381 cgtatttcag gctgttacgc atcatatgga tactgcacag ctgaatatgg gtttgcggga
     1441 agacgctatt tatcgcatcc gggaagccct tcagaccatc cacacaggca atcaggatgt
     1501 cctgaaggcc ccgggttttc agctccgtca gcacgcttag ccagaacttt tcgcattcat
     1561 tttcggccag ccacataccc agtaactctt tctggcgttc ggtgttgata cccagtgcca
     1621 ggaagacggc tttgttgatt acgctgccat tctgacggac tttgacgaca acgcagtcca
     1681 tataaacaat ggggtacagc gcatccagtt gccggttttg cctctcagtg acctgctctt
     1741 ttacggcgtc ggtgacttta gatatcagcg aaggtgacac atcggcgtcg tacatctctt
     1801 tggaggtggc gacgatttcg cgggtagtca tgcctttggc gtagagggat aaaatttggc
     1861 tgtccatctg cgtaatgcgc gtctggtgct tcttaagtag ctgcggttcg aaggtgtttt
     1921 cacggtcacg cggcgtgttc agttcgatct cgccgtcatc gcataacacc gtttttgacg
     1981 agtagccatt gcgggtgttt gagcctgttt tgggggcgtt tttctcatac ccggggtggt
     2041 cagtcagcta cgcattgagc gccgtttcga cggttaattt cgtcagcata cgggaaaacg
     2101 gattgaggtc ggcttcggtt ttaaggcctt tagccagttc agccgcaagg aatttgagtt
     2161 tcttttcgtc cataattgcc tgtctccgtt actggagtga acatatcaaa aacaggcaat
     2221 tacacaattt taattacagt ctcagttcag tcacattatt gatgagcgac tgtacgttaa
     2281 gccaatcaag accgagatga aaatcgctct gccactttcg ctcacccctc cttccatggg
     2341 tttacgcctc agtacggtga ttgatcgttg ccgcctggta agccgtagcg aataccttat
     2401 cagcgctggc atacgcaaaa accgcccgaa cgggagtatt catcctgaca gcctgactaa
     2461 aaaatttgtt gcggcacgaa aatttaccgg aataaattta gtgataaccc accgacattt
     2521 cacgagatcc gcagcttatc cggacgacta tataaagatg cttacgggga agggtttgct
     2581 cagaaactcc tgggacatac ttccgagaac accacgaaac tctatatcga caaacgcgat
     2641 aataaagctt acgtgatgct ctgattttgc tgtaaaagaa atgttaaact ggatttggat
     2701 ctgatataac gaaaaagccc ggaatacaga aattctggaa aatttcggaa atttcggatt
     2761 attga
//
LOCUS       DAJVSD010000348         2732 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.349, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000348 DAJVSD010000000
VERSION     DAJVSD010000348.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2732
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.349"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            21..494
                     /locus_tag="OQP62_004299"
     CDS             21..494
                     /locus_tag="OQP62_004299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001665680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HCS1723675.1"
                     /translation="MHLLSDTYSAEKQLTKALPKLARATSNEKLSQAFQSHLEETQGQ
                     IERIDQIVESESGIKLKRMKCVAMEGLIEEANEVIESTEKNEVRDAALIAAAQKVEHY
                     EIASYGTLATLAEQLGYSKALKLLKETLDEEKQTDLKLTDLAVSNVNKSAERKSK"
     gene            568..1074
                     /locus_tag="OQP62_004300"
     CDS             568..1074
                     /locus_tag="OQP62_004300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HCS1723676.1"
                     /translation="MNYTEHYHDWLRDAHAMEKQAESMLESMASRIENYPDIKARIEQ
                     HISETKHQITMLEEVLDRNGISRSVLKDSMSKMAAMGQSIGGMFPSDEIVKGSISGYV
                     FEQFEIACYTSLLAAAKKAGDTASIPTIEAILKEEMQMADWLIKHIPQTTEQFLLRSE
                     ADGVEAKK"
     gene            1094..1972
                     /locus_tag="OQP62_004301"
     CDS             1094..1972
                     /locus_tag="OQP62_004301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese catalase family protein"
                     /protein_id="HCS1723677.1"
                     /translation="MFRHVKQLQYTVRVSEPNPGLANLLLEQFGGPQGELAAACRYFT
                     QGLSDDDAGRREMLMDIATEELSHLEIIGSLVGMLNKGAKGELAEGTESEAELYRSLT
                     QNGNDSHITSLLYGGGPALTNSGGVPWTAAYIDTIGEVTADLRSNIAAEARAKIIYER
                     LINLTDDPGVKDTLSFLMTREVAHQLSFEKALYSIRNNFPPGKLPPVEQYTDVYYNIS
                     QGDDPRGSWNSDENFNYVAEPMPAVDGGDGLATVKLPREQMALLKAMAERTKSDPTVD
                     PLTGAELGCGEPKEDK"
     gene            complement(2054..2692)
                     /gene="ompW"
                     /locus_tag="OQP62_004302"
     CDS             complement(2054..2692)
                     /gene="ompW"
                     /locus_tag="OQP62_004302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpW"
                     /protein_id="HCS1723678.1"
                     /translation="MKKFTVAALALTTLLSGSAFAHEAGEFFMRAGPATVRPTEGAGG
                     TLGHLNGFDVSNNTQLGLTFTYMATDNIGVELLAATPFRHKVGTGATGDIATVHLLPP
                     TLMAQWYFGDSSSKVRPYVGVGVNYTTFFDNDFNDNGKKTGLSDLSFKDSWGAAGQVG
                     VDYLINRDWLIGASVWYMDIDTTANYKMGGVQQHDSVRLDPWVFMFSAGYRF"
BASE COUNT          780 a          674 c          657 g          621 t
ORIGIN      
        1 aaaccgttga agaccttttt atccatctac tttcagatac ctatagtgca gaaaaacaat
       61 taaccaaggc tcttcctaaa cttgccagag ccacgtccaa tgaaaaatta agccaggcct
      121 ttcaatctca tcttgaagaa acccagggtc agattgaacg tattgatcag atcgtcgaat
      181 ctgaatctgg cattaaactg aaaagaatga aatgcgtcgc tatggaaggg ctgattgaag
      241 aagccaatga agtcatcgaa agtacggaga aaaacgaagt acgcgatgca gcgcttatcg
      301 ccgcggcgca aaaagtcgag cattacgaaa tcgccagcta cggcacgcta gccaccctgg
      361 ccgagcagct cggctatagc aaagcattaa aactgctcaa agaaaccctc gacgaggaaa
      421 aacaaactga tttaaaactt accgatttag cagtcagcaa tgttaataaa agtgctgaac
      481 gcaaatcgaa ataatatttt taattatcag cttgcatgat tccgatttta ttatcggagc
      541 agattatcac gcattgagga atgtaaaatg aattatactg aacattatca tgactggctt
      601 cgtgacgccc atgccatgga aaaacaggca gaatcgatgc ttgaatctat ggccagccgt
      661 attgaaaatt atcctgatat aaaagccaga attgaacaac atattagtga aaccaaacat
      721 caaattacca tgctcgagga agtgttggac cgtaatggca tttcccgttc ggtgttgaaa
      781 gactccatga gtaaaatggc agcaatgggg caatctatcg gtggcatgtt cccttccgat
      841 gaaattgtca aaggctcaat tagcggttat gttttcgagc agttcgaaat tgcttgttat
      901 acctccctgc tggcggcggc aaaaaaagct ggcgacactg cctcaattcc aacgattgaa
      961 gccattctga aagaagaaat gcaaatggct gactggctta tcaaacatat tccgcagaca
     1021 acggaacaat ttttactgcg atctgaagca gatggcgttg aagccaaaaa ataaataata
     1081 agcaggaggc aatatgtttc gacacgtaaa acaacttcaa tatactgtgc gagtgagcga
     1141 acctaatcct ggattagcga acctgctgct ggaacagttt ggcggcccgc agggcgaact
     1201 ggcggccgcc tgccgctact tcacgcaagg tttaagcgat gatgatgccg gtcgtagaga
     1261 gatgttaatg gacatcgcca ccgaggagct gagtcatctg gaaattatcg gctcactggt
     1321 aggaatgctt aataaaggcg ctaaaggcga gctggcggaa ggcaccgaaa gcgaagcgga
     1381 actttatcgc tcgctgacgc agaatggtaa tgacagccat atcacctctc tgctgtatgg
     1441 cggcggccct gcgttgacaa actccggcgg cgtaccgtgg accgcggctt atattgatac
     1501 tatcggcgaa gtcacagccg atctacgctc aaacatcgcg gcagaggcgc gagcgaagat
     1561 tatttatgaa cgcctgatta acctgaccga cgatcctggc gtaaaagaca cgctcagttt
     1621 cttaatgacc cgtgaagtcg cgcaccagct ctcttttgaa aaggcgctgt attcgattcg
     1681 taacaacttc ccgccgggta aattaccgcc ggtagaacag tataccgacg tgtactacaa
     1741 catatcgcaa ggcgacgatc cgcgaggtag ctggaatagc gatgagaact tcaactatgt
     1801 cgcagaaccg atgcctgctg ttgatggcgg cgatggcctg gcgacagtga aattgccgcg
     1861 cgagcagatg gcgctgctca aagcgatggc agaaagaacg aaatcggacc ccaccgttga
     1921 tcctctcact ggcgcagaac taggctgcgg cgaaccgaaa gaagacaagt gagttccgac
     1981 aagtaaaatc cgtgtgtcat gtcctttttt gaccccgcct ggcggggtct tttttcgtca
     2041 caacatcacg cgattagaaa cgatagcctg ccgagaacat aaatacccat gggtccagac
     2101 gcacgctgtc atgctgctgc acgccgccca ttttataatt ggctgtagta tcaatatcca
     2161 tgtaccagac agaggcgcca attaaccagt cgcggttaat caggtaatct accccaactt
     2221 gccctgccgc gccccaggaa tccttaaagc tcagatcgga cagcccggtc tttttaccat
     2281 tatcgttaaa gtcgttatcg aagaaggtgg tgtagttcac ccccacgccg acataaggac
     2341 gcactttgct gctggaatcg ccgaagtacc actgcgccat taacgttggc ggtaacaggt
     2401 ggaccgtggc gatatcaccc gtcgcgcccg tacccacctt atggcggaac ggcgtggccg
     2461 ccagcaattc aaccccgata ttgtccgtcg ccatgtaagt gaatgtcagg ccgagttgcg
     2521 tgttattact cacatcaaac ccgtttaaat gccccagcgt accacccgcc ccttctgtag
     2581 gtctgacggt tgccggacct gcacgcataa agaattctcc ggcttcgtgc gcgaacgcgc
     2641 tgcctgagag aagagttgtt aacgccagtg ccgccactgt aaattttttc atacccgctc
     2701 catcgttatg gttataaaag cgtgatgaat at
//
LOCUS       DAJVSD010000349         2604 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.350, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000349 DAJVSD010000000
VERSION     DAJVSD010000349.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2604
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.350"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            229..1188
                     /locus_tag="OQP62_004303"
     CDS             229..1188
                     /locus_tag="OQP62_004303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001765108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723679.1"
                     /translation="MASVLTLAAEHRDTPENLLRYLAKIRGISPFLTAAESCPEAAIP
                     NAEFLYTPFATALRQHNVPIVRFFSQQLVGETSSARENRNIVARKENPLLTLYKSNYI
                     SQYREQYRLEISQLLLNIMPELLNDTVYIYPIIQRNTELVAYFWQKHPPTIPLRRLEA
                     MVLLAKTESLISEVTHNPEILITPPIERWDRENLLTFILSNGDLVMIQSLIDANVVDW
                     KRAMEDGNNEPLHQAILRLRGGALENALLIQIIKAMQAQKALSNEQIAHYLPWTPTFP
                     AAFLQAGLSCEQLREVLNALVVGSEQVLHDTRQRLNALCPVAK"
     gene            1204..>2604
                     /locus_tag="OQP62_004304"
     CDS             1204..>2604
                     /locus_tag="OQP62_004304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000384560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723680.1"
                     /translation="MDYINRWLGSELLMFCVLPWGYAAAVASLLILMFSKKRSRQILL
                     WVLLPQWAFVVLLLPTLQYTQLLSQTGTVWMLMLLLPILSWAGLLPALLLGTWLRKPW
                     PAWLLCHIVFIGMLCPVMPELWRAISYQWQQQNIAQLLRQVQAGDLRQLESIHDNSTL
                     EQTLVQAVKAPGISEKNLRDLTARVASPFRFSREDGYFVNAPFFAAFESGNITAVRIF
                     SEQLMGDSPQAQANRTIVRRQNPLEYLPTPRFKPEGFRQTFFEMADILLRVMPDLLTD
                     EAYSGAIQLQDKETLAFFWQRREAQNPLYRAYYFLLQGQTKALLAQIKLTPQVLGQSV
                     YPNKNLLASLFIDADGETLRALVKGQMLNWQHIPQDKLTDGWNFLISRTLHTASKEDA
                     LPPDILAGILQSMQQQHTALSEALIVASLDYQDERHSLMTAYRMAWLDCNKLNAMIDK
                     VYPPEDTRRTNVRIKLA"
BASE COUNT          641 a          598 c          679 g          686 t
ORIGIN      
        1 ttgctgccct cgataataat tgctattttt tctagtcgag agtctccatt ttttatactg
       61 ggaactatcg tgtcccatac tatttttttg ttcgttttcg tttatgtgat ggacggcccg
      121 cgattatggc accacattgg tgaagactga gataactata aaattacccg actgtttgag
      181 cgcgcgaagg gggatgttca ggttttgcag gatgcatctt gttatcaatt ggcaagtgtt
      241 ttgacgctgg ctgcagaaca ccgcgataca ccggaaaatt tattgcgtta tctggctaaa
      301 atacgaggta tttcgccatt tttgacagcg gcagaatctt gccctgaagc ggcgatcccg
      361 aacgccgaat ttctttatac gccatttgct accgctcttc gccaacataa cgtaccgata
      421 gtacgctttt ttagccagca actggtgggc gagacatctt ccgccagaga gaatcgcaat
      481 attgttgctc gtaaagaaaa tccactgctg acgctttata aatctaacta tatatcacag
      541 tatcgcgagc agtacagact agaaattagt cagctattgc tgaatattat gccagaactg
      601 ttgaatgata ctgtctatat ttatcccatt atccaacgta acactgagtt ggttgcttat
      661 ttttggcaga aacaccctcc cactattcct ctgcgcaggc tcgaagcgat ggtgttgtta
      721 gccaaaacgg aatcgctaat aagcgaggta acccataatc cagaaatatt gatcacaccg
      781 ccgattgaga ggtgggatcg tgaaaaccta ctcactttca tactgagcaa tggcgatctg
      841 gtaatgattc agtcgcttat tgatgcaaac gtagtggact ggaaacgagc aatggaagac
      901 ggaaataatg agcctctgca tcaggccata ttacgactgc gtggtggagc attagagaac
      961 gcattgctga tacagatcat taaggcgatg caagcgcaga aagcgttatc caacgagcaa
     1021 atcgcccact atcttccctg gacaccgacg tttcctgccg cttttttaca ggctgggctt
     1081 tcctgtgagc aattgcgtga ggtgttgaat gctttagtag tggggagcga acaagtacta
     1141 cacgatacgc gacaaaggct gaatgcgctg tgtccagtcg cgaagtgact aaaggaatag
     1201 taaatggatt atattaatcg atggcttggc tctgaactgc tgatgttttg tgttctaccg
     1261 tgggggtatg ccgctgcggt ggcatcactg ctgatcctga tgttttccaa aaaacgcagc
     1321 cgacagattt tgctgtgggt attactacca cagtgggcat tcgtggtatt gctgttaccc
     1381 acgttgcagt acacccagtt gttgagtcaa acaggcacgg tatggatgtt gatgctcctg
     1441 ttgccgattc tgagttgggc gggcttgctg cccgcgctgc tgctgggaac ctggctgcgc
     1501 aagccgtggc ccgcatggct actgtgccat attgtgttca ttgggatgct gtgcccggtg
     1561 atgccggagc tgtggcgtgc tattagctat caatggcaac agcaaaatat tgcgcagttg
     1621 ctcaggcagg ttcaggcagg cgacctgcgt cagttagaga gcattcatga taacagtacg
     1681 ttggaacaga cactggttca ggcggtaaaa gcgccaggca tatcagaaaa aaacttgcgc
     1741 gatctgactg cacgtgtggc atcgcctttt aggttctcgc gggaagatgg ctatttcgtc
     1801 aatgcgccat tttttgctgc ttttgagagt ggcaatatca ctgcggtgcg tatttttagc
     1861 gagcagctca tgggcgactc cccgcaggcg caggcaaatc gcaccatcgt acggcggcaa
     1921 aatccgttgg agtatctccc cacgccccgt tttaaacctg agggatttcg ccagactttt
     1981 tttgagatgg ccgacattct gctacgggtc atgcccgatc tcctcaccga tgaagcctat
     2041 tcgggggcga tacagcttca ggataaagag acactggcct ttttctggca gcggcgtgaa
     2101 gcgcaaaatc cgctgtatcg cgcatattat ttcttgttgc aggggcaaac taaagcgctg
     2161 cttgcccaga taaaactgac gccgcaggtg ctggggcagt cggtctatcc gaataaaaat
     2221 ctgctggcgt cgctgtttat tgatgcggat ggcgagacgc tgcgtgcgtt ggtgaaaggg
     2281 cagatgctga actggcagca catccctcag gataagttga cggacggctg gaatttcctg
     2341 atttcacgca cattgcatac agcctcgaaa gaggacgcgc tgccgccgga tattctggcg
     2401 gggatactgc aaagtatgca acagcaacat acggcgttgt cggaagccct tattgtagcc
     2461 agccttgatt accaggatga aaggcatagc ctgatgactg cctaccggat ggcctggttg
     2521 gactgtaaca agcttaacgc aatgatcgat aaggtgtatc caccagaaga tacgcggcgt
     2581 accaatgtgc gtataaaatt agca
//
LOCUS       DAJVSD010000350         2600 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.351, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000350 DAJVSD010000000
VERSION     DAJVSD010000350.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2600)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2600)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2600
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.351"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            4..918
                     /gene="pocR"
                     /locus_tag="OQP62_004305"
     CDS             4..918
                     /gene="pocR"
                     /locus_tag="OQP62_004305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein PocR"
                     /protein_id="HCS1723681.1"
                     /translation="MISASALNSELINKIAQDFAQATTGLAVVVVNIHGDEISELFNF
                     TPFCQLMRQHPQHSTRCRMSDRCGGLEASKSDQPCIYRCHAGLTDFSIPLVIAGHLVG
                     FVLCGQVRLSNDVELVNILNVDDRWQADPELLNEFRNVPEMDYSRVIASADLLKLIVE
                     NCLKKQLNFVVIKDNPQQSEANKTTRGPTPHDSKMKKALRYIDAHLSDDLRLEDVASH
                     VYLSPYYFSKLFKKYQGIGFNAWVNRQRMVSARELLCHSDWSIASIARNLGFSQTSYF
                     CKVFRQTYQVTPQAYRQQINENSHPPSI"
     regulatory      1244..1419
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            1539..>2600
                     /locus_tag="OQP62_004306"
     CDS             1539..>2600
                     /locus_tag="OQP62_004306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobyrinate a,c-diamide synthase"
                     /protein_id="HCS1723682.1"
                     /translation="MLAGTGSGCGKTTVTLGLLRLLQKRALRVQPFKVGPDYLDTGWH
                     TAICGVASRNLDSFMLPPPVLNALFCEQMRQADIAVIEGVMGLYDGYGVDPNYCSTAA
                     MAKQLGCPVILLVDGKAVSTSLAAIVMGFQHFDPTLNLAGVIVNRVTSDAHYQLLKNA
                     IEHYCSLPVLGYVPPCDGVALPERHLGLITARESLVNQQSWHDFAATLEQTVDVDALL
                     SLSLLSALPAGMWPERPDNTAGAGLTLALADDEAFNFYYPDNIDLLERAGVNIVRFSP
                     LHDRALPDCQMIWLGGGYPELYAADLAANTAMLKHLRAAHQRGVAIYAECGGLMYLGS
                     TLEDSGGEIHQMANIIPGHS"
BASE COUNT          633 a          615 c          673 g          679 t
ORIGIN      
        1 atcatgattt ctgcgagcgc tctgaactca gaactcatta ataaaatcgc acaggatttt
       61 gcacaagcca ccaccggtct ggcggttgtg gttgtcaata ttcatggtga tgaaatatct
      121 gagctattca atttcacgcc gttttgtcag ttgatgcggc agcatcccca gcatagtaca
      181 cgttgtcgta tgagcgatcg ctgcggggga ctggaggcat cgaagtccga tcaaccctgt
      241 atttatcgtt gtcatgccgg tctaacggat ttttctattc cgctggtaat cgcagggcat
      301 ttagttggct ttgttttatg cgggcaggtt cgtttaagta atgacgtgga gctggtaaac
      361 attcttaatg tcgacgatcg ctggcaggct gaccctgagc tcttgaatga atttcggaat
      421 gtgccagaga tggactattc acgcgttatc gcttccgccg atcttcttaa actgatagtt
      481 gagaattgcc tgaaaaaaca gctcaatttc gtggttatca aagacaatcc gcagcaatcg
      541 gaggcaaata aaaccactcg tggccccact ccgcatgaca gtaaaatgaa aaaagcgctt
      601 cgctatattg atgcgcattt gtccgacgat cttcgtcttg aggatgtcgc ctcacatgtc
      661 tatctcagcc cctattactt cagtaagcta ttcaagaaat atcagggaat cggatttaat
      721 gcgtgggtga accgccagag aatggttagc gccagagaat tgctttgcca tagtgactgg
      781 agtattgcca gtattgcgcg taatttaggc ttttcgcaaa ccagttattt ttgcaaagtc
      841 ttccgccaga cctatcaggt tacgccgcag gcttatcgtc agcagataaa tgagaattct
      901 catcctccat cgatataaat agcaatattt tgctattgcc gatttttgat agtgttttgt
      961 atcttaatca tttcagaaag aaaatttatc tggtgtaaca ataaattgtc atagcgcaac
     1021 aaaataataa aatttagggc ataaactgca ccagttttta tttttgtgat gaagtacagt
     1081 gtcaggaaag ataagtttta ttacgctttg tcgatacgtt ttatcgtcaa tataccggta
     1141 aggatgagta gattaacgtc agatgagcaa ccgctcaggc tattgctcac agaaatgtaa
     1201 aacgtagcac attattaatt gccgttatgg gtgtgccgta cagccataac gtaaaccaac
     1261 aggtttgcca catttgtggt agggaagggg gtgaaaatcc cccgcagccc ccgctgctgt
     1321 gatgctgacg accccgtaaa gaccactgat cgcaagattg ggaaggacgg gcgaggagga
     1381 cgctaagcca gaagacctgc ctgtcggtga taaccaacaa cttcggtggg aagtgggttg
     1441 cgaagacgcg tacagtcgaa agactgaaca tgcgcgtacc tgtatacccc taccaccctg
     1501 aacaggatca gggtaatggc ggcaaggcat cacgctttat tcttgcaggc acaggaagcg
     1561 gttgcggcaa aaccacggtg acgcttggtt tgttgaggct gctgcaaaaa cgcgcgctgc
     1621 gcgtacagcc gtttaaagtt gggccagatt accttgatac cggctggcat accgctatct
     1681 gtggcgtggc gtcccgtaat cttgacagtt tcatgcttcc tcctcctgtt ctcaacgcct
     1741 tattttgcga acaaatgcgg caggcggata tcgctgtcat tgaaggcgtc atggggctgt
     1801 atgacggcta tggcgtcgac cccaattact gcagcacagc cgcgatggcc aaacagcttg
     1861 gttgcccggt catcctactg gtggacggca aggctgtttc aacgtcgctt gcggctatcg
     1921 ttatgggatt tcagcacttc gacccgaccc tcaacctcgc gggcgtgatt gtgaatcgcg
     1981 tcactagcga cgcccactat cagctcctca aaaatgccat tgaacattat tgctcactgc
     2041 cggtactggg gtatgtccct ccttgcgacg gcgtcgcatt acctgaacgc cacctggggt
     2101 tgattaccgc cagagaatcc ctcgtcaatc agcaatcatg gcatgatttt gccgccacgc
     2161 tggaacaaac agtggatgtg gatgcgctac tctcgctgag cctgttatca gcgcttccgg
     2221 cgggaatgtg gcctgaacgc cccgataaca cagcgggggc agggctgacg cttgctctgg
     2281 cggatgatga ggcctttaac ttttattacc ccgataacat cgatttgctg gagcgtgccg
     2341 gcgttaacat tgtgcgtttt agcccactgc atgaccgcgc attgcctgat tgtcagatga
     2401 tctggctggg cggtggatat cctgaattat acgccgcgga tctggcggca aatacggcga
     2461 tgttaaaaca tttgcgggcg gcgcatcagc gcggcgtggc gatttacgcg gagtgtggcg
     2521 gtctgatgta tctggggagc actctggagg atagcggcgg ggaaattcat cagatggcga
     2581 atattatccc cggtcacagc
//
LOCUS       DAJVSD010000351         2505 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.352, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000351 DAJVSD010000000
VERSION     DAJVSD010000351.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2505
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.352"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            1..2460
                     /gene="cas3"
                     /locus_tag="OQP62_004307"
                     /pseudo
     CDS             1..2460
                     /gene="cas3"
                     /locus_tag="OQP62_004307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000192071.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="CRISPR-associated helicase Cas3'"
BASE COUNT          639 a          613 c          623 g          630 t
ORIGIN      
        1 aattcgccag aggatttcaa aaatacgccg aattcccaga ctctccctta gtctctccca
       61 ttagcggtgt ttccgcattt gagagacatg attccttagg cttctattta tggggtaaat
      121 tatttgaagc gtggagttca ggtagtaatg aaattatcgc aggcattgaa ccagaaaatc
      181 gcgctaggtt tgaaagcgct ttaaatagct ggatgcttat tagcaccggg caccatggca
      241 tcccgccgga caccatgaaa aatagaagct cgctggcatt caccgatgaa gacattgtcg
      301 cagcaacgca ttatctggaa gcattaagtg aattattccc tttcactcta cctcaggaat
      361 ggaaaaccaa agcagggaga aaatgtttaa aacagcacag ttggtttttc gctgggcttg
      421 tcaccctcgc cgactggatg ggctcggatg aaagccagtt tccactgctc agcagcgcca
      481 tgccattgaa agattattgg cctctcgctt gtgaaaaagc ccaacaggcc atcctccgaa
      541 tgccgccgtt atctcagcac agccattatc aagatcaccg ggcattattt ccgttcattc
      601 agacgctcac ccctcttcag caacgagcaa gcgaactgga tatttcagca cccggtgcac
      661 agctggttgt cctggaagac gttaccggag caggcaaaac agaggccgca ctgattctga
      721 ctcaccgctt aatgtcagcc aataaaggcc acggtctcta cgttgggttg ccgacaatgg
      781 ccaccgcaaa cgccatgtat cagcgcctgg catcggctta tcatgcgcta tttaccgatg
      841 agtccaggcc atcgctcatc ctggcacacg gtgggcgaga aatgtcggac tctttccgac
      901 aatccatctg gcagccaaca gaaaatatag ctgaagatta tgcccgtgat gatggcaacg
      961 cgactactga gtgccatacc tggtttgcag attcacgcaa aaaagcgctg ctggcggaag
     1021 tcggcgtagg tacgctggat caactcttaa tggcggtgat gccttttcgc catcaatcgc
     1081 tccgattgct agggatgcgc gacaaaatcc tgctgctgga tgaagtgcac gcctatgatg
     1141 gttatatggt taaattgctg gaaggtttat tgcgcttcca tgccgcccag ggcggtagcg
     1201 ctattattct gagcgccact cttcccgccg ctttacggga aaaattactt aatgcgttta
     1261 gcgatggcgc ggaatttatg agcgctggtg gtagcgataa cgcgggttat ccatggttaa
     1321 gccacctcac ttcctccggt ctgttagagc aaccactggc cacacgtccc gaagtccaaa
     1381 ggactgtagc cgttaattgg atacagcagc gccaggaagc actggacatt atttatcgcg
     1441 ttgtggcaac cggacagtgc atttgttgga tccgcaacac ggttgatgat gcgctggaca
     1501 cttaccagca gttgctacac gagggaatcg ttccagagca ggatcttttg cttttccaca
     1561 gccgttttgc ttttatcgat cgtattgcta ttgaaaataa aacgttaaac tggtttggta
     1621 acaatgcccc cgtttctgaa cgacgtggta aggtattaat cgccacacaa gtcgttgaac
     1681 aaagtctcga tctggacttt gactggatga tcaccgatct ggcgccgatt gatttattga
     1741 tccagcgcgc cggtcgcctg caacgccata tccgcgatgc ccatgggcaa cgaaaatcta
     1801 cgcttccgga tgaacgccag ccaccagtat tgcatatttc tggcccctca ctggcaggag
     1861 caggcagaag agggctggtt ggggcaagag ctaaaaggta ccggctttgt ttacaccgat
     1921 catgcctgcc tgtggcgtac ccaggcgctg ctgcgtcaac atggtgagat ccgtatgccg
     1981 gataatgcca gagcactcgt tgacggcgta tacgagcaga aaattgctgc gccagcaggc
     2041 ttgcagacga tctctgacgt tgcctttggc aaagtcctta gccaacgttc agtggctgcg
     2101 caaaatttat tacgttacga tctcggttac gatcgagaag ccagcgactt tttatgggat
     2161 aaagatagag aattttctac ccgtctgggt gaagagagtg ttgatgttta tctcgccaga
     2221 aaagacattg atggacagct acgcccttta gttgatgaaa tagatttctg ctgggaaaaa
     2281 agtcgcttat ccgtccgaaa atcatggtgg caaaaaaatt ctggtacatt ccaatgtcca
     2341 gatgaggaaa cattagcctg tttcagaaaa cgccaccatc gcccttccgg acagattgtg
     2401 ctggtatctg ataccggaga agctagctat tacagtaaac gttttggatt ggttggataa
     2461 cgggtattat tctaactccg ttgtatagag aagttattac attag
//
LOCUS       DAJVSD010000352         2492 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.353, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000352 DAJVSD010000000
VERSION     DAJVSD010000352.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2492)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2492)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2492
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.353"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..577
                     /locus_tag="OQP62_004308"
     CDS             <1..577
                     /locus_tag="OQP62_004308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1723683.1"
                     /translation="QPAQNGFRSDLLLLSPEIIARFKTMYVQDYPPANLTSLCTPMSR
                     SLTFMWENVLDAVRQGLPVGLQEHQAMGLLLALLHDGAAGPLLIERRYTLTEQVRQLI
                     MLSPAKLWTAQEIARRLAMGTSTLRRRLQRESQSYRQIIEEVRMSCALSQLQSTTLPI
                     GEIALRCGYLSGSRFTARFRQHYGCLPSQVR"
     gene            626..907
                     /gene="yccX"
                     /locus_tag="OQP62_004309"
     CDS             626..907
                     /gene="yccX"
                     /locus_tag="OQP62_004309"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HCS1723684.1"
                     /translation="MSNVCIIAWVYGRVQGVGFRYTTQHEAQRLGLTGYAKNMDDGSV
                     EVVACGDAAQVEKLIKWLKEGGPRSARVDKILTEPHSPRETLTGFSIRY"
     gene            complement(904..1233)
                     /gene="tusE"
                     /locus_tag="OQP62_004310"
     CDS             complement(904..1233)
                     /gene="tusE"
                     /locus_tag="OQP62_004310"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusE"
                     /protein_id="HCS1723685.1"
                     /translation="MLIFEGKEISTDSEGYLKETTQWSEALAVAIAANEGIELSAEHW
                     EVVRFVREFYLEFNTSPAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGL
                     PKPVKCI"
     gene            complement(1320..1979)
                     /gene="yccA"
                     /locus_tag="OQP62_004311"
     CDS             complement(1320..1979)
                     /gene="yccA"
                     /locus_tag="OQP62_004311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000375124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease modulator YccA"
                     /protein_id="HCS1723686.1"
                     /translation="MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLAFSAITATASTV
                     LMLPSPGLILTLVGMYGLMFLTYKTANKPVGILSAFAFTGFLGYILGPILNAYLSAGM
                     GDVIGLALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL
                     HLAISAVFILISSGAILYETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASR
                     D"
     gene            2374..2461
                     /locus_tag="OQP62_004312"
     tRNA            2374..2461
                     /locus_tag="OQP62_004312"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2408..2410,aa:Ser,seq:tga)
BASE COUNT          632 a          618 c          671 g          571 t
ORIGIN      
        1 tcagcctgcg cagaacggtt ttcgctccga cctgttgtta ctttcaccgg agattattgc
       61 tcgctttaaa acgatgtatg ttcaggatta tccaccggca aacctgacat cgctgtgtac
      121 gccgatgagc cgtagcctga catttatgtg ggagaacgtg ttggatgctg tgcgccaggg
      181 gttgcccgtt gggctacagg aacatcaggc gatggggtta ctgttagcgc ttttacatga
      241 tggcgcggcg ggaccgctgc ttattgaacg gcgttacacc ctcacggagc aggtgcggca
      301 actgattatg ctctcacctg ctaagctatg gacagcccag gagatagccc gccgccttgc
      361 tatgggaaca tcgacgctgc gtcggcgttt gcagcgcgaa tcgcagagtt atcggcaaat
      421 tattgaagag gtacgcatgt cctgcgcgct ttctcaactg caatcgacga cgctgccgat
      481 cggcgaaata gcgctacggt gcggctacct gtcggggtcg cgatttacgg ccagattccg
      541 ccaacattat gggtgtctgc ccagtcaggt acgttaagta tgtcctgtat gcgtcttcac
      601 cgttgattat gaaaggagaa ccatcatgtc gaacgtctgc attatcgcct gggtttatgg
      661 tcgcgttcag ggcgtcgggt ttcgctatac cacgcagcat gaggcgcagc ggctggggtt
      721 aaccggctat gcgaagaata tggatgacgg aagcgtagaa gtggtggcct gtggcgacgc
      781 ggcgcaggta gaaaagctca tcaagtggct gaaagaaggc ggaccgcgct ctgctcgtgt
      841 ggacaaaatc ctcactgaac cgcacagccc tcgcgagacg ctaacaggat ttagtattcg
      901 gtattaaata cattttaccg gcttgggcag accggcgatt ttggtcgctt gctttgccgg
      961 gcctttcggg aacagacgat acagatagcg gctgttgcct ttttcttcgc cgaacttatt
     1021 cgccatcgct tttaccagca ttcggatggc gggagaggta ttaaactcca ggtaaaattc
     1081 gcgcacgaag cgcacgactt cccagtgttc cgcagagagc tcaatgcctt cattggcggc
     1141 gatagcgact gccagcgctt cactccactg cgtcgtctct ttcagatagc cttcgctatc
     1201 agtactgatt tctttacctt caaagatcaa cataacgttt cactgcgtaa tcaacacgga
     1261 cggcagtgta gcaaaaaata aagccctgca taagcagggc tggaagaggg gaatgtcgat
     1321 tagtcgcggc tggcgaagcc cagaatgctg agcaggctga caaagatgtt gtacagcgaa
     1381 acgtacagac tgacggtcgc acgaatatag ttggtttcac cgccgtgaat gatgttactg
     1441 gtttcataca ggatagcgcc cgaggaaatc aggataaaca ccgcgctaat cgccaggtgc
     1501 aatgcaggca gttgcaggaa aatattcgcc accataccaa tcagcacgac gacgatcccg
     1561 gccattagca taccgcccag gaaagacata tccttacggg tggtcagaac gtaagcggag
     1621 cagcagaaaa atactaacgc ggtaccaccc agcgccaggc caatcacatc gcccatgcct
     1681 gctgacagat aggcgttaag aatcgggccc aggatatagc cgaggaagcc ggtaaacgca
     1741 aaagcagaca ggataccgac cggcttattg gcggttttat aggtcaggaa catcagccca
     1801 tacataccga ccagcgtcag aatcaggccg ggggagggca gcatcagtac cgtactggct
     1861 gtcgcggtaa ttgcggagaa agccagcgtc aggctcaaca gaaaataggt gttgcgcagt
     1921 actttgtgcg tactcagtag cgagctacga tcacgcgatg atgtaatgat acgatccatt
     1981 agtcactctc ttatgacaga tgtaattaat aaaggagaat aataaaaaca gtcactgtca
     2041 cccagtggtt ttacccatct ttacgcattc gtttacgttt agtttcctta agagatttca
     2101 ggtgattacc gtcgttaaaa cggtctgctc atgcctggcg ctacgccata aaacaggcgg
     2161 cagcgccaac cacgcgttac cgataaaaaa ttgataatca cagaggtaaa acagtgggga
     2221 cgatcaacac gtattcagcc cgtttttgtg ttgaagaaat ggtcaatgtg ccgctatttc
     2281 aggcaattaa cgaaaatttg cctgtttttc acgcaaacga acacattcgg tctttacatg
     2341 acgcaccggg atgtttatag tgcgcctcat tctggaagtg tggccgagcg gttgaaggca
     2401 ccggtcttga aaaccggcga cccgaaaggg ttccagagtt cgaatctctg cgcttccgcc
     2461 agattaaaca aggggttacc gaaaggtaac cc
//
LOCUS       DAJVSD010000353         2457 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.354, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000353 DAJVSD010000000
VERSION     DAJVSD010000353.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2457)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2457)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2457
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.354"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            105..1736
                     /gene="dcuS"
                     /locus_tag="OQP62_004313"
     CDS             105..1736
                     /gene="dcuS"
                     /locus_tag="OQP62_004313"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DcuS"
                     /protein_id="HCS1723687.1"
                     /translation="MKHSLPCRALRKRPMKLGTTVILMVSAVLFSVLVVVHLIYFSQI
                     SSMTRDALADKALAVARSLADSPAIREGLKKPPAESGIQPLSEAVSQHNGFLFIVVTN
                     MQGIRYSHPETQRIGQPFKGDDILLALQGKENVAINRGFLAKALRVFTPVYDEHHRQI
                     GVVAIGLELSHVTQQINNSRGSIIWSILFGALVGLLGTYALVKVLKRILFGLEPYEIS
                     TLFEQRQAMLQSIKEGVIAVDGSGEVTLINHAAQALLDYRKTQDDARLSTLSHAWPQV
                     VDISEVLRDGTPRRDEEIIVKGRLLLVNTVPVRSNGEIIGAISTFRDKTEVRQLMQRL
                     DGMVNYADALRERSHEFMNKLHVILGLLHLKSYKQLEAYIIKTANNYQEEIGLLLGKI
                     KSPIIAGFLLSKITRASDFGHSLVISSDSQLPDNNNEDQVTVLITALGNLIENALEAL
                     SQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAERGVGLALVK
                     QQVEALGGVISVESEPGIFTQFFVQLPWDGKRTSL"
     gene            1733..2452
                     /gene="dcuR"
                     /locus_tag="OQP62_004314"
     CDS             1733..2452
                     /gene="dcuR"
                     /locus_tag="OQP62_004314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DcuR"
                     /protein_id="HCS1723688.1"
                     /translation="MINVLIVDDDAMVAELNRRYVAQISGFHCCGTASTLEKAKEFIF
                     NSENHIDLILLDIYMQQENGLDLLPVLHSAGCKSDVIVISSAADAATIKDSLHYGVVD
                     YLIKPFQATRFEEALTGWLRKKTAMEKRQYYEQSELDLLIHGNSSSEQEPRRLPKRLT
                     QQTLRTLCQWIDAHQEQEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTG
                     RPVYRYRVQPEHYSLLKQYCQ"
BASE COUNT          606 a          613 c          657 g          581 t
ORIGIN      
        1 aagactagac gggcttttca acactggagc aacatcgcct atgcctttga attagacgcc
       61 tcatcaggga taataacctt acgattcgtc cgctcaggtc cactatgaaa cactccctgc
      121 catgccgggc gttacgcaaa cgccccatga aactcggcac taccgtcatt ctgatggtca
      181 gcgccgtttt gttttcggtg ctcgttgtgg tccatctgat ctatttttcg caaatcagca
      241 gcatgacgcg cgacgcgctg gcagataaag cgctggcggt ggctcgctcg ctggcggact
      301 ctccggcaat tcgcgagggg ctgaaaaaac cgcctgcgga aagcggcatt cagccgctct
      361 ccgaagcggt gagccagcat aatggctttt tgtttattgt ggtgaccaat atgcagggca
      421 tccgttattc gcacccagaa acgcagcgaa tcggtcaacc gttcaaaggc gatgacattc
      481 tgctcgcact gcagggaaag gaaaacgttg ccattaatcg cggctttctt gccaaagcgc
      541 tgcgcgtttt cacaccggtt tatgatgaac accaccgaca gatcggcgtg gtagcgattg
      601 gcctggaact cagtcacgtt acgcagcaga tcaacaatag ccgcggcagt attatctggt
      661 ccattctgtt cggcgctctg gtgggattat taggcaccta tgcgctggtc aaggtgctaa
      721 aacgtatcct gtttggcctc gaaccctatg agatctcaac cctgtttgaa caacgccagg
      781 cgatgctgca gtcaatcaaa gagggcgtaa tcgccgtaga tggtagcggc gaagtcacgt
      841 tgattaacca cgcggcgcag gcgctgctcg attatcgaaa aacacaggat gacgccagat
      901 tatccaccct gagtcatgcc tggccgcagg tggtggacat tagcgaagtg ttgcgtgacg
      961 gtacgccgcg ccgcgatgaa gagattatcg tcaaaggccg cctgctgctg gtgaataccg
     1021 ttccggtgcg cagcaacggc gaaattatcg gcgcgatatc caccttcagg gataaaacag
     1081 aagttcgcca actgatgcag cggttagacg ggatggtgaa ctacgcggat gcgctccgtg
     1141 aacgatccca cgaattcatg aacaaattac atgtgattct gggattattg cacctgaaga
     1201 gttataagca gcttgaagcg tatattatca agacggccaa taactatcag gaagagatcg
     1261 gtttgctgct gggtaaaata aagtcgccga ttatcgctgg ctttttgctc agtaagatta
     1321 cccgcgcctc tgatttcggg cacagcctgg tgataagcag cgacagccag ttaccggata
     1381 ataacaatga agatcaggtt acggtgctga ttacggcgct gggtaatttg attgaaaacg
     1441 cgctggaagc gttgagccag gaatccggcg gcgaaatcag cgtctcgtta cactaccgtc
     1501 atggctggct gcattgcgaa gtgagcgatg acggtccggg tatcgaacct gagcgcatcg
     1561 aggcgatttt tgaaaaaggc gtctcgtcga aaggcgccga acgcggcgtc ggtttagcgc
     1621 tggttaaaca gcaggttgaa gcgcttggcg gcgtaatttc cgtggagtcc gagcctggga
     1681 tcttcacaca attttttgta cagttaccct gggatggaaa aaggaccagc ctatgatcaa
     1741 tgtattaatt gtcgatgacg atgcgatggt cgcggagtta aatcgccgct atgtcgcgca
     1801 aatctccggt tttcattgtt gtggaaccgc ttcgacgctg gaaaaagcga aagagtttat
     1861 cttcaacagt gaaaatcaca ttgacctaat cctgctggat atctatatgc agcaggaaaa
     1921 cggattggat ctgctgcctg tcctgcacag cgcaggctgc aaaagcgacg ttattgtcat
     1981 ttcttctgcc gctgacgccg ccaccattaa agattcgctt cactacggcg tggtggatta
     2041 tctgatcaag ccttttcagg ccacgcgctt tgaagaagcg ttgaccggct ggctacgtaa
     2101 gaaaacggcg atggaaaaac gccagtatta cgaacagtct gagcttgacc tgctcattca
     2161 cggtaattca tccagcgagc aggagcctcg tcggctgcca aaaaggctga cccagcaaac
     2221 gctacgcacc ttatgccagt ggattgatgc gcatcaggag caggaatttt ctaccgacga
     2281 gttagccaac gaagtgaata tctcgcgcgt ctcctgccgt aaatatctca tctggctggt
     2341 gaattgccat atcttgttta ccagtattca ttacggcgtg accggcaggc cggtttaccg
     2401 ctaccgcgtt cagccggaac attactcttt actgaaacaa tattgtcagt aaggata
//
LOCUS       DAJVSD010000354         2433 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.356, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000354 DAJVSD010000000
VERSION     DAJVSD010000354.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2433)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2433)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2433
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.356"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            70..2190
                     /locus_tag="OQP62_004315"
     CDS             70..2190
                     /locus_tag="OQP62_004315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCS1723689.1"
                     /translation="MKIISVRQRLYPALLLPLTFSPVLQAASAPNEQTMIVTATPQTV
                     SELDTPAAVSVIEGEDMRLATPRVNLSESLTSVPGLQVQNRQNYAQDLQISIRGFGSR
                     SAFGVRGIRLYVDGIPATMPDGQGQISNIDINSIQNVEVLRGPFSALYGNASGGVINV
                     TTETGRQPPTLEASSYYGSYGSWRYGLKATGAMGDGTQPGDVDYTVSTTRFTTHGYRD
                     HSGARKNLANAKLGVRLDDVSKLSLIFNSVDIKADDPGGLTESEWKADPQQAPRAEQY
                     NTRKTIKQTQAGLRYERQLSAQDDISVMAYAGERETTQYQSIPLVAQLKPAQAGGVIT
                     LQRHYQGIDSRWTHRGELGVPVTFTGGLNYENMSENRKGYNNFRLNNGTPEFGHKGDL
                     RRDERNLMWNVDPYLQTQWQLTQKLSLDAGVRYSSVWFDSNDHYIAPGNGDDSGDASY
                     HHWLPAGSLKYALTDAWNLYLAAGRGFETPTINELSYRADGQSGFNFDLKPSTNDTVE
                     VGSKTRIGNGLLTAALFQTDTDDEIVVASSMGGRTTYKNAGKTRRQGAELALDQRFAG
                     DWRVKASWTWLDATYRSNVCQGQNCDGNRMPGIARNMGFASLGFIPDEGWYAGTDVRY
                     MGDIMANDENTAKAPSYTVVGLNTGYKFNYSQLTVDIFGRVDNLFDEEYIGSVIVNES
                     NGRYYEPAPGRNYGVGINLAWQFE"
     gene            complement(2246..>2433)
                     /gene="mcbR"
                     /locus_tag="OQP62_004316"
     CDS             complement(2246..>2433)
                     /gene="mcbR"
                     /locus_tag="OQP62_004316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="colanic acid/biofilm transcriptional regulator
                     McbR"
                     /protein_id="HCS1723690.1"
                     /translation="RLGPSLHFLYDNFKLDDYQNGVNLYRKLLNALVTGDKEASRHCL
                     QNVLQQNVATIKNQYFM"
BASE COUNT          615 a          625 c          625 g          568 t
ORIGIN      
        1 aactttacat attgactacc cttaatgtca cgttttccgt tgatacgctt acatttatcc
       61 ggcattttca tgaaaattat ttccgttaga cagcgacttt atcccgccct cttattgcct
      121 ctgaccttct ccccggtcct tcaggccgcc agcgcgccca atgaacaaac catgatagtc
      181 accgcaacgc cgcaaaccgt atccgagctg gatacacctg ccgccgttag cgtcattgag
      241 ggagaagaca tgcgtctggc gacgccgcgc gttaatttat ctgagtcttt aaccagcgtc
      301 ccgggattgc aggtgcagaa ccggcagaac tacgcgcagg atctgcaaat ctctatccgt
      361 ggatttggct cgcgttccgc ctttggcgtg cgcggcattc gtctgtatgt tgatggcatt
      421 cccgccacca tgccggatgg acaaggccag atttcaaata ttgatattaa cagcatacaa
      481 aacgttgaag tgttacgcgg ccccttctca gcgctatacg gcaatgcttc cggcggcgtg
      541 ataaatgtca ccaccgaaac cgggagacag ccgcccaccc ttgaggccag cagctactac
      601 ggcagttatg gaagctggcg ctatgggtta aaagccacgg gcgcgatggg ggacggcaca
      661 cagcctggcg acgtggatta cacggtatcg actacccgtt tcaccaccca cggctaccgc
      721 gatcacagcg gcgcgcgaaa aaatctggct aatgccaaac tgggcgtgcg ccttgacgat
      781 gtcagtaaac tttcgctgat ttttaatagt gtggacatta aggcggacga tcccggcgga
      841 cttaccgaat ctgaatggaa agccgatccg cagcaggcgc cgcgcgctga acagtacaat
      901 acgcgtaaaa ccatcaaaca aactcaggca ggattgcgtt atgaacgtca gctcagcgcg
      961 caggatgata tcagcgtgat ggcctacgcc ggagagcggg aaaccacgca ataccagtct
     1021 attcccctgg tggcacagct aaaaccagcc caggctggcg gcgtaattac actgcaacgc
     1081 cactatcagg gaattgattc ccgctggact caccggggag aattaggtgt gccggtcacc
     1141 ttcactggcg ggttaaacta tgaaaacatg agcgaaaacc gcaagggtta caataatttc
     1201 cgtctcaaca acggcacccc tgagttcggg cataaaggcg atttacggcg ggatgagcgt
     1261 aacctgatgt ggaatgtcga tccttatctg caaacccagt ggcagcttac gcaaaaactc
     1321 tcgctggatg ctggcgtgcg ctacagttcc gtgtggttcg attctaacga tcactatatc
     1381 gcgcccggca atggcgatga cagcggcgac gccagctatc accactggct acccgccgga
     1441 tcgctaaaat atgcgttaac tgacgcctgg aatctctatc ttgctgccgg tcgcggattt
     1501 gaaactccca ctatcaatga actttcttat cgcgctgacg gccaaagcgg gttcaacttt
     1561 gacctcaaac cgtcgaccaa tgatacggtg gaagtcggca gtaaaacgcg gattggcaat
     1621 ggcttgttga ccgccgcgtt atttcaaacc gataccgatg atgaaattgt cgtcgccagt
     1681 agtatgggag gacgcactac ctacaaaaac gcgggcaaaa cgcgccgcca gggcgcagag
     1741 ctcgcgttgg accagcgctt cgccggcgac tggcgggtga aagcatcatg gacctggctg
     1801 gatgcgacct atcgcagtaa cgtttgtcag gggcaaaact gtgatggaaa ccggatgccc
     1861 ggcatcgccc gtaatatggg attcgcctca ttaggtttta tcccggatga ggggtggtac
     1921 gccggaacag acgttcggta tatgggcgat atcatggcca atgatgaaaa taccgccaaa
     1981 gcgccttcgt ataccgttgt tggactaaat acagggtata aatttaatta cagtcagctt
     2041 accgtcgata tttttgggcg ggtagataat ctatttgatg aagaatatat cggttcggtg
     2101 atcgttaatg aatctaatgg ccgatattat gagccagcgc cagggcgtaa ctatggcgtg
     2161 gggattaatc tggcatggca atttgaataa atatccggca atagcggggc atccccgcta
     2221 ttgattagtc atagtttcat gaaagttaca tgaagtactg atttttaatc gtcgctacgt
     2281 tttgttgcaa aacgttctgt aggcagtggc gactggcttc tttatcacca gtcactaacg
     2341 cattaagcaa ttttctgtac agattaacgc cgttttgata atcatcaagt ttaaaattat
     2401 catataaaaa atgcagactt ggccccaggc gta
//
LOCUS       DAJVSD010000355         2426 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.357, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000355 DAJVSD010000000
VERSION     DAJVSD010000355.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2426
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.357"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            70..1314
                     /gene="entS"
                     /locus_tag="OQP62_004317"
     CDS             70..1314
                     /gene="entS"
                     /locus_tag="OQP62_004317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin transporter EntS"
                     /protein_id="HCS1723691.1"
                     /translation="MNRQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQI
                     QMMTHSTWQVGLSVTLTGGAMFIGLMVGGVLADRYERKKVILLARGTCGIGFIGLCVN
                     ALLPEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSV
                     ISPMLGGILLASGGVAWNYGLAAAGTFITLLPLLTLPRLPVPPQPRENPFIALLAAFR
                     FLLASPLIGGIALLGGLVTMASAVRVLYPALAMSWQMSAAQIGLLYAAIPLGAAIGAL
                     TSGQLAHSVRPGLIMLVSTVGSFLAVGLFAIMPIWIAGVICLALFGWLSAISSLLQYT
                     LLQTQTPENMLGRMNGLWTAQNVTGDAIGAALLGGLGAMMTPVASASVSGFGLVIIGL
                     LLLLVLGELRRFRQTPPVSDAG"
     gene            complement(1377..2333)
                     /gene="fepB"
                     /locus_tag="OQP62_004318"
     CDS             complement(1377..2333)
                     /gene="fepB"
                     /locus_tag="OQP62_004318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+-enterobactin ABC transporter
                     substrate-binding protein"
                     /protein_id="HCS1723692.1"
                     /translation="MRLSAFYRWLLLVVGLSISGISLAQDAGWPRQIQDSRGVHTLDH
                     KPARIVSTSVTLTGSLLAIDAPVVASGATTPNNRFADDQGFMRQWSDVAKARHVARLY
                     IGEPNAETVAAQMPDLILISATGGDSALALYDQLSAIAPTLVINYDDKSWQSLLTQLG
                     EITGQEKQAAARIAEFEAQLTTVKQRIALPPQPVSALVYTPAAHSANLWTPESAQGKL
                     LTQLGFTLATLPQGLQTSKSQGKRHDIIQLGGENLAAGLNGESLFLFAGDNNDVAALY
                     ANPLLAHLPAVQNKRVYALGTETFRLDYYSATLLLNRLAALF"
BASE COUNT          459 a          637 c          739 g          591 t
ORIGIN      
        1 ttatttggtt atattagcat gtgcagccat tgaatggata tttaaaaaaa ctcgcattaa
       61 ggcgttgtaa tgaatcgaca atcctggctg ctcaatctca gcctgttgaa gacgcaccct
      121 gcatttcgcg cagtatttct ggcccgtttt atctctattg tctcgctggg gctgcttggc
      181 gtggcggttc cggtacagat ccaaatgatg acgcactcta cctggcaggt agggctgtcg
      241 gtaacgttaa ccggcggcgc catgtttatt ggcttaatgg tgggcggcgt actggccgat
      301 cgctacgaac gcaaaaaggt gattctgctg gcgcgcggta cttgcggtat tggctttatt
      361 ggtctgtgcg tgaacgcgct gctgccggaa ccgtcattgc tggcgatata tctccttggc
      421 ctgtgggacg gctttttcgc gtctctgggc gtgaccgcgt tactggcggc gacgccagcg
      481 ctggtcggaa gagaaaatct gatgcaggcc ggcgcgatta ccatgctgac ggtacgtctg
      541 ggatcggtta tttcgccgat gttggggggc atattgcttg ccagcggcgg cgtagcctgg
      601 aactatgggc tggcggccgc cgggacgttt attacgctat tgccgttact gacgctgccg
      661 cgactgcctg ttcctccgca gccgcgggaa aatccattta tcgcgttact ggcggcattt
      721 cgttttttgc tcgccagtcc gcttatcggc ggtattgcgc tgcttggcgg cctggtgacg
      781 atggcaagcg cggtacgcgt cctctatccg gcgctggcga tgagctggca gatgtcggcg
      841 gcgcaaatcg gtttgctgta tgcggcaatt ccgctggggg cggccattgg cgcgctgacc
      901 agcggacaac tggcgcatag cgttcgtccg gggctcatta tgctggtttc gacagtcggt
      961 tcttttctgg cggtggggct gttcgccatc atgccgatct ggatcgctgg tgttatctgt
     1021 ctggcgctat ttggctggct tagcgccatc agttcgttat tacaatacac tctgctgcaa
     1081 acccagacgc cggaaaatat gctggggcga atgaacggcc tgtggaccgc gcaaaacgtc
     1141 acgggagacg ctatcggcgc ggcgctgtta ggcggtcttg gcgcaatgat gacgccggtc
     1201 gcttccgcga gcgtgagtgg attcgggctg gtgattatcg gtttgctgct gctgttagtg
     1261 ctgggcgagc tacgccgttt tcgccagacg ccgccggtta gcgatgctgg ctgatgaaga
     1321 cgcgtttatc cgactgacca aatctgtctg gtcagtcgga taagactccg ataaggctaa
     1381 aacagggcgg ccagtcgatt aagcagcaac gttgcgctgt aataatccag acggaacgtc
     1441 tccgtaccca gggcatagac gcgcttattt tgcaccgctg gcaggtgcgc cagcagcgga
     1501 ttggcgtaaa gggccgcaac atcgttgttg tcgccggcaa acaggaaaag agattcgccg
     1561 tttaacccgg cggccagatt ttcaccgcca agctgaatga tatcgtggcg cttaccctgg
     1621 cttttgctgg tttgcagccc ttggggcaat gtcgccagcg taaagcctaa ctgcgtcaat
     1681 agcttgcctt gtgctgattc tggcgtccac agattggcgc tatgcgcggc aggagtatac
     1741 accagcgcgc taaccggctg cggcggcagg gcgattcgct gtttaaccgt cgtcagttgc
     1801 gcctcaaatt ccgctattcg cgcggcggcc tgtttctcct gaccggtgat ctcgccaagc
     1861 tgcgtgagca aactctgcca gcttttatcg tcataattga tgacgagtgt cggcgcgatg
     1921 gcggagagct gatcgtaaag cgccagcgcg gagtcgccgc cggtggcgct aatcaaaatg
     1981 agatccggca tttgcgcggc gaccgtttcg gcattcggtt cgccgatgta cagccgggcg
     2041 acatggcgag cctttgctac atcgctccac tggcgcataa acccttgatc gtcggcaaaa
     2101 cggttattcg gcgtagtggc tccgctggcg acgacgggcg catcaatcgc cagcagcgag
     2161 cctgttaacg tcacgctggt agagacgata cgcgcgggtt tgtggtccag agtatgaacg
     2221 cctcggctgt cctggatttg ccggggccaa ccggcgtcct gggctaagga tattcctgaa
     2281 attgataaac caaccactaa aagcagccaa cgataaaagg cggagagtct cacaatagcg
     2341 tcctgttatt aataaagtta atgcttctca ttttcatgtc agcggcagcg agatgcaagc
     2401 cttagtgcca tttaactcat gaccag
//
LOCUS       DAJVSD010000356         2372 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.358, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000356 DAJVSD010000000
VERSION     DAJVSD010000356.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.358"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..336
                     /locus_tag="OQP62_004319"
     CDS             <1..336
                     /locus_tag="OQP62_004319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1723693.1"
                     /translation="CLSFIIENAHLEIIERQKITTALWGSRSHYVNDANLTQILYLIR
                     RDLKALGINDLFITIPRQGLKVNSDIAIIATDSETKGRKKQIVRQTIAALTTVFSVTL
                     GSLMYLHIH"
     gene            353..886
                     /locus_tag="OQP62_004320"
     CDS             353..886
                     /locus_tag="OQP62_004320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HCS1723694.1"
                     /translation="MNPIIDGIIALEGGYVFNPKDKGGATHWGITEATARAHGYAGDM
                     RDLTHAEAYAILEEDYWIKPGFDVISTLSWPVSFELCDAAVNIGDYHPSAWLQRWLNV
                     FNHEGKRYPDVHVDGNIGPRTLAALEHYLAWRGQEGEAVLVKALNCSQGMYYLNVAEK
                     NHNNEQFIYGWIKNRVT"
     gene            complement(947..1291)
                     /locus_tag="OQP62_004321"
     CDS             complement(947..1291)
                     /locus_tag="OQP62_004321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HCS1723695.1"
                     /translation="MSIPNHVSTTEVVLLELEILLTIISIGAWGGFVSYLLRKDKTEY
                     NSSHESIKYCLTQIVISCFTSFLLSAIAIEKECSFNIVLLAAGLGGVFASPILKILGR
                     RIKKIIGGNNSD"
     gene            complement(1418..2365)
                     /locus_tag="OQP62_004322"
     CDS             complement(1418..2365)
                     /locus_tag="OQP62_004322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1723696.1"
                     /translation="MGSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSLA
                     LKRLQSYYPEELFSRGKGGLIPTAKAVDIHQNFSQVMKLVDDTFLCNSKKDEAFQITL
                     LGSDIVESYYLSQLYNSDIFDRILINHFSVRNMSREHISELLFTAQGDLLISAEPLLE
                     SGIENQIIDSFKSFVCICSSKHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSEL
                     FKDELYYTGRRIVGYRSDSLNGLMSMIERTSLIALMPLKLALFYKNHRKYDIKFIQPP
                     PELAFKSVQVYASWKKNSRNISTINEMVSMLQTLSSFRR"
BASE COUNT          733 a          519 c          498 g          622 t
ORIGIN      
        1 tgtctcagtt tcatcatcga gaatgctcat ctggagatta tcgagcgaca aaaaataacc
       61 actgcgttat ggggaagtcg aagccactat gttaatgatg caaatctaac gcagattctc
      121 tatttaatca gacgtgacct taaagcgctt ggtattaatg atctttttat taccattcca
      181 agacaaggtc tcaaagtgaa tagtgatatc gccattatcg cgacggatag cgaaacaaag
      241 ggaagaaaaa aacagattgt acggcaaacc atcgctgccc tgacgaccgt attttcagta
      301 acgttaggtt ctctcatgta tctgcatatt cactaagcga aggaaaggga agatgaatcc
      361 aattatagat ggaattattg cgcttgaagg cggttacgta tttaacccta aagataaagg
      421 cggcgccact cattggggca ttaccgaagc cacggcgcga gcgcatggct atgctggcga
      481 tatgcgggat ctgacccacg ctgaagccta cgcgattctc gaagaggatt actggataaa
      541 accaggcttt gatgtcatct cgacgctatc gtggccagtc tcattcgagc tgtgcgatgc
      601 ggcagtcaac ataggcgatt accaccccag cgcgtggctg caacgctggc tgaacgtctt
      661 taatcacgaa ggtaaacgct acccggatgt tcatgtggat ggcaatattg gcccgcggac
      721 gcttgccgct ctcgaacatt atttggcctg gcgaggccag gaaggggaag ccgttttggt
      781 gaaagccctc aattgcagtc agggcatgta ctacttaaac gttgctgaga aaaaccacaa
      841 taacgaacaa tttatttatg gctggatcaa gaacagagtg acctagacca ggctgaaaaa
      901 agacgcgtaa aaggctcacg gatgagcctg atattgcgaa tgacaattaa tctgaattat
      961 ttcctccgat aattttttta attcgccgcc caagaatttt taagatcgga ctcgcgaaaa
     1021 caccgcctaa gcctgccgcc aacaggacaa tattgaaact gcattctttt tcgatcgcaa
     1081 tcgcgcttaa caaaaagctg gtgaagcagg aaatcacgat ctgcgttaag caatatttaa
     1141 tactttcatg agaactatta tattctgtct tatctttgcg taaaagatag ctaacaaagc
     1201 ctccccacgc gccaatcgaa ataatagtga gtaagatctc tagctccaat agcacaactt
     1261 ccgttgtcga cacatggttg ggaatagaca ttttaacacc ccgaaatcat tataaatgaa
     1321 taattaacac aaggagtgta agcgccctgt cagaagggta aaaatcaaag cacatcattt
     1381 aaaaccatat taaatcaaag cgtaaaaatg aggtgtgtta gcgacggaag gaggaaagtg
     1441 tttgcaacat acttaccatc tcattaatcg tcgatatatt tctactattt ttcttccagg
     1501 atgcatagac ctgaactgac ttaaaggcca gttcgggcgg aggctgaata aatttaatgt
     1561 catatttacg atgattttta taaaaaagcg ctaatttcaa aggcatcaat gcaatcaatg
     1621 aggttcgttc gatcatgctc atcaaaccgt taagtgaatc actacgatag ccgacaatac
     1681 gcctgccagt atagtaaagc tcatccttaa ataactcgct atcatgatat atcactgaag
     1741 cccccatccc cggctgatat aacgcatgac gcgaagaata aaaatgatgt agcgacagtt
     1801 gcgagagggt actcagcatg tgtttactgc tacagataca aacaaatgat ttaaaactat
     1861 caatgatttg attctctatg ccggactcca gcaaaggttc ggcactaatc aacagatcgc
     1921 cttgcgcagt aaacagaagt tcgctgatat gctcccgact catatttctg acggagaaat
     1981 gatttatcaa aatacggtca aatatatcgc tgttatagag ctgagaaaga taatagcttt
     2041 caacaatatc actgcctaat aacgttatct ggaacgcttc atcttttttg ctattacaga
     2101 gaaatgtgtc atccaccagt ttcatcacct gactgaaatt ttggtgaatg tcgacagcct
     2161 tagcagtggg gatgagcccg cctttccctc tgctaaacag ttcttccggg taataactct
     2221 gcaggcgctt taacgccaga gaaacggcag ccggtgtaat gcctaacttt tttgccgcca
     2281 tagccgcatt tcctgacaaa ataacagcgt caagaatttt gattaaatta taatcaaagc
     2341 tcttgttggc acctttcgat cccattcgct gt
//
LOCUS       DAJVSD010000357         2367 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.359, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000357 DAJVSD010000000
VERSION     DAJVSD010000357.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2367
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.359"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..555
                     /gene="rfbN"
                     /locus_tag="OQP62_004323"
     CDS             <1..555
                     /gene="rfbN"
                     /locus_tag="OQP62_004323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O antigen biosynthesis rhamnosyltransferase
                     RfbN"
                     /protein_id="HCS1723697.1"
                     /translation="RNFNYSSKSIVKSKADIEKFGIKTVFMSNSFAAYRRSVFEELSG
                     FPEHTILAEDMFMAAKMIQAGYKVAYCAEAVVRHSHNYTPREEFQRYFDTGVFHACSP
                     WIQRDFGGAGGEGFRFVKSEIQFLLKNAPFWIPRALLTTFAKFLGYKLGKHWQSLPLS
                     TCRYFSMYKSYWNNIQYSSSKEIK"
     gene            556..1995
                     /locus_tag="OQP62_004324"
     CDS             556..1995
                     /locus_tag="OQP62_004324"
                     /EC_number="2.7.7.13"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate
                     guanylyltransferase/mannose-6-phosphate isomerase"
                     /protein_id="HCS1723698.1"
                     /translation="MSFLPVIMAGGTGSRLWPLSREYHPKQFLSVEGKLSMLQNTIKR
                     LASLSTEEPVVICNDRHRFLVAEQLREIDKLANNIILEPVGRNTAPAIALAAFCALQN
                     ADNADPLLLVLAADHVIQDEIAFTKAVRHAEEYAANGKLVTFGIVPTHAETGYGYIRR
                     GELIGNDAYAVAEFVEKPDIDTASDYFKSGKYYWNSGMFLFRASSYLNELKYLSPEIY
                     KACEKAVGHINPDLDFIRIDKEEFMSCPSDSIDYAVMEHTQHAVVIPMSAGWSDVGSW
                     SSLWDISNKDHQRNVLKGDIFAHACNDNYIYSEDMFISAIGVSNLVIVQTTDALLVAN
                     KDTVQDVKKIVDYLKRNDRNEYKQHQEVFRSWGKYNVIDSGKNYLVRCITVKPGEKFV
                     AQMHHHRAEHWIVLSGTARVTKGEQIYMVSENESTFIPPDTIHALENPGMIPLQLIEI
                     QSGTYLGEDDIIRLEQRSGFSKEWTNERS"
     gene            1982..>2367
                     /gene="rfbK"
                     /locus_tag="OQP62_004325"
     CDS             1982..>2367
                     /gene="rfbK"
                     /locus_tag="OQP62_004325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen biosynthesis phosphomannomutase RfbK"
                     /protein_id="HCS1723699.1"
                     /translation="MNVVNNSRDVIHSSGIVFGTSGARGLVKDFTPQVCAAFTVSFVA
                     VMQEHFSFDTVALAIDNRPSSYGMAQACAAALADKGVNCIFYGVVPTPALAFQSMSDN
                     MPAIMVTGSHIPFERNGLKFYRPDGE"
BASE COUNT          666 a          424 c          540 g          737 t
ORIGIN      
        1 aggaatttta attatagctc aaaatctatt gttaaaagca aggcagatat agaaaaattt
       61 ggtattaaaa ctgtatttat gtccaattct tttgctgcct atcgccgttc cgtttttgaa
      121 gagttaagtg ggtttcctga acatacaatt cttgccgagg atatgtttat ggcggctaag
      181 atgattcagg cgggttataa ggtcgcctac tgcgctgaag cggtggtaag gcactcccat
      241 aattataccc cgcgagaaga gtttcaacga tattttgata ctggtgtatt tcatgcttgt
      301 tctccgtgga ttcagcgtga ctttggcgga gccggaggag agggtttccg attcgtaaaa
      361 tcagagattc aattcctgct taaaaatgca ccgttctgga ttccaagagc tttattaacg
      421 acctttgcta aattcttggg ttacaaatta ggcaagcatt ggcaatcttt accgctgtct
      481 acatgtcgct attttagcat gtacaagagt tattggaata atatccaata ttcttcgtca
      541 aaagagataa aataaatgtc ttttcttccc gtaattatgg ctggcggcac aggtagccgt
      601 ttatggccgc tttcacgcga atatcatccg aagcagtttt taagcgttga aggtaaacta
      661 tcaatgctgc aaaatactat aaagcgatta gcttcacttt ctacagaaga acccgttgtc
      721 atttgcaatg acagacaccg tttcttagtc gctgaacaac tccgtgaaat tgacaagtta
      781 gcaaataata ttattctcga accagtaggc cgtaatactg caccagcgat cgctcttgcc
      841 gcgttttgtg cgctccagaa tgctgataat gctgatcctc ttttgttggt tcttgctgca
      901 gatcatgtga tccaggatga aatagcgttt acgaaagctg tcagacatgc tgaagaatac
      961 gccgcaaatg gtaagcttgt aacttttggt attgttccaa cgcatgctga aacgggttat
     1021 ggatatattc gtcgtggtga gttgatagga aatgacgctt atgcagtggc tgaatttgtg
     1081 gagaaaccgg atatcgatac cgccagtgac tatttcaaat cagggaaata ttactggaat
     1141 agcggtatgt ttttatttcg tgcaagctct tatttaaacg aattgaagta cttatcacct
     1201 gaaatttaca aagcttgtga aaaggcggta ggacatataa atcccgatct tgattttatt
     1261 cgtattgata aagaagagtt tatgtcatgc ccgagtgatt ctatcgatta tgcagttatg
     1321 gagcacacac agcatgccgt ggtgatacca atgagtgctg gctggtcgga tgtgggatcc
     1381 tggtcctcac tttgggatat atcgaataaa gatcatcaga gaaatgtttt aaaaggagat
     1441 atcttcgcac atgcttgtaa tgataattac atttattccg aagatatgtt tataagtgcg
     1501 attggtgtaa gcaatcttgt cattgttcaa acaacagacg ctttactggt ggctaataaa
     1561 gatacagtac aagatgttaa aaaaattgtc gattatttaa aacgaaatga taggaacgaa
     1621 tataaacaac atcaagaagt tttccgctct tggggaaaat ataatgtgat tgatagcggc
     1681 aaaaattacc tcgtccgatg tatcactgtt aagccgggtg agaaatttgt ggcgcagatg
     1741 catcaccacc gggctgagca ttggatagta ttatccggga ctgctcgtgt tacaaaggga
     1801 gagcagattt atatggtttc tgaaaatgaa tcaacattta ttcctccgga tactattcac
     1861 gcgctggaaa atcccggaat gatccccctg cagttaattg agattcaatc aggtacctat
     1921 cttggtgagg atgatattat tcgtttagaa caacgttctg gattttcgaa ggagtggact
     1981 aatgaacgta gttaataata gccgtgatgt tattcattca tcaggtattg tgtttggaac
     2041 gagtggggct cgcggtcttg taaaagattt tacacctcag gtatgtgctg cttttacggt
     2101 ttcatttgtt gccgttatgc aggaacattt ttcctttgat accgtagcat tggcaataga
     2161 taatcgtcca agtagttatg ggatggctca ggcgtgtgct gctgcattgg cagataaagg
     2221 cgttaactgt attttttatg gtgtggtacc aaccccggct ttggcctttc agtctatgtc
     2281 tgacaatatg cctgcgataa tggttacggg aagtcatatt ccattcgagc ggaacggcct
     2341 caagttttat cgtcctgatg gtgaaat
//
LOCUS       DAJVSD010000358         2232 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.361, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000358 DAJVSD010000000
VERSION     DAJVSD010000358.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2232)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2232)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.361"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..1917
                     /locus_tag="OQP62_004326"
     CDS             <1..1917
                     /locus_tag="OQP62_004326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta domain-containing
                     protein"
                     /protein_id="HCS1723700.1"
                     /translation="LPVIADSDNEIQSWIAGTASSISPHLQEGTLEDYAKGKIKALPG
                     QAANHLVNEGMKSAFPEIIFRGGVNLEDGAKYRSSEFDMFIPVQETTSSLLFGQLGFR
                     DHDSSSFDGRTYVNVGVGYRQEVNGWLLGVNTFLDADIRYSHLRGGIGGEVYKDSLAF
                     SGNYYFPLTGWKTSVVHELHDERPAYGFDLRTKGTLPDFPWFSGELAYEQYYGDKVDL
                     LGNGTLSRNPRAAGAALVWNPVPLLEVRAGYRDAGNGGSQAEGGLRVNYSFGTPLHEQ
                     LDYRNVGAPSNTTNRRAFVDRNYDIVMAYREQASKIRIMAMPVSGLSGTLVILMATVD
                     SRYPIEKVEWSGDAELLAGLQLQGSLGSGLILPQLPLTATDGQEYSLYLTVTDSRGTR
                     VTSERIPVRVTQDETSFRSWINVINDDVQVEDGNFVISTPLPAGEEGKVIEWHYVRER
                     SEEEWASLKPRHIKYQSDTPGLAFKALGGTERDGHWVERVLVTHIGDDARSLKLHIEA
                     SGPDDKHPVKGTVLLQAQSDSIAQKVTSVEVLFTQGTEEANGSVTAPVVGTEMRARTL
                     CVNNTDCTDAFNYQWEISDEMKSWQSVPGATKATWLLPYSLNGESLQNKYIRVRIISD
                     KGNAKGNTATSDAN"
     gene            1938..>2232
                     /locus_tag="OQP62_004327"
     CDS             1938..>2232
                     /locus_tag="OQP62_004327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723701.1"
                     /translation="MRMSKHNLIIYSLLLAAVPISVLADSSTTSAATVGMFSPPTAPS
                     VGHRPGTPRDTYELKFNGLDFSIEKYTPFPGMTIARDDRYLGISDPDNNYQSAE"
BASE COUNT          542 a          510 c          625 g          555 t
ORIGIN      
        1 ctgccggtca tcgctgatag cgataatgaa attcagtcat ggattgcagg gacggcatcg
       61 tctatttctc cgcatctgca ggaggggacg ctggaggatt atgccaaagg aaaaataaag
      121 gcattaccag ggcaagccgc taatcatctg gtgaacgagg ggatgaagag cgcttttccg
      181 gagattattt tccgtggtgg cgtcaatctt gaagatggcg cgaaatatcg ctcatcagag
      241 ttcgatatgt ttattcccgt ccaggaaaca acatcgtctt tactctttgg ccagcttggc
      301 tttcgcgacc acgacagcag cagtttcgat ggccgcacct atgttaacgt tggtgtgggt
      361 tatcgccagg aggtcaatgg atggctgctc ggcgtcaata cgtttctgga tgccgacatc
      421 cgttattccc acttgcgtgg cggcattggc ggggaagtct ataaagacag tctggccttt
      481 tccggcaact attatttccc tctcaccggc tggaaaacgt cagtagttca tgaattacat
      541 gatgagcgtc cggcatatgg ctttgatctg cgaacaaaag gcacgcttcc cgattttccc
      601 tggttcagtg gcgagctggc atatgaacag tattacgggg ataaagttga tctattgggt
      661 aacggtacat taagccggaa tccccgcgcc gcaggtgcgg ctctggtctg gaatcctgtc
      721 cccttgcttg aggtcagagc aggatatcgg gacgccggta acggcggatc gcaggcagag
      781 ggcggtctga gagtcaacta ttccttcggt acgccgttac atgaacagct tgattaccgc
      841 aacgttgggg cgccgtcgaa tacgactaat cggcgtgcct ttgtcgatcg taattacgat
      901 atcgtcatgg cgtatcggga gcaggccagt aaaatccgca ttatggcaat gccggtgtca
      961 ggcctgtccg ggacgctggt gatattaatg gcgacggtag atagccgtta cccgattgag
     1021 aaagttgagt ggtcgggtga tgcggaactt ctcgccggac ttcagcttca ggggagtttg
     1081 ggcagcggcc ttatccttcc tcaacttccg ctgacggcga ccgacggtca ggagtatagc
     1141 ctttatttaa cggtgactga cagccggggt actcgcgtga cctccgagcg tatcccggta
     1201 agggtgacac aggatgagac cagtttccgt tcctggataa atgttatcaa tgacgatgtt
     1261 caggttgagg acggcaactt tgttatcagt acgccgcttc ctgccggaga agaggggaag
     1321 gttattgagt ggcactacgt gcgcgagcgt tctgaagagg agtgggcgtc gctcaaacca
     1381 cgtcatatta agtatcaatc agatacgccg ggtctggcat ttaaagcgct cggtggtaca
     1441 gagcgtgacg gccattgggt tgaacgggtt ctggtgaccc atatcggcga tgatgcccgc
     1501 tcgctcaaat tacatattga agcaagcgga ccagacgata aacatccggt gaagggtacc
     1561 gtactactac aagcgcagtc agacagtatt gcgcagaagg tcacttctgt ggaggtgctt
     1621 tttacgcagg gtactgaaga agccaacgga agcgttactg cgccagtcgt cggaacagaa
     1681 atgcgagcca gaacgctttg tgtaaataac acggactgta ctgatgcgtt taattatcag
     1741 tgggaaatct cggatgaaat gaaatcctgg caatccgtac cgggggcgac aaaggccacc
     1801 tggcttcttc cttatagtct taatggggaa tcgcttcaga ataaatatat ccgcgtcaga
     1861 attatttctg ataagggaaa tgctaagggt aataccgcaa cctctgatgc gaattaatgt
     1921 tttaaaaagg atcaacagtg cgtatgtcga aacataatct tattatctat agcctgcttc
     1981 tggcggctgt gccgataagc gtcttggcgg attcgtcgac aacttccgcg gcaaccgtcg
     2041 ggatgttttc tcctcctacg gcgccgagcg ttgggcacag accaggaaca cctcgtgata
     2101 cctacgaatt gaagtttaat ggacttgact tttctattga aaagtataca ccttttccgg
     2161 gaatgactat tgcgagggat gatagatatc taggcatcag cgatccggat aataactatc
     2221 agtctgcgga aa
//
LOCUS       DAJVSD010000359         2216 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.362, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000359 DAJVSD010000000
VERSION     DAJVSD010000359.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2216)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2216)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2216
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.362"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            118..1155
                     /locus_tag="OQP62_004328"
     CDS             118..1155
                     /locus_tag="OQP62_004328"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA/rRNA methyltransferase"
                     /protein_id="HCS1723702.1"
                     /translation="MNDELKNKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPAKSRT
                     DGGRRPARDERNNQSRDRKHETSPWRTVSRAPGDETPEKVDHGGISGKSFIDPEVLRR
                     QRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA
                     ELAKASGTEHHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSC
                     AHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTS
                     SDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGV
                     LLAEWWRQNKA"
     gene            complement(1271..1960)
                     /gene="ung"
                     /locus_tag="OQP62_004329"
     CDS             complement(1271..1960)
                     /gene="ung"
                     /locus_tag="OQP62_004329"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HCS1723703.1"
                     /translation="MATELTWHDVLADEKQQPYFINTLHTVAGERQSGITVYPPQKDV
                     FNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAPPPSLVNMYKELEASIPG
                     FVRPAHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVV
                     FLLWGSHAQKKGAIIDPQRHHILKAPHPSPLSAHRGFFGCNHFALTNQWLEQHGEKTI
                     DWTPVLPAESE"
BASE COUNT          539 a          553 c          641 g          483 t
ORIGIN      
        1 acaacaatgt gttttattca atgagtacaa tagtcgcaag cttttaaacg aaatcatggc
       61 taaccggatg cacatcgggt aatcttcgcg cttcgcgcag cgctggtgga gaaaagcatg
      121 aacgatgaat taaaaaacaa aagcggcaaa gtcaaagtga tgtatgtccg tagtgatgat
      181 gactctgata aacgcaccca taacccgcgt accgggaaag ggggaggccg cccagcaaag
      241 tctcgcactg acggtggacg tcgccccgcc cgtgatgagc gaaataatca gagccgtgac
      301 cgtaaacatg aaacttcgcc gtggcgcacc gtgtcccgcg cgccaggcga tgaaacgcct
      361 gagaaagtcg atcatggtgg tattagcggt aaaagtttta tcgaccctga agttttgcgt
      421 cgccagcgtg cggaagagac gcgcgtctac ggcgaaaatg cctgccaggc gctattccag
      481 agccgtcctg acgccatcgt gcgcgcatgg tttatccaaa gcgtaacgcc gcgttttaaa
      541 gaggcgctgc gctggatggc ggcgaatcgt aaagcctacc atgtggtgga tgaagccgaa
      601 ctggcaaaag cttccgggac tgagcaccac ggcggcgtgt gtttcctgat taaaaagcgt
      661 aacggtacga ccgttaagca atgggtaaag caggcggcgg atcaagactg cgtgctggcg
      721 ttggaagatg tcgctaaccc gcataatctg ggcggcatga tgcgtagctg cgcgcacttc
      781 ggcgtgaagg gcgtggtggt acaggatgca gcgttgctgg agtccggcgc ggcgattcgt
      841 accgcggaag gcggggcgga acatgtccag ccaatcactg gtgaaagcat tgttgacgta
      901 ctggatgact ttcgtcaggc ggggtacacc gtggtgacga cgtccagcga tcgcggtcag
      961 gcgctcttta gtacgaccct gccggaaaag atggtgctgg tcttaggccg tgaatatgac
     1021 tacctgccgg aagcggcgcg cgaacccgac gatctgtgcg tgaaaattaa cggcaccggg
     1081 aacgtggaaa gcctgaatgt gtcggttgcg acaggcgtac tgctcgccga gtggtggcga
     1141 cagaataaag cgtaagggct gcagcccggt gacgcaacgc gcgccgggcc aatgatgtac
     1201 tttctaccgc ccggtcagac aaggcgcttt cgcgccgtta tccgggcgat aaaacggcga
     1261 gtcgccaacg ttattcactc tcagccggta atactggcgt ccagtcgata gttttctcgc
     1321 cgtgttgttc cagccattgg ttcgttagcg caaaatggtt acagccaaaa aatccgcggt
     1381 gcgcagagag tggcgaggga tgcggagctt tcagaatatg gtggcgctgt ggatcaataa
     1441 tcgcgccttt cttctgggcg tgcgagcccc acagcaggaa gacgacccct tcgcggtgtt
     1501 ggttaatcag gcttatcact ttatccgtaa aggtttccca ccccaggctg gcatgagagt
     1561 gcgcctggcc tgcccgtacc gtgagcaccg tattcagtaa cagtacgccc tggcgcgccc
     1621 agctttccag ataaccgtgc gcggggcgaa caaagccggg aatggaggct tccagctctt
     1681 tgtacatatt cactaatgac ggcgggggag cgatcccagg acgcacggaa aacgccagac
     1741 catgtgcctg gccggggccg tggtaaggat cttgtcccag gatcaccacc ttaacgtcgc
     1801 ccagttccgt gaagcgaaag gcgttaaata catctttttg cggcgggtag accgtgatac
     1861 ccgactgacg ctcgccagca acagtgtgaa gcgtattgat aaagtaaggt tgctgtttct
     1921 catcagccag cacatcgtgc caggttaact cagtcgccat ctcgctctcc tgcgaatttc
     1981 cagttccctt agcttaactg cttctttctg cagtgcaaaa tcctgcgtgc tacaaaaacg
     2041 gttacctaca aaagatagtt gaaaatttat gtaaaaagtt tataggtctg aatggtgtaa
     2101 gttgatgtaa aacaataaat tcccttcatc acccttttta tggtgtggtt tttattgatt
     2161 taaatcaaag aatgaagggt gatcgaaggg tatatataca ctcaagcaac aatggt
//
LOCUS       DAJVSD010000360         2214 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.363, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000360 DAJVSD010000000
VERSION     DAJVSD010000360.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2214)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2214)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.363"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(85..267)
                     /locus_tag="OQP62_004330"
     CDS             complement(85..267)
                     /locus_tag="OQP62_004330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1869 domain-containing protein"
                     /protein_id="HCS1723704.1"
                     /translation="MGKATYTVTVTNNSNGVSVDYETEAPMTLLVPEVTAEVVKDLVN
                     TVRSYDTENEHDVCGW"
     gene            complement(270..632)
                     /locus_tag="OQP62_004331"
     CDS             complement(270..632)
                     /locus_tag="OQP62_004331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1971 domain-containing protein"
                     /protein_id="HCS1723705.1"
                     /translation="MRQIPQNHIHTRSTPFWNKETAPAGIFERHLDKGTRPGVYPRLS
                     VMQGAVKYLGYADEHCSEPEEIMVINAGEFGVFPPEKWHNIEVMTDDTYFNIDFFVAP
                     EVLMEGATSRKVIHAGRE"
     gene            complement(805..1443)
                     /gene="leuE"
                     /locus_tag="OQP62_004332"
     CDS             complement(805..1443)
                     /gene="leuE"
                     /locus_tag="OQP62_004332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine efflux protein LeuE"
                     /protein_id="HCS1723706.1"
                     /translation="MFAEYGVLNYWTYLVGAIFIVLVPGPNTLFVLKNSVGRGVKGGY
                     LAACGVFIGDAILMFLAYAGVATLIKTTPVLFNIVRYLGAFYLLYLGAKILYATLTSK
                     GRAATETVVPFGAIFKRALILSLTNPKAILFYVSFFVQFIDVTAPHTGVSFFILATTL
                     EIVSFCYLSFLILSGAFVTHYIGTKKKLAKVGNSLIGLLFVGFAARLATLQS"
     gene            complement(1639..2184)
                     /locus_tag="OQP62_004333"
     CDS             complement(1639..2184)
                     /locus_tag="OQP62_004333"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HCS1723707.1"
                     /translation="MIRHIAIFLCSLLMCSTTFADSVTSVSLGALLTALNERMLLMKD
                     VAAYKMKHHLPIEDFTREQNVFAEAEEEAKNNGLDPHSITPFIRSLMDASKAIQYRYL
                     AQWRTGSEPSFPIQTLSVTRQRIRQLDNQMLIIISQRLMVGAFSHEDMVWLRTHFNAP
                     NLNESDISDVLAALSLVRHAR"
BASE COUNT          625 a          567 c          484 g          538 t
ORIGIN      
        1 gcaaaaaccg catcacgctg gcgacgcgcg atgcggcttc tcatttaaag aatcatttta
       61 tatcaaatag atactacagc atctttacca accgcaaacg tcgtgttcgt tttcggtatc
      121 gtaggaacgc acggtattga ccaaatcctt cacaacttct gctgtaactt caggtaccag
      181 caacgtcatc ggtgcttccg tttcatagtc cacagagacg ccgttgctat tattcgtgac
      241 cgtgacggta taagtagctt ttcccattat tattctctcc cggcatgaat gacttttcgt
      301 gaggtcgccc cttccatcag tacttccggc gcgacaaaaa agtcgatgtt aaaataggta
      361 tcatccgtca tgacctcaat attgtgccac ttttccggag gaaacacgcc aaactcgccg
      421 gcattgatca ccatgatctc ttccggctca gagcaatgtt catcagcgta tccgagatat
      481 ttgaccgccc cctgcatcac cgagaggcga ggataaacgc cgggtcgcgt tcccttatca
      541 aggtggcgtt cgaaaattcc ggcaggcgcc gtctctttgt tccagaaggg cgtggaacgt
      601 gtatggatat gattttgtgg aatttgccgc atttgcttcc ctcttcccgc aggttactca
      661 gcgataatct catcgctgtc gtaaaaaggt tacgctccaa aaacagcatt ttaaatacca
      721 tttattggtt actattttgc tgttttccac gcaataaaac cgaaaggaga gcaatgaccc
      781 gccgttcacg acgggtccag ggggttaaga ctggagcgtt gccagccggg cggcaaatcc
      841 gacgaaaaga aggccaatca acgaattgcc cacttttgcc agtttctttt tggtaccaat
      901 atagtgggtt acaaaagcgc cagaaagaat taaaaagctc agatagcaaa aactgacgat
      961 ttcaagggtg gtggccaaaa taaaaaatga caccccagta tgcggcgcag taacatcaat
     1021 aaattgcaca aaaaaggaaa cataaaaaag tatggcttta ggattcgtca ggctaagaat
     1081 taaagcacgc ttaaaaatag cgccaaaagg aactaccgtt tccgtcgccg cacgcccttt
     1141 tgaggtcaga gtggcgtaaa ggatttttgc gccaaggtag agcagataaa acgcgccgag
     1201 atagcgaaca atgttaaaca gaaccggcgt tgttttgatc agcgtcgcca cgcccgcata
     1261 cgccagaaac attaatatcg catcaccgat aaacacgcca catgcggcaa gatatcctcc
     1321 tttaaccccg cgtcccacgc tatttttaag cacaaaaagc gtattcggcc ctggtaccag
     1381 aacgataaaa atcgccccga ccaggtacgt ccaataattc agaacaccat actccgcgaa
     1441 cacattaacc tcttcctgaa aacatttacg cttagctgcg aaacagtatg ctaacgaatg
     1501 catcggaaga tgggaagcga aaccacgtct ctccagccgc tattccgcca cgcttatatc
     1561 cccatcaccc aaaaacgttc ttttatcgcg cccccgcagg caatcaccag gtattggccc
     1621 acgtttcctc atgggggatt aacgcgcgtg tcgcaccaaa gatagggctg ccaacacatc
     1681 actgatatcg ctctcattca gattcggcgc attaaagtgc gttctcagcc acaccatatc
     1741 ctcatggctg aaagcgccga ccatcaggcg ctggctgata atgatcaaca tttgattatc
     1801 aagttgtcga atacgttgcc gggtgaccga caaggtttgt atcggaaagg agggttctga
     1861 gccggttcgc cactgcgcta aatagcggta ctgtatcgct ttactggcat ccattagcga
     1921 acgaataaaa ggggttatcg aatgcgggtc cagaccgtta tttttcgctt cttcttcagc
     1981 ctcggcaaaa acattttgtt cacgtgtgaa atcctctatc ggcagatggt gcttcatttt
     2041 ataagcagcc acatctttca ttaataacat gcgttcattg agcgcggtta agagcgcgcc
     2101 aagcgatacc gacgttaccg aatcggcaaa agtggtgctg cacatcaata aagaacaaag
     2161 aaaaatggcg atatgacgaa tcattaatca acctcctttt acggaggtct gaca
//
LOCUS       DAJVSD010000361         2207 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.364, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000361 DAJVSD010000000
VERSION     DAJVSD010000361.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.364"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..774
                     /gene="nirC"
                     /locus_tag="OQP62_004334"
     CDS             <1..774
                     /gene="nirC"
                     /locus_tag="OQP62_004334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite transporter NirC"
                     /protein_id="HCS1723708.1"
                     /translation="AARIARLSANNPLGFWVSSAMAGAYVGLGIILIFTLGNLLDPSV
                     RPLVMGATFGIALTLVIIAGSELFTGHTMFLTLGVKAGTISHGQMWAILPQTWLGNLV
                     GSVFVALLYSWGGGSLLPVDTSIVHSVALAKTTAPATVLFFKGALCNWLVCLAIWMAI
                     RTEGTAKFLAIWWCLLAFIASGYEHSVANMTLFALSWFGHHSDAYTLSGIGHNLLWVT
                     LGNTLSGVVFMGLGYWYATPKSERPVPQKTNQIKATANH"
     gene            786..2159
                     /gene="cobA"
                     /locus_tag="OQP62_004335"
     CDS             786..2159
                     /gene="cobA"
                     /locus_tag="OQP62_004335"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HCS1723709.1"
                     /translation="MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT
                     FIPQFTVWVNEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRVSEAAESRRIFCNV
                     VDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESLLPQHLGQVARYAGQ
                     LRARVKKQFATMGERRRFWEKFFVNDRLAQSLANADEKAVNATTEHLFSEPLDHRGEV
                     VLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHC
                     VPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAAS
                     GCSAYSGIPLTHRDYAQSVRLVTGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQE
                     KLIAFGMEANMPVALVENGTSVKQRVVHGVLTQLGELAQQVESPALIIVGRVVALRDK
                     LNWFSNH"
BASE COUNT          444 a          615 c          637 g          511 t
ORIGIN      
        1 gctgcgcgca tcgcacgcct gtcggcgaat aatccgctcg gcttctgggt cagttcggca
       61 atggccgggg cttatgtcgg tctcggcatc attcttattt tcaccctcgg caatctgctc
      121 gacccgtccg tgcgtccttt ggtgatggga gccaccttcg gtatcgcctt aacgctggtc
      181 atcatcgccg gttccgaact gtttaccggc cacaccatgt tcctgacgct gggcgtcaaa
      241 gcgggcacca tcagccacgg tcaaatgtgg gctatcctgc cgcaaacctg gctcggcaac
      301 ctggttggtt ccgtgtttgt cgccctgctt tacagctggg gcggcggcag tttgttgccg
      361 gtcgatacca gtatcgttca ctcagtcgcg ctggcgaaaa ccaccgcgcc cgccacggta
      421 ctgttcttca aaggcgcgct gtgtaactgg ctggtttgtc tggcaatctg gatggcgatc
      481 cgcaccgaag gcacggcaaa atttcttgct atctggtggt gtctgctggc gtttatcgct
      541 tccggctacg agcactccgt cgcgaatatg acgctgttcg ccctctcctg gtttggccat
      601 cacagcgatg cctataccct gtccggaatc ggacacaatc tgttatgggt cactctgggc
      661 aatactttgt ccggcgtcgt gttcatggga ttgggttatt ggtatgctac gccgaaatcg
      721 gagcgccctg ttccgcaaaa aaccaaccaa attaaggcta cagccaacca ttaaggggta
      781 atgtcgtgga ccatttgcct atattttgtc aattgcgcga ccgcgactgt ctgatcgtcg
      841 gcggtggcga tgtcgcagaa cgcaaagcac ggttactgct ggaagcaggc gcacgtttaa
      901 cggtcaatgc gctaacattt attccgcagt tcaccgtatg ggtaaatgaa ggcatgttga
      961 ctctggttga ggggccgttc gacgaaacgc ttctcgactc gtgttggctg gcgatcgcgg
     1021 ccactgacga cgataccgtc aaccagcgcg tcagcgaagc ggcggaatca cgccgtatct
     1081 tctgcaacgt ggtggatgcg ccgaaagccg ccagctttat catgccctcc attatcgacc
     1141 gctcgccgct gatggtcgcc gtctcctccg gcggcacctc cccggtgctg gcgcgtctgc
     1201 tgcgcgagaa actggaatcg ctgctgccgc agcatctggg gcaggtcgcg cgctatgccg
     1261 gacagctccg cgcccgagtg aaaaagcagt ttgccaccat gggcgaacgt cgtcgcttct
     1321 gggaaaaatt tttcgtcaat gaccggctgg cgcagtcgct ggcgaatgcc gatgagaaag
     1381 cggttaacgc gacaactgaa cacctgttta gcgagccgct ggatcaccgt ggcgaagtcg
     1441 tgctggtcgg cgccgggccg ggcgatgccg ggctgcttac gctgaaagga ttacaacaaa
     1501 tccaacaggc ggatatcgtg gtttacgatc gcctcgtttc cgacgacatt atgaacctgg
     1561 tacgccgcga tgccgatcgg gtctttgtgg ggaaacgcgc gggttaccac tgcgtcccac
     1621 aggaggaaat caaccagatc ctgctgcgtg aagcgcaaaa aggtaaacgc gtggtacgcc
     1681 tgaaaggcgg cgatcccttt atctttggtc gcggcggcga agagctggaa acgctgtgtc
     1741 atgccggtat tcctttctca gtagtaccgg ggattaccgc ggcttccggc tgctccgcct
     1801 actccggtat tccgctaacc catcgcgatt acgcacagag cgtacgtctg gtcacgggtc
     1861 acctgaaaac cggcggcgag ctggactggg aaaacctggc ggcagaaaaa cagacgctgg
     1921 tgttctacat ggggctgaat caggcagcga ctatccagga aaaactgatc gcattcggta
     1981 tggaggccaa tatgccggtt gcgctggtgg aaaacggtac ctccgtaaag caacgcgtcg
     2041 ttcacggtgt gctgacgcag cttggtgaat tagcgcaaca ggttgaaagc ccggcgctga
     2101 ttatcgttgg tcgcgtggta gccttacgcg ataaattaaa ttggttctct aatcattaat
     2161 taaaataaag ccctgttatt cagggcttta ttttacaact actcgta
//
LOCUS       DAJVSD010000362         2181 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.365, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000362 DAJVSD010000000
VERSION     DAJVSD010000362.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2181)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2181)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.365"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..2157
                     /locus_tag="OQP62_004336"
     CDS             <1..2157
                     /locus_tag="OQP62_004336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HCS1723710.1"
                     /translation="SKKAGGLTVSHLRVSEKPIRSAYLIAQADFVGCHQLQFIDKYQM
                     AERLKPGGIFLLNTPYSADEVWSRLPQEVQAVLNQKKARFYVVNAAKIARECGLGARI
                     NTVMQMAFFHLTHILPGDSALVELQGAIAKSYSSKGQDLVERNWQALALAQESLAEVP
                     LQAVNPHSAHRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALPPDGTWPMGTTRWEK
                     RNIAEEIPVWKEELCTQCNHCVAACPHSAIRAKVVSPQAMENAPASLHSLDVKSRDMR
                     GQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPQIKAINMMSRLEHVEEEKVNYDFFLDL
                     PEIDRSKLERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRMLIANATGCS
                     SIYGGNLPSTPYTTDANGRGPAWTNSLFEDNAEFGLGFRLSVDQHRARVMRLLAQFAD
                     RIPAELNDALHAEATPDVRREQVAALRQHLKSVAGAEELLKDADALVEKSIWLIGGDG
                     WAYDIGFGGLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRKAR
                     KDLGVSMMMYGHVYVAQISLGAQLNQTVKAIQEAEAWPGPSLIIAYSPCEEHGYDLAL
                     SHDQMRQLTATGFWPLYRFDPRRADEGKPPLALDSRPPSDALAETLLNEQRFRRLNAQ
                     QPEVAEQLWRDAALDLQKRYDFLALLAGKAEKPSAD"
BASE COUNT          502 a          576 c          622 g          481 t
ORIGIN      
        1 tctaaaaaag ctggcggact cacggtatcg cacctgcgcg tcagcgaaaa acccattcgt
       61 tccgcttact taattgctca ggcggatttt gtcggctgcc atcaattaca gtttatcgat
      121 aaatatcaga tggcggagcg tctgaagcca ggcggtatct ttctgcttaa tacgccgtac
      181 agcgccgacg aggtctggtc gcgtctgccg caagaagttc aggcggtatt gaatcagaaa
      241 aaggcgcgtt tttacgtggt caacgcggcg aaaatcgccc gcgaatgtgg actgggcgcc
      301 cgcatcaata ccgtcatgca aatggcgttc ttccacctga cgcatattct tccgggcgat
      361 agcgctctgg ttgagctgca gggcgcgatt gccaaaagct atagcagcaa aggtcaggat
      421 ctggttgagc gtaactggca ggcattggct ctggcgcagg aatcgctggc ggaagtgccg
      481 ttgcaggcgg ttaatccaca cagcgcgcat cgcccgccgg tcgtctccga cgccgcgccg
      541 gatttcgtga aaaccgttac cgccgccatg ttggcgggcc tcggcgacgc actgcctgtt
      601 tccgcgctgc cgccggacgg aacatggcca atgggcacca cccgctggga aaaacgcaat
      661 atcgccgaag agattcctgt ctggaaagag gaactgtgta cacaatgtaa tcactgcgtc
      721 gccgcctgcc ctcactcggc gattcgtgcg aaagtcgttt ccccgcaggc gatggagaac
      781 gcgccagcca gtctgcattc gctggacgtg aagtcccgcg atatgcgcgg ccagaaatat
      841 gtgctgcagg tcgcgccgga agactgtact ggctgtaatt tatgcgtaga ggtctgcccg
      901 gctaaagatc ggcaaaatcc acagatcaag gcgattaaca tgatgtcgcg ccttgagcat
      961 gtggaagaag agaaagtgaa ttatgacttc ttcctcgact tgccggaaat cgatcgcagc
     1021 aaactggaac ggattgatat ccgcacatcg cagctcatta cgccgctgtt tgaatattcc
     1081 ggcgcctgtt ccggctgcgg tgaaacgccg tatattaaac tgctgactca gttatatggc
     1141 gacagaatgt taatcgctaa cgccacgggg tgttcctcta tttacggcgg taacttaccc
     1201 tctacgcctt ataccaccga tgccaacgga cgcggcccgg cgtggacgaa ttcgctattt
     1261 gaagataacg cggaatttgg cctcggtttc cgtctgagtg tggatcagca ccgggcgcgc
     1321 gtcatgcgtt tactggcgca attcgccgat cgcattccgg cggaattaaa cgatgcgctg
     1381 catgccgaag caacgcctga cgttcggcgt gaacaggtcg ccgcattacg ccaacatctg
     1441 aaatcggttg cgggcgcaga ggaactgtta aaagatgctg atgcgctggt agaaaaatca
     1501 atctggctga ttggcggcga tggttgggca tacgacatcg gctttggcgg tttagaccat
     1561 gtgttaagcc tgacggagaa tgtcaatatt ctggttctgg atacgcagtg ttattccaat
     1621 actggcggcc aggcgtcgaa ggcgacgccg cttggcgccg tcactaagtt tggcgaacat
     1681 ggcaagcgta aagcccgtaa agatcttggc gtcagcatga tgatgtatgg tcatgtttat
     1741 gtcgcgcaaa tttcgctggg cgcgcagtta aaccagacgg tgaaagccat ccaggaggcc
     1801 gaagcctggc caggaccgtc gctgatcatt gcctatagtc cctgtgagga acatggctac
     1861 gatctggcgc taagccatga ccagatgcgc cagttaacgg cgaccggttt ctggccgtta
     1921 taccgctttg atccccgccg tgcggatgaa ggcaagccgc cgctggcgct ggactctcgg
     1981 ccaccgtctg atgccctagc ggaaacgttg cttaatgaac agcgtttccg tcgcctgaat
     2041 gcgcaacagc ctgaagtagc tgaacaatta tggcgagatg ccgcattgga tttgcaaaaa
     2101 cgctatgact ttcttgcctt gctggcagga aaagcggaaa aacccagcgc agattaaaaa
     2161 acattctaag gattaacctg g
//
LOCUS       DAJVSD010000363         2178 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.366, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000363 DAJVSD010000000
VERSION     DAJVSD010000363.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2178)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2178)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2178
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.366"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            205..639
                     /gene="uspF"
                     /locus_tag="OQP62_004337"
     CDS             205..639
                     /gene="uspF"
                     /locus_tag="OQP62_004337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspF"
                     /protein_id="HCS1723711.1"
                     /translation="MNRTILVPIDISDSELTQRVISHVEAEAKIDDAKVHFLTVIPSL
                     PYYASLGLAYSAELPAMDDLKAEAKSQLEAIIKKFNLPADRVQAHVAEGSPKDKILEM
                     AKKLPADMVIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR"
     gene            complement(692..1030)
                     /locus_tag="OQP62_004338"
     CDS             complement(692..1030)
                     /locus_tag="OQP62_004338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HCS1723712.1"
                     /translation="MTKEAVIFLFIAIVVEVIATISLKLSDSFTRLVPSLVTIIGYCI
                     AFWCLTIPMRTIPAGIIYAIWSGVGIVLIGLIGWLFLGQKLDVPAIIGMLLIICGVIV
                     INLFSKSVSH"
     gene            complement(1305..2080)
                     /locus_tag="OQP62_004339"
                     /pseudo
     CDS             complement(1305..2080)
                     /locus_tag="OQP62_004339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010835222.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4765 family protein"
BASE COUNT          588 a          536 c          444 g          610 t
ORIGIN      
        1 ggtctttcct gacaaggcag aaataacgtt ttaacgtcaa ctcgctgatt atttacgggg
       61 aatgcgctta atattacgcc gtcctcccct gttggtagtc cccccagagt atcgtggagc
      121 agcacctaaa atgtgacgta tgtcattgta cataaagtgc ctttagggag tagaatttca
      181 gtggatactt aaacaggagg ttttatgaac agaacgattc ttgtacccat cgatatttca
      241 gattcagaat taactcaacg cgtgatttca catgttgaag ccgaagcaaa gattgacgac
      301 gctaaagtgc actttttgac tgtaatcccg tctttgccct attacgcttc actgggactg
      361 gcttattcag cagagctccc cgcaatggac gatttgaaag ccgaagccaa atctcaactg
      421 gaagcgatta tcaagaaatt caaccttccc gcggaccgcg tgcaggcgca cgtggcagaa
      481 ggctctccta aagataagat tctggaaatg gcaaaaaaat taccggccga tatggtgatt
      541 atcgcctcgc atcgtccgga tattactacc tatctgttgg gttccaacgc cgcagccgtt
      601 gtgcgtcatg cggaatgctc cgtactggtg gtgcgctaaa tacccgagcc cgcataagag
      661 agtgcgggct caaatcaacc atcatcatcg cctagtgact gacgcttttt gaaaacagat
      721 tgattacgat tacaccgcag atgataagca acatgccaat aatagccggc acatccaatt
      781 tttggccaag aaacagccat cctatcaatc caataagaac aatccctacc ccagaccaaa
      841 tggcataaat gatacccgca gggatggttc gcatagggat ggtaaggcac cagaacgcga
      901 tacaatatcc gatgatggta acgaggctcg gtaccagacg cgtaaaacta tccgataatt
      961 ttaatgagat cgtggcgata acttctacca cgatggcgat aaatagaaag attacagctt
     1021 ctttagtcat acatctcttc gttccgatat ttttctggtc gtggtgacat cttaattaat
     1081 acggatgaca gaataaagac gcttttgacc cgttgcgtat ctcgccataa cctacttcaa
     1141 gttgcatgtg ctgcagctgc gttcccttac cccagtcact tacttgagta agctcctggg
     1201 gattcgctcg cttgccgcct tcctgcaact cgaattaatt aaagtataaa agcaaccttt
     1261 catacacgag agataacaac aataaacctg ttcaggattt atgattactt agaagcgttt
     1321 gcctgccccg tattttctgc tttaccatat gtcctgtcaa ttataccaac agggtccact
     1381 ggtgtgtttt ttggcataac ccagccactt tcactgacac tacctcgtgt aagatatttg
     1441 acttttaccc taacgataat aagataatgt tccctgctga acctgtcggc aacactaaga
     1501 tcggtggtat attcaggtac gattcttcca cttcgaacct gctctttggc tatttcagca
     1561 gagacaggca atacctctac atcgccccct caataccgcc tgctgtttta aaactaacaa
     1621 tattttcagc ctgcggacct attgtacctc ggcataatac aacttcagtc tcccctgcta
     1681 cagcatcccc actctggtat ttcttataaa tactttgtac attttcttct gatgtagggt
     1741 ataaattttc tgacagagag gccagtatat cttccagtaa gggggaatca tccgtaatat
     1801 ccagaagctc ttcatcataa cccgtgtctc cttctcttaa ctctgaataa ggcttatcaa
     1861 tatggcgaat aagcccccca cctttcagcc ctgacgcctg ataaaatctt ccatcagaag
     1921 atcggtaaaa tgttatggct gaattttttc cgctatccga ataggttgcc tgatacgttt
     1981 ctgaaccggg ttctttagtt aaaacgagct ctctgtcgcc atattttatc gtattaggcg
     2041 cttccgatga cagcggtgga tatgaggctt gttttctgta gcgtccccct gccatagatg
     2101 taacgtgttc aaataggcca tctaacacct tacctgccag gttaggctcc gtagttgggg
     2161 caggatgatc ctccggga
//
LOCUS       DAJVSD010000364         2136 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.367, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000364 DAJVSD010000000
VERSION     DAJVSD010000364.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2136)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2136)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2136
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.367"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..104
                     /locus_tag="OQP62_004340"
     CDS             <1..104
                     /locus_tag="OQP62_004340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DinI-like family protein"
                     /protein_id="HCS1723713.1"
                     /translation="NLSVIGASKEDKERISEILQETWESADDWFINE"
     gene            394..648
                     /gene="bssS"
                     /locus_tag="OQP62_004341"
     CDS             394..648
                     /gene="bssS"
                     /locus_tag="OQP62_004341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460132.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator BssS"
                     /protein_id="HCS1723714.1"
                     /translation="MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNRPEPEGT
                     EVGQTLWLTTDVARQFISILEAGIAKIESGDYQENEYRHH"
     gene            761..1879
                     /gene="solA"
                     /locus_tag="OQP62_004342"
     CDS             761..1879
                     /gene="solA"
                     /locus_tag="OQP62_004342"
                     /EC_number="1.5.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-methyl-L-tryptophan oxidase"
                     /protein_id="HCS1723715.1"
                     /translation="MKYDLIIIGSGSVGAAAGYYATRAGLKVLMTDAHMPPYQQGSHH
                     GDTRLIRHAYGEGEKYVPLVLRAQTLWDELSTHNEEPIFVRSGVVNLGPADSAFLANV
                     ARSAQQWQLNVERLDATALMTRWPEIRVPDNYIGLFEADSGFLRSELAITTWLRLARE
                     AGCAQLFNSPVSHIHHDDNGVTIETSEGCYHASKALISAGTWVKTLVPELPVQPVRKV
                     FAWFKADGRYSTKNRFPAFTGEMPNGDHYYGFPAENDELKIGKHNGGQRIQAPEERKP
                     FAAVASDGAEAFPFLRNVLPGIGGCLHGAACTYDNSPDEDFIIDTLPGHENTLVITGL
                     SGHGFKFAPVLGEIAADFALGKTPSFDLTPFRLSRFSQ"
     gene            1920..2033
                     /locus_tag="OQP62_004343"
     CDS             1920..2033
                     /locus_tag="OQP62_004343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceO family protein"
                     /protein_id="HCS1723716.1"
                     /translation="MRRLFHFLMNNIREHFMLYVILWSLLAVMDIVYLLFF"
BASE COUNT          527 a          537 c          527 g          545 t
ORIGIN      
        1 acaacttgtc cgtcattggc gcgtcaaaag aggataaaga acgcattagc gagattctcc
       61 aggagacctg ggagagcgct gatgactggt tcatcaatga ataaaaaatg atatgcagtg
      121 atgtatgttt gccgggtcgc cccggctttt ttatttgcgc aactgatgaa tatttcgcct
      181 gaccgtcaaa ataattgcac aacatcctaa aaaaatatga atgaactgcc gctttattgt
      241 tcatataatt cttaaaaaga gaaatttatc ctccggtctc tttaaaaacg cagtgaatag
      301 ccttattaat tggtatactg aagttgcttc agaagaaaaa cacgcattga acctcgagaa
      361 ccgttgtctt ataacacgta ccaggggggc atgatggaaa agaataatga agtcattcag
      421 acccatccgc ttgtaggatg ggacatcagc accgtcgata gctatgatgc gctgatgctg
      481 cgtttacact accagacccc aaatcgtccg gaaccggaag ggactgaagt tggtcaaacg
      541 ctctggttaa cgacagatgt agccaggcaa tttatttcaa tattagaagc cggcatcgcc
      601 aaaatagaat caggcgatta ccaggaaaac gagtatcgtc accattagcg tgacgcgctc
      661 cccctctctc aggcaccgta aggtgcctca cttatttctg gcttgtatat ctcagcgcag
      721 ttatttacct tgaaatcatc gcgatagcag agagaagctg atgaaatacg accttattat
      781 tatcggcagc ggttcggttg gcgccgccgc tggttattac gccacccgcg ccgggctaaa
      841 ggtcctgatg accgatgcgc atatgccgcc ttatcaacag ggcagccacc acggcgatac
      901 ccgtcttatc cgccacgctt atggtgaagg cgaaaaatat gtcccgctgg tgcttcgcgc
      961 ccagacgctt tgggatgagc tctccacaca caatgaagag cctatttttg tccgctccgg
     1021 cgtcgtcaac ctcggcccgg ccgattccgc tttcttagcc aacgtcgcac gaagcgcgca
     1081 acagtggcaa ttgaacgtcg agcgcctgga cgcgacggcc ctcatgacgc gctggccgga
     1141 aattcgcgtg cccgataatt atatcgggct gtttgaagct gactccggtt tcctgcgcag
     1201 cgaattagcc attaccacat ggcttcgtct ggcccgagag gcaggctgcg cacagctatt
     1261 caacagcccg gtaagccata ttcaccatga tgataacggt gtgacgatag agacgagtga
     1321 aggctgctac cacgccagca aagcgctgat tagcgcgggc acctgggtca aaacgctggt
     1381 accggagctg cccgttcagc ccgtacgtaa agtttttgcc tggtttaagg cggatggacg
     1441 ttacagcact aaaaaccgct ttccggcctt taccggcgaa atgcccaacg gcgatcacta
     1501 ttacggtttc ccggcggaga acgacgagtt aaaaatcggc aaacacaatg gcgggcagcg
     1561 aatacaggca ccggaagagc gcaagccctt tgccgccgtt gccagcgatg gcgcggaagc
     1621 atttcctttc ctgcgtaacg tactgccggg tatcggcggt tgtttacatg gggcggcatg
     1681 tacctatgat aattcgccgg acgaggattt tattatcgat acgctgcctg gccatgagaa
     1741 tacgcttgtc atcactggac tcagcggaca tggttttaaa ttcgccccgg tgttaggaga
     1801 aatcgctgcg gattttgcgt tgggaaaaac gccctccttt gatctgacgc cgttccggct
     1861 ttcccgtttt agccaataat ttgtcggccc cgtaaagggg ctgtttatta aggtaagcta
     1921 tgcgtcgtct ctttcatttt ctgatgaata atattcgcga acatttcatg ctttacgtta
     1981 ttctttggtc gctgctggcg gtgatggata ttgtttatct ccttttcttc tgattgcttt
     2041 tcattgacgt taactaacac ttcctgaaag ttcctcactt tttatttcat aatgttgaag
     2101 cacggcaata atgccaactc ctgccgttgt gcggtt
//
LOCUS       DAJVSD010000365         2128 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.368, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000365 DAJVSD010000000
VERSION     DAJVSD010000365.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2128)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.368"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(69..749)
                     /locus_tag="OQP62_004344"
     CDS             complement(69..749)
                     /locus_tag="OQP62_004344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HCS1723717.1"
                     /translation="MIAGWSLFFNDLTEQLPLVVDGIKETCKLALIVSITGFLWGIII
                     FFLSLSHRPVVKAITRLYMDFFIGTPLILILFVIYYGLPQSGIHLSSFTVAVTGFTLN
                     VGAYNAAYMTTAYNALNKYETEAAVVQGLNKRQVFLWIILPQVLLSSIPALTNQVINN
                     LKDSTIVFLIQYTEFFARIQEVAATSFKFFHAYLFAAIVYLIGVTFIVGLTRFLEHRL
                     LRHYGQDY"
     gene            complement(746..1477)
                     /locus_tag="OQP62_004345"
     CDS             complement(746..1477)
                     /locus_tag="OQP62_004345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HCS1723718.1"
                     /translation="MALLELKEISKEYSGKKVLDAVSLKIQSGDMKVVMGPSGCGKTT
                     LLRCLLRLEEPDYGDIYFHGENIYDKEFTILEFRKKVGCVFQNYALYRHLNVMDNITL
                     ALCKVFGMPGQLAREKALHELQKLDMVSHSAKYPSQLSGGQQQRVALARTMVTDPELI
                     IFDEPTSALDPLMTREVGMLIKQLHDNGVTILCVTHDIRLARLLSDNVTFLNHGKIRA
                     EGAFTDLALRETDPDIHCFFSEAQR"
     gene            complement(1502..2125)
                     /locus_tag="OQP62_004346"
     CDS             complement(1502..2125)
                     /locus_tag="OQP62_004346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012768932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HCS1723719.1"
                     /translation="MFYFLLEGIGNTLLVTFTCFLSAFLTGLTVAVLRRLSPLPLQKI
                     LDVLVFILRGIPILIAVFLVYFGLPSIGIYVSPLVAMNLSVGLISGSYLAEVFRGALK
                     LVEPFEITVAKVAGMRQLQVIINIELPQMLRFSVPGIINEFSSVLKATPFAYTVGIAE
                     ITKQAMSLTAITLNGLQIYTLAGVLYFIIYKAFTLLAGVFEKKYRIS"
BASE COUNT          676 a          461 c          450 g          541 t
ORIGIN      
        1 aaccaacact aaataaaaat aactttgata atgtcagcgg tgaattaatc agaatagtgc
       61 agtacaactc agtaatcctg accgtaatgg cgaagcagtc tatgctctaa aaaccgggtc
      121 aaaccgacaa taaaggtaac gccaataagg tacactatgg cggcaaaaag gtaagcatgg
      181 aagaatttaa agctggttgc agcaacctcc tgaattcgcg cgaaaaactc agtatattgg
      241 ataagaaaaa cgatggtgct gtctttaagg ttattaatca cctgattcgt taaggctgga
      301 atggaagaca gcaatacctg aggcagtata atccacaaaa agacctgccg tttgttcaac
      361 ccctgaacga ctgctgcctc cgtttcatac ttattcaatg cgttataggc cgttgtcatg
      421 tacgcggcat tatatgcgcc gacattcaag gtaaaacctg taaccgccac ggtaaaagag
      481 gacaggtgaa tgccagattg aggtaaacca taatagataa caaacagaat aagaatgagt
      541 ggcgtaccga taaagaaatc catgtacagt cgagttatgg cttttaccac ggggcgatgg
      601 ctcaggctca gaaagaaaat aataattccc cacaaaaaac cggtgatgga aacaatcagc
      661 gcaagtttac aggtttcttt aataccgtcc acaacaagtg gcagttgttc agtcaggtca
      721 ttaaagaaaa gagaccagcc agcgatcatc gttgtgcctc gctaaaaaaa cagtggatat
      781 ctggatccgt ttctcgtaag gcaagatcgg taaaagcgcc ttctgcacga atcttgccat
      841 gattaagaaa cgttacgtta tcgcttagta atctggcgag gcgaatatca tgagtgacgc
      901 ataatatagt gacgccattg tcgtgaagtt gcttgatcaa cattccgact tcacgagtca
      961 tgagcggatc aagcgcagac gtcggctcat caaaaataat gagttctggg tcggtgacca
     1021 ttgtacgggc cagggcgacg cgctgttgct ggccacccga taattgcgaa gggtatttcg
     1081 cgctatgcga gaccatatca agtttttgta gctcatgtaa ggctttctcc cgggctagtt
     1141 gtcccggcat cccaaacact ttacataggg caagggtaat attatccatg acgttaagat
     1201 ggcgatacaa tgcgtaattc tggaagacac aaccaacttt ttttctgaac tcaagaatag
     1261 taaattcttt gtcgtaaata ttttccccgt gaaaataaat atcgccataa tcaggttctt
     1321 ctaatcgaag cagacagcgt aaaagcgtcg tttttccaca acccgatggc cccatgacta
     1381 ctttcatgtc tcccgattga attttcaaac taaccgcatc aagaaccttt tttcctgaat
     1441 attccttact tatctctttt agttccagta aagccatgag tatcacctct atttttatgt
     1501 ttcaactgat gcgatatttt ttctcaaaca ctccggccag aagagtaaat gctttataaa
     1561 taatgaaata taataccccg gcaagggtat agatctgtaa cccgttcagc gtgatggctg
     1621 tcagtgacat tgcctgcttc gttatttcag cgatgcctac agtataagca aagggcgtcg
     1681 cttttaatac agaagaaaac tcattgataa taccgggcac agaaaatcgc aacatctgtg
     1741 gcagttcaat atttattata acctgtaatt gacgcattcc tgctactttc gctaccgtta
     1801 tttcgaatgg ctcaactaat ttaagcgccc ctctgaacac ctcggcaaga taactcccgc
     1861 tgattaagcc gacgctgagg ttcatggcca ccagaggtga aacatatatg ccaatcgatg
     1921 gcaatccaaa ataaacaaga aaaacagcaa taagtattgg aattccccga agaataaaga
     1981 ccagtacgtc gagtatcttc tgtagtggaa ggggggatag tcgccgtaat acggcgactg
     2041 taagcccggt caaaaacgct gagagaaaac aggtaaaggt tacaagcagc gtattaccaa
     2101 tcccttccaa taggaaataa aagatagc
//
LOCUS       DAJVSD010000366         2096 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.369, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000366 DAJVSD010000000
VERSION     DAJVSD010000366.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.369"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..393
                     /gene="tnpA"
                     /locus_tag="OQP62_004347"
     CDS             <1..393
                     /gene="tnpA"
                     /locus_tag="OQP62_004347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HCS1723720.1"
                     /translation="KYRRQAFYGEKRRAVGSILRKLCEWKNVNILEAECCADHIHMLL
                     EIPPKMSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTAKIQD
                     YIKHQLEEDKMGEQLSIPYPSSPFTGRK"
     gene            complement(501..839)
                     /gene="maoP"
                     /locus_tag="OQP62_004348"
     CDS             complement(501..839)
                     /gene="maoP"
                     /locus_tag="OQP62_004348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ori organization protein MaoP"
                     /protein_id="HCS1723721.1"
                     /translation="MAESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGHAFND
                     LDLGKREPVTEEEKLFVAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVE
                     GAEDYTEADD"
     gene            946..1794
                     /gene="hdfR"
                     /locus_tag="OQP62_004349"
     CDS             946..1794
                     /gene="hdfR"
                     /locus_tag="OQP62_004349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462788.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator HdfR"
                     /protein_id="HCS1723722.1"
                     /translation="MESTVDTELLKTFLEVSRTRHFGRAAEALYLTQSAVSFRIRQLE
                     NQLGVNLFTRHRNNIRLTTAGEKLLPYAETLMNTWQAARKEVAHTSRHNEFSIGASAS
                     LWECMLNAWLGRLYQLQEPQSGLQFEARIAQRQSLVKQLHERQLDLLITTEAPKMDEF
                     SSQLLGHFTLALYCSSPARKKSELNYLRLEWGPDFQQHETGLIAADEVPVLTTSSAEL
                     ARQQLSALNGCSWLPVNWANEKGGLHTVADSATLSRPLYAIWLQNSDKYSLICDLLKT
                     DVLDEQ"
     gene            complement(1896..1971)
                     /locus_tag="OQP62_004350"
     tRNA            complement(1896..1971)
                     /locus_tag="OQP62_004350"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1936..1938),aa:Trp,seq:cca)
     gene            complement(1980..2056)
                     /locus_tag="OQP62_004351"
     tRNA            complement(1980..2056)
                     /locus_tag="OQP62_004351"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2020..2022),aa:Asp,seq:gtc)
BASE COUNT          589 a          489 c          529 g          489 t
ORIGIN      
        1 aaataccgaa gacaggcgtt ctacggagag aagcgtagag cggtaggcag cattttaagg
       61 aaactatgtg agtggaaaaa tgtgaacatt ctggaagcgg aatgctgtgc agatcatatc
      121 catatgcttc tggagatccc gccgaagatg agcgtgtcag ggtttatggg ttatctgaag
      181 ggaaaaagta gcctgatgct ttatgagcag tttggcgatt tgaaattcaa atacaggaac
      241 agggagttct ggtgcagagg gtactacgtc gatacggtgg gtaagaacac ggcgaagata
      301 caggattaca taaagcacca gcttgaagag gataaaatgg gtgagcagtt atcgatccct
      361 tatcctagca gcccgtttac gggccgtaag taacgaagtt tgatgcaaat gtcagatcgt
      421 atgcgcctgt tagggcgcgg ctggtaagag agccttacag gcgcatcaga aaaacctccg
      481 gctatgccgg aggatattta ttaatcatca gcttcggtgt agtcttctgc gccttcaact
      541 tgcggcttgc cgccagacaa ggtgtggaag cgttttggac gcttgatacg cgtcatatac
      601 ttggaccaga cgcgttctgc atccgttacc ggctcgcgtt caccgcgaca taccgctaca
      661 aacagcttct cttcttcagt cacaggctca cgcttgccaa gatccagatc attaaaggca
      721 tgaccatgac gctcaagcag ttgtgcctct ttaatcgtga aatcaccgtg acgagagaat
      781 ccacgtggat aatgtttatt gtcaaaatat cgattagtcg tcgtaaagct ttccgccatc
      841 ctgcacgctc ctaattcttt gtctgagcta tttatggcgc ggagtattag ttacgcttga
      901 cagagtgtaa aacaaaacat ttaaatcata acgacaaata attttgtgga gagcacagtg
      961 gatacggaat tgttaaaaac tttcctggaa gttagccgga cacgccattt cgggcgggcc
     1021 gcagaagcac tttacctgac gcaatccgcg gtgagctttc gtatcaggca actggagaat
     1081 caactgggcg taaacctttt tacgcggcac agaaacaata tccgtttaac cacggctggc
     1141 gaaaaacttt taccgtatgc ggaaacgctg atgaatacgt ggcaggcggc acgtaaagag
     1201 gtggcgcata cctcacgcca taacgagttt tccatcggcg ccagcgcgtc tttatgggag
     1261 tgtatgctta acgcctggct gggtcgactg taccaactac aggagccgca aagcggcctg
     1321 cagttcgaag ccagaatcgc tcaacggcaa tcgcttgtga agcaacttca tgaacgccag
     1381 cttgatctcc tcattactac cgaagcgccc aaaatggatg agttcagcag tcagctgtta
     1441 gggcacttca ctttggcgtt atattgcagc agccctgccc gtaagaaatc agaactcaat
     1501 tatctgcggc tggagtgggg accagacttc caacagcatg aaacagggct gatcgcagca
     1561 gatgaagtac cggtattaac aaccagctca gccgaactcg cccgacagca gcttagcgca
     1621 ttaaatggct gtagctggct tcctgtaaac tgggcaaatg aaaagggcgg attacatacc
     1681 gttgccgaca gcgcaacgct ttcacggccg ctatacgcca tttggctgca aaacagcgat
     1741 aaatactcgc tgatctgcga tctgttaaaa acggatgtgc tggatgaaca atgaaaatga
     1801 tgaaaagaaa aagaagggaa cttacgatta cctgatcaga taatcaggta atttcaggca
     1861 aaaaaaaatc cttagcagat gctaaggatt atttctggca ggggcggaga gactcgaact
     1921 cccaacaccc ggttttggag accggtgctc taccaattga actacgcccc taattagggt
     1981 ggcggaacgg acgggactcg aacccgcgac cccctgcgtg acaggcaggt attctaacca
     2041 actgaactac cgctccaccg aattctttta caaccactga tttttacatc aattta
//
LOCUS       DAJVSD010000367         2095 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.370, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000367 DAJVSD010000000
VERSION     DAJVSD010000367.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2095)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.370"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            200..1447
                     /locus_tag="OQP62_004352"
     CDS             200..1447
                     /locus_tag="OQP62_004352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001285496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase"
                     /protein_id="HCS1723723.1"
                     /translation="MSDNVIMQRNQIQKIRTGEDVLSAVTGRVEWIFDTFSQVCLSFS
                     GGKDSTVLFHIAATIARRKHRRFSVLFIDWEAQYQCTIEHVQKMKDLYSDVTETFFWV
                     ALPLTTVNGVSQFQPEWVCWEPDVEWVRQPPTDAITDTTYFPFYRYAMTFEEFVPAFS
                     TWFTGNQCGVAILTGVRADESLNRFIGLTSQRKLRYADDKPWTTASPEGFYYTMCPLY
                     DWKARDIWIYHARTGAIYNPLYDLMYRAGVPLRNMRVCEPFGPEQRRGLWLYHVLEPE
                     TWARMCARVSGAASGAIYANESGAYFALRKRISRPAHHTWRSYAMFLLDVMPQKTAEH
                     YRNKIAVYLRWYQTHGYPEDIPDEQENDLGSRDIPSWRRICKTLIKNDFWCRTLSFSP
                     NKPRHYERYLERMKQRRKEWGIL"
     gene            1432..2073
                     /locus_tag="OQP62_004353"
     CDS             1432..2073
                     /locus_tag="OQP62_004353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HCS1723724.1"
                     /translation="MGDIVTREQVASLITRYFSQQLSDDEKVAALNHFRLTLHELSPF
                     AREPVDLVLWVKASEVVANDYNPNVMAAGEKKLLQHSLQEDGFTQPVVVSEEKGQYLV
                     VDGFHRQLLGRRESGAGKRLKGWLPVTCINPERKGKAERIASTIRHNRARGKHQIASM
                     SDIVRDLARLGWADERIGKELGMDRDEVLRLKQISGLTELFEEEDFSPAWTVR"
BASE COUNT          517 a          493 c          565 g          520 t
ORIGIN      
        1 agtgtttgga atcatccttg tgcatatatt aagtggcata ctggaaactt tggtttccat
       61 tctttatatt cccgttttcg gggcacagat caaatataat taagaaagca cattttaata
      121 ttgtcatttc actaacaact gaactaatgc ttagcagggt aattattcaa catagcaggg
      181 agatggtttt cagacactca tgtcagataa cgtcattatg caacgtaatc aaatacagaa
      241 gatcagaacc ggggaggatg tgctgtctgc ggttacaggc cgtgtggagt ggatatttga
      301 taccttttct caggtttgtc tgtctttttc aggtggaaaa gactccaccg ttctgtttca
      361 tatcgccgcc acaatagccc gcaggaaaca ccggcgtttc tctgtccttt ttattgactg
      421 ggaagcccag tatcagtgca cgattgagca tgttcagaaa atgaaggatc tctacagtga
      481 tgtgacggag acgtttttct gggtggctct cccgctgacg acggtaaatg gtgtttcaca
      541 gtttcagcca gaatgggtct gctgggagcc cgatgtggag tgggtgcgtc agccgccgac
      601 agatgccatt actgatacga cgtattttcc tttttaccgt tacgccatga catttgaaga
      661 gtttgtcccg gcattttcga cttggttcac gggcaatcag tgtggagtgg ccatactgac
      721 tggcgttcgt gcagatgagt cccttaacag gtttataggc cttaccagcc agcgaaagct
      781 tcgttatgcc gatgacaaac cctggaccac cgcctctcct gaggggtttt attacacgat
      841 gtgtcctctg tatgactgga aagcccggga catctggatt taccatgccc gtacgggcgc
      901 catttacaac ccgctgtatg acctgatgta cagagccggc gtccccctgc ggaatatgcg
      961 ggtctgtgaa ccttttggcc ccgaacagcg ccgcggtctg tggctttatc atgtactgga
     1021 gcctgagacc tgggcgcgaa tgtgtgcccg cgtctccgga gcggccagcg gggccattta
     1081 tgctaatgaa agtggcgctt attttgccct gcgcaaacgc atctccagac cagcacatca
     1141 tacctggcgc agctatgcca tgtttcttct tgatgtcatg ccacaaaaaa cagccgagca
     1201 ttaccggaac aagatagcgg tatacctgcg ctggtatcag acgcacggtt atccggaaga
     1261 tattccggat gaacaggaga atgacctggg cagcagggat attccctcct ggcgtaggat
     1321 atgcaagaca ctgattaaaa atgacttctg gtgccggacc ttatctttca gtcctaataa
     1381 gccccggcat tacgaacgtt acctggagcg tatgaaacaa aggaggaagg aatgggggat
     1441 attgtaacca gggaacaggt ggccagtctc attacccggt atttcagtca gcagctttca
     1501 gatgacgaaa aagtggcagc cctcaatcat tttcgcctga cacttcatga gctcagcccc
     1561 tttgcccggg agcctgtgga cctggtgctg tgggtgaaag ccagcgaagt ggtggccaac
     1621 gattacaacc ccaatgttat ggctgccgga gagaaaaaat tgctgcagca ctcactgcag
     1681 gaggacggct ttacccagcc cgtcgttgta tctgaagaga aagggcagta cctggtcgtg
     1741 gatggttttc accggcagtt gctgggcaga cgcgagtcag gagcaggaaa acgcctgaaa
     1801 ggctggttgc ccgtcacctg tatcaatccc gaacgaaagg ggaaggctga acgaattgcc
     1861 tcgacgatca ggcataaccg cgcccgaggg aagcatcaga tagcgtcgat gtcagatatt
     1921 gtcagagacc ttgcccgtct cggatgggca gatgaacgta ttggcaagga gctgggaatg
     1981 gacagggatg aagttcttcg tctgaagcag ataagtggac tgacagaatt atttgaagaa
     2041 gaggacttca gtccggcctg gacggttcgc taaagtggac agcatcttat cgcaa
//
LOCUS       DAJVSD010000368         2094 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.371, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000368 DAJVSD010000000
VERSION     DAJVSD010000368.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2094)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.371"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..541
                     /locus_tag="OQP62_004354"
     CDS             <1..541
                     /locus_tag="OQP62_004354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1723725.1"
                     /translation="EIEKLLSATDRMPFPERNRCLILMAFIHGFRASELLGLRLSDID
                     LAGRQLYIRRLKNGFSTCHPLLPDEYNVLKSWLRARKYLEKGADGDWLFLSLRRHPLS
                     RQQFFYILREAGRLAELTIAPHPHMLRHACGYALADKGIDTRLIQDYLGHRNIQHTVR
                     YTASNAGRFHGIWRKKRRV"
     gene            719..1054
                     /locus_tag="OQP62_004355"
     CDS             719..1054
                     /locus_tag="OQP62_004355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723726.1"
                     /translation="MQPKSRTGQGVREQCLDGARRHFSYRHGMAPGPRKGADMLFPQH
                     EAAVAGAVPGRQWPEENNLMTQEYAEMSTGRGGTSKCRYSMGAKIFLLLLAVSTVAAL
                     FSLYQVLTY"
     gene            1056..1796
                     /locus_tag="OQP62_004356"
     CDS             1056..1796
                     /locus_tag="OQP62_004356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transport protein"
                     /protein_id="HCS1723727.1"
                     /translation="MQTLTRVLPPLRLIMFCQSGENPTQFPDTGGLCVEDCVRLRTPE
                     GLLDRLRRWPGAMVISAGRPSTQLLLWQQVFLRYPRTVVFCSSNAFLPVDVSVEGYFR
                     HLRLIKRAMSVRVLARMAELAIWSSLQTSPYEEEMKSALSVPELVMEINSRTLVRLLS
                     ERLPKQGRRVLGLLLSGCSPEMTARMLGTGVRQVWLAEQTLKQRWDIPTGVPLSDAVR
                     IRIPDVGPDISQQSGLVKTGAGNAPDLC"
BASE COUNT          527 a          483 c          586 g          498 t
ORIGIN      
        1 agagattgaa aaactgctgt cagcgaccga cagaatgccc ttcccggaaa gaaaccgctg
       61 cttaatcctg atggcgttta ttcacggctt ccgggccagt gagctgctgg ggctgcgctt
      121 gtcggatatt gatcttgcag gaagacagct ttatatccgg cgcctcaaaa atggcttttc
      181 aacgtgtcac cccctccttc ccgatgagta taacgtactg aaaagctggc tcagggccag
      241 gaagtatctt gagaaagggg ctgacggaga ctggctgttc ctgtcgctac gacggcatcc
      301 gctcagcagg caacaatttt tttacatact tcgtgaggca gggcggttgg ccgaattaac
      361 gatagcgcca catcctcata tgctgcgaca tgcctgcggc tacgcccttg ctgataaagg
      421 gattgataca cgactcatac aggactatct ggggcacagg aatatccagc acaccgtaag
      481 atacaccgca agtaacgccg ggcgttttca tggaatatgg cgaaaaaaac gtcgagtata
      541 accgtacgtt ctgattcata ttgttaaatc acagagaagt ctgttcaggg aaagctgatt
      601 tacataatca acatataaat caatagatta ctgtattttc tatttgtcat tttgtactcc
      661 gcacagggca gaattaccct acggcaggag catgtactac cagggggact gacggcctgt
      721 gcagccgaaa agcagaaccg gacagggtgt cagagagcag tgtttagatg gggccagacg
      781 tcatttttca tacagacatg gaatggctcc cggtccacga aagggtgcgg acatgttgtt
      841 tccacaacac gaagctgccg ttgctggcgc agtgccgggt cggcaatggc cagaggagaa
      901 caatctgatg acgcaagaat atgcggaaat gtccaccgga agggggggga ccagtaagtg
      961 ccggtacagt atgggcgcaa aaatattttt gctcctgctg gcggtctcca ctgtcgcagc
     1021 gttgttcagc ctgtaccagg ttctgacgta ctgatatgca gacgttaacc agagtactgc
     1081 cgcctctccg gctgattatg ttttgtcagt caggcgaaaa tcctacgcag tttccggata
     1141 ccggcggcct ttgcgtggag gactgcgttc gtctcaggac accagaaggg ctgctggatc
     1201 ggttgcgtcg gtggcccggc gcgatggtga tatccgccgg acggccatca acccagcttc
     1261 tgctgtggca acaggttttt ctgcgttatc cgcggacagt ggttttttgc agcagtaacg
     1321 cgtttttacc ggttgacgtc agcgtggaag gttacttccg ccatctgagg ctgattaaac
     1381 gcgccatgtc ggtaagggtt ctggccagaa tggctgagct tgccatatgg tcatcactac
     1441 agacatcgcc ttacgaggag gagatgaaaa gcgcgttgag cgtgccggag ctggtgatgg
     1501 agataaacag ccgcacgctg gtcaggttac tgtcagagcg tctgccaaaa cagggacggc
     1561 gggtgctggg attactgttg tcaggctgta gcccggaaat gacggcccgt atgctgggaa
     1621 ccggcgtgag gcaggtctgg ctcgcggagc agacgctgaa acaacgctgg gatatcccga
     1681 caggagtacc gctatctgat gcggtaagaa taaggatacc ggacgtcggt ccggacatca
     1741 gtcaacagag tgggttggta aaaactgggg ccggtaacgc accggattta tgctgacagc
     1801 atatttacat catgccgcgc ggtattcaga cccataatgt tgcgttctga atgagttatc
     1861 ttcacaaaat aaatatggca atcatcgttg tccggaaata ccgcataacg tgtaacatta
     1921 atgaatctgt aatcagtgcg agggtttacg cgctgtggcg gtagcgtgga attatctgga
     1981 tgcgttgagt aaatttcact ttactcttct gatataaatg aaaatggttc tggataaact
     2041 atctaatatt atctgtgtct gcgaacagag tgacaaaaat aatgcaacgt aaaa
//
LOCUS       DAJVSD010000369         2017 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.372, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000369 DAJVSD010000000
VERSION     DAJVSD010000369.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2017)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2017)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2017
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.372"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..606)
                     /locus_tag="OQP62_004357"
     CDS             complement(<1..606)
                     /locus_tag="OQP62_004357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine/pyrimidine permease"
                     /protein_id="HCS1723728.1"
                     /translation="MFPVINRESVLSGFQWFFFIFCNTVVVPPTLLSAFHLPADNLLM
                     LTQYAFLTTALACLVQAFCGHRRAIMEGPTGLWWGAILTITLGEASRGTPLNDIASSL
                     SVGIAISAMVTIFIGISGLGHRLARLFTPAVMVFFMLLLGAQLTSIFFKGMLGLPFGI
                     ADTSARIKLAPFGLAVAVMCFILAMIIFLQQRISRYALLVGT"
     gene            complement(665..>2017)
                     /gene="allB"
                     /locus_tag="OQP62_004358"
     CDS             complement(665..>2017)
                     /gene="allB"
                     /locus_tag="OQP62_004358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="allantoinase AllB"
                     /protein_id="HCS1723729.1"
                     /translation="DLIIKNGTVILENEARVIDIAVQGGKIAAIGENLGEAKNVLDAT
                     GLIVSPGMVDAHTHISEPGRTHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRETI
                     ELKFDAAKGKLTIDAAQLGGLVSYNLDRLHELDEVGVVGFKCFVATCGDRGIDNDFRD
                     VNDWQFYKGAQKLGEMDQTVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEV
                     EAIRRVLYLAKAAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFE
                     EIGTLAKCSPPIRDQENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMQAWGGIAG
                     LQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLKHKGRIAPGKDADLVFIQPDS
                     SYVLKNEDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEHGFPVPPKGQFILKHQQ
                     "
BASE COUNT          515 a          569 c          485 g          448 t
ORIGIN      
        1 ggtccctacc agtaacgcgt aacgggagat acgctgctgc aagaaaataa tcatcgcgag
       61 gataaaacac atcaccgcga ccgccagccc aaagggggcc aatttgattc tggcgctggt
      121 atcggcaatg ccaaaaggca gccccagcat gcctttaaaa aatattgagg tcagctgcgc
      181 gcccaaaagc agcatgaaaa aaaccattac cgccggcgta aacaggcgag ccagacggtg
      241 tcctaagccg ctaatgccga taaatatcgt caccatcgcg gagatcgcga tcccgaccga
      301 caggctggag gcgatatcgt tcagcggcgt gccgcgagac gcctcgccaa gcgtaatcgt
      361 aagtatagcg ccccaccaca accctgtcgg cccttccata atggcgcggc gatggccgca
      421 aaatgcctga accaggcagg ccaacgcggt ggtcagaaaa gcgtattgtg tgagcattaa
      481 caggttatca gcgggaagat gaaaagcgga cagcaaggta gggggaacca caaccgtgtt
      541 acagaaaata aagaaaaacc actgaaagcc ggacaataca ctttcgcggt taataacagg
      601 gaacatatcc acaccttaaa atagagaatg cccgtcgtga cgacgggcat taaatcacac
      661 cggattactg ctgatgttta aggataaact gaccttttgg cggcacaggg aagccatgct
      721 cgatgtcata aataacatcg ccgcgcaaaa tcgttttggt aatacgcgcg ccaatagtac
      781 ggccaacata cggactgact ttatggcgat attccagatc ttcatttttc agaacatagc
      841 tgctgtcagg ctgaataaag accaggtcag catctttgcc gggggcaata cgtcctttat
      901 gtttcagacc aaaaatatcg gcggcgttgg tcgccattaa tttgccaaac atcggcaacg
      961 acataccgcg tttttgcacc gcttcatcaa acatgacgtc catgcagttt tgcagtccgg
     1021 caattccacc ccatgcttgc atgatattgc ctgctttcat ttccggagga catggagagt
     1081 ggtcggatac caggcagtcg atttcgccgt taaacagttt ttcccacatc cctttctggt
     1141 tttcctggtc gcgaattggc ggagaacatt ttgccagggt gccaatctct tcgaactgat
     1201 cggtatcgag gacaaaatag tgcgggcacg attcacaggt gacatcctgg ccttcctgac
     1261 gcgcacgcgt tacttcctct accccctccg ggctgctgat atgacaaacg tgcagacggc
     1321 aacctgccgc tttcgccaga tacagcacgc gacgaatggc ttccacttca gtaaataccg
     1381 gacgtgaggc gacataatca tgcgccgtta cgcgaccttc gcgtttagct tcttcgccca
     1441 gctcatcgca aatcagagca ttttcgcaat gtaccagtac cgtctggtcc atctctccca
     1501 gtttttgcgc gcctttgtaa aactgccagt cattaacgtc gcgaaaatca ttatcgatgc
     1561 cacgatcgcc gcaggtggcg acaaagcact tgaagccgac aacgcccact tcgtccagct
     1621 catgcagccg atccaggtta taagagacca aaccgcccaa ctgcgcggcg tcgatggtca
     1681 atttaccttt tgccgcgtca aacttgagtt caatcgtctc acgatcgacc gtcgccggca
     1741 gctgattgag cggcatctca atcatcgtgg taataccgcc tttcgccgcc gcgcgcgtac
     1801 cggtttcata gccttcccag tgggtacggc ccggttcaga aatgtgggta tgcgcgtcaa
     1861 ccatgcccgg cgaaacgatc aatcccgtcg catccagcac gtttttcgct tcccccaggt
     1921 tctcgccaat cgcggcgatt tttccgccct ggacggcgat atcgataact ctcgcttcgt
     1981 tttctaagat gacagtaccg ttcttaataa ttaaatc
//
LOCUS       DAJVSD010000370         2008 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.373, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000370 DAJVSD010000000
VERSION     DAJVSD010000370.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2008)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2008)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.373"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            1..505
                     /locus_tag="OQP62_004359"
                     /pseudo
     CDS             1..505
                     /locus_tag="OQP62_004359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461188.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="acyloxyacyl hydrolase"
     gene            complement(697..900)
                     /locus_tag="OQP62_004360"
     CDS             complement(697..900)
                     /locus_tag="OQP62_004360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence protein MsgA"
                     /protein_id="HCS1723730.1"
                     /translation="MPTIKKLADARDVILHELILHELIGHLSCAVVTVKSMQATNVNH
                     VCTKTEKAHLHPILEKMFAVAGK"
     gene            complement(929..1087)
                     /locus_tag="OQP62_004361"
     CDS             complement(929..1087)
                     /locus_tag="OQP62_004361"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723731.1"
                     /translation="MDAYDADDEAAAAVLAVSADAALADASPAFVVAVPALLSADAAD
                     EAADQNSP"
     gene            1203..1994
                     /locus_tag="OQP62_004362"
     CDS             1203..1994
                     /locus_tag="OQP62_004362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HCS1723732.1"
                     /translation="MISLEDASLTKKGIVKLSSATDSDSEALAATPKAVKTVMGEVRT
                     KAPLDSPAFTGTPTTPTPPGDAKGLQTTNAEFVRKLIAALVGSVLEPLDTLQELADAL
                     GNDPNFATTVLNKLAGKQPLDETLTALSGKSVDGLIEYVGLRETISRAADALQKSQNG
                     GDIPDKDLFVRRIGAARAFDGAVIIGCDDNPWTTAEFIVWLESQGAFNHPYWMCRGSW
                     SYAYNKIITDTGCGNICLAGAVIEVMGVRGAMTIRVTTSHSVSGW"
BASE COUNT          516 a          447 c          549 g          496 t
ORIGIN      
        1 ctaatgataa tgtttttttg gcaagggcaa caagcatcag atctcttttg ctgcgggaga
       61 aagtataaga agaggagggg ttgagcactt atatacggct tttctgacat acagtgaacc
      121 cagcgatttt ttctttttac aggcaagaaa taatctggag ttaggaggat ttaaggctaa
      181 gggtagcgat gattgcagta aacattctgg cagcgttccc tgtaataaat ataaccaggg
      241 cgtattgggt atctcgaagg atgtggcgct ggttcatttc gctggtatct ataccggtat
      301 tggtctgggg gcttatataa aatctaagtc gcgagatgat atgcgtgtca attctgcatt
      361 tacctttgga gaaaaagcgt ttcttggctg gaactttggg gctttttcta cagaagctta
      421 tatccggcat ttctcgaatg gatcacttac ggataaaaat tcagggcata attttgtagg
      481 tgcttcaatt agttataatt tctgaagttg aataacaatt agcgagttgc tggctgaagg
      541 agtaattaat caccgtacgt tgtctacaaa acgtgttgtg aatagccgat cgttatcgac
      601 cctatggcga cagggaggct aattgttagc gacaaaggcg tggtaggccg tttaccttac
      661 cagaacgttt tattattgct gcgacagatt gcttactcat ttacctgcca ctgcaaacat
      721 tttttccagt atagggtgta gatgcgcttt ttctgtttta gtacaaacat ggtttacgtt
      781 agttgcctgc attgacttta ctgtgaccac tgcacaggaa agatgtccaa tcagttcatg
      841 caaaatcagt tcatgcaaaa taacgtctct ggcatcagct aactttttaa ttgtaggcat
      901 aaaaaaacca gccctgacag gctggttttc aaggggaatt ttggtcggca gcttcatccg
      961 cagcatctgc ggagagcagc gcaggtacgg cgaccacaaa agccggggag gcatcagcca
     1021 gcgcggcgtc ggctgacaca gccagaacgg cggcagccgc ctcgtcatca gcatcgtagg
     1081 catccaccca cgccgccgca tctgatacca gcgcatcact ggcagcgcaa agcagagctg
     1141 cagccggaga atcggcaacc agagccgaag aggccgcgaa acgggccgag gatatcgcag
     1201 acgtgatttc cctggaagat gcaagcctga cgaaaaaagg tatcgttaaa ttaagcagtg
     1261 ccacggacag tgacagcgaa gcgctggcgg ccacaccaaa ggcggtaaaa accgttatgg
     1321 gtgaggtacg gaccaaagcg ccgctggaca gcccggcatt cactggaacg ccgaccacac
     1381 cgacgccgcc aggcgatgct aaagggcttc agacaacaaa cgcggagttt gtccgcaaac
     1441 tgattgccgc gctggttggt tccgtactgg agccactgga caccctgcag gaactggctg
     1501 acgcgttggg aaatgatccg aactttgcca ccacggtact gaataaactg gcgggcaagc
     1561 agccgctgga cgaaaccctg acggcgctgt caggaaaaag cgttgacggt cttatcgaat
     1621 acgttggttt gcgagaaacc ataagtcgtg ccgccgatgc attacaaaaa tcacagaatg
     1681 gcggcgatat tccggacaag gatttgtttg tgcgtcgtat cggtgccgcg cgagcgtttg
     1741 atggcgcagt tattatcggc tgtgatgata atccgtggac gacggcggag tttatcgtct
     1801 ggctggagtc tcagggcgca ttcaatcacc cttactggat gtgtcgtggc tcctggtctt
     1861 acgcttataa caaaatcatc acggatactg gctgcggtaa tatctgtctc gctggcgcag
     1921 tgattgaggt aatgggagtg cgtggcgcga tgactattcg ggtgacaacg tcccattcag
     1981 tatctggttg gtgatacgtg ggtgacag
//
LOCUS       DAJVSD010000371         1915 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.374, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000371 DAJVSD010000000
VERSION     DAJVSD010000371.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1915)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1915)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1915
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.374"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            541..1208
                     /locus_tag="OQP62_004363"
                     /pseudo
     CDS             541..1208
                     /locus_tag="OQP62_004363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611920.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            1180..1302
                     /locus_tag="OQP62_004364"
                     /pseudo
     CDS             1180..1302
                     /locus_tag="OQP62_004364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415069.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
     gene            complement(1324..1400)
                     /locus_tag="OQP62_004365"
     tRNA            complement(1324..1400)
                     /locus_tag="OQP62_004365"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1364..1366),aa:Arg,seq:tct)
     gene            1655..>1915
                     /locus_tag="OQP62_004366"
     CDS             1655..>1915
                     /locus_tag="OQP62_004366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459547.1"
                     /note="regulates type 1 fimbriae expression; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbriae biosynthesis transcriptional regulator
                     FimW"
                     /protein_id="HCS1723733.1"
                     /translation="MLSIAIKEQNSHFEHGLKIIMTRLANQWQQKIDFLPPEEIDNAD
                     IAFLTLDDDWFSAGCYQIPMHTQHQLRVIICNKCDKEKLMFRP"
BASE COUNT          599 a          421 c          448 g          447 t
ORIGIN      
        1 tcgacaagaa gacatttcaa atagacggaa gatggctttc aggacgggcg attaacggca
       61 tagattcaaa tgaattagaa tcaattacat ctgggacatg ggacgttaga acaggggcga
      121 ggacaaatga gaatattacg gaaataatta aataacattc atgtataatt aatgttcccc
      181 gccaccaatg ggtaacgggc ggcggggatt cctacatatc gtatgtcaca aatgccccat
      241 caggtttctt agcaagaagt cgcaatgcgc catcagtccc aaaaaagaac ccaacggagc
      301 catagtgcat taatccagac tccggcaact gaccaataca cgcaggatac gcatgtgccc
      361 aaagcccatc cggttcaact ccaccacaga tgcaggaaca ccgtctttta gtgcggataa
      421 actgacccct actggtttca ctaccgggta aaggaatctg ataatctgcg gtcaatgtga
      481 atcaccacag gtttaacaga cacctcagat ccatttaaga tgacttaaag agaggtgcct
      541 atgagcggta aacgttatcc cgaagagttt aaaattgaag cggtaagaca ggttgttgag
      601 cgcggccatt ctgtttccag cgtcgcaaca catctcgata ttactaccca cagtctttac
      661 gccaggataa agaagtacgg gtcgaactcc tccaccaata aagaaataaa gagcagtcag
      721 atgatcagac cggaatccgc cgactcccga aagagttgaa gcgggttact gacgaacggg
      781 acatattaaa aaaagccgca gtagactcaa ttggtcactg caaccatgaa tgacaaaaga
      841 tggagtcctg aatgcgctcc tgatggccgt gtggcgacat aatcacccgc tatgaatggc
      901 agtcgatcct gaaatcgcac ggactggagg gcagtatgag ccgtcgtggc aactgtcatg
      961 aaaatgcggt tgcagaaagc tttttccagc tactgaagcg tgaacggata aagaaaaaga
     1021 tctacggaac gagagacgaa gccagaagcg atatttttaa ttacatagaa atgttttata
     1081 acagtagacg tcggcatggt tcgagcgagc agatgccacc ggctgaatat gaaaacctat
     1141 atcatcaacg actcagaagt gtccaggtta tccgtggcga ttcacagata tgctcacctt
     1201 gcgcctaatc atttaacgga acacgcgagg aaaatagacg acatttttgg tgatgatgtc
     1261 ccaaatatgt cccatatgga aaataaggag gaaataaaga agcgtaacgc gttgatttat
     1321 aagtggcgcg ccctgcagga ttcgaacctg cgacccacgg cttagaaggc cgttgctcta
     1381 tccaactgag ctaagggcgc cttgtgaagt gaagacttca tgtagacgaa acgcgagaat
     1441 tatacggtca ggcactcctg agtcaatggc ttttgttctg gttgctgact aagtgtacga
     1501 atatcgtctt ttctggcgca atgccaggtt ccaggaaatc gcctggacac atctcagcac
     1561 gcataaagtg ggaattaaag ccgccagtat ttagataatc aatcagtttc tttaatattt
     1621 caccatgact cacctgccgt gtaggatatt ttttatgctg agtatcgcta ttaaggaaca
     1681 aaacagtcac tttgagcatg gtttgaaaat catcatgacg cgtctggcga atcaatggca
     1741 gcagaaaatt gactttctgc cgccagaaga gatagataat gccgatatcg ctttcctgac
     1801 cctggatgat gattggttca gcgcaggctg ttaccagata cctatgcata ctcaacatca
     1861 gctacgggta attatttgta ataaatgcga taaagaaaag ctcatgttca gacca
//
LOCUS       DAJVSD010000372         1879 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.375, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000372 DAJVSD010000000
VERSION     DAJVSD010000372.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1879)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1879)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1879
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.375"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            289..1095
                     /gene="xthA"
                     /locus_tag="OQP62_004367"
     CDS             289..1095
                     /gene="xthA"
                     /locus_tag="OQP62_004367"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HCS1723734.1"
                     /translation="MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDEMFPL
                     EEVAKLGYNVFYHGQKGHYGVALLTKATPISVRRGFPDDGEEAQRRIIMAEIPSPLGN
                     ITVINGYFPQGESRDHPLKFPAKAQFYQNLQNYLETELKCDNPVLIMGDMNISPTDLD
                     IGIGEENRKRWLRTGKCSFLPEEREWMSRLLKWGLVDTFRQANPQTMDKFSWFDYRSK
                     GFVDNRGLRIDLLLASAPLAERCAETGIDYDIRSMEKPSDHAPVWATFRV"
     gene            1168..1584
                     /locus_tag="OQP62_004368"
     CDS             1168..1584
                     /locus_tag="OQP62_004368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine (deoxy)nucleoside triphosphate
                     diphosphatase"
                     /protein_id="HCS1723735.1"
                     /translation="MIKKLDVVAAIIERDGKILLAQRPVHADQAGLWEFAGGKVEPGE
                     TQPQALIRELREELGIDATPGVYIASHQRDVSGRRIHLHAWHVPAFNGLIRALEHQAL
                     AWCTPEEALEYPLAPADIPLLQAFMALRDARLTDLC"
     gene            complement(1544..1819)
                     /locus_tag="OQP62_004369"
     CDS             complement(1544..1819)
                     /locus_tag="OQP62_004369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017465441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnjH family protein"
                     /protein_id="HCS1723736.1"
                     /translation="MRRSLMVAVMAIMPMVGLANQNSRPDIQVNVPPEVFSTRGQSSQ
                     PCIQCCVYQDQNYSEGAVIKVEGVVLQCQRDEKTISTNPLVWRRVKP"
BASE COUNT          466 a          492 c          482 g          439 t
ORIGIN      
        1 cacttttact gcatgaaaag tgaatatttc cgcataatcg gtggctagaa agaggaaaaa
       61 gcgaaatatt attcagttgc caaatataat tctggaattg tgatcttata cgaaatttac
      121 tggaaattac cgccccgttc tggcgcatct gcacgcaaac cgtgccattt tcgcgctata
      181 gaaaacacca tacgcttcca ttggccgaat ctgacgatga gtggcagtca cccggtaaaa
      241 tttctgctac catcccaaca cgattcacct tgcaaagtgg cagtgactat gaaatttgtc
      301 tcttttaata tcaacggcct gcgcgcccgt ccccatcaac ttgaagcgat tgtcgaaaaa
      361 caccagcccg atgtgatcgg tctacaggag acaaaagtcc acgacgaaat gttcccgctc
      421 gaagaggtcg cgaagctggg ctataacgtt ttctatcatg gacaaaaagg ccattacggc
      481 gtcgcgctgc taacaaaagc cacgcccatt tccgtcagac gcggttttcc ggatgatggc
      541 gaagaggcgc aacgccgcat tatcatggcg gaaatcccct cgccgctggg taatatcacc
      601 gtcattaacg gctatttccc gcagggggaa agccgggatc atccgttgaa gttccccgcg
      661 aaagcgcagt tttatcagaa cttgcaaaac tatcttgaaa cggaactcaa gtgcgataat
      721 ccggtattaa ttatgggcga catgaatatc agcccgaccg acctggatat tggcatcggc
      781 gaagagaacc gcaaacgctg gctgcgtacc ggtaaatgct ccttcctgcc ggaggagcgt
      841 gaatggatgt cgcggttact gaagtgggga ttagtggaca cgttccgtca ggcaaatccg
      901 caaacgatgg ataaattttc gtggtttgat taccgttcaa aaggtttcgt ggataatcgc
      961 ggactgcgca ttgacctctt gctggcaagc gctccgctgg cggaacgttg cgcagaaacc
     1021 ggtatagact acgacattcg cagtatggaa aaaccctccg accatgcgcc ggtctgggcg
     1081 acgtttcgtg tttgattccg ctatctgatt aaccgtaagg ccgggatagc gcgacgcttc
     1141 ccggcaggaa taacgacctt aacgacaatg ataaaaaaac tcgatgttgt tgccgccatc
     1201 attgaacgcg acggcaaaat actgctggcc cagcgcccag ttcatgcgga tcaagccggt
     1261 ttatgggagt ttgccggcgg taaagtcgaa cccggcgaaa cccaaccgca ggcgcttatc
     1321 cgcgagctac gcgaagagtt agggattgac gccacgcccg gcgtctatat cgccagccat
     1381 caacgcgacg tgtctggccg acgaattcat ttgcacgcct ggcatgtgcc tgcgtttaac
     1441 ggtctgatac gtgcgctgga acatcaggcc ttagcctggt gtacgccgga agaggcgctg
     1501 gaataccccc tcgccccggc ggatattccg ctattgcagg cgtttatggc tttacgcgac
     1561 gccagactaa cggatttgtg ctgatggttt tttcgtcacg ctggcactgg agcacgacgc
     1621 cttccacttt tattaccgcg ccttcggagt aattctgatc ctggtaaacg cagcactgaa
     1681 tgcagggctg ggatgactga ccgcgcgtgc tgaaaacttc cggcgggaca ttcacctgaa
     1741 tatcaggacg actgttttgg tttgccagcc cgaccattgg cattatcgcc atcacggcga
     1801 ccatgaggct tcggcgcata ggatttcctt atttttccaa gtatattctc agtataacgg
     1861 taagccgccg tgaaaactt
//
LOCUS       DAJVSD010000373         1848 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.376, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000373 DAJVSD010000000
VERSION     DAJVSD010000373.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1848)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1848)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.376"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(569..1273)
                     /locus_tag="OQP62_004370"
                     /pseudo
     CDS             complement(569..1273)
                     /locus_tag="OQP62_004370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611456.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
     gene            1326..1631
                     /locus_tag="OQP62_004371"
     CDS             1326..1631
                     /locus_tag="OQP62_004371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001555868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system SymE family toxin"
                     /protein_id="HCS1723737.1"
                     /translation="MARLCGILTYSRVERLSVRLYGEWMPQAGFINGMPVKVRVMRDC
                     IVITPQHTRGLFVCIEGMGVTFINQKKVKAWLKTFPGALNDTGDIPVIKRSRLEGGI"
BASE COUNT          500 a          427 c          405 g          516 t
ORIGIN      
        1 aaattgcgtt attgccaata taaccagcat tgatgttaac atcgtattgt cagggtggaa
       61 tagaatgcca gtcaaaaagc aattatacct tccatttaca ttcaagtgat aacattacaa
      121 tgaaacccac cacactgggt gtgggaaact tatcttcgaa gagaggataa ttatcaggca
      181 tcgttgcaac attgtttata tttaaacata catctcctaa ctcgacggta agattattag
      241 ttaacttttc ctcgcaggga agatctttaa tggaaaatct tgttttccga aacggaaaag
      301 caattataac gctccaacga gagtctcaac actaagagct gactgacaca ggccagactg
      361 attatacagg catgaaaaag ctctcccctt cctttcagtt cttgctggat tatgcaaacg
      421 tcgcaccacc tccccgtgaa catggcacat taatttgaag caactctcat ccggtatcgc
      481 ttttcagtgc agcgaaattc atcgcaggtg cccctgtaaa tagacccgtt ttagttccat
      541 gcatttttaa gattccggcc agataacgtt attggcggta ttcctccggt atcatattgt
      601 tccgcgattc atgtggacgt tcgcagttat attctgataa ccctttatcc gtaatttccc
      661 gcacctcatt cagcgttctg aacagataag aattgagtat ttctgtacgg tatgtccggt
      721 taaaacgctc gatgaaaacg tttttcttcg gcttacccgg ctggataaac gccagcttta
      781 ctacatgttt ctttgcccat tcagccagtg ccagcgagat aaattccggt cccttatcca
      841 tacgcagcat ggccggataa ccgaggttgc tgtaatcctg tcgagtacac ggaccactcg
      901 cagagctggc agattcagat cgatttcaat cgacaacgct tcacgattac agtcatcaac
      961 aacattgaac gtgcgaaaac gacgcccata aaccagctct ggttcagcgc ttccggcgtg
     1021 accagtggcg agggattgcg taccggcagc cgttgtttac ccttacggcg aaaattcagc
     1081 ttgagcagac agtaaatacg gtggagcctt ttgtgattcc acgcgtatcc ctgccgccgt
     1141 atccagacct ccagttatcc ctggtggctt cagaaatacc ggcctcccgg tagacatctt
     1201 taacagtccg tccggattcg actgatctaa tcacaacgat gatctggtgc gcagtaatac
     1261 gggctttacg catagcgatc tcctgcgttg gcagattgat tatgtcggat gatctctaaa
     1321 tgtgaatggc tcgattatgc gggatactta catactcacg cgttgagaga ctttcagttc
     1381 gtttgtacgg tgaatggatg ccgcaggcgg ggtttattaa cgggatgccc gtcaaggtgc
     1441 gggtaatgag ggattgcatc gtgatcacgc cgcagcatac ccgcggactc tttgtctgta
     1501 ttgaagggat gggcgtgact tttattaatc aaaagaaggt gaaagcgtgg ctaaaaacct
     1561 ttccgggggc gctgaacgat accggggata ttccggtgat taagcggagc aggctcgaag
     1621 gcgggatttg acagggggtt aaataataaa aaagccggga agagttaatt tctttcccgg
     1681 ctttattaac acctaatgta ttactggtat ctattataca attctatttc agccagaaca
     1741 tattcactga aaacatattt agttttcttt atctccttcc cttctgtata gcaatataca
     1801 gaagggtcat catctctttc aataaaaaac aacgcagaat atccttga
//
LOCUS       DAJVSD010000374         1829 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.377, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000374 DAJVSD010000000
VERSION     DAJVSD010000374.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1829)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1829)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1829
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.377"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(11..82)
                     /gene="ypdK"
                     /locus_tag="OQP62_004372"
     CDS             complement(11..82)
                     /gene="ypdK"
                     /locus_tag="OQP62_004372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_077777854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein YpdK"
                     /protein_id="HCS1723738.1"
                     /translation="MKYFFMGISFMVIVWAGTFALMI"
     gene            complement(485..1405)
                     /gene="lpxP"
                     /locus_tag="OQP62_004373"
     CDS             complement(485..1405)
                     /gene="lpxP"
                     /locus_tag="OQP62_004373"
                     /EC_number="2.3.1.242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid IV(A) palmitoleoyltransferase"
                     /protein_id="HCS1723739.1"
                     /translation="MFPQSKFSRAFLHPRYWLTWFGVGVLWLLVQLPYPVLRFLGTRT
                     GKLARPFLKRRESIAQKNIELCFPTLSREEREKLIAENFHSLGMALLETGMAWFWPDS
                     RVRKWFDVDGLDNLTRAQAQNRGVMVVGVHFMSLELGGRVMGLCQPMMATYRPHNNPL
                     MEWVQTRGRMRSNKAMIGRNNLRGIVGALKKGEAVWFAPDQDYGPKGSSFAPFFAVEN
                     VATTNGTYVLSRLSGAAMLTVTMVRKSDNSGYRLYITPEMEGYPADENQAAAYMNKII
                     EKEIMRAPEQYLWIHRRFKTRPLGEASLYI"
BASE COUNT          519 a          435 c          421 g          454 t
ORIGIN      
        1 cattgtactt ttaaatcatc agggcgaaag taccggccca aacgatgacc ataaatgaaa
       61 tgcccataaa gaaatatttc acgtttcatc tctccgcgta cctgtcgtac gcctaaatga
      121 acttacactt acctgattat agagagttga tgccggataa tacgaaattg agaattattc
      181 gtgtttcgac cgcctgcatc acctcagaat tctgcgcgtc atcgctccag acggcgctaa
      241 tgtacgccta aaaatgaggt gaaacaagag gcattttctt atttattttt agtaacttac
      301 aagtgtcgtg aatcggcgac agtttaattt ctgacagtga tgaatcgcta ttgagcgacg
      361 ccgccgacac agtaaaaaaa cgcctgtaaa caggagactt atcgctaaaa gcaggaatga
      421 gtaatttacg atgtgaatat tatggcaatg cgaaatgaca aaataaaagg ccttgcggcc
      481 tttttcagat gtagagtgac gcttccccca acgggcgagt cttgaaacgg cgatgaatcc
      541 agagatattg ctccggggcg cgcatgatct ctttctcaat aattttattc atataggcag
      601 cggcttgatt ttcatctgcc gggtaacctt ccatttcagg ggtaatatac agacgataac
      661 ccgagttatc ggatttcctt accattgtaa cggtcagcat ggcggcgcca gacagcctgg
      721 acagtacata ggtaccgttg gtggtggcga cgttttcaac cgcgaaaaat ggcgcaaagg
      781 agctgccttt aggaccgtag tcctggtcgg gagcaaacca aacggcttcc ccttttttta
      841 gcgcgcccac aatgccgcgc agattgtttc tgccgatcat cgctttattt gagcgcatac
      901 gaccgcgcgt ctgcacccac tccatgagcg gattgttatg cggacgatag gtcgccatca
      961 tcggctggca gagacccatt acccggcctc ccaattccag cgacataaaa tgcacgccaa
     1021 cgaccattac gccgcgattt tgcgcctgcg cacgggtaag gttgtccagc ccgtccacat
     1081 caaaccattt gcgaacccgg ctatcaggcc agaaccaggc catgcccgtt tcaagcagcg
     1141 ccatgccaag agagtggaaa ttctcggcga tcagtttttc cctttcttcc cgggagaggg
     1201 tcggaaaaca gagttcaatg tttttctgag cgatcgactc acgtcgcttc aggaaggggc
     1261 gcgccagctt accggtgcgg gtgcccagaa aacgcaaaac cgggtaggga agctgcacca
     1321 gtaaccagag gacgccaacg ccaaaccacg tcagccagta gcgcgggtgc aaaaacgcgc
     1381 gtgaaaattt gctttgagga aacataaaat accttctgta gatacgaaaa taatgtatcg
     1441 cagaagagtc attatccgca gcggtacact ctgaaatacg catcatcctt caagttgcgt
     1501 tcgcttatcc gaagcactta cttgagtaag ctcatcaggg taacttgaat gatttgcgta
     1561 tagttaggcc atcatgtacg acaatggttc ccgtaaggag tgtaaaacta agtcagtact
     1621 aaaccacgag ggcatgaacg ccaggcaggc taatgtacca ccagttattt actcgcgccc
     1681 agaaattctt tatcaagaag cgtaaatatt tctcccgtag caaaaataag ctaatcatta
     1741 tttttaatgc attgttttta cagtgataat tttatttcag acgaaggtta ttgaaaaatg
     1801 attagaaaat aaaatgtgag ataaatgtt
//
LOCUS       DAJVSD010000375         1814 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.378, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000375 DAJVSD010000000
VERSION     DAJVSD010000375.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.378"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            342..623
                     /locus_tag="OQP62_004374"
     CDS             342..623
                     /locus_tag="OQP62_004374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjcB family protein"
                     /protein_id="HCS1723740.1"
                     /translation="MAAITTGVVLLRWQLLSAVLMFLASTLNIRFRKSDYIGLAVISS
                     GLGVVSACWFATGLLGITMMDLAAIWHNIEAVMVETMSQTPPEWPMVLT"
     gene            complement(902..>1814)
                     /gene="siiF"
                     /locus_tag="OQP62_004375"
     CDS             complement(902..>1814)
                     /gene="siiF"
                     /locus_tag="OQP62_004375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SPI-4 type I secretion system protein SiiF"
                     /protein_id="HCS1723741.1"
                     /translation="QITIMVIAFFMVIKGDVTTGAIVSSVIVSGRISGIISNFSSTLI
                     SILSAEKTGKDLLSFFDEDQAEKTPALQSISKCNGDISIRGVSYQYDAQSPMIINRLS
                     IDIPAGQRVAVIGECGAGKSSLLGMLSGYLSPTDGAILYDGYNLGHLSQNFFSQHLSV
                     VTTHDVLFTGTIESNFALKPQNDRGRVLKALHLANCGFILQHPMGLKFPVNFMAKNLS
                     SGQQQQLLLARSLSSNASVFLWDEPTSNLDENTEKQIFDNLDEFIHGKTLIMVTHRRY
                     LIKYFDRVLVMKGGKIIRDCSPDKLLM"
BASE COUNT          522 a          413 c          378 g          501 t
ORIGIN      
        1 atctttactc ctttcttttg ataaataact tgatattttt atcaggtctg aatttcacga
       61 aaaaaaataa aagagtagta ataatacatc tttgctttcc ggcagtttct ctacggacgc
      121 gcagaagtca cacaaaaaat aaggttataa aacgcacaaa aaatacattg ccgatctggc
      181 gaataagcct gtttttgtga tatagttcac aaaaacaatg aaacagaaac aatgtttcat
      241 tcgatgttga tgtgacgtcc gttgatagcc agaatgtccc acgtttcccg ggaacaacgc
      301 cgtgctgtcc tggacaaagg tctattcaga ggaaatgttt catggctgcc ataaccactg
      361 gtgtcgttct tctccgctgg caactgttga gcgccgtgct catgttttta gccagcacgc
      421 tcaatatccg tttccgtaaa tcagattata ttggtctggc ggtgatcagt agcggtctgg
      481 gcgtggtatc cgcctgctgg tttgccaccg gtttactcgg tattaccatg atggatctcg
      541 ctgcgatctg gcataacatt gaagccgtga tggtcgaaac gatgagccag accccgccag
      601 aatggccgat ggtgctgacc tgatacgcta tcgctgccgc tgaagtcgcc caccggttat
      661 ctcaaggcgg aatcgcgcgc caggggtagc cttgcgaacc atcacgtccc tcgcattgcc
      721 gttgatgagg gccgccaggt gtggttatcc aaaaatggca agtggaatag ccctaacaga
      781 atcgagctaa acttattgaa gacgttgccg actcgttaaa tgacaaaaaa agacccgttt
      841 gtgcaacggg tcttttttat taagcagtac cacctgataa cagcgacaag cgcggcttat
      901 tttacattaa taatttatcc ggagaacaat cacggattat ttttccacct ttcattacca
      961 ggacccggtc aaaatacttt atcaggtatc gacgatgcgt caccatgatc aacgttttcc
     1021 catgaataaa ctcatctaag ttatcaaaaa tttgcttctc ggtattctca tccagatttg
     1081 atgttggttc atcccataaa aagacgctgg cgttactgct cagactacgt gctaataata
     1141 actgctgctg ctgtccggat gacaggtttt tagccataaa attcaccgga aacttcagcc
     1201 ccataggatg ttgcaagata aaaccacagt tcgccagatg aagcgccttg agtactcgtc
     1261 ccctgtcgtt ttgcggtttt aacgcgaaat tactttcaat ggttccggtg aataaaacat
     1321 catgtgtcgt caccacactt aaatgctgag aaaaaaagtt ctgcgataaa tgtcctaagt
     1381 tatatccatc atataaaatg gcaccgtctg ttggcgaaag gtagccagat agcattccca
     1441 gtaatgagct ttttcctgca ccgcattcgc ctatcactgc gacacgctgc cccgcaggta
     1501 tgtctataga cagtcgatta ataatcatcg gagattgagc atcatactga taactcacgc
     1561 cccgaataga gatatcgcca ttgcactttg atattgactg taatgccggt gttttttctg
     1621 cctgatcttc atcaaaaaaa gaaagcagat ccttaccggt tttttctgct gataaaatag
     1681 agattaatgt agaagaaaaa ttcgaaatga tcccggaaat acgaccagag acaatgacag
     1741 atgaaacaat tgcgccagta gtaacatcac ccttgattac cataaaaaag gctattacca
     1801 taatagttat ttgg
//
LOCUS       DAJVSD010000376         1807 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.379, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000376 DAJVSD010000000
VERSION     DAJVSD010000376.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.379"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..329
                     /locus_tag="OQP62_004376"
     CDS             <1..329
                     /locus_tag="OQP62_004376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000283397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1723742.1"
                     /translation="PDLRGEFIRGWDDERGIDPGRQLLEWQKGTLVGGRDDNDAAVDI
                     SYMSNGNSIDYGGDKTFSTNYRSDYLWYAILGNVTGRAKAALSGSFFNVTRPRNIAFN
                     YIVRAT"
     gene            340..816
                     /locus_tag="OQP62_004377"
     CDS             340..816
                     /locus_tag="OQP62_004377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000503759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HCS1723743.1"
                     /translation="MGEGSALPVGVPVPWPSATLPEGWLKCNGAAFSSEMYPKLAKAY
                     PANKLPDLRGEFIRGWDDGRGIDAARALLSIQNGMLEKHRHIVVANDGYDTKDEWELA
                     TIFKKTYTQGRGLDATNTGGSLIPSPTLHSRGSIGNTGGSETRPRNIAFNYIVRAA"
     gene            complement(823..1440)
                     /locus_tag="OQP62_004378"
     CDS             complement(823..1440)
                     /locus_tag="OQP62_004378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001556994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1723744.1"
                     /translation="MNNAAAVLDQNGIAITAGDITVYNYDAENREYLSATVEYLAYGV
                     GIPAHSCIDAPPEKRPGFAVCRDTDQNIWKYVPDHRGETVYSTENGNAVQITQPGDYP
                     PDTTVKQPATIYDVWDGETWVTDAGRQHAAELEAAGAHRQQLEEQAMASVELINLKLR
                     AGRRLTPQETEKLNAVLDFIDVLNATDISTAPDINWPEMPLAAAS"
     gene            complement(1440..>1807)
                     /locus_tag="OQP62_004379"
     CDS             complement(1440..>1807)
                     /locus_tag="OQP62_004379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000283275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1723745.1"
                     /translation="NKLPDLRGEFIRGWDDGRGIDSGRSLLNAQSHSVIDHIHYMELW
                     TGEGLAANSTRAGTNPGILATYGDGGIVKTDESGVKVPSSLRAIGTRGVYRLGANGGN
                     TGTENRPRNIAFNYIVRAT"
BASE COUNT          455 a          413 c          447 g          492 t
ORIGIN      
        1 taccggattt acggggtgag tttattcgtg gctgggatga cgagcgcggg attgatcctg
       61 gtcgccagtt gcttgagtgg cagaaaggta ctttggttgg tggtagagat gacaatgatg
      121 ccgcagttga tatttcatat atgagtaacg gaaatagtat tgattacggt ggcgataaaa
      181 cattttcaac gaattaccgg agtgattatt tatggtatgc aattctgggt aacgtcactg
      241 gtcgtgccaa agctgcttta agtgggtcct tttttaatgt aactcgtcca cgcaacatcg
      301 cctttaacta cattgtgaga gcaacataga aacgttggtt tgggggaagg ctctgcactg
      361 cccgttggtg tacctgttcc gtggccgtca gcaacactgc cagagggatg gctgaaatgt
      421 aacggcgcag cattttcttc tgaaatgtac cccaaactgg caaaggctta ccccgcgaat
      481 aaattaccgg atttacgggg tgagtttatt cgtggctggg atgatgggcg aggaattgat
      541 gcggcacgcg ctttattgag cattcaaaac gggatgttgg aaaaacaccg ccatattgtt
      601 gtagctaacg atggatatga cacaaaagat gaatgggagt tggccacgat tttcaaaaaa
      661 acatatacac aaggcagggg gcttgatgcc acaaatacag gagggagttt gattccatca
      721 ccaacgcttc attcacgagg aagtattggt aacacaggtg gtagtgaaac ccgcccccgc
      781 aatattgcat ttaactatat cgtgagggcg gcttagttat attcaactgg ctgctgccag
      841 aggcatttcc ggccagttga tatccggtgc agtgctgatg tcagtcgcat taagcacatc
      901 tatgaaatca agcacggcgt ttagtttttc cgtctcctgg ggcgtcaatc ggcgtccggc
      961 tcgtagtttg agatttataa gctcaacaga tgccattgcc tgttcctcaa gttgctgacg
     1021 atgcgctccg gcagcttcca gttctgctgc gtgctgtcgt cccgcatctg tcacccaggt
     1081 ctcaccatcc cagacatcat agatagtagc tggctgtttc accgtcgtat caggagggta
     1141 atctcccggt tgtgtgattt gcacagcgtt accattctct gtgctgtaaa ccgtttcgcc
     1201 tctgtggtct ggaacatatt tccagatgtt ctggtcggta tcacgacaga cagcgaagcc
     1261 ggggcgtttt tctggtggcg cgtcaatgca tgagtgagcc ggaattccaa caccataagc
     1321 gagatactca acagtggcag agagatattc acggttttca gcatcgtagt tataaacggt
     1381 aatatcgcct gcagttatag cgataccatt ctgatcaagt actgcagcag cattattcat
     1441 taagtagccc ttacaatata gttaaacgca atattacggg ggcggttttc cgttcctgta
     1501 ttccctccgt tggcacctaa tctataaaca ccacgagtgc caatagcacg tagtgaagat
     1561 ggaactttta cacctgactc atctgtttta acaatcccgc catcaccgta tgtagccagt
     1621 ataccagggt ttgttcctgc acgggtgcta tttgcggcaa gcccttcacc agtccataac
     1681 tccatatagt gaatatgatc tataaccgaa tgtgattgtg cattaagcaa ggaacgccct
     1741 gaatcaattc cccgcccgtc atcccagcca cgaataaact caccccgtaa atccggtaat
     1801 ttattcg
//
LOCUS       DAJVSD010000377         1791 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.380, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000377 DAJVSD010000000
VERSION     DAJVSD010000377.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1791
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.380"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            346..786
                     /locus_tag="OQP62_004380"
     CDS             346..786
                     /locus_tag="OQP62_004380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001748181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1723746.1"
                     /translation="MQKYIFSADKNAFFPVELKIAYQESGEWPDDGIEIDDTVAAEFM
                     KEAPEGKYRGVIDGMPAWIDIPPPTHEEQIAAAELEKQQLINQVNEYINSKQWPGKAA
                     IGRLKGEELAQYNLWLDYLDALELVDTSGAPDIEWPTPPAVQAR"
     gene            complement(758..1351)
                     /locus_tag="OQP62_004381"
     CDS             complement(758..1351)
                     /locus_tag="OQP62_004381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1723747.1"
                     /translation="MKPVFDENGLATVPGDMRCYYYDAVTSEYTGWSDEYINTGVSMP
                     ACSTGIDPGEYIPGRVAVFTGKGWSHEEDHRNETVYSTENGAAVTVDYIGAIKDGYVT
                     LSPLTPYDKWDGEKWVTDTEAQHSAAVEAAEAQRQSLIDAAMASISLIQLKLQAGRKL
                     TQPENTRLNAVLDYIDAVTATDTSTAPDVIWPELPEA"
     gene            complement(1351..>1791)
                     /locus_tag="OQP62_004382"
     CDS             complement(1351..>1791)
                     /locus_tag="OQP62_004382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016243689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HCS1723748.1"
                     /translation="PVGVPVPWPSATPPTGWLKCNGAAFSAEEYPELAKVYPTNKLPD
                     LRGEFIRGWDDGRGVDAGRQLLSSQGDAIRNIEGFADGGIGMSFDAIRGAFYDAGTRS
                     ARMPNNTTDIGKTDDLGFDASRVVPTANENRPRNIAFNYIVRAA"
BASE COUNT          463 a          445 c          416 g          467 t
ORIGIN      
        1 ggcaaaacgg aatgtgggca caggagataa tcagataccg gatatgggag cattcgcttc
       61 tggttcggga tggttcaggc taccaggtgg atatattgtt cagtttggca ctttttcagg
      121 aaacacgacc cgctttatca gtggacactt ccctatacca ttccctaatc agccgatggt
      181 ttcagtcagt gttatgtctg ataacgttca gtcagacccg tcgattcctg ctccgcaggt
      241 tttgtctgta aattttgaac atatcagtaa ttcagcgtgg cgtgtggcaa ccagtgatat
      301 ctcacagcaa tacagattca gttatatttc gataggacgg tagaaatgca gaaatatatt
      361 ttcagcgccg ataaaaatgc gtttttccct gtggagctta aaatcgctta tcaggaatcc
      421 ggcgaatggc ccgatgatgg aatcgaaatt gacgacactg ttgccgccga atttatgaag
      481 gaagcaccag aaggaaaata cagaggtgtc atcgacggaa tgcctgcatg gattgatatt
      541 ccaccgccaa ctcatgagga acaaattgcc gcagccgaac tggaaaagca gcaattgatt
      601 aatcaggtca acgaatacat aaacagtaag caatggcctg gtaaagcggc gattggtcgc
      661 ctgaaaggtg aggaactggc gcaatataat ttgtggctgg attatctgga cgcactggaa
      721 ctggtcgata cttccggtgc gccagatatt gaatggccta cgcctccggc agttcaggcc
      781 agatgacgtc cggcgctgtg ctggtatctg ttgccgttac cgcgtcaata taatccagca
      841 cagcgttaag tcgggtgttt tctggctgcg tcagcttccg cccggcctgt aatttcagtt
      901 gaatcagact gatggaagcc attgcagcat caatcagcga ctggcgctgt gcttctgcag
      961 cttctactgc ggcgctatgc tgtgcctcgg tatccgtcac ccatttctca ccatcccatt
     1021 tatcgtatgg cgttaacggt gaaagcgtga cataaccgtc tttgatggca ccgatataat
     1081 ccactgtaac agctgcgcca ttttcagttg agtaaacggt ctcattgcga tggtcttctt
     1141 catggctcca tcccttaccc gtaaatactg ccactcttcc cggaatgtat tcgcccgggt
     1201 caataccagt ggaacaagcg ggcatactta cgccagtatt aatatattca tcagaccagc
     1261 ccgtatattc agacgttact gcatcataat aataacaacg catatcaccc ggcactgtag
     1321 ccagcccatt ttcatcaaaa acaggtttca ttatgcagcc ctcacaatat aattaaaggc
     1381 gatgttacgt ggacggtttt cattagctgt tggcacgaca cgagaggcgt cgaatccaag
     1441 gtcatcggtt ttgcctatat cagttgtgtt attcggcatt ctcgcagatc gtgttcctgc
     1501 atcataaaaa gcccctctga ttgcatcaaa agacataccg atcccgccat ctgcgaatcc
     1561 ctcaatattt cttattgcat ccccctgtga agataataat tgtcgcccgg catccactcc
     1621 acgtccgtca tcccagccac gaataaattc accgcgtaaa tcaggcaatt tatttgtcgg
     1681 gtaaaccttt gccagttccg ggtattcttc agcagaaaaa gccgcaccat tgcatttcag
     1741 ccagcctgtt ggcggagtgg cggaaggcca cggaacaggc acaccaacgg g
//
LOCUS       DAJVSD010000378         1789 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.381, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000378 DAJVSD010000000
VERSION     DAJVSD010000378.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1789
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.381"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(161..1090)
                     /gene="metA"
                     /locus_tag="OQP62_004383"
     CDS             complement(161..1090)
                     /gene="metA"
                     /locus_tag="OQP62_004383"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HCS1723749.1"
                     /translation="MPIRVLDELPAVNFLREENVFVMTTSRASGQEIRPLKVLILNLM
                     PKKIETENQFLRLLSNSPLQVDIQLLRIDARESRNTPAEHLNNFYCNFDDICDQNFDG
                     LIVTGAPLGLVEFNDVAYWPQIRQVLEWAKDHVTSTLFVCWAVQAALNILYGIPKQTR
                     TDKLSGVYEHHILHPHALLTRGFDDSFLAPHSRYADFPAALIRDYTDLEILAETEEGD
                     AYLFASKDKRIAFVTGHPEYDAHTLAGEYFRDVEAGLNPEIPYNYFPKNDPQSIPRTT
                     WRSHGNLLFTNWLNYYVYQITPYDLRHMNPTLD"
     gene            1247..1684
                     /locus_tag="OQP62_004384"
     CDS             1247..1684
                     /locus_tag="OQP62_004384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HCS1723750.1"
                     /translation="MMINIRRSRREEGEKLIAIWRRSVDATHDFLSNAYRAELEELVS
                     DFLPEAPLWVAVTDQDEPVGFMLLTGEHMDALFIDPDVRGQGIGKMLVEHALTLAPGL
                     TTNVNEQNTQAVGFYKKMGFKVTGRSEVDDLGKPYPLLNLIYP"
BASE COUNT          498 a          386 c          456 g          449 t
ORIGIN      
        1 aaaacaattt ccatttttaa tttaattaca cattaaccta ttgataacaa tataaattaa
       61 atttaattac atgatgaggt gcgtttcgga aataaaaaag gcacccgaag gtgcctgatt
      121 caacatgctg aaacgcttta ggattgtcag aagcagaaga ttaatccagg gttggattca
      181 tgtgacgcag atcatatggc gtaatctggt agacataata gttgagccag ttagtaaaca
      241 gtaaattgcc gtggctgcgc caggttgtgc gcggtatgct ttgcggatcg tttttcggga
      301 aatagttgta cggaatctcc ggatttaacc cggcctcaac gtcacgaaaa tattcccccg
      361 ctaacgtatg agcgtcatat tcaggatgac cggtgacaaa cgcaatacgt ttatctttgc
      421 tggcaaacag gtacgcatcc ccttcttctg tttcggccag aatttcaaga tccgtataat
      481 cccgtattag cgccgccggg aaatcggcat agcgtgagtg tggcgcaaga aacgaatcat
      541 caaaaccacg cgttaacaga gcatgtggat gaagaatgtg atgttcatag acgccggaaa
      601 gtttatctgt acgggtctgc ttagggatac cataaagaat attgagtgcg gcctgaacgg
      661 cccaacagac aaatagcgtc gaagtaacgt gatctttcgc ccattccagc acctgcctaa
      721 tctgcggcca gtaagccacg tcattaaact ccaccagacc cagcggcgct ccggtcacga
      781 taagcccatc aaagttctga tcgcagatat cgtcgaagtt acagtaaaag ttgttcagat
      841 gctcggctgg cgtgttcctc gactcgcggg catctatccg cagtagttga atatcgacct
      901 gcaatggcga gttcgatagc aaacgcagaa actgattttc cgtttcaatc ttcttcggca
      961 tcaggttaag gataagtacc tttagcgggc gaatttcctg acctgatgcg cgagaagtcg
     1021 tcatgacgaa gacattctcc tcacgtaaaa aattgacggc gggtagctcg tccagcacgc
     1081 gaatcggcat aacctgataa cctcacgata tacgtttaaa cgtttagaca tccagatagc
     1141 tgaagatact cagaaatcag gcgaatgtcg agtctgcaag ttcaaggtga gaaagtttca
     1201 cgacagcatt tgcattagaa tagaagtaag caaaaaagga gtgaagatga tgattaacat
     1261 tcgtcgttca aggcgtgagg aaggggaaaa actgattgcg atctggcgtc gctcagtcga
     1321 tgccacgcac gattttctgt caaacgctta tcgggccgaa ctggaagaac tggtgagcga
     1381 ttttctgcca gaagcgccac tatgggttgc cgtgaccgat caggatgagc cggtagggtt
     1441 tatgctgctt accggtgagc atatggatgc tctgtttatc gatccggacg tgcgtggtca
     1501 gggtatcggt aagatgctgg ttgaacatgc gttaacactg gcgccgggat tgacaaccaa
     1561 tgttaacgag caaaatacac aagctgttgg attttataag aaaatgggat tcaaggtgac
     1621 gggacgttcg gaggtcgacg atcttgggaa accgtatcca ttgttgaatt taatttatcc
     1681 gtgagtagtg gcgctgcctg ataagtgcat gcaggccgga taaggcgaag ccgccatccg
     1741 gcggtgcagg ttgcctgatg gcgctgcgct tatcaggcct acattttta
//
LOCUS       DAJVSD010000379         1700 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.382, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000379 DAJVSD010000000
VERSION     DAJVSD010000379.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.382"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..528)
                     /locus_tag="OQP62_004385"
     CDS             complement(<1..528)
                     /locus_tag="OQP62_004385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723751.1"
                     /translation="MRLKVKENITLWRNEGLIAYVALGFLCTFFMEVNALLPYYLQQS
                     IFFETLMSYMAFNTLFSLALSEIFFAMLVVICHNTKLERLTNSILQELHKRIMQGSFI
                     ISFLCFGIFLFCVMAFCIGSLTTNNNYYGKHVINFAYPFVLFLSFPYLIHKGITILCT
                     ILKAFPKGKIHAAIII"
     gene            complement(602..934)
                     /gene="symE"
                     /locus_tag="OQP62_004386"
     CDS             complement(602..934)
                     /gene="symE"
                     /locus_tag="OQP62_004386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endoribonuclease SymE"
                     /protein_id="HCS1723752.1"
                     /translation="MTTVHSIADPCDPEVSPTNNRHLTVSYASRYPDYTRIPALTMKG
                     QWLEAAGFATGTEVDVRVMNGCIVLTAQQPQPEESELMQSLRQACKLSARKQKQVQAF
                     ISVMAGSK"
     gene            complement(1162..>1700)
                     /locus_tag="OQP62_004387"
     CDS             complement(1162..>1700)
                     /locus_tag="OQP62_004387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016505871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HCS1723753.1"
                     /translation="SLKLGDVLICEGGEPGRCAIWSEPQDIPVIFQKALHRARVKDKI
                     IPEWLVYNLKNDSNNISLSQLFTGTTIKHLTGKALANYPIRVPPLEEQHEIVRRVEQL
                     FAWADTIEKQVNNALNRVNSLTQSILAKAFRGELTAQWRAENPSLISGENSAAALLEK
                     IKAERAASGGKKTSRKKA"
BASE COUNT          473 a          343 c          392 g          492 t
ORIGIN      
        1 tattattatt gctgcatgaa ttttgccttt gggaaatgct tttaatatag tacacaggat
       61 tgttataccc ttatgtataa gataaggaaa agatagaaat aaaacaaatg ggtaagcaaa
      121 atttatgaca tgtttcccat agtaattatt atttgttgtt agcgaaccaa tacagaatgc
      181 catcacacaa aatagaaata ttccgaagca taagaaggat ataatgaaag aaccttgcat
      241 aattcttttg tgcaactctt gcaaaatact atttgtgagc ctttccagtt tagtgttatg
      301 acaaataact accaacatcg caaaaaaaat ctcagataaa gcaagcgaaa ataacgtatt
      361 gaaggccatg tagctcatca gcgtttcgaa aaatatactt tgctgaagat agtatggcaa
      421 tagagcgttg acctccataa aaaaagtaca tagaaatcca agggcgacat aagcaattaa
      481 gccttcattt ctccaaagcg taatgttttc ttttactttt agccgcatgg ttttccttca
      541 ctcattgata tgaattataa ttaaagctgg caagggttct ttgccagctt attttatgcg
      601 tttacttaga acctgccatc acgctgataa acgcctgcac ctgcttttgc ttacgcgccg
      661 acagcttgca cgcctggcgc agcgactgca tcaactcgct ttcttctggt tgcggctgct
      721 gtgccgtgag cacaatacag ccgttcatca ccctcacatc cacctcggta ccggtggcga
      781 aaccggcggc ttccagccac tggcccttca tggtgagggc gggaatgcgg gtataatccg
      841 gataacgact cgcataactc acggtaaggt gacggttatt tgttggggat acttctggat
      901 cgcacggatc tgcaatagaa tggacggtag tcatgatggc tattctcctg gaatagtgat
      961 tgtgatgagc gatatggccg tgttcccgca cggccatatc gcgctaaata cctgtatata
     1021 acatcagtaa ataaaagaaa agtccagctg aaaatagact gtaatgggaa tgttcaggaa
     1081 gaaactggat atatttttga tggttatgaa tgcgggggaa taataaaaag cgcaccggga
     1141 aggtgcgcag gaaaataagc gtcaggcttt tttacgcgag gtttttttac caccgctggc
     1201 ggcgcgttcg gccttgattt tttccagcag ggcggcggcg ctgttttcac cgctgataag
     1261 acttgggttt tccgcacgcc actgggcggt aagctcgccg cggaaggcct ttgccaggat
     1321 tgactgggtg aggctgttga cgcggttcag ggcgttgtta acctgctttt caatggtgtc
     1381 ggcccaggcg aagagttgtt cgacgcggcg gacgatttcg tgttgttctt ctaatggagg
     1441 aactctgatg ggataatttg ctagtgcttt tcctgtaagg tgtttaattg tagttcctgt
     1501 aaagagctga gataagctaa tgttatttga atcatttttc aaattataaa ctaaccattc
     1561 ggggatgatt ttgtctttta cccgtgctcg atgtaatgct ttttggaaaa taacaggtat
     1621 gtcctgaggt tcactccata tagcacatcg accaggttca ccaccttcac atattaaaac
     1681 atcgccaagc ttgagtgata
//
LOCUS       DAJVSD010000380         1697 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.383, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000380 DAJVSD010000000
VERSION     DAJVSD010000380.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1697)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1697)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.383"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..945
                     /locus_tag="OQP62_004388"
     CDS             <1..945
                     /locus_tag="OQP62_004388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HCS1723754.1"
                     /translation="VYKRLFQKWARLDPLPYSQRILNIRDKVTTQEDSVIVIHNSMKL
                     YRQIRERNPNAKLVMHMHNAFEPELPDTDAKIIVPSQFLKAFYEERLPAAAVSIVPNG
                     FCAETYKRNPQDNLRQQLNIAEDATVLLYAGRISPDKGILLLLQAFKQLRTLRSNIKL
                     VVVGDPYASRKGEKAEYQKKVLDAAKEIGTDCIMAGGQSPDQMHNFYHIADLVIVPSQ
                     VEEAFCMVAVEAMAAGKAVLASKKGGISEFVLDGITGYHLAEPMSSDSIINDINRALA
                     DKERHQIAEKAKSLVFSKYSWENVAQRFEEQMKSWFDK"
     gene            complement(1002..>1697)
                     /gene="rfaL"
                     /locus_tag="OQP62_004389"
     CDS             complement(1002..>1697)
                     /gene="rfaL"
                     /locus_tag="OQP62_004389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase RfaL"
                     /protein_id="HCS1723755.1"
                     /translation="PALLNIWLFRKNSIKLVFLVLSAIYLFFILGTLSRGGWLAVLIV
                     GVLWAILNRQWKLIGVGAILLAIIGALVITQHTNKPDPEHLLYKLQQTDSSYRYTNGT
                     QGTAWILIQENPIKGYGYGNDVYDSVYNKRVVDYPTWTFKESIGPHNTILYIWFSAGI
                     LGLASLAYLYGAIIRETASSTFRKVEISPYNAHLLLFLSFVGFYIVRGNFEQVDIAQI
                     GIITGFLLALRNR"
BASE COUNT          526 a          349 c          371 g          451 t
ORIGIN      
        1 gtttataagc gtctttttca gaaatgggct cgtctcgacc cactacccta ttcccagcgc
       61 atccttaata ttagagataa agtgactacc caggaagata gcgtcattgt tattcataat
      121 agtatgaaac tgtatcggca gatcagagag cgcaatccga atgcaaaact ggttatgcac
      181 atgcataacg catttgaacc agaacttcct gatacggatg caaaaattat cgtgcccagt
      241 cagtttctta aagcgtttta tgaagaaaga ttgcccgccg ctgctgttag tattgtgcct
      301 aatggttttt gtgctgagac ttataaaaga aacccacaag ataatcttcg tcagcaatta
      361 aatattgcgg aagatgccac cgttctctta tatgccggga gaatttcgcc tgataaaggc
      421 atcctgttgc ttttgcaggc gttcaaacaa ttacgtacct taagaagtaa tattaaactt
      481 gtcgttgttg gcgaccctta tgcaagccgc aagggtgaaa aagcagagta tcaaaagaaa
      541 gtactggacg ccgcaaaaga gattggaact gattgcatta tggctggagg gcaatcacct
      601 gaccagatgc ataacttcta tcatatagcc gatctggtta tcgtgccatc tcaggttgaa
      661 gaagcatttt gcatggtggc tgtagaagcg atggcagcag gaaaagcggt tcttgccagc
      721 aaaaaagggg ggattagcga atttgtgtta gatggcataa cgggctatca cctcgcagaa
      781 cctatgtcga gcgacagtat aattaatgat attaaccgtg cgcttgctga taaggaacgc
      841 caccagattg ccgaaaaagc aaaatccctg gtgttttcaa aatacagttg ggaaaatgta
      901 gcgcagcgtt tcgaggaaca aatgaaaagc tggtttgata agtgattgag tcctgatgat
      961 ggaaaacgcg ctgataccgt aataagtatc agcgcgcttt tttatctatt tcttagcgcc
     1021 agcagaaaac cggtaatgat accaatttga gcaatatcga cctgttcaaa attgccacga
     1081 acgatataaa aaccgacgaa agataaaaat agcaagagat gagcattgta ggggcttatc
     1141 tctactttcc tgaaggtaga gctggctgtt tccctgatga tagcgccata taaataggcc
     1201 aggctcgcca gacccaatat gcctgcacta aaccagatgt acagaatggt attatgcgga
     1261 ccgatagatt ctttaaaggt ccacgttgga taatcgacaa cgcgtttatt ataaacacta
     1321 tcatacacat cattaccata gccgtagccc ttgatcgggt tttcctgaat cagtatccac
     1381 gcggtgccct gggttccgtt agtataacga tatgagctat ctgtctgctg taatttataa
     1441 agtaaatgtt ctgggtctgg tttgttagta tgttgagtga taaccaaagc gccgataatg
     1501 gctaataaaa tggcaccaac tcctattaac ttccattggc gattcagtat tgcccataga
     1561 acacctacta tgagcactgc caaccatccc cctcgcgata gggttcccag gataaagaaa
     1621 aggtagatag cgctaagcac caaaaaaacc aacttaattg aattttttct aaacaaccaa
     1681 atattcaata atgctgg
//
LOCUS       DAJVSD010000381         1669 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.384, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000381 DAJVSD010000000
VERSION     DAJVSD010000381.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.384"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            142..543
                     /gene="stpA"
                     /locus_tag="OQP62_004390"
     CDS             142..543
                     /gene="stpA"
                     /locus_tag="OQP62_004390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein StpA"
                     /protein_id="HCS1723756.1"
                     /translation="MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEE
                     ELQQRQLAEKQEKINAFLELMKADGINPEELFAMDSAMPRSAKKRQPRPAKYRFTDFN
                     GEEKTWTGQGRTPKPIAQALAAGKSLDDFLI"
     gene            complement(633..813)
                     /locus_tag="OQP62_004391"
                     /pseudo
     CDS             complement(633..813)
                     /locus_tag="OQP62_004391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000494935.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(892..1419)
                     /locus_tag="OQP62_004392"
     CDS             complement(892..1419)
                     /locus_tag="OQP62_004392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese family protein"
                     /protein_id="HCS1723757.1"
                     /translation="MSIGIVSPREAQALIAQGAKLIDVRDADEYLREHIPHAQLAPLS
                     RLEQGDLPANLRAEQIIFHCQSGKRTSSNAAKLQAIAAPAQVSLLEGGIDGWKAAGLP
                     VTEDKSQPLPLMRQVQIAAGGLTLLGVILGYTVHGGFFLISGFVGAGLMLAGITGFCG
                     MARLLEKMPWNTRTH"
     gene            complement(1429..>1669)
                     /locus_tag="OQP62_004393"
     CDS             complement(1429..>1669)
                     /locus_tag="OQP62_004393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1723758.1"
                     /translation="MSHPKRLLILCMLCGSPKTSAGELARITGLSPSATSQHLARMRE
                     EGLIDSQRDAQRIHYFIKNEAVNTLIATLKNLYCP"
BASE COUNT          415 a          425 c          401 g          428 t
ORIGIN      
        1 ctggttaaca gattaatata attaatcgag ttatgctgtg tatatctgta tgaactttag
       61 gatctggaaa tataatcaat aatcgcatac aataccgcct gtaatagttt ttgttttctg
      121 cgttaaaagg tttttattga tatgaatttg atgttacaga acttaaataa tatccgcacg
      181 ctgcgcgcta tggctcgcga attctccatt gatgttcttg aagaaatgct cgaaaaattc
      241 agggttgtca ctaaagaaag acgcgaagaa gaagaattgc agcaacgcca gcttgccgag
      301 aagcaggaga aaattaatgc ctttctggag ctgatgaaag cagacggtat taacccggaa
      361 gagttatttg ccatggattc agcaatgccg cgttctgcta aaaagcgcca accgcgtccg
      421 gcaaaatatc gttttactga tttcaatggc gaagaaaaaa cctggaccgg acaaggtcgt
      481 acgcctaaac cgattgccca ggcgctggcg gcggggaaat ctctggatga tttcttaatc
      541 taatcacgga taacctttaa cagatggcgc tgcgtttcct gtctctatta accgggattc
      601 agggaacgtt gcgccatgct cattttgata aatcagcaca cgccaaaatc gcccttttcg
      661 caataggggg tgacatctgc cgctttgagg atcaattttt cgcccggctc attaccgacc
      721 tgtaccgcga caatatgatc ctcgttgact tcaatcactt tcagtttcgg ccccccccat
      781 tcggggctgt acgatatcgc ctggtgtgaa catcacgtcc tcccgttgaa caatggtata
      841 aacccgcctt cagtctacta cacacttacc gacgcgcggt gaaagtaccg cttaatgagt
      901 acgggtattc cagggcattt tttccagtag tcgcgccatt ccgcagaagc cggttatgcc
      961 tgccagcatt aacccggccc cgacaaaacc gctaatgagg aaaaagccgc cgtggaccgt
     1021 atagcccaga atcaccccaa gcaacgtcaa cccgccggcg gcgatttgca cctgacgcat
     1081 cagcggcaac ggttgcgatt tgtcttctgt gacgggcaat cctgccgctt tccatccgtc
     1141 gataccgcct tccagtaaac tgacttgagc aggggcggca atggcctgta gttttgctgc
     1201 attgctgctg gttcgtttac ctgactgaca gtgaaaaata atctgttccg ctcgcaggtt
     1261 ggcgggcaaa tcgccctgtt caagccggga aagcggcgcc agttgcgcat gtggaatatg
     1321 ctcgcgcaga tattcatcgg cgtcgcgcac atcaatcagt ttcgcgcctt gcgctatcag
     1381 cgcttgcgcc tcacgggggg aaactatccc aatggacatc gtgcctcctt atggacaata
     1441 gagattcttt aacgtggcga taagcgtatt aaccgcctca tttttaatga aatagtgaat
     1501 gcgctgggca tcgcgttgac tatcaatcag cccttcttcc cgcatccgcg ccagatgctg
     1561 cgacgtcgcg gaggggctta gcccggtaat gcgcgccagt tcgcctgcgc tggtttttgg
     1621 tgaaccgcaa agcatacata aaatcagtaa tctttttggg tggctcatc
//
LOCUS       DAJVSD010000382         1641 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.385, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000382 DAJVSD010000000
VERSION     DAJVSD010000382.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1641
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.385"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            99..338
                     /locus_tag="OQP62_004394"
     CDS             99..338
                     /locus_tag="OQP62_004394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723759.1"
                     /translation="MVPAFFLPACLQRSDMELNNEYQNYEDEDDESADDLPPSHHPRS
                     FQSIIGWLYDKAVSGIAGIESAEMLAARYLEDAKG"
     gene            416..1291
                     /locus_tag="OQP62_004395"
     CDS             416..1291
                     /locus_tag="OQP62_004395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017465694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HCS1723760.1"
                     /translation="MTSDKTLKQAISNITIWRKGEQRAPHKPLLLLYVLSHYRQGHDR
                     LFDYGSEIHEQLLDLLERYGPQRREQRPDMPFWRLKGDGFWELQNAEFCSTSGSRQPP
                     KRELIEYNVAGGFDAVNFALVTKKRKLIDTLAQQILEAHFPTSIQEDIADEMGFDIRT
                     SFRQRDPKFRQAVLRAYNYQCAVCGFNMRHDNAPIALEAAHIRWKQHHGPCEVPNGLA
                     LCAIHHKAFDRGSIGLDENMRVVVSDAVNGGGVVQRLFWDFAGKEIALPPVKENYPGE
                     RFVEWHRKEVFRGEH"
BASE COUNT          409 a          392 c          428 g          412 t
ORIGIN      
        1 tcgccatttg ttttaatctg taaggagatg atttgtagct acaaatcttt tcaaccccat
       61 atcatcccat tgaacctccg gccggaaccg tctttacgat ggttccggcc ttctttttac
      121 ctgcctgcct acaaaggagt gatatggagc tgaataacga ataccaaaac tacgaagacg
      181 aggacgacga aagcgctgac gacctccctc catcccacca cccgcgctct ttccagtcca
      241 tcatcggttg gctctacgac aaagcagtca gtggtatcgc aggcatcgaa tccgctgaaa
      301 tgcttgccgc ccgttatctt gaggacgcga aagggtgatg cacagctcgc cgcccgcacc
      361 atgatccact gggagagcat catcgcaact atgtgctcat gaattcttca atgtaatgac
      421 ctctgacaaa accctaaagc aagcgatatc aaatattact atttggcgca aaggcgaaca
      481 gcgagcgccg cataagccgt tattgctgtt atatgttctc tcgcactatc ggcagggtca
      541 cgatcgtctg tttgattatg gttctgaaat tcatgagcaa ttgctggatt tgctggagcg
      601 ctatgggcca cagcgccgtg aacagcgccc ggatatgccg ttctggcgtc tgaagggcga
      661 tggtttctgg gaattgcaaa acgcggaatt ctgctcaacc agcggtagcc gccagccacc
      721 taaacgtgaa ctcattgaat ataatgttgc tggtgggttt gatgccgtca atttcgcgct
      781 ggtaacaaaa aaacgtaagc taatcgacac gctggcgcag cagatccttg aggcgcattt
      841 tccgaccagt attcaggaag acatcgctga cgagatgggt tttgatattc gcacctcttt
      901 ccgtcaacgc gatccgaagt ttcgccaggc ggtgctacga gcttacaatt atcaatgtgc
      961 ggtctgcggc ttcaatatgc gccacgacaa cgcccctata gcccttgaag cagcccatat
     1021 cagatggaag cagcatcatg gtccttgtga agtacctaat ggcctggcgt tgtgcgcaat
     1081 ccatcataaa gcgttcgatc gtggttcgat tggcctggat gaaaatatgc gcgtagtggt
     1141 ttccgacgcg gtgaatggtg gcggagtggt acagcggttg ttctgggatt ttgcggggaa
     1201 agagatcgcg ttgcccccgg ttaaagaaaa ttatccgggt gagcggtttg tggaatggca
     1261 taggaaagag gtgttcagag gagagcattg atctggggga gtattttgag tgtggtatac
     1321 gttatctgtt aaaaatagct ccacatcaaa agcatcgaag taatcggcca cggttctcgc
     1381 actatggtct gtagcgcgct ggtggagtca cacctgtagt caggcgacgc gtagagcgcc
     1441 agatgagcca tcatgagcgc aagcggaatt tatgaggcgc ggcatcttaa agagcacagg
     1501 gagattgtaa gtagcccgat attgctggct tttgcttatc ttgctgacgg gattcgtcgt
     1561 atgaagcatg agaattacct catgttttat ataaggattc aacaccatat caaaaccggt
     1621 agctctcaac ctttcaaggc t
//
LOCUS       DAJVSD010000383         1622 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.386, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000383 DAJVSD010000000
VERSION     DAJVSD010000383.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.386"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(126..1532)
                     /gene="gndA"
                     /locus_tag="OQP62_004396"
     CDS             complement(126..1532)
                     /gene="gndA"
                     /locus_tag="OQP62_004396"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HCS1723761.1"
                     /translation="MSKQQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIA
                     ENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLEKGDIIIDGGN
                     TFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKDAYELVAPILTKIA
                     AVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLSNEELANT
                     FTEWNNGELSSYLIDITKDIFTKKDEDGNYLIDVILDEAANKGTGKWTSQSALDLGEP
                     LSLITESVFARYISSLKAQRVAASKVLSGPKAQPAGDKAEFIEKVRRALYLGKIVSYA
                     QGFSQLRAASDEYHWELNYGEIAKIFRAGCIIRAQFLQKITDAYAENAGIANLLLAPY
                     FKKIADEYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGA
                     HTYKRTDKEGIFHTEWLE"
BASE COUNT          421 a          422 c          380 g          399 t
ORIGIN      
        1 tcagattatc ttcattacga taaacacaga ttattaagtt aatattaagc aaaagcgata
       61 aatcaataag aatagagata aaaaaaagcc cagtattaaa ccgggcttaa acaagcttgc
      121 agaaattatt ccaaccactc ggtatggaaa atgccttctt tatcagtacg tttataggtg
      181 tgcgcaccaa agtagtcacg ctgcgcctga attaagttag ctggcagtac tgcggcgcga
      241 tagctgtcat agtaggccac tgccgcagag aatgtcggca ccggaatgcc attctgcacc
      301 gcgtaagcca caacatcacg cagcgcctgc tggtactcat cagcaatttt cttgaagtaa
      361 ggcgctaaca gcaagttagc gataccggcg ttttctgcgt aagcatcggt gatcttctgc
      421 aggaactgag cgcgaatgat acagcccgca cggaaaatct tagcaatctc gccgtagtta
      481 agctcccagt gatattcatc agacgcggcg cgtagctgcg agaagccctg cgcataggag
      541 acgatcttgc caagatacag cgcgcgacgc actttctcga taaattccgc tttgtcgccc
      601 gccggctgcg ctttcggccc ggagagcact ttagatgcgg caacacgttg cgctttcagc
      661 gaagagatgt aacgcgcaaa gacggattcg gtaatcagcg acagcggttc gcccagatcc
      721 agcgcgctct ggctggtcca tttaccggtc cctttgttgg cggcttcatc aagaataaca
      781 tctatcaagt aattaccgtc ttcatctttt ttagtgaaga tgtctttagt gatgtcgatc
      841 agataactgc tcagctcgcc gttattccac tcagtaaaag tgttcgccaa ctcttcattg
      901 ctgagattca ggccgccttt cagcaaggag taagcttcag cgataagctg catatcgcca
      961 tattcaatac cattgtggac catcttaacg tagtgacccg cgccatcggc gccgatatag
     1021 gtcacgcacg gttcgccatc ttctgccaca gcagcaatct tcgtcaggat cggcgccacc
     1081 agttcatagg catctttctg accgccaggc atgatagatg gccctttcag cgcgccctct
     1141 tcaccaccgg aaacaccggt accgataaag ttaaaacctt ccgcagacag ctcgcgattg
     1201 cgacggattg tgtcctggaa gaaggtgtta ccgccatcaa taatgatatc gcctttttcc
     1261 agatacggtt tcagcgaatc gatagctgca tcagtacctg cacccgcttt caccattaac
     1321 aggatacgac gaggcgtttc gagggattca acaaactctt tcaccgtgta ataaggcacc
     1381 agctttttgc cgggattctc ggcaatcact tcttcggtct tttcacggga gcggttgaaa
     1441 acggagacgg tataaccacg gctttcgatg ttgagcgcga ggttgcgccc catcactgcc
     1501 ataccgacga cgccgatctg ttgcttggac attacatact cctgtcaggt gtggaaaccc
     1561 tgccacaaac ggtcatggca ggttaaaggt gaatagtatg ttaactcaaa ggtatgatat
     1621 ta
//
LOCUS       DAJVSD010000384         1618 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.387, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000384 DAJVSD010000000
VERSION     DAJVSD010000384.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1618)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1618)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1618
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.387"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(88..1617)
                     /locus_tag="OQP62_004397"
     CDS             complement(88..1617)
                     /locus_tag="OQP62_004397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004940055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HCS1723762.1"
                     /translation="MWQPGDGLRKIKYKYHVCLIVIFSVLIRLLFLTDRYLWCDEASS
                     VLISRHSVDNLLFHAAFDVHPPLYYLLLHDWIILLGDSIAAVRSLSLLFGILTVVLVI
                     ALTRWLANERTALLAGWFAALMPMAVHYSQETRMYALMGMLTLAAALALMMWIKTPTH
                     NRYLVAYALLMTFSFYTHYFTLFTLIAHWIAVTILSCQSHKTACYLKLPGWWFANLAI
                     AVAYLPWLPVLFNLLTHLAQLRAGNDIGWIPPVTWRDLPAMYWHFFTGNNGQGFPSFI
                     LWLAVGGFIGTVGRISLYNGEYERYQLILFCNLVIPVMLVFIISWWMPLFIDRYFFFS
                     SLSIPPLLAVLLTRAKKAVCGFWFILFTLLFGYGSYHNNPEHIDEFKPLVNYINTRHQ
                     PNDAVVVSKMFDYLSYVYYNKRDYRTFLYTPPNAHGTSGRPNAYGFGSLFYAQADQTY
                     IDTLTTLSKSYHRVWLVSGGNFSQDYPLPSEWQNIAKFRSGRFQVQLFVIPTQQARQM
                     Q"
BASE COUNT          500 a          347 c          374 g          397 t
ORIGIN      
        1 gtttttgaag cgtttggctg gaccttactt ttaggcggtc tggcagtggc agtactgttt
       61 atcactgcac tggatagaaa acggtaatca ttgcatttga cgcgcctgtt gagttggtat
      121 tacaaataat tgtacctgaa atctaccact tctgaatttt gcgatatttt gccattctga
      181 cggcaagggg taatcctgac tgaagttacc gccgcttacc aaccagacac gatggtaact
      241 ttttgaaagc gttgtcagag tatcaatata tgtctgatcg gcttgcgcat aaaacagtga
      301 accaaagcca taggcattcg gtcttcctga tgttccgtgt gcgttaggtg gtgtataaag
      361 aaacgtacga taatctcgct tattataata cacataactt aaataatcga acattttact
      421 gactaccacg gcatcattag gctggtgacg ggtattaata tagtttacca gtggtttaaa
      481 ctcgtctatg tgctcagggt tattatgata tgaaccatag ccgaataata aggtgaataa
      541 gataaaccag aagccacaaa ccgctttttt tgcgcgggta agtaataccg cgagcagggg
      601 aggaatgctc agcgatgaga agaagaaata acgatcgata aataacggca tccaccagga
      661 aatgatgaag accagcatta cagggatgac cagattacaa aataatatca gctgatatct
      721 ttcatattct ccgttgtata aagatattcg ccccacagta ccgataaaac ctcccacagc
      781 cagccacaga atgaacgacg gaaaaccctg tccgttgttt ccggtaaaaa aatgccagta
      841 catcgcaggc aggtcacgcc atgttacggg gggaatccaa ccgatatcat taccggctct
      901 caactgcgcc agatgagtca gtaaattaaa caatacgggc aaccagggga gataagcgac
      961 agcaatcgcc aggttagcaa accaccagcc aggaagttta aggtagcagg ccgttttatg
     1021 gctttggcag gataatattg ttactgcgat ccagtgggca ataagtgtaa atagggtgaa
     1081 ataatgggtg taaaagctga acgtcataag taaagcatac gcgacaagat agcgattatg
     1141 ggtgggtgtt tttatccaca tcatcaatgc taacgcggca gcgagcgtta gcattcccat
     1201 taacgcgtac atgcgcgttt cttgactgta atgaactgcc atcggcatca gggcggcgaa
     1261 ccatcccgcc aataaggctg tacgttcatt tgccagccat cgcgtaagcg cgataaccag
     1321 cacaactgtc aggatcccaa agagtagact gagagagcgt accgctgcaa tgctatcacc
     1381 caataatatg atccagtcat gcagtaacag ataataaagc gggggatgca cgtcaaaagc
     1441 ggcatggaag agcagattat ctacgctatg tcgactaatc agcacgctgg acgcttcgtc
     1501 acaccaaagg tagcggtcag ttaaaaacag caaccgtata aggacggaga atataacaat
     1561 gagacaaaca tgatatttat actttatttt tcttaaccca tcgccgggct gccatatg
//
LOCUS       DAJVSD010000385         1605 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.388, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000385 DAJVSD010000000
VERSION     DAJVSD010000385.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.388"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..358)
                     /locus_tag="OQP62_004398"
     CDS             complement(<1..358)
                     /locus_tag="OQP62_004398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001670388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723763.1"
                     /translation="MPRKIMLVFFLFISEFCYAQAVVSEFNLSDINRGGMTKAQAEKL
                     LIIALKYQKYDLSLDGVFVDGDLQDKHGNPPHPGYYDFSLGYDTPTAGAIDYWGLFSV
                     SSQTGDIWEINKCERII"
     gene            complement(343..813)
                     /locus_tag="OQP62_004399"
     CDS             complement(343..813)
                     /locus_tag="OQP62_004399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000528842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HCS1723764.1"
                     /translation="MGNYDKACNNVGAVRFVQEHMKVCEIIAKELDVPVENILGLAAA
                     ESQYGTGRIARGYNNYFSLQAPASFQSGRVHPKDSNKTWVAIFSSFSVCARSFAVKYG
                     DAVRGKKDALVFSEALVAAGFNSGSHITGGTDNYARITAGIIIMVGRRIACPVK"
     gene            complement(917..1390)
                     /locus_tag="OQP62_004400"
     CDS             complement(917..1390)
                     /locus_tag="OQP62_004400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016506348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723765.1"
                     /translation="MFSKIVSLLLFTILSVSSYAQVLVSNIPVFDLAKLNQEGLAETQ
                     AQALLVLSLKNKKYNITLPSVFMDEALKNDQGKPFHSGYYSFGVGYDSPSVGATDIWG
                     LFSVSPKTGDIWEEYSCERISFPALQKIQQEIMKKTGATFASEVVQRRGLGCTDE"
BASE COUNT          485 a          399 c          259 g          462 t
ORIGIN      
        1 atataattct ctcacattta tttatttccc atatatcacc agtttgagaa cttactgaaa
       61 acagccccca ataatctatt gctccggcag tcggtgtatc atagccaagg ctaaaatcat
      121 aatatcccgg atggggagga tttccgtgtt tatcctgcaa atcaccgtca acaaaaacgc
      181 catccagcga taaatcatat ttttgatatt taagtgcaat aatgagtagt ttttctgcct
      241 gtgctttcgt cattccaccg cgatttatat ctgacaaatt aaattcagat acaaccgctt
      301 gggcataaca gaactcagat ataaagagaa aaaaaacaag cattatttta cggggcatgc
      361 tattctccgc ccgaccataa taattattcc agcagttatc ctggcgtaat tatccgtacc
      421 accagtaata tgagatcctg aattaaaccc agcagctacc agagcttcag agaagaccag
      481 agcatctttt ttcccccgaa cagcgtcacc atacttgaca gcaaaagatc gcgcacaaac
      541 tgaaaacgaa gaaaaaatag ccacccaagt tttgttacta tcctttggat gaacccgacc
      601 tgactgaaat gatgcaggag cctggagaga aaagtaatta ttatatcccc tggcaatacg
      661 acctgtacca tattgacttt cggcagcagc aagacccagt atattctcta ccggtacgtc
      721 aagctctttt gcaattatct cacaaacctt catgtgctcc tggacaaatc ttaccgcacc
      781 cacgttatta cacgctttat cataattacc catttcttca ttccttagca gatgttttta
      841 aaacctccat gctcattatt tctccgccag ccttgccctt gcaggtaacg tatgcccggt
      901 agatccaact accccgctat tcatctgtac agcccagccc tcgccgttgc accacttcac
      961 tggcaaatgt cgcgccagtt tttttcatta tttcttgttg tattttttgt agcgccggaa
     1021 atgatattct ctcacatgaa tattcttccc agatatcacc tgttttcgga ctgacggaaa
     1081 ataatcccca gatatccgta gcaccaacag aaggagagtc atagcccaca ccaaagctat
     1141 aatatccaga atgaaatggc ttaccctgat cattttttaa ggcctcgtcc ataaaaacgc
     1201 taggcaatgt aatattatat tttttatttt ttaatgataa aaccaataat gcctgagcct
     1261 gtgtctcggc aagcccttcc tgatttaatt tagccaaatc aaacaccggg atatttgata
     1321 caagaacctg ggcataactg ctcacggata aaatagtaaa caaaagcaat gacactattt
     1381 tactgaacat gccattctcc gcttaaccat accaatcata gccaccagtt cactggcgta
     1441 tccggtatgt cctccattac tacttttacc tgaattaaat cgtgactcaa tcaatgcttg
     1501 tgcaaatttt ttaggatcgt ttatctttct gactgcacta ccaaacctga tggcgaatga
     1561 tttcgcgcaa tttaaaaaag acgtataggt ggcaacccac acgtc
//
LOCUS       DAJVSD010000386         1598 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.389, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000386 DAJVSD010000000
VERSION     DAJVSD010000386.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.389"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..418
                     /locus_tag="OQP62_004401"
     CDS             <1..418
                     /locus_tag="OQP62_004401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000954687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="S-adenosylmethionine:tRNA
                     ribosyltransferase-isomerase"
                     /protein_id="HCS1723766.1"
                     /translation="NRKIQTKCVEEVTINEEYYEVPQATADIINTAKQNGGRIFAVGT
                     TVTRCLESAYSREHNCLKASSGWTALYIHPGYQLKVVDCLLTNLHQPKTTHMVLTGQF
                     AGVDLLMKAYASEDIQSCQFDMFGDCMLIIQDEGQG"
     gene            complement(470..592)
                     /locus_tag="OQP62_004402"
                     /pseudo
     CDS             complement(470..592)
                     /locus_tag="OQP62_004402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418669.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
     gene            complement(586..714)
                     /locus_tag="OQP62_004403"
                     /pseudo
     CDS             complement(586..714)
                     /locus_tag="OQP62_004403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460510.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
     gene            868..1059
                     /locus_tag="OQP62_004404"
                     /pseudo
     CDS             868..1059
                     /locus_tag="OQP62_004404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002211098.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1060..1167
                     /locus_tag="OQP62_004405"
                     /pseudo
     CDS             1060..1167
                     /locus_tag="OQP62_004405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000253166.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1493 family protein"
     gene            complement(1282..>1598)
                     /locus_tag="OQP62_004406"
     CDS             complement(1282..>1598)
                     /locus_tag="OQP62_004406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001681585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723767.1"
                     /translation="HMFLHEWTTEQLVKDYGKLNPLSSEEQAITMGLSAAEVKFLTAL
                     SDLELKKIRERGQLESLRHELRISRHDLQGKRVQDKRVQINRIRAASRQGRDQTYGPE
                     VF"
BASE COUNT          442 a          347 c          353 g          456 t
ORIGIN      
        1 caacagaaaa atacaaacaa aatgtgtaga ggaagtgact atcaacgaag aatactacga
       61 ggttccacaa gctacagcgg atatcattaa tactgcgaag caaaatggcg gacgtatttt
      121 tgccgtagga actaccgtta cacgatgcct ggagtccgcg tattcgaggg aacacaattg
      181 cctcaaagca agttctggct ggactgcgct ttatatacat ccaggctatc aactgaaagt
      241 ggttgactgc ctgctaacga acttacatca gccaaaaacg acgcatatgg tgttaactgg
      301 tcagtttgct ggggttgatc tactcatgaa ggcctatgcc tcagaagata tccagtcatg
      361 tcagttcgat atgtttggtg attgcatgtt aatcatacag gatgaagggc agggatgaat
      421 aaaataaaac cggtacacat aatgctaccg gttttaccga gaataagcat caggggattc
      481 gggcaataac ctttatttcg aaatcaaagc cggccagcca ggtaacgcca acagcggtcc
      541 agttaggata agggggatag gcaaatatct cctgtttcac cgccatcacg tcgttaagtt
      601 gtagacggca tcattttcac gctttccaac accaatgaca gttaccgtga taatttcatc
      661 ttcgacgctg tagaccagtc tgtatcctgc accacacggc ttaattttgt acttaactgc
      721 ttgtatcgat taccaggaac gttaacagcg tgcgcaccag cttgccattg tctaattcaa
      781 gcacacgacg aacaaatgtg ttataacaat cctataaagt ggttgcattg ccaatgcata
      841 aagttaattt aatcaggaaa ttagagtatg gatacagttg aagagcttaa tagcacttat
      901 ttttatgccg gacgttcaaa tctgactgct agtcagttgc tgtttatgat tttctgcgaa
      961 aacactgcca atcagttggg tgttcaggat tttggggcga tagtgtctat tgtggctgga
     1021 ttgaatgttt tgcctacgcg gacaaaaccg cgtggtgcta agcatttgct taatccgttt
     1081 cgcaaaaacg atattcctca ggcgccggag ttcacgatag gtatgctcat tgcgtctgcc
     1141 agggctggtc gctggttgta tgactgattc acgcttgggg gctgctttcc gttctccatc
     1201 atcatggagc gcataatgta tattatgtta aatgcaccag aacaattaaa agacatgtta
     1261 aggcggctgg attcgtgcat gtcaaaaaac ttctggccca taagtttgat cccttccctg
     1321 ccgtgacgct gcgcgaattc tgttgatttg cacccgctta tcctgcacac gttttccttg
     1381 caagtcatgc cttgagattc ttagttcatg ccttaaggat tccagttgac ctctttctct
     1441 aatctttttt aattccagat cggaaagcgc agtaaggaat tttacttccg cggctgatag
     1501 tcccattgta atcgcttgct cttcagaaga aagaggattt aatttaccat aatccttgac
     1561 caactgctcc gtagtccatt catgtaaaaa catatggt
//
LOCUS       DAJVSD010000387         1591 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.390, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000387 DAJVSD010000000
VERSION     DAJVSD010000387.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.390"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            94..1032
                     /gene="pgtE"
                     /locus_tag="OQP62_004407"
     CDS             94..1032
                     /gene="pgtE"
                     /locus_tag="OQP62_004407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="omptin family outer membrane protease PgtE"
                     /protein_id="HCS1723768.1"
                     /translation="MKKHAIAVMMIAVFSESVYAESTLFIPDVSPESVTTSLSVGVLN
                     GKSRELVYDTDTGRKLSQLDWKIKNVATLQGDLSWEPYSFMTLDARGWTSLASGSGHM
                     VDHDWMSSEQPGWTDRSIHPDTSANYANEYDLNVKGWLLQGDNYKAGVTAGYQETRFS
                     WTARGGSYIYDNGRYIGNFPHGVRGIGYSQRFEMPYIGLAGDYRINDFECNVLFKYSD
                     WVNAHDNDEHYMRKLTFREKTENSRYYGASIDAGYYITSNAKIFAEFAYSKYEEGKGG
                     TQIIDKTSGNTAYFGGDAAGIANNNYTVTAGLQYRF"
     gene            1218..1364
                     /locus_tag="OQP62_004408"
     CDS             1218..1364
                     /locus_tag="OQP62_004408"
                     /inference="COORDINATES: protein motif:HMM:NF020812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723769.1"
                     /translation="MYSLWDCFNLWADIGNEKDRPGDYSLSEYPVHQLPTNHLVDGLV
                     AIGS"
     gene            1380..1523
                     /locus_tag="OQP62_004409"
     CDS             1380..1523
                     /locus_tag="OQP62_004409"
                     /inference="COORDINATES: protein motif:HMM:NF020812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723770.1"
                     /translation="MDGWGSYVSNILMQDCAGSGGLWYTYGKTFTYISVIDTKTLTLT
                     NCL"
BASE COUNT          446 a          307 c          398 g          440 t
ORIGIN      
        1 tctggcgtaa taaatgtact cttgtccgac gatttgacaa gatgaaaact tcatcacctc
       61 tccagattac atctgaatat gaggacaaga gaaatgaaaa aacatgctat tgcagtaatg
      121 atgatcgccg tattttctga gtcggtttat gcggagtcta ccttatttat tccggacgtc
      181 tctcctgaga gcgtcacgac atccctttct gtgggggtgt taaacggtaa atccagggag
      241 ctggtttatg ataccgacac cggacggaag ctgagtcaac tggactggaa aataaaaaat
      301 gtcgccacgt tgcaggggga tttatcatgg gaaccctatt cgttcatgac gctggacgcc
      361 cgcggctgga cgtctttggc gtcgggatcg ggtcatatgg ttgaccatga ctggatgagc
      421 agtgagcagc caggctggac cgatcgttca attcatccgg acaccagcgc caactatgct
      481 aatgaatacg atttgaacgt gaaaggttgg ttattgcagg gagataacta caaggcgggc
      541 gtaacagcgg gctatcagga aactcgtttt agctggacgg caagaggcgg gtcttatatt
      601 tatgataatg gtcgatatat tggtaacttt cctcatggcg tgcgcggtat aggttatagc
      661 cagcgtttcg aaatgcccta tatcgggctg gcgggtgatt atcgtattaa tgactttgag
      721 tgtaatgtac tgtttaaata cagcgactgg gtaaatgcgc atgataatga cgaacactac
      781 atgcgaaaac ttaccttccg tgaaaaaacg gaaaattcac gatattatgg cgcgtctatt
      841 gacgccggat attatattac cagtaatgca aaaatctttg ctgagttcgc ttacagtaaa
      901 tatgaagaag gtaagggcgg tacgcaaatc atagataaaa ccagcggtaa tacggcgtat
      961 tttggtggcg atgccgcagg tatagctaat aataactata cggttaccgc ggggttgcag
     1021 taccgcttct agaccacatc gggatgtcat cggtcataac cggccgatga cgactttttg
     1081 ctgaacgtgt ggcatgcccg gtgatattgt gtttacctca tatagatctg gcgagtttgg
     1141 cgttaagacg tggcaaggaa cagtagaggg ggacctcatc cagatgttat aaacttcaat
     1201 tcagaaagtt actttccata tactctttgt gggactgctt caacctttgg gcagatatcg
     1261 gaaatgaaaa agatagacca ggcgactatt cgctatcaga atatccggta caccaactac
     1321 caacaaatca tttagtcgat ggtctcgttg ccattggttc atagagtgtt ggtcttggta
     1381 tggatggctg gggaagttat gtatcgaaca ttcttatgca agattgcgca gggtctggtg
     1441 gtctatggta cacatatggg aagacattca catatatttc tgtaatcgat actaaaactt
     1501 taacactaac taattgtttg tagaaagtgg ttgcattatt aatggtttga gactcattga
     1561 cataaaacaa acaccatctg gtaatctgtc a
//
LOCUS       DAJVSD010000388         1559 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.391, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000388 DAJVSD010000000
VERSION     DAJVSD010000388.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.391"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..634
                     /locus_tag="OQP62_004410"
     CDS             <1..634
                     /locus_tag="OQP62_004410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="two component system response regulator"
                     /protein_id="HCS1723771.1"
                     /translation="EYKILLVDDHEIIINGIMNALLPWPHFKIVEHVKNGLEVYNACC
                     AYEPDILILDLSLPGINGLDIIPQLHQRWPAMNILVYTAYQQEYMTIKTLAAGANGYV
                     LKSSSQQVLLAALQTVAVNKRYIDPTLNREAILAELNADTTNHQLLTLRERQVLKLID
                     EGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRLIEY"
     gene            813..1541
                     /locus_tag="OQP62_004411"
     CDS             813..1541
                     /locus_tag="OQP62_004411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HCS1723772.1"
                     /translation="MSYSIGEFARLCGINAATLRAWQRRYGLLKPQRTDGGHRLYSDD
                     DIRQALSILDWVRKGVPISQVKPLLSRPVIRLGDNWITIQETMLQHLHEGRIDALRQL
                     IYDCGREYPRAELVTHLLRPLRSKVSAHLPAVMTLREILDGIIIAYTSFCLEGDRKAP
                     GNNAFISGWHLSDHCEIWLEALTRTGQELRLNVLPSPPAVLAPELFAQRKWFLVTTGK
                     LTAGQKKQLAQWRNVVASLEVITL"
BASE COUNT          423 a          369 c          364 g          403 t
ORIGIN      
        1 agaatataag atcttattag tagacgatca tgaaatcatc attaacggca ttatgaatgc
       61 cttattaccc tggcctcatt ttaaaattgt agagcatgtt aaaaatggtc ttgaggttta
      121 taatgcctgt tgcgcatacg agcctgacat acttatcctt gatcttagct tacctggcat
      181 caatggcctg gatatcattc ctcaattaca tcagcgttgg ccagcaatga atattctggt
      241 ttacacagca taccaacaag agtatatgac cattaaaact ttagccgcag gtgctaatgg
      301 ctatgtttta aaaagcagta gtcagcaagt cctgttagcg gcattgcaaa cagtcgcagt
      361 aaacaagcgt tacattgacc cgacgttgaa tcgggaagct atcctggctg aattaaacgc
      421 tgacacgacc aatcatcaac tgcttacttt gcgcgagcgt caggttctta aacttattga
      481 cgaggggtat accaatcatg ggatcagcga aaagctacat atcagtataa aaaccgtcga
      541 aacacatcgg atgaatatga tgagaaagct acaggttcat aaagtgacag agttacttaa
      601 ctgcgcccga agaatgaggt taatagagta ttaaccaggg gcatccgatg gtattaagca
      661 ttggtcatat tttgatgagc cttacgccac gcagtattgc tcatcatcga caaaatccat
      721 acggatgccc tggtatgccg caccatttat cactacctta gtcttcattt aatcatgata
      781 tagtagaatc cccttattta acgggcttta ccatgtcgta ttctatcggc gaatttgcca
      841 gactatgcgg tatcaatgcc gccacgctaa gggcatggca gcgacgctat ggtttattga
      901 aaccgcagcg tactgatggc gggcatcgct tatacagcga tgacgatatt cgacaagcgc
      961 ttagcatcct cgactgggtg agaaaaggcg taccgataag tcaggtcaaa cccttactgt
     1021 cgcgtccggt cattcgcctg ggcgataact ggataacgat tcaggagacg atgcttcaac
     1081 atctccacga agggcgaatt gacgcgctgc ggcagttgat ttatgactgt ggccgggaat
     1141 atccccgcgc agaactggtg acccatttat tgcgtccgtt gcgcagcaaa gtgtccgcgc
     1201 atcttcccgc cgtgatgacg ctgcgcgaaa tattggatgg catcattatt gcctacacct
     1261 ctttttgcct tgaaggcgac agaaaagcgc ctggcaacaa tgcttttatt agcggatggc
     1321 atctctcgga tcactgtgaa atctggctgg aagcgttgac tcgtaccgga caagagctgc
     1381 ggctcaatgt gcttccctct ccaccagccg ttctggcgcc cgagctgttc gcccagagaa
     1441 aatggttcct ggtgaccacc ggcaagctca ctgccgggca gaaaaaacag cttgcccagt
     1501 ggcgcaacgt ggtcgcttcg ctggaggtta tcacactata agcgctgaaa tagatttct
//
LOCUS       DAJVSD010000389         1528 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.392, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000389 DAJVSD010000000
VERSION     DAJVSD010000389.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1528
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.392"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            141..>1528
                     /locus_tag="OQP62_004412"
     CDS             141..>1528
                     /locus_tag="OQP62_004412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000964108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="HCS1723773.1"
                     /translation="MAIFHLDFKIVKRSEGRSSVAKAAYHARTRITDERTGDTYDYSR
                     RTDLYGHFILAPANAPEHIVKDSTALWNEVEKVERQNNGQTSRYFDVAIPTELNNDDK
                     KKLVLEYCQKNFVDKGMIADIAFHDLDSDNPHAHVMLTLKAIGPEGFGKKERSWNDRK
                     MSVLWRESWASMANSYLEAAGSSERIDHRSLQAQHEEALEKAAAALDNEEQALWLAKA
                     AETNRPAMKRIHSAKWRSKAAQEQRAAEQAVRDAAKQEAVEVYKTFSELDLEIVVDVR
                     SFTITHLAEPEEIVLPETRSSSSTNEEQRPLLVAPAPDTRLRGVKSYRDKTKVSKVVA
                     CIPPSISISDSGTNTILKTSTSQNPNRASRSAPDHERKDKTTPRQDNIFKRFTTLVID
                     FFKEKFVWPRSSRVKHDPVSTEHDKRIAENYVFDEVLGHHVSRAEYEKQAKFNSDTYK
                     PTPDEIRRFPSRP"
BASE COUNT          487 a          321 c          318 g          402 t
ORIGIN      
        1 ggctaacacc gtttccttcg gaaacaaggt caacgtcaac accagagttt ttcttgcgaa
       61 aaactaaaac cagcatagtc gcattggaga gttatatttt agtttgatat ttaaacttat
      121 attgaggttg tttttattgt atggctattt ttcatcttga ttttaaaatt gtgaaacgtt
      181 cagaaggcag gtcttccgtt gcgaaggctg cctatcatgc tcgtacaagg ataacagatg
      241 aaagaacagg tgatacctat gattatagtc gccgtactga tttgtacggg catttcatat
      301 tagctccagc taacgcacca gaacacatcg taaaagactc tacagcattg tggaatgaag
      361 tggaaaaagt tgagcgccag aacaatggtc aaacatcccg ttatttcgat gttgctattc
      421 ccaccgagtt aaacaatgac gacaagaaaa aacttgtcct tgagtattgt cagaaaaatt
      481 tcgttgataa aggcatgatt gccgacatcg cttttcatga tcttgatagc gacaacccac
      541 atgctcacgt tatgttgacg ttaaaagcca taggcccgga aggttttggt aaaaaagaaa
      601 gaagctggaa cgacagaaaa atgtctgtgt tgtggcgtga gtcatgggca tctatggcta
      661 acagctatct cgaagccgca ggttcatcag aacgtattga ccatcgttcc cttcaggccc
      721 agcatgaaga ggcattagaa aaagcggcgg ctgctctgga caatgaagaa caagcgctat
      781 ggcttgctaa agccgctgaa acaaaccgcc ctgcaatgaa acgtatccat agtgccaaat
      841 ggcgcagtaa agctgctcaa gagcaaagag ccgcagaaca ggctgttcgt gatgctgcca
      901 agcaagaagc cgttgaagtc tacaaaacat tcagcgaact tgatcttgaa atcgtcgttg
      961 atgtcagaag ctttacgatt acacatcttg ctgaaccaga agaaattgtt ttaccagaaa
     1021 cgcgatccag ctcttctaca aatgaagaac aaagaccttt actggtagca ccagctcctg
     1081 atactcgttt gcgtggagtc aaatcttacc gtgataaaac aaaagtcagt aaggttgttg
     1141 cttgtattcc gccatcaatc agtatttctg attctggtac aaatactatt ctgaaaacat
     1201 ccacctctca aaacccaaac agggcatcca gaagcgcccc tgaccatgaa agaaaggata
     1261 agactactcc acgtcaggat aatattttca aacgtttcac aactcttgtc atagatttct
     1321 tcaaagaaaa atttgtatgg cctagatcaa gcagagttaa gcatgatcct gtcagtacag
     1381 aacatgataa acgtattgct gaaaactatg tctttgatga agtattaggt catcatgttt
     1441 ctcgtgctga atatgagaaa caagctaagt ttaacagtga tacttacaaa ccaacacctg
     1501 atgagattcg acgtttccca agccgtcc
//
LOCUS       DAJVSD010000390         1521 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.393, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000390 DAJVSD010000000
VERSION     DAJVSD010000390.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1521
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.393"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            15..536
                     /locus_tag="OQP62_004413"
     CDS             15..536
                     /locus_tag="OQP62_004413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ricin-type beta-trefoil lectin domain protein"
                     /protein_id="HCS1723774.1"
                     /translation="MTLLSGKNTLVLCLSSILCGCTTNGLPAPYSINLSFPVITQNQI
                     NSGGYYINDAEQIRTTDGLCLDTGPDQQNRLTLRECKHVQSQLFSFHRDRITQGEKCL
                     DAAGQGTKEGTPIILYSCTGNDNQRWLTDDNKIKGKQSRKCLGTNSIIVRKGDPVVLA
                     DCDFSRALEFTIR"
     gene            727..966
                     /gene="msgA"
                     /locus_tag="OQP62_004414"
     CDS             727..966
                     /gene="msgA"
                     /locus_tag="OQP62_004414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence protein MsgA"
                     /protein_id="HCS1723775.1"
                     /translation="MFVELVYDKRNVEGLPSAREIILNELTKRVHQLFPDAQVKVKPM
                     QANALNSDCTKTEKERLHRMLEEMFEEADMWLVAE"
BASE COUNT          439 a          343 c          341 g          398 t
ORIGIN      
        1 agggtaataa ttgaatgact ttgctttcag gaaaaaacac actggttctc tgcctctcct
       61 ctattttatg tggatgtacg acgaacggct tacccgcacc ttatagtatt aatttgtcgt
      121 tcccggtcat tacacaaaac caaattaatt ccggtggtta ttacataaat gacgcggaac
      181 aaattcggac aactgatggt ctgtgccttg atacaggccc agatcaacag aatcgtttga
      241 cgctgcggga gtgtaaacat gtgcaatctc agcttttctc atttcaccga gacagaatca
      301 cgcagggtga gaaatgtctg gatgctgcag gacagggtac gaaagaaggc acgccaatca
      361 ttctttattc atgcacgggt aatgataacc agcgctggct cactgatgat aacaaaatta
      421 aggggaaaca gagccgaaaa tgcctgggca caaatagcat tattgtcaga aaaggcgacc
      481 ctgttgtgtt agccgattgc gattttagtc gcgccctgga atttaccatc aggtagcagg
      541 acaccgctgt gaagagagag ccgctaacct cttgacatga caacaggtta gcgaccttta
      601 cttccatgtg cgatcaattt actttacatc cgcaacgtta ggatgacaaa acggcggcta
      661 aaccttgaca ccggttatat acccagctta aatactggtc atccaaccag taaaaaggaa
      721 atggcgatgt tcgtcgaact cgtttatgac aagcgaaatg ttgaaggttt gccaagcgca
      781 cgcgaaatca tcctcaatga actcacaaaa cgcgtacatc aactttttcc cgatgcgcaa
      841 gtgaaagtta agccaatgca ggcgaacgca ttaaacagtg actgtacaaa aaccgagaaa
      901 gaacggctgc accgtatgct ggaagagatg tttgaagagg ctgatatgtg gctggtcgcc
      961 gaataacgtc ccctcctgcg aaagcgacat gtccgatcga aaacagcgcc ctgaggcgct
     1021 gtctgtgacg atataacgca aacgccacca ctcagaacat gtagcggaag ttggcgttta
     1081 tagcgtggtc aacatgctat ttgccaaatg ccgccagctc cagtcattgt cactgaacgt
     1141 tttgcccagt gccacacctg tacgccctat caacggatta tacgttttgt tgcgcatcga
     1201 cgctattggt cacggtttta cagtaaaaac ggtacctgtt ctcagactct tccggcgtca
     1261 gtgcaccgtt ataatgatga ggtctgacgc tattgtagcc gttcaagatg taaccattga
     1321 tttgtttggt tttcttgttc actaagttac ctgttttgtg ttgaggtgag aacatcgcct
     1381 ttaatcaggt ggccaaattt actatgtcac tacaagagtg agaatagatg aaatgtcacc
     1441 tccctcacag ggatataata atcctggtaa tgaaaaattt atgtttactt ataaagtacc
     1501 aatgatatcg aatctctctt t
//
LOCUS       DAJVSD010000391         1517 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.394, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000391 DAJVSD010000000
VERSION     DAJVSD010000391.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.394"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..763
                     /gene="hlyE"
                     /locus_tag="OQP62_004415"
     CDS             <1..763
                     /gene="hlyE"
                     /locus_tag="OQP62_004415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hemolysin HlyE"
                     /protein_id="HCS1723776.1"
                     /translation="KQEYSQEASVLVGDIKVLLMDSQDKYFEATQTVYEWCGVVTQLL
                     SAYILLFDEYNEKKASAQKDILIRILDDGVKKLNEAQKSLLTSSQSFNNASGKLLALD
                     SQLTNDFSEKSSYFQSQVDRIRKEAYAGAAAGIVAGPFGLIISYSIAAGVIEGKLIPE
                     LNNRLKTVQNFFTSLSATVKQANKDIDAAKLKLATEIAAIGEIKTETETTRFYVDYDD
                     LMLSLLKGAAKKMINTCNEYQQRHGKKTLFEVPDV"
     gene            complement(884..1315)
                     /locus_tag="OQP62_004416"
     CDS             complement(884..1315)
                     /locus_tag="OQP62_004416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HCS1723777.1"
                     /translation="MTIHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGAQ
                     GTNPEELIGAAHAACFSMALSLMLGEAGFTPTSIDTTADVSLDKVEAGFAITKIALQS
                     KVAVADIDASTFDQIIQKAKAGCPVSQVLNAEITLDYQLNA"
BASE COUNT          440 a          305 c          336 g          436 t
ORIGIN      
        1 taaacaggag tactcgcagg aagcttctgt tttagttggt gatattaaag ttttgcttat
       61 ggacagccag gacaagtatt ttgaagcgac acaaactgtt tatgaatggt gtggtgtcgt
      121 gacgcaatta ctctcagcgt atattttact atttgatgaa tataatgaga aaaaagcatc
      181 agcccagaaa gacattctca ttaggatatt agatgatggt gtcaagaaac tgaatgaagc
      241 gcaaaaatct ctcctgacaa gttcacaaag tttcaacaac gcttccggaa aactgctggc
      301 attagatagc cagttaacta atgatttttc ggaaaaaagt agttatttcc agtcacaggt
      361 ggatagaatt cgtaaggaag cttatgccgg tgctgcagcc ggcatagtcg ccggtccgtt
      421 tggattaatt atttcctatt ctattgctgc gggcgtgatt gaagggaaat tgattccaga
      481 attgaataac aggctaaaaa cagtgcaaaa tttctttact agcttatcag ctacagtgaa
      541 acaagcgaat aaagatatcg atgcggcaaa attgaaatta gccactgaaa tagcagcaat
      601 tggggagata aaaacggaaa ccgaaacaac cagattctac gttgattatg atgatttaat
      661 gctttcttta ttaaaaggag ctgcaaagaa aatgattaac acctgtaatg aataccaaca
      721 aagacacggt aagaagacgc ttttcgaggt tcctgacgtc tgatacattt tcattcgatc
      781 tgtgtacttt taacgcccga tagcgtaaag aaaatgagag acggagaaaa agcgatattc
      841 aacagcccga taaacaagag tcgttaccgg gctgacgagg ttatcaggcg ttaagctggt
      901 agtcgagggt gatttccgca ttcagaacct gcgataccgg acacccggct tttgctttct
      961 ggatgatttg atcgaaagtt gaagcatcaa tatctgctac cgccactttg ctttgtagcg
     1021 caattttggt aatggcgaag cccgcctcca ccttatcaag cgatacgtca gcggtggtgt
     1081 caatggatgt cggcgtaaat ccagcctctc ccagcatgag tgatagcgcc atggagaaac
     1141 aggccgcatg tgcggcgcca attaactctt ccgggttggt tccctgcgcg ccttcgaacc
     1201 gggtattgaa tccatacggt tgttgattaa gcacgccgct ttctgttgat acagtacctt
     1261 taccccgttt gatgtcgcct tcccagtgtg cctgaccttt cttatggatt gtcatttttg
     1321 ctctcctgtt ggctcaaaaa ataaagtata gactatgctg ataatctgcg ttgttcatgc
     1381 cgatggatgt agcatgttgt cgattacccg cacttcagat atagaaaata gttgtatgct
     1441 ttttcagtga tggatattaa accaacaggc ctccctttct ttaaagaata tatccctcct
     1501 tttatcctta ctttttc
//
LOCUS       DAJVSD010000392         1504 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.395, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000392 DAJVSD010000000
VERSION     DAJVSD010000392.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1504)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1504)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.395"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..1297)
                     /locus_tag="OQP62_004417"
     CDS             complement(<1..1297)
                     /locus_tag="OQP62_004417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HCS1723778.1"
                     /translation="MKYINHYRYLFVCFFLAILPFFALSFPGIREYVFDNFMVSAIYN
                     GVIIAIYITGSLCALFTILKNISAKDILIAQDASRKNSILSNLNQVLFAGEPKQCDFN
                     LLMELDDNVSTARNQRLSFIMSCSNVSTLVGLLGTFAGLSITIGSIGNLLSSPSDVGG
                     DNASNTLNMIVTMVASLSEPLKGMNTAFVSSIYGVVCAILLTSQSVFVRSSYSLVSTE
                     IKKLKIISNRSNNKQRSLRVESETLVEFKELFKAFFDNYLTVENLRTQDEEKKRVMLS
                     DSFVTLQNRLLDNSAKLEQLSTLIDGYLVSNNENTKKLVDGVITITSRLSEGNTLLAD
                     NNARLEAMSTIQNIIDKKNDSIMASVDKCYQESFSHGKTINDIAAGSADISHTLDGLR
                     KEMDEDMNNVHLALSDLSATDKKIIANTKEISAEMVSYRD"
     gene            complement(1294..>1504)
                     /gene="siiA"
                     /locus_tag="OQP62_004418"
     CDS             complement(1294..>1504)
                     /gene="siiA"
                     /locus_tag="OQP62_004418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SPI-4 type I secretion system auxiliary protein
                     SiiA"
                     /protein_id="HCS1723779.1"
                     /translation="SNLLIEMVIPQADISFSDSLRLGYERGIILMKEIKKIYPDVVID
                     MSVNSAASSTTSKAIITTINKKVSE"
BASE COUNT          482 a          298 c          254 g          470 t
ORIGIN      
        1 tatcacgata gctaaccatt tcagcactaa tctctttagt attggcaata atctttttat
       61 cagtagccga tagatcggat agcgctaaat gaacattatt catatcctca tccatttctt
      121 ttctcagccc atcgagagta tgagaaatat cggcactgcc agcggcaata tcgtttatgg
      181 tcttaccatg tgaaaaagat tcctgataac atttatcaac tgatgccatt attgaatcat
      241 tctttttgtc tataatattt tgtattgtac tcattgcctc cagtcgtgca ttattatcag
      301 caagcagggt attaccttca gataaacgag aggtaattgt tattacaccg tcaactaatt
      361 ttttggtatt ttcgttattg cttaccagat aaccatcaat cagcgtagaa agttgttcca
      421 gttttgctga gttatccaat agtcggtttt gcaaagtgac aaagctatct gatagcatca
      481 ctcgtttctt ttcttcatcc tgcgtccgta agttttcaac tgtcaggtag ttatcaaaaa
      541 acgctttaaa caactcttta aattctacaa gcgtctctga ttcaacccgc aggcttcgtt
      601 gtttattatt ggatctgtta cttatgattt ttaatttttt gatctctgta gaaacaaggg
      661 aataggagct gcgaacaaaa acactttgtg aggtcaggag tatggcgcaa acaacaccat
      721 agatagaaga tacaaatgcg gtattcatcc ctttcaatgg ttcagaaagc gacgctacca
      781 ttgtcacaat catattgagt gtattacttg cattatcacc gccaacatct gatggcgagc
      841 tcaataagtt cccgattgaa ccaatcgtaa tagacagacc cgcaaacgtc cccaacaggc
      901 caacaagcgt cgacacattg ctacagctca taataaatga caatcgttgg ttacgggcgg
      961 tagacacatt gtcatctaat tccatcagta aattgaaatc acactgtttg ggttccccgg
     1021 caaacaaaac ctgattgagg ttagaaagaa tgctattttt tctactggcg tcctgagcta
     1081 ttaatatgtc ttttgctgaa atatttttaa gaatagtgaa taatgcacac aaagaacctg
     1141 taatataaat ggcaataatg actccattgt aaattgcaga aaccataaaa ttatcaaaaa
     1201 catactctct tataccggga aaagataaag cgaaaaaagg gagtatggca aggaaaaaac
     1261 agacaaacaa atagcgataa tgatttatat atttcactct gacacctttt tattaatagt
     1321 cgtgataata gctttactcg ttgtacttga tgctgcggag ttaacactca tgtcaataac
     1381 tacatcagga tatatcttct taatctcttt catcaaaata attccccgtt catatcccag
     1441 tcgtaaagag tcagagaaag agatgtctgc ctgaggaata accatttcta tcaataaatt
     1501 acta
//
LOCUS       DAJVSD010000393         1481 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.396, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000393 DAJVSD010000000
VERSION     DAJVSD010000393.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1481)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1481)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1481
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.396"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..268
                     /locus_tag="OQP62_004419"
     CDS             <1..268
                     /locus_tag="OQP62_004419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723780.1"
                     /translation="GGITLGHTYHAKDYGPMLRSAGFTAIGTYEMPREGDVIIIQPYA
                     GGNPSGHMAIYDGAEWYSDFKQRDMWAGPGYRAARPSYTIYRKN"
     gene            268..786
                     /locus_tag="OQP62_004420"
     CDS             268..786
                     /locus_tag="OQP62_004420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjP/YqhG family protein"
                     /protein_id="HCS1723781.1"
                     /translation="MKTFSLVALILLLCSCSAPHHDSTQAVKQFYTSWMTTFMNDVNT
                     PDDTTALMQRYVAKEVIHRLALIQSLYEQEIVGADYFMYAQDYAPEWIPQLRVGKAHP
                     FLGGEKVDVLLATESTPIHLEVYTRWEEGRWKIYRVRDADKDYEQPIYDAGAITQAEA
                     WSAKVAPEYEKH"
     gene            complement(853..1464)
                     /locus_tag="OQP62_004421"
     CDS             complement(853..1464)
                     /locus_tag="OQP62_004421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001674229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HCS1723782.1"
                     /translation="MAVLFGLFGIFVFASFSPSYAWLYLGGLAAPFIYSIVFVYAIAA
                     WSIYSKYYPFLSLGRLSFVECFVPALALVCLTVLYNVFSGPEPWMAELSRQFFLHKFL
                     NTLVMCFLAPVAEEIIFRGFLLNSSIGWGRYSRVSGIIITSLAFAFMHTQYLFAVTFV
                     YLFVFSSILCVVRMRSRGLMIPITLHILNNAWVIFGLLFSATE"
BASE COUNT          472 a          348 c          342 g          319 t
ORIGIN      
        1 gggcggtatc acgctggggc atacatatca tgcgaaagat tatggcccaa tgttaagaag
       61 cgccggattc accgctattg gtacctatga aatgccgcgc gagggtgacg tcatcattat
      121 tcaaccttac gctggcggaa acccgagcgg tcacatggcg atatacgatg gcgcagagtg
      181 gtattcagat tttaaacaac gcgatatgtg ggccggcccg ggctaccggg cagccaggcc
      241 ctcatatacc atctacagga agaattaatg aaaacgttct cccttgtcgc gcttatcctg
      301 ttgctttgta gttgctctgc gcctcatcac gacagtacgc aggccgtgaa gcagttctat
      361 acctcatgga tgacgacgtt catgaacgat gtgaataccc ctgacgacac caccgcctta
      421 atgcaacgtt acgttgctaa agaggttatt catcgcctgg cgctaataca gtccctttat
      481 gaacaggaga ttgtaggggc agattatttt atgtatgcgc aggactatgc gccagagtgg
      541 attccacagt tacgggttgg gaaggcacac cctttcctcg gcggagaaaa agtggatgtt
      601 ctgttggcta cagagtcaac gcccatccac ctggaagttt atacccgttg ggaagaggga
      661 cgctggaaaa tttaccgcgt tcgggatgct gataaggatt atgaacagcc gatttatgac
      721 gcaggcgcca tcacccaggc tgaggcctgg tcagcaaaag tcgcgccgga atatgagaag
      781 cattaaaaaa gggaaccgcc atcgttctct tgttcgtacc ggagaggtta aagagcctat
      841 ttcatcaggc tcttattccg tcgctgaaaa cagcaagccg aaaataaccc aggcattatt
      901 taaaatatga agtgttatcg gtatcattag tccacggctt ctcattcgaa caacgcataa
      961 tatcgatgaa aaaacaaaca gataaacaaa agtcaccgca aagagatatt gtgtatgcat
     1021 aaatgcaaaa gcgagtgaag taataataat accggaaact cttgagtatc gaccccaacc
     1081 gatactgctg tttaataaaa accctctgaa tataatttcc tccgccacag gagccagaaa
     1141 gcacatcacc agcgtgttaa gaaatttatg aagaaaaaat tgccttgata actcggccat
     1201 ccagggttcc gggccactaa aaacattgta gagaacggta aggcacacca gggccagcgc
     1261 cggaacaaaa cattccacaa atgataagcg gcccaatgat aaaaacggat aatactttga
     1321 ataaatactc caggcggcaa tcgcgtagac aaaaacaata ctatatataa aaggcgcagc
     1381 cagacctccc aaataaagcc aggcatagga aggcgaaaat gaggcaaaaa caaaaatgcc
     1441 gaacaaacca aataaaacag ccacacaact caaactatgc c
//
LOCUS       DAJVSD010000394         1471 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.397, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000394 DAJVSD010000000
VERSION     DAJVSD010000394.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1471)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1471)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1471
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.397"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(3..1457)
                     /locus_tag="OQP62_004422"
                     /pseudo
     CDS             complement(3..1457)
                     /locus_tag="OQP62_004422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415044.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative allantoin permease"
BASE COUNT          450 a          368 c          293 g          360 t
ORIGIN      
        1 agttaacctg cgactttttg ctctcctgta ttttcaaaac ccgtgcgttt cttcagtagc
       61 gcataagcaa cgaacgcaac tattacgcct acaaaccagg acacgcggga taaaggctcc
      121 ataaatggta taaacttgcc gcctaatgac agaatgactg cgaccagggt gactgaaaat
      181 gcagtcaggt taaatccatt atcataatat ttgtaatcac cgctggcggt gtatagctca
      241 tcaagattaa tttttccacg cattaccaca aaataatgag ctaacattac gccgattacc
      301 gggccaagca taccgccgat aatatcgagg aacagataaa tactgtcctg attctccatt
      361 aatttccatg gacaaatcag tagactgata atactggcaa tcattacgcc atttttatag
      421 ttaagctttg tcggggtaag cgccgcaatt tgataccccg caggtataat attaccggtg
      481 gcgttggttg aaattgtcgt catcagaatc accagcactg caaagaatga agcaaacagg
      541 ctgtcccagc gctgcacaat atccagcacg ttccaggtat ccataccata atgaatactg
      601 gctccggcaa taatgcacac gctggctacg gcgaataata tatacgctac gataagcccc
      661 aatgtttgtc ccaatgcctg agcgcgaaat gaatgcgcgt tttgcgtgaa atcggacgcg
      721 ctcaccgctg gcgcagccca gacggcgact acggcgttaa tcaccactag gaacagaaag
      781 ccgctgtgct ctgctttttg cacgcctgaa ggcagatagt ccaaaatcgg gccaatgccg
      841 accagcgata ttgcccaaat agccatgccg ccaaagacaa tataaataca tggattgagg
      901 atagcggaaa atttatttaa tactttacca ccgccaaaac cgatgccaac gttaatgatc
      961 caaaaaatta gaaaagtaat tagccctggc agtgaaaaac ccagcagctt gaaatctccg
     1021 cctaatgtct aaaatcctgg ccagatcttc ccaattaaaa taagaaatgc cagcgatccc
     1081 gcgtaacact gtaagccgaa ccacataatt gccgcgattc cccctcgtaa taatccaggg
     1141 aatagcgcgc cgcggacgcc gtaagaacct cgcaatatca tagcaaaagg aacgccatat
     1201 ttgctgcctg ccgcgccatt cattaccatc gccgccgcaa taaataatgc gctgataata
     1261 atggccaaca tgatattaaa tgttgatagc cccagtataa aaaaaccgcc gaccataacg
     1321 taatttggca cgttatgtac agatcccatc cataaggtga aatagttaaa tgctttccag
     1381 tttcgttggg tttctgtttt aggtaataag tcttcgctat aaccgcgttg ctgatatagc
     1441 tctctttgat gttccataaa tccctctttt c
//
LOCUS       DAJVSD010000395         1411 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.398, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000395 DAJVSD010000000
VERSION     DAJVSD010000395.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1411)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1411)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1411
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.398"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            145..1383
                     /gene="alaC"
                     /locus_tag="OQP62_004423"
     CDS             145..1383
                     /gene="alaC"
                     /locus_tag="OQP62_004423"
                     /EC_number="2.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine transaminase"
                     /protein_id="HCS1723783.1"
                     /translation="MADSRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMG
                     NPDGATPPHIVEKLCTVAQRPDTHGYSTSRGIPRLRRAISHWYQERYDVDIDPETEAI
                     VTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE
                     LERAIRESYPKPKMMILGFPSNSTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVY
                     DGWKAPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYG
                     AFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKI
                     PEQYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAVRGIKT
                     MFRADGVLPSHPKPVEASTE"
BASE COUNT          310 a          349 c          405 g          347 t
ORIGIN      
        1 cggttgttcc tctttttcgt cgctaaaaaa tattttcatt agcctctcga caggaagaaa
       61 attttcaggc tattttctaa aggagccacc atcgtggcag cgtcgctcgg acggtccggg
      121 cgctaacgtt aatctgagga tattatggct gactcccgcc ctgaacgtcg ctttacgcgt
      181 atcgatcgcc ttccgcccta tgtttttaac atcaccgctg aactcaaaat ggctgcgcgt
      241 cggcgcggcg aagatattat tgatttcagt atgggtaatc ctgatggcgc aacccctccc
      301 cacattgtcg aaaaactttg caccgtcgcg cagcgtccgg atacgcacgg ttattccacg
      361 tcccgcggca taccgcgttt acgccgcgcg atttctcact ggtatcagga acgttatgat
      421 gtcgatatcg atccggaaac cgaagcgatt gtgaccatcg gttccaaaga gggactggcg
      481 catttaatgc tggcgacgct ggatcatggc gatacggttc tggtgccgaa ccccagttac
      541 ccgattcata tctatggcgc cgttatcgcc ggggcgcagg tgcgttcggt tccattggta
      601 gagggggtgg atttcttcaa cgagctggag cgcgctattc gcgaaagtta tccgaaaccg
      661 aaaatgatga ttttgggttt tccgtctaac tctacggccc agtgcgtcga actggaattt
      721 tttgaaaaag tggtcgctct ggctaaacgt tatgatgtgc tggtggtgca cgatctggcg
      781 tatgccgata tcgtgtacga cggctggaaa gcgccatcca ttatgcaggt gcccggcgcg
      841 cgcgacgtgg cggtcgaatt tttcacactg tcgaaaagct ataatatggc gggctggcgt
      901 attgggttta tggtgggcaa taaaaccctg gtcagcgcgc tggcgcgcat taaaagttat
      961 cacgattatg gtgcttttac cccgcttcag gtggcggcta tcgccgctct ggaaggcgat
     1021 cagcagtgcg tgcgcgatat cgccgagcag tataagcgtc gtcgcgatgt gctggtgaag
     1081 ggactgcatg aggcgggctg gatggttgaa atgccgaaag cctcaatgta cgtctgggcg
     1141 aaaatcccgg agcaatatgc ggcgatggga tcgcttgagt ttgccaagaa gctgctgaat
     1201 gaggcgaagg tttgcgtttc tccagggata ggctttggtg actatggcga cacccatgta
     1261 cgctttgcat taatagagaa tcgcgatcgc attcgccagg ccgtcagagg gattaaaacg
     1321 atgttccgcg ccgatggcgt gctgccgtca catccaaaac ccgttgaagc gagcacggag
     1381 tagaaaagca aacaggagcc ccatggctcc t
//
LOCUS       DAJVSD010000396         1407 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.399, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000396 DAJVSD010000000
VERSION     DAJVSD010000396.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1407)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1407)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1407
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.399"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(4..1257)
                     /locus_tag="OQP62_004424"
     CDS             complement(4..1257)
                     /locus_tag="OQP62_004424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1723784.1"
                     /translation="MSRTTILDDATASDIDEQRHSQPVQFIKRGTAPFMRVTLALFSA
                     GLATFALLYCVQPILPVLSQEFGVSPASSSVSLSISTAMLAIGLLFTGPLSDAIGRKP
                     VMVTALLLASCCTLLSTMMTSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAF
                     SMGLYISGNSIGGMSGRLLSGVMTDFFNWRIALAAIGCFALASALMFWKILPASQHFR
                     PTSLRPKTLFINFRLHWRDRGLPLLFAEGFLLMGAFVTLFNYIGYRLMLSPWELSQAV
                     VGLLSVAYLTGTWSSPKAGAMTSRYGRGPVMLFSTAVMLGGLLLTLFTSLWLIFAGML
                     LFSAGFFAAHSVASSWIGPRARRAKGQASSLYLFSYYLGSSIAGTLGGVFWHSYGWNG
                     VGGFIALMLVLAILVGTRLHHRLHA"
BASE COUNT          414 a          364 c          375 g          254 t
ORIGIN      
        1 ttttcaggcg tgaagacgat gatgtagccg cgtcccgacc aggatggcca gcaccagcat
       61 tagcgcgata aaaccaccta cgccgttcca gccgtaacta tgccagaata caccgcctag
      121 cgtcccggca atactggacc ccagataata gctgaaaaga taaagtgacg aggcctgtcc
      181 cttcgcccgg cgcgcacgcg ggccaatcca gctactggcc acggagtgcg cggcgaaaaa
      241 gccggcggaa aaaagcagca tcccggcaaa aatcagccaa agcgaggtaa aaagcgtcag
      301 taaaagcccg cccagcatta ctgcggtaga gaacagcatc accggccccc ggccatagcg
      361 tgaggtcatt gcgccagctt tcggcgagct ccatgtgccg gtgagatagg ctacggataa
      421 cagtccgacc acggcctggc ttaattccca gggggagagc atcaggcgat aaccaatgta
      481 gttaaacagg gtgacgaacg cgcccatcag taaaaaacct tccgcaaaca gcagtggtaa
      541 ccctcgatcg cgccagtgga gacggaaatt aataaatagc gttttaggcc gtagcgacgt
      601 gggacggaaa tgttgcgagg caggtaaaat cttccagaac atcagcgcgg acgccagcgc
      661 aaagcatccg atggccgcca gcgcgatgcg ccagttaaaa aagtcggtca tgacgccgct
      721 taataaacgc ccgctcatcc cgccgatgga attaccgcta atatagagcc ccatagagaa
      781 agcgacaaag ctgggatgga tttcttcgct caggtaggtc attcccaccg cggcgacgcc
      841 gcttaacgac agaccgatca gcgcgcgcat aatcagaata ccatgccagc tggtcatcat
      901 ggttgataac aatgtgcagc aggaggctaa taacaaggcg gtgaccatca ccggtttacg
      961 gcctatcgca tcagaaagcg ggccggtaaa aagtaagccg atagccagca tggcggtaga
     1021 aatagaaagt gaaacgctgc tgctggcggg ggagacgcca aactcctggg aaagtaccgg
     1081 tagtataggc tgaacgcaat aaaggagtgc gaaagtcgcc aggcccgcgg aaaaaagagc
     1141 cagcgtgacg cgcatgaaag gcgctgtacc gcgtttaata aattgaaccg gctgagaatg
     1201 gcgttgttca tcgatatcgc tcgccgtggc gtcatcgaga atagttgtac gactcacgtt
     1261 aaatccttgc tttacatctc cgtcaacagg agacgggtat aaccgacatg taaagcatag
     1321 aaaaagcaaa atattctgtc taatatatta attgtctcaa ataagacgtt aaaaatatga
     1381 atatcgaatt acgtcattta cgttact
//
LOCUS       DAJVSD010000397         1389 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.400, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000397 DAJVSD010000000
VERSION     DAJVSD010000397.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1389)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1389)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1389
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.400"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            21..557
                     /locus_tag="OQP62_004425"
     CDS             21..557
                     /locus_tag="OQP62_004425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HCS1723785.1"
                     /translation="MNKMLLAGSAGIVLLSAAASPVWADDNASTFSLGYAQSHTNHAG
                     TLRGVRLANNYEMSPDWGLTTSFAWLNGSQRYSDESSNGRVTTRYYSLLAGPSWKINN
                     QLSLYSQVGPVLLHQRDHGINESDSKVGYGYSAGVAYTPVSNVAITLGYEGADFDATH
                     NSGSLNSNGFNLGVGYRF"
     gene            604..1236
                     /locus_tag="OQP62_004426"
     CDS             604..1236
                     /locus_tag="OQP62_004426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdX family protein"
                     /protein_id="HCS1723786.1"
                     /translation="MKSHIMPGVALMVILFSGNLMAATNMTDNVTLNNDKISGQAWQA
                     MRDIGMSRFELFNGRTQKAEQLAAQAEKLLNDDSTDWNLYVKSDKKAPVEGDHYIRIN
                     SSITVAEDYLPAGQKNDAINKANQKMKEGDKKGTIEALKLAGVSVIENQELIPLQQTR
                     KDVTTALSLMNEGKYYQAGLLLKSAQDGIVVDSQSVQESPTHPVQHDAAH"
BASE COUNT          404 a          296 c          336 g          353 t
ORIGIN      
        1 aaataaccgg agagaagaag atgaacaaaa tgctattagc cggaagtgcc ggtattgttc
       61 tgctgtctgc tgcagccagt ccggtatggg cagacgataa tgccagtaca ttttcacttg
      121 gatacgccca gtcccatact aatcacgccg ggacgttgcg tggggttcgg ctggcaaaca
      181 actatgaaat gtcaccggac tgggggctga caacctcatt tgcctggcta aatggaagcc
      241 agcgctattc cgatgaaagc agtaatggtc gtgtaacaac ccgttattac tccctgcttg
      301 caggcccctc atggaaaata aataaccagt taagtctgta tagtcaagtg ggccccgtat
      361 tattgcatca gcgtgatcac gggataaatg agtctgatag taaggtcgga tatggttatt
      421 ctgctggcgt ggcttatacc ccggtcagta atgtcgctat aactctgggt tatgagggag
      481 cggattttga tgctacccat aacagcggaa gccttaatag caatggtttt aatcttggcg
      541 tgggttaccg gttctgaata ggataatccg ataaaaaatg ttactttgtg gagatgatgg
      601 attatgaaaa gccatattat gccaggcgtt gcgctgatgg ttatcctgtt ttcaggaaat
      661 cttatggccg caacaaacat gactgataac gttactctga ataatgacaa gatatccgga
      721 caggcctggc aggccatgcg tgatatcgga atgtcgcgat tcgagttgtt taatggtcgc
      781 acccaaaagg cggaacaact ggctgcgcaa gcagaaaaac tcctgaacga tgacagcact
      841 gactggaatc tgtatgtcaa atcagataaa aaagccccag ttgaaggaga ccactatatt
      901 cggataaatt catcgattac ggtagccgaa gattatctcc ctgcgggcca gaaaaatgat
      961 gctattaata aagcaaacca gaaaatgaaa gaaggagata aaaaagggac tatagaggcc
     1021 ctgaaactag caggcgtcag tgttattgaa aatcaggaac tcattcctct tcagcaaacc
     1081 cgtaaggatg tgactacagc gctttccttg atgaacgaag gaaaatacta tcaggcaggt
     1141 ctgttactga aatcagctca ggatggcata gttgtagact ctcagtcagt tcaggaatca
     1201 cccacgcacc ccgtgcagca cgacgccgcg cattaatatc ccccagcctg ctgtatatat
     1261 tacagcaggc agcattatgt ctgacagcca ttaccagttt gttctttgct gtcggcattg
     1321 tttttaaaat tcatccgtga agttcaggaa tatcagggta cctgcattta tatctattgt
     1381 gatgtccat
//
LOCUS       DAJVSD010000398         1387 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.401, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000398 DAJVSD010000000
VERSION     DAJVSD010000398.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1387)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1387)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1387
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.401"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..830
                     /gene="ssaL"
                     /locus_tag="OQP62_004427"
     CDS             <1..830
                     /gene="ssaL"
                     /locus_tag="OQP62_004427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SPI-2 type III secretion system apparatus
                     protein SsaL"
                     /protein_id="HCS1723787.1"
                     /translation="ALSGKLRESNKFTDAEKLERRQQALLRLIKQIQEDNGAALRPLT
                     EENSDPDLQNAYQIIALAMALTAGGLSKKKKRDLQSQLDTLTAEEGWELAVFSLLELG
                     EVDTATLSSLKRFMQQAIDNDEMPLSQWFRRVADWPDRGERVRILLRAIAFELSICIE
                     PSEQSRLAAALVRLRRLLLFLGLEKECQREEWICQLPPNTLLPLLLDIICERWLFSDW
                     LLDRLTAIVSSSKMFNRLLQQLDAQFMLIPDNCFNDEDQREQILETLREVKINQVLF"
     gene            888..1256
                     /gene="ssaM"
                     /locus_tag="OQP62_004428"
     CDS             888..1256
                     /gene="ssaM"
                     /locus_tag="OQP62_004428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-2 type III secretion system apparatus
                     protein SsaM"
                     /protein_id="HCS1723788.1"
                     /translation="MDWDLITERNIQLFIQLAGLAERPLATNMFWRQGQYETCLNYHN
                     GRIHLCQILKQTFLDEELLFKALANWKPAAFQGIPQRLFLLRDGLAMSCSPPLSSSAE
                     LWLRLHHRQIKFLESQCVHG"
     gene            1241..>1387
                     /locus_tag="OQP62_004429"
     CDS             1241..>1387
                     /locus_tag="OQP62_004429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723789.1"
                     /translation="MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTW
                     MVDIL"
BASE COUNT          353 a          289 c          350 g          395 t
ORIGIN      
        1 tggcgctgag tggtaaactg cgcgaaagta ataaattcac tgatgctgag aaactggagc
       61 gcaggcagca ggctttgctg cgtttgataa aacaaataca ggaggataat ggggcagcgt
      121 tgcgtccgct taccgaagag aatagtgatc ctgatttaca gaatgcgtat caaattatcg
      181 ctcttgcaat ggcgcttact gccggcgggt tgtcaaaaaa gaaaaaacgc gatttgcaat
      241 cgcaactgga tacgcttaca gcggaggagg gatgggaact tgccgttttt agtttactgg
      301 aacttggcga agtggatacc gctacgctgt cctcgctgaa gcgttttatg caacaggcga
      361 tagacaacga tgaaatgccc ttatcgcagt ggttcagacg cgtggcagac tggccggatc
      421 gcggtgaacg ggtccgtatt ttgctaagag caatagcctt tgaacttagc atatgcatcg
      481 aaccctcgga gcaaagtcgt ttggccgcag cattagtacg cttgcgtcgt ttgttgttat
      541 tccttggcct tgaaaaagag tgccagcgtg aggagtggat ttgccagttg ccgcctaata
      601 cattactgcc gctactactc gatatcattt gtgagcgctg gcttttcagc gattggttgc
      661 ttgatagact taccgctata gtttcttcat cgaagatgtt caatcggtta ctccaacaac
      721 ttgatgcgca gtttatgctg atacccgata actgttttaa cgacgaagat caacgtgaac
      781 aaattctcga aacgcttcgt gaagtaaaga taaatcaggt tttattctga tacctggctt
      841 tcaatattta ggtaaattgg ctttctggct catcatgagg cgtcaggatg gattgggatc
      901 tcattactga acgtaatatt cagcttttta ttcaattagc aggattagct gaacggcctt
      961 tagcaaccaa tatgttctgg cggcaaggac aatatgaaac ctgtctaaac tatcataatg
     1021 gtcgtattca cttatgtcag atactcaagc aaaccttctt agacgaagaa ctgcttttta
     1081 aagcgttggc taactggaaa cccgcagcgt tccagggtat tcctcaacga ttatttttgt
     1141 tgcgcgatgg gcttgcaatg agttgttctc cacctctttc cagctccgcc gagctctggt
     1201 tacgattaca tcatcgacaa ataaaatttc tggagtcgca atgcgttcat ggttaggtga
     1261 gggaatcagg gcgcaacagt ggctcagtgt atgcgcgggt cgtcaggata tggttctggc
     1321 gacggtgtta ttaatcgcta tcgtgatgat gctgttacct ttgccgacct ggatggttga
     1381 tatcctg
//
LOCUS       DAJVSD010000399         1372 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.402, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000399 DAJVSD010000000
VERSION     DAJVSD010000399.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1372
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.402"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..145
                     /locus_tag="OQP62_004430"
     CDS             <1..145
                     /locus_tag="OQP62_004430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001513672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723790.1"
                     /translation="NPLTTYARNYPCSGKKGGVSHCTSDGKFVCNDGTISKSKKICTK
                     NSR"
     gene            334..>1372
                     /locus_tag="OQP62_004431"
     CDS             334..>1372
                     /locus_tag="OQP62_004431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001544402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1723791.1"
                     /translation="MAVRKLTTGKWLCECYPAGRSGRRVRKQFATKGEALAFERHTME
                     ETESKPWLGESVDRRTLKDVVELWFKLHGKSLTAGQHVYDKLLLMVDALGNPLATDLT
                     SKMFAHYRDKRLTGEIYFSEKWKKGASPVTINLEQSYLSSVFSELSRLGEWSYPNPLE
                     NMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVNLTRSQ
                     VTKYRITFVRTKGKKNRSIPISKELYEEIMALDGFNFFTDCYFQFLSVMEKTSIVLPR
                     GQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALRFNPLA
                     TLPSGDKVAAAV"
BASE COUNT          411 a          313 c          313 g          335 t
ORIGIN      
        1 aaacccacta actacctatg ctagaaatta tccctgctca gggaaaaagg gaggtgtttc
       61 tcactgtacc tcagatggca aattcgtttg caatgatgga actattagta aatccaaaaa
      121 aatctgtact aaaaactcac gataactttt gcttttatat ctgcgtctaa aataaaaatg
      181 agccgcaggt taaccgcaaa agttacatgc tcacatagca aaaagaatag ccaacttcat
      241 tatggcttca gtgagatgta tggtcgtagg atttcataca ttgacactgg ttatacatac
      301 agtaaaaatg ctctctactg gagggcattt tttatggcag tacgaaaact caccacaggg
      361 aaatggcttt gcgaatgtta ccccgccgga cgaagtgggc gtcgtgtgcg taaacaattc
      421 gccaccaaag gcgaagctct ggcttttgag cgtcacacta tggaagaaac cgaatcaaag
      481 ccatggctgg gcgaatcagt ggatcgtcga accctgaaag acgtggttga gctatggttc
      541 aaactacatg gtaaatctct gactgctggg caacatgtct atgacaaatt gctgctgatg
      601 gttgacgctc tgggcaatcc tcttgcaacc gatctcacct ctaaaatgtt tgcccactat
      661 cgagataaac gcctgacagg cgagatctac ttcagcgaga aatggaagaa aggagcaagc
      721 ccggtcacca ttaacctgga gcaaagctat ctaagtagtg tttttagcga actatcccgt
      781 ctgggcgaat ggtcgtatcc gaacccactg gagaacatgc gaaaattcac catcgcagaa
      841 aaagagatgg catggcttac ccatgagcag attgttgaat tactggctga ttgcaaacgt
      901 caggacccaa ttctagcact ggtagttaag atatgcttaa gcacaggcgc acgctggcga
      961 gaagccgtaa atcttactcg ttcacaggtg accaaatacc gaattacctt tgtaagaacg
     1021 aaggggaaga aaaacagaag catccctatc agtaaagagc tttacgaaga gatcatggcg
     1081 cttgatgggt tcaatttctt cacagactgc tattttcaat ttttatccgt gatggaaaaa
     1141 acgtctatcg tgctccctcg cggtcaactc acacacgttc tgcgccatac gtttgcggcg
     1201 cacttcatga tgtcgggtgg aaacattctg gccttacaaa aaattctcgg acaccacgat
     1261 ataaaaatga ctatgcgtta cgcacatctg gcaccggatc atctggaaac ggcgctccgt
     1321 ttcaatcctc tggcaacgct gccaagtggc gacaaagtgg cggcagcggt tg
//
LOCUS       DAJVSD010000400         1369 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.403, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000400 DAJVSD010000000
VERSION     DAJVSD010000400.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1369
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.403"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..>1369
                     /locus_tag="OQP62_004432"
     CDS             <1..>1369
                     /locus_tag="OQP62_004432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HCS1723792.1"
                     /translation="STDNPSDYSTLQLLTRKSFPLYPTHAGFYWSEPEYINGKGWHAS
                     VAVADQQGVFFGVMVKLPDLISKSHLPLDDSIRVWLDQNNHLLPFSYIPQKIRTQLEN
                     VTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKTILQQIPFTLTALVLM
                     TSAFCWLLHRSLAKPLWRFVDIINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQ
                     VQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT
                     TPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQT
                     IQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRH
                     EEQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLK
                     SVPGVG"
BASE COUNT          414 a          313 c          277 g          365 t
ORIGIN      
        1 tatctactga taacccttca gattattcaa ctctacagct tttaacgcga aaaagctttc
       61 ctttataccc aacccatgcc gggttttact ggagtgaacc agaatacata aacggcaaag
      121 gatggcacgc ttccgttgcg gttgccgatc agcaaggcgt attttttggg gtgatggtta
      181 aacttcctga tctcatttct aagagccacc taccattaga tgatagtatt cgagtatggc
      241 tggatcaaaa caaccactta ttgccgtttt catacatccc gcaaaaaata cgtacacagt
      301 tagaaaatgt aacgctgcat gatggatggc aacaaattcc cggatttctg atattacgca
      361 caactttgca tggccccgga tggagtctgg ttacgctgta cccatacggt aatctacata
      421 atcgcatctt aaaaactatc ctccaacaaa tcccctttac attaacagca ttggtgttga
      481 tgacgtcggc tttttgctgg ttactacatc gctcactggc caaaccgtta tggcgttttg
      541 tcgatatcat taataaaacc gcaactgcac cgctgagcac acgtttacca gcacaacgac
      601 tggatgaatt agatagtatt gccggtgctt ttaaccaact acttgatacc ctacaagtcc
      661 aatacgacaa tctggaaaac aaagtcgcag agcgcaccca ggcgctaaat gaagcaaaaa
      721 aacgcgctga gcaagctaac aaacgtaaaa gcattcatct tacggtaata agtcatgagt
      781 tacgtactcc gatgaatggc gtactcggtg caattgaatt attacaaacc acccctttaa
      841 acatagagca gcaaggatta gctgataccg ccagaaattg cacactgtct ttgttagcta
      901 ttattaataa tctgctggat ttttcacgca tcgagtctgg tcatttcaca ttacatatgg
      961 aagaaacagc gttactgccg ttactggacc aggcaatgca aaccatccag gggccagcac
     1021 aaagcaaaaa actgtcatta cgtacttttg ttggtcaaca tgtccccctc tattttcata
     1081 ccgacagtat ccgtttacgg caaattttgg ttaatttact cgggaacgcg gtaaaattta
     1141 ccgaaaccgg agggatacgt ctgacggtca agcgtcatga ggaacaatta atatttctgg
     1201 ttagcgatag cggtaaaggg attgaaatac agcagcagtc tcaaatcttt actgcttttt
     1261 atcaagcaga cacaaattcg caaggtacag gaattggact gactattgcg tcaagcctgg
     1321 ctaaaatgat gggcggtaat ctgacactaa aaagtgtccc cggggttgg
//
LOCUS       DAJVSD010000401         1363 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.404, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000401 DAJVSD010000000
VERSION     DAJVSD010000401.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1363
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.404"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            383..1333
                     /gene="corA"
                     /locus_tag="OQP62_004433"
     CDS             383..1333
                     /gene="corA"
                     /locus_tag="OQP62_004433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000947142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HCS1723793.1"
                     /translation="MLSAFQLEKNRLTRLEVEESQSLIDAVWVDLVEPDDDERLRVQS
                     ELGQSLATRPELEDIEASARFFEDEDGLHIHSFFFFEDAEDHAGNSTVAFTIRDGRLF
                     TLRERELPAFRLYRMRARSQAMVDGNAYELLLDLFETKIEQLADEIENIYSDLEKLSR
                     VIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQARE
                     ILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSY
                     GMNFEFMPELKWSFGYPGAIIFMILAGLAPYLYFKRKNWL"
BASE COUNT          310 a          335 c          363 g          355 t
ORIGIN      
        1 atccggcgat atattgatgt taatattctg aaatcataga taaatactct cactctgcta
       61 acctttctgc ataaggggaa attattgctt tttcgcgttt cgttgcgtgt tgacggcaaa
      121 tttttgctgg cgtaacatgc gcccacgatt acgctaagag gacattcgcc ttggacacac
      181 ccagtagata ctggctcatt atcctgtcat ccaggatcaa ctcctaaggc tatccctttt
      241 tgctgatagc cttagcggtt gtcagcgacc tttcattttt tcccgtcgcg ttgagtcagg
      301 ctgtttaatg gtctgaaacc caatttgttt ctgtgtgccc atctgaactg tccgatattt
      361 ttacgcattg ggagtcccgg tcatgctgag cgcatttcaa ctggaaaaaa accgactgac
      421 ccggctggaa gtcgaggagt cacaaagcct gattgatgcc gtatgggtcg atttggtcga
      481 accggacgac gacgagcgat tgcgcgtaca atctgagctg ggccagagtc tggcgacgcg
      541 tcctgaactg gaagatatcg aagcatccgc gcgcttcttt gaagacgaag acggactgca
      601 tatccactcc ttcttcttct tcgaagatgc ggaagatcat gccggtaact ctacggtggc
      661 attcactatt cgcgatggcc gtctgtttac gctgcgtgaa cgcgaactgc ccgccttccg
      721 tttgtatcgt atgcgcgccc gcagccaggc gatggtcgat ggtaatgctt acgaactact
      781 actcgatctg ttcgaaacca aaattgaaca gttggcggat gaaatcgaaa acatctacag
      841 cgatctggaa aaactgagcc gcgtcattat ggaagggcat cagggcgatg aatacgacga
      901 agcgctctcc acgctggcgg aactggaaga tatcggctgg aaggtacgcc tgtgtctgat
      961 ggatacccag cgcgcgctga acttcctggt gcgcaaggcg cgcttaccgg gcggacagct
     1021 ggagcaggcg cgtgagatcc tgcgcgatat cgaatctctg ctaccgcaca atgaatcgct
     1081 gttccagaag gtgaacttcc tgatgcaggc ggcgatgggt ttcatcaaca ttgaacagaa
     1141 ccgcattatc aaaatcttct cggtggtttc cgtggtgttc ctgccgccga cgctggtcgc
     1201 ttccagctat gggatgaact tcgagtttat gccggaactg aagtggagct ttggttatcc
     1261 aggcgcgatt atctttatga ttctggcggg gcttgcgccg tatctgtact ttaagcgcaa
     1321 gaactggctg taagacatta aggccagggt gattcagctg cgg
//
LOCUS       DAJVSD010000402         1322 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.405, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000402 DAJVSD010000000
VERSION     DAJVSD010000402.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1322
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.405"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(364..489)
                     /locus_tag="OQP62_004434"
     CDS             complement(364..489)
                     /locus_tag="OQP62_004434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001748351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1723794.1"
                     /translation="MKKWLIGGILIASFLTGCLMWHNIDKWFNKDIEVFYAGDDN"
     gene            867..1211
                     /locus_tag="OQP62_004435"
     CDS             867..1211
                     /locus_tag="OQP62_004435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type lysozyme inhibitor"
                     /protein_id="HCS1723795.1"
                     /translation="MMKRKLIPFTLFLAALSASTTSIAASQEISKSIYTCNDNQVMEV
                     IYVNTEAGNAYAIISQVNEMIPMRLMKMASGANYEAIDKNYTYKLYTKGKTAKLVEGD
                     DKPVLSNCSLAN"
BASE COUNT          393 a          304 c          247 g          378 t
ORIGIN      
        1 acgcccttct ccattatcaa acccagcgcc gccttcgggc ggccttttgg gaggaaatat
       61 ggtcgccaaa aataaaactc acggtcgtcg tattcgtcag tctctgcaac agttacatca
      121 tcgttgtctt tttcagcaac tggcggtaag cccaccagga gcaaaatatg tttcagtcac
      181 cgctgaaaca aaaaactggc ttattcatct tgtgacttca gagggccgtt agcacgcggt
      241 agtgactgtc catgttgtcg ctaaaatttt aatgaaatga cttttataca cctacaattt
      301 gcgcccggct gctccgggcg ccatacctga agatatgaca cccgttgcca actgacagga
      361 gttttagtta tcgtctccgg cgtagaaaac ttcgatatct ttattaaacc atttatcaat
      421 gttgtgccac atcagacaac cggtcagaaa acttgcgatc aatatccctc ctataagcca
      481 ctttttcaca tatactccta aataacccct gttgatgcca ttatctgatc gataataaaa
      541 agaccatcat ttgaagaaat agtttcactg acagataccg tatgaaacga gacagtgaac
      601 agtaccgttt tcttcggttt ttatgccata gtattgagca gtggtgacaa tcattttcca
      661 tcgcgccata atgatttgca gtctatagtt tatgatttta agatttgtct actcatcaca
      721 tatgtcagtg atggataaat tataatacgc ttttctggcg cacttttcgt cagtaaacag
      781 gaatactaca gcattcatcg tattgatgcc gctttatctc ccgctcttca gggaattaac
      841 gacaatttta tacacaaagg atactaatga tgaaacgtaa attgatccca tttaccctct
      901 ttctcgctgc gcttagcgcc agtaccacct ctatagcagc ttcgcaggag atttctaaat
      961 ctatatacac ctgtaatgat aaccaggtta tggaggtgat ttacgtcaac accgaggctg
     1021 gaaacgccta tgcgattatc agtcaggtaa acgagatgat cccgatgcgg ttaatgaaaa
     1081 tggcctccgg agcaaattac gaagccatag acaaaaatta tacttacaaa ctttatacca
     1141 aaggcaaaac ggctaaactg gtggaaggtg atgataaacc tgttctcagt aactgttcct
     1201 tagctaacta accttcagaa atgcctgaag gctcatcagg catttccact tcaaccttcc
     1261 tgtaacgtaa cgttaaagaa tatgtgaatc actaccgtag gataatggct aattagtaac
     1321 ca
//
LOCUS       DAJVSD010000403         1322 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.406, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000403 DAJVSD010000000
VERSION     DAJVSD010000403.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1322
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.406"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..393
                     /locus_tag="OQP62_004436"
     CDS             <1..393
                     /locus_tag="OQP62_004436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1723796.1"
                     /translation="TEFDKEELLAGLRSYNAQFVDFSKNGQLGVYCRNESGEMVGGLI
                     ADRKGPWLCIDYLWVSESARSRGLGSQLMEMAEKEGLRKGCVHGLVDTFSFQALPFYE
                     KQGHILQMSLPDFPKVGSQRHYLIKPDL"
     gene            complement(781..1257)
                     /locus_tag="OQP62_004437"
     CDS             complement(781..1257)
                     /locus_tag="OQP62_004437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000030934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723797.1"
                     /translation="MSKDEISYQILYRYSLEKLYSTLTRRVDNVLSFALVFLGVGVTI
                     NVGSPFILGPGIVGIAILKRVLRFGTRSTQADRQSRAWLKLFNTQHRFPSDKTLFLAF
                     TSLEQDASEVWSMLIGPAIVMTETALGKTPIEPLTAGEKLCAFLSGATKSQPAARN"
BASE COUNT          351 a          282 c          335 g          354 t
ORIGIN      
        1 actgaatttg ataaagaaga actattagcc ggattaagaa gctacaatgc tcagttcgtc
       61 gattttagta aaaatgggca gcttggggtc tactgcagaa acgaaagcgg cgaaatggta
      121 ggcggattaa ttgctgacag aaaaggtccg tggctttgca tcgactatct ttgggtaagt
      181 gaatctgcaa ggagccgcgg tctggggagt caacttatgg agatggccga aaaagaaggt
      241 ttgcggaaag gctgtgttca tggacttgta gataccttta gcttccaggc tctccctttt
      301 tatgaaaaac agggtcatat acttcaaatg tcgctaccgg actttcctaa agtaggttcg
      361 caaaggcatt atttaattaa gcctgattta tagctttgct acatttgaat acccatagcc
      421 ttatgaaagc tgcaatcagg tagctttaaa atatatcgta ttgttggcct gtacacacca
      481 tgttcagcgt ccgcttctgg cgcagggcgg acagtcagat taggtttggc gctgtgccat
      541 agatatgtca gctcacattt gagctaatac cccctggcac ggctagaggt actcagacag
      601 ccgcttgtag gcggcatggt acggatacaa aaacatatag cgctgttata taaactgtaa
      661 actgggctgt gcgtataata cgaatctttc actcagagaa acctgctgac agcgttagtg
      721 ctccattaat taattttgta ctaaatctct gtggtatggc acagacgttt agaagacagg
      781 tcaattgcga gctgctggct gggatttcgt cgcgccactc aaaaatgcac agagtttttc
      841 acccgccgtc aatggctcaa tgggcgtttt tccgagggcg gtctcagtca tgacgatggc
      901 aggaccaata agcatggacc atacttcgct cgcgtcttgc tcaagcgatg tgaaggcaag
      961 gaacagtgtc ttatctgaag gaaagcggtg ctgagtatta aaaagtttca gccaggcgcg
     1021 ggactgccgg tcggcctgtg ttgagcgcgt gccgaagcgg agtactcttt ttagtatggc
     1081 gatacccaca atgcctggcc ccagaataaa gggactcccg acgtttatgg tgacgccgac
     1141 cccgagaaaa acgagggcga atgacagcac gttatctact cttctggtaa gagtactgta
     1201 tagtttttcc agagagtacc ggtaaagaat ttgataactg atttcatctt tgctcataca
     1261 tctccagatg gtttttcgat tacgctccgg tatgctcccg gaatcctgac agattctgca
     1321 at
//
LOCUS       DAJVSD010000404         1321 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.407, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000404 DAJVSD010000000
VERSION     DAJVSD010000404.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1321
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.407"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(50..1252)
                     /locus_tag="OQP62_004438"
     CDS             complement(50..1252)
                     /locus_tag="OQP62_004438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000439232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HCS1723798.1"
                     /translation="MERFDAVIIGAGAAGMFCAAQAGQAGSRVLLIDNGKKPGRKILM
                     SGGGRCNFTNLYVEPAAYLSQNPHFCKSALARYTQWDFIDLVGRYGIAWHEKTLGQLF
                     CDDSAQRIVDMLVAECDKGGVTMRLRSEVLSVERDESGFVLALNGETVTTQKLVIASG
                     GLSMPGLGASPFGYKIAEQFGLKVLPTRAGLVPFTLHKPLLEQLQTLSGVSVPCVITA
                     RNGTVFRENLLFTHRGLSGPAVLQISSYWQPGELVSINLLPDLSLEDVLNEQRNAHPN
                     QSLKNTLAMHLPKRLVECLQQLGLIPDVSLRQLNVRDQQTLVDTLTAWQVQPNGTEGY
                     RTAEVTLGGVDTNELSSRTMEARRVPGLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQ
                     DLIALKIN"
BASE COUNT          319 a          399 c          328 g          275 t
ORIGIN      
        1 aagatatacg gcgatcagtc aaatgagacc gaaaaacaca taatatcaat tagttaattt
       61 ttaacgcaat caaatcctgc gcgcaggccc aggcgctcga ccaggcccac tggaagttat
      121 agccgcccaa ccagccggtg acgtccatca cttcgccgat aaaatagaga cccggcacgc
      181 ggcgcgcctc catagtccgc gatgatagtt cgtttgtatc cacgccgccc agcgtcactt
      241 ccgctgtccg atagccttcg gtaccgttag gctgtacttg ccaggccgtc agcgtgtcaa
      301 ccaacgtctg ctggtcacga acgttcaact gcctgagcga tacatccggg atgagcccca
      361 actgttgtaa acactccacc agccgtttcg gcagatgcat cgccagcgtg ttcttcagac
      421 tctggttcgg gtgcgcgtta cgctgttcat tgagaacgtc ttccagcgag agatccggca
      481 ataagttaat gctcactaac tcgcccggtt gccagtagct ggaaatctgt aaaacggcgg
      541 ggccggacag cccacgatgg gtaaaaagta agttttcccg aaataccgtg ccattgcggg
      601 cggtaatcac gcagggcaca gagacgccag acagcgtctg gagctgttct aacagcggct
      661 tatgtagcgt aaagggcacc agcccggcgc gcgtcggcaa caccttgaga ccaaactgtt
      721 cggcgatttt atagccaaac ggcgatgcgc caagccccgg catcgacagg ccgccgctgg
      781 caatcaccag cttttgcgta gtcaccgtct cgccgttcaa cgccagtacg aaacccgact
      841 catcacgctc gacgctcaat acctcgctac gcaggcgcat cgttacgcca cctttgtcgc
      901 actcggcaac cagcatatcg acaatgcgtt gggcggaatc atcgcaaaaa agctgtccca
      961 gcgttttctc atgccaggct atcccatacc tgccgaccag atcgataaag tcccactggg
     1021 tatagcgggc taatgctgat ttgcaaaaat gggggttctg gctcaaatac gcagcaggct
     1081 caacataaag attagtaaag ttgcagcgcc caccgccgga catgaggatt ttacgtcctg
     1141 gcttcttgcc attatcgatg agcagcacgc ggctacccgc ttgtcctgcc tgtgcggcgc
     1201 aaaacatgcc cgctgcgcca gcgcctataa taacagcatc aaacctttcc acgtcgcctt
     1261 cctctctcaa attcgggcga gaattgtaaa gtttcctcag tggtcgcacc agcgcgaaaa
     1321 g
//
LOCUS       DAJVSD010000405         1307 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.408, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000405 DAJVSD010000000
VERSION     DAJVSD010000405.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1307)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1307)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1307
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.408"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            180..335
                     /locus_tag="OQP62_004439"
     CDS             180..335
                     /locus_tag="OQP62_004439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_448360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723799.1"
                     /translation="MHHAATFILWVTPLLFDQKTTTAIFSVAYGILRRLNICYRTFSL
                     KHNEENK"
     gene            332..556
                     /locus_tag="OQP62_004440"
     CDS             332..556
                     /locus_tag="OQP62_004440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2594 family protein"
                     /protein_id="HCS1723800.1"
                     /translation="MSTPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILK
                     MEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ"
     gene            complement(623..1306)
                     /gene="sdiA"
                     /locus_tag="OQP62_004441"
     CDS             complement(623..1306)
                     /gene="sdiA"
                     /locus_tag="OQP62_004441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014884378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator SdiA"
                     /protein_id="HCS1723801.1"
                     /translation="MLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKI
                     SLRTTYPQAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGL
                     RRGVTQCVMLPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMV
                     MAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIA
                     CYAAATGLI"
BASE COUNT          365 a          325 c          290 g          327 t
ORIGIN      
        1 tacgtcatgt ggcaactgcc aacgttgtag ccccttctga cggcgctgtt ccgggctgct
       61 atttcataat ggtgacaaaa atttcacgtt ccgctgtcta aacactaatt agggaatcaa
      121 ctttgtaaca ataattaacg agtaaaatac gcgtaataaa caaagaatga agaaaatata
      181 tgcatcacgc ggcaacgttt attttgtggg taacccctct gctttttgat caaaaaacaa
      241 ccactgctat ttttagcgta gcttatggta tactccgccg ccttaacatc tgctatcgca
      301 cattttcact gaaacataac gaggaaaata aatgagtacg cctgattttt ccaccgctga
      361 gaataatcaa gaactggcta ctgaagtcaa ctgcctgaaa gccatgttaa cgctgatgct
      421 gcaggcgatg ggccaggccg atgcagggcg cgtgattctt aaaatggaaa aacagatcgc
      481 gcagatggat gatgaagcac aagcggcggt attttccagt acggttaagc aaattaaaca
      541 ggcttaccgc cagtagtaaa aaaccggctg ttagcatcgc tttcagccgg tttcgcgtct
      601 ggcgcgaagc atcgtcagca cgtcatatca gacctgtcgc cgcagcgtag caggcaatct
      661 gtgttttatt tggcgcattg aatttcttct gcatgttttt ctgatggaag ttaacggtat
      721 tttcagaaat cgacagaata atggcgatct ccgatgaggt cttcccttcc gccgtccact
      781 tcagaatctc tttctcacgt ttactgaaac gcatctcagg cgccatcacc atgtcgtctt
      841 caagtcttgt cagcgccgaa agactctccc gcgccagcag ttgcaacctc agctccactt
      901 catcgtaggt aaacgaggag cagcgtaaac tgctacggga gaaagataaa aagcccagcg
      961 cccggttcgg caacatcaca cactgggtta cgcctctgcg taatccgaaa cgctgggcgg
     1021 catcccacat cgcctgcgct tcatgaaata gcacgtcatc ccaatgtaaa tgaccctgcc
     1081 tgaaattttc cggctttaat accggatcaa tcgcgaaata gttttcggac tgataatgcg
     1141 ttacccacgc ctgaggataa gtggtacgaa gcgatatttt aggccgggta aagggaacgg
     1201 gatgacgaac acacagggca taataatcaa attccagccg ctgtgtctga tattgcaatt
     1261 cagtataaac atcctctgct gccgccatct cctgaaagcg taacaac
//
LOCUS       DAJVSD010000406         1268 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.409, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000406 DAJVSD010000000
VERSION     DAJVSD010000406.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1268)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1268)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1268
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.409"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..1178)
                     /locus_tag="OQP62_004442"
     CDS             complement(<1..1178)
                     /locus_tag="OQP62_004442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HCS1723802.1"
                     /translation="MEGVQTMFAKFIDVIQTFLTEPAILIGILVGVGYALDKKTPIKI
                     ITGMISAMVGLMMVLFGGFQFSATFKPVAEAVSKAYGVHGYLMDSYAMKAATQIALGD
                     NFGYVGYVFVLAFFTNLILVLFGRYTGAKGIFLTGNTGVSHSQAVLWLIVFWLGFGWV
                     QSIVIAGVLTGVFWAFSTTLIVKPIAKVTNNAGFTIAHNQMLGLWFFSKFAHKFGDPE
                     KHDAENLKLPGWLAIFNHNVTAIAIVMTLFVGGFLLATGIDNVQLMAKGKPWYIYIIN
                     LGLQFSMYMVILLQGVRMMVGEINGSFKGWQDRFIPNAIPAVDVAALLPFSPNAATLG
                     FVFCTFGTIFSMGILLLIHSPIMVLPGFVPLFFSGGPIGVLANRMGGYRSVIICTFLL
                     G"
BASE COUNT          398 a          315 c          263 g          292 t
ORIGIN      
        1 cctaacagga aagtacaaat aataacggaa cgatatcccc ccattcggtt ggctaatacg
       61 ccgatgggac cgccggaaaa gaagagcgga acaaaaccag gcaataccat aatagggcta
      121 tggatgagca gcaggatgcc catggaaaaa atcgtgccga aagtacaaaa gacgaatccc
      181 agcgtggccg cgttaggcga aaaaggtaat aaagcagcaa catccacagc cggtatggcg
      241 ttaggaataa agcgatcctg ccatccttta aacgaaccgt taatttcacc aaccatcatc
      301 cgcacgccct gcagcaagat gaccatatac atagagaatt gcaggcccag attgataata
      361 tagatatacc agggtttgcc tttcgccatt aactgtacgt tatcgatccc tgtcgccaat
      421 agaaaaccgc caacgaagag cgtcatcaca atggcgattg ccgtcacgtt gtggttaaaa
      481 atagctaacc aaccgggaag tttcaggttt tcggcgtcat gcttttccgg atcgccgaat
      541 ttatgcgcga atttcgagaa aaaccacagc cccagcatct ggttatgcgc gatggtaaaa
      601 ccggcgttat tggtcacttt ggcgatgggt ttaacaataa gcgtggttga aaacgcccaa
      661 aagaccccgg tcaatacccc ggcaatcaca atggattgta cccaaccgaa ccctagccag
      721 aagacgatta accacagtac cgcctgtgaa tgagagaccc cggtattacc ggtaagaaat
      781 ataccttttg cgccggtata acggccaaat aaaactaata tcaggttagt aaaaaacgcc
      841 agtacaaaaa cgtatcctac atagccgaaa ttatcgccca gcgctatttg cgtcgcagct
      901 ttcatggcgt atgaatccat taagtatcca tgtacgccat aagccttgct gactgcttct
      961 gcaaccggtt taaaagtggc tgaaaattga aagccgccaa ataacaccat cattaaaccg
     1021 accatcgcgc tgatcatacc ggtgataatt tttataggcg tctttttatc cagcgcatag
     1081 ccaacaccga ctaatatccc aattaatatt gccggttcag ttaaaaacgt ttgaataaca
     1141 tctataaatt tggcaaacat cgtctgaacg ccctccataa gcgtgtctat tcgttgtcat
     1201 aattgacccc tttactgacg ttacgtattg cttcgctgat gctattgaaa gttacccgat
     1261 aaaccacc
//
LOCUS       DAJVSD010000407         1261 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.410, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000407 DAJVSD010000000
VERSION     DAJVSD010000407.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1261)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1261)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1261
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.410"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            30..>1261
                     /gene="siiC"
                     /locus_tag="OQP62_004443"
     CDS             30..>1261
                     /gene="siiC"
                     /locus_tag="OQP62_004443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-4 type I secretion system protein SiiC"
                     /protein_id="HCS1723803.1"
                     /translation="MKIKMFFLTTAFITQSTYASELPVIPLRDLVNAALTHQPSVAVS
                     YYETEKKNSDLDLSRAALYPTLDLTSGLNNNRKESSGTERNVENKVSLSYRITDFGVR
                     GANIRKSEYERDNSKTDYEKTKNIVSQEVVTTYYNISKYREMIDGVNLEKEFYKKMLE
                     TFSLLVSSGVAMQSDMRKVQVSIDALNTRSIMYQSMLDDEMYKMQNMTGLNLSPDQIQ
                     SDEKFNLFKKYIFVESPEKLMDMVMKYNDDYKMLVNTRKAATEDINAAKSSYFPTVDL
                     VSSYVQNNPSGSAKKSDYEDEFKTGINVSFNIFNGFRNAAQERKMVASYSQAKLQIDD
                     FLIKTRYNIDSQLSKYTAAKETYSVAERSHTNALQLTELYEQEFQLGQKSLLDLISSR
                     NEAFQAYVSMIDSKYSLY"
BASE COUNT          443 a          216 c          254 g          348 t
ORIGIN      
        1 gcaacgtttg ttaaacaagg aggaaaaaaa tgaagattaa gatgtttttt ctgacgactg
       61 cttttattac acaaagcaca tacgccagcg agcttccggt cattcctcta agagatttag
      121 ttaatgccgc attaacgcat cagccctctg ttgctgtttc atattatgag actgaaaaga
      181 aaaacagtga cttagatctt tcacgggcag cactttatcc taccctggat ctaacctctg
      241 gccttaataa taacagaaag gagtcgtcag gtaccgagag aaacgttgaa aataaggtat
      301 ctttatcata ccgaataacg gattttggag tgaggggggc taatatcagg aaatctgaat
      361 acgaaagaga taatagtaaa actgactatg aaaaaacaaa gaatatagtg tctcaggagg
      421 ttgtgacaac ctattacaac atcagtaaat atcgtgaaat gattgatggc gtaaatctgg
      481 agaaagagtt ttataaaaag atgctggaaa ctttttcgct actggtatct tccggtgtag
      541 ctatgcaatc tgatatgcgt aaagtacaag tatctatcga tgcattaaat accagaagta
      601 ttatgtatca gtcgatgctg gatgatgaaa tgtataaaat gcagaatatg actggtctga
      661 atttatcacc agatcagatt caaagcgatg aaaaattcaa cctcttcaaa aaatatatct
      721 ttgtcgaaag ccctgaaaaa cttatggaca tggtgatgaa atacaacgat gactataaga
      781 tgcttgtcaa tacccgaaaa gctgcgaccg aagatattaa tgccgcaaaa tcatcctatt
      841 ttccgactgt agatctcgtt tccagctatg tacagaataa tccgagcggt agtgccaaaa
      901 aaagtgatta tgaagatgaa tttaaaacgg gtatcaatgt cagtttcaac atttttaatg
      961 ggtttagaaa tgcagcccag gaaagaaaaa tggtggcaag ttactcgcag gctaagctgc
     1021 aaattgacga tttcttgatt aaaactcgtt ataacattga ttcacaactt tcaaaataca
     1081 ccgctgcaaa agagacttac tcagtggcgg aacgttcaca tacaaacgcg ttacagctta
     1141 ctgaattata tgagcaggag tttcagttag ggcaaaaaag tttgcttgat ttaatttcaa
     1201 gccgtaatga agcatttcag gcatatgtaa gcatgatcga cagcaaatat agcctgtata
     1261 t
//
LOCUS       DAJVSD010000408         1257 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.411, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000408 DAJVSD010000000
VERSION     DAJVSD010000408.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1257)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1257)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1257
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.411"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            10..651
                     /locus_tag="OQP62_004444"
     CDS             10..651
                     /locus_tag="OQP62_004444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723804.1"
                     /translation="MKLDTRLTSSALTLALAAVVIPFTADWQLPLLNGVVVRWIENGQ
                     ALWLLFGALFTAWYIRPLSRPEGAKQFWLWAVVWWVVLLGRSTSWGRDYFPDEPRMLF
                     RTISVLLIAALVLPVLFFAGLRKEIVRRLRDVPLPLWLFTVTACSYLISDTVEHHRWL
                     SPIFLHNARYTDLIEELYEVPFMIGLFMVTVGFMQQDKQDECTALELTPYHAK"
     gene            965..1213
                     /locus_tag="OQP62_004445"
     CDS             965..1213
                     /locus_tag="OQP62_004445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HCS1723805.1"
                     /translation="MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGG
                     WISTFFGFGKVDGFNFGSFAVAVIGAIVVLLIYRKIKS"
BASE COUNT          302 a          251 c          338 g          366 t
ORIGIN      
        1 cttatgatca tgaaactcga tacccgatta acttcgtcag cacttactct tgcgcttgcc
       61 gctgtggtca tcccgtttac ggcggactgg caattgcctt tgcttaacgg cgtggtggtc
      121 cgatggattg aaaacggaca agcgttatgg ttactgtttg gggcgctatt taccgcctgg
      181 tatatacggc cactttcccg tcccgaaggg gcaaagcagt tttggctatg ggctgttgtc
      241 tggtgggtgg tgctgttggg tagaagcacc agttgggggc gtgactattt ccctgacgag
      301 ccgcgtatgc tgttcagaac gatttcagtg ctattaattg ctgcgttggt attgccagtc
      361 ctgttttttg ccgggctacg taaggagatt gttcgtcgtc tgcgggacgt tcctctgcca
      421 ttgtggctgt ttaccgtgac ggcatgttca tatctgattt ccgacactgt cgagcatcat
      481 cggtggttgt cgccgatatt cctgcataac gctcgttaca cagatttgat tgaagagctt
      541 tatgaagtgc catttatgat cggtttgttt atggtgaccg tggggtttat gcagcaggac
      601 aagcaggatg aatgtactgc gctggagctg accccgtatc acgcaaaata gcgcggctga
      661 aaaagaccat gaattcgata tgggatagat agcagttagc aaaaaaagcc cgcactcggt
      721 gaggcgggca aataatactg gaagcaatgt gagcaatgtc gtaccgaaca ggtgggttat
      781 aaactcaacc actcggtatt gataaagata atcgttatca ttaatgattg caaccctgat
      841 atttatgcgc ttttatccac gacgctaaaa ggtgatggat atcacaaact tcactttcct
      901 gacgatgtgc tattcttttt aacggcaaat aaaccgctaa cgttaagaca taagtgagga
      961 aaaaatgggt attctttcat ggattatttt tggacttatt gcgggtattt tggctaagtg
     1021 gatcatgcca ggtaaagatg gcggcggatt ctttatgacg atcattctgg ggatcgtcgg
     1081 tgcggtagtc ggaggatgga tcagtacgtt ctttggcttt ggcaaagtgg atggtttcaa
     1141 cttcggcagc tttgcagtcg cggtgatcgg cgcgattgtt gtgctgttaa tctacagaaa
     1201 aatcaaaagc taaacgcaga actttcagag ataataaagg ctacgacagg tagcctt
//
LOCUS       DAJVSD010000409         1220 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.412, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000409 DAJVSD010000000
VERSION     DAJVSD010000409.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1220)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1220)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1220
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.412"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..841)
                     /locus_tag="OQP62_004446"
     CDS             complement(<1..841)
                     /locus_tag="OQP62_004446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HCS1723806.1"
                     /translation="MKISLVVPVFNEEATIPIFYKTVREFEELKPYEVEIVFINDGSK
                     DATESIINKIAASDPLVIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVI
                     PHLIEKWQAGADMVLAKRSDRSTDGRMKRKTAEWFYKLHNKISNPKIEENVGDFRLMS
                     RDVVENIKQMPERNLFMKGVLSWVGGKTDVVGYARAERVAGDSKFNGWKLWNLALEGI
                     TSFSTFPLRIWTYIGLFIAGMSFLYGTWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQL
                     IGIG"
     gene            complement(838..1200)
                     /locus_tag="OQP62_004447"
     CDS             complement(838..1200)
                     /locus_tag="OQP62_004447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HCS1723807.1"
                     /translation="MLKLFAKYTSIGVLNTLIHWGVFAFCVYGMHTHQALANFSGFVI
                     AVSFSFYANARFTFNASTTTLRYMMYVGFMGTLSAVVGWMADKCSLPPLLTLVTFSAI
                     SLICGFIYSKFIVFRDAK"
BASE COUNT          371 a          291 c          255 g          303 t
ORIGIN      
        1 tacctattcc tatcaattga acgccaccca ggaaaagtac agaaacaaga agagacgggt
       61 agccaggaac attatttcca aatattaatt tatctataat catccatgta ccgtaaagga
      121 acgacatacc tgcaataaac aatccaatgt acgtccatat gcggagcgga aatgttgaga
      181 aagaagttat tccttccagc gccagattcc ataatttcca gccattgaat tttgaatcgc
      241 cggcaacacg ctcagcgcgg gcgtatccaa ctacatcagt cttgccgccc acccatgaca
      301 gaacgccttt cataaacaga ttacgttctg gcatctgttt aatattttcg acaacatcac
      361 ggctcattaa ccggaaatca ccgacgttct cttcaatttt cggattgctg attttattat
      421 gcagcttata aaaccattca gctgtcttac gcttcatgcg cccgtcagtt gagcggtctg
      481 agcgcttagc cagcaccata tccgcgccag cctgccactt ctcaatgaga tgggggataa
      541 cttctatcgg atcctgtaaa tcgacatcaa taggaatgac cgcatccccg gttgcatggt
      601 cgagacccgc gaaaagagca ggttctttac cgaagtttcg cgtaaacgaa agcggaataa
      661 cgagcggatc agatgcagct attttgttaa ttattgattc agtcgcatct ttgcttccgt
      721 cgttgatgaa aacaatctca acttcatacg gttttaactc ttcaaactcg cgaaccgttt
      781 tatagaaaat aggtatcgtg gcttcttcat tgaagaccgg aacgactaat gagattttca
      841 tttcgcatcc ctaaagacaa tgaactttga ataaatgaat ccgcatatca ggctgatagc
      901 tgaaaaggtg acaagagtaa ggagtggcgg cagggaacat ttgtcagcca tccagccaac
      961 aacggcgctc agtgttccca taaatcccac gtacatcatg tagcgaagcg tggtggtgct
     1021 ggcgttaaag gtgaagcgcg cattggcata gaagctgaac gatacggcga taacaaaacc
     1081 ggaaaagttc gccagcgcct gatgcgtatg catcccatac acacaaaaag caaatacgcc
     1141 ccaatgaata agcgtgttaa gaacaccgat cgatgtgtac ttagcgaata acttcaacat
     1201 tatgaaaatc agcggattcg
//
LOCUS       DAJVSD010000410         1192 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.413, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000410 DAJVSD010000000
VERSION     DAJVSD010000410.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1192)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1192)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.413"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(118..912)
                     /gene="pduF"
                     /locus_tag="OQP62_004448"
     CDS             complement(118..912)
                     /gene="pduF"
                     /locus_tag="OQP62_004448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol diffusion facilitator PduF"
                     /protein_id="HCS1723808.1"
                     /translation="MNDSLKAQCGAEFLGTGLFLFFGIGCLSALKVAGASLGLWEICI
                     IWGLGISLAVYLTAGISGGHLNPAVTIALWLFACFPKQKVLPYIIAQFAGAFGGDLLA
                     YVLYSSLFTEFETAHHMVRGSVESLQLASIFSTYPAAALNVWQAALVEVVITSILMGM
                     IMALTDDGNGIPKGPLAPLLIGILVAVIGASTGPLTGFAMNPARDFGPKLFTWLAGWG
                     NMAMSGGREIPYFIVPIVAPVIGACAGAAIYRYFIGKNLPCNRCKL"
BASE COUNT          357 a          313 c          253 g          269 t
ORIGIN      
        1 aatatcaaaa gtctcccatt gctgggagac gttttgatca gttcgtgaaa gcagatcacg
       61 aaattatctc acctgttttt acgatacatc attgctgtga atctggttcg cattttctta
      121 cagtttacag cggttacaag gtaaattctt accaataaaa tagcgatata tggctgctcc
      181 agcacaggcg ccgataacag gcgcgacaat cggcacgata aaataaggga tctctcgccc
      241 accgctcatc gccatgttcc cccaccccgc taaccatgtg aacagtttgg gaccaaaatc
      301 acgcgccggg ttcattgcaa aaccggtaag gggtccagta gacgcgccga taacggcaac
      361 cagtatccca ataagcaaag gcgcaagcgg ccctttagga ataccattgc catcatccgt
      421 caatgccatg atcatgccca tcaggatcga cgtaatgacc acttccacca acgcagcctg
      481 ccatacattt agcgctgcgg ccggataggt actgaaaatg ctggctaatt gcaaactttc
      541 gacgctaccg cgcaccatat gatgcgcagt ctcaaattca gtaaaaaggc tactataaag
      601 cacatacgcc agcagatcgc cgccaaaagc gccggcaaac tgggcaataa tataaggcaa
      661 tactttctgt ttggggaagc aggcaaacag ccacagcgca atcgtcaccg cagggttaag
      721 atgtccgccg gagattccgg cagtaaggta aacggccagt gaaattccaa gcccccaaat
      781 aatgcaaatc tcccataatc cgaggctggc gcctgcgact ttgagcgcgc tcaaacaacc
      841 gataccaaaa aacaaaaaga gtccggtgcc taaaaattcc gcaccacatt gcgcctttag
      901 agaatcattc atgtgacacc ttctgagcaa agttcgtgtc ctgaccagcg caagtttcgg
      961 ctggcggtag agtacagcta acctcactat aaaaagtgcc gcctgtaaat tgttggcaac
     1021 ctgcgaacct gtctcccgga aaaatcgtgt tgcgatagca aaattttgct tttccgatat
     1081 ttttagcagc ctatcatacg ggagattcga gctataaaat acgcctgtga aaataataaa
     1141 atattgcaca agccaactta tcaatttcga ataagcatca cattttgcgt ct
//
LOCUS       DAJVSD010000411         1186 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.414, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000411 DAJVSD010000000
VERSION     DAJVSD010000411.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1186)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1186)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.414"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..170
                     /locus_tag="OQP62_004449"
     CDS             <1..170
                     /locus_tag="OQP62_004449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000829584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723809.1"
                     /translation="KDERILSHFQRGVEKYAHEYGLDEEAKKRLEDLDVKVVSTVKEF
                     FSAEVISWEPK"
     gene            167..>1186
                     /locus_tag="OQP62_004450"
     CDS             167..>1186
                     /locus_tag="OQP62_004450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000789322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723810.1"
                     /translation="MKNIHSVTDKALYDALNQKQITLNEIQDLFLERGTIICKKTPRK
                     ELARNYSRMTHDYYEHQKIATLLGGQTRTEKITCVRIETGIDKKGIIDAAEKLKKEIT
                     GQDDYCKIIVDGPRVLINIRYLSTNYGKSDFKQAINKEALIEIEPLDDGYSIRRPDNE
                     NLDDYEGLLLGHISAIQNEQADDSNLDLKLNEISLSHNTSADVRTLFFDKLIRTLDGY
                     ELLDVTDAYVYHPKPETIEAEDGNTETGVHVSRASLRGEGVLKSDELSDLYDRGFYIW
                     KIKWKVKENLADPDIFELEAQFGDPLNCTNFSYLVKGVRKYKANGQYFSKPQKLSGRE
                     TERFNK"
BASE COUNT          420 a          181 c          258 g          327 t
ORIGIN      
        1 aaaaagatga gaggattctc tcccattttc aacggggagt tgaaaaatat gcgcatgagt
       61 atgggttaga tgaagaagct aaaaagaggc ttgaagattt agacgttaaa gttgtgtcta
      121 cagtaaaaga attcttctct gcagaagtta tttcttggga gccgaaatga aaaatattca
      181 cagcgtaact gataaagctt tgtatgatgc tttaaaccaa aagcaaatta ccctaaatga
      241 aattcaagac cttttcttag agagaggaac gattatatgt aaaaaaactc ctcgaaagga
      301 attggcaaga aactattctc gaatgactca tgattattac gagcatcaaa aaattgcaac
      361 cctgctaggt ggccagacaa ggaccgaaaa aattacatgt gtaagaattg agactggtat
      421 agataagaaa ggtattatag acgcggcaga aaaacttaag aaagaaatta ccgggcagga
      481 tgattattgt aaaataatcg tggatgggcc gcgagttctg attaatatta gatatctttc
      541 aactaattat ggaaaaagtg atttcaaaca ggctattaat aaagaggcgt taattgaaat
      601 tgagcctctt gatgatggtt acagtatccg tcgtccagat aatgaaaacc ttgacgatta
      661 cgaggggctt ttactggggc acatcagcgc tattcagaac gagcaagcgg atgatagtaa
      721 ccttgattta aaattaaacg aaatttcact ctctcacaat acatctgctg atgttagaac
      781 tttattcttc gataaattaa tccgtacact tgatggctat gagttactgg atgttactga
      841 tgcttatgta tatcacccta agcctgaaac tatagaggct gaagatggaa acaccgaaac
      901 tggagtgcat gtgtctaggg catcacttag gggtgagggg gtacttaaat ctgatgaatt
      961 aagtgatctt tatgatagag gattctatat ctggaaaata aaatggaagg tcaaggagaa
     1021 cttggcagat ccagatatat ttgagcttga ggcccaattt ggtgatcctc tcaattgtac
     1081 taatttctca tatttagtta agggagtcag aaaatataag gcaaacggac aatatttcag
     1141 taagccgcaa aaactctctg gtagagaaac tgagcgattc aataaa
//
LOCUS       DAJVSD010000412         1176 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.415, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000412 DAJVSD010000000
VERSION     DAJVSD010000412.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1176
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.415"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..708)
                     /gene="fimY"
                     /locus_tag="OQP62_004451"
     CDS             complement(<1..708)
                     /gene="fimY"
                     /locus_tag="OQP62_004451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria biosynthesis regulator FimY"
                     /protein_id="HCS1723811.1"
                     /translation="MRSVPCRERHRRLRNAKDCACRYHSPTPQIFDRLELLNQQLNYA
                     LPVGIISQAIITTDNYLGYSLSHYLFSGKRTAAFRSLDDISLWIEKGSLRQLIVDMET
                     LPVSCIEALNQLHALSWQQSDIQIYLLVSDKTPAIAQFIRMAGRFFVLSRRQNLASVR
                     EALLSAAEPRLSESFSRTDWLMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLN
                     LPHRQSFLRLIQQLNVTF"
     gene            complement(727..1038)
                     /locus_tag="OQP62_004452"
     CDS             complement(727..1038)
                     /locus_tag="OQP62_004452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS1723812.1"
                     /translation="MVAQGTLLKERINPPHLASSPTRHSYLNSGLLKSEPIVHLSTAQ
                     LIGYEVLTQLPSEHDSEVFFQQLMLMEGIETSEQRGIAFYAGATMGQGYLWPAILPDI
                     Y"
BASE COUNT          319 a          244 c          283 g          330 t
ORIGIN      
        1 gaaagtaacg tttagctgct ggatcagccg aagaaagctt tgcctgtggg gaaggttaag
       61 gagggtgata agttgtttaa gccggtaaac cacacgatga taaggtacgc tttgctgacg
      121 tgctatttct tttaaagagg caccttgcgc taaagtttca atcatcaacc agtcagtacg
      181 gctaaagctt tccgataagc gaggttcggc ggctgataac aaggcttcgc gtacagaggc
      241 cagattttgt cgtcgcgaca ggacaaaaaa acgcccagcc atacggataa actgagctat
      301 agcgggggtt ttatctgata ccagcaggta aatctggata tcgctttgtt gccaactgag
      361 cgcgtgtagc tggttaagcg cctcaataca ggagacaggt agcgtctcca tatctacaat
      421 cagttgtctg agcgacccct tttcaatcca caaagaaatg tcatctaatg agcggaatgc
      481 tgcggtacgt tttccggaaa ataagtagtg actcaatgaa tagccgaggt agttatcagt
      541 tgtaattatt gcctgagaaa tgataccaac cggcaaggca taatttagct gttggttcag
      601 taactcaagg cgatcaaata tctgcggcgt tggagagtga taacggcagg cgcagtcttt
      661 ggcatttctt aaacggcggt gtctttccct gcatggtacg ctgcgcatcc tgctttttcc
      721 attgctctaa tatatatctg gtaatatggc tggccataaa taaccttgtc ccatcgttgc
      781 accagcgtaa aaagcaatgc ctcgttgctc tgatgtttca atgccttcca tcagcattaa
      841 ctgctgaaaa aaaacttcgc tatcatgttc tgacggaagt tgcgtcagga cctcatagcc
      901 gattaattgc gcagttgaga gatgaacgat tggctcagat tttaacaatc cgctgttgag
      961 atatgaatgg cgtgttggcg aagacgccag gtgtggggga tttatccttt cctttaataa
     1021 agtaccctgt gccaccaaac actccttcag gcatttatga tgcagccata tatttttgac
     1081 ccctgaatct atcaggatat tatgggtatc attgtggcag cgttaaaaaa atgcctgtag
     1141 gtatcgttac ttaattattg gtgagatatt tcgtaa
//
LOCUS       DAJVSD010000413         1169 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.416, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000413 DAJVSD010000000
VERSION     DAJVSD010000413.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1169)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1169)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1169
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.416"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            85..1023
                     /gene="tdcA"
                     /locus_tag="OQP62_004453"
     CDS             85..1023
                     /gene="tdcA"
                     /locus_tag="OQP62_004453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator TdcA"
                     /protein_id="HCS1723813.1"
                     /translation="MNTLVLPKTQHLVVFQEVIRSGSIGSAAKSLGLTQPAVSKIISD
                     VEAYFGVELIVRKNTGVTLTEAGQVLLSWSESITREMKNMINEMNSMTCNTVVDVSFG
                     FPSLIGFTFMSDMIHKFKEVFPKAQVSMYEAQLSSFLPALRDGRLDFAIGTLSNEMQL
                     QDLHVEPLFESEFVLVASKSRTCTGTITLESLKDEQWALPQTNMGYYSELLTTLQRNG
                     ISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTTPFGSNQFITIPIKDTLPVARYAAV
                     WSKNYRIKKAASVLVELAKQYSSYNGCRRRQLIEIE"
BASE COUNT          331 a          260 c          247 g          331 t
ORIGIN      
        1 aatttgtgag tggtcgcaca taacctttaa gatttaattt gctacacttc ctgccgttca
       61 caatgttatt tcagagcggt agatatgaat actcttgttc tccctaaaac acagcatttg
      121 gtggtctttc aggaagtcat tagaagtggt tctatcggtt ctgccgcaaa atcgttaggg
      181 ttaacccaac ccgccgtcag taaaatcatt agcgatgttg aggcctattt tggcgttgag
      241 ctaattgtac gcaaaaatac cggcgttacg ttgaccgaag cgggacaggt actgctttcc
      301 tggtctgaat ctatcacccg cgaaatgaaa aacatgatca acgagatgaa cagtatgacg
      361 tgcaataccg ttgtcgacgt ctcgtttggt tttccttcgc tgattggctt taccttcatg
      421 tccgatatga ttcataagtt caaagaggta tttccaaaag cgcaggtatc catgtacgaa
      481 gcccagctct cttcattcct gccggccctg cgcgacgggc ggctggactt tgctatcggt
      541 acgctcagta atgaaatgca gctacaggat ctgcatgtcg agccgctgtt tgaatcagag
      601 tttgtcctgg tagccagcaa gtcccgaaca tgcaccggca ccatcacact ggaatcgtta
      661 aaggacgaac agtgggcgtt gccgcaaacg aatatgggct actacagcga attactcacc
      721 actctacaac gaaatggcat cagcatcgaa aacattgtta aaacagattc cgttgtcaca
      781 atatataatc ttgttctcaa tgctgatttc ttaactgtta ttccctgcga tatgaccacg
      841 ccttttggct ctaatcaatt tatcacgata ccaatcaaag acacattacc cgtcgcacgt
      901 tatgcggcgg tatggtctaa aaattatcgt atcaaaaaag ccgcttcagt attagtagaa
      961 ttggctaagc aatattcatc atataatgga tgcagacgca ggcagttaat agaaattgaa
     1021 tgatatggaa taaacatatt tagcgaaatt gacgccacct gtttcttttg aacagtgggc
     1081 aacggtaact tatttttaat acccaggtta agaggttata atgcacatta catacgatct
     1141 cccggttgca attgaagata tcctcgaag
//
LOCUS       DAJVSD010000414         1162 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.417, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000414 DAJVSD010000000
VERSION     DAJVSD010000414.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.417"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            111..>1162
                     /gene="pipB2"
                     /locus_tag="OQP62_004454"
     CDS             111..>1162
                     /gene="pipB2"
                     /locus_tag="OQP62_004454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector PipB2"
                     /protein_id="HCS1723814.1"
                     /translation="MQRSLDSLAGMATSAFGAGTSAAMRQATSPKTILQHIINFFTCG
                     GIRRRNETQYQELIETMAETLKSSMSDRGAPLPENIILDDVDGCRVEFNLPGENNEAG
                     QVIVRVSKGDNSETREIPLASFEKICRALLFRCEFSLPQDSVILTAQGGMNLKGAVLT
                     GANLTAENLCDADLSGADLEGAILFMADCDGANFKGANLSGASLGDSNLTNACLEDSI
                     MCGATLDRANLTGANLQHTSLLGCSMVECNCSGANMDHANVSGSTLIRADMSGATLKG
                     ATIMAAIMEGAVLTRANLQKASFTATNLDGADLSEANLRNTSFKDCTLTDLRTEDATM
                     STSTQTLFNVFYSENI"
BASE COUNT          331 a          226 c          275 g          330 t
ORIGIN      
        1 gatgcgtgat tatgtaacca gacgcaaagg gggtattcac cttatttcta aatgcaaatc
       61 taatgataaa ttttatcatg tactgtgttg ctctctctgg gagaaaatat atgcagcgtt
      121 cactcgatag tctggctggt atggctacat ctgcttttgg cgcggggact tctgctgcta
      181 tgcggcaagc tacctcgccc aaaaccattc tgcaacatat cattaacttt tttacctgtg
      241 gtgggatacg tcggagaaat gaaacacaat atcaggaatt gatagagact atggctgaaa
      301 cattgaaaag ttcaatgtct gacagaggtg ctccgttgcc agaaaacatc atcctggatg
      361 atgtggatgg gtgtcgtgtc gaatttaatc ttcctggtga gaataacgaa gctggacaag
      421 ttattgtacg agtcagtaaa ggcgacaatt ctgagacaag agaaattccg cttgcctctt
      481 ttgaaaaaat atgtcgagct ttactattca gatgcgaatt ttctcttcct caggattctg
      541 taatattaac tgcccaggga ggcatgaatc ttaaaggcgc tgtccttacc ggagcaaatc
      601 tgacggcaga aaatttatgt gacgcagact taagcggcgc agatttagag ggggcaatac
      661 tgtttatggc ggattgtgac ggtgcaaatt ttaagggcgc aaatctatcg ggagcatcat
      721 taggcgacag taacttaacg aacgcctgtc tggaagatag tattatgtgt ggcgctaccc
      781 tcgatcgcgc taatcttact ggcgccaatt tacaacacac aagtctgtta ggctgtagca
      841 tggtagaatg taattgttcc ggtgcgaata tggatcacgc taatgtttca ggctcaaccc
      901 ttatacgtgc cgatatgagc ggtgcgacat taaagggtgc tactataatg gctgctatta
      961 tggaaggcgc tgtcttaact cgggcaaacc tgcaaaaggc tagttttact gctacgaacc
     1021 tggacggggc tgatttgtct gaggctaatt taagaaatac cagttttaaa gattgtacac
     1081 taaccgattt gcgtaccgaa gacgccacaa tgtctacaag tacacaaaca ctttttaacg
     1141 tattttatag tgaaaatatt ta
//
LOCUS       DAJVSD010000415         1132 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.418, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000415 DAJVSD010000000
VERSION     DAJVSD010000415.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1132
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.418"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(5..1060)
                     /locus_tag="OQP62_004455"
     CDS             complement(5..1060)
                     /locus_tag="OQP62_004455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent cysteine synthase family protein"
                     /protein_id="HCS1723815.1"
                     /translation="MMSSNWVKNAINEINADHQRSADTHLIRLPLSAFPGIQLYLKDE
                     STHPTGSLKHRLARSLFLYGLCNGWIKEDTPIIEASSGSTAISEAWFARLLGLPFIAA
                     MPACTAKRKIEQIQFYGGHCHFVESACEIYAASERLAHELNGHYMDQFTYAERATDWR
                     GNNNIADSIFRQMRNEPHPVPRFIVMSAGTGGTSATIGRYIRCQGYDTQLMVVDPENS
                     VFLPYWQDRDASLRSPVGSKIEGIGRPRVEPSFIPDVVDEMLRVPDAASVATAHWLET
                     QLGRKVGASTGTNMWGALQLAARMREAGETGAIVTLLCDSGDRYLDTYYHPAWVSDHI
                     GDLTPWSAAIAKLLTGD"
BASE COUNT          267 a          301 c          299 g          265 t
ORIGIN      
        1 gtttctagtc gccggtaagt aattttgcga tggccgctga ccacggcgtc aaatcgccga
       61 tatggtcgct aacccaggcc ggatggtaat aggtatccag atagcgatcg ccgctatcgc
      121 acaataacgt cacgatagcg ccggtttctc cagcctcgcg catccgggcc gctagctgca
      181 gcgctcccca catattcgtg ccggtagagg cgccgacttt acggcctagc tgcgtttcca
      241 gccagtgtgc ggtggcaacg ctggcggcgt ccggcacgcg cagcatctca tccacgacat
      301 ccggaataaa agaaggctct actcgcggac gaccaattcc ttcaatttta ctgcctaccg
      361 ggctgcgtaa tgaagcgtcg cgatcctgcc agtaaggtaa aaagacagaa ttttccggat
      421 ccaccaccat gagctgagta tcatagccct ggcagcgaat atagcgccca atcgtcgcag
      481 aggttccgcc cgttccggcg ctcatgacga taaatcgcgg taccggatgg ggttcgttgc
      541 gcatctggcg gaaaatactg tcggcaatat tattgttgcc ccgccagtcg gtagctcgtt
      601 ctgcgtaggt aaactggtcc atatagtgac cgttcagttc atgcgccagc cgctcggagg
      661 cggcataaat ttcgcaggcg ctctccacaa aatgacagtg gccgccgtaa aattgaatct
      721 gttcgatttt acgttttgcg gtacaggcgg gcatggcggc gatgaacggc agtcccagta
      781 aacgcgcgaa ccaggcttcg gaaatcgccg ttgagcctga tgacgcttca ataatcggag
      841 tgtcttcttt aatccagcca ttgcacaacc cataaaggaa cagcgagcgc gccagacgat
      901 gcttgaggct accggtggga tgcgtgcttt cgtctttcag gtaaagctgg atacctggaa
      961 atgccgacag gggcaaacga ataagatgcg tatccgctga gcgctggtgg tcagcgttaa
     1021 tttcattaat ggcattttta acccaattgc tactcatcat taatatccat ttatcatttt
     1081 gtgccaagag tagcgaaaag tacggaaaaa attgttgcta tttgaccttt aa
//
LOCUS       DAJVSD010000416         1108 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.419, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000416 DAJVSD010000000
VERSION     DAJVSD010000416.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1108)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1108)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.419"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            1..899
                     /locus_tag="OQP62_004456"
                     /pseudo
     CDS             1..899
                     /locus_tag="OQP62_004456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459704.1"
                     /note="catalyzes the formation of UDP-galactofuranose from
                     UDP-galactopyranose; frameshifted; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
     gene            896..>1108
                     /locus_tag="OQP62_004457"
     CDS             896..>1108
                     /locus_tag="OQP62_004457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HCS1723816.1"
                     /translation="MMKCTALIVTFNRLEKLKKSVRETVKAGFSSIVIVNNGSSDGTR
                     EWLSSLSEPGITILNLKDNLGGAGGFK"
BASE COUNT          337 a          205 c          220 g          346 t
ORIGIN      
        1 aaggttaagg ccacagtaaa tggtcaggta ttttctctac ctatcaatct tcataccatc
       61 aatcaatttt ttggtgtcgc ctgctcacct gatgacgcca ggaaattact gcttcaaaaa
      121 tgtgatagca ccattctgga accacaaaat tttgagcaac aggccttgcg tttcattggt
      181 aaagagttat atgaagcctt ttttaaaggt tataccatta aacaatgggg gcttcatcct
      241 tccgcgttac ccgcttctgt attgaaacgt atccctgttc gttttaatta tgatgataac
      301 tatttcaatc ataagtttca gggaatacca aaatttggtt atacacaaat ggtcaagtcc
      361 attgtcgaac acgaaaatat cgctgttgaa ctatgtcgct ccttcactca agaaatgcgg
      421 acaaattatg atcatgtttt tttcagtggc gcgctggatg ccttttactc ctgtcaatat
      481 ggccgactgg aatatcgtac attagacttt aaaaaaataa tttgccagag tgattatcaa
      541 ggatgcgcag taatgaatta ttgttcaata gatactcctt atactcggat tactgagcac
      601 aaatattttt ctccgtggga gagacatgaa gcttcaatat gttatcaaga atatagtcgg
      661 gaatgtgaag ctggtgatat accctactat cctgttcgca gggcagataa aatggattta
      721 ctgaataaat atctgtcgcg ggctaaaaaa gaaaaaatat tactttcatt ggtcgtcttg
      781 gcacttatcg ttatctcgat atggacatca cgatagctga agcattacag acggcggacg
      841 tatacttaac gtcgctatat gaacaaaaag aaatgccagc ttttacagtt accgtttgat
      901 gaagtgtaca gcgctaatcg taacttttaa tcgtcttgaa aaattaaaaa aaagtgtgcg
      961 agagactgtt aaggcgggtt tttcctctat tgttatcgtt aataatggct caagcgacgg
     1021 taccagggaa tggctttctt cattaagtga acctggcatc acgatactta atcttaaaga
     1081 taatcttggt ggtgctggcg gatttaaa
//
LOCUS       DAJVSD010000417         1101 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.420, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000417 DAJVSD010000000
VERSION     DAJVSD010000417.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1101)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1101)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1101
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.420"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(3..>1101)
                     /gene="chaA"
                     /locus_tag="OQP62_004458"
     CDS             complement(3..>1101)
                     /gene="chaA"
                     /locus_tag="OQP62_004458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sodium-potassium/proton antiporter ChaA"
                     /protein_id="HCS1723817.1"
                     /translation="THACEAVKTRHKETSLIFPVLALVVLFLWGSSQSLPVVIGINIL
                     ALIGILSSAFSVVRHADVLAHRLGEPYGSLILSLSVVILEVSLISALMATGDAAPTLM
                     RDTLYSIIMIVTGGLVGFSLLLGGRKFATQYMNLFGIKQYLIALFPLAIIVLVFPMAL
                     PQANFSTGQALLVALISAAMYGVFLLIQTKTHQSLFIYEHEDEGDDDNPHHGKPSAHS
                     SGWHTVWLLIHLIAVIAVTKMNASPLEALLTSMNAPVAFTGFLVALLILSPEGLGALK
                     AVLNNQVQRAMNLFFGSVLATISLTVPVVTLIAWATGNDLVFGLGAPEMVVMVASLVL
                     CHISFSTGRTNVLNGAAYLALFAAYLMTIFA"
BASE COUNT          327 a          291 c          263 g          220 t
ORIGIN      
        1 tatcaggcaa aaatcgtcat cagataggcg gcaaataaag ccagatacgc cgcgccgttt
       61 agcacgttgg tgcgtccggt agagaacgaa atatggcaca gcactaacga ggccaccatc
      121 actaccattt ccggcgcgcc taaaccaaac accagatcat tacctgtcgc ccatgcgatg
      181 agcgtgacga ccggcacggt taatgaaatc gtcgccaaca ccgatccgaa gaacagattc
      241 attgcccgct gaacctgatt attcagtacc gccttcagcg cgcccagtcc ttccggcgag
      301 agaattaaca gcgcgaccag gaaaccggta aaggcgaccg gagcgttcat gctggtcagc
      361 aacgcctcca gcgggctggc attcattttg gtaacggcaa tgaccgcaat taaatgaatg
      421 agtaaccaga ccgtatgcca gccgctactg tgcgcggagg gtttaccgtg gtgtggattg
      481 tcatcatcgc cttcatcttc atgttcatag ataaataagc tctggtgcgt tttggtttga
      541 atcaacaaaa atacgccgta catcgcggcg gaaattaacg cgaccaataa tgcctgacca
      601 gtagaaaaat tggcttgcgg caatgccatg ggaaaaacca gcacaataat cgccagcgga
      661 aatagcgcga taagatactg cttaatccca aataaattca tatattgcgt tgcgaattta
      721 cgcccgccca acaacaacga aaaaccgacc agtcccccgg tgacaatcat aataatagag
      781 tagagcgtat cgcgcataag cgttggcgca gcatcgccgg tagccatcag cgcggaaatt
      841 aaactcacct caagaataac gacggacagg cttaaaataa gcgatccgta gggttcgccg
      901 agtcggtgcg ctaatacatc ggcatgacgg accacgctaa atgcgctgct taaaatacca
      961 ataagtgcaa ggatattgat gccaataacc actggtagtg actggctact tccccaaagg
     1021 aacagcacta ccagcgcaag aaccgggaaa ataagcgaag tctccttatg gcgggttttc
     1081 accgcctcac aggcatgtgt c
//
LOCUS       DAJVSD010000418         1093 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.421, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000418 DAJVSD010000000
VERSION     DAJVSD010000418.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1093
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.421"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            174..>1093
                     /gene="hilD"
                     /locus_tag="OQP62_004459"
     CDS             174..>1093
                     /gene="hilD"
                     /locus_tag="OQP62_004459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator HilD"
                     /protein_id="HCS1723818.1"
                     /translation="MENVTFVSNSHQRPAADNLQKLKSLLTNTQQQIKSQTQQVTIKN
                     LYVSSFTLVCFRSGKLTISNNHDTIYCDEPGMLVLKKEQVVNVTLEEVNGHMDFDILE
                     IPTQRLGALYALIPNEQQTKMAVPTEKAQKIFYTPDFPARREVFEHLKTAFSCTKDTS
                     KGCSNCNNKSCIENEELIPYFLLFLLTAFLRLPESYEIILSSAQITLKKRVYNIISSS
                     PSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDIYLSARMNQAAKLLRIGNHNVNAV
                     ALKCGYDSTSYFIQCFKKYFKTTPSTFIKMA"
BASE COUNT          366 a          226 c          208 g          293 t
ORIGIN      
        1 ccatcatccc cattggggct taaactactg tagataaatt acccaaattt gggttctttt
       61 ggtgtaacaa tcagaccatt gccaacacac gctaataaag agcatttaca actcagattt
      121 tttcagtagg ataccagtaa ggaacattaa aataacatca acaaagggat aatatggaaa
      181 atgtaacctt tgtaagtaat agtcatcagc gtcctgccgc agataactta cagaaattaa
      241 aatcactttt gacaaatacc cagcagcaaa ttaaaagtca gactcagcag gttaccatca
      301 aaaatcttta tgtaagcagt ttcactttag tttgctttcg gagcggtaaa ctgacgatta
      361 gcaataatca cgatacgatt tactgtgacg aacctgggat gttggtgctc aaaaaagagc
      421 aggtagttaa cgtgacgctt gaagaggtca atggccacat ggatttcgat atactcgaga
      481 taccgacgca acgacttggc gctctctatg cacttatccc aaacgagcag caaaccaaaa
      541 tggcggtacc cacagagaaa gcgcagaaaa tcttctatac acctgacttt cctgccagaa
      601 gagaggtatt tgaacatctg aaaacggcgt tctcctgtac gaaggataca agcaaaggtt
      661 gcagtaattg taacaacaaa agttgtattg aaaatgaaga gttaattcct tattttctgc
      721 tgttcctgct tactgctttt ctccgactcc ctgagagtta tgagatcatc cttagctcgg
      781 ctcagataac gttaaagaag cgcgtttaca acattatatc ttcgtcaccc agtagacagt
      841 ggaagcttac ggatgttgcc gatcatatat ttatgagtac gtcaacgctc aaacggaaac
      901 ttgcagaaga aggtaccagc tttagcgata tctacttatc ggcaagaatg aatcaggcag
      961 caaaactttt acgcataggc aaccataatg ttaatgctgt agcattaaaa tgtggttatg
     1021 acagcacgtc ctacttcatt caatgtttca aaaaatattt taaaactacg ccatcgacat
     1081 tcataaaaat ggc
//
LOCUS       DAJVSD010000419         1074 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.422, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000419 DAJVSD010000000
VERSION     DAJVSD010000419.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1074)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1074)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.422"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(88..164)
                     /locus_tag="OQP62_004460"
     tRNA            complement(88..164)
                     /locus_tag="OQP62_004460"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(128..130),aa:Arg,seq:cct)
     gene            complement(569..>1074)
                     /gene="pagC"
                     /locus_tag="OQP62_004461"
     CDS             complement(569..>1074)
                     /gene="pagC"
                     /locus_tag="OQP62_004461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="virulence membrane protein PagC"
                     /protein_id="HCS1723819.1"
                     /translation="NVAQADTNAFSVGYAQSKVQDFKNIRGVNVKYRYEDDSPVSFIS
                     SLSYLYGDSQDSGSIESEGIHYHDKFEVKYGSLMVGPAYRLSDNFSLYALAGVGTVKA
                     TFKEHATQDGDSFSNKISSRKTGFAWGAGVQMNPLENIVVDVGYEGSNISSTKINGFN
                     VGIGYRF"
BASE COUNT          303 a          254 c          225 g          292 t
ORIGIN      
        1 acttattcaa aactgaagtg gtcagtggga gtcgaaccca catcatcagc ctgacactga
       61 ggtaataaca ttatacgata accacattgg accgccaccg aggcctcgaa cctcgcacca
      121 tcaacttagg aggttgatgc tctatccagc tgagctagtg gcggctgggg acttctgcca
      181 ggcgcaaaaa aggtgctctc ctagataaaa tacatacctt gctacttttt agtagtcgtt
      241 caacggcagg tacaatatgc gaaggcgatc acaaaatctt gatgacattg tgattaattc
      301 caggaaaatt tttcagagtg aatcctgtga gatctagcgt tatttacacc agattttcct
      361 tcctgcttat cacctacctg agcaaccttg attgcttacc acaatccttt atctgtgctt
      421 atgctggtga gatattatgt acagcgtcac tatgacgaag agagtatgac gaagagagaa
      481 aagacaggca ggtacgtgtt actggtaaag aagccctgtt ttgtaactgg cggtgcggaa
      541 ggcgaacctt ccgcatagct tatgcttttc agaaacggta tccaattccg acgttgaagc
      601 cgtttatttt tgtagaggag atgttgcttc cttcataccc aacatcgacg acgatattct
      661 ccagcggatt catctgtaca cccgcgcccc aggcaaatcc cgttttcctt gaggaaattt
      721 tgttagaaaa agaatcgcca tcctgagtgg catgttcttt aaatgtcgcc tttaccgtgc
      781 cgacacctgc cagcgcgtat aacgaaaaat tgtcagacaa tcgataggct ggcccaacca
      841 ttaaagaacc atatttcacc tcaaacttgt catggtaatg gataccttca gactcaatag
      901 acccggaatc ctggctgtct ccatataagt aacttagcga ggaaataaaa cttaccggag
      961 agtcatcctc ataacggtat ttcacattta cccctcggat atttttgaaa tcctgaactt
     1021 tactttgtgc ataccccacg gaaaaggcgt tagtatcggc ctgtgcaaca ttta
//
LOCUS       DAJVSD010000420         1049 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.423, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000420 DAJVSD010000000
VERSION     DAJVSD010000420.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.423"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(184..>1049)
                     /gene="sirC"
                     /locus_tag="OQP62_004462"
     CDS             complement(184..>1049)
                     /gene="sirC"
                     /locus_tag="OQP62_004462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcriptional regulator SirC"
                     /protein_id="HCS1723820.1"
                     /translation="SVEAISNNHLQQPNKFPLINGLADVRDYYVANCLLFKLNKGSLR
                     IENEFGEFIEQSALCLFLLEKDQTITLSMSEIEGHIDFSSLEVSYDLMQKFYKVFYST
                     RNYNDRELSLKTKPKYFFHADLLPGMSDTFDSILHGVACPRVCSNVSIDDHDYSYFSL
                     MYLISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWSQAEVAGKLFMSVSSLK
                     RKLAAEEVSFSKIYLDARMNQAIKLLRMGAGNISQVATMCGYDTPSYFIAIFKRHFKI
                     TPLSFMRTMNH"
BASE COUNT          336 a          211 c          171 g          331 t
ORIGIN      
        1 ctcttagagt acaacgattg cctgacgcct tgtggccatg tatgtctgac aatgaacgct
       61 ttcggttccc tttcattagc tacatatcac tggtgtagcg atactgaaat atacactatg
      121 attaaaaaaa tatttggtat ctgtaacgca aacagatagt aacgtttaaa ataatttcac
      181 aaatcaatgg ttcattgtac gcataaagct aagcggtgta atcttaaaat gccgtttaaa
      241 aatagcgata aaataagaag gcgtatcata gccacacatc gtcgcgactt gtgaaatatt
      301 tccagcaccc atacgtaata attttatagc ctgattcata cgagcatcca agtatatttt
      361 gctaaaactc acctcttcag cggccagttt tcgcttcaga cttgatacgc tcataaacag
      421 ctttcctgcc acctcagcct gtgaccattt gcgggtgaga tcgctgataa taatgttata
      481 aactttctct tttgttgtaa tttttattgc tcgctcaagg aaatcaaacc caccgggctt
      541 acgtacaaat gccgatataa gatacatcaa tgagaaatat gaataatcat gatcatcaat
      601 actcacatta ctacaaaccc gtggacatgc gacaccatgc aaaatagagt caaaagtatc
      661 actcatccct ggcaacaagt ccgcatgaaa aaaatacttt ggtttcgttt ttaatgatag
      721 ctctcgatca ttatagtttc ttgtactgta aaaaactttg tagaattttt gcattaagtc
      781 ataggaaact tccagtgaag aaaaatcaat atgtccttct atttcgctca tactaagcgt
      841 gattgtttga tctttttcca ataaaaataa acacagcgca gattgttcga tgaactcccc
      901 aaattcgttt tcaattcgca aactgccttt attaagttta aacaataagc agtttgcgac
      961 ataatagtct cttacgtcag ctaatccatt tattaatgga aatttgttcg gttgttgaag
     1021 gtgattattg ctaatggcct caactgatt
//
LOCUS       DAJVSD010000421         1037 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.424, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000421 DAJVSD010000000
VERSION     DAJVSD010000421.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1037)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.424"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(197..409)
                     /gene="cspF"
                     /locus_tag="OQP62_004463"
     CDS             complement(197..409)
                     /gene="cspF"
                     /locus_tag="OQP62_004463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock-like protein CspF"
                     /protein_id="HCS1723821.1"
                     /translation="MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACRQHETEA
                     LIPGIRVEFCRINGLRGPTAANVYLS"
     gene            complement(541..804)
                     /gene="pagD"
                     /locus_tag="OQP62_004464"
     CDS             complement(541..804)
                     /gene="pagD"
                     /locus_tag="OQP62_004464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence protein PagD"
                     /protein_id="HCS1723822.1"
                     /translation="MKHHAFMLWSLLIFSFHVLASSDHCSGLQQASWEIFIYDFGSKT
                     PQPPTNTDKKQARQISSPSCPTAKPMMSAPTNDARKGNTFSRT"
BASE COUNT          307 a          184 c          233 g          313 t
ORIGIN      
        1 cttcacgtta aacaaagtga gaaggggggt tgacacccga tatatgataa aagaggtcac
       61 aggagtcatt agcaaaataa atcttttaga ttttcgccac tgaaaacatt ctgcagcctt
      121 tcaggcaaag cctcatagca gactgcggag gtatacgtac tcgctaaatt tttctgaaaa
      181 aatgccgggt gacgaattat gaaagataaa cgttggcggc ggtaggtccg cggagtccat
      241 taatacgaca aaactcaacg cgtataccgg ggataagagc ttctgtttcg tgttggcgac
      301 atgctgaaat gtggacctga acatctttgc gtccatcgga gggggtgatg agacctttac
      361 cgctcttaca atcaaaggtt ttgacaattc ctgtcatttt acgagacaaa caaattcctt
      421 aatggggata acgaggcgca ctatacacgt caggaaaaat aatgccagct atatttgatg
      481 gcaatcaaga tttccggatg gctaaaagta gtcgttcggc accattgtag ataaataaca
      541 ttatgttctg gagaaagtat tccctttcct ggcgtcgttg gttggtgcgg acatcatggg
      601 ttttgccgtc gggcaggatg gtgaactaat ctgcctggct tgctttttat cggtatttgt
      661 aggtggttgc ggggttttac taccaaaatc gtagataaaa atttcccatg atgcctgttg
      721 taaaccagaa caatggtctg aactggccaa aacatggaat gaaaaaataa gtaatgacca
      781 aagcataaaa gcatgatgtt tcatagcacc tcctgttata tgtaatgact tgcgaagttc
      841 atctaattaa ttatgggacg tcattggcat tttttattca acgaagagtt aaccactctt
      901 aataataatg ggttttatag caaaatagac ttttttatcg agtgttcaat atttgcgtcc
      961 gttattattt ttctggaatg taaattctct ctcaacacag gtgaaattta tgtttgaatt
     1021 gtggtgttga ttctatt
//
LOCUS       DAJVSD010000422         1034 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.425, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000422 DAJVSD010000000
VERSION     DAJVSD010000422.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.425"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            254..975
                     /gene="sopE2"
                     /locus_tag="OQP62_004465"
                     /pseudo
     CDS             254..975
                     /gene="sopE2"
                     /locus_tag="OQP62_004465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460811.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-1 type III secretion system guanine
                     nucleotide exchange factor SopE2"
BASE COUNT          356 a          195 c          222 g          261 t
ORIGIN      
        1 gtgacgcagc agttgaattg aagtgatgtt ttgcctgttc aggattgtcc cgataaaaat
       61 gttcctcgat aaaagtcgat caccttgcgc cgaaaaaaaa caggctaagt gacagaagaa
      121 caaaatccat caggaaaata aaatttataa atatcaatga gtaaaaatgg ttgtggagaa
      181 ggtggctatt ttttgaaagc aagaaatata aacaaagtgt agctatgcat agttatctaa
      241 aaggagaact accgtgacta acataacact atccacccag cactacagaa tccatagaag
      301 tgacgttgaa ccagtaaaag aaaaacaacg gagaaggaca tttttgcaaa aagtattact
      361 gccgttagaa atagctttat cagcctgtcg acgagtctgt cagatcgttt tagcctgcat
      421 caacaaacag acataccgac tacccatttt catcgtggga gcgcctctga gggtagggca
      481 gtattaacca gtaaaactgt taaagatttt atgctgcaaa agctcaatag cctggatatc
      541 aaaggtaatg cgagtaaaga tccggcctat gctcgtcaga catgcgaagc catattatca
      601 gccgtgtaca gtaataataa agatcactgt tgtaaattac tcatcagtaa aggggtcagt
      661 attaccccct ttctgaaaga gataggagag gctgcgcaga atgcggggct acctagggag
      721 ataaaaaatg gtgtatttac tccaggtggg gcaggggcga atccttttgt cgtccccctc
      781 attgctgcag cgagcattaa atatccgcat atgtttataa atcataatca gcaggtgtct
      841 tttaaagcgt atgctgagaa aatcgttatg aaagaggtta cgccgctgtt taataagggg
      901 acgatgccga cgccacaaca atttcagtta actatagaaa atattgcgaa taagcatctt
      961 cagaatgcct cctgaagata gcaaacacaa taccgctatt aaccgtatga attaatagca
     1021 gattttctga aact
//
LOCUS       DAJVSD010000423         1011 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.426, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000423 DAJVSD010000000
VERSION     DAJVSD010000423.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1011)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1011)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1011
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.426"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..>1011
                     /locus_tag="OQP62_004466"
     rRNA            <1..>1011
                     /locus_tag="OQP62_004466"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          254 a          235 c          318 g          204 t
ORIGIN      
        1 ggttgtaaag tactttcagc ggggaggaag gtgttgtggt taataaccgc agcaattgac
       61 gttacccgca gaagaagcac cggctaactc cgtgccagca gccgcggtaa tacggagggt
      121 gcaagcgtta atcggaatta ctgggcgtaa agcgcacgca ggcggtctgt caagtcggat
      181 gtgaaatccc cgggctcaac ctgggaactg cattcgaaac tggcaggctt gagtcttgta
      241 gaggggggta gaattccagg tgtagcggtg aaatgcgtag agatctggag gaataccggt
      301 ggcgaaggcg gccccctgga caaagactga cgctcaggtg cgaaagcgtg gggagcaaac
      361 aggattagat accctggtag tccacgccgt aaacgatgtc tacttggagg ttgtgccctt
      421 gaggcgtggc ttccggagct aacgcgttaa gtagaccgcc tggggagtac ggccgcaagg
      481 ttaaaactca aatgaattga cgggggcccg cacaagcggt ggagcatgtg gtttaattcg
      541 atgcaacgcg aagaacctta cctggtcttg acatccacag aactttccag agatggattg
      601 gtgccttcgg gaactgtgag acaggtgctg catggctgtc gtcagctcgt gttgtgaaat
      661 gttgggttaa gtcccgcaac gagcgcaacc cttatccttt gttgccagcg gtccggccgg
      721 gaactcaaag gagactgcca gtgataaact ggaggaaggt ggggatgacg tcaagtcatc
      781 atggccctta cgaccagggc tacacacgtg ctacaatggc gcatacaaag agaagcgacc
      841 tcgcgagagc aagcggacct cataaagtgc gtcgtagtcc ggattggagt ctgcaactcg
      901 actccatgaa gtcggaatcg ctagtaatcg tggatcagaa tgccacggtg aatacgttcc
      961 cgggccttgt acacaccgcc cgtcacacca tgggagtggg ttgcaaaaga a
//
LOCUS       DAJVSD010000424          997 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.427, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000424 DAJVSD010000000
VERSION     DAJVSD010000424.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..997
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.427"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..424
                     /locus_tag="OQP62_004467"
     CDS             <1..424
                     /locus_tag="OQP62_004467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459688.1"
                     /note="sensory histidine kinase in two-component
                     regulatory system with KdpE; signal sensing protein;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     KdbD"
                     /protein_id="HCS1723823.1"
                     /translation="GLLHPITLSLPQQLTLIHVDGPLFERVLINLLENAVKYAGPQAS
                     IGIDAAVKDNRLQLDVWDNGPGIPAGQEQKIFDKFARGNKESAVPGVGLGLAICHAIV
                     EVHGGTLTAYNRPQGGACFRVTLPQGKPPELDDFHEDM"
     gene            421..>997
                     /gene="kdpE"
                     /locus_tag="OQP62_004468"
     CDS             421..>997
                     /gene="kdpE"
                     /locus_tag="OQP62_004468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator KdpE"
                     /protein_id="HCS1723824.1"
                     /translation="MTNVLIVEDEQAIRRFLRAALEGDGLRVYEAETLQRGLLEAATR
                     KPDLIILDLGLPDGDGIDFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKP
                     FGIGELQARLRVALRRHAASPCADPIVRFSGVTVDLAARLIHRGDEEIHLTPIEFRLL
                     AVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYL"
BASE COUNT          206 a          275 c          292 g          224 t
ORIGIN      
        1 gggtttattg catccgatta cattgtcgct gccgcaacag ttaacgctta tccatgtcga
       61 tggcccctta tttgagcgtg tcctgatcaa cttgctggaa aacgccgtta agtacgccgg
      121 gccgcaggcc agtatcggca ttgatgctgc ggttaaggac aatcgtttac aactggatgt
      181 ctgggataat gggccgggta ttcctgcggg gcaagaacag aagattttcg ataagttcgc
      241 ccgcggcaac aaagagtccg ccgtccccgg cgtggggctg gggctggcga tttgccatgc
      301 tatcgtagag gtacacggcg gcacgcttac cgcctataat cgaccgcagg gcggcgcctg
      361 tttccgtgtg acgctgccgc aaggaaagcc acctgaactt gacgattttc atgaggatat
      421 gtgacaaacg ttctgattgt tgaagatgaa caggccatcc gccgctttct gcgcgccgcg
      481 ctggaaggcg acggcctgcg cgtgtatgaa gctgaaacat tacaacgtgg tttactggaa
      541 gccgccacgc gaaagcccga tctgattatt ctcgatctcg gcctgccgga cggcgacgga
      601 atcgatttta ttcgcgacct gcgtcagtgg agcgcaatac cggtgattgt cctttccgcc
      661 cgcagcgaag aaagcgataa gattgccgcg cttgacgccg gagctgatga ttacctgagc
      721 aagccattcg gcattggcga gttgcaggcg cgtttgcgtg tcgcgctgcg acggcacgcc
      781 gccagccctt gcgccgatcc gatcgtccgc ttttccggcg tgacggtcga tctcgccgca
      841 cggttgatcc accgtggcga cgaagaaatc catctgacgc cgattgagtt ccgcctgctg
      901 gcggtattac tcaataatgc cggcaaggta ttaacccaac ggcagttatt aaaccaggtc
      961 tggggcccta acgccgtgga gcatagccac tatttgc
//
LOCUS       DAJVSD010000425          964 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.428, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000425 DAJVSD010000000
VERSION     DAJVSD010000425.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.428"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..782
                     /locus_tag="OQP62_004469"
     CDS             <1..782
                     /locus_tag="OQP62_004469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014913955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HCS1723825.1"
                     /translation="DLNYNPSESHPEKLKKLWQIACGLSDIHSAKVIHRDIKPNNIRV
                     DENKIVKILDFGLARTSGTEAFTHSVIGTLGYMAPELWKRKNISFDQKIDVYAYGVLV
                     LDLFGIEKPDELYEHPPAAITNIPELGKILPKDLARTFISCLSHDKYARPAMSSVRDQ
                     IAKYLLKDRHRALFVLNGKKYEINAKNKSVTITWGTSGSMEIVYDGFDFKVGNFSGSA
                     TINNQQVITNKVFPSCSVITLINEKSRSFVTFDISRPEVIS"
     gene            779..>964
                     /locus_tag="OQP62_004470"
     CDS             779..>964
                     /locus_tag="OQP62_004470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000573562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HCS1723826.1"
                     /translation="MIEVGRIIAERYKILSYVGKGGMQDVYKVLDLKLDLDLALKTPL
                     PGLESKRFLKSAKIAAKI"
BASE COUNT          351 a          153 c          185 g          275 t
ORIGIN      
        1 tggatttaaa ttataacccg tcagaaagtc accccgaaaa actaaagaaa ttatggcaga
       61 tagcatgcgg gttaagtgac atccactctg ctaaagtaat tcacagagat ataaagccca
      121 ataatattag agtagacgag aataaaattg ttaaaatatt agattttggt ttagcaagga
      181 cctcaggcac agaagcattc actcattctg ttattggaac cttaggatat atggctcctg
      241 aactatggaa gagaaaaaac attagtttcg atcaaaaaat tgatgtttat gcatatggtg
      301 tcctcgtttt agatttattc ggcatagaaa aaccagatga attatacgaa catcccccgg
      361 ccgcgataac caatatacct gaattaggaa agatacttcc aaaggactta gccagaactt
      421 tcattagttg cttaagccat gacaaatatg ctcgaccggc aatgtcttcg gttagagatc
      481 aaatagctaa atacctatta aaagatagac accgtgccct cttcgtcctg aatggaaaga
      541 aatatgaaat aaatgctaaa aataaaagtg ttacgatcac ttggggtact agtggaagta
      601 tggaaatagt atatgatggt ttcgacttta aagtaggtaa tttttcagga agtgcgacaa
      661 ttaataacca acaagtgata acaaataaag tatttcctag ctgcagtgta attactctta
      721 taaatgaaaa atctagaagc tttgtcacct ttgatatatc tagaccggag gtaatatcat
      781 gattgaagtc ggaagaatca ttgcagaacg ctataagatt ttatcttatg ttggtaaagg
      841 tgggatgcaa gacgtatata aagttttaga tctaaagctg gatttagatt tagctttaaa
      901 gactccactt cctggtttgg aaagcaaaag atttcttaaa agtgccaaaa tcgctgcaaa
      961 aata
//
LOCUS       DAJVSD010000426          953 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.429, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000426 DAJVSD010000000
VERSION     DAJVSD010000426.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 953)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 953)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.429"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            257..>953
                     /locus_tag="OQP62_004471"
     CDS             257..>953
                     /locus_tag="OQP62_004471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HCS1723827.1"
                     /translation="MFKKVLGLRHWNNNVVKIPPPAESGANASDVVVDTPEPYERILC
                     QKILMGISTIDIIRNAIIKSCEQLNIEKERINELNEQNDKARSSLKSLVEFITEIGTT
                     SSDIGCRMGDLNTSLTQINACIKEIQKIANQTNLIAINSAIEAARVGDAGRGFSVISK
                     EVKNLSEDVKHSSKSVSTLTSVIKDNTARVSEVLDNQQPVIDNITTNINQIVESIGIV
                     IDKSLSMKSVMQYI"
BASE COUNT          299 a          164 c          210 g          280 t
ORIGIN      
        1 attattattc aactattatt gtcagccttg tgaatgatat tttcgtataa agtgaagcga
       61 cttccattat gactattaat ggtattattg aatagtttac tctgtaatta tttaagttta
      121 gtggacattt tgtcttattc tggtgaacgt atggttatgg cagatgacag ccgatttttc
      181 attatgttag catgagttga taatacttta tccaggcata gatcaggatg tccacatata
      241 ataaggagaa tggtatatgt ttaaaaaagt attaggcttg cgccactgga ataataatgt
      301 tgtaaaaata ccgccgccag cagaatctgg cgctaatgcg tctgacgtgg tggtggatac
      361 tcctgagcct tatgagcgga tactgtgtca aaaaattctg atggggatct cgacgatcga
      421 tatcattcgt aatgccatca ttaagtcctg tgagcagctc aatattgaaa aagaacgcat
      481 taatgaactt aacgaacaga atgataaagc cagaagttca ttaaaatcgc tcgtggaatt
      541 tatcaccgaa attggcacga cttcatcaga tattggctgt cgtatgggcg acttaaatac
      601 ctccttaacg caaattaatg cgtgtattaa agagatacag aagatcgcta accagaccaa
      661 tttgatagcg attaactccg cgatcgaggc cgcgcgcgta ggggatgccg ggcgtggttt
      721 tagcgttatt tcgaaagaag tgaaaaacct gtccgaagat gttaaacaca gttcgaaaag
      781 cgtcagtacg ttaacctctg taatcaaaga taatacggcc agagtgagtg aggtgctgga
      841 taaccaacag ccggttattg ataatattac gactaacata aatcaaattg tggagtctat
      901 tggcatcgtc attgataaat cgctgagcat gaaatcggtc atgcagtaca tct
//
LOCUS       DAJVSD010000427          946 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.430, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000427 DAJVSD010000000
VERSION     DAJVSD010000427.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..946
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.430"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            205..>946
                     /locus_tag="OQP62_004472"
     CDS             205..>946
                     /locus_tag="OQP62_004472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1723828.1"
                     /translation="MMDSQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSA
                     GPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGGFAGFASGWNYWVL
                     YVLVAMAELTAVGKYIQFWYPEIPTWASAAAFFVIINAINLTNVKVFGEMEFWFAIIK
                     VIAVIAMILFGAWLLFSDTAGPQATVRNLWEQGGFLPHGWTGLVMMMAIIMFSFGGLE
                     LVGITAAEADNPEQSIPKATNQVIYRILI"
BASE COUNT          220 a          237 c          254 g          235 t
ORIGIN      
        1 tcgtcatcac ccctgcacaa agcaggtgca ttcgcggcca cataccatta ttctgatcaa
       61 gacgaaagag ttgaagtgac attttaaaaa acgagcttgt aaataaatca atacaaaaag
      121 cggaattgca aacttacaca cgcactactg catcgttcaa aataagcgcg ttatgaataa
      181 accgcgcccg atacacgagg ttttatgatg gacagtcagc agcacggcga gcagctcaag
      241 cgcggcctga aaaaccgcca tattcagctt atcgcattgg gcggcgcgat agggacaggc
      301 ttgttcctgg gaagcgcctc cgttattcag tcggcggggc caggaattat cctgggctat
      361 gcgattgcag gctttattgc ctttctgatt atgcgccagc tgggagagat ggtggttgaa
      421 gaaccggtcg ccggctcttt tagccacttc gcctataaat actggggcgg ctttgccgga
      481 ttcgcttccg gctggaacta ctgggtgctg tacgtattag ttgccatggc ggaactgacc
      541 gcagtgggta aatatatcca gttctggtat ccggagatcc ccacctgggc ttctgcggca
      601 gccttctttg tgattatcaa cgccatcaac ctgaccaacg ttaaagtgtt cggtgagatg
      661 gagttttggt tcgccattat taaagtgatc gccgtcatcg ctatgattct gttcggcgcg
      721 tggttactct tcagcgatac cgctggtccg caggccaccg tgcgcaacct gtgggaacag
      781 ggcggctttc tgccgcatgg ctggaccggg ctggtgatga tgatggccat tattatgttt
      841 tcgttcggcg gactggagct ggtagggatc accgccgctg aagccgataa cccggaacag
      901 agcatcccca aagctaccaa tcaggttatc tatcgcatcc tgattt
//
LOCUS       DAJVSD010000428          924 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.431, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000428 DAJVSD010000000
VERSION     DAJVSD010000428.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 924)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 924)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.431"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..865
                     /locus_tag="OQP62_004473"
     CDS             <1..865
                     /locus_tag="OQP62_004473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1723829.1"
                     /translation="GTTWLAMRIAVETIPPVFATGMRFMFAAPFLIIIAWLRKKNLLF
                     PPGQRLFQFVICIFYFSIPFSLMIYGETYVNSGLAAIIFANMPVAVLIASVLFLNEKA
                     KLMQIAGLTIAITALTGILLEETNTSTESHWQGITALISAVLIHAIIYTQCKKRSCTV
                     SVITFNALPCLLAGLILSATGWFFERPQVSTFSVHSILATLYLGAFAGVFGILCYFAL
                     QQKANAFQASLVFLIFPLIAVSLEDYIYGYAISTHSMLLIIPLAIGIFLTLVARNIPV
                     TSRCRDNSSQK"
BASE COUNT          237 a          196 c          184 g          307 t
ORIGIN      
        1 ggggactaca tggttggcta tgcgaattgc cgttgaaact atccctccag tgtttgcaac
       61 cggaatgagg tttatgtttg cagcaccttt tttaatcatc attgcatggt taagaaaaaa
      121 aaacctgttg tttcctcccg gacaacgatt attccagttt gtgatttgca tcttttattt
      181 ttctattcct ttctcactaa tgatttatgg tgaaacctat gtcaactctg ggcttgccgc
      241 cattatcttt gcgaatatgc ctgtggccgt tttgatagca tcggttttgt ttctaaatga
      301 aaaagcgaaa ctaatgcaga tcgcgggctt aactatcgca atcactgcat tgacggggat
      361 acttcttgaa gaaacgaata caagtacaga gagtcactgg cagggtatca ctgcgcttat
      421 ttctgctgtg ttaatccatg ccataatata tacacaatgt aagaaaagaa gttgtactgt
      481 ctctgttatc acatttaatg cgctcccgtg ccttttagct gggttgatac tttctgcgac
      541 aggatggttt tttgaaagac cacaagtatc aaccttctca gtacactcaa tattagctac
      601 cctgtatctc ggggcttttg ccggagtttt tggtatcctg tgctactttg cgcttcagca
      661 aaaggctaac gccttccagg cttcgcttgt atttcttatc tttccgctga ttgcggtaag
      721 tctggaagac tatatttatg gatatgctat ttcaacacac tcaatgctgc ttattatacc
      781 attagctatc gggatatttc ttactcttgt cgccagaaat atccctgtaa ccagcagatg
      841 tcgggataat tcatcacaga aataatcgat ttataataac gcaaataatt cctgatgcct
      901 tactgagctc cagctaatgc gggg
//
LOCUS       DAJVSD010000429          924 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.432, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000429 DAJVSD010000000
VERSION     DAJVSD010000429.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 924)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 924)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.432"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..917
                     /gene="waaB"
                     /locus_tag="OQP62_004474"
                     /gene_synonym="rfaB"
     CDS             <1..917
                     /gene="waaB"
                     /locus_tag="OQP62_004474"
                     /gene_synonym="rfaB"
                     /EC_number="2.4.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipopolysaccharide 1,6-galactosyltransferase"
                     /protein_id="HCS1723830.1"
                     /translation="KYAQSFSNIKLSFLRRSKHVYNFSQWLKETSPDIVICIDVISCL
                     YANKARKKSGKQFTIFSWPHFSLDHKKHAECITYADYHLAISSGIKEQMMARGISEQD
                     ISVVYNPVSIKTIIVPPPERDKPAVFLYVGRLKFEGQKRVKDLFDGLARTTGEWQLHI
                     IGDGSDFEKCQAYSRELGIEQRVIWYGWQSAPWQVVQQKIKNVTALLLTSAFEGFPMT
                     LLEAMSYGIPCISSDCMSGPRDMIKPGLNGELYTPGAIDDFVGHLNRVISGEVKYQHD
                     IIPGTIERFYDVLYFKNFNNAIFSKLQK"
BASE COUNT          269 a          164 c          206 g          285 t
ORIGIN      
        1 ttaaatatgc gcaatcattc tcaaatataa aattaagttt tcttcgtcga tctaagcatg
       61 tttataattt tagtcagtgg ctgaaagaaa cgtcaccgga tattgtgata tgtattgatg
      121 tcatctcatg cctttatgcc aataaagcac gtaagaaaag tggtaaacag tttactattt
      181 tctcgtggcc gcatttttcg ctcgaccata aaaaacatgc agaatgtata acgtacgcgg
      241 attatcatct ggccatcagt agtggtatta aagaacagat gatggcacgg gggatctcag
      301 agcaagatat tagcgtcgtt tacaatcctg tctctattaa aacaatcatt gtgccgccgc
      361 ctgagcgcga taaacccgct gtatttctct atgtagggcg tcttaaattt gaagggcaga
      421 aaagagttaa agatttattt gatggcttag ctcgtacgac aggggaatgg cagctacata
      481 ttattggtga tggctcagat tttgaaaagt gccaggccta tagccgggag cttggtattg
      541 agcagcgtgt gatctggtat ggttggcaaa gcgcgccgtg gcaagtcgta cagcaaaaaa
      601 taaaaaatgt taccgcgtta ctacttacct ctgcatttga gggatttcct atgactctgc
      661 tggaagcaat gtcatatgga attccatgta ttagttctga ttgtatgtct ggtccgcgcg
      721 atatgattaa acccggtttg aatggtgagc tttacactcc gggtgctata gatgattttg
      781 taggacacct taatcgagtc atttccggtg aagtaaaata tcagcatgat attattcccg
      841 gcacgattga gcgattttac gatgtgctat attttaaaaa ttttaataat gcgatattct
      901 cgaaattaca aaagtgatca ctat
//
LOCUS       DAJVSD010000430          922 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.433, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000430 DAJVSD010000000
VERSION     DAJVSD010000430.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 922)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 922)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..922
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.433"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(28..837)
                     /gene="cdtB"
                     /locus_tag="OQP62_004475"
     CDS             complement(28..837)
                     /gene="cdtB"
                     /locus_tag="OQP62_004475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin S-CDT"
                     /protein_id="HCS1723831.1"
                     /translation="MKKPVFFLLTMIICSYISFACANISDYKVMTWNLQGSSASTESK
                     WNVNVRQLLSGTAGVDILMVQEAGAVPTSAVPTGRHIQPFGVGIPIDEYTWNLGTTSR
                     QDIRYIYHSAIDVGARRVNLAIVSRQRADNVYVLRPTTVASRPVIGIGLGNDVFLTAH
                     ALASGGPDAAAIVRVTINFFRQPQMRHLSWFLAGDFNRSPDRLENDLMTEHLERVVAV
                     LAPTEPTQIGGGILDYGVIVDRAPYSQRVEALRNPQLASDHYPVAFLARSC"
BASE COUNT          267 a          210 c          199 g          246 t
ORIGIN      
        1 gtacatgtcg taaactctat ttactcatta acagcttcgt gccaaaaagg ctacgggata
       61 atgatcagaa gcgagttgtg gattacgtaa tgcttcaacc ctttgtgaat aaggtgctcg
      121 atcgacaatg accccataat ctaaaatacc accgccaatt tgcgtgggtt ctgtaggtgc
      181 gagtacggct acaactcgtt ccagatgctc agtcatcagg tcattttcaa gtctgtctgg
      241 gctgcgatta aaatccccgg caagaaacca ggataaatgc cgcatctgag gttgtctaaa
      301 aaaattaatg gtaaccctga caatagctgc agcatccgga cctccactag ccagtgcgtg
      361 cgctgtcaga aaaacatcat tacccagtcc gatgccaatg acggggcgag atgcgacagt
      421 tgtcggacgc aagacataaa cattatccgc tctttgtctg gaaactattg ccagattaac
      481 acggcgtgct ccaacatcaa tagccgagtg gtagatatat cttatatcct gacggctggt
      541 ggttccgaga ttccaggtgt attcatcaat gggaataccc actccaaaag gctgaatatg
      601 tcgtccggta ggaaccgctg aggtgggaac agcaccggcc tcctgtacca taagaatatc
      661 cacaccggca gtaccactta aaagctgtct gacattgaca ttccatttac tttctgtaga
      721 tgctgaagag ccctgaagat tccaggtcat aactttgtag tcactgatat tagcgcaggc
      781 aaaagaaata tagctgcaga tgatcatggt cagaaggaaa aaaacaggtt ttttcataat
      841 atctactctc ccgagcatta cttctttatc tgaatgatat atgtgttaat aacccattgt
      901 ttcatgacgt tgattttatt ct
//
LOCUS       DAJVSD010000431          907 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.434, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000431 DAJVSD010000000
VERSION     DAJVSD010000431.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..907
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.434"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            177..320
                     /gene="mgrB"
                     /locus_tag="OQP62_004476"
     CDS             177..320
                     /gene="mgrB"
                     /locus_tag="OQP62_004476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoP/PhoQ regulator MgrB"
                     /protein_id="HCS1723832.1"
                     /translation="MKKFRWVVLGIVVVVCLLLWAQVFNIMCDQDVQFFSGICAINKF
                     IPW"
     gene            391..678
                     /locus_tag="OQP62_004477"
     CDS             391..678
                     /locus_tag="OQP62_004477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebO family protein"
                     /protein_id="HCS1723833.1"
                     /translation="MNDVLNSGAFSLASLIVSMVVLVVGLALWFFVNRASSRANEQIE
                     LLEALLDQQKRQNALLRRLCEANEPEKEAEPATAASEPKEDEDIIRLVAER"
BASE COUNT          244 a          186 c          213 g          264 t
ORIGIN      
        1 aattgcgcga atgatcaaac gcattactac ctctttttta gttagaataa gagtagcgtg
       61 tacattgatt gaaacaagtg aatcattcct aaaaacatat aatgccgcta cagttactcc
      121 tggtttaagt aacttatgat aatttagcga cataagatgt aagatcggag agtggagtga
      181 aaaaatttcg atgggtcgtt ctcggcatcg tggtggtagt atgcctgttg ctgtgggcgc
      241 aggtgtttaa tatcatgtgc gatcaggatg tacaattttt cagcggtatt tgcgccatca
      301 ataaatttat tccctggtaa acgttttaca ccagagattt ccttcccgtg tagcagtggt
      361 agaatgacgt ctctacattg aggtggtgaa atgaacgacg ttttaaactc tggtgcgttt
      421 tctcttgcat ctttaatagt atcaatggtg gttctggtgg tggggctggc gctctggttc
      481 tttgtcaacc gggcaagttc ccgtgccaac gagcagatag aactgctcga agcgttgttg
      541 gatcaacaga agcggcaaaa cgcgttgtta cgccgccttt gcgaagcaaa cgaaccagaa
      601 aaagaagcgg aacccgcaac agcggcaagc gaaccgaaag aggatgagga catcattcgt
      661 ctggttgctg aacgataatg cttaccgggg cgcaaatggc gccagtgcca tacgccccat
      721 ttccccgtcg gatctctccg cgttgccgtt tgcaactgat actacagcat caacacctta
      781 cctaatatat ggctttatat gcaacatagt tttatatgta taacaaatgg acatatggca
      841 tttttgtgat accgctcatt ctctattaaa agcgaaacgt ttctctctct ttatggattg
      901 tcattgt
//
LOCUS       DAJVSD010000432          899 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.435, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000432 DAJVSD010000000
VERSION     DAJVSD010000432.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 899)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 899)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..899
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.435"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            14..859
                     /locus_tag="OQP62_004478"
     CDS             14..859
                     /locus_tag="OQP62_004478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723834.1"
                     /translation="MYFKKSLLALAICASVVSVEAVANIRANDMASSATPASVGHRPV
                     ATTNAKKIEVSGELTTGSTLQIADVFIEDEDGDPLSLDKMNNADDIKWYLVDNEAADP
                     SGTPAATGTAFTIPAYAGGKKIKIVYRIKTATGTPDSAFLPATVLLTSASSGVSGDSA
                     ADGTISNKLRSVTINVVNESGKPTDELNGTNDANTPVVGGTLEVVLECAATAAAECEV
                     SNYNFTWQMADAGTPDRFTDLNNTNAEKHKYIIKGTEQNKLFRVHVTPKTTKATPENK
                     RAIRR"
BASE COUNT          245 a          201 c          225 g          228 t
ORIGIN      
        1 gggatgaatt gttttgtact tcaaaaaatc tttattagct ttagcgattt gtgcatccgt
       61 ggtctcagta gaggcggtgg cgaatatcag agccaatgat atggcttctt ctgctacgcc
      121 tgcttctgtt ggtcaccgtc ctgtggcaac tactaatgca aaaaagatag aagtgtctgg
      181 ggaactgacg accggttcaa ccctccagat agcggatgtt tttattgagg atgaggatgg
      241 ggatccctta tcgctggata aaatgaataa tgccgacgat attaaatggt atctggtgga
      301 taatgaggcc gccgatcctt ctggaacccc ggcggcaacc gggacggctt ttaccattcc
      361 tgcttatgca ggcggtaaaa aaattaaaat cgtttaccgg attaagacgg caacggggac
      421 gccggatagt gcattcttgc ctgccactgt cttattaact tctgcatctt ctggggtgag
      481 cggcgactcc gccgcagacg gtacaatttc taataagcta cgttctgtca ctatcaatgt
      541 ggtgaatgaa agtggtaaac cgactgatga actcaacggt accaatgacg ccaacactcc
      601 agtggtaggc ggcacccttg aagtggtact ggaatgtgcc gccacagcgg cggctgagtg
      661 tgaggtcagt aattataact ttacctggca gatggcggat gccgggacac cagataggtt
      721 caccgatctg aataatacca acgctgaaaa gcataaatat attattaagg gaactgagca
      781 gaataaactg ttccgtgtcc acgttacgcc taaaacgacg aaagccacgc cggagaataa
      841 acgcgctatc cgtcgctgat ggttatcgcc aaataaacat cttatttaaa tactccctc
//
LOCUS       DAJVSD010000433          896 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.436, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000433 DAJVSD010000000
VERSION     DAJVSD010000433.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 896)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 896)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.436"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(1..298)
                     /locus_tag="OQP62_004479"
                     /pseudo
     CDS             complement(1..298)
                     /locus_tag="OQP62_004479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702801.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pertussis toxin-like subunit ArtA"
     gene            complement(611..880)
                     /locus_tag="OQP62_004480"
     CDS             complement(611..880)
                     /locus_tag="OQP62_004480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001766201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein NinG"
                     /protein_id="HCS1723835.1"
                     /translation="MAKLPRRKCKVCREWFPPAYSNVVWCCPEHGAIYALELRAKEKS
                     KAAARCIRGKHQADKAERQANGCMLRERQAVLYTLSRKMFRKHLR"
BASE COUNT          252 a          237 c          170 g          237 t
ORIGIN      
        1 ccacataact caatataagc aacagacggc ggaaggctgt agaaactatt gtctgcacgg
       61 attctgtatc tgtacaacct gccgctaaat gttgctctgg agtaatataa tcgtgctata
      121 ttataagcct cattaatatc tgagatagtc gcaatatagt actgtctcga ctaccggata
      181 cacaggagtc atctcttata tgttgctgaa gattcctgtt atttccgtga gaagcaaaac
      241 catcccgaaa aatcacatct gaaggtctcg agtcaacacg atatacaaaa tcaacggcac
      301 ctgaatgacc aaaaaaatac taaaaataat attacttttt tatcatactc tctcctacag
      361 aaactatcag gcaaaccacc taatgtgtta aaccgagtgc taaccatagc tcagtcatac
      421 tttacgtctc gctggataaa attagaaaaa caaacctccc cggtttacgg gcacgaaaat
      481 cccggtaatt gcgcaatgcc gatccttaaa ctgcggcact ataacggctt cccctacagg
      541 gagccgtttt gttatgtcac ttctcaatga cctgctcgat ttcagcgacc atccccttat
      601 gccaccgcct tcagcgcaga tgtttgcgga acatcttcct gctgagtgta tacaacactg
      661 cctgacgctc tctaagcatg caaccgttcg cctggcgttc ggctttatcc gcctggtgtt
      721 tacctctgat acacctggct gcggctttac tcttttcttt ggcacgcagt tccagcgcgt
      781 agatagcacc atgttcagga cagcaccaga caacgttgct gtaagcagga ggaaaccatt
      841 cccgacaaac tttgcattta cggcgcggta atttagccat gctcacctca gacccg
//
LOCUS       DAJVSD010000434          891 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.437, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000434 DAJVSD010000000
VERSION     DAJVSD010000434.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 891)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 891)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..891
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.437"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            2..841
                     /locus_tag="OQP62_004481"
     CDS             2..841
                     /locus_tag="OQP62_004481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001752601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1723836.1"
                     /translation="MAFVEAVSCGSFSAAARRLRKSQSTISTAIAHLEADLGFSLFDR
                     SSRQPVLTEEGKRVLSYVQAILSASDRLDEVALTLSGETETRLTFVLSDTLHPDSLEE
                     LMAQFDRQFPHTEFECLIGENDDVIDLLQKGRAQIGLIEARDNYPTDIGATRLLVQSW
                     MGVYVATTHPLASQTNLQWEQLHTWRELRLNTYLDSNANITRGPAWSAPNYLLLLSMA
                     VQGFGWCVLPCALVEEFAAEKPLAQLDVPGWPRAIAIDLLWNKKTPPGTAGNWLRYHL
                     QQK"
BASE COUNT          189 a          228 c          260 g          214 t
ORIGIN      
        1 aatggcattt gttgaggccg tctcttgcgg ctcgttttct gcggcggcgc gccgcctgcg
       61 taaaagccag tccaccatta gtaccgccat tgcgcatctg gaggcggatc tgggattttc
      121 attatttgat cgatcatcgc gccagcccgt tctgaccgaa gaaggaaaac gggtgcttag
      181 ctatgttcag gctattttat cggcgagcga ccgtctggat gaggtggcgc tgacgttatc
      241 cggcgagacg gagacaaggc tcacgttcgt cctctctgat accctgcacc ctgacagtct
      301 ggaagagtta atggcgcagt ttgatcgtca attcccgcat accgagtttg aatgtttgat
      361 cggagaaaat gatgatgtca tcgacctgct gcaaaaaggg cgcgcccaga taggcctgat
      421 tgaagcgcgt gataactatc ccacagacat tggcgcgacg cgtctgcttg ttcaaagctg
      481 gatgggggtt tatgtggcga ccacgcatcc gttggcgtcg cagacgaacc tgcaatggga
      541 gcaactgcat acctggcgcg agctgcgtct gaatacctac cttgactcta acgccaacat
      601 tacgcgcggc ccggcctggt cagcgccaaa ctatttattg ctgttgagca tggcggttca
      661 gggatttggc tggtgcgtat tgccctgcgc gctggtggaa gagtttgcgg cggaaaaacc
      721 gctggcgcag ctggatgttc ctggctggcc gagggcgatt gctattgatt tgttgtggaa
      781 caagaagacg ccgcccggaa cggcggggaa ctggcttcgc taccatttac agcagaaata
      841 agctgcgcca ccgtcaaatc agcgtcattt cctttgtgat aaaactcact t
//
LOCUS       DAJVSD010000435          881 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.438, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000435 DAJVSD010000000
VERSION     DAJVSD010000435.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.438"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..>881
                     /locus_tag="OQP62_004482"
     CDS             <1..>881
                     /locus_tag="OQP62_004482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016505863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
                     /protein_id="HCS1723837.1"
                     /translation="TLFVLTSVFHSGNVFSRQYNFDYGSLSLPPGENASFLSVETLPG
                     NYVVDVYLNNQLKETTELYFKSMTQTLEPCLTKEKLIKYGIAIQELHGLQFDNEQCVL
                     LEHSPLKYTYNAANQSLLLNAPSKILSPIDSEIADENIWDDGINAFLLNYRANYLHSK
                     VGGEDSYFGQIQLGFNFGPWRLRNLSSWQNLSSEKKFESAYIYAERGLKKIKSKLTVG
                     DKYTSADLFDSVPFRGFSLNKDESMIPFSQRTYYPTIRGIAKTNATVEVRQNGYLIYS
                     TSVPPGQFEIGREQIAD"
BASE COUNT          291 a          148 c          161 g          281 t
ORIGIN      
        1 ttactctatt tgttttaacc agtgtatttc actctggaaa tgttttctcc agacaatata
       61 atttcgacta tggaagtttg agtcttcctc ccggtgagaa tgcatctttt ctaagtgttg
      121 aaacgcttcc tggtaattat gttgttgatg tatatttgaa taatcagtta aaagaaacta
      181 ctgagttgta tttcaaatca atgactcaga ctctagaacc atgcttaaca aaagaaaaac
      241 ttataaagta tgggatcgcc atccaggagc ttcatgggtt gcagtttgat aatgaacaat
      301 gcgttctctt agagcattct cctcttaaat atacttataa cgcggctaac caaagtttgc
      361 ttttaaatgc accatctaaa attctatctc caatagacag tgaaattgct gatgaaaata
      421 tctgggatga tggcattaac gcttttcttt taaattacag agctaattat ttgcattcta
      481 aggttggagg agaagattca tactttggtc aaattcaact tggttttaat tttggtccct
      541 ggcggctaag gaatctatca tcttggcaaa acttgtcaag cgaaaaaaaa tttgaatcag
      601 catatattta tgctgagcga ggtttaaaaa aaataaagag caaactaaca gttggggaca
      661 aatataccag tgcagattta ttcgatagcg taccatttag aggcttttct ttaaataaag
      721 atgaaagtat gatacctttc tcacagagaa catattatcc aacaatacgt ggtattgcga
      781 aaaccaatgc gactgtagaa gtaagacaaa atggatactt gatatattct acttcagtcc
      841 cccccgggca attcgagata ggtagagaac aaattgctga t
//
LOCUS       DAJVSD010000436          866 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.439, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000436 DAJVSD010000000
VERSION     DAJVSD010000436.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..866
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.439"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            298..>866
                     /locus_tag="OQP62_004483"
     CDS             298..>866
                     /locus_tag="OQP62_004483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020239317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HCS1723838.1"
                     /translation="MNKLSPEMPELQSMNITADNITKLKSLFPEAFNENGIDFDVLKQ
                     LLGENVDEKEERYGLNWHGKRQARQLALTPSRGTLRPCKDESVDWDNTKNLMIEGDNL
                     EVLKLLQKSYTGKVKLIYIDPPYNTGKDFVYPDNFQDNMKNYLEITGQTEEGVRVSTN
                     AETSGRYHTDWLNMMYPRIKLARNLLSDSG"
BASE COUNT          287 a          174 c          163 g          242 t
ORIGIN      
        1 ttgcctgacc attatcctct gcaatatcac aaattatttg catgagttgt tctgcaggca
       61 tttccttgag taaagaaagt tgtttcttgt tcagtttagc catcatcaca tcctgataat
      121 gtttggtaga cgcagaaaag ctaattgtac taacacgagg acagaacatt caataaaagc
      181 attaacataa tgatttaaaa agaaatctgt agcacgctgt tcattgatga aatgcactct
      241 ttaccgtaaa atatccccca tcacacagta acctgataca gatacgtgga atggtcaatg
      301 aacaaacttt cgcctgaaat gcccgaactg caatcaatga atatcactgc tgataacatc
      361 accaagctta aatcattgtt tcctgaagcc tttaatgaaa acggcattga ttttgacgtt
      421 ttaaaacagc ttttgggtga aaatgtagac gaaaaagaag aacgctatgg cctgaactgg
      481 catggtaagc gtcaggctcg tcagcttgct cttacccctt cccgtggcac cttacgccca
      541 tgtaaagatg aaagcgttga ttgggataac accaagaacc tcatgatcga gggtgataac
      601 cttgaagtgt taaagcttct tcaaaaaagc tacactggaa aagttaagct tatatatatt
      661 gatcctcctt acaacaccgg gaaagatttt gtttatcctg ataacttcca agataatatg
      721 aaaaattatc ttgaaatcac agggcaaaca gaagaaggtg tccgggtaag tacaaatgca
      781 gaaaccagtg gtcgttatca taccgattgg ttgaatatga tgtacccccg tataaaatta
      841 gccagaaact tactttctga ctctgg
//
LOCUS       DAJVSD010000437          865 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.440, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000437 DAJVSD010000000
VERSION     DAJVSD010000437.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 865)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 865)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..865
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.440"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            151..813
                     /locus_tag="OQP62_004484"
     CDS             151..813
                     /locus_tag="OQP62_004484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001576082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HCS1723839.1"
                     /translation="MKHTQQSGAKVYNPFTLSLYDWWVLNISNKYAWKCPTDTRLLPF
                     FLHHMGETHLDIGVGTGYYLKHAPATHAISLMDLNPDSLKIAASRVGNTKIRATLQHD
                     VFDTFPADWHGRFDSVSMYYLLHCLPGEMTTKAKAIKNAGMALKPGGTLFGATILGKE
                     VPHNAFGKKLMAVYNKKGIFSNTNDSADTLRSVLDEHFAKVTLEQHGAVALFSATMPR
                     SL"
BASE COUNT          234 a          205 c          186 g          240 t
ORIGIN      
        1 ttattatcct ctatattctt taagatagcc gtttaattaa taatatcgcc tttattcatc
       61 gcattaaatt actcactcac ctgattaatg cttgcctaac gattacttcg ttgttttaat
      121 tccagcgcga aattatttaa tgagagaaca atgaagcata cacaacaatc aggcgcaaaa
      181 gtctataacc cattcacgct tagcttatat gactggtggg tactcaatat ctcaaacaaa
      241 tatgcctgga agtgtcctac tgatacgcga ctacttcctt tcttcctgca tcacatgggc
      301 gagactcacc tggatattgg cgtaggtaca ggttattacc tgaaacatgc acctgcgact
      361 catgccattt cgctgatgga tttaaatccg gatagcctga aaatagccgc cagccgagtg
      421 ggtaatacga aaatccgcgc cacactacaa cacgatgttt tcgacacgtt cccggcggac
      481 tggcacgggc gcttcgattc cgtttcgatg tactatcttc tgcactgctt acccggtgag
      541 atgacaacaa aagcgaaggc aattaaaaat gccggtatgg cgctaaaacc cggcggcaca
      601 ctttttggcg ccacgattct gggcaaagag gttcctcaca atgcttttgg taagaaatta
      661 atggctgttt ataacaagaa aggaatattc agtaatacca atgattcagc cgatacgtta
      721 cgcagcgtgt tggacgaaca tttcgctaag gtgactttgg agcaacatgg cgccgttgcg
      781 ctattttccg ccactatgcc acgttcattg taggtgtagg cacttccggg cggtcggcag
      841 cgcgatcatg tgggtttaac ccgtt
//
LOCUS       DAJVSD010000438          849 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.441, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000438 DAJVSD010000000
VERSION     DAJVSD010000438.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..849
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.441"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            99..>849
                     /locus_tag="OQP62_004485"
     CDS             99..>849
                     /locus_tag="OQP62_004485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016505598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723840.1"
                     /translation="MPDGLESTLEFDPSTSFINTTAVDNGITYSFTGEAVKATAHASC
                     TANQATNSAICVWDKSFSLPLTLLTKQNGITINQQNLTVSVIPGGGNNDTNQYSSLSG
                     HIIIDESVSSYTNYEPETSGIENLKLKWTVTVTEDTEGDVGIWNGSLVLNGSPASTLH
                     RYLLPEILDASFSENAIAHSTEVAMTGAKNNVELASVYLYHGNTPCDDTSLCNYSLNK
                     TSVSLVCHDLNAQLNFSNTCNASGTTHCLNGK"
BASE COUNT          260 a          197 c          161 g          231 t
ORIGIN      
        1 cctacattcg ataccatcca taccccatta ccaacaaaca ttcatatcct ttcatcgtgc
       61 actaagtcag gtggaggggg ggttgtattc caggtacatt gcctgatgga cttgaatcca
      121 ctcttgagtt tgatccatca acttctttca tcaatacaac cgctgtcgat aacggtatca
      181 cttatagttt tactggtgaa gcggtaaaag cgacggcaca tgccagctgt acggctaatc
      241 aggcaactaa cagcgcaatt tgtgtatggg ataaatcatt ttcacttccc ctcaccttac
      301 ttaccaaaca gaacggaata accattaacc agcaaaatct tacagtttcg gtaatacccg
      361 gaggaggaaa taatgatact aaccagtact catccctttc cggccatatt attattgatg
      421 aatcggtaag cagctacacg aattatgaac cggaaacatc gggcattgag aatttaaaat
      481 taaaatggac tgtaacagtg acagaagata ccgaaggtga tgtcggtata tggaacggat
      541 cacttgtact taatggctct ccagcgtcca ccctacatcg ttatttgctt ccagaaatat
      601 tagatgcttc attttctgaa aatgcgatag cgcacagtac cgaagtcgcc atgactggcg
      661 caaaaaataa tgtcgagcta gcctctgtat atctctacca tggcaatacg ccatgcgatg
      721 atacatcctt gtgtaactac agtcttaata agacatcagt ttctcttgta tgtcacgatc
      781 tgaatgcgca acttaacttt agcaacactt gtaatgcttc aggcacaaca cattgcctga
      841 acggaaaag
//
LOCUS       DAJVSD010000439          832 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.442, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000439 DAJVSD010000000
VERSION     DAJVSD010000439.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 832)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 832)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..832
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.442"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..564)
                     /locus_tag="OQP62_004486"
     CDS             complement(<1..564)
                     /locus_tag="OQP62_004486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001258703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cylase"
                     /protein_id="HCS1723841.1"
                     /translation="MRTFEAPGDPVTAEKRRAFCDAFEAINGTHGVNLTRHNYPALHG
                     TLQTVATQCTDNLDDALLLPAFDQAVSINRAQDDHSHGLGTLELKFRYYVDLNKHYVY
                     FYDLINSRRFAMHRWTFLQKGTMGINRKDIDKLFTGRTVISSIYMDDITQENVMSFLT
                     PVYLSGSLKGIVMVDVNQDNLKNIFYTQ"
     gene            complement(583..756)
                     /locus_tag="OQP62_004487"
     CDS             complement(583..756)
                     /locus_tag="OQP62_004487"
                     /inference="COORDINATES: protein motif:HMM:NF028464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723842.1"
                     /translation="MNLHHKALRHFISASVIVLTSSFLIYELIASDRAMNAYMRYIME
                     RADSSFLYDKYQN"
BASE COUNT          233 a          179 c          191 g          229 t
ORIGIN      
        1 ctgggtataa aaaatatttt ttaaattatc ctggttaaca tccaccatca cgatgccttt
       61 taacgatccc gacagataga ctggcgttaa aaagctcatg acgttttcct gggtaatatc
      121 atccatgtag atacttgaaa taaccgtacg gccggtaaaa agtttatcta tatcttttct
      181 gttaataccc attgtgcctt tttgtaaaaa agtccaacga tgcatggcga agcgccgtga
      241 gttgattaaa tcatagaaat agacataatg tttatttaaa tcaacgtaat aacggaattt
      301 aagctccagt gtgcccagcc cgtgactgtg gtcgtcctgc gctcggttga tgcttaccgc
      361 ctgatcaaat gcaggcagta aaagggcgtc atcaagatta tcggtacact gtgtagcgac
      421 ggtttgcagg gtgccatgta gcgccggata attatgccgg gtcaggttga cgccgtgcgt
      481 accgttaatg gcctcaaagg cgtcgcaaaa cgcgcggcgt ttttctgcgg tgacggggtc
      541 tcccggcgct tcaaaagttc gcatcaaatg tgcggcgatg ctttaattct ggtacttatc
      601 gtacaaaaac gacgaatcgg ctctctccat gatataacgc atataggcat tcattgccct
      661 gtcgctggca ataagttcgt aaatcaggaa ggacgatgtc aaaacgatga cgcttgccga
      721 gataaagtgc ctgagcgctt tatgatgcaa attcatgatg aactacagcc ctgaaagtcg
      781 gatgcgttag tttaccatag cgatgagaat tcctctaaca aactgtttaa aa
//
LOCUS       DAJVSD010000440          829 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.443, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000440 DAJVSD010000000
VERSION     DAJVSD010000440.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 829)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.443"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(14..>829)
                     /gene="rfbK"
                     /locus_tag="OQP62_004488"
     CDS             complement(14..>829)
                     /gene="rfbK"
                     /locus_tag="OQP62_004488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001103634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen biosynthesis phosphomannomutase RfbK"
                     /protein_id="HCS1723843.1"
                     /translation="LGRSDNFVPIDTEAVSKEDREKARSWAKEFDLDAIFSTDGDGDR
                     PLIADEAGQWLRGDILGLLCSLALGAEAVAIPVSCNSIISSGRFFKHVKLTKIGSPYV
                     IEAFNELSRSYSRIVGFEANGGFLLGSDICINEQNLHALPTRDAVLPAIMLLYKSRNI
                     SISALVNELPTRYTHSDRLQGITTDKSQSLISMGRENLSNLLSYIGLENEGAISTDMT
                     DGMRITLRDGCIVHLRASGNAPELRCYAEANLLNRAQDLVNITLANIKKRCLP"
BASE COUNT          257 a          187 c          141 g          244 t
ORIGIN      
        1 acattcaatt cttttacggc aagcatcgtt ttttaatatt agcaagcgtt atatttacaa
       61 gatcctgagc tctatttaat aaattagctt ctgcatagca gcgtaactca ggtgcattac
      121 cagaggcgcg caaatgcaca atacatccat cacgtaaggt aattcgcata ccatctgtca
      181 tatctgtaga aattgcacct tcattctcca aaccaatata gcttaagagg ttgctcagat
      241 tttctctgcc catactaatt aaggattgac ttttatcagt cgtaattccc tgtaatctgt
      301 cagaatgggt gtaacgagtt gggagttcat tgactaaagc gctaatgctg atattcctac
      361 ttttgtaaag tagcattatt gctggtaata cagcatcacg agttggtaag gcatgaagat
      421 tctgctcgtt aatacagata tcgcttccta ataaaaaacc gccattggct tcaaaaccga
      481 caatacgact ataactccga gataattcat taaaagcttc gataacataa ggcgagccaa
      541 ttttcgtaag tttaacatgt ttaaaaaagc ggccagaaga aattatgcta ttacaactaa
      601 caggaatagc gaccgcttct gcccccaatg caagtgaaca taatagacct aatatatcgc
      661 ctcttaacca ctgaccggcc tcatcagcaa taagaggacg atcaccatcc ccatctgttg
      721 agaatatggc atctaaatcg aactctttag cccatgagcg tgctttttcc cgatcctctt
      781 tgcttacagc ctctgtatct ataggtacaa agttatcgct tctacccaa
//
LOCUS       DAJVSD010000441          819 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.444, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000441 DAJVSD010000000
VERSION     DAJVSD010000441.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.444"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            202..>819
                     /locus_tag="OQP62_004489"
     CDS             202..>819
                     /locus_tag="OQP62_004489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1723844.1"
                     /translation="MMMKRAIIVSVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFK
                     EKCGVSIGKYIRQRKLSRSATLLKLTSQSVTDIAFRMGFDSVQSYSREFKKTFGVNPN
                     NYRKADFWDLRNLRPPYWLDCDGHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPI
                     KWKIIHETLRTWGENVYCLSSFKPDNTKDQVIAVSSFFGMEHNSVD"
BASE COUNT          260 a          161 c          167 g          231 t
ORIGIN      
        1 ctgtgaaatt atgcccttcg ccatgccaat tacttagctt tactggcaaa agccgatctc
       61 caagtgtaaa gtttattcag aaacgtcaag caatttaaat ctttcttgtt ttgccagaaa
      121 agctaacaac cccccactgg tttaataaca ccgtatgtca aacaccttaa atgtttatat
      181 tttcggcttc aataaagagg aatgatgatg aaaagagcca taatagtctc agtattagag
      241 caaatagaaa aaaatcttga agagaggatt gatattgaaa agttggttgt tataacaggt
      301 tattcgcgaa ggagtttgca ggattttttt aaagaaaagt gtggcgtctc tatcggaaaa
      361 tatatcagac aacgcaagtt gagcagaagc gccactctgc taaagctgac ctctcagtcg
      421 gtcacagata tcgcgttcag aatggggttt gattcagtgc agtcctatag tcgagagttc
      481 aaaaaaacat ttggcgtcaa tcccaataac tatcgcaagg ctgatttctg ggatctcaga
      541 aacctacggc ctccctactg gcttgactgt gatgggcatt atcagttcga aatttgtcag
      601 cttacgtcaa aagaaatttt cggatttcaa acatctcatc agatcgcaac aaatgacctt
      661 cctaaaaaag cgtcgcctat aaaatggaaa atcattcatg agacgctcag gacgtggggc
      721 gaaaatgtgt attgtctctc gtcttttaag ccggataata ccaaagacca ggtcatcgcc
      781 gtaagcagtt tttttggtat ggaacataat tccgtcgat
//
LOCUS       DAJVSD010000442          804 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.445, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000442 DAJVSD010000000
VERSION     DAJVSD010000442.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 804)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 804)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.445"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            1..543
                     /locus_tag="OQP62_004490"
                     /pseudo
     CDS             1..543
                     /locus_tag="OQP62_004490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461634.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
     gene            547..804
                     /locus_tag="OQP62_004491"
                     /pseudo
     CDS             547..804
                     /locus_tag="OQP62_004491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461634.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
BASE COUNT          210 a          212 c          232 g          150 t
ORIGIN      
        1 caggtgatcc ctgaaaacga gggcggttgg tggatacgtg aagtgggcct gtttgatgag
       61 tccggggcat tgattgccgt gggaaactgc ccggaaagct ataagccgca actggctgaa
      121 ggcagcgggc gtacccagac cgtgcgcatg gtgctgatta ccagcagcac ggacaatatc
      181 accctgaaaa tcgaccctgc cgtagtgctg gcaacccgca agtatgtgga tgataaggta
      241 ctggagctga aggtgtacgt ggatgacctg atggcaaaac atcttgccgc accggacccg
      301 cattcacagt atgcacagaa agaaagtcct acgtttaccg ggacacccaa agcgccaacg
      361 ccagcggcgg ggaataacac cacgcaggtt gcgaccaccg cgtttgttca ggctgcactg
      421 acggctatta ttaatggtgc gccagccacg ctggacacgc tgaaagaaat agccgtagcc
      481 attaacaatg atccgaaatt cagtaccacc attaataatg cgctggcact gaaagcgccg
      541 ctgttgagtc cggcactcac cggaacgcca acagccccca cggcggcgca gtcggtcaac
      601 aatacacaga ttgccactac ggcttttgtg aaatcggcga ttgcggcaat ggtgggttct
      661 gcacctgcgg cactggatac actgaacgaa ctggcggcgg cgctggggaa tgacccgaac
      721 tttgccacga caatgcttaa tgcactggca ggtaaacaac cgctggacaa tacgctgact
      781 aatttgagtg gaaaggatgt agcg
//
LOCUS       DAJVSD010000443          803 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.446, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000443 DAJVSD010000000
VERSION     DAJVSD010000443.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 803)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 803)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.446"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            283..477
                     /locus_tag="OQP62_004492"
                     /pseudo
     CDS             283..477
                     /locus_tag="OQP62_004492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460211.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DinI-like family protein"
BASE COUNT          258 a          174 c          195 g          176 t
ORIGIN      
        1 tcgataaaga tcgtccagga gcgctttaaa caagggatga gcgagatcga gataaagctt
       61 tattaacgaa ctttaacgaa cttcacagac cacttttgcc ccatccatgc cccacacata
      121 attttagtca acgccagacc ccatcagccc tgcagggcaa atcgataaca aacacgcccg
      181 cagtatgttc cccaaaattt aaaaacaagt ggttcatgcc ttgacagaca aaaccgccaa
      241 agcaaaatac tgtatataaa aacagtggct ggcgaagcac gtatgttcgt agaactggtt
      301 tatgacaagc gtaatgttga aggactcgaa ggggccagcg agatcattct ggccgaactg
      361 acgaagcgga tgcaccagat tttccctgat gccgaagtga gggtgaagcc gatgcaggca
      421 aactgcttga atagtgatac caacaaaagc gatcgcgaaa agttaaacag gtggcttggc
      481 tggtttcaga ttacgcgggt aggatcagat cactccaaat accgacgaca tagaattagg
      541 aattcagtga tgaatcaatg atggcaatac actgttcaga atgccatcgc gtatatgcga
      601 gcacagtgcc cgtattagag aacatcggag acgggaagta aagtatcggg gtctggtaga
      661 ccaggctgat gcaacgaagc cagcctggcc agtcatctgt aattggttga gagggcggag
      721 tcctgcgtac catgagtaag ataatcgtct aaaaccgtaa atttttaatg gaataagtct
      781 taatctgtac aaaggcatat tgc
//
LOCUS       DAJVSD010000444          792 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.447, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000444 DAJVSD010000000
VERSION     DAJVSD010000444.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 792)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.447"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
BASE COUNT          215 a          188 c          170 g          219 t
ORIGIN      
        1 tgccaaatac ccatgtagac gaaggcttaa tagtgatgcc aacaaaagcg atcgcgaaaa
       61 gttgaacagg tggctagttt cagattaaac acattggtta gtcatcctga acaagtaaaa
      121 tccgccgcaa ctggcagcca ttcaatactc gcactatcga acgatcgcca gcttgccgca
      181 gcccgttctt gcatacgatg tggctgcggt tccatcacat caggaatgtg aaaatctgga
      241 taaacctgcc acttaacctg aagcaggtct tcatagcggg tggtataccg aggcgaaagc
      301 atttctctta aggtcgccat ataaaaacat tctattacaa cgagttatct cctcctgcct
      361 ccgccccggc gcaaagctat agtttttcta tctccttgtg aaacaaacaa ttattcttgc
      421 tatagcgctg attaacaatc gttcgcgggc aacgtacatt cagcgagttt cagagcttcc
      481 tgacggaatt ccgccggtgc tgtttccggg acttcttact ggttgataca gatcctgcct
      541 cttacttgag aatttactca tttagccgta tgtccattat gggtggataa gatcatttat
      601 catcgtaagg gttgaaagcg ataagttaaa cttgtcctgg ctcaacaagg gaacccgact
      661 aatgatgagc tcttcatctt caaggcgttt tatgccttcc agcaagaata gatattaaat
      721 cgacaactgc tgccaggtct tgcaggcgca gtggacaatc gtgtggtaac agcctgagtc
      781 atttcttatt tt
//
LOCUS       DAJVSD010000445          774 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.448, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000445 DAJVSD010000000
VERSION     DAJVSD010000445.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 774)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.448"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..>774
                     /locus_tag="OQP62_004493"
     CDS             <1..>774
                     /locus_tag="OQP62_004493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000694233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="shufflon system plasmid conjugative transfer
                     pilus tip adhesin PilV"
                     /protein_id="HCS1723845.1"
                     /translation="QQMKQIGEAVNGYINIRYDKLSTLSNAAGTGTDPGPRTCSGSVC
                     EITYQTLINEGLLLSTYTGTNANKSSYKIILKRDGTSPNYVINGLITTSTAWIEGGKT
                     RYDLLGKAMQTAGIDSGMTKTTSIASGHSGQWSETSANFNNITSAGQLAFRVGFNSAL
                     YSVYLRRDGTLPMTGDLNLDGHNINNVAALNATGNITTTGDVQARNIKATGKIDADGN
                     ISAGNWMWAKNGYGDAIGFGGDGYSGGLGRDYEIKMLSN"
BASE COUNT          256 a          136 c          171 g          211 t
ORIGIN      
        1 tcaacaaatg aaacagatcg gtgaagcagt taatggctat ataaatatcc gttatgataa
       61 attatcaacc ttatccaatg ctgccggaac aggaaccgat ccgggtccaa gaacctgttc
      121 aggttcagta tgtgaaatta cttaccagac attgattaac gaaggtttgc tactttcaac
      181 ctacacaggc actaatgcta ataaatcctc gtataaaatc atattaaaac gagatggaac
      241 ttcacctaac tatgttatta atggtcttat aacgacatcg acggcatgga ttgaaggcgg
      301 aaaaacacgt tatgatttat tagggaaagc catgcaaaca gcaggtatag atagcggtat
      361 gactaaaaca acatctattg cttctgggca tagtggtcaa tggtcagaaa cgtctgctaa
      421 ttttaataat attacatccg ctggacagtt agcatttaga gttggtttta atagtgcgtt
      481 atattctgta tatttaagac gggatggaac cttgcccatg actggcgatc taaatcttga
      541 cggacacaat atcaacaatg tcgccgcact taatgccact ggcaacatta cgacgacagg
      601 tgacgtacag gcaagaaaca ttaaggctac tggaaaaatt gatgcggacg gtaatatctc
      661 agccggtaat tggatgtggg ctaagaatgg atatggggac gctataggtt ttggtggaga
      721 tggatattct ggaggtttag gtcgagatta tgaaataaaa atgctatcta acca
//
LOCUS       DAJVSD010000446          766 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.449, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000446 DAJVSD010000000
VERSION     DAJVSD010000446.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.449"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            317..502
                     /locus_tag="OQP62_004494"
     CDS             317..502
                     /locus_tag="OQP62_004494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001729072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3289 family protein"
                     /protein_id="HCS1723846.1"
                     /translation="MQDHFSLDSNDITHWLYSHWDVFKIWFVLQHYEKEGYEFKPFIH
                     KIILDALRRQGKKSPGA"
BASE COUNT          249 a          127 c          170 g          220 t
ORIGIN      
        1 atttgatgga aagatctgta acgctttgat gcctatagat agttattttt caccataaga
       61 agggttgttg aataaatcaa attaccctgt accgtcaaat gtacctaccg tcgacacggg
      121 taacggatct acatcttctg ggaagcaaaa ggcaacaaca aaagatgcgg aacaattgcc
      181 gacagaggga aataaaatcg tggagggcct atagctacgg gctgagatta tctgttcatg
      241 atatgtatgg cacacacgtt accataacat cattgaatgt atcaaaaatg cctacgcagc
      301 aaacgggcat tacaggatgc aggatcattt tagtcttgac agtaatgata taacacattg
      361 gctttatagc cattgggatg tctttaaaat ttggtttgta cttcaacatt atgagaaaga
      421 ggggtatgag tttaagccat ttatacacaa aatcattcta gatgcattgc ggcggcaagg
      481 gaagaaatcc ccgggagcat agataactct gtgaccgggg tttctgagcg cagccaacaa
      541 agaggcagct taaaggatga agtgtatatt acagaaataa ataccaccgt aaaaatctca
      601 ggtgtcagag gatattactc ctgatttggt atgtattgtc ggcaaggtat ttgtttgtat
      661 tgttaacata gcatagtccg atattttgca taaggaatgt gattgtgtca tgggtaataa
      721 cgaaaaaatt catttatatt gtgacaatcg ccatattatt ttgttc
//
LOCUS       DAJVSD010000447          753 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.450, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000447 DAJVSD010000000
VERSION     DAJVSD010000447.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.450"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            14..>753
                     /locus_tag="OQP62_004495"
     CDS             14..>753
                     /locus_tag="OQP62_004495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001563374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HCS1723847.1"
                     /translation="MAQQLILCTPNIPIINNLLPPWQLQILLVDDADINRDIIGKMLV
                     SLGQHVTIAASSNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMF
                     VALSASVATEDIHRCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDPSR
                     CSALLATDDMVINSKIFQSLDLLLADIENAVSAGKKIDQLIHTLKGCLGQIGQTELVC
                     YVIDIENRVKMGKIIALEELTDLRQKIR"
BASE COUNT          242 a          151 c          159 g          201 t
ORIGIN      
        1 aaaactctac gacctggcgc aacagttaat attgtgtaca ccaaatatac caataataaa
       61 taatttgtta ccaccctggc agttacagat tcttttggtt gatgatgccg atattaatcg
      121 ggatatcatc ggcaaaatgc ttgtcagcct gggccaacac gtcactattg ccgccagtag
      181 taacgaggct ctgactttat cacaacagca acgattcgat ttagtactga ttgacattag
      241 aatgccagaa atagatggta ttgaatgtgt acaattatgg cacgatgagc cgaataattt
      301 agatcctgac tgcatgtttg tggcgctatc cgctagcgta gcgacagaag atattcatcg
      361 ttgtaaaaaa aatgggattc atcattacat taccaaacca gtgacgttgg ctaccttagc
      421 tcgctatatc agtattgccg cagaatacca acttttacga aatatagagc tacaggagca
      481 ggatccaagt cgctgctcag cgctactggc gacagatgat atggtcatta atagcaagat
      541 tttccaatca ctggacctct tgctggctga tattgaaaat gccgtatcgg ctggaaaaaa
      601 aatcgatcag ttaattcaca cattaaaagg ctgtttaggt caaatagggc agactgaatt
      661 ggtatgctat gtcatagaca ttgagaatcg cgtaaaaatg gggaaaatca tcgcgctgga
      721 agaactaacc gacttacgcc agaaaatacg tat
//
LOCUS       DAJVSD010000448          753 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.451, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000448 DAJVSD010000000
VERSION     DAJVSD010000448.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.451"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..116
                     /locus_tag="OQP62_004496"
     CDS             <1..116
                     /locus_tag="OQP62_004496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463179.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="spore gernimation protein GerE"
                     /protein_id="HCS1723848.1"
                     /translation="KTISTQKRSAYKKMDITTDVELIHLMLNEFYISVDIT"
     gene            193..707
                     /locus_tag="OQP62_004497"
                     /pseudo
     CDS             193..707
                     /locus_tag="OQP62_004497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000370525.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          225 a          173 c          168 g          187 t
ORIGIN      
        1 taaaaacgat ttcaacacaa aagagatcag cctataaaaa aatggatatt actactgatg
       61 ttgaattaat ccatttgatg ctgaatgagt tttacatatc agtcgatatt acgtaatttt
      121 ttctaaaatg ttgctagaat ggtaggcaag gcaactctgg atatcatctt cagagatcgt
      181 tccgcaaacg ctatggataa ttcttcgctg tctatcggct ggctgacgat agactctaca
      241 ccgccagtac gttccatgaa gaataatagt gatattggcg ccggaggcga taatatcact
      301 aacatcaata caccgacctt ttattgggtc gcttagaagc tcacgcaaca attaagctga
      361 ctattgatac acaaccgtcc gccgaaccaa cgttgggatc gactgttagc agtctggata
      421 ataccgtcag ccttaaggga gtcgtggagg cgcatcagga tattcaggtg aaggtcacgg
      481 tcgacgatac ggactacacc gccagtgtcg ataacgatac cggtaactgg catgtttctg
      541 ttccgcaatc cgctattctg tcgggggaga atcagtatac cataacggcc accgatcccg
      601 ccggtaatag cgccgccgcc agtgtaacat ttacaggtac atcgcccacg gaaaatccgg
      661 tcaacaagag ttccggcgta gatgaaatga ttatgcctga taactaaaca tcaccatgcg
      721 aggtctcttc ggaggcctcc tgaaaaaaca gaa
//
LOCUS       DAJVSD010000449          751 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.452, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000449 DAJVSD010000000
VERSION     DAJVSD010000449.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.452"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..249)
                     /locus_tag="OQP62_004498"
     CDS             complement(<1..249)
                     /locus_tag="OQP62_004498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CesT family type III secretion system chaperone"
                     /protein_id="HCS1723849.1"
                     /translation="MYSRADRLLRQFSLKLNADSIAFDENRLCSFIIDNRYRILLTST
                     NSEYIMIYGFCGRPPDNNNLAFEFLNSNLWFAENNGPHL"
     gene            complement(371..706)
                     /locus_tag="OQP62_004499"
     CDS             complement(371..706)
                     /locus_tag="OQP62_004499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723850.1"
                     /translation="MNVTSGVNAQTPLLPPSEWGDDEKPVAEIVEFNAYGNKPRCLMC
                     LGTTALFTGAFSGVCSGAVASVSSGAAYTTALTILGASFGMGGIGMMGICAGLYLSAN
                     GVRTRPAWP"
BASE COUNT          210 a          182 c          143 g          216 t
ORIGIN      
        1 caaatgtggt ccattattct ctgcaaacca taaattagaa ttgagaaatt caaaagcaag
       61 attattatta tccggaggtc ttccgcaaaa accgtatatc attatatact cactgttagt
      121 gcttgttagt aagatacggt aacggttatc tataataaat gagcataatc tgttttcgtc
      181 aaaggcaatt gaatcggcat ttaatttcag tgaaaactgt cttaataagc gatcggctct
      241 tgaatacata acaccccata ctctatctaa agcgtttcta tataagtcat aagcctctgg
      301 tctggacgct taacaccccg tgtcatctcc ggaattcatc ttttccctat gacttgctgt
      361 gtttgctcat ttatggccag gctggccggg ttctgacgcc atttgcgcta aggtatagtc
      421 cggcgcatat tcccatcata ccaattcccc ccatgccaaa cgatgcgcct aaaatcgtca
      481 gagcggtagt atatgcagca ccactactga cactggcgac agcccctgag cataccccac
      541 tgaaagcacc tgtaaacaat gccgtggttc ccaggcacat taaacatctg ggtttattgc
      601 cgtaagcgtt aaactcaacg atttcagcta ccggtttttc gtcatcaccc cattcagaag
      661 gggggagcaa tggcgtttgc gcattcacgc ctgaagtgac attcatataa acctcttcat
      721 gcacatgcct gtttatgttt atgagaaaag c
//
LOCUS       DAJVSD010000450          732 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.453, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000450 DAJVSD010000000
VERSION     DAJVSD010000450.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.453"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(96..>732)
                     /gene="pipA"
                     /locus_tag="OQP62_004500"
     CDS             complement(96..>732)
                     /gene="pipA"
                     /locus_tag="OQP62_004500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type III secretion system effector protease
                     PipA"
                     /protein_id="HCS1723851.1"
                     /translation="TYGLNTADTPVFPDIPEHAPNPSRLRLAHDSLAINSEFRLEPEC
                     VVEYLISGAGGIDPDTEIDDDTYDECYDELSSVLQNAYTQSETFRRLMNYAYEKELHD
                     VEQRWLPGAGEAFETTVAQEHFKLSEGRKVICLNLDDSDDSYTEHYESNEGRQLFDTK
                     RSFTHEVVHALTHLQDKEENHPRGPVVEYTNIILKEMGHPSPPRMVYIFNK"
BASE COUNT          178 a          146 c          171 g          237 t
ORIGIN      
        1 tgggcgctta gaatatagtt agaaaatact gctagaacat ttcccgaaaa aacggactac
       61 gtgggttttt agtttctttt cgtttcttga tgtgtctatt tattgaagat gtagaccatt
      121 ctgggaggtg aaggatgccc catctctttc agaataatgt tggtatattc gacaacaggg
      181 cctcttggat gattttcttc tttatcctga agatgggtca gtgcatgtac aacttcatga
      241 gtaaatgaac gttttgtgtc aaaaagttgt cttccttcgt tactttcata atgttcggta
      301 tatgaatcat cagaatcgtc cagattgaga caaataactt tcctgccttc tgaaagtttg
      361 aagtgttcct gagccacggt agtttcaaag gcttcgcctg cccccggtag ccagcgctgc
      421 tccacatcat gtagttcttt ttcatatgcg taattcatca gtctgcggaa tgtttcgctt
      481 tgggtatacg cattttgaag tacggaggat agttcatcgt agcattcgtc ataagtgtcg
      541 tcatcaattt ctgtatcagg gtctattcca cccgcgcctg agataaggta ctccaccaca
      601 cactctggct ccagacggaa ttcactgttt atggcaaggc tgtcatgagc aaggcgtagc
      661 cgtgaggggt ttggtgcatg ttcgggaata tcggggaaaa caggtgtatc tgcggtattt
      721 aatccatatg tg
//
LOCUS       DAJVSD010000451          726 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.454, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000451 DAJVSD010000000
VERSION     DAJVSD010000451.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.454"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..162
                     /locus_tag="OQP62_004501"
     CDS             <1..162
                     /locus_tag="OQP62_004501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001729069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin immunity protein"
                     /protein_id="HCS1723852.1"
                     /translation="NLLRHFNKITQHPDGGDLIFYPSEEREDSPEGVIEELKRWRKSQ
                     RLPCFKENK"
BASE COUNT          222 a          122 c          177 g          205 t
ORIGIN      
        1 aatcttctac gccattttaa taaaattact caacaccctg atggcgggga tttgatattt
       61 tatccatcag aggaacgaga agatagtcct gaaggagtta ttgaagagct aaaacgctgg
      121 cggaagtctc agagactccc ctgttttaag gaaaataagt agcgatcagt ggtgaggagt
      181 ttgtcaaccg gaaccgggat gataatgcag tgaccgttaa aaggcaaaaa tatgtcagtt
      241 aagggagtaa ctatcaaagg cataattctg agtgttttta cactgaaccg tagtgccaga
      301 ggatatattt atctgacgcg aatcgtatga agtgatagct ttacgtacgg tttgtgagag
      361 gctgtaggga aagatcctac ggcctactca ctaagagtct atttttgtac attgtttcat
      421 gttctggaaa cacgataaag tatgagcctg acgaactctc gcccgctaaa gttccacgct
      481 ggaacctgac ggccaggagt cggacatctt tgcggtggcg aatttacatc cgttcaaaaa
      541 aatctaatgt aagagataga tgatatggct aaatatatat tcctctttat ctggattgtg
      601 acattttctg tcagcgctgg tgagcgagga tattatttat tcgtatgggg taaccctgaa
      661 gggaaggaat attttaaaga atatagagct gatgaaagga tatatgcggt caataaatcc
      721 tgttgg
//
LOCUS       DAJVSD010000452          724 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.455, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000452 DAJVSD010000000
VERSION     DAJVSD010000452.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.455"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            118..>724
                     /locus_tag="OQP62_004502"
     CDS             118..>724
                     /locus_tag="OQP62_004502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3626 domain-containing protein"
                     /protein_id="HCS1723853.1"
                     /translation="MLKPIFYSGSVKVPECLETDKEKNVGRTPLSSDIQQIKNVVEDI
                     PPFPESRAVGGSVSAAYRLSFDEVFCGLSNEERKKVYGRLFGKQVLAHIHSRCQRDAD
                     IIREKALRRISRECGTEIDCALLLNKMVDILQNARLTINFNAAKIDFVSLLKNKEYLN
                     SYALGCRPGDLPAYNVGRDSVETKAFELEKLADSPYAPYGQT"
BASE COUNT          228 a          128 c          166 g          202 t
ORIGIN      
        1 attagtgtct ttatttgcac ttctacaaga ctgttaagag gtgttgaaat atcagcctgg
       61 taaagaatac gtcagcgaaa gtgaatgcta tattagtcat aaaaattcag gagacatatg
      121 ctcaaaccta tcttctacag tggaagtgtg aaggttccgg aatgtctgga aacagataag
      181 gaaaaaaatg tcggacgtac tcctctgtct tcagacattc agcaaattaa aaatgttgtt
      241 gaagatattc cgccatttcc agaaagcaga gcggtgggag gttctgtaag cgcagcgtac
      301 aggctttctt ttgacgaagt gttttgcggt ctcagcaatg aagagcgtaa aaaggtgtat
      361 ggtcgccttt ttggaaaaca agtacttgcg catattcatt ccaggtgtca gcgcgacgct
      421 gacataataa gagaaaaagc gctcaggcgg ataagccgtg agtgtggtac cgaaatagat
      481 tgcgctctct tactaaataa gatggtggat attttacaaa atgcccggct gacaataaat
      541 tttaatgcag caaaaattga ctttgtctct ctcttaaaaa ataaagaata tctgaactct
      601 tatgcattag gttgcagacc aggagattta cctgcttata atgtcgggcg tgattcagtt
      661 gaaactaaag catttgaact ggagaagctt gcagattcac cttatgcccc atatggtcag
      721 acag
//
LOCUS       DAJVSD010000453          724 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.456, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000453 DAJVSD010000000
VERSION     DAJVSD010000453.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.456"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(208..>724)
                     /gene="rfaY"
                     /locus_tag="OQP62_004503"
     CDS             complement(208..>724)
                     /gene="rfaY"
                     /locus_tag="OQP62_004503"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lipopolysaccharide core heptose(II) kinase RfaY"
                     /protein_id="HCS1723854.1"
                     /translation="FSPKVKSTERFFKSLVKGDYYEKLFHQTDRVRREGFAALNDFYL
                     LAEIKTLRYVKTYVMIIEYIEGIELVDMPEISDEVRGKIKQSIYSLHQHGMVSGDPHK
                     GNFILQGNEIRIIDLSGKRPSRQRKAKDRIDLERHYGIKNNVRDIGFYLLIYKKKLRN
                     FLRRIKGKEKR"
BASE COUNT          225 a          158 c          102 g          239 t
ORIGIN      
        1 ttcttttcgc aataagttgc agaacatcgg cgtgagttat gaagttaacg ctgcccataa
       61 aaaactcgta tgtttatcat gcaacctata aataaatgtt atattcaata gctaatatta
      121 catctcaaat tctctcaagt atgtcataac gctgcagcaa ataaaagtca gtcagcccct
      181 taaattaaac caaacgtact acattgatca gcgcttttcc ttacccttaa tacgacgcaa
      241 gaaatttcga agttttttct tataaatcaa taagtaaaat ccaatatctc tcacattatt
      301 tttgatacca taatgtcttt ctaaatcaat acgatccttt gcttttcgtt gcctggaagg
      361 tctttttccg gacaaatcga taattctgat ctcattacct tgcaggataa agttaccttt
      421 atggggatcg cccgaaacca taccatgctg atgcagagaa tatatcgact gtttgatttt
      481 ccctctcacc tcgtcagaaa tttctggcat atcaacaagt tcaatacctt caatatactc
      541 aattatcatc acgtatgttt ttacatagcg taatgtttta atctccgcca gcaggtaaaa
      601 atcattaagc gccgcaaacc cttcacgccg cacgcgatct gtctgatgaa aaagcttttc
      661 gtagtaatct ccttttacta acgatttgaa aaagcgttca gtacttttta cttttggact
      721 aaat
//
LOCUS       DAJVSD010000454          722 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.457, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000454 DAJVSD010000000
VERSION     DAJVSD010000454.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 722)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.457"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            134..580
                     /locus_tag="OQP62_004504"
                     /pseudo
     CDS             134..580
                     /locus_tag="OQP62_004504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343613.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          223 a          147 c          169 g          183 t
ORIGIN      
        1 tagattaacg ttaacaacac tttgaacgtg taatgaatat gggggtataa tataagtatt
       61 gggagattgt aattaaaaat tatgtaatta tctgattatt atatattcac tccagcaaag
      121 gagaaaggca attatggacg aaaagaaact cacagctctt gcggctgaac tggctaaagg
      181 tcttaaaact gaagccgacc tcagtcagtt tttccatatg ctgacgaaat taaccgtcga
      241 aacggcgctc aatgctgagc tggctgacca tctcgggcat gagaaaaatg ctcctaaaac
      301 gagctcaaac tcccacaatg gctactcatt aaaaacggtg ctgtatgatg gcggcgagat
      361 agtgctgaac atgctgcgtg gccgtgaaaa tacctttgaa ctgtagctga ttaaggagca
      421 tcagacgcgt attacgagat ggaaagtcag atttatccct ttatgccaaa ggcatgacat
      481 gactacccgc gaaatcatcg ccaccttcaa agagatgtac gacgctgatg tgtcgcccat
      541 gctgatactt aagatcaccg ccgcagtaaa agagttggtc aaaggggcgt caaaaaatgg
      601 agtatgccga tccaggactg gtcgctggca atgattcgct ttattatcga gttcggtgac
      661 cgcctgagcg atcaccgtta atatagtggc agttacacag tatgactggc atgttccata
      721 tt
//
LOCUS       DAJVSD010000455          716 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.458, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000455 DAJVSD010000000
VERSION     DAJVSD010000455.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.458"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            50..>716
                     /gene="artA"
                     /locus_tag="OQP62_004505"
     CDS             50..>716
                     /gene="artA"
                     /locus_tag="OQP62_004505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011233073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pertussis-like toxin subunit ArtA"
                     /protein_id="HCS1723855.1"
                     /translation="MKKLIFLTLSIVSFNNYAVDFVYRVDSTPPDVIFRDGFSLLGYN
                     RNFQQFISGRSCSGGSSDSRYIATTSSVNQTYAIARAYYSRSTFKGNLYRYQIRADNN
                     FYSLLPSITYLETQGGHFNAYEKTMMRLQREYVSTLSILPENIQKAVALVYDSATGLV
                     KDGVSTMNASYLGLSTTSNPGVIPFLPEPQTYTQQRIDAFGPLISSCFSIGSVCHSHR
                     GQRA"
BASE COUNT          215 a          138 c          150 g          213 t
ORIGIN      
        1 tgcagtgcga cacaatgctt tggacccaag taagagggga gaagaaataa tgaaaaagtt
       61 aatattctta accttatcta tagttagctt taataactat gctgtagatt ttgtgtatcg
      121 tgtggactca accccgccgg acgttatttt tcgcgatggg ttttcactac ttgggtataa
      181 ccgtaacttt cagcaattta ttagtggaag gtcatgtagt ggtggaagta gtgacagtcg
      241 ctatattgca acaacctcaa gtgttaatca aacatatgct atagccagag cgtactattc
      301 tcgctcaaca ttcaaaggta atttatacag atatcagatt cgtgcagata ataatttcta
      361 cagcttgctc ccatccatca cctatctgga aacgcaaggt ggtcacttta atgcttatga
      421 aaaaacgatg atgcgattgc aaagagagta tgtttccaca ttatctattt tacccgagaa
      481 tattcaaaag gccgtggcgc tagtttatga tagcgcaacc ggtctagtaa aggatggtgt
      541 aagcacaatg aatgccagtt atttaggttt aagcactacg tctaatcctg gtgtgatacc
      601 ttttcttccg gaaccgcaga cgtataccca acaacgaatt gatgcattcg gcccattaat
      661 aagttcatgc ttttcaatag gtagcgtatg tcattcacat cgagggcaaa gagctg
//
LOCUS       DAJVSD010000456          708 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.459, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000456 DAJVSD010000000
VERSION     DAJVSD010000456.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.459"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            12..>708
                     /gene="sseL"
                     /locus_tag="OQP62_004506"
     CDS             12..>708
                     /gene="sseL"
                     /locus_tag="OQP62_004506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001017745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPI-2 type III secretion system effector
                     deubiquitinase SseL"
                     /protein_id="HCS1723856.1"
                     /translation="MNICVNSLYRLSTPQFHSLYSEEVSDEALALLFSAVENGDQNCI
                     DLLCNLALRNDNLGHRVEKFLFDLFSGKRSGSPDIDKKINQACLVLHQIANNDITKDN
                     TEWKKLHAPSRLLYMAGSATTDLSKKIGIAHKIMGDQFAQTDQEQVGVENLWCSARML
                     SSDELAAATLGLVQESPLLSVNYPIGLIHPTTKENILRTQLLEKMAQSGLSENEVFLI
                     NTGDHWLICLFYKL"
BASE COUNT          230 a          136 c          145 g          197 t
ORIGIN      
        1 aacagagcaa aatgaatata tgtgtaaatt cactttaccg attgagcaca ccgcaatttc
       61 acagtttata ttcagaagag gtgagcgatg aggcgcttgc gttgttgttt agcgccgtag
      121 agaacggtga tcagaattgt attgatctgt tatgcaatct tgcgttacgc aatgataacc
      181 tgggacatag agttgagaaa tttctttttg atctctttag cggaaaaaga tcgggatcac
      241 cagacataga caaaaaaatc aatcaggctt gccttgtatt acatcaaatc gccaataacg
      301 atataacaaa agataatact gagtggaaaa agctacatgc cccttccaga ttactttata
      361 tggccggttc cgcgacaacc gacctttcta aaaaaatagg aatagcacat aaaattatgg
      421 gcgaccagtt cgctcagaca gatcaagaac aggtaggagt tgaaaatctt tggtgtagtg
      481 cgcgaatgtt gtcgtcagat gagctagcag ccgcaacgct aggtctggtt caagaatcac
      541 ctcttctctc ggtaaactat cctattgggc ttattcatcc taccaccaaa gaaaatatat
      601 tacgcactca gctacttgaa aagatggctc aatcaggatt atctgaaaat gaagtctttc
      661 tgataaatac aggagatcac tggcttatct gtttatttta taaacttg
//
LOCUS       DAJVSD010000457          696 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.460, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000457 DAJVSD010000000
VERSION     DAJVSD010000457.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.460"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..574
                     /gene="pipB"
                     /locus_tag="OQP62_004507"
     CDS             <1..574
                     /gene="pipB"
                     /locus_tag="OQP62_004507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SPI-2 type III secretion system effector PipB"
                     /protein_id="HCS1723857.1"
                     /translation="TDPMVTIEVNKNGKTVTDKVDSERFWNVCRMLKLMSKHNIQQPD
                     SLITEDGFLNLRGVNLAHKDFQGEDLSDIDASNADFRETNLSNVNLVGANLCCANLHA
                     VNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTDTKLNGAKLDKIALTLAKA
                     LTGADLTGSQHTPTPLPDYNDKTLFPHPIF"
BASE COUNT          236 a          140 c          126 g          194 t
ORIGIN      
        1 tacggatccc atggtcacta ttgaagtgaa caaaaatgga aaaactgtaa cggataaagt
       61 tgatagtgag agattttgga atgtatgtcg aatgttaaaa ctgatgagta aacataatat
      121 acaacagcct gattcactta taaccgagga tggttttctg aacctgcgcg gagtaaacct
      181 agctcataaa gatttccagg gagaagattt gtcagacata gatgcttcta atgcagattt
      241 ccgtgaaaca aatctatcta atgtaaattt agtcggtgca aatttgtgtt gtgcaaatct
      301 acacgctgta aatctaatgg gttcaaacat gactaaagca aacctgactc acgcagacct
      361 gacttgcgct aacatgtccg gtgtaaactt aaccgctgca attctattcg gctcagactt
      421 aactgacacc aaactaaatg gtgcaaaatt agataagata gctctaactt tagcgaaagc
      481 attaacagga gccgatctga caggtagtca acatacccct actccactcc cggattacaa
      541 tgataaaacg cttttccccc atccaatatt ttagtcgaga taaagggatt ttataaacaa
      601 gaagtattca aacagaagcc ctccttgttt tattaaacaa accccgcccc taagcttcat
      661 tataaataac attttcagcg tattacttgt tggttt
//
LOCUS       DAJVSD010000458          677 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.461, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000458 DAJVSD010000000
VERSION     DAJVSD010000458.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.461"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            192..>677
                     /gene="rcsA"
                     /locus_tag="OQP62_004508"
     CDS             192..>677
                     /gene="rcsA"
                     /locus_tag="OQP62_004508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator RcsA"
                     /protein_id="HCS1723858.1"
                     /translation="MSTIIMDLCSYTRLGLSGYLVSRGVKKREINDIETVDELAIACG
                     AHQPSVVFINEDCFIHTPSDSQQIKQIINQHPDTLFIVFMAIANVHFDEYLLVRKNLL
                     ISSKSIKPDSLDTLLGDILKKESGISGTINLPTLSLSRTESSMLRMWMEGQGTIQISD
                     RM"
BASE COUNT          204 a          121 c          148 g          204 t
ORIGIN      
        1 tcactcacat aacgcaacat tcactttact ttaagatgat tcctggcaaa ttatatgtaa
       61 ctttacggga tagtaagttc gcctgaaaaa ccgcgtaagc gttgtctaag gtgactattc
      121 gtgttccgtc tgattatggt gagttattca ggtaagggga attatcgtta cgcattgagt
      181 gagggtatgc catgtcaacg attattatgg atttatgcag ttacacccgg ctagggttaa
      241 gcgggtatct ggtcagcaga ggggtgaaaa aaagggaaat caacgacatc gaaaccgttg
      301 acgaactcgc tatcgcttgt ggcgcacatc agccttcggt ggtgtttatt aatgaggact
      361 gtttcattca tacgccttca gacagtcaac aaataaagca aatcattaat cagcatcctg
      421 acacgttatt tattgttttt atggcaattg ctaatgtgca ttttgatgaa tatttattag
      481 taagaaaaaa cttattgatt agctctaaat cgattaaacc tgactcgctg gatacccttc
      541 ttggcgatat tctgaaaaaa gagtcgggta tttcaggaac cataaattta ccaacattat
      601 cgttaagtcg aactgaatcc agcatgttac gaatgtggat ggaaggtcag ggaaccattc
      661 agatttctga cagaatg
//
LOCUS       DAJVSD010000459          673 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.462, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000459 DAJVSD010000000
VERSION     DAJVSD010000459.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.462"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(145..540)
                     /locus_tag="OQP62_004509"
     CDS             complement(145..540)
                     /locus_tag="OQP62_004509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001731400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen polymerase"
                     /protein_id="HCS1723859.1"
                     /translation="MPRAIWPDKPEDFGALYLAKVFFPDAFYRNQGAPAFGYGELYAD
                     FGLFTPVWLVISGVFKGVLAKYFSNKTQETKSAHYFIMFLFCIGISVIPVSMGWLFPE
                     HLMIAFMVYIASSFVFSEHIRFVLLRNNK"
BASE COUNT          238 a          144 c          115 g          176 t
ORIGIN      
        1 atcatctaga aacgcaagca ctatcatgaa tatatcataa gtaatttacg ttggtaatga
       61 tggctcagca aacccaacaa gctttacagg aacaattttt acgcttcaga gccaaataaa
      121 acggcggcat tgccgccgta taacttattt attgtttctt agtaaaacga atcttatatg
      181 ctctgaaaaa acaaaggaag atgcaatgta taccataaaa gcaatcatca aatgctcagg
      241 gaacaaccat cccatgctaa caggaatcac acttattcca atgcaaaata ggaacattat
      301 gaaataatgc gctgactttg tttcctgagt tttattggag aaatacttag ctaggacgcc
      361 tttaaatact ccagatataa ctaaccaaac tggtgtaaaa agcccgaaat ctgcgtatag
      421 ttcaccatac ccgaaagcag gagcgccctg atttctgtag aatgcatcag ggaaaaatac
      481 ttttgccaga tacaatgcgc caaaatcttc aggcttatca ggccaaatag ccctcggaat
      541 cctcgagtaa acctcgctct ccattagtaa ttttccgtac ataaagtcaa agtttgagga
      601 agcaacaaga acagcattac gggtataatc cgagtaatta gccatatttt ctatcggatt
      661 cccatcagta aac
//
LOCUS       DAJVSD010000460          662 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.463, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000460 DAJVSD010000000
VERSION     DAJVSD010000460.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 662)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.463"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..581
                     /locus_tag="OQP62_004510"
     CDS             <1..581
                     /locus_tag="OQP62_004510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000493739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723860.1"
                     /translation="NIILTSDGTHFISHSAFEELLSHSSDFSTSAQRIAQYVQWCGAK
                     DNASFGIINCNDIENSLNSHKDIGVELWDPHGNLHIMWMKNYPAAQNYFSQNIVDDQD
                     KEPSPIIDDDGFENKKTLNNPSTKNLELDSETPQRELFSNESPEKSQDPSITSKAIKQ
                     RKNKDKKKAIEKIKKDQSVMINIKDEENKNED"
BASE COUNT          272 a          112 c          110 g          168 t
ORIGIN      
        1 aaaatataat attgacatcc gatggaactc atttcatttc tcattcagca ttcgaagagt
       61 tattaagtca ttcatctgat ttttctacat cagcgcagag aatagctcaa tatgttcaat
      121 ggtgcggtgc gaaagataac gcttcatttg gaattattaa ttgcaatgat atagaaaaca
      181 gcctcaactc ccataaagat attggtgtag agttatggga ccctcatggg aatctacata
      241 tcatgtggat gaaaaattat cctgcagcgc agaattactt ctctcaaaat atagtggatg
      301 atcaagataa agaaccttca cctattatag acgatgatgg ttttgaaaat aaaaaaacac
      361 taaacaatcc ttcaacaaaa aatctagaat tagattctga aacaccacaa agagagctat
      421 tctcaaacga atccccagaa aaatctcaag atccatccat tacaagcaaa gcaatcaaac
      481 aaagaaaaaa caaagataaa aagaaagcta ttgaaaagat caaaaaagac caatctgtaa
      541 tgataaatat caaggatgag gaaaacaaaa atgaagatta atcacgtcct accagaaaga
      601 tattcattaa agagcactga actcggtggt ggcatggggg acattttaat atgtaaggat
      661 aa
//
LOCUS       DAJVSD010000461          659 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.464, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000461 DAJVSD010000000
VERSION     DAJVSD010000461.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 659)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.464"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(274..>659)
                     /gene="sopF"
                     /locus_tag="OQP62_004511"
     CDS             complement(274..>659)
                     /gene="sopF"
                     /locus_tag="OQP62_004511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type III secretion system effector SopF"
                     /protein_id="HCS1723861.1"
                     /translation="NDNVKTNCTFSPFDIYGHRFGLDTSKLSTFCHMENLIASCQNDF
                     FGYNCFKSLVKMAKGEKFLAHSNYGTGYEGNYIEAHIHGDVCLFRDIKHVYLSLQENS
                     YSESQLYDYAKQINQALNRDCIILY"
BASE COUNT          207 a          129 c          113 g          210 t
ORIGIN      
        1 taaatcactc ctgtggtaat gcaggacacc tgatgactgt taaggtcgct tcatctgtag
       61 cgccggtgaa ttccagcgat ttaagtgaaa agtagccagc aggcgcttct gctggtccat
      121 attcctctat ttttcaggcc atactgaggt gccacacagg tatctgccag agcggtcctg
      181 ctataataaa tataaaagca gttactgcct accttaagaa gtatgtgctc atgatcattt
      241 aaagctcttt taaagagcct gataataagc ttgtcaatat aatattatgc agtctctatt
      301 aagcgcctgg tttatttgtt ttgcataatc atatagttga ctttccgagt aagagttttc
      361 ttgcaaagac aaataaacgt gctttatatc tctgaataaa catacatcac catgaatatg
      421 agcctctata taattccctt catagcctgt accataatta gaatgagcta aaaatttttc
      481 gcccttagcc attttaacca aactcttaaa gcaattataa ccaaaaaaat cattttgaca
      541 ggatgcaatc aggttctcca tatggcaaaa tgtagataat ttactagtat ccaggccaaa
      601 tctgtggccg tagatatcaa aaggtgagaa tgtacaattt gtttttacat tatcattta
//
LOCUS       DAJVSD010000462          644 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.465, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000462 DAJVSD010000000
VERSION     DAJVSD010000462.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.465"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            174..347
                     /locus_tag="OQP62_004512"
     CDS             174..347
                     /locus_tag="OQP62_004512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311393.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2633 family protein"
                     /protein_id="HCS1723862.1"
                     /translation="MRKRHRFNTRMTRIVLLISFLFFFGRFVYSSIGAWQHHQDKKEA
                     QQSSLSVTTPGQR"
BASE COUNT          175 a          148 c          119 g          202 t
ORIGIN      
        1 acgcaatttt acattaagag gaattgacca tcggttcgca gtatgcctta atgtagagtg
       61 aacgcaggct tgttacgttc ttcgccttga taataccttt gaagaaccca gcctgatccc
      121 gcccataccg ctgggccaac gttaaggaac cctttgtaag tcaggccaac agtatgcgaa
      181 aacgacatcg atttaacact cgcatgaccc gtatcgtact gcttatcagt tttctcttct
      241 tctttggacg tttcgtctac tcttctatcg gcgcctggca gcaccatcag gataaaaaag
      301 aagcgcaaca gtcatcgctt tcggtcacca cgccgggaca acgttaagct gttatccgtt
      361 aaaatagtga tggcggtatt atcgtcacag gtttgccgtg ttatccagcg ctctgttatc
      421 cccttccctg gcttagcatg aaccgataaa aacaaagcat cgtatcatct aatgctttgt
      481 tttttagtct aaaaaaaaca atcaactaca agaaacgata gtttactttt tttaagatta
      541 gtcttaaata cattcctttt tgcgttatta cctaaacaag gaattgtgat gaatttaaaa
      601 aaaaaatgct ttgcctctgg ttttgtttgc ctctttttct cttg
//
LOCUS       DAJVSD010000463          624 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.466, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000463 DAJVSD010000000
VERSION     DAJVSD010000463.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 624)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.466"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            64..579
                     /gene="ompX"
                     /locus_tag="OQP62_004513"
     CDS             64..579
                     /gene="ompX"
                     /locus_tag="OQP62_004513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpX"
                     /protein_id="HCS1723863.1"
                     /translation="MKKIACLSALAAVLAFSAGTAVAATSTVTGGYAQSDAQGVANKM
                     SGFNLKYRYEQDDNPLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASI
                     YGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDV
                     GTWIAGVGYRF"
BASE COUNT          151 a          147 c          157 g          169 t
ORIGIN      
        1 tttcccatta atttttgata tatttaaaac ttaggactta cttgaagcac atttgaggtg
       61 gttatgaaaa aaattgcatg tctttcagca ctggccgctg ttctggcttt ttccgcaggt
      121 actgcagtag ctgctacttc tactgttacc ggtggttacg ctcagagcga cgcgcagggc
      181 gtagcgaata aaatgagcgg tttcaacctg aagtatcgtt acgagcagga cgacaacccg
      241 ctgggtgtaa tcggttcctt cacctacacc gaaaaagatc gtactaacgg tgcgggcgat
      301 tacaataaag gtcagtacta cggcatcact gccggcccgg cttaccgtct gaacgattgg
      361 gcgagcatct acggtgtagt cggtgtgggt tacggtaaat tccagacgac cgattaccca
      421 acctacaaac atgacaccag cgattatggc ttctcctatg gcgctggtct gcaattcaac
      481 ccgatggaaa atgttgctct ggacttctct tacgagcaga gccgtattcg tagcgttgac
      541 gttggcacct ggattgctgg cgtaggttac cgcttctaat cacgtcggtg aaaatgaaaa
      601 atccgccttt cggggcggat tttt
//
LOCUS       DAJVSD010000464          615 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.467, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000464 DAJVSD010000000
VERSION     DAJVSD010000464.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.467"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..457
                     /locus_tag="OQP62_004514"
     CDS             <1..457
                     /locus_tag="OQP62_004514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000975154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HCS1723864.1"
                     /translation="KLKNYIEKSPITSNFRKLPLLVQLIIIYLVTTMYSVVVDKNKEL
                     AMNLMEQAQQYVSKSISPRTHFKELTKQLPREVDISTLKHIRIITGENVRLRNTPSMQ
                     GDVLVKLEKYTPVIVIDKSDRKWLYVQLSFGEQKIYGWVNRSYTKAINH"
BASE COUNT          234 a          113 c          102 g          166 t
ORIGIN      
        1 aaaattaaaa aattatatcg aaaaaagccc tataacttca aactttagaa aattaccatt
       61 attagtacaa ctcatcatca tttatcttgt aaccaccatg tattcagtcg ttgtggataa
      121 aaacaaagaa ttagcaatga atttaatgga acaagcgcaa caatatgtta gtaaatctat
      181 atcaccaaga actcatttta aagaattaac aaaacagtta ccccgcgaag ttgacattag
      241 cacattaaaa cacataagaa taattactgg agaaaatgtc cgattacgga acacaccatc
      301 aatgcaaggc gatgtattgg ttaagttgga aaaatatact cccgtgatcg ttatcgataa
      361 aagtgacagg aaatggttat atgtacaact gtcattcgga gaacaaaaga tctatggttg
      421 ggtcaatcgt tcctatacaa aagcaataaa tcattaagtc ataaaatttg aatgaattct
      481 cattcctaat gaataagtat aaaatacttt tagccacccg acttctaagt gcagatcggg
      541 tggttacgac accaaaaccg aagtctgtgg tcatggcttc cgcacaatgg cctgtagcgc
      601 cctgaacgag tctgc
//
LOCUS       DAJVSD010000465          600 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.468, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000465 DAJVSD010000000
VERSION     DAJVSD010000465.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 600)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.468"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..548
                     /gene="sopE"
                     /locus_tag="OQP62_004515"
     CDS             <1..548
                     /gene="sopE"
                     /locus_tag="OQP62_004515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000161708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SPI-1 type III secretion system guanine
                     nucleotide exchange factor SopE"
                     /protein_id="HCS1723865.1"
                     /translation="ESSATHFHRGSASEGRAVLTNKVVKDFMLQTLNDIDIRGSASKD
                     PAYASQTREAILSAVYSKNKDQCCNLLISKGINIAPFLQEIGEAAKNAGLPGTTKNDV
                     FTPSGAGANPFITPLISSANSKYPRMFINQHQQASFKIYAEKIIMTEVAPLFNECAMP
                     TPQQFQLILENIANKYIQYTP"
BASE COUNT          201 a          135 c          119 g          145 t
ORIGIN      
        1 ctgagtcttc tgcaacacac tttcaccgag gaagcgcatc tgagggccgg gcagtgttga
       61 caaataaagt cgttaaagat tttatgcttc aaacgctcaa tgatatagat attagaggta
      121 gtgcgagtaa agaccccgca tacgccagcc agacccgtga agctatacta tcggcagttt
      181 acagcaagaa taaagatcag tgttgtaatt tgctcatcag caaagggatc aacatagcgc
      241 cttttcttca ggaaattggc gaagcagcga aaaatgcagg tctgcccgga acaaccaaaa
      301 atgacgtttt tacgccaagc ggcgcagggg ccaatccttt tataactccg ttgatttcat
      361 cagcaaacag taagtatcca cgtatgttta tcaatcaaca tcagcaggca tcctttaaaa
      421 tctatgcgga gaagatcatt atgacagaag ttgcaccact gtttaatgag tgtgctatgc
      481 cgactccaca gcaattccaa ctgatactag aaaacattgc taataaatat atacaataca
      541 ctccctgaac acagaaaaac caaaaaatat gcggagcctc ttcctgatta atatgaacca
//
LOCUS       DAJVSD010000466          589 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.469, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000466 DAJVSD010000000
VERSION     DAJVSD010000466.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 589)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.469"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..>589)
                     /gene="pilV"
                     /locus_tag="OQP62_004516"
     CDS             complement(<1..>589)
                     /gene="pilV"
                     /locus_tag="OQP62_004516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000744514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shufflon system plasmid conjugative transfer
                     pilus tip adhesin PilV"
                     /protein_id="HCS1723866.1"
                     /translation="NIKATGKVDADGDISSGRYLIAKSKDEDASIKIGGDGTGNHNFM
                     FESQKRTSVVFFPSVNSALLTYKFRGNINILSPSGDSVGVKLNGTTGNITASGNIEAA
                     QNVKGATLESTGRATVGEFVQLNGQAEVGKVCQSNGLQGRTAKGKILSCVNGVWTGSV
                     QINNSQCKWFSPANAFSYFGEYSGQLHEKPIICPAG"
BASE COUNT          174 a          131 c           88 g          196 t
ORIGIN      
        1 atcctgctgg acaaattata ggtttttcat gaagttgccc actgtattct ccaaagtatg
       61 aaaaagcatt agccggggaa aaccatttac attgactatt atttatttga accgatccgg
      121 tccatacacc attaacacaa gataaaattt tcccttttgc tgttcttcct tgtaatccat
      181 tagattgaca cacttttcca acctcagcct gtccgttcaa ttgaacaaac tcacccaccg
      241 tagcgcgtcc agtggattct aatgtagcgc ctttgacatt ttgggcggcc tctatgtttc
      301 cagaggcagt gatatttcca gtggtgccat ttaatttaac accaactgaa tccccagaag
      361 gacttaatat gtttatattc ccacgaaatt tataagttaa caatgcagaa ttaacgcttg
      421 gaaaaaaaac aacagatgtt cttttttgag attcaaacat aaaattatga tttccagtgc
      481 catcgcctcc aatttttatt gatgcatctt catctttgct tttagcaatc aaatatcttc
      541 ctgatgaaat atcaccgtca gcatcaactt ttcctgtagc tttaatatt
//
LOCUS       DAJVSD010000467          588 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.470, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000467 DAJVSD010000000
VERSION     DAJVSD010000467.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 588)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.470"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            250..>588
                     /locus_tag="OQP62_004517"
     CDS             250..>588
                     /locus_tag="OQP62_004517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HCS1723867.1"
                     /translation="MLSKKIGLSMIVLGIMSSSAFADSIVEGRTLNVAVSPASPPMLF
                     KSADGKLQGIDLELFSSYCQSRHCKLNITEYAWDGMLGAVASGQADVAFSGISITDKR
                     KKVIDFSEPYY"
BASE COUNT          162 a          116 c          118 g          192 t
ORIGIN      
        1 gtccagtata ctaatgtcta tggtatcttt acattttcac ctttcattgg gtcgctgcac
       61 tcatatccag ttgatatctc atggtatatt caatccattc cctttgatga ttcctgtcaa
      121 acctcctgat taaattagtt aacagcgatg gaatacataa cgttaagtac tttacgcctg
      181 caaatgtcag gttcacgctc taatgcttaa tttataatac gtattacctt accacaggaa
      241 atagatagca tgttatccaa aaaaattggc ttatcgatga tagtgttggg aataatgtcg
      301 tcttcagctt ttgctgatag catcgttgaa gggagaacac tcaatgtcgc agtatcaccg
      361 gcctctcccc ctatgttatt taaaagtgct gatggcaaat tgcaggggat agatctggag
      421 cttttttcgt cttactgtca gtcacggcat tgtaagctaa acatcaccga atatgcctgg
      481 gatggaatgc ttggcgcagt ggcgagtggt caggctgatg tagcattttc gggaatttca
      541 atcacagata aacgtaagaa agttattgat ttttctgaac cttattac
//
LOCUS       DAJVSD010000468          583 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.471, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000468 DAJVSD010000000
VERSION     DAJVSD010000468.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.471"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..510
                     /locus_tag="OQP62_004518"
     CDS             <1..510
                     /locus_tag="OQP62_004518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012016429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HCS1723868.1"
                     /translation="SREGGYVDHPDDRGGPTHWGITLTTARANGYMGDMRNLTRNQAL
                     KILEADYWYGPRLDQVAIISHSIAAELCDTGVNMGPSIPIKYFQRWLNVFNDQQKIYP
                     DLIADGQIGPRTLSALTFFLSHRRDEGEMILIRALNCSQGQRYLELAEKRQANESFVY
                     GWIKERVRL"
BASE COUNT          161 a          112 c          150 g          160 t
ORIGIN      
        1 agtagagaag gcggttacgt tgatcaccct gacgacaggg gggggccaac gcattggggt
       61 ataaccctga cgacggcccg ggctaatggc tatatggggg atatgcggaa tcttacccgt
      121 aatcaagcat taaaaatcct tgaggcagat tattggtatg gtccacgact tgatcaggtt
      181 gccattatct ctcactctat tgcagctgag ctttgtgata ctggtgtgaa catgggaccc
      241 tcaatcccga ttaagtactt ccagcgttgg cttaatgttt ttaatgatca gcaaaaaatt
      301 tatccggatt tgatagcaga tggtcagatt gggccacgga cgctttcggc actaacattt
      361 tttctctctc accggagaga tgagggcgaa atgatactta tccgggcatt gaattgtagt
      421 cagggacaac gctatctgga gttagctgaa aagcgccagg cgaatgaatc atttgtttat
      481 ggatggataa aggaacgggt aagattgtaa ttcccttact taccactata gcggtttgtg
      541 atgatagcat ataatgatat attcacacag agaactggtg aaa
//
LOCUS       DAJVSD010000469          572 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.472, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000469 DAJVSD010000000
VERSION     DAJVSD010000469.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 572)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.472"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            23..>572
                     /locus_tag="OQP62_004519"
     CDS             23..>572
                     /locus_tag="OQP62_004519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008785242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
                     /protein_id="HCS1723869.1"
                     /translation="MILPAHAGIVIYGTRVIYPAEKKEVVVQLVNQGEQASLVQSWID
                     DGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPNSLPDNKESLFYLNVLDIPP
                     NSQENAGKNVLKFAMQNRIKLIWRPSRIAAVTKDSFQRIGLFRSNKTVIMKNDTANWI
                     TVTDVKAGNTKINDQTIMLPPLS"
BASE COUNT          179 a          117 c          128 g          148 t
ORIGIN      
        1 atctgcagta ttattatctg ccataatttt gcctgcgcat gctggtattg ttatttatgg
       61 tacgcgtgtg atttacccgg cagagaagaa agaagtcgtt gtacaattgg tgaatcaggg
      121 cgagcaagct tcgctggtac agtcctggat tgatgacggt aacacttcat taccgccaga
      181 aaaaattcag gtgccattta tgctgacgcc gccagtggcg cgcgttgccg ctgagtctgg
      241 tcagcagatc aaaatcaaga aaatgcctaa tagcttaccg gacaacaaag aaagtctgtt
      301 ttatctgaat gtgcttgata ttccaccaaa cagccaggaa aacgccggta aaaatgtgct
      361 taaattcgca atgcagaatc gaataaaatt aatatggcgc cccagtcgaa ttgccgccgt
      421 aaccaaagac agttttcaga ggattggttt atttcgcagt aataaaactg tcatcatgaa
      481 aaatgatact gcaaactgga ttaccgtgac ggatgtaaaa gcaggaaata ctaagattaa
      541 tgatcaaact atcatgctgc caccgctatc ga
//
LOCUS       DAJVSD010000470          572 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.473, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000470 DAJVSD010000000
VERSION     DAJVSD010000470.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 572)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.473"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..509
                     /locus_tag="OQP62_004520"
     CDS             <1..509
                     /locus_tag="OQP62_004520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS1723870.1"
                     /translation="TGSLLVSSSAMAVSDNTITFQGEVSDETCSVVINGNQAKPVVLL
                     PTVSTKELSEQGKTAGPITFDIGLSGCTGSKDKTTKISTVFVGNQVTSNGNLGNTGSA
                     KNVEVQLLDTSGEPINLTGGFTGDGDLQLEPNASEASATYTARYYSTGKAEAGTVAAT
                     LQYAVSYK"
BASE COUNT          154 a          139 c          143 g          136 t
ORIGIN      
        1 tcacaggctc gcttcttgtc tccagcagcg cgatggctgt ttctgataac accatcacct
       61 ttcaagggga agtctctgat gaaacgtgct ctgtcgtgat taatggtaat caggctaaac
      121 ccgtcgtgtt attgccaaca gtaagtacta aagagttatc agaacaaggg aaaaccgcgg
      181 ggccaataac gtttgatatt gggctgtccg ggtgtaccgg ttctaaggac aaaacaacaa
      241 aaatttccac cgtctttgtc ggtaatcagg tcaccagtaa cggtaacctg ggtaatactg
      301 gcagcgcgaa aaatgttgaa gtccaattac tcgacacttc aggggagcca atcaatctga
      361 ccggcggctt tactggcgac ggcgacctac agctggaacc aaatgcttct gaagcgagcg
      421 cgacttatac cgcgcggtat tactctaccg ggaaagcaga ggctgggaca gtcgctgcca
      481 ccctacaata cgccgtttcg tataaataat tgtcgctacg gtctggcatt gaaacgccag
      541 accattttca atcgccaggg agttgttgag at
//
LOCUS       DAJVSD010000471          572 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.474, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000471 DAJVSD010000000
VERSION     DAJVSD010000471.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 572)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.474"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..>572
                     /locus_tag="OQP62_004521"
     CDS             <1..>572
                     /locus_tag="OQP62_004521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1723871.1"
                     /translation="RPTGKEKNLQAILNIHRHVIQNISPVTITAGKTLDIKIDNQSHI
                     LLITKGAIKVCRRIDSIVMGCGVSPMILGLVDAYADLYQLEENSDVFFIAETTCEYYP
                     VPVKDFVEIADEKHLWRDISNILMYRIAFMSNRDRNLIGQDAYSQIKALLLELWSYPE
                     SSRFEINAQNFIQQRTGLSRSRIMQVLSEL"
BASE COUNT          170 a          132 c          117 g          153 t
ORIGIN      
        1 tcgtcccaca gggaaagaaa aaaacctgca agccatttta aatattcatc ggcacgttat
       61 tcaaaacatc tcccctgtca ctattacggc cggtaaaacc ctggatatca agattgataa
      121 tcaatcccac atcctgttaa tcactaaagg cgctattaaa gtatgtcggc gtatcgacag
      181 tattgtaatg ggctgtggtg tctcgccaat gattttaggc cttgtagatg cctatgccga
      241 cttataccag ttagaagaga attcagacgt cttttttatc gccgaaacca cctgtgaata
      301 ttatcctgtc ccagtaaaag attttgtgga aatagccgat gaaaagcatc tctggcgtga
      361 catttcgaac atcctgatgt accgcattgc tttcatgagt aaccgtgaca gaaaccttat
      421 cgggcaggac gcctatagcc agataaaagc gctgttactt gaactgtggt cgtatcctga
      481 aagctcacga tttgagatca acgcacagaa cttcatacag cagagaaccg ggctttcacg
      541 cagccgtatc atgcaggtac tttcagaatt aa
//
LOCUS       DAJVSD010000472          568 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.475, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000472 DAJVSD010000000
VERSION     DAJVSD010000472.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 568)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.475"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..561
                     /locus_tag="OQP62_004522"
     CDS             <1..561
                     /locus_tag="OQP62_004522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000778346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723872.1"
                     /translation="MWREPKPVVKEGKYYSLIMDRGELQKAVKSSSNNYLFSEKGAGV
                     KPLVLIGSPVEISEFMLQNKTRSIENHIKGLPDIYMGVTKYKPKQRFTGLFPLQDILT
                     QTVDQVSKFVPGTDITDAVGIPSDLKALQQAILAMKQKDKISKNILYVKFSYLPEDGM
                     VKVGSKTVSFGRILEKMQQSNRTLRR"
BASE COUNT          193 a          107 c          128 g          140 t
ORIGIN      
        1 atgtggcgtg aacccaaacc tgttgtgaaa gagggtaaat attacagctt aatcatggat
       61 cgtggcgagt tgcaaaaagc agtaaaaagc agcagcaata actatctctt ttccgaaaaa
      121 ggtgcaggag tgaagccgct ggtattgatc ggctctccgg tagagattag cgaatttatg
      181 ttgcaaaata aaactcgcag cattgaaaac cacattaaag gtctacctga catttatatg
      241 ggagtgacaa aatataaacc caaacaacgt tttaccggct tatttccgct acaggatata
      301 ttgactcaaa ctgttgatca ggtatcgaaa tttgtgcccg gtaccgatat caccgatgcg
      361 gtgggaatcc cctccgacct aaaagcatta cagcaagcca ttttggctat gaagcaaaaa
      421 gataaaatca gcaaaaatat actgtacgtc aaatttagct acttgccgga agatggaatg
      481 gtgaaagtag gaagcaaaac agtttctttt ggtcgtattc tggagaaaat gcagcagagt
      541 aatcgtaccc tgcgtagata agcaggaa
//
LOCUS       DAJVSD010000473          564 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.476, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000473 DAJVSD010000000
VERSION     DAJVSD010000473.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 564)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.476"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            164..430
                     /locus_tag="OQP62_004523"
     CDS             164..430
                     /locus_tag="OQP62_004523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1723873.1"
                     /translation="MDNTYIGEQIRVSTRHTNNLKKWRDNDHISHILFNLSRDLPDGE
                     TQKLNNKRLFLKQTNHNLLLSLTPPAHRQRVLPSEHHHRKKIIT"
BASE COUNT          183 a          117 c           95 g          169 t
ORIGIN      
        1 tacagcgcta tgcgctgttt ttaatttcaa aacgataaca aaagttaatt aagtattatc
       61 ccatgccgag agtgtgtatt tttattaaaa aagggatttg tccggaattt tcctgacact
      121 taaataaaat tatgtttgta gcaatggagc ttgtgctacg cctatggaca atacgtatat
      181 tggtgagcag atacgcgtct ccacacgcca tactaataat ttaaaaaaat ggcgtgacaa
      241 tgatcacata agtcacattc tgttcaattt atctcgtgat ttacctgatg gcgagacaca
      301 aaaattaaat aataaacgcc tgtttttaaa acagacaaat cataatttac tgctctcgct
      361 gactccacct gcccatcgcc agagggtgct tccctctgaa catcaccatc gcaagaaaat
      421 aattacttaa agcaactctg taaaaagctt aatcgttaat cgtcgccact gacgcattga
      481 atattcgcca tttcctgatg ctcattcaca caaatcagaa gatggctgtg atccatttat
      541 caaaattgac tgggtttatc gcga
//
LOCUS       DAJVSD010000474          557 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.477, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000474 DAJVSD010000000
VERSION     DAJVSD010000474.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.477"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            218..>557
                     /locus_tag="OQP62_004524"
     CDS             218..>557
                     /locus_tag="OQP62_004524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1723874.1"
                     /translation="MRPIKNAKKIDYNLIKVFDTVITEGNATRAARKLDVTPAAISQA
                     LLRLQNLYGEELFIRTRKGLVPSSKGKSLHQVFRQAIESIESTLCDKTDAQESNELIV
                     LGSDITENYYF"
BASE COUNT          186 a           93 c          110 g          168 t
ORIGIN      
        1 tttttacttt tttataaaat gtgccagatg tttttgatgt tttttataaa atagcatcat
       61 gtgtttttat tttacacagg ctgaaatgat atcaataaaa ttataattta ataacaaaca
      121 gatagaggaa atgatttact tattgaaata agtgtggtgc aaggttaatc tgcgccttaa
      181 atgatggtgc cagattatac cagccaggat aacctatatg cggccaataa aaaatgctaa
      241 aaaaattgac tacaatctga tcaaagtgtt cgatacggtt attactgaag gaaatgcaac
      301 cagggctgcg aggaaactgg atgtcacgcc tgcggcgatc tctcaggctc ttcttcgttt
      361 acaaaatctt tatggcgaag agttatttat cagaacccgc aaaggattag tcccgtccag
      421 caaaggtaaa tcgcttcacc aggtatttcg ccaggcaatt gaatctatag aaagcacact
      481 gtgcgataaa acagatgcgc aggagagtaa tgaactcatt gttctgggaa gtgatatcac
      541 tgaaaattac tattttc
//
LOCUS       DAJVSD010000475          554 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.478, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000475 DAJVSD010000000
VERSION     DAJVSD010000475.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.478"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..>554)
                     /locus_tag="OQP62_004525"
     CDS             complement(<1..>554)
                     /locus_tag="OQP62_004525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide 1,3-galactosyltransferase"
                     /protein_id="HCS1723875.1"
                     /translation="YGIDKNFLFGCGVSIASVLIANREKALAFHVFTDFFGSEDQQRF
                     DALAKQYATQIVVYLIDCERLKSLPSTKNWTYATYFRFIIADYFSDKTDRVLYLDADI
                     ACKGSIQELIDLNFAENEIAAVVAEGELEWWTKRSVSLATPGLVSGYFNAGFILINIP
                     LWTAENISKKAIEMLKDPEVVQRIT"
BASE COUNT          179 a          128 c           98 g          149 t
ORIGIN      
        1 gttatgcgct gtactacctc cggatctttt agcatttcaa tcgctttctt agagatattt
       61 tctgcggtcc aaagaggtat gttaattaaa ataaaaccgg cattaaaata gccagaaacc
      121 aacccaggcg ttgccaggct aaccgagcgc ttagtccacc actccaactc gccttcagca
      181 acaaccgccg caatctcatt ttcagcgaaa ttaagatcaa taagttcctg aatacttccc
      241 ttacatgcaa tatctgcatc cagataaagc actctatctg ttttatctga aaaatagtcg
      301 gcaataatga atctaaagta tgttgcatag gtccagtttt tggtactggg tagcgatttt
      361 aatcgctcac agtcaatgag ataaacaaca atctgcgtag cgtactgttt tgctaatgca
      421 tcaaatcgct gctgatcttc agagccaaag aaatcggtaa aaacatggaa agctaacgcc
      481 ttctcacggt tagcaatgag aaccgatgca atagagacac cacagccaaa aagaaagttt
      541 ttatcaatcc cata
//
LOCUS       DAJVSD010000476          547 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.479, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000476 DAJVSD010000000
VERSION     DAJVSD010000476.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.479"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            56..389
                     /locus_tag="OQP62_004526"
                     /pseudo
     CDS             56..389
                     /locus_tag="OQP62_004526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_449164.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          158 a          126 c          119 g          144 t
ORIGIN      
        1 aaatatctga ataaccattt ctattttctc aagtagaact tccaactaaa gcgaattgtt
       61 tgaaaaggaa aacgttatgc ctggatgtat aagtgcctgt tcgtgcgttg ccagcccgac
      121 gcctcccgat cctaaggccc ccccctaagc ctaagtggat agagttaaaa ggttattgtg
      181 ttacatgtac tagtcaggag gatattcgtc cacctaaaga gggtgaacca aagcaaaaaa
      241 tgacacccag cgagttagtg ctgttacgag gtcttttaaa agacctgggg gtaacacaac
      301 atccctggca agacccgaca gtaaaatcca ctaactgtgg gttgccatat tttccagtag
      361 atcctggaga acgagaaacc gatgtttgat ggttttctgt ctgcaaagcg cctgataatt
      421 attaccaggc gctttgtatt ttggcgccaa catcactttc attgtcatat atcgaatgac
      481 tacaatcgta tccgatcccg ccattaccct gacggcaaac tgtaagaacg gtttgccgtc
      541 gacaggg
//
LOCUS       DAJVSD010000477          535 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.480, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000477 DAJVSD010000000
VERSION     DAJVSD010000477.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.480"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            65..535
                     /locus_tag="OQP62_004527"
                     /pseudo
     CDS             65..535
                     /locus_tag="OQP62_004527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000789648.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Saf-pilin pilus formation protein SafA"
BASE COUNT          151 a           93 c          145 g          146 t
ORIGIN      
        1 tgaattttgg tatgacatta ttcattcttg atgtgctggg ggattttgaa aaggtggatt
       61 tccgatgaaa aacataaaag atttaattat cgcaagcgca ttgagcatta tggctgctag
      121 ttgttatgct ggctcgctcg tgccgaatac aagcactggc gtgtcggcgg atgtaaactt
      181 cagcaatcct ggacaactac aagcacagct tactccagtg tctggcttgg tggcagggcc
      241 tcataagggt gatgaggcta ttgctatact ttcggcaagc ggttcgagca aacaatacgt
      301 ggtaacggga gattattcta aacctgaaaa cagtgggcaa cgacagcgat gtgtggacgg
      361 taattggtaa aagtggtaat accattaaaa ttacctttgg gggggtagcc tgtggctcaa
      421 aaggttcatt agtggatggt gcttcgcata agtggtggat atataacatg acagacaaag
      481 tcgctgtgaa attgtctgga tcacaaacgg taaaggctga tacttatcca gtgac
//
LOCUS       DAJVSD010000478          519 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.481, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000478 DAJVSD010000000
VERSION     DAJVSD010000478.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.481"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(35..>519)
                     /gene="yehD"
                     /locus_tag="OQP62_004528"
     CDS             complement(35..>519)
                     /gene="yehD"
                     /locus_tag="OQP62_004528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fimbrial protein YehD"
                     /protein_id="HCS1723876.1"
                     /translation="SAGAFAVDEYDSGVLNINGKVVGTTCQFLGTNTAEIRLNEIGAD
                     KIINLTPGQIYDAVTNQTQMPLKIKCQQGVAPRITFSSTQFDSHDITFNNGSAKGVGF
                     AVYYGSTDNQIDPETGVTLDPNSSGEYDLTFLARYARLDGDVASGDVSSTLTLTVVTD
                     "
BASE COUNT          153 a          129 c           99 g          138 t
ORIGIN      
        1 aaaaaccggc gacgaacgcc gccggttgaa taaattagtc agtaacaacc gttaaagtca
       61 gtgttgagct aacatcacca gaagcaacat caccgtctaa acgcgcatag cgtgctaaaa
      121 aagtcaggtc gtattcaccg ctgctatttg gatctagtgt cacccccgtc tctggatcaa
      181 tctgattatc cgtacttccg tagtaaaccg caaaaccgac acctttggca gacccgttat
      241 taaatgtgat atcgtggctg tcaaattgcg ttgaagagaa ggtaatacgc ggcgctacac
      301 cctgttgaca ttttattttc aacggcatct gagtttgatt agttactgcg tcataaatct
      361 gacccggggt taaattaatt attttatccg caccaatttc attcagtcta atttcagcgg
      421 tgttcgtacc caaaaattga caggtagtac caaccacctt tccgttaata ttcagaacgc
      481 ctgaatcata ctcatcaaca gcaaaagccc cagcgctca
//
LOCUS       DAJVSD010000479          517 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.482, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000479 DAJVSD010000000
VERSION     DAJVSD010000479.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 517)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.482"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..213
                     /locus_tag="OQP62_004529"
     CDS             <1..213
                     /locus_tag="OQP62_004529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000768133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin immunity protein"
                     /protein_id="HCS1723877.1"
                     /translation="LRVIFSENESDTDETLDPLLEYFEKITEYPGGTDLIYYPETESD
                     GTPEGILNIIKEWRESQGLPCFKKSK"
     gene            456..>517
                     /locus_tag="OQP62_004530"
     CDS             456..>517
                     /locus_tag="OQP62_004530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001729069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin immunity protein"
                     /protein_id="HCS1723878.1"
                     /translation="MELKNNLEDYTEDEFIEFLN"
BASE COUNT          188 a           70 c          117 g          142 t
ORIGIN      
        1 ttgagagtga tattttctga aaacgagtcg gatacagatg aaacattaga tccattactt
       61 gagtattttg agaagatcac tgaataccca ggtggaacag atcttatcta ttatcctgaa
      121 acggaaagtg atggaacacc tgagggtatt ctgaacataa ttaaagaatg gagagaatct
      181 caaggattgc cttgttttaa gaaaagtaaa tgaaaatcag gtgtaggaga atgcccagag
      241 ttactggcgc agtttagtaa atcgaatcaa actttgataa aaagaggtcg agcgccttac
      301 tccttgataa ggcaacaagt cggaggtagg tggacttatg aaattcccca cgttggaaag
      361 atccagtatg gaggaatggt gtttgatgtt gataacctta tgataaacac tcctaaaaat
      421 catatacgat tgcataagta aggtttgagg tgaaaatgga actaaaaaat aaccttgaag
      481 attatacaga agatgagttt atcgagtttt taaataa
//
LOCUS       DAJVSD010000480          513 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.483, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000480 DAJVSD010000000
VERSION     DAJVSD010000480.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.483"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            147..>513
                     /locus_tag="OQP62_004531"
     CDS             147..>513
                     /locus_tag="OQP62_004531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2628 domain-containing protein"
                     /protein_id="HCS1723879.1"
                     /translation="MDKDYINDGSLSEKWKYRFSFYDQHGFPGFWKVSPEYKQAFKAL
                     KPRQRLTIQINFIAFFFSWIYLFVLGLWKKAIIVILLGIVAIFIGALIGVNILGLVVA
                     AYVGVNTNKWFYEKEVKGIN"
BASE COUNT          143 a           86 c          101 g          183 t
ORIGIN      
        1 ccttcgtgat aatggttgct gaagatttcg cttgcgatgg ctttggtatg cctctttttc
       61 taatctggta ttttgcaacc ttttctctgc tacttctggc ccccccggat tcgaattcac
      121 tcaacaagta atttaatgga gtttacatgg acaaggatta tattaatgat ggttcgttat
      181 ctgaaaaatg gaaataccgt ttttcatttt acgatcaaca tggtttccct ggattttgga
      241 aagtaagccc agaatataaa caggcattta aagcattaaa gccccgacaa cggttgacta
      301 ttcaaataaa ctttattgcc tttttcttct catggattta tttgtttgta ctgggtctgt
      361 ggaaaaaagc aattatagtt attttattag ggatcgttgc aatatttatt ggagcattaa
      421 tcggcgttaa catacttgga cttgttgtcg cagcttatgt cggcgtcaat acaaataagt
      481 ggttctatga aaaagaggtt aaaggtatca ata
//
LOCUS       DAJVSD010000481          513 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.484, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000481 DAJVSD010000000
VERSION     DAJVSD010000481.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.484"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..510)
                     /locus_tag="OQP62_004532"
     CDS             complement(<1..510)
                     /locus_tag="OQP62_004532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001143951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HCS1723880.1"
                     /translation="MPVGVPVPWPSATPPAGWLKCNGAAFSSEMYPNLAKAYPTNKLP
                     DLRGEFIRGWDDGRGVDAGRALLRLQDDSFEAHRHESFFYAGISRNEIPLKNLPSSDE
                     MLTLSSTTNALSPDGIDATNSLIGNDDYNCLIEGNKNNKRTATGLSTSIVGATETRPR
                     NIAFNYIVRA"
BASE COUNT          127 a          127 c          124 g          135 t
ORIGIN      
        1 cgcccttacg atgtaattaa acgcaatgtt acgggggcgg gtttcagttg cgccgacaat
       61 actggtactt agacccgttg ctgttcgttt gttattttta ttcccttcga tcagacagtt
      121 gtaatcgtca ttaccaatta acgaattggt ggcatcaata ccgtccggtg acaaggcatt
      181 agttgtggaa cttaaagtca gcatctcgtc tgaacttgga agatttttta atgggatttc
      241 attgcgtgaa atacccgcat aaaaaaagga ctcatgcctg tgcgcttcaa aagagtcatc
      301 ctgaagcctt agcaaggctc gccccgcatc cacgccacgt ccgtcatccc agccacggat
      361 aaattcaccc cgtagatccg gtagtttatt tgtaggataa gcctttgcca gattggggta
      421 catttcagaa gaaaatgctg cgccgttaca tttcagccac cctgctggcg gtgtggctga
      481 gggccacgga acgggcacac caacgggcag cgc
//
LOCUS       DAJVSD010000482          513 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.485, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000482 DAJVSD010000000
VERSION     DAJVSD010000482.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.485"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            160..363
                     /locus_tag="OQP62_004533"
     CDS             160..363
                     /locus_tag="OQP62_004533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1723881.1"
                     /translation="MPDTDENRRADIHAAGSLKTVKSFKGFIRRKSCAGRQNRKLNAR
                     ALIPDDLVIVESDPEKIDTLAVK"
BASE COUNT          139 a          113 c          135 g          126 t
ORIGIN      
        1 gcggcgtatc ttaaatcaga ggatggtcag gactggtatg ggtgccagca attattttca
       61 gcagacacgc tgaaaattac ctacgacgat aacgatgtta ttacgtgtat tacgcgtgat
      121 gtttccgggc tgtggcctgc tggccagagc gttgcagagt tgcctgatac ggatgaaaac
      181 cgtcgcgctg atattcatgc tgctggcagt ttaaagacgg taaagtcgtt caaagggttt
      241 attcgccgga agagctgcgc aggcaggcag aatcgaaaat tgaacgcccg ggcgttgata
      301 ccggatgatc tggtcatcgt ggaaagcgac cctgaaaaaa tcgacacttt agctgtaaaa
      361 tgacagtccc gccatccggt catcataacg gatttttctt ctgcaccttc tgaagcccgc
      421 catgtcagga cgaccatgaa tccgccgata accttattgt gaaattaaga ccaggaagag
      481 atgatgtctg ccggacagat actatatgta aat
//
LOCUS       DAJVSD010000483          511 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.486, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000483 DAJVSD010000000
VERSION     DAJVSD010000483.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.486"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..>511)
                     /locus_tag="OQP62_004534"
     CDS             complement(<1..>511)
                     /locus_tag="OQP62_004534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016505863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
                     /protein_id="HCS1723882.1"
                     /translation="VLDVSIYEKNGQVQNYTVPYSTPVLSLPDGYSKYSVTIGRYREV
                     NNDYIDPVFFEGTYIYGLPYGFTLFGGVQWANIYNSYAIGASKDIGEYGALSFDWKTS
                     VSKTDTSNENGHAYGIRYNKNIAQTNTEVSLASHYYYSKNYRTFSEAIHSSEHDEFYD
                     KNKKSTTSML"
BASE COUNT          172 a           98 c           73 g          168 t
ORIGIN      
        1 ataacataga agttgttgat ttcttatttt tatcgtaaaa ttcatcatgc tcgctactat
       61 gaattgcttc agaaaaagtt ctataatttt tcgaataata gtaatgacta gccaaagata
      121 cttcggtgtt tgtctgagcg atatttttat tgtatctaat cccatatgca tgaccatttt
      181 cattggatgt atcagtcttc gaaacagatg ttttccagtc aaaagacaga gcaccatact
      241 caccaatatc tttacttgcg cctatggcgt atgaattata aatatttgcc cattgcactc
      301 caccaaataa agtaaaccca taaggcagac catatatata agtcccttca aaaaaaacag
      361 gatcgatata atcattgtta acctccctgt atctaccaat agttacacta tatttagaat
      421 atccatcagg caaagataat acaggagttg aatatggcac tgtatagttt tggacctgcc
      481 catttttttc ataaatgcta acatcaagaa c
//
LOCUS       DAJVSD010000484          511 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.denovo.487, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000484 DAJVSD010000000
VERSION     DAJVSD010000484.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.denovo.487"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            <1..>511
                     /locus_tag="OQP62_004535"
     CDS             <1..>511
                     /locus_tag="OQP62_004535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1723883.1"
                     /translation="LKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRT
                     QFNDPLFIRSGKGITPTVTGINLHYHLENNLNSLEQTINIMNQSSLKKKFIIYSPQLL
                     ITQYAMKLVKYIRKDPQVEIEHHDILTTDELPEDLLAYRKADVVVSMAPLNNRSIVCT
                     HFNRLECILV"
BASE COUNT          165 a          110 c           81 g          155 t
ORIGIN      
        1 ccttaaaaaa tttgatctta acctgttggt tatatttgaa tgtatttatc aacatttaag
       61 cattagcaaa gcagcggaaa cactctatat tacaccttct gccgtcagtc agtcattgca
      121 acgcctgcgc acgcaattca atgatcctct atttattcgc tcaggcaaag gaattacgcc
      181 taccgtaaca ggcattaatt tacattatca tttagaaaat aaccttaaca gcctggaaca
      241 aactattaat ataatgaatc agtccagtct gaagaaaaaa tttattatct acagcccaca
      301 gctgttgatc acccaatatg cgatgaaatt agttaaatat atccgcaaag atccacaggt
      361 tgaaattgaa catcacgaca ttttgaccac tgacgaactg cctgaagatc tgcttgccta
      421 ccgcaaagca gatgttgtgg tttcaatggc cccacttaat aatcgttcta ttgtttgtac
      481 tcactttaat aggctagaat gtatcctggt t
//
LOCUS       DAJVSD010000485         3025 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.guided.341, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000485 DAJVSD010000000
VERSION     DAJVSD010000485.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3025)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3025)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3025
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.guided.341"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(43..1500)
                     /gene="pepD"
                     /locus_tag="OQP62_004536"
     CDS             complement(43..1500)
                     /gene="pepD"
                     /locus_tag="OQP62_004536"
                     /EC_number="3.4.13.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosol nonspecific dipeptidase"
                     /protein_id="HCS1723884.1"
                     /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIVSWAKEKG
                     LYVDRDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNSDTVHDFTTDPIRPYIDG
                     EWVKARGTTLGADNGIGMASALAVLADDNVVHGPLEVLLTMTEEAGMDGAFGLQSGWL
                     QADILINTDSEEEGEIYMGCAGGIDFTSNLPLTREAVPAGFACFKLTLKGLKGGHSGG
                     EIHLGLGNANKLLARFLAGHAEELDLRLIDFNGGTLRNAIPREAFATLAVATDNVGAL
                     KTLVNAYQDILKNELAEKEKNLTLQLNEVASDKAALTAPSRDTFVRLLNATPNGVIRN
                     SDVAKGVVETSLNVGVVTMSDANVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA
                     KGSYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPDMDMVSIG
                     PTITGPHSPDEQVHIESVGHYWTLLTELLKAIPAK"
     gene            1749..2207
                     /gene="gpt"
                     /locus_tag="OQP62_004537"
     CDS             1749..2207
                     /gene="gpt"
                     /locus_tag="OQP62_004537"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HCS1723885.1"
                     /translation="MSEKYVVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA
                     LLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIRE
                     MYPKAHFVTIFAKPAGRPLVDDYVIDIPQNTWIEQPWDMGVVFVPPISGR"
     gene            2296..>3025
                     /locus_tag="OQP62_004538"
     CDS             2296..>3025
                     /locus_tag="OQP62_004538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS1723886.1"
                     /translation="MTQANLSETLFKPRFKHTETSTLVRRFNRGSQPPMQSALDGKNV
                     PHWYRMINRLMWIWRGVDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA
                     KQAMDWQQKACQEQDAMRSGRYWLHASTLYNIAAYPHLKGDELAEQAQALANRAYEEA
                     AQRLPGSLREMEFAVPGGSPVTAFLHMPKGDGPFPTVLMCGGLDAMQIDYYTLYERYF
                     APRGIAMLTLDMPSVGFSSKWKLTQ"
BASE COUNT          691 a          800 c          812 g          722 t
ORIGIN      
        1 tgatagcccg tccagaaatg agacgggcat tttagcgctt tcttacttcg caggaatcgc
       61 tttcagcaat tcggtcagca gagtccagta gtggcccacg ctttcgatat gtacctgctc
      121 atccggagag tgaggtccgg taatggtagg cccaatagaa accatgtcca tatccggata
      181 gggtttctta aacagaccgc attccaggcc ggcgtggata atctggatgt tcggtgtctt
      241 gttgaacaga cgctgatagg tttcccgcac caggtgcatg accggcgagt tcgcatcggg
      301 ctgccagccc ggatagctgc cttttgcttc ggttttcgcg ccagccagct tgcccagcga
      361 atccagcata ctcaccacat aatctttacc gctgtcgata agagagcgaa tcaggcagtg
      421 aatttcgaca ttcgcatcag acattgtgac cacgccaacg ttcagcgatg tttccactac
      481 gcctttcgcc acgtctgaat tgcggatcac gccgttcggc gttgcgttca gcaggcgcac
      541 aaaggtatcg cgtgacggcg cggtcaatgc ggctttatca ctggcaacct cattgagttg
      601 cagcgtcagg tttttctctt tttccgccag ttcgtttttc agaatatcct ggtaagcgtt
      661 cactaatgtt ttcagagcgc ctacgttgtc tgtggcaacg gcgagggtag cgaacgcttc
      721 gcgcggaatc gcgttacgca gcgtgccgcc gttgaaatcg atcagacgca gatccagttc
      781 ttctgcgtgc ccggccagaa aacgcgccag caatttgttg gcattgccaa ggccgaggtg
      841 aatttcacca ccggagtggc cgcctttcag acctttcagg gttagcttaa agcatgcaaa
      901 tcctgcgggt acagcttcac gggtcaacgg cagattagag gtaaaatcga tgccgcctgc
      961 gcagcccata tagatctcac cttcttcttc agagtcggtg ttgatcagga tgtcagcctg
     1021 caaccagccg gactggaggc cgaacgcgcc atccatgccc gcttcttcgg tcatggtcag
     1081 cagcacttcc agcgggccat ggacgacatt atcgtcagcc agtaccgcta acgcagaagc
     1141 cattccaata ccattgtcgg cgccgagcgt agtaccgcgc gctttaaccc attcgccatc
     1201 aatataaggc cggatgggat ctgtagtgaa gtcgtgaacg gtgtcgctat ttttttgcgg
     1261 caccatatcc agatgcgcct gtaaaacgac cggcttgcga ttttccatac ctgcagtggc
     1321 gggcttacgg atcagaatat taccgacctg gtcgcgatcc acgtaaaggc ctttctcttt
     1381 ggcccaactc acaatatgtt ccgcgagttg ctcttcgtga taggacgggt gaggaataga
     1441 acagattttg gcaaaaatat cccacaaagg ttgtggtgat aactgagaca gttcagacac
     1501 gataagtctc cttggcggtg gtctgaaaaa cgttcttaca ggccacaggg ttagcggaat
     1561 taataactct tacgagatgc gactgagaat accactttct ccgcctgcgg gtagtataaa
     1621 gcatacaaaa agaggcgtgg attccgctaa acactggttt ttagcgcgtc aggtctctat
     1681 aatctcgcgc aactatttcc ccctcgaaca ctttttaagc cgtagataaa caggctggga
     1741 cacttcacat gagcgaaaaa tacgtcgtca cctgggacat gttgcagatt cacgcacgca
     1801 aactggcgag ccgcctcatg ccttcagaac aatggaaagg cattattgcc gtaagtcgtg
     1861 gcggccttgt accgggcgca ctactggcgc gtgaattggg cattcgtcat gtcgataccg
     1921 tatgcatctc cagctacgat cacgataacc agcgcgaact gaaagtgctg aaacgtgcag
     1981 aaggcgatgg cgaaggcttt atcgtcatcg acgatctggt cgataccggc ggcaccgccg
     2041 tcgcgattcg cgaaatgtac cctaaagcgc atttcgtcac gattttcgct aaaccggcgg
     2101 gccgtccgct ggttgatgat tatgttattg atattcctca gaacacctgg attgagcagc
     2161 cctgggatat gggtgtggta tttgtaccgc cgatttcagg tcgttaatca gcagcttttc
     2221 agagcgcccg gcaatgccgg gcgctgtttt attggttaca ataagcctct atgagtatcc
     2281 aaggaggctg cacgaatgac acaggctaac ctcagcgaaa ccctgttcaa accccgcttt
     2341 aaacatactg aaacgtctac ccttgtccgt cggttcaatc gtgggtcgca gccgcccatg
     2401 caatccgcgc tggacggtaa gaacgtcccg cattggtatc gcatgataaa ccgcctgatg
     2461 tggatttggc gcggcgttga cccacgagaa atccttgatg tgcaggcgcg cattgtgatg
     2521 agcgacgcag agcgaacgga tgatgattta tacgatacgg tcatcggtta ccgcggcggc
     2581 aactggattt atgagtgggc aaagcaggcg atggactggc agcagaaagc ctgtcaggaa
     2641 caggacgcca tgcgcagcgg acgctactgg cttcatgcct caacgctcta taacattgcc
     2701 gcctacccgc atttgaaggg cgatgagctg gcggagcagg cgcaggcgct ggcgaatcgc
     2761 gcctatgaag aggccgcgca gcggttgcca ggctcgttac gtgaaatgga atttgccgtt
     2821 cctggcggtt cgcctgtcac cgcgttttta catatgccga aaggggatgg tccgtttccg
     2881 acggtgctca tgtgcggcgg cctggacgcc atgcaaatcg actattacac cctgtatgaa
     2941 cgctatttcg cgccgcgcgg tatcgcgatg ttaacgcttg atatgccttc ggttggattt
     3001 tcatcaaagt ggaaattaac ccagg
//
LOCUS       DAJVSD010000486         2435 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.guided.355, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000486 DAJVSD010000000
VERSION     DAJVSD010000486.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2435
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.guided.355"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            complement(<1..116)
                     /locus_tag="OQP62_004539"
     CDS             complement(<1..116)
                     /locus_tag="OQP62_004539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1723887.1"
                     /translation="MNLLQMDMNLLKVLYVLLETSSTGKTAQKLALSPSAVS"
     gene            190..1074
                     /locus_tag="OQP62_004540"
     CDS             190..1074
                     /locus_tag="OQP62_004540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001083230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HARLDQ motif MBL-fold protein"
                     /protein_id="HCS1723888.1"
                     /translation="MNRYVLFFVCIFSTSALPAMAALDPSQPLSPAPPLSLFKAWAKP
                     MKPFQITEGVWYVGTENLSSILLTTPAGHILIDAGLDESAPQIKANIEAAGFRFTDVR
                     YLLSSHARLDQAGGMARLKAWSGAQLVASQPNADQMARGGRQDFALGDALPFPLVTTD
                     KIIHNQESISLGGVTVTALFTPGHLPGSTSWRVTLRNGKTLIYADSLATPDYLLINNK
                     NYPDLVTDIQSSFKTLAAQHVDIFIANKGDRFGLLEKRQQLRNGDTQAFFDSNGLQQY
                     VERSRQRFITQLTAQQPQ"
     gene            1322..1939
                     /locus_tag="OQP62_004541"
     CDS             1322..1939
                     /locus_tag="OQP62_004541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HCS1723889.1"
                     /translation="MLLHVLYLIGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGG
                     SVRDILLGHYPLGWVKHPEYVIIVATAAVLTTIVAPVMPYLRKLFLVLDALGLVVFSI
                     IGAQIALDMGEGPIIAVVAAATTGVFGGVLRDMFCKRIPLVFQKELYAGISFASAVLY
                     IALQHYVMNPDVVVISTLLFGFTARLLALRLKLGLPVFYYRHEGH"
     gene            complement(1936..>2435)
                     /gene="ligB"
                     /locus_tag="OQP62_004542"
                     /gene_synonym="yicF"
     CDS             complement(1936..>2435)
                     /gene="ligB"
                     /locus_tag="OQP62_004542"
                     /gene_synonym="yicF"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462639.1"
                     /note="this ligase is similar to LigA but it lacks the
                     C-terminal BRCT domain; catalyzes strand joining of nicked
                     DNA in the presence of a divalent cation and NAD+; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HCS1723890.1"
                     /translation="HFNSLTCFYASATCQEQFISRLVWLGSRSALGLDGMGEASWRAL
                     HQTHRFEHIFSWLALTSAQIANTPGVAKGKSEQIWRQFNLARRQSFTRWIMAMDIPLT
                     QAALQASGDRSWEQLLMRTEQHWRQLPATGERRAGRVIDWRNNPQINALSRWLATQHI
                     PGFGS"
BASE COUNT          583 a          653 c          577 g          622 t
ORIGIN      
        1 tgactcaccg cagaaggcga caaagccagc ttttgcgccg ttttccccgt agagctcgtc
       61 tccagcagca catacagtac ttttaacagg ttcatatcca tttgcagcaa gttcattaaa
      121 cgtctctctt attgaacctg actaaattac tgccaggtat actgcgggcg cttcaatcag
      181 gagaacatta tgaatcgcta tgtattattc tttgtatgta tattttcaac atcagcactt
      241 cctgccatgg cggcattaga tccttcacaa ccgttatcac ccgcgcctcc gttatcactg
      301 tttaaagcgt gggctaagcc tatgaagccg tttcaaatca cagaaggcgt gtggtatgtc
      361 ggtacggaaa atctctcttc tattctgctg accactccgg cagggcatat tcttattgat
      421 gcggggctgg atgaaagcgc accgcaaatt aaagcgaata ttgaagcggc aggatttcgc
      481 ttcactgacg tgcgctatct gttgagcagc catgcgcggc tggatcaagc ggggggcatg
      541 gcacgtttga aagcgtggag cggcgcacaa ttggtcgcca gtcaacccaa cgccgatcag
      601 atggcgaggg gtggacgaca ggattttgcg cttggcgatg cgctcccctt cccgctcgtc
      661 accactgata aaattatcca caaccaggaa agcatcagcc tcggaggggt aaccgtgaca
      721 gcactattca cgcctggaca tctgcccggc tcaacctcct ggcgcgtaac gctccgcaac
      781 ggcaagacgc taatttacgc agatagtctc gccacacctg actatctgct gattaacaac
      841 aaaaattacc ctgacctggt tactgatatt cagagcagct ttaaaacact ggccgcccag
      901 catgttgata tctttattgc caacaaaggt gaccgcttcg ggctactgga gaaacgacag
      961 caacttcgca acggcgatac acaggcattc tttgattcca atggcttgca acagtatgtg
     1021 gaacgctcgc gtcagcgctt catcacacaa cttaccgcac agcagccaca atgaaatgac
     1081 tcaccggcgg cgcgtccagg gcgccgttca ggtaatttat ctaagtcaaa acagaaaaac
     1141 ctcgtataca ataaaccaca aaaatgatgt tcaatttatt gatatttata ataaataatt
     1201 attaatcata aatttagaat cattactaaa atttattaat cgtgtaatgc cttagaaaat
     1261 ctcaatcgtg atacagcgca caaatcgtta atcttcgccc ccagtaaatt agggggaaat
     1321 catgctgttg cacgttcttt atttaattgg catcactgcc gaggccatga cgggcgcact
     1381 cgctgcgggt cgtcgtcgca tggatacatt cggcgtaatt attattgcta ccgccaccgc
     1441 cattggtgga ggctcggttc gcgacattct gctcggtcac tatccgctgg gttgggtgaa
     1501 gcatcccgaa tatgtcatta ttgtggcgac tgccgccgta ttgaccacca ttgttgctcc
     1561 cgtcatgccc tatttacgca agcttttcct ggtacttgac gcgctggggt tggtggtttt
     1621 ctctattatt ggcgctcaga tagcccttga tatgggcgaa gggccaatta tcgccgtggt
     1681 agccgccgcc actaccggcg tctttggcgg cgtgctccgc gatatgttct gcaaacgcat
     1741 tccactggtg tttcaaaaag agctgtatgc cggcatttcg ttcgcctcgg cggtgctcta
     1801 tattgcgcta caacattacg tcatgaatcc ggatgtcgtc gttatctcta cgctactgtt
     1861 tggctttaca gcaaggttat tagcgctacg tcttaaactt ggcctgccgg tattttatta
     1921 ccgtcatgaa ggacactaag acccaaatcc gggaatatgc tgagtagcca gccatctgct
     1981 cagcgcgttg atctgcggat tattccgcca gtcgataact ctcccggcac ggcgctcgcc
     2041 cgtcgctggc aattgccgcc agtgttgctc tgttcgcatt aataactgct cccatgagcg
     2101 atcaccgctg gcctgtaatg cggcctgcgt taaggggata tccatcgcca tgatccagcg
     2161 ggtaaatgac tgccggcgcg ccaggttaaa ttgccgccat atctgctcgc tttttccttt
     2221 agcaacgcct ggcgtgttgg ctatttgcgc tgacgtcagg gcaagccagg agaagatatg
     2281 ctcaaagcga tgcgtctgat gcaaagcccg ccagctagct tcacccattc cgtccagacc
     2341 caacgccgac cgtgacccca gccataccag cctggagata aactgttcct gacacgttgc
     2401 cgacgcgtaa aagcaggtca gcgagttgaa atggc
//
LOCUS       DAJVSD010000487         2333 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate
            COL_INS_GMR_S_331_18 SAMEA7993288-rid15863523.guided.360, whole
            genome shotgun sequence.
ACCESSION   DAJVSD010000487 DAJVSD010000000
VERSION     DAJVSD010000487.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA7993288
            Sequence Read Archive: ERR5243674
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Salmonella enterica subsp. enterica serovar Typhi (Salmonella
            typhi)
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhi
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001481034.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001481034.1
            Genome Coverage       :: 29x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 04:16:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,470
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 132 of 245
            Pseudo Genes (incomplete)         :: 71 of 245
            Pseudo Genes (internal stop)      :: 85 of 245
            Pseudo Genes (multiple problems)  :: 38 of 245
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2333
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhi"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA7993288-rid15863523.guided.360"
                     /serovar="Typhi"
                     /isolate="COL_INS_GMR_S_331_18"
                     /isolation_source="gluteo absess"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:90370"
                     /country="Colombia"
                     /collection_date="2018"
     gene            14..208
                     /locus_tag="OQP62_004543"
     CDS             14..208
                     /locus_tag="OQP62_004543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001839549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1723891.1"
                     /translation="MQRSREVILMADHSKFDTVEPHAVATLSCITTILSDSALPSAIA
                     RRYQQAGCRLIMSDPSSGAR"
     gene            208..642
                     /gene="aac(6')"
                     /locus_tag="OQP62_004544"
                     /pseudo
     CDS             208..642
                     /gene="aac(6')"
                     /locus_tag="OQP62_004544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460578.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cryptic aminoglycoside N-acetyltransferase
                     AAC(6')-Iy/Iaa"
     gene            complement(700..1902)
                     /locus_tag="OQP62_004545"
     CDS             complement(700..1902)
                     /locus_tag="OQP62_004545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycolate oxidase"
                     /protein_id="HCS1723892.1"
                     /translation="MKTHHLIRVVASLAMLATSGLAYAEEYKASTDEKAIKMTNVASL
                     EARVQARMEKGAFGYIRGGAEDENNLRSNTESFDKKYIMPRVLQGIELKEIDLSTQLL
                     GIPLKTPIIQAPMAAQGLAHASGELATAKGMAQVGSIFSLSTYGNKTIEEVANVSGKN
                     PFFFQLYMSKNNQFNEFILAQAVKHGAKAIILTVDSPVGGYREEDIKNNFQFPLSFAN
                     LEMFARKNDDGSKTGKGAGISEIYAQAKQAFTPEDIAYVHRISGLPVIVKGIQSPEDA
                     EIAIQAGAAGIWVSNHGGRQLDSGPSSFDMLPAIAKVVNKRVPVIFDSGVRRGSHVFK
                     ALASGADIVAVGRPVLYGLNLGGAQGVASVIEQLNKELTINMMLGGARNIEQVKTTRL
                     LTEKDLPQ"
     gene            complement(1914..>2333)
                     /locus_tag="OQP62_004546"
     CDS             complement(1914..>2333)
                     /locus_tag="OQP62_004546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HCS1723893.1"
                     /translation="AISGELKYQPEKQVAEMRVTIPVSALNTGVDAFDNHIRSSDILD
                     AEKYPEIVFKSTKWHFEDNKPVSIDGLLTMKGVTKPVTLTTTKFGCYMSPIFKAQVCG
                     GDFVTQIDRTQWGVDYLVDMGMTKVVDIKIQAEAVKQ"
BASE COUNT          569 a          611 c          515 g          638 t
ORIGIN      
        1 caaaacgcgc attattcagc gctcacgcga ggtcatattg atggccgatc attcaaagtt
       61 tgatactgta gaaccccatg cggtggcgac gctgtcctgt attactacca ttcttagcga
      121 cagtgcgctc ccgtctgcta tcgcccgacg ttatcagcag gcgggatgcc gtctcatcat
      181 gtcagacccc tcatcaggag cgcgttaatg gacatcaggc aaatgaacaa aacccatctg
      241 gagcactggc gcggattgcg aaaacagctc tggcctggtc acccggatga cgcccatctg
      301 gcggacggcg aagaaattct gcaagccgaa catctggcat catttattgc gatggcagac
      361 ggggtggcga ttggctttgc ggatgcctca atccgccacg attatgtcaa tggctgtgac
      421 agttcgcccg tggttttcct tgaaggtatt tttgttctcc cctcgttccg tcaacgcggc
      481 ttagcgaaac aattgatagc agcagtgcaa cgatggggaa cgaataaagg gtgtcgggaa
      541 atggcttccg atacctcgcc ggaaaataca atttcacaga aagttcacct ggcgttagga
      601 tttgaggaaa cagagcgcgt cattttctac cgaaagcgtt gtcgaggaaa atcacacagg
      661 aaaaggtcgg gtataatacc cgacctctat attactgtat tactgtggca gatctttttc
      721 agttaacaag cgtgtcgttt tcacttgttc aatattcctg gcgccaccca acatcatgtt
      781 aattgtcagc tctttgttta gctgttcaat cactgatgcc acaccctgag cgccgccaag
      841 attaagaccg tataatacag gtcggccaac cgccacaata tccgccccgc tggctaacgc
      901 cttgaatacg tgcgaaccac ggcgtactcc actgtcaaaa ataacaggca ctcgcttgtt
      961 gacgactttt gcaatcgcag gaagcatatc gaatgaggac ggcccgctgt ctaattgacg
     1021 gccaccatga ttagaaaccc atattcctgc ggccccagcc tggatagcaa tttcagcatc
     1081 ctccggcgac tgaatgcctt ttacaataac cggcagaccg gaaatacgat gtacataggc
     1141 aatatcctcc ggcgtaaagg cttgtttagc ctgcgcgtaa atttcactta tccctgcccc
     1201 tttgccggtt tttgaaccat cgtcattttt cctggcgaac atttccaggt ttgcaaaact
     1261 cagcgggaac tggaagttat ttttaatatc ttcttcccga taaccgccga caggtgaatc
     1321 tacggtcaga ataatcgctt tagcgccatg ttttaccgct tgtgcaagaa taaattcgtt
     1381 aaattgatta ttcttactca tataaagctg gaagaagaac gggtttttcc cggaaacgtt
     1441 agccacctct tcgatggtct tgttgccata agtgctcaac gagaaaatcg aaccgacctg
     1501 cgccatgcct ttcgccgtcg ccaactctcc ggaggcgtgg gccaggccct gcgccgccat
     1561 cggtgcctgg attataggcg ttttaagcgg aatacccagt agctgcgttg ataaatcgat
     1621 ctcttttaac tcaatgccct gtaatacgcg cggcataata tattttttgt caaagctttc
     1681 ggtgttgctg cgaaggttat tctcatcttc ggctccaccg cgaatataac caaatgcccc
     1741 tttctccatt ctggcctgaa cgcgcgcttc cagagaggct acgttcgtca tttttattgc
     1801 tttttcgtcc gtgctggctt tgtactcttc agcataagcc aggcctgatg ttgccaacat
     1861 tgccagcgag gccactaccc gaatgaggtg atgagttttc atcattattc cttttattgc
     1921 ttaaccgctt ctgcctggat ttttatatcg acaactttcg tcatccccat atcgaccaga
     1981 taatctacac cccactgggt gcgatctatt tgcgtgacaa aatcaccacc gcaaacctgc
     2041 gccttgaata tcgggctcat ataacagcca aacttggtgg tggttaaggt gacgggctta
     2101 gttactccct tcattgttaa caaaccgtca atagaaactg gtttattatc ttcaaaatgc
     2161 cattttgtcg atttaaatac tatttctgga tatttttccg catccaaaat atcgctactg
     2221 cgaatatggt tatcaaacgc atccaccccg gtatttaagg cgctcacggg aatcgtcaca
     2281 cgcatctctg cgacttgctt ttccggctga tatttcagtt cgccgctaat agc
//
